HHsearch alignment for GI: 254780836 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=96.64 E-value=0.0031 Score=40.54 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
T Consensus 268 p~sFfQvN~~~ae~L~~~a~----~~l--~~~~~~~VlDLYcGvGtfsl~LA~-------~~-----~~V~gvE~~~~av 329 (440)
T PRK13168 268 PTDFIQVNAQVNQKMVARAL----EWL--DPQPGDRVLDLFCGLGNFTLPLAR-------QA-----AEVVGVEGVPAMV 329 (440)
T ss_pred CCCEEEECHHHHHHHHHHHH----HHH--CCCCCCEEEEEECCCCCCCHHHHH-------CC-----CEEEEEECCHHHH
T ss_conf 99878659999999999999----985--267898899862385621111353-------06-----7688760579999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754---579998664189998168567653100011123442266665357777
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674)
T Consensus 330 ~~A~~Na~~n~i~n~-------~f~~~d~~~~l~~~~~~~~~~D~vi~DPPR----------------------~G--~- 377 (440)
T PRK13168 330 ERARENARRNGLDNV-------TFYHANLFEDFTDQPWAKGGFDKVLLDPPR----------------------AG--A- 377 (440)
T ss_pred HHHHHHHHHCCCCCC-------EEEECCHHHHHHHHHHHCCCCCEEEECCCC----------------------CC--H-
T ss_conf 999999997499987-------899746456635578637999989999885----------------------27--8-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEE
Q ss_conf 4770659999999996146657880799973-89713477644326899999988494-688831767765578861699
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYL 407 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~I 407 (674)
T Consensus 378 ------~~~i~~-l~~~~p-----~~IvYVSCnPaTlA--------RDl~-~L~~~GY~l~~i--~~vDmFP~T~HvE~v 434 (440)
T PRK13168 378 ------FEVMQA-LAKLKP-----KRIVYVSCNPATLA--------RDAG-VLVEAGYRLKRA--GVLDMFPHTGHVESM 434 (440)
T ss_pred ------HHHHHH-HHHCCC-----CEEEEECCCHHHHH--------HHHH-HHHHCCCEEEEE--EEEECCCCCCEEEEE
T ss_conf ------999999-984798-----97999938989999--------9999-998789489599--996069999838999
Q ss_pred EEEEC
Q ss_conf 99946
Q gi|254780836|r 408 WILSN 412 (674)
Q Consensus 408 wil~k 412 (674)
T Consensus 435 all~R 439 (440)
T PRK13168 435 ALFER 439 (440)
T ss_pred EEEEE
T ss_conf 99983