HHsearch alignment for GI: 254780836 and conserved domain: PRK13168

>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=96.64  E-value=0.0031  Score=40.54  Aligned_cols=166  Identities=18%  Similarity=0.203  Sum_probs=95.5

Q ss_pred             CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
T Consensus       268 p~sFfQvN~~~ae~L~~~a~----~~l--~~~~~~~VlDLYcGvGtfsl~LA~-------~~-----~~V~gvE~~~~av  329 (440)
T PRK13168        268 PTDFIQVNAQVNQKMVARAL----EWL--DPQPGDRVLDLFCGLGNFTLPLAR-------QA-----AEVVGVEGVPAMV  329 (440)
T ss_pred             CCCEEEECHHHHHHHHHHHH----HHH--CCCCCCEEEEEECCCCCCCHHHHH-------CC-----CEEEEEECCHHHH
T ss_conf             99878659999999999999----985--267898899862385621111353-------06-----7688760579999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999989808875334566668234754---579998664189998168567653100011123442266665357777
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP  329 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP  329 (674)
T Consensus       330 ~~A~~Na~~n~i~n~-------~f~~~d~~~~l~~~~~~~~~~D~vi~DPPR----------------------~G--~-  377 (440)
T PRK13168        330 ERARENARRNGLDNV-------TFYHANLFEDFTDQPWAKGGFDKVLLDPPR----------------------AG--A-  377 (440)
T ss_pred             HHHHHHHHHCCCCCC-------EEEECCHHHHHHHHHHHCCCCCEEEECCCC----------------------CC--H-
T ss_conf             999999997499987-------899746456635578637999989999885----------------------27--8-


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEE
Q ss_conf             4770659999999996146657880799973-89713477644326899999988494-688831767765578861699
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYL  407 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~I  407 (674)
T Consensus       378 ------~~~i~~-l~~~~p-----~~IvYVSCnPaTlA--------RDl~-~L~~~GY~l~~i--~~vDmFP~T~HvE~v  434 (440)
T PRK13168        378 ------FEVMQA-LAKLKP-----KRIVYVSCNPATLA--------RDAG-VLVEAGYRLKRA--GVLDMFPHTGHVESM  434 (440)
T ss_pred             ------HHHHHH-HHHCCC-----CEEEEECCCHHHHH--------HHHH-HHHHCCCEEEEE--EEEECCCCCCEEEEE
T ss_conf             ------999999-984798-----97999938989999--------9999-998789489599--996069999838999


Q ss_pred             EEEEC
Q ss_conf             99946
Q gi|254780836|r  408 WILSN  412 (674)
Q Consensus       408 wil~k  412 (674)
T Consensus       435 all~R  439 (440)
T PRK13168        435 ALFER  439 (440)
T ss_pred             EEEEE
T ss_conf             99983