HHsearch alignment for GI: 254780836 and conserved domain: TIGR01177
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=97.14 E-value=0.00034 Score=46.84 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=77.9
Q ss_pred HHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43899999999-98622766575368179999999973178401101387764031176654046899999999985310
Q gi|254780836|r 155 MSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674)
Q Consensus 155 mG~iyE~LIrk-Fae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674)
T Consensus 159 ~~~~~~~~~~~~~~~~-~p~~~p~~~p~~~~p~~~~~~~~~~------~~~~g~~~~dp~~g~gg~~~~~gl~------- 224 (358)
T TIGR01177 159 LGRLLAERDKEQFGER-KPDRRPFFKPGSLDPKLARALVNLA------GVKEGDRLLDPFCGTGGFLIEAGLL------- 224 (358)
T ss_pred EEHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHH------HCCCCCCEECCCCCCCCHHHHHHHH-------
T ss_conf 4112234201343212-6554643256555546777776542------0246751004222666033233332-------
Q ss_pred CCCCCCEEEECC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CC--CEEEEEEECCCCCCC
Q ss_conf 053332255046-666788999999989808875334566668234754579998-66--418999816856765
Q gi|254780836|r 234 HKIPPILVPHGQ-ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TG--KRFHYCLSNPPFGKK 304 (674)
Q Consensus 234 ~~~~~~~~lyGQ-Ein~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~-~~--~kFD~vlaNPPFg~~ 304 (674)
T Consensus 225 -----g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~g~~ 289 (358)
T TIGR01177 225 -----GAKPIGCGDLDWKLVEGARLNLEHYGIEDK-----VFSVKRGDAKDLPLRLPGLDESVDAIATDPPYGRS 289 (358)
T ss_pred -----CCCCCCCCHHHHHHHCCCHHHHHHCCCCCC-----EEEEEECCCHHCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf -----110002440356764252111333055431-----56764033001110035310112222125654531