HHsearch alignment for GI: 254780836 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=95.61 E-value=0.081 Score=31.33 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=68.4
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 76657536-81799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 171 SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 171 ~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
T Consensus 5 kK~lGQnFL~d~~i~~kIv~~~----------~~~~~d~VlEIGPG~G~-LT~~---L~~~---~-----~~v~aiE~D~ 62 (258)
T pfam00398 5 RRSYGQNFLTNKKVINRIVDKA----------NLQESDTVLEIGPGKGA-LTEE---LAKR---A-----KQVVAIEIDP 62 (258)
T ss_pred CCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHH-HHHH---HHHC---C-----CCEEEEECCH
T ss_conf 5667753138999999999970----------89999979997996239-9999---9961---6-----9479995447
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8899999998980887533456666823475457999866418999816856765
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
T Consensus 63 ~l~~~L~~~~~~---------~~~~~ii~~D~l~~d~~~~~~~-~vvgNLPY~Is 107 (258)
T pfam00398 63 RLAKRLQKKLAL---------HPNVEVVHQDFLKFSFPKHEPF-LVVGNIPYNIT 107 (258)
T ss_pred HHHHHHHHHHCC---------CCCEEEEECCHHCCCCCCCCCE-EEEECCCCCCC
T ss_conf 799999986442---------8977999663010575457861-68944886341