HHsearch alignment for GI: 254780836 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.49 E-value=3.1e-13 Score=105.82 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674)
Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674)
T Consensus 15 ~lAa~l~~la----------~~~~g~~vlDP~CGSGtilIEAa~~~~----------~~~~~G~Did~~~v~~A~~N~~~ 74 (171)
T pfam01170 15 TLARAMVNLA----------GWKPGDPLLDPFCGSGTILIEAALMGA----------NVALYGSDIDRRMVRGARINAEA 74 (171)
T ss_pred HHHHHHHHHH----------CCCCCCEEEECCCCCCHHHHHHHHHHC----------CCCCEEEECCHHHHHHHHHHHHH
T ss_conf 9999999985----------899999788689987899999999613----------58953675879999999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 0887533456666823475457999866418999816856765
Q gi|254780836|r 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
T Consensus 75 ~g~~~~------i~~~~~D~~~l~-~~~~~~d~Iv~nPPYG~r 110 (171)
T pfam01170 75 AGVGDK------IEFVQADAADLP-LLNGSVDTIVTDPPYGIR 110 (171)
T ss_pred HCCCCC------EEEEECCHHHCC-CCCCCCEEEEECCCCCCC
T ss_conf 289984------699976665387-987883189988982011