HHsearch alignment for GI: 254780836 and conserved domain: pfam01170

>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.49  E-value=3.1e-13  Score=105.82  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r  182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI  261 (674)
Q Consensus       182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli  261 (674)
T Consensus        15 ~lAa~l~~la----------~~~~g~~vlDP~CGSGtilIEAa~~~~----------~~~~~G~Did~~~v~~A~~N~~~   74 (171)
T pfam01170        15 TLARAMVNLA----------GWKPGDPLLDPFCGSGTILIEAALMGA----------NVALYGSDIDRRMVRGARINAEA   74 (171)
T ss_pred             HHHHHHHHHH----------CCCCCCEEEECCCCCCHHHHHHHHHHC----------CCCCEEEECCHHHHHHHHHHHHH
T ss_conf             9999999985----------899999788689987899999999613----------58953675879999999999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             0887533456666823475457999866418999816856765
Q gi|254780836|r  262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
T Consensus        75 ~g~~~~------i~~~~~D~~~l~-~~~~~~d~Iv~nPPYG~r  110 (171)
T pfam01170        75 AGVGDK------IEFVQADAADLP-LLNGSVDTIVTDPPYGIR  110 (171)
T ss_pred             HCCCCC------EEEEECCHHHCC-CCCCCCEEEEECCCCCCC
T ss_conf             289984------699976665387-987883189988982011