HHsearch alignment for GI: 254780836 and conserved domain: pfam05958
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=97.06 E-value=0.0019 Score=41.95 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=93.2
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
T Consensus 172 p~sFfQvN~~~~~~l~~~a~~----~~~~~--~~-~vlDlYcG~Gtfsl~lA~~~------------~~V~GvE~~~~AV 232 (353)
T pfam05958 172 ENSFTQPNAAVNIKMLEWACE----VTQGS--KG-DLLELYCGNGNFSLALAQNF------------RRVLATEIAKPSV 232 (353)
T ss_pred CCCEECCCHHHHHHHHHHHHH----HHHCC--CC-CEEEEECCCCHHHHHHHHHC------------CEEEEEECCHHHH
T ss_conf 999778698999999999999----86268--99-58998468888889998647------------8799996259999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC------C---------CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999989808875334566668234754------5---------79998664189998168567653100011123442
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST------L---------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT------L---------~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~ 317 (674)
T Consensus 233 ~~A~~Na~~N~i~Nv~-------f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~vvlDPPR~--------------- 290 (353)
T pfam05958 233 NAAQYNIAANNIDNVQ-------IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA--------------- 290 (353)
T ss_pred HHHHHHHHHCCCCCEE-------EEECCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEECCCCC---------------
T ss_conf 9999989986998649-------997289999998752422332036663224677258489877---------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2666653577774770659999999996146657880799973-897134776443268999999884946888317677
Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 (674)
Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~ 396 (674)
T Consensus 291 -------G--~----~~--~~~~-~i~~~-------~rIvYVSCnP~Tla--------RDl~-~L~~~Y~l~~v--~pvD 336 (353)
T pfam05958 291 -------G--L----DP--DTCK-LVQAY-------ERILYISCNPETLK--------ANLE-QLSETHRVERF--ALFD 336 (353)
T ss_pred -------C--C----HH--HHHH-HHHCC-------CCEEEEECCHHHHH--------HHHH-HHHCCCEEEEE--EEEC
T ss_conf -------7--7----39--9999-98469-------96899948999999--------9999-98406478799--9823
Q ss_pred CCCCCCCCEEEEEEEC
Q ss_conf 6557886169999946
Q gi|254780836|r 397 LFFRTNIATYLWILSN 412 (674)
Q Consensus 397 lFynTgI~t~Iwil~k 412 (674)
T Consensus 337 mFPqT~HvE~V~lL~r 352 (353)
T pfam05958 337 QFPYTHHMECGVLLER 352 (353)
T ss_pred CCCCCCEEEEEEEEEC
T ss_conf 6999971898999980