HHsearch results for GI: 254780836 and protein with PDBid: 1dus_A
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.91 E-value=1e-08 Score=74.98 Aligned_cols=129 Identities=9% Similarity=0.124 Sum_probs=84.6
Q ss_pred CCCCCCCHH---HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 657536817---99999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 173 GAEDFMTPR---DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 173 ~aGeffTPR---~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
.+|- |+|+ ...+++++.+ .+....+|+|.+||||.+.+.+.+ .. -.++|.|+++
T Consensus 28 ~~gv-f~~~~~d~~t~~Ll~~l----------~~~~~~~vLDiGcG~G~~~~~la~-------~~-----~~v~~iDis~ 84 (194)
T 1dus_A 28 DSGV-FSYGKVDKGTKILVENV----------VVDKDDDILDLGCGYGVIGIALAD-------EV-----KSTTMADINR 84 (194)
T ss_dssp ETTS-TTTTSCCHHHHHHHHHC----------CCCTTCEEEEETCTTSHHHHHHGG-------GS-----SEEEEEESCH
T ss_pred CCCC-CCCCCCCHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHH-------HC-----CEEEEEECCH
T ss_conf 8987-68998699999999828----------988999499956964299999997-------38-----8479982636
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88999999989808875334566668234754579998664189998168567653100011123442266665357777
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674)
....+|+.|.-..+++... -.+..+|.+. .+++.+||+|++||||-.. .
T Consensus 85 ~~i~~a~~n~~~~~l~~~~-----i~~~~~D~~~--~~~~~~fD~Ii~~~~~~~~--~---------------------- 133 (194)
T 1dus_A 85 RAIKLAKENIKLNNLDNYD-----IRVVHSDLYE--NVKDRKYNKIITNPPIRAG--K---------------------- 133 (194)
T ss_dssp HHHHHHHHHHHHTTCTTSC-----EEEEECSTTT--TCTTSCEEEEEECCCSTTC--H----------------------
T ss_pred HHHHHHHHHHHHHCCCCCE-----EEEEECCHHH--HCCCCCCCEEEECCCHHCC--C----------------------
T ss_conf 7889999999981999861-----9999873676--3356774399999522116--1----------------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 477065999999999614665788079997389
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
+-...++..+...|++ ||++.+|.+.
T Consensus 134 ---~~~~~~l~~~~~~Lkp----gG~l~i~~~~ 159 (194)
T 1dus_A 134 ---EVLHRIIEEGKELLKD----NGEIWVVIQT 159 (194)
T ss_dssp ---HHHHHHHHHHHHHEEE----EEEEEEEEES
T ss_pred ---HHHHHHHHHHHHHCCC----CCEEEEEEEC
T ss_conf ---5679999999996096----9799999977