HHsearch results for GI: 254780836 and protein with PDBid: 1nkv_A
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.34 E-value=0.0019 Score=40.52 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674)
Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674)
+||. .++++++++- + .| +.+|+|-.||+|+++....+. . ...+.|.|+++...+.|+.
T Consensus 20 ~~~~-~~~~l~~~l~------l--~p--g~rVLDiGcG~G~~~~~la~~-------~----~~~v~gvD~s~~~l~~a~~ 77 (256)
T 1nkv_A 20 FTEE-KYATLGRVLR------M--KP--GTRILDLGSGSGEMLCTWARD-------H----GITGTGIDMSSLFTAQAKR 77 (256)
T ss_dssp CCHH-HHHHHHHHTC------C--CT--TCEEEEETCTTCHHHHHHHHH-------T----CCEEEEEESCHHHHHHHHH
T ss_pred CCHH-HHHHHHHHCC------C--CC--CCEEEEECCCCCHHHHHHHHH-------C----CCEEEEEECCHHHHHHHHH
T ss_conf 8899-9999999708------9--99--999999858888899999986-------4----9989999898367789988
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 98980887533456666823475457999866418999816856
Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674)
+.--.|.... -.+..+|.. +.+++..||.|+++=-+
T Consensus 78 ~~~~~gl~~~------v~~~~~d~~--~~~~~~~fD~v~~~~~~ 113 (256)
T 1nkv_A 78 RAEELGVSER------VHFIHNDAA--GYVANEKCDVAACVGAT 113 (256)
T ss_dssp HHHHTTCTTT------EEEEESCCT--TCCCSSCEEEEEEESCG
T ss_pred HHHHHCCCCC------CCCCCCCHH--HCCCCCCEEEEEEECCE
T ss_conf 6776065544------441136364--50567844699997441