HHsearch results for GI: 254780836 and protein with PDBid: 1o9g_A
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.97 E-value=1.4e-05 Score=54.54 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674)
Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674)
|---|||.+++. ...- .+....+ -.|+||||||+|.||+.-. +. .. ...-.++|-++|++...||..|+
T Consensus 29 P~FPVRLAsEif-qRal-~~~~~~~-p~tlwDPCCGsgYlLTvlg--LL--h~----~~l~~v~aSDVd~~al~LA~~NL 97 (250)
T 1o9g_A 29 PAFPVRLATEIF-QRAL-ARLPGDG-PVTLWDPCCGSGYLLTVLG--LL--HR----RSLRQVIASDVDPAPLELAAKNL 97 (250)
T ss_dssp CCCCHHHHHHHH-HHHH-HTSSCCS-CEEEEETTCTTSHHHHHHH--HH--TG----GGEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HHHH-HHCCCCC-CCEEECCCCCCHHHHHHHH--HH--CH----HHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 885189999999-9999-8636888-7304305777208999998--84--30----57777773358878999988522
Q ss_pred HHH
Q ss_conf 980
Q gi|254780836|r 260 LIR 262 (674)
Q Consensus 260 li~ 262 (674)
.|-
T Consensus 98 ~LL 100 (250)
T 1o9g_A 98 ALL 100 (250)
T ss_dssp HTT
T ss_pred HHC
T ss_conf 111