HHsearch results for GI: 254780836 and protein with PDBid: 1qam_A
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.63 E-value=0.004 Score=38.44 Aligned_cols=172 Identities=9% Similarity=0.056 Sum_probs=95.4
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r 170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
.+++-|||| +-..|++-+|+.+ ......+|.+--||+|.+= .. +.+. . ..+++.|++
T Consensus 4 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~LT-~~---L~~~---~-----~~v~avEiD 61 (244)
T 1qam_A 4 KNIKHSQNFITSKHNIDKIMTNI----------RLNEHDNIFEIGSGKGHFT-LE---LVQR---C-----NFVTAIEID 61 (244)
T ss_dssp ------CCBCCCHHHHHHHHTTC----------CCCTTCEEEEECCTTSHHH-HH---HHHH---S-----SEEEEECSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHH-HH---HHHC---C-----CCEEEEEEC
T ss_conf 98888884147999999999956----------7899997999738871999-99---9855---5-----830699853
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78899999998980887533456666823475457999866418999816856765310001112344226666535777
Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 (674)
Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl 328 (674)
+......+....- . ..-.|..||-|.-|.-.... ..|++|-||+++=
T Consensus 62 ~~l~~~L~~~~~~----~-----~n~~ii~~D~l~~~~~~~~~-~~vv~NLPYnIss----------------------- 108 (244)
T 1qam_A 62 HKLCKTTENKLVD----H-----DNFQVLNKDILQFKFPKNQS-YKIFGNIPYNIST----------------------- 108 (244)
T ss_dssp HHHHHHHHHHTTT----C-----CSEEEECCCGGGCCCCSSCC-CEEEEECCGGGHH-----------------------
T ss_pred HHHHHHHHHHHCC----C-----CCEEEEECHHHCCCCCCCCC-EEEEEECHHHHHH-----------------------
T ss_conf 0177999974144----7-----76577300122256544675-4799743055238-----------------------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCC
Q ss_conf 747706599999999961466578807999738971---347764432689999998849468883176776557-8861
Q gi|254780836|r 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP---LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 (674)
Q Consensus 329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~---LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn-TgI~ 404 (674)
-.|.+++.. .. -.++.+++.--+ | .+..|+ =|-.-++ ..-++-+-..|++.||- -.+-
T Consensus 109 --------~Il~~ll~~--~~---~~~~~~mvQkEvA~Rl-~a~~g~-lsv~~~~---~~~~~~~~~V~~~~F~P~PkVd 170 (244)
T 1qam_A 109 --------DIIRKIVFD--SI---ADEIYLIVEYGFAKRL-LNTKRS-LALFLMA---EVDISILSMVPREYFHPKPKVN 170 (244)
T ss_dssp --------HHHHHHHHS--CC---CSEEEEEEEHHHHHHH-TCTTSH-HHHHHTT---TEEEEEEEEECGGGSBSCCSSC
T ss_pred --------HHHHHHCCC--CC---CCEEEEEEEEHHHHHH-HCCCCC-CHHHHHH---HHHCCCCCCCCHHHCCCCCCCE
T ss_conf --------999875024--43---0003533100123312-302575-2355323---2232234556802056899833
Q ss_pred EEEEEEECCC
Q ss_conf 6999994688
Q gi|254780836|r 405 TYLWILSNRK 414 (674)
Q Consensus 405 t~Iwil~k~K 414 (674)
.++.-|..++
T Consensus 171 S~vi~l~~k~ 180 (244)
T 1qam_A 171 SSLIRLNRKK 180 (244)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEECC
T ss_conf 8999999789