HHsearch results for GI: 254780836 and protein with PDBid: 1qam_A

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.63  E-value=0.004  Score=38.44  Aligned_cols=172  Identities=9%  Similarity=0.056  Sum_probs=95.4

Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r  170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      .+++-|||| +-..|++-+|+.+          ......+|.+--||+|.+= ..   +.+.   .     ..+++.|++
T Consensus         4 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~LT-~~---L~~~---~-----~~v~avEiD   61 (244)
T 1qam_A            4 KNIKHSQNFITSKHNIDKIMTNI----------RLNEHDNIFEIGSGKGHFT-LE---LVQR---C-----NFVTAIEID   61 (244)
T ss_dssp             ------CCBCCCHHHHHHHHTTC----------CCCTTCEEEEECCTTSHHH-HH---HHHH---S-----SEEEEECSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHH-HH---HHHC---C-----CCEEEEEEC
T ss_conf             98888884147999999999956----------7899997999738871999-99---9855---5-----830699853


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             78899999998980887533456666823475457999866418999816856765310001112344226666535777
Q gi|254780836|r  249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL  328 (674)
Q Consensus       249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl  328 (674)
                      +......+....-    .     ..-.|..||-|.-|.-.... ..|++|-||+++=                       
T Consensus        62 ~~l~~~L~~~~~~----~-----~n~~ii~~D~l~~~~~~~~~-~~vv~NLPYnIss-----------------------  108 (244)
T 1qam_A           62 HKLCKTTENKLVD----H-----DNFQVLNKDILQFKFPKNQS-YKIFGNIPYNIST-----------------------  108 (244)
T ss_dssp             HHHHHHHHHHTTT----C-----CSEEEECCCGGGCCCCSSCC-CEEEEECCGGGHH-----------------------
T ss_pred             HHHHHHHHHHHCC----C-----CCEEEEECHHHCCCCCCCCC-EEEEEECHHHHHH-----------------------
T ss_conf             0177999974144----7-----76577300122256544675-4799743055238-----------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCC
Q ss_conf             747706599999999961466578807999738971---347764432689999998849468883176776557-8861
Q gi|254780836|r  329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP---LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA  404 (674)
Q Consensus       329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~---LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn-TgI~  404 (674)
                              -.|.+++..  ..   -.++.+++.--+   | .+..|+ =|-.-++   ..-++-+-..|++.||- -.+-
T Consensus       109 --------~Il~~ll~~--~~---~~~~~~mvQkEvA~Rl-~a~~g~-lsv~~~~---~~~~~~~~~V~~~~F~P~PkVd  170 (244)
T 1qam_A          109 --------DIIRKIVFD--SI---ADEIYLIVEYGFAKRL-LNTKRS-LALFLMA---EVDISILSMVPREYFHPKPKVN  170 (244)
T ss_dssp             --------HHHHHHHHS--CC---CSEEEEEEEHHHHHHH-TCTTSH-HHHHHTT---TEEEEEEEEECGGGSBSCCSSC
T ss_pred             --------HHHHHHCCC--CC---CCEEEEEEEEHHHHHH-HCCCCC-CHHHHHH---HHHCCCCCCCCHHHCCCCCCCE
T ss_conf             --------999875024--43---0003533100123312-302575-2355323---2232234556802056899833


Q ss_pred             EEEEEEECCC
Q ss_conf             6999994688
Q gi|254780836|r  405 TYLWILSNRK  414 (674)
Q Consensus       405 t~Iwil~k~K  414 (674)
                      .++.-|..++
T Consensus       171 S~vi~l~~k~  180 (244)
T 1qam_A          171 SSLIRLNRKK  180 (244)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEECC
T ss_conf             8999999789