HHsearch results for GI: 254780836 and protein with PDBid: 1vlm_A
>1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41
Probab=96.91 E-value=0.0033 Score=38.99 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH----HHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 611443899999999986227665753681799----9999997317840110138776403117665404689999999
Q gi|254780836|r 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV----VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 (674)
Q Consensus 151 ~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~V----i~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~ 226 (674)
+.+.|..+|+..-.++..-. -+++.+ ++++..+ .|+ .+|+|-.||||.|+...
T Consensus 9 ~~~~~~~~Fd~~a~~Yd~~~-------~~~~~~~~~~~~~~~~~-----------~~~--~~vLDiGcGtG~~~~~l--- 65 (219)
T 1vlm_A 9 HHHHMWHIFERFVNEYERWF-------LVHRFAYLSELQAVKCL-----------LPE--GRGVEIGVGTGRFAVPL--- 65 (219)
T ss_dssp ---CTTHHHHHTHHHHHHHH-------HHTHHHHHHHHHHHHHH-----------CCS--SCEEEETCTTSTTHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC-----------CCC--CEEEEECCCCCHHHHHH---
T ss_conf 03599999999999999998-------87589999999999723-----------899--90999858677999977---
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 99853100533322550466667889999999898088753345666682347545799986641899981685676531
Q gi|254780836|r 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 (674)
Q Consensus 227 i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk 306 (674)
. ..+|.|+++..-+.|+.+ ++. ...+|. .+-.+++.+||+|+++= ...|-
T Consensus 66 -------~------~~~giD~s~~~i~~a~~~----~i~----------~~~~d~-~~l~~~~~sfD~V~~~~--vl~~~ 115 (219)
T 1vlm_A 66 -------K------IKIGVEPSERMAEIARKR----GVF----------VLKGTA-ENLPLKDESFDFALMVT--TICFV 115 (219)
T ss_dssp -------T------CCEEEESCHHHHHHHHHT----TCE----------EEECBT-TBCCSCTTCEEEEEEES--CGGGS
T ss_pred -------H------HEEEEECCHHHHHHHHHC----CCE----------EEECCH-HHCCCCCCCCCEECCCC--CHHHH
T ss_conf -------5------869994999999999986----998----------998777-87899878733203132--01553
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 0001112344226666535777747706599999999961466578807999738
Q gi|254780836|r 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674)
Q Consensus 307 ~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674)
.+. ..+|+.+..-|+| ||++.+..+
T Consensus 116 ~d~--------------------------~~~l~e~~r~Lkp----gG~l~i~~~ 140 (219)
T 1vlm_A 116 DDP--------------------------ERALKEAYRILKK----GGYLIVGIV 140 (219)
T ss_dssp SCH--------------------------HHHHHHHHHHEEE----EEEEEEEEE
T ss_pred CCH--------------------------HHHHHHHHHHCCC----CCEEEEEEC
T ss_conf 489--------------------------9999999998586----828999976