HHsearch results for GI: 254780836 and protein with PDBid: 1yub_A
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=95.82 E-value=0.011 Score=35.58 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=66.0
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r 170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
.+++-||+| +-..|++-+++.+ ......+|.+--||+|.+ |.. +.+.+ ..+++.|++
T Consensus 3 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~L-T~~---L~~~~--------~~v~aiE~D 60 (245)
T 1yub_A 3 KNIKYSQNFLTSEKVLNQIIKQL----------NLKETDTVYEIGTGKGHL-TTK---LAKIS--------KQVTSIELD 60 (245)
T ss_dssp CCCCSCCCBCCCTTTHHHHHHHC----------CCCSSEEEEECSCCCSSC-SHH---HHHHS--------SEEEESSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHHCC--------CCCEEECCC
T ss_conf 99887871478989999999945----------899999689979973599-999---99616--------500403404
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 78899999998980887533456666823475457999866418999816856765
Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
+..+..++.. ......-.|..||-|.-|. +......|++|-||+.+
T Consensus 61 ~~l~~~l~~~---------~~~~~n~~ii~~D~l~~~~-~~~~~~~vv~NLPY~Is 106 (245)
T 1yub_A 61 SHLFNLSSEK---------LKLNTRVTLIHQDILQFQF-PNKQRYKIVGNIPYHLS 106 (245)
T ss_dssp CSSSSSSSCT---------TTTCSEEEECCSCCTTTTC-CCSSEEEEEEECCSSSC
T ss_pred HHHHHHHHHH---------HHCCCCCHHHHCCHHCCCC-CCCCCEEEEECCCHHHH
T ss_conf 4668988755---------4113400022011000144-45786568716757876