HHsearch results for GI: 254780836 and protein with PDBid: 1yub_A

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=95.82  E-value=0.011  Score=35.58  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=66.0

Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r  170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      .+++-||+| +-..|++-+++.+          ......+|.+--||+|.+ |..   +.+.+        ..+++.|++
T Consensus         3 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~L-T~~---L~~~~--------~~v~aiE~D   60 (245)
T 1yub_A            3 KNIKYSQNFLTSEKVLNQIIKQL----------NLKETDTVYEIGTGKGHL-TTK---LAKIS--------KQVTSIELD   60 (245)
T ss_dssp             CCCCSCCCBCCCTTTHHHHHHHC----------CCCSSEEEEECSCCCSSC-SHH---HHHHS--------SEEEESSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHHCC--------CCCEEECCC
T ss_conf             99887871478989999999945----------899999689979973599-999---99616--------500403404


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             78899999998980887533456666823475457999866418999816856765
Q gi|254780836|r  249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      +..+..++..         ......-.|..||-|.-|. +......|++|-||+.+
T Consensus        61 ~~l~~~l~~~---------~~~~~n~~ii~~D~l~~~~-~~~~~~~vv~NLPY~Is  106 (245)
T 1yub_A           61 SHLFNLSSEK---------LKLNTRVTLIHQDILQFQF-PNKQRYKIVGNIPYHLS  106 (245)
T ss_dssp             CSSSSSSSCT---------TTTCSEEEECCSCCTTTTC-CCSSEEEEEEECCSSSC
T ss_pred             HHHHHHHHHH---------HHCCCCCHHHHCCHHCCCC-CCCCCEEEEECCCHHHH
T ss_conf             4668988755---------4113400022011000144-45786568716757876