HHsearch results for GI: 254780836 and protein with PDBid: 2dul_A
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.86 E-value=0.017 Score=34.42 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=63.3
Q ss_pred CCCCCCCCHHH-----HHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 66575368179-----9999999731784011013877640311766540468999999999853100533322550466
Q gi|254780836|r 172 EGAEDFMTPRD-----VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 (674)
Q Consensus 172 ~~aGeffTPR~-----Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE 246 (674)
+++.=||-|+. +.-++++.. ++ .+|+|+.||||.. +..|.++.+. ..++..|
T Consensus 22 ~~~~vFYNp~~~~nRDlsv~~~~~~----------~~---~~iLD~~sasG~r---~iRya~E~~~-------~~V~~nD 78 (378)
T 2dul_A 22 YDSPVFYNPRMALNRDIVVVLLNIL----------NP---KIVLDALSATGIR---GIRFALETPA-------EEVWLND 78 (378)
T ss_dssp ---CCCCCGGGHHHHHHHHHHHHHH----------CC---SEEEESSCTTSHH---HHHHHHHSSC-------SEEEEEE
T ss_pred CCCCEECCHHHHHHHHHHHHHHHHH----------CC---CEEEECCCCCHHH---HHHHHHHCCC-------CEEEEEE
T ss_conf 6686040866764316999999982----------99---9899978872299---9999985899-------8899996
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCC------CC--CCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 66788999999989808875334566------66--823475457999866418999816856765
Q gi|254780836|r 247 LEPETHAVCVAGMLIRRLESDPRRDL------SK--NIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 247 in~~tyaIak~nMli~g~~~d~~~~~------~~--NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
+|+.+..+.+.|+-+.++........ .. .+..+|...--.-...+||+|--+| ||..
T Consensus 79 i~~~A~~~i~~N~~~N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~~DvIDiDP-fGsp 143 (378)
T 2dul_A 79 ISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-FGSP 143 (378)
T ss_dssp SCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-SSCC
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEECCCC-CCCH
T ss_conf 9989999999999970865334333433224554367521127889874478774331389-9981