HHsearch results for GI: 254780836 and protein with PDBid: 2ipx_A
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=96.34 E-value=0.055 Score=31.03 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
-|+ =++|.+.|+- ..+ .+ ...++.+|+|-.||||.+.+...+.+. ....+||.|+++...+.++..
T Consensus 56 ~p~-rsklaaai~~-~l~-~l--~lkpG~~VLDlG~G~G~~~~~la~~vg---------~~G~V~aVD~s~~~l~~a~~~ 121 (233)
T 2ipx_A 56 NPF-RSKLAAAILG-GVD-QI--HIKPGAKVLYLGAASGTTVSHVSDIVG---------PDGLVYAVEFSHRSGRDLINL 121 (233)
T ss_dssp CTT-TCHHHHHHHT-TCS-CC--CCCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEECCCHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHH-CHH-HC--CCCCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHH
T ss_conf 786-1299999984-555-25--999999999965768989999999859---------996799997999999999997
Q ss_pred HHHHCCCCCCCCCCCCCCC--CCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 8980887533456666823--47545--7999866418999816856765310001112344226666535777747706
Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQ--QGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674)
Q Consensus 259 Mli~g~~~d~~~~~~~NI~--~GdTL--~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674)
.--+ .||. .+|.- ....+....||+++++.+.-- +
T Consensus 122 a~~~-----------~ni~~i~~d~~~~~~~~~~~~~vd~i~~~~~~~~-----------------------------~- 160 (233)
T 2ipx_A 122 AKKR-----------TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPD-----------------------------Q- 160 (233)
T ss_dssp HHHC-----------TTEEEECSCTTCGGGGGGGCCCEEEEEECCCCTT-----------------------------H-
T ss_pred HHHC-----------CCCCEEEEECCCCHHCCCCCCEEEEEECCCCCCH-----------------------------H-
T ss_conf 5514-----------6664289753670111566526888531422651-----------------------------5-
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 59999999996146657880799973
Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVL 360 (674)
Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674)
.-.++.++...||+ ||+..|+.
T Consensus 161 ~~~~l~~~~r~LKp----GG~lvi~~ 182 (233)
T 2ipx_A 161 TRIVALNAHTFLRN----GGHFVISI 182 (233)
T ss_dssp HHHHHHHHHHHEEE----EEEEEEEE
T ss_pred HHHHHHHHHHHCCC----CCEEEEEE
T ss_conf 99999999985689----86799998