HHsearch results for GI: 254780836 and protein with PDBid: 2jjq_A

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.07  E-value=0.017  Score=34.37  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCCCCCH-HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             5753681-799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFMTP-RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeffTP-R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      +|-||-+ +.....|++.+.    +.   .++  ..|+|=.||+|.|=....+       ..     ..++|.|.++.+.
T Consensus       267 p~sF~Q~N~~~~~~L~~~v~----~~---~~~--~~vlDLycG~G~fsl~LA~-------~~-----~~V~gvE~~~~av  325 (425)
T 2jjq_A          267 PNSFFQTNSYQAVNLVRKVS----EL---VEG--EKILDMYSGVGTFGIYLAK-------RG-----FNVKGFDSNEFAI  325 (425)
T ss_dssp             TTSCCCSBHHHHHHHHHHHH----HH---CCS--SEEEEETCTTTHHHHHHHH-------TT-----CEEEEEESCHHHH
T ss_pred             CCHHHHHCHHHHHHHHHHHH----CC---CCC--CEEEECCCCCCHHHHHHHH-------CC-----CEEEEEECCHHHH
T ss_conf             77043315576754212222----03---687--7787626786688899874-------28-----5545750468889


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             999999898088753345666682347545799986641899981685
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP  300 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPP  300 (674)
                      .-|+.|.-+.+++....       ..++.    ......||.|+.+||
T Consensus       326 ~~A~~na~~n~~~~~~~-------~~~~~----~~~~~~~D~vvlDPP  362 (425)
T 2jjq_A          326 EMARRNVEINNVDAEFE-------VASDR----EVSVKGFDTVIVDPP  362 (425)
T ss_dssp             HHHHHHHHHHTCCEEEE-------ECCTT----TCCCTTCSEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEE-------EHHHH----HHHHCCCCEEEECCC
T ss_conf             99999898779707986-------40113----443069999999998