HHsearch results for GI: 254780836 and protein with PDBid: 2okc_A
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=100.00 E-value=0 Score=597.19 Aligned_cols=406 Identities=21% Similarity=0.342 Sum_probs=316.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC-CCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 9841017888999999999874068-883430872305489998967412339999999972024688967876533896
Q gi|254780836|r 1 MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79 (674)
Q Consensus 1 M~~~~~t~s~L~s~iW~~Ad~LRg~-~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~ 79 (674)
|+.++.|+++|+++||++||.|||+ +++++|..+|++|+|||++++..+ .....
T Consensus 2 m~~~~~~~~~l~~~iW~~ad~lRg~g~~~~~y~~~i~~llflK~~~e~~~-----------~~~~~-------------- 56 (445)
T 2okc_A 2 MATNSSTEQSLTKKVWNLATTLAGQGIGFTDYITQLTYLLFLKMDAENVE-----------MFGEE-------------- 56 (445)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-----------HTCCC--------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------HHCCC--------------
T ss_conf 88775009999999999999964799988899999999998777151124-----------44450--------------
Q ss_pred CCCCCCCCHHHH---HHHHHHHHHH---HHHHHHCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 103680368861---3455899999---9997529998999871772357754442362899998740245673337611
Q gi|254780836|r 80 FYNTSEYSLSTL---GSTNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 (674)
Q Consensus 80 F~n~s~~~~~~l---~~~~~~~nl~---~yi~gfS~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~ 153 (674)
+..++.+.|..+ ...++...+. .++...+..+++||.+.. .++.+...|..||++|+.++++. .+.+
T Consensus 57 ~~~p~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~-----~~~~~~~~L~~~i~~i~~~~~~~--~~~d 129 (445)
T 2okc_A 57 SAIPTGYQWADLIAFDGLDLVKQYEETLKLLSELDNLIGTIYTKAQ-----NKIDKPVYLKKVITMIDEEQWLI--MDGD 129 (445)
T ss_dssp CSSCTTCSHHHHHTCCSHHHHHHHHHHHHHHHTSCHHHHHHTTTCC-----CCCCCHHHHHHHHHHHHTSCCTT--SCSH
T ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHCCC--CCCH
T ss_conf 1499778589987165077999999999986864416755234555-----35587689999999864551356--7821
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 44389999999998622766575368179999999973178401101387764031176654046899999999985310
Q gi|254780836|r 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674)
Q Consensus 154 ~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674)
.||++||+||++|++++++++|||||||+|+++||+++ .|....+||||||||||||+++.+++.+.+..
T Consensus 130 ~~G~~yE~ll~~~a~~~~k~~GqffTP~~Iv~~mv~ll----------~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~ 199 (445)
T 2okc_A 130 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSAS 199 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHH----------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-C
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC----------CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 75899999999998752543804659899999999760----------79999978127889766599999999873122
Q ss_pred CCC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
Q ss_conf 053---33225504666678899999998980887533456666823475457999866418999816856765310001
Q gi|254780836|r 234 HKI---PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 (674)
Q Consensus 234 ~~~---~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~ 310 (674)
... ....++||||+++.++++|+|||++||.... ..+|..+|++..+ +..+||+||+|||||..|.....
T Consensus 200 ~~~~~~~~~~~i~G~e~~~~~~~la~~nl~l~~~~~~-----~~~i~~~d~~~~~--~~~~fD~Ii~NPPf~~~~~~~~~ 272 (445)
T 2okc_A 200 KEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD-----RSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVD 272 (445)
T ss_dssp CHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS-----CCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCC
T ss_pred HHHHHHHHHHCEECEECCHHHHHHHHHHCCCCCCCCC-----CCEEECCCHHHHC--CCCCCCEEECCCCCCCCCCCCCC
T ss_conf 7777553010142341209999999962310277643-----2012215303202--43468722458997888655331
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 11234422666653577774770659999999996146657880799973897134776443268999999884946888
Q gi|254780836|r 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 (674)
Q Consensus 311 ~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaI 390 (674)
..|+.. .++.++++++||+|+++.|++ |||+|+|+|.|+||++++ +..||++|++++.|+||
T Consensus 273 ----------~~~~~~-~~~~~~~~~~Fi~~~l~~Lk~----~G~~aiIvP~~~L~~~~~---~~~iR~~Ll~~~~i~~I 334 (445)
T 2okc_A 273 ----------INRPDF-YVETKNNQLNFLQHMMLMLKT----GGRAAVVLPDNVLFEAGA---GETIRKRLLQDFNLHTI 334 (445)
T ss_dssp ----------CCCTTS-SSCCSCHHHHHHHHHHHHEEE----EEEEEEEEEHHHHHCSTH---HHHHHHHHHHHEEEEEE
T ss_pred ----------CCHHHH-CCCCCCHHHHHHHHHHHHHCC----CCEEEEEECCHHHHCCCH---HHHHHHHHHHCCCCEEE
T ss_conf ----------022443-012330779999999998217----985999934288647630---58999999981985289
Q ss_pred EECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 31767765578861699999468874348838997236776576404664420698999999999972102541047444
Q gi|254780836|r 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 (674)
Q Consensus 391 I~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e~e~ski~~~ 470 (674)
|.||.++|++||++||||||+|+|+.+ +|+||||+..|.+ +.++|.|+++||++|+++|.++++..... .+
T Consensus 335 i~lp~~~F~~t~v~t~Ilvl~K~k~~~---~V~fid~~~~~~~----~~~~n~l~~~~i~~i~~~~~~~~~~~~~~--~~ 405 (445)
T 2okc_A 335 LRLPTGIFYAQGVKANVLFFSKGQPTK---EIWFYDYRTDIKH----TLATNKLERHHLDDFVSCYNNRVEIYDAE--NN 405 (445)
T ss_dssp EECCSSSSSSTTCCEEEEEEEESSCCS---EEEEEECSTTCCC----CSSSSCCCGGGGHHHHHHHHSCCCCCBTT--TB
T ss_pred EECCCCCCCCCCCCEEEEEEECCCCCC---CEEEEECCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CC
T ss_conf 999725546899965999998999987---3799987443331----35778699999999999998677654202--47
Q ss_pred CCCCEEEEEEEC
Q ss_conf 663057899720
Q gi|254780836|r 471 RTFGYRRIKVLR 482 (674)
Q Consensus 471 ~~Fgy~~vtver 482 (674)
.+.-++.|+++.
T Consensus 406 ~~~~~~~v~~~e 417 (445)
T 2okc_A 406 PQGRWRKYPVDE 417 (445)
T ss_dssp TTCSEEEEEHHH
T ss_pred CCCCEEEEEHHH
T ss_conf 677179801999