HHsearch results for GI: 254780836 and protein with PDBid: 2pjd_A

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.84  E-value=2.7e-08  Score=72.23  Aligned_cols=123  Identities=20%  Similarity=0.280  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r  182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI  261 (674)
Q Consensus       182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli  261 (674)
                      .-.+|+.+-+          .+....+|.|.+||+|.+...+...    ++.      ..+.|.|+++.....|+.|+-.
T Consensus       183 ~gt~lLl~~l----------~~~~~~~VLDlGcG~G~l~~~la~~----~p~------~~v~~vD~s~~al~~ar~n~~~  242 (343)
T 2pjd_A          183 VGSQLLLSTL----------TPHTKGKVLDVGCGAGVLSVAFARH----SPK------IRLTLCDVSAPAVEASRATLAA  242 (343)
T ss_dssp             HHHHHHHHHS----------CTTCCSBCCBTTCTTSHHHHHHHHH----CTT------CBCEEEESBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHH----CCC------CEEEEEECCHHHHHHHHHHHHH
T ss_conf             9999999856----------5058982999325277999999997----899------7899998999999999999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             08875334566668234754579998664189998168567653100011123442266665357777477065999999
Q gi|254780836|r  262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH  341 (674)
Q Consensus       262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh  341 (674)
                      .|...        .+..+|.++..   ..+||.|++||||-..-.     +..                  +--.-|+..
T Consensus       243 n~l~~--------~~~~~d~~~~~---~~~fD~Iv~NpPfh~g~~-----~~~------------------~~~~~~i~~  288 (343)
T 2pjd_A          243 NGVEG--------EVFASNVFSEV---KGRFDMIISNPPFHDGMQ-----TSL------------------DAAQTLIRG  288 (343)
T ss_dssp             TTCCC--------EEEECSTTTTC---CSCEEEEEECCCCCSSSH-----HHH------------------HHHHHHHHH
T ss_pred             CCCCE--------EEEECCCHHCC---CCCCCEEEECCCCCCCCC-----CCH------------------HHHHHHHHH
T ss_conf             49937--------99964401226---655458998875011444-----688------------------999999999


Q ss_pred             HHHHHCCCCCCCCEEEEECCC
Q ss_conf             999614665788079997389
Q gi|254780836|r  342 LANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       342 ~i~klk~~~~~ggr~aIV~ng  362 (674)
                      ....|++    ||++-||.|.
T Consensus       289 a~~~Lkp----gG~l~iV~n~  305 (343)
T 2pjd_A          289 AVRHLNS----GGELRIVANA  305 (343)
T ss_dssp             HGGGEEE----EEEEEEEEET
T ss_pred             HHHHCCC----CCEEEEEEEC
T ss_conf             9986585----8199999967