HHsearch results for GI: 254780836 and protein with PDBid: 2pjd_A
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.84 E-value=2.7e-08 Score=72.23 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=80.2
Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674)
Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674)
.-.+|+.+-+ .+....+|.|.+||+|.+...+... ++. ..+.|.|+++.....|+.|+-.
T Consensus 183 ~gt~lLl~~l----------~~~~~~~VLDlGcG~G~l~~~la~~----~p~------~~v~~vD~s~~al~~ar~n~~~ 242 (343)
T 2pjd_A 183 VGSQLLLSTL----------TPHTKGKVLDVGCGAGVLSVAFARH----SPK------IRLTLCDVSAPAVEASRATLAA 242 (343)
T ss_dssp HHHHHHHHHS----------CTTCCSBCCBTTCTTSHHHHHHHHH----CTT------CBCEEEESBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHH----CCC------CEEEEEECCHHHHHHHHHHHHH
T ss_conf 9999999856----------5058982999325277999999997----899------7899998999999999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 08875334566668234754579998664189998168567653100011123442266665357777477065999999
Q gi|254780836|r 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 (674)
Q Consensus 262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh 341 (674)
.|... .+..+|.++.. ..+||.|++||||-..-. +.. +--.-|+..
T Consensus 243 n~l~~--------~~~~~d~~~~~---~~~fD~Iv~NpPfh~g~~-----~~~------------------~~~~~~i~~ 288 (343)
T 2pjd_A 243 NGVEG--------EVFASNVFSEV---KGRFDMIISNPPFHDGMQ-----TSL------------------DAAQTLIRG 288 (343)
T ss_dssp TTCCC--------EEEECSTTTTC---CSCEEEEEECCCCCSSSH-----HHH------------------HHHHHHHHH
T ss_pred CCCCE--------EEEECCCHHCC---CCCCCEEEECCCCCCCCC-----CCH------------------HHHHHHHHH
T ss_conf 49937--------99964401226---655458998875011444-----688------------------999999999
Q ss_pred HHHHHCCCCCCCCEEEEECCC
Q ss_conf 999614665788079997389
Q gi|254780836|r 342 LANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 342 ~i~klk~~~~~ggr~aIV~ng 362 (674)
....|++ ||++-||.|.
T Consensus 289 a~~~Lkp----gG~l~iV~n~ 305 (343)
T 2pjd_A 289 AVRHLNS----GGELRIVANA 305 (343)
T ss_dssp HGGGEEE----EEEEEEEEET
T ss_pred HHHHCCC----CCEEEEEEEC
T ss_conf 9986585----8199999967