HHsearch results for GI: 254780836 and protein with PDBid: 2vdw_A
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=94.42 E-value=0.038 Score=32.05 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=60.6
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH--HHCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 4031176654046899999999985310053332255046666788999999989--80887533-45666682347545
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML--IRRLESDP-RRDLSKNIQQGSTL 282 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl--i~g~~~d~-~~~~~~NI~~GdTL 282 (674)
..+|+|-|||.||-|. ++++ .+ ...+.|.++++++...|+.-.- -.+..... ..+.......+|.+
T Consensus 49 ~~~VLDlgcG~GgDl~---K~~~-----~~---~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~~~~~~~~~~~~~~~d~~ 117 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLE---KYFY-----GE---IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF 117 (302)
T ss_dssp CCEEEETTCTTTTTHH---HHHH-----TT---CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH
T ss_pred CCEEEEEEEEECHHHH---HHHH-----CC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCHH
T ss_conf 9979999500045279---9996-----69---98899997989999999999997212433100013305999861132
Q ss_pred CC---CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE-
Q ss_conf 79---99866418999816856765310001112344226666535777747706599999999961466578807999-
Q gi|254780836|r 283 SK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI- 358 (674)
Q Consensus 283 ~~---d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI- 358 (674)
.. ..+++.+||+|.+.--+- +--+ | .. ...|++++-..|+| ||+..+
T Consensus 118 ~~~~~~~~~~~~FDvVs~qfalH--y~f~--------------------~-~~--~~~~l~ni~~~Lkp----gG~fi~t 168 (302)
T 2vdw_A 118 VSSVREVFYFGKFNIIDWQFAIH--YSFH--------------------P-RH--YATVMNNLSELTAS----GGKVLIT 168 (302)
T ss_dssp HHHHHTTCCSSCEEEEEEESCGG--GTCS--------------------T-TT--HHHHHHHHHHHEEE----EEEEEEE
T ss_pred HHHHHHHCCCCCEEEEEECCHHH--HHCC--------------------C-HH--HHHHHHHHHHHCCC----CCEEEEE
T ss_conf 44455304789756999814065--6088--------------------5-89--99999999961389----9689999
Q ss_pred ECCC
Q ss_conf 7389
Q gi|254780836|r 359 VLSS 362 (674)
Q Consensus 359 V~ng 362 (674)
+++|
T Consensus 169 ~~~~ 172 (302)
T 2vdw_A 169 TMDG 172 (302)
T ss_dssp EECH
T ss_pred ECCH
T ss_conf 8069