HHsearch results for GI: 254780836 and protein with PDBid: 3dmg_A
>3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.74 E-value=1.1e-07 Score=68.23 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=79.1
Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674)
Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674)
.-.+++.+.+.. .+...+....+|.|.+||||.+.....+ .+ ..++|.|+++...++|+.|+-.
T Consensus 214 ~gs~~ll~~l~~----~~~~~~~~g~~VLDlGcG~G~~~~~la~----~~--------~~v~~vD~s~~~l~~a~~~~~~ 277 (381)
T 3dmg_A 214 PASLLLLEALQE----RLGPEGVRGRQVLDLGAGYGALTLPLAR----MG--------AEVVGVEDDLASVLSLQKGLEA 277 (381)
T ss_dssp HHHHHHHHHHHH----HHCTTTTTTCEEEEETCTTSTTHHHHHH----TT--------CEEEEEESBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHCCCCCCCCEEEEEEEECCHHHHHHHH----CC--------CEEECCCCCHHHHHHHHHHHHH
T ss_conf 899999998787----5266689999899996010488897675----19--------8874146999999999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 08875334566668234754579998664189998168567653100011123442266665357777477065999999
Q gi|254780836|r 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 (674)
Q Consensus 262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh 341 (674)
.+.+.. +..+|... ..+...+||+|++||||-..-..+ + .+ .-.|++.
T Consensus 278 ~~~~~~--------~~~~d~~~-~~~~~~~fD~Iv~n~~~h~~~~~~--------------------~--~~-~~~~l~~ 325 (381)
T 3dmg_A 278 NALKAQ--------ALHSDVDE-ALTEEARFDIIVTNPPFHVGGAVI--------------------L--DV-AQAFVNV 325 (381)
T ss_dssp TTCCCE--------EEECSTTT-TSCTTCCEEEEEECCCCCTTCSSC--------------------C--HH-HHHHHHH
T ss_pred CCCCEE--------EEECCCCC-CCCCCCCEEEEEECCCHHHCCCCC--------------------H--HH-HHHHHHH
T ss_conf 299738--------85301001-446679868999893245334368--------------------8--99-9999999
Q ss_pred HHHHHCCCCCCCCEEEEECCC
Q ss_conf 999614665788079997389
Q gi|254780836|r 342 LANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 342 ~i~klk~~~~~ggr~aIV~ng 362 (674)
+...||| ||++.+|.|-
T Consensus 326 ~~~~Lkp----GG~l~iv~n~ 342 (381)
T 3dmg_A 326 AAARLRP----GGVFFLVSNP 342 (381)
T ss_dssp HHHHEEE----EEEEEEEECT
T ss_pred HHHHCCC----CCEEEEEECC
T ss_conf 9987584----8489999738