HHsearch results for GI: 254780836 and protein with PDBid: 3id6_C
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B*
Probab=95.81 E-value=0.097 Score=29.41 Aligned_cols=162 Identities=10% Similarity=-0.044 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674)
Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674)
+-|+ -++|-+.|+- +.+. + ...++.+|+|=.||||.+.+...+++. ....+||.|+++...+.++.
T Consensus 54 w~p~-rSklaaai~~-gl~~-~--~lkpG~~VLdLG~G~G~~~~~la~~Vg---------~~G~V~aVD~s~~~l~~a~~ 119 (232)
T 3id6_C 54 WNAF-RSKLAGAILK-GLKT-N--PIRKGTKVLYLGAASGTTISHVSDIIE---------LNGKAYGVEFSPRVVRELLL 119 (232)
T ss_dssp CCTT-TCHHHHHHHT-TCSC-C--SCCTTCEEEEETCTTSHHHHHHHHHHT---------TTSEEEEEECCHHHHHHHHH
T ss_pred ECCC-CCHHHHHHHH-HHHH-C--CCCCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHH
T ss_conf 7875-0289999984-3330-5--889999999967718899999999715---------68769999799999999997
Q ss_pred HHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 98980887533456666823-47545799986641899981685676531000111234422666653577774770659
Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 (674)
Q Consensus 258 nMli~g~~~d~~~~~~~NI~-~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~ 336 (674)
..--++... ++. .........+....||+|...-.+-- + .-
T Consensus 120 ~a~~~~n~~--------~v~~d~~~~~~~~~~~~~vd~i~~~~~~~~-----------------------------~-~~ 161 (232)
T 3id6_C 120 VAQRRPNIF--------PLLADARFPQSYKSVVENVDVLYVDIAQPD-----------------------------Q-TD 161 (232)
T ss_dssp HHHHCTTEE--------EEECCTTCGGGTTTTCCCEEEEEECCCCTT-----------------------------H-HH
T ss_pred HHHHCCCCC--------CEEECCCCHHHCCCCCCEEEEEEEECCCCC-----------------------------H-HH
T ss_conf 656546776--------301014675453777736999998525732-----------------------------1-99
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCC-CCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 99999999614665788079997389-713477644326899999988494-688831767
Q gi|254780836|r 337 LFLMHLANKLELPPNGGGRAAIVLSS-SPLFNGRAGSGESEIRRWLLENDL-IEAIVALPT 395 (674)
Q Consensus 337 lFlqh~i~klk~~~~~ggr~aIV~ng-s~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~ 395 (674)
.|+.++...||| ||+..|+... |.--+++...--....+.|-+.++ +.-+|.|.+
T Consensus 162 ~~l~~~~~~LKp----gG~lvi~~k~~~~d~~~~~~~~~~~~i~~L~~~GF~~~E~i~L~p 218 (232)
T 3id6_C 162 IAIYNAKFFLKV----NGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP 218 (232)
T ss_dssp HHHHHHHHHEEE----EEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHCCC----CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999851589----978999997454668787668999999999985997999964788