HHsearch results for GI: 254780836 and protein with PDBid: 3lkd_A
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=100.00 E-value=0 Score=698.81 Aligned_cols=435 Identities=25% Similarity=0.396 Sum_probs=342.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHH-----------HHHC-CCCCCC
Q ss_conf 9841017888999999999874068883430872305489998967412339999999-----------9720-246889
Q gi|254780836|r 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----------YLAF-GGSNID 68 (674)
Q Consensus 1 M~~~~~t~s~L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~-----------~~~~-~~~~~~ 68 (674)
|++...|.++|.|+||++||.|||.|++++|++|||||+|||||+|.++....++.++ +... ......
T Consensus 1 m~~~~~t~~~L~s~lW~~ad~LRg~~~~~~Yk~~il~llFlK~lsD~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (542)
T 3lkd_A 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEETESLDEALAVYRKYYEDEETH 80 (542)
T ss_dssp -----CCHHHHHHHHHHTTHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHCTTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99751569999999999999984898878848725158989871352178999999874420666776765422565658
Q ss_pred HHHHHHHCC-CCCCCCCCCCHHHHHHH--HHHHHHHHH------HHHHCHHHHHHHHHCCHHHHH---HHHHHCCHHHHH
Q ss_conf 678765338-96103680368861345--589999999------975299989998717723577---544423628999
Q gi|254780836|r 69 LESFVKVAG-YSFYNTSEYSLSTLGST--NTRNNLESY------IASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKI 136 (674)
Q Consensus 69 ~~~~~~~~g-~~F~n~s~~~~~~l~~~--~~~~nl~~y------i~gfS~nv~dI~~~f~f~~~i---~~L~~~~~L~~v 136 (674)
.+.+....+ ..|+..+.++|..+... +...+++.+ |..-.+..++||+.+++.+.. .....+..|..+
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~if~~i~~~~~~~~~~~~~~~~~l~~~ 160 (542)
T 3lkd_A 81 EDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQGFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAV 160 (542)
T ss_dssp HHHHHHHHHHHSCCCCGGGSHHHHHHHHHHTCCCHHHHHHHHHHHHTTCTTTTTTTTTCCTTCGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHH
T ss_conf 99999766505602684124699997343624569999999888763126777788651010233055555565589998
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCH
Q ss_conf 98740245673337611443899999999986227665753681799999999731784011013877640311766540
Q gi|254780836|r 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 (674)
Q Consensus 137 I~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGT 216 (674)
++.+..+++.. .+.+.||++||+||++||+.+++++|||||||+|++|||+|+.... .+..+.+||||||||
T Consensus 161 ~~~~~~~~~~~--~~~D~~G~~yE~li~~~a~~~~~~~Ge~~TP~~Iv~lmv~l~~~~~------~~~~~~~I~DPacGs 232 (542)
T 3lkd_A 161 MKELAVLDVAG--HAGDMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGR------EDKQGFTLYDATMGS 232 (542)
T ss_dssp HHHHHHSCCSS--SSTTHHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTC------TTCTTCEEEETTCTT
T ss_pred HHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC------CCCCCCEEECCCCCC
T ss_conf 60010146553--3077889999999999888626647715898899985786425564------567898683277884
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEE
Q ss_conf 468999999999853100533322550466667889999999898088753345666682347545799986--641899
Q gi|254780836|r 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHY 294 (674)
Q Consensus 217 GGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~--~~kFD~ 294 (674)
||||++|.+++.+. ....+||||+|+.+|+||+|||+|||+... ...|..+|||.+|.+. ..+||+
T Consensus 233 GgfL~~a~~~~~~~-------~~~~~~G~e~~~~~~~la~~nl~l~g~~~~-----~~~i~~~d~l~~~~~~~~~~~fD~ 300 (542)
T 3lkd_A 233 GSLLLNAKRYSRQP-------QTVVYFGQELNTSTYNLARMNMILHGVPIE-----NQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp STTGGGHHHHCSCT-------TTCEEEEEESCHHHHHHHHHHHHHTTCCGG-----GEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CHHHHHHHHHHHHH-------CCEEEEEEECCHHHHHHHHHHHHHHCCCCC-----CCEEECCCCCCCCCCCCCCCCEEE
T ss_conf 55889888877500-------555787442667999999998787246542-----220320565444443232320003
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 98168567653100011123442266665357777477065999999999614665788079997389713477644326
Q gi|254780836|r 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 (674)
Q Consensus 295 vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGE 374 (674)
||+|||||.+|.........+ ..+...+.|+.++++++|+||++++|++ .|||+|||+|+|+||+|++ |
T Consensus 301 Il~NPPfg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~fi~~~~~~L~~---~gG~~~iV~p~g~L~~~~~---e 369 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDP-----RFSPFGKLAPKSKADFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---E 369 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGST-----TTGGGSSCCCTTCCHHHHHHHHHHTBCT---TTCEEEEEEETHHHHCCTH---H
T ss_pred EEECCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCHH---H
T ss_conf 563488677767421112351-----0013577899862599999999998663---7872999954742235627---7
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 89999998849468883176776557886169999946887434883899723677657640466442069899999999
Q gi|254780836|r 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 (674)
Q Consensus 375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~ 454 (674)
+.||+||+++++|+|||+||.++||+|||+||||||+|+|+ +++|+|||||+.|.+ |+++|.|+++||++|++
T Consensus 370 ~~iR~~Lle~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~---~~~V~fida~~~~~~----~~~~~~l~~~~i~~i~~ 442 (542)
T 3lkd_A 370 GTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNRT---NRDVYFIDASKEFDK----GKNQNIMTDAHIEKILN 442 (542)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSSCS---BCCEEEEECTTCCEE----CSSSEECCHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEEECCCC---CCCEEEEECCCCCCC----CCCCCCCCHHHHHHHHH
T ss_conf 78888876358589999799766668898789999968988---881899988776567----87878599999999999
Q ss_pred HHHHCCCCC-CEEEEECCCC
Q ss_conf 997210254-1047444663
Q gi|254780836|r 455 IYVSRENGK-FSRMLDYRTF 473 (674)
Q Consensus 455 ~y~~f~e~e-~ski~~~~~F 473 (674)
+|.++++.+ +|++++.++.
T Consensus 443 ~~~~~~~~~~~s~~v~~~eI 462 (542)
T 3lkd_A 443 AYKSREDIDKFAHLASFEEI 462 (542)
T ss_dssp HHHHTCCBTTTEEEECHHHH
T ss_pred HHHCCCCCCCCEEEEEHHHH
T ss_conf 98631755893799689999