HHsearch results for GI: 254780836 and protein with PDBid: 3ocj_A
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=97.31 E-value=0.00061 Score=43.77 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674)
Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674)
.-||+-.+++.+++- ..+ .|| .+|.|-+||||+.+.. +.. .......++|.|+++...++|+.
T Consensus 99 l~~r~~~~~~~~~~~----~~l--~~g--~~vLDvGcG~G~~~~~-------l~~--~~~p~~~v~gvD~S~~~l~~A~~ 161 (305)
T 3ocj_A 99 LATRERHGHFRRALQ----RHL--RPG--CVVASVPCGWMSELLA-------LDY--SACPGVQLVGIDYDPEALDGATR 161 (305)
T ss_dssp HHHHHHHHHHHHHHH----HHC--CTT--CEEEETTCTTCHHHHT-------SCC--TTCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----HCC--CCC--CEEEEECCCCHHHHHH-------HHH--HHCCCCEEEEEECCHHHHHHHHH
T ss_conf 377888999999999----409--995--9999944747699999-------999--71899589999798889999975
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 989808875334566668234754579998664189998168567
Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674)
Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674)
+.--+|.... -....+|...-+ ...+||.|++|+++-
T Consensus 162 ~~~~~~l~~~------~~~~~~d~~~l~--~~~~~d~iv~~~~~~ 198 (305)
T 3ocj_A 162 LAAGHALAGQ------ITLHRQDAWKLD--TREGYDLLTSNGLNI 198 (305)
T ss_dssp HHTTSTTGGG------EEEEECCGGGCC--CCSCEEEEECCSSGG
T ss_pred HHHHHCCCCC------CCCCCCCHHHHC--CCCCCCEEEEECCCC
T ss_conf 3022012322------233200088742--466401799813421