HHsearch results for GI: 254780836 and protein with PDBid: 3ofk_A
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=95.02 E-value=0.046 Score=31.54 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=59.1
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682--3475457
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLS 283 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~ 283 (674)
..+|.|-.||||.++.. +. +. ...+.|.|+++...+.|+... .+. .+| ..+|-+.
T Consensus 52 ~~~vLDvGcG~G~~~~~----la---~~-----~~~v~gvD~s~~~l~~a~~~~--~~~---------~~i~~~~~d~~~ 108 (216)
T 3ofk_A 52 VSNGLEIGCAAGAFTEK----LA---PH-----CKRLTVIDVMPRAIGRACQRT--KRW---------SHISWAATDILQ 108 (216)
T ss_dssp EEEEEEECCTTSHHHHH----HG---GG-----EEEEEEEESCHHHHHHHHHHT--TTC---------SSEEEEECCTTT
T ss_pred CCEEEEEECCCCHHHHH----HH---HH-----CCEEEEEECCHHHHHHHHHHH--CCC---------CEEECCCCCHHH
T ss_conf 99099963889899999----99---70-----998999969989999999861--546---------223101020223
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 99986641899981685676531000111234422666653577774770659-999999996146657880799973
Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVL 360 (674)
Q Consensus 284 ~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aIV~ 360 (674)
. .+..+||+|+++--+- | +|.. .++ .++..+...|+| ||++.|..
T Consensus 109 ~--~~~~~fD~V~~~~vl~--~----------------------~~~~--~~~~~~l~~~~~~L~p----gG~l~i~~ 154 (216)
T 3ofk_A 109 F--STAELFDLIVVAEVLY--Y----------------------LEDM--TQMRTAIDNMVKMLAP----GGHLVFGS 154 (216)
T ss_dssp C--CCSCCEEEEEEESCGG--G----------------------SSSH--HHHHHHHHHHHHTEEE----EEEEEEEE
T ss_pred H--CCCCCCCEEEECCCHH--H----------------------CCCH--HHHHHHHHHHHHHCCC----CCEEEEEE
T ss_conf 2--3578714899845577--5----------------------8998--9999999999987798----83899996