Query gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 674 No_of_seqs 263 out of 1074 Neff 5.3 Searched_HMMs 23785 Date Tue May 31 21:25:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780836.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3khk_A Type I restriction-modi 100.0 0 0 703.3 33.8 461 4-494 6-527 (544) 2 3lkd_A Type I restriction-modi 100.0 0 0 698.8 26.1 435 1-473 1-462 (542) 3 2ar0_A M.ecoki, type I restric 100.0 0 0 630.7 22.5 390 4-463 1-414 (541) 4 2okc_A Type I restriction enzy 100.0 0 0 597.2 26.2 406 1-482 2-417 (445) 5 2f8l_A Hypothetical protein LM 100.0 0 0 342.8 23.9 287 102-433 39-326 (344) 6 2ih2_A Modification methylase 100.0 2.4E-38 1E-42 268.3 9.8 208 161-415 5-213 (421) 7 3evz_A Methyltransferase; NYSG 99.6 1.1E-13 4.7E-18 107.4 14.4 101 175-303 35-135 (230) 8 1wy7_A Hypothetical protein PH 99.4 7.7E-13 3.2E-17 101.9 7.0 103 172-304 23-125 (207) 9 3ldu_A Putative methylase; str 99.3 1.7E-11 7.1E-16 93.1 8.1 91 206-304 196-314 (385) 10 1ne2_A Hypothetical protein TA 99.2 8.5E-10 3.6E-14 82.0 13.2 163 174-412 27-197 (200) 11 2b3t_A Protein methyltransfera 99.2 3E-10 1.3E-14 85.0 10.4 166 177-386 88-255 (276) 12 3k0b_A Predicted N6-adenine-sp 99.1 1.6E-10 6.6E-15 86.8 8.4 91 206-304 202-320 (393) 13 2ozv_A Hypothetical protein AT 99.1 1.7E-10 7.2E-15 86.5 6.4 131 203-361 34-171 (260) 14 1dus_A MJ0882; hypothetical pr 98.9 1E-08 4.2E-13 75.0 10.1 129 173-362 28-159 (194) 15 2pjd_A Ribosomal RNA small sub 98.8 2.7E-08 1.1E-12 72.2 10.2 123 182-362 183-305 (343) 16 3lpm_A Putative methyltransfer 98.8 1.3E-08 5.5E-13 74.3 7.2 143 206-386 50-193 (259) 17 3dmg_A Probable ribosomal RNA 98.7 1.1E-07 4.6E-12 68.2 10.6 129 182-362 214-342 (381) 18 1nv8_A HEMK protein; class I a 98.7 2E-08 8.3E-13 73.1 6.7 147 177-360 101-249 (284) 19 3gdh_A Trimethylguanosine synt 98.7 9.6E-09 4E-13 75.1 4.2 96 179-303 61-156 (241) 20 2qm3_A Predicted methyltransfe 98.6 4.1E-07 1.7E-11 64.5 10.8 101 177-303 152-253 (373) 21 2as0_A Hypothetical protein PH 98.5 2.5E-07 1.1E-11 65.9 7.9 104 171-303 195-301 (396) 22 1ws6_A Methyltransferase; stru 98.5 7.7E-08 3.3E-12 69.2 4.5 100 177-304 21-123 (171) 23 3a27_A TYW2, uncharacterized p 98.5 3.7E-07 1.6E-11 64.7 7.8 97 175-302 99-197 (272) 24 3grz_A L11 mtase, ribosomal pr 98.5 7.9E-07 3.3E-11 62.6 9.2 96 174-302 41-136 (205) 25 2esr_A Methyltransferase; stru 98.5 8.6E-08 3.6E-12 68.9 3.7 103 175-303 10-112 (177) 26 2h00_A Methyltransferase 10 do 98.4 6.7E-07 2.8E-11 63.1 8.1 82 205-302 65-151 (254) 27 2yx1_A Hypothetical protein MJ 98.4 4.8E-07 2E-11 64.1 6.2 93 175-302 175-269 (336) 28 2frn_A Hypothetical protein PH 98.4 2.1E-06 8.8E-11 59.9 9.4 96 176-302 106-203 (278) 29 3c0k_A UPF0064 protein YCCW; P 98.3 4.9E-06 2.1E-10 57.5 10.2 104 170-302 198-304 (396) 30 3lec_A NADB-rossmann superfami 98.3 3E-05 1.3E-09 52.3 12.7 148 177-399 7-156 (230) 31 2fpo_A Methylase YHHF; structu 98.2 1.2E-06 5.2E-11 61.4 5.6 99 178-303 36-134 (202) 32 1l3i_A Precorrin-6Y methyltran 98.2 9.1E-06 3.8E-10 55.7 9.9 141 174-386 10-152 (192) 33 3e05_A Precorrin-6Y C5,15-meth 98.2 5.2E-05 2.2E-09 50.8 13.3 148 173-391 18-165 (204) 34 3eey_A Putative rRNA methylase 98.2 8.2E-05 3.4E-09 49.5 14.3 116 206-360 23-139 (197) 35 1wxx_A TT1595, hypothetical pr 98.2 5.2E-06 2.2E-10 57.3 8.1 100 171-303 189-291 (382) 36 3hm2_A Precorrin-6Y C5,15-meth 98.2 6.9E-05 2.9E-09 49.9 13.8 170 171-412 2-177 (178) 37 2fhp_A Methylase, putative; al 98.2 1.6E-06 6.6E-11 60.7 5.2 101 177-303 25-128 (187) 38 3mti_A RRNA methylase; SAM-dep 98.2 5.5E-05 2.3E-09 50.6 13.0 159 205-413 22-184 (185) 39 2igt_A SAM dependent methyltra 98.2 4.4E-06 1.8E-10 57.8 7.1 107 170-302 127-237 (332) 40 2b78_A Hypothetical protein SM 98.1 1.6E-05 6.7E-10 54.1 9.5 104 170-301 189-295 (385) 41 3mb5_A SAM-dependent methyltra 98.1 4.8E-05 2E-09 51.0 10.9 122 175-361 74-195 (255) 42 3kr9_A SAM-dependent methyltra 98.0 6.6E-05 2.8E-09 50.1 10.7 120 207-387 17-136 (225) 43 3g5t_A Trans-aconitate 3-methy 98.0 8.5E-05 3.6E-09 49.4 11.1 126 176-360 19-149 (299) 44 2nxc_A L11 mtase, ribosomal pr 98.0 7.5E-06 3.1E-10 56.2 5.6 136 174-386 101-236 (254) 45 2yvl_A TRMI protein, hypotheti 98.0 9.7E-05 4.1E-09 49.0 11.2 123 172-361 69-191 (248) 46 1o54_A SAM-dependent O-methylt 98.0 5.9E-05 2.5E-09 50.4 10.0 143 173-388 91-233 (277) 47 1o9g_A RRNA methyltransferase; 98.0 1.4E-05 5.8E-10 54.5 6.3 72 180-262 29-100 (250) 48 1xxl_A YCGJ protein; structura 97.9 0.00012 5E-09 48.4 9.8 119 180-360 6-124 (239) 49 1yb2_A Hypothetical protein TA 97.9 9.3E-05 3.9E-09 49.1 9.2 122 175-361 91-212 (275) 50 2pwy_A TRNA (adenine-N(1)-)-me 97.8 0.00028 1.2E-08 46.0 10.6 144 173-388 75-218 (258) 51 1ri5_A MRNA capping enzyme; me 97.7 0.00018 7.5E-09 47.3 8.2 110 207-361 66-175 (298) 52 1i9g_A Hypothetical protein RV 97.7 0.00086 3.6E-08 42.8 11.4 125 172-361 77-204 (280) 53 1vl5_A Unknown conserved prote 97.6 0.00032 1.4E-08 45.6 8.4 122 176-360 19-140 (260) 54 3dlc_A Putative S-adenosyl-L-m 97.6 0.00098 4.1E-08 42.4 10.7 103 208-360 46-148 (219) 55 3dh0_A SAM dependent methyltra 97.5 0.00026 1.1E-08 46.2 7.2 142 205-395 37-183 (219) 56 3bt7_A TRNA (uracil-5-)-methyl 97.5 0.00092 3.9E-08 42.6 10.1 163 174-412 188-368 (369) 57 3hnr_A Probable methyltransfer 97.5 0.00049 2E-08 44.4 8.4 99 207-360 47-145 (220) 58 2yxd_A Probable cobalt-precorr 97.5 8.1E-05 3.4E-09 49.5 4.1 93 175-298 15-107 (183) 59 3gnl_A Uncharacterized protein 97.5 0.0015 6.5E-08 41.1 10.5 119 207-387 23-142 (244) 60 2ift_A Putative methylase HI07 97.5 0.0002 8.5E-09 46.9 5.8 81 208-304 56-138 (201) 61 2b25_A Hypothetical protein; s 97.4 0.002 8.3E-08 40.4 10.6 132 173-361 84-220 (336) 62 1dl5_A Protein-L-isoaspartate 97.4 0.00044 1.8E-08 44.7 7.1 98 175-299 55-152 (317) 63 1ve3_A Hypothetical protein PH 97.4 0.0024 1E-07 39.9 10.8 103 207-360 40-142 (227) 64 2yqz_A Hypothetical protein TT 97.4 0.0009 3.8E-08 42.7 8.4 102 206-360 40-141 (263) 65 3gu3_A Methyltransferase; alph 97.4 0.00099 4.2E-08 42.4 8.5 126 177-362 3-128 (284) 66 1nkv_A Hypothetical protein YJ 97.3 0.0019 8.1E-08 40.5 9.7 94 178-301 20-113 (256) 67 1im8_A YECO; methyltransferase 97.3 0.0047 2E-07 38.0 11.6 141 154-359 25-165 (244) 68 3ocj_A Putative exported prote 97.3 0.00061 2.6E-08 43.8 6.9 100 178-302 99-198 (305) 69 2b9e_A NOL1/NOP2/SUN domain fa 97.3 0.0043 1.8E-07 38.2 11.0 103 175-303 82-186 (309) 70 3fzg_A 16S rRNA methylase; met 97.3 0.0014 6E-08 41.4 8.4 142 206-400 50-194 (200) 71 3bus_A REBM, methyltransferase 97.3 0.0016 6.7E-08 41.1 8.5 105 205-359 61-165 (273) 72 3bgv_A MRNA CAP guanine-N7 met 97.2 0.0026 1.1E-07 39.6 9.2 85 205-300 34-123 (313) 73 3lcc_A Putative methyl chlorid 97.2 0.012 5.1E-07 35.3 12.6 127 207-387 68-200 (235) 74 2o57_A Putative sarcosine dime 97.2 0.0023 9.6E-08 40.0 8.5 105 205-359 82-186 (297) 75 3lcv_B Sisomicin-gentamicin re 97.2 0.0023 9.9E-08 40.0 8.5 76 206-301 133-208 (281) 76 1uwv_A 23S rRNA (uracil-5-)-me 97.1 0.0016 6.5E-08 41.1 7.5 168 174-414 260-433 (433) 77 3e8s_A Putative SAM dependent 97.1 0.004 1.7E-07 38.5 9.3 101 207-362 54-154 (227) 78 3kkz_A Uncharacterized protein 97.1 0.0015 6.2E-08 41.3 6.8 94 181-301 31-124 (267) 79 3ll7_A Putative methyltransfer 97.1 0.00016 6.9E-09 47.5 1.8 79 207-302 95-174 (410) 80 2p35_A Trans-aconitate 2-methy 97.0 0.0031 1.3E-07 39.2 8.0 116 180-362 19-134 (259) 81 2p8j_A S-adenosylmethionine-de 96.9 0.0028 1.2E-07 39.5 7.3 104 206-359 24-127 (209) 82 3f4k_A Putative methyltransfer 96.9 0.0039 1.6E-07 38.5 7.9 121 181-361 31-151 (257) 83 1wzn_A SAM-dependent methyltra 96.9 0.0049 2E-07 37.9 8.4 106 203-360 39-145 (252) 84 1pjz_A Thiopurine S-methyltran 96.9 0.0048 2E-07 38.0 8.3 132 176-360 4-140 (203) 85 3dtn_A Putative methyltransfer 96.9 0.0098 4.1E-07 35.9 9.9 133 155-359 13-147 (234) 86 3m33_A Uncharacterized protein 96.9 0.015 6.3E-07 34.7 10.8 146 157-386 9-159 (226) 87 1vlm_A SAM-dependent methyltra 96.9 0.0033 1.4E-07 39.0 7.5 128 151-361 9-140 (219) 88 3bkx_A SAM-dependent methyltra 96.9 0.0072 3E-07 36.8 9.1 80 205-299 43-130 (275) 89 3m70_A Tellurite resistance pr 96.9 0.008 3.4E-07 36.5 9.2 102 208-361 123-224 (286) 90 2pxx_A Uncharacterized protein 96.9 0.025 1E-06 33.3 11.7 74 207-301 44-117 (215) 91 2dul_A N(2),N(2)-dimethylguano 96.9 0.017 6.9E-07 34.4 10.7 109 172-304 22-143 (378) 92 3m6w_A RRNA methylase; rRNA me 96.9 0.0067 2.8E-07 37.0 8.6 166 175-387 81-251 (464) 93 1g8a_A Fibrillarin-like PRE-rR 96.8 0.026 1.1E-06 33.2 12.2 169 178-411 51-225 (227) 94 3mgg_A Methyltransferase; NYSG 96.8 0.013 5.7E-07 35.0 10.0 105 206-360 38-142 (276) 95 1eg2_A Modification methylase 96.8 0.0026 1.1E-07 39.6 6.1 28 276-303 42-70 (319) 96 1zq9_A Probable dimethyladenos 96.8 0.0024 1E-07 39.8 5.8 104 170-304 2-106 (285) 97 3ajd_A Putative methyltransfer 96.8 0.026 1.1E-06 33.1 11.1 177 175-399 63-244 (274) 98 1xva_A Glycine N-methyltransfe 96.8 0.0013 5.6E-08 41.5 4.4 127 181-358 42-172 (292) 99 1y8c_A S-adenosylmethionine-de 96.7 0.0046 1.9E-07 38.0 7.1 121 181-360 21-142 (246) 100 1g60_A Adenine-specific methyl 96.7 0.0017 7.1E-08 40.9 4.9 111 275-414 6-126 (260) 101 2fk8_A Methoxy mycolic acid sy 96.7 0.028 1.2E-06 32.9 10.9 104 203-358 88-192 (318) 102 3ege_A Putative methyltransfer 96.7 0.002 8.4E-08 40.4 5.0 115 178-361 18-132 (261) 103 3l8d_A Methyltransferase; stru 96.7 0.005 2.1E-07 37.8 6.9 100 207-361 55-154 (242) 104 2gb4_A Thiopurine S-methyltran 96.7 0.035 1.5E-06 32.3 14.1 208 159-413 33-252 (252) 105 1qam_A ERMC' methyltransferase 96.6 0.004 1.7E-07 38.4 6.2 172 170-414 4-180 (244) 106 2h1r_A Dimethyladenosine trans 96.6 0.0062 2.6E-07 37.2 7.1 99 174-304 20-119 (299) 107 1sqg_A SUN protein, FMU protei 96.6 0.0091 3.8E-07 36.1 7.9 166 177-388 227-397 (429) 108 3bxo_A N,N-dimethyltransferase 96.6 0.0023 9.5E-08 40.1 4.7 97 207-358 42-139 (239) 109 1nt2_A Fibrillarin-like PRE-rR 96.6 0.023 9.5E-07 33.5 9.8 156 178-395 36-197 (210) 110 2frx_A Hypothetical protein YE 96.6 0.0084 3.5E-07 36.3 7.6 173 174-389 94-271 (479) 111 2avn_A Ubiquinone/menaquinone 96.5 0.0043 1.8E-07 38.2 5.8 97 207-361 56-153 (260) 112 1ixk_A Methyltransferase; open 96.5 0.011 4.8E-07 35.5 7.8 164 175-387 98-267 (315) 113 1boo_A Protein (N-4 cytosine-s 96.5 0.0034 1.4E-07 38.9 5.1 30 275-304 16-46 (323) 114 2i6g_A Putative methyltransfer 96.5 0.023 9.5E-07 33.5 9.1 117 179-360 19-135 (199) 115 2zig_A TTHA0409, putative modi 96.5 0.0055 2.3E-07 37.5 5.9 30 275-304 23-53 (297) 116 3fpf_A Mtnas, putative unchara 96.5 0.022 9.2E-07 33.6 9.0 148 181-401 108-257 (298) 117 2yxl_A PH0851 protein, 450AA l 96.4 0.049 2.1E-06 31.4 11.9 167 177-388 240-412 (450) 118 2aot_A HMT, histamine N-methyl 96.4 0.023 9.7E-07 33.5 9.0 149 159-361 15-173 (292) 119 1nw3_A Histone methyltransfera 96.4 0.0058 2.4E-07 37.4 5.7 94 179-298 139-241 (416) 120 3hem_A Cyclopropane-fatty-acyl 96.4 0.053 2.2E-06 31.1 12.9 78 203-301 70-147 (302) 121 2ipx_A RRNA 2'-O-methyltransfe 96.3 0.055 2.3E-06 31.0 10.7 123 179-360 56-182 (233) 122 3ccf_A Cyclopropane-fatty-acyl 96.3 0.0082 3.4E-07 36.4 6.2 102 203-362 55-156 (279) 123 3frh_A 16S rRNA methylase; met 96.2 0.008 3.4E-07 36.5 5.8 70 207-299 107-176 (253) 124 3cgg_A SAM-dependent methyltra 96.2 0.027 1.1E-06 33.1 8.4 99 207-360 48-147 (195) 125 2gs9_A Hypothetical protein TT 96.2 0.011 4.6E-07 35.6 6.3 96 206-360 37-132 (211) 126 3e23_A Uncharacterized protein 96.2 0.066 2.8E-06 30.5 11.3 123 207-386 45-173 (211) 127 3i9f_A Putative type 11 methyl 96.2 0.0085 3.6E-07 36.3 5.6 94 207-360 19-112 (170) 128 3gru_A Dimethyladenosine trans 96.1 0.014 5.7E-07 35.0 6.5 103 170-304 24-127 (295) 129 3g5l_A Putative S-adenosylmeth 96.1 0.0045 1.9E-07 38.1 4.0 104 205-362 44-147 (253) 130 2jjq_A Uncharacterized RNA met 96.1 0.017 7.1E-07 34.4 6.8 95 174-300 267-362 (425) 131 3ftd_A Dimethyladenosine trans 96.0 0.016 6.7E-07 34.5 6.4 173 171-414 6-184 (249) 132 1jg1_A PIMT;, protein-L-isoasp 96.0 0.049 2E-06 31.4 8.7 99 174-301 70-168 (235) 133 1yzh_A TRNA (guanine-N(7)-)-me 95.9 0.028 1.2E-06 32.9 7.4 118 208-366 44-162 (214) 134 2r6z_A UPF0341 protein in RSP 95.9 0.00081 3.4E-08 43.0 -0.5 85 206-303 84-173 (258) 135 3fut_A Dimethyladenosine trans 95.9 0.015 6.2E-07 34.8 5.8 182 161-415 12-202 (271) 136 2i62_A Nicotinamide N-methyltr 95.9 0.084 3.5E-06 29.8 9.7 174 202-416 53-262 (265) 137 3bkw_A MLL3908 protein, S-aden 95.8 0.0091 3.8E-07 36.1 4.5 104 206-366 44-149 (243) 138 1yub_A Ermam, rRNA methyltrans 95.8 0.011 4.6E-07 35.6 4.9 103 170-304 3-106 (245) 139 3id6_C Fibrillarin-like rRNA/T 95.8 0.097 4.1E-06 29.4 14.6 162 178-395 54-218 (232) 140 1u2z_A Histone-lysine N-methyl 95.7 0.032 1.3E-06 32.6 7.0 47 204-260 241-287 (433) 141 3m4x_A NOL1/NOP2/SUN family pr 95.7 0.081 3.4E-06 29.9 9.0 164 174-385 84-253 (456) 142 2ex4_A Adrenal gland protein A 95.6 0.11 4.7E-06 29.0 14.2 151 205-410 79-240 (241) 143 1xtp_A LMAJ004091AAA; SGPP, st 95.5 0.12 5.1E-06 28.8 11.5 142 206-399 94-247 (254) 144 1vbf_A 231AA long hypothetical 95.4 0.044 1.8E-06 31.7 6.7 93 175-299 50-142 (231) 145 1fbn_A MJ fibrillarin homologu 95.4 0.092 3.9E-06 29.5 8.3 137 204-395 73-215 (230) 146 1zx0_A Guanidinoacetate N-meth 95.2 0.026 1.1E-06 33.1 5.1 121 181-358 47-168 (236) 147 1p91_A Ribosomal RNA large sub 95.2 0.041 1.7E-06 31.9 6.1 88 181-298 68-155 (269) 148 3jwg_A HEN1, methyltransferase 95.1 0.023 9.5E-07 33.5 4.4 83 206-301 30-112 (219) 149 3ofk_A Nodulation protein S; N 95.0 0.046 1.9E-06 31.5 5.9 100 206-360 52-154 (216) 150 2kw5_A SLR1183 protein; struct 94.8 0.2 8.6E-06 27.3 13.6 155 208-417 32-197 (202) 151 3d2l_A SAM-dependent methyltra 94.8 0.044 1.8E-06 31.7 5.2 102 207-360 35-137 (243) 152 3cc8_A Putative methyltransfer 94.8 0.046 1.9E-06 31.5 5.3 99 206-362 33-132 (230) 153 3jwh_A HEN1; methyltransferase 94.7 0.028 1.2E-06 32.9 4.1 83 206-301 30-112 (217) 154 3h2b_A SAM-dependent methyltra 94.7 0.023 9.8E-07 33.4 3.6 139 180-387 30-175 (203) 155 3ou2_A SAM-dependent methyltra 94.6 0.095 4E-06 29.5 6.7 96 207-360 48-146 (218) 156 2vdv_E TRNA (guanine-N(7)-)-me 94.6 0.15 6.3E-06 28.2 7.6 121 207-362 51-175 (246) 157 2r3s_A Uncharacterized protein 94.5 0.24 9.9E-06 26.9 15.0 143 206-397 166-327 (335) 158 2a14_A Indolethylamine N-methy 94.5 0.24 1E-05 26.8 13.6 46 205-261 55-100 (263) 159 2vdw_A Vaccinia virus capping 94.4 0.038 1.6E-06 32.0 4.2 117 206-362 49-172 (302) 160 1i1n_A Protein-L-isoaspartate 94.4 0.25 1.1E-05 26.7 8.5 106 175-301 55-161 (226) 161 1r18_A Protein-L-isoaspartate( 94.3 0.17 6.9E-06 27.9 7.3 109 174-300 61-172 (227) 162 3iv6_A Putative Zn-dependent a 94.2 0.031 1.3E-06 32.7 3.4 74 206-301 46-120 (261) 163 3dxy_A TRNA (guanine-N(7)-)-me 94.1 0.16 6.9E-06 27.9 6.9 115 208-365 37-155 (218) 164 2p7i_A Hypothetical protein; p 93.8 0.047 2E-06 31.5 3.7 66 208-298 45-110 (250) 165 3g2m_A PCZA361.24; SAM-depende 93.8 0.098 4.1E-06 29.4 5.3 106 208-361 85-191 (299) 166 1or8_A Protein arginine N-meth 93.5 0.18 7.4E-06 27.7 6.2 74 207-299 59-132 (340) 167 1g6q_1 HnRNP arginine N-methyl 93.1 0.22 9.4E-06 27.0 6.2 78 207-303 40-117 (328) 168 3mcz_A O-methyltransferase; ad 93.0 0.26 1.1E-05 26.6 6.4 80 205-301 179-258 (352) 169 2fca_A TRNA (guanine-N(7)-)-me 92.8 0.47 2E-05 25.0 10.4 136 208-392 41-177 (213) 170 2yxe_A Protein-L-isoaspartate 92.6 0.5 2.1E-05 24.8 8.8 99 175-301 57-156 (215) 171 2fyt_A Protein arginine N-meth 92.6 0.33 1.4E-05 25.9 6.5 76 207-303 66-143 (340) 172 3dli_A Methyltransferase; PSI- 92.5 0.03 1.3E-06 32.7 1.1 97 207-361 43-141 (240) 173 3dp7_A SAM-dependent methyltra 92.5 0.5 2.1E-05 24.7 12.6 155 207-414 181-356 (363) 174 1x19_A CRTF-related protein; m 92.1 0.56 2.4E-05 24.4 9.8 73 206-298 191-263 (359) 175 2oyr_A UPF0341 protein YHIQ; a 91.7 0.051 2.2E-06 31.2 1.5 89 203-303 86-176 (258) 176 3g07_A 7SK snRNA methylphospha 90.7 0.16 6.6E-06 28.1 3.2 45 207-261 48-92 (292) 177 3b3f_A Histone-arginine methyl 90.5 0.65 2.7E-05 24.0 6.2 73 207-299 48-120 (341) 178 3p2e_A 16S rRNA methylase; met 89.9 0.33 1.4E-05 25.9 4.3 47 206-262 25-71 (225) 179 3b3j_A Histone-arginine methyl 89.8 0.75 3.2E-05 23.6 6.0 72 207-300 160-233 (480) 180 3ckk_A TRNA (guanine-N(7)-)-me 89.0 1 4.2E-05 22.8 6.2 136 208-390 49-190 (235) 181 1qzz_A RDMB, aclacinomycin-10- 88.6 1.1 4.7E-05 22.5 9.5 141 206-396 183-342 (374) 182 1kpg_A CFA synthase;, cyclopro 88.5 1.1 4.8E-05 22.4 12.5 105 203-358 62-166 (287) 183 2ip2_A Probable phenazine-spec 87.5 1.3 5.5E-05 22.0 10.4 140 206-395 168-324 (334) 184 2pbf_A Protein-L-isoaspartate 87.4 1.3 5.6E-05 22.0 7.1 109 175-299 58-170 (227) 185 3ggd_A SAM-dependent methyltra 87.3 1.3 5.6E-05 22.0 8.1 42 206-259 57-98 (245) 186 3gjy_A Spermidine synthase; AP 83.2 2.1 8.8E-05 20.7 6.8 108 206-358 90-198 (317) 187 1zkd_A DUF185; X-RAY, NESG, RP 82.0 2.3 9.8E-05 20.4 6.0 111 173-301 47-159 (387) 188 3i53_A O-methyltransferase; CO 79.1 2.9 0.00012 19.8 8.1 132 206-387 170-314 (332) 189 2pt6_A Spermidine synthase; tr 77.0 3.3 0.00014 19.4 5.3 146 208-406 119-264 (321) 190 2b2c_A Spermidine synthase; be 76.7 3.3 0.00014 19.4 4.6 82 207-301 110-191 (314) 191 3adn_A Spermidine synthase; am 75.2 3.7 0.00016 19.1 5.8 119 207-367 85-204 (294) 192 1tw3_A COMT, carminomycin 4-O- 74.6 3.8 0.00016 19.0 13.8 152 206-410 184-353 (360) 193 1qyr_A KSGA, high level kasuga 74.2 3.9 0.00016 18.9 5.2 96 177-304 3-103 (252) 194 1inl_A Spermidine synthase; be 74.2 3.5 0.00015 19.3 4.2 119 208-367 93-211 (296) 195 3c3p_A Methyltransferase; NP_9 73.9 2.7 0.00011 20.0 3.5 92 181-298 42-133 (210) 196 3dr5_A Putative O-methyltransf 73.9 4 0.00017 18.9 13.3 150 206-416 57-216 (221) 197 2yui_A Anamorsin; cytokine-ind 72.3 4.3 0.00018 18.6 7.6 84 275-390 50-135 (182) 198 3ndi_A Methyltransferase; S-ad 69.1 5.1 0.00021 18.2 4.7 101 206-361 108-209 (416) 199 2gpy_A O-methyltransferase; st 65.8 5.9 0.00025 17.8 5.8 93 180-298 39-133 (233) 200 2i7c_A Spermidine synthase; tr 64.3 6.3 0.00026 17.6 6.9 145 208-406 81-226 (283) 201 3gmi_A UPF0348 protein MJ0951; 63.0 6.6 0.00028 17.4 4.6 37 212-254 124-160 (357) 202 3bwc_A Spermidine synthase; SA 61.7 7 0.00029 17.3 4.5 131 208-384 98-230 (304) 203 1g55_A DNA cytosine methyltran 61.3 4.3 0.00018 18.7 2.5 74 207-301 3-78 (343) 204 2c7p_A Modification methylase 59.5 7.6 0.00032 17.0 5.9 77 200-301 5-81 (327) 205 3duw_A OMT, O-methyltransferas 57.7 8.2 0.00034 16.8 8.0 145 207-404 60-217 (223) 206 1uir_A Polyamine aminopropyltr 55.3 8.9 0.00037 16.6 4.7 107 207-349 79-188 (314) 207 2b0t_A NADP isocitrate dehydro 54.9 9.1 0.00038 16.5 3.6 24 361-384 569-593 (738) 208 1itw_A Isocitrate dehydrogenas 52.4 9.9 0.00042 16.3 3.6 27 359-385 571-598 (741) 209 2zfu_A Nucleomethylin, cerebra 52.3 10 0.00042 16.3 12.8 116 206-398 68-183 (215) 210 3d1k_B Hemoglobin subunit beta 51.7 10 0.00043 16.2 4.5 55 121-182 72-126 (146) 211 2g72_A Phenylethanolamine N-me 50.7 11 0.00044 16.1 6.4 144 203-386 69-248 (289) 212 3dmp_A Uracil phosphoribosyltr 50.7 6.7 0.00028 17.4 2.0 28 207-234 132-159 (217) 213 3ooo_A Proline dipeptidase; st 46.9 12 0.00051 15.7 3.1 51 375-431 6-63 (132) 214 2q3b_A Cysteine synthase A; py 45.5 10 0.00042 16.3 2.3 32 211-248 177-208 (313) 215 1iy9_A Spermidine synthase; ro 43.9 13 0.00056 15.4 7.7 144 208-406 78-223 (275) 216 1dct_A Protein (modification m 42.1 14 0.0006 15.3 4.9 68 208-301 2-71 (324) 217 3htx_A HEN1; HEN1, small RNA m 40.4 15 0.00064 15.1 6.5 19 582-600 789-807 (950) 218 1xtt_A Probable uracil phospho 39.4 10 0.00044 16.2 1.6 25 208-232 137-161 (216) 219 3i7m_A XAA-Pro dipeptidase; st 38.1 16 0.00069 14.9 2.8 57 375-436 7-69 (140) 220 3o5v_A X-Pro dipeptidase; crea 37.3 17 0.00071 14.8 3.2 50 375-430 6-62 (132) 221 2dpm_A M.dpnii 1, protein (ade 37.1 17 0.0007 14.8 2.3 11 292-302 188-198 (284) 222 2o07_A Spermidine synthase; st 36.9 17 0.00072 14.7 4.8 130 208-383 98-228 (304) 223 3gwz_A MMCR; methyltransferase 36.0 18 0.00074 14.7 10.7 80 206-306 203-282 (369) 224 3opn_A Putative hemolysin; str 35.7 18 0.00075 14.6 3.4 98 176-302 15-114 (232) 225 1o5o_A Uracil phosphoribosyltr 35.6 17 0.00071 14.8 2.2 26 207-232 139-164 (221) 226 1i5e_A Uracil phosphoribosyltr 35.3 17 0.00072 14.7 2.2 26 207-232 127-152 (209) 227 2g1p_A DNA adenine methylase; 34.2 17 0.00072 14.7 2.0 10 293-302 176-185 (278) 228 2qfm_A Spermine synthase; sper 33.7 14 0.0006 15.3 1.6 83 207-300 190-276 (364) 229 3c2q_A Uncharacterized conserv 33.7 19 0.00081 14.4 2.6 50 351-405 133-189 (345) 230 2cy7_A Cysteine protease APG4B 33.3 19 0.00082 14.4 4.6 50 132-191 110-159 (396) 231 1v9s_A Uracil phosphoribosyltr 32.7 20 0.00084 14.3 2.2 26 207-232 126-151 (208) 232 1s96_A Guanylate kinase, GMP k 32.6 20 0.00084 14.3 2.9 15 370-384 25-39 (219) 233 1u0i_A IAAL-E3; coiled-coil, d 31.8 18 0.00075 14.6 1.8 16 657-672 2-17 (26) 234 3c3y_A Pfomt, O-methyltransfer 31.3 21 0.00088 14.2 12.3 156 175-394 50-225 (237) 235 1z7w_A Cysteine synthase; tran 30.5 22 0.00091 14.1 2.3 29 213-247 179-207 (322) 236 3ktb_A Arsenical resistance op 30.5 13 0.00053 15.6 0.8 11 207-217 7-19 (106) 237 1bd3_D Uprtase, uracil phospho 30.3 22 0.00092 14.1 2.9 29 207-235 159-187 (243) 238 3ejx_A DAP epimerase, diaminop 30.0 10 0.00043 16.2 0.3 21 367-387 251-271 (317) 239 2ehj_A Uracil phosphoribosyltr 30.0 19 0.00078 14.5 1.6 27 207-233 126-152 (208) 240 2e55_A Uracil phosphoribosyltr 29.3 20 0.00085 14.3 1.7 25 207-231 124-148 (208) 241 3e9c_A ZGC:56074; histidine ph 27.4 24 0.001 13.7 3.4 68 352-432 174-251 (265) 242 1tdj_A Biosynthetic threonine 27.4 24 0.001 13.7 2.3 35 207-248 181-215 (514) 243 1ve1_A O-acetylserine sulfhydr 25.8 26 0.0011 13.5 6.9 76 158-248 123-202 (304) 244 3mbr_X Glutamine cyclotransfer 25.1 6.8 0.00029 17.3 -1.3 65 361-430 29-95 (243) 245 1o58_A O-acetylserine sulfhydr 24.4 28 0.0012 13.4 2.6 32 212-248 175-206 (303) 246 3il0_A Aminopeptidase P; XAA-P 23.6 29 0.0012 13.3 4.5 52 375-433 9-63 (131) 247 3he4_A Synzip6; heterodimeric 22.6 30 0.0013 13.2 2.1 20 638-657 10-29 (56) 248 3dwg_A Cysteine synthase B; su 22.2 31 0.0013 13.1 2.3 29 212-246 183-211 (325) 249 3bu2_A Putative tRNA-binding p 22.0 31 0.0013 13.1 4.5 60 396-458 2-78 (199) 250 1yf3_A DNA adenine methylase; 22.0 18 0.00076 14.6 0.4 11 292-302 165-175 (259) 251 3lbf_A Protein-L-isoaspartate 21.7 31 0.0013 13.0 9.0 99 173-301 55-153 (210) 252 2aa1_B Hemoglobin beta-C chain 20.7 33 0.0014 12.9 4.1 28 150-181 98-125 (146) No 1 >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} Probab=100.00 E-value=0 Score=703.25 Aligned_cols=461 Identities=20% Similarity=0.343 Sum_probs=342.3 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC---------HHHH-- Q ss_conf 10178889999999998740688834308723054899989674123399999999720246889---------6787-- Q gi|254780836|r 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID---------LESF-- 72 (674) Q Consensus 4 ~~~t~s~L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~---------~~~~-- 72 (674) .+..+++|+++||++||.|||.|++++|++|||||+|||||||+|+++++++.+.+......... .+.+ T Consensus 6 ~~~~~~~L~~~lW~~ad~LRg~~d~~~Yk~yIL~llFlK~lsd~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 85 (544) T 3khk_A 6 EQQFLNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNIYYLPREDYDSDEAYQQ 85 (544) T ss_dssp -CCSHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCSSCCCGGGCSSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH T ss_conf 69999999999999999984877778808702157879873185799999999886215522343321220000578888 Q ss_pred ----------HHHCCCCCCCCCCCCHHHHHHH-HH--HHHHHHHHHHHCH-------HHHHHHHHCC-----HHHHHH-- Q ss_conf ----------6533896103680368861345-58--9999999975299-------9899987177-----235775-- Q gi|254780836|r 73 ----------VKVAGYSFYNTSEYSLSTLGST-NT--RNNLESYIASFSD-------NAKAIFEDFD-----FSSTIA-- 125 (674) Q Consensus 73 ----------~~~~g~~F~n~s~~~~~~l~~~-~~--~~nl~~yi~gfS~-------nv~dI~~~f~-----f~~~i~-- 125 (674) .......|++++.++|..+... +. .........+.+. .+..+|+.++ +...+. T Consensus 86 ~~~~~~~~~~~~~~~~~f~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~L~~v~~~~ 165 (544) T 3khk_A 86 AIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQDEQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRI 165 (544) T ss_dssp HHHHHHTCTHHHHTTTCCCCCTTTCHHHHHHCCSSCC----------------CHHHHHHHHHHHHHHHCGGGSSCSCCS T ss_pred HHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH T ss_conf 88765400023314664336741356888632303320234432201110144689999999999987686765033211 Q ss_pred --HHHHCCHHHHHHHHHCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf --4442362899998740245673--------337611443899999999986227665753681799999999731784 Q gi|254780836|r 126 --RLEKAGLLYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 (674) Q Consensus 126 --~L~~~~~L~~vI~~F~~idL~p--------~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~ 195 (674) ..-..+.|..+|..|+.+++.. ...+++.||++||+||++|++.+|+.+|||||||+|++|||+++ T Consensus 166 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~D~lG~~yE~ll~~~~~~~~k~~G~ffTP~~Iv~lmv~ll---- 241 (544) T 3khk_A 166 SQYQLDADKLIGLINEFSLTSFNNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML---- 241 (544) T ss_dssp SSSCCCHHHHHHHHHHHC------------------CCSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHH---- T ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHCC---- T ss_conf 0102767889999875530334541001100145452062899999999998860764765548189999998623---- Q ss_pred CHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC-----CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 011013877640311766540468999999999853100-----533322550466667889999999898088753345 Q gi|254780836|r 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 (674) Q Consensus 196 ~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~-----~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~ 270 (674) .|.. .+||||||||||||++|.+|+.+..... ......++||||+|+.+|+||+|||+|||.+.+ T Consensus 242 ------~p~~-~~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~Ei~~~~~~la~~nm~l~g~~~~--- 311 (544) T 3khk_A 242 ------EPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN--- 311 (544) T ss_dssp ------CCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB--- T ss_pred ------CCCC-CCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCHHHHHHHHHHHHHCCCCCC--- T ss_conf ------8998-837037777617899999999982452222202222011061503877999999988986188866--- Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 666682347545799986641899981685676531000111234-4226666535777747706599999999961466 Q gi|254780836|r 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 (674) Q Consensus 271 ~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e-~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~ 349 (674) .+|..+|+|.+|.+...+||+|++|||||++|.......... ...+..+|+..++|++++++++||||++++|++ T Consensus 312 ---~~~~~~d~l~~~~~~~~~fD~Il~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~- 387 (544) T 3khk_A 312 ---FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP- 387 (544) T ss_dssp ---CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE- T ss_pred ---CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC- T ss_conf ---4535675434655655446757506987766555300013545540345643457899874789999999971777- Q ss_pred CCCCCEEEEECCCCCCC-CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCC-----CCCCCEE Q ss_conf 57880799973897134-77644326899999988494688831767765578861699999468874-----3488389 Q gi|254780836|r 350 PNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQ 423 (674) Q Consensus 350 ~~~ggr~aIV~ngs~LF-~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~-----~rkgkV~ 423 (674) |||+|+|+|.|+|+ +|++ |..||+||+++++|+|||+||.++|++|||+||||||+|+|+. +|+|+|+ T Consensus 388 ---~G~~aiIvp~~~l~~~~~~---e~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Ilvl~K~k~~~~~~~~~~~~V~ 461 (544) T 3khk_A 388 ---TGSMALLLANGSMSSNTNN---EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVL 461 (544) T ss_dssp ---EEEEEEEEETHHHHCCGGG---HHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCCSSBTTBCCCTTEEE T ss_pred ---CCEEEEEECCCCCCCCCCH---HHHHHHHHHHCCCEEEEEECCHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEE T ss_conf ---7806999768854367871---7899999996695899972882006899997599999889887665445678389 Q ss_pred EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCE-EEEEEECCCCCCCCCCHHH Q ss_conf 9723677657640466442069899999999997210254104744466305-7899720442121008889 Q gi|254780836|r 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTG 494 (674) Q Consensus 424 lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e~e~ski~~~~~Fgy-~~vtverplr~~~~~~~~~ 494 (674) |||||+.+.+ .|+++|.|+++||++|+++|++|++....+ -+.. || +.|+++.-....|.+++.| T Consensus 462 fidas~~~~~---~~~~~~~l~~~~i~~I~~~~~~~~~~~~~~-~~~~--~~s~~v~~~eI~~ndy~L~~~r 527 (544) T 3khk_A 462 FIDARKLGYM---KDRVLRDFKDEDIQKLADTFHNWQQEWSEE-NNQA--GFCFSADLALIRKNDFVLTPGR 527 (544) T ss_dssp EEECTTCSEE---SSSSCEECCHHHHHHHHHHHHHHHHCCCTT-TCBT--TTEEEEEHHHHHHTTTCCCTTT T ss_pred EEECCCCCEE---CCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCC--CEEEEEEHHHHHHCCCEECHHH T ss_conf 9986545410---576678699999999999999987512322-6757--7489966999997695118675 No 2 >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} Probab=100.00 E-value=0 Score=698.81 Aligned_cols=435 Identities=25% Similarity=0.396 Sum_probs=342.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHH-----------HHHC-CCCCCC Q ss_conf 9841017888999999999874068883430872305489998967412339999999-----------9720-246889 Q gi|254780836|r 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----------YLAF-GGSNID 68 (674) Q Consensus 1 M~~~~~t~s~L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~-----------~~~~-~~~~~~ 68 (674) |++...|.++|.|+||++||.|||.|++++|++|||||+|||||+|.++....++.++ +... ...... T Consensus 1 m~~~~~t~~~L~s~lW~~ad~LRg~~~~~~Yk~~il~llFlK~lsD~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (542) T 3lkd_A 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEETESLDEALAVYRKYYEDEETH 80 (542) T ss_dssp -----CCHHHHHHHHHHTTHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHCTTTH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 99751569999999999999984898878848725158989871352178999999874420666776765422565658 Q ss_pred HHHHHHHCC-CCCCCCCCCCHHHHHHH--HHHHHHHHH------HHHHCHHHHHHHHHCCHHHHH---HHHHHCCHHHHH Q ss_conf 678765338-96103680368861345--589999999------975299989998717723577---544423628999 Q gi|254780836|r 69 LESFVKVAG-YSFYNTSEYSLSTLGST--NTRNNLESY------IASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKI 136 (674) Q Consensus 69 ~~~~~~~~g-~~F~n~s~~~~~~l~~~--~~~~nl~~y------i~gfS~nv~dI~~~f~f~~~i---~~L~~~~~L~~v 136 (674) .+.+....+ ..|+..+.++|..+... +...+++.+ |..-.+..++||+.+++.+.. .....+..|..+ T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~if~~i~~~~~~~~~~~~~~~~~l~~~ 160 (542) T 3lkd_A 81 EDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQGFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAV 160 (542) T ss_dssp HHHHHHHHHHHSCCCCGGGSHHHHHHHHHHTCCCHHHHHHHHHHHHTTCTTTTTTTTTCCTTCGGGCSSHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHH T ss_conf 99999766505602684124699997343624569999999888763126777788651010233055555565589998 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCH Q ss_conf 98740245673337611443899999999986227665753681799999999731784011013877640311766540 Q gi|254780836|r 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 (674) Q Consensus 137 I~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGT 216 (674) ++.+..+++.. .+.+.||++||+||++||+.+++++|||||||+|++|||+|+.... .+..+.+|||||||| T Consensus 161 ~~~~~~~~~~~--~~~D~~G~~yE~li~~~a~~~~~~~Ge~~TP~~Iv~lmv~l~~~~~------~~~~~~~I~DPacGs 232 (542) T 3lkd_A 161 MKELAVLDVAG--HAGDMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGR------EDKQGFTLYDATMGS 232 (542) T ss_dssp HHHHHHSCCSS--SSTTHHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTC------TTCTTCEEEETTCTT T ss_pred HHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC------CCCCCCEEECCCCCC T ss_conf 60010146553--3077889999999999888626647715898899985786425564------567898683277884 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEE Q ss_conf 468999999999853100533322550466667889999999898088753345666682347545799986--641899 Q gi|254780836|r 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHY 294 (674) Q Consensus 217 GGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~--~~kFD~ 294 (674) ||||++|.+++.+. ....+||||+|+.+|+||+|||+|||+... ...|..+|||.+|.+. ..+||+ T Consensus 233 GgfL~~a~~~~~~~-------~~~~~~G~e~~~~~~~la~~nl~l~g~~~~-----~~~i~~~d~l~~~~~~~~~~~fD~ 300 (542) T 3lkd_A 233 GSLLLNAKRYSRQP-------QTVVYFGQELNTSTYNLARMNMILHGVPIE-----NQFLHNADTLDEDWPTQEPTNFDG 300 (542) T ss_dssp STTGGGHHHHCSCT-------TTCEEEEEESCHHHHHHHHHHHHHTTCCGG-----GEEEEESCTTTSCSCCSSCCCBSE T ss_pred CHHHHHHHHHHHHH-------CCEEEEEEECCHHHHHHHHHHHHHHCCCCC-----CCEEECCCCCCCCCCCCCCCCEEE T ss_conf 55889888877500-------555787442667999999998787246542-----220320565444443232320003 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCH Q ss_conf 98168567653100011123442266665357777477065999999999614665788079997389713477644326 Q gi|254780836|r 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 (674) Q Consensus 295 vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGE 374 (674) ||+|||||.+|.........+ ..+...+.|+.++++++|+||++++|++ .|||+|||+|+|+||+|++ | T Consensus 301 Il~NPPfg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~fi~~~~~~L~~---~gG~~~iV~p~g~L~~~~~---e 369 (542) T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDP-----RFSPFGKLAPKSKADFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---E 369 (542) T ss_dssp EEECCCTTCCCCCCGGGGGST-----TTGGGSSCCCTTCCHHHHHHHHHHTBCT---TTCEEEEEEETHHHHCCTH---H T ss_pred EEECCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCHH---H T ss_conf 563488677767421112351-----0013577899862599999999998663---7872999954742235627---7 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 89999998849468883176776557886169999946887434883899723677657640466442069899999999 Q gi|254780836|r 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 (674) Q Consensus 375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~ 454 (674) +.||+||+++++|+|||+||.++||+|||+||||||+|+|+ +++|+|||||+.|.+ |+++|.|+++||++|++ T Consensus 370 ~~iR~~Lle~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~---~~~V~fida~~~~~~----~~~~~~l~~~~i~~i~~ 442 (542) T 3lkd_A 370 GTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNRT---NRDVYFIDASKEFDK----GKNQNIMTDAHIEKILN 442 (542) T ss_dssp HHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSSCS---BCCEEEEECTTCCEE----CSSSEECCHHHHHHHHH T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEEECCCC---CCCEEEEECCCCCCC----CCCCCCCCHHHHHHHHH T ss_conf 78888876358589999799766668898789999968988---881899988776567----87878599999999999 Q ss_pred HHHHCCCCC-CEEEEECCCC Q ss_conf 997210254-1047444663 Q gi|254780836|r 455 IYVSRENGK-FSRMLDYRTF 473 (674) Q Consensus 455 ~y~~f~e~e-~ski~~~~~F 473 (674) +|.++++.+ +|++++.++. T Consensus 443 ~~~~~~~~~~~s~~v~~~eI 462 (542) T 3lkd_A 443 AYKSREDIDKFAHLASFEEI 462 (542) T ss_dssp HHHHTCCBTTTEEEECHHHH T ss_pred HHHCCCCCCCCEEEEEHHHH T ss_conf 98631755893799689999 No 3 >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 Probab=100.00 E-value=0 Score=630.72 Aligned_cols=390 Identities=21% Similarity=0.335 Sum_probs=312.3 Q ss_pred CCCCHHHHHHHHHHHHHHHC-CCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC Q ss_conf 10178889999999998740-68883430872305489998967412339999999972024688967876533896103 Q gi|254780836|r 4 FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 (674) Q Consensus 4 ~~~t~s~L~s~iW~~Ad~LR-g~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~F~n 82 (674) |+-+.++|+++||++||+|| |.+++++|+++|++|+||||+|+..++. +|. T Consensus 1 m~~~~~~l~~klw~~ad~lR~ggi~~~~y~~~i~~llFlK~~~e~~~e~----------------------------~~i 52 (541) T 2ar0_A 1 MSLNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----------------------------EYL 52 (541) T ss_dssp -----CHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHTCHH----------------------------HHS T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHCCCCH----------------------------HHC T ss_conf 9986899999999999998669999899999999999987320152846----------------------------447 Q ss_pred CCCCCHHHHHH---HHHHHHHHHHHHHH----CHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCC--CCCCCH Q ss_conf 68036886134---55899999999752----9998999871772357754442362899998740245673--337611 Q gi|254780836|r 83 TSEYSLSTLGS---TNTRNNLESYIASF----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDR 153 (674) Q Consensus 83 ~s~~~~~~l~~---~~~~~nl~~yi~gf----S~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p--~~v~n~ 153 (674) +..+.|..|.. +.....+...+..+ +.-+++||.++.+ ++.+...|..||+.|..+++.+ ...+.+ T Consensus 53 pe~~~w~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~if~~~~~-----~~~~~~~l~~lv~~i~~~~~~~~~~~~~~D 127 (541) T 2ar0_A 53 PEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVST-----TITEPKQITALVSNMDSLDWYNGAHGKSRD 127 (541) T ss_dssp CTTSSHHHHHTCCHHHHHHHHHHHHHHHTSSSCHHHHHHHTTCCC-----CCCCHHHHHHHHHHHHTCCC---------- T ss_pred CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 865878999852383789999999999987647889775242443-----236858999999865432555432455600 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 44389999999998622766575368179999999973178401101387764031176654046899999999985310 Q gi|254780836|r 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674) Q Consensus 154 ~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674) .||++||+||++|++..++++|||||||+||++||+++ .|....+||||||||||||++|.+|+.+.... T Consensus 128 ~~G~~YE~ll~~~a~~~~k~~GqffTP~~Iv~~mv~ll----------~p~~~~~I~DPacGsG~fL~~a~~~l~~~~~~ 197 (541) T 2ar0_A 128 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTND 197 (541) T ss_dssp ----------------------CCCCCHHHHHHHHHHH----------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTT T ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH----------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 77999999999998761775875679899999999862----------89988730465778560579999999984366 Q ss_pred CCCC--------CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC Q ss_conf 0533--------32255046666788999999989808875334566668234754579998664189998168567653 Q gi|254780836|r 234 HKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 (674) Q Consensus 234 ~~~~--------~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~W 305 (674) .... ....+||||+++.+|+||+|||++||++.+.. ...++..+++|..|.....+||+||+|||||..| T Consensus 198 ~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~g~~~~~~--~~~~~~~~~~l~~d~~~~~~fD~Vl~NPPfg~~~ 275 (541) T 2ar0_A 198 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD--HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 275 (541) T ss_dssp TTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGG--GTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCS T ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC--CCCCHHCCCCHHHCCCCCCCCCEEEECCCCCCCC T ss_conf 21110467888887666302066999999986466345630113--4750210450433044443466687369976644 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 10001112344226666535777747706599999999961466578807999738971347764432689999998849 Q gi|254780836|r 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 (674) Q Consensus 306 k~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d 385 (674) ..+ ++..+.|+.++++++||||++++|++ |||+|+|+|.|+||+|++ ++.||++|++++ T Consensus 276 ~~~--------------~~~~~~~~~~~~~~~Fi~~~l~~Lk~----~Gr~aiIlP~~~Lf~~~~---~~~iR~~Lle~~ 334 (541) T 2ar0_A 276 GTN--------------ITRTFVHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKC 334 (541) T ss_dssp SCC--------------CCSCCSSCCSCHHHHHHHHHHHHEEE----EEEEEEEEEHHHHHCCTH---HHHHHHHHHHHE T ss_pred CCC--------------CCCCCCCCCCCHHHHHHHHHHHHCCC----CCEEEEEECCCHHHCCHH---HHHHHHHHHHCC T ss_conf 434--------------30002576552779999999997378----976999956820101000---079999998629 Q ss_pred CEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC------CCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 468883176776557886169999946887434------88389972367765764046644206989999999999721 Q gi|254780836|r 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 (674) Q Consensus 386 ~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~r------kgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f 459 (674) .|+|||.||+++||+|||+||||||+|+|+..+ +++|+||||+..+.+ +.|||+|+++||++|+++|..+ T Consensus 335 ~l~aII~LP~~~F~~t~v~t~Il~l~K~k~~~~~~~~~~~~~v~f~d~~~~~~~----~~k~~~l~~e~i~~i~~~y~~~ 410 (541) T 2ar0_A 335 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS----FGKRTPFTDEHLQPFERVYGED 410 (541) T ss_dssp EEEEEEECCSSCSSSCSCCEEEEEEEEBCSSCTTCCSCCCCEEEEEECSTTCCC----CSSSSCCCGGGTHHHHHHHCSC T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEHHHCCCC----CCCCCCCCHHHHHHHHHHHHHC T ss_conf 189999787044789999769999989987765444577660799984321876----6698849999999999997213 Q ss_pred CCCC Q ss_conf 0254 Q gi|254780836|r 460 ENGK 463 (674) Q Consensus 460 ~e~e 463 (674) .++. T Consensus 411 ~~~~ 414 (541) T 2ar0_A 411 PHGL 414 (541) T ss_dssp TTSC T ss_pred CCCC T ss_conf 2234 No 4 >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 Probab=100.00 E-value=0 Score=597.19 Aligned_cols=406 Identities=21% Similarity=0.342 Sum_probs=316.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC-CCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC Q ss_conf 9841017888999999999874068-883430872305489998967412339999999972024688967876533896 Q gi|254780836|r 1 MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79 (674) Q Consensus 1 M~~~~~t~s~L~s~iW~~Ad~LRg~-~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~ 79 (674) |+.++.|+++|+++||++||.|||+ +++++|..+|++|+|||++++..+ ..... T Consensus 2 m~~~~~~~~~l~~~iW~~ad~lRg~g~~~~~y~~~i~~llflK~~~e~~~-----------~~~~~-------------- 56 (445) T 2okc_A 2 MATNSSTEQSLTKKVWNLATTLAGQGIGFTDYITQLTYLLFLKMDAENVE-----------MFGEE-------------- 56 (445) T ss_dssp --------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-----------HTCCC-------------- T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------HHCCC-------------- T ss_conf 88775009999999999999964799988899999999998777151124-----------44450-------------- Q ss_pred CCCCCCCCHHHH---HHHHHHHHHH---HHHHHHCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCH Q ss_conf 103680368861---3455899999---9997529998999871772357754442362899998740245673337611 Q gi|254780836|r 80 FYNTSEYSLSTL---GSTNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 (674) Q Consensus 80 F~n~s~~~~~~l---~~~~~~~nl~---~yi~gfS~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~ 153 (674) +..++.+.|..+ ...++...+. .++...+..+++||.+.. .++.+...|..||++|+.++++. .+.+ T Consensus 57 ~~~p~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~-----~~~~~~~~L~~~i~~i~~~~~~~--~~~d 129 (445) T 2okc_A 57 SAIPTGYQWADLIAFDGLDLVKQYEETLKLLSELDNLIGTIYTKAQ-----NKIDKPVYLKKVITMIDEEQWLI--MDGD 129 (445) T ss_dssp CSSCTTCSHHHHHTCCSHHHHHHHHHHHHHHHTSCHHHHHHTTTCC-----CCCCCHHHHHHHHHHHHTSCCTT--SCSH T ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHCCC--CCCH T ss_conf 1499778589987165077999999999986864416755234555-----35587689999999864551356--7821 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 44389999999998622766575368179999999973178401101387764031176654046899999999985310 Q gi|254780836|r 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674) Q Consensus 154 ~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674) .||++||+||++|++++++++|||||||+|+++||+++ .|....+||||||||||||+++.+++.+.+.. T Consensus 130 ~~G~~yE~ll~~~a~~~~k~~GqffTP~~Iv~~mv~ll----------~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~ 199 (445) T 2okc_A 130 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSAS 199 (445) T ss_dssp HHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHH----------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-C T ss_pred HHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC----------CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCC T ss_conf 75899999999998752543804659899999999760----------79999978127889766599999999873122 Q ss_pred CCC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH Q ss_conf 053---33225504666678899999998980887533456666823475457999866418999816856765310001 Q gi|254780836|r 234 HKI---PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 (674) Q Consensus 234 ~~~---~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~ 310 (674) ... ....++||||+++.++++|+|||++||.... ..+|..+|++..+ +..+||+||+|||||..|..... T Consensus 200 ~~~~~~~~~~~i~G~e~~~~~~~la~~nl~l~~~~~~-----~~~i~~~d~~~~~--~~~~fD~Ii~NPPf~~~~~~~~~ 272 (445) T 2okc_A 200 KEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD-----RSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVD 272 (445) T ss_dssp CHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS-----CCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCC T ss_pred HHHHHHHHHHCEECEECCHHHHHHHHHHCCCCCCCCC-----CCEEECCCHHHHC--CCCCCCEEECCCCCCCCCCCCCC T ss_conf 7777553010142341209999999962310277643-----2012215303202--43468722458997888655331 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 11234422666653577774770659999999996146657880799973897134776443268999999884946888 Q gi|254780836|r 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 (674) Q Consensus 311 ~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaI 390 (674) ..|+.. .++.++++++||+|+++.|++ |||+|+|+|.|+||++++ +..||++|++++.|+|| T Consensus 273 ----------~~~~~~-~~~~~~~~~~Fi~~~l~~Lk~----~G~~aiIvP~~~L~~~~~---~~~iR~~Ll~~~~i~~I 334 (445) T 2okc_A 273 ----------INRPDF-YVETKNNQLNFLQHMMLMLKT----GGRAAVVLPDNVLFEAGA---GETIRKRLLQDFNLHTI 334 (445) T ss_dssp ----------CCCTTS-SSCCSCHHHHHHHHHHHHEEE----EEEEEEEEEHHHHHCSTH---HHHHHHHHHHHEEEEEE T ss_pred ----------CCHHHH-CCCCCCHHHHHHHHHHHHHCC----CCEEEEEECCHHHHCCCH---HHHHHHHHHHCCCCEEE T ss_conf ----------022443-012330779999999998217----985999934288647630---58999999981985289 Q ss_pred EECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC Q ss_conf 31767765578861699999468874348838997236776576404664420698999999999972102541047444 Q gi|254780836|r 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 (674) Q Consensus 391 I~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e~e~ski~~~ 470 (674) |.||.++|++||++||||||+|+|+.+ +|+||||+..|.+ +.++|.|+++||++|+++|.++++..... .+ T Consensus 335 i~lp~~~F~~t~v~t~Ilvl~K~k~~~---~V~fid~~~~~~~----~~~~n~l~~~~i~~i~~~~~~~~~~~~~~--~~ 405 (445) T 2okc_A 335 LRLPTGIFYAQGVKANVLFFSKGQPTK---EIWFYDYRTDIKH----TLATNKLERHHLDDFVSCYNNRVEIYDAE--NN 405 (445) T ss_dssp EECCSSSSSSTTCCEEEEEEEESSCCS---EEEEEECSTTCCC----CSSSSCCCGGGGHHHHHHHHSCCCCCBTT--TB T ss_pred EECCCCCCCCCCCCEEEEEEECCCCCC---CEEEEECCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CC T ss_conf 999725546899965999998999987---3799987443331----35778699999999999998677654202--47 Q ss_pred CCCCEEEEEEEC Q ss_conf 663057899720 Q gi|254780836|r 471 RTFGYRRIKVLR 482 (674) Q Consensus 471 ~~Fgy~~vtver 482 (674) .+.-++.|+++. T Consensus 406 ~~~~~~~v~~~e 417 (445) T 2okc_A 406 PQGRWRKYPVDE 417 (445) T ss_dssp TTCSEEEEEHHH T ss_pred CCCCEEEEEHHH T ss_conf 677179801999 No 5 >2f8l_A Hypothetical protein LMO1582; 16411011, structural genomics, PSI, protein structure initiative, joint center for structural genomics; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Probab=100.00 E-value=0 Score=342.76 Aligned_cols=287 Identities=17% Similarity=0.212 Sum_probs=209.0 Q ss_pred HHHHHHCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH Q ss_conf 99975299989998717723577544423628999987402456733376114438999999999862276657536817 Q gi|254780836|r 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 (674) Q Consensus 102 ~yi~gfS~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR 181 (674) .|++++......++..-... ...+. ......+.+.+..+++. .++...+|.+||+++.++.. .+..+|+||||| T Consensus 39 ~~leal~e~~~~i~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~-~~~~~g~~~TP~ 112 (344) T 2f8l_A 39 SYLEAVYETGENLFQKEVLQ--KEELS-SEKQLKLQASYESIELE--NFSNEEIRKGLQLALLKGMK-HGIQVNHQMTPD 112 (344) T ss_dssp CHHHHHHHHHHHHHHTSCTT--CCC-----CHHHHHHHHHTCCGG--GSCHHHHHHHHHHHHHHHTS-SSCCGGGCCCCH T ss_pred HHHHHHHHHHHHHHHHHHHH--HHCCC-HHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHH-HCCCCCEECCCH T ss_conf 37899999878875203554--30168-88999999999975453--25878899999999999998-436488137848 Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898 Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674) Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674) .|+.+|+.++. .+. .+....+|+|||||||+||+++.+++.... ....++||+|+++.++++|++||.+ T Consensus 113 ~i~~~m~~l~~-----~~~-~~~~~~~vlDp~cGsG~~l~~~~~~l~~~~-----~~~~~~~g~di~~~~~~~a~~n~~~ 181 (344) T 2f8l_A 113 SIGFIVAYLLE-----KVI-QKKKNVSILDPACGTANLLTTVINQLELKG-----DVDVHASGVDVDDLLISLALVGADL 181 (344) T ss_dssp HHHHHHHHHHH-----HHH-TTCSEEEEEETTCTTSHHHHHHHHHHHTTS-----SCEEEEEEEESCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHH-----HHH-CCCCCCEEEECCCCCCHHHHHHHHHHHHCC-----CCCEEEEEEECCHHHHHHHHHCCCC T ss_conf 99999999999-----983-789998899548996689999999987536-----7761899998999999999964000 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 08875334566668234754579998664189998168567653100011123442266665357777477065999999 Q gi|254780836|r 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 (674) Q Consensus 262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh 341 (674) ++... ++..+|++... ...+||+|++|||||..|..... ..+..+ +....++.+++|++| T Consensus 182 ~~~~~--------~~~~~d~~~~~--~~~~fD~iv~NPP~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~fi~~ 241 (344) T 2f8l_A 182 QRQKM--------TLLHQDGLANL--LVDPVDVVISDLPVGYYPDDENA-------KTFELC---REEGHSFAHFLFIEQ 241 (344) T ss_dssp HTCCC--------EEEESCTTSCC--CCCCEEEEEEECCCSEESCHHHH-------TTSTTC---CSSSCEEHHHHHHHH T ss_pred CCCHH--------HHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHH-------HHHCCC---CCCCCCHHHHHHHHH T ss_conf 22212--------33100110013--46776721157996676300244-------420001---357742599999999 Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC-CC Q ss_conf 99961466578807999738971347764432689999998849468883176776557886169999946887434-88 Q gi|254780836|r 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-RG 420 (674) Q Consensus 342 ~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~r-kg 420 (674) +++.|++ ||++++|+|.|.|+ |.. +..+|++|++++.|++||.||.++|++|+++||||||+|+++..+ .+ T Consensus 242 ~~~~Lk~----~G~~~~I~P~~~l~-~~~---~~~lR~~L~~~~~i~~ii~Lp~~~F~~~~~~t~Ilvl~K~~~~~~~~~ 313 (344) T 2f8l_A 242 GMRYTKP----GGYLFFLVPDAMFG-TSD---FAKVDKFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADVDVKPPK 313 (344) T ss_dssp HHHTEEE----EEEEEEEEEGGGGG-STT---HHHHHHHHHHHEEEEEEEECCGGGSCC-CCCEEEEEEEECCTTCCCCS T ss_pred HHHHCCC----CCEEEEEECCHHCC-CCH---HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCC T ss_conf 9985488----86299996643116-846---999999998589189986578211799998769999987898767777 Q ss_pred CEEEEECHHHHHH Q ss_conf 3899723677657 Q gi|254780836|r 421 KVQLINATDLWTS 433 (674) Q Consensus 421 kV~lIDAs~~~~~ 433 (674) +|+|+|++.++.+ T Consensus 314 ~v~~~~~~~~~~~ 326 (344) T 2f8l_A 314 EVLLANLSSLTDP 326 (344) T ss_dssp SCEEEECCCSSCH T ss_pred EEEEEECCCCCCH T ss_conf 0899988643377 No 6 >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Probab=100.00 E-value=2.4e-38 Score=268.35 Aligned_cols=208 Identities=17% Similarity=0.170 Sum_probs=155.3 Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 99999986227665753681799999999731784011013877640311766540468999999999853100533322 Q gi|254780836|r 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 (674) Q Consensus 161 ~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~ 240 (674) -+++..+....++-|+||||.+|+++|++++. +....+|+|||||||+||+.+.+++.. .. T Consensus 5 ~~~~~~s~~~~k~~G~~yTP~~i~~~~~~~l~----------~~~~~~IlDPacGsG~FL~~~~~~~~~---------~~ 65 (421) T 2ih2_A 5 PLLSLPSNSAPRSLGRVETPPEVVDFMVSLAE----------APRGGRVLEPACAHGPFLRAFREAHGT---------AY 65 (421) T ss_dssp ----------------CCCCHHHHHHHHHHCC----------CCTTCEEEEETCTTCHHHHHHHHHHCS---------CS T ss_pred HHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC----------CCCCCEEEECCCCHHHHHHHHHHHCCC---------CC T ss_conf 66421100133429878891999999999478----------999699996877646999999986776---------78 Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH-HHHCC Q ss_conf 55046666788999999989808875334566668234754579998664189998168567653100011123-44226 Q gi|254780836|r 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-EHKNG 319 (674) Q Consensus 241 ~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~-e~~~~ 319 (674) ++||+|+++.++++|+++ +|..||+|..+. ..+||+|++||||+............ ..... T Consensus 66 ~i~G~did~~~~~la~~~----------------~i~~~D~l~~~~--~~~fD~VigNPPy~~~~~~~~~~~~~~~~~~~ 127 (421) T 2ih2_A 66 RFVGVEIDPKALDLPPWA----------------EGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKD 127 (421) T ss_dssp EEEEEESCTTTCCCCTTE----------------EEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHH T ss_pred EEEEEECCHHHHHHHHHH----------------HHHHCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH T ss_conf 699997989999999974----------------277377333685--45777787257655445455442123333222 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 66653577774770659999999996146657880799973897134776443268999999884946888317677655 Q gi|254780836|r 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 (674) Q Consensus 320 ~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy 399 (674) ...+.........|-..+|++++++.|++ ||++|+|+|.|.|+... ...+|++|++++.+ +|.+|.++|. T Consensus 128 ~~~~~~~~~~~~~dl~~~Fi~~~l~~lk~----~G~~~~I~P~s~l~~~~----~~~lR~~L~~~~~i--~i~~~~~~F~ 197 (421) T 2ih2_A 128 LYKKAFSTWKGKYNLYGAFLEKAVRLLKP----GGVLVFVVPATWLVLED----FALLREFLAREGKT--SVYYLGEVFP 197 (421) T ss_dssp HHHHHCTTCCTTCCHHHHHHHHHHHHEEE----EEEEEEEEEGGGGTCGG----GHHHHHHHHHHSEE--EEEEEESCST T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCC----CCCEEEEECCCCCCCCC----HHHHHHHHHHCCCE--EEECCCCCCC T ss_conf 22013567899653999999999996377----88189990673112641----39999999963979--9984731135 Q ss_pred CCCCCEEEEEEECCCC Q ss_conf 7886169999946887 Q gi|254780836|r 400 RTNIATYLWILSNRKT 415 (674) Q Consensus 400 nTgI~t~Iwil~k~K~ 415 (674) +|+++|||++++|+++ T Consensus 198 ~a~v~t~Il~l~K~~~ 213 (421) T 2ih2_A 198 QKKVSAVVIRFQKSGK 213 (421) T ss_dssp TCCCCEEEEEEESSSC T ss_pred CCCCCEEEEEEECCCC T ss_conf 7887469999982798 No 7 >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus} Probab=99.57 E-value=1.1e-13 Score=107.35 Aligned_cols=101 Identities=7% Similarity=-0.004 Sum_probs=73.7 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) ...+.||.+.++++...+ .....+|+|++||||++.+....... . ..++|.|+++..... T Consensus 35 ~~~liP~~~~~~l~~~~~----------~~~~~~vLDig~G~G~~~~~~a~~~~----~------~~v~~vDi~~~~~~~ 94 (230) T 3evz_A 35 PKGLVTTPISRYIFLKTF----------LRGGEVALEIGTGHTAMMALMAEKFF----N------CKVTATEVDEEFFEY 94 (230) T ss_dssp TTSCCCCHHHHHHHHHTT----------CCSSCEEEEECCTTTCHHHHHHHHHH----C------CEEEEEECCHHHHHH T ss_pred CCCCCCCCHHHHHHHHHC----------CCCCCEEEEEECCHHHHHHHHHHHCC----C------CEEEEEECCCCHHHH T ss_conf 995149837799999845----------78989899940744399999999779----9------879999886311246 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC Q ss_conf 9999898088753345666682347545799986641899981685676 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~ 303 (674) |+.|+-..+.+. +|...|.-.-..+...+||+|++||||.. T Consensus 95 a~~n~~~~~~~~--------~i~~~~~~~~~~~~~~~fD~Iv~NPPy~~ 135 (230) T 3evz_A 95 ARRNIERNNSNV--------RLVKSNGGIIKGVVEGTFDVIFSAPPYYD 135 (230) T ss_dssp HHHHHHHTTCCC--------EEEECSSCSSTTTCCSCEEEEEECCCCC- T ss_pred HHHHHHHCCCCC--------EEEEEECCCHHHCCCCCCCEEEECCCCCC T ss_conf 776688606651--------79985211012135765248998999556 No 8 >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structural genomics; HET: SAH; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.66.1.32 Probab=99.38 E-value=7.7e-13 Score=101.86 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=72.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH Q ss_conf 66575368179999999973178401101387764031176654046899999999985310053332255046666788 Q gi|254780836|r 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 (674) Q Consensus 172 ~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t 251 (674) ..-|||.||.+++.-|+.+... ..+-+ +.+|+|++||||++.+.+... + ...++|.|+++.+ T Consensus 23 ~~l~q~~Tp~~ia~~~~~~a~~-----~~dl~--g~~vlDlg~G~G~l~i~a~~~--------g---~~~v~~vDid~~~ 84 (207) T 1wy7_A 23 VWLEQYRTPGNAASELLWLAYS-----LGDIE--GKVVADLGAGTGVLSYGALLL--------G---AKEVICVEVDKEA 84 (207) T ss_dssp GGGTCCCCCHHHHHHHHHHHHH-----TTSST--TCEEEEETCTTCHHHHHHHHT--------T---CSEEEEEESCHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHH-----CCCCC--CCEEEECCCCCCHHHHHHHHC--------C---CCEEEEECCCHHH T ss_conf 3511379999999999999986-----49879--898999134256999999974--------9---9869998798999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 99999998980887533456666823475457999866418999816856765 Q gi|254780836|r 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 252 yaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) ..+|+.|+-..+.+. ++..+|... ...+||+|++|||||.. T Consensus 85 ~~~a~~N~~~~~~~~--------~~~~~d~~~----~~~~~D~ii~npP~~~~ 125 (207) T 1wy7_A 85 VDVLIENLGEFKGKF--------KVFIGDVSE----FNSRVDIVIMNPPFGSQ 125 (207) T ss_dssp HHHHHHHTGGGTTSE--------EEEESCGGG----CCCCCSEEEECCCCSSS T ss_pred HHHHHHHHHHCCCCC--------EEEECCHHH----HHCCCCEEECCCCCCHH T ss_conf 999999999839982--------799766788----61465464448885201 No 9 >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Probab=99.25 E-value=1.7e-11 Score=93.09 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=61.9 Q ss_pred CEEECCCCCCHHHHHHHHHHHHH----------------------------HHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 40311766540468999999999----------------------------85310053332255046666788999999 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVA----------------------------DCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~----------------------------~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) ..+++||.||||.+|++|.-... +............+||.|+++....+|+. T Consensus 196 ~~~l~DPmCGSGTilIEAal~a~~~~pg~~r~f~f~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~g~D~d~~~i~~a~~ 275 (385) T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385) T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH T ss_conf 98557888995679999999980879775622344322126889999999999863204667867996587889999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 98980887533456666823475457999866418999816856765 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) |.-.-|+.... .+..+|...-. .....++|++|||||.. T Consensus 276 N~~~agv~~~i------~~~~~d~~~~~--~~~~~~~ivtNPPYG~R 314 (385) T 3ldu_A 276 NAEIAGVDEYI------EFNVGDATQFK--SEDEFGFIITNPPYGER 314 (385) T ss_dssp HHHHHTCGGGE------EEEECCGGGCC--CSCBSCEEEECCCCCCS T ss_pred HHHHCCCCCCE------EEEECCHHHCC--CCCCCCEEEECCCCCCC T ss_conf 99973997637------88754587759--99999879958970201 No 10 >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Probab=99.17 E-value=8.5e-10 Score=82.00 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=93.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) ..||-||-+|..-|+..+... .+-. +.+|.|++||||.+-+.+.. .+ ...++|.|+++.+.. T Consensus 27 leQY~t~~~iaa~~~~~~~~~-----gd~~--Gk~VLDlGcGtG~l~i~a~~----~g-------a~~V~~vDid~~a~~ 88 (200) T 1ne2_A 27 LEQYPTDASTAAYFLIEIYND-----GNIG--GRSVIDAGTGNGILACGSYL----LG-------AESVTAFDIDPDAIE 88 (200) T ss_dssp ---CCCCHHHHHHHHHHHHHH-----TSSB--TSEEEEETCTTCHHHHHHHH----TT-------BSEEEEEESCHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCCC--CCEEEECCCCHHHHHHHHHH----CC-------CCEEEEEECCHHHHH T ss_conf 100799889999999999866-----9989--39899875751099999996----79-------987967508999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH Q ss_conf 99999898088753345666682347545799986641899981685676531000111234422666653577774770 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd 333 (674) +|+.|.- . -++..+|-.. ...+||.|++|||||...+ . T Consensus 89 ~a~~N~~--~----------~~~~~~d~~~----~~~~fD~Vi~NPPfg~~~~--------------------------~ 126 (200) T 1ne2_A 89 TAKRNCG--G----------VNFMVADVSE----ISGKYDTWIMNPPFGSVVK--------------------------H 126 (200) T ss_dssp HHHHHCT--T----------SEEEECCGGG----CCCCEEEEEECCCC-------------------------------- T ss_pred HHHHHHH--H----------CCCEEEEHHH----CCCCCCEEEECCCCCHHHC--------------------------C T ss_conf 9999898--5----------7853765210----5775488987798631101--------------------------6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE----EECCCCCCCC----CCCCE Q ss_conf 659999999996146657880799973897134776443268999999884946888----3176776557----88616 Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI----VALPTDLFFR----TNIAT 405 (674) Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaI----I~LP~~lFyn----TgI~t 405 (674) .+..||...... + .+|.. +. .+ +.+.-|++.+-+.+.+... ..||.-..+. --|.. T Consensus 127 ~D~~fl~~a~~~--------~--~~vys---~h--~~-~~~~~i~~~~~~~g~i~~~~~~~f~lp~~y~~H~~~~~~i~v 190 (200) T 1ne2_A 127 SDRAFIDKAFET--------S--MWIYS---IG--NA-KARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEA 190 (200) T ss_dssp -CHHHHHHHHHH--------E--EEEEE---EE--EG-GGHHHHHHHHHHHEEEEEEEEEEEECCSCCC------CEEEE T ss_pred CCHHHHHHHHCC--------C--CEEEE---EE--HH-HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCEEEEEEE T ss_conf 649999998605--------8--58997---20--13-269999998642753999985167784013033130217999 Q ss_pred EEEEEEC Q ss_conf 9999946 Q gi|254780836|r 406 YLWILSN 412 (674) Q Consensus 406 ~Iwil~k 412 (674) .+|.+.+ T Consensus 191 ~~~ri~~ 197 (200) T 1ne2_A 191 VIFGVRN 197 (200) T ss_dssp EEEEEEE T ss_pred EEEEEEC T ss_conf 9999932 No 11 >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Probab=99.15 E-value=3e-10 Score=84.96 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=101.4 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) -+=||+=..++|+.+... . .....+|.|-|||||-.-+..... .+ ...++|.|++++..++|+ T Consensus 88 vlIPRpeTE~lv~~~l~~----~---~~~~~~ilDlgtGsG~I~i~la~~----~p------~~~v~a~Dis~~Al~~A~ 150 (276) T 2b3t_A 88 TLIPRPDTECLVEQALAR----L---PEQPCRILDLGTGTGAIALALASE----RP------DCEIIAVDRMPDAVSLAQ 150 (276) T ss_dssp SCCCCTTHHHHHHHHHHH----S---CSSCCEEEEETCTTSHHHHHHHHH----CT------TSEEEEECSSHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHH----C---CCCCCEEEEECCCCHHHHHHHHHH----CC------CCEEEEECCCHHHHHHHH T ss_conf 706997699999999875----1---457861764146532999999986----89------875886417668899999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC--CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH Q ss_conf 99898088753345666682347545799986641899981685676--5310001112344226666535777747706 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK--KWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~--~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674) -|.-.+|... -++..||-+.. ..+.+||+|+|||||=. +|+.....++.|... .+-...|| T Consensus 151 ~Na~~~~~~~-------v~~~~~D~~~~--~~~~~fDlIvsNPPYi~~~~~~~~~~~v~~EP~~--------AL~gg~dG 213 (276) T 2b3t_A 151 RNAQHLAIKN-------IHILQSDWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLT--------ALVAADSG 213 (276) T ss_dssp HHHHHHTCCS-------EEEECCSTTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCST--------TTBCHHHH T ss_pred HHHHHCCCCC-------EEEEECCCCCC--CCCCCEEEEEECCCCCCHHHHHCCCCCCCCCHHH--------HHHCCCCH T ss_conf 9999749987-------79997576433--6788415788569867713454077521233788--------86178647 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 5999999999614665788079997389713477644326899999988494 Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 (674) Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ 386 (674) +.|+.+++.......+.||.+.+.+.. .+ ...+++.+.++++ T Consensus 214 -l~~~~~ii~~a~~~L~~~G~l~lEig~--------~q-~~~v~~~~~~~gf 255 (276) T 2b3t_A 214 -MADIVHIIEQSRNALVSGGFLLLEHGW--------QQ-GEAVRQAFILAGY 255 (276) T ss_dssp -THHHHHHHHHHGGGEEEEEEEEEECCS--------SC-HHHHHHHHHHTTC T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEEECC--------HH-HHHHHHHHHHCCC T ss_conf -899999999999851679889999890--------69-9999999997799 No 12 >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str} Probab=99.14 E-value=1.6e-10 Score=86.80 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=60.3 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHH----------------------------HHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 403117665404689999999998----------------------------5310053332255046666788999999 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVAD----------------------------CGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~----------------------------~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) ..+++||.||||.+|++|.-.... ............++|.|+++...+.|+. T Consensus 202 ~~~llDPmCGSGTilIEAAl~a~~~~pg~~R~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~i~g~D~d~~ai~~a~~ 281 (393) T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393) T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH T ss_conf 98330678996679999999973878886624354422468999999999998754305887638999598999999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 98980887533456666823475457999866418999816856765 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) |.---|+.... .+..+|-..-+ .....++|++|||||.. T Consensus 282 N~~~ag~~~~i------~~~~~d~~~~~--~~~~~~~iv~NPPYG~R 320 (393) T 3k0b_A 282 NAVEAGLGDLI------TFRQLQVADFQ--TEDEYGVVVANPPYGER 320 (393) T ss_dssp HHHHTTCTTCS------EEEECCGGGCC--CCCCSCEEEECCCCCCS T ss_pred HHHHCCCCCHH------HHHHCCHHHCC--CCCCCCEEEECCCCHHH T ss_conf 99973870000------03320197759--99999789988984411 No 13 >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Probab=99.08 E-value=1.7e-10 Score=86.55 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=76.5 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674) +.....|.|++||||......... .+ ...++|.|+++....+|+-|.-+...+.- .+ .-.+..||-. T Consensus 34 ~~~~~rVLDlG~G~G~i~l~La~r----~~------~~~v~gvEi~~~~~~lAr~N~~ln~~~~~--~~-ri~~~~~Di~ 100 (260) T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAAR----LE------KAEVTLYERSQEMAEFARRSLELPDNAAF--SA-RIEVLEADVT 100 (260) T ss_dssp CCSCEEEEECCSSSSHHHHHHHHH----CT------TEEEEEEESSHHHHHHHHHHTTSGGGTTT--GG-GEEEEECCTT T ss_pred CCCCCEEEECCHHHHHHHHHHHHH----CC------CCEEEEEECCHHHHHHHHHHHHHHHHCCC--CC-CCEEEECHHH T ss_conf 889899999543676999999985----89------98899998999999999999998654433--23-5358963321 Q ss_pred CC------CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCE Q ss_conf 79------9986641899981685676531000111234422666653577774770659-9999999961466578807 Q gi|254780836|r 283 SK------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGR 355 (674) Q Consensus 283 ~~------d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr 355 (674) .. ..++..+||+|++||||... .... ..+ ......|... .+.+ .|+......||+ ||+ T Consensus 101 ~~~~~~~~~~~~~~~fD~VvsNPPY~~~--~~~~--~~~-~~~~~a~~~~------~~~l~~~i~~a~~lLkp----gG~ 165 (260) T 2ozv_A 101 LRAKARVEAGLPDEHFHHVIMNPPYNDA--GDRR--TPD-ALKAEAHAMT------EGLFEDWIRTASAIMVS----GGQ 165 (260) T ss_dssp CCHHHHHHTTCCTTCEEEEEECCCC--------------------------------CCHHHHHHHHHHHEEE----EEE T ss_pred CCCHHHHHHHHCCCCCCEEEECCCCCCC--CCCC--CCC-HHHHHHHHHC------CCCHHHHHHHHHHHCCC----CCE T ss_conf 3221234433136762679866984466--6566--877-6778877504------68899999999997288----989 Q ss_pred EEEECC Q ss_conf 999738 Q gi|254780836|r 356 AAIVLS 361 (674) Q Consensus 356 ~aIV~n 361 (674) +++|++ T Consensus 166 l~~i~~ 171 (260) T 2ozv_A 166 LSLISR 171 (260) T ss_dssp EEEEEC T ss_pred EEEEEC T ss_conf 999987 No 14 >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Probab=98.91 E-value=1e-08 Score=74.98 Aligned_cols=129 Identities=9% Similarity=0.124 Sum_probs=84.6 Q ss_pred CCCCCCCHH---HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH Q ss_conf 657536817---99999999731784011013877640311766540468999999999853100533322550466667 Q gi|254780836|r 173 GAEDFMTPR---DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674) Q Consensus 173 ~aGeffTPR---~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674) .+|- |+|+ ...+++++.+ .+....+|+|.+||||.+.+.+.+ .. -.++|.|+++ T Consensus 28 ~~gv-f~~~~~d~~t~~Ll~~l----------~~~~~~~vLDiGcG~G~~~~~la~-------~~-----~~v~~iDis~ 84 (194) T 1dus_A 28 DSGV-FSYGKVDKGTKILVENV----------VVDKDDDILDLGCGYGVIGIALAD-------EV-----KSTTMADINR 84 (194) T ss_dssp ETTS-TTTTSCCHHHHHHHHHC----------CCCTTCEEEEETCTTSHHHHHHGG-------GS-----SEEEEEESCH T ss_pred CCCC-CCCCCCCHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHH-------HC-----CEEEEEECCH T ss_conf 8987-68998699999999828----------988999499956964299999997-------38-----8479982636 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 88999999989808875334566668234754579998664189998168567653100011123442266665357777 Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674) Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674) ....+|+.|.-..+++... -.+..+|.+. .+++.+||+|++||||-.. . T Consensus 85 ~~i~~a~~n~~~~~l~~~~-----i~~~~~D~~~--~~~~~~fD~Ii~~~~~~~~--~---------------------- 133 (194) T 1dus_A 85 RAIKLAKENIKLNNLDNYD-----IRVVHSDLYE--NVKDRKYNKIITNPPIRAG--K---------------------- 133 (194) T ss_dssp HHHHHHHHHHHHTTCTTSC-----EEEEECSTTT--TCTTSCEEEEEECCCSTTC--H---------------------- T ss_pred HHHHHHHHHHHHHCCCCCE-----EEEEECCHHH--HCCCCCCCEEEECCCHHCC--C---------------------- T ss_conf 7889999999981999861-----9999873676--3356774399999522116--1---------------------- Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 477065999999999614665788079997389 Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) +-...++..+...|++ ||++.+|.+. T Consensus 134 ---~~~~~~l~~~~~~Lkp----gG~l~i~~~~ 159 (194) T 1dus_A 134 ---EVLHRIIEEGKELLKD----NGEIWVVIQT 159 (194) T ss_dssp ---HHHHHHHHHHHHHEEE----EEEEEEEEES T ss_pred ---HHHHHHHHHHHHHCCC----CCEEEEEEEC T ss_conf ---5679999999996096----9799999977 No 15 >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Probab=98.84 E-value=2.7e-08 Score=72.23 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=80.2 Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898 Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674) Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674) .-.+|+.+-+ .+....+|.|.+||+|.+...+... ++. ..+.|.|+++.....|+.|+-. T Consensus 183 ~gt~lLl~~l----------~~~~~~~VLDlGcG~G~l~~~la~~----~p~------~~v~~vD~s~~al~~ar~n~~~ 242 (343) T 2pjd_A 183 VGSQLLLSTL----------TPHTKGKVLDVGCGAGVLSVAFARH----SPK------IRLTLCDVSAPAVEASRATLAA 242 (343) T ss_dssp HHHHHHHHHS----------CTTCCSBCCBTTCTTSHHHHHHHHH----CTT------CBCEEEESBHHHHHHHHHHHHH T ss_pred HHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHH----CCC------CEEEEEECCHHHHHHHHHHHHH T ss_conf 9999999856----------5058982999325277999999997----899------7899998999999999999998 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 08875334566668234754579998664189998168567653100011123442266665357777477065999999 Q gi|254780836|r 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 (674) Q Consensus 262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh 341 (674) .|... .+..+|.++.. ..+||.|++||||-..-. +.. +--.-|+.. T Consensus 243 n~l~~--------~~~~~d~~~~~---~~~fD~Iv~NpPfh~g~~-----~~~------------------~~~~~~i~~ 288 (343) T 2pjd_A 243 NGVEG--------EVFASNVFSEV---KGRFDMIISNPPFHDGMQ-----TSL------------------DAAQTLIRG 288 (343) T ss_dssp TTCCC--------EEEECSTTTTC---CSCEEEEEECCCCCSSSH-----HHH------------------HHHHHHHHH T ss_pred CCCCE--------EEEECCCHHCC---CCCCCEEEECCCCCCCCC-----CCH------------------HHHHHHHHH T ss_conf 49937--------99964401226---655458998875011444-----688------------------999999999 Q ss_pred HHHHHCCCCCCCCEEEEECCC Q ss_conf 999614665788079997389 Q gi|254780836|r 342 LANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 342 ~i~klk~~~~~ggr~aIV~ng 362 (674) ....|++ ||++-||.|. T Consensus 289 a~~~Lkp----gG~l~iV~n~ 305 (343) T 2pjd_A 289 AVRHLNS----GGELRIVANA 305 (343) T ss_dssp HGGGEEE----EEEEEEEEET T ss_pred HHHHCCC----CCEEEEEEEC T ss_conf 9986585----8199999967 No 16 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Probab=98.79 E-value=1.3e-08 Score=74.27 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=80.8 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ...|.|.+||||.+...... .. ...++|.|+++.+.++|+-|+-..++... -.+..||...-+ T Consensus 50 ~~~vLDlG~G~G~~~l~la~---------~~--~~~v~~vDi~~~~~~~A~~N~~~n~l~~~------v~~~~~D~~~~~ 112 (259) T 3lpm_A 50 KGKIIDLCSGNGIIPLLLST---------RT--KAKIVGVEIQERLADMAKRSVAYNQLEDQ------IEIIEYDLKKIT 112 (259) T ss_dssp CCEEEETTCTTTHHHHHHHT---------TC--CCEEEEECCSHHHHHHHHHHHHHTTCTTT------EEEECSCGGGGG T ss_pred CCEEEEEECCCCHHHHHHHH---------CC--CCEEEEEECCHHHHHHHHHHHHHCCCCHH------HEEEEHHHHHHH T ss_conf 99799972585899999986---------78--98899999989999999999986073301------123300111000 Q ss_pred -CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC Q ss_conf -9866418999816856765310001112344226666535777747706599999999961466578807999738971 Q gi|254780836|r 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674) Q Consensus 286 -~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674) .++..+||+|++||||-..- ..............|+...+ +---|+......|++ ||++.++.+-.- T Consensus 113 ~~~~~~~fD~Iv~NPPy~~~~---~~~~~~~~~~~~~ar~~~~~-----~l~~~i~~a~~lLk~----~G~~~~~~~~~r 180 (259) T 3lpm_A 113 DLIPKERADIVTCNPPYFATP---DTSLKNTNEHFRIARHEVMC-----TLEDTIRVAASLLKQ----GGKANFVHRPER 180 (259) T ss_dssp GTSCTTCEEEEEECCCC--------------------------H-----HHHHHHHHHHHHEEE----EEEEEEEECTTT T ss_pred HCCCCCCCCEEEECCCCCCCC---CCCCCCCCHHHHHCCCCCCC-----CHHHHHHHHHHHCCC----CCEEEEEECHHH T ss_conf 103554254788578853687---30226823555321335544-----899999999986289----968999988899 Q ss_pred CCCCCCCCCHHHHHHHHHHCCC Q ss_conf 3477644326899999988494 Q gi|254780836|r 365 LFNGRAGSGESEIRRWLLENDL 386 (674) Q Consensus 365 LF~G~agsGEs~IRk~lie~d~ 386 (674) -.++-..+-+.++ T Consensus 181 ---------l~ei~~~~~~~gl 193 (259) T 3lpm_A 181 ---------LLDIIDIMRKYRL 193 (259) T ss_dssp ---------HHHHHHHHHHTTE T ss_pred ---------HHHHHHHHHHCCC T ss_conf ---------9999999997799 No 17 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Probab=98.74 E-value=1.1e-07 Score=68.23 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=79.1 Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898 Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674) Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674) .-.+++.+.+.. .+...+....+|.|.+||||.+.....+ .+ ..++|.|+++...++|+.|+-. T Consensus 214 ~gs~~ll~~l~~----~~~~~~~~g~~VLDlGcG~G~~~~~la~----~~--------~~v~~vD~s~~~l~~a~~~~~~ 277 (381) T 3dmg_A 214 PASLLLLEALQE----RLGPEGVRGRQVLDLGAGYGALTLPLAR----MG--------AEVVGVEDDLASVLSLQKGLEA 277 (381) T ss_dssp HHHHHHHHHHHH----HHCTTTTTTCEEEEETCTTSTTHHHHHH----TT--------CEEEEEESBHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH----HHCCCCCCCCEEEEEEEECCHHHHHHHH----CC--------CEEECCCCCHHHHHHHHHHHHH T ss_conf 899999998787----5266689999899996010488897675----19--------8874146999999999999998 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 08875334566668234754579998664189998168567653100011123442266665357777477065999999 Q gi|254780836|r 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 (674) Q Consensus 262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh 341 (674) .+.+.. +..+|... ..+...+||+|++||||-..-..+ + .+ .-.|++. T Consensus 278 ~~~~~~--------~~~~d~~~-~~~~~~~fD~Iv~n~~~h~~~~~~--------------------~--~~-~~~~l~~ 325 (381) T 3dmg_A 278 NALKAQ--------ALHSDVDE-ALTEEARFDIIVTNPPFHVGGAVI--------------------L--DV-AQAFVNV 325 (381) T ss_dssp TTCCCE--------EEECSTTT-TSCTTCCEEEEEECCCCCTTCSSC--------------------C--HH-HHHHHHH T ss_pred CCCCEE--------EEECCCCC-CCCCCCCEEEEEECCCHHHCCCCC--------------------H--HH-HHHHHHH T ss_conf 299738--------85301001-446679868999893245334368--------------------8--99-9999999 Q ss_pred HHHHHCCCCCCCCEEEEECCC Q ss_conf 999614665788079997389 Q gi|254780836|r 342 LANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 342 ~i~klk~~~~~ggr~aIV~ng 362 (674) +...||| ||++.+|.|- T Consensus 326 ~~~~Lkp----GG~l~iv~n~ 342 (381) T 3dmg_A 326 AAARLRP----GGVFFLVSNP 342 (381) T ss_dssp HHHHEEE----EEEEEEEECT T ss_pred HHHHCCC----CCEEEEEECC T ss_conf 9987584----8489999738 No 18 >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Probab=98.73 E-value=2e-08 Score=73.09 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=85.5 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) -+-||+=..++|+.+... ... ....+|.|-|||||-..+...++ +. ..++|.|++++..++|+ T Consensus 101 VLIPRpeTE~Lve~~~~~----~~~--~~~~~vlDlgtGSG~I~isla~~-----p~------~~V~avDiS~~Al~vA~ 163 (284) T 1nv8_A 101 VFVPRPETEELVELALEL----IRK--YGIKTVADIGTGSGAIGVSVAKF-----SD------AIVFATDVSSKAVEIAR 163 (284) T ss_dssp SCCCCTTHHHHHHHHHHH----HHH--HTCCEEEEESCTTSHHHHHHHHH-----SS------CEEEEEESCHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHH----HHC--CCCCEEEEEECCHHHHHHHHHHH-----HC------CCEEEECCCHHHHHHHH T ss_conf 412887589999988876----503--78867998604605988767652-----01------45167639799999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC--CCCCCHH Q ss_conf 99898088753345666682347545799986641899981685676531000111234422666653577--7747706 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g--lP~~sdg 334 (674) .|.-.+|..... .+..||-+........+||+|+|||||=.+ + ..+.. .-+|.+- |=...|| T Consensus 164 ~Na~~~~~~~~~------~~~~~d~~~~~~~~~~~fDlIVSNPPYI~~---~-~~l~~------~~~~EP~~AL~gg~dG 227 (284) T 1nv8_A 164 KNAERHGVSDRF------FVRKGEFLEPFKEKFASIEMILSNPPYVKS---S-AHLPK------DVLFEPPEALFGGEDG 227 (284) T ss_dssp HHHHHTTCTTSE------EEEESSTTGGGGGGTTTCCEEEECCCCBCG---G-GSCTT------SCCCSCHHHHBCTTTS T ss_pred HHHHHCCCCCEE------EEEECCCCCCCCCCCCCEEEEEECCCCCCC---H-HHHHH------HHHCCCHHHHHCCCCH T ss_conf 999844898629------999632100141126753089967888886---3-33223------5424863987189638 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 59999999996146657880799973 Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) +.|+..++.+. .+.||.+.+-+ T Consensus 228 -l~~~r~i~~~~---L~~~G~l~~E~ 249 (284) T 1nv8_A 228 -LDFYREFFGRY---DTSGKIVLMEI 249 (284) T ss_dssp -CHHHHHHHHHC---CCTTCEEEEEC T ss_pred -HHHHHHHHHHH---CCCCCEEEEEE T ss_conf -99999999995---66899999998 No 19 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Probab=98.70 E-value=9.6e-09 Score=75.12 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=69.9 Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999 Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674) Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674) ||..|++.+++.+.. ..+..+|.|.+||+|++.+....+ . ..++|.|+++....+|+.| T Consensus 61 tpe~ia~~ia~~~~~---------~~~~~~vlD~gcG~G~~~~~la~~--------~----~~v~~iD~s~~~i~~a~~n 119 (241) T 3gdh_A 61 TPEKIAEHIAGRVSQ---------SFKCDVVVDAFCGVGGNTIQFALT--------G----MRVIAIDIDPVKIALARNN 119 (241) T ss_dssp CCHHHHHHHHHHHHH---------HSCCSEEEETTCTTSHHHHHHHHT--------T----CEEEEEESCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH---------CCCCCEEEECCCCCCHHHHHHHHC--------C----CEEEEEECCHHHHHHHHHH T ss_conf 869999999998650---------289998999378736889999967--------9----9899998977888999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC Q ss_conf 898088753345666682347545799986641899981685676 Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~ 303 (674) +-..|+... -++..||.+.-. ...+||+|++|||++. T Consensus 120 ~~~~~~~~~------i~~~~~D~~~~~--~~~~~D~i~~~pp~~~ 156 (241) T 3gdh_A 120 AEVYGIADK------IEFICGDFLLLA--SFLKADVVFLSPPWGG 156 (241) T ss_dssp HHHTTCGGG------EEEEESCHHHHG--GGCCCSEEEECCCCSS T ss_pred HHHCCCCCC------EEEEECCHHHHH--HCCCCEEEEECCCCCC T ss_conf 998499874------399976486641--4378449998378788 No 20 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Probab=98.62 E-value=4.1e-07 Score=64.48 Aligned_cols=101 Identities=8% Similarity=-0.034 Sum_probs=67.7 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) +.||..+++-...+.... .-.+.+|.|.+||||++|+.+..+ . ...++|.|+++....+|+ T Consensus 152 ~~~~~~~~~r~~~~~~~~--------~~~g~~vldlg~g~g~~l~~~l~~------~-----~~~V~~vDi~~~~l~~a~ 212 (373) T 2qm3_A 152 YVTPETTVARVILMHTRG--------DLENKDIFVLGDDDLTSIALMLSG------L-----PKRIAVLDIDERLTKFIE 212 (373) T ss_dssp CBCHHHHHHHHHHHHHTT--------CSTTCEEEEESCTTCHHHHHHHHT------C-----CSEEEEECSCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCC--------CCCCCEEEEEECCCHHHHHHHHHC------C-----CCEEEEEECCHHHHHHHH T ss_conf 144889999999998637--------778997999979924999999976------9-----998999979799999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEECCCCCC Q ss_conf 9989808875334566668234754579-9986641899981685676 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~-d~~~~~kFD~vlaNPPFg~ 303 (674) .|.-..|++. -.+..||.... +.....+||+|++||||+. T Consensus 213 ~~a~~~g~~~-------i~~~~~d~~~~~~~~~~~~fD~v~~dpp~~~ 253 (373) T 2qm3_A 213 KAANEIGYED-------IEIFTFDLRKPLPDYALHKFDTFITDPPETL 253 (373) T ss_dssp HHHHHHTCCC-------EEEECCCTTSCCCTTTSSCBSEEEECCCSSH T ss_pred HHHHHHCCCC-------EEEEECHHHHHHHHHCCCCCCEEEECCCCCC T ss_conf 9999819974-------3998530866324540788898998999864 No 21 >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Probab=98.54 E-value=2.5e-07 Score=65.89 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=71.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH Q ss_conf 76657536817999999997317840110138776403117665404689999999998531005333225504666678 Q gi|254780836|r 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 (674) Q Consensus 171 ~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ 250 (674) +...|=|..-|+.-..+.+++ .+| .+|+|.+||||||-+.+... .+ .++.+.|+++. T Consensus 195 gqktG~flDqr~~R~~~~~~~----------~~g--~~VLDl~~g~G~~si~aa~~------ga-----~~V~~vD~s~~ 251 (396) T 2as0_A 195 GQKTGFFLDQRENRLALEKWV----------QPG--DRVLDVFTYTGGFAIHAAIA------GA-----DEVIGIDKSPR 251 (396) T ss_dssp SSSSCCCSTTHHHHHHHGGGC----------CTT--CEEEETTCTTTHHHHHHHHT------TC-----SEEEEEESCHH T ss_pred CCCCCCCHHHHHHHHHHHHHC----------CCC--CEEEEECCCCCHHHHHHHHC------CC-----CEEEEEECCHH T ss_conf 541266666788899999751----------589--76988178778889999977------99-----74688718888 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEEEECCCCCC Q ss_conf 89999999898088753345666682347545---799986641899981685676 Q gi|254780836|r 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL---~~d~~~~~kFD~vlaNPPFg~ 303 (674) ....|+-|+-+.|..... .+..+|.+ ......+.+||.|+.|||.-. T Consensus 252 al~~a~~N~~~Ngl~~~~------~~~~~D~~~~l~~~~~~~~~FD~Ii~DpP~~~ 301 (396) T 2as0_A 252 AIETAKENAKLNGVEDRM------KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFV 301 (396) T ss_dssp HHHHHHHHHHHTTCGGGE------EEEESCHHHHHHHHHHTTCCEEEEEECCCCSC T ss_pred HHHHHHHHHHHCCCCCCC------EEEECCHHHHHHHHHHHCCCCCEEEECCHHHC T ss_conf 999999999983997455------69966298887888860789987997651211 No 22 >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46 Probab=98.51 E-value=7.7e-08 Score=69.20 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=64.3 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) -.||--|-..+-+++.. .+ .+ ..+|.|++||||++-++|... +. .+.+.|+++....+|+ T Consensus 21 Rpt~~~vre~~f~~l~~----~~--~~--~~~vLDl~~G~G~~~i~a~~~--------ga----~vv~vD~~~~ai~~~~ 80 (171) T 1ws6_A 21 RPSPVRLRKALFDYLRL----RY--PR--RGRFLDPFAGSGAVGLEAASE--------GW----EAVLVEKDPEAVRLLK 80 (171) T ss_dssp CCCCHHHHHHHHHHHHH----HC--TT--CCEEEEETCSSCHHHHHHHHT--------TC----EEEEECCCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHC----CC--CC--CCEEEECCCCHHHHHHHHHHC--------CC----CCCCEECCHHHHHHHH T ss_conf 96748999999999736----45--79--798999620678999999980--------89----5300606878999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCC Q ss_conf 9989808875334566668234754---57999866418999816856765 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~ 304 (674) .|+-..|.+.. +..++. +......+.+||+|++||||+.+ T Consensus 81 ~N~~~~g~~~~--------v~~~~~d~~~~~~~~~~~~fDlI~~DPPY~~~ 123 (171) T 1ws6_A 81 ENVRRTGLGAR--------VVALPVEVFLPEAKAQGERFTVAFMAPPYAMD 123 (171) T ss_dssp HHHHHHTCCCE--------EECSCHHHHHHHHHHTTCCEEEEEECCCTTSC T ss_pred HHHHHCCCCCE--------EEEEEHHHHHHHHHHCCCCEEEEEECCCCCCC T ss_conf 87886066555--------99977898755555338855799987998867 No 23 >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Probab=98.50 E-value=3.7e-07 Score=64.74 Aligned_cols=97 Identities=8% Similarity=-0.013 Sum_probs=66.4 Q ss_pred CCCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 75368179999--9999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 175 EDFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 175 GeffTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) .-||.||-.-. .|++++ .| ..+|+|++||+|.|-+.+..+. + ...+|+.|+||.++ T Consensus 99 kvyfs~r~~~Er~ri~~~v----------~~--ge~VlDl~aG~G~~~i~~ak~~-------~---~~~V~aiDinp~av 156 (272) T 3a27_A 99 KIMWSQGNIEERKRMAFIS----------NE--NEVVVDMFAGIGYFTIPLAKYS-------K---PKLVYAIEKNPTAY 156 (272) T ss_dssp TSCCCGGGHHHHHHHHTSC----------CT--TCEEEETTCTTTTTHHHHHHHT-------C---CSEEEEEECCHHHH T ss_pred EEEECCCCHHHHHHHHHCC----------CC--CCEEEEECCCCCHHHHHHHHCC-------C---CEEEEEEECCHHHH T ss_conf 4798898779999987345----------89--9999993786588999987506-------9---50999995999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 99999989808875334566668234754579998664189998168567 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674) ..++-|+-+.|+..- -...||.-.-. ...+||.|++|||.. T Consensus 157 ~~l~~N~~~N~v~n~-------~~i~~D~r~~~--~~~~fD~Vimn~p~~ 197 (272) T 3a27_A 157 HYLCENIKLNKLNNV-------IPILADNRDVE--LKDVADRVIMGYVHK 197 (272) T ss_dssp HHHHHHHHHTTCSSE-------EEEESCGGGCC--CTTCEEEEEECCCSS T ss_pred HHHHHHHHHCCCCCE-------EEEECCCCCCC--CCCCCCEEEECCCCC T ss_conf 999999998499975-------99927765345--578888999789512 No 24 >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Lactobacillus delbrueckii subsp} Probab=98.49 E-value=7.9e-07 Score=62.63 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=63.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) -|.|-|-|-..++|...+ .+ ..+|+|..||||.+.+.+.+ . . ...++|.|+++.+.. T Consensus 41 tG~H~tT~l~l~~L~~~~----------~~--~~~VLDlGcGsG~~~~~~ak----~----g---~~~V~~iDis~~al~ 97 (205) T 3grz_A 41 TGNHQTTQLAMLGIERAM----------VK--PLTVADVGTGSGILAIAAHK----L----G---AKSVLATDISDESMT 97 (205) T ss_dssp -CCHHHHHHHHHHHHHHC----------SS--CCEEEEETCTTSHHHHHHHH----T----T---CSEEEEEESCHHHHH T ss_pred CCCCHHHHHHHHHHHHCC----------CC--CCEEEEEECCHHHHHHHHHH----C----C---CCEEEEEECCHHHHH T ss_conf 998889999999998347----------99--59999995262299999987----5----9---968999989899999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 9999989808875334566668234754579998664189998168567 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674) .|+.|.-..|+... ....++.+.. ...+||+|+||+++. T Consensus 98 ~A~~N~~~n~~~~~-------~~~~~~~~~~---~~~~fD~Ivani~~~ 136 (205) T 3grz_A 98 AAEENAALNGIYDI-------ALQKTSLLAD---VDGKFDLIVANILAE 136 (205) T ss_dssp HHHHHHHHTTCCCC-------EEEESSTTTT---CCSCEEEEEEESCHH T ss_pred HHHHHHHHCCCCCE-------EEEECCHHHC---CCCCCCEEEECCCHH T ss_conf 99999997376676-------8873434440---455568999858788 No 25 >2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46 Probab=98.46 E-value=8.6e-08 Score=68.90 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=67.8 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) +---||--|-.-+.++|-.. + ....|.|.+||||.|.++|... .+ -.+++.|+|+++..+ T Consensus 10 ~~RPt~~~vre~lfn~L~~~----~-----~g~~vLDl~~GsG~~~iea~~r------~a-----~~v~~ve~~~~a~~~ 69 (177) T 2esr_A 10 ITRPTSDKVRGAIFNMIGPY----F-----NGGRVLDLFAGSGGLAIEAVSR------GM-----SAAVLVEKNRKAQAI 69 (177) T ss_dssp --------CHHHHHHHHCSC----C-----CSCEEEEETCTTCHHHHHHHHT------TC-----CEEEEECCCHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHH----C-----CCCEEEECCEEHHHHHHHHHHC------CC-----CCCEEEECHHHHHHH T ss_conf 87868489999999987755----6-----9897999950379999999973------86-----201678342889998 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC Q ss_conf 9999898088753345666682347545799986641899981685676 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~ 303 (674) ++.|.-..+.... ..|..+|.+.--.....+||+|++||||+. T Consensus 70 ~~~n~~~~~~~~~------v~ii~~D~~~~l~~~~~~fDiI~~DPPy~~ 112 (177) T 2esr_A 70 IQDNIIMTKAENR------FTLLKMEAERAIDCLTGRFDLVFLDPPYAK 112 (177) T ss_dssp HHHHHHTTTCGGG------EEEECSCHHHHHHHBCSCEEEEEECCSSHH T ss_pred HHHHHHHHCCCCC------EEEEECCHHHHHHCCCCCCCEEEECCCCCC T ss_conf 8875765135551------024531155554313467886887997431 No 26 >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Probab=98.45 E-value=6.7e-07 Score=63.11 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=54.0 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---C Q ss_conf 6403117665404689999999998531005333225504666678899999998980887533456666823475---4 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---T 281 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~Gd---T 281 (674) ...++.|-+||||.......... + ..++.|.|+++++..+|+.|.-..+...... +..++ . T Consensus 65 ~~~~~lDiGtGsg~I~~~L~~~~----~------~~~~~~~Di~~~al~~A~~N~~~n~l~~~i~------~~~~~~~~~ 128 (254) T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL----N------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIK------VVKVPQKTL 128 (254) T ss_dssp CCCEEEEESCTTTTHHHHHHHHH----H------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE------EEECCTTCS T ss_pred CCCEEEEECCCHHHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHHHHCCCCCEE------EEECCHHHH T ss_conf 77548995678789999999977----9------9759999899999999999999838765224------565232776 Q ss_pred CCCC--CCCCCEEEEEEECCCCC Q ss_conf 5799--98664189998168567 Q gi|254780836|r 282 LSKD--LFTGKRFHYCLSNPPFG 302 (674) Q Consensus 282 L~~d--~~~~~kFD~vlaNPPFg 302 (674) +.+. .....+||+|++||||= T Consensus 129 i~~~~~~~~~~~fD~iv~NPPY~ 151 (254) T 2h00_A 129 LMDALKEESEIIYDFCMCNPPFF 151 (254) T ss_dssp STTTSTTCCSCCBSEEEECCCCC T ss_pred HHHHHHHHCCCCEEEEEECCCCC T ss_conf 76666664367654999368555 No 27 >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 2zzm_A* Probab=98.39 E-value=4.8e-07 Score=64.05 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=65.6 Q ss_pred CCCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 75368179999--9999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 175 EDFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 175 GeffTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) .-||+||..-. .|++++ .+ ..+|+|++||+|+|-+.+. . ...+++.|+||.+. T Consensus 175 ~~~f~~~~~~er~ri~~~~----------~~--~~~vlD~f~g~G~~~i~~~--------~-----~~~v~a~d~n~~a~ 229 (336) T 2yx1_A 175 KVYFSPRLGGERARIMKKV----------SL--NDVVVDMFAGVGPFSIACK--------N-----AKKIYAIDINPHAI 229 (336) T ss_dssp TSCCCGGGHHHHHHHHHHC----------CT--TCEEEETTCTTSHHHHHTT--------T-----SSEEEEEESCHHHH T ss_pred HCEECCCCHHHHHHHHHHC----------CC--CCEEEEECCCCCHHHHHCC--------C-----CCEEEEEECCHHHH T ss_conf 5662476107888766411----------78--9889996576467665313--------5-----51699997999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 99999989808875334566668234754579998664189998168567 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674) .+++-|.-+.++... -.+..||.... ..+||.|++|||++ T Consensus 230 ~~~~~N~~~N~~~~~------v~~~~~D~~~~----~~~~D~Ii~~~P~~ 269 (336) T 2yx1_A 230 ELLKKNIKLNKLEHK------IIPILSDVREV----DVKGNRVIMNLPKF 269 (336) T ss_dssp HHHHHHHHHTTCTTT------EEEEESCGGGC----CCCEEEEEECCTTT T ss_pred HHHHHHHHHHCCCCC------EEEEECCHHHC----CCCCCEEEECCHHH T ss_conf 999999998299875------89995753454----56874999658046 No 28 >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Probab=98.39 E-value=2.1e-06 Score=59.86 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=66.0 Q ss_pred CCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 5368179999--99997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 176 DFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 176 effTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) -+|.||.... .+++++ .| ..+|+|++||+|+|-+.+..+ + ...+|+.|+||.++. T Consensus 106 ~~f~~~~~~er~rl~~~~----------~~--g~~VlDl~aG~G~~~l~~a~~-----~------~~~V~avD~n~~a~~ 162 (278) T 2frn_A 106 IMFSPANVKERVRMAKVA----------KP--DELVVDMFAGIGHLSLPIAVY-----G------KAKVIAIEKDPYTFK 162 (278) T ss_dssp SCCCGGGHHHHHHHHHHC----------CT--TCEEEETTCTTTTTHHHHHHH-----T------CCEEEEECCCHHHHH T ss_pred CEECCCCHHHHHHHHHHC----------CC--CCEEEECCCCCCHHHHHHHHH-----C------CCEEEEEECCHHHHH T ss_conf 224587367999999653----------69--988999177051999999997-----4------986999979999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 9999989808875334566668234754579998664189998168567 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674) .++.|+-+.|+... -.+..||...-. ...+||.|++|+|.+ T Consensus 163 ~~~~N~~~n~~~~~------v~~~~~D~~~~~--~~~~~D~Vim~~p~~ 203 (278) T 2frn_A 163 FLVENIHLNKVEDR------MSAYNMDNRDFP--GENIADRILMGYVVR 203 (278) T ss_dssp HHHHHHHHTTCTTT------EEEECSCTTTCC--CCSCEEEEEECCCSS T ss_pred HHHHHHHHHCCCCC------EEEEECCHHHHC--CCCCCCEEEECCCCC T ss_conf 99999998099984------899968199944--666886999899852 No 29 >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Probab=98.34 E-value=4.9e-06 Score=57.46 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=74.2 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH Q ss_conf 27665753681799999999731784011013877640311766540468999999999853100533322550466667 Q gi|254780836|r 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674) Q Consensus 170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674) .+.+.|=|.--|+.-+.+..+. .| .+|+|.+||||||=+.|... .+ ..+.+.|+++ T Consensus 198 ~g~ktG~flDqR~~R~~v~~~~-----------~g--~rVLdlf~~tG~~si~Aa~~------GA-----~~V~~vD~s~ 253 (396) T 3c0k_A 198 HGHKTGYYLDQRDSRLATRRYV-----------EN--KRVLNCFSYTGGFAVSALMG------GC-----SQVVSVDTSQ 253 (396) T ss_dssp TSSTTSSCGGGHHHHHHHHHHC-----------TT--CEEEEESCTTCSHHHHHHHT------TC-----SEEEEEESCH T ss_pred CCCCCCCCHHHHHHHHHHHHHC-----------CC--CEEEECCCCCCHHHHHHHHC------CC-----CEEEEEECCH T ss_conf 4675775530689999999765-----------99--86875388668899999977------99-----7599998989 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCCC Q ss_conf 88999999989808875334566668234754579---998664189998168567 Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFG 302 (674) Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~---d~~~~~kFD~vlaNPPFg 302 (674) ...+.|+-|+-+.|.+...+ .+..+|.+.- -...+.+||.|+.+||.- T Consensus 254 ~al~~a~~N~~~Ngl~~~~~-----~~i~~d~~~~l~~~~~~~~~fD~IilDPP~f 304 (396) T 3c0k_A 254 EALDIARQNVELNKLDLSKA-----EFVRDDVFKLLRTYRDRGEKFDVIVMDPPKF 304 (396) T ss_dssp HHHHHHHHHHHHTTCCGGGE-----EEEESCHHHHHHHHHHTTCCEEEEEECCSST T ss_pred HHHHHHHHHHHHHCCCCCCC-----EEEECCHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 99999999999829984345-----7894229999999987535999899878322 No 30 >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Probab=98.25 E-value=3e-05 Score=52.30 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=88.2 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) ..+|| .+.+++++ .|| .+|+|-+||+|.+-+.+.. .+ ....+++.|+|+.....|+ T Consensus 7 ~ls~R--L~~ia~~v----------~~g--~~vlDIG~g~G~l~i~l~~----~~------~~~~viavDi~~~~l~~A~ 62 (230) T 3lec_A 7 QLSKR--LQKVANYV----------PKG--ARLLDVGSDHAYLPIFLLQ----MG------YCDFAIAGEVVNGPYQSAL 62 (230) T ss_dssp CCCHH--HHHHHTTS----------CTT--EEEEEETCSTTHHHHHHHH----TT------CEEEEEEEESSHHHHHHHH T ss_pred HHHHH--HHHHHHHC----------CCC--CEEEEECCCHHHHHHHHHH----CC------CCCEEEEEECCHHHHHHHH T ss_conf 59999--99999658----------998--9999952864999999998----39------9987999309999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH Q ss_conf 99898088753345666682347545799986641899981685676531000111234422666653577774770659 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~ 336 (674) .|.-..|.... -.++.||.|..........++++++++...-+ T Consensus 63 ~n~~~~gl~~~------I~~~~~Dgl~~~~~~e~~d~iiiag~g~~~i~------------------------------- 105 (230) T 3lec_A 63 KNVSEHGLTSK------IDVRLANGLSAFEEADNIDTITICGMGGRLIA------------------------------- 105 (230) T ss_dssp HHHHHTTCTTT------EEEEECSGGGGCCGGGCCCEEEEEEECHHHHH------------------------------- T ss_pred HHHHHCCCCCC------EEEEECCCCCCCCCCCCCEEEEECCCCHHHHH------------------------------- T ss_conf 99998399875------79998875410045554127864287588999------------------------------- Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE--EEEEECCCCCCC Q ss_conf 999999996146657880799973897134776443268999999884946--888317677655 Q gi|254780836|r 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFF 399 (674) Q Consensus 337 lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i--eaII~LP~~lFy 399 (674) -+|......++ .+|+..+-.+ ++...+|+||.+++|- +=.+....+-|| T Consensus 106 ~Il~~~~~~l~----~~~~liLqp~----------~~~~~lR~~L~~~gf~I~~E~~v~e~~~~Y 156 (230) T 3lec_A 106 DILNNDIDKLQ----HVKTLVLQPN----------NREDDLRKWLAANDFEIVAEDILTENDKRY 156 (230) T ss_dssp HHHHHTGGGGT----TCCEEEEEES----------SCHHHHHHHHHHTTEEEEEEEEEEC--CEE T ss_pred HHHHHHHHHCC----CCCEEEEECC----------CCHHHHHHHHHHCCCEEEEEEEEEECCEEE T ss_conf 99999998648----8987999708----------787999999998799776778888789878 No 31 >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46 Probab=98.25 E-value=1.2e-06 Score=61.38 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=66.4 Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999 Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) -|+--|-..+-++|- ..+ + ...|.|.+||||.+-++|..+- + -.++..|.|..+..+++. T Consensus 36 Pt~~rvrealFn~L~----~~~---~--~~~vLDLfaGsG~lgiEalsRG------a-----~~v~fVE~~~~a~~~l~~ 95 (202) T 2fpo_A 36 PTTDRVRETLFNWLA----PVI---V--DAQCLDCFAGSGALGLEALSRY------A-----AGATLIEMDRAVSQQLIK 95 (202) T ss_dssp --CHHHHHHHHHHHH----HHH---T--TCEEEETTCTTCHHHHHHHHTT------C-----SEEEEECSCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHH----HHC---C--CCEEEECCCCCCHHHHHHHCCC------C-----CEEEEEEECCCHHHHHHH T ss_conf 783899999999866----432---8--9869988878558899987079------9-----886899970333567887 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC Q ss_conf 9898088753345666682347545799986641899981685676 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~ 303 (674) |+-..+.+ ...|..+|.+.--...+.+||+|+..|||+. T Consensus 96 N~~~~~~~-------~~~ii~~d~~~~l~~~~~~fDlIflDPPY~~ 134 (202) T 2fpo_A 96 NLATLKAG-------NARVVNSNAMSFLAQKGTPHNIVFVDPPFRR 134 (202) T ss_dssp HHHHTTCC-------SEEEECSCHHHHHSSCCCCEEEEEECCSSST T ss_pred HHHHHCCC-------CCEEEECCHHHHHHHCCCCCCEEEECCCCCC T ss_conf 89874635-------5359953245655412776668997699875 No 32 >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Probab=98.24 E-value=9.1e-06 Score=55.68 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=92.7 Q ss_pred CCCCC--CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH Q ss_conf 57536--8179999999973178401101387764031176654046899999999985310053332255046666788 Q gi|254780836|r 174 AEDFM--TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 (674) Q Consensus 174 aGeff--TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t 251 (674) -+..| |+.++.-++...+ .|++..+|+|-.||||++...+.. . ..+++|.|++++. T Consensus 10 ~~~~~~~t~~e~~a~il~~l----------~~~~g~~VLDiGcG~G~~s~~la~-------~-----~~~V~avD~~~~~ 67 (192) T 1l3i_A 10 NPSVPGPTAMEVRCLIMCLA----------EPGKNDVAVDVGCGTGGVTLELAG-------R-----VRRVYAIDRNPEA 67 (192) T ss_dssp CTTSCCCCCHHHHHHHHHHH----------CCCTTCEEEEESCTTSHHHHHHHT-------T-----SSEEEEEESCHHH T ss_pred CCCCCCCCHHHHHHHHHHHC----------CCCCCCEEEEEECCHHHHHHHHHH-------C-----CCEEEEEECCCHH T ss_conf 79989978699999999866----------999979999983870499999984-------3-----9999999906288 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 99999998980887533456666823475457999866418999816856765310001112344226666535777747 Q gi|254780836|r 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 (674) Q Consensus 252 yaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~ 331 (674) .++|+.|+--.|...+ -.+..||.... ......||.|+++...+. | T Consensus 68 ~~~a~~~~~~~gl~~~------v~~~~gd~~~~-~~~~~~~D~v~~~~~~~~-~-------------------------- 113 (192) T 1l3i_A 68 ISTTEMNLQRHGLGDN------VTLMEGDAPEA-LCKIPDIDIAVVGGSGGE-L-------------------------- 113 (192) T ss_dssp HHHHHHHHHHTTCCTT------EEEEESCHHHH-HTTSCCEEEEEESCCTTC-H-------------------------- T ss_pred HHHHHHHHHHCCCCCC------EEEEECCHHHC-CCCCCCCCEEEEECCHHH-H-------------------------- T ss_conf 9999999998099988------89998862105-300088688999180346-9-------------------------- Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 7065999999999614665788079997389713477644326899999988494 Q gi|254780836|r 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 (674) Q Consensus 332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ 386 (674) --++++....|+| |||+.+.. ++. .....+++++-+.++ T Consensus 114 ----~~~l~~~~~~Lkp----GG~lv~~~---~~~-----e~~~~~~~~~~~~g~ 152 (192) T 1l3i_A 114 ----QEILRIIKDKLKP----GGRIIVTA---ILL-----ETKFEAMECLRDLGF 152 (192) T ss_dssp ----HHHHHHHHHTEEE----EEEEEEEE---CBH-----HHHHHHHHHHHHTTC T ss_pred ----HHHHHHHHHHCCC----CCEEEEEE---ECC-----CCHHHHHHHHHHCCC T ss_conf ----9999999996799----98899997---230-----659999999997799 No 33 >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15} Probab=98.22 E-value=5.2e-05 Score=50.76 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=92.3 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) ..+.-.|+++|--++..-| .+.+..+|+|-.||||.+-+.+.. ..+ ...++|.|++++.. T Consensus 18 ~~~~~~tk~evra~~l~~L----------~l~pg~~VLDiG~GsG~la~~~a~----~~~------~~~V~aiD~~~~~~ 77 (204) T 3e05_A 18 TAKKLITKQEVRAVTLSKL----------RLQDDLVMWDIGAGSASVSIEASN----LMP------NGRIFALERNPQYL 77 (204) T ss_dssp CCTTTSCCHHHHHHHHHHT----------TCCTTCEEEEETCTTCHHHHHHHH----HCT------TSEEEEEECCHHHH T ss_pred CCCCCCCHHHHHHHHHHHC----------CCCCCCEEEEEEEEHHHHHHHHHH----HCC------CCEEEEEECCHHHH T ss_conf 3997866899999999860----------999939999983107899999999----789------96799994999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674) +.++.|+--.|...- .+..|+... .......||.|+.+.+.+.- T Consensus 78 ~~a~~n~~~~g~~~~-------~~~~g~~~~-~~~~~~~~D~i~i~~~~~~~---------------------------- 121 (204) T 3e05_A 78 GFIRDNLKKFVARNV-------TLVEAFAPE-GLDDLPDPDRVFIGGSGGML---------------------------- 121 (204) T ss_dssp HHHHHHHHHHTCTTE-------EEEECCTTT-TCTTSCCCSEEEESCCTTCH---------------------------- T ss_pred HHHHHHHHHCCCCEE-------EEEECCCCC-CCCCCCCCCEEEECCCCCCH---------------------------- T ss_conf 999999998199858-------997345323-45435787699990655235---------------------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 06599999999961466578807999738971347764432689999998849468883 Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 (674) Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII 391 (674) -.++.++...|+| |||+++... .+ .+...+++++=+.++.--++ T Consensus 122 ---~~~l~~~~~~L~p----GG~lvi~~~--~~------e~~~~~~~~l~~~g~~~e~~ 165 (204) T 3e05_A 122 ---EEIIDAVDRRLKS----EGVIVLNAV--TL------DTLTKAVEFLEDHGYMVEVA 165 (204) T ss_dssp ---HHHHHHHHHHCCT----TCEEEEEEC--BH------HHHHHHHHHHHHTTCEEEEE T ss_pred ---HHHHHHHHHHCCC----CCEEEEEEE--CH------HHHHHHHHHHHHCCCCEEEE T ss_conf ---8999999985489----989999963--48------78999999999779938999 No 34 >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Probab=98.22 E-value=8.2e-05 Score=49.48 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=74.4 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) +.+|.|-+||||++.....+++. ....++|.|+++....+|+.|.-..|..... .+..+|.-.-+ T Consensus 23 G~~VLDlGcG~G~~t~~la~~~~---------~~~~V~giDis~~~l~~ar~~~~~~g~~~~v------~~~~~d~~~~~ 87 (197) T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVG---------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRV------TLIKDGHQNMD 87 (197) T ss_dssp TCEEEESCCTTSHHHHHHHHHHC---------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGE------EEECSCGGGGG T ss_pred CCEEEEEEEECCHHHHHHHHHHC---------CCEEEEEEECCHHHHHHHHHHHHHCCCCCCE------EEEECCHHHHH T ss_conf 99999992048899999999838---------9819999973889989999999983998778------99985867601 Q ss_pred CCCCCEEEEEEECCCCCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 9866418999816856765-31000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~-Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) .+....+|.+..++||-.. ++.. .....-...+++.+...|++ ||+++++. T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~lkp----gG~l~~~~ 139 (197) T 3eey_A 88 KYIDCPVKAVMFNLGYLPSGDHSI--------------------STRPETTIQALSKAMELLVT----GGIITVVI 139 (197) T ss_dssp GTCCSCEEEEEEEESBCTTSCTTC--------------------BCCHHHHHHHHHHHHHHEEE----EEEEEEEE T ss_pred HCCCCCCCEEEEEEEECCCCCHHH--------------------CCCHHHHHHHHHHHHHHHCC----CCEEEEEE T ss_conf 215776430465255325440220--------------------16857799999999997289----97899999 No 35 >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Probab=98.21 E-value=5.2e-06 Score=57.28 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=64.8 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH Q ss_conf 76657536817999999997317840110138776403117665404689999999998531005333225504666678 Q gi|254780836|r 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 (674) Q Consensus 171 ~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ 250 (674) +...|-|.--|+ .++.+.. ....+|+|.|||||||-+.+... . -.++|.|+++. T Consensus 189 g~ktG~flDqr~-~r~~~~~-------------~~g~~VLDl~~g~G~~s~~~a~~-------~-----~~V~~vD~s~~ 242 (382) T 1wxx_A 189 GQKTGAYLDQRE-NRLYMER-------------FRGERALDVFSYAGGFALHLALG-------F-----REVVAVDSSAE 242 (382) T ss_dssp TSCCCCCGGGHH-HHHHGGG-------------CCEEEEEEETCTTTHHHHHHHHH-------E-----EEEEEEESCHH T ss_pred CCCCCCHHHHHH-HHHHHHH-------------HCCCEEEECCCCCCHHHHHHHHC-------C-----CCEEECCCCHH T ss_conf 355672156666-5889876-------------26980410467787799999846-------7-----72672046399 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEECCCCCC Q ss_conf 899999998980887533456666823475457---99986641899981685676 Q gi|254780836|r 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~---~d~~~~~kFD~vlaNPPFg~ 303 (674) ....|+.|+-+.|++. .....||.+. .-...+.+||.|+.+||... T Consensus 243 al~~a~~n~~~ng~~~-------~~~~~~D~~~~l~~~~~~~~~fD~VilDpP~~~ 291 (382) T 1wxx_A 243 ALRRAEENARLNGLGN-------VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFA 291 (382) T ss_dssp HHHHHHHHHHHTTCTT-------EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC T ss_pred HHHHHHHHHHHCCCCC-------CEEEECCHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 9999999999728688-------667860177777777862679986998272115 No 36 >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Probab=98.21 E-value=6.9e-05 Score=49.94 Aligned_cols=170 Identities=14% Similarity=0.114 Sum_probs=94.7 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH Q ss_conf 76657536817999999997317840110138776403117665404689999999998531005333225504666678 Q gi|254780836|r 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 (674) Q Consensus 171 ~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ 250 (674) |.+-|. -|-+++..++...| .|.+..+|.|-.||||++-+.+... . ....++|.|+++. T Consensus 2 ~~~~g~-~tk~e~ra~~l~~L----------~~~pg~~vLDiGcG~G~~a~~~a~~----~------~~~~V~avD~~~~ 60 (178) T 3hm2_A 2 NATDGQ-LTKQHVRALAISAL----------APKPHETLWDIGGGSGSIAIEWLRS----T------PQTTAVCFEISEE 60 (178) T ss_dssp ----CC-SHHHHHHHHHHHHH----------CCCTTEEEEEESTTTTHHHHHHHTT----S------SSEEEEEECSCHH T ss_pred CCCCCC-CCHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHH----C------CCCEEEEEECCHH T ss_conf 887776-55899999999855----------9999799999766888899999996----8------9776988508999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 89999999898088753345666682347545799986641899981685676531000111234422666653577774 Q gi|254780836|r 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 (674) Q Consensus 251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~ 330 (674) ..+.++.|.--.+... -.+..||-..........||.++..++-. +| T Consensus 61 ~~~~a~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------------------------~~- 107 (178) T 3hm2_A 61 RRERILSNAINLGVSD-------RIAVQQGAPRAFDDVPDNPDVIFIGGGLT-------------------------AP- 107 (178) T ss_dssp HHHHHHHHHHTTTCTT-------SEEEECCTTGGGGGCCSCCSEEEECC-TT-------------------------CT- T ss_pred HHHHHHHHHHHHCCCC-------EEEEEECCCHHCCCCCCCCCEEEECCCCC-------------------------HH- T ss_conf 9999999999819997-------89999436200224678888999927335-------------------------79- Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC--EEEEEE--CCCCCC--CCCCCC Q ss_conf 77065999999999614665788079997389713477644326899999988494--688831--767765--578861 Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVA--LPTDLF--FRTNIA 404 (674) Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~--ieaII~--LP~~lF--ynTgI~ 404 (674) .+|+.+...|+| |||+++... +-+ ++..+++++-+.++ +..-++ .|-.-+ +...=| T Consensus 108 ------~~l~~~~~~Lkp----GG~lvi~~~-----~~e---~~~~~~~~~~~~g~~l~~~~v~r~~~~g~~~~~~~~~P 169 (178) T 3hm2_A 108 ------GVFAAAWKRLPV----GGRLVANAV-----TVE---SEQMLWALRKQFGGTISSFAISHEHTVGSFITMKPALP 169 (178) T ss_dssp ------THHHHHHHTCCT----TCEEEEEEC-----SHH---HHHHHHHHHHHHCCEEEEEEEEEEEECSSCEEEEECCC T ss_pred ------HHHHHHHHHCCC----CEEEEEEEC-----CHH---HHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCC T ss_conf ------999999984799----839999805-----886---89999999997499899999887478056451347899 Q ss_pred EEEEEEEC Q ss_conf 69999946 Q gi|254780836|r 405 TYLWILSN 412 (674) Q Consensus 405 t~Iwil~k 412 (674) .+||...| T Consensus 170 v~~~~~~k 177 (178) T 3hm2_A 170 VHQWTVVK 177 (178) T ss_dssp EEEEEEEC T ss_pred EEEEEEEE T ss_conf 89999997 No 37 >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46 Probab=98.20 E-value=1.6e-06 Score=60.66 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=66.7 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) --|+--|-.-|-++|-.. .+ ...|+|.+||||++-++|... .+ -++++.|.|+.+..+++ T Consensus 25 RPt~~~vrealfn~l~~~-------~~--~~~vLDlf~GsG~~~~ea~sr------Ga-----~~v~~Ve~~~~~~~~~~ 84 (187) T 2fhp_A 25 RPTTDKVKESIFNMIGPY-------FD--GGMALDLYSGSGGLAIEAVSR------GM-----DKSICIEKNFAALKVIK 84 (187) T ss_dssp CCCCHHHHHHHHHHHCSC-------CS--SCEEEETTCTTCHHHHHHHHT------TC-----SEEEEEESCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH-------CC--CCEEEECCCCCCHHHHHHHHC------CC-----CEEEEEEECHHHHHHHH T ss_conf 878189999999986511-------59--998999888737899999975------88-----83589994246776766 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCCCC Q ss_conf 9989808875334566668234754579---9986641899981685676 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~---d~~~~~kFD~vlaNPPFg~ 303 (674) .|+-..+.... ..+..+|.+.- -.-.+.+||+|+.+|||+. T Consensus 85 ~N~~~~~~~~~------~~i~~~d~~~~l~~~~~~~~~fDlIflDPPY~~ 128 (187) T 2fhp_A 85 ENIAITKEPEK------FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK 128 (187) T ss_dssp HHHHHHTCGGG------EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG T ss_pred HHHHHCCCCCC------CEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCC T ss_conf 55542024564------178861078887764302676535997898753 No 38 >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} Probab=98.19 E-value=5.5e-05 Score=50.57 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=89.2 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) +..+|.|-+||||++..... . . ...+||.|++++..++|+.|+--.|++.- .+..++.-.- T Consensus 22 ~~~~VLD~gcG~G~~t~~LA----~---~-----~~~V~aiDis~~al~~a~~n~~~~~l~nv-------~~~~~~~~~l 82 (185) T 3mti_A 22 DESIVVDATMGNGNDTAFLA----G---L-----SKKVYAFDVQEQALGKTSQRLSDLGIENT-------ELILDGHENL 82 (185) T ss_dssp TTCEEEESCCTTSHHHHHHH----T---T-----SSEEEEEESCHHHHHHHHHHHHHHTCCCE-------EEEESCGGGG T ss_pred CCCEEEEEEEECCHHHHHHH----H---C-----CCEEEECCCCHHHHHHHHHHHHHCCCCCE-------EEEECCHHHH T ss_conf 99999999638889999998----2---6-----99899758987888789999998299848-------9999367775 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC Q ss_conf 99866418999816856765310001112344226666535777747706599999999961466578807999738971 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674) +......||.++.|+|+-.. .+..... .....+..|+.+...|++ ||++.++..- T Consensus 83 ~~~~~~~~~~v~~~~~~~~~--~~~~~~~-----------------~~~~~~~~L~~~~~~Lkp----gG~l~i~~~~-- 137 (185) T 3mti_A 83 DHYVREPIRAAIFNLGYLPS--ADKSVIT-----------------KPHTTLEAIEKILDRLEV----GGRLAIMIYY-- 137 (185) T ss_dssp GGTCCSCEEEEEEEEC------------------------------CHHHHHHHHHHHHHHEEE----EEEEEEEEC--- T ss_pred HHHCCCCCCEEEEECCCCCC--CCCCCCC-----------------CHHHHHHHHHHHHHHHCC----CCEEEEEEEC-- T ss_conf 55135666569995265677--8731135-----------------607789999999998389----9889999937-- Q ss_pred CCCCCCCCCHH-HHHHHHHH--CCCEEEEEECCCCCCCC-CCCCEEEEEEECC Q ss_conf 34776443268-99999988--49468883176776557-8861699999468 Q gi|254780836|r 365 LFNGRAGSGES-EIRRWLLE--NDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 (674) Q Consensus 365 LF~G~agsGEs-~IRk~lie--~d~ieaII~LP~~lFyn-TgI~t~Iwil~k~ 413 (674) -+ ..|..|. .|++|+-+ ..-.+ |+.. -|+| ..-|.+++++.|- T Consensus 138 ~~--~~~~~e~~~i~~~l~~l~~~~f~-v~~~---~~~n~~~~~p~lv~~~k~ 184 (185) T 3mti_A 138 GH--DGGDMEKDAVLEYVIGLDQRVFT-AMLY---QPLNQINTPPFLVMLEKL 184 (185) T ss_dssp -------CHHHHHHHHHHHHSCTTTEE-EEEE---EESSCSSCCCEEEEEEEC T ss_pred CC--CCCHHHHHHHHHHHHHCCCCCEE-EEEE---EECCCCCCCCEEEEEEEC T ss_conf 99--98789999999999857958639-9999---852688999789999976 No 39 >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI- 2, protein structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Probab=98.17 E-value=4.4e-06 Score=57.76 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=74.2 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH Q ss_conf 27665753681799999999731784011013877640311766540468999999999853100533322550466667 Q gi|254780836|r 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674) Q Consensus 170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674) .+.+-|=|+.-|+.-+.+.+++- ......+|.|-+||||||-+.|... .+ .+.+.|.++ T Consensus 127 ~g~ktG~FlDqr~nr~~l~~~~~---------~~~kg~rVLdlF~ytG~~sl~aa~~------GA------~V~~VD~s~ 185 (332) T 2igt_A 127 AFRHVGVFPEQIVHWEWLKNAVE---------TADRPLKVLNLFGYTGVASLVAAAA------GA------EVTHVDASK 185 (332) T ss_dssp SSSCCSCCGGGHHHHHHHHHHHH---------HSSSCCEEEEETCTTCHHHHHHHHT------TC------EEEEECSCH T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---------HCCCCCEEEECCCCCCHHHHHHHHC------CC------EEEEEECCH T ss_conf 78756345210668999999866---------3158975887267777789999978------98------499993879 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEECCC-CC Q ss_conf 8899999998980887533456666823475457---99986641899981685-67 Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPP-FG 302 (674) Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~---~d~~~~~kFD~vlaNPP-Fg 302 (674) ...+.|+.|+-+.|.+.... ....+|.+. .-...+.+||+|+.+|| |+ T Consensus 186 ~al~~a~~N~~lNg~~~~~~-----~~i~~Da~~~l~~~~~~g~~fD~IilDPP~f~ 237 (332) T 2igt_A 186 KAIGWAKENQVLAGLEQAPI-----RWICEDAMKFIQREERRGSTYDIILTDPPKFG 237 (332) T ss_dssp HHHHHHHHHHHHHTCTTSCE-----EEECSCHHHHHHHHHHHTCCBSEEEECCCSEE T ss_pred HHHHHHHHHHHHHCCCCCCE-----EEEECCHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 99999999999848988858-----99926799999999971899768997896446 No 40 >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 Probab=98.15 E-value=1.6e-05 Score=54.11 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=69.9 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH Q ss_conf 27665753681799999999731784011013877640311766540468999999999853100533322550466667 Q gi|254780836|r 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674) Q Consensus 170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674) .+.+.|=|.--|+.-+-++..+ .+| .+|+|.+||||||=+.|... .+ ..+.+.|+++ T Consensus 189 ~gqkTG~flDqR~nR~~l~~~~----------~~g--~rVLDlfs~tGgfsl~aa~~------gA-----~~V~~vD~s~ 245 (385) T 2b78_A 189 DGLMTGIFLDQRQVRNELINGS----------AAG--KTVLNLFSYTAAFSVAAAMG------GA-----MATTSVDLAK 245 (385) T ss_dssp SSSCCSSCGGGHHHHHHHHHTT----------TBT--CEEEEETCTTTHHHHHHHHT------TB-----SEEEEEESCT T ss_pred HCCCCCCCHHHHHHHHHHHHHH----------CCC--CCEEEECCCCCHHHHHHHHC------CC-----CEEEECCCCH T ss_conf 3255688777888799999985----------599--91686367687899999877------99-----5888526769 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEECCCC Q ss_conf 8899999998980887533456666823475457---999866418999816856 Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~---~d~~~~~kFD~vlaNPPF 301 (674) ...++|+.|+-+.|++...+ .+..+|.+. .-...+.+||.|+.+||- T Consensus 246 ~a~~~a~~N~~~N~l~~~~~-----~~~~~D~~~~L~~~~~~~~~fD~IilDPP~ 295 (385) T 2b78_A 246 RSRALSLAHFEANHLDMANH-----QLVVMDVFDYFKYARRHHLTYDIIIIDPPS 295 (385) T ss_dssp THHHHHHHHHHHTTCCCTTE-----EEEESCHHHHHHHHHHTTCCEEEEEECCCC T ss_pred HHHHHHHHHHHHHCCCCCCE-----EEEECCHHHHHHHHHHCCCCCCEEEECCCC T ss_conf 99999999899848997644-----777266999999998648988889989863 No 41 >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Probab=98.08 E-value=4.8e-05 Score=50.95 Aligned_cols=122 Identities=12% Similarity=0.087 Sum_probs=80.0 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) .|---|.++.-+ +.++ +..++..|.|-+||||++-......+. + ...+||.|++++...+ T Consensus 74 ~qiiyp~d~~~I-i~~l----------~i~pG~rVLd~G~GsG~lt~~lar~~~---~------~G~V~~~D~~~~~~~~ 133 (255) T 3mb5_A 74 PQIVHPKDAALI-VAYA----------GISPGDFIVEAGVGSGALTLFLANIVG---P------EGRVVSYEIREDFAKL 133 (255) T ss_dssp SCCCCHHHHHHH-HHHT----------TCCTTCEEEEECCTTSHHHHHHHHHHC---T------TSEEEEECSCHHHHHH T ss_pred CCCCCHHHHHHH-HHHH----------CCCCCCEEEECCCCCHHHHHHHHHHCC---C------CCEEEEECCCHHHHHH T ss_conf 746588999999-9971----------989899899888662799999997438---8------9779983499999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH Q ss_conf 99998980887533456666823475457999866418999816856765310001112344226666535777747706 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674) |+.|+-..|.... -.+..+|... .+....||.|+.++|= +| T Consensus 134 A~~n~~~~gl~~~------v~~~~~D~~~--~~~~~~~D~V~ld~p~--p~----------------------------- 174 (255) T 3mb5_A 134 AWENIKWAGFDDR------VTIKLKDIYE--GIEEENVDHVILDLPQ--PE----------------------------- 174 (255) T ss_dssp HHHHHHHHTCTTT------EEEECSCGGG--CCCCCSEEEEEECSSC--GG----------------------------- T ss_pred HHHHHHHCCCCEE------EEEEECCHHC--CCCCCCCCEEEEECCC--HH----------------------------- T ss_conf 9999997199814------9999461103--5555656579996685--67----------------------------- Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 599999999961466578807999738 Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) ..+-|+...||| ||++++..| T Consensus 175 --~~l~~~~~~Lkp----GG~lv~~~p 195 (255) T 3mb5_A 175 --RVVEHAAKALKP----GGFFVAYTP 195 (255) T ss_dssp --GGHHHHHHHEEE----EEEEEEEES T ss_pred --HHHHHHHHHCCC----CCEEEEEEC T ss_conf --899999985689----988999939 No 42 >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Probab=98.03 E-value=6.6e-05 Score=50.10 Aligned_cols=120 Identities=12% Similarity=0.093 Sum_probs=75.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-+||+|-+-+.+.+ .+ ...+++|.|+++.....|+.|+-..|+... -.+..||-+.... T Consensus 17 ~~ilDiG~g~G~~~~~l~~----~~------~~~~v~avDi~~~~l~~a~~n~~~~~l~~~------i~~~~~D~~~~~~ 80 (225) T 3kr9_A 17 AILLDVGSDHAYLPIELVE----RG------QIKSAIAGEVVEGPYQSAVKNVEAHGLKEK------IQVRLANGLAAFE 80 (225) T ss_dssp EEEEEETCSTTHHHHHHHH----TT------SEEEEEEEESSHHHHHHHHHHHHHTTCTTT------EEEEECSGGGGCC T ss_pred CEEEEECCCHHHHHHHHHH----CC------CCCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEEEECCCCHHHH T ss_conf 9899961856999999998----09------998899710999999999999998299987------7999887413220 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973897134 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674) ....||.++..++.+- .+..+++........+|+..+..+ T Consensus 81 -~~~~~d~iviag~g~~----------------------------------~i~~il~~~~~~l~~~g~liL~p~----- 120 (225) T 3kr9_A 81 -ETDQVSVITIAGMGGR----------------------------------LIARILEEGLGKLANVERLILQPN----- 120 (225) T ss_dssp -GGGCCCEEEEEEECHH----------------------------------HHHHHHHHTGGGCTTCCEEEEEES----- T ss_pred -CCCCCCHHHCCCCCHH----------------------------------HHHHHHHHHHHHCCCCCEEEEECC----- T ss_conf -3466772105387789----------------------------------999999988997188998999779----- Q ss_pred CCCCCCCHHHHHHHHHHCCCE Q ss_conf 776443268999999884946 Q gi|254780836|r 367 NGRAGSGESEIRRWLLENDLI 387 (674) Q Consensus 367 ~G~agsGEs~IRk~lie~d~i 387 (674) +....+|+||.++++- T Consensus 121 -----~~~~~lR~~L~~~g~~ 136 (225) T 3kr9_A 121 -----NREDDLRIWLQDHGFQ 136 (225) T ss_dssp -----SCHHHHHHHHHHTTEE T ss_pred -----CCHHHHHHHHHHCCCE T ss_conf -----8879999999988995 No 43 >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Probab=98.01 E-value=8.5e-05 Score=49.36 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=78.7 Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH Q ss_conf 53681799999999731784011013877640311766540468999999999853100533322550466667889999 Q gi|254780836|r 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674) Q Consensus 176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674) -.|+| +.+.+++++. +++..+|.|-+||||.+.....++. . ...+++|.|+++...+.+ T Consensus 19 p~y~~-~~~~~l~~~~-----------~~~~~~VLDiGCGtG~~t~~la~~~---~------~~~~V~gvD~S~~mi~~a 77 (299) T 3g5t_A 19 PSYPS-DFYKMIDEYH-----------DGERKLLVDVGCGPGTATLQMAQEL---K------PFEQIIGSDLSATMIKTA 77 (299) T ss_dssp CCCCH-HHHHHHHHHC-----------CSCCSEEEEETCTTTHHHHHHHHHS---S------CCSEEEEEESCHHHHHHH T ss_pred CCCHH-HHHHHHHHCC-----------CCCCCEEEEECCCCCHHHHHHHHHC---C------CCCEEEEEECCHHHHHHH T ss_conf 98419-9999999517-----------7899969998260889999999964---9------998799985988999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 99989808875334566668234754-----5799986641899981685676531000111234422666653577774 Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGST-----LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 (674) Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdT-----L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~ 330 (674) +...--.+..... -+...||- .....+++..||+|+++--+ .|- +. T Consensus 78 ~~~~~~~~~~~~~-----v~~~~~dae~~~~~~~~~~~~~~fD~V~~~~~~--h~~-d~--------------------- 128 (299) T 3g5t_A 78 EVIKEGSPDTYKN-----VSFKISSSDDFKFLGADSVDKQKIDMITAVECA--HWF-DF--------------------- 128 (299) T ss_dssp HHHHHHCC-CCTT-----EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCG--GGS-CH--------------------- T ss_pred HHHHHHCCCCCCE-----EEEEEECHHHCCCCCCCCCCCCCCCEEEEECCE--ECC-CH--------------------- T ss_conf 9999863667532-----468983377654421234665565478870036--315-61--------------------- Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 770659999999996146657880799973 Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) -.+++.+-..||| ||++++.. T Consensus 129 -----~~~l~e~~r~Lkp----gG~l~i~~ 149 (299) T 3g5t_A 129 -----EKFQRSAYANLRK----DGTIAIWG 149 (299) T ss_dssp -----HHHHHHHHHHEEE----EEEEEEEE T ss_pred -----HHHHHHHHHHHHC----CCEEEEEE T ss_conf -----7899999999523----99899997 No 44 >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Probab=98.01 E-value=7.5e-06 Score=56.25 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=88.7 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) -|.|-|-|-.+++|.+.+ .|| .+|.|..||||-+.+.+.+ . + ..++|.|+++.... T Consensus 101 TG~H~TT~l~l~~l~~~~----------~~g--~~VLDvGcGsGiLsi~aak----~----G----~~V~aiDid~~av~ 156 (254) T 2nxc_A 101 TGHHETTRLALKALARHL----------RPG--DKVLDLGTGSGVLAIAAEK----L----G----GKALGVDIDPMVLP 156 (254) T ss_dssp -CCSHHHHHHHHHHHHHC----------CTT--CEEEEETCTTSHHHHHHHH----T----T----CEEEEEESCGGGHH T ss_pred CCCCHHHHHHHHHHHHHC----------CCC--CEEEEECCCCCHHHHHHHH----C----C----CEEEEEECCHHHHH T ss_conf 999889999999998417----------997--9899971777888999984----5----9----98999988727889 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH Q ss_conf 99999898088753345666682347545799986641899981685676531000111234422666653577774770 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd 333 (674) .|+.|.-..|++. .+..||... ..+..+||+|++|-.+.. + T Consensus 157 ~a~~N~~~N~v~~--------~~~~~~~~~--~~~~~~fDlIvaNi~~~~--------l--------------------- 197 (254) T 2nxc_A 157 QAEANAKRNGVRP--------RFLEGSLEA--ALPFGPFDLLVANLYAEL--------H--------------------- 197 (254) T ss_dssp HHHHHHHHTTCCC--------EEEESCHHH--HGGGCCEEEEEEECCHHH--------H--------------------- T ss_pred HHHHHHHHHCCCE--------EEEECCHHH--CCCCCCCCEEEEEEEHHH--------H--------------------- T ss_conf 9999899709944--------999874345--164578668999810065--------6--------------------- Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 65999999999614665788079997389713477644326899999988494 Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 (674) Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ 386 (674) ..++.++...|+| ||+.. +.| .| . +-+..|++.+-+.++ T Consensus 198 --~~l~~~l~~~Lkp----gG~Li--lSG-il-~----~~~~~i~~~~~~~g~ 236 (254) T 2nxc_A 198 --AALAPRYREALVP----GGRAL--LTG-IL-K----DRAPLVREAMAGAGF 236 (254) T ss_dssp --HHHHHHHHHHEEE----EEEEE--EEE-EE-G----GGHHHHHHHHHHTTC T ss_pred --HHHHHHHHHHCCC----CCEEE--EEE-CC-H----HHHHHHHHHHHHCCC T ss_conf --8899999985688----85999--995-74-5----209999999998899 No 45 >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5} Probab=98.00 E-value=9.7e-05 Score=48.97 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=83.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH Q ss_conf 66575368179999999973178401101387764031176654046899999999985310053332255046666788 Q gi|254780836|r 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 (674) Q Consensus 172 ~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t 251 (674) +-..|---|.++..+ +..+ +-.++..|+|--||||++.....+. . ..+|+.|++++. T Consensus 69 ~r~~qiiypkD~~~I-i~~l----------~i~pG~rVLEiGtGsG~lt~~La~~----~--------g~v~t~e~~e~~ 125 (248) T 2yvl_A 69 ERKTQIIYPKDSFYI-ALKL----------NLNKEKRVLEFGTGSGALLAVLSEV----A--------GEVWTFEAVEEF 125 (248) T ss_dssp CCSSCCCCHHHHHHH-HHHT----------TCCTTCEEEEECCTTSHHHHHHHHH----S--------SEEEEECSCHHH T ss_pred CCCCCCCCHHHHHHH-HHHH----------CCCCCCEEEECCCCCHHHHHHHHHC----C--------CEEEEECCCHHH T ss_conf 888740678999999-9982----------8999997997374311999999860----7--------879998288999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 99999998980887533456666823475457999866418999816856765310001112344226666535777747 Q gi|254780836|r 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 (674) Q Consensus 252 yaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~ 331 (674) ..+|+-|+--.|...+ -.+..+| +.+-.++...||.|+.+.|- +| T Consensus 126 ~~~A~~n~~~~g~~~n------v~~~~~D-~~~~~~~~~~fD~V~ld~p~--p~-------------------------- 170 (248) T 2yvl_A 126 YKTAQKNLKKFNLGKN------VKFFNVD-FKDAEVPEGIFHAAFVDVRE--PW-------------------------- 170 (248) T ss_dssp HHHHHHHHHHTTCCTT------EEEECSC-TTTSCCCTTCBSEEEECSSC--GG-------------------------- T ss_pred HHHHHHHHHHHCCCCC------EEEEECC-HHHCCCCCCCCCEEEEECCC--HH-------------------------- T ss_conf 9999998997005770------5999912-22143245878999991787--68-------------------------- Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 706599999999961466578807999738 Q gi|254780836|r 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .++.|+...||| ||++++..| T Consensus 171 -----~~l~~~~~~LKp----GG~lv~~~P 191 (248) T 2yvl_A 171 -----HYLEKVHKSLME----GAPVGFLLP 191 (248) T ss_dssp -----GGHHHHHHHBCT----TCEEEEEES T ss_pred -----HHHHHHHHHCCC----CCEEEEEEC T ss_conf -----889999984288----978999929 No 46 >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Probab=98.00 E-value=5.9e-05 Score=50.42 Aligned_cols=143 Identities=20% Similarity=0.174 Sum_probs=89.7 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) -..|---|.++..++..+ +..++.+|+|..||||++.....+.+. + ...++|.|++++.. T Consensus 91 r~~qiiypkD~~~Ii~~l-----------di~pG~~VLDiG~GsG~lt~~lA~~v~---~------~g~V~~~D~~~~~~ 150 (277) T 1o54_A 91 RRTQIVYPKDSSFIAMML-----------DVKEGDRIIDTGVGSGAMCAVLARAVG---S------SGKVFAYEKREEFA 150 (277) T ss_dssp C-CCCCCHHHHHHHHHHT-----------TCCTTCEEEEECCTTSHHHHHHHHHTT---T------TCEEEEECCCHHHH T ss_pred CCCCCCCHHHHHHHHHHH-----------CCCCCCEEEECCCCCHHHHHHHHHHCC---C------CEEEEEEECCHHHH T ss_conf 886226889999999980-----------899999899768882799999998518---9------80999996889999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674) .+|+.|+--.|.... -.+..+|-. ..+....||.|+.+.|= .| T Consensus 151 ~~A~~n~~~~gl~~~------v~~~~~D~~--~~~~~~~~D~V~ld~p~--p~--------------------------- 193 (277) T 1o54_A 151 KLAESNLTKWGLIER------VTIKVRDIS--EGFDEKDVDALFLDVPD--PW--------------------------- 193 (277) T ss_dssp HHHHHHHHHTTCGGG------EEEECCCGG--GCCSCCSEEEEEECCSC--GG--------------------------- T ss_pred HHHHHHHHHCCCCCC------EEEEECCCC--CCCCCCCCCEEECCCCC--HH--------------------------- T ss_conf 999998997499876------799968622--44444454102217899--89--------------------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 06599999999961466578807999738971347764432689999998849468 Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674) Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674) .+|.++...||| ||++++..|- ++ + =+++-..|-+.++.+ T Consensus 194 ----~~l~~~~~~LKp----GG~lv~~~P~---i~----Q-v~~~~~~L~~~gF~~ 233 (277) T 1o54_A 194 ----NYIDKCWEALKG----GGRFATVCPT---TN----Q-VQETLKKLQELPFIR 233 (277) T ss_dssp ----GTHHHHHHHEEE----EEEEEEEESS---HH----H-HHHHHHHHHHSSEEE T ss_pred ----HHHHHHHHHCCC----CCEEEEEECC---HH----H-HHHHHHHHHHCCCEE T ss_conf ----999999973589----9899999597---89----9-999999999879816 No 47 >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A Probab=97.97 E-value=1.4e-05 Score=54.54 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=45.8 Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998 Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674) Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674) |---|||.+++. ...- .+....+ -.|+||||||+|.||+.-. +. .. ...-.++|-++|++...||..|+ T Consensus 29 P~FPVRLAsEif-qRal-~~~~~~~-p~tlwDPCCGsgYlLTvlg--LL--h~----~~l~~v~aSDVd~~al~LA~~NL 97 (250) T 1o9g_A 29 PAFPVRLATEIF-QRAL-ARLPGDG-PVTLWDPCCGSGYLLTVLG--LL--HR----RSLRQVIASDVDPAPLELAAKNL 97 (250) T ss_dssp CCCCHHHHHHHH-HHHH-HTSSCCS-CEEEEETTCTTSHHHHHHH--HH--TG----GGEEEEEEEESCHHHHHHHHHHH T ss_pred CCCCHHHHHHHH-HHHH-HHCCCCC-CCEEECCCCCCHHHHHHHH--HH--CH----HHHHHHHHCCCCHHHHHHHHHHH T ss_conf 885189999999-9999-8636888-7304305777208999998--84--30----57777773358878999988522 Q ss_pred HHH Q ss_conf 980 Q gi|254780836|r 260 LIR 262 (674) Q Consensus 260 li~ 262 (674) .|- T Consensus 98 ~LL 100 (250) T 1o9g_A 98 ALL 100 (250) T ss_dssp HTT T ss_pred HHC T ss_conf 111 No 48 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=97.88 E-value=0.00012 Score=48.41 Aligned_cols=119 Identities=17% Similarity=0.059 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998 Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674) Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674) -.+-+-||++.+ .-.+..+|.|-.||||.++.... + . . ..+.|.|+++..-+.|+.++ T Consensus 6 ~~~~~~~l~~~~----------~~~pg~rVLDiGCGtG~~~~~la----~---~-~----~~v~gvD~S~~ml~~A~~~~ 63 (239) T 1xxl_A 6 HHHSLGLMIKTA----------ECRAEHRVLDIGAGAGHTALAFS----P---Y-V----QECIGVDATKEMVEVASSFA 63 (239) T ss_dssp CHHHHHHHHHHH----------TCCTTCEEEEESCTTSHHHHHHG----G---G-S----SEEEEEESCHHHHHHHHHHH T ss_pred HHHHHHHHHHHH----------CCCCCCEEEEECCCCCHHHHHHH----H---C-C----CEEEEEECCHHHHHHHHHHH T ss_conf 165899999985----------89998989995886859999999----7---0-9----97999979999999999865 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 98088753345666682347545799986641899981685676531000111234422666653577774770659999 Q gi|254780836|r 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 (674) Q Consensus 260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl 339 (674) --.+.+. -.+..+|... -.|++.+||+|+++= ...|-.+. -.++ T Consensus 64 ~~~~~~~-------~~~~~~d~~~-l~~~d~~fD~v~~~~--~l~~~~d~--------------------------~~~l 107 (239) T 1xxl_A 64 QEKGVEN-------VRFQQGTAES-LPFPDDSFDIITCRY--AAHHFSDV--------------------------RKAV 107 (239) T ss_dssp HHHTCCS-------EEEEECBTTB-CCSCTTCEEEEEEES--CGGGCSCH--------------------------HHHH T ss_pred HHCCCCC-------CEEEECCCCC-CCCCCCCEEEEHHCC--CHHCCCCH--------------------------HHHH T ss_conf 4305654-------0001022235-688887365302045--12224689--------------------------9999 Q ss_pred HHHHHHHCCCCCCCCEEEEEC Q ss_conf 999996146657880799973 Q gi|254780836|r 340 MHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 340 qh~i~klk~~~~~ggr~aIV~ 360 (674) +++...|+| ||++++.- T Consensus 108 ~ei~r~Lkp----gG~~~~~~ 124 (239) T 1xxl_A 108 REVARVLKQ----DGRFLLVD 124 (239) T ss_dssp HHHHHHEEE----EEEEEEEE T ss_pred HHHHHHCCC----CCEEEEEE T ss_conf 999998083----82999998 No 49 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Probab=97.88 E-value=9.3e-05 Score=49.12 Aligned_cols=122 Identities=10% Similarity=0.139 Sum_probs=78.6 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) .|--.|.|+..++..+= + .| +.+|+|-.||||++-......+ ++ ...+|+.|++++...+ T Consensus 91 ~qiiypkD~~~Ii~~l~-------i--~P--G~rVLEiG~GsG~lt~~LA~~v---~~------~g~V~~vD~~e~~~~~ 150 (275) T 1yb2_A 91 TQIISEIDASYIIMRCG-------L--RP--GMDILEVGVGSGNMSSYILYAL---NG------KGTLTVVERDEDNLKK 150 (275) T ss_dssp ---------------CC-------C--CT--TCEEEEECCTTSHHHHHHHHHH---TT------SSEEEEECSCHHHHHH T ss_pred CEECCHHHHHHHHHHCC-------C--CC--CCEEEEECCCCCHHHHHHHHHC---CC------CCEEEEEECCHHHHHH T ss_conf 60147452999999719-------9--99--7989995771878999999860---89------9589999088999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH Q ss_conf 99998980887533456666823475457999866418999816856765310001112344226666535777747706 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674) |+-|+--.+...+ -.+..+|- .+.+++..||.|+.+.|- .| T Consensus 151 A~~n~~~~~~~~n------V~~~~~Di--~e~~~~~~fD~V~ld~p~--p~----------------------------- 191 (275) T 1yb2_A 151 AMDNLSEFYDIGN------VRTSRSDI--ADFISDQMYDAVIADIPD--PW----------------------------- 191 (275) T ss_dssp HHHHHHTTSCCTT------EEEECSCT--TTCCCSCCEEEEEECCSC--GG----------------------------- T ss_pred HHHHHHHHCCCCC------CHHEEHHH--HHCCCCCCCCCEEEECCC--HH----------------------------- T ss_conf 9986776315675------21110112--210244423305870568--99----------------------------- Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 599999999961466578807999738 Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .++.|+...||+ ||++++..| T Consensus 192 --~~l~~~~~~LKp----GG~lv~~~P 212 (275) T 1yb2_A 192 --NHVQKIASMMKP----GSVATFYLP 212 (275) T ss_dssp --GSHHHHHHTEEE----EEEEEEEES T ss_pred --HHHHHHHHHCCC----CCEEEEEEC T ss_conf --999999975688----828999989 No 50 >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27} Probab=97.80 E-value=0.00028 Score=46.02 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=90.8 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) -..|---|.++..++..+= + .|| .+|+|.-||||++-....+.+.. ...++|.|++++.. T Consensus 75 r~~qiiyp~d~~~Ii~~l~-------i--~pG--~~VLEiG~GsG~lt~~lA~~v~~---------~g~V~~~d~~~~~~ 134 (258) T 2pwy_A 75 RSATPTYPKDASAMVTLLD-------L--APG--MRVLEAGTGSGGLTLFLARAVGE---------KGLVESYEARPHHL 134 (258) T ss_dssp CSSCCCCHHHHHHHHHHTT-------C--CTT--CEEEEECCTTSHHHHHHHHHHCT---------TSEEEEEESCHHHH T ss_pred CCCCCCCHHHHHHHHHHCC-------C--CCC--CEEEECCCCHHHHHHHHHHHCCC---------CCEEEEEECCHHHH T ss_conf 9876747799999999719-------8--999--99998777067999999997288---------73899984899999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674) .+|+.|+--.+...+ -.+..|| +.+..+....||.|+...|= .| T Consensus 135 ~~A~~n~~~~~~~~~------v~~~~~d-~~~~~~~~~~~d~v~ld~p~--p~--------------------------- 178 (258) T 2pwy_A 135 AQAERNVRAFWQVEN------VRFHLGK-LEEAELEEAAYDGVALDLME--PW--------------------------- 178 (258) T ss_dssp HHHHHHHHHHCCCCC------EEEEESC-GGGCCCCTTCEEEEEEESSC--GG--------------------------- T ss_pred HHHHHHHHHCCCCCC------EEEEECC-HHHCCCCCCCCCEEEECCCC--HH--------------------------- T ss_conf 999999998089985------5688365-78855556432389964889--99--------------------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 06599999999961466578807999738971347764432689999998849468 Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674) Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674) .++.|+...||| ||++++..|.- + + -.++.+.+-+.++.+ T Consensus 179 ----~~l~~~~~~LKp----GG~lv~~~p~~---~----Q-~~~~~~~l~~~gf~~ 218 (258) T 2pwy_A 179 ----KVLEKAALALKP----DRFLVAYLPNI---T----Q-VLELVRAAEAHPFRL 218 (258) T ss_dssp ----GGHHHHHHHEEE----EEEEEEEESCH---H----H-HHHHHHHHTTTTEEE T ss_pred ----HHHHHHHHHCCC----CCEEEEEECCH---H----H-HHHHHHHHHHCCCEE T ss_conf ----999999986678----95999993988---9----9-999999999889837 No 51 >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Probab=97.69 E-value=0.00018 Score=47.26 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=66.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|-+||+||.|....+ . + ...++|.|+++.....|+...--.+.... .....+|....+. T Consensus 66 ~~VLDlGCG~G~~~~~~~~----~----~---~~~v~GiD~S~~~l~~a~~r~~~~~~~~~------~~f~~~d~~~~~~ 128 (298) T 1ri5_A 66 DSVLDLGCGKGGDLLKYER----A----G---IGEYYGVDIAEVSINDARVRARNMKRRFK------VFFRAQDSYGRHM 128 (298) T ss_dssp CEEEEETCTTTTTHHHHHH----H----T---CSEEEEEESCHHHHHHHHHHHHTSCCSSE------EEEEESCTTTSCC T ss_pred CEEEEECCCCCHHHHHHHH----C----C---CCEEEEECCCHHHHHHHHHHHHHCCCCCC------EEEEECCHHHHCC T ss_conf 9899963708789999996----6----9---98588758999999999999875288752------3778645655210 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 866418999816856765310001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) ..+.+||+|+++--+ .|- ++..+---.++..+-..|+| ||+..+..+ T Consensus 129 ~~~~~fD~V~~~~~l--~~~----------------------~~~~~~~~~~l~~i~~~Lkp----gG~~i~t~~ 175 (298) T 1ri5_A 129 DLGKEFDVISSQFSF--HYA----------------------FSTSESLDIAQRNIARHLRP----GGYFIMTVP 175 (298) T ss_dssp CCSSCEEEEEEESCG--GGG----------------------GSSHHHHHHHHHHHHHTEEE----EEEEEEEEE T ss_pred CCCCCCCEEEECCCE--EEC----------------------CCCHHHHHHHHHHHHHHCCC----CCEEEEEEE T ss_conf 137775589973654--442----------------------78788999999999986689----988999970 No 52 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Probab=97.66 E-value=0.00086 Score=42.80 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=79.9 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH Q ss_conf 66575368179999999973178401101387764031176654046899999999985310053332255046666788 Q gi|254780836|r 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 (674) Q Consensus 172 ~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t 251 (674) +-..|---|.++..++..+ .-.++.+|.|-.||||++-......+. ...++|+.|++++. T Consensus 77 ~r~tqiiypkD~~~Ii~~l-----------di~PG~~VLE~GtGsG~lT~~LAr~vg---------p~G~V~t~D~~~~~ 136 (280) T 1i9g_A 77 PRGPQVIYPKDAAQIVHEG-----------DIFPGARVLEAGAGSGALTLSLLRAVG---------PAGQVISYEQRADH 136 (280) T ss_dssp CSCSCCCCHHHHHHHHHHT-----------TCCTTCEEEEECCTTSHHHHHHHHHHC---------TTSEEEEECSCHHH T ss_pred CCCCCCCCHHHHHHHHHHH-----------CCCCCCEEEEEEECCHHHHHHHHHHHC---------CCEEEEEEECCHHH T ss_conf 8886355858999999984-----------999999899922761599999999749---------98599999589999 Q ss_pred HHHHHHHHHH-HCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 9999999898-08875334566668--23475457999866418999816856765310001112344226666535777 Q gi|254780836|r 252 HAVCVAGMLI-RRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 (674) Q Consensus 252 yaIak~nMli-~g~~~d~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl 328 (674) ..+|+-|+-- .+... .| +..+|-. +..+++..||.|+.+-|- +| T Consensus 137 ~~~Ar~n~~~~~~~~~-------~nv~~~~~d~~-~~~~~~~~fD~VflDlp~--P~----------------------- 183 (280) T 1i9g_A 137 AEHARRNVSGCYGQPP-------DNWRLVVSDLA-DSELPDGSVDRAVLDMLA--PW----------------------- 183 (280) T ss_dssp HHHHHHHHHHHHTSCC-------TTEEEECSCGG-GCCCCTTCEEEEEEESSC--GG----------------------- T ss_pred HHHHHHHHHHHCCCCC-------CEEEEEECCCC-CCCCCCCCCCEEEECCCC--HH----------------------- T ss_conf 9999985554315788-------62999955512-255667887868972788--89----------------------- Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 747706599999999961466578807999738 Q gi|254780836|r 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) ..+.|+...||+ ||++++..| T Consensus 184 --------~~l~~~~~~Lkp----GG~lv~~~P 204 (280) T 1i9g_A 184 --------EVLDAVSRLLVA----GGVLMVYVA 204 (280) T ss_dssp --------GGHHHHHHHEEE----EEEEEEEES T ss_pred --------HHHHHHHHHCCC----CCEEEEECC T ss_conf --------999999984477----989999939 No 53 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Probab=97.60 E-value=0.00032 Score=45.58 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=75.7 Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH Q ss_conf 53681799999999731784011013877640311766540468999999999853100533322550466667889999 Q gi|254780836|r 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674) Q Consensus 176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674) .|...+++.+|+-. + .+....+|.|-.||||.++.... + . . -.+.|-|+++..-..| T Consensus 19 ~h~~~~~~~~l~~~-~----------~l~~~~~VLDiGcG~G~~~~~la----~---~-~----~~v~g~D~s~~~~~~a 75 (260) T 1vl5_A 19 IHAKGSDLAKLMQI-A----------ALKGNEEVLDVATGGGHVANAFA----P---F-V----KKVVAFDLTEDILKVA 75 (260) T ss_dssp ----CCCHHHHHHH-H----------TCCSCCEEEEETCTTCHHHHHHG----G---G-S----SEEEEEESCHHHHHHH T ss_pred HHHCCHHHHHHHHH-C----------CCCCCCEEEEECCCCCHHHHHHH----H---H-C----CEEEEEECCHHHHHHH T ss_conf 56570999999996-0----------89992999995464719999999----7---2-9----9699998999999986 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH Q ss_conf 99989808875334566668234754579998664189998168567653100011123442266665357777477065 Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 (674) Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~ 335 (674) +-+.--.|... -.+..||...- .+++..||.|+++== ..|=.+. T Consensus 76 ~~~~~~~g~~~-------i~~~~~d~~~l-~~~~~sfD~V~~~~~--l~h~~d~-------------------------- 119 (260) T 1vl5_A 76 RAFIEGNGHQQ-------VEYVQGDAEQM-PFTDERFHIVTCRIA--AHHFPNP-------------------------- 119 (260) T ss_dssp HHHHHHTTCCS-------EEEEECCC-CC-CSCTTCEEEEEEESC--GGGCSCH-------------------------- T ss_pred HHCCCCCCCCC-------CEEEECCCCCC-CCCCCCEEEEEEECC--HHHCCCH-------------------------- T ss_conf 61222245665-------24775112357-877785579987022--5526899-------------------------- Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 9999999996146657880799973 Q gi|254780836|r 336 MLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 336 ~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) -.++.++...||| ||+++|+- T Consensus 120 ~~~l~~~~r~LkP----gG~l~i~~ 140 (260) T 1vl5_A 120 ASFVSEAYRVLKK----GGQLLLVD 140 (260) T ss_dssp HHHHHHHHHHEEE----EEEEEEEE T ss_pred HHHHHHHHHHCCC----CCEEEEEE T ss_conf 9999999974285----82899997 No 54 >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Probab=97.58 E-value=0.00098 Score=42.44 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=67.4 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) +|+|-.||+|.++....++ ....++|.|+++.....|+.+.--.|.... -+...+|-..- .+ T Consensus 46 ~VLDiGcG~G~~~~~la~~-----------~~~~v~giD~s~~~l~~a~~~~~~~~~~~~------i~~~~~d~~~~-~~ 107 (219) T 3dlc_A 46 TCIDIGSGPGALSIALAKQ-----------SDFSIRALDFSKHMNEIALKNIADANLNDR------IQIVQGDVHNI-PI 107 (219) T ss_dssp EEEEETCTTSHHHHHHHHH-----------SEEEEEEEESCHHHHHHHHHHHHHTTCTTT------EEEEECBTTBC-SS T ss_pred EEEEECCCCCHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEECCCCCCCC-CC T ss_conf 3999627585999999953-----------699899997978999999874442166664------00013653356-75 Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 6641899981685676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) ++..||+|+++-.+- |-.+ - -.+++.+...||| ||++.|.- T Consensus 108 ~~~~fD~V~~~~~l~--h~~d-------------------------~-~~~l~~~~r~Lkp----gG~l~i~~ 148 (219) T 3dlc_A 108 EDNYADLIVSRGSVF--FWED-------------------------V-ATAFREIYRILKS----GGKTYIGG 148 (219) T ss_dssp CTTCEEEEEEESCGG--GCSC-------------------------H-HHHHHHHHHHEEE----EEEEEEEE T ss_pred CCCCCCEEEECCHHH--HCCC-------------------------H-HHHHHHHHHHCCC----CCEEEEEE T ss_conf 445552999844167--4589-------------------------9-9999999998580----83899996 No 55 >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Probab=97.53 E-value=0.00026 Score=46.22 Aligned_cols=142 Identities=15% Similarity=0.071 Sum_probs=81.7 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) +..+|.|-+||+|.++....+.+. + ...++|.|+++.....|+-+.--.+... -.+..||- .+ T Consensus 37 ~g~~VLDiGcG~G~~~~~la~~~~---~------~~~v~giD~s~~~i~~a~~~~~~~~~~~-------v~~~~~d~-~~ 99 (219) T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVG---E------KGKVYAIDVQEEMVNYAWEKVNKLGLKN-------VEVLKSEE-NK 99 (219) T ss_dssp TTCEEEESSCTTCTTHHHHHHHHT---T------TCEEEEEESCHHHHHHHHHHHHHHTCTT-------EEEEECBT-TB T ss_pred CCCEEEEECCCCCHHHHHHHHHCC---C------CEEEEEEEEHHHHHHHHHHHHHHHHCCE-------EHHHHHHH-HC T ss_conf 939999987888877999997508---9------8399998500377889999767640221-------00100033-32 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC Q ss_conf 99866418999816856765310001112344226666535777747706599999999961466578807999738971 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674) ..+++..||+|+++--+. | +| |- ..++..+...||| ||+++|+-.... T Consensus 100 lp~~~~sfD~V~~~~~l~--~----------------------~~---d~-~~~l~ei~rvLkp----gG~l~i~d~~~~ 147 (219) T 3dh0_A 100 IPLPDNTVDFIFMAFTFH--E----------------------LS---EP-LKFLEELKRVAKP----FAYLAIIDWKKE 147 (219) T ss_dssp CSSCSSCEEEEEEESCGG--G----------------------CS---SH-HHHHHHHHHHEEE----EEEEEEEEECSS T ss_pred CCCCCCCEEEHHHCCHHH--H----------------------CC---CH-HHHHHHHHHHCCC----CEEEEEEECCCC T ss_conf 775555421357314042--0----------------------77---99-9999999998683----818999988865 Q ss_pred -CCCCCC---CCCHHHHHHHHHHCCC-EEEEEECCC Q ss_conf -347764---4326899999988494-688831767 Q gi|254780836|r 365 -LFNGRA---GSGESEIRRWLLENDL-IEAIVALPT 395 (674) Q Consensus 365 -LF~G~a---gsGEs~IRk~lie~d~-ieaII~LP~ 395 (674) ...|.. .-.+.++++.|-+.++ +..++.+.. T Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 183 (219) T 3dh0_A 148 ERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK 183 (219) T ss_dssp CCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT T ss_pred CCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEECCC T ss_conf 466698757658999999999986996988888440 No 56 >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Probab=97.53 E-value=0.00092 Score=42.60 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=87.8 Q ss_pred CCCCCCH-HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 5753681-799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 174 AEDFMTP-RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 174 aGeffTP-R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) .+-||=+ +.+...|++.+. +.+...+ ..|.|-+||+|.|=.. +.+.. ..++|.|+|+.+. T Consensus 188 p~sFfQ~N~~~~~~l~~~v~----~~~~~~~---~~vlDLycG~Gt~sl~-------La~~~-----~~V~gvE~~~~av 248 (369) T 3bt7_A 188 ENSFTQPNAAMNIQMLEWAL----DVTKGSK---GDLLELYCGNGNFSLA-------LARNF-----DRVLATEIAKPSV 248 (369) T ss_dssp TTSCCCSBHHHHHHHHHHHH----HHTTTCC---SEEEEESCTTSHHHHH-------HGGGS-----SEEEEECCCHHHH T ss_pred CCCEECCCHHHHHHHHHHHH----HHHCCCC---CEEEECCCCCCHHHHH-------HHHCC-----CEEEEEEECHHHH T ss_conf 99770559899999999999----8715677---6488737896588999-------87308-----5788999702678 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCC---------CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 99999989808875334566668234754------579---------998664189998168567653100011123442 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST------LSK---------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT------L~~---------d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~ 317 (674) +-|+.|..+.|++.-. ...||. ++. -.....++|.|+.+||= T Consensus 249 ~~A~~Na~~n~i~N~~-------f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR---------------- 305 (369) T 3bt7_A 249 AAAQYNIAANHIDNVQ-------IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR---------------- 305 (369) T ss_dssp HHHHHHHHHTTCCSEE-------EECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT---------------- T ss_pred HHHHHHHHHCCCCCEE-------EEECCHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCC---------------- T ss_conf 9999999975988718-------99725999998876314566530231012658779989796---------------- Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCC Q ss_conf 2666653577774770659999999996146657880799973-89713477644326899999988494-688831767 Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPT 395 (674) Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~ 395 (674) -|. - . .+.-++++ . -|+.-|- |-++|- ..+. +| .++| |+.|. |= T Consensus 306 ------~Gl--~----~---~v~~~~~~--~-----~~ivYVSCnP~Tla--------rDl~-~L-~~gy~l~~~~--~~ 351 (369) T 3bt7_A 306 ------SGL--D----S---ETEKMVQA--Y-----PRILYISCNPETLC--------KNLE-TL-SQTHKVERLA--LF 351 (369) T ss_dssp ------TCC--C----H---HHHHHHTT--S-----SEEEEEESCHHHHH--------HHHH-HH-HHHEEEEEEE--EE T ss_pred ------CCC--H----H---HHHHHHHC--C-----CCEEEEECCHHHHH--------HHHH-HH-HCCCEEEEEE--EE T ss_conf ------251--8----9---99999856--9-----95999908989999--------9999-98-5485687999--97 Q ss_pred CCCCCCCCCEEEEEEEC Q ss_conf 76557886169999946 Q gi|254780836|r 396 DLFFRTNIATYLWILSN 412 (674) Q Consensus 396 ~lFynTgI~t~Iwil~k 412 (674) +||-.|.===+|-+|.+ T Consensus 352 D~FP~T~HvE~v~~l~r 368 (369) T 3bt7_A 352 DQFPYTHHMQCGVLLTA 368 (369) T ss_dssp CCSTTSSCCEEEEEEEE T ss_pred ECCCCCCEEEEEEEEEC T ss_conf 12899980888999963 No 57 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Probab=97.51 E-value=0.00049 Score=44.42 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=62.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|-.||||.++.. +.. . ...++|.|+++.+.++|+.++ .+ .-.+..||.+.-+ T Consensus 47 ~~vLDiGcG~G~~~~~----l~~---~-----~~~v~gvD~S~~mi~~a~~k~--~~---------~~~~~~~d~~~~~- 102 (220) T 3hnr_A 47 GNVLEFGVGTGNLTNK----LLL---A-----GRTVYGIEPSREMRMIAKEKL--PK---------EFSITEGDFLSFE- 102 (220) T ss_dssp SEEEEECCTTSHHHHH----HHH---T-----TCEEEEECSCHHHHHHHHHHS--CT---------TCCEESCCSSSCC- T ss_pred CEEEEECCCCCHHHHH----HHH---C-----CCEEEEEECCHHHHHHHHHCC--CC---------CCHHHHHHHHHHC- T ss_conf 9399972878599999----997---7-----998999958357789987425--65---------4103344454440- Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) ...+||+|+++= ...|=.+.+ ...+|+++...|++ ||++.+.. T Consensus 103 -~~~~fD~I~~~~--~l~h~~~~~------------------------~~~~l~~i~~~Lk~----gG~lii~~ 145 (220) T 3hnr_A 103 -VPTSIDTIVSTY--AFHHLTDDE------------------------KNVAIAKYSQLLNK----GGKIVFAD 145 (220) T ss_dssp -CCSCCSEEEEES--CGGGSCHHH------------------------HHHHHHHHHHHSCT----TCEEEEEE T ss_pred -CCCCCCEEEEHH--HHHHCCCHH------------------------HHHHHHHHHHHCCC----CCEEEEEE T ss_conf -177648897634--488599378------------------------99999999998583----84899998 No 58 >2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=97.48 E-value=8.1e-05 Score=49.49 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=62.5 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) |--+|+++|-.++...+ .+.+..+|+|-.||||.+-+.+.. .. .++||.|+++++.++ T Consensus 15 ~~p~Tk~evR~l~l~~L----------~l~~~~~VlDlg~G~G~~si~la~-------~~-----~~V~ave~~~~~i~~ 72 (183) T 2yxd_A 15 GVPITKEEIRAVSIGKL----------NLNKDDVVVDVGCGSGGMTVEIAK-------RC-----KFVYAIDYLDGAIEV 72 (183) T ss_dssp TBCCCCHHHHHHHHHHH----------CCCTTCEEEEESCCCSHHHHHHHT-------TS-----SEEEEEECSHHHHHH T ss_pred CCCCCHHHHHHHHHHHC----------CCCCCCEEEEEECCCCHHHHHHHH-------HC-----CEEEEEECCHHHHHH T ss_conf 99878799999999976----------998949999961747699999887-------38-----999999798999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC Q ss_conf 99998980887533456666823475457999866418999816 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN 298 (674) ++.|+-..|++. -.+..||.. +.+++..||.++.. T Consensus 73 a~~n~~~~gv~n-------v~~i~g~a~--~~l~~~~~D~v~ig 107 (183) T 2yxd_A 73 TKQNLAKFNIKN-------CQIIKGRAE--DVLDKLEFNKAFIG 107 (183) T ss_dssp HHHHHHHTTCCS-------EEEEESCHH--HHGGGCCCSEEEEC T ss_pred HHHHHHHCCCCC-------EEEEECCHH--HHHHCCCCCEEEEC T ss_conf 999999768998-------799946456--56406998949989 No 59 >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Probab=97.46 E-value=0.0015 Score=41.15 Aligned_cols=119 Identities=8% Similarity=0.046 Sum_probs=68.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-+||+|-+-+.+. ..+ ....++|.|+++.....|+.|+-..|.... -.+..||.+.... T Consensus 23 ~~vlDiGcg~G~l~~~l~----~~~------~~~~V~avDi~~~~l~~A~~n~~~~gl~~~------I~~~~~D~~~~~~ 86 (244) T 3gnl_A 23 ERIADIGSDHAYLPCFAV----KNQ------TASFAIAGEVVDGPFQSAQKQVRSSGLTEQ------IDVRKGNGLAVIE 86 (244) T ss_dssp EEEEEETCSTTHHHHHHH----HTT------SEEEEEEEESSHHHHHHHHHHHHHTTCTTT------EEEEECSGGGGCC T ss_pred CEEEEECCCHHHHHHHHH----HCC------CCCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEEEECCCHHHHC T ss_conf 989997186489999999----809------998899963889999999999998299986------7999887504321 Q ss_pred CCCCEEEE-EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC Q ss_conf 86641899-98168567653100011123442266665357777477065999999999614665788079997389713 Q gi|254780836|r 287 FTGKRFHY-CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674) Q Consensus 287 ~~~~kFD~-vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674) ....||. +++..+. -.+..++.........||+..+-.+ T Consensus 87 -~~~~~d~~viag~g~-----------------------------------~~i~~il~~~~~~l~~~g~liL~p~---- 126 (244) T 3gnl_A 87 -KKDAIDTIVIAGMGG-----------------------------------TLIRTILEEGAAKLAGVTKLILQPN---- 126 (244) T ss_dssp -GGGCCCEEEEEEECH-----------------------------------HHHHHHHHHTGGGGTTCCEEEEEES---- T ss_pred -CCCCCCEEEECCCCH-----------------------------------HHHHHHHHHHHHHHCCCCEEEEECC---- T ss_conf -557876899848888-----------------------------------9999999998997077987999638---- Q ss_pred CCCCCCCCHHHHHHHHHHCCCE Q ss_conf 4776443268999999884946 Q gi|254780836|r 366 FNGRAGSGESEIRRWLLENDLI 387 (674) Q Consensus 366 F~G~agsGEs~IRk~lie~d~i 387 (674) ++...+|+||.+++|. T Consensus 127 ------~~~~~lR~~L~~~gf~ 142 (244) T 3gnl_A 127 ------IAAWQLREWSEQNNWL 142 (244) T ss_dssp ------SCHHHHHHHHHHHTEE T ss_pred ------CCHHHHHHHHHHCCCE T ss_conf ------7779999999988797 No 60 >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Probab=97.45 E-value=0.0002 Score=46.91 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=53.7 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) .+.|-+||||.|=++|..+ .+ -+++-.|.|..+.++++.|+-.-+.... ...+...|.+.--.. T Consensus 56 ~~LDLFaGSG~lglEAlSR------GA-----~~v~fVE~~~~a~~~l~~N~~~l~~~~~-----~~~~~~~d~~~~l~~ 119 (201) T 2ift_A 56 ECLDGFAGSGSLGFEALSR------QA-----KKVTFLELDKTVANQLKKNLQTLKCSSE-----QAEVINQSSLDFLKQ 119 (201) T ss_dssp EEEETTCTTCHHHHHHHHT------TC-----SEEEEECSCHHHHHHHHHHHHHTTCCTT-----TEEEECSCHHHHTTS T ss_pred EEEECCCCCCHHHHHHHHC------CC-----CEEEEEEECHHHHHHHHHHHHHHCCCCC-----HHEEEEHHHHHHHHH T ss_conf 7998788828989999988------99-----3999997405577899999998386632-----002320345655430 Q ss_pred --CCCEEEEEEECCCCCCC Q ss_conf --66418999816856765 Q gi|254780836|r 288 --TGKRFHYCLSNPPFGKK 304 (674) Q Consensus 288 --~~~kFD~vlaNPPFg~~ 304 (674) ...+||+|.+.|||+.+ T Consensus 120 ~~~~~~fDlIFlDPPY~~~ 138 (201) T 2ift_A 120 PQNQPHFDVVFLDPPFHFN 138 (201) T ss_dssp CCSSCCEEEEEECCCSSSC T ss_pred CCCCCCCCEEEECCCCCCC T ss_conf 0246766558857975552 No 61 >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Probab=97.42 E-value=0.002 Score=40.44 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=77.8 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) -..|---|.++..++..+= -.++.+|.|-.||||.+-....+.+. + ...+||.|++++.+ T Consensus 84 r~tqiiypkD~a~Il~~l~-----------I~PG~rVLE~GtGsG~lt~~LAr~vg---p------~G~V~~~D~~~~~~ 143 (336) T 2b25_A 84 RGTAITFPKDINMILSMMD-----------INPGDTVLEAGSGSGGMSLFLSKAVG---S------QGRVISFEVRKDHH 143 (336) T ss_dssp CSSCCCCHHHHHHHHHHHT-----------CCTTCEEEEECCTTSHHHHHHHHHHC---T------TCEEEEEESSHHHH T ss_pred CCCCCCCHHHHHHHHHHHC-----------CCCCCEEEECCCCCCHHHHHHHHHHC---C------CCEEEEECCCHHHH T ss_conf 8877557168999999858-----------99998899835377799999999628---9------84899843999999 Q ss_pred HHHHHHHHHHCCCCCC--CCCCCCC--CCCCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 9999998980887533--4566668--234754579-9986641899981685676531000111234422666653577 Q gi|254780836|r 253 AVCVAGMLIRRLESDP--RRDLSKN--IQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 (674) Q Consensus 253 aIak~nMli~g~~~d~--~~~~~~N--I~~GdTL~~-d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g 327 (674) ++|+.|+--.+..... ......| +..+|--.. ..+....||.|+..-|- +| T Consensus 144 ~~Ar~n~~~~~~~~~~~~~~~~~~~v~~~~~di~~~~~~~~~~~~D~VfLDlp~--P~---------------------- 199 (336) T 2b25_A 144 DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN--PH---------------------- 199 (336) T ss_dssp HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS--TT---------------------- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCCCEEECCCCC--HH---------------------- T ss_conf 999999997432000122113677079997766652355688753331046769--89---------------------- Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 7747706599999999961466578807999738 Q gi|254780836|r 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 328 lP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .+|.|+...||| ||++++-.| T Consensus 200 ---------~~l~~~~r~LKP----GG~lvvy~P 220 (336) T 2b25_A 200 ---------VTLPVFYPHLKH----GGVCAVYVV 220 (336) T ss_dssp ---------TTHHHHGGGEEE----EEEEEEEES T ss_pred ---------HHHHHHHHHCCC----CCEEEEECC T ss_conf ---------999999984667----979999939 No 62 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Probab=97.41 E-value=0.00044 Score=44.73 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=62.9 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) ++.-+...++-.|.+.+ ...+..+|+|-.||||.+.....+.+. . ...++|.|++++.... T Consensus 55 ~~tis~P~~~A~ml~~L----------~l~~g~~VLeIGtGtGy~aa~la~~~~----~-----~~~V~~iE~~~~l~~~ 115 (317) T 1dl5_A 55 YSTSSQPSLMALFMEWV----------GLDKGMRVLEIGGGTGYNAAVMSRVVG----E-----KGLVVSVEYSRKICEI 115 (317) T ss_dssp EEEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSHHHHHHHHHHC----T-----TCEEEEEESCHHHHHH T ss_pred CEEECHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHHHH T ss_conf 62626799999999971----------899999899917976476899988618----8-----8679999578178999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC Q ss_conf 999989808875334566668234754579998664189998168 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP 299 (674) |+.|+--.|.+. -.+..||-..- ......||.|+++- T Consensus 116 A~~~l~~~g~~n-------v~~~~gD~~~g-~~~~~~fD~Iiv~~ 152 (317) T 1dl5_A 116 AKRNVERLGIEN-------VIFVCGDGYYG-VPEFSPYDVIFVTV 152 (317) T ss_dssp HHHHHHHTTCCS-------EEEEESCGGGC-CGGGCCEEEEEECS T ss_pred HHHHHHHHCCCC-------EEEEECCHHHC-CCCCCCCCEEEECC T ss_conf 999899735787-------39998955758-87789941999968 No 63 >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Probab=97.40 E-value=0.0024 Score=39.92 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=65.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|-.||||.+.....++ ...+.|.|+++...+.|+....-++.+. ....||-.. =. T Consensus 40 ~rVLDiGCG~G~~~~~la~~------------~~~v~g~D~s~~~l~~ak~~~~~~~~~~--------~~~~~d~~~-l~ 98 (227) T 1ve3_A 40 GKVLDLACGVGGFSFLLEDY------------GFEVVGVDISEDMIRKAREYAKSRESNV--------EFIVGDARK-LS 98 (227) T ss_dssp CEEEEETCTTSHHHHHHHHT------------TCEEEEEESCHHHHHHHHHHHHHTTCCC--------EEEECCTTS-CC T ss_pred CEEEEECCCCCHHHHHHHHC------------CCEEEEEECCCHHHHHHHHHHHHCCCCC--------CCCCCCCCC-CC T ss_conf 97999868888999999965------------9989999675046899999887527653--------333465334-88 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) +++..||+|+++=-| .| +|+. | .-.++..+...|+| ||+.++.. T Consensus 99 ~~~~sfD~V~~~~~l--~~----------------------~~~~-d-~~~~l~~~~r~Lkp----gG~lii~~ 142 (227) T 1ve3_A 99 FEDKTFDYVIFIDSI--VH----------------------FEPL-E-LNQVFKEVRRVLKP----SGKFIMYF 142 (227) T ss_dssp SCTTCEEEEEEESCG--GG----------------------CCHH-H-HHHHHHHHHHHEEE----EEEEEEEE T ss_pred CCCCEEEEEEEEHHH--HH----------------------CCHH-H-HHHHHHHHHHHCCC----CCEEEEEE T ss_conf 767705899860017--72----------------------9876-8-99999999998380----85899997 No 64 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Probab=97.37 E-value=0.0009 Score=42.66 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=64.4 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|+|-.||||+++..... . ...++|.|+++..-++|+.++ .+...+ -++..+|.-.- T Consensus 40 ~~~vLDiGcG~G~~t~~la~-------~-----~~~V~gvD~S~~~l~~a~~r~--~~~~~~------v~~~~~da~~l- 98 (263) T 2yqz_A 40 EPVFLELGVGTGRIALPLIA-------R-----GYRYIALDADAAMLEVFRQKI--AGVDRK------VQVVQADARAI- 98 (263) T ss_dssp CCEEEEETCTTSTTHHHHHT-------T-----TCEEEEEESCHHHHHHHHHHT--TTSCTT------EEEEESCTTSC- T ss_pred CCEEEEECCCCCHHHHHHHH-------C-----CCEEEEEECCHHHHHHHHHHC--CCCCCC------CHHHHHCCCCC- T ss_conf 99899951788699999996-------6-----998999989899999987402--101144------10222012223- Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 986641899981685676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) .|++..||+|+++--+ .|-.+. -..+..+...||| ||++++.. T Consensus 99 ~~~~~sfD~V~~~~~l--~~~~d~--------------------------~~~l~e~~r~LkP----GG~l~~~~ 141 (263) T 2yqz_A 99 PLPDESVHGVIVVHLW--HLVPDW--------------------------PKVLAEAIRVLKP----GGALLEGW 141 (263) T ss_dssp CSCTTCEEEEEEESCG--GGCTTH--------------------------HHHHHHHHHHEEE----EEEEEEEE T ss_pred CCCCCCCCEEEECCHH--HHCCCH--------------------------HHHHHHHHHHCCC----CCEEEEEE T ss_conf 4667610478751227--755899--------------------------9999999998580----83899996 No 65 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Probab=97.36 E-value=0.00099 Score=42.39 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=74.2 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) .|--.+-+.++++-+.. +....+|.|-.||+|.+.....+. . +....+.|.|+++.....|+ T Consensus 3 ~~~n~dyl~fli~~v~k---------~~~~~~ILDiGcG~G~~~~~la~~-------~--~~~~~v~gvD~s~~~l~~a~ 64 (284) T 3gu3_A 3 LYYNDDYVSFLVNTVWK---------ITKPVHIVDYGCGYGYLGLVLMPL-------L--PEGSKYTGIDSGETLLAEAR 64 (284) T ss_dssp TTCCHHHHHHHHHTTSC---------CCSCCEEEEETCTTTHHHHHHTTT-------S--CTTCEEEEEESCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHC---------CCCCCEEEEECCCCCHHHHHHHHH-------C--CCCCEEEEECCCHHHHHHHH T ss_conf 03777999999998635---------699897999548798999999985-------7--79988999849899999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH Q ss_conf 99898088753345666682347545799986641899981685676531000111234422666653577774770659 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~ 336 (674) .+.--.+.+. ++..||...- .++ .+||+|+++-=+. | +| +- . T Consensus 65 ~~~~~~~~~~--------~~~~~d~~~~-~~~-~~fD~V~~~~~l~--h----------------------~~---d~-~ 106 (284) T 3gu3_A 65 ELFRLLPYDS--------EFLEGDATEI-ELN-DKYDIAICHAFLL--H----------------------MT---TP-E 106 (284) T ss_dssp HHHHSSSSEE--------EEEESCTTTC-CCS-SCEEEEEEESCGG--G----------------------CS---SH-H T ss_pred HHHHHCCCCC--------EEECCCCCCC-CCC-CCEEEEEEHHHHH--C----------------------CC---CH-H T ss_conf 8666414200--------1200111247-989-9757998864765--6----------------------78---89-9 Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 99999999614665788079997389 Q gi|254780836|r 337 LFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 337 lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) .+|+++...||| ||++.++-+. T Consensus 107 ~~l~~~~~~Lkp----gG~lii~ep~ 128 (284) T 3gu3_A 107 TMLQKMIHSVKK----GGKIICFEPH 128 (284) T ss_dssp HHHHHHHHTEEE----EEEEEEEECC T ss_pred HHHHHHHHHCCC----CCEEEEEECC T ss_conf 999999998388----9589999787 No 66 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Probab=97.34 E-value=0.0019 Score=40.52 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=61.2 Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999 Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) +||. .++++++++- + .| +.+|+|-.||+|+++....+. . ...+.|.|+++...+.|+. T Consensus 20 ~~~~-~~~~l~~~l~------l--~p--g~rVLDiGcG~G~~~~~la~~-------~----~~~v~gvD~s~~~l~~a~~ 77 (256) T 1nkv_A 20 FTEE-KYATLGRVLR------M--KP--GTRILDLGSGSGEMLCTWARD-------H----GITGTGIDMSSLFTAQAKR 77 (256) T ss_dssp CCHH-HHHHHHHHTC------C--CT--TCEEEEETCTTCHHHHHHHHH-------T----CCEEEEEESCHHHHHHHHH T ss_pred CCHH-HHHHHHHHCC------C--CC--CCEEEEECCCCCHHHHHHHHH-------C----CCEEEEEECCHHHHHHHHH T ss_conf 8899-9999999708------9--99--999999858888899999986-------4----9989999898367789988 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 98980887533456666823475457999866418999816856 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674) +.--.|.... -.+..+|.. +.+++..||.|+++=-+ T Consensus 78 ~~~~~gl~~~------v~~~~~d~~--~~~~~~~fD~v~~~~~~ 113 (256) T 1nkv_A 78 RAEELGVSER------VHFIHNDAA--GYVANEKCDVAACVGAT 113 (256) T ss_dssp HHHHTTCTTT------EEEEESCCT--TCCCSSCEEEEEEESCG T ss_pred HHHHHCCCCC------CCCCCCCHH--HCCCCCCEEEEEEECCE T ss_conf 6776065544------441136364--50567844699997441 No 67 >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14 Probab=97.33 E-value=0.0047 Score=37.99 Aligned_cols=141 Identities=14% Similarity=0.189 Sum_probs=80.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 44389999999998622766575368179999999973178401101387764031176654046899999999985310 Q gi|254780836|r 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674) Q Consensus 154 ~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674) ....+|+.+|+|.-- .| +++.+.+..++- ..+ .|+ .+|+|-.||||.++....+++ T Consensus 25 ~va~~fd~~i~r~iP--------~Y--~~~~~~i~~~~~----~~~--~~~--~~vLDlGcGtG~~~~~l~~~~------ 80 (244) T 1im8_A 25 NVAEVFPDMIQRSVP--------GY--SNIITAIGMLAE----RFV--TAD--SNVYDLGCSRGAATLSARRNI------ 80 (244) T ss_dssp HHHHHHHHHHHHHST--------TH--HHHHHHHHHHHH----HHC--CTT--CEEEEESCTTCHHHHHHHHTC------ T ss_pred HHHHHHHHHHHHCCC--------CH--HHHHHHHHHHHH----HHC--CCC--CEEEEEEECCCHHHHHHHHHC------ T ss_conf 277760668870599--------88--999999999999----867--997--989992002228899988633------ Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH Q ss_conf 05333225504666678899999998980887533456666823475457999866418999816856765310001112 Q gi|254780836|r 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 (674) Q Consensus 234 ~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~ 313 (674) . .....++|.|+++....+|+.+.--.+.... -....+|.+. ++...||+++++=-+ .|= T Consensus 81 -~-~~~~~v~giD~S~~ml~~A~~k~~~~~~~~~------~~~~~~d~~~---~~~~~~d~i~~~~~l--~~~------- 140 (244) T 1im8_A 81 -N-QPNVKIIGIDNSQPMVERCRQHIAAYHSEIP------VEILCNDIRH---VEIKNASMVILNFTL--QFL------- 140 (244) T ss_dssp -C-CSSCEEEEECSCHHHHHHHHHHHHTSCCSSC------EEEECSCTTT---CCCCSEEEEEEESCG--GGS------- T ss_pred -C-CCCCEEEEECCCHHHHHHHHHHHHHCCCCCC------CCCCCCCCCC---CCCCCCCEEEEEEEE--EEC------- T ss_conf -6-9980899976978999999864431065432------1101232100---012432126886422--305------- Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 3442266665357777477065999999999614665788079997 Q gi|254780836|r 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674) Q Consensus 314 ~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674) |+. + -..+++.+-..|+| ||+..+. T Consensus 141 ---------------~~~-d-~~~~l~~i~~~Lkp----gG~lii~ 165 (244) T 1im8_A 141 ---------------PPE-D-RIALLTKIYEGLNP----NGVLVLS 165 (244) T ss_dssp ---------------CGG-G-HHHHHHHHHHHEEE----EEEEEEE T ss_pred ---------------CHH-H-HHHHHHHHHHHCCC----CCEEEEE T ss_conf ---------------617-8-89999999851789----9689999 No 68 >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Probab=97.31 E-value=0.00061 Score=43.77 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=63.2 Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999 Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) .-||+-.+++.+++- ..+ .|| .+|.|-+||||+.+.. +.. .......++|.|+++...++|+. T Consensus 99 l~~r~~~~~~~~~~~----~~l--~~g--~~vLDvGcG~G~~~~~-------l~~--~~~p~~~v~gvD~S~~~l~~A~~ 161 (305) T 3ocj_A 99 LATRERHGHFRRALQ----RHL--RPG--CVVASVPCGWMSELLA-------LDY--SACPGVQLVGIDYDPEALDGATR 161 (305) T ss_dssp HHHHHHHHHHHHHHH----HHC--CTT--CEEEETTCTTCHHHHT-------SCC--TTCTTCEEEEEESCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHH----HCC--CCC--CEEEEECCCCHHHHHH-------HHH--HHCCCCEEEEEECCHHHHHHHHH T ss_conf 377888999999999----409--995--9999944747699999-------999--71899589999798889999975 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 989808875334566668234754579998664189998168567 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674) +.--+|.... -....+|...-+ ...+||.|++|+++- T Consensus 162 ~~~~~~l~~~------~~~~~~d~~~l~--~~~~~d~iv~~~~~~ 198 (305) T 3ocj_A 162 LAAGHALAGQ------ITLHRQDAWKLD--TREGYDLLTSNGLNI 198 (305) T ss_dssp HHTTSTTGGG------EEEEECCGGGCC--CCSCEEEEECCSSGG T ss_pred HHHHHCCCCC------CCCCCCCHHHHC--CCCCCCEEEEECCCC T ss_conf 3022012322------233200088742--466401799813421 No 69 >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Probab=97.28 E-value=0.0043 Score=38.25 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=64.4 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) |.|+---...-|.+.+| .|.++.+|.|-|||.||-.+...+.+. . ...+++.|+++.-... T Consensus 82 G~~~vQd~aS~l~~~~l----------~~~~g~~VLD~CAapGgKt~~la~l~~----~-----~~~i~a~D~~~~Rl~~ 142 (309) T 2b9e_A 82 GHLILQDRASCLPAMLL----------DPPPGSHVIDACAAPGNKTSHLAALLK----N-----QGKIFAFDLDAKRLAS 142 (309) T ss_dssp TSEEECCTGGGHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHHT----T-----CSEEEEEESCHHHHHH T ss_pred CEEEEECHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHHHH T ss_conf 77999878998999973----------999999499967896579999998725----8-----9669998087888999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEEECCCCCC Q ss_conf 9999898088753345666682347545799986--641899981685676 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGK 303 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~--~~kFD~vlaNPPFg~ 303 (674) .+.||--.|+.. -.+..+|.+.-+... -.+||.||..||-+- T Consensus 143 l~~~~~r~g~~~-------v~~~~~d~~~~~~~~~~~~~fd~IlvDaPCSg 186 (309) T 2b9e_A 143 MATLLARAGVSC-------CELAEEDFLAVSPSDPRYHEVHYILLDPSCSG 186 (309) T ss_dssp HHHHHHHTTCCS-------EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC T ss_pred HHHHHHHCCCCE-------EEEEECCHHHCCCCCCCCCCEEEEEECCCCCC T ss_conf 987677508734-------99970424444433444551139993289788 No 70 >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Probab=97.26 E-value=0.0014 Score=41.37 Aligned_cols=142 Identities=7% Similarity=0.019 Sum_probs=77.0 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||||.++... .... ....++|.|+++...++|+.+.--.|.... ....+.... T Consensus 50 ~~~VLDiGCG~G~~~~~l----a~~~------p~~~v~gvD~s~~~l~~a~~~~~~~~~~~~--------~~~~~~~~~- 110 (200) T 3fzg_A 50 VSSILDFGCGFNPLALYQ----WNEN------EKIIYHAYDIDRAEIAFLSSIIGKLKTTIK--------YRFLNKESD- 110 (200) T ss_dssp CSEEEEETCTTHHHHHHH----HCSS------CCCEEEEECSCHHHHHHHHHHHHHSCCSSE--------EEEECCHHH- T ss_pred CCEEEEECCCCCHHHHHH----HHHC------CCCEEEEEECCHHHHHHHHHHHHHCCCCEE--------EEEECHHHH- T ss_conf 987999588678779999----9878------997899985999999999851023288515--------665101333- Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC Q ss_conf 98664189998168567653100011123442266665357777477065999999999614665788079997389713 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674) .+..+||+|+++--+- | +.+ . + .+++++...|++ ||.+.+ .+-..+ T Consensus 111 -~~~~~fD~i~~~~~l~--~------~~~-----~--~-------------~~l~~~~~~L~~----gG~~v~-~~~~~~ 156 (200) T 3fzg_A 111 -VYKGTYDVVFLLKMLP--V------LKQ-----Q--D-------------VNILDFLQLFHT----QNFVIS-FPIKSL 156 (200) T ss_dssp -HTTSEEEEEEEETCHH--H------HHH-----T--T-------------CCHHHHHHTCEE----EEEEEE-EECCCC T ss_pred -CCCCCCCEEEECCCHH--C------CCC-----H--H-------------HHHHHHHHHHCC----CCEEEE-EECCCC T ss_conf -4478969898738332--3------788-----9--9-------------999999996079----958999-734334 Q ss_pred CCCCCCCC---HHHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 47764432---689999998849468883176776557 Q gi|254780836|r 366 FNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400 (674) Q Consensus 366 F~G~agsG---Es~IRk~lie~d~ieaII~LP~~lFyn 400 (674) .....+.. +..+.+.+-+..++.-.+.+|+.++|- T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i 194 (200) T 3fzg_A 157 SGKEKGMEENYQLWFESFTKGWIKILDSKVIGNELVYI 194 (200) T ss_dssp C--CTTCCCCHHHHHHHHTTTTSCEEEEEEETTEEEEE T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEE T ss_conf 77540556449999997633676055899606536833 No 71 >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Probab=97.25 E-value=0.0016 Score=41.07 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=64.9 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) .+.+|.|-.||+|+++..... .. ..++.|.++++...+.|+....-.+.... ..+..+|.. + T Consensus 61 ~g~~VLDiGcG~G~~~~~~~~-------~~----~~~v~gvD~s~~~~~~~~~~~~~~~~~~~------~~~~~~d~~-~ 122 (273) T 3bus_A 61 SGDRVLDVGCGIGKPAVRLAT-------AR----DVRVTGISISRPQVNQANARATAAGLANR------VTFSYADAM-D 122 (273) T ss_dssp TTCEEEEESCTTSHHHHHHHH-------HS----CCEEEEEESCHHHHHHHHHHHHHTTCTTT------EEEEECCTT-S T ss_pred CCCEEEEECCCCCHHHHHHHH-------HC----CCEEEEEECCHHHHHHHHHHHHHHCCCCE------EECCCCCCC-C T ss_conf 979899978979988999998-------45----98899997848889999999987177732------100134434-6 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 998664189998168567653100011123442266665357777477065999999999614665788079997 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674) -.++..+||+|+++=-+- | +|.. -.+|.++-..||| ||++++. T Consensus 123 l~~~~~~fD~v~~~~~l~--h----------------------~~d~----~~~l~~~~r~Lkp----gG~l~i~ 165 (273) T 3bus_A 123 LPFEDASFDAVWALESLH--H----------------------MPDR----GRALREMARVLRP----GGTVAIA 165 (273) T ss_dssp CCSCTTCEEEEEEESCTT--T----------------------SSCH----HHHHHHHHTTEEE----EEEEEEE T ss_pred CCCCCCCCCEEEECCCEE--E----------------------CCCH----HHHHHHHHHHCCC----CCEEEEE T ss_conf 887777624898646265--0----------------------6649----9999999986599----9689999 No 72 >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Probab=97.20 E-value=0.0026 Score=39.62 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=49.0 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) ...+|.|-+||+||.|... .+ .+ ...+.|.|++++....|+-..--.+...............||.... T Consensus 34 ~~~~VLDlGCG~G~dl~k~---~~-----~~---~~~v~GiDis~~~i~~A~~r~~~~~~~~~~~~~~~~~f~~~D~~~~ 102 (313) T 3bgv_A 34 RDITVLDLGCGKGGDLLKW---KK-----GR---INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKE 102 (313) T ss_dssp -CCEEEEETCTTTTTHHHH---HH-----TT---CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTS T ss_pred CCCEEEEEECCCCHHHHHH---HH-----CC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHC T ss_conf 9797999734776889999---96-----59---9979999599999999999988543222223577638996563212 Q ss_pred C-----CCCCCEEEEEEECCC Q ss_conf 9-----986641899981685 Q gi|254780836|r 285 D-----LFTGKRFHYCLSNPP 300 (674) Q Consensus 285 d-----~~~~~kFD~vlaNPP 300 (674) . ..+..+||+|.++-= T Consensus 103 ~~~~~~~~~~~~FD~I~~~f~ 123 (313) T 3bgv_A 103 LLIDKFRDPQMCFDICSCQFV 123 (313) T ss_dssp CSTTTCSSTTCCEEEEEEETC T ss_pred HHHHHCCCCCCCCEEEEECCC T ss_conf 013314676776108996564 No 73 >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Probab=97.20 E-value=0.012 Score=35.33 Aligned_cols=127 Identities=11% Similarity=0.081 Sum_probs=75.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|+.||+|..+. ++.. . ...++|.|+++.....|+..+.-++... .-.+..+|-+.-+ T Consensus 68 ~rVLdlGCG~G~~~~----~la~----~----g~~V~giD~S~~ai~~a~~~~~~~~~~~------~v~~~~~D~~~~~- 128 (235) T 3lcc_A 68 GRALVPGCGGGHDVV----AMAS----P----ERFVVGLDISESALAKANETYGSSPKAE------YFSFVKEDVFTWR- 128 (235) T ss_dssp EEEEEETCTTCHHHH----HHCB----T----TEEEEEECSCHHHHHHHHHHHTTSGGGG------GEEEECCCTTTCC- T ss_pred CCEEEECCCCCHHHH----HHHH----C----CCEEEEEECCHHHHHHHHHHHHHCCCCC------CEEEEECCHHHHC- T ss_conf 948994388878999----9986----6----9879997466999999999876415442------1002325676717- Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC---- Q ss_conf 8664189998168567653100011123442266665357777477065999999999614665788079997389---- Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS---- 362 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng---- 362 (674) +...||.|+++--|.. +|+.- .-.|+..+...|+| ||++.++... T Consensus 129 -~~~~fD~i~~~~~~~~------------------------~~~~~--r~~~~~~i~~~LkP----GG~lv~~~~~~~~~ 177 (235) T 3lcc_A 129 -PTELFDLIFDYVFFCA------------------------IEPEM--RPAWAKSMYELLKP----DGELITLMYPITDH 177 (235) T ss_dssp -CSSCEEEEEEESSTTT------------------------SCGGG--HHHHHHHHHHHEEE----EEEEEEEECCCSCC T ss_pred -CCCCCCEEEEEEEEEC------------------------CCHHH--HHHHHHHHHHHCCC----CCEEEEEEECCCCC T ss_conf -5566457999987121------------------------88889--99999999998186----82999999238888 Q ss_pred --CCCCCCCCCCCHHHHHHHHHHCCCE Q ss_conf --7134776443268999999884946 Q gi|254780836|r 363 --SPLFNGRAGSGESEIRRWLLENDLI 387 (674) Q Consensus 363 --s~LF~G~agsGEs~IRk~lie~d~i 387 (674) +|-|. ..+.++++.+-..++- T Consensus 178 ~~gpP~~----~~~~e~~~~~~~~gf~ 200 (235) T 3lcc_A 178 VGGPPYK----VDVSTFEEVLVPIGFK 200 (235) T ss_dssp CSCSSCC----CCHHHHHHHHGGGTEE T ss_pred CCCCCCC----CCHHHHHHHHHHCCCE T ss_conf 8899998----9999999998647967 No 74 >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Probab=97.16 E-value=0.0023 Score=40.03 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=68.6 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) +..+|+|-.||+|+++....+.. + ..+.|.++++...++|+...--.|+... -.+..||-..- T Consensus 82 ~~~~VLDiGCG~G~~~~~la~~~-------g----~~v~gvD~s~~~i~~a~~~~~~~gl~~~------v~~~~~d~~~l 144 (297) T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKF-------G----VSIDCLNIAPVQNKRNEEYNNQAGLADN------ITVKYGSFLEI 144 (297) T ss_dssp TTCEEEEETCTTSHHHHHHHHHH-------C----CEEEEEESCHHHHHHHHHHHHHHTCTTT------EEEEECCTTSC T ss_pred CCCEEEEECCCCCHHHHHHHHHC-------C----CEEEEEECCHHHHHHHHHHHHHCCCCCC------CEEEECCCCCC T ss_conf 99989998899998999999963-------9----8599996742778888764432056766------22786122256 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 998664189998168567653100011123442266665357777477065999999999614665788079997 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674) .+++..||.|++.--+- + +| |- -.++..+-..||| ||++++. T Consensus 145 -~~~~~~fD~V~~~~~l~--h----------------------~~---d~-~~~l~~~~r~Lkp----GG~l~~~ 186 (297) T 2o57_A 145 -PCEDNSYDFIWSQDAFL--H----------------------SP---DK-LKVFQECARVLKP----RGVMAIT 186 (297) T ss_dssp -SSCTTCEEEEEEESCGG--G----------------------CS---CH-HHHHHHHHHHEEE----EEEEEEE T ss_pred -CCCCCCEEEEEECCCHH--H----------------------CC---CH-HHHHHHHHHHCCC----CCEEEEE T ss_conf -76665110999857244--2----------------------37---99-9999999997198----8189999 No 75 >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Probab=97.15 E-value=0.0023 Score=39.96 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=50.9 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++... . .......++|.|+++....+|+.+.-..+... +...+|.+... T Consensus 133 ~~~vlD~GcG~G~~~~~l----~------~~~~~~~v~g~D~s~~~i~~a~~~~~~~~~~~--------~~~~~d~~~~~ 194 (281) T 3lcv_B 133 PNTLRDLACGLNPLAAPW----M------GLPAETVYIASDIDARLVGFVDEALTRLNVPH--------RTNVADLLEDR 194 (281) T ss_dssp CSEEEETTCTTGGGCCTT----T------TCCTTCEEEEEESBHHHHHHHHHHHHHTTCCE--------EEEECCTTTSC T ss_pred CCEEEEECCCCCHHHHHH----H------HHCCCCEEEEEECCHHHHHHHHHHHHHCCCCE--------EEEEECHHHHC T ss_conf 986998389888899999----9------74997749996599999999999998668873--------89981354407 Q ss_pred CCCCCEEEEEEECCCC Q ss_conf 9866418999816856 Q gi|254780836|r 286 LFTGKRFHYCLSNPPF 301 (674) Q Consensus 286 ~~~~~kFD~vlaNPPF 301 (674) +...||+|++.--+ T Consensus 195 --~~~~fD~v~~~~vl 208 (281) T 3lcv_B 195 --LDEPADVTLLLKTL 208 (281) T ss_dssp --CCSCCSEEEETTCH T ss_pred --CCCCCCEEEEHHHH T ss_conf --65565677653448 No 76 >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Probab=97.14 E-value=0.0016 Score=41.12 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=98.5 Q ss_pred CCCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 575368-1799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 174 AEDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 174 aGeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) ++.||- -+.....|++.+. +.+ .+....+|+|-.||+|.|=.... .. .-.++|.|+++.+. T Consensus 260 p~sFfQ~N~~~~~~l~~~v~----~~l--~~~~~~~vlDLYcG~G~fsl~La-------~~-----~~~V~gvE~~~~Av 321 (433) T 1uwv_A 260 PRDFIQVNAGVNQKMVARAL----EWL--DVQPEDRVLDLFCGMGNFTLPLA-------TQ-----AASVVGVEGVPALV 321 (433) T ss_dssp SSSCCCSBHHHHHHHHHHHH----HHH--TCCTTCEEEEESCTTTTTHHHHH-------TT-----SSEEEEEESCHHHH T ss_pred CCHHHHCCHHHHHHHHHHHH----HHH--CCCCCCEEEEECCCCCHHHHHHH-------HH-----CCEEEEEECCHHHH T ss_conf 74131125888999999999----984--45688779995688517778766-------50-----56245663549999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 99999989808875334566668234754---579998664189998168567653100011123442266665357777 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674) .-|+.|.-+.|++.- ....||. |........+||.|+.+|| |-| +. T Consensus 322 ~~A~~na~~n~~~n~-------~f~~~~~~~~~~~~~~~~~~~d~vilDPP----------------------R~G--~~ 370 (433) T 1uwv_A 322 EKGQQNARLNGLQNV-------TFYHENLEEDVTKQPWAKNGFDKVLLDPA----------------------RAG--AA 370 (433) T ss_dssp HHHHHHHHHTTCCSE-------EEEECCTTSCCSSSGGGTTCCSEEEECCC----------------------TTC--CH T ss_pred HHHHHHHHHCCCCCE-------EEEECCHHHHHHHHHHHCCCCCEEEECCC----------------------CCC--HH T ss_conf 999999998499756-------99914756664430665279998998999----------------------807--09 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEE Q ss_conf 4770659999999996146657880799973-89713477644326899999988494-688831767765578861699 Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYL 407 (674) Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~I 407 (674) -+++.++ ++++ -|++-|- |-.+|-| .++ .|++.+| |+.|. |=+||-.|.==-+| T Consensus 371 -------~~~~~l~-~~~p-----~~IvYVSCnP~TlaR--------Dl~-~L~~~gy~l~~i~--~~D~FP~T~HvE~v 426 (433) T 1uwv_A 371 -------GVMQQII-KLEP-----IRIVYVSCNPATLAR--------DSE-ALLKAGYTIARLA--MLDMFPHTGHLESM 426 (433) T ss_dssp -------HHHHHHH-HHCC-----SEEEEEESCHHHHHH--------HHH-HHHHTTCEEEEEE--EECCSTTSSCCEEE T ss_pred -------HHHHHHH-HCCC-----CEEEEEECCHHHHHH--------HHH-HHHHCCCEEEEEE--EEECCCCCCEEEEE T ss_conf -------9999998-3697-----959999089899998--------999-9987896685999--95338998618999 Q ss_pred EEEECCC Q ss_conf 9994688 Q gi|254780836|r 408 WILSNRK 414 (674) Q Consensus 408 wil~k~K 414 (674) -+|++-| T Consensus 427 ~~l~R~~ 433 (433) T 1uwv_A 427 VLFSRVK 433 (433) T ss_dssp EEEEC-- T ss_pred EEEEECC T ss_conf 9999769 No 77 >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Probab=97.10 E-value=0.004 Score=38.47 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=57.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|..||+|.++.. +.+. + ..+.|.|+++....+|+.... ... .++...+....+. T Consensus 54 ~~vLDiGcG~G~~~~~----l~~~----g----~~v~gvD~S~~~i~~A~~~~~----~~~------~~~~~~~~~~~~~ 111 (227) T 3e8s_A 54 ERVLDLGCGEGWLLRA----LADR----G----IEAVGVDGDRTLVDAARAAGA----GEV------HLASYAQLAEAKV 111 (227) T ss_dssp SEEEEETCTTCHHHHH----HHTT----T----CEEEEEESCHHHHHHHHHTCS----SCE------EECCHHHHHTTCS T ss_pred CEEEEECCCCCHHHHH----HHHC----C----CEEEEECCCHHHHHHHHHHCC----CCC------CEEEEEECCCCCC T ss_conf 9899976898399999----9976----9----969998681788999998601----465------1244330111122 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 8664189998168567653100011123442266665357777477065999999999614665788079997389 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) ..+..||+|+++=-+ .| .+ . -.+++.+-..|+| ||++.+..++ T Consensus 112 ~~~~~fD~V~~~~~l--~~-~d----------------------~----~~~l~~~~r~Lkp----gG~li~~~~~ 154 (227) T 3e8s_A 112 PVGKDYDLICANFAL--LH-QD----------------------I----IELLSAMRTLLVP----GGALVIQTLH 154 (227) T ss_dssp CCCCCEEEEEEESCC--CS-SC----------------------C----HHHHHHHHHTEEE----EEEEEEEECC T ss_pred CCCCCCCEEEEEEEE--EE-CC----------------------H----HHHHHHHHHHCCC----CCEEEEEECC T ss_conf 467771489996378--60-89----------------------9----9999999998388----9389999767 No 78 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Probab=97.07 E-value=0.0015 Score=41.30 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=58.6 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) +++++-+..++ + .+ .+..+|.|-.||+|++..... + ... ..+.|.|+++..-..|+.++- T Consensus 31 ~e~~~~~l~~l--~---~l----~~~~~VLDIGCG~G~~~~~lA----~---~~~----~~V~giD~s~~~l~~a~~~~~ 90 (267) T 3kkz_A 31 PEVTLKALSFI--D---NL----TEKSLIADIGCGTGGQTMVLA----G---HVT----GQVTGLDFLSGFIDIFNRNAR 90 (267) T ss_dssp HHHHHHHHTTC--C---CC----CTTCEEEEETCTTCHHHHHHH----T---TCS----SEEEEEESCHHHHHHHHHHHH T ss_pred HHHHHHHHHHC--C---CC----CCCCEEEEECCCCCHHHHHHH----H---HCC----CEEEEEECCCHHHHHHHHHCC T ss_conf 99999999817--2---79----999989996278979999999----7---479----989999797316589887323 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 80887533456666823475457999866418999816856 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674) -.|.... -....+|...- .+++.+||+|++.=-+ T Consensus 91 ~~~l~~~------v~~~~~d~~~l-~~~~~~FD~I~s~~~l 124 (267) T 3kkz_A 91 QSGLQNR------VTGIVGSMDDL-PFRNEELDLIWSEGAI 124 (267) T ss_dssp HTTCTTT------EEEEECCTTSC-CCCTTCEEEEEESSCG T ss_pred CCCCCCC------CCHHHCCCCCC-CCCCCCEEEEEECHHH T ss_conf 2344433------10010012356-7788846689740437 No 79 >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Probab=97.06 E-value=0.00016 Score=47.51 Aligned_cols=79 Identities=19% Similarity=0.078 Sum_probs=53.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-C Q ss_conf 031176654046899999999985310053332255046666788999999989808875334566668234754579-9 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D 285 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d 285 (674) .+|+|-|||.|+....... . ...+.|.|+++.+.++|+.|+-.-+.... ..++..||.+.- . T Consensus 95 ~~v~Dl~cG~G~da~alA~-------~-----~~~V~~vE~d~~~~~~A~~N~~~~~~~~~-----~v~~~~~D~~~~l~ 157 (410) T 3ll7_A 95 TKVVDLTGGLGIDFIALMS-------K-----ASQGIYIERNDETAVAARHNIPLLLNEGK-----DVNILTGDFKEYLP 157 (410) T ss_dssp CEEEESSCSSSHHHHHHHT-------T-----CSEEEEEESCHHHHHHHHHHHHHHSCTTC-----EEEEEESCGGGSHH T ss_pred CEEEECCCCHHHHHHHHHH-------C-----CCEEEEEECCHHHHHHHHHHHHHHHCCCC-----CEEEEECCHHHHHH T ss_conf 9899878866799999996-------3-----99899995899999999984898726788-----26999666888875 Q ss_pred CCCCCEEEEEEECCCCC Q ss_conf 98664189998168567 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFG 302 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg 302 (674) ......||+|+.+||.- T Consensus 158 ~~~~~~~d~v~~DPaRR 174 (410) T 3ll7_A 158 LIKTFHPDYIYVDPARR 174 (410) T ss_dssp HHHHHCCSEEEECCEEC T ss_pred HCCCCCCCEEEECCCCC T ss_conf 34677788899766233 No 80 >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Probab=97.00 E-value=0.0031 Score=39.15 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=66.0 Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998 Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674) Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674) +|.+..|+..+ .+.....|.|-.||||.+.....++ .+. ..+.|.|+++.+-..|+.+. T Consensus 19 ~~~~~~ll~~~-----------~~~~~~rVLDiGCGtG~~t~~la~~----~~~------~~v~gvD~S~~ml~~A~~~~ 77 (259) T 2p35_A 19 TRPARDLLAQV-----------PLERVLNGYDLGCGPGNSTELLTDR----YGV------NVITGIDSDDDMLEKAADRL 77 (259) T ss_dssp GHHHHHHHTTC-----------CCSCCSSEEEETCTTTHHHHHHHHH----HCT------TSEEEEESCHHHHHHHHHHS T ss_pred HHHHHHHHHCC-----------CCCCCCEEEEECCCCCHHHHHHHHH----CCC------CEEEEEECCHHHHHHHHHHC T ss_conf 66999999528-----------8889898999816286999999987----899------87999989879999999725 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 98088753345666682347545799986641899981685676531000111234422666653577774770659999 Q gi|254780836|r 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 (674) Q Consensus 260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl 339 (674) .++ .+..+|-..- . .+.+||+|++|= ...|-.+. . .++ T Consensus 78 --~~v----------~~~~~d~~~~-~-~~~~fD~V~s~~--~l~~~~d~-------------------------~-~~l 115 (259) T 2p35_A 78 --PNT----------NFGKADLATW-K-PAQKADLLYANA--VFQWVPDH-------------------------L-AVL 115 (259) T ss_dssp --TTS----------EEEECCTTTC-C-CSSCEEEEEEES--CGGGSTTH-------------------------H-HHH T ss_pred --CCC----------CCEEEEHHHC-C-CCCCCCEECCCC--EEEECCCH-------------------------H-HHH T ss_conf --663----------1201424212-4-354555641201--57746888-------------------------9-999 Q ss_pred HHHHHHHCCCCCCCCEEEEECCC Q ss_conf 99999614665788079997389 Q gi|254780836|r 340 MHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 340 qh~i~klk~~~~~ggr~aIV~ng 362 (674) ..+..-||| ||++++.+++ T Consensus 116 ~~~~~~Lkp----gG~l~~~~~~ 134 (259) T 2p35_A 116 SQLMDQLES----GGVLAVQMPD 134 (259) T ss_dssp HHHGGGEEE----EEEEEEEEEC T ss_pred HHHHHHCCC----CEEEEEEECC T ss_conf 999985399----8499999589 No 81 >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Probab=96.94 E-value=0.0028 Score=39.49 Aligned_cols=104 Identities=16% Similarity=0.089 Sum_probs=63.2 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|+|..||+|+...... .. . ...++|.|+++...+.|+-.+--.+.+. .+..||.. +- T Consensus 24 ~~~VLDiGcG~G~~~~~~~---~~----~----~~~v~gvD~S~~~i~~a~~~~~~~~~~v--------~~~~~d~~-~l 83 (209) T 2p8j_A 24 DKTVLDCGAGGDLPPLSIF---VE----D----GYKTYGIEISDLQLKKAENFSRENNFKL--------NISKGDIR-KL 83 (209) T ss_dssp CSEEEEESCCSSSCTHHHH---HH----T----TCEEEEEECCHHHHHHHHHHHHHHTCCC--------CEEECCTT-SC T ss_pred CCEEEEEECCCCHHHHHHH---HH----C----CCEEEEEECCHHHHHHHHHHHHCCCCEE--------EEECCEEE-CC T ss_conf 8989997278899999999---85----8----9989999597999999986220357436--------53002022-36 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 98664189998168567653100011123442266665357777477065999999999614665788079997 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674) .|++.+||+|+++-=+ .|=.. + + -..++..+...|+| ||.+.+- T Consensus 84 ~~~~~sfD~I~s~~~l--~h~~~------~-----------------~-~~~~l~~~~r~Lkp----gG~~~i~ 127 (209) T 2p8j_A 84 PFKDESMSFVYSYGTI--FHMRK------N-----------------D-VKEAIDEIKRVLKP----GGLACIN 127 (209) T ss_dssp CSCTTCEEEEEECSCG--GGSCH------H-----------------H-HHHHHHHHHHHEEE----EEEEEEE T ss_pred CCCCCCCCHHHHHHHH--HCCCH------H-----------------H-HHHHHHHHHHHCCC----CEEEEEE T ss_conf 8543423388876678--72884------7-----------------8-99999999987585----8499999 No 82 >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} Probab=96.92 E-value=0.0039 Score=38.53 Aligned_cols=121 Identities=15% Similarity=0.048 Sum_probs=72.2 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) ++.++-++.+|- .+ ++ ..+|+|-+||||.+.....++ . ...++|.|+++..-++|+.++. T Consensus 31 ~~~~~~~l~~l~-----~l---~~-~~rVLDlGCG~G~~~~~La~~-------~----~~~v~gvD~S~~ml~~a~~~~~ 90 (257) T 3f4k_A 31 PEATRKAVSFIN-----EL---TD-DAKIADIGCGTGGQTLFLADY-------V----KGQITGIDLFPDFIEIFNENAV 90 (257) T ss_dssp HHHHHHHHTTSC-----CC---CT-TCEEEEETCTTSHHHHHHHHH-------C----CSEEEEEESCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCC-----CC---CC-CCEEEEECCCCCHHHHHHHHH-------C----CCEEEEEECCHHHHHHHHHHHH T ss_conf 999999998360-----79---99-797999717797999999986-------6----9979999684567788898776 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 80887533456666823475457999866418999816856765310001112344226666535777747706599999 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlq 340 (674) -.|.... -.+..||... -.|++..||+|++.= ...|- + +. .++. T Consensus 91 ~~~~~~~------v~~~~~d~~~-l~~~~~~fD~V~~~~--~l~~~----------------------~---~~--~~l~ 134 (257) T 3f4k_A 91 KANCADR------VKGITGSMDN-LPFQNEELDLIWSEG--AIYNI----------------------G---FE--RGMN 134 (257) T ss_dssp HTTCTTT------EEEEECCTTS-CSSCTTCEEEEEEES--CSCCC----------------------C---HH--HHHH T ss_pred HHHHHCC------HHHHHHHHHH-HHCCCCCCCEEEEHH--HHHHC----------------------C---HH--HHHH T ss_conf 4321000------0111303887-623688521898605--47728----------------------9---89--9999 Q ss_pred HHHHHHCCCCCCCCEEEEECC Q ss_conf 999961466578807999738 Q gi|254780836|r 341 HLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 341 h~i~klk~~~~~ggr~aIV~n 361 (674) .+...||| ||++++..+ T Consensus 135 e~~rvLkp----gG~l~i~~~ 151 (257) T 3f4k_A 135 EWSKYLKK----GGFIAVSEA 151 (257) T ss_dssp HHHTTEEE----EEEEEEEEE T ss_pred HHHHHCCC----CEEEEEEEC T ss_conf 99997085----819999988 No 83 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Probab=96.92 E-value=0.0049 Score=37.89 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=63.5 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674) ++...+|+|..||||.++.... +. + ..+.|.|+++...+.|+.+.--.+... .+..+|.. T Consensus 39 ~~~~~~ILDiGcGtG~~~~~l~----~~----g----~~v~gvD~s~~ml~~a~~~~~~~~~~~--------~~~~~d~~ 98 (252) T 1wzn_A 39 KREVRRVLDLACGTGIPTLELA----ER----G----YEVVGLDLHEEMLRVARRKAKERNLKI--------EFLQGDVL 98 (252) T ss_dssp SSCCCEEEEETCTTCHHHHHHH----HT----T----CEEEEEESCHHHHHHHHHHHHHTTCCC--------EEEESCGG T ss_pred CCCCCEEEEECCCCCHHHHHHH----HC----C----CEEEEEECCHHHHHHHHHHHHHCCCCC--------EEEECCHH T ss_conf 7898989995475869999999----76----9----989999746889999999776428752--------36865542 Q ss_pred CCCCCCCCEEEEEEECCCCCC-CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 799986641899981685676-531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 283 ~~d~~~~~kFD~vlaNPPFg~-~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) .-+ ...+||+|++. |++ .|- . . .....+++++-..|+| ||++.+-+ T Consensus 99 ~l~--~~~~fD~V~~~--~~~~~~~------~-----------------~-~~~~~~l~~~~~~Lkp----gG~li~~~ 145 (252) T 1wzn_A 99 EIA--FKNEFDAVTMF--FSTIMYF------D-----------------E-EDLRKLFSKVAEALKP----GGVFITDF 145 (252) T ss_dssp GCC--CCSCEEEEEEC--SSGGGGS------C-----------------H-HHHHHHHHHHHHHEEE----EEEEEEEE T ss_pred HCC--CCCCCCEEEEE--CCCHHCC------C-----------------H-HHHHHHHHHHHHHCCC----CCEEEEEE T ss_conf 056--67775489996--1511128------8-----------------7-8999999999997697----83899997 No 84 >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Probab=96.91 E-value=0.0048 Score=37.95 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=74.4 Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH Q ss_conf 53681799999999731784011013877640311766540468999999999853100533322550466667889999 Q gi|254780836|r 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674) Q Consensus 176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674) +...++.+.+.+-.| .+.++.+|.|+.||+|..... +.+. + ..+.|.|++++.-+.| T Consensus 4 ~~~~~~~~~~~~~~l-----------~~~~g~rVLD~GCG~G~~~~~----La~~----g----~~v~gvD~S~~~i~~a 60 (203) T 1pjz_A 4 QSEVNKDLQQYWSSL-----------NVVPGARVLVPLCGKSQDMSW----LSGQ----G----YHVVGAELSEAAVERY 60 (203) T ss_dssp CSSSTHHHHHHHHHH-----------CCCTTCEEEETTTCCSHHHHH----HHHH----C----CEEEEEEECHHHHHHH T ss_pred HHHHCHHHHHHHHHC-----------CCCCCCEEEEECCCCCHHHHH----HHHC----C----CEEEEECCCHHHHHHH T ss_conf 345488999999964-----------999999799973789888999----9967----9----8778852659999999 Q ss_pred HHHHHHHCCCCC---CCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 999898088753---34566668--2347545799986641899981685676531000111234422666653577774 Q gi|254780836|r 256 VAGMLIRRLESD---PRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 (674) Q Consensus 256 k~nMli~g~~~d---~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~ 330 (674) +.+.-..+.... .......+ +..+|.+.-+......||.+++.-.|- -+++ T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~------------------------~~~~ 116 (203) T 1pjz_A 61 FTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMI------------------------ALPA 116 (203) T ss_dssp HHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGG------------------------GSCH T ss_pred HHHHCCCCCCCCCCHHHCCCCCEEEEEEEEHHCCCCCCCCCCCEEEEEEEHH------------------------HCCH T ss_conf 9972345532000111100232368998301116632245621799985043------------------------2697 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 770659999999996146657880799973 Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) ++ .-.+++++.+.|+| ||+..++. T Consensus 117 -~~-~~~~~~~~~~~L~p----GG~~~l~~ 140 (203) T 1pjz_A 117 -DM-RERYVQHLEALMPQ----ACSGLLIT 140 (203) T ss_dssp -HH-HHHHHHHHHHHSCS----EEEEEEEE T ss_pred -HH-HHHHHHHHHHHCCC----CCEEEEEE T ss_conf -88-88999999985788----84899999 No 85 >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Probab=96.91 E-value=0.0098 Score=35.91 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=76.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 43899999999986227665753681799999999731784011013877640311766540468999999999853100 Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 (674) Q Consensus 155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~ 234 (674) +...|....+++.. ...+..+++..++- .+....+|+|-.||||.++....+ ..+ T Consensus 13 ~a~~Yd~~~~~~~p----------~~~~~~~~~~~~~~---------~~~~~~~VLDiGcG~G~~~~~l~~----~~~-- 67 (234) T 3dtn_A 13 VSGKYDEQRRKFIP----------CFDDFYGVSVSIAS---------VDTENPDILDLGAGTGLLSAFLME----KYP-- 67 (234) T ss_dssp HHHHHHHHHHHHCT----------THHHHHHHHHHTCC---------CSCSSCEEEEETCTTSHHHHHHHH----HCT-- T ss_pred HHHHHHHHHHHCCC----------CHHHHHHHHHHHHH---------CCCCCCEEEEECCCCCHHHHHHHH----HCC-- T ss_conf 99999999876484----------58999999999843---------569999599981768599999999----889-- Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHH Q ss_conf 53332255046666788999999989808875334566668--2347545799986641899981685676531000111 Q gi|254780836|r 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 (674) Q Consensus 235 ~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v 312 (674) ...+.|.|+++....+|+... .+ ..| ...||...-+ + ..+||.|+++--+. | T Consensus 68 ----~~~v~giD~s~~~l~~A~~~~--~~---------~~~v~~~~~D~~~~~-~-~~~fD~I~~~~~l~--~------- 121 (234) T 3dtn_A 68 ----EATFTLVDMSEKMLEIAKNRF--RG---------NLKVKYIEADYSKYD-F-EEKYDMVVSALSIH--H------- 121 (234) T ss_dssp ----TCEEEEEESCHHHHHHHHHHT--CS---------CTTEEEEESCTTTCC-C-CSCEEEEEEESCGG--G------- T ss_pred ----CCEEEEEECCHHHHHHHHHHH--HC---------CCCEEEEEEECCCCC-C-CCCHHHHHHHHHHH--C------- T ss_conf ----968999958504578999863--02---------776247742001345-4-45513455577787--0------- Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 23442266665357777477065999999999614665788079997 Q gi|254780836|r 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674) Q Consensus 313 ~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674) +|+. + -..++.++...|+| ||++.+. T Consensus 122 ---------------l~~~-~-~~~~l~~~~~~Lkp----gG~~i~~ 147 (234) T 3dtn_A 122 ---------------LEDE-D-KKELYKRSYSILKE----SGIFINA 147 (234) T ss_dssp ---------------SCHH-H-HHHHHHHHHHHEEE----EEEEEEE T ss_pred ---------------CCHH-H-HHHHHHHHHHHCCC----CEEEEEE T ss_conf ---------------8938-8-99879999976589----8099999 No 86 >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Probab=96.91 E-value=0.015 Score=34.68 Aligned_cols=146 Identities=15% Similarity=0.138 Sum_probs=78.7 Q ss_pred HHHHHHHHHHHHHCC---CCCCCCCCHHHHHHH-HHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 899999999986227---665753681799999-9997317840110138776403117665404689999999998531 Q gi|254780836|r 157 NIYEHLIRRFGSEVS---EGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 (674) Q Consensus 157 ~iyE~LIrkFae~~~---~~aGeffTPR~Vi~L-mv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~ 232 (674) ..|-.+-++|+.... .-...+ .|.....+ ++..| .|| .+|+|-+||||.+.... .+ T Consensus 9 ~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l----------~pg--~rVLDvGCGtG~~a~~L----a~--- 68 (226) T 3m33_A 9 ESYDRLARELGGYRHPWARVLSGP-DPELTFDLWLSRLL----------TPQ--TRVLEAGCGHGPDAARF----GP--- 68 (226) T ss_dssp HHHHHHHHHHTTTSCCSCCEESSS-CTTHHHHHHHHHHC----------CTT--CEEEEESCTTSHHHHHH----GG--- T ss_pred HHHHHHHHHHCCCCCHHHHHCCCC-CHHHHHHHHHHHHC----------CCC--CEEEEECCCCCHHHHHH----HC--- T ss_conf 999999987266535366750598-86799999999518----------999--97999884658645777----51--- Q ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEECCCCCCCCCCCHHH Q ss_conf 0053332255046666788999999989808875334566668234754579998-664189998168567653100011 Q gi|254780836|r 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDA 311 (674) Q Consensus 233 ~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~-~~~kFD~vlaNPPFg~~Wk~~~~~ 311 (674) . . ..+.|.|+++..-++|+.+.- + .++..++....-.+ .+..||+|++|+-. . T Consensus 69 ~-g----~~V~giD~S~~mi~~Ar~~~~--~----------~~~~~~~~~~~lp~~~~~~FD~V~s~~~~--~------- 122 (226) T 3m33_A 69 Q-A----ARWAAYDFSPELLKLARANAP--H----------ADVYEWNGKGELPAGLGAPFGLIVSRRGP--T------- 122 (226) T ss_dssp G-S----SEEEEEESCHHHHHHHHHHCT--T----------SEEEECCSCSSCCTTCCCCEEEEEEESCC--S------- T ss_pred C-C----CEEEECCCCHHHHHHHHHHCC--C----------CCEEEEECCCCCCCCCCCCEEEEEECCCH--H------- T ss_conf 6-8----689965799999999998589--9----------97899746667988789964699976899--9------- Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 123442266665357777477065999999999614665788079997389713477644326899999988494 Q gi|254780836|r 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 (674) Q Consensus 312 v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ 386 (674) .+++.+...||| ||++.++.+... ...+++.+.+..+ T Consensus 123 -------------------------~~l~ei~rvLkP----GG~l~~~~~~~~---------~~~~~~~l~~~~~ 159 (226) T 3m33_A 123 -------------------------SVILRLPELAAP----DAHFLYVGPRLN---------VPEVPERLAAVGW 159 (226) T ss_dssp -------------------------GGGGGHHHHEEE----EEEEEEEESSSC---------CTHHHHHHHHTTC T ss_pred -------------------------HHHHHHHHHCCC----CCEEEEEECCCC---------CHHHHHHHHHCCC T ss_conf -------------------------999999998197----818999967877---------1678998754442 No 87 >1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=96.91 E-value=0.0033 Score=38.99 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=71.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH----HHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHH Q ss_conf 611443899999999986227665753681799----9999997317840110138776403117665404689999999 Q gi|254780836|r 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV----VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 (674) Q Consensus 151 ~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~V----i~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~ 226 (674) +.+.|..+|+..-.++..-. -+++.+ ++++..+ .|+ .+|+|-.||||.|+... T Consensus 9 ~~~~~~~~Fd~~a~~Yd~~~-------~~~~~~~~~~~~~~~~~-----------~~~--~~vLDiGcGtG~~~~~l--- 65 (219) T 1vlm_A 9 HHHHMWHIFERFVNEYERWF-------LVHRFAYLSELQAVKCL-----------LPE--GRGVEIGVGTGRFAVPL--- 65 (219) T ss_dssp ---CTTHHHHHTHHHHHHHH-------HHTHHHHHHHHHHHHHH-----------CCS--SCEEEETCTTSTTHHHH--- T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC-----------CCC--CEEEEECCCCCHHHHHH--- T ss_conf 03599999999999999998-------87589999999999723-----------899--90999858677999977--- Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC Q ss_conf 99853100533322550466667889999999898088753345666682347545799986641899981685676531 Q gi|254780836|r 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 (674) Q Consensus 227 i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk 306 (674) . ..+|.|+++..-+.|+.+ ++. ...+|. .+-.+++.+||+|+++= ...|- T Consensus 66 -------~------~~~giD~s~~~i~~a~~~----~i~----------~~~~d~-~~l~~~~~sfD~V~~~~--vl~~~ 115 (219) T 1vlm_A 66 -------K------IKIGVEPSERMAEIARKR----GVF----------VLKGTA-ENLPLKDESFDFALMVT--TICFV 115 (219) T ss_dssp -------T------CCEEEESCHHHHHHHHHT----TCE----------EEECBT-TBCCSCTTCEEEEEEES--CGGGS T ss_pred -------H------HEEEEECCHHHHHHHHHC----CCE----------EEECCH-HHCCCCCCCCCEECCCC--CHHHH T ss_conf -------5------869994999999999986----998----------998777-87899878733203132--01553 Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 0001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 307 ~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .+. ..+|+.+..-|+| ||++.+..+ T Consensus 116 ~d~--------------------------~~~l~e~~r~Lkp----gG~l~i~~~ 140 (219) T 1vlm_A 116 DDP--------------------------ERALKEAYRILKK----GGYLIVGIV 140 (219) T ss_dssp SCH--------------------------HHHHHHHHHHEEE----EEEEEEEEE T ss_pred CCH--------------------------HHHHHHHHHHCCC----CCEEEEEEC T ss_conf 489--------------------------9999999998586----828999976 No 88 >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334} Probab=96.90 E-value=0.0072 Score=36.77 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=48.8 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH------HHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 6403117665404689999999998531005333225504666678------8999999989808875334566668234 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE------THAVCVAGMLIRRLESDPRRDLSKNIQQ 278 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~------tyaIak~nMli~g~~~d~~~~~~~NI~~ 278 (674) ++.+|.|-.||||++.....+.+ ++ ..++.|.|+++. +...|+.++-=.+.... -.+.. T Consensus 43 pG~rVLDiGCG~G~~t~~la~~~---g~------~~~V~gvD~s~~~~~~~~~l~~A~~~~~~~~~~~~------i~~~~ 107 (275) T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQV---GS------SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR------LTVHF 107 (275) T ss_dssp TTCEEEEESCTTSHHHHHHHHHH---CT------TCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGG------EEEEC T ss_pred CCCEEEEECCCCCHHHHHHHHHH---CC------CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC------CCEEH T ss_conf 86989996653885789999983---87------77523476777776666899999999885577774------01020 Q ss_pred CCCCCCC--CCCCCEEEEEEECC Q ss_conf 7545799--98664189998168 Q gi|254780836|r 279 GSTLSKD--LFTGKRFHYCLSNP 299 (674) Q Consensus 279 GdTL~~d--~~~~~kFD~vlaNP 299 (674) +|....+ .+++.+||.|+++= T Consensus 108 ~d~~~~~~lp~~~~sFD~V~~~~ 130 (275) T 3bkx_A 108 NTNLSDDLGPIADQHFDRVVLAH 130 (275) T ss_dssp SCCTTTCCGGGTTCCCSEEEEES T ss_pred HHHHHHCCCCCCCCCCCEEEEEE T ss_conf 01544024764457626897801 No 89 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Probab=96.88 E-value=0.008 Score=36.47 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=62.5 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) +|+|-.||+|.+... +... ...++|.|+++....+|+.+.-..+.+.. ....|-... . T Consensus 123 ~vLDiGcG~G~~~~~----la~~--------g~~v~gvD~s~~~i~~a~~~~~~~~~~~~--------~~~~d~~~~--~ 180 (286) T 3m70_A 123 KVLDLGCGQGRNSLY----LSLL--------GYDVTSWDHNENSIAFLNETKEKENLNIS--------TALYDINAA--N 180 (286) T ss_dssp EEEEESCTTCHHHHH----HHHT--------TCEEEEEESCHHHHHHHHHHHHHTTCCEE--------EEECCGGGC--C T ss_pred EEEEECCCCCHHHHH----HHHC--------CCEEEEEECCHHHHHHHHHHHHHCCCCCE--------EEECHHHHH--C T ss_conf 799983779899999----9858--------99799998988999999986542266202--------444002211--0 Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 66418999816856765310001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) ...+||+|+++--+.- +|+. + --.++..+...|++ ||++.++.. T Consensus 181 ~~~~fD~I~~~~~l~~------------------------l~~~-~-~~~~l~~~~~~Lkp----gG~l~i~~~ 224 (286) T 3m70_A 181 IQENYDFIVSTVVFMF------------------------LNRE-R-VPSIIKNMKEHTNV----GGYNLIVAA 224 (286) T ss_dssp CCSCEEEEEECSSGGG------------------------SCGG-G-HHHHHHHHHHTEEE----EEEEEEEEE T ss_pred CCCCCCEEEEEEEEEC------------------------CCHH-H-HHHHHHHHHHHCCC----CEEEEEEEE T ss_conf 1356757878607763------------------------8878-9-99999999997298----839999980 No 90 >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Probab=96.87 E-value=0.025 Score=33.31 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=45.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-.||+|.+..... . . + ...+.|.++++...+.|+.. ..... .-+...+|-. +-. T Consensus 44 ~~iLDiGCG~G~~~~~L~----~---~-g---~~~v~giD~s~~~i~~~~~~--~~~~~-------~~~~~~~D~~-~l~ 102 (215) T 2pxx_A 44 DRILVLGCGNSALSYELF----L---G-G---FPNVTSVDYSSVVVAAMQAC--YAHVP-------QLRWETMDVR-KLD 102 (215) T ss_dssp CCEEEETCTTCSHHHHHH----H---T-T---CCCEEEEESCHHHHHHHHHH--TTTCT-------TCEEEECCTT-SCC T ss_pred CEEEEECCCCCHHHHHHH----H---C-C---CCEEEEEECCHHHHHHHHHH--HCCCC-------EEEEECCCCC-CCC T ss_conf 989996377779999999----8---4-8---98399982762566799998--34786-------3543214544-577 Q ss_pred CCCCEEEEEEECCCC Q ss_conf 866418999816856 Q gi|254780836|r 287 FTGKRFHYCLSNPPF 301 (674) Q Consensus 287 ~~~~kFD~vlaNPPF 301 (674) +++..||+|+++--+ T Consensus 103 ~~~~sFD~Vi~~~~l 117 (215) T 2pxx_A 103 FPSASFDVVLEKGTL 117 (215) T ss_dssp SCSSCEEEEEEESHH T ss_pred CCCCCEEEEEECCCH T ss_conf 899977899999745 No 91 >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Probab=96.86 E-value=0.017 Score=34.42 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=63.3 Q ss_pred CCCCCCCCHHH-----HHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC Q ss_conf 66575368179-----9999999731784011013877640311766540468999999999853100533322550466 Q gi|254780836|r 172 EGAEDFMTPRD-----VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 (674) Q Consensus 172 ~~aGeffTPR~-----Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE 246 (674) +++.=||-|+. +.-++++.. ++ .+|+|+.||||.. +..|.++.+. ..++..| T Consensus 22 ~~~~vFYNp~~~~nRDlsv~~~~~~----------~~---~~iLD~~sasG~r---~iRya~E~~~-------~~V~~nD 78 (378) T 2dul_A 22 YDSPVFYNPRMALNRDIVVVLLNIL----------NP---KIVLDALSATGIR---GIRFALETPA-------EEVWLND 78 (378) T ss_dssp ---CCCCCGGGHHHHHHHHHHHHHH----------CC---SEEEESSCTTSHH---HHHHHHHSSC-------SEEEEEE T ss_pred CCCCEECCHHHHHHHHHHHHHHHHH----------CC---CEEEECCCCCHHH---HHHHHHHCCC-------CEEEEEE T ss_conf 6686040866764316999999982----------99---9899978872299---9999985899-------8899996 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCC------CC--CCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 66788999999989808875334566------66--823475457999866418999816856765 Q gi|254780836|r 247 LEPETHAVCVAGMLIRRLESDPRRDL------SK--NIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 247 in~~tyaIak~nMli~g~~~d~~~~~------~~--NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) +|+.+..+.+.|+-+.++........ .. .+..+|...--.-...+||+|--+| ||.. T Consensus 79 i~~~A~~~i~~N~~~N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~~DvIDiDP-fGsp 143 (378) T 2dul_A 79 ISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-FGSP 143 (378) T ss_dssp SCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-SSCC T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEECCCC-CCCH T ss_conf 9989999999999970865334333433224554367521127889874478774331389-9981 No 92 >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Probab=96.85 E-value=0.0067 Score=37.00 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=86.0 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) |-||---..+-+.+.++ .|.++.+|+|-||+.||=-+...+.+. ....++..|+++.-..+ T Consensus 81 G~~yiQd~sS~l~~~~L----------~~~~g~~VLDlCAAPGGKt~~la~~l~---------~~g~l~and~~~~R~~~ 141 (464) T 3m6w_A 81 GLYYIQEPSAQAVGVLL----------DPKPGERVLDLAAAPGGKTTHLAARMG---------GKGLLLANEVDGKRVRG 141 (464) T ss_dssp TSEEECCTTTHHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHTT---------TCSEEEEECSCHHHHHH T ss_pred CEEEEECHHHHHHHHHC----------CCCCCCEEEEECCCCCCHHHHHHHHHH---------CCCEEEECCCCHHHHHH T ss_conf 84999488999999972----------999999798836587655999998853---------58357622431788888 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCC--CCCC-CC Q ss_conf 99998980887533456666823475457999866418999816856765--3100011123442266665--3577-77 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGR--FGPG-LP 329 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~R--f~~g-lP 329 (674) .+.|+--.|.+.. |...|.-.-......+||.||..+|-+-+ |.++ .+.+ +... +- T Consensus 142 l~~nl~r~g~~~~--------v~~~d~~~l~~~~~~~fD~ILvDaPCSG~G~~rk~-----------p~~~~~~~~~~~~ 202 (464) T 3m6w_A 142 LLENVERWGAPLA--------VTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKD-----------REAARHWGPSAPK 202 (464) T ss_dssp HHHHHHHHCCCCE--------EECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTC-----------TTSGGGCCTTHHH T ss_pred HHHHHHHHCCCEE--------EEECCHHHHHCCCCCCCCEEEECCCCCCCCCCCCC-----------CHHHHCCCHHHHH T ss_conf 9888886188616--------87232243320466644379844876667632338-----------0242205877899 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE Q ss_conf 4770659999999996146657880799973897134776443268999999884946 Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 (674) Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i 387 (674) .-+.-|.--|.+.+..|++ ||+++-.. -+++. .-+|..|+..|=++.-+ T Consensus 203 ~l~~~Q~~iL~~A~~~Lkp----GG~LVYST--CS~~~---eENE~vV~~~L~~~~~~ 251 (464) T 3m6w_A 203 RMAEVQKALLAQASRLLGP----GGVLVYST--CTFAP---EENEGVVAHFLKAHPEF 251 (464) T ss_dssp HHHHHHHHHHHHHHTTEEE----EEEEEEEE--SCCCG---GGTHHHHHHHHHHCTTE T ss_pred HHHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCH---HHHHHHHHHHHHHCCCC T ss_conf 9999999999999987188----98899996--99986---87799999999869997 No 93 >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A Probab=96.85 E-value=0.026 Score=33.19 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=86.9 Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999 Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) +-|+ =.+|-+.++- .. +.+ .+.++.+|+|-+||||++.+...+.+. . ...+||.|+++...+.++. T Consensus 51 w~p~-rskl~a~i~~-~l-~~l--~i~pG~~VLDlG~G~G~~~~~la~~vg----~-----~G~V~avD~s~~~l~~l~~ 116 (227) T 1g8a_A 51 WNPN-RSKLGAAIMN-GL-KNF--PIKPGKSVLYLGIASGTTASHVSDIVG----W-----EGKIFGIEFSPRVLRELVP 116 (227) T ss_dssp CCTT-TCHHHHHHHT-TC-CCC--CCCTTCEEEEETTTSTTHHHHHHHHHC----T-----TSEEEEEESCHHHHHHHHH T ss_pred ECCC-HHHHHHHHHC-CH-HHC--CCCCCCEEEEEECCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHH T ss_conf 6785-3689999970-35-316--989999999971787889999999848----9-----9669999899999999998 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH Q ss_conf 989808875334566668234754--579998664189998168567653100011123442266665357777477065 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdT--L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~ 335 (674) +.--++.. +...+|. ..........+|+|.+..+.-- .. T Consensus 117 ~~~~~~ni---------~~v~~da~~~~~~~~~~~~vd~v~~~~~~~~------------------------------~~ 157 (227) T 1g8a_A 117 IVEERRNI---------VPILGDATKPEEYRALVPKVDVIFEDVAQPT------------------------------QA 157 (227) T ss_dssp HHSSCTTE---------EEEECCTTCGGGGTTTCCCEEEEEECCCSTT------------------------------HH T ss_pred HHHHCCCC---------EEEEEECCCHHHCCCCCCEEEEEEEEECCCC------------------------------CH T ss_conf 78766983---------4999876794465445671999997600054------------------------------06 Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHH---HHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEEEEEE Q ss_conf 9999999996146657880799973897134776443268---99999988494-6888317677655788616999994 Q gi|254780836|r 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES---EIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWILS 411 (674) Q Consensus 336 ~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs---~IRk~lie~d~-ieaII~LP~~lFynTgI~t~Iwil~ 411 (674) -.|++++...||+ ||+..++.....-. ... ..+. ++. .+++.++ +.-.+.|.+ |.++ -+++|.. T Consensus 158 ~~~l~~~~~~Lkp----GG~lvi~~k~~~~~-~~~-~~~~~~~~v~-~l~~~gf~~~e~i~L~p---~~~~--H~~vv~r 225 (227) T 1g8a_A 158 KILIDNAEVYLKR----GGYGMIAVKSRSID-VTK-EPEQVFREVE-RELSEYFEVIERLNLEP---YEKD--HALFVVR 225 (227) T ss_dssp HHHHHHHHHHEEE----EEEEEEEEEGGGTC-TTS-CHHHHHHHHH-HHHHTTSEEEEEEECTT---TSSS--EEEEEEE T ss_pred HHHHHHHHHHCCC----CCEEEEEEECCCCC-CCC-CHHHHHHHHH-HHHHCCCEEEEEECCCC---CCCC--EEEEEEE T ss_conf 8999999984599----95999999753377-888-9899999999-99981998999976698---8675--5999999 No 94 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Probab=96.82 E-value=0.013 Score=35.00 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=65.0 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) +.+|.|-.||+|.++.... +..+ ...++|.|+++...+.++.+.--.+... -....||-. +- T Consensus 38 g~rVLDiGcG~G~~~~~la----~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------v~~~~~d~~-~l 99 (276) T 3mgg_A 38 GAKVLEAGCGIGAQTVILA----KNNP------DAEITSIDISPESLEKARENTEKNGIKN-------VKFLQANIF-SL 99 (276) T ss_dssp TCEEEETTCTTSHHHHHHH----HHCT------TSEEEEEESCHHHHHHHHHHHHHTTCCS-------EEEEECCGG-GC T ss_pred CCEEEEECCCCCHHHHHHH----HHCC------CCEEEEEECCHHHHHHHHHHHHHCCCCC-------CCEEECCHH-HC T ss_conf 9989995585889999999----8799------9789999795676322221122115566-------421533523-20 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 986641899981685676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) .++...||.|+++=-+ .|= | |. ..+|+.+-.-||| ||++++.. T Consensus 100 ~~~~~sfD~V~~~~~l--~~~----------------------~---d~-~~~l~~~~rvLkp----gG~l~~~~ 142 (276) T 3mgg_A 100 PFEDSSFDHIFVCFVL--EHL----------------------Q---SP-EEALKSLKKVLKP----GGTITVIE 142 (276) T ss_dssp CSCTTCEEEEEEESCG--GGC----------------------S---CH-HHHHHHHHHHEEE----EEEEEEEE T ss_pred CCCCCCCCCHHHHHHH--HHC----------------------H---HH-HHHHHHHHHHCCC----CCEEEEEE T ss_conf 4777881211111246--313----------------------0---59-9999999997480----85899997 No 95 >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, DNA binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A Probab=96.78 E-value=0.0026 Score=39.61 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=22.1 Q ss_pred CCCCCCCCC-CCCCCCEEEEEEECCCCCC Q ss_conf 234754579-9986641899981685676 Q gi|254780836|r 276 IQQGSTLSK-DLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 276 I~~GdTL~~-d~~~~~kFD~vlaNPPFg~ 303 (674) |..||+|.- ...++..+|.|++-|||++ T Consensus 42 ~~~gDcle~l~~lpd~SVDLIitDPPYn~ 70 (319) T 1eg2_A 42 YDVCDCLDTLAKLPDDSVQLIICDPPYNI 70 (319) T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBC T ss_pred EEECCHHHHHHHCCCCCCCEEEECCCCCC T ss_conf 99652899982286887557998999988 No 96 >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Probab=96.76 E-value=0.0024 Score=39.84 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=68.4 Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 276657536-8179999999973178401101387764031176654046899999999985310053332255046666 Q gi|254780836|r 170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674) Q Consensus 170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674) +|+.-||+| +-..|++-||+.+ .+....+|++--||.|. ||.+. .+.+ -.+++.|++ T Consensus 2 ~n~~LGQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGPG~G~-LT~~L---l~~~--------~~v~aiE~D 59 (285) T 1zq9_A 2 SNTGIGQHILKNPLIINSIIDKA----------ALRPTDVVLEVGPGTGN-MTVKL---LEKA--------KKVVACELD 59 (285) T ss_dssp ------CCEECCHHHHHHHHHHT----------CCCTTCEEEEECCTTST-THHHH---HHHS--------SEEEEEESC T ss_pred CCCCCCCCCCCCHHHHHHHHHHH----------CCCCCCEEEEECCCCHH-HHHHH---HHCC--------CCEEEEEEC T ss_conf 99986846077989999999970----------89999979996897219-99999---8049--------966999987 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 78899999998980887533456666823475457999866418999816856765 Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) +.....-+. ...+... ...-.+..||-|.-|.. .+..|++|.||+++ T Consensus 60 ~~l~~~L~~--~~~~~~~----~~~~~ii~~D~l~~d~~---~~~~vVgNLPYnIs 106 (285) T 1zq9_A 60 PRLVAELHK--RVQGTPV----ASKLQVLVGDVLKTDLP---FFDTCVANLPYQIS 106 (285) T ss_dssp HHHHHHHHH--HHTTSTT----GGGEEEEESCTTTSCCC---CCSEEEEECCGGGH T ss_pred HHHHHHHHH--HHHCCCC----CCCEEEECHHHHHCHHH---HHHHEECCCHHHHH T ss_conf 899999998--7620121----00344540665411055---44321102216568 No 97 >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Probab=96.76 E-value=0.026 Score=33.11 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=95.8 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) |.+ +..+....++-.++ .|.+...|.|.|||.||-.+.....+. . ...++..|++..-... T Consensus 63 G~~-~iQD~sS~l~~~~l---------~~~~g~~vLD~CaapGgKt~~i~~~~~----~-----~~~i~a~d~~~~rl~~ 123 (274) T 3ajd_A 63 GYY-MPQSISSMIPPIVL---------NPREDDFILDMCAAPGGKTTHLAQLMK----N-----KGTIVAVEISKTRTKA 123 (274) T ss_dssp TSE-EECCSGGGHHHHHH---------CCCTTCEEEETTCTTCHHHHHHHHHTT----T-----CSEEEEEESCHHHHHH T ss_pred CEE-EEECHHHHCHHHHC---------CCCCCCEEEEECCCCCHHHHHHHHHHH----C-----CCCEEEECCCHHHHHH T ss_conf 809-99455651589758---------999999799907888688999999853----8-----6833873277889999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 9999898088753345666682347545799---9866418999816856765--3100011123442266665357777 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLP 329 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d---~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674) .+.|+--.|.... .+..+|...-+ .....+||.||..||=+-. |....+ +..+ .+. T Consensus 124 l~~~~~r~g~~~~-------~~~~~d~~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~~~~~-~~~~-----------~~~ 184 (274) T 3ajd_A 124 LKSNINRMGVLNT-------IIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRN-VSEE-----------DIK 184 (274) T ss_dssp HHHHHHHTTCCSE-------EEEESCHHHHHHHHHHTTCCEEEEEEEECCC-------------HH-----------HHT T ss_pred HHHHHHHHHCCCC-------CEECCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHH-HHHH-----------HHH T ss_conf 9887876511441-------00224376766653145445767996388766633131012-1123-----------678 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 4770659999999996146657880799973897134776443268999999884946888317677655 Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 (674) Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy 399 (674) .-+.-|.-.|.|.+.-+++ ||++. -.--+++.- -.|..|++.|=++.-.+ ++.++...+. T Consensus 185 ~l~~~Q~~lL~~a~~~lk~----gG~lv--YsTCSl~~e---ENE~vV~~~L~~~~~~~-l~~~~~~~~~ 244 (274) T 3ajd_A 185 YCSLRQKELIDIGIDLLKK----DGELV--YSTCSMEVE---ENEEVIKYILQKRNDVE-LIIIKANEFK 244 (274) T ss_dssp GGGTCHHHHHHHHHHHEEE----EEEEE--EEESCCCTT---SSHHHHHHHHHHCSSEE-EECCCSTTCT T ss_pred HHHHHHHHHHHHHHHHCCC----CCEEE--EEEECCCHH---HHHHHHHHHHHHCCCEE-EEECCCCCCC T ss_conf 8999999999999974088----83899--973058778---86999999998689839-9706720035 No 98 >1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Probab=96.75 E-value=0.0013 Score=41.55 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=70.9 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) ....+.+.++| . +....+|+|.+||||.++....+ .+ ..+.|.|+++.+.++|+.+.. T Consensus 42 ~~~~~~~~~~l--------~--~~~~~~vLDiGcG~G~~~~~la~--------~g----~~v~gvD~s~~ml~~a~~~~~ 99 (292) T 1xva_A 42 AEYKAWLLGLL--------R--QHGCHRVLDVACGTGVDSIMLVE--------EG----FSVTSVDASDKMLKYALKERW 99 (292) T ss_dssp HHHHHHHHHHH--------H--HTTCCEEEESSCTTSHHHHHHHH--------TT----CEEEEEESCHHHHHHHHHHHH T ss_pred HHHHHHHHHHH--------H--HCCCCEEEEECCCCCHHHHHHHH--------CC----CEEEEEECCHHHHHHHHHHHH T ss_conf 99999999964--------1--31849999904788499999997--------79----969999899999999999998 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-HHHH Q ss_conf 80887533456666823475457--9998664189998168-567653100011123442266665357777477-0659 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRFHYCLSNP-PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSM 336 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~--~d~~~~~kFD~vlaNP-PFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s-dg~~ 336 (674) -++........ .+..++.+. .+.....+||.|++.- -|. + +.. +..+ +-.. T Consensus 100 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~--~------l~~--------------~~~~~~~~~ 154 (292) T 1xva_A 100 NRRKEPAFDKW---VIEEANWLTLDKDVPAGDGFDAVICLGNSFA--H------LPD--------------SKGDQSEHR 154 (292) T ss_dssp HTTTSHHHHTC---EEEECCGGGHHHHSCCTTCEEEEEECSSCGG--G------SCC--------------TTSSSHHHH T ss_pred HCCCCCCCCEE---EEEECCCCCCCCCCCCCCCEEEEEECCCHHH--H------CCC--------------CCCCHHHHH T ss_conf 64446563135---6641110124434566676139999062264--4------588--------------443768999 Q ss_pred HHHHHHHHHHCCCCCCCCEEEE Q ss_conf 9999999961466578807999 Q gi|254780836|r 337 LFLMHLANKLELPPNGGGRAAI 358 (674) Q Consensus 337 lFlqh~i~klk~~~~~ggr~aI 358 (674) .+|+.+...|+| ||+..+ T Consensus 155 ~~l~~~~~~Lkp----gG~li~ 172 (292) T 1xva_A 155 LALKNIASMVRP----GGLLVI 172 (292) T ss_dssp HHHHHHHHTEEE----EEEEEE T ss_pred HHHHHHHHHCCC----CCEEEE T ss_conf 999999987882----828999 No 99 >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.50A {Clostridium acetobutylicum atcc 824} SCOP: c.66.1.43 Probab=96.75 E-value=0.0046 Score=38.05 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=68.8 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) ...+..+.+++- .......+|+|.+||||.++... .+ .+ ..+.|.|+++.+-++|+...- T Consensus 21 ~~~~~~~~~~~~--------~~~~~~~~iLDlGCGtG~~~~~l----~~----~g----~~v~gvD~S~~ml~~a~~~~~ 80 (246) T 1y8c_A 21 KKWSDFIIEKCV--------ENNLVFDDYLDLACGTGNLTENL----CP----KF----KNTWAVDLSQEMLSEAENKFR 80 (246) T ss_dssp HHHHHHHHHHHH--------TTTCCTTEEEEETCTTSTTHHHH----GG----GS----SEEEEECSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH--------HHCCCCCEEEEEECCCCHHHHHH----HH----CC----CEEEEEECCHHHHHHHHHHCC T ss_conf 999999999999--------73899892999807462999999----97----49----959999674999998763112 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 80887533456666823475457999866418999816-85676531000111234422666653577774770659999 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN-PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl 339 (674) -.+.+. ....||-..-+ ...+||+|++- -.|+. ++...+ -..++ T Consensus 81 ~~~~~~--------~~~~~d~~~~~--~~~~fD~V~~~~~~~~~------------------------~~~~~~-~~~~l 125 (246) T 1y8c_A 81 SQGLKP--------RLACQDISNLN--INRKFDLITCCLDSTNY------------------------IIDSDD-LKKYF 125 (246) T ss_dssp HTTCCC--------EEECCCGGGCC--CSCCEEEEEECTTGGGG------------------------CCSHHH-HHHHH T ss_pred CCCCCC--------CCCCCCHHHHH--CCCCCCCCCEEEEEEEC------------------------CCCHHH-HHHHH T ss_conf 234432--------22346677751--03341224121022213------------------------688789-99999 Q ss_pred HHHHHHHCCCCCCCCEEEEEC Q ss_conf 999996146657880799973 Q gi|254780836|r 340 MHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 340 qh~i~klk~~~~~ggr~aIV~ 360 (674) +++-..|+| ||+..+-+ T Consensus 126 ~~i~~~Lkp----gG~li~~~ 142 (246) T 1y8c_A 126 KAVSNHLKE----GGVFIFDI 142 (246) T ss_dssp HHHHTTEEE----EEEEEEEE T ss_pred HHHHHHCCC----CEEEEEEE T ss_conf 999997499----80999994 No 100 >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 Probab=96.73 E-value=0.0017 Score=40.89 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=52.8 Q ss_pred CCCCCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCC Q ss_conf 8234754579-9986641899981685676531000111234422666653577774770659-9999999961466578 Q gi|254780836|r 275 NIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNG 352 (674) Q Consensus 275 NI~~GdTL~~-d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ 352 (674) .|.+||+|.- ...++..+|.|++-||||+. +.+. +. . .+..+| -|+...+..+...... T Consensus 6 ~i~~gD~l~~l~~l~d~sVDlIitdPPY~~~-~~~~-----------d~-----~--~~~~~y~~~~~~~~~e~~rvLk~ 66 (260) T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLS-KADW-----------DS-----F--DSHNEFLAFTYRWIDKVLDKLDK 66 (260) T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSC-SSGG-----------GC-----C--SSHHHHHHHHHHHHHHHHHHEEE T ss_pred EEEECHHHHHHHHCCCCCCCEEEECCCCCCC-CCCC-----------CC-----C--CCHHHHHHHHHHHHHHHHHHHHC T ss_conf 6771319999853867865879989998887-7757-----------77-----8--89999999999999999888715 Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE--EEE-ECCCCCC-----CCCCCCEEEEEEECCC Q ss_conf 807999738971347764432689999998849468--883-1767765-----5788616999994688 Q gi|254780836|r 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIV-ALPTDLF-----FRTNIATYLWILSNRK 414 (674) Q Consensus 353 ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie--aII-~LP~~lF-----ynTgI~t~Iwil~k~K 414 (674) ||. ++..+++. ....+...|.+..+.- -|| ..+.... ++ -.-.++++++|.. T Consensus 67 ~g~--~~~~~~~~-------~~~~~~~~l~~~~~~~~~~iiW~k~~~~~~~~~~~~-~~~e~~~~~~k~~ 126 (260) T 1g60_A 67 DGS--LYIFNTPF-------NCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFS-TGQETILFFSKSK 126 (260) T ss_dssp EEE--EEEEECHH-------HHHHHHHHHHHTTCEEEEEEEECCCCSCCCCSSSCB-CCCEEEEEEESST T ss_pred CCC--CCCCCCCH-------HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCC-CCCCEEEEECCCC T ss_conf 886--32015704-------789999998751443026899941446544466677-6411133103576 No 101 >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold; HET: SAM; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Probab=96.71 E-value=0.028 Score=32.93 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=60.4 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674) ..++.+|+|-.||+||++..+.+.. + ..+.|.+++++..+.|+...--.|.... ..+..+|.. T Consensus 88 l~~g~rVLDIGCG~G~~a~~~a~~~-------g----~~v~gi~is~~q~~~a~~~~~~~gl~~~------~~~~~~d~~ 150 (318) T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERF-------D----VNVIGLTLSKNQHARCEQVLASIDTNRS------RQVLLQGWE 150 (318) T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-------C----CEEEEEESCHHHHHHHHHHHHTSCCSSC------EEEEESCGG T ss_pred CCCCCEEEEECCCCCHHHHHHHHHC-------C----CEEEEEECCHHHHHHHHHHHHHCCCCCH------HHHHHCCHH T ss_conf 9999989897887369999999836-------9----6389998999999999999876387410------016541065 Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEE Q ss_conf 799986641899981685676531000111234422666653577774770659-9999999961466578807999 Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAI 358 (674) Q Consensus 283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aI 358 (674) . ...+||.|++.==|- + +|.. ++ .|++.+-..||| ||+++| T Consensus 151 ~----~~~~fD~i~si~~~e-------------h-----------~~~~---~~~~~f~~~~r~Lkp----GG~l~i 192 (318) T 2fk8_A 151 D----FAEPVDRIVSIEAFE-------------H-----------FGHE---NYDDFFKRCFNIMPA----DGRMTV 192 (318) T ss_dssp G----CCCCCSEEEEESCGG-------------G-----------TCGG---GHHHHHHHHHHHSCT----TCEEEE T ss_pred H----HCCCCCEEEEHHHHH-------------H-----------CCCH---HHHHHHHHHHHHCCC----CCEEEE T ss_conf 5----037876352046888-------------6-----------0531---189999999976386----873999 No 102 >3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413} Probab=96.70 E-value=0.002 Score=40.42 Aligned_cols=115 Identities=15% Similarity=0.043 Sum_probs=67.1 Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999 Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) .-|| +++-+.+.+ ...+..+|.|-.||||.++.. +.+. ...++|.|+++..-+.|+ T Consensus 18 ~~~~-~~~~~~~~l----------~l~~~~~vLDvGcG~G~~~~~----l~~~--------~~~v~gvD~s~~~~~~a~- 73 (261) T 3ege_A 18 PDIR-IVNAIINLL----------NLPKGSVIADIGAGTGGYSVA----LANQ--------GLFVYAVEPSIVMRQQAV- 73 (261) T ss_dssp CCHH-HHHHHHHHH----------CCCTTCEEEEETCTTSHHHHH----HHTT--------TCEEEEECSCHHHHHSSC- T ss_pred CCHH-HHHHHHHHC----------CCCCCCEEEEECCCCCHHHHH----HHHC--------CCEEEEEECCCCCCCCCC- T ss_conf 8889-999999965----------999969999964888899999----9976--------998999974453121000- Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH Q ss_conf 98980887533456666823475457999866418999816856765310001112344226666535777747706599 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~l 337 (674) .. ..-....||-..- .+++..||+|+++-.+- |- | |- -. T Consensus 74 -------~~-----~~~~~~~~d~~~l-~~~~~~fD~v~~~~~l~--~~----------------------~---d~-~~ 112 (261) T 3ege_A 74 -------VH-----PQVEWFTGYAENL-ALPDKSVDGVISILAIH--HF----------------------S---HL-EK 112 (261) T ss_dssp -------CC-----TTEEEECCCTTSC-CSCTTCBSEEEEESCGG--GC----------------------S---SH-HH T ss_pred -------CC-----CCHHHHHHHHHHC-CCCCCCCCEEEECCHHH--HC----------------------C---CH-HH T ss_conf -------12-----2101333445430-25676013775401277--46----------------------8---99-99 Q ss_pred HHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 999999961466578807999738 Q gi|254780836|r 338 FLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 338 Flqh~i~klk~~~~~ggr~aIV~n 361 (674) ++..+...||| ||++.++.+ T Consensus 113 ~l~e~~r~Lkp----gG~l~~~~~ 132 (261) T 3ege_A 113 SFQEMQRIIRD----GTIVLLTFD 132 (261) T ss_dssp HHHHHHHHBCS----SCEEEEEEC T ss_pred HHHHHHHHCCC----CCEEEEEEC T ss_conf 99999998281----858999987 No 103 >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Probab=96.68 E-value=0.005 Score=37.82 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=59.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|-.||+|.++.... .. . ..++|.|+++...+.|+-.. .+.+ -.+..++.. +-. T Consensus 55 ~~VLDiGcG~G~~~~~l~----~~----~----~~v~giD~s~~~l~~a~~~~--~~~~--------~~~~~~~~~-~l~ 111 (242) T 3l8d_A 55 AEVLDVGCGDGYGTYKLS----RT----G----YKAVGVDISEVMIQKGKERG--EGPD--------LSFIKGDLS-SLP 111 (242) T ss_dssp CEEEEETCTTSHHHHHHH----HT----T----CEEEEEESCHHHHHHHHTTT--CBTT--------EEEEECBTT-BCS T ss_pred CEEEEECCCCCHHHHHHH----HC----C----CEEEEEECCHHHHHHHHHCC--CCCC--------CCCCCCCCC-CCC T ss_conf 979996588859999999----64----9----98999979746679987503--4442--------222234435-678 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 866418999816856765310001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) +++.+||+|+++= ...| +|.. ..+++.+...||| ||++.+... T Consensus 112 ~~~~~fD~i~~~~--~l~h----------------------i~d~----~~~l~~~~r~Lkp----gG~~~i~~~ 154 (242) T 3l8d_A 112 FENEQFEAIMAIN--SLEW----------------------TEEP----LRALNEIKRVLKS----DGYACIAIL 154 (242) T ss_dssp SCTTCEEEEEEES--CTTS----------------------SSCH----HHHHHHHHHHEEE----EEEEEEEEE T ss_pred CCCCCEEEEEEEC--HHHH----------------------CCCH----HHHHHHHHHHCCC----CCEEEEEEE T ss_conf 8878568985500--2884----------------------4799----9999999998584----828999996 No 104 >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Probab=96.67 E-value=0.035 Score=32.34 Aligned_cols=208 Identities=11% Similarity=0.015 Sum_probs=94.2 Q ss_pred HHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999986227665--75368179999999973178401101387764031176654046899999999985310053 Q gi|254780836|r 159 YEHLIRRFGSEVSEGA--EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 (674) Q Consensus 159 yE~LIrkFae~~~~~a--GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~ 236 (674) .|+--.++.+ ++.+ .+.-. ...++.+-+++ ......+|+||.||+|=-+. |+.+. + T Consensus 33 ~e~W~~~w~~--~~~~~~~~~~~-p~L~~~~~~~~----------~~~~~~rvL~pgCG~G~da~----~LA~~----G- 90 (252) T 2gb4_A 33 LEDWKEKWVT--RHISFHQEQGH-QLLKKHLDTFL----------KGQSGLRVFFPLCGKAIEMK----WFADR----G- 90 (252) T ss_dssp HHHHHHHHHH--TCCTTCCTTCC-HHHHHHHHHHH----------TTCCSCEEEETTCTTCTHHH----HHHHT----T- T ss_pred HHHHHHHHCC--CCCCCCCCCCC-HHHHHHHHHHC----------CCCCCCEEEEECCCCHHHHH----HHHHC----C- T ss_conf 8899999816--99888678899-89999999860----------88999989998987808899----99848----9- Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCCHHHHHHH Q ss_conf 332255046666788999999989808875334566668234754579998664189998168567-6531000111234 Q gi|254780836|r 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKE 315 (674) Q Consensus 237 ~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg-~~Wk~~~~~v~~e 315 (674) ..++|.|+++..-..++.+.-+...... ...+. ++.+ -.+.+..++++.++...- .++....+.+ T Consensus 91 ---~~V~gvD~S~~Ai~~a~~~~~~~~~~~~-----~~~~~-~~~~--~~~~~~~i~~~~~D~f~~~~~~~~~~d~i--- 156 (252) T 2gb4_A 91 ---HTVVGVEISEIGIREFFAEQNLSYTEEP-----LAEIA-GAKV--FKSSSGSISLYCCSIFDLPRANIGKFDRI--- 156 (252) T ss_dssp ---CEEEEECSCHHHHHHHHHHTTCCEEEEE-----CTTST-TCEE--EEETTSSEEEEESCTTTGGGGCCCCEEEE--- T ss_pred ---CEEEEECCCHHHHHHHHHHCCCCCCCCC-----CCCCC-CCCE--EECCCCCEEEEECCHHHCCCCCCCCCCCE--- T ss_conf ---8489981629999999987545543122-----21003-6420--22147736899854332021123564300--- Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCC--CCCHHHHHHHHHHCCC-EEEE- Q ss_conf 422666653577774770659999999996146657880799973-8971347764--4326899999988494-6888- Q gi|254780836|r 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRA--GSGESEIRRWLLENDL-IEAI- 390 (674) Q Consensus 316 ~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~a--gsGEs~IRk~lie~d~-ieaI- 390 (674) .+.-+...+|+.-.. .+++++.+.|+| ||++.++. +..+-..++. +-.+.+||+.+ ...+ |+.+ T Consensus 157 ----~d~~~~~al~~~~r~--~y~~~l~~~Lkp----gG~lll~~~~~~~~~~~gpPf~vs~~El~~lf-~~~~~I~~le 225 (252) T 2gb4_A 157 ----WDRGALVAINPGDHD--RYADIILSLLRK----EFQYLVAVLSYDPTKHAGPPFYVPSAELKRLF-GTKCSMQCLE 225 (252) T ss_dssp ----EESSSTTTSCGGGHH--HHHHHHHHTEEE----EEEEEEEEEECCTTSCCCSSCCCCHHHHHHHH-TTTEEEEEEE T ss_pred ----EEEEEEEECCHHHHH--HHHHHHHHHHCC----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH-CCCCEEEEEE T ss_conf ----356777635857778--999999986198----85799999315887779999989999999986-7997899976 Q ss_pred -EECCCCCCCCCC---CCEEEEEEECC Q ss_conf -317677655788---61699999468 Q gi|254780836|r 391 -VALPTDLFFRTN---IATYLWILSNR 413 (674) Q Consensus 391 -I~LP~~lFynTg---I~t~Iwil~k~ 413 (674) +..+..-+-+.| +...+|.|+++ T Consensus 226 ~~~~~~~~~~~~gl~~~~e~~~~l~~k 252 (252) T 2gb4_A 226 EVDALEERHKAWGLDYLFEKLYLLTEK 252 (252) T ss_dssp EEECCCGGGTTTTCSCCEEEEEEEEEC T ss_pred EECCCCCCHHHCCCCHHHHEEEEEEEC T ss_conf 522567653342814574306888739 No 105 >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Probab=96.63 E-value=0.004 Score=38.44 Aligned_cols=172 Identities=9% Similarity=0.056 Sum_probs=95.4 Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 276657536-8179999999973178401101387764031176654046899999999985310053332255046666 Q gi|254780836|r 170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674) Q Consensus 170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674) .+++-|||| +-..|++-+|+.+ ......+|.+--||+|.+= .. +.+. . ..+++.|++ T Consensus 4 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~LT-~~---L~~~---~-----~~v~avEiD 61 (244) T 1qam_A 4 KNIKHSQNFITSKHNIDKIMTNI----------RLNEHDNIFEIGSGKGHFT-LE---LVQR---C-----NFVTAIEID 61 (244) T ss_dssp ------CCBCCCHHHHHHHHTTC----------CCCTTCEEEEECCTTSHHH-HH---HHHH---S-----SEEEEECSC T ss_pred CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHH-HH---HHHC---C-----CCEEEEEEC T ss_conf 98888884147999999999956----------7899997999738871999-99---9855---5-----830699853 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 78899999998980887533456666823475457999866418999816856765310001112344226666535777 Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 (674) Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl 328 (674) +......+....- . ..-.|..||-|.-|.-.... ..|++|-||+++= T Consensus 62 ~~l~~~L~~~~~~----~-----~n~~ii~~D~l~~~~~~~~~-~~vv~NLPYnIss----------------------- 108 (244) T 1qam_A 62 HKLCKTTENKLVD----H-----DNFQVLNKDILQFKFPKNQS-YKIFGNIPYNIST----------------------- 108 (244) T ss_dssp HHHHHHHHHHTTT----C-----CSEEEECCCGGGCCCCSSCC-CEEEEECCGGGHH----------------------- T ss_pred HHHHHHHHHHHCC----C-----CCEEEEECHHHCCCCCCCCC-EEEEEECHHHHHH----------------------- T ss_conf 0177999974144----7-----76577300122256544675-4799743055238----------------------- Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCC Q ss_conf 747706599999999961466578807999738971---347764432689999998849468883176776557-8861 Q gi|254780836|r 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP---LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 (674) Q Consensus 329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~---LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn-TgI~ 404 (674) -.|.+++.. .. -.++.+++.--+ | .+..|+ =|-.-++ ..-++-+-..|++.||- -.+- T Consensus 109 --------~Il~~ll~~--~~---~~~~~~mvQkEvA~Rl-~a~~g~-lsv~~~~---~~~~~~~~~V~~~~F~P~PkVd 170 (244) T 1qam_A 109 --------DIIRKIVFD--SI---ADEIYLIVEYGFAKRL-LNTKRS-LALFLMA---EVDISILSMVPREYFHPKPKVN 170 (244) T ss_dssp --------HHHHHHHHS--CC---CSEEEEEEEHHHHHHH-TCTTSH-HHHHHTT---TEEEEEEEEECGGGSBSCCSSC T ss_pred --------HHHHHHCCC--CC---CCEEEEEEEEHHHHHH-HCCCCC-CHHHHHH---HHHCCCCCCCCHHHCCCCCCCE T ss_conf --------999875024--43---0003533100123312-302575-2355323---2232234556802056899833 Q ss_pred EEEEEEECCC Q ss_conf 6999994688 Q gi|254780836|r 405 TYLWILSNRK 414 (674) Q Consensus 405 t~Iwil~k~K 414 (674) .++.-|..++ T Consensus 171 S~vi~l~~k~ 180 (244) T 1qam_A 171 SSLIRLNRKK 180 (244) T ss_dssp EEEEEEEECC T ss_pred EEEEEEEECC T ss_conf 8999999789 No 106 >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Probab=96.62 E-value=0.0062 Score=37.19 Aligned_cols=99 Identities=11% Similarity=0.186 Sum_probs=65.0 Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) -||+| +-..|++-||+.+ ......+|++--||+|.+ |.+ +.+ . .-.+++.|+++... T Consensus 20 LGQnFL~D~~i~~kIv~~~----------~~~~~d~VLEIGPG~G~L-T~~---Ll~---~-----~~~v~aiE~D~~l~ 77 (299) T 2h1r_A 20 QGQHLLKNPGILDKIIYAA----------KIKSSDIVLEIGCGTGNL-TVK---LLP---L-----AKKVITIDIDSRMI 77 (299) T ss_dssp ---CEECCHHHHHHHHHHH----------CCCTTCEEEEECCTTSTT-HHH---HTT---T-----SSEEEEECSCHHHH T ss_pred CCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHH---C-----CCEEEEEECCCHHH T ss_conf 7774378989999999845----------899989899968972799-999---982---3-----99079997770899 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 9999998980887533456666823475457999866418999816856765 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) ...+-.+.-.+.. ...+..||-+..+. .++..|++|.||+++ T Consensus 78 ~~L~e~~~~~~~~-------~~~~i~~D~~~~~~---~~~~~vVgNLPY~IS 119 (299) T 2h1r_A 78 SEVKKRCLYEGYN-------NLEVYEGDAIKTVF---PKFDVCTANIPYKIS 119 (299) T ss_dssp HHHHHHHHHTTCC-------CEEC----CCSSCC---CCCSEEEEECCGGGH T ss_pred HHHHHHHHHCCCC-------CCCCCCCCCCHHHC---CCCCEEECCCCHHHH T ss_conf 9999754321333-------33320344200002---454346147884789 No 107 >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Probab=96.61 E-value=0.0091 Score=36.11 Aligned_cols=166 Identities=12% Similarity=0.152 Sum_probs=90.4 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) .|+..+....++-.+. .|.+..+|.|-|||-||=-+... +... ...++..|+++.-....+ T Consensus 227 ~~~vQD~aSql~~~~l---------~~~~~~~VLD~CAaPGgKt~~la----~~~~------~~~i~a~d~~~~r~~~l~ 287 (429) T 1sqg_A 227 WVTVQDASAQGCMTWL---------APQNGEHILDLCAAPGGKTTHIL----EVAP------EAQVVAVDIDEQRLSRVY 287 (429) T ss_dssp SEEECCHHHHTHHHHH---------CCCTTCEEEEESCTTCHHHHHHH----HHCT------TCEEEEEESSTTTHHHHH T ss_pred EEEECCHHHHHHHHHC---------CCCCCCEEEEECCCCHHHHHHHH----HHCC------CCCCEEECCHHHHHHHHH T ss_conf 4773514545677621---------84214414560688048999999----8622------246562234267788887 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CCCCC Q ss_conf 998980887533456666823475457999866418999816856765--3100011123442266665357---77747 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GLPKI 331 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---glP~~ 331 (674) .|+-..|..... +...+....+.....+||.||..||-+-. |... ++.||.. .+..- T Consensus 288 ~~~~r~g~~~~~-------~~~~~~~~~~~~~~~~fD~VLlDaPCSg~G~~rr~-----------Pd~~~~~~~~~l~~l 349 (429) T 1sqg_A 288 DNLKRLGMKATV-------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH-----------PDIKWLRRDRDIPEL 349 (429) T ss_dssp HHHHHTTCCCEE-------EECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTC-----------TTHHHHCCTTHHHHH T ss_pred HHHHHCCCCCEE-------ECCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCC-----------HHHHHHCCHHHHHHH T ss_conf 778641643111-------02344331010354566459970760468443148-----------135331698889999 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 706599999999961466578807999738971347764432689999998849468 Q gi|254780836|r 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674) Q Consensus 332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674) ..-|..-|.|....++ .||+++-.. -+++.- -+|..|++.|=++.-.+ T Consensus 350 ~~~Q~~iL~~a~~~lk----~gG~LvYsT--CSi~~e---ENe~vV~~fL~~~~~~~ 397 (429) T 1sqg_A 350 AQLQSEILDAIWPHLK----TGGTLVYAT--CSVLPE---ENSLQIKAFLQRTADAE 397 (429) T ss_dssp HHHHHHHHHHHGGGEE----EEEEEEEEE--SCCCGG---GTHHHHHHHHHHCTTCE T ss_pred HHHHHHHHHHHHHHCC----CCCEEEEEE--CCCCHH---HCHHHHHHHHHHCCCCE T ss_conf 9999999999998468----898899997--999846---58999999998589978 No 108 >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Probab=96.60 E-value=0.0023 Score=40.07 Aligned_cols=97 Identities=23% Similarity=0.326 Sum_probs=58.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|..||||.++....+. + ..+.|.|++++..++|+.+. .+ -+...||...-+ T Consensus 42 ~~VLDiGcG~G~~~~~la~~----g--------~~v~giD~S~~~l~~a~~~~----~~--------~~~~~~d~~~~~- 96 (239) T 3bxo_A 42 SSLLDVACGTGTHLEHFTKE----F--------GDTAGLELSEDMLTHARKRL----PD--------ATLHQGDMRDFR- 96 (239) T ss_dssp CEEEEETCTTSHHHHHHHHH----H--------SEEEEEESCHHHHHHHHHHC----TT--------CEEEECCTTTCC- T ss_pred CEEEEEECCCCHHHHHHHHC----C--------CEEEEEECCHHHHHHHHHCC----CC--------CCCCCCCCCCCC- T ss_conf 98999817584999999973----9--------96999969678878886336----54--------422322112677- Q ss_pred CCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE Q ss_conf 866418999816-856765310001112344226666535777747706599999999961466578807999 Q gi|254780836|r 287 FTGKRFHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 (674) Q Consensus 287 ~~~~kFD~vlaN-PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI 358 (674) ...+||.|++- ==++ | ++.. +....+++++.+.||+ ||++.+ T Consensus 97 -~~~~fD~v~~~~~s~~--~----------------------l~~~-~~~~~~l~~~~~~Lk~----gG~li~ 139 (239) T 3bxo_A 97 -LGRKFSAVVSMFSSVG--Y----------------------LKTT-EELGAAVASFAEHLEP----GGVVVV 139 (239) T ss_dssp -CSSCEEEEEECTTGGG--G----------------------CCSH-HHHHHHHHHHHHTEEE----EEEEEE T ss_pred -CCCCCCHHEEEHHHHH--C----------------------CCCH-HHHHHHHHHHHHHCCC----CEEEEE T ss_conf -3314321001011012--0----------------------5998-8999999999986289----809999 No 109 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Probab=96.59 E-value=0.023 Score=33.54 Aligned_cols=156 Identities=12% Similarity=-0.017 Sum_probs=82.4 Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999 Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) +-|+. .+|.+.++-.. . +. ..++.+|+|-.||||.+.+...+.+ + ...+||.|+++...+.++. T Consensus 36 w~p~r-sklaa~i~~~~-~--l~--ikpg~~VLDlG~GtG~~~~~la~~~----~------~g~V~avD~s~~~i~~a~~ 99 (210) T 1nt2_A 36 WVPWR-SKLAAMILKGH-R--LK--LRGDERVLYLGAASGTTVSHLADIV----D------EGIIYAVEYSAKPFEKLLE 99 (210) T ss_dssp CCGGG-CHHHHHHHTSC-C--CC--CCSSCEEEEETCTTSHHHHHHHHHT----T------TSEEEEECCCHHHHHHHHH T ss_pred ECCCH-HHHHHHHHCCC-C--CC--CCCCCEEEEECCCCCHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHH T ss_conf 78625-38999986877-6--68--8998999995688888899999743----6------9859999699999999997 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH Q ss_conf 9898088753345666682347545--79998664189998168567653100011123442266665357777477065 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL--~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~ 335 (674) ..--++.. ....++.- ....+....+|++..+.++-. + . T Consensus 100 ~a~~~~n~---------~~i~~~~~~~~~~~~~~~~v~~i~~~~~~~~-----------------------------~-~ 140 (210) T 1nt2_A 100 LVRERNNI---------IPLLFDASKPWKYSGIVEKVDLIYQDIAQKN-----------------------------Q-I 140 (210) T ss_dssp HHHHCSSE---------EEECSCTTCGGGTTTTCCCEEEEEECCCSTT-----------------------------H-H T ss_pred HHHHCCCE---------EEEEECCCCCCCCCCCCCEEEEEEEECCCHH-----------------------------H-H T ss_conf 78648970---------7999405674112243321358872023615-----------------------------6-8 Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH---HHHCCC-EEEEEECCC Q ss_conf 999999999614665788079997389713477644326899999---988494-688831767 Q gi|254780836|r 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW---LLENDL-IEAIVALPT 395 (674) Q Consensus 336 ~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~---lie~d~-ieaII~LP~ 395 (674) -.|+.++...||+ ||++.|+....+ .+....+.++-+. .++.++ +.-+|.|++ T Consensus 141 ~~~l~~~~~~LKp----GG~l~i~~k~~s---~d~~~~~~~~~~~~~~~l~~gf~i~e~i~L~p 197 (210) T 1nt2_A 141 EILKANAEFFLKE----KGEVVIMVKARS---IDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMP 197 (210) T ss_dssp HHHHHHHHHHEEE----EEEEEEEEEHHH---HCTTSCHHHHHHHHHHHHHTTSEEEEEEECTT T ss_pred HHHHHHHHHHHCC----CCEEEEEEEECC---CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9999999985158----957999998213---67888879999999999987997989985798 No 110 >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransferase domain; 2.90A {Escherichia coli} Probab=96.58 E-value=0.0084 Score=36.35 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=87.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) +|.||---..+-+.|.++.. .|..+..|.|.||+.||=-+.....+ .. ...++..|+++.-.. T Consensus 94 ~G~~yvQD~sS~l~~~~L~~--------~~~~g~~VLDlCAAPGgKT~~la~~~----~~-----~g~lvAnD~~~~R~~ 156 (479) T 2frx_A 94 SGLFYIQEASSMLPVAALFA--------DGNAPQRVMDVAAAPGSKTTQISARM----NN-----EGAILANEFSASRVK 156 (479) T ss_dssp TTSEEECCHHHHHHHHHHTT--------TTCCCSEEEESSCTTSHHHHHHHHHT----TT-----CSEEEEECSSHHHHH T ss_pred CCEEEEECHHHHHHHHHHHH--------CCCCCCEEEEECCCCCHHHHHHHHHH----CC-----CCEEEEEECCHHHHH T ss_conf 83699988899789999752--------78999869994788658999999862----46-----825996536577788 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC---CCC Q ss_conf 99999898088753345666682347545799986641899981685676531000111234422666653577---774 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---LPK 330 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g---lP~ 330 (674) +.+.||--.|+..-. +...|...-+......||.||..+|-+-. +. +. ...+.++.+. +-. T Consensus 157 ~L~~nl~r~g~~nv~-------~~~~d~~~~~~~~~~~fD~ILvDaPCSG~-G~----~r----k~p~~~~~~s~~~~~~ 220 (479) T 2frx_A 157 VLHANISRCGISNVA-------LTHFDGRVFGAAVPEMFDAILLDAPCSGE-GV----VR----KDPDALKNWSPESNQE 220 (479) T ss_dssp HHHHHHHHHTCCSEE-------EECCCSTTHHHHSTTCEEEEEEECCCCCG-GG----GG----TCTTSSSSCCHHHHHH T ss_pred HHHHHHHHCCCCCEE-------EEECCCHHCCCCCCCCCCEEEECCCCCCC-CC----CC----CCHHHHHHCCHHHHHH T ss_conf 999989863897189-------99354001140131016789965985678-64----04----5855776558867789 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHC--CCEEE Q ss_conf 770659999999996146657880799973897134776443268999999884--94688 Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN--DLIEA 389 (674) Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~--d~iea 389 (674) -..-|.--|.|.+.-|++ ||+++-.. -++..- -.|..| +|++++ +.++- T Consensus 221 l~~~Q~~iL~~A~~~Lkp----GG~LvYST--CS~~~e---ENE~vV-~~~L~~~~~~~e~ 271 (479) T 2frx_A 221 IAATQRELIDSAFHALRP----GGTLVYST--CTLNQE---ENEAVC-LWLKETYPDAVEF 271 (479) T ss_dssp HHHHHHHHHHHHHHHEEE----EEEEEEEE--SCCSST---TTHHHH-HHHHHHSTTTEEE T ss_pred HHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCHH---HHHHHH-HHHHHHCCCCEEE T ss_conf 999999999999985788----98899994--899645---329999-9999749884774 No 111 >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=96.53 E-value=0.0043 Score=38.21 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=60.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-.||||.++.... +. + ..+.|.|+++..-.+|+.+ +. .++..++.-.- . T Consensus 56 ~~VLDiGCGtG~~~~~la----~~----g----~~v~giD~S~~ml~~Ak~~----~~---------~~~~~~~~~~l-~ 109 (260) T 2avn_A 56 CRVLDLGGGTGKWSLFLQ----ER----G----FEVVLVDPSKEMLEVAREK----GV---------KNVVEAKAEDL-P 109 (260) T ss_dssp CEEEEETCTTCHHHHHHH----TT----T----CEEEEEESCHHHHHHHHHH----TC---------SCEEECCTTSC-C T ss_pred CEEEEECCCCCHHHHHHH----HC----C----CEEEEEECHHHHHHHHHHH----CC---------CCCCCCHHHHC-C T ss_conf 989998999988899998----61----9----9899993523788999883----63---------22000157508-8 Q ss_pred CCCCEEEEEEE-CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 86641899981-6856765310001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 287 FTGKRFHYCLS-NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 287 ~~~~kFD~vla-NPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) +++.+||.|++ +.-+. |-.+ .-.+++.+...|+| ||.+.+-.+ T Consensus 110 ~~~~~fD~Iis~~~vl~--hi~d--------------------------~~~~l~~i~r~Lk~----gG~li~~~~ 153 (260) T 2avn_A 110 FPSGAFEAVLALGDVLS--YVEN--------------------------KDKAFSEIRRVLVP----DGLLIATVD 153 (260) T ss_dssp SCTTCEEEEEECSSHHH--HCSC--------------------------HHHHHHHHHHHEEE----EEEEEEEEE T ss_pred CCCCCCCHHHHHHHHHH--CCCC--------------------------HHHHHHHHHHHCCC----CCEEEEEEC T ss_conf 86467356550577741--6778--------------------------99999999997398----978999966 No 112 >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Probab=96.51 E-value=0.011 Score=35.50 Aligned_cols=164 Identities=14% Similarity=0.054 Sum_probs=88.8 Q ss_pred CCCCCHHHHHH-HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 75368179999-99997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 175 EDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 175 GeffTPR~Vi~-Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) |.+| ..+.+. +.+.+| .|.++.+|.|.|||-||=-+...+.+ .. ...++.-|+++.-.. T Consensus 98 G~~~-vQD~aS~l~~~~L----------~~~~g~~vLD~CAaPGgKt~~l~~~~----~~-----~g~i~a~d~~~~R~~ 157 (315) T 1ixk_A 98 GLIY-IQEASSMYPPVAL----------DPKPGEIVADMAAAPGGKTSYLAQLM----RN-----DGVIYAFDVDENRLR 157 (315) T ss_dssp TSEE-ECCHHHHHHHHHH----------CCCTTCEEEECCSSCSHHHHHHHHHT----TT-----CSEEEEECSCHHHHH T ss_pred CCEE-EECCHHHHHHHHC----------CCCCCCEEEECCCCCHHHHHHHHHHC----CC-----CCEEEEECCCHHHHH T ss_conf 8689-9362121476615----------89999928895777114466533312----68-----844784107889999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CC Q ss_conf 999998980887533456666823475457999866418999816856765--3100011123442266665357---77 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GL 328 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---gl 328 (674) ..+.|+--.|...- -+...|++.-+. ...+||.||..||=+-+ |... ++.++.. .+ T Consensus 158 ~l~~~l~r~g~~~i-------~~~~~d~~~~~~-~~~~fD~ILlDaPCSg~G~~rr~-----------p~~~~~~~~~~~ 218 (315) T 1ixk_A 158 ETRLNLSRLGVLNV-------ILFHSSSLHIGE-LNVEFDKILLDAPCTGSGTIHKN-----------PERKWNRTMDDI 218 (315) T ss_dssp HHHHHHHHHTCCSE-------EEESSCGGGGGG-GCCCEEEEEEECCTTSTTTCC-------------------CCHHHH T ss_pred HHHHHHHHCCCCCC-------CEECCCCHHCCC-CCCCCCEEEEECCCCCCCEEECC-----------CCCCCCCCHHHH T ss_conf 99999987187652-------111243000012-35654379861762568636024-----------450002776677 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE Q ss_conf 74770659999999996146657880799973897134776443268999999884946 Q gi|254780836|r 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 (674) Q Consensus 329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i 387 (674) -.-+.-|.-.|.|.+..+++ ||+++ -.--+++. .-+|..|++ ++++.-. T Consensus 219 ~~l~~~Q~~iL~~a~~~lk~----gG~lv--YSTCSl~~---~ENE~vV~~-~L~~~~~ 267 (315) T 1ixk_A 219 KFCQGLQMRLLEKGLEVLKP----GGILV--YSTCSLEP---EENEFVIQW-ALDNFDV 267 (315) T ss_dssp HHHHHHHHHHHHHHHHHEEE----EEEEE--EEESCCCG---GGTHHHHHH-HHHHSSE T ss_pred HHHHHHHHHHHHHHHHHCCC----CCEEE--EEEECCCH---HHHHHHHHH-HHHCCCC T ss_conf 78999889999999996689----87898--88743862---411999999-9847997 No 113 >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 Probab=96.50 E-value=0.0034 Score=38.93 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=22.7 Q ss_pred CCCCCCCCC-CCCCCCCEEEEEEECCCCCCC Q ss_conf 823475457-999866418999816856765 Q gi|254780836|r 275 NIQQGSTLS-KDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 275 NI~~GdTL~-~d~~~~~kFD~vlaNPPFg~~ 304 (674) -|.+||+|. -..+++..+|.|++-|||++. T Consensus 16 ~l~~GD~l~~l~~L~~~sVdlIytDPPYn~~ 46 (323) T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQ 46 (323) T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSS T ss_pred EEEECCHHHHHHHCCCCCCCEEEECCCCCCC T ss_conf 6996628999862704897989989998577 No 114 >2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44 Probab=96.46 E-value=0.023 Score=33.54 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=67.0 Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999 Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674) Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674) |++++++.+..+ .|| +|.|..||+|..+.. +.+. . ..+.|.|+++...+.|+.. T Consensus 19 ~~~~~~~~~~~l-----------~pg---rVLDiGcG~G~~~~~----la~~----g----~~v~gvD~s~~~l~~a~~~ 72 (199) T 2i6g_A 19 THSDVLAAAXVV-----------APG---RTLDLGCGNGRNSLY----LAAN----G----YDVTAWDXNPASMANLERI 72 (199) T ss_dssp CCHHHHHHHTTS-----------CSC---EEEEETCTTSHHHHH----HHHT----T----CEEEEEESCHHHHHHHHHH T ss_pred CHHHHHHHHCCC-----------CCC---CEEEECCCCCHHHHH----HHHC----C----CEEEEEECCCHHHHHHHHH T ss_conf 389999984378-----------989---689985889789999----9854----9----9899995871899999986 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH Q ss_conf 89808875334566668234754579998664189998168567653100011123442266665357777477065999 Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 (674) Q Consensus 259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lF 338 (674) .--.++..- ....+| +. +.....+||+|+++--+-- +|+.. --.+ T Consensus 73 ~~~~~~~~~-------~~~~~d-~~-~~~~~~~fD~V~~~~~l~~------------------------~~~~~--~~~~ 117 (199) T 2i6g_A 73 XAAEGLDNL-------QTDLVD-LN-TLTFDGEYDFILSTVVMMF------------------------LEAQT--IPGL 117 (199) T ss_dssp HHHTTCTTE-------EEEECC-TT-TCCCCCCEEEEEEESCGGG------------------------SCTTH--HHHH T ss_pred HHHCCCCCH-------HHHHEE-CC-CCCCCCCEEEEEECCCHHC------------------------CCHHH--HHHH T ss_conf 421376410-------010000-00-2466875319998121450------------------------99889--9999 Q ss_pred HHHHHHHHCCCCCCCCEEEEEC Q ss_conf 9999996146657880799973 Q gi|254780836|r 339 LMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 339 lqh~i~klk~~~~~ggr~aIV~ 360 (674) +..+...|+| ||++.++. T Consensus 118 l~~~~~~L~p----gG~l~i~~ 135 (199) T 2i6g_A 118 IANMQRCTXP----GGYNLIVA 135 (199) T ss_dssp HHHHHHTEEE----EEEEEEEE T ss_pred HHHHHHHCCC----CCEEEEEE T ss_conf 9999998387----93999999 No 115 >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A Probab=96.45 E-value=0.0055 Score=37.54 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=22.6 Q ss_pred CCCCCCCCC-CCCCCCCEEEEEEECCCCCCC Q ss_conf 823475457-999866418999816856765 Q gi|254780836|r 275 NIQQGSTLS-KDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 275 NI~~GdTL~-~d~~~~~kFD~vlaNPPFg~~ 304 (674) .|.+||+|. -..+++..+|.|++-|||+.. T Consensus 23 ~i~~GD~le~lk~L~d~SVDLIitDPPYn~~ 53 (297) T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTL 53 (297) T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCC T ss_pred EEEECCHHHHHHHCCCCCCCEEEECCCCCCC T ss_conf 7994768999962867775979989699888 No 116 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Probab=96.45 E-value=0.022 Score=33.62 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=80.9 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) ..+++++.+++- + .| +.+|.|-.||+|++-.....+. ...++.|.|++++..++|+.++- T Consensus 108 ~~l~~~e~~~~~------l--~~--g~rVLdiGcG~g~~t~~~~a~~----------~g~~V~gIDisp~~~~~Ar~~~~ 167 (298) T 3fpf_A 108 LELLKNEAALGR------F--RR--GERAVFIGGGPLPLTGILLSHV----------YGMRVNVVEIEPDIAELSRKVIE 167 (298) T ss_dssp HHHHHHHHHHTT------C--CT--TCEEEEECCCSSCHHHHHHHHT----------TCCEEEEEESSHHHHHHHHHHHH T ss_pred HHHHHHHHHHCC------C--CC--CCEEEEEECCCHHHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHH T ss_conf 999999998548------9--99--9989996068569999999856----------89989999699999999999798 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 80887533456666823475457999866418999816856765310001112344226666535777747706599999 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlq 340 (674) -.|.+. -.+..||...- +...||.|+..- + + ++. --.+. T Consensus 168 ~~g~~~-------v~~~~gD~~~l---~~~~fDvV~va~-----~------v----------------~~~----~~vl~ 206 (298) T 3fpf_A 168 GLGVDG-------VNVITGDETVI---DGLEFDVLMVAA-----L------A----------------EPK----RRVFR 206 (298) T ss_dssp HHTCCS-------EEEEESCGGGG---GGCCCSEEEECT-----T------C----------------SCH----HHHHH T ss_pred HCCCCE-------EEEEECCCCCC---CCCCCCEEEECC-----C------C----------------CCH----HHHHH T ss_conf 649950-------89997355447---899989899898-----7------7----------------379----99999 Q ss_pred HHHHHHCCCCCCCCEEEEECCCCC--CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCC Q ss_conf 999961466578807999738971--3477644326899999988494688831767765578 Q gi|254780836|r 341 HLANKLELPPNGGGRAAIVLSSSP--LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 (674) Q Consensus 341 h~i~klk~~~~~ggr~aIV~ngs~--LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynT 401 (674) |+...|+| ||++++-..++. ++.... .+..+ .++-...+-.|.+-..|| T Consensus 207 ~l~r~Lkp----GG~lv~r~~~glr~~l~~~v--~~~~~------~gf~~~~~~~P~~~v~ns 257 (298) T 3fpf_A 207 NIHRYVDT----ETRIIYRTYTGMRAILYAPV--SDDDI------TGFRRAGVVLPSGKVNNT 257 (298) T ss_dssp HHHHHCCT----TCEEEEEECCGGGGGSSCCC--CTGGG------TTEEEEEEECCCTTCCCE T ss_pred HHHHHCCC----CEEEEEECCCHHHHHCCCCC--CHHHC------CCEEEEEEECCCCCCCCE T ss_conf 99986698----97999987711787637887--75443------444678998888875315 No 117 >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} Probab=96.43 E-value=0.049 Score=31.35 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=87.8 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) +|..++....++-.+. .|.++.+|.|-|||-||=-+... +.... ...++..|+++.-....+ T Consensus 240 ~~~vQD~aS~l~~~~L---------~~~~g~~VLD~CAaPGGKT~~la----~~~~~-----~~~i~a~d~~~~rl~~l~ 301 (450) T 2yxl_A 240 KIIVQEEASAVASIVL---------DPKPGETVVDLAAAPGGKTTHLA----ELMKN-----KGKIYAFDVDKMRMKRLK 301 (450) T ss_dssp SEEECCHHHHHHHHHH---------CCCTTCEEEESSCTTCHHHHHHH----HHTTT-----CSEEEEECSCHHHHHHHH T ss_pred EEEEECCCHHHHHHHH---------CCCCCCEEEEECCCCCHHHHHHH----HHHHH-----CCCEEECCCCHHHHHHHH T ss_conf 4899643206689873---------45789858750688657999999----98651-----385031125487787789 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CCCC Q ss_conf 998980887533456666823475457999-866418999816856765--3100011123442266665357---7774 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GLPK 330 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~-~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---glP~ 330 (674) -||--.|.... .+...|....+. ....+||.||..+|=+-. |... ++.||.. .+.. T Consensus 302 ~~l~r~g~~~v-------~~~~~d~~~~~~~~~~~~fD~ILvDaPCSg~G~lrr~-----------P~~~~~~~~~~~~~ 363 (450) T 2yxl_A 302 DFVKRMGIKIV-------KPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKN-----------PELRWRLREDKINE 363 (450) T ss_dssp HHHHHTTCCSE-------EEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTS-----------TTHHHHCCTTSHHH T ss_pred HHHHHHCCCCE-------EEEECCCHHCCCCCCCCCCCEEEECCCCCCCCCCCCC-----------HHHHHCCCHHHHHH T ss_conf 99997087631-------6761330106432355657669851888899824458-----------26764378889999 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 7706599999999961466578807999738971347764432689999998849468 Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674) Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674) -..=|.--|.|....+++ ||+++-.. -+++.- -+|..|++.|=++.-++ T Consensus 364 l~~lQ~~iL~~a~~~lkp----gG~lVYsT--CSi~~e---ENe~vV~~fL~~~~~~~ 412 (450) T 2yxl_A 364 MSQLQRELLESAARLVKP----GGRLLYTT--CSIFKE---ENEKNIRWFLNVHPEFK 412 (450) T ss_dssp HHHHHHHHHHHHHTTEEE----EEEEEEEE--SCCCGG---GTHHHHHHHHHHCSSCE T ss_pred HHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCHH---HHHHHHHHHHHHCCCCE T ss_conf 999999999999986388----98899997--999967---77999999998699948 No 118 >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Probab=96.43 E-value=0.023 Score=33.49 Aligned_cols=149 Identities=10% Similarity=0.058 Sum_probs=79.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999998622766575368179999-9999731784011013877640311766540468999999999853100533 Q gi|254780836|r 159 YEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 (674) Q Consensus 159 yE~LIrkFae~~~~~aGeffTPR~Vi~-Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~ 237 (674) |..--+.|... .+++.+-++.++ .+..++ . .+.. ......|+|-.||||.+...-.+.+....+. T Consensus 15 Y~~~f~~~~~~----s~~~~~~~~~~~~~l~~~l-~----~~~~-~~~~~~VLdiGcG~G~~~~~il~~l~~~~~~---- 80 (292) T 2aot_A 15 YVESFRRFLNH----STEHQCMQEFMDKKLPGII-G----RIGD-TKSEIKILSIGGGAGEIDLQILSKVQAQYPG---- 80 (292) T ss_dssp HHHHHHHHHTT----BSHHHHHHHHHHHTHHHHS-S----STTT-TCSEEEEEEETCTTSHHHHHHHHHHHHHSTT---- T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHHHHHH-H----HHCC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCC---- T ss_conf 99999999860----4057999999999999999-9----8516-7999869998797997789999988874478---- Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCC-----CCCCCCCCCCEEEEEEECCCCCCCCCCC Q ss_conf 3225504666678899999998980887533456666823----475-----4579998664189998168567653100 Q gi|254780836|r 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ----QGS-----TLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 (674) Q Consensus 238 ~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~----~Gd-----TL~~d~~~~~kFD~vlaNPPFg~~Wk~~ 308 (674) ..+.+.|.|+++...+.|+..+--... ..|+. .++ ......+...+||+|++.=-+. | T Consensus 81 ~~~~~~~vD~s~~~l~~ak~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~--~--- 147 (292) T 2aot_A 81 VCINNEVVEPSAEQIAKYKELVAKTSN--------LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLY--Y--- 147 (292) T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTCSS--------CTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGG--G--- T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHC--------CCCCEEEECCCCHHHCCCHHHCCCCCCCEEEEEECCHHH--H--- T ss_conf 777599998988999999999887413--------355301102351654044221556789867999768044--3--- Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 01112344226666535777747706599999999961466578807999738 Q gi|254780836|r 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 309 ~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) +| |- -.+|+++...|+| ||.+.|+.+ T Consensus 148 -------------------~~---d~-~~~l~~~~~~Lkp----gG~l~i~~~ 173 (292) T 2aot_A 148 -------------------VK---DI-PATLKFFHSLLGT----NAKMLIIVV 173 (292) T ss_dssp -------------------CS---CH-HHHHHHHHHTEEE----EEEEEEEEE T ss_pred -------------------HH---HH-HHHHHHHHHHCCC----CCEEEEEEE T ss_conf -------------------10---39-9999999997087----969999998 No 119 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Probab=96.37 E-value=0.0058 Score=37.39 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=56.3 Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999 Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674) Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674) |....+..|++.+ ......+|+|..||+|++++.+.... + ...++|.|+++....+|+.+ T Consensus 139 ~~~~~~~~i~~~~----------~l~~~~~~~DiG~G~G~~~~~~a~~~-------~---~~~~~Giei~~~~~~~A~~~ 198 (416) T 1nw3_A 139 TSFDLVAQMIDEI----------KMTDDDLFVDLGSGVGQVVLQVAAAT-------N---CKHHYGVEKADIPAKYAETM 198 (416) T ss_dssp CCHHHHHHHHHHS----------CCCTTCEEEEETCTTSHHHHHHHHHC-------C---CSEEEEEECSHHHHHHHHHH T ss_pred HHHHHHHHHHHHH----------CCCCCCEEEECCCCCCHHHHHHHHHC-------C---CCEEEEEECCHHHHHHHHHH T ss_conf 4099999999970----------89999889966888888999999976-------9---98899997999999999999 Q ss_pred H-------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEEC Q ss_conf 8-------980887533456666823475457999866--418999816 Q gi|254780836|r 259 M-------LIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSN 298 (674) Q Consensus 259 M-------li~g~~~d~~~~~~~NI~~GdTL~~d~~~~--~kFD~vlaN 298 (674) . -..|.... .-.+..||-+..+ +.. ...|+|+.| T Consensus 199 ~~~~~~~~~~~g~~~~-----~v~~~~gD~~~~~-~~~~~~~adVv~~n 241 (416) T 1nw3_A 199 DREFRKWMKWYGKKHA-----EYTLERGDFLSEE-WRERIANTSVIFVN 241 (416) T ss_dssp HHHHHHHHHHHTCCCC-----CEEEEECCTTSHH-HHHHHHHCSEEEEC T ss_pred HHHHHHHHHHHCCCCC-----CEEEEECCCCCCC-CCCCCCCCEEEEEC T ss_conf 9999887776267777-----4599976656774-10026798599998 No 120 >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Probab=96.36 E-value=0.053 Score=31.12 Aligned_cols=78 Identities=18% Similarity=0.028 Sum_probs=46.6 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674) ..++.+|+|-.||.||+...+.+. .+ ..+-|..++++-.+.|+....=.|.... -.+..+|. T Consensus 70 l~~g~rVLDiGCGwG~~a~~~a~~-------~g----~~v~gitlS~~Q~~~a~~~~~~~gl~~~------v~~~~~d~- 131 (302) T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAE-------YD----VNVIGLTLSENQYAHDKAMFDEVDSPRR------KEVRIQGW- 131 (302) T ss_dssp CCTTCEEEEETCTTSHHHHHHHHH-------HC----CEEEEEECCHHHHHHHHHHHHHSCCSSC------EEEEECCG- T ss_pred CCCCCEEEEECCCCCHHHHHHHHH-------CC----CEEEEEECCHHHHHHHHHHHHHHHCCHH------HHHHHCCC- T ss_conf 999898988578853999999998-------69----8389983778899999999987400212------33444043- Q ss_pred CCCCCCCCEEEEEEECCCC Q ss_conf 7999866418999816856 Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 283 ~~d~~~~~kFD~vlaNPPF 301 (674) .+.+.+||.|+|-=-| T Consensus 132 ---~~~~~~fD~ivSie~~ 147 (302) T 3hem_A 132 ---EEFDEPVDRIVSLGAF 147 (302) T ss_dssp ---GGCCCCCSEEEEESCG T ss_pred ---CCCCCCCCEEEEEHHH T ss_conf ---2347886755311568 No 121 >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Probab=96.34 E-value=0.055 Score=31.03 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=70.1 Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999 Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674) Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674) -|+ =++|.+.|+- ..+ .+ ...++.+|+|-.||||.+.+...+.+. ....+||.|+++...+.++.. T Consensus 56 ~p~-rsklaaai~~-~l~-~l--~lkpG~~VLDlG~G~G~~~~~la~~vg---------~~G~V~aVD~s~~~l~~a~~~ 121 (233) T 2ipx_A 56 NPF-RSKLAAAILG-GVD-QI--HIKPGAKVLYLGAASGTTVSHVSDIVG---------PDGLVYAVEFSHRSGRDLINL 121 (233) T ss_dssp CTT-TCHHHHHHHT-TCS-CC--CCCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEECCCHHHHHHHHHH T ss_pred CCC-CCHHHHHHHH-CHH-HC--CCCCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHH T ss_conf 786-1299999984-555-25--999999999965768989999999859---------996799997999999999997 Q ss_pred HHHHCCCCCCCCCCCCCCC--CCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH Q ss_conf 8980887533456666823--47545--7999866418999816856765310001112344226666535777747706 Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQ--QGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674) Q Consensus 259 Mli~g~~~d~~~~~~~NI~--~GdTL--~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674) .--+ .||. .+|.- ....+....||+++++.+.-- + T Consensus 122 a~~~-----------~ni~~i~~d~~~~~~~~~~~~~vd~i~~~~~~~~-----------------------------~- 160 (233) T 2ipx_A 122 AKKR-----------TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPD-----------------------------Q- 160 (233) T ss_dssp HHHC-----------TTEEEECSCTTCGGGGGGGCCCEEEEEECCCCTT-----------------------------H- T ss_pred HHHC-----------CCCCEEEEECCCCHHCCCCCCEEEEEECCCCCCH-----------------------------H- T ss_conf 5514-----------6664289753670111566526888531422651-----------------------------5- Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 59999999996146657880799973 Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) .-.++.++...||+ ||+..|+. T Consensus 161 ~~~~l~~~~r~LKp----GG~lvi~~ 182 (233) T 2ipx_A 161 TRIVALNAHTFLRN----GGHFVISI 182 (233) T ss_dssp HHHHHHHHHHHEEE----EEEEEEEE T ss_pred HHHHHHHHHHHCCC----CCEEEEEE T ss_conf 99999999985689----86799998 No 122 >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413} Probab=96.31 E-value=0.0082 Score=36.41 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=61.3 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674) +.++.+|+|-.||||.++.... +. . ..+.|.|+++...+.|+-++ .. -++..||.. T Consensus 55 ~~~g~~VLDiGcG~G~~~~~la----~~----~----~~v~giD~s~~ml~~a~~~~--~~----------~~~~~~~~~ 110 (279) T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIA----QS----G----AEVLGTDNAATMIEKARQNY--PH----------LHFDVADAR 110 (279) T ss_dssp CCTTCEEEEETCTTSHHHHHHH----HT----T----CEEEEEESCHHHHHHHHHHC--TT----------SCEEECCTT T ss_pred CCCCCEEEEECCCCCHHHHHHH----HC----C----CEEEEEECHHHHHHHHHHHC--CC----------CCEEEHHHC T ss_conf 9996999993585859999999----64----9----98999916388999998616--54----------311100000 Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 79998664189998168567653100011123442266665357777477065999999999614665788079997389 Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) .-+ .+..||+|+++--+. |-.+. -.++..+...|+| ||++++..++ T Consensus 111 ~~~--~~~~fD~v~~~~~l~--~~~d~--------------------------~~~l~~~~~~lkp----gG~~~~~~~~ 156 (279) T 3ccf_A 111 NFR--VDKPLDAVFSNAMLH--WVKEP--------------------------EAAIASIHQALKS----GGRFVAEFGG 156 (279) T ss_dssp TCC--CSSCEEEEEEESCGG--GCSCH--------------------------HHHHHHHHHHEEE----EEEEEEEEEC T ss_pred CCC--CCCCCCEEEEEECCC--CCCCH--------------------------HHHHHHHHHHCCC----CCEEEEEECC T ss_conf 135--676553897752014--56788--------------------------9999999997189----9689999789 No 123 >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Probab=96.24 E-value=0.008 Score=36.46 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=49.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-.||+|.+... ..+ ...++|.++++..-.+|+.+.-..|... ....+|.+..+ T Consensus 107 ~~VLDlGCG~G~l~~~-------~~~------~~~v~gvD~s~~~l~~ar~~~~~~~~~~--------~~~~~d~~~~~- 164 (253) T 3frh_A 107 RRVLDIACGLNPLALY-------ERG------IASVWGCDIHQGLGDVITPFAREKDWDF--------TFALQDVLCAP- 164 (253) T ss_dssp SEEEEETCTTTHHHHH-------HTT------CSEEEEEESBHHHHHHHHHHHHHTTCEE--------EEEECCTTTSC- T ss_pred CEEEEECCCCCHHHHH-------HCC------CCEEEEEECCHHHHHHHHHHHHHCCCCC--------EEEECCHHHCC- T ss_conf 8599967888899999-------768------9838999797999999999999829970--------48855622245- Q ss_pred CCCCEEEEEEECC Q ss_conf 8664189998168 Q gi|254780836|r 287 FTGKRFHYCLSNP 299 (674) Q Consensus 287 ~~~~kFD~vlaNP 299 (674) ....||+|++.- T Consensus 165 -~~~~~D~v~~~~ 176 (253) T 3frh_A 165 -PAEAGDLALIFK 176 (253) T ss_dssp -CCCBCSEEEEES T ss_pred -CCCCCCHHHHHC T ss_conf -776744105424 No 124 >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=96.23 E-value=0.027 Score=33.08 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=59.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|..||+|.++.... +.+ ..++|.|+++...++|+.++ .+. +...++.. ... T Consensus 48 ~~vLDlGCG~G~~~~~l~----~~~--------~~v~giD~s~~~i~~a~~~~--~~~----------~~~~~~~~-~~~ 102 (195) T 3cgg_A 48 AKILDAGCGQGRIGGYLS----KQG--------HDVLGTDLDPILIDYAKQDF--PEA----------RWVVGDLS-VDQ 102 (195) T ss_dssp CEEEEETCTTTHHHHHHH----HTT--------CEEEEEESCHHHHHHHHHHC--TTS----------EEEECCTT-TSC T ss_pred CEEEEECCCCCHHHHHHH----HCC--------CEEEEEECCHHHHHHHHHHC--CCC----------CEEECCCC-CCC T ss_conf 989997688859999999----769--------98999979727789999730--254----------31102433-565 Q ss_pred CCCCEEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 8664189998168-5676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 287 FTGKRFHYCLSNP-PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 287 ~~~~kFD~vlaNP-PFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) +++..||.|+++= .+.. +..+ ..-.+|..+...||| ||++.+.+ T Consensus 103 ~~~~~fD~v~~~~~~~~~--------~~~~------------------~~~~~l~~~~r~Lkp----GG~~v~~~ 147 (195) T 3cgg_A 103 ISETDFDLIVSAGNVMGF--------LAED------------------GREPALANIHRALGA----DGRAVIGF 147 (195) T ss_dssp CCCCCEEEEEECCCCGGG--------SCHH------------------HHHHHHHHHHHHEEE----EEEEEEEE T ss_pred CCCCCCCEEEECCHHHHC--------CCHH------------------HHHHHHHHHHHHCCC----CCEEEEEE T ss_conf 666532589982303444--------8857------------------899999999998786----85899998 No 125 >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8} Probab=96.18 E-value=0.011 Score=35.59 Aligned_cols=96 Identities=20% Similarity=0.165 Sum_probs=60.5 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) +.+|+|-.||+|.++. .+ + ...++|.|+++....+|+.++ .+. ....+|. .+- T Consensus 37 g~~iLDiGCG~G~~~~-------~l-~------~~~v~g~D~s~~~l~~A~~~~----~~~--------~~~~~~~-~~l 89 (211) T 2gs9_A 37 GESLLEVGAGTGYWLR-------RL-P------YPQKVGVEPSEAMLAVGRRRA----PEA--------TWVRAWG-EAL 89 (211) T ss_dssp CSEEEEETCTTCHHHH-------HC-C------CSEEEEECCCHHHHHHHHHHC----TTS--------EEECCCT-TSC T ss_pred CCEEEEECCCCHHHHH-------HC-C------CCCEEEEECCHHHHHHHHHCC----CCC--------EEEECCH-HCC T ss_conf 9989998998609999-------73-7------686899838999999876336----652--------0343423-117 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 986641899981685676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) .+++..||.|+++=-+ .|- | |- -.+|..+...||| ||++.+.. T Consensus 90 ~~~~~~fD~V~~~~~l--~h~----------------------~---d~-~~~l~~i~r~LkP----gG~l~l~~ 132 (211) T 2gs9_A 90 PFPGESFDVVLLFTTL--EFV----------------------E---DV-ERVLLEARRVLRP----GGALVVGV 132 (211) T ss_dssp CSCSSCEEEEEEESCT--TTC----------------------S---CH-HHHHHHHHHHEEE----EEEEEEEE T ss_pred CCCCCCCCHHHHHHHH--HHC----------------------C---CH-HHHHHHHHHHCCC----CCEEEEEE T ss_conf 8875642279875478--724----------------------8---99-9999999998388----92899997 No 126 >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Probab=96.18 E-value=0.066 Score=30.48 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=67.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-.||+|.++.. +.+. + ..+.|.|+++..-.+|+...-.... ..+-..-| T Consensus 45 ~~VLDvGCG~G~~~~~----l~~~----g----~~v~gvD~s~~~i~~a~~~~~~~~~-------------~~~~~~~~- 98 (211) T 3e23_A 45 AKILELGCGAGYQAEA----MLAA----G----FDVDATDGSPELAAEASRRLGRPVR-------------TMLFHQLD- 98 (211) T ss_dssp CEEEESSCTTSHHHHH----HHHT----T----CEEEEEESCHHHHHHHHHHHTSCCE-------------ECCGGGCC- T ss_pred CEEEEECCCCCHHHHH----HHHC----C----CCEEEEECCHHHHHHHHHHCCCCCE-------------EEEEECCC- T ss_conf 9899986888699999----9975----9----9232341469999999986088620-------------11220255- Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCC Q ss_conf 866418999816856765310001112344226666535777747706599999999961466578807999738-9713 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPL 365 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n-gs~L 365 (674) ....||+|+++==+ .| +|+. + ...+++++...|+| ||++.+-.. +... T Consensus 99 -~~~~fD~I~~~~~l--~~----------------------l~~~-~-~~~~~~~~~~~Lkp----GG~l~~~~~~~~~~ 147 (211) T 3e23_A 99 -AIDAYDAVWAHACL--LH----------------------VPRD-E-LADVLKLIWRALKP----GGLFYASYKSGEGE 147 (211) T ss_dssp -CCSCEEEEEECSCG--GG----------------------SCHH-H-HHHHHHHHHHHEEE----EEEEEEEEECCSSC T ss_pred -CCCCCCHHHHHHHH--HC----------------------CCHH-H-HHHHHHHHHHHCCC----CCEEEEEEECCCCC T ss_conf -32233136544346--51----------------------8978-9-99999999997396----82899997658776 Q ss_pred -CC--CC--CCCCHHHHHHHHHHCCC Q ss_conf -47--76--44326899999988494 Q gi|254780836|r 366 -FN--GR--AGSGESEIRRWLLENDL 386 (674) Q Consensus 366 -F~--G~--agsGEs~IRk~lie~d~ 386 (674) .. |. ..-.+..+++.+-+.+. T Consensus 148 ~~~~~~~~~~~~~~~~l~~~l~~~g~ 173 (211) T 3e23_A 148 GRDKLARYYNYPSEEWLRARYAEAGT 173 (211) T ss_dssp EECTTSCEECCCCHHHHHHHHHHHCC T ss_pred CCCCCCCEECCCCHHHHHHHHHHCCC T ss_conf 65567873067999999999997799 No 127 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Probab=96.15 E-value=0.0085 Score=36.31 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=58.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-.||||.++.. +.+. ...++|.|+++.....++.+. .. .+...+. .. T Consensus 19 ~~VLDiGcG~G~~~~~----l~~~--------~~~v~gvD~s~~~i~~a~~~~--~~-----------~~~~~~~---~~ 70 (170) T 3i9f_A 19 GVIVDYGCGNGFYCKY----LLEF--------ATKLYCIDINVIALKEVKEKF--DS-----------VITLSDP---KE 70 (170) T ss_dssp EEEEEETCTTCTTHHH----HHTT--------EEEEEEECSCHHHHHHHHHHC--TT-----------SEEESSG---GG T ss_pred CEEEEEECCCCHHHHH----HHHC--------CCEEEEEECCCCCCCEECCCC--EE-----------EEEEECC---CC T ss_conf 9799980899799999----9962--------998999945642010001221--03-----------5532001---23 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) +++..||+|+++--+- |-.+ ...+++.+...|+| ||+++|+. T Consensus 71 l~~~~fD~i~~~~~l~--~~~~--------------------------~~~~l~~i~r~Lkp----gG~l~i~~ 112 (170) T 3i9f_A 71 IPDNSVDFILFANSFH--DMDD--------------------------KQHVISEVKRILKD----DGRVIIID 112 (170) T ss_dssp SCTTCEEEEEEESCST--TCSC--------------------------HHHHHHHHHHHEEE----EEEEEEEE T ss_pred CCCCCEEEEEEEEEEE--CCCC--------------------------HHHHHHHHHHHCCC----CEEEEEEE T ss_conf 7878578999850334--1779--------------------------99999999997587----80999999 No 128 >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Probab=96.14 E-value=0.014 Score=34.98 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=67.6 Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 276657536-8179999999973178401101387764031176654046899999999985310053332255046666 Q gi|254780836|r 170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674) Q Consensus 170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674) ..+.-||+| +-..|++-+|+.+ .+....+|.+--||+|.+ |.+ +.+ .. ..+++.|++ T Consensus 24 pkK~lGQNFL~d~~i~~kIv~~~----------~~~~~d~VlEIGpG~G~L-T~~---Ll~---~~-----~~v~aiEiD 81 (295) T 3gru_A 24 PKKKLGQCFLIDKNFVNKAVESA----------NLTKDDVVLEIGLGKGIL-TEE---LAK---NA-----KKVYVIEID 81 (295) T ss_dssp ------CCEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSHH-HHH---HHH---HS-----SEEEEEESC T ss_pred CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHH---CC-----CCEEEEEEC T ss_conf 88877823028999999999963----------899999599979974699-999---981---68-----966999988 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 78899999998980887533456666823475457999866418999816856765 Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) +......+...--.. .-.|..+|-|.-|. +...++.|++|.||+++ T Consensus 82 ~~l~~~L~~~~~~~~---------n~~ii~~D~l~~d~-~~~~~~~vv~NLPYnIs 127 (295) T 3gru_A 82 KSLEPYANKLKELYN---------NIEIIWGDALKVDL-NKLDFNKVVANLPYQIS 127 (295) T ss_dssp GGGHHHHHHHHHHCS---------SEEEEESCTTTSCG-GGSCCSEEEEECCGGGH T ss_pred HHHHHHHHHHHHHCC---------CEEEEECCCCCCCH-HHCCCCEEEEEEHHHHC T ss_conf 799999997676427---------73688512103771-33375537862026425 No 129 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Probab=96.12 E-value=0.0045 Score=38.10 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=62.1 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) ...+|+|-+||||.+... +.+... ..+.|.|+++.....|+.+.. ... -....+|...- T Consensus 44 ~g~~VLDiGcG~G~~~~~----l~~~g~-------~~v~giD~S~~~i~~a~~~~~----~~~------~~~~~~d~~~l 102 (253) T 3g5l_A 44 NQKTVLDLGCGFGWHCIY----AAEHGA-------KKVLGIDLSERMLTEAKRKTT----SPV------VCYEQKAIEDI 102 (253) T ss_dssp TTCEEEEETCTTCHHHHH----HHHTTC-------SEEEEEESCHHHHHHHHHHCC----CTT------EEEEECCGGGC T ss_pred CCCEEEEECCCCCHHHHH----HHHCCC-------CEEEEEECCCHHHHHHHHHHC----CCC------CCCCCCCCCCC T ss_conf 969899983778499999----996499-------989999485065689987403----444------32222222456 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 998664189998168567653100011123442266665357777477065999999999614665788079997389 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) .+++.+||+|+++=.+. |-.+ . -.++..+...|+| ||++.+..++ T Consensus 103 -~~~~~~fD~V~~~~~l~--~~~d----------------------~----~~~l~~i~r~Lkp----gG~lv~~~~~ 147 (253) T 3g5l_A 103 -AIEPDAYNVVLSSLALH--YIAS----------------------F----DDICKKVYINLKS----SGSFIFSVEH 147 (253) T ss_dssp -CCCTTCEEEEEEESCGG--GCSC----------------------H----HHHHHHHHHHEEE----EEEEEEEEEC T ss_pred -CCCCCCCCCCCCCCEEE--ECCC----------------------H----HHHHHHHHHHCCC----CCEEEEEECC T ss_conf -65675555342111133--1489----------------------9----9999999997488----9489999658 No 130 >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Probab=96.07 E-value=0.017 Score=34.37 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=59.5 Q ss_pred CCCCCCH-HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 5753681-799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 174 AEDFMTP-RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 174 aGeffTP-R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) +|-||-+ +.....|++.+. +. .++ ..|+|=.||+|.|=....+ .. ..++|.|.++.+. T Consensus 267 p~sF~Q~N~~~~~~L~~~v~----~~---~~~--~~vlDLycG~G~fsl~LA~-------~~-----~~V~gvE~~~~av 325 (425) T 2jjq_A 267 PNSFFQTNSYQAVNLVRKVS----EL---VEG--EKILDMYSGVGTFGIYLAK-------RG-----FNVKGFDSNEFAI 325 (425) T ss_dssp TTSCCCSBHHHHHHHHHHHH----HH---CCS--SEEEEETCTTTHHHHHHHH-------TT-----CEEEEEESCHHHH T ss_pred CCHHHHHCHHHHHHHHHHHH----CC---CCC--CEEEECCCCCCHHHHHHHH-------CC-----CEEEEEECCHHHH T ss_conf 77043315576754212222----03---687--7787626786688899874-------28-----5545750468889 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf 999999898088753345666682347545799986641899981685 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPP 300 (674) .-|+.|.-+.+++.... ..++. ......||.|+.+|| T Consensus 326 ~~A~~na~~n~~~~~~~-------~~~~~----~~~~~~~D~vvlDPP 362 (425) T 2jjq_A 326 EMARRNVEINNVDAEFE-------VASDR----EVSVKGFDTVIVDPP 362 (425) T ss_dssp HHHHHHHHHHTCCEEEE-------ECCTT----TCCCTTCSEEEECCC T ss_pred HHHHHHHHHCCCCEEEE-------EHHHH----HHHHCCCCEEEECCC T ss_conf 99999898779707986-------40113----443069999999998 No 131 >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A* Probab=96.01 E-value=0.016 Score=34.54 Aligned_cols=173 Identities=13% Similarity=0.158 Sum_probs=93.4 Q ss_pred CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH Q ss_conf 76657536-81799999999731784011013877640311766540468999999999853100533322550466667 Q gi|254780836|r 171 SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674) Q Consensus 171 ~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674) .+.-||+| +-..+++-+|+.+ ......+|.+--+|+|. ||.+ +.+ . . .-.++..|+++ T Consensus 6 kk~lGQnFL~d~~~~~~iv~~~----------~~~~~d~VlEIGpG~G~-LT~~---Ll~---~-~---~~~v~aiE~D~ 64 (249) T 3ftd_A 6 KKSFGQHLLVSEGVLKKIAEEL----------NIEEGNTVVEVGGGTGN-LTKV---LLQ---H-P---LKKLYVIELDR 64 (249) T ss_dssp --CCCSSCEECHHHHHHHHHHT----------TCCTTCEEEEEESCHHH-HHHH---HTT---S-C---CSEEEEECCCH T ss_pred CCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCH-HHHH---HHH---H-C---CCEEEEEEECC T ss_conf 7778845018989999999954----------89998949996998769-8999---997---0-4---57078999866 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 88999999989808875334566668234754579998664189998168567653100011123442266665357777 Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674) Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674) ..+.. ++... ...-+|..+|-|.-|.....+...|++|.||++.= T Consensus 65 ~l~~~------l~~~~-----~~~~~ii~~D~l~~~~~~~~~~~~vVgNLPY~Iss------------------------ 109 (249) T 3ftd_A 65 EMVEN------LKSIG-----DERLEVINEDASKFPFCSLGKELKVVGNLPYNVAS------------------------ 109 (249) T ss_dssp HHHHH------HTTSC-----CTTEEEECSCTTTCCGGGSCSSEEEEEECCTTTHH------------------------ T ss_pred CCHHH------HHHHC-----CCCEEEEECCHHHCCHHHCCCCCEEEECCCHHHHH------------------------ T ss_conf 20013------22220-----44328996340117864629762586144210417------------------------ Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCC--CCCCCCCCCHHHHHHHHHH-CCCEEEEEECCCCCCCC-CCCC Q ss_conf 4770659999999996146657880799973-8971--3477644326899999988-49468883176776557-8861 Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSP--LFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFR-TNIA 404 (674) Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~--LF~G~agsGEs~IRk~lie-~d~ieaII~LP~~lFyn-TgI~ 404 (674) -.|.+.+..... -+.++++ .--+ =+.|..+.|--.+ ++. -.-++-+...|.+.|+- -.+- T Consensus 110 -------~ii~~ll~~~~~-----~~~~vlmvQkEvA~Rl~~~~~y~~lSv---~~q~~~~~~~~~~V~~~~F~P~PkVd 174 (249) T 3ftd_A 110 -------LIIENTVYNKDC-----VPLAVFMVQKEVAEKLQGKKDTGWLSV---FVRTFYDVNYVMTVPPRFFVPPPKVQ 174 (249) T ss_dssp -------HHHHHHHHTGGG-----CSEEEEEEEHHHHHHHHTSSCCCHHHH---HHHHHEEEEEEEEECGGGEESCCSSC T ss_pred -------HHHHHHHHCCCC-----CCEEEEEEEHHHHHHHCCCCCCCHHHH---HHHHHHHEEECCCCCHHHCCCCCCCC T ss_conf -------999998731455-----300577675999987317889873469---99866431001456655468999623 Q ss_pred EEEEEEECCC Q ss_conf 6999994688 Q gi|254780836|r 405 TYLWILSNRK 414 (674) Q Consensus 405 t~Iwil~k~K 414 (674) .+|.-|..++ T Consensus 175 S~vv~l~~~~ 184 (249) T 3ftd_A 175 SAVIKLVKNE 184 (249) T ss_dssp EEEEEEEECC T ss_pred EEEEEEEECC T ss_conf 5889987579 No 132 >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Probab=95.97 E-value=0.049 Score=31.36 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=64.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) .|++-+...++-.|.+++ ...+..+|+|-.||||-+-....+.+ + ..+++.|++++... T Consensus 70 ~~~~is~P~~~A~ml~~L----------~l~~g~~VLeIGsGtGy~ta~la~l~-------g----~~V~~IE~~~~l~~ 128 (235) T 1jg1_A 70 AGQTVSAPHMVAIMLEIA----------NLKPGMNILEVGTGSGWNAALISEIV-------K----TDVYTIERIPELVE 128 (235) T ss_dssp TTCEECCHHHHHHHHHHH----------TCCTTCCEEEECCTTSHHHHHHHHHH-------C----SCEEEEESCHHHHH T ss_pred CCCEECHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHHC-------C----CEEEEEEECHHHHH T ss_conf 998976689999999970----------48999879994788767899999864-------9----73999962889999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 999998980887533456666823475457999866418999816856 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674) .|+.|+--.|... -.+..||-.. .......||.|+.+.-. T Consensus 129 ~a~~~l~~~g~~n-------v~~~~gd~~~-g~~~~~~fD~I~v~~a~ 168 (235) T 1jg1_A 129 FAKRNLERAGVKN-------VHVILGDGSK-GFPPKAPYDVIIVTAGA 168 (235) T ss_dssp HHHHHHHHTTCCS-------EEEEESCGGG-CCGGGCCEEEEEECSBB T ss_pred HHHHHHHHCCCCE-------EEEEECCCCC-CCCCCCCCCEEEEECCH T ss_conf 9999999809971-------6999887001-66655763436761465 No 133 >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Probab=95.94 E-value=0.028 Score=32.92 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=72.9 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCC Q ss_conf 3117665404689999999998531005333225504666678899999998980887533456666823475457-999 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDL 286 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~-~d~ 286 (674) .|.|-.||+|.+++..+. .++ ...+.|.|+.+...+.|.....-.|+..- .+..||... .+. T Consensus 44 ~iLEIGcG~G~~~~~lA~----~~P------~~~~igiD~~~~~v~~a~~~~~~~~l~Nv-------~~~~~da~~l~~~ 106 (214) T 1yzh_A 44 IHVEVGSGKGAFVSGMAK----QNP------DINYIGIDIQKSVLSYALDKVLEVGVPNI-------KLLWVDGSDLTDY 106 (214) T ss_dssp EEEEESCTTSHHHHHHHH----HCT------TSEEEEEESCHHHHHHHHHHHHHHCCSSE-------EEEECCSSCGGGT T ss_pred CEEEEEEECCHHHHHHHH----HCC------CCCEEEEECCHHHHHHHHHHHHHHCCCCE-------EEEECCHHHHHHH T ss_conf 189994108699999999----789------99779740778889999999998399864-------4552369887421 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973897134 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674) ++...+|.|..|.|- +|-+.+ .++ .|.- +-.||..+...|++ ||.+-+....-.+| T Consensus 107 ~~~~~~d~v~~~fPd--PwpK~r-----h~k----rRli---------~~~fl~~~~r~Lkp----gG~l~i~TD~~~y~ 162 (214) T 1yzh_A 107 FEDGEIDRLYLNFSD--PWPKKR-----HEK----RRLT---------YKTFLDTFKRILPE----NGEIHFKTDNRGLF 162 (214) T ss_dssp SCTTCCSEEEEESCC--CCCSGG-----GGG----GSTT---------SHHHHHHHHHHSCT----TCEEEEEESCHHHH T ss_pred CCCCEEEEEECCCCC--CCCHHH-----HHH----HHHC---------CHHHHHHHHHHCCC----CCEEEEEECCHHHH T ss_conf 257743111124678--662011-----131----5531---------07899999997488----98899996898999 No 134 >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Probab=95.93 E-value=0.00081 Score=42.97 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=50.2 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCC Q ss_conf 4031176654046899999999985310053332255046666788999999989808875334566668--23475457 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLS 283 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N--I~~GdTL~ 283 (674) ..+|+|.|||+|+.=..+.. . + ..+.|.|.+|-.|+|+.-.+-.-..+.... ....+ +..||++. T Consensus 84 ~~~VLD~taGlG~Da~~lA~----~----G----~~V~~vE~sp~~~~Ll~~~l~~a~~~~~~~-~~~~ri~~~~gDa~~ 150 (258) T 2r6z_A 84 HPTVWDATAGLGRDSFVLAS----L----G----LTVTAFEQHPAVACLLSDGIRRALLNPETQ-DTAARINLHFGNAAE 150 (258) T ss_dssp CCCEEETTCTTCHHHHHHHH----T----T----CCEEEEECCHHHHHHHHHHHHHHHHSHHHH-HHHTTEEEEESCHHH T ss_pred CCEEEEECCCCHHHHHHHHH----C----C----CEEEEEECCHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHCCHHH T ss_conf 98199907873599999997----6----9----989999688899999999999999696876-788755710075999 Q ss_pred C-C--CCCCCEEEEEEECCCCCC Q ss_conf 9-9--986641899981685676 Q gi|254780836|r 284 K-D--LFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 284 ~-d--~~~~~kFD~vlaNPPFg~ 303 (674) - . ...+.+||+|..+|||-. T Consensus 151 ~l~~l~~~~~~~DvIylDPMf~~ 173 (258) T 2r6z_A 151 QMPALVKTQGKPDIVYLDPMYPE 173 (258) T ss_dssp HHHHHHHHHCCCSEEEECCCC-- T ss_pred HHHHHHHCCCCCCEEEECCCCCC T ss_conf 99999963899888998899975 No 135 >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Probab=95.90 E-value=0.015 Score=34.76 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=97.7 Q ss_pred HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999862276657536-8179999999973178401101387764031176654046899999999985310053332 Q gi|254780836|r 161 HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 (674) Q Consensus 161 ~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~ 239 (674) .+++++.--..+.-|||| .-+.|++-+++.+-. .. .+|.+--+|+|.+ |.+ +.+.. T Consensus 12 ~~l~~~~~~~kK~lGQnFL~d~~i~~~iv~~~~~----------~~-~~VlEIGpG~G~L-T~~---L~~~~-------- 68 (271) T 3fut_A 12 ALLERHGLFADKRFGQNFLVSEAHLRRIVEAARP----------FT-GPVFEVGPGLGAL-TRA---LLEAG-------- 68 (271) T ss_dssp HHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCC----------CC-SCEEEECCTTSHH-HHH---HHHTT-------- T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----------CC-CCEEEECCCCCHH-HHH---HHHCC-------- T ss_conf 9999769998877784503898999999996589----------99-9889967977199-999---99608-------- Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCC Q ss_conf 25504666678899999998980887533456666823475457999866418999816856765310001112344226 Q gi|254780836|r 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 (674) Q Consensus 240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~ 319 (674) -.++..|+.+..+..-+... .+.. ..+..++-+..+.....+...|++|.||+++= T Consensus 69 ~~v~avE~D~~l~~~L~~~~--~~~~--------~~~i~~~~~~~~~~~~~~~~~vv~NLPY~Ist-------------- 124 (271) T 3fut_A 69 AEVTAIEKDLRLRPVLEETL--SGLP--------VRLVFQDALLYPWEEVPQGSLLVANLPYHIAT-------------- 124 (271) T ss_dssp CCEEEEESCGGGHHHHHHHT--TTSS--------EEEEESCGGGSCGGGSCTTEEEEEEECSSCCH-------------- T ss_pred CCEEEEEECHHHHHHHHHHH--HHCC--------HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH-------------- T ss_conf 96799983706788887543--3301--------03334655531033077642672365213267-------------- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCC--CCCCCCCCCH----HHHHHHHHHCCCEEEEEE Q ss_conf 66653577774770659999999996146657880799973-8971--3477644326----899999988494688831 Q gi|254780836|r 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSP--LFNGRAGSGE----SEIRRWLLENDLIEAIVA 392 (674) Q Consensus 320 ~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~--LF~G~agsGE----s~IRk~lie~d~ieaII~ 392 (674) -++.+.++.... .+ +|+| .--+ =+.+..|+.. |-+-++ -.-++-+.. T Consensus 125 -----------------~ii~~ll~~~~~-----~~-~vlm~QkEvA~Ri~a~~~~k~y~~lSv~~q~---~~~~~~~~~ 178 (271) T 3fut_A 125 -----------------PLVTRLLKTGRF-----AR-LVFLVQKEVAERMTARPKTPAYGVLTLRVAH---HAVAERLFD 178 (271) T ss_dssp -----------------HHHHHHHHHCCE-----EE-EEEEEEHHHHHHHTCCTTSTTCSHHHHHHHH---HEEEEEEEE T ss_pred -----------------HHHHHHCCCCCC-----CC-CEEEEHHHHHHHHHCCCCCCCCCCCHHHHHH---HHHCCCCCC T ss_conf -----------------999860345655-----44-1343108999998637997565824677666---340354654 Q ss_pred CCCCCCCC-CCCCEEEEEEECCCC Q ss_conf 76776557-886169999946887 Q gi|254780836|r 393 LPTDLFFR-TNIATYLWILSNRKT 415 (674) Q Consensus 393 LP~~lFyn-TgI~t~Iwil~k~K~ 415 (674) .|.+-||- -.+-..|+-+..+++ T Consensus 179 V~~~~F~P~PkVdS~vv~l~~k~~ 202 (271) T 3fut_A 179 LPPGAFFPPPKVWSSLVRLTPTGA 202 (271) T ss_dssp ECGGGEESCCSSCEEEEEEEECSC T ss_pred CCCCCCCCCCCEEEEEEEECCCCC T ss_conf 588789999953688885325665 No 136 >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* Probab=95.90 E-value=0.084 Score=29.82 Aligned_cols=174 Identities=16% Similarity=0.029 Sum_probs=80.5 Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC----------C Q ss_conf 877640311766540468999999999853100533322550466667889999999898088753345----------6 Q gi|254780836|r 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR----------D 271 (674) Q Consensus 202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~----------~ 271 (674) .+-++.+|.|-.||||.+...+ ... ....++|.++++.....|+.+.--.+...+... . T Consensus 53 ~~~~g~~vLDlGCG~G~~~~~l-------~~~----~~~~V~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265) T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLS-------ACE----SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 121 (265) T ss_dssp SSCCEEEEEEESCTTCCGGGTT-------GGG----TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTT T ss_pred CCCCCCEEEEECCCCCHHHHHH-------HHH----CCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 8888988999678776769999-------972----19989995699999999999987547762213257788752144 Q ss_pred C-------------CCCCCCCCCCCC---CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH Q ss_conf 6-------------668234754579---998664189998168567653100011123442266665357777477065 Q gi|254780836|r 272 L-------------SKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 (674) Q Consensus 272 ~-------------~~NI~~GdTL~~---d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~ 335 (674) . .......+.+.. ......+||.|+++=-. .|-. +...+ - T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~fD~i~~~~~l--~~~~---------------------~~~~~-~ 177 (265) T 2i62_A 122 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCL--DAAC---------------------PDLPA-Y 177 (265) T ss_dssp CSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH--HHHC---------------------SSHHH-H T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCE--EECC---------------------CCHHH-H T ss_conf 0156777777777764320210004443455567864799853722--3057---------------------65888-9 Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCCCC-----CCHHHHHHHHHHCCCE-EE--EEECCCCCCCCCCCCE Q ss_conf 999999999614665788079997--389713477644-----3268999999884946-88--8317677655788616 Q gi|254780836|r 336 MLFLMHLANKLELPPNGGGRAAIV--LSSSPLFNGRAG-----SGESEIRRWLLENDLI-EA--IVALPTDLFFRTNIAT 405 (674) Q Consensus 336 ~lFlqh~i~klk~~~~~ggr~aIV--~ngs~LF~G~ag-----sGEs~IRk~lie~d~i-ea--II~LP~~lFynTgI~t 405 (674) ..++.++...||| ||+.... .+.+-...|+.- =.+..||..|-+.++. +. ++..+......-. + T Consensus 178 ~~~~~~~~~~Lkp----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~aGf~v~~~~~~~~~~~~~~~~~--~ 251 (265) T 2i62_A 178 RTALRNLGSLLKP----GGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNN--E 251 (265) T ss_dssp HHHHHHHHTTEEE----EEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCC--C T ss_pred HHHHHHHHHHCCC----CEEEEEEEECCCCCCEECCEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--C T ss_conf 9999999985488----809999998578854346555267387999999999987998999998347720222688--6 Q ss_pred EEEEEECCCCC Q ss_conf 99999468874 Q gi|254780836|r 406 YLWILSNRKTE 416 (674) Q Consensus 406 ~Iwil~k~K~~ 416 (674) .+.++.-+||. T Consensus 252 ~~~~lvArKp~ 262 (265) T 2i62_A 252 GLFSLVGRKPG 262 (265) T ss_dssp CEEEEEEECCC T ss_pred EEEEEEEECCC T ss_conf 28999997878 No 137 >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} Probab=95.84 E-value=0.0091 Score=36.12 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=61.5 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682--3475457 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLS 283 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~ 283 (674) +.+|+|-.||||.+.... .... ...++|.|+++...+.|+.+.- . .+| ..+|... T Consensus 44 g~rVLDiGCG~G~~~~~l----~~~~-------~~~V~gvD~S~~~l~~a~~~~~----~--------~~v~~~~~d~~~ 100 (243) T 3bkw_A 44 GLRIVDLGCGFGWFCRWA----HEHG-------ASYVLGLDLSEKMLARARAAGP----D--------TGITYERADLDK 100 (243) T ss_dssp TCEEEEETCTTCHHHHHH----HHTT-------CSEEEEEESCHHHHHHHHHTSC----S--------SSEEEEECCGGG T ss_pred CCEEEEECCCCCHHHHHH----HHCC-------CCEEEEECCHHHHHHHHHHHCC----C--------CCCCCCCCCCCC T ss_conf 899999788898999999----9759-------8789998757989999986134----4--------433310023344 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC Q ss_conf 99986641899981685676531000111234422666653577774770659999999996146657880799973897 Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 (674) Q Consensus 284 ~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs 363 (674) - .+++..||+|+++=-+ .|-.+ . -.+|..+-..|++ ||.+.+...+ T Consensus 101 ~-~~~~~~fD~V~~~~~l--~~~~d----------------------~----~~~l~ei~r~Lkp----gG~li~~~~~- 146 (243) T 3bkw_A 101 L-HLPQDSFDLAYSSLAL--HYVED----------------------V----ARLFRTVHQALSP----GGHFVFSTEH- 146 (243) T ss_dssp C-CCCTTCEEEEEEESCG--GGCSC----------------------H----HHHHHHHHHHEEE----EEEEEEEEEC- T ss_pred C-CCCCCCCCCCCCEEEE--EECCC----------------------H----HHHHHHHHHHCCC----CCEEEEEECC- T ss_conf 6-6554345456551367--61689----------------------9----9999999998385----8489999747- Q ss_pred CCC Q ss_conf 134 Q gi|254780836|r 364 PLF 366 (674) Q Consensus 364 ~LF 366 (674) |+| T Consensus 147 ~~~ 149 (243) T 3bkw_A 147 PIY 149 (243) T ss_dssp HHH T ss_pred CCC T ss_conf 874 No 138 >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Probab=95.82 E-value=0.011 Score=35.58 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=66.0 Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 276657536-8179999999973178401101387764031176654046899999999985310053332255046666 Q gi|254780836|r 170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674) Q Consensus 170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674) .+++-||+| +-..|++-+++.+ ......+|.+--||+|.+ |.. +.+.+ ..+++.|++ T Consensus 3 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~L-T~~---L~~~~--------~~v~aiE~D 60 (245) T 1yub_A 3 KNIKYSQNFLTSEKVLNQIIKQL----------NLKETDTVYEIGTGKGHL-TTK---LAKIS--------KQVTSIELD 60 (245) T ss_dssp CCCCSCCCBCCCTTTHHHHHHHC----------CCCSSEEEEECSCCCSSC-SHH---HHHHS--------SEEEESSSS T ss_pred CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHHCC--------CCCEEECCC T ss_conf 99887871478989999999945----------899999689979973599-999---99616--------500403404 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 78899999998980887533456666823475457999866418999816856765 Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674) Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674) +..+..++.. ......-.|..||-|.-|. +......|++|-||+.+ T Consensus 61 ~~l~~~l~~~---------~~~~~n~~ii~~D~l~~~~-~~~~~~~vv~NLPY~Is 106 (245) T 1yub_A 61 SHLFNLSSEK---------LKLNTRVTLIHQDILQFQF-PNKQRYKIVGNIPYHLS 106 (245) T ss_dssp CSSSSSSSCT---------TTTCSEEEECCSCCTTTTC-CCSSEEEEEEECCSSSC T ss_pred HHHHHHHHHH---------HHCCCCCHHHHCCHHCCCC-CCCCCEEEEECCCHHHH T ss_conf 4668988755---------4113400022011000144-45786568716757876 No 139 >3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* Probab=95.81 E-value=0.097 Score=29.41 Aligned_cols=162 Identities=10% Similarity=-0.044 Sum_probs=86.5 Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999 Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674) Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674) +-|+ -++|-+.|+- +.+. + ...++.+|+|=.||||.+.+...+++. ....+||.|+++...+.++. T Consensus 54 w~p~-rSklaaai~~-gl~~-~--~lkpG~~VLdLG~G~G~~~~~la~~Vg---------~~G~V~aVD~s~~~l~~a~~ 119 (232) T 3id6_C 54 WNAF-RSKLAGAILK-GLKT-N--PIRKGTKVLYLGAASGTTISHVSDIIE---------LNGKAYGVEFSPRVVRELLL 119 (232) T ss_dssp CCTT-TCHHHHHHHT-TCSC-C--SCCTTCEEEEETCTTSHHHHHHHHHHT---------TTSEEEEEECCHHHHHHHHH T ss_pred ECCC-CCHHHHHHHH-HHHH-C--CCCCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHH T ss_conf 7875-0289999984-3330-5--889999999967718899999999715---------68769999799999999997 Q ss_pred HHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH Q ss_conf 98980887533456666823-47545799986641899981685676531000111234422666653577774770659 Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 (674) Q Consensus 258 nMli~g~~~d~~~~~~~NI~-~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~ 336 (674) ..--++... ++. .........+....||+|...-.+-- + .- T Consensus 120 ~a~~~~n~~--------~v~~d~~~~~~~~~~~~~vd~i~~~~~~~~-----------------------------~-~~ 161 (232) T 3id6_C 120 VAQRRPNIF--------PLLADARFPQSYKSVVENVDVLYVDIAQPD-----------------------------Q-TD 161 (232) T ss_dssp HHHHCTTEE--------EEECCTTCGGGTTTTCCCEEEEEECCCCTT-----------------------------H-HH T ss_pred HHHHCCCCC--------CEEECCCCHHHCCCCCCEEEEEEEECCCCC-----------------------------H-HH T ss_conf 656546776--------301014675453777736999998525732-----------------------------1-99 Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCC-CCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCC Q ss_conf 99999999614665788079997389-713477644326899999988494-688831767 Q gi|254780836|r 337 LFLMHLANKLELPPNGGGRAAIVLSS-SPLFNGRAGSGESEIRRWLLENDL-IEAIVALPT 395 (674) Q Consensus 337 lFlqh~i~klk~~~~~ggr~aIV~ng-s~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~ 395 (674) .|+.++...||| ||+..|+... |.--+++...--....+.|-+.++ +.-+|.|.+ T Consensus 162 ~~l~~~~~~LKp----gG~lvi~~k~~~~d~~~~~~~~~~~~i~~L~~~GF~~~E~i~L~p 218 (232) T 3id6_C 162 IAIYNAKFFLKV----NGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP 218 (232) T ss_dssp HHHHHHHHHEEE----EEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT T ss_pred HHHHHHHHHCCC----CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 999999851589----978999997454668787668999999999985997999964788 No 140 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Probab=95.74 E-value=0.032 Score=32.58 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=35.0 Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 204 ~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) ++..+++|--||+|+++..+.... + ....+|.|+.+...++|+...- T Consensus 241 kpgd~fLDLGCG~G~vvl~aA~~~-------g---~~~viGIDis~~~l~~A~~~~~ 287 (433) T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALEC-------G---CALSFGCEIMDDASDLTILQYE 287 (433) T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-------C---CSEEEEEECCHHHHHHHHHHHH T ss_pred CCCCEEEECCCCCCHHHHHHHHHC-------C---CCEEEEEECCHHHHHHHHHHHH T ss_conf 999989974899989999999975-------9---9879999799999999999999 No 141 >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Probab=95.72 E-value=0.081 Score=29.93 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=84.5 Q ss_pred CCCCCCHHHHHH-HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 575368179999-9999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 174 AEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 174 aGeffTPR~Vi~-Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) +|-|| .++.+. +.+.++ .|.++..|.|-|||-||=-+.....+. . ...++..|+++.-. T Consensus 84 ~G~~~-iQd~sS~l~~~~L----------~~~pg~~VLDlCAAPGgKt~~la~~l~----~-----~g~l~a~d~~~~R~ 143 (456) T 3m4x_A 84 AGYEY-SQEPSAMIVGTAA----------AAKPGEKVLDLCAAPGGKSTQLAAQMK----G-----KGLLVTNEIFPKRA 143 (456) T ss_dssp TTSCE-ECCTTTHHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHHT----T-----CSEEEEECSSHHHH T ss_pred CCCEE-EECHHHHHHHHHH----------CCCCCCEEEEECCCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHH T ss_conf 98199-9788999999970----------999999898816786479999999700----8-----97588630646777 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC-C Q ss_conf 9999998980887533456666823--475457999866418999816856765--3100011123442266665357-7 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQ--QGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP-G 327 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~--~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~-g 327 (674) .+.+.|+--.|.. |+. ..|...-.......||.||..+|=+-. |.++.+... ++.. . T Consensus 144 ~~l~~nl~r~g~~---------n~~v~~~d~~~~~~~~~~~fD~VLvDaPCSG~G~~rk~p~~~~---------~~~~~~ 205 (456) T 3m4x_A 144 KILSENIERWGVS---------NAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIK---------EWTEES 205 (456) T ss_dssp HHHHHHHHHHTCS---------SEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHH---------HCCTTH T ss_pred HHHHHHHHHCCCC---------CEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHH---------HCCHHH T ss_conf 8998768752787---------4899932544355212465557997487677873066806655---------424446 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 7747706599999999961466578807999738971347764432689999998849 Q gi|254780836|r 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 (674) Q Consensus 328 lP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d 385 (674) +-.-+.-|.--|.+.+..|++ ||++.-.. -+++.- -.|..|+ +++++. T Consensus 206 ~~~~~~~Q~~iL~~a~~~lkp----GG~lvYST--CS~~~e---ENE~vV~-~~L~~~ 253 (456) T 3m4x_A 206 PLYCQKRQQEILSSAIKMLKN----KGQLIYST--CTFAPE---ENEEIIS-WLVENY 253 (456) T ss_dssp HHHHHHHHHHHHHHHHHTEEE----EEEEEEEE--SCCCGG---GTHHHHH-HHHHHS T ss_pred HHHHHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCHH---HCHHHHH-HHHHHC T ss_conf 778999999999999975889----98899991--899745---2999999-999869 No 142 >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Probab=95.65 E-value=0.11 Score=29.01 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=86.5 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) ...+|.|-.||+|.+.... . ... ...++|.|+++...+.|+..+--.+... -++..+|-. + T Consensus 79 ~~~~vLDiGcG~G~~~~~l----l---~~~----~~~v~~vD~s~~~l~~ar~~~~~~~~~~-------v~~~~~d~~-~ 139 (241) T 2ex4_A 79 GTSCALDCGAGIGRITKRL----L---LPL----FREVDMVDITEDFLVQAKTYLGEEGKRV-------RNYFCCGLQ-D 139 (241) T ss_dssp CCSEEEEETCTTTHHHHHT----T---TTT----CSEEEEEESCHHHHHHHHHHTGGGGGGE-------EEEEECCGG-G T ss_pred CCCEEEEECCCCCHHHHHH----H---HCC----CCEEEEEECCHHHHHHHHHHHHHCCCCC-------EEEEECCHH-H T ss_conf 8876999015707869999----9---705----9989999999999999998776504663-------489957888-7 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEECC-- Q ss_conf 998664189998168567653100011123442266665357777477065-99999999961466578807999738-- Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLS-- 361 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~-~lFlqh~i~klk~~~~~ggr~aIV~n-- 361 (674) -.+++.+||+|+++--+.- + +|.+ ..|+..+...|+| ||++.|.-+ T Consensus 140 l~~~~~~fD~I~~~~vl~h------------------------l---~d~~~~~~l~~~~~~Lkp----gG~lii~d~~~ 188 (241) T 2ex4_A 140 FTPEPDSYDVIWIQWVIGH------------------------L---TDQHLAEFLRRCKGSLRP----NGIIVIKDNMA 188 (241) T ss_dssp CCCCSSCEEEEEEESCGGG------------------------S---CHHHHHHHHHHHHHHEEE----EEEEEEEEEEB T ss_pred CCCCCCCCCEEEECCCHHC------------------------C---CCHHHHHHHHHHHHHCCC----CEEEEEEEECC T ss_conf 1577578318996465104------------------------7---567889999999983199----86999998248 Q ss_pred -CCCCCCCCCC---CCHHHHHHHHHHCCC--EEEE--EECCCCCCCCCCCCEEEEEE Q ss_conf -9713477644---326899999988494--6888--31767765578861699999 Q gi|254780836|r 362 -SSPLFNGRAG---SGESEIRRWLLENDL--IEAI--VALPTDLFFRTNIATYLWIL 410 (674) Q Consensus 362 -gs~LF~G~ag---sGEs~IRk~lie~d~--ieaI--I~LP~~lFynTgI~t~Iwil 410 (674) .+..+..... ....++|+-+-+.++ ++.- -.+|.++| +++.++| T Consensus 189 ~~~~~~d~~~~~~~rs~~~~~~l~~~aGf~iv~~~~q~~~P~~l~-----~V~~~~l 240 (241) T 2ex4_A 189 QEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIY-----HVYSFAL 240 (241) T ss_dssp SSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSC-----EEEEEEE T ss_pred CCCCCCCCCCCEEECCHHHHHHHHHHCCCEEEEEEEECCCCCCEE-----EEEEEEE T ss_conf 898611377852889999999999987998999998579998647-----9999997 No 143 >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative, SAM-dependent methyltransferase; HET: SAI; 1.94A {Leishmania major strain friedlin} SCOP: c.66.1.42 Probab=95.54 E-value=0.12 Score=28.77 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=79.7 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|+|-.||+|.+..... ... ...+.|.|+++...+.|+.++- +... .+...+| +.+- T Consensus 94 ~~~vLDiGcG~G~~t~~ll----~~~-------~~~V~~vD~s~~~l~~a~~~~~--~~~~-------~~~~~~d-~~~~ 152 (254) T 1xtp_A 94 TSRALDCGAGIGRITKNLL----TKL-------YATTDLLEPVKHMLEEAKRELA--GMPV-------GKFILAS-META 152 (254) T ss_dssp CSEEEEETCTTTHHHHHTH----HHH-------CSEEEEEESCHHHHHHHHHHTT--TSSE-------EEEEESC-GGGC T ss_pred CCEEEEECCCCCHHHHHHH----HHC-------CCEEEEEECCHHHHHHHHHCCC--CCCE-------EEEEECC-HHHC T ss_conf 9738996678859999999----863-------9858999198899999864015--7742-------7999778-7568 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEECCCC- Q ss_conf 98664189998168567653100011123442266665357777477065-9999999996146657880799973897- Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSS- 363 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~-~lFlqh~i~klk~~~~~ggr~aIV~ngs- 363 (674) .+++.+||+|+++-.+.- + .+-+ ..|+..+...|++ ||++.|.-+.+ T Consensus 153 ~~~~~~fD~I~~~~~l~h--------l-------------------~d~~~~~~l~~~~~~Lkp----gG~ivi~e~~~~ 201 (254) T 1xtp_A 153 TLPPNTYDLIVIQWTAIY--------L-------------------TDADFVKFFKHCQQALTP----NGYIFFKENCST 201 (254) T ss_dssp CCCSSCEEEEEEESCGGG--------S-------------------CHHHHHHHHHHHHHHEEE----EEEEEEEEEBC- T ss_pred CCCCCCCCEEEEEEEHHC--------C-------------------CHHHHHHHHHHHHHHCCC----CCEEEEEECCCC T ss_conf 887776346764211004--------7-------------------614578999999998189----968999964777 Q ss_pred ---CCCCCCC---CCCHHHHHHHHHHCCC--EEEEE--ECCCCCCC Q ss_conf ---1347764---4326899999988494--68883--17677655 Q gi|254780836|r 364 ---PLFNGRA---GSGESEIRRWLLENDL--IEAIV--ALPTDLFF 399 (674) Q Consensus 364 ---~LF~G~a---gsGEs~IRk~lie~d~--ieaII--~LP~~lFy 399 (674) ..+.-.- ...+.++++.+-+.++ ++..+ .+|.++|- T Consensus 202 ~~~~~~d~~~~s~~rs~~~~~~l~~~aGf~vi~~~~q~~fP~~l~~ 247 (254) T 1xtp_A 202 GDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFP 247 (254) T ss_dssp -CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTTSCC T ss_pred CCCCEECCCCCCEECCHHHHHHHHHHCCCEEEEEEEECCCCCCEEE T ss_conf 8763111567743489999999999879989999973699875068 No 144 >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Probab=95.42 E-value=0.044 Score=31.68 Aligned_cols=93 Identities=8% Similarity=-0.068 Sum_probs=54.5 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) |++-+..+++-.|.+.| ...+..+|.|-.||||-+-.... .+ . .+++|.|++++.... T Consensus 50 g~~~s~p~~~a~~l~~L----------~l~~g~~VLeIG~GsGy~ta~La-~l---~--------~~V~~vE~~~~~~~~ 107 (231) T 1vbf_A 50 GINTTALNLGIFMLDEL----------DLHKGQKVLEIGTGIGYYTALIA-EI---V--------DKVVSVEINEKMYNY 107 (231) T ss_dssp TEEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSHHHHHHH-HH---S--------SEEEEEESCHHHHHH T ss_pred CCEECCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHH-HH---C--------CEEEEECCCHHHHHH T ss_conf 96101489999999971----------89997989997798778899999-85---6--------787676289999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC Q ss_conf 999989808875334566668234754579998664189998168 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP 299 (674) |+.++- ... .-++..||-.. .......||.|+.+- T Consensus 108 A~~~~~--~~~-------nv~~~~gDg~~-g~~~~~pfD~Iiv~~ 142 (231) T 1vbf_A 108 ASKLLS--YYN-------NIKLILGDGTL-GYEEEKPYDRVVVWA 142 (231) T ss_dssp HHHHHT--TCS-------SEEEEESCGGG-CCGGGCCEEEEEESS T ss_pred HHHHHC--CCC-------EEEEEECCHHC-CCCCCCCEEEEEECC T ss_conf 998740--686-------26898663202-873469857999857 No 145 >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Probab=95.36 E-value=0.092 Score=29.54 Aligned_cols=137 Identities=10% Similarity=0.045 Sum_probs=69.7 Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCC Q ss_conf 7640311766540468999999999853100533322550466667889999999898088753345666682--34754 Q gi|254780836|r 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGST 281 (674) Q Consensus 204 ~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdT 281 (674) .++.+|+|-.||||.+.+...+.+ + ...+||.|++|+..+.++...- .. .|+ ..+|. T Consensus 73 kpg~~VLDlGcGtG~~~~~la~~~----~------~G~V~aVDiSp~mi~~a~~~a~--~~---------~ni~~i~~d~ 131 (230) T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIA----D------KGIVYAIEYAPRIMRELLDACA--ER---------ENIIPILGDA 131 (230) T ss_dssp CTTCEEEEESCCSSHHHHHHHHHT----T------TSEEEEEESCHHHHHHHHHHTT--TC---------TTEEEEECCT T ss_pred CCCCEEEEECCCCCHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHH--HC---------CCCEEEEEEC T ss_conf 999999996797798999999758----9------9659999799899999998776--44---------8731798413 Q ss_pred CCCC--CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 5799--98664189998168567653100011123442266665357777477065999999999614665788079997 Q gi|254780836|r 282 LSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674) Q Consensus 282 L~~d--~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674) ...+ ......+|++..+-.+- .+ --.++.++-.-||+ ||+..++ T Consensus 132 ~~~~~~~~~~~~vd~i~~~~~~~-----------------------------~~-~~~~l~~~~~~LKp----gG~l~i~ 177 (230) T 1fbn_A 132 NKPQEYANIVEKVDVIYEDVAQP-----------------------------NQ-AEILIKNAKWFLKK----GGYGMIA 177 (230) T ss_dssp TCGGGGTTTSCCEEEEEECCCST-----------------------------TH-HHHHHHHHHHHEEE----EEEEEEE T ss_pred CCCCCCCCCCCEEEEEEEECCCH-----------------------------HH-HHHHHHHHHHHCCC----CCEEEEE T ss_conf 58642356663599997101242-----------------------------78-99999998864589----9689999 Q ss_pred CCCCCC-CCCCCCCCHHHHHHHHHHCCC-EEEEEECCC Q ss_conf 389713-477644326899999988494-688831767 Q gi|254780836|r 360 LSSSPL-FNGRAGSGESEIRRWLLENDL-IEAIVALPT 395 (674) Q Consensus 360 ~ngs~L-F~G~agsGEs~IRk~lie~d~-ieaII~LP~ 395 (674) ....+. -++....--.+.++.|-+.++ +.-++.|.+ T Consensus 178 ~k~~s~d~~~~~~~~~~~~~~~L~~aGF~ive~i~L~p 215 (230) T 1fbn_A 178 IKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP 215 (230) T ss_dssp EEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTT T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 97145578778789999999999987994899975798 No 146 >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Probab=95.23 E-value=0.026 Score=33.13 Aligned_cols=121 Identities=12% Similarity=-0.061 Sum_probs=67.7 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) +++.+.+++++. ..+..|+|-.||||.+... +.+.. ...+.|.|+++....+|+-+.- T Consensus 47 ~~~~~~l~~~~~-----------~~g~rVLeiG~G~G~~a~~----la~~~-------~~~vt~id~s~~~l~~a~~~~~ 104 (236) T 1zx0_A 47 TPYMHALAAAAS-----------SKGGRVLEVGFGMAIAASK----VQEAP-------IDEHWIIECNDGVFQRLRDWAP 104 (236) T ss_dssp HHHHHHHHHHHT-----------TTCEEEEEECCTTSHHHHH----HHTSC-------EEEEEEEECCHHHHHHHHHHGG T ss_pred HHHHHHHHHHHC-----------CCCCEEEEECCCCCHHHHH----HHHCC-------CCEEEEEECCHHHHHHHHHHHH T ss_conf 999999997534-----------4898499988885099999----99729-------9779998089899999999887 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 80887533456666823475457-99986641899981685676531000111234422666653577774770659999 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~-~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl 339 (674) -.+... .+..++... ...++...||.|+.++..... . ..+. .+ .-.|+ T Consensus 105 ~~~~~~--------~~~~~~~~~~~~~~~~~~fD~i~~D~~~~~~--~------~~~~--------------~~-~~~~~ 153 (236) T 1zx0_A 105 RQTHKV--------IPLKGLWEDVAPTLPDGHFDGILYDTYPLSE--E------TWHT--------------HQ-FNFIK 153 (236) T ss_dssp GCSSEE--------EEEESCHHHHGGGSCTTCEEEEEECCCCCBG--G------GTTT--------------HH-HHHHH T ss_pred HCCCCC--------CEEECHHHHHHCCCCCCCCCCEEECCEEECC--C------EECC--------------CC-HHHHH T ss_conf 558862--------0232008876201223566744521162012--2------0102--------------34-68888 Q ss_pred HHHHHHHCCCCCCCCEEEE Q ss_conf 9999961466578807999 Q gi|254780836|r 340 MHLANKLELPPNGGGRAAI 358 (674) Q Consensus 340 qh~i~klk~~~~~ggr~aI 358 (674) .++...||| ||+..+ T Consensus 154 ~~~~RvLkP----GG~l~~ 168 (236) T 1zx0_A 154 NHAFRLLKP----GGVLTY 168 (236) T ss_dssp HTHHHHEEE----EEEEEE T ss_pred HHHHHEECC----CCEEEE T ss_conf 998620678----827999 No 147 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=95.22 E-value=0.041 Score=31.87 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=52.2 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) +.+.+.++++|.. . .+....+|.|-.||||.++.... +..+ ...++|.|+++...+.|+.. T Consensus 68 ~~~~~~~~~~l~~----~---~~~~~~~vLDiGcG~G~~~~~l~----~~~~------~~~~~gvD~s~~~l~~a~~~-- 128 (269) T 1p91_A 68 QPLRDAIVAQLRE----R---LDDKATAVLDIGCGEGYYTHAFA----DALP------EITTFGLDVSKVAIKAAAKR-- 128 (269) T ss_dssp HHHHHHHHHHHHH----H---SCTTCCEEEEETCTTSTTHHHHH----HTCT------TSEEEEEESCHHHHHHHHHH-- T ss_pred HHHHHHHHHHHHH----H---CCCCCCEEEEECCCCCHHHHHHH----HHCC------CCEEEEEECCHHHHHHHHHC-- T ss_conf 8999999999985----4---78889969996898969999999----8689------96899997958899999851-- Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC Q ss_conf 80887533456666823475457999866418999816 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN 298 (674) ..+ -....||.. +-.+++..||+|++. T Consensus 129 ~~~----------~~~~~~d~~-~lp~~d~sfD~v~~~ 155 (269) T 1p91_A 129 YPQ----------VTFCVASSH-RLPFSDTSMDAIIRI 155 (269) T ss_dssp CTT----------SEEEECCTT-SCSBCTTCEEEEEEE T ss_pred CCC----------CCCEECCHH-HCCCCCCCEEEEECC T ss_conf 775----------430002342-167899857787420 No 148 >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Probab=95.07 E-value=0.023 Score=33.54 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=49.2 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) .++|+|-.||+|.++... .+.. ....+.|.|+++.....|+-++-..+....... ..+...++ +.+. T Consensus 30 ~~rVLDvGCG~G~~~~~L----a~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 96 (219) T 3jwg_A 30 AKKVIDLGCGEGNLLSLL----LKDK------SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRK--RISLFQSS-LVYR 96 (219) T ss_dssp CCEEEEETCTTCHHHHHH----HTST------TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHT--TEEEEECC-SSSC T ss_pred CCEEEEEECCCCHHHHHH----HHHC------CCCEEEECCCCHHHHHHHHHHHHHCCCCHHHCC--CCCCCCCC-HHHC T ss_conf 498999818789999999----9838------974563225999999999998655044123200--10001145-3325 Q ss_pred CCCCCEEEEEEECCCC Q ss_conf 9866418999816856 Q gi|254780836|r 286 LFTGKRFHYCLSNPPF 301 (674) Q Consensus 286 ~~~~~kFD~vlaNPPF 301 (674) .+...+||+|++.=-+ T Consensus 97 ~~~~~~fD~i~~~~vl 112 (219) T 3jwg_A 97 DKRFSGYDAATVIEVI 112 (219) T ss_dssp CGGGTTCSEEEEESCG T ss_pred CHHCCCCCEEHHHHHH T ss_conf 0003655456275569 No 149 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Probab=95.02 E-value=0.046 Score=31.54 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=59.1 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682--3475457 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLS 283 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~ 283 (674) ..+|.|-.||||.++.. +. +. ...+.|.|+++...+.|+... .+. .+| ..+|-+. T Consensus 52 ~~~vLDvGcG~G~~~~~----la---~~-----~~~v~gvD~s~~~l~~a~~~~--~~~---------~~i~~~~~d~~~ 108 (216) T 3ofk_A 52 VSNGLEIGCAAGAFTEK----LA---PH-----CKRLTVIDVMPRAIGRACQRT--KRW---------SHISWAATDILQ 108 (216) T ss_dssp EEEEEEECCTTSHHHHH----HG---GG-----EEEEEEEESCHHHHHHHHHHT--TTC---------SSEEEEECCTTT T ss_pred CCEEEEEECCCCHHHHH----HH---HH-----CCEEEEEECCHHHHHHHHHHH--CCC---------CEEECCCCCHHH T ss_conf 99099963889899999----99---70-----998999969989999999861--546---------223101020223 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 99986641899981685676531000111234422666653577774770659-999999996146657880799973 Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 284 ~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) . .+..+||+|+++--+- | +|.. .++ .++..+...|+| ||++.|.. T Consensus 109 ~--~~~~~fD~V~~~~vl~--~----------------------~~~~--~~~~~~l~~~~~~L~p----gG~l~i~~ 154 (216) T 3ofk_A 109 F--STAELFDLIVVAEVLY--Y----------------------LEDM--TQMRTAIDNMVKMLAP----GGHLVFGS 154 (216) T ss_dssp C--CCSCCEEEEEEESCGG--G----------------------SSSH--HHHHHHHHHHHHTEEE----EEEEEEEE T ss_pred H--CCCCCCCEEEECCCHH--H----------------------CCCH--HHHHHHHHHHHHHCCC----CCEEEEEE T ss_conf 2--3578714899845577--5----------------------8998--9999999999987798----83899996 No 150 >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Probab=94.78 E-value=0.2 Score=27.30 Aligned_cols=155 Identities=11% Similarity=-0.003 Sum_probs=81.5 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) +|.|..||||..... +.+. ...++|.|+++...+.|+.+.--.|.+.. +..+|-. +-.+ T Consensus 32 ~vLDlGcG~G~~~~~----la~~--------G~~V~~vD~s~~~l~~a~~~~~~~~~~~~--------~~~~d~~-~~~~ 90 (202) T 2kw5_A 32 KILCLAEGEGRNACF----LASL--------GYEVTAVDQSSVGLAKAKQLAQEKGVKIT--------TVQSNLA-DFDI 90 (202) T ss_dssp EEEECCCSCTHHHHH----HHTT--------TCEEEEECSSHHHHHHHHHHHHHHTCCEE--------EECCBTT-TBSC T ss_pred CEEEECCCCCHHHHH----HHHC--------CCCEEEEECCHHHHHHHHHHHHHHCCCEE--------EEECCHH-HCCC T ss_conf 399983778999999----9986--------99146777789999999998887199558--------9982263-3899 Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC--CCCC Q ss_conf 66418999816856765310001112344226666535777747706599999999961466578807999738--9713 Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS--SSPL 365 (674) Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n--gs~L 365 (674) +...||.+++.-.+- |+. + .-.++..+...|+| ||.+.+... ...- T Consensus 91 ~~~~~d~~~~~~~~~--------------------------~~~-~-~~~~l~~~~~~Lkp----gG~~~~~~~~~~~~~ 138 (202) T 2kw5_A 91 VADAWEGIVSIFCHL--------------------------PSS-L-RQQLYPKVYQGLKP----GGVFILEGFAPEQLQ 138 (202) T ss_dssp CTTTCSEEEEECCCC--------------------------CHH-H-HHHHHHHHHTTCCS----SEEEEEEEECTTTGG T ss_pred CCCCEEEEEEEEEEC--------------------------CHH-H-HHHHHHHHHHHCCC----CCEEEEEECCCCCCC T ss_conf 889599985157853--------------------------788-9-99999999998197----949999981677644 Q ss_pred C-CCCCC-----CCHHHHHHHHHHCCCE--EEE-EECCCCCCCCCCCCEEEEEEECCCCCC Q ss_conf 4-77644-----3268999999884946--888-317677655788616999994688743 Q gi|254780836|r 366 F-NGRAG-----SGESEIRRWLLENDLI--EAI-VALPTDLFFRTNIATYLWILSNRKTEE 417 (674) Q Consensus 366 F-~G~ag-----sGEs~IRk~lie~d~i--eaI-I~LP~~lFynTgI~t~Iwil~k~K~~~ 417 (674) + .|+.. -.+.++|+.+-.-++. +.. ..+++.. +.+|.+..|.++- +|+++ T Consensus 139 ~~~g~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~eg~-~h~g~a~vi~lva-rK~e~ 197 (202) T 2kw5_A 139 YNTGGPKDLDLLPKLETLQSELPSLNWLIANNLERNLDEGA-YHQGKAALIQLLG-QKLEH 197 (202) T ss_dssp GTSCCSSSGGGCCCHHHHHHHCSSSCEEEEEEEEEECSCSS-SSCCEEEEEEEEE-CCCSS T ss_pred CCCCCCCCHHHCCCHHHHHHHCCCCCEEEEEEEEEEECCCC-CCCCCHHHEEEEE-EEECC T ss_conf 56799999477899899998656682699999999704688-7777565289999-92555 No 151 >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Probab=94.76 E-value=0.044 Score=31.66 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=57.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|-+||||.+... + .+. ..+.|.|+++...+.|+...--.+.+. +...||-..-+ T Consensus 35 ~~VLD~GCG~G~~~~~----l---a~~------~~v~giD~s~~~l~~a~~~~~~~~~~i--------~~~~~d~~~~~- 92 (243) T 3d2l_A 35 KRIADIGCGTGTATLL----L---ADH------YEVTGVDLSEEMLEIAQEKAMETNRHV--------DFWVQDMRELE- 92 (243) T ss_dssp CEEEEESCTTCHHHHH----H---TTT------SEEEEEESCHHHHHHHHHHHHHTTCCC--------EEEECCGGGCC- T ss_pred CEEEEECCCCCHHHHH----H---HHC------CEEEEEECCHHHHHHHHHHHHHCCCEE--------EECCCCHHCCC- T ss_conf 9999968878799999----8---618------579999885188999887653012023--------31012000011- Q ss_pred CCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 866418999816-85676531000111234422666653577774770659999999996146657880799973 Q gi|254780836|r 287 FTGKRFHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 287 ~~~~kFD~vlaN-PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) ++ .+||.++.. =-|+ | +....+ .-.+++.+...||| ||+.++-. T Consensus 93 ~~-~~~d~v~~~~~s~~--~----------------------l~~~~~-~~~~l~~i~~~Lkp----gG~~v~~~ 137 (243) T 3d2l_A 93 LP-EPVDAITILCDSLN--Y----------------------LQTEAD-VKQTFDSAARLLTD----GGKLLFDV 137 (243) T ss_dssp CS-SCEEEEEECTTGGG--G----------------------CCSHHH-HHHHHHHHHHHEEE----EEEEEEEE T ss_pred CC-CCCCCHHHHHHHHH--C----------------------CCCHHH-HHHHHHHHHHHCCC----CCEEEEEE T ss_conf 24-34343134332211--1----------------------567157-78999999976488----81899995 No 152 >3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987} Probab=94.75 E-value=0.046 Score=31.51 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=58.2 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|+|-.||+|.++. ++.+. ...++|.|+++.....|+.+. .++..++.-..+ T Consensus 33 ~~~ILDIGcG~G~~~~----~l~~~--------~~~v~giD~s~~~i~~a~~~~--------------~~~~~~~~~~~~ 86 (230) T 3cc8_A 33 WKEVLDIGCSSGALGA----AIKEN--------GTRVSGIEAFPEAAEQAKEKL--------------DHVVLGDIETMD 86 (230) T ss_dssp CSEEEEETCTTSHHHH----HHHTT--------TCEEEEEESSHHHHHHHHTTS--------------SEEEESCTTTCC T ss_pred CCEEEEECCCCCHHHH----HHHHC--------CCEEEEEECCHHHHHHHHHCC--------------CEEEEEHHHHHC T ss_conf 9969995188869999----99975--------998999967256666654113--------------123310102213 Q ss_pred -CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf -98664189998168567653100011123442266665357777477065999999999614665788079997389 Q gi|254780836|r 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 286 -~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) .+...+||+|+++== ..|-. | .-.+++++-..|++ ||++.+..++ T Consensus 87 ~~~~~~~fD~I~~~~v--l~h~~-------------------------d-~~~~l~~i~~~Lkp----gG~lii~~~~ 132 (230) T 3cc8_A 87 MPYEEEQFDCVIFGDV--LEHLF-------------------------D-PWAVIEKVKPYIKQ----NGVILASIPN 132 (230) T ss_dssp CCSCTTCEEEEEEESC--GGGSS-------------------------C-HHHHHHHTGGGEEE----EEEEEEEEEC T ss_pred CCCCCCCEEEEEEEEE--EEECC-------------------------C-HHHHHHHHHHHCCC----CCEEEEEECC T ss_conf 8888786358874005--55548-------------------------8-68999999863386----8789999789 No 153 >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Probab=94.72 E-value=0.028 Score=32.94 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=48.9 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) .++|.|-.||+|.++... .+..+ ...++|.|+++.....|+.++--.+.... .........++. ... T Consensus 30 ~~rVLDvGcG~G~~~~~l----~~~~~------~~~v~gvD~s~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~-~~~ 96 (217) T 3jwh_A 30 ARRVIDLGCGQGNLLKIL----LKDSF------FEQITGVDVSYRSLEIAQERLDRLRLPRN--QWERLQLIQGAL-TYQ 96 (217) T ss_dssp CCEEEEETCTTCHHHHHH----HHCTT------CSEEEEEESCHHHHHHHHHHHTTCCCCHH--HHTTEEEEECCT-TSC T ss_pred CCEEEEEECCCCHHHHHH----HHHCC------CCEEECCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCH-HHC T ss_conf 398999818887999999----98476------52252103899999999998876245311--222210012664-344 Q ss_pred CCCCCEEEEEEECCCC Q ss_conf 9866418999816856 Q gi|254780836|r 286 LFTGKRFHYCLSNPPF 301 (674) Q Consensus 286 ~~~~~kFD~vlaNPPF 301 (674) .++..+||+|++.--+ T Consensus 97 ~~~~~~fD~I~~~~vl 112 (217) T 3jwh_A 97 DKRFHGYDAATVIEVI 112 (217) T ss_dssp CGGGCSCSEEEEESCG T ss_pred HHCCCCCCEEEEEHHH T ss_conf 0004765655010338 No 154 >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=94.66 E-value=0.023 Score=33.44 Aligned_cols=139 Identities=15% Similarity=0.066 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998 Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674) Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674) .|.++.-++... +| .|+|-.||+|.++.. +.+. ...++|.|+++..-.+|+.+. T Consensus 30 ~r~~i~~~~~~~-----------~g---rVLDiGcG~G~~~~~----la~~--------g~~v~gvD~S~~~l~~ar~~~ 83 (203) T 3h2b_A 30 DRVLIEPWATGV-----------DG---VILDVGSGTGRWTGH----LASL--------GHQIEGLEPATRLVELARQTH 83 (203) T ss_dssp THHHHHHHHHHC-----------CS---CEEEETCTTCHHHHH----HHHT--------TCCEEEECCCHHHHHHHHHHC T ss_pred CHHHHHHHCCCC-----------CC---CEEEECCCCCHHHHH----HHHC--------CCEEEEEECCHHHHHHHHHCC T ss_conf 399999851589-----------98---499973788799999----9977--------996999969788999997448 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 98088753345666682347545799986641899981685676531000111234422666653577774770659999 Q gi|254780836|r 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 (674) Q Consensus 260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl 339 (674) .+ .+...+|-.. -.+++.+||+|+++=-+- + +|+.. .-.++ T Consensus 84 --~~----------~~~~~~d~~~-l~~~~~~fD~I~~~~vl~--h----------------------~~~~d--~~~~l 124 (203) T 3h2b_A 84 --PS----------VTFHHGTITD-LSDSPKRWAGLLAWYSLI--H----------------------MGPGE--LPDAL 124 (203) T ss_dssp --TT----------SEEECCCGGG-GGGSCCCEEEEEEESSST--T----------------------CCTTT--HHHHH T ss_pred --CC----------CEEEECCCCC-CCCCCCCCCEEEEECCCC--C----------------------CCHHH--HHHHH T ss_conf --87----------3499862101-223456666899946511--4----------------------99799--99999 Q ss_pred HHHHHHHCCCCCCCCEEEEECC-CCC---CCCCCCC---CCHHHHHHHHHHCCCE Q ss_conf 9999961466578807999738-971---3477644---3268999999884946 Q gi|254780836|r 340 MHLANKLELPPNGGGRAAIVLS-SSP---LFNGRAG---SGESEIRRWLLENDLI 387 (674) Q Consensus 340 qh~i~klk~~~~~ggr~aIV~n-gs~---LF~G~ag---sGEs~IRk~lie~d~i 387 (674) +++...|+| ||++.+.+. +.. +...... -...++++.+-+.++- T Consensus 125 ~~~~~~Lkp----gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~ 175 (203) T 3h2b_A 125 VALRMAVED----GGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQ 175 (203) T ss_dssp HHHHHTEEE----EEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEE T ss_pred HHHHHHCCC----CCEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCE T ss_conf 999987689----829999995588712103765654058999999999987998 No 155 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Probab=94.63 E-value=0.095 Score=29.48 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=57.0 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCC Q ss_conf 0311766540468999999999853100533322550466667889999999898088753345666682--34754579 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSK 284 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~~ 284 (674) ..|.|-.||||-++.... .. . ..+.|.|+++...++|+.. +. .|+ ..+|-..- T Consensus 48 ~~vLDvGcG~G~~~~~la----~~----g----~~v~gvD~S~~~l~~a~~~----~~---------~~v~~~~~d~~~~ 102 (218) T 3ou2_A 48 GDVLELASGTGYWTRHLS----GL----A----DRVTALDGSAEMIAEAGRH----GL---------DNVEFRQQDLFDW 102 (218) T ss_dssp SEEEEESCTTSHHHHHHH----HH----S----SEEEEEESCHHHHHHHGGG----CC---------TTEEEEECCTTSC T ss_pred CCEEEECCCCCHHHHHHH----HC----C----CEEEEEECCCHHHHHHHHH----HC---------CCEEECCCHHHCC T ss_conf 979998898878999999----61----9----9899997831789999973----05---------5111001101012 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 9986641899981685676531000111234422666653577774770659-999999996146657880799973 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVL 360 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aIV~ 360 (674) + ++.+||.|+++=-+. | +| +.++ .++..+-..|+| ||++.++- T Consensus 103 ~--~~~~fD~V~~~~~l~--h----------------------~~---~~~~~~~~~~~~r~Lkp----GG~l~~~~ 146 (218) T 3ou2_A 103 T--PDRQWDAVFFAHWLA--H----------------------VP---DDRFEAFWESVRSAVAP----GGVVEFVD 146 (218) T ss_dssp C--CSSCEEEEEEESCGG--G----------------------SC---HHHHHHHHHHHHHHEEE----EEEEEEEE T ss_pred C--CCCCCEEEEEEEEHH--H----------------------CC---HHHHHHHHHHHHHHCCC----CEEEEEEE T ss_conf 5--688732899721266--4----------------------89---06899999999987398----83999997 No 156 >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Probab=94.60 E-value=0.15 Score=28.18 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=69.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCC-- Q ss_conf 0311766540468999999999853100533322550466667889999999898088753345666682--347545-- Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTL-- 282 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL-- 282 (674) .+|.|-.||+|++|+..+. .++ ...+.|.|+.....+-+...++-.+.... ...+..|| ..||.. T Consensus 51 p~iLeIGcG~G~~l~~lA~----~~p------~~~~iGiEi~~~~v~~~~~ri~~~~~~~a-~~~~l~Ni~~~~~da~~~ 119 (246) T 2vdv_E 51 VTIADIGCGFGGLMIDLSP----AFP------EDLILGMEIRVQVTNYVEDRIIALRNNTA-SKHGFQNINVLRGNAMKF 119 (246) T ss_dssp EEEEEETCTTSHHHHHHHH----HST------TSEEEEEESCHHHHHHHHHHHHHHHHTC--CCSTTTTEEEEECCTTSC T ss_pred CEEEEECCCCCHHHHHHHH----HCC------CCCEEEEECCHHHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCHHHH T ss_conf 8799982689989999998----689------87589885036899999999999987478-774987199993734888 Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 79998664189998168567653100011123442266665357777477065999999999614665788079997389 Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) -.+.++...+|.|..|-| -+|-+. .+. ..|.- + --||..+...|++ ||++-++... T Consensus 120 l~~~~~~~s~d~v~i~FP--DPw~K~------rh~---krRli------~---~~fl~~~~~~Lkp----gG~l~~~TD~ 175 (246) T 2vdv_E 120 LPNFFEKGQLSKMFFCFP--DPHFKQ------RKH---KARII------T---NTLLSEYAYVLKE----GGVVYTITDV 175 (246) T ss_dssp GGGTSCTTCEEEEEEESC--CCC---------------CSSCC------C---HHHHHHHHHHEEE----EEEEEEEESC T ss_pred HHHHCCCCCCCEEEEECC--CCCCCC------CCH---HHHHC------C---HHHHHHHHHHHCC----CCEEEEEECC T ss_conf 887514677673489889--887731------101---13432------4---7789999997066----9899999799 No 157 >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Probab=94.51 E-value=0.24 Score=26.89 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=80.4 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++....+ .+++ ....|+|+ |..-.+++.+.--.|.... -....||-+..+ T Consensus 166 ~~~vLDvG~G~G~~~~~l~~----~~p~------~~~~~~Dl-p~~~~~a~~~~~~~~l~~r------v~~~~~d~~~~~ 228 (335) T 2r3s_A 166 PLKVLDISASHGLFGIAVAQ----HNPN------AEIFGVDW-ASVLEVAKENARIQGVASR------YHTIAGSAFEVD 228 (335) T ss_dssp CSEEEEETCTTCHHHHHHHH----HCTT------CEEEEEEC-HHHHHHHHHHHHHHTCGGG------EEEEESCTTTSC T ss_pred CCEEEEECCCCCHHHHHHHH----HCCC------CCEEEECC-HHHHHHHHHHHHHHCCCEE------EEECCCCHHHCC T ss_conf 98799979996299999998----5898------77377446-7888999987886087435------653245332055 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---C Q ss_conf 9866418999816856765310001112344226666535777747706599999999961466578807999738---9 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---S 362 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---g 362 (674) . ...||+|++.--+- +|..+. . -.+|+++-..|+| ||++.|+-. . T Consensus 229 ~--~~~~D~v~~~~vlh-~~~~~~-~------------------------~~~L~~~~~~L~p----gG~l~i~e~~~~~ 276 (335) T 2r3s_A 229 Y--GNDYDLVLLPNFLH-HFDVAT-C------------------------EQLLRKIKTALAV----EGKVIVFDFIPNS 276 (335) T ss_dssp C--CSCEEEEEEESCGG-GSCHHH-H------------------------HHHHHHHHHHEEE----EEEEEEEECCCCT T ss_pred C--CCCHHHHHHHHHHH-HCCHHH-H------------------------HHHHHHHHHHCCC----CCEEEEEECCCCC T ss_conf 4--33135888630044-324567-9------------------------9999999986098----9589999634687 Q ss_pred ---CCCC------------CCCCCCCHHHHHHHHHHCCC-EEEEEECCCCC Q ss_conf ---7134------------77644326899999988494-68883176776 Q gi|254780836|r 363 ---SPLF------------NGRAGSGESEIRRWLLENDL-IEAIVALPTDL 397 (674) Q Consensus 363 ---s~LF------------~G~agsGEs~IRk~lie~d~-ieaII~LP~~l 397 (674) ++.+ .++..-.+.++|+++-+.++ +..|+.+|..- T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~v~~~~~~~ 327 (335) T 2r3s_A 277 DRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQ 327 (335) T ss_dssp TSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSS T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 777855678999999873889876999999999997799168999878997 No 158 >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Probab=94.45 E-value=0.24 Score=26.81 Aligned_cols=46 Identities=11% Similarity=-0.076 Sum_probs=31.5 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH Q ss_conf 640311766540468999999999853100533322550466667889999999898 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674) .+.+|.|-+||+|.+...+ ... ....+.|.++++.+.+.|+.++-- T Consensus 55 ~g~~vLDlGCG~G~~~~~~-------a~~----~~~~V~giD~S~~~i~~a~~~~~~ 100 (263) T 2a14_A 55 QGDTLIDIGSGPTIYQVLA-------ACD----SFQDITLSDFTDRNREELEKWLKK 100 (263) T ss_dssp CEEEEEESSCTTCCGGGTT-------GGG----TEEEEEEEESCHHHHHHHHHHHHT T ss_pred CCCEEEEECCCCCHHHHHH-------HHH----CCCEEEEECCCHHHHHHHHHHHHH T ss_conf 9988999788862899999-------984----797689951899999999999986 No 159 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Probab=94.42 E-value=0.038 Score=32.05 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=60.6 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH--HHCCCCCC-CCCCCCCCCCCCCC Q ss_conf 4031176654046899999999985310053332255046666788999999989--80887533-45666682347545 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML--IRRLESDP-RRDLSKNIQQGSTL 282 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl--i~g~~~d~-~~~~~~NI~~GdTL 282 (674) ..+|+|-|||.||-|. ++++ .+ ...+.|.++++++...|+.-.- -.+..... ..+.......+|.+ T Consensus 49 ~~~VLDlgcG~GgDl~---K~~~-----~~---~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~~~~~~~~~~~~~~~d~~ 117 (302) T 2vdw_A 49 KRKVLAIDFGNGADLE---KYFY-----GE---IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF 117 (302) T ss_dssp CCEEEETTCTTTTTHH---HHHH-----TT---CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH T ss_pred CCEEEEEEEEECHHHH---HHHH-----CC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCHH T ss_conf 9979999500045279---9996-----69---98899997989999999999997212433100013305999861132 Q ss_pred CC---CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE- Q ss_conf 79---99866418999816856765310001112344226666535777747706599999999961466578807999- Q gi|254780836|r 283 SK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI- 358 (674) Q Consensus 283 ~~---d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI- 358 (674) .. ..+++.+||+|.+.--+- +--+ | .. ...|++++-..|+| ||+..+ T Consensus 118 ~~~~~~~~~~~~FDvVs~qfalH--y~f~--------------------~-~~--~~~~l~ni~~~Lkp----gG~fi~t 168 (302) T 2vdw_A 118 VSSVREVFYFGKFNIIDWQFAIH--YSFH--------------------P-RH--YATVMNNLSELTAS----GGKVLIT 168 (302) T ss_dssp HHHHHTTCCSSCEEEEEEESCGG--GTCS--------------------T-TT--HHHHHHHHHHHEEE----EEEEEEE T ss_pred HHHHHHHCCCCCEEEEEECCHHH--HHCC--------------------C-HH--HHHHHHHHHHHCCC----CCEEEEE T ss_conf 44455304789756999814065--6088--------------------5-89--99999999961389----9689999 Q ss_pred ECCC Q ss_conf 7389 Q gi|254780836|r 359 VLSS 362 (674) Q Consensus 359 V~ng 362 (674) +++| T Consensus 169 ~~~~ 172 (302) T 2vdw_A 169 TMDG 172 (302) T ss_dssp EECH T ss_pred ECCH T ss_conf 8069 No 160 >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Probab=94.36 E-value=0.25 Score=26.67 Aligned_cols=106 Identities=11% Similarity=-0.050 Sum_probs=58.3 Q ss_pred CCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 75368-17999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 175 EDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 175 GeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) |++-+ |.-+.++ .++|.. ...++.+|+|-.||||-+-....+.+ +. ...++|.|++++... T Consensus 55 ~~~is~P~~~a~~-le~L~~--------~~~pg~~VLdiG~GsGy~ta~la~lv----g~-----~g~V~~iE~~~~l~~ 116 (226) T 1i1n_A 55 QATISAPHMHAYA-LELLFD--------QLHEGAKALDVGSGSGILTACFARMV----GC-----TGKVIGIDHIKELVD 116 (226) T ss_dssp TEEECCHHHHHHH-HHHTTT--------TSCTTCEEEEETCTTSHHHHHHHHHH----CT-----TCEEEEEESCHHHHH T ss_pred CCEECHHHHHHHH-HHHHHH--------HCCCCCEEEEECCCCCHHHHHHHHHC----CC-----CCEEEEECCCHHHHH T ss_conf 9775588999999-997253--------08999989997788899999999970----88-----864999868899999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 999998980887533456666823475457999866418999816856 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674) .|+.|+--.+.... .........||-..- ......||.|+.+-+. T Consensus 117 ~a~~~l~~~~~~~~--~~~~~~~~~gd~~~~-~~~~~~fD~I~~~~~~ 161 (226) T 1i1n_A 117 DSVNNVRKDDPTLL--SSGRVQLVVGDGRMG-YAEEAPYDAIHVGAAA 161 (226) T ss_dssp HHHHHHHHHCTHHH--HTSSEEEEESCGGGC-CGGGCCEEEEEECSBB T ss_pred HHHHHHHHCCCCCC--EEEEEEEEECCCCCC-CCCCCCEEEEEECCCH T ss_conf 99999865486431--023467996564566-6556760168752677 No 161 >1r18_A Protein-L-isoaspartate(D-aspartate)-O- methyltransferase; isomerization, protein repair, S- adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Probab=94.30 E-value=0.17 Score=27.90 Aligned_cols=109 Identities=13% Similarity=0.006 Sum_probs=60.3 Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) .|++- .|.-++ .|.++|.. .-.+..+|+|-.||||-+-....+.+.. .+......++|.|++++.+ T Consensus 61 ~~~~is~P~~~a-~~l~~L~~--------~l~pg~~VLeIG~GtGy~ta~la~l~g~----~g~~~~~~V~~iE~~~~l~ 127 (227) T 1r18_A 61 GGVTISAPHMHA-FALEYLRD--------HLKPGARILDVGSGSGYLTACFYRYIKA----KGVDADTRIVGIEHQAELV 127 (227) T ss_dssp TTEEECCHHHHH-HHHHHTTT--------TCCTTCEEEEESCTTSHHHHHHHHHHHH----SCCCTTCEEEEEESCHHHH T ss_pred CCCEECCHHHHH-HHHHHHHH--------HCCCCCEEEEECCCCCHHHHHHHHHHHH----CCCCCCCEEEEEECCHHHH T ss_conf 998863369999-99997675--------3899988999579977999999998533----1577766899994789999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf 99999989808875334566668--2347545799986641899981685 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPP 300 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPP 300 (674) ..|+.|+--++... ....| +..||-..- ......||.|+.+.- T Consensus 128 ~~A~~~l~~~~~~~----l~~~nv~~~~~D~~~g-~~~~~~fD~I~v~~a 172 (227) T 1r18_A 128 RRSKANLNTDDRSM----LDSGQLLIVEGDGRKG-YPPNAPYNAIHVGAA 172 (227) T ss_dssp HHHHHHHHHHHHHH----HHHTSEEEEESCGGGC-CGGGCSEEEEEECSC T ss_pred HHHHHHHHHCCCHH----CCCCCEEEEECCCCCC-CCCCCCCCEEEEEEC T ss_conf 99999997605102----0566369997784557-765565236888511 No 162 >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides 2} Probab=94.21 E-value=0.031 Score=32.65 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=46.2 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCC Q ss_conf 403117665404689999999998531005333225504666678899999998980887533456666823475-4579 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-TLSK 284 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~Gd-TL~~ 284 (674) +.+|+|-.||||.+.... .+. + ..+.|.|+++...+.|+..+-=.+. .+...+ .... T Consensus 46 g~~vLdvGcG~G~~~~~l----~~~----g----~~v~g~D~S~~ml~~a~~~~~~~~~----------~~~~~~~~~~~ 103 (261) T 3iv6_A 46 GSTVAVIGASTRFLIEKA----LER----G----ASVTVFDFSQRMCDDLAEALADRCV----------TIDLLDITAEI 103 (261) T ss_dssp TCEEEEECTTCHHHHHHH----HHT----T----CEEEEEESCHHHHHHHHHHTSSSCC----------EEEECCTTSCC T ss_pred CCEEEEECCCCCHHHHHH----HHC----C----CEEEEECCCHHHHHHHHHHHHHCCC----------CCCEEECCHHH T ss_conf 997999889788899999----967----9----9899977789999999997464056----------53302122532 Q ss_pred CCCCCCEEEEEEECCCC Q ss_conf 99866418999816856 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPF 301 (674) Q Consensus 285 d~~~~~kFD~vlaNPPF 301 (674) ..+.+..||.|+++=.| T Consensus 104 ~~~~~~~fD~Vv~~~~~ 120 (261) T 3iv6_A 104 PKELAGHFDFVLNDRLI 120 (261) T ss_dssp CGGGTTCCSEEEEESCG T ss_pred CCCCCCCCCEEEECCHH T ss_conf 33457884689981378 No 163 >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A* Probab=94.11 E-value=0.16 Score=27.92 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=69.7 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCC--CC Q ss_conf 311766540468999999999853100533322550466667889999999898088753345666682--34754--57 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGST--LS 283 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdT--L~ 283 (674) .|.|-.||+|.+|+..+. .+++ ..+.|.|+.+...+-|....--.|+ .|+ ..||. +. T Consensus 37 liLEIGcG~G~~l~~~A~----~~P~------~~~iGiEi~~~~v~~a~~~~~~~~l---------~Ni~~~~~da~~~l 97 (218) T 3dxy_A 37 VTLEIGFGMGASLVAMAK----DRPE------QDFLGIEVHSPGVGACLASAHEEGL---------SNLRVMCHDAVEVL 97 (218) T ss_dssp EEEEESCTTCHHHHHHHH----HCTT------SEEEEECSCHHHHHHHHHHHHHTTC---------SSEEEECSCHHHHH T ss_pred EEEEECCCCCHHHHHHHH----HCCC------CCEEEEEEECCCEEEEHHHCCHHHH---------CCCCEECCCHHHHH T ss_conf 399972688899999999----6899------9889999723505530321201210---------45505645389999 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC Q ss_conf 99986641899981685676531000111234422666653577774770659999999996146657880799973897 Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 (674) Q Consensus 284 ~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs 363 (674) ...+++..||.|..|-|= +|-+.+ .++. |.- +--|+.-+...|++ ||++-+..+.. T Consensus 98 ~~~~~~~s~d~I~i~FPD--PWpKkk-----h~Kr----Rlv---------~~~fl~~l~~~Lk~----gG~l~l~TD~~ 153 (218) T 3dxy_A 98 HKMIPDNSLRMVQLFFPD--PWHKAR-----HNKR----RIV---------QVPFAELVKSKLQL----GGVFHMATDWE 153 (218) T ss_dssp HHHSCTTCEEEEEEESCC--CCCSGG-----GGGG----SSC---------SHHHHHHHHHHEEE----EEEEEEEESCH T ss_pred HHHCCCCCCCCCEECCCC--CCCCCC-----CCCC----CCC---------CHHHHHHHHHHCCC----CCEEEEEECCH T ss_conf 875245645443231688--777743-----2462----556---------15589999986288----98999997979 Q ss_pred CC Q ss_conf 13 Q gi|254780836|r 364 PL 365 (674) Q Consensus 364 ~L 365 (674) .+ T Consensus 154 ~Y 155 (218) T 3dxy_A 154 PY 155 (218) T ss_dssp HH T ss_pred HH T ss_conf 99 No 164 >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Probab=93.81 E-value=0.047 Score=31.48 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=40.2 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) +|+|-.||+|.++... .+ .. ..+.|.|++++..+.|+..+- .+ -+...++ +. +.. T Consensus 45 ~VLDiGCG~G~~~~~l----~~----~~----~~v~giD~s~~~l~~a~~~~~---~~--------~~~~~~~-~~-~~~ 99 (250) T 2p7i_A 45 NLLELGSFKGDFTSRL----QE----HF----NDITCVEASEEAISHAQGRLK---DG--------ITYIHSR-FE-DAQ 99 (250) T ss_dssp CEEEESCTTSHHHHHH----TT----TC----SCEEEEESCHHHHHHHHHHSC---SC--------EEEEESC-GG-GCC T ss_pred CEEEEECCCCHHHHHH----HH----HC----CEEEEEECCHHHHHHHHHHHH---CC--------CCEEECC-HH-HCC T ss_conf 3999928987999999----95----09----979999671688889998630---35--------4202022-22-126 Q ss_pred CCCEEEEEEEC Q ss_conf 66418999816 Q gi|254780836|r 288 TGKRFHYCLSN 298 (674) Q Consensus 288 ~~~kFD~vlaN 298 (674) ...+||+|++. T Consensus 100 ~~~~fD~I~~~ 110 (250) T 2p7i_A 100 LPRRYDNIVLT 110 (250) T ss_dssp CSSCEEEEEEE T ss_pred CCCCCCHHHHH T ss_conf 65566578864 No 165 >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Probab=93.79 E-value=0.098 Score=29.39 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=60.6 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) +|+|-.||||.++.... + .+ ..++|.|+++...++|+.+.--.+.... ..-....||-..-+ T Consensus 85 ~vLDlGcG~G~~~~~la----~----~g----~~v~gvD~s~~ml~~a~~~~~~~~~~~~----~~~~~~~~d~~~~~-- 146 (299) T 3g2m_A 85 PVLELAAGMGRLTFPFL----D----LG----WEVTALELSTSVLAAFRKRLAEAPADVR----DRCTLVQGDMSAFA-- 146 (299) T ss_dssp CEEEETCTTTTTHHHHH----T----TT----CCEEEEESCHHHHHHHHHHHHTSCHHHH----TTEEEEECBTTBCC-- T ss_pred CEEEEECCCCHHHHHHH----H----CC----CEEEEEECCHHHHHHHHHHHHHCCCCCC----CCEEEEECCHHHCC-- T ss_conf 79999166778999999----7----79----9799996999999999999986476632----20447860321067-- Q ss_pred CCCEEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 664189998168-56765310001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 288 TGKRFHYCLSNP-PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 288 ~~~kFD~vlaNP-PFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .+.+||.|++.- -+. + +|+ .....+++.+-..|+| ||+..+-+. T Consensus 147 ~~~~fD~v~~~~~~~~--~----------------------~~~--~~~~~~l~~~~~~L~p----gG~l~~~~~ 191 (299) T 3g2m_A 147 LDKRFGTVVISSGSIN--E----------------------LDE--ADRRGLYASVREHLEP----GGKFLLSLA 191 (299) T ss_dssp CSCCEEEEEECHHHHT--T----------------------SCH--HHHHHHHHHHHHHEEE----EEEEEEEEE T ss_pred CCCCCCEEEEEECCCC--C----------------------CCH--HHHHHHHHHHHHHCCC----CCEEEEEEE T ss_conf 4555312489713600--3----------------------661--8899999999998487----828999987 No 166 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Probab=93.49 E-value=0.18 Score=27.70 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=43.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|+|--||||.+=..|.+ .+ ...+||.|.++ ...+++.+.--+|.... -.+..|+.- +-. T Consensus 59 ~~VLDiG~G~G~ls~~aa~--------~G---a~~V~ave~s~-~~~~a~~~~~~n~~~~~------i~~~~~~~~-~l~ 119 (340) T 1or8_A 59 KVVLDVGSGTGILCMFAAK--------AG---ARKVIGIECSS-ISDYAVKIVKANKLDHV------VTIIKGKVE-EVE 119 (340) T ss_dssp CEEEEETCTTSHHHHHHHH--------TT---CSEEEEEECST-HHHHHHHHHHHTTCTTT------EEEEESCTT-TCC T ss_pred CEEEEECCCCCHHHHHHHH--------CC---CCEEEEECCHH-HHHHHHHHHHHCCCCCE------EEEEEEEEE-ECC T ss_conf 9799983788799999998--------08---98899964619-99999999997287832------799973134-303 Q ss_pred CCCCEEEEEEECC Q ss_conf 8664189998168 Q gi|254780836|r 287 FTGKRFHYCLSNP 299 (674) Q Consensus 287 ~~~~kFD~vlaNP 299 (674) ++..+||+|++.+ T Consensus 120 ~~~~~~DvivsE~ 132 (340) T 1or8_A 120 LPVEKVDIIISEW 132 (340) T ss_dssp CSSSCEEEEEECC T ss_pred CCCCCCCEEEEEE T ss_conf 7865310799750 No 167 >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Probab=93.11 E-value=0.22 Score=27.04 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=47.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) ..|+|-.||||.+=..|.+ .+ ...+||.|.++. ...|+.+.--.|.... -.+..||...- . T Consensus 40 ~~VLDiGcGtG~ls~~aa~--------~G---a~~V~a~d~s~~-~~~a~~~~~~~~~~~~------i~~i~~~~~~~-~ 100 (328) T 1g6q_1 40 KIVLDVGCGTGILSMFAAK--------HG---AKHVIGVDMSSI-IEMAKELVELNGFSDK------ITLLRGKLEDV-H 100 (328) T ss_dssp CEEEEETCTTSHHHHHHHH--------TC---CSEEEEEESSTH-HHHHHHHHHHTTCTTT------EEEEESCTTTS-C T ss_pred CEEEEECCCCCHHHHHHHH--------CC---CCEEEEEECHHH-HHHHHHHHHHCCCCCE------EEEEEEEEECC-C T ss_conf 9999978997799999997--------19---998999959799-9999999987387623------89997121005-5 Q ss_pred CCCCEEEEEEECCCCCC Q ss_conf 86641899981685676 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGK 303 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~ 303 (674) .+..+||+|++++.... T Consensus 101 ~~~~~~D~vvse~~~~~ 117 (328) T 1g6q_1 101 LPFPKVDIIISEWMGYF 117 (328) T ss_dssp CSSSCEEEEEECCCBTT T ss_pred CCCCCCCEEEEEECCEE T ss_conf 77666429999733203 No 168 >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Probab=93.00 E-value=0.26 Score=26.65 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=50.6 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579 Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674) Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674) ...+|.|-.||+|.++....+ .+++ +...++|+ |....+++.++--.|.... -....||-+.. T Consensus 179 ~~~~vlDvGgG~G~~~~~l~~----~~p~------~~~~~~Dl-p~~~~~a~~~~~~~~l~~r------v~~~~gd~~~~ 241 (352) T 3mcz_A 179 RARTVIDLAGGHGTYLAQVLR----RHPQ------LTGQIWDL-PTTRDAARKTIHAHDLGGR------VEFFEKNLLDA 241 (352) T ss_dssp TCCEEEEETCTTCHHHHHHHH----HCTT------CEEEEEEC-GGGHHHHHHHHHHTTCGGG------EEEEECCTTCG T ss_pred CCCEEEEECCCCCHHHHHHHH----HCCE------EEEEEEEC-HHHHHHHHHHHHHCCCCCC------CEEEECCCCCC T ss_conf 799899988988799999997----5983------48999601-9999999999986388655------25775441113 Q ss_pred CCCCCCEEEEEEECCCC Q ss_conf 99866418999816856 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPF 301 (674) Q Consensus 285 d~~~~~kFD~vlaNPPF 301 (674) ...++..||++++.--+ T Consensus 242 ~~~~~~~~D~v~~~~vl 258 (352) T 3mcz_A 242 RNFEGGAADVVMLNDCL 258 (352) T ss_dssp GGGTTCCEEEEEEESCG T ss_pred CCCCCCCCCEEEECCEE T ss_conf 45667776368751312 No 169 >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Probab=92.79 E-value=0.47 Score=24.96 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=76.7 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCC Q ss_conf 3117665404689999999998531005333225504666678899999998980887533456666823475457-999 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDL 286 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~-~d~ 286 (674) -|.|-.||+|.+++..+. .++ ...+.|.|+.+...+.|.....-.|+..- .+..||... .+. T Consensus 41 ~vLEIGcG~G~~~~~lA~----~~p------~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv-------~~~~~da~~l~~~ 103 (213) T 2fca_A 41 IHIEVGTGKGQFISGMAK----QNP------DINYIGIELFKSVIVTAVQKVKDSEAQNV-------KLLNIDADTLTDV 103 (213) T ss_dssp EEEEECCTTSHHHHHHHH----HCT------TSEEEEECSCHHHHHHHHHHHHHSCCSSE-------EEECCCGGGHHHH T ss_pred EEEEEECCCCHHHHHHHH----HCC------CCCEEEEECCHHHHHHHHHHHHHHCCCCE-------EEEECCHHHHHHH T ss_conf 299980358899999998----689------98289998359999999999998388544-------6784365887751 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973897134 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674) ++...||.|..+-|- +|-+.. .++ .|.- +--|+..+-..|+| ||++-+..+...++ T Consensus 104 ~~~~~~d~v~i~fpd--Pw~k~~-----h~k----rRl~---------~~~~l~~i~r~Lkp----gG~l~i~TD~~~y~ 159 (213) T 2fca_A 104 FEPGEVKRVYLNFSD--PWPKKR-----HEK----RRLT---------YSHFLKKYEEVMGK----GGSIHFKTDNRGLF 159 (213) T ss_dssp CCTTSCCEEEEESCC--CCCSGG-----GGG----GSTT---------SHHHHHHHHHHHTT----SCEEEEEESCHHHH T ss_pred CCCCCEEEEEEECCC--CCCCCC-----CHH----HHHH---------HHHHHHHHHHHCCC----CCEEEEEECCHHHH T ss_conf 377643588871356--553100-----003----6542---------18999999983799----98899997999999 Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 77644326899999988494688831 Q gi|254780836|r 367 NGRAGSGESEIRRWLLENDLIEAIVA 392 (674) Q Consensus 367 ~G~agsGEs~IRk~lie~d~ieaII~ 392 (674) ..+...+-+.+.....++ T Consensus 160 --------~~~~~~~~~~~~~~~~~~ 177 (213) T 2fca_A 160 --------EYSLKSFSEYGLLLTYVS 177 (213) T ss_dssp --------HHHHHHHHHHTCEEEEEE T ss_pred --------HHHHHHHHHCCCEECCCC T ss_conf --------999999997877211377 No 170 >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661} Probab=92.58 E-value=0.5 Score=24.78 Aligned_cols=99 Identities=10% Similarity=-0.079 Sum_probs=60.4 Q ss_pred CCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 7536-817999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 175 EDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 175 Geff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) |++. .|..+.+ |.+.+ ...+..+|+|-.||||=+-....+.+ +. ...+++.|++++... T Consensus 57 ~~~i~~P~~~a~-~l~~l----------~l~~g~~VLeIGtGsGY~ta~la~l~----g~-----~g~V~~iE~~~~l~~ 116 (215) T 2yxe_A 57 GQTISAIHMVGM-MCELL----------DLKPGMKVLEIGTGCGYHAAVTAEIV----GE-----DGLVVSIERIPELAE 116 (215) T ss_dssp TEEECCHHHHHH-HHHHT----------TCCTTCEEEEECCTTSHHHHHHHHHH----CT-----TSEEEEEESCHHHHH T ss_pred CCCCCCHHHHHH-HHHHH----------CCCCCCEEEEECCCCCHHHHHHHHHH----CC-----CCEEEEEECCHHHHH T ss_conf 861287799999-99863----------58999889982788419999999984----88-----871899952889999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 999998980887533456666823475457999866418999816856 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674) .++.++.-.+.... -+..||-. ........||.|+.+... T Consensus 117 ~a~~~l~~~~~~nv-------~~~~gd~~-~g~~~~~~fD~I~v~~~~ 156 (215) T 2yxe_A 117 KAERTLRKLGYDNV-------IVIVGDGT-LGYEPLAPYDRIYTTAAG 156 (215) T ss_dssp HHHHHHHHHTCTTE-------EEEESCGG-GCCGGGCCEEEEEESSBB T ss_pred HHHHHHHHCCCCCE-------EEEECCCC-CCCCCCCCCCEEEEECCC T ss_conf 99999986156644-------99988865-575346886489994561 No 171 >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A* Probab=92.55 E-value=0.33 Score=25.94 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=44.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCC Q ss_conf 0311766540468999999999853100533322550466667889999999898088753345666682--34754579 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSK 284 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~~ 284 (674) .+|+|-.||||.+-..|.+ .+ ...+||.|.++.... ++-+..-.+.. .+| ..||.. + T Consensus 66 k~VLDlGcGtG~ls~~aA~--------~G---a~~V~avd~s~~~~~-a~~~~~~~~~~--------~~i~~i~~d~~-~ 124 (340) T 2fyt_A 66 KVVLDVGCGTGILSMFAAK--------AG---AKKVLGVDQSEILYQ-AMDIIRLNKLE--------DTITLIKGKIE-E 124 (340) T ss_dssp CEEEEETCTTSHHHHHHHH--------TT---CSEEEEEESSTHHHH-HHHHHHHTTCT--------TTEEEEESCTT-T T ss_pred CEEEEECCCCCHHHHHHHH--------CC---CCEEEEEECCHHHHH-HHHHHHHHCCC--------CCEEEEEEEHH-H T ss_conf 9899932774799999997--------59---988999809899999-99999974547--------75168981488-7 Q ss_pred CCCCCCEEEEEEECCCCCC Q ss_conf 9986641899981685676 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~ 303 (674) -.++..+||+|++++.+.. T Consensus 125 l~~~~~~~D~ivse~~~~~ 143 (340) T 2fyt_A 125 VHLPVEKVDVIISEWMGYF 143 (340) T ss_dssp SCCSCSCEEEEEECCCBTT T ss_pred CCCCCCCCCEEEEECCCEE T ss_conf 6476466768999632100 No 172 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Probab=92.53 E-value=0.03 Score=32.72 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=57.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-C Q ss_conf 031176654046899999999985310053332255046666788999999989808875334566668234754579-9 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D 285 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d 285 (674) .+|+|-.||+|.++-.. .+. + ..++|-|+++.....|+.+. + ...+|.+.. . T Consensus 43 ~~vLDiGCG~G~~~~~l----~~~----g----~~v~GiD~s~~~i~~a~~~~-----~----------~~~~~~~~~~~ 95 (240) T 3dli_A 43 RRVLDIGCGRGEFLELC----KEE----G----IESIGVDINEDMIKFCEGKF-----N----------VVKSDAIEYLK 95 (240) T ss_dssp SCEEEETCTTTHHHHHH----HHH----T----CCEEEECSCHHHHHHHHTTS-----E----------EECSCHHHHHH T ss_pred CEEEEECCCCCHHHHHH----HHC----C----CEEEEEECCHHHHHHHHHHC-----C----------CCHHHHHHHHC T ss_conf 96999738785999999----977----9----95999967707878876511-----1----------00100666402 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 98664189998168567653100011123442266665357777477065-99999999961466578807999738 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~-~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .+++.+||+|++.=-+- + +|+ .+ .-+++.+...|+| ||++.+..| T Consensus 96 ~~~~~~fD~V~~~~vle-------------H-----------~~~---~~~~~~l~e~~r~Lkp----gG~li~~~p 141 (240) T 3dli_A 96 SLPDKYLDGVMISHFVE-------------H-----------LDP---ERLFELLSLCYSKMKY----SSYIVIESP 141 (240) T ss_dssp TSCTTCBSEEEEESCGG-------------G-----------SCG---GGHHHHHHHHHHHBCT----TCCEEEEEE T ss_pred CCCCCCCCEEEEECEEE-------------E-----------CCH---HHHHHHHHHHHHHCCC----CCEEEEEEC T ss_conf 35434765887621012-------------0-----------682---7899999999986084----978999977 No 173 >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} Probab=92.53 E-value=0.5 Score=24.74 Aligned_cols=155 Identities=11% Similarity=0.112 Sum_probs=77.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-.||+|..+....+ .++. ..+-++++ +....+++.+.--.+.... -....||-+..+. T Consensus 181 ~~vLDiG~G~G~~~~~la~----~~p~------~~~~~~d~-~~~~~~~~~~~~~~~~~~r------v~~~~~d~~~~~~ 243 (363) T 3dp7_A 181 KRLLDIGGNTGKWATQCVQ----YNKE------VEVTIVDL-PQQLEMMRKQTAGLSGSER------IHGHGANLLDRDV 243 (363) T ss_dssp SEEEEESCTTCHHHHHHHH----HSTT------CEEEEEEC-HHHHHHHHHHHTTCTTGGG------EEEEECCCCSSSC T ss_pred CEEEEECCCCHHHHHHHHH----HCCC------EEEEEECC-CHHHHHHHHHHHHCCCCCC------EEEEECCCCCCCC T ss_conf 9899979995299999998----6897------39999757-1167999988765278772------6999733335667 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC---CCC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973---897 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL---SSS 363 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~---ngs 363 (674) .....||+++..--+. .|..+. -..+++++...|+| ||++.|+- +.. T Consensus 244 ~~~~~~d~~~~~~~l~-~~~~~~-------------------------~~~iL~~i~~~L~p----gG~lli~d~~~~~~ 293 (363) T 3dp7_A 244 PFPTGFDAVWMSQFLD-CFSEEE-------------------------VISILTRVAQSIGK----DSKVYIMETLWDRQ 293 (363) T ss_dssp CCCCCCSEEEEESCST-TSCHHH-------------------------HHHHHHHHHHHCCT----TCEEEEEECCTTSC T ss_pred CCCCCCEEEEEECHHH-CCCHHH-------------------------HHHHHHHHHHHCCC----CCEEEEEEECCCCC T ss_conf 8999844897710120-256144-------------------------54579999966888----82899998315898 Q ss_pred C-----------------CCCCCCC-CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCC Q ss_conf 1-----------------3477644-3268999999884946888317677655788616999994688 Q gi|254780836|r 364 P-----------------LFNGRAG-SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 (674) Q Consensus 364 ~-----------------LF~G~ag-sGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K 414 (674) + +..|+.. -.+.+++++|-+.++ .|+.. ..++|...+|+...++. T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~aGF--~v~~~----~~~~~~~~~~l~~r~k~ 356 (363) T 3dp7_A 294 RYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL--EVEEI----QDNIGLGHSILQCRLKE 356 (363) T ss_dssp SSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE--EESCC----CCCBTTTBEEEEEEEC- T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC--EEEEE----EECCCCCEEEEEEEECC T ss_conf 87624689999889999862589877899999999997799--79999----94699980899999877 No 174 >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Probab=92.13 E-value=0.56 Score=24.43 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=45.2 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++....+ .+++ +...|+|+ |.....++.+.--.|.... -.+..||-+.+ T Consensus 191 ~~~vlDiG~G~G~~~~~l~~----~~p~------~~~~~~Dl-p~~~~~a~~~~~~~~l~~r------v~~~~gD~~~~- 252 (359) T 1x19_A 191 VKKMIDVGGGIGDISAAMLK----HFPE------LDSTILNL-PGAIDLVNENAAEKGVADR------MRGIAVDIYKE- 252 (359) T ss_dssp CCEEEEESCTTCHHHHHHHH----HCTT------CEEEEEEC-GGGHHHHHHHHHHTTCTTT------EEEEECCTTTS- T ss_pred CCEEEECCCCCCHHHHHHHH----HCCC------EEEEEECC-HHHHHHHHHHHHHCCCCCC------CEEEECCHHHC- T ss_conf 87799767989799999998----3992------28998166-8889999986675077634------52783457763- Q ss_pred CCCCCEEEEEEEC Q ss_conf 9866418999816 Q gi|254780836|r 286 LFTGKRFHYCLSN 298 (674) Q Consensus 286 ~~~~~kFD~vlaN 298 (674) .++ .||+|+.. T Consensus 253 ~~p--~~D~v~~~ 263 (359) T 1x19_A 253 SYP--EADAVLFC 263 (359) T ss_dssp CCC--CCSEEEEE T ss_pred CCC--CCCEEEEE T ss_conf 578--76504556 No 175 >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Probab=91.66 E-value=0.051 Score=31.21 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=51.3 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC Q ss_conf 7764031176654046899999999985310053332255046666788999999989808875334566668--23475 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGS 280 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N--I~~Gd 280 (674) ++...+|+|-|||.|.-=..... . + ..+.+.|.||..+++..-++---..+.........| +..|| T Consensus 86 ~~~~~~VlDaTaGlG~Da~vlA~----~----G----~~V~~iEr~p~l~~ll~d~l~ra~~~~~~~~~~~~ri~l~~~D 153 (258) T 2oyr_A 86 GDYLPDVVDATAGLGRDAFVLAS----V----G----CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258) T ss_dssp TTBCCCEEETTCTTCHHHHHHHH----H----T----CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC T ss_pred CCCCCEEEECCCCCHHHHHHHHH----C----C----CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCC T ss_conf 78998489878774299999997----7----9----9689984799999999999999872737789986323787387 Q ss_pred CCCCCCCCCCEEEEEEECCCCCC Q ss_conf 45799986641899981685676 Q gi|254780836|r 281 TLSKDLFTGKRFHYCLSNPPFGK 303 (674) Q Consensus 281 TL~~d~~~~~kFD~vlaNPPFg~ 303 (674) ++.-=.-....||+|.-.|+|-. T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp~ 176 (258) T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPH 176 (258) T ss_dssp HHHHSTTCSSCCSEEEECCCCCC T ss_pred HHHHHHHCCCCCCEEEECCCCCC T ss_conf 99998626766887998999986 No 176 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Probab=90.68 E-value=0.16 Score=28.05 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=33.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH Q ss_conf 0311766540468999999999853100533322550466667889999999898 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674) ..|+|-.||||.+.+...+.. + ...++|.|+++..-++|+-|.-- T Consensus 48 ~~vLDiGCG~G~~~i~la~~~----~------~~~v~GiDis~~~i~~A~~n~~~ 92 (292) T 3g07_A 48 RDVLDLGCNVGHLTLSIACKW----G------PSRMVGLDIDSRLIHSARQNIRH 92 (292) T ss_dssp SEEEEESCTTCHHHHHHHHHT----C------CSEEEEEESCHHHHHHHHHTC-- T ss_pred CEEEEEECCCCHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHHH T ss_conf 959998579789999999878----9------98899970988999999999998 No 177 >3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A Probab=90.47 E-value=0.65 Score=24.01 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=41.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .+|.|-.||||.+-..|.+ .+ ...+|+.|.++. ..+|+....-.|.... -.+..|+.- +. T Consensus 48 ~~VLDiGcG~G~ls~~aa~--------~G---a~~V~~~e~s~~-~~~~~~~~~~n~~~~~------I~~i~~~~~--~l 107 (341) T 3b3f_A 48 KIVLDVGCGSGILSFFAAQ--------AG---ARKIYAVEASTM-AQHAEVLVKSNNLTDR------IVVIPGKVE--EV 107 (341) T ss_dssp CEEEEESCTTSHHHHHHHH--------TT---CSEEEEEECSTH-HHHHHHHHHHTTCTTT------EEEEESCTT--TC T ss_pred CEEEEECCCCCHHHHHHHH--------CC---CCEEEEEECCHH-HHHHHHHHHHCCCCCC------CEEEEEEHH--HC T ss_conf 9899966685399999997--------69---998999979099-9999999998599864------007960366--52 Q ss_pred CCCCEEEEEEECC Q ss_conf 8664189998168 Q gi|254780836|r 287 FTGKRFHYCLSNP 299 (674) Q Consensus 287 ~~~~kFD~vlaNP 299 (674) -...+||+|++.+ T Consensus 108 ~l~~~~Dvivse~ 120 (341) T 3b3f_A 108 SLPEQVDIIISEP 120 (341) T ss_dssp CCSSCEEEEECCC T ss_pred CCCCCCCEEEEEC T ss_conf 5676633798750 No 178 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Probab=89.88 E-value=0.33 Score=25.94 Aligned_cols=47 Identities=15% Similarity=-0.011 Sum_probs=33.7 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 403117665404689999999998531005333225504666678899999998980 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~ 262 (674) .+.|.|-.||||.++... .+..+ ...+.|.|++++..+.|+...--+ T Consensus 25 ~~~vLDvGcG~G~~~~~l----a~~~p------~~~vvGvD~s~~~l~~a~~~~~~~ 71 (225) T 3p2e_A 25 DRVHIDLGTGDGRNIYKL----AINDQ------NTFYIGIDPVKENLFDISKKIIKK 71 (225) T ss_dssp SEEEEEETCTTSHHHHHH----HHTCT------TEEEEEECSCCGGGHHHHHHHTSC T ss_pred CCEEEEEEEECCHHHHHH----HHHCC------CCEEEEEECCHHHHHHHHHHHHHH T ss_conf 998999227673999999----98689------978999867889999999888875 No 179 >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus} Probab=89.77 E-value=0.75 Score=23.60 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=41.7 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCC Q ss_conf 0311766540468999999999853100533322550466667889999999898088753345666682--34754579 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSK 284 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~~ 284 (674) ..|.|-.||||-+-.-|.+ ++. ..+|+.|.++ ....|+...--.|+. .+| ..|+.- T Consensus 160 kvVLDvGcGtGiLs~~AA~--------aGA---~kV~avE~S~-~a~~A~~~v~~Ngl~--------d~I~vi~g~~e-- 217 (480) T 3b3j_A 160 KIVLDVGCGSGILSFFAAQ--------AGA---RKIYAVEAST-MAQHAEVLVKSNNLT--------DRIVVIPGKVE-- 217 (480) T ss_dssp CEEEEESCSTTHHHHHHHH--------TTC---SEEEEEECHH-HHHHHHHHHHHTTCT--------TTEEEEESCTT-- T ss_pred CEEEEECCCCCHHHHHHHH--------CCC---CEEEEECCHH-HHHHHHHHHHHCCCC--------CCEEEEECCHH-- T ss_conf 9899968883699999998--------599---8899990959-999999999974998--------61689975276-- Q ss_pred CCCCCCEEEEEEECCC Q ss_conf 9986641899981685 Q gi|254780836|r 285 DLFTGKRFHYCLSNPP 300 (674) Q Consensus 285 d~~~~~kFD~vlaNPP 300 (674) +--..++||+|++.+- T Consensus 218 ~l~lpe~vDvIVSE~m 233 (480) T 3b3j_A 218 EVSLPEQVDIIISEPM 233 (480) T ss_dssp TCCCSSCEEEEECCCC T ss_pred HCCCCCCCCEEEEECC T ss_conf 5676766678999832 No 180 >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Probab=89.04 E-value=1 Score=22.78 Aligned_cols=136 Identities=21% Similarity=0.186 Sum_probs=72.5 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH--HHHHHHHHCCCCCCCCCCCCCC--CCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999--9999898088753345666682--3475457 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV--CVAGMLIRRLESDPRRDLSKNI--QQGSTLS 283 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI--ak~nMli~g~~~d~~~~~~~NI--~~GdTL~ 283 (674) .|.|--||+|.+|+..+ .. .....+.|.|+.+..... .++..+-+... .+..|| ..||... T Consensus 49 ~iLeIGcG~G~~l~~lA----~~------~P~~~~iGiei~~~~~~~~~~~~~~~~~~~~-----~~l~Nv~~~~~da~~ 113 (235) T 3ckk_A 49 EFADIGCGYGGLLVELS----PL------FPDTLILGLEIRVKVSDYVQDRIRALRAAPA-----GGFQNIACLRSNAMK 113 (235) T ss_dssp EEEEETCTTCHHHHHHG----GG------STTSEEEEEESCHHHHHHHHHHHHHHHHSTT-----CCCTTEEEEECCTTT T ss_pred EEEEEECCCCHHHHHHH----HH------CCCCCEEEEEECHHHHHHHHHHHHHHHHHHH-----CCCCEEEEEECCHHH T ss_conf 79998226869999999----86------8687289886135899999989999999987-----088569998544487 Q ss_pred --CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf --999866418999816856765310001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 284 --KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 284 --~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .+.++...||.|..|-|= +|-+.. .++. |.- +--|+..+...|++ ||++-+..+ T Consensus 114 ~l~~~~~~~s~d~v~i~fPD--PWpK~~-----h~kr----Rl~---------~~~fl~~~~r~Lkp----gG~l~i~TD 169 (235) T 3ckk_A 114 HLPNFFYKGQLTKMFFLFPD--PHFKRT-----KHKW----RII---------SPTLLAEYAYVLRV----GGLVYTITD 169 (235) T ss_dssp CHHHHCCTTCEEEEEEESCC----------------------CC---------CHHHHHHHHHHEEE----EEEEEEEES T ss_pred HHHHHHCCCCCHHCEEECCC--CCCCHH-----HHHH----HHC---------CHHHHHHHHHHCCC----CCEEEEEEC T ss_conf 76665135540010576689--873133-----3214----321---------57799999985688----988999989 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 97134776443268999999884946888 Q gi|254780836|r 362 SSPLFNGRAGSGESEIRRWLLENDLIEAI 390 (674) Q Consensus 362 gs~LF~G~agsGEs~IRk~lie~d~ieaI 390 (674) ...+| ..+...+-+....+.+ T Consensus 170 ~~~y~--------~~~~~~~~~~~~f~~~ 190 (235) T 3ckk_A 170 VLELH--------DWMCTHFEEHPLFERV 190 (235) T ss_dssp CHHHH--------HHHHHHHHTSTTEEEE T ss_pred CHHHH--------HHHHHHHHHCCCEECC T ss_conf 98999--------9999999859361125 No 181 >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Probab=88.60 E-value=1.1 Score=22.46 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=77.1 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++.... +.+++ +...|+++ |.....++.+.--.|.... -.+..+|-+. + T Consensus 183 ~~~vlDvG~G~G~~~~~l~----~~~P~------~~~~~~D~-~~~~~~a~~~~~~~~~~~~------i~~~~~d~~~-~ 244 (374) T 1qzz_A 183 VRHVLDVGGGNGGMLAAIA----LRAPH------LRGTLVEL-AGPAERARRRFADAGLADR------VTVAEGDFFK-P 244 (374) T ss_dssp CCEEEEETCTTSHHHHHHH----HHCTT------CEEEEEEC-HHHHHHHHHHHHHTTCTTT------EEEEECCTTS-C T ss_pred CCEEEEECCCCCHHHHHHH----HHCCC------EEEEEEEC-HHHHHHHHHHHHHCCCCCE------EEEEECHHHH-C T ss_conf 8789997998878899999----97897------28999607-8889999999885588622------7887041443-1 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---- Q ss_conf 9866418999816856765310001112344226666535777747706599999999961466578807999738---- Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---- 361 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---- 361 (674) . + ..||+|+.+=-+- .|..+. -..+|+++...|+| |||+.|+-. T Consensus 245 ~-p-~~~D~v~~~~vlh-~~~d~~-------------------------~~~iL~~~~~~L~p----gG~lli~d~~~~~ 292 (374) T 1qzz_A 245 L-P-VTADVVLLSFVLL-NWSDED-------------------------ALTILRGCVRALEP----GGRLLVLDRADVE 292 (374) T ss_dssp C-S-CCEEEEEEESCGG-GSCHHH-------------------------HHHHHHHHHHHEEE----EEEEEEEECCH-- T ss_pred C-C-CCCCEEEEEEEEE-CCCHHH-------------------------HHHHHHHHHHHCCC----CCEEEEEEECCCC T ss_conf 8-9-8774899842242-389899-------------------------99999999986298----9889999802479 Q ss_pred --CC-CC-----------CCCCCCCCHHHHHHHHHHCCC-EEEEEECCCC Q ss_conf --97-13-----------477644326899999988494-6888317677 Q gi|254780836|r 362 --SS-PL-----------FNGRAGSGESEIRRWLLENDL-IEAIVALPTD 396 (674) Q Consensus 362 --gs-~L-----------F~G~agsGEs~IRk~lie~d~-ieaII~LP~~ 396 (674) +. +. ++|+.--.+.+.|+++-+-++ +..+...|.. T Consensus 293 ~~~~~~~~~~~~dl~m~~~~~G~~rt~~e~~~ll~~AGf~~~~~~~~~~~ 342 (374) T 1qzz_A 293 GDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGST 342 (374) T ss_dssp -----HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCS T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 98732678999889999857991689999999999869967699967987 No 182 >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Probab=88.53 E-value=1.1 Score=22.43 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=53.6 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674) ..++..|+|--||.||+...+.+. .+ ..+-|..+++.-.+.|+.-..-.|... ...+..+|- T Consensus 62 l~~G~~VLDiGCG~G~~a~~~A~~-------~g----~~v~git~s~~q~~~a~~~~~~~~~~~------~~~~~~~d~- 123 (287) T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEK-------YD----VNVVGLTLSKNQANHVQQLVANSENLR------SKRVLLAGW- 123 (287) T ss_dssp CCTTCEEEEETCTTSHHHHHHHHH-------HC----CEEEEEESCHHHHHHHHHHHHTCCCCS------CEEEEESCG- T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-------CC----CCEEEEECCHHHHHHHHHHHHHHCCCC------HHHHHHHHH- T ss_conf 999998999688525999999996-------79----846999689999999999987614540------157887436- Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE Q ss_conf 7999866418999816856765310001112344226666535777747706599999999961466578807999 Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 (674) Q Consensus 283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI 358 (674) .....+||.|+|-=-| || +|.... -.|++.+-.-|+| |||++| T Consensus 124 ---~~~~~~fD~i~si~~~-------------eh-----------~~~~~~--~~~~~~~~r~Lkp----gG~~~i 166 (287) T 1kpg_A 124 ---EQFDEPVDRIVSIGAF-------------EH-----------FGHERY--DAFFSLAHRLLPA----DGVMLL 166 (287) T ss_dssp ---GGCCCCCSEEEEESCG-------------GG-----------TCTTTH--HHHHHHHHHHSCT----TCEEEE T ss_pred ---HHCCCCCCCEEEEHHH-------------HH-----------CCHHHH--HHHHHHHHHHCCC----CCEEEE T ss_conf ---6413776405553227-------------75-----------074779--9999999974699----972999 No 183 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} Probab=87.52 E-value=1.3 Score=22.02 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=72.3 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++....+ .+++ ++..+.++ |+....|+.+.--.|.... -....||-+. + T Consensus 168 ~~~vlDvG~G~G~~~~~l~~----~~P~------l~~~~~Dl-p~~~~~a~~~~~~~~~~~r------i~~~~gd~~~-~ 229 (334) T 2ip2_A 168 GRSFVDVGGGSGELTKAILQ----AEPS------ARGVMLDR-EGSLGVARDNLSSLLAGER------VSLVGGDMLQ-E 229 (334) T ss_dssp TCEEEEETCTTCHHHHHHHH----HCTT------CEEEEEEC-TTCTHHHHHHTHHHHHTTS------EEEEESCTTT-C T ss_pred CCEEEECCCCCCHHHHHHHH----HCCC------EEEEEECC-CCHHHHHHHHHHHCCCCCE------EEEECCCHHH-C T ss_conf 88673038987688888898----6996------49998228-5112899876765077770------6997177654-3 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---C Q ss_conf 9866418999816856765310001112344226666535777747706599999999961466578807999738---9 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---S 362 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---g 362 (674) . + ..||+|+..-=+- +|..++. ...|+++-..|+| ||++.|+-. . T Consensus 230 ~-p-~~~D~v~~~~vlh-~~~d~~~-------------------------~~iL~~~~~aL~p----gG~lli~e~~~~~ 277 (334) T 2ip2_A 230 V-P-SNGDIYLLSRIIG-DLDEAAS-------------------------LRLLGNCREAMAG----DGRVVVIERTISA 277 (334) T ss_dssp C-C-SSCSEEEEESCGG-GCCHHHH-------------------------HHHHHHHHHHSCT----TCEEEEEECCBCS T ss_pred C-C-CCCCEEEEEEEEC-CCCHHHH-------------------------HHHHHHHHHHHCC----CCEEEEEEEECCC T ss_conf 8-8-7570899962111-5897899-------------------------9999999986089----9789999850489 Q ss_pred ---CC---CC-------CCCCCCCHHHHHHHHHHCCC-EEEEEECCC Q ss_conf ---71---34-------77644326899999988494-688831767 Q gi|254780836|r 363 ---SP---LF-------NGRAGSGESEIRRWLLENDL-IEAIVALPT 395 (674) Q Consensus 363 ---s~---LF-------~G~agsGEs~IRk~lie~d~-ieaII~LP~ 395 (674) ++ +| .|+.--.+.++++++-+.++ +.-|+.+|. T Consensus 278 ~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~AGf~~~~~~~~p~ 324 (334) T 2ip2_A 278 SEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPM 324 (334) T ss_dssp SSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEETT T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCC T ss_conf 99864889999999985799789999999999986993679998599 No 184 >2pbf_A Protein-L-isoaspartate O-methyltransferase beta- aspartate methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum 3D7} Probab=87.44 E-value=1.3 Score=22.00 Aligned_cols=109 Identities=13% Similarity=-0.008 Sum_probs=57.8 Q ss_pred CCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH Q ss_conf 75368-17999999997317840110138776403117665404689999999998531005333225504666678899 Q gi|254780836|r 175 EDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674) Q Consensus 175 GeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674) |++-. |.-+.+++-.|+ . .+ .| ..+|+|--||||= ++...-.+.. .-......++|.|++++.+. T Consensus 58 ~~tis~P~~~A~~l~~L~-~----~l--~~--g~~VLeIGtGsGY-~ta~la~~~~----~l~~~~g~V~~iE~~~~l~~ 123 (227) T 2pbf_A 58 GVTISAPHMHALSLKRLI-N----VL--KP--GSRAIDVGSGSGY-LTVCMAIKMN----VLENKNSYVIGLERVKDLVN 123 (227) T ss_dssp TEEECCHHHHHHHHHHHT-T----TS--CT--TCEEEEESCTTSH-HHHHHHHHTT----TTTCTTCEEEEEESCHHHHH T ss_pred CCEECHHHHHHHHHHHHH-H----HC--CC--CCEEEEECCCCCH-HHHHHHHHHH----HHCCCCCEEEEEEECHHHHH T ss_conf 978557899999999878-6----47--99--8869983799739-9999999976----52245653899970599999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--C-CCCEEEEEEECC Q ss_conf 999998980887533456666823475457999--8-664189998168 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--F-TGKRFHYCLSNP 299 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~--~-~~~kFD~vlaNP 299 (674) .|+-|+--.+... .....-.+..||.+.-.. . ....||.|+..- T Consensus 124 ~a~~~l~~~~~~~--~~~~nv~~~~gd~~~~~~~g~~~~~pfD~I~v~~ 170 (227) T 2pbf_A 124 FSLENIKRDKPEL--LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGA 170 (227) T ss_dssp HHHHHHHHHCGGG--GSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECS T ss_pred HHHHHHHHCCHHH--HCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 9999998510444--1557589997773201255787678824799940 No 185 >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Probab=87.34 E-value=1.3 Score=21.96 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=30.4 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH Q ss_conf 403117665404689999999998531005333225504666678899999998 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674) ..+|.|..||+|.+.....+ .. ..+.|.|+++..-++|+.+. T Consensus 57 ~~~vLDvGCG~G~~~~~la~----~g--------~~v~gvD~s~~~i~~Ar~~~ 98 (245) T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQ----FF--------PRVIGLDVSKSALEIAAKEN 98 (245) T ss_dssp TSCEEEETCTTSHHHHHHHH----HS--------SCEEEEESCHHHHHHHHHHS T ss_pred CCEEEEECCCCCHHHHHHHC----CC--------CEEEEEECCHHHHHHHHHHC T ss_conf 98589975879787999763----78--------45998509999999999867 No 186 >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Probab=83.23 E-value=2.1 Score=20.71 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=63.7 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC- Q ss_conf 4031176654046899999999985310053332255046666788999999989808875334566668234754579- Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK- 284 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~- 284 (674) ...|.+--||+|.+.- ++....+. ..+-+.|+++....+|+..+-+.. +..-.|..||-..- T Consensus 90 p~rvL~lG~G~g~l~r----~l~~~~P~------~~v~~VEidp~vi~~ar~~f~~~~-------~~rv~v~~~Da~~~l 152 (317) T 3gjy_A 90 KLRITHLGGGACTMAR----YFADVYPQ------SRNTVVELDAELARLSREWFDIPR-------APRVKIRVDDARMVA 152 (317) T ss_dssp GCEEEEESCGGGHHHH----HHHHHSTT------CEEEEEESCHHHHHHHHHHSCCCC-------TTTEEEEESCHHHHH T ss_pred CCEEEEECCCHHHHHH----HHHHHCCC------CEEEEEECCHHHHHHHHHHCCCCC-------CCCEEEEECCHHHHH T ss_conf 8779998996899999----99997899------869999798899999998679988-------997689978499999 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE Q ss_conf 99866418999816856765310001112344226666535777747706599999999961466578807999 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI 358 (674) ......+||+|+.+..-+.. .|.. -..--|++.+-..|++ ||++++ T Consensus 153 ~~~~~~~~D~Iv~D~f~~~~-----------------------~p~~-l~t~ef~~~~~~~L~p----gG~lvv 198 (317) T 3gjy_A 153 ESFTPASRDVIIRDVFAGAI-----------------------TPQN-FTTVEFFEHCHRGLAP----GGLYVA 198 (317) T ss_dssp HTCCTTCEEEEEECCSTTSC-----------------------CCGG-GSBHHHHHHHHHHEEE----EEEEEE T ss_pred HHCCCCCCCEEEEECCCCCC-----------------------CCCC-CCCHHHHHHHHHHCCC----CCEEEE T ss_conf 75055788779995788766-----------------------7632-1679999999974189----838999 No 187 >1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52 Probab=81.98 E-value=2.3 Score=20.41 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=65.6 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCC--CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH Q ss_conf 6575368179999999973178401101--38776403117665404689999999998531005333225504666678 Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFK--ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 (674) Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~--~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ 250 (674) ..|+|||-.+|..+..++|..-...... ..|.. .+|...-+|+|.|.....+.++.. +. ....+.+|-.|.++. T Consensus 47 ~~GDF~TSpeis~~FG~~ia~~~~~~~~~~~~p~~-~~ivE~GaG~G~L~~DIl~~~~~~-p~--~~~~~~~~~vE~s~~ 122 (387) T 1zkd_A 47 REGDFTTSPEISQMFGELLGLWSASVWKAADEPQT-LRLIEIGPGRGTMMADALRALRVL-PI--LYQSLSVHLVEINPV 122 (387) T ss_dssp ----CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS-EEEEEECCTTSHHHHHHHHHHTTS-HH--HHTTEEEEEECCCHH T ss_pred CCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHHC-HH--HHHCCEEEEEECCHH T ss_conf 99874687405799999999999999997599977-169996798207899899998648-15--441345899936878 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 899999998980887533456666823475457999866418999816856 Q gi|254780836|r 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674) .-+.-+.. +.+ ..+|.+-++|.+-. . ..-+|+||-=| T Consensus 123 Lr~~Q~~~--L~~---------~~~i~~~~~l~~~~--~-~~giiiANE~f 159 (387) T 1zkd_A 123 LRQKQQTL--LAG---------IRNIHWHDSFEDVP--E-GPAVILANEYF 159 (387) T ss_dssp HHHHHHHH--STT---------CSSEEEESSGGGSC--C-SSEEEEEESSG T ss_pred HHHHHHHH--HCC---------CCCEEEECCHHHCC--C-CCCEEEECCCC T ss_conf 88999987--247---------77404741421177--8-88147612235 No 188 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Probab=79.06 E-value=2.9 Score=19.79 Aligned_cols=132 Identities=15% Similarity=0.203 Sum_probs=70.3 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++.... +..++ ++..++++ |+....++.+.--+|.... -....||-+. + T Consensus 170 ~~~vlDvGgG~G~~~~~l~----~~~P~------~~~~~~Dl-p~~~~~a~~~~~~~~~~~r------i~~~~~d~~~-~ 231 (332) T 3i53_A 170 LGHVVDVGGGSGGLLSALL----TAHED------LSGTVLDL-QGPASAAHRRFLDTGLSGR------AQVVVGSFFD-P 231 (332) T ss_dssp GSEEEEETCTTSHHHHHHH----HHCTT------CEEEEEEC-HHHHHHHHHHHHHTTCTTT------EEEEECCTTS-C T ss_pred CCEEEECCCCCCHHHHHHH----HHCCC------CEEEEEEC-HHHHHHHHHHHHHCCCCCC------EEEECCCCCC-C T ss_conf 7478752899769999999----97899------86999978-4389999987564167874------5773375123-5 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---C Q ss_conf 9866418999816856765310001112344226666535777747706599999999961466578807999738---9 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---S 362 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---g 362 (674) . + ..+|.++..=-+- +|..+ .....|+++...|+| |||+.|+-+ . T Consensus 232 ~-p-~~~D~~~~~~vlh-~~~d~-------------------------~~~~iL~~~~~~L~p----gG~lli~d~~~~~ 279 (332) T 3i53_A 232 L-P-AGAGGYVLSAVLH-DWDDL-------------------------SAVAILRRCAEAAGS----GGVVLVIEAVAGD 279 (332) T ss_dssp C-C-CSCSEEEEESCGG-GSCHH-------------------------HHHHHHHHHHHHHTT----TCEEEEEECCCC- T ss_pred C-C-CCCCEEEEECCCC-CCCHH-------------------------HHHHHHHHHHHHCCC----CCEEEEEECCCCC T ss_conf 8-9-9873899721456-78989-------------------------999999999997599----9889999616799 Q ss_pred ---CCC-------CCCCCCCCHHHHHHHHHHCCCE Q ss_conf ---713-------4776443268999999884946 Q gi|254780836|r 363 ---SPL-------FNGRAGSGESEIRRWLLENDLI 387 (674) Q Consensus 363 ---s~L-------F~G~agsGEs~IRk~lie~d~i 387 (674) ++. ..|+.--.+.++++++-+-++- T Consensus 280 ~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~aGf~ 314 (332) T 3i53_A 280 EHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLA 314 (332) T ss_dssp --CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEE T ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCE T ss_conf 86420445999986599378999999999987996 No 189 >2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A* Probab=77.00 E-value=3.3 Score=19.40 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=71.0 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) +|+=---|.||.+-+. .... ...++-..|++++...+|+--+-.-. ....+..-++..+|-..-=.- T Consensus 119 ~VLIiGgGdG~~~rel-------lk~~---~~~~v~~VEID~~Vv~~ak~~f~~~~---~~~~dprv~v~~~Da~~~l~~ 185 (321) T 2pt6_A 119 NVLVVGGGDGGIIREL-------CKYK---SVENIDICEIDETVIEVSKIYFKNIS---CGYEDKRVNVFIEDASKFLEN 185 (321) T ss_dssp EEEEEECTTCHHHHHH-------TTCT---TCCEEEEEESCHHHHHHHHHHCTTTS---GGGGSTTEEEEESCHHHHHHH T ss_pred EEEEECCCCHHHHHHH-------HHCC---CCCCEEEECCCHHHHHHHHHHHHHHC---CCCCCCCEEEEECHHHHHHHH T ss_conf 6999848953999999-------9729---96414785257999999998626623---443687626996169999873 Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC Q ss_conf 66418999816856765310001112344226666535777747706599999999961466578807999738971347 Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 (674) Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~ 367 (674) ...+||+|+..++-.. .... . .. +--|.+.+-..|++. |.+ ++-.+|+.+. T Consensus 186 ~~~~yDvIi~D~~dp~--~~~~--------~-L~-------------t~eFy~~~~~~L~~~----Gi~-v~q~~s~~~~ 236 (321) T 2pt6_A 186 VTNTYDVIIVDSSDPI--GPAE--------T-LF-------------NQNFYEKIYNALKPN----GYC-VAQCESLWIH 236 (321) T ss_dssp CCSCEEEEEEECCCSS--SGGG--------G-GS-------------SHHHHHHHHHHEEEE----EEE-EEEECCTTTC T ss_pred CCCCCCEEEEECCCCC--CCHH--------H-HC-------------CHHHHHHHHHHCCCC----CEE-EEECCCHHHC T ss_conf 6676677999379988--7346--------6-54-------------699999999974899----499-9916871206 Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE Q ss_conf 764432689999998849468883176776557886169 Q gi|254780836|r 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 (674) Q Consensus 368 G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~ 406 (674) -.. -..+.+.+-+. -|.-.+|.+.|||| T Consensus 237 ~~~---~~~i~~~l~~v--------F~~v~~y~~~iPty 264 (321) T 2pt6_A 237 VGT---IKNMIGYAKKL--------FKKVEYANISIPTY 264 (321) T ss_dssp HHH---HHHHHHHHHTT--------CSEEEEEEEECTTS T ss_pred HHH---HHHHHHHHHHH--------CCCEEEEEEEECCC T ss_conf 888---77667788742--------89646898880464 No 190 >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Probab=76.65 E-value=3.3 Score=19.44 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=45.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) +.|+=-.-|.||.+-+. .+... ..++-..|++++...+|+.-+-. . .....+..-+|..+|-..-=. T Consensus 110 k~VLIiGgGdG~~~rel-------lk~~~---v~~v~~VEID~~Vi~~a~~~~~~--~-~~~~~dprv~i~~~Da~~~l~ 176 (314) T 2b2c_A 110 KRVLIIGGGDGGILREV-------LKHES---VEKVTMCEIDEMVIDVAKKFLPG--M-SCGFSHPKLDLFCGDGFEFLK 176 (314) T ss_dssp CEEEEESCTTSHHHHHH-------TTCTT---CCEEEEECSCHHHHHHHHHHCTT--T-SGGGGCTTEEEECSCHHHHHH T ss_pred CEEEEECCCCHHHHHHH-------HHCCC---CCEEEEEEECHHHHHHHHHHCHH--H-CCCCCCCCEEEEECHHHHHHH T ss_conf 87999889846999999-------97499---54589996088999999763633--2-254566652799710899974 Q ss_pred CCCCEEEEEEECCCC Q ss_conf 866418999816856 Q gi|254780836|r 287 FTGKRFHYCLSNPPF 301 (674) Q Consensus 287 ~~~~kFD~vlaNPPF 301 (674) ....+||+|+..++- T Consensus 177 ~~~~~yDvII~D~~d 191 (314) T 2b2c_A 177 NHKNEFDVIITDSSD 191 (314) T ss_dssp HCTTCEEEEEECCC- T ss_pred CCCCCCCEEEEECCC T ss_conf 178888889996899 No 191 >3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A Probab=75.19 E-value=3.7 Score=19.09 Aligned_cols=119 Identities=12% Similarity=0.024 Sum_probs=64.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 031176654046899999999985310053332255046666788999999989-8088753345666682347545799 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ++|+=---|.||.+-+..+| .. ...+-..|+++....+|+.-+- +.+. ...+..-+|..+|...-= T Consensus 85 ~~VLiiGgG~G~~~~e~lk~-------~~---v~~v~~VEiD~~Vi~~a~~~~~~~~~~---~~~dprv~i~~~Da~~~l 151 (294) T 3adn_A 85 KHVLIIGGGDGAMLREVTRH-------KN---VESITMVEIDAGVVSFCRQYLPNHNAG---SYDDPRFKLVIDDGVNFV 151 (294) T ss_dssp CEEEEESCTTCHHHHHHHTC-------TT---CCEEEEECSCTTHHHHHHHHCHHHHSS---CTTCTTCCEECSCSCC-- T ss_pred CEEEEECCCCHHHHHHHHHH-------CC---CCEEEEECCCHHHHHHHHHCCCCCCCC---CCCCCCEEEEECHHHHHH T ss_conf 66999889837999999981-------99---663899717899999987448411355---467885799951689998 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC Q ss_conf 98664189998168567653100011123442266665357777477065999999999614665788079997389713 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674) .-..++||+|+..++-. +.. +.+=-+--|.+.+-..|++. |.+ ++-.+|+. T Consensus 152 ~~~~~~yDvIi~D~~dp--~~~----------------------~~~L~t~eFy~~~~~~L~p~----Gv~-v~q~~s~~ 202 (294) T 3adn_A 152 NQTSQTFDVIISDCTDP--IGP----------------------GESLFTSAFYEGCKRCLNPG----GIF-VAQNGVCF 202 (294) T ss_dssp -CCCCCEEEEEECC----------------------------------CCHHHHHHHHHTEEEE----EEE-EEEEEECS T ss_pred HHCCCCCCEEEEECCCC--CCC----------------------CHHHCCHHHHHHHHHHHCCC----CEE-EEECCCCC T ss_conf 51688777899808877--887----------------------74656899999999873899----589-99268700 Q ss_pred CC Q ss_conf 47 Q gi|254780836|r 366 FN 367 (674) Q Consensus 366 F~ 367 (674) +. T Consensus 203 ~~ 204 (294) T 3adn_A 203 LQ 204 (294) T ss_dssp SC T ss_pred CC T ss_conf 16 No 192 >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Probab=74.58 E-value=3.8 Score=18.99 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=83.3 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++.... +.+++ +..-++++ |.+...++.+.--.|+... -....||-+. + T Consensus 184 ~~~vlDvGgG~G~~~~~l~----~~~p~------~~~~~~D~-p~~~~~a~~~~~~~~l~~r------i~~~~~d~~~-~ 245 (360) T 1tw3_A 184 VRHVLDVGGGKGGFAAAIA----RRAPH------VSATVLEM-AGTVDTARSYLKDEGLSDR------VDVVEGDFFE-P 245 (360) T ss_dssp CSEEEEETCTTSHHHHHHH----HHCTT------CEEEEEEC-TTHHHHHHHHHHHTTCTTT------EEEEECCTTS-C T ss_pred CCEEEECCCCCCHHHHHHH----HHCCC------EEEEEEEC-HHHHHHHHHHHHHCCCCCC------CEEECCCHHH-C T ss_conf 7579863899868899999----75894------48999888-4147999999986288743------4351376754-2 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---- Q ss_conf 9866418999816856765310001112344226666535777747706599999999961466578807999738---- Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---- 361 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---- 361 (674) . + ..+|+++..=-+- +|..+. ...+|+++...|+| |||+.|+-. T Consensus 246 ~-p-~~~D~v~~~~vlh-~~~d~~-------------------------~~~iL~~~~~aL~p----gg~lli~e~~~~~ 293 (360) T 1tw3_A 246 L-P-RKADAIILSFVLL-NWPDHD-------------------------AVRILTRCAEALEP----GGRILIHERDDLH 293 (360) T ss_dssp C-S-SCEEEEEEESCGG-GSCHHH-------------------------HHHHHHHHHHTEEE----EEEEEEEECCBCG T ss_pred C-C-CCCCEEEEEEEEE-CCCHHH-------------------------HHHHHHHHHHHHCC----CCEEEEEECCCCC T ss_conf 7-8-7674898734775-398799-------------------------99999999997199----8389999724689 Q ss_pred -CC-C-----------CCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEEEEE Q ss_conf -97-1-----------3477644326899999988494-688831767765578861699999 Q gi|254780836|r 362 -SS-P-----------LFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWIL 410 (674) Q Consensus 362 -gs-~-----------LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~Iwil 410 (674) ++ + .+.|+.--.+++.++++-+-++ +.-|..+|.... .....|+++ T Consensus 294 ~~~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~i~~~p~~~~---~~~~~li~~ 353 (360) T 1tw3_A 294 ENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTI---PYDLSLLVL 353 (360) T ss_dssp GGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSS---SCEEEEEEE T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC---CCCEEEEEE T ss_conf 986005788622888975799689999999999987997889998999987---736489999 No 193 >1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 Probab=74.19 E-value=3.9 Score=18.93 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=57.4 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999 Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674) Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674) |-+-..|++-||+.+- +.....|..--||+|.+ |.+ +.+ . ...++..|+++.....-+ T Consensus 3 FL~d~~i~~~iv~~~~----------~~~~d~vlEIGpG~G~L-T~~---Ll~---~-----~~~v~avE~D~~l~~~L~ 60 (252) T 1qyr_A 3 FLNDQFVIDSIVSAIN----------PQKGQAMVEIGPGLAAL-TEP---VGE---R-----LDQLTVIELDRDLAARLQ 60 (252) T ss_dssp EECCHHHHHHHHHHHC----------CCTTCCEEEECCTTTTT-HHH---HHT---T-----CSCEEEECCCHHHHHHHH T ss_pred CCCCHHHHHHHHHHCC----------CCCCCEEEEECCCCCHH-HHH---HHH---C-----CCCEEEEEECCHHHHHHH T ss_conf 5278899999998448----------99979699989987299-999---981---6-----897699996212889999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCEEEEEEECCCCCCC Q ss_conf 99898088753345666682347545799986-----6418999816856765 Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFHYCLSNPPFGKK 304 (674) Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~-----~~kFD~vlaNPPFg~~ 304 (674) ... . ....-.|..||-|.-|.-. +.. -.|++|-||+.+ T Consensus 61 ~~~-~--------~~~~~~ii~~D~l~~~~~~~~~~~~~~-~~vvgNLPY~Is 103 (252) T 1qyr_A 61 THP-F--------LGPKLTIYQQDAMTFNFGELAEKMGQP-LRVFGNLPYNIS 103 (252) T ss_dssp TCT-T--------TGGGEEEECSCGGGCCHHHHHHHHTSC-EEEEEECCTTTH T ss_pred HHH-H--------CCCCEEEEECHHHHHCHHHHHCCCCCC-EEEEECCHHHHH T ss_conf 876-3--------177625650114552321221036897-599946628899 No 194 >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Probab=74.18 E-value=3.5 Score=19.28 Aligned_cols=119 Identities=12% Similarity=0.020 Sum_probs=61.9 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) +|+=---|+||.+-+. .+.. ...++-..|+++....+|+.-+-..+ ....+..-+|..+|...-=.. T Consensus 93 ~VLiiGgG~G~~~~e~-------l~~~---~~~~v~~VEID~~Vi~~a~~~~~~~~---~~~~d~rv~ii~~Da~~~l~~ 159 (296) T 1inl_A 93 KVLIIGGGDGGTLREV-------LKHD---SVEKAILCEVDGLVIEAARKYLKQTS---CGFDDPRAEIVIANGAEYVRK 159 (296) T ss_dssp EEEEEECTTCHHHHHH-------TTST---TCSEEEEEESCHHHHHHHHHHCHHHH---GGGGCTTEEEEESCHHHHGGG T ss_pred EEEEECCCCHHHHHHH-------HHCC---CCCCEEEECCCHHHHHHHHHHHHHHC---CCCCCCCCEEEEHHHHHHHHH T ss_conf 7999879827999999-------9649---97717886357899999998767622---433699608996148999974 Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC Q ss_conf 66418999816856765310001112344226666535777747706599999999961466578807999738971347 Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 (674) Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~ 367 (674) ...+||+|+..++-... . ...+. -+--|.+.+-..|++. |. .++-.+|+.+. T Consensus 160 ~~~~yDvIi~D~~dp~~--~------------~~~~L---------~t~eFy~~~~~~L~~~----Gi-~v~q~~s~~~~ 211 (296) T 1inl_A 160 FKNEFDVIIIDSTDPTA--G------------QGGHL---------FTEEFYQACYDALKED----GV-FSAETEDPFYD 211 (296) T ss_dssp CSSCEEEEEEEC------------------------C---------CSHHHHHHHHHHEEEE----EE-EEEECCCTTTT T ss_pred CCCCCCEEEEECCCCCC--C------------CCCCC---------CCHHHHHHHHHHHCCC----CE-EEECCCCCCCC T ss_conf 78877689990898654--4------------20111---------6799999999860899----69-99867881007 No 195 >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca} Probab=73.88 E-value=2.7 Score=20.03 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=53.8 Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989 Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674) Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674) .+..+++..|+- . . .| .+|.+-.||+|-.-.. +.. .. ....++++.|.+++..++|+.|+- T Consensus 42 ~~~g~~L~~L~~-----~-~-~~---~~ILEiGtg~G~st~~----la~---~~--~~~g~v~~id~~~~~~~~ar~~~~ 102 (210) T 3c3p_A 42 RQTGRLLYLLAR-----I-K-QP---QLVVVPGDGLGCASWW----FAR---AI--SISSRVVMIDPDRDNVEHARRMLH 102 (210) T ss_dssp HHHHHHHHHHHH-----H-H-CC---SEEEEESCGGGHHHHH----HHT---TS--CTTCEEEEEESCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH-----H-H-CC---CEEEEEECCCHHHHHH----HHH---HC--CCCEEEEEEECCCCHHHHHHHHHH T ss_conf 899999999988-----5-6-80---9899950814399999----999---75--568199999775103789998798 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC Q ss_conf 80887533456666823475457999866418999816 Q gi|254780836|r 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 (674) Q Consensus 261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN 298 (674) -.|.... -.+..||.+.-.. ....||+|+.. T Consensus 103 ~~g~~~~------i~~~~gda~~~~~-~~~~fDlifiD 133 (210) T 3c3p_A 103 DNGLIDR------VELQVGDPLGIAA-GQRDIDILFMD 133 (210) T ss_dssp HHSGGGG------EEEEESCHHHHHT-TCCSEEEEEEE T ss_pred HCCCCCE------EEEEECCHHHCCC-CCCCCCEEEEC T ss_conf 7298732------6786134543022-36886789985 No 196 >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Probab=73.86 E-value=4 Score=18.88 Aligned_cols=150 Identities=12% Similarity=0.069 Sum_probs=83.0 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC- Q ss_conf 4031176654046899999999985310053332255046666788999999989808875334566668234754579- Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK- 284 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~- 284 (674) .++|.+--+|+|---+... +.+.+ ..+++..|.+++...+|+-++--.|..... -.+..||.+.- T Consensus 57 ~~~vlEiGt~~G~stl~la---~al~~------~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~r-----v~~i~gda~e~L 122 (221) T 3dr5_A 57 STGAIAITPAAGLVGLYIL---NGLAD------NTTLTCIDPESEHQRQAKALFREAGYSPSR-----VRFLLSRPLDVM 122 (221) T ss_dssp CCEEEEESTTHHHHHHHHH---HHSCT------TSEEEEECSCHHHHHHHHHHHHHTTCCGGG-----EEEECSCHHHHG T ss_pred CCEEEEECCCHHHHHHHHH---HHCCC------CCEEEEEECCHHHHHHHHHHHHHCCCCCCE-----EEEECCCHHHHH T ss_conf 9989997280579999999---84799------978999989999999999999966887624-----677327789987 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC Q ss_conf 99866418999816856765310001112344226666535777747706599999999961466578807999738971 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674) Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674) +.+.+..||+|+....- .+ + .-++.+....|++ ||. ||.++ . T Consensus 123 ~~l~~~~fDlVfiD~~k-----~~-------y-------------------~~~~~~~~~lLkp----GGv--iv~Dn-v 164 (221) T 3dr5_A 123 SRLANDSYQLVFGQVSP-----MD-------L-------------------KALVDAAWPLLRR----GGA--LVLAD-A 164 (221) T ss_dssp GGSCTTCEEEEEECCCT-----TT-------H-------------------HHHHHHHHHHEEE----EEE--EEETT-T T ss_pred HHHCCCCCCEEEECCCH-----HH-------H-------------------HHHHHHHHHHCCC----CCE--EEEEC-C T ss_conf 87434787779975886-----77-------1-------------------8999998632558----838--99966-7 Q ss_pred CCCCCCC------CCHHHHHH---HHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 3477644------32689999---9988494688831767765578861699999468874 Q gi|254780836|r 365 LFNGRAG------SGESEIRR---WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 (674) Q Consensus 365 LF~G~ag------sGEs~IRk---~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~ 416 (674) |+.|.-. ..-..+|. +|-+..-+++++ ||- +.| |.|..|..+. T Consensus 165 l~~G~V~d~~~~d~~~~~~r~~~~~l~~~~~~~~~~-lPi----gdG----l~v~~K~~~~ 216 (221) T 3dr5_A 165 LLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVAR-LPL----GAG----LTVVTKALEH 216 (221) T ss_dssp TGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEE-ESS----TTC----EEEEEECCCC T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE-EEE----CCC----EEEEEECHHH T ss_conf 567855785447877899999999997399958999-870----881----1899980220 No 197 >2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=72.25 E-value=4.3 Score=18.64 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=46.1 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 82347545799986641899981685676531000111234422666653577774770659999999996146657880 Q gi|254780836|r 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 (674) Q Consensus 275 NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~gg 354 (674) ++...+.|..-.|.+..||+|++|--+. |- +.-+ ..++..+..-||| || T Consensus 50 ~v~~~~~l~~~~~~~~sfD~v~s~~~~~--~~----------------------~~~~---~~~l~e~~rvLKP----gG 98 (182) T 2yui_A 50 SVENIKQLLQSAHKESSFDIILSGLVPG--ST----------------------TLHS---AEILAEIARILRP----GG 98 (182) T ss_dssp EEEETTHHHHSCCCTTCBSEEEESCSSS--CC----------------------CCCC---HHHHHHHHHHBCT----TS T ss_pred EEEEHHHCCCCCCCCCCCCEEEECCEEC--CC----------------------CCCH---HHHHHHHHHHHCC----CE T ss_conf 9987000034787545763899823233--67----------------------6228---9999999997068----86 Q ss_pred EEEEECC--CCCCCCCCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 7999738--97134776443268999999884946888 Q gi|254780836|r 355 RAAIVLS--SSPLFNGRAGSGESEIRRWLLENDLIEAI 390 (674) Q Consensus 355 r~aIV~n--gs~LF~G~agsGEs~IRk~lie~d~ieaI 390 (674) |+.+.-+ .+.--.+.+.. ...+++.|...++++.- T Consensus 99 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~laGf~~v~ 135 (182) T 2yui_A 99 CLFLKEPVETAVDNNSKVKT-ASKLCSALTLSGLVEVK 135 (182) T ss_dssp CCEEEEEECCCCCSSCCSCC-HHHHHHHHHHHTCEEEE T ss_pred EEEEEECCCCCCCCCCCCCC-HHHHHHHHHHCCCCEEC T ss_conf 99998326555566520104-99999999876582132 No 198 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Probab=69.08 E-value=5.1 Score=18.19 Aligned_cols=101 Identities=12% Similarity=-0.022 Sum_probs=55.0 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||.|.||-... + .+ ...+|.|........|+.+ |.... +-.+....... T Consensus 108 ~~~ileIG~~dG~lL~~~~----~----~~----~~~~Gidps~~~~~~~~~~----~~~~~-------~~~~~~~~~~~ 164 (416) T 3ndi_A 108 DPFIVEIGCNDGIMLRTIQ----E----AG----VRHLGFEPSSGVAAKAREK----GIRVR-------TDFFEKATADD 164 (416) T ss_dssp SCEEEEETCTTTTTHHHHH----H----TT----CEEEEECSCHHHHHHHHHT----TCCEE-------CSCCSHHHHHH T ss_pred CCEEEEECCCCCHHHHHHH----H----CC----CCEEEECCCCCHHHHHCCC----CCCEE-------EECCHHHHHHH T ss_conf 8779983588870544334----2----03----5324422562034443035----56368-------40420566788 Q ss_pred -CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf -9866418999816856765310001112344226666535777747706599999999961466578807999738 Q gi|254780836|r 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674) Q Consensus 286 -~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674) .....+||+|+++==|- |-..+ ..||..+-..|++. |...+-.| T Consensus 165 ~~~~~~k~D~I~~~~vle-------------Hi~dp---------------~~fl~~i~~~L~~~----G~~~ievp 209 (416) T 3ndi_A 165 VRRTEGPANVIYAANTLC-------------HIPYV---------------QSVLEGVDALLAPD----GVFVFEDP 209 (416) T ss_dssp HHHHHCCEEEEEEESCGG-------------GCSCH---------------HHHHHHHHHHEEEE----EEEEEEEE T ss_pred HHHCCCCCCEEEEEEEHH-------------CCCCH---------------HHHHHHHHHHHCCC----CEEEEEEC T ss_conf 885158751887750053-------------15028---------------99999999874668----76999816 No 199 >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125} Probab=65.84 E-value=5.9 Score=17.77 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=54.2 Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998 Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674) Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674) .++...++..++- .. +| .+|.+--||+|-.-+.....+ ++ ..+++.|.+++.+++|+.++ T Consensus 39 ~~~~~~~l~~l~~-----~~--~~---~~VLEIGtg~G~Stl~la~~~----p~------~~v~tiD~~~~~~~~A~~~~ 98 (233) T 2gpy_A 39 DLLGMESLLHLLK-----MA--AP---ARILEIGTAIGYSAIRMAQAL----PE------ATIVSIERDERRYEEAHKHV 98 (233) T ss_dssp CHHHHHHHHHHHH-----HH--CC---SEEEEECCTTSHHHHHHHHHC----TT------CEEEEECCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH-----HH--CC---CEEEEEECCCCHHHHHHHHHC----CC------CEEEEEEECHHHHHHHHHHH T ss_conf 8899999999988-----65--89---989996112129999999878----99------77999970489999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCEEEEEEEC Q ss_conf 980887533456666823475457999-8-66418999816 Q gi|254780836|r 260 LIRRLESDPRRDLSKNIQQGSTLSKDL-F-TGKRFHYCLSN 298 (674) Q Consensus 260 li~g~~~d~~~~~~~NI~~GdTL~~d~-~-~~~kFD~vlaN 298 (674) --.|.... -.+..||.+.-.. . ....||+|... T Consensus 99 ~~~gl~~~------I~~~~gda~d~l~~l~~~~~fD~ifiD 133 (233) T 2gpy_A 99 KALGLESR------IELLFGDALQLGEKLELYPLFDVLFID 133 (233) T ss_dssp HHTTCTTT------EEEECSCGGGSHHHHTTSCCEEEEEEE T ss_pred HHHHHCCC------CEEEECCHHHHHHHHCCCCCCCEEEEC T ss_conf 99742121------126533287777751135776289972 No 200 >2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A* Probab=64.34 E-value=6.3 Score=17.59 Aligned_cols=145 Identities=11% Similarity=-0.011 Sum_probs=71.1 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674) .|+=---|.||.+-+. .... ...++-..|+++....+|+--+-... ....+..-++..+|-..-=.. T Consensus 81 ~vLiiGgG~G~~~~el-------lk~~---~~~~i~~VEiD~~Vi~~a~~~f~~~~---~~~~d~rv~v~~~Da~~~l~~ 147 (283) T 2i7c_A 81 NVLVVGGGDGGIIREL-------CKYK---SVENIDICEIDETVIEVSKIYFKNIS---CGYEDKRVNVFIEDASKFLEN 147 (283) T ss_dssp EEEEEECTTSHHHHHH-------TTCT---TCCEEEEEESCHHHHHHHHHHCTTTS---GGGGSTTEEEEESCHHHHHHH T ss_pred EEEEECCCCHHHHHHH-------HHCC---CCCEEEEECCCHHHHHHHHHHHHHCC---CCCCCCCCCEEECHHHHHHHH T ss_conf 4999838834999999-------9749---96379997478999999998746502---422487652896068999974 Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCC Q ss_conf 6641899981685676531000111234422666653577774770659999999996146657880799973-897134 Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLF 366 (674) Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF 366 (674) ...+||+|+..++-.. .. +.+=-+.-|.+.+-..|++. | .+|. .+|+.+ T Consensus 148 ~~~~yDvIi~D~~dp~--~~----------------------~~~L~t~eF~~~~~~~L~~~----G--i~v~q~~s~~~ 197 (283) T 2i7c_A 148 VTNTYDVIIVDSSDPI--GP----------------------AETLFNQNFYEKIYNALKPN----G--YCVAQCESLWI 197 (283) T ss_dssp CCSCEEEEEEECCCTT--TG----------------------GGGGSSHHHHHHHHHHEEEE----E--EEEEECCCTTT T ss_pred CCCCCCEEEEECCCCC--CC----------------------HHHHCCHHHHHHHHHHCCCC----C--EEEEECCCCCC T ss_conf 6887777999479988--74----------------------26554899999998761899----6--89994788010 Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE Q ss_conf 7764432689999998849468883176776557886169 Q gi|254780836|r 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 (674) Q Consensus 367 ~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~ 406 (674) .-.. -..|++.+-+. + |.-.+|.+.|||| T Consensus 198 ~~~~---~~~i~~~l~~~-F-------~~v~~y~~~iPty 226 (283) T 2i7c_A 198 HVGT---IKNMIGYAKKL-F-------KKVEYANISIPTY 226 (283) T ss_dssp CHHH---HHHHHHHHHTT-C-------SEEEEEEEECTTS T ss_pred CHHH---HHHHHHHHHHH-C-------CCEEEEEEEECCC T ss_conf 7999---99999988765-8-------9547899896453 No 201 >3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; 1.91A {Methanocaldococcus jannaschii DSM2661} Probab=63.04 E-value=6.6 Score=17.44 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=24.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 6654046899999999985310053332255046666788999 Q gi|254780836|r 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 212 PaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) -+|.++.|-..+...+...+.+ ...||-|-...+..+ T Consensus 124 ~~~~sa~Fa~~aV~ll~~lg~d------~l~FG~e~~~~~~~~ 160 (357) T 3gmi_A 124 GIMGSGQYMRCLIKMFYSLGAE------IIPRGYIPEKTMEKV 160 (357) T ss_dssp GGSCHHHHHHHHHHHHHHHTCC------EEEEEECCCHHHHHH T ss_pred EEECCHHHHHHHHHHHHHCCCC------EEECCCCCHHHHHHH T ss_conf 6744278898898888872975------220158882799999 No 202 >3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A* Probab=61.67 E-value=7 Score=17.28 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=66.4 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC-C Q ss_conf 31176654046899999999985310053332255046666788999999989-808875334566668234754579-9 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSK-D 285 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~-d 285 (674) .|+=---|.||.+-+..+| . ....+-..|++++...+|+.-+- .++ ...+..-+|..+|-..- . T Consensus 98 ~VLIiGgGdG~~~rellk~-------~---~v~~v~~VEID~~Vi~~~~~~~p~~~~----~~~dprv~iii~D~~~~l~ 163 (304) T 3bwc_A 98 RVLIIGGGDGGVLREVLRH-------G---TVEHCDLVDIDGEVMEQSKQHFPQISR----SLADPRATVRVGDGLAFVR 163 (304) T ss_dssp EEEEEECTTSHHHHHHHTC-------T---TCCEEEEEESCHHHHHHHHHHCHHHHG----GGGCTTEEEEESCHHHHHH T ss_pred EEEEECCCCHHHHHHHHHC-------C---CCCEEEEEECCHHHHHHHHHHCHHHHC----CCCCCCEEEEECHHHHHHH T ss_conf 6999838937999999965-------9---942799980588999999986544301----1149864899866999997 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC Q ss_conf 98664189998168567653100011123442266665357777477065999999999614665788079997389713 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674) ...+.+||+|+...+-.. . ...+. -+.-|.+.+-..|++. |. .++-.+|+. T Consensus 164 ~~~~~~yDvIi~D~~dp~---~------------~~~~L---------~t~eFy~~~~~~L~~~----Gv-~v~q~~s~~ 214 (304) T 3bwc_A 164 QTPDNTYDVVIIDTTDPA---G------------PASKL---------FGEAFYKDVLRILKPD----GI-CCNQGESIW 214 (304) T ss_dssp SSCTTCEEEEEEECC---------------------------------CCHHHHHHHHHHEEEE----EE-EEEEECCTT T ss_pred HCCCCCCCEEEEECCCCC---C------------CHHHH---------CCHHHHHHHHHHHCCC----CE-EEEECCCCC T ss_conf 463468768999089988---7------------25765---------4299999999983789----88-999078854 Q ss_pred CCCCCCCCHHHHHHHHHHC Q ss_conf 4776443268999999884 Q gi|254780836|r 366 FNGRAGSGESEIRRWLLEN 384 (674) Q Consensus 366 F~G~agsGEs~IRk~lie~ 384 (674) +.... -..+.+.+-+- T Consensus 215 ~~~~~---~~~~~~~l~~~ 230 (304) T 3bwc_A 215 LDLEL---IEKMSRFIRET 230 (304) T ss_dssp TCHHH---HHHHHHHHHHH T ss_pred CCHHH---HHHHHHHHHHH T ss_conf 48899---99999999873 No 203 >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Probab=61.35 E-value=4.3 Score=18.69 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=40.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCC Q ss_conf 031176654046899999999985310053332255046666788999999989808875334566668234754--579 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--LSK 284 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT--L~~ 284 (674) .+|.|-+||.|||= .+.+. ++.. .-.+++.|+++..-..-+.|- +. ..+..+|- +.. T Consensus 3 lkvidLFsG~GG~~-~gl~~-------aG~~-~~~v~a~e~d~~a~~ty~~N~---~~---------~~~~~~di~~~~~ 61 (343) T 1g55_A 3 LRVLELYSGVGGMH-HALRE-------SCIP-AQVVAAIDVNTVANEVYKYNF---PH---------TQLLAKTIEGITL 61 (343) T ss_dssp EEEEEETCTTCHHH-HHHHH-------HTCS-EEEEEEECCCHHHHHHHHHHC---TT---------SCEECSCGGGCCH T ss_pred CEEEEECCCHHHHH-HHHHH-------CCCC-CEEEEEEECCHHHHHHHHHHC---CC---------CCEEECCHHHCCH T ss_conf 77999182764899-99997-------4999-869999989999999999978---99---------9754075334989 Q ss_pred CCCCCCEEEEEEECCCC Q ss_conf 99866418999816856 Q gi|254780836|r 285 DLFTGKRFHYCLSNPPF 301 (674) Q Consensus 285 d~~~~~kFD~vlaNPPF 301 (674) ..++...+|++++-||= T Consensus 62 ~~~~~~~~Dll~ggpPC 78 (343) T 1g55_A 62 EEFDRLSFDMILMSPPC 78 (343) T ss_dssp HHHHHHCCSEEEECCC- T ss_pred HHCCCCCCCEEEEECCC T ss_conf 57587786779972899 No 204 >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Probab=59.54 E-value=7.6 Score=17.04 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=44.5 Q ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 13877640311766540468999999999853100533322550466667889999999898088753345666682347 Q gi|254780836|r 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 (674) Q Consensus 200 ~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~G 279 (674) ++.+-....|.|-+||-|||=. +.+. ++. -.+++.|+++..-.+-+.|. +. ...| T Consensus 5 ~~~~~~~lr~~~lFsG~GG~~~-gl~~-------aG~---~~~~a~e~d~~a~~~~~~N~---~~-----------~~~~ 59 (327) T 2c7p_A 5 KDKQLTGLRFIDLFAGLGGFRL-ALES-------CGA---ECVYSNEWDKYAQEVYEMNF---GE-----------KPEG 59 (327) T ss_dssp SSCTTTTCEEEEETCTTTHHHH-HHHH-------TTC---EEEEEECCCHHHHHHHHHHH---SC-----------CCBS T ss_pred CCCCCCCCEEEEECCCCCHHHH-HHHH-------CCC---EEEEEEECCHHHHHHHHHHC---CC-----------CCCC T ss_conf 4356899818996807468999-9998-------799---79999938999999999877---99-----------9757 Q ss_pred CCCCCCCCCCCEEEEEEECCCC Q ss_conf 5457999866418999816856 Q gi|254780836|r 280 STLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 280 dTL~~d~~~~~kFD~vlaNPPF 301 (674) |--.-+.-.-..+|++++-||- T Consensus 60 Di~~~~~~~~~~~Dll~gg~PC 81 (327) T 2c7p_A 60 DITQVNEKTIPDHDILCAGFPC 81 (327) T ss_dssp CGGGSCGGGSCCCSEEEEECCC T ss_pred CHHHCCHHHCCCCCEEEECCCC T ss_conf 5323885147775679975898 No 205 >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Probab=57.65 E-value=8.2 Score=16.84 Aligned_cols=145 Identities=11% Similarity=0.042 Sum_probs=73.7 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-C Q ss_conf 031176654046899999999985310053332255046666788999999989808875334566668234754579-9 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D 285 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d 285 (674) .+|.+--||+|---. ++.+.-+ ....+++.|.+++.+.+++-++--.|..... .+..|+.... + T Consensus 60 k~ILEiGt~~G~St~----~la~al~-----~~g~i~tie~~~~~~~~a~~~~~~~g~~~~i------~~~~~~~~d~l~ 124 (223) T 3duw_A 60 RNILEIGTLGGYSTI----WLARGLS-----SGGRVVTLEASEKHADIARSNIERANLNDRV------EVRTGLALDSLQ 124 (223) T ss_dssp SEEEEECCTTSHHHH----HHHTTCC-----SSCEEEEEESCHHHHHHHHHHHHHTTCTTTE------EEEESCHHHHHH T ss_pred CEEEEEECCCCHHHH----HHHHHCC-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCEE------EEEECCCHHHHH T ss_conf 889998344278999----9997488-----8885999944888899999999984997646------687345236777 Q ss_pred C---CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 9---8664189998168567653100011123442266665357777477065999999999614665788079997389 Q gi|254780836|r 286 L---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674) Q Consensus 286 ~---~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674) . .....||+|...-. +.. -..++......|++ || .||..+ T Consensus 125 ~L~~~~~~~fD~ifiD~~-----~~~--------------------------~~~~~~~~~~lLrp----GG--vii~Dn 167 (223) T 3duw_A 125 QIENEKYEPFDFIFIDAD-----KQN--------------------------NPAYFEWALKLSRP----GT--VIIGDN 167 (223) T ss_dssp HHHHTTCCCCSEEEECSC-----GGG--------------------------HHHHHHHHHHTCCT----TC--EEEEES T ss_pred HHHHCCCCCEEEEEEECC-----HHH--------------------------HHHHHHHHHHCCCC----CC--EEEEEC T ss_conf 765057876659999657-----466--------------------------89999999822589----97--899967 Q ss_pred CCCCCCCCC-----CCH-HHHHH---HHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 713477644-----326-89999---9988494688831767765578861 Q gi|254780836|r 363 SPLFNGRAG-----SGE-SEIRR---WLLENDLIEAIVALPTDLFFRTNIA 404 (674) Q Consensus 363 s~LF~G~ag-----sGE-s~IRk---~lie~d~ieaII~LP~~lFynTgI~ 404 (674) +||.|.-. ... ..||+ ++.++.-+++++-.|..-...-|+. T Consensus 168 -v~~~g~v~~~~~~~~~~~~~r~f~~~i~~d~~~~~~~Lp~~g~~~~DGl~ 217 (223) T 3duw_A 168 -VVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFI 217 (223) T ss_dssp -CSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEE T ss_pred -CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEE T ss_conf -86687535854468889999999999971999669984057987898479 No 206 >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 Probab=55.31 E-value=8.9 Score=16.59 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=59.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 031176654046899999999985310053332255046666788999999989-8088753345666682347545799 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ++|+--.+|+|+.+-+... . ....++-..|++|....+|+..+- +.+.. ..+..-+|..+|-..-= T Consensus 79 k~vLiiG~G~G~~~~~ll~-------~---~~~~~i~~VEiDp~Vi~~a~~~f~~~~~~~---~~dprv~v~~~Da~~~l 145 (314) T 1uir_A 79 KRVLIVGGGEGATLREVLK-------H---PTVEKAVMVDIDGELVEVAKRHMPEWHQGA---FDDPRAVLVIDDARAYL 145 (314) T ss_dssp CEEEEEECTTSHHHHHHTT-------S---TTCCEEEEEESCHHHHHHHHHHCHHHHTTG---GGCTTEEEEESCHHHHH T ss_pred CEEEEECCCCHHHHHHHHH-------C---CCCCEEEEECHHHHHHHHHHHCCCCCCCCC---CCCCEEEEEECHHHHHH T ss_conf 8799988983799999986-------5---996779874021899999875183013453---56870699972599999 Q ss_pred CCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 986641899981685--6765310001112344226666535777747706599999999961466 Q gi|254780836|r 286 LFTGKRFHYCLSNPP--FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 (674) Q Consensus 286 ~~~~~kFD~vlaNPP--Fg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~ 349 (674) .....+||+|+..++ ++.+ .|+..=-+--|.+.+-..|++. T Consensus 146 ~~~~~~yDvIi~D~~dp~~~~-----------------------~~~~~L~t~eF~~~~~~~L~~~ 188 (314) T 1uir_A 146 ERTEERYDVVIIDLTDPVGED-----------------------NPARLLYTVEFYRLVKAHLNPG 188 (314) T ss_dssp HHCCCCEEEEEEECCCCBSTT-----------------------CGGGGGSSHHHHHHHHHTEEEE T ss_pred HHCCCCCCEEEECCCCCCCCC-----------------------CHHHHHCCHHHHHHHHHHCCCC T ss_conf 748776788998788754577-----------------------5144444599999999746898 No 207 >2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} Probab=54.86 E-value=9.1 Score=16.54 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=10.7 Q ss_pred CCCCCC-CCCCCCCHHHHHHHHHHC Q ss_conf 897134-776443268999999884 Q gi|254780836|r 361 SSSPLF-NGRAGSGESEIRRWLLEN 384 (674) Q Consensus 361 ngs~LF-~G~agsGEs~IRk~lie~ 384 (674) ||+-|| ||.-||....+.|.+-|| T Consensus 569 ~GGglfETGAGGSAPKhVqQ~~~En 593 (738) T 2b0t_A 569 AGGGLFETGAGGSAPKHVQQVQEEN 593 (738) T ss_dssp TSCEEEECCSSCCCHHHHHHHHHHS T ss_pred CCCCEEECCCCCCCCHHHHHHHHCC T ss_conf 4783232488888618999998727 No 208 >1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Probab=52.44 E-value=9.9 Score=16.30 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=15.7 Q ss_pred ECCCCCCC-CCCCCCCHHHHHHHHHHCC Q ss_conf 73897134-7764432689999998849 Q gi|254780836|r 359 VLSSSPLF-NGRAGSGESEIRRWLLEND 385 (674) Q Consensus 359 V~ngs~LF-~G~agsGEs~IRk~lie~d 385 (674) .++|+-|| ||.-||....+++.+=|++ T Consensus 571 Lm~GGgLFETGAGGSAPKhvqQ~~~E~h 598 (741) T 1itw_A 571 LMSGGGLFETGAGGSAPKHVQQFLEEGY 598 (741) T ss_dssp BTTSCEEEESCSSCCCHHHHHHHHHHSC T ss_pred ECCCCEEEECCCCCCCHHHHHHHHHCCC T ss_conf 5158714624999970599999976284 No 209 >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Probab=52.30 E-value=10 Score=16.28 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=59.8 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.+... +.. .++|-++.+. ...+..+|.. +- T Consensus 68 ~~~IlDiGCG~G~~~~~-------l~~--------~v~~~D~~~~----------------------~~~~~~~d~~-~l 109 (215) T 2zfu_A 68 SLVVADFGCGDCRLASS-------IRN--------PVHCFDLASL----------------------DPRVTVCDMA-QV 109 (215) T ss_dssp TSCEEEETCTTCHHHHH-------CCS--------CEEEEESSCS----------------------STTEEESCTT-SC T ss_pred CCEEEEECCCCCHHHHH-------HCC--------EEEEEECCCC----------------------CCCEEECCCC-CC T ss_conf 88799832783399986-------302--------2677302368----------------------8605772432-48 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC Q ss_conf 98664189998168567653100011123442266665357777477065999999999614665788079997389713 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674) .+++..||+|++.-=+ -|. |. -.+|+-+-.-||| ||++.|+-..|- T Consensus 110 p~~d~sfD~v~~~~~l--~~~--------------------------d~-~~~l~E~~RvLkp----gG~l~i~e~~~r- 155 (215) T 2zfu_A 110 PLEDESVDVAVFCLSL--MGT--------------------------NI-RDFLEEANRVLKP----GGLLKVAEVSSR- 155 (215) T ss_dssp SCCTTCEEEEEEESCC--CSS--------------------------CH-HHHHHHHHHHEEE----EEEEEEEECGGG- T ss_pred CCCCCCCCEEEEECCE--ECC--------------------------CH-HHHHHHHHHHCCC----CEEEEEEEECCC- T ss_conf 8889968979997310--458--------------------------98-9999999985389----839999994100- Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 477644326899999988494688831767765 Q gi|254780836|r 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 (674) Q Consensus 366 F~G~agsGEs~IRk~lie~d~ieaII~LP~~lF 398 (674) |.. .....+.+-..++--.-..-..+.| T Consensus 156 ~~~-----~~~f~~~~~~~GF~~~~~~~~~~~f 183 (215) T 2zfu_A 156 FED-----VRTFLRAVTKLGFKIVSKDLTNSHF 183 (215) T ss_dssp CSC-----HHHHHHHHHHTTEEEEEEECCSTTC T ss_pred CCC-----HHHHHHHHHHCCCEEEEEECCCCCE T ss_conf 167-----8999999997898897652577878 No 210 >3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B* Probab=51.70 E-value=10 Score=16.22 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=23.4 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH Q ss_conf 35775444236289999874024567333761144389999999998622766575368179 Q gi|254780836|r 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 (674) Q Consensus 121 ~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~ 182 (674) ...|..|++...|...+.+...-.++ +....+..+-|-|+.-+++. .|..|||-- T Consensus 72 ~~~I~~Ldd~~~l~~~L~~l~~~~~~---v~~~~f~~~g~~ll~~l~~~----lG~~~T~e~ 126 (146) T 3d1k_B 72 DRGMKNMDNIADAYTDLSTLHSEKLH---VDPDNFKLLSDCITIVLAAK----MGHAFTAET 126 (146) T ss_dssp HHHHHTGGGHHHHTHHHHHHHHHTTC---CCTHHHHHHHHHHHHHHHHH----HGGGSCHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHH----CCCCCCHHH T ss_conf 99998242388899999996044339---98777999999999999987----365399999 No 211 >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Probab=50.68 E-value=11 Score=16.12 Aligned_cols=144 Identities=17% Similarity=0.018 Sum_probs=65.9 Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH-----------------HCCC Q ss_conf 77640311766540468999999999853100533322550466667889999999898-----------------0887 Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI-----------------RRLE 265 (674) Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli-----------------~g~~ 265 (674) ...++++.|-.||+|-+-. ....+. ...++|.|+.+......+..+-- .|.. T Consensus 69 ~~~G~~lLDvG~Gpgi~~~------l~a~~~-----~~~I~~~D~s~~~~~~~~kw~~~~~~~~dws~~~~~v~~leg~~ 137 (289) T 2g72_A 69 EVSGRTLIDIGSGPTVYQL------LSACSH-----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289) T ss_dssp CSCCSEEEEETCTTCCGGG------TTGGGG-----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC T ss_pred CCCCCEEEEECCCCCHHHH------HHHCCC-----CCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC T ss_conf 8789889995747136788------875646-----78148854989999999988752877667226788887301566 Q ss_pred CCC------CCCCCCCCCCCCCC-----CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH Q ss_conf 533------45666682347545-----7999866418999816856765310001112344226666535777747706 Q gi|254780836|r 266 SDP------RRDLSKNIQQGSTL-----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674) Q Consensus 266 ~d~------~~~~~~NI~~GdTL-----~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674) ... ......++...|.+ .........||+|++.-=.- .+. +.. . T Consensus 138 ~~~~~~~~~lr~~vk~v~~~Dv~~~~~l~~~~~~~~~fD~v~~~f~l~--------~~~----------------~~~-~ 192 (289) T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE--------AVS----------------PDL-A 192 (289) T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHH--------HHC----------------SSH-H T ss_pred CCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCEEEHHHHHH--------HHC----------------CCH-H T ss_conf 405667788776403540201357887676766788606771076798--------857----------------988-9 Q ss_pred HH-HHHHHHHHHHCCCCCCCCEEEEEC--CCCCCCCCCC-----CCCHHHHHHHHHHCCC Q ss_conf 59-999999996146657880799973--8971347764-----4326899999988494 Q gi|254780836|r 335 SM-LFLMHLANKLELPPNGGGRAAIVL--SSSPLFNGRA-----GSGESEIRRWLLENDL 386 (674) Q Consensus 335 ~~-lFlqh~i~klk~~~~~ggr~aIV~--ngs~LF~G~a-----gsGEs~IRk~lie~d~ 386 (674) ++ ..+.++.+-||| ||..+++- +.+--..|+. .=.+..||+.|-+.++ T Consensus 193 ~~~~~~~~~~~lLkp----GG~li~~~~~~~~~y~~g~~~f~~~~l~~e~v~~~l~~aGf 248 (289) T 2g72_A 193 SFQRALDHITTLLRP----GGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGY 248 (289) T ss_dssp HHHHHHHHHHTTEEE----EEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTE T ss_pred HHHHHHHHHHHHHCC----CCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 999999999997579----96899999617765673782213103299999999998799 No 212 >3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} Probab=50.67 E-value=6.7 Score=17.42 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 0311766540468999999999853100 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH 234 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~ 234 (674) .-++||-++|||=++.|.+.+++++... T Consensus 132 villDPmlATG~s~~~ai~~L~~~Gv~~ 159 (217) T 3dmp_A 132 FILCDPMVATGYSAAHAIDVLKRRGVPG 159 (217) T ss_dssp EEEECSEESSSHHHHHHHHHHHTTTCCG T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC T ss_conf 9999440257757999999999849984 No 213 >3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} Probab=46.92 E-value=12 Score=15.74 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=34.7 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCE-------EEEEEECCCCCCCCCCEEEEECHHHH Q ss_conf 8999999884946888317677655788616-------99999468874348838997236776 Q gi|254780836|r 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIAT-------YLWILSNRKTEERRGKVQLINATDLW 431 (674) Q Consensus 375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t-------~Iwil~k~K~~~rkgkV~lIDAs~~~ 431 (674) .++|+.|-++++=-++|.-|.|+||=||..+ .++|. .+.. -++++++...- T Consensus 6 ~klr~~m~~~~ld~~lit~~~ni~YlTGf~~~~~er~~~l~i~-~~~~-----~~li~~~~~~~ 63 (132) T 3ooo_A 6 NRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLFVY-EDRD-----PILFVPALEVS 63 (132) T ss_dssp HHHHHHHHHTTCSEEEECCHHHHHHHHSCCCCCTTSCCEEEEE-SSSC-----CEEEEEGGGHH T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCCCEEEEEEC-CCCC-----EEEECCHHHHH T ss_conf 9999999986999999925313247408667876431677876-8997-----68972477688 No 214 >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* Probab=45.46 E-value=10 Score=16.27 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=24.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 76654046899999999985310053332255046666 Q gi|254780836|r 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674) Q Consensus 211 DPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674) =.+||+||+++-...++++.++. ..++|.|-. T Consensus 177 v~~vG~Gg~~~Gi~~~lk~~~~~------~~iigVep~ 208 (313) T 2q3b_A 177 VAGVGTGGTITGVAQVIKERKPS------ARFVAVEPA 208 (313) T ss_dssp EEECSSSHHHHHHHHHHHHHCTT------CEEEEEEET T ss_pred EECCCCCHHHHHHHHHHHHHCCC------CEEEEECCC T ss_conf 97888718799999999972999------889998789 No 215 >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Probab=43.90 E-value=13 Score=15.44 Aligned_cols=144 Identities=16% Similarity=0.223 Sum_probs=71.2 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989-80887533456666823475457999 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .|+=-.-|.|+.+-+.. .. ....++-..|++++...+|+.-+- ..+.-. +..-+|..+|...-=. T Consensus 78 ~VLiiGgG~G~~~~~~l-------~~---~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~----dprv~i~~~Da~~~l~ 143 (275) T 1iy9_A 78 HVLVVGGGDGGVIREIL-------KH---PSVKKATLVDIDGKVIEYSKKFLPSIAGKLD----DPRVDVQVDDGFMHIA 143 (275) T ss_dssp EEEEESCTTCHHHHHHT-------TC---TTCSEEEEEESCHHHHHHHHHHCHHHHTTTT----STTEEEEESCSHHHHH T ss_pred EEEEEECCCHHHHHHHH-------HC---CCCCEEEEEEECHHHHHHHHHHCHHHCCCCC----CCCCEEEECHHHHHHH T ss_conf 59999079639999999-------65---9964699997088999999985723135323----8774389885899875 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCC Q ss_conf 866418999816856765310001112344226666535777747706599999999961466578807999738-9713 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPL 365 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n-gs~L 365 (674) -...+||+|+..+|-.. ... . + |= +.-|.+.+-..|++. | .+|.+ +|+. T Consensus 144 ~~~~~yDvIi~D~~~p~--~~~------------~-~----L~-----t~eFy~~~~~~L~~~----G--v~v~q~~s~~ 193 (275) T 1iy9_A 144 KSENQYDVIMVDSTEPV--GPA------------V-N----LF-----TKGFYAGIAKALKED----G--IFVAQTDNPW 193 (275) T ss_dssp TCCSCEEEEEESCSSCC--SCC------------C-C----CS-----TTHHHHHHHHHEEEE----E--EEEEECCCTT T ss_pred CCCCCCCEEEEECCCCC--CCC------------H-H----HC-----CHHHHHHHHHHHCCC----C--EEEECCCCHH T ss_conf 05677678999389988--721------------2-1----16-----899999999874799----7--9998568813 Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE Q ss_conf 47764432689999998849468883176776557886169 Q gi|254780836|r 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 (674) Q Consensus 366 F~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~ 406 (674) +.... -..+.+-|-+. . |.-..|.+-|||| T Consensus 194 ~~~~~---~~~~~~tl~~v-F-------~~v~~y~~~iPty 223 (275) T 1iy9_A 194 FTPEL---ITNVQRDVKEI-F-------PITKLYTANIPTY 223 (275) T ss_dssp TCHHH---HHHHHHHHHTT-C-------SEEEEEEECCTTS T ss_pred HHHHH---HHHHHHHHHHH-C-------CCEEEEEEEEEEE T ss_conf 34678---89999999987-8-------9738999884032 No 216 >1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26 Probab=42.13 E-value=14 Score=15.27 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=39.7 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCC Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754--5799 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--LSKD 285 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT--L~~d 285 (674) .|.|-+||-||| ..+.+.. +. -.+++.|+++.....-+.| ++. .+..||- +... T Consensus 2 kv~~lF~G~Gg~-~~gl~~a-------G~---~~~~a~e~d~~a~~~~~~N---~~~----------~~~~~Di~~~~~~ 57 (324) T 1dct_A 2 NLISLFSGAGGL-DLGFQKA-------GF---RIICANEYDKSIWKTYESN---HSA----------KLIKGDISKISSD 57 (324) T ss_dssp EEEEESCSSCHH-HHHHHHH-------TC---EEEEEEECCHHHHHHHHHH---CCS----------EEEESCTTTSCGG T ss_pred EEEEECCCCCHH-HHHHHHC-------CC---EEEEEEECCHHHHHHHHHH---CCC----------CCCCCCHHHCCHH T ss_conf 099948074789-9999987-------99---7999996799999999987---899----------9724982459985 Q ss_pred CCCCCEEEEEEECCCC Q ss_conf 9866418999816856 Q gi|254780836|r 286 LFTGKRFHYCLSNPPF 301 (674) Q Consensus 286 ~~~~~kFD~vlaNPPF 301 (674) .+ .++|++++-||= T Consensus 58 ~~--~~~D~~~~g~PC 71 (324) T 1dct_A 58 EF--PKCDGIIGGPPC 71 (324) T ss_dssp GS--CCCSEEEECCCC T ss_pred HC--CCCCEEEECCCC T ss_conf 76--753657736998 No 217 >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Probab=40.38 E-value=15 Score=15.10 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=11.6 Q ss_pred EECCCCCCCEECCCCCCHH Q ss_conf 1565425320078869989 Q gi|254780836|r 582 IPDTNLTEYENVPYLESIQ 600 (674) Q Consensus 582 ~~D~~lrD~E~vpl~e~i~ 600 (674) ..|..|++++-|-+.|-|| T Consensus 789 ~~D~RL~GfDAvV~iEVIE 807 (950) T 3htx_A 789 EFDSRLHDVDIGTCLEVIE 807 (950) T ss_dssp SCCTTSCSCCEEEEESCGG T ss_pred CCCCCCCCCCEEEEEEEEE T ss_conf 5243104887699898750 No 218 >1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A* Probab=39.37 E-value=10 Score=16.15 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.7 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 3117665404689999999998531 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGS 232 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~ 232 (674) =++||-+.|||-++.|.+.+++.+. T Consensus 137 illDPmlATG~s~~~ai~~L~~~g~ 161 (216) T 1xtt_A 137 IIADPMIATASTMLKVLEEVVKANP 161 (216) T ss_dssp EEECSEESSSHHHHHHHHHHGGGCC T ss_pred EEECHHHHCHHHHHHHHHHHHHCCC T ss_conf 9727477541889999999874599 No 219 >3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metallo peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis atcc 367} Probab=38.08 E-value=16 Score=14.87 Aligned_cols=57 Identities=9% Similarity=0.166 Sum_probs=37.4 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE------EEEEECCCCCCCCCCEEEEECHHHHHHHHH Q ss_conf 89999998849468883176776557886169------999946887434883899723677657640 Q gi|254780836|r 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATY------LWILSNRKTEERRGKVQLINATDLWTSIRN 436 (674) Q Consensus 375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t~------Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk 436 (674) .++|+.|-++++=-.+|.=|+|++|=||-..+ ..++..+.. -++++++.......+. T Consensus 7 ~kl~~~m~~~~lD~~li~~~~ni~YlTG~~~~~~~r~~~l~i~~~~~-----~~li~~~~~~~~a~~~ 69 (140) T 3i7m_A 7 EQIQQWTAQHHASMTYLSNPKTIEYLTGFGSDPIERVLALVVFPDQD-----PFIFAPALEVEVIKET 69 (140) T ss_dssp HHHHHHHHHTTCSEEEECCHHHHHHHHCCCCCCCSSCCEEEECSSSC-----CEEEEEGGGHHHHHTT T ss_pred HHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCCCCEEEEEECCCCC-----EEEEECCCCHHHHHHC T ss_conf 99999999869999998464020112375666644337888778990-----8999884116779863 No 220 >3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas} Probab=37.27 E-value=17 Score=14.78 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=33.9 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCE-------EEEEEECCCCCCCCCCEEEEECHHH Q ss_conf 8999999884946888317677655788616-------9999946887434883899723677 Q gi|254780836|r 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIAT-------YLWILSNRKTEERRGKVQLINATDL 430 (674) Q Consensus 375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t-------~Iwil~k~K~~~rkgkV~lIDAs~~ 430 (674) .++|++|-++++=-.+|.=|.|++|=||... .++ +..+.. -++++++... T Consensus 6 ~rlr~~m~~~~lD~~li~~~~ni~YltGf~~~~~~r~~~li-i~~~g~-----~~l~~~~~~~ 62 (132) T 3o5v_A 6 DQIRLYLDQKGAELAIFSDPVTINYLTGFFCDPHERQLFLF-VYHDLA-----PVLFVPALEV 62 (132) T ss_dssp HHHHHHHHHTTCCEEEECCHHHHHHHHSCCCCCTTSCCEEE-EESSSC-----CEEEEEGGGH T ss_pred HHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCEEEEE-ECCCCC-----EEEEECHHHH T ss_conf 99999999869999999054130230286767643237889-757995-----7999566648 No 221 >2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28 Probab=37.13 E-value=17 Score=14.82 Aligned_cols=11 Identities=18% Similarity=0.470 Sum_probs=8.5 Q ss_pred EEEEEECCCCC Q ss_conf 89998168567 Q gi|254780836|r 292 FHYCLSNPPFG 302 (674) Q Consensus 292 FD~vlaNPPFg 302 (674) -|+|-..|||- T Consensus 188 ~~fvYlDPPY~ 198 (284) T 2dpm_A 188 GDFVYFDPPYI 198 (284) T ss_dssp TCEEEECCCCC T ss_pred CCEEEECCCCC T ss_conf 86899869987 No 222 >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* Probab=36.91 E-value=17 Score=14.75 Aligned_cols=130 Identities=11% Similarity=0.061 Sum_probs=66.3 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 31176654046899999999985310053332255046666788999999989-80887533456666823475457999 Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKDL 286 (674) Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674) .|+=---|.|+.+-+. .+... ...+-..|++++...+|+.-+- +.+. ..+..-+|..+|...-=. T Consensus 98 ~VLIiGgG~G~~~~el-------lk~~~---~~~v~~VEiD~~Vi~~a~~~~~~~~~~----~~dpRv~i~~~Da~~~l~ 163 (304) T 2o07_A 98 KVLIIGGGDGGVLREV-------VKHPS---VESVVQCEIDEDVIQVSKKFLPGMAIG----YSSSKLTLHVGDGFEFMK 163 (304) T ss_dssp EEEEEECTTSHHHHHH-------TTCTT---CCEEEEEESCHHHHHHHHHHCHHHHGG----GGCTTEEEEESCHHHHHH T ss_pred EEEEECCCCHHHHHHH-------HHCCC---CCEEEEECCCHHHHHHHHHHHHHHCCC----CCCCCEEEEEHHHHHHHH T ss_conf 6999879945999999-------86598---532687604699999999855553344----357724899607999997 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973897134 Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674) Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674) ....+||+|+..++-.. ... . + | -+--|.+++-..|++. |.++ +-.+|+.+ T Consensus 164 ~~~~~yDvIi~D~~dp~--~~~--------~-----~----L-----~t~eFy~~~~~~L~~~----Gv~v-~q~~s~~~ 214 (304) T 2o07_A 164 QNQDAFDVIITDSSDPM--GPA--------E-----S----L-----FKESYYQLMKTALKED----GVLC-CQGECQWL 214 (304) T ss_dssp TCSSCEEEEEEECC-----------------------------------CHHHHHHHHHEEEE----EEEE-EEEECTTT T ss_pred HCCCCCCEEEECCCCCC--CHH--------H-----H----H-----CCHHHHHHHHHHCCCC----CEEE-EECCCCCC T ss_conf 47777888999089988--635--------7-----6----5-----3799999999975999----8999-90898100 Q ss_pred CCCCCCCHHHHHHHHHH Q ss_conf 77644326899999988 Q gi|254780836|r 367 NGRAGSGESEIRRWLLE 383 (674) Q Consensus 367 ~G~agsGEs~IRk~lie 383 (674) .... -..|++.+-+ T Consensus 215 ~~~~---~~~i~~~l~~ 228 (304) T 2o07_A 215 HLDL---IKEMRQFCQS 228 (304) T ss_dssp CHHH---HHHHHHHHHH T ss_pred CHHH---HHHHHHHHHH T ss_conf 6999---9999999997 No 223 >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Probab=36.03 E-value=18 Score=14.66 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=45.9 Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799 Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674) Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674) ..+|.|-.||+|.++....+ .+++ +...++++ |.....++.+.--.|.... -....||-+. + T Consensus 203 ~~~vlDvGgG~G~~~~~l~~----~~P~------l~~~~~Dl-p~v~~~a~~~~~~~~~~~r------i~~~~~d~f~-~ 264 (369) T 3gwz_A 203 AATAVDIGGGRGSLMAAVLD----AFPG------LRGTLLER-PPVAEEARELLTGRGLADR------CEILPGDFFE-T 264 (369) T ss_dssp CSEEEEETCTTSHHHHHHHH----HCTT------CEEEEEEC-HHHHHHHHHHHHHTTCTTT------EEEEECCTTT-C T ss_pred CCEEEEECCCCCHHHHHHHH----HCCC------CEEEEEEC-HHHHHHHHHHHHHCCCCCC------EEEECCCCCC-C T ss_conf 86798857888889999999----7899------86999989-6888999987775177752------3685263233-5 Q ss_pred CCCCCEEEEEEECCCCCCCCC Q ss_conf 986641899981685676531 Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWE 306 (674) Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk 306 (674) . + ..+|+++..--+- +|. T Consensus 265 ~-p-~~~D~~~l~~vLh-~~~ 282 (369) T 3gwz_A 265 I-P-DGADVYLIKHVLH-DWD 282 (369) T ss_dssp C-C-SSCSEEEEESCGG-GSC T ss_pred C-C-CCCEEEEEECCCC-CCC T ss_conf 8-9-8860999804334-688 No 224 >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Probab=35.66 E-value=18 Score=14.62 Aligned_cols=98 Identities=15% Similarity=0.008 Sum_probs=49.8 Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC--HHHHH Q ss_conf 5368179999999973178401101387764031176654046899999999985310053332255046666--78899 Q gi|254780836|r 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE--PETHA 253 (674) Q Consensus 176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin--~~tya 253 (674) .-|-.|.--+|--.+=.-+. . -..+++.|--|.||||.-.+ .+.+. ..+||.+.- .-.|. T Consensus 15 ~~yVSRgg~KL~~al~~f~i------~-~~gk~~lDiGaStGGFTd~l----Lq~GA-------~~V~aVDVG~~qL~~~ 76 (232) T 3opn_A 15 LRYVSRGGLKLEKALKEFHL------E-INGKTCLDIGSSTGGFTDVM----LQNGA-------KLVYALDVGTNQLAWK 76 (232) T ss_dssp CCSSSTTHHHHHHHHHHTTC------C-CTTCEEEEETCTTSHHHHHH----HHTTC-------SEEEEECSSCCCCCHH T ss_pred CCCCCCHHHHHHHHHHHCCC------C-CCCCEEEECCCCCCHHHHHH----HHCCC-------CEEEEEECCCHHHHHH T ss_conf 98067589999999997799------8-68998998588985899999----98098-------7899994370343077 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC Q ss_conf 9999989808875334566668234754579998664189998168567 Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674) Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674) +. . ++........|++. ++...+....+|++++.--|- T Consensus 77 lr-------~-d~rV~~~E~~n~R~---~~~~~~~~~~~Dlvv~DvSFI 114 (232) T 3opn_A 77 IR-------S-DERVVVMEQFNFRN---AVLADFEQGRPSFTSIDVSFI 114 (232) T ss_dssp HH-------T-CTTEEEECSCCGGG---CCGGGCCSCCCSEEEECCSSS T ss_pred HH-------C-CCCCCCHHHHCCCC---CCHHHCCCCCCCEEEECCCHH T ss_conf 74-------3-98703202101445---533330468887899706517 No 225 >1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Probab=35.61 E-value=17 Score=14.79 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 03117665404689999999998531 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGS 232 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~ 232 (674) .=|.||-++|||=++.|.+.+++++. T Consensus 139 VillDPmlATG~s~~~ai~~L~~~G~ 164 (221) T 1o5o_A 139 VFLLDPMLATGVSSIKAIEILKENGA 164 (221) T ss_dssp EEEECSEESSSHHHHHHHHHHHHTTC T ss_pred EEEEHHHHHCCHHHHHHHHHHHHCCC T ss_conf 89877886477129999999986599 No 226 >1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Probab=35.30 E-value=17 Score=14.74 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 03117665404689999999998531 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGS 232 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~ 232 (674) .=++||-+.|||=++.|.+.+++++. T Consensus 127 villDPmlATG~s~~~ai~~L~~~G~ 152 (209) T 1i5e_A 127 FIIVDPMLATGGSAVAAIDALKKRGA 152 (209) T ss_dssp EEEECSEESSSHHHHHHHHHHHHTTC T ss_pred EEEECHHHHCCHHHHHHHHHHHHCCC T ss_conf 89758688647779999999996699 No 227 >2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial virulence factor, transferase/DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D* Probab=34.21 E-value=17 Score=14.72 Aligned_cols=10 Identities=20% Similarity=0.727 Sum_probs=8.2 Q ss_pred EEEEECCCCC Q ss_conf 9998168567 Q gi|254780836|r 293 HYCLSNPPFG 302 (674) Q Consensus 293 D~vlaNPPFg 302 (674) |+|-..|||- T Consensus 176 ~fiYlDPPY~ 185 (278) T 2g1p_A 176 SVVYCDPPYA 185 (278) T ss_dssp EEEEECCSCC T ss_pred EEEEECCCCC T ss_conf 0899789985 No 228 >2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A* Probab=33.70 E-value=14 Score=15.26 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=42.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC- Q ss_conf 031176654046899999999985310053332255046666788999999989-808875334566668234754579- Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSK- 284 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~- 284 (674) ..|+=--.|.||.+-+..+| .. ..+-..|++++...+|+--|- +.+.-.+......-+|..+|...- T Consensus 190 k~VLIIGGGdG~~~revlk~----~~-------~~V~~VEID~~Vve~akk~~~~~~~~~~d~~r~~rv~iii~Da~~~l 258 (364) T 2qfm_A 190 KDVLILGGGDGGILCEIVKL----KP-------KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL 258 (364) T ss_dssp CEEEEEECTTCHHHHHHHTT----CC-------SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH T ss_pred CEEEEEECCCHHHHHHHHHC----CC-------CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHH T ss_conf 85999969943999999861----78-------42899710389999999865654001210844234433557799999 Q ss_pred --CCCCCCEEEEEEECCC Q ss_conf --9986641899981685 Q gi|254780836|r 285 --DLFTGKRFHYCLSNPP 300 (674) Q Consensus 285 --d~~~~~kFD~vlaNPP 300 (674) -.-.+.+||+|+...+ T Consensus 259 ~~~~~~~~~yDvIi~Dl~ 276 (364) T 2qfm_A 259 KRYAKEGREFDYVINDLT 276 (364) T ss_dssp HHHHHHTCCEEEEEEECC T ss_pred HHHHHCCCCEEEEEEECC T ss_conf 974532475029998078 No 229 >3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2} Probab=33.67 E-value=19 Score=14.42 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=30.0 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC-------CCCCCCCCCCE Q ss_conf 78807999738971347764432689999998849468883176-------77655788616 Q gi|254780836|r 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-------TDLFFRTNIAT 405 (674) Q Consensus 351 ~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP-------~~lFynTgI~t 405 (674) ++||.+.+|..-.++++|++ ..-.+||++++++++.+=- +.-+|+|+..- T Consensus 133 ~~gg~i~~V~Gpavvhtg~~-----~ala~Lir~GYv~~LlaGNAlAtHDiE~al~gTsLG~ 189 (345) T 3c2q_A 133 TGTGGIAIVGGPAIIHTGGG-----PALAKMVELGYIQAILAGNALATHDIESALYGTSLGV 189 (345) T ss_dssp HSSCCEEEEECTHHHHTTCH-----HHHHHHHHTTCCSEEEEEHHHHHHHHHHHHHSEETTE T ss_pred CCCCEEEEEECCEEEECCCH-----HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCC T ss_conf 27975999978979966968-----9999999829640776341787766777762864476 No 230 >2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Probab=33.29 E-value=19 Score=14.38 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=35.0 Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 289999874024567333761144389999999998622766575368179999999973 Q gi|254780836|r 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 (674) Q Consensus 132 ~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll 191 (674) ....|++.|.+..-.| .|-|.| + +-+...|+..||.|.|-.+++.+-.|+ T Consensus 110 ~~~~Il~~F~D~~~ap--fSIH~i-------v-~~g~~~gk~~GeWfGPs~~a~~lk~L~ 159 (396) T 2cy7_A 110 SYFSVLNAFIDRKDSY--YSIHQI-------A-QMGVGEGKSIGQWYGPNTVAQVLKKLA 159 (396) T ss_dssp HHHHHHHTTSSSTTST--TCHHHH-------H-HHHHTTTCCTTCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCC--CCHHHH-------H-HHHHHCCCCCCCCCCHHHHHHHHHHHH T ss_conf 8999998745798787--479999-------9-999970998745058899999999998 No 231 >1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1 Probab=32.67 E-value=20 Score=14.31 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 03117665404689999999998531 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGS 232 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~ 232 (674) .-++||-+.|||=++.|.+.+++++. T Consensus 126 vil~DPmlATG~s~~~ai~~Lk~~g~ 151 (208) T 1v9s_A 126 AFLLDPMLATGGSASLALSLLKERGA 151 (208) T ss_dssp EEEECSEESSSHHHHHHHHHHHHTTC T ss_pred EEEECHHHHCCHHHHHHHHHHHHCCC T ss_conf 99968366343779999999986599 No 232 >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Probab=32.58 E-value=20 Score=14.30 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=6.8 Q ss_pred CCCCHHHHHHHHHHC Q ss_conf 443268999999884 Q gi|254780836|r 370 AGSGESEIRRWLLEN 384 (674) Q Consensus 370 agsGEs~IRk~lie~ 384 (674) .|+|-+.|.+.|++. T Consensus 25 SG~GK~tL~~~L~~~ 39 (219) T 1s96_A 25 SGAGKSSLIQALLKT 39 (219) T ss_dssp TTSCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH T ss_conf 999999999999863 No 233 >1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} SCOP: k.6.1.1 Probab=31.85 E-value=18 Score=14.61 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999871 Q gi|254780836|r 657 LKGVEAQIATLLEEMA 672 (674) Q Consensus 657 i~~le~~i~~ll~~~~ 672 (674) |.+||++|..|-+|++ T Consensus 2 iaalekeiaalekeia 17 (26) T 1u0i_A 2 IAALEKEIAALEKEIA 17 (26) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 1789999999999999 No 234 >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Probab=31.28 E-value=21 Score=14.16 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=83.3 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999 Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674) Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674) +.--...+..+|+.-|+-. . +| .+|..--|++|-=- .-....+.. ...+...|.+++...+ T Consensus 50 ~~m~~~p~~g~lL~~L~~~-----~--~~---k~vLEiGT~~GySt---l~la~al~~------~g~v~tie~~~~~~~~ 110 (237) T 3c3y_A 50 SYMSTSPLAGQLMSFVLKL-----V--NA---KKTIEVGVFTGYSL---LLTALSIPD------DGKITAIDFDREAYEI 110 (237) T ss_dssp GGGSCCHHHHHHHHHHHHH-----T--TC---CEEEEECCTTSHHH---HHHHHHSCT------TCEEEEEESCHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH-----H--CC---CEEEEEECCCCHHH---HHHHHHCCC------CCEEEEEEECHHHHHH T ss_conf 7677699999999999997-----3--99---88999705257899---999974899------8489999602676899 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCC------CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 99998980887533456666823475457------999866418999816856765310001112344226666535777 Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 (674) Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~------~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl 328 (674) |+.+.---|.... -.+..|+.+. .......+||+|...-. |.. T Consensus 111 A~~~~~~ag~~~~------i~~~~g~a~e~l~~l~~~~~~~~~fD~IFiDad-----k~~-------------------- 159 (237) T 3c3y_A 111 GLPFIRKAGVEHK------INFIESDAMLALDNLLQGQESEGSYDFGFVDAD-----KPN-------------------- 159 (237) T ss_dssp HHHHHHHTTCGGG------EEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC-----GGG-------------------- T ss_pred HHHHHHHCCCCCE------EEEEECCCCCCHHHHHHHCCCCCCCCEEEECCC-----HHH-------------------- T ss_conf 9999998499813------899962200001788874035777658997288-----888-------------------- Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCH-----------HHHHH---HHHHCCCEEEEEECC Q ss_conf 7477065999999999614665788079997389713477644326-----------89999---998849468883176 Q gi|254780836|r 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-----------SEIRR---WLLENDLIEAIVALP 394 (674) Q Consensus 329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGE-----------s~IRk---~lie~d~ieaII~LP 394 (674) ...++...+..|++ || .||..+ +||.|.-.... ..||+ +|-.+.-+++++ || T Consensus 160 ------y~~y~e~~~~lL~~----GG--iIi~DN-vL~~G~V~~~~~~~~~~~~~~~~~ir~fn~~i~~d~~~~~~l-LP 225 (237) T 3c3y_A 160 ------YIKYHERLMKLVKV----GG--IVAYDN-TLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVH-LP 225 (237) T ss_dssp ------HHHHHHHHHHHEEE----EE--EEEEEC-TTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEE-EC T ss_pred ------HHHHHHHHHHHCCC----CE--EEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EE T ss_conf ------99999999865489----84--999956-765885568532342134689999999999986189969999-64 No 235 >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Probab=30.54 E-value=22 Score=14.08 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=21.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC Q ss_conf 65404689999999998531005333225504666 Q gi|254780836|r 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 (674) Q Consensus 213 aCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEi 247 (674) +|||||.++-...++++.++.. .++|-|- T Consensus 179 ~vG~Gg~~~Gi~~~lk~~~~~~------~iv~ve~ 207 (322) T 1z7w_A 179 GIGTGGTITGAGKYLKEQNANV------KLYGVEP 207 (322) T ss_dssp ECSSSHHHHHHHHHHHHHCTTC------EEEEEEE T ss_pred CCCCCCHHHHHHHHHHHCCCCC------EEEEEEC T ss_conf 6677723578999887608987------8999812 No 236 >3ktb_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, structural genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482} Probab=30.46 E-value=13 Score=15.63 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=8.9 Q ss_pred EEECCC--CCCHH Q ss_conf 031176--65404 Q gi|254780836|r 207 RTLYDP--TCGTG 217 (674) Q Consensus 207 ~tIyDP--aCGTG 217 (674) ..|||| ||.|| T Consensus 7 ieifdpamCCstG 19 (106) T 3ktb_A 7 IEIFDPAMCCPTG 19 (106) T ss_dssp EEEEECSCSSTTS T ss_pred EEEECHHHCCCCC T ss_conf 7885511233789 No 237 >1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Probab=30.28 E-value=22 Score=14.06 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=23.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 03117665404689999999998531005 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~ 235 (674) .-+.||-+.|||=++.|.+.+++++...+ T Consensus 159 Vll~DPMLATG~S~~~ai~~L~~~Gv~~~ 187 (243) T 1bd3_D 159 VMLLDPMCATAGSVCKAIEVLLRLGVKEE 187 (243) T ss_dssp EEEECSEESSCHHHHHHHHHHHHHTCCGG T ss_pred EEEECCHHHCCHHHHHHHHHHHHCCCCCC T ss_conf 89868055057229999999997199854 No 238 >3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* Probab=30.00 E-value=10 Score=16.18 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=9.6 Q ss_pred CCCCCCCHHHHHHHHHHCCCE Q ss_conf 776443268999999884946 Q gi|254780836|r 367 NGRAGSGESEIRRWLLENDLI 387 (674) Q Consensus 367 ~G~agsGEs~IRk~lie~d~i 387 (674) |-..|||-.-.--|+...+.+ T Consensus 251 t~aCGSGa~A~a~~~~~~g~~ 271 (317) T 3ejx_A 251 TLACGTGACALVVAAVLEGRA 271 (317) T ss_dssp CSCCHHHHHHHHHHHHHTTSS T ss_pred CCCCHHHHHHHHHHHHHHCCC T ss_conf 757336899999999981999 No 239 >2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli} Probab=29.96 E-value=19 Score=14.52 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=22.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 031176654046899999999985310 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674) .=+.||-++|||=++.|.+.+++++.. T Consensus 126 villDPmlATG~s~~~ai~~L~~~G~~ 152 (208) T 2ehj_A 126 ALIVDPMLATGGSVIATIDLLKKAGCS 152 (208) T ss_dssp EEEEEEEESSCHHHHHHHHHHHHTTCC T ss_pred EEEECHHHHCCHHHHHHHHHHHHCCCC T ss_conf 999683674567799999999857998 No 240 >2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus} Probab=29.27 E-value=20 Score=14.27 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHH Q ss_conf 0311766540468999999999853 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCG 231 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~ 231 (674) .-+.||-++|||=++.|.+.+++.+ T Consensus 124 vlllDPmlATG~s~~~ai~~L~~~g 148 (208) T 2e55_A 124 VVILDPMLATGGTLEVALREILKHS 148 (208) T ss_dssp EEEECSEESSSHHHHHHHHHHHTTC T ss_pred EEEECHHHCCCCHHHHHHHHHHHCC T ss_conf 6983467615715999999998448 No 241 >3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A Probab=27.38 E-value=24 Score=13.73 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=35.7 Q ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC--------CCCCCCCEEEEEEECCCCCCCCCCE- Q ss_conf 8807999738971347764432689999998849468883176776--------5578861699999468874348838- Q gi|254780836|r 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--------FFRTNIATYLWILSNRKTEERRGKV- 422 (674) Q Consensus 352 ~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~l--------FynTgI~t~Iwil~k~K~~~rkgkV- 422 (674) .+.++.||-.|+++ +.+-++|++... ..+|.++ .+||||.+..+-........+.+.| T Consensus 174 ~~~~vlvVsHG~~i---------~~lv~~l~~~~~----~~~p~~~~~~~~~~~~~Ntsit~~~~~~~~~~~~~~~~~~~ 240 (265) T 3e9c_A 174 VPVHALMVSHGAFI---------RISVRHLVEDLQ----CCLPAGLKMNQVFSPCPNTGISRFIFTIHREESVLRATRIQ 240 (265) T ss_dssp CCCEEEEEECHHHH---------HHHHHHHHHTSC----EEECTTCCHHHHTSCCCTTCEEEEEEEEEEETTEEEEEEEE T ss_pred CCCEEEEECCCHHH---------HHHHHHHHHHHC----CCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEE T ss_conf 99769998998799---------999999998733----37887877777157778766889999516875545676049 Q ss_pred -EEEECHHHHH Q ss_conf -9972367765 Q gi|254780836|r 423 -QLINATDLWT 432 (674) Q Consensus 423 -~lIDAs~~~~ 432 (674) ..+|-..... T Consensus 241 ~~~~N~~~HL~ 251 (265) T 3e9c_A 241 GVFINRKDHLE 251 (265) T ss_dssp EEEEEECTTC- T ss_pred EEEECCHHHHH T ss_conf 99965725431 No 242 >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Probab=27.35 E-value=24 Score=13.73 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=25.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 031176654046899999999985310053332255046666 Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674) Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674) ..|+= +||+||+++-...++++.+++ +.++|.|-. T Consensus 181 D~Ivv-pvGgGGliaGia~~lK~~~P~------ikIIgVEp~ 215 (514) T 1tdj_A 181 DRVFV-PVGGGGLAAGVAVLIKQLMPQ------IKVIAVEAE 215 (514) T ss_dssp CEEEE-ECSSSHHHHHHHHHHHHHCTT------CEEEEEEET T ss_pred CEEEE-ECCHHHHHHHHHHHHHHHCCC------CEEEEECCC T ss_conf 99999-276419999999999986998------718877843 No 243 >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Probab=25.80 E-value=26 Score=13.55 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=39.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHH---HH-HHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998622766575368179999---99-9973178401101387764031176654046899999999985310 Q gi|254780836|r 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVH---LA-TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674) Q Consensus 158 iyE~LIrkFae~~~~~aGeffTPR~Vi~---Lm-v~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674) ..+..++.-.+...--..+|+-|..++- .+ -+++ +.+ ++....|. .+||+||++.-...++++.++. T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~-----eq~---~~~~d~vv-~~vG~Gg~~~Gi~~~~~~~~~~ 193 (304) T 1ve1_A 123 AREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELY-----EAL---EGRIDAFV-YGSGTGGTITGVGRYLKERIPH 193 (304) T ss_dssp HHHHHHHHHHHHTCBCCCTTTCHHHHHHHHHTHHHHHH-----HHT---TTCCSEEE-EECSSSHHHHHHHHHHHTTCTT T ss_pred HHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHH-----HHC---CCCCCEEE-ECCCCCHHHHHHHHHHHHCCCC T ss_conf 99999976431585006776540659999899999999-----964---99988899-6578807788999999754999 Q ss_pred CCCCCCEEEECCCCC Q ss_conf 053332255046666 Q gi|254780836|r 234 HKIPPILVPHGQELE 248 (674) Q Consensus 234 ~~~~~~~~lyGQEin 248 (674) ..++|.|-. T Consensus 194 ------~~vigve~~ 202 (304) T 1ve1_A 194 ------VKVIAVEPA 202 (304) T ss_dssp ------CEEEEEEEG T ss_pred ------CEEEEEECC T ss_conf ------889999148 No 244 >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Probab=25.11 E-value=6.8 Score=17.34 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=40.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC--CCCCCEEEEEEECCCCCCCCCCEEEEECHHH Q ss_conf 897134776443268999999884946888317677655--7886169999946887434883899723677 Q gi|254780836|r 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDL 430 (674) Q Consensus 361 ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy--nTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~ 430 (674) .++.||-+.---|.|.||+.=++.+-+.+-+.||...|- =|-....||+++- +.+.|..+|+... T Consensus 29 ~~~~LyestG~~G~S~I~~iD~~Tg~v~~~i~l~~~~fgeGit~~g~~lyvltw-----~~~~v~v~D~~t~ 95 (243) T 3mbr_X 29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW-----RNHEGFVYDLATL 95 (243) T ss_dssp ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES-----SSSEEEEEETTTT T ss_pred ECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEEE-----CCCEEEEECCCCC T ss_conf 899999979998857899998999959999988987437999683997999992-----2897999728885 No 245 >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Probab=24.45 E-value=28 Score=13.39 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=22.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 6654046899999999985310053332255046666 Q gi|254780836|r 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674) Q Consensus 212 PaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674) .+||+||++.-...++++..+. ...++|.|-. T Consensus 175 ~~vG~Gg~~~Gi~~~lk~~~~~-----~~~ii~vep~ 206 (303) T 1o58_A 175 AGVGTGGTISGVGRVLKGFFGN-----GVKIVAVEPA 206 (303) T ss_dssp EECSSSHHHHHHHHHHHHHHGG-----GSEEEEEEET T ss_pred EECCCCHHHHHHHHHHHHHCCC-----CCEEEEEECC T ss_conf 9668015378999999997599-----9889999428 No 246 >3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics, PSI, MCSG, protein structure initiative; HET: GOL; 2.20A {Streptococcus thermophilus lmg 18311} Probab=23.57 E-value=29 Score=13.28 Aligned_cols=52 Identities=10% Similarity=0.231 Sum_probs=34.3 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCC---CEEEEEEECCCCCCCCCCEEEEECHHHHHH Q ss_conf 89999998849468883176776557886---169999946887434883899723677657 Q gi|254780836|r 375 SEIRRWLLENDLIEAIVALPTDLFFRTNI---ATYLWILSNRKTEERRGKVQLINATDLWTS 433 (674) Q Consensus 375 s~IRk~lie~d~ieaII~LP~~lFynTgI---~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~ 433 (674) .++|++|-++++=-.+|.=|.|+||=||. +.++ +++.+ +-+++.|....... T Consensus 9 ~~lr~~m~~~~lD~~li~~~~ni~Yltg~~~~~~~l-li~~~------~~~l~~~~r~~~~a 63 (131) T 3il0_A 9 ERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTNATV-FITKN------RRLFLTDSRYTLIA 63 (131) T ss_dssp HHHHHHHHHHTCSEEEECSHHHHHHHHSCCCSSEEE-EEESS------CEEEEECTTSHHHH T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHCEECCCEEE-EEECC------CCEEEEECHHHHHH T ss_conf 999999998699999986789823433204257799-99689------86799841467999 No 247 >3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene} Probab=22.57 E-value=30 Score=13.15 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=9.9 Q ss_pred CCCCCCCCCCCCHHHHHHHH Q ss_conf 66665017998989999999 Q gi|254780836|r 638 NRFFYQYQPSRKLQDIDAEL 657 (674) Q Consensus 638 ~r~FY~y~~~r~l~ei~~~i 657 (674) ||.-|+.+.--.|+.|.+.+ T Consensus 10 nrvayklkenaklenivarl 29 (56) T 3he4_A 10 NRVAYKLKENAKLENIVARL 29 (56) T ss_dssp -CCCCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHH T ss_conf 99999998510599999999 No 248 >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3fgp_A* 3dki_A* 3dwi_A* Probab=22.18 E-value=31 Score=13.10 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=20.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC Q ss_conf 66540468999999999853100533322550466 Q gi|254780836|r 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 (674) Q Consensus 212 PaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE 246 (674) -++||||.++-...++++.++.. .++|-| T Consensus 183 ~~vG~GG~~~Gi~~~lk~~~~~~------~vv~Ve 211 (325) T 3dwg_A 183 AGLGTTGTLMGTGRFLREHVANV------KIVAAE 211 (325) T ss_dssp EECSSSHHHHHHHHHHHHHSTTC------EEEEEE T ss_pred EEECHHHHHHHHHHHHHHHCCCC------EEEEEC T ss_conf 98683888999999899759998------899978 No 249 >3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Probab=21.99 E-value=31 Score=13.08 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=38.0 Q ss_pred CCCCC-CCCCEEEEEEECCC----CCCCCCCEEEEE------------CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 76557-88616999994688----743488389972------------36776576404664420698999999999972 Q gi|254780836|r 396 DLFFR-TNIATYLWILSNRK----TEERRGKVQLIN------------ATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 (674) Q Consensus 396 ~lFyn-TgI~t~Iwil~k~K----~~~rkgkV~lID------------As~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~ 458 (674) |+||| .++.-.+++..... ..+++|+|-.|- ||+.. ...|+..-.|++++++.+.+.... T Consensus 2 ~~fyN~~~~gdvL~~~~~~~~~~~~~e~~~~v~~i~~~~~~~g~Nif~~s~~~---~~~~~g~i~l~~~~i~~l~~~l~~ 78 (199) T 3bu2_A 2 NLFYNKEAVGDVAFLQINPTEGEYNYVTQGDVVEIQNDGEVVGYNIFNASNKA---TLTGNGHIKLTETLVQAFQKAIEA 78 (199) T ss_dssp EEEEETTTTEEEEEEECCCCCCCEEEEEETTEEEEEETTEEEEEEEETGGGTS---CCC---CCCCCHHHHHHHHHHHHH T ss_pred EEEECCCCCCCEEEEEECCCCCCCCEEEECCEEEECCCCEEEEEEEECCCCCC---CCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 25746755896799995698630031660878999018918899874012221---226786212699999999999987 No 250 >1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase/DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A* Probab=21.97 E-value=18 Score=14.58 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=7.7 Q ss_pred EEEEEECCCCC Q ss_conf 89998168567 Q gi|254780836|r 292 FHYCLSNPPFG 302 (674) Q Consensus 292 FD~vlaNPPFg 302 (674) -|+|-..|||- T Consensus 165 ~~fvYlDPPY~ 175 (259) T 1yf3_A 165 GDFVYVDPPYL 175 (259) T ss_dssp TEEEEECCCCT T ss_pred CEEEEECCCCC T ss_conf 61899789876 No 251 >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Probab=21.72 E-value=31 Score=13.04 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=57.1 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889 Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674) Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674) ..|++.....++-.|.+.| .+.+..+|++--||||= +++..-++ . ...+..|..+... T Consensus 55 ~~~~~is~P~~~A~~l~~L----------~~~~g~~VLeIGsGtGY-~tAlla~l---~--------~~v~~ve~~~~~~ 112 (210) T 3lbf_A 55 GQGQTISQPYMVARMTELL----------ELTPQSRVLEIGTGSGY-QTAILAHL---V--------QHVCSVERIKGLQ 112 (210) T ss_dssp TTSCEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSH-HHHHHHHH---S--------SEEEEEESCHHHH T ss_pred CCCCEECCCHHHHHHHHHC----------CCCCCCEEEEECCCHHH-HHHHHHHH---H--------CEECCCCCCHHHH T ss_conf 8981754436747678756----------56899879996784069-99999986---2--------8325454222899 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 9999998980887533456666823475457999866418999816856 Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674) Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674) ..++.++--.+... ..+..||-.. ..-....||.|+.+-.. T Consensus 113 ~~a~~~~~~~~~~n-------v~~~~gdg~~-g~~~~~pyD~Iiv~~a~ 153 (210) T 3lbf_A 113 WQARRRLKNLDLHN-------VSTRHGDGWQ-GWQARAPFDAIIVTAAP 153 (210) T ss_dssp HHHHHHHHHTTCCS-------EEEEESCGGG-CCGGGCCEEEEEESSBC T ss_pred HHHHHHHHHHCCCC-------CEEEECCCCC-CCCCCCCCCEEEEEECC T ss_conf 99999988626667-------1799857776-77556980379996412 No 252 >2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B* Probab=20.66 E-value=33 Score=12.90 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=14.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH Q ss_conf 76114438999999999862276657536817 Q gi|254780836|r 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 (674) Q Consensus 150 v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR 181 (674) |....+..+-|-||.-+++. .|..|||- T Consensus 98 V~~~~f~~~g~~ll~~l~~~----lg~~~t~e 125 (146) T 2aa1_B 98 VDPDNFKLLADCLTIVVAAR----FGSAFTGE 125 (146) T ss_dssp CCTHHHHHHHHHHHHHHHHH----HGGGSCHH T ss_pred CCHHHHHHHHHHHHHHHHHH----CCCCCCHH T ss_conf 98389999999999999987----67307899 Done!