Query         gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 674
No_of_seqs    263 out of 1074
Neff          5.3 
Searched_HMMs 23785
Date          Tue May 31 21:25:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780836.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3khk_A Type I restriction-modi 100.0       0       0  703.3  33.8  461    4-494     6-527 (544)
  2 3lkd_A Type I restriction-modi 100.0       0       0  698.8  26.1  435    1-473     1-462 (542)
  3 2ar0_A M.ecoki, type I restric 100.0       0       0  630.7  22.5  390    4-463     1-414 (541)
  4 2okc_A Type I restriction enzy 100.0       0       0  597.2  26.2  406    1-482     2-417 (445)
  5 2f8l_A Hypothetical protein LM 100.0       0       0  342.8  23.9  287  102-433    39-326 (344)
  6 2ih2_A Modification methylase  100.0 2.4E-38   1E-42  268.3   9.8  208  161-415     5-213 (421)
  7 3evz_A Methyltransferase; NYSG  99.6 1.1E-13 4.7E-18  107.4  14.4  101  175-303    35-135 (230)
  8 1wy7_A Hypothetical protein PH  99.4 7.7E-13 3.2E-17  101.9   7.0  103  172-304    23-125 (207)
  9 3ldu_A Putative methylase; str  99.3 1.7E-11 7.1E-16   93.1   8.1   91  206-304   196-314 (385)
 10 1ne2_A Hypothetical protein TA  99.2 8.5E-10 3.6E-14   82.0  13.2  163  174-412    27-197 (200)
 11 2b3t_A Protein methyltransfera  99.2   3E-10 1.3E-14   85.0  10.4  166  177-386    88-255 (276)
 12 3k0b_A Predicted N6-adenine-sp  99.1 1.6E-10 6.6E-15   86.8   8.4   91  206-304   202-320 (393)
 13 2ozv_A Hypothetical protein AT  99.1 1.7E-10 7.2E-15   86.5   6.4  131  203-361    34-171 (260)
 14 1dus_A MJ0882; hypothetical pr  98.9   1E-08 4.2E-13   75.0  10.1  129  173-362    28-159 (194)
 15 2pjd_A Ribosomal RNA small sub  98.8 2.7E-08 1.1E-12   72.2  10.2  123  182-362   183-305 (343)
 16 3lpm_A Putative methyltransfer  98.8 1.3E-08 5.5E-13   74.3   7.2  143  206-386    50-193 (259)
 17 3dmg_A Probable ribosomal RNA   98.7 1.1E-07 4.6E-12   68.2  10.6  129  182-362   214-342 (381)
 18 1nv8_A HEMK protein; class I a  98.7   2E-08 8.3E-13   73.1   6.7  147  177-360   101-249 (284)
 19 3gdh_A Trimethylguanosine synt  98.7 9.6E-09   4E-13   75.1   4.2   96  179-303    61-156 (241)
 20 2qm3_A Predicted methyltransfe  98.6 4.1E-07 1.7E-11   64.5  10.8  101  177-303   152-253 (373)
 21 2as0_A Hypothetical protein PH  98.5 2.5E-07 1.1E-11   65.9   7.9  104  171-303   195-301 (396)
 22 1ws6_A Methyltransferase; stru  98.5 7.7E-08 3.3E-12   69.2   4.5  100  177-304    21-123 (171)
 23 3a27_A TYW2, uncharacterized p  98.5 3.7E-07 1.6E-11   64.7   7.8   97  175-302    99-197 (272)
 24 3grz_A L11 mtase, ribosomal pr  98.5 7.9E-07 3.3E-11   62.6   9.2   96  174-302    41-136 (205)
 25 2esr_A Methyltransferase; stru  98.5 8.6E-08 3.6E-12   68.9   3.7  103  175-303    10-112 (177)
 26 2h00_A Methyltransferase 10 do  98.4 6.7E-07 2.8E-11   63.1   8.1   82  205-302    65-151 (254)
 27 2yx1_A Hypothetical protein MJ  98.4 4.8E-07   2E-11   64.1   6.2   93  175-302   175-269 (336)
 28 2frn_A Hypothetical protein PH  98.4 2.1E-06 8.8E-11   59.9   9.4   96  176-302   106-203 (278)
 29 3c0k_A UPF0064 protein YCCW; P  98.3 4.9E-06 2.1E-10   57.5  10.2  104  170-302   198-304 (396)
 30 3lec_A NADB-rossmann superfami  98.3   3E-05 1.3E-09   52.3  12.7  148  177-399     7-156 (230)
 31 2fpo_A Methylase YHHF; structu  98.2 1.2E-06 5.2E-11   61.4   5.6   99  178-303    36-134 (202)
 32 1l3i_A Precorrin-6Y methyltran  98.2 9.1E-06 3.8E-10   55.7   9.9  141  174-386    10-152 (192)
 33 3e05_A Precorrin-6Y C5,15-meth  98.2 5.2E-05 2.2E-09   50.8  13.3  148  173-391    18-165 (204)
 34 3eey_A Putative rRNA methylase  98.2 8.2E-05 3.4E-09   49.5  14.3  116  206-360    23-139 (197)
 35 1wxx_A TT1595, hypothetical pr  98.2 5.2E-06 2.2E-10   57.3   8.1  100  171-303   189-291 (382)
 36 3hm2_A Precorrin-6Y C5,15-meth  98.2 6.9E-05 2.9E-09   49.9  13.8  170  171-412     2-177 (178)
 37 2fhp_A Methylase, putative; al  98.2 1.6E-06 6.6E-11   60.7   5.2  101  177-303    25-128 (187)
 38 3mti_A RRNA methylase; SAM-dep  98.2 5.5E-05 2.3E-09   50.6  13.0  159  205-413    22-184 (185)
 39 2igt_A SAM dependent methyltra  98.2 4.4E-06 1.8E-10   57.8   7.1  107  170-302   127-237 (332)
 40 2b78_A Hypothetical protein SM  98.1 1.6E-05 6.7E-10   54.1   9.5  104  170-301   189-295 (385)
 41 3mb5_A SAM-dependent methyltra  98.1 4.8E-05   2E-09   51.0  10.9  122  175-361    74-195 (255)
 42 3kr9_A SAM-dependent methyltra  98.0 6.6E-05 2.8E-09   50.1  10.7  120  207-387    17-136 (225)
 43 3g5t_A Trans-aconitate 3-methy  98.0 8.5E-05 3.6E-09   49.4  11.1  126  176-360    19-149 (299)
 44 2nxc_A L11 mtase, ribosomal pr  98.0 7.5E-06 3.1E-10   56.2   5.6  136  174-386   101-236 (254)
 45 2yvl_A TRMI protein, hypotheti  98.0 9.7E-05 4.1E-09   49.0  11.2  123  172-361    69-191 (248)
 46 1o54_A SAM-dependent O-methylt  98.0 5.9E-05 2.5E-09   50.4  10.0  143  173-388    91-233 (277)
 47 1o9g_A RRNA methyltransferase;  98.0 1.4E-05 5.8E-10   54.5   6.3   72  180-262    29-100 (250)
 48 1xxl_A YCGJ protein; structura  97.9 0.00012   5E-09   48.4   9.8  119  180-360     6-124 (239)
 49 1yb2_A Hypothetical protein TA  97.9 9.3E-05 3.9E-09   49.1   9.2  122  175-361    91-212 (275)
 50 2pwy_A TRNA (adenine-N(1)-)-me  97.8 0.00028 1.2E-08   46.0  10.6  144  173-388    75-218 (258)
 51 1ri5_A MRNA capping enzyme; me  97.7 0.00018 7.5E-09   47.3   8.2  110  207-361    66-175 (298)
 52 1i9g_A Hypothetical protein RV  97.7 0.00086 3.6E-08   42.8  11.4  125  172-361    77-204 (280)
 53 1vl5_A Unknown conserved prote  97.6 0.00032 1.4E-08   45.6   8.4  122  176-360    19-140 (260)
 54 3dlc_A Putative S-adenosyl-L-m  97.6 0.00098 4.1E-08   42.4  10.7  103  208-360    46-148 (219)
 55 3dh0_A SAM dependent methyltra  97.5 0.00026 1.1E-08   46.2   7.2  142  205-395    37-183 (219)
 56 3bt7_A TRNA (uracil-5-)-methyl  97.5 0.00092 3.9E-08   42.6  10.1  163  174-412   188-368 (369)
 57 3hnr_A Probable methyltransfer  97.5 0.00049   2E-08   44.4   8.4   99  207-360    47-145 (220)
 58 2yxd_A Probable cobalt-precorr  97.5 8.1E-05 3.4E-09   49.5   4.1   93  175-298    15-107 (183)
 59 3gnl_A Uncharacterized protein  97.5  0.0015 6.5E-08   41.1  10.5  119  207-387    23-142 (244)
 60 2ift_A Putative methylase HI07  97.5  0.0002 8.5E-09   46.9   5.8   81  208-304    56-138 (201)
 61 2b25_A Hypothetical protein; s  97.4   0.002 8.3E-08   40.4  10.6  132  173-361    84-220 (336)
 62 1dl5_A Protein-L-isoaspartate   97.4 0.00044 1.8E-08   44.7   7.1   98  175-299    55-152 (317)
 63 1ve3_A Hypothetical protein PH  97.4  0.0024   1E-07   39.9  10.8  103  207-360    40-142 (227)
 64 2yqz_A Hypothetical protein TT  97.4  0.0009 3.8E-08   42.7   8.4  102  206-360    40-141 (263)
 65 3gu3_A Methyltransferase; alph  97.4 0.00099 4.2E-08   42.4   8.5  126  177-362     3-128 (284)
 66 1nkv_A Hypothetical protein YJ  97.3  0.0019 8.1E-08   40.5   9.7   94  178-301    20-113 (256)
 67 1im8_A YECO; methyltransferase  97.3  0.0047   2E-07   38.0  11.6  141  154-359    25-165 (244)
 68 3ocj_A Putative exported prote  97.3 0.00061 2.6E-08   43.8   6.9  100  178-302    99-198 (305)
 69 2b9e_A NOL1/NOP2/SUN domain fa  97.3  0.0043 1.8E-07   38.2  11.0  103  175-303    82-186 (309)
 70 3fzg_A 16S rRNA methylase; met  97.3  0.0014   6E-08   41.4   8.4  142  206-400    50-194 (200)
 71 3bus_A REBM, methyltransferase  97.3  0.0016 6.7E-08   41.1   8.5  105  205-359    61-165 (273)
 72 3bgv_A MRNA CAP guanine-N7 met  97.2  0.0026 1.1E-07   39.6   9.2   85  205-300    34-123 (313)
 73 3lcc_A Putative methyl chlorid  97.2   0.012 5.1E-07   35.3  12.6  127  207-387    68-200 (235)
 74 2o57_A Putative sarcosine dime  97.2  0.0023 9.6E-08   40.0   8.5  105  205-359    82-186 (297)
 75 3lcv_B Sisomicin-gentamicin re  97.2  0.0023 9.9E-08   40.0   8.5   76  206-301   133-208 (281)
 76 1uwv_A 23S rRNA (uracil-5-)-me  97.1  0.0016 6.5E-08   41.1   7.5  168  174-414   260-433 (433)
 77 3e8s_A Putative SAM dependent   97.1   0.004 1.7E-07   38.5   9.3  101  207-362    54-154 (227)
 78 3kkz_A Uncharacterized protein  97.1  0.0015 6.2E-08   41.3   6.8   94  181-301    31-124 (267)
 79 3ll7_A Putative methyltransfer  97.1 0.00016 6.9E-09   47.5   1.8   79  207-302    95-174 (410)
 80 2p35_A Trans-aconitate 2-methy  97.0  0.0031 1.3E-07   39.2   8.0  116  180-362    19-134 (259)
 81 2p8j_A S-adenosylmethionine-de  96.9  0.0028 1.2E-07   39.5   7.3  104  206-359    24-127 (209)
 82 3f4k_A Putative methyltransfer  96.9  0.0039 1.6E-07   38.5   7.9  121  181-361    31-151 (257)
 83 1wzn_A SAM-dependent methyltra  96.9  0.0049   2E-07   37.9   8.4  106  203-360    39-145 (252)
 84 1pjz_A Thiopurine S-methyltran  96.9  0.0048   2E-07   38.0   8.3  132  176-360     4-140 (203)
 85 3dtn_A Putative methyltransfer  96.9  0.0098 4.1E-07   35.9   9.9  133  155-359    13-147 (234)
 86 3m33_A Uncharacterized protein  96.9   0.015 6.3E-07   34.7  10.8  146  157-386     9-159 (226)
 87 1vlm_A SAM-dependent methyltra  96.9  0.0033 1.4E-07   39.0   7.5  128  151-361     9-140 (219)
 88 3bkx_A SAM-dependent methyltra  96.9  0.0072   3E-07   36.8   9.1   80  205-299    43-130 (275)
 89 3m70_A Tellurite resistance pr  96.9   0.008 3.4E-07   36.5   9.2  102  208-361   123-224 (286)
 90 2pxx_A Uncharacterized protein  96.9   0.025   1E-06   33.3  11.7   74  207-301    44-117 (215)
 91 2dul_A N(2),N(2)-dimethylguano  96.9   0.017 6.9E-07   34.4  10.7  109  172-304    22-143 (378)
 92 3m6w_A RRNA methylase; rRNA me  96.9  0.0067 2.8E-07   37.0   8.6  166  175-387    81-251 (464)
 93 1g8a_A Fibrillarin-like PRE-rR  96.8   0.026 1.1E-06   33.2  12.2  169  178-411    51-225 (227)
 94 3mgg_A Methyltransferase; NYSG  96.8   0.013 5.7E-07   35.0  10.0  105  206-360    38-142 (276)
 95 1eg2_A Modification methylase   96.8  0.0026 1.1E-07   39.6   6.1   28  276-303    42-70  (319)
 96 1zq9_A Probable dimethyladenos  96.8  0.0024   1E-07   39.8   5.8  104  170-304     2-106 (285)
 97 3ajd_A Putative methyltransfer  96.8   0.026 1.1E-06   33.1  11.1  177  175-399    63-244 (274)
 98 1xva_A Glycine N-methyltransfe  96.8  0.0013 5.6E-08   41.5   4.4  127  181-358    42-172 (292)
 99 1y8c_A S-adenosylmethionine-de  96.7  0.0046 1.9E-07   38.0   7.1  121  181-360    21-142 (246)
100 1g60_A Adenine-specific methyl  96.7  0.0017 7.1E-08   40.9   4.9  111  275-414     6-126 (260)
101 2fk8_A Methoxy mycolic acid sy  96.7   0.028 1.2E-06   32.9  10.9  104  203-358    88-192 (318)
102 3ege_A Putative methyltransfer  96.7   0.002 8.4E-08   40.4   5.0  115  178-361    18-132 (261)
103 3l8d_A Methyltransferase; stru  96.7   0.005 2.1E-07   37.8   6.9  100  207-361    55-154 (242)
104 2gb4_A Thiopurine S-methyltran  96.7   0.035 1.5E-06   32.3  14.1  208  159-413    33-252 (252)
105 1qam_A ERMC' methyltransferase  96.6   0.004 1.7E-07   38.4   6.2  172  170-414     4-180 (244)
106 2h1r_A Dimethyladenosine trans  96.6  0.0062 2.6E-07   37.2   7.1   99  174-304    20-119 (299)
107 1sqg_A SUN protein, FMU protei  96.6  0.0091 3.8E-07   36.1   7.9  166  177-388   227-397 (429)
108 3bxo_A N,N-dimethyltransferase  96.6  0.0023 9.5E-08   40.1   4.7   97  207-358    42-139 (239)
109 1nt2_A Fibrillarin-like PRE-rR  96.6   0.023 9.5E-07   33.5   9.8  156  178-395    36-197 (210)
110 2frx_A Hypothetical protein YE  96.6  0.0084 3.5E-07   36.3   7.6  173  174-389    94-271 (479)
111 2avn_A Ubiquinone/menaquinone   96.5  0.0043 1.8E-07   38.2   5.8   97  207-361    56-153 (260)
112 1ixk_A Methyltransferase; open  96.5   0.011 4.8E-07   35.5   7.8  164  175-387    98-267 (315)
113 1boo_A Protein (N-4 cytosine-s  96.5  0.0034 1.4E-07   38.9   5.1   30  275-304    16-46  (323)
114 2i6g_A Putative methyltransfer  96.5   0.023 9.5E-07   33.5   9.1  117  179-360    19-135 (199)
115 2zig_A TTHA0409, putative modi  96.5  0.0055 2.3E-07   37.5   5.9   30  275-304    23-53  (297)
116 3fpf_A Mtnas, putative unchara  96.5   0.022 9.2E-07   33.6   9.0  148  181-401   108-257 (298)
117 2yxl_A PH0851 protein, 450AA l  96.4   0.049 2.1E-06   31.4  11.9  167  177-388   240-412 (450)
118 2aot_A HMT, histamine N-methyl  96.4   0.023 9.7E-07   33.5   9.0  149  159-361    15-173 (292)
119 1nw3_A Histone methyltransfera  96.4  0.0058 2.4E-07   37.4   5.7   94  179-298   139-241 (416)
120 3hem_A Cyclopropane-fatty-acyl  96.4   0.053 2.2E-06   31.1  12.9   78  203-301    70-147 (302)
121 2ipx_A RRNA 2'-O-methyltransfe  96.3   0.055 2.3E-06   31.0  10.7  123  179-360    56-182 (233)
122 3ccf_A Cyclopropane-fatty-acyl  96.3  0.0082 3.4E-07   36.4   6.2  102  203-362    55-156 (279)
123 3frh_A 16S rRNA methylase; met  96.2   0.008 3.4E-07   36.5   5.8   70  207-299   107-176 (253)
124 3cgg_A SAM-dependent methyltra  96.2   0.027 1.1E-06   33.1   8.4   99  207-360    48-147 (195)
125 2gs9_A Hypothetical protein TT  96.2   0.011 4.6E-07   35.6   6.3   96  206-360    37-132 (211)
126 3e23_A Uncharacterized protein  96.2   0.066 2.8E-06   30.5  11.3  123  207-386    45-173 (211)
127 3i9f_A Putative type 11 methyl  96.2  0.0085 3.6E-07   36.3   5.6   94  207-360    19-112 (170)
128 3gru_A Dimethyladenosine trans  96.1   0.014 5.7E-07   35.0   6.5  103  170-304    24-127 (295)
129 3g5l_A Putative S-adenosylmeth  96.1  0.0045 1.9E-07   38.1   4.0  104  205-362    44-147 (253)
130 2jjq_A Uncharacterized RNA met  96.1   0.017 7.1E-07   34.4   6.8   95  174-300   267-362 (425)
131 3ftd_A Dimethyladenosine trans  96.0   0.016 6.7E-07   34.5   6.4  173  171-414     6-184 (249)
132 1jg1_A PIMT;, protein-L-isoasp  96.0   0.049   2E-06   31.4   8.7   99  174-301    70-168 (235)
133 1yzh_A TRNA (guanine-N(7)-)-me  95.9   0.028 1.2E-06   32.9   7.4  118  208-366    44-162 (214)
134 2r6z_A UPF0341 protein in RSP   95.9 0.00081 3.4E-08   43.0  -0.5   85  206-303    84-173 (258)
135 3fut_A Dimethyladenosine trans  95.9   0.015 6.2E-07   34.8   5.8  182  161-415    12-202 (271)
136 2i62_A Nicotinamide N-methyltr  95.9   0.084 3.5E-06   29.8   9.7  174  202-416    53-262 (265)
137 3bkw_A MLL3908 protein, S-aden  95.8  0.0091 3.8E-07   36.1   4.5  104  206-366    44-149 (243)
138 1yub_A Ermam, rRNA methyltrans  95.8   0.011 4.6E-07   35.6   4.9  103  170-304     3-106 (245)
139 3id6_C Fibrillarin-like rRNA/T  95.8   0.097 4.1E-06   29.4  14.6  162  178-395    54-218 (232)
140 1u2z_A Histone-lysine N-methyl  95.7   0.032 1.3E-06   32.6   7.0   47  204-260   241-287 (433)
141 3m4x_A NOL1/NOP2/SUN family pr  95.7   0.081 3.4E-06   29.9   9.0  164  174-385    84-253 (456)
142 2ex4_A Adrenal gland protein A  95.6    0.11 4.7E-06   29.0  14.2  151  205-410    79-240 (241)
143 1xtp_A LMAJ004091AAA; SGPP, st  95.5    0.12 5.1E-06   28.8  11.5  142  206-399    94-247 (254)
144 1vbf_A 231AA long hypothetical  95.4   0.044 1.8E-06   31.7   6.7   93  175-299    50-142 (231)
145 1fbn_A MJ fibrillarin homologu  95.4   0.092 3.9E-06   29.5   8.3  137  204-395    73-215 (230)
146 1zx0_A Guanidinoacetate N-meth  95.2   0.026 1.1E-06   33.1   5.1  121  181-358    47-168 (236)
147 1p91_A Ribosomal RNA large sub  95.2   0.041 1.7E-06   31.9   6.1   88  181-298    68-155 (269)
148 3jwg_A HEN1, methyltransferase  95.1   0.023 9.5E-07   33.5   4.4   83  206-301    30-112 (219)
149 3ofk_A Nodulation protein S; N  95.0   0.046 1.9E-06   31.5   5.9  100  206-360    52-154 (216)
150 2kw5_A SLR1183 protein; struct  94.8     0.2 8.6E-06   27.3  13.6  155  208-417    32-197 (202)
151 3d2l_A SAM-dependent methyltra  94.8   0.044 1.8E-06   31.7   5.2  102  207-360    35-137 (243)
152 3cc8_A Putative methyltransfer  94.8   0.046 1.9E-06   31.5   5.3   99  206-362    33-132 (230)
153 3jwh_A HEN1; methyltransferase  94.7   0.028 1.2E-06   32.9   4.1   83  206-301    30-112 (217)
154 3h2b_A SAM-dependent methyltra  94.7   0.023 9.8E-07   33.4   3.6  139  180-387    30-175 (203)
155 3ou2_A SAM-dependent methyltra  94.6   0.095   4E-06   29.5   6.7   96  207-360    48-146 (218)
156 2vdv_E TRNA (guanine-N(7)-)-me  94.6    0.15 6.3E-06   28.2   7.6  121  207-362    51-175 (246)
157 2r3s_A Uncharacterized protein  94.5    0.24 9.9E-06   26.9  15.0  143  206-397   166-327 (335)
158 2a14_A Indolethylamine N-methy  94.5    0.24   1E-05   26.8  13.6   46  205-261    55-100 (263)
159 2vdw_A Vaccinia virus capping   94.4   0.038 1.6E-06   32.0   4.2  117  206-362    49-172 (302)
160 1i1n_A Protein-L-isoaspartate   94.4    0.25 1.1E-05   26.7   8.5  106  175-301    55-161 (226)
161 1r18_A Protein-L-isoaspartate(  94.3    0.17 6.9E-06   27.9   7.3  109  174-300    61-172 (227)
162 3iv6_A Putative Zn-dependent a  94.2   0.031 1.3E-06   32.7   3.4   74  206-301    46-120 (261)
163 3dxy_A TRNA (guanine-N(7)-)-me  94.1    0.16 6.9E-06   27.9   6.9  115  208-365    37-155 (218)
164 2p7i_A Hypothetical protein; p  93.8   0.047   2E-06   31.5   3.7   66  208-298    45-110 (250)
165 3g2m_A PCZA361.24; SAM-depende  93.8   0.098 4.1E-06   29.4   5.3  106  208-361    85-191 (299)
166 1or8_A Protein arginine N-meth  93.5    0.18 7.4E-06   27.7   6.2   74  207-299    59-132 (340)
167 1g6q_1 HnRNP arginine N-methyl  93.1    0.22 9.4E-06   27.0   6.2   78  207-303    40-117 (328)
168 3mcz_A O-methyltransferase; ad  93.0    0.26 1.1E-05   26.6   6.4   80  205-301   179-258 (352)
169 2fca_A TRNA (guanine-N(7)-)-me  92.8    0.47   2E-05   25.0  10.4  136  208-392    41-177 (213)
170 2yxe_A Protein-L-isoaspartate   92.6     0.5 2.1E-05   24.8   8.8   99  175-301    57-156 (215)
171 2fyt_A Protein arginine N-meth  92.6    0.33 1.4E-05   25.9   6.5   76  207-303    66-143 (340)
172 3dli_A Methyltransferase; PSI-  92.5    0.03 1.3E-06   32.7   1.1   97  207-361    43-141 (240)
173 3dp7_A SAM-dependent methyltra  92.5     0.5 2.1E-05   24.7  12.6  155  207-414   181-356 (363)
174 1x19_A CRTF-related protein; m  92.1    0.56 2.4E-05   24.4   9.8   73  206-298   191-263 (359)
175 2oyr_A UPF0341 protein YHIQ; a  91.7   0.051 2.2E-06   31.2   1.5   89  203-303    86-176 (258)
176 3g07_A 7SK snRNA methylphospha  90.7    0.16 6.6E-06   28.1   3.2   45  207-261    48-92  (292)
177 3b3f_A Histone-arginine methyl  90.5    0.65 2.7E-05   24.0   6.2   73  207-299    48-120 (341)
178 3p2e_A 16S rRNA methylase; met  89.9    0.33 1.4E-05   25.9   4.3   47  206-262    25-71  (225)
179 3b3j_A Histone-arginine methyl  89.8    0.75 3.2E-05   23.6   6.0   72  207-300   160-233 (480)
180 3ckk_A TRNA (guanine-N(7)-)-me  89.0       1 4.2E-05   22.8   6.2  136  208-390    49-190 (235)
181 1qzz_A RDMB, aclacinomycin-10-  88.6     1.1 4.7E-05   22.5   9.5  141  206-396   183-342 (374)
182 1kpg_A CFA synthase;, cyclopro  88.5     1.1 4.8E-05   22.4  12.5  105  203-358    62-166 (287)
183 2ip2_A Probable phenazine-spec  87.5     1.3 5.5E-05   22.0  10.4  140  206-395   168-324 (334)
184 2pbf_A Protein-L-isoaspartate   87.4     1.3 5.6E-05   22.0   7.1  109  175-299    58-170 (227)
185 3ggd_A SAM-dependent methyltra  87.3     1.3 5.6E-05   22.0   8.1   42  206-259    57-98  (245)
186 3gjy_A Spermidine synthase; AP  83.2     2.1 8.8E-05   20.7   6.8  108  206-358    90-198 (317)
187 1zkd_A DUF185; X-RAY, NESG, RP  82.0     2.3 9.8E-05   20.4   6.0  111  173-301    47-159 (387)
188 3i53_A O-methyltransferase; CO  79.1     2.9 0.00012   19.8   8.1  132  206-387   170-314 (332)
189 2pt6_A Spermidine synthase; tr  77.0     3.3 0.00014   19.4   5.3  146  208-406   119-264 (321)
190 2b2c_A Spermidine synthase; be  76.7     3.3 0.00014   19.4   4.6   82  207-301   110-191 (314)
191 3adn_A Spermidine synthase; am  75.2     3.7 0.00016   19.1   5.8  119  207-367    85-204 (294)
192 1tw3_A COMT, carminomycin 4-O-  74.6     3.8 0.00016   19.0  13.8  152  206-410   184-353 (360)
193 1qyr_A KSGA, high level kasuga  74.2     3.9 0.00016   18.9   5.2   96  177-304     3-103 (252)
194 1inl_A Spermidine synthase; be  74.2     3.5 0.00015   19.3   4.2  119  208-367    93-211 (296)
195 3c3p_A Methyltransferase; NP_9  73.9     2.7 0.00011   20.0   3.5   92  181-298    42-133 (210)
196 3dr5_A Putative O-methyltransf  73.9       4 0.00017   18.9  13.3  150  206-416    57-216 (221)
197 2yui_A Anamorsin; cytokine-ind  72.3     4.3 0.00018   18.6   7.6   84  275-390    50-135 (182)
198 3ndi_A Methyltransferase; S-ad  69.1     5.1 0.00021   18.2   4.7  101  206-361   108-209 (416)
199 2gpy_A O-methyltransferase; st  65.8     5.9 0.00025   17.8   5.8   93  180-298    39-133 (233)
200 2i7c_A Spermidine synthase; tr  64.3     6.3 0.00026   17.6   6.9  145  208-406    81-226 (283)
201 3gmi_A UPF0348 protein MJ0951;  63.0     6.6 0.00028   17.4   4.6   37  212-254   124-160 (357)
202 3bwc_A Spermidine synthase; SA  61.7       7 0.00029   17.3   4.5  131  208-384    98-230 (304)
203 1g55_A DNA cytosine methyltran  61.3     4.3 0.00018   18.7   2.5   74  207-301     3-78  (343)
204 2c7p_A Modification methylase   59.5     7.6 0.00032   17.0   5.9   77  200-301     5-81  (327)
205 3duw_A OMT, O-methyltransferas  57.7     8.2 0.00034   16.8   8.0  145  207-404    60-217 (223)
206 1uir_A Polyamine aminopropyltr  55.3     8.9 0.00037   16.6   4.7  107  207-349    79-188 (314)
207 2b0t_A NADP isocitrate dehydro  54.9     9.1 0.00038   16.5   3.6   24  361-384   569-593 (738)
208 1itw_A Isocitrate dehydrogenas  52.4     9.9 0.00042   16.3   3.6   27  359-385   571-598 (741)
209 2zfu_A Nucleomethylin, cerebra  52.3      10 0.00042   16.3  12.8  116  206-398    68-183 (215)
210 3d1k_B Hemoglobin subunit beta  51.7      10 0.00043   16.2   4.5   55  121-182    72-126 (146)
211 2g72_A Phenylethanolamine N-me  50.7      11 0.00044   16.1   6.4  144  203-386    69-248 (289)
212 3dmp_A Uracil phosphoribosyltr  50.7     6.7 0.00028   17.4   2.0   28  207-234   132-159 (217)
213 3ooo_A Proline dipeptidase; st  46.9      12 0.00051   15.7   3.1   51  375-431     6-63  (132)
214 2q3b_A Cysteine synthase A; py  45.5      10 0.00042   16.3   2.3   32  211-248   177-208 (313)
215 1iy9_A Spermidine synthase; ro  43.9      13 0.00056   15.4   7.7  144  208-406    78-223 (275)
216 1dct_A Protein (modification m  42.1      14  0.0006   15.3   4.9   68  208-301     2-71  (324)
217 3htx_A HEN1; HEN1, small RNA m  40.4      15 0.00064   15.1   6.5   19  582-600   789-807 (950)
218 1xtt_A Probable uracil phospho  39.4      10 0.00044   16.2   1.6   25  208-232   137-161 (216)
219 3i7m_A XAA-Pro dipeptidase; st  38.1      16 0.00069   14.9   2.8   57  375-436     7-69  (140)
220 3o5v_A X-Pro dipeptidase; crea  37.3      17 0.00071   14.8   3.2   50  375-430     6-62  (132)
221 2dpm_A M.dpnii 1, protein (ade  37.1      17  0.0007   14.8   2.3   11  292-302   188-198 (284)
222 2o07_A Spermidine synthase; st  36.9      17 0.00072   14.7   4.8  130  208-383    98-228 (304)
223 3gwz_A MMCR; methyltransferase  36.0      18 0.00074   14.7  10.7   80  206-306   203-282 (369)
224 3opn_A Putative hemolysin; str  35.7      18 0.00075   14.6   3.4   98  176-302    15-114 (232)
225 1o5o_A Uracil phosphoribosyltr  35.6      17 0.00071   14.8   2.2   26  207-232   139-164 (221)
226 1i5e_A Uracil phosphoribosyltr  35.3      17 0.00072   14.7   2.2   26  207-232   127-152 (209)
227 2g1p_A DNA adenine methylase;   34.2      17 0.00072   14.7   2.0   10  293-302   176-185 (278)
228 2qfm_A Spermine synthase; sper  33.7      14  0.0006   15.3   1.6   83  207-300   190-276 (364)
229 3c2q_A Uncharacterized conserv  33.7      19 0.00081   14.4   2.6   50  351-405   133-189 (345)
230 2cy7_A Cysteine protease APG4B  33.3      19 0.00082   14.4   4.6   50  132-191   110-159 (396)
231 1v9s_A Uracil phosphoribosyltr  32.7      20 0.00084   14.3   2.2   26  207-232   126-151 (208)
232 1s96_A Guanylate kinase, GMP k  32.6      20 0.00084   14.3   2.9   15  370-384    25-39  (219)
233 1u0i_A IAAL-E3; coiled-coil, d  31.8      18 0.00075   14.6   1.8   16  657-672     2-17  (26)
234 3c3y_A Pfomt, O-methyltransfer  31.3      21 0.00088   14.2  12.3  156  175-394    50-225 (237)
235 1z7w_A Cysteine synthase; tran  30.5      22 0.00091   14.1   2.3   29  213-247   179-207 (322)
236 3ktb_A Arsenical resistance op  30.5      13 0.00053   15.6   0.8   11  207-217     7-19  (106)
237 1bd3_D Uprtase, uracil phospho  30.3      22 0.00092   14.1   2.9   29  207-235   159-187 (243)
238 3ejx_A DAP epimerase, diaminop  30.0      10 0.00043   16.2   0.3   21  367-387   251-271 (317)
239 2ehj_A Uracil phosphoribosyltr  30.0      19 0.00078   14.5   1.6   27  207-233   126-152 (208)
240 2e55_A Uracil phosphoribosyltr  29.3      20 0.00085   14.3   1.7   25  207-231   124-148 (208)
241 3e9c_A ZGC:56074; histidine ph  27.4      24   0.001   13.7   3.4   68  352-432   174-251 (265)
242 1tdj_A Biosynthetic threonine   27.4      24   0.001   13.7   2.3   35  207-248   181-215 (514)
243 1ve1_A O-acetylserine sulfhydr  25.8      26  0.0011   13.5   6.9   76  158-248   123-202 (304)
244 3mbr_X Glutamine cyclotransfer  25.1     6.8 0.00029   17.3  -1.3   65  361-430    29-95  (243)
245 1o58_A O-acetylserine sulfhydr  24.4      28  0.0012   13.4   2.6   32  212-248   175-206 (303)
246 3il0_A Aminopeptidase P; XAA-P  23.6      29  0.0012   13.3   4.5   52  375-433     9-63  (131)
247 3he4_A Synzip6; heterodimeric   22.6      30  0.0013   13.2   2.1   20  638-657    10-29  (56)
248 3dwg_A Cysteine synthase B; su  22.2      31  0.0013   13.1   2.3   29  212-246   183-211 (325)
249 3bu2_A Putative tRNA-binding p  22.0      31  0.0013   13.1   4.5   60  396-458     2-78  (199)
250 1yf3_A DNA adenine methylase;   22.0      18 0.00076   14.6   0.4   11  292-302   165-175 (259)
251 3lbf_A Protein-L-isoaspartate   21.7      31  0.0013   13.0   9.0   99  173-301    55-153 (210)
252 2aa1_B Hemoglobin beta-C chain  20.7      33  0.0014   12.9   4.1   28  150-181    98-125 (146)

No 1  
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=100.00  E-value=0  Score=703.25  Aligned_cols=461  Identities=20%  Similarity=0.343  Sum_probs=342.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC---------HHHH--
Q ss_conf             10178889999999998740688834308723054899989674123399999999720246889---------6787--
Q gi|254780836|r    4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID---------LESF--   72 (674)
Q Consensus         4 ~~~t~s~L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~---------~~~~--   72 (674)
                      .+..+++|+++||++||.|||.|++++|++|||||+|||||||+|+++++++.+.+.........         .+.+  
T Consensus         6 ~~~~~~~L~~~lW~~ad~LRg~~d~~~Yk~yIL~llFlK~lsd~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~   85 (544)
T 3khk_A            6 EQQFLNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNIYYLPREDYDSDEAYQQ   85 (544)
T ss_dssp             -CCSHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCSSCCCGGGCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
T ss_conf             69999999999999999984877778808702157879873185799999999886215522343321220000578888


Q ss_pred             ----------HHHCCCCCCCCCCCCHHHHHHH-HH--HHHHHHHHHHHCH-------HHHHHHHHCC-----HHHHHH--
Q ss_conf             ----------6533896103680368861345-58--9999999975299-------9899987177-----235775--
Q gi|254780836|r   73 ----------VKVAGYSFYNTSEYSLSTLGST-NT--RNNLESYIASFSD-------NAKAIFEDFD-----FSSTIA--  125 (674)
Q Consensus        73 ----------~~~~g~~F~n~s~~~~~~l~~~-~~--~~nl~~yi~gfS~-------nv~dI~~~f~-----f~~~i~--  125 (674)
                                .......|++++.++|..+... +.  .........+.+.       .+..+|+.++     +...+.  
T Consensus        86 ~~~~~~~~~~~~~~~~~f~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~L~~v~~~~  165 (544)
T 3khk_A           86 AIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQDEQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRI  165 (544)
T ss_dssp             HHHHHHTCTHHHHTTTCCCCCTTTCHHHHHHCCSSCC----------------CHHHHHHHHHHHHHHHCGGGSSCSCCS
T ss_pred             HHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf             88765400023314664336741356888632303320234432201110144689999999999987686765033211


Q ss_pred             --HHHHCCHHHHHHHHHCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             --4442362899998740245673--------337611443899999999986227665753681799999999731784
Q gi|254780836|r  126 --RLEKAGLLYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD  195 (674)
Q Consensus       126 --~L~~~~~L~~vI~~F~~idL~p--------~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~  195 (674)
                        ..-..+.|..+|..|+.+++..        ...+++.||++||+||++|++.+|+.+|||||||+|++|||+++    
T Consensus       166 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~D~lG~~yE~ll~~~~~~~~k~~G~ffTP~~Iv~lmv~ll----  241 (544)
T 3khk_A          166 SQYQLDADKLIGLINEFSLTSFNNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----  241 (544)
T ss_dssp             SSSCCCHHHHHHHHHHHC------------------CCSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHH----
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHCC----
T ss_conf             0102767889999875530334541001100145452062899999999998860764765548189999998623----


Q ss_pred             CHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC-----CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             011013877640311766540468999999999853100-----533322550466667889999999898088753345
Q gi|254780836|r  196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR  270 (674)
Q Consensus       196 ~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~-----~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~  270 (674)
                            .|.. .+||||||||||||++|.+|+.+.....     ......++||||+|+.+|+||+|||+|||.+.+   
T Consensus       242 ------~p~~-~~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~Ei~~~~~~la~~nm~l~g~~~~---  311 (544)
T 3khk_A          242 ------EPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN---  311 (544)
T ss_dssp             ------CCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB---
T ss_pred             ------CCCC-CCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCHHHHHHHHHHHHHCCCCCC---
T ss_conf             ------8998-837037777617899999999982452222202222011061503877999999988986188866---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             666682347545799986641899981685676531000111234-4226666535777747706599999999961466
Q gi|254780836|r  271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELP  349 (674)
Q Consensus       271 ~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e-~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~  349 (674)
                         .+|..+|+|.+|.+...+||+|++|||||++|.......... ...+..+|+..++|++++++++||||++++|++ 
T Consensus       312 ---~~~~~~d~l~~~~~~~~~fD~Il~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~-  387 (544)
T 3khk_A          312 ---FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP-  387 (544)
T ss_dssp             ---CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE-
T ss_pred             ---CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-
T ss_conf             ---4535675434655655446757506987766555300013545540345643457899874789999999971777-


Q ss_pred             CCCCCEEEEECCCCCCC-CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCC-----CCCCCEE
Q ss_conf             57880799973897134-77644326899999988494688831767765578861699999468874-----3488389
Q gi|254780836|r  350 PNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQ  423 (674)
Q Consensus       350 ~~~ggr~aIV~ngs~LF-~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~-----~rkgkV~  423 (674)
                         |||+|+|+|.|+|+ +|++   |..||+||+++++|+|||+||.++|++|||+||||||+|+|+.     +|+|+|+
T Consensus       388 ---~G~~aiIvp~~~l~~~~~~---e~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Ilvl~K~k~~~~~~~~~~~~V~  461 (544)
T 3khk_A          388 ---TGSMALLLANGSMSSNTNN---EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVL  461 (544)
T ss_dssp             ---EEEEEEEEETHHHHCCGGG---HHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCCSSBTTBCCCTTEEE
T ss_pred             ---CCEEEEEECCCCCCCCCCH---HHHHHHHHHHCCCEEEEEECCHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEE
T ss_conf             ---7806999768854367871---7899999996695899972882006899997599999889887665445678389


Q ss_pred             EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCE-EEEEEECCCCCCCCCCHHH
Q ss_conf             9723677657640466442069899999999997210254104744466305-7899720442121008889
Q gi|254780836|r  424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTG  494 (674)
Q Consensus       424 lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e~e~ski~~~~~Fgy-~~vtverplr~~~~~~~~~  494 (674)
                      |||||+.+.+   .|+++|.|+++||++|+++|++|++....+ -+..  || +.|+++.-....|.+++.|
T Consensus       462 fidas~~~~~---~~~~~~~l~~~~i~~I~~~~~~~~~~~~~~-~~~~--~~s~~v~~~eI~~ndy~L~~~r  527 (544)
T 3khk_A          462 FIDARKLGYM---KDRVLRDFKDEDIQKLADTFHNWQQEWSEE-NNQA--GFCFSADLALIRKNDFVLTPGR  527 (544)
T ss_dssp             EEECTTCSEE---SSSSCEECCHHHHHHHHHHHHHHHHCCCTT-TCBT--TTEEEEEHHHHHHTTTCCCTTT
T ss_pred             EEECCCCCEE---CCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCC--CEEEEEEHHHHHHCCCEECHHH
T ss_conf             9986545410---576678699999999999999987512322-6757--7489966999997695118675


No 2  
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=100.00  E-value=0  Score=698.81  Aligned_cols=435  Identities=25%  Similarity=0.396  Sum_probs=342.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHH-----------HHHC-CCCCCC
Q ss_conf             9841017888999999999874068883430872305489998967412339999999-----------9720-246889
Q gi|254780836|r    1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----------YLAF-GGSNID   68 (674)
Q Consensus         1 M~~~~~t~s~L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~-----------~~~~-~~~~~~   68 (674)
                      |++...|.++|.|+||++||.|||.|++++|++|||||+|||||+|.++....++.++           +... ......
T Consensus         1 m~~~~~t~~~L~s~lW~~ad~LRg~~~~~~Yk~~il~llFlK~lsD~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (542)
T 3lkd_A            1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEETESLDEALAVYRKYYEDEETH   80 (542)
T ss_dssp             -----CCHHHHHHHHHHTTHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHCTTTH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99751569999999999999984898878848725158989871352178999999874420666776765422565658


Q ss_pred             HHHHHHHCC-CCCCCCCCCCHHHHHHH--HHHHHHHHH------HHHHCHHHHHHHHHCCHHHHH---HHHHHCCHHHHH
Q ss_conf             678765338-96103680368861345--589999999------975299989998717723577---544423628999
Q gi|254780836|r   69 LESFVKVAG-YSFYNTSEYSLSTLGST--NTRNNLESY------IASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKI  136 (674)
Q Consensus        69 ~~~~~~~~g-~~F~n~s~~~~~~l~~~--~~~~nl~~y------i~gfS~nv~dI~~~f~f~~~i---~~L~~~~~L~~v  136 (674)
                      .+.+....+ ..|+..+.++|..+...  +...+++.+      |..-.+..++||+.+++.+..   .....+..|..+
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~if~~i~~~~~~~~~~~~~~~~~l~~~  160 (542)
T 3lkd_A           81 EDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQGFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAV  160 (542)
T ss_dssp             HHHHHHHHHHHSCCCCGGGSHHHHHHHHHHTCCCHHHHHHHHHHHHTTCTTTTTTTTTCCTTCGGGCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHH
T ss_conf             99999766505602684124699997343624569999999888763126777788651010233055555565589998


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCH
Q ss_conf             98740245673337611443899999999986227665753681799999999731784011013877640311766540
Q gi|254780836|r  137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT  216 (674)
Q Consensus       137 I~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGT  216 (674)
                      ++.+..+++..  .+.+.||++||+||++||+.+++++|||||||+|++|||+|+....      .+..+.+||||||||
T Consensus       161 ~~~~~~~~~~~--~~~D~~G~~yE~li~~~a~~~~~~~Ge~~TP~~Iv~lmv~l~~~~~------~~~~~~~I~DPacGs  232 (542)
T 3lkd_A          161 MKELAVLDVAG--HAGDMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGR------EDKQGFTLYDATMGS  232 (542)
T ss_dssp             HHHHHHSCCSS--SSTTHHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTC------TTCTTCEEEETTCTT
T ss_pred             HHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC------CCCCCCEEECCCCCC
T ss_conf             60010146553--3077889999999999888626647715898899985786425564------567898683277884


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEE
Q ss_conf             468999999999853100533322550466667889999999898088753345666682347545799986--641899
Q gi|254780836|r  217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHY  294 (674)
Q Consensus       217 GGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~--~~kFD~  294 (674)
                      ||||++|.+++.+.       ....+||||+|+.+|+||+|||+|||+...     ...|..+|||.+|.+.  ..+||+
T Consensus       233 GgfL~~a~~~~~~~-------~~~~~~G~e~~~~~~~la~~nl~l~g~~~~-----~~~i~~~d~l~~~~~~~~~~~fD~  300 (542)
T 3lkd_A          233 GSLLLNAKRYSRQP-------QTVVYFGQELNTSTYNLARMNMILHGVPIE-----NQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             STTGGGHHHHCSCT-------TTCEEEEEESCHHHHHHHHHHHHHTTCCGG-----GEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CHHHHHHHHHHHHH-------CCEEEEEEECCHHHHHHHHHHHHHHCCCCC-----CCEEECCCCCCCCCCCCCCCCEEE
T ss_conf             55889888877500-------555787442667999999998787246542-----220320565444443232320003


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCH
Q ss_conf             98168567653100011123442266665357777477065999999999614665788079997389713477644326
Q gi|254780836|r  295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE  374 (674)
Q Consensus       295 vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGE  374 (674)
                      ||+|||||.+|.........+     ..+...+.|+.++++++|+||++++|++   .|||+|||+|+|+||+|++   |
T Consensus       301 Il~NPPfg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~fi~~~~~~L~~---~gG~~~iV~p~g~L~~~~~---e  369 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDP-----RFSPFGKLAPKSKADFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---E  369 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGST-----TTGGGSSCCCTTCCHHHHHHHHHHTBCT---TTCEEEEEEETHHHHCCTH---H
T ss_pred             EEECCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCHH---H
T ss_conf             563488677767421112351-----0013577899862599999999998663---7872999954742235627---7


Q ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             89999998849468883176776557886169999946887434883899723677657640466442069899999999
Q gi|254780836|r  375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD  454 (674)
Q Consensus       375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~  454 (674)
                      +.||+||+++++|+|||+||.++||+|||+||||||+|+|+   +++|+|||||+.|.+    |+++|.|+++||++|++
T Consensus       370 ~~iR~~Lle~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~---~~~V~fida~~~~~~----~~~~~~l~~~~i~~i~~  442 (542)
T 3lkd_A          370 GTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNRT---NRDVYFIDASKEFDK----GKNQNIMTDAHIEKILN  442 (542)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSSCS---BCCEEEEECTTCCEE----CSSSEECCHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEEECCCC---CCCEEEEECCCCCCC----CCCCCCCCHHHHHHHHH
T ss_conf             78888876358589999799766668898789999968988---881899988776567----87878599999999999


Q ss_pred             HHHHCCCCC-CEEEEECCCC
Q ss_conf             997210254-1047444663
Q gi|254780836|r  455 IYVSRENGK-FSRMLDYRTF  473 (674)
Q Consensus       455 ~y~~f~e~e-~ski~~~~~F  473 (674)
                      +|.++++.+ +|++++.++.
T Consensus       443 ~~~~~~~~~~~s~~v~~~eI  462 (542)
T 3lkd_A          443 AYKSREDIDKFAHLASFEEI  462 (542)
T ss_dssp             HHHHTCCBTTTEEEECHHHH
T ss_pred             HHHCCCCCCCCEEEEEHHHH
T ss_conf             98631755893799689999


No 3  
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45
Probab=100.00  E-value=0  Score=630.72  Aligned_cols=390  Identities=21%  Similarity=0.335  Sum_probs=312.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHC-CCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             10178889999999998740-68883430872305489998967412339999999972024688967876533896103
Q gi|254780836|r    4 FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN   82 (674)
Q Consensus         4 ~~~t~s~L~s~iW~~Ad~LR-g~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~F~n   82 (674)
                      |+-+.++|+++||++||+|| |.+++++|+++|++|+||||+|+..++.                            +|.
T Consensus         1 m~~~~~~l~~klw~~ad~lR~ggi~~~~y~~~i~~llFlK~~~e~~~e~----------------------------~~i   52 (541)
T 2ar0_A            1 MSLNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----------------------------EYL   52 (541)
T ss_dssp             -----CHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHTCHH----------------------------HHS
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHCCCCH----------------------------HHC
T ss_conf             9986899999999999998669999899999999999987320152846----------------------------447


Q ss_pred             CCCCCHHHHHH---HHHHHHHHHHHHHH----CHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCC--CCCCCH
Q ss_conf             68036886134---55899999999752----9998999871772357754442362899998740245673--337611
Q gi|254780836|r   83 TSEYSLSTLGS---TNTRNNLESYIASF----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDR  153 (674)
Q Consensus        83 ~s~~~~~~l~~---~~~~~nl~~yi~gf----S~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p--~~v~n~  153 (674)
                      +..+.|..|..   +.....+...+..+    +.-+++||.++.+     ++.+...|..||+.|..+++.+  ...+.+
T Consensus        53 pe~~~w~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~if~~~~~-----~~~~~~~l~~lv~~i~~~~~~~~~~~~~~D  127 (541)
T 2ar0_A           53 PEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVST-----TITEPKQITALVSNMDSLDWYNGAHGKSRD  127 (541)
T ss_dssp             CTTSSHHHHHTCCHHHHHHHHHHHHHHHTSSSCHHHHHHHTTCCC-----CCCCHHHHHHHHHHHHTCCC----------
T ss_pred             CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             865878999852383789999999999987647889775242443-----236858999999865432555432455600


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             44389999999998622766575368179999999973178401101387764031176654046899999999985310
Q gi|254780836|r  154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH  233 (674)
Q Consensus       154 ~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~  233 (674)
                      .||++||+||++|++..++++|||||||+||++||+++          .|....+||||||||||||++|.+|+.+....
T Consensus       128 ~~G~~YE~ll~~~a~~~~k~~GqffTP~~Iv~~mv~ll----------~p~~~~~I~DPacGsG~fL~~a~~~l~~~~~~  197 (541)
T 2ar0_A          128 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTND  197 (541)
T ss_dssp             ----------------------CCCCCHHHHHHHHHHH----------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH----------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             77999999999998761775875679899999999862----------89988730465778560579999999984366


Q ss_pred             CCCC--------CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             0533--------32255046666788999999989808875334566668234754579998664189998168567653
Q gi|254780836|r  234 HKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW  305 (674)
Q Consensus       234 ~~~~--------~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~W  305 (674)
                      ....        ....+||||+++.+|+||+|||++||++.+..  ...++..+++|..|.....+||+||+|||||..|
T Consensus       198 ~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~g~~~~~~--~~~~~~~~~~l~~d~~~~~~fD~Vl~NPPfg~~~  275 (541)
T 2ar0_A          198 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD--HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             TTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGG--GTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC--CCCCHHCCCCHHHCCCCCCCCCEEEECCCCCCCC
T ss_conf             21110467888887666302066999999986466345630113--4750210450433044443466687369976644


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             10001112344226666535777747706599999999961466578807999738971347764432689999998849
Q gi|254780836|r  306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND  385 (674)
Q Consensus       306 k~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d  385 (674)
                      ..+              ++..+.|+.++++++||||++++|++    |||+|+|+|.|+||+|++   ++.||++|++++
T Consensus       276 ~~~--------------~~~~~~~~~~~~~~~Fi~~~l~~Lk~----~Gr~aiIlP~~~Lf~~~~---~~~iR~~Lle~~  334 (541)
T 2ar0_A          276 GTN--------------ITRTFVHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKC  334 (541)
T ss_dssp             SCC--------------CCSCCSSCCSCHHHHHHHHHHHHEEE----EEEEEEEEEHHHHHCCTH---HHHHHHHHHHHE
T ss_pred             CCC--------------CCCCCCCCCCCHHHHHHHHHHHHCCC----CCEEEEEECCCHHHCCHH---HHHHHHHHHHCC
T ss_conf             434--------------30002576552779999999997378----976999956820101000---079999998629


Q ss_pred             CEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC------CCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             468883176776557886169999946887434------88389972367765764046644206989999999999721
Q gi|254780836|r  386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR  459 (674)
Q Consensus       386 ~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~r------kgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f  459 (674)
                      .|+|||.||+++||+|||+||||||+|+|+..+      +++|+||||+..+.+    +.|||+|+++||++|+++|..+
T Consensus       335 ~l~aII~LP~~~F~~t~v~t~Il~l~K~k~~~~~~~~~~~~~v~f~d~~~~~~~----~~k~~~l~~e~i~~i~~~y~~~  410 (541)
T 2ar0_A          335 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS----FGKRTPFTDEHLQPFERVYGED  410 (541)
T ss_dssp             EEEEEEECCSSCSSSCSCCEEEEEEEEBCSSCTTCCSCCCCEEEEEECSTTCCC----CSSSSCCCGGGTHHHHHHHCSC
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEHHHCCCC----CCCCCCCCHHHHHHHHHHHHHC
T ss_conf             189999787044789999769999989987765444577660799984321876----6698849999999999997213


Q ss_pred             CCCC
Q ss_conf             0254
Q gi|254780836|r  460 ENGK  463 (674)
Q Consensus       460 ~e~e  463 (674)
                      .++.
T Consensus       411 ~~~~  414 (541)
T 2ar0_A          411 PHGL  414 (541)
T ss_dssp             TTSC
T ss_pred             CCCC
T ss_conf             2234


No 4  
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=100.00  E-value=0  Score=597.19  Aligned_cols=406  Identities=21%  Similarity=0.342  Sum_probs=316.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCC-CCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
Q ss_conf             9841017888999999999874068-883430872305489998967412339999999972024688967876533896
Q gi|254780836|r    1 MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS   79 (674)
Q Consensus         1 M~~~~~t~s~L~s~iW~~Ad~LRg~-~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~   79 (674)
                      |+.++.|+++|+++||++||.|||+ +++++|..+|++|+|||++++..+           .....              
T Consensus         2 m~~~~~~~~~l~~~iW~~ad~lRg~g~~~~~y~~~i~~llflK~~~e~~~-----------~~~~~--------------   56 (445)
T 2okc_A            2 MATNSSTEQSLTKKVWNLATTLAGQGIGFTDYITQLTYLLFLKMDAENVE-----------MFGEE--------------   56 (445)
T ss_dssp             --------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-----------HTCCC--------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------HHCCC--------------
T ss_conf             88775009999999999999964799988899999999998777151124-----------44450--------------


Q ss_pred             CCCCCCCCHHHH---HHHHHHHHHH---HHHHHHCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             103680368861---3455899999---9997529998999871772357754442362899998740245673337611
Q gi|254780836|r   80 FYNTSEYSLSTL---GSTNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR  153 (674)
Q Consensus        80 F~n~s~~~~~~l---~~~~~~~nl~---~yi~gfS~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~  153 (674)
                      +..++.+.|..+   ...++...+.   .++...+..+++||.+..     .++.+...|..||++|+.++++.  .+.+
T Consensus        57 ~~~p~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~-----~~~~~~~~L~~~i~~i~~~~~~~--~~~d  129 (445)
T 2okc_A           57 SAIPTGYQWADLIAFDGLDLVKQYEETLKLLSELDNLIGTIYTKAQ-----NKIDKPVYLKKVITMIDEEQWLI--MDGD  129 (445)
T ss_dssp             CSSCTTCSHHHHHTCCSHHHHHHHHHHHHHHHTSCHHHHHHTTTCC-----CCCCCHHHHHHHHHHHHTSCCTT--SCSH
T ss_pred             CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHCCC--CCCH
T ss_conf             1499778589987165077999999999986864416755234555-----35587689999999864551356--7821


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             44389999999998622766575368179999999973178401101387764031176654046899999999985310
Q gi|254780836|r  154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH  233 (674)
Q Consensus       154 ~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~  233 (674)
                      .||++||+||++|++++++++|||||||+|+++||+++          .|....+||||||||||||+++.+++.+.+..
T Consensus       130 ~~G~~yE~ll~~~a~~~~k~~GqffTP~~Iv~~mv~ll----------~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~  199 (445)
T 2okc_A          130 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSAS  199 (445)
T ss_dssp             HHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHH----------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-C
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC----------CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             75899999999998752543804659899999999760----------79999978127889766599999999873122


Q ss_pred             CCC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
Q ss_conf             053---33225504666678899999998980887533456666823475457999866418999816856765310001
Q gi|254780836|r  234 HKI---PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD  310 (674)
Q Consensus       234 ~~~---~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~  310 (674)
                      ...   ....++||||+++.++++|+|||++||....     ..+|..+|++..+  +..+||+||+|||||..|.....
T Consensus       200 ~~~~~~~~~~~i~G~e~~~~~~~la~~nl~l~~~~~~-----~~~i~~~d~~~~~--~~~~fD~Ii~NPPf~~~~~~~~~  272 (445)
T 2okc_A          200 KEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD-----RSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVD  272 (445)
T ss_dssp             CHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS-----CCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCC
T ss_pred             HHHHHHHHHHCEECEECCHHHHHHHHHHCCCCCCCCC-----CCEEECCCHHHHC--CCCCCCEEECCCCCCCCCCCCCC
T ss_conf             7777553010142341209999999962310277643-----2012215303202--43468722458997888655331


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             11234422666653577774770659999999996146657880799973897134776443268999999884946888
Q gi|254780836|r  311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI  390 (674)
Q Consensus       311 ~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaI  390 (674)
                                ..|+.. .++.++++++||+|+++.|++    |||+|+|+|.|+||++++   +..||++|++++.|+||
T Consensus       273 ----------~~~~~~-~~~~~~~~~~Fi~~~l~~Lk~----~G~~aiIvP~~~L~~~~~---~~~iR~~Ll~~~~i~~I  334 (445)
T 2okc_A          273 ----------INRPDF-YVETKNNQLNFLQHMMLMLKT----GGRAAVVLPDNVLFEAGA---GETIRKRLLQDFNLHTI  334 (445)
T ss_dssp             ----------CCCTTS-SSCCSCHHHHHHHHHHHHEEE----EEEEEEEEEHHHHHCSTH---HHHHHHHHHHHEEEEEE
T ss_pred             ----------CCHHHH-CCCCCCHHHHHHHHHHHHHCC----CCEEEEEECCHHHHCCCH---HHHHHHHHHHCCCCEEE
T ss_conf             ----------022443-012330779999999998217----985999934288647630---58999999981985289


Q ss_pred             EECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             31767765578861699999468874348838997236776576404664420698999999999972102541047444
Q gi|254780836|r  391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY  470 (674)
Q Consensus       391 I~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e~e~ski~~~  470 (674)
                      |.||.++|++||++||||||+|+|+.+   +|+||||+..|.+    +.++|.|+++||++|+++|.++++.....  .+
T Consensus       335 i~lp~~~F~~t~v~t~Ilvl~K~k~~~---~V~fid~~~~~~~----~~~~n~l~~~~i~~i~~~~~~~~~~~~~~--~~  405 (445)
T 2okc_A          335 LRLPTGIFYAQGVKANVLFFSKGQPTK---EIWFYDYRTDIKH----TLATNKLERHHLDDFVSCYNNRVEIYDAE--NN  405 (445)
T ss_dssp             EECCSSSSSSTTCCEEEEEEEESSCCS---EEEEEECSTTCCC----CSSSSCCCGGGGHHHHHHHHSCCCCCBTT--TB
T ss_pred             EECCCCCCCCCCCCEEEEEEECCCCCC---CEEEEECCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CC
T ss_conf             999725546899965999998999987---3799987443331----35778699999999999998677654202--47


Q ss_pred             CCCCEEEEEEEC
Q ss_conf             663057899720
Q gi|254780836|r  471 RTFGYRRIKVLR  482 (674)
Q Consensus       471 ~~Fgy~~vtver  482 (674)
                      .+.-++.|+++.
T Consensus       406 ~~~~~~~v~~~e  417 (445)
T 2okc_A          406 PQGRWRKYPVDE  417 (445)
T ss_dssp             TTCSEEEEEHHH
T ss_pred             CCCCEEEEEHHH
T ss_conf             677179801999


No 5  
>2f8l_A Hypothetical protein LMO1582; 16411011, structural genomics, PSI, protein structure initiative, joint center for structural genomics; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=100.00  E-value=0  Score=342.76  Aligned_cols=287  Identities=17%  Similarity=0.212  Sum_probs=209.0

Q ss_pred             HHHHHHCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             99975299989998717723577544423628999987402456733376114438999999999862276657536817
Q gi|254780836|r  102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR  181 (674)
Q Consensus       102 ~yi~gfS~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR  181 (674)
                      .|++++......++..-...  ...+. ......+.+.+..+++.  .++...+|.+||+++.++.. .+..+|+|||||
T Consensus        39 ~~leal~e~~~~i~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~-~~~~~g~~~TP~  112 (344)
T 2f8l_A           39 SYLEAVYETGENLFQKEVLQ--KEELS-SEKQLKLQASYESIELE--NFSNEEIRKGLQLALLKGMK-HGIQVNHQMTPD  112 (344)
T ss_dssp             CHHHHHHHHHHHHHHTSCTT--CCC-----CHHHHHHHHHTCCGG--GSCHHHHHHHHHHHHHHHTS-SSCCGGGCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHCCC-HHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHH-HCCCCCEECCCH
T ss_conf             37899999878875203554--30168-88999999999975453--25878899999999999998-436488137848


Q ss_pred             HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r  182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI  261 (674)
Q Consensus       182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli  261 (674)
                      .|+.+|+.++.     .+. .+....+|+|||||||+||+++.+++....     ....++||+|+++.++++|++||.+
T Consensus       113 ~i~~~m~~l~~-----~~~-~~~~~~~vlDp~cGsG~~l~~~~~~l~~~~-----~~~~~~~g~di~~~~~~~a~~n~~~  181 (344)
T 2f8l_A          113 SIGFIVAYLLE-----KVI-QKKKNVSILDPACGTANLLTTVINQLELKG-----DVDVHASGVDVDDLLISLALVGADL  181 (344)
T ss_dssp             HHHHHHHHHHH-----HHH-TTCSEEEEEETTCTTSHHHHHHHHHHHTTS-----SCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----HHH-CCCCCCEEEECCCCCCHHHHHHHHHHHHCC-----CCCEEEEEEECCHHHHHHHHHCCCC
T ss_conf             99999999999-----983-789998899548996689999999987536-----7761899998999999999964000


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             08875334566668234754579998664189998168567653100011123442266665357777477065999999
Q gi|254780836|r  262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH  341 (674)
Q Consensus       262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh  341 (674)
                      ++...        ++..+|++...  ...+||+|++|||||..|.....       ..+..+   +....++.+++|++|
T Consensus       182 ~~~~~--------~~~~~d~~~~~--~~~~fD~iv~NPP~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~fi~~  241 (344)
T 2f8l_A          182 QRQKM--------TLLHQDGLANL--LVDPVDVVISDLPVGYYPDDENA-------KTFELC---REEGHSFAHFLFIEQ  241 (344)
T ss_dssp             HTCCC--------EEEESCTTSCC--CCCCEEEEEEECCCSEESCHHHH-------TTSTTC---CSSSCEEHHHHHHHH
T ss_pred             CCCHH--------HHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHH-------HHHCCC---CCCCCCHHHHHHHHH
T ss_conf             22212--------33100110013--46776721157996676300244-------420001---357742599999999


Q ss_pred             HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC-CC
Q ss_conf             99961466578807999738971347764432689999998849468883176776557886169999946887434-88
Q gi|254780836|r  342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-RG  420 (674)
Q Consensus       342 ~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~r-kg  420 (674)
                      +++.|++    ||++++|+|.|.|+ |..   +..+|++|++++.|++||.||.++|++|+++||||||+|+++..+ .+
T Consensus       242 ~~~~Lk~----~G~~~~I~P~~~l~-~~~---~~~lR~~L~~~~~i~~ii~Lp~~~F~~~~~~t~Ilvl~K~~~~~~~~~  313 (344)
T 2f8l_A          242 GMRYTKP----GGYLFFLVPDAMFG-TSD---FAKVDKFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADVDVKPPK  313 (344)
T ss_dssp             HHHTEEE----EEEEEEEEEGGGGG-STT---HHHHHHHHHHHEEEEEEEECCGGGSCC-CCCEEEEEEEECCTTCCCCS
T ss_pred             HHHHCCC----CCEEEEEECCHHCC-CCH---HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf             9985488----86299996643116-846---999999998589189986578211799998769999987898767777


Q ss_pred             CEEEEECHHHHHH
Q ss_conf             3899723677657
Q gi|254780836|r  421 KVQLINATDLWTS  433 (674)
Q Consensus       421 kV~lIDAs~~~~~  433 (674)
                      +|+|+|++.++.+
T Consensus       314 ~v~~~~~~~~~~~  326 (344)
T 2f8l_A          314 EVLLANLSSLTDP  326 (344)
T ss_dssp             SCEEEECCCSSCH
T ss_pred             EEEEEECCCCCCH
T ss_conf             0899988643377


No 6  
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=100.00  E-value=2.4e-38  Score=268.35  Aligned_cols=208  Identities=17%  Similarity=0.170  Sum_probs=155.3

Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             99999986227665753681799999999731784011013877640311766540468999999999853100533322
Q gi|254780836|r  161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL  240 (674)
Q Consensus       161 ~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~  240 (674)
                      -+++..+....++-|+||||.+|+++|++++.          +....+|+|||||||+||+.+.+++..         ..
T Consensus         5 ~~~~~~s~~~~k~~G~~yTP~~i~~~~~~~l~----------~~~~~~IlDPacGsG~FL~~~~~~~~~---------~~   65 (421)
T 2ih2_A            5 PLLSLPSNSAPRSLGRVETPPEVVDFMVSLAE----------APRGGRVLEPACAHGPFLRAFREAHGT---------AY   65 (421)
T ss_dssp             ----------------CCCCHHHHHHHHHHCC----------CCTTCEEEEETCTTCHHHHHHHHHHCS---------CS
T ss_pred             HHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC----------CCCCCEEEECCCCHHHHHHHHHHHCCC---------CC
T ss_conf             66421100133429878891999999999478----------999699996877646999999986776---------78


Q ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH-HHHCC
Q ss_conf             55046666788999999989808875334566668234754579998664189998168567653100011123-44226
Q gi|254780836|r  241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-EHKNG  319 (674)
Q Consensus       241 ~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~-e~~~~  319 (674)
                      ++||+|+++.++++|+++                +|..||+|..+.  ..+||+|++||||+............ .....
T Consensus        66 ~i~G~did~~~~~la~~~----------------~i~~~D~l~~~~--~~~fD~VigNPPy~~~~~~~~~~~~~~~~~~~  127 (421)
T 2ih2_A           66 RFVGVEIDPKALDLPPWA----------------EGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKD  127 (421)
T ss_dssp             EEEEEESCTTTCCCCTTE----------------EEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHH
T ss_pred             EEEEEECCHHHHHHHHHH----------------HHHHCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             699997989999999974----------------277377333685--45777787257655445455442123333222


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf             66653577774770659999999996146657880799973897134776443268999999884946888317677655
Q gi|254780836|r  320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF  399 (674)
Q Consensus       320 ~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy  399 (674)
                      ...+.........|-..+|++++++.|++    ||++|+|+|.|.|+...    ...+|++|++++.+  +|.+|.++|.
T Consensus       128 ~~~~~~~~~~~~~dl~~~Fi~~~l~~lk~----~G~~~~I~P~s~l~~~~----~~~lR~~L~~~~~i--~i~~~~~~F~  197 (421)
T 2ih2_A          128 LYKKAFSTWKGKYNLYGAFLEKAVRLLKP----GGVLVFVVPATWLVLED----FALLREFLAREGKT--SVYYLGEVFP  197 (421)
T ss_dssp             HHHHHCTTCCTTCCHHHHHHHHHHHHEEE----EEEEEEEEEGGGGTCGG----GHHHHHHHHHHSEE--EEEEEESCST
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHHCCC----CCCEEEEECCCCCCCCC----HHHHHHHHHHCCCE--EEECCCCCCC
T ss_conf             22013567899653999999999996377----88189990673112641----39999999963979--9984731135


Q ss_pred             CCCCCEEEEEEECCCC
Q ss_conf             7886169999946887
Q gi|254780836|r  400 RTNIATYLWILSNRKT  415 (674)
Q Consensus       400 nTgI~t~Iwil~k~K~  415 (674)
                      +|+++|||++++|+++
T Consensus       198 ~a~v~t~Il~l~K~~~  213 (421)
T 2ih2_A          198 QKKVSAVVIRFQKSGK  213 (421)
T ss_dssp             TCCCCEEEEEEESSSC
T ss_pred             CCCCCEEEEEEECCCC
T ss_conf             7887469999982798


No 7  
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.57  E-value=1.1e-13  Score=107.35  Aligned_cols=101  Identities=7%  Similarity=-0.004  Sum_probs=73.7

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      ...+.||.+.++++...+          .....+|+|++||||++.+.......    .      ..++|.|+++.....
T Consensus        35 ~~~liP~~~~~~l~~~~~----------~~~~~~vLDig~G~G~~~~~~a~~~~----~------~~v~~vDi~~~~~~~   94 (230)
T 3evz_A           35 PKGLVTTPISRYIFLKTF----------LRGGEVALEIGTGHTAMMALMAEKFF----N------CKVTATEVDEEFFEY   94 (230)
T ss_dssp             TTSCCCCHHHHHHHHHTT----------CCSSCEEEEECCTTTCHHHHHHHHHH----C------CEEEEEECCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHC----------CCCCCEEEEEECCHHHHHHHHHHHCC----C------CEEEEEECCCCHHHH
T ss_conf             995149837799999845----------78989899940744399999999779----9------879999886311246


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             9999898088753345666682347545799986641899981685676
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~  303 (674)
                      |+.|+-..+.+.        +|...|.-.-..+...+||+|++||||..
T Consensus        95 a~~n~~~~~~~~--------~i~~~~~~~~~~~~~~~fD~Iv~NPPy~~  135 (230)
T 3evz_A           95 ARRNIERNNSNV--------RLVKSNGGIIKGVVEGTFDVIFSAPPYYD  135 (230)
T ss_dssp             HHHHHHHTTCCC--------EEEECSSCSSTTTCCSCEEEEEECCCCC-
T ss_pred             HHHHHHHCCCCC--------EEEEEECCCHHHCCCCCCCEEEECCCCCC
T ss_conf             776688606651--------79985211012135765248998999556


No 8  
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structural genomics; HET: SAH; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.66.1.32
Probab=99.38  E-value=7.7e-13  Score=101.86  Aligned_cols=103  Identities=18%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf             66575368179999999973178401101387764031176654046899999999985310053332255046666788
Q gi|254780836|r  172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET  251 (674)
Q Consensus       172 ~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t  251 (674)
                      ..-|||.||.+++.-|+.+...     ..+-+  +.+|+|++||||++.+.+...        +   ...++|.|+++.+
T Consensus        23 ~~l~q~~Tp~~ia~~~~~~a~~-----~~dl~--g~~vlDlg~G~G~l~i~a~~~--------g---~~~v~~vDid~~~   84 (207)
T 1wy7_A           23 VWLEQYRTPGNAASELLWLAYS-----LGDIE--GKVVADLGAGTGVLSYGALLL--------G---AKEVICVEVDKEA   84 (207)
T ss_dssp             GGGTCCCCCHHHHHHHHHHHHH-----TTSST--TCEEEEETCTTCHHHHHHHHT--------T---CSEEEEEESCHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHH-----CCCCC--CCEEEECCCCCCHHHHHHHHC--------C---CCEEEEECCCHHH
T ss_conf             3511379999999999999986-----49879--898999134256999999974--------9---9869998798999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             99999998980887533456666823475457999866418999816856765
Q gi|254780836|r  252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       252 yaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      ..+|+.|+-..+.+.        ++..+|...    ...+||+|++|||||..
T Consensus        85 ~~~a~~N~~~~~~~~--------~~~~~d~~~----~~~~~D~ii~npP~~~~  125 (207)
T 1wy7_A           85 VDVLIENLGEFKGKF--------KVFIGDVSE----FNSRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             HHHHHHHTGGGTTSE--------EEEESCGGG----CCCCCSEEEECCCCSSS
T ss_pred             HHHHHHHHHHCCCCC--------EEEECCHHH----HHCCCCEEECCCCCCHH
T ss_conf             999999999839982--------799766788----61465464448885201


No 9  
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=99.25  E-value=1.7e-11  Score=93.09  Aligned_cols=91  Identities=21%  Similarity=0.371  Sum_probs=61.9

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHH----------------------------HHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             40311766540468999999999----------------------------85310053332255046666788999999
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVA----------------------------DCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~----------------------------~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      ..+++||.||||.+|++|.-...                            +............+||.|+++....+|+.
T Consensus       196 ~~~l~DPmCGSGTilIEAal~a~~~~pg~~r~f~f~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~g~D~d~~~i~~a~~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf             98557888995679999999980879775622344322126889999999999863204667867996587889999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             98980887533456666823475457999866418999816856765
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      |.-.-|+....      .+..+|...-.  .....++|++|||||..
T Consensus       276 N~~~agv~~~i------~~~~~d~~~~~--~~~~~~~ivtNPPYG~R  314 (385)
T 3ldu_A          276 NAEIAGVDEYI------EFNVGDATQFK--SEDEFGFIITNPPYGER  314 (385)
T ss_dssp             HHHHHTCGGGE------EEEECCGGGCC--CSCBSCEEEECCCCCCS
T ss_pred             HHHHCCCCCCE------EEEECCHHHCC--CCCCCCEEEECCCCCCC
T ss_conf             99973997637------88754587759--99999879958970201


No 10 
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.17  E-value=8.5e-10  Score=82.00  Aligned_cols=163  Identities=13%  Similarity=0.159  Sum_probs=93.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      ..||-||-+|..-|+..+...     .+-.  +.+|.|++||||.+-+.+..    .+       ...++|.|+++.+..
T Consensus        27 leQY~t~~~iaa~~~~~~~~~-----gd~~--Gk~VLDlGcGtG~l~i~a~~----~g-------a~~V~~vDid~~a~~   88 (200)
T 1ne2_A           27 LEQYPTDASTAAYFLIEIYND-----GNIG--GRSVIDAGTGNGILACGSYL----LG-------AESVTAFDIDPDAIE   88 (200)
T ss_dssp             ---CCCCHHHHHHHHHHHHHH-----TSSB--TSEEEEETCTTCHHHHHHHH----TT-------BSEEEEEESCHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHC-----CCCC--CCEEEECCCCHHHHHHHHHH----CC-------CCEEEEEECCHHHHH
T ss_conf             100799889999999999866-----9989--39899875751099999996----79-------987967508999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             99999898088753345666682347545799986641899981685676531000111234422666653577774770
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD  333 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd  333 (674)
                      +|+.|.-  .          -++..+|-..    ...+||.|++|||||...+                          .
T Consensus        89 ~a~~N~~--~----------~~~~~~d~~~----~~~~fD~Vi~NPPfg~~~~--------------------------~  126 (200)
T 1ne2_A           89 TAKRNCG--G----------VNFMVADVSE----ISGKYDTWIMNPPFGSVVK--------------------------H  126 (200)
T ss_dssp             HHHHHCT--T----------SEEEECCGGG----CCCCEEEEEECCCC--------------------------------
T ss_pred             HHHHHHH--H----------CCCEEEEHHH----CCCCCCEEEECCCCCHHHC--------------------------C
T ss_conf             9999898--5----------7853765210----5775488987798631101--------------------------6


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE----EECCCCCCCC----CCCCE
Q ss_conf             659999999996146657880799973897134776443268999999884946888----3176776557----88616
Q gi|254780836|r  334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI----VALPTDLFFR----TNIAT  405 (674)
Q Consensus       334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaI----I~LP~~lFyn----TgI~t  405 (674)
                      .+..||......        +  .+|..   +.  .+ +.+.-|++.+-+.+.+...    ..||.-..+.    --|..
T Consensus       127 ~D~~fl~~a~~~--------~--~~vys---~h--~~-~~~~~i~~~~~~~g~i~~~~~~~f~lp~~y~~H~~~~~~i~v  190 (200)
T 1ne2_A          127 SDRAFIDKAFET--------S--MWIYS---IG--NA-KARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEA  190 (200)
T ss_dssp             -CHHHHHHHHHH--------E--EEEEE---EE--EG-GGHHHHHHHHHHHEEEEEEEEEEEECCSCCC------CEEEE
T ss_pred             CCHHHHHHHHCC--------C--CEEEE---EE--HH-HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCEEEEEEE
T ss_conf             649999998605--------8--58997---20--13-269999998642753999985167784013033130217999


Q ss_pred             EEEEEEC
Q ss_conf             9999946
Q gi|254780836|r  406 YLWILSN  412 (674)
Q Consensus       406 ~Iwil~k  412 (674)
                      .+|.+.+
T Consensus       191 ~~~ri~~  197 (200)
T 1ne2_A          191 VIFGVRN  197 (200)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
T ss_conf             9999932


No 11 
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.15  E-value=3e-10  Score=84.96  Aligned_cols=166  Identities=16%  Similarity=0.178  Sum_probs=101.4

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      -+=||+=..++|+.+...    .   .....+|.|-|||||-.-+.....    .+      ...++|.|++++..++|+
T Consensus        88 vlIPRpeTE~lv~~~l~~----~---~~~~~~ilDlgtGsG~I~i~la~~----~p------~~~v~a~Dis~~Al~~A~  150 (276)
T 2b3t_A           88 TLIPRPDTECLVEQALAR----L---PEQPCRILDLGTGTGAIALALASE----RP------DCEIIAVDRMPDAVSLAQ  150 (276)
T ss_dssp             SCCCCTTHHHHHHHHHHH----S---CSSCCEEEEETCTTSHHHHHHHHH----CT------TSEEEEECSSHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH----C---CCCCCEEEEECCCCHHHHHHHHHH----CC------CCEEEEECCCHHHHHHHH
T ss_conf             706997699999999875----1---457861764146532999999986----89------875886417668899999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC--CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             99898088753345666682347545799986641899981685676--5310001112344226666535777747706
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK--KWEKDKDAVEKEHKNGELGRFGPGLPKISDG  334 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~--~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg  334 (674)
                      -|.-.+|...       -++..||-+..  ..+.+||+|+|||||=.  +|+.....++.|...        .+-...||
T Consensus       151 ~Na~~~~~~~-------v~~~~~D~~~~--~~~~~fDlIvsNPPYi~~~~~~~~~~~v~~EP~~--------AL~gg~dG  213 (276)
T 2b3t_A          151 RNAQHLAIKN-------IHILQSDWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLT--------ALVAADSG  213 (276)
T ss_dssp             HHHHHHTCCS-------EEEECCSTTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCST--------TTBCHHHH
T ss_pred             HHHHHCCCCC-------EEEEECCCCCC--CCCCCEEEEEECCCCCCHHHHHCCCCCCCCCHHH--------HHHCCCCH
T ss_conf             9999749987-------79997576433--6788415788569867713454077521233788--------86178647


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             5999999999614665788079997389713477644326899999988494
Q gi|254780836|r  335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL  386 (674)
Q Consensus       335 ~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~  386 (674)
                       +.|+.+++.......+.||.+.+.+..        .+ ...+++.+.++++
T Consensus       214 -l~~~~~ii~~a~~~L~~~G~l~lEig~--------~q-~~~v~~~~~~~gf  255 (276)
T 2b3t_A          214 -MADIVHIIEQSRNALVSGGFLLLEHGW--------QQ-GEAVRQAFILAGY  255 (276)
T ss_dssp             -THHHHHHHHHHGGGEEEEEEEEEECCS--------SC-HHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHHHHCCCCCEEEEEECC--------HH-HHHHHHHHHHCCC
T ss_conf             -899999999999851679889999890--------69-9999999997799


No 12 
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str}
Probab=99.14  E-value=1.6e-10  Score=86.80  Aligned_cols=91  Identities=19%  Similarity=0.307  Sum_probs=60.3

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHH----------------------------HHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             403117665404689999999998----------------------------5310053332255046666788999999
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVAD----------------------------CGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~----------------------------~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      ..+++||.||||.+|++|.-....                            ............++|.|+++...+.|+.
T Consensus       202 ~~~llDPmCGSGTilIEAAl~a~~~~pg~~R~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~i~g~D~d~~ai~~a~~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH
T ss_conf             98330678996679999999973878886624354422468999999999998754305887638999598999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             98980887533456666823475457999866418999816856765
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      |.---|+....      .+..+|-..-+  .....++|++|||||..
T Consensus       282 N~~~ag~~~~i------~~~~~d~~~~~--~~~~~~~iv~NPPYG~R  320 (393)
T 3k0b_A          282 NAVEAGLGDLI------TFRQLQVADFQ--TEDEYGVVVANPPYGER  320 (393)
T ss_dssp             HHHHTTCTTCS------EEEECCGGGCC--CCCCSCEEEECCCCCCS
T ss_pred             HHHHCCCCCHH------HHHHCCHHHCC--CCCCCCEEEECCCCHHH
T ss_conf             99973870000------03320197759--99999789988984411


No 13 
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.08  E-value=1.7e-10  Score=86.55  Aligned_cols=131  Identities=11%  Similarity=0.105  Sum_probs=76.5

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL  282 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL  282 (674)
                      +.....|.|++||||.........    .+      ...++|.|+++....+|+-|.-+...+.-  .+ .-.+..||-.
T Consensus        34 ~~~~~rVLDlG~G~G~i~l~La~r----~~------~~~v~gvEi~~~~~~lAr~N~~ln~~~~~--~~-ri~~~~~Di~  100 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAAR----LE------KAEVTLYERSQEMAEFARRSLELPDNAAF--SA-RIEVLEADVT  100 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHH----CT------TEEEEEEESSHHHHHHHHHHTTSGGGTTT--GG-GEEEEECCTT
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHH----CC------CCEEEEEECCHHHHHHHHHHHHHHHHCCC--CC-CCEEEECHHH
T ss_conf             889899999543676999999985----89------98899998999999999999998654433--23-5358963321


Q ss_pred             CC------CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCE
Q ss_conf             79------9986641899981685676531000111234422666653577774770659-9999999961466578807
Q gi|254780836|r  283 SK------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGR  355 (674)
Q Consensus       283 ~~------d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr  355 (674)
                      ..      ..++..+||+|++||||...  ....  ..+ ......|...      .+.+ .|+......||+    ||+
T Consensus       101 ~~~~~~~~~~~~~~~fD~VvsNPPY~~~--~~~~--~~~-~~~~~a~~~~------~~~l~~~i~~a~~lLkp----gG~  165 (260)
T 2ozv_A          101 LRAKARVEAGLPDEHFHHVIMNPPYNDA--GDRR--TPD-ALKAEAHAMT------EGLFEDWIRTASAIMVS----GGQ  165 (260)
T ss_dssp             CCHHHHHHTTCCTTCEEEEEECCCC--------------------------------CCHHHHHHHHHHHEEE----EEE
T ss_pred             CCCHHHHHHHHCCCCCCEEEECCCCCCC--CCCC--CCC-HHHHHHHHHC------CCCHHHHHHHHHHHCCC----CCE
T ss_conf             3221234433136762679866984466--6566--877-6778877504------68899999999997288----989


Q ss_pred             EEEECC
Q ss_conf             999738
Q gi|254780836|r  356 AAIVLS  361 (674)
Q Consensus       356 ~aIV~n  361 (674)
                      +++|++
T Consensus       166 l~~i~~  171 (260)
T 2ozv_A          166 LSLISR  171 (260)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
T ss_conf             999987


No 14 
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.91  E-value=1e-08  Score=74.98  Aligned_cols=129  Identities=9%  Similarity=0.124  Sum_probs=84.6

Q ss_pred             CCCCCCCHH---HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf             657536817---99999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r  173 GAEDFMTPR---DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP  249 (674)
Q Consensus       173 ~aGeffTPR---~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~  249 (674)
                      .+|- |+|+   ...+++++.+          .+....+|+|.+||||.+.+.+.+       ..     -.++|.|+++
T Consensus        28 ~~gv-f~~~~~d~~t~~Ll~~l----------~~~~~~~vLDiGcG~G~~~~~la~-------~~-----~~v~~iDis~   84 (194)
T 1dus_A           28 DSGV-FSYGKVDKGTKILVENV----------VVDKDDDILDLGCGYGVIGIALAD-------EV-----KSTTMADINR   84 (194)
T ss_dssp             ETTS-TTTTSCCHHHHHHHHHC----------CCCTTCEEEEETCTTSHHHHHHGG-------GS-----SEEEEEESCH
T ss_pred             CCCC-CCCCCCCHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHH-------HC-----CEEEEEECCH
T ss_conf             8987-68998699999999828----------988999499956964299999997-------38-----8479982636


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             88999999989808875334566668234754579998664189998168567653100011123442266665357777
Q gi|254780836|r  250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP  329 (674)
Q Consensus       250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP  329 (674)
                      ....+|+.|.-..+++...     -.+..+|.+.  .+++.+||+|++||||-..  .                      
T Consensus        85 ~~i~~a~~n~~~~~l~~~~-----i~~~~~D~~~--~~~~~~fD~Ii~~~~~~~~--~----------------------  133 (194)
T 1dus_A           85 RAIKLAKENIKLNNLDNYD-----IRVVHSDLYE--NVKDRKYNKIITNPPIRAG--K----------------------  133 (194)
T ss_dssp             HHHHHHHHHHHHTTCTTSC-----EEEEECSTTT--TCTTSCEEEEEECCCSTTC--H----------------------
T ss_pred             HHHHHHHHHHHHHCCCCCE-----EEEEECCHHH--HCCCCCCCEEEECCCHHCC--C----------------------
T ss_conf             7889999999981999861-----9999873676--3356774399999522116--1----------------------


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             477065999999999614665788079997389
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                         +-...++..+...|++    ||++.+|.+.
T Consensus       134 ---~~~~~~l~~~~~~Lkp----gG~l~i~~~~  159 (194)
T 1dus_A          134 ---EVLHRIIEEGKELLKD----NGEIWVVIQT  159 (194)
T ss_dssp             ---HHHHHHHHHHHHHEEE----EEEEEEEEES
T ss_pred             ---HHHHHHHHHHHHHCCC----CCEEEEEEEC
T ss_conf             ---5679999999996096----9799999977


No 15 
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.84  E-value=2.7e-08  Score=72.23  Aligned_cols=123  Identities=20%  Similarity=0.280  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r  182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI  261 (674)
Q Consensus       182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli  261 (674)
                      .-.+|+.+-+          .+....+|.|.+||+|.+...+...    ++.      ..+.|.|+++.....|+.|+-.
T Consensus       183 ~gt~lLl~~l----------~~~~~~~VLDlGcG~G~l~~~la~~----~p~------~~v~~vD~s~~al~~ar~n~~~  242 (343)
T 2pjd_A          183 VGSQLLLSTL----------TPHTKGKVLDVGCGAGVLSVAFARH----SPK------IRLTLCDVSAPAVEASRATLAA  242 (343)
T ss_dssp             HHHHHHHHHS----------CTTCCSBCCBTTCTTSHHHHHHHHH----CTT------CBCEEEESBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHH----CCC------CEEEEEECCHHHHHHHHHHHHH
T ss_conf             9999999856----------5058982999325277999999997----899------7899998999999999999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             08875334566668234754579998664189998168567653100011123442266665357777477065999999
Q gi|254780836|r  262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH  341 (674)
Q Consensus       262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh  341 (674)
                      .|...        .+..+|.++..   ..+||.|++||||-..-.     +..                  +--.-|+..
T Consensus       243 n~l~~--------~~~~~d~~~~~---~~~fD~Iv~NpPfh~g~~-----~~~------------------~~~~~~i~~  288 (343)
T 2pjd_A          243 NGVEG--------EVFASNVFSEV---KGRFDMIISNPPFHDGMQ-----TSL------------------DAAQTLIRG  288 (343)
T ss_dssp             TTCCC--------EEEECSTTTTC---CSCEEEEEECCCCCSSSH-----HHH------------------HHHHHHHHH
T ss_pred             CCCCE--------EEEECCCHHCC---CCCCCEEEECCCCCCCCC-----CCH------------------HHHHHHHHH
T ss_conf             49937--------99964401226---655458998875011444-----688------------------999999999


Q ss_pred             HHHHHCCCCCCCCEEEEECCC
Q ss_conf             999614665788079997389
Q gi|254780836|r  342 LANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       342 ~i~klk~~~~~ggr~aIV~ng  362 (674)
                      ....|++    ||++-||.|.
T Consensus       289 a~~~Lkp----gG~l~iV~n~  305 (343)
T 2pjd_A          289 AVRHLNS----GGELRIVANA  305 (343)
T ss_dssp             HGGGEEE----EEEEEEEEET
T ss_pred             HHHHCCC----CCEEEEEEEC
T ss_conf             9986585----8199999967


No 16 
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.79  E-value=1.3e-08  Score=74.27  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=80.8

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ...|.|.+||||.+......         ..  ...++|.|+++.+.++|+-|+-..++...      -.+..||...-+
T Consensus        50 ~~~vLDlG~G~G~~~l~la~---------~~--~~~v~~vDi~~~~~~~A~~N~~~n~l~~~------v~~~~~D~~~~~  112 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLST---------RT--KAKIVGVEIQERLADMAKRSVAYNQLEDQ------IEIIEYDLKKIT  112 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHT---------TC--CCEEEEECCSHHHHHHHHHHHHHTTCTTT------EEEECSCGGGGG
T ss_pred             CCEEEEEECCCCHHHHHHHH---------CC--CCEEEEEECCHHHHHHHHHHHHHCCCCHH------HEEEEHHHHHHH
T ss_conf             99799972585899999986---------78--98899999989999999999986073301------123300111000


Q ss_pred             -CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             -9866418999816856765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r  286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP  364 (674)
Q Consensus       286 -~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~  364 (674)
                       .++..+||+|++||||-..-   ..............|+...+     +---|+......|++    ||++.++.+-.-
T Consensus       113 ~~~~~~~fD~Iv~NPPy~~~~---~~~~~~~~~~~~~ar~~~~~-----~l~~~i~~a~~lLk~----~G~~~~~~~~~r  180 (259)
T 3lpm_A          113 DLIPKERADIVTCNPPYFATP---DTSLKNTNEHFRIARHEVMC-----TLEDTIRVAASLLKQ----GGKANFVHRPER  180 (259)
T ss_dssp             GTSCTTCEEEEEECCCC--------------------------H-----HHHHHHHHHHHHEEE----EEEEEEEECTTT
T ss_pred             HCCCCCCCCEEEECCCCCCCC---CCCCCCCCHHHHHCCCCCCC-----CHHHHHHHHHHHCCC----CCEEEEEECHHH
T ss_conf             103554254788578853687---30226823555321335544-----899999999986289----968999988899


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             3477644326899999988494
Q gi|254780836|r  365 LFNGRAGSGESEIRRWLLENDL  386 (674)
Q Consensus       365 LF~G~agsGEs~IRk~lie~d~  386 (674)
                               -.++-..+-+.++
T Consensus       181 ---------l~ei~~~~~~~gl  193 (259)
T 3lpm_A          181 ---------LLDIIDIMRKYRL  193 (259)
T ss_dssp             ---------HHHHHHHHHHTTE
T ss_pred             ---------HHHHHHHHHHCCC
T ss_conf             ---------9999999997799


No 17 
>3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.74  E-value=1.1e-07  Score=68.23  Aligned_cols=129  Identities=19%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r  182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI  261 (674)
Q Consensus       182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli  261 (674)
                      .-.+++.+.+..    .+...+....+|.|.+||||.+.....+    .+        ..++|.|+++...++|+.|+-.
T Consensus       214 ~gs~~ll~~l~~----~~~~~~~~g~~VLDlGcG~G~~~~~la~----~~--------~~v~~vD~s~~~l~~a~~~~~~  277 (381)
T 3dmg_A          214 PASLLLLEALQE----RLGPEGVRGRQVLDLGAGYGALTLPLAR----MG--------AEVVGVEDDLASVLSLQKGLEA  277 (381)
T ss_dssp             HHHHHHHHHHHH----HHCTTTTTTCEEEEETCTTSTTHHHHHH----TT--------CEEEEEESBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHCCCCCCCCEEEEEEEECCHHHHHHHH----CC--------CEEECCCCCHHHHHHHHHHHHH
T ss_conf             899999998787----5266689999899996010488897675----19--------8874146999999999999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             08875334566668234754579998664189998168567653100011123442266665357777477065999999
Q gi|254780836|r  262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH  341 (674)
Q Consensus       262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh  341 (674)
                      .+.+..        +..+|... ..+...+||+|++||||-..-..+                    +  .+ .-.|++.
T Consensus       278 ~~~~~~--------~~~~d~~~-~~~~~~~fD~Iv~n~~~h~~~~~~--------------------~--~~-~~~~l~~  325 (381)
T 3dmg_A          278 NALKAQ--------ALHSDVDE-ALTEEARFDIIVTNPPFHVGGAVI--------------------L--DV-AQAFVNV  325 (381)
T ss_dssp             TTCCCE--------EEECSTTT-TSCTTCCEEEEEECCCCCTTCSSC--------------------C--HH-HHHHHHH
T ss_pred             CCCCEE--------EEECCCCC-CCCCCCCEEEEEECCCHHHCCCCC--------------------H--HH-HHHHHHH
T ss_conf             299738--------85301001-446679868999893245334368--------------------8--99-9999999


Q ss_pred             HHHHHCCCCCCCCEEEEECCC
Q ss_conf             999614665788079997389
Q gi|254780836|r  342 LANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       342 ~i~klk~~~~~ggr~aIV~ng  362 (674)
                      +...|||    ||++.+|.|-
T Consensus       326 ~~~~Lkp----GG~l~iv~n~  342 (381)
T 3dmg_A          326 AAARLRP----GGVFFLVSNP  342 (381)
T ss_dssp             HHHHEEE----EEEEEEEECT
T ss_pred             HHHHCCC----CCEEEEEECC
T ss_conf             9987584----8489999738


No 18 
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.73  E-value=2e-08  Score=73.09  Aligned_cols=147  Identities=18%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      -+-||+=..++|+.+...    ...  ....+|.|-|||||-..+...++     +.      ..++|.|++++..++|+
T Consensus       101 VLIPRpeTE~Lve~~~~~----~~~--~~~~~vlDlgtGSG~I~isla~~-----p~------~~V~avDiS~~Al~vA~  163 (284)
T 1nv8_A          101 VFVPRPETEELVELALEL----IRK--YGIKTVADIGTGSGAIGVSVAKF-----SD------AIVFATDVSSKAVEIAR  163 (284)
T ss_dssp             SCCCCTTHHHHHHHHHHH----HHH--HTCCEEEEESCTTSHHHHHHHHH-----SS------CEEEEEESCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH----HHC--CCCCEEEEEECCHHHHHHHHHHH-----HC------CCEEEECCCHHHHHHHH
T ss_conf             412887589999988876----503--78867998604605988767652-----01------45167639799999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC--CCCCCHH
Q ss_conf             99898088753345666682347545799986641899981685676531000111234422666653577--7747706
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG  334 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g--lP~~sdg  334 (674)
                      .|.-.+|.....      .+..||-+........+||+|+|||||=.+   + ..+..      .-+|.+-  |=...||
T Consensus       164 ~Na~~~~~~~~~------~~~~~d~~~~~~~~~~~fDlIVSNPPYI~~---~-~~l~~------~~~~EP~~AL~gg~dG  227 (284)
T 1nv8_A          164 KNAERHGVSDRF------FVRKGEFLEPFKEKFASIEMILSNPPYVKS---S-AHLPK------DVLFEPPEALFGGEDG  227 (284)
T ss_dssp             HHHHHTTCTTSE------EEEESSTTGGGGGGTTTCCEEEECCCCBCG---G-GSCTT------SCCCSCHHHHBCTTTS
T ss_pred             HHHHHCCCCCEE------EEEECCCCCCCCCCCCCEEEEEECCCCCCC---H-HHHHH------HHHCCCHHHHHCCCCH
T ss_conf             999844898629------999632100141126753089967888886---3-33223------5424863987189638


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             59999999996146657880799973
Q gi|254780836|r  335 SMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       335 ~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                       +.|+..++.+.   .+.||.+.+-+
T Consensus       228 -l~~~r~i~~~~---L~~~G~l~~E~  249 (284)
T 1nv8_A          228 -LDFYREFFGRY---DTSGKIVLMEI  249 (284)
T ss_dssp             -CHHHHHHHHHC---CCTTCEEEEEC
T ss_pred             -HHHHHHHHHHH---CCCCCEEEEEE
T ss_conf             -99999999995---66899999998


No 19 
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.70  E-value=9.6e-09  Score=75.12  Aligned_cols=96  Identities=15%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r  179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG  258 (674)
Q Consensus       179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n  258 (674)
                      ||..|++.+++.+..         ..+..+|.|.+||+|++.+....+        .    ..++|.|+++....+|+.|
T Consensus        61 tpe~ia~~ia~~~~~---------~~~~~~vlD~gcG~G~~~~~la~~--------~----~~v~~iD~s~~~i~~a~~n  119 (241)
T 3gdh_A           61 TPEKIAEHIAGRVSQ---------SFKCDVVVDAFCGVGGNTIQFALT--------G----MRVIAIDIDPVKIALARNN  119 (241)
T ss_dssp             CCHHHHHHHHHHHHH---------HSCCSEEEETTCTTSHHHHHHHHT--------T----CEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH---------CCCCCEEEECCCCCCHHHHHHHHC--------C----CEEEEEECCHHHHHHHHHH
T ss_conf             869999999998650---------289998999378736889999967--------9----9899998977888999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             898088753345666682347545799986641899981685676
Q gi|254780836|r  259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~  303 (674)
                      +-..|+...      -++..||.+.-.  ...+||+|++|||++.
T Consensus       120 ~~~~~~~~~------i~~~~~D~~~~~--~~~~~D~i~~~pp~~~  156 (241)
T 3gdh_A          120 AEVYGIADK------IEFICGDFLLLA--SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             HHHTTCGGG------EEEEESCHHHHG--GGCCCSEEEECCCCSS
T ss_pred             HHHCCCCCC------EEEEECCHHHHH--HCCCCEEEEECCCCCC
T ss_conf             998499874------399976486641--4378449998378788


No 20 
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.62  E-value=4.1e-07  Score=64.48  Aligned_cols=101  Identities=8%  Similarity=-0.034  Sum_probs=67.7

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      +.||..+++-...+....        .-.+.+|.|.+||||++|+.+..+      .     ...++|.|+++....+|+
T Consensus       152 ~~~~~~~~~r~~~~~~~~--------~~~g~~vldlg~g~g~~l~~~l~~------~-----~~~V~~vDi~~~~l~~a~  212 (373)
T 2qm3_A          152 YVTPETTVARVILMHTRG--------DLENKDIFVLGDDDLTSIALMLSG------L-----PKRIAVLDIDERLTKFIE  212 (373)
T ss_dssp             CBCHHHHHHHHHHHHHTT--------CSTTCEEEEESCTTCHHHHHHHHT------C-----CSEEEEECSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC--------CCCCCEEEEEECCCHHHHHHHHHC------C-----CCEEEEEECCHHHHHHHH
T ss_conf             144889999999998637--------778997999979924999999976------9-----998999979799999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEECCCCCC
Q ss_conf             9989808875334566668234754579-9986641899981685676
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~-d~~~~~kFD~vlaNPPFg~  303 (674)
                      .|.-..|++.       -.+..||.... +.....+||+|++||||+.
T Consensus       213 ~~a~~~g~~~-------i~~~~~d~~~~~~~~~~~~fD~v~~dpp~~~  253 (373)
T 2qm3_A          213 KAANEIGYED-------IEIFTFDLRKPLPDYALHKFDTFITDPPETL  253 (373)
T ss_dssp             HHHHHHTCCC-------EEEECCCTTSCCCTTTSSCBSEEEECCCSSH
T ss_pred             HHHHHHCCCC-------EEEEECHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             9999819974-------3998530866324540788898998999864


No 21 
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.54  E-value=2.5e-07  Score=65.89  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=71.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH
Q ss_conf             76657536817999999997317840110138776403117665404689999999998531005333225504666678
Q gi|254780836|r  171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE  250 (674)
Q Consensus       171 ~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~  250 (674)
                      +...|=|..-|+.-..+.+++          .+|  .+|+|.+||||||-+.+...      .+     .++.+.|+++.
T Consensus       195 gqktG~flDqr~~R~~~~~~~----------~~g--~~VLDl~~g~G~~si~aa~~------ga-----~~V~~vD~s~~  251 (396)
T 2as0_A          195 GQKTGFFLDQRENRLALEKWV----------QPG--DRVLDVFTYTGGFAIHAAIA------GA-----DEVIGIDKSPR  251 (396)
T ss_dssp             SSSSCCCSTTHHHHHHHGGGC----------CTT--CEEEETTCTTTHHHHHHHHT------TC-----SEEEEEESCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHC----------CCC--CEEEEECCCCCHHHHHHHHC------CC-----CEEEEEECCHH
T ss_conf             541266666788899999751----------589--76988178778889999977------99-----74688718888


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEEEECCCCCC
Q ss_conf             89999999898088753345666682347545---799986641899981685676
Q gi|254780836|r  251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL---~~d~~~~~kFD~vlaNPPFg~  303 (674)
                      ....|+-|+-+.|.....      .+..+|.+   ......+.+||.|+.|||.-.
T Consensus       252 al~~a~~N~~~Ngl~~~~------~~~~~D~~~~l~~~~~~~~~FD~Ii~DpP~~~  301 (396)
T 2as0_A          252 AIETAKENAKLNGVEDRM------KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFV  301 (396)
T ss_dssp             HHHHHHHHHHHTTCGGGE------EEEESCHHHHHHHHHHTTCCEEEEEECCCCSC
T ss_pred             HHHHHHHHHHHCCCCCCC------EEEECCHHHHHHHHHHHCCCCCEEEECCHHHC
T ss_conf             999999999983997455------69966298887888860789987997651211


No 22 
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46
Probab=98.51  E-value=7.7e-08  Score=69.20  Aligned_cols=100  Identities=17%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      -.||--|-..+-+++..    .+  .+  ..+|.|++||||++-++|...        +.    .+.+.|+++....+|+
T Consensus        21 Rpt~~~vre~~f~~l~~----~~--~~--~~~vLDl~~G~G~~~i~a~~~--------ga----~vv~vD~~~~ai~~~~   80 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRL----RY--PR--RGRFLDPFAGSGAVGLEAASE--------GW----EAVLVEKDPEAVRLLK   80 (171)
T ss_dssp             CCCCHHHHHHHHHHHHH----HC--TT--CCEEEEETCSSCHHHHHHHHT--------TC----EEEEECCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHC----CC--CC--CCEEEECCCCHHHHHHHHHHC--------CC----CCCCEECCHHHHHHHH
T ss_conf             96748999999999736----45--79--798999620678999999980--------89----5300606878999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             9989808875334566668234754---57999866418999816856765
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      .|+-..|.+..        +..++.   +......+.+||+|++||||+.+
T Consensus        81 ~N~~~~g~~~~--------v~~~~~d~~~~~~~~~~~~fDlI~~DPPY~~~  123 (171)
T 1ws6_A           81 ENVRRTGLGAR--------VVALPVEVFLPEAKAQGERFTVAFMAPPYAMD  123 (171)
T ss_dssp             HHHHHHTCCCE--------EECSCHHHHHHHHHHTTCCEEEEEECCCTTSC
T ss_pred             HHHHHCCCCCE--------EEEEEHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             87886066555--------99977898755555338855799987998867


No 23 
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.50  E-value=3.7e-07  Score=64.74  Aligned_cols=97  Identities=8%  Similarity=-0.013  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             75368179999--9999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  175 EDFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       175 GeffTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      .-||.||-.-.  .|++++          .|  ..+|+|++||+|.|-+.+..+.       +   ...+|+.|+||.++
T Consensus        99 kvyfs~r~~~Er~ri~~~v----------~~--ge~VlDl~aG~G~~~i~~ak~~-------~---~~~V~aiDinp~av  156 (272)
T 3a27_A           99 KIMWSQGNIEERKRMAFIS----------NE--NEVVVDMFAGIGYFTIPLAKYS-------K---PKLVYAIEKNPTAY  156 (272)
T ss_dssp             TSCCCGGGHHHHHHHHTSC----------CT--TCEEEETTCTTTTTHHHHHHHT-------C---CSEEEEEECCHHHH
T ss_pred             EEEECCCCHHHHHHHHHCC----------CC--CCEEEEECCCCCHHHHHHHHCC-------C---CEEEEEEECCHHHH
T ss_conf             4798898779999987345----------89--9999993786588999987506-------9---50999995999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             99999989808875334566668234754579998664189998168567
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg  302 (674)
                      ..++-|+-+.|+..-       -...||.-.-.  ...+||.|++|||..
T Consensus       157 ~~l~~N~~~N~v~n~-------~~i~~D~r~~~--~~~~fD~Vimn~p~~  197 (272)
T 3a27_A          157 HYLCENIKLNKLNNV-------IPILADNRDVE--LKDVADRVIMGYVHK  197 (272)
T ss_dssp             HHHHHHHHHTTCSSE-------EEEESCGGGCC--CTTCEEEEEECCCSS
T ss_pred             HHHHHHHHHCCCCCE-------EEEECCCCCCC--CCCCCCEEEECCCCC
T ss_conf             999999998499975-------99927765345--578888999789512


No 24 
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.49  E-value=7.9e-07  Score=62.63  Aligned_cols=96  Identities=13%  Similarity=0.072  Sum_probs=63.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      -|.|-|-|-..++|...+          .+  ..+|+|..||||.+.+.+.+    .    .   ...++|.|+++.+..
T Consensus        41 tG~H~tT~l~l~~L~~~~----------~~--~~~VLDlGcGsG~~~~~~ak----~----g---~~~V~~iDis~~al~   97 (205)
T 3grz_A           41 TGNHQTTQLAMLGIERAM----------VK--PLTVADVGTGSGILAIAAHK----L----G---AKSVLATDISDESMT   97 (205)
T ss_dssp             -CCHHHHHHHHHHHHHHC----------SS--CCEEEEETCTTSHHHHHHHH----T----T---CSEEEEEESCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCC----------CC--CCEEEEEECCHHHHHHHHHH----C----C---CCEEEEEECCHHHHH
T ss_conf             998889999999998347----------99--59999995262299999987----5----9---968999989899999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             9999989808875334566668234754579998664189998168567
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg  302 (674)
                      .|+.|.-..|+...       ....++.+..   ...+||+|+||+++.
T Consensus        98 ~A~~N~~~n~~~~~-------~~~~~~~~~~---~~~~fD~Ivani~~~  136 (205)
T 3grz_A           98 AAEENAALNGIYDI-------ALQKTSLLAD---VDGKFDLIVANILAE  136 (205)
T ss_dssp             HHHHHHHHTTCCCC-------EEEESSTTTT---CCSCEEEEEEESCHH
T ss_pred             HHHHHHHHCCCCCE-------EEEECCHHHC---CCCCCCEEEECCCHH
T ss_conf             99999997376676-------8873434440---455568999858788


No 25 
>2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46
Probab=98.46  E-value=8.6e-08  Score=68.90  Aligned_cols=103  Identities=16%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      +---||--|-.-+.++|-..    +     ....|.|.+||||.|.++|...      .+     -.+++.|+|+++..+
T Consensus        10 ~~RPt~~~vre~lfn~L~~~----~-----~g~~vLDl~~GsG~~~iea~~r------~a-----~~v~~ve~~~~a~~~   69 (177)
T 2esr_A           10 ITRPTSDKVRGAIFNMIGPY----F-----NGGRVLDLFAGSGGLAIEAVSR------GM-----SAAVLVEKNRKAQAI   69 (177)
T ss_dssp             --------CHHHHHHHHCSC----C-----CSCEEEEETCTTCHHHHHHHHT------TC-----CEEEEECCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH----C-----CCCEEEECCEEHHHHHHHHHHC------CC-----CCCEEEECHHHHHHH
T ss_conf             87868489999999987755----6-----9897999950379999999973------86-----201678342889998


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             9999898088753345666682347545799986641899981685676
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~  303 (674)
                      ++.|.-..+....      ..|..+|.+.--.....+||+|++||||+.
T Consensus        70 ~~~n~~~~~~~~~------v~ii~~D~~~~l~~~~~~fDiI~~DPPy~~  112 (177)
T 2esr_A           70 IQDNIIMTKAENR------FTLLKMEAERAIDCLTGRFDLVFLDPPYAK  112 (177)
T ss_dssp             HHHHHHTTTCGGG------EEEECSCHHHHHHHBCSCEEEEEECCSSHH
T ss_pred             HHHHHHHHCCCCC------EEEEECCHHHHHHCCCCCCCEEEECCCCCC
T ss_conf             8875765135551------024531155554313467886887997431


No 26 
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.45  E-value=6.7e-07  Score=63.11  Aligned_cols=82  Identities=13%  Similarity=0.117  Sum_probs=54.0

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---C
Q ss_conf             6403117665404689999999998531005333225504666678899999998980887533456666823475---4
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---T  281 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~Gd---T  281 (674)
                      ...++.|-+||||..........    +      ..++.|.|+++++..+|+.|.-..+......      +..++   .
T Consensus        65 ~~~~~lDiGtGsg~I~~~L~~~~----~------~~~~~~~Di~~~al~~A~~N~~~n~l~~~i~------~~~~~~~~~  128 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL----N------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIK------VVKVPQKTL  128 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH----H------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE------EEECCTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHHHHCCCCCEE------EEECCHHHH
T ss_conf             77548995678789999999977----9------9759999899999999999999838765224------565232776


Q ss_pred             CCCC--CCCCCEEEEEEECCCCC
Q ss_conf             5799--98664189998168567
Q gi|254780836|r  282 LSKD--LFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       282 L~~d--~~~~~kFD~vlaNPPFg  302 (674)
                      +.+.  .....+||+|++||||=
T Consensus       129 i~~~~~~~~~~~fD~iv~NPPY~  151 (254)
T 2h00_A          129 LMDALKEESEIIYDFCMCNPPFF  151 (254)
T ss_dssp             STTTSTTCCSCCBSEEEECCCCC
T ss_pred             HHHHHHHHCCCCEEEEEECCCCC
T ss_conf             76666664367654999368555


No 27 
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 2zzm_A*
Probab=98.39  E-value=4.8e-07  Score=64.05  Aligned_cols=93  Identities=13%  Similarity=0.061  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             75368179999--9999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  175 EDFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       175 GeffTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      .-||+||..-.  .|++++          .+  ..+|+|++||+|+|-+.+.        .     ...+++.|+||.+.
T Consensus       175 ~~~f~~~~~~er~ri~~~~----------~~--~~~vlD~f~g~G~~~i~~~--------~-----~~~v~a~d~n~~a~  229 (336)
T 2yx1_A          175 KVYFSPRLGGERARIMKKV----------SL--NDVVVDMFAGVGPFSIACK--------N-----AKKIYAIDINPHAI  229 (336)
T ss_dssp             TSCCCGGGHHHHHHHHHHC----------CT--TCEEEETTCTTSHHHHHTT--------T-----SSEEEEEESCHHHH
T ss_pred             HCEECCCCHHHHHHHHHHC----------CC--CCEEEEECCCCCHHHHHCC--------C-----CCEEEEEECCHHHH
T ss_conf             5662476107888766411----------78--9889996576467665313--------5-----51699997999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             99999989808875334566668234754579998664189998168567
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg  302 (674)
                      .+++-|.-+.++...      -.+..||....    ..+||.|++|||++
T Consensus       230 ~~~~~N~~~N~~~~~------v~~~~~D~~~~----~~~~D~Ii~~~P~~  269 (336)
T 2yx1_A          230 ELLKKNIKLNKLEHK------IIPILSDVREV----DVKGNRVIMNLPKF  269 (336)
T ss_dssp             HHHHHHHHHTTCTTT------EEEEESCGGGC----CCCEEEEEECCTTT
T ss_pred             HHHHHHHHHHCCCCC------EEEEECCHHHC----CCCCCEEEECCHHH
T ss_conf             999999998299875------89995753454----56874999658046


No 28 
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.39  E-value=2.1e-06  Score=59.86  Aligned_cols=96  Identities=13%  Similarity=0.042  Sum_probs=66.0

Q ss_pred             CCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             5368179999--99997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  176 DFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       176 effTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      -+|.||....  .+++++          .|  ..+|+|++||+|+|-+.+..+     +      ...+|+.|+||.++.
T Consensus       106 ~~f~~~~~~er~rl~~~~----------~~--g~~VlDl~aG~G~~~l~~a~~-----~------~~~V~avD~n~~a~~  162 (278)
T 2frn_A          106 IMFSPANVKERVRMAKVA----------KP--DELVVDMFAGIGHLSLPIAVY-----G------KAKVIAIEKDPYTFK  162 (278)
T ss_dssp             SCCCGGGHHHHHHHHHHC----------CT--TCEEEETTCTTTTTHHHHHHH-----T------CCEEEEECCCHHHHH
T ss_pred             CEECCCCHHHHHHHHHHC----------CC--CCEEEECCCCCCHHHHHHHHH-----C------CCEEEEEECCHHHHH
T ss_conf             224587367999999653----------69--988999177051999999997-----4------986999979999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             9999989808875334566668234754579998664189998168567
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg  302 (674)
                      .++.|+-+.|+...      -.+..||...-.  ...+||.|++|+|.+
T Consensus       163 ~~~~N~~~n~~~~~------v~~~~~D~~~~~--~~~~~D~Vim~~p~~  203 (278)
T 2frn_A          163 FLVENIHLNKVEDR------MSAYNMDNRDFP--GENIADRILMGYVVR  203 (278)
T ss_dssp             HHHHHHHHTTCTTT------EEEECSCTTTCC--CCSCEEEEEECCCSS
T ss_pred             HHHHHHHHHCCCCC------EEEEECCHHHHC--CCCCCCEEEECCCCC
T ss_conf             99999998099984------899968199944--666886999899852


No 29 
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.34  E-value=4.9e-06  Score=57.46  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf             27665753681799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r  170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP  249 (674)
Q Consensus       170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~  249 (674)
                      .+.+.|=|.--|+.-+.+..+.           .|  .+|+|.+||||||=+.|...      .+     ..+.+.|+++
T Consensus       198 ~g~ktG~flDqR~~R~~v~~~~-----------~g--~rVLdlf~~tG~~si~Aa~~------GA-----~~V~~vD~s~  253 (396)
T 3c0k_A          198 HGHKTGYYLDQRDSRLATRRYV-----------EN--KRVLNCFSYTGGFAVSALMG------GC-----SQVVSVDTSQ  253 (396)
T ss_dssp             TSSTTSSCGGGHHHHHHHHHHC-----------TT--CEEEEESCTTCSHHHHHHHT------TC-----SEEEEEESCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHC-----------CC--CEEEECCCCCCHHHHHHHHC------CC-----CEEEEEECCH
T ss_conf             4675775530689999999765-----------99--86875388668899999977------99-----7599998989


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCCC
Q ss_conf             88999999989808875334566668234754579---998664189998168567
Q gi|254780836|r  250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~---d~~~~~kFD~vlaNPPFg  302 (674)
                      ...+.|+-|+-+.|.+...+     .+..+|.+.-   -...+.+||.|+.+||.-
T Consensus       254 ~al~~a~~N~~~Ngl~~~~~-----~~i~~d~~~~l~~~~~~~~~fD~IilDPP~f  304 (396)
T 3c0k_A          254 EALDIARQNVELNKLDLSKA-----EFVRDDVFKLLRTYRDRGEKFDVIVMDPPKF  304 (396)
T ss_dssp             HHHHHHHHHHHHTTCCGGGE-----EEEESCHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred             HHHHHHHHHHHHHCCCCCCC-----EEEECCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             99999999999829984345-----7894229999999987535999899878322


No 30 
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.25  E-value=3e-05  Score=52.30  Aligned_cols=148  Identities=14%  Similarity=0.072  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      ..+||  .+.+++++          .||  .+|+|-+||+|.+-+.+..    .+      ....+++.|+|+.....|+
T Consensus         7 ~ls~R--L~~ia~~v----------~~g--~~vlDIG~g~G~l~i~l~~----~~------~~~~viavDi~~~~l~~A~   62 (230)
T 3lec_A            7 QLSKR--LQKVANYV----------PKG--ARLLDVGSDHAYLPIFLLQ----MG------YCDFAIAGEVVNGPYQSAL   62 (230)
T ss_dssp             CCCHH--HHHHHTTS----------CTT--EEEEEETCSTTHHHHHHHH----TT------CEEEEEEEESSHHHHHHHH
T ss_pred             HHHHH--HHHHHHHC----------CCC--CEEEEECCCHHHHHHHHHH----CC------CCCEEEEEECCHHHHHHHH
T ss_conf             59999--99999658----------998--9999952864999999998----39------9987999309999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             99898088753345666682347545799986641899981685676531000111234422666653577774770659
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM  336 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~  336 (674)
                      .|.-..|....      -.++.||.|..........++++++++...-+                               
T Consensus        63 ~n~~~~gl~~~------I~~~~~Dgl~~~~~~e~~d~iiiag~g~~~i~-------------------------------  105 (230)
T 3lec_A           63 KNVSEHGLTSK------IDVRLANGLSAFEEADNIDTITICGMGGRLIA-------------------------------  105 (230)
T ss_dssp             HHHHHTTCTTT------EEEEECSGGGGCCGGGCCCEEEEEEECHHHHH-------------------------------
T ss_pred             HHHHHCCCCCC------EEEEECCCCCCCCCCCCCEEEEECCCCHHHHH-------------------------------
T ss_conf             99998399875------79998875410045554127864287588999-------------------------------


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE--EEEEECCCCCCC
Q ss_conf             999999996146657880799973897134776443268999999884946--888317677655
Q gi|254780836|r  337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFF  399 (674)
Q Consensus       337 lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i--eaII~LP~~lFy  399 (674)
                      -+|......++    .+|+..+-.+          ++...+|+||.+++|-  +=.+....+-||
T Consensus       106 ~Il~~~~~~l~----~~~~liLqp~----------~~~~~lR~~L~~~gf~I~~E~~v~e~~~~Y  156 (230)
T 3lec_A          106 DILNNDIDKLQ----HVKTLVLQPN----------NREDDLRKWLAANDFEIVAEDILTENDKRY  156 (230)
T ss_dssp             HHHHHTGGGGT----TCCEEEEEES----------SCHHHHHHHHHHTTEEEEEEEEEEC--CEE
T ss_pred             HHHHHHHHHCC----CCCEEEEECC----------CCHHHHHHHHHHCCCEEEEEEEEEECCEEE
T ss_conf             99999998648----8987999708----------787999999998799776778888789878


No 31 
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46
Probab=98.25  E-value=1.2e-06  Score=61.38  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r  178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      -|+--|-..+-++|-    ..+   +  ...|.|.+||||.+-++|..+-      +     -.++..|.|..+..+++.
T Consensus        36 Pt~~rvrealFn~L~----~~~---~--~~~vLDLfaGsG~lgiEalsRG------a-----~~v~fVE~~~~a~~~l~~   95 (202)
T 2fpo_A           36 PTTDRVRETLFNWLA----PVI---V--DAQCLDCFAGSGALGLEALSRY------A-----AGATLIEMDRAVSQQLIK   95 (202)
T ss_dssp             --CHHHHHHHHHHHH----HHH---T--TCEEEETTCTTCHHHHHHHHTT------C-----SEEEEECSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH----HHC---C--CCEEEECCCCCCHHHHHHHCCC------C-----CEEEEEEECCCHHHHHHH
T ss_conf             783899999999866----432---8--9869988878558899987079------9-----886899970333567887


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             9898088753345666682347545799986641899981685676
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~  303 (674)
                      |+-..+.+       ...|..+|.+.--...+.+||+|+..|||+.
T Consensus        96 N~~~~~~~-------~~~ii~~d~~~~l~~~~~~fDlIflDPPY~~  134 (202)
T 2fpo_A           96 NLATLKAG-------NARVVNSNAMSFLAQKGTPHNIVFVDPPFRR  134 (202)
T ss_dssp             HHHHTTCC-------SEEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred             HHHHHCCC-------CCEEEECCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             89874635-------5359953245655412776668997699875


No 32 
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.24  E-value=9.1e-06  Score=55.68  Aligned_cols=141  Identities=19%  Similarity=0.230  Sum_probs=92.7

Q ss_pred             CCCCC--CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf             57536--8179999999973178401101387764031176654046899999999985310053332255046666788
Q gi|254780836|r  174 AEDFM--TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET  251 (674)
Q Consensus       174 aGeff--TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t  251 (674)
                      -+..|  |+.++.-++...+          .|++..+|+|-.||||++...+..       .     ..+++|.|++++.
T Consensus        10 ~~~~~~~t~~e~~a~il~~l----------~~~~g~~VLDiGcG~G~~s~~la~-------~-----~~~V~avD~~~~~   67 (192)
T 1l3i_A           10 NPSVPGPTAMEVRCLIMCLA----------EPGKNDVAVDVGCGTGGVTLELAG-------R-----VRRVYAIDRNPEA   67 (192)
T ss_dssp             CTTSCCCCCHHHHHHHHHHH----------CCCTTCEEEEESCTTSHHHHHHHT-------T-----SSEEEEEESCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHC----------CCCCCCEEEEEECCHHHHHHHHHH-------C-----CCEEEEEECCCHH
T ss_conf             79989978699999999866----------999979999983870499999984-------3-----9999999906288


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999998980887533456666823475457999866418999816856765310001112344226666535777747
Q gi|254780836|r  252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI  331 (674)
Q Consensus       252 yaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~  331 (674)
                      .++|+.|+--.|...+      -.+..||.... ......||.|+++...+. |                          
T Consensus        68 ~~~a~~~~~~~gl~~~------v~~~~gd~~~~-~~~~~~~D~v~~~~~~~~-~--------------------------  113 (192)
T 1l3i_A           68 ISTTEMNLQRHGLGDN------VTLMEGDAPEA-LCKIPDIDIAVVGGSGGE-L--------------------------  113 (192)
T ss_dssp             HHHHHHHHHHTTCCTT------EEEEESCHHHH-HTTSCCEEEEEESCCTTC-H--------------------------
T ss_pred             HHHHHHHHHHCCCCCC------EEEEECCHHHC-CCCCCCCCEEEEECCHHH-H--------------------------
T ss_conf             9999999998099988------89998862105-300088688999180346-9--------------------------


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             7065999999999614665788079997389713477644326899999988494
Q gi|254780836|r  332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL  386 (674)
Q Consensus       332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~  386 (674)
                          --++++....|+|    |||+.+..   ++.     .....+++++-+.++
T Consensus       114 ----~~~l~~~~~~Lkp----GG~lv~~~---~~~-----e~~~~~~~~~~~~g~  152 (192)
T 1l3i_A          114 ----QEILRIIKDKLKP----GGRIIVTA---ILL-----ETKFEAMECLRDLGF  152 (192)
T ss_dssp             ----HHHHHHHHHTEEE----EEEEEEEE---CBH-----HHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHHCCC----CCEEEEEE---ECC-----CCHHHHHHHHHHCCC
T ss_conf             ----9999999996799----98899997---230-----659999999997799


No 33 
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15}
Probab=98.22  E-value=5.2e-05  Score=50.76  Aligned_cols=148  Identities=11%  Similarity=0.026  Sum_probs=92.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      ..+.-.|+++|--++..-|          .+.+..+|+|-.||||.+-+.+..    ..+      ...++|.|++++..
T Consensus        18 ~~~~~~tk~evra~~l~~L----------~l~pg~~VLDiG~GsG~la~~~a~----~~~------~~~V~aiD~~~~~~   77 (204)
T 3e05_A           18 TAKKLITKQEVRAVTLSKL----------RLQDDLVMWDIGAGSASVSIEASN----LMP------NGRIFALERNPQYL   77 (204)
T ss_dssp             CCTTTSCCHHHHHHHHHHT----------TCCTTCEEEEETCTTCHHHHHHHH----HCT------TSEEEEEECCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHC----------CCCCCCEEEEEEEEHHHHHHHHHH----HCC------CCEEEEEECCHHHH
T ss_conf             3997866899999999860----------999939999983107899999999----789------96799994999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS  332 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s  332 (674)
                      +.++.|+--.|...-       .+..|+... .......||.|+.+.+.+.-                            
T Consensus        78 ~~a~~n~~~~g~~~~-------~~~~g~~~~-~~~~~~~~D~i~i~~~~~~~----------------------------  121 (204)
T 3e05_A           78 GFIRDNLKKFVARNV-------TLVEAFAPE-GLDDLPDPDRVFIGGSGGML----------------------------  121 (204)
T ss_dssp             HHHHHHHHHHTCTTE-------EEEECCTTT-TCTTSCCCSEEEESCCTTCH----------------------------
T ss_pred             HHHHHHHHHCCCCEE-------EEEECCCCC-CCCCCCCCCEEEECCCCCCH----------------------------
T ss_conf             999999998199858-------997345323-45435787699990655235----------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             06599999999961466578807999738971347764432689999998849468883
Q gi|254780836|r  333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV  391 (674)
Q Consensus       333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII  391 (674)
                         -.++.++...|+|    |||+++...  .+      .+...+++++=+.++.--++
T Consensus       122 ---~~~l~~~~~~L~p----GG~lvi~~~--~~------e~~~~~~~~l~~~g~~~e~~  165 (204)
T 3e05_A          122 ---EEIIDAVDRRLKS----EGVIVLNAV--TL------DTLTKAVEFLEDHGYMVEVA  165 (204)
T ss_dssp             ---HHHHHHHHHHCCT----TCEEEEEEC--BH------HHHHHHHHHHHHTTCEEEEE
T ss_pred             ---HHHHHHHHHHCCC----CCEEEEEEE--CH------HHHHHHHHHHHHCCCCEEEE
T ss_conf             ---8999999985489----989999963--48------78999999999779938999


No 34 
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.22  E-value=8.2e-05  Score=49.48  Aligned_cols=116  Identities=15%  Similarity=0.090  Sum_probs=74.4

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      +.+|.|-+||||++.....+++.         ....++|.|+++....+|+.|.-..|.....      .+..+|.-.-+
T Consensus        23 G~~VLDlGcG~G~~t~~la~~~~---------~~~~V~giDis~~~l~~ar~~~~~~g~~~~v------~~~~~d~~~~~   87 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVG---------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRV------TLIKDGHQNMD   87 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHC---------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGE------EEECSCGGGGG
T ss_pred             CCEEEEEEEECCHHHHHHHHHHC---------CCEEEEEEECCHHHHHHHHHHHHHCCCCCCE------EEEECCHHHHH
T ss_conf             99999992048899999999838---------9819999973889989999999983998778------99985867601


Q ss_pred             CCCCCEEEEEEECCCCCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             9866418999816856765-31000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~-Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      .+....+|.+..++||-.. ++..                    .....-...+++.+...|++    ||+++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~lkp----gG~l~~~~  139 (197)
T 3eey_A           88 KYIDCPVKAVMFNLGYLPSGDHSI--------------------STRPETTIQALSKAMELLVT----GGIITVVI  139 (197)
T ss_dssp             GTCCSCEEEEEEEESBCTTSCTTC--------------------BCCHHHHHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             HCCCCCCCEEEEEEEECCCCCHHH--------------------CCCHHHHHHHHHHHHHHHCC----CCEEEEEE
T ss_conf             215776430465255325440220--------------------16857799999999997289----97899999


No 35 
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.21  E-value=5.2e-06  Score=57.28  Aligned_cols=100  Identities=13%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH
Q ss_conf             76657536817999999997317840110138776403117665404689999999998531005333225504666678
Q gi|254780836|r  171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE  250 (674)
Q Consensus       171 ~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~  250 (674)
                      +...|-|.--|+ .++.+..             ....+|+|.|||||||-+.+...       .     -.++|.|+++.
T Consensus       189 g~ktG~flDqr~-~r~~~~~-------------~~g~~VLDl~~g~G~~s~~~a~~-------~-----~~V~~vD~s~~  242 (382)
T 1wxx_A          189 GQKTGAYLDQRE-NRLYMER-------------FRGERALDVFSYAGGFALHLALG-------F-----REVVAVDSSAE  242 (382)
T ss_dssp             TSCCCCCGGGHH-HHHHGGG-------------CCEEEEEEETCTTTHHHHHHHHH-------E-----EEEEEEESCHH
T ss_pred             CCCCCCHHHHHH-HHHHHHH-------------HCCCEEEECCCCCCHHHHHHHHC-------C-----CCEEECCCCHH
T ss_conf             355672156666-5889876-------------26980410467787799999846-------7-----72672046399


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEECCCCCC
Q ss_conf             899999998980887533456666823475457---99986641899981685676
Q gi|254780836|r  251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~---~d~~~~~kFD~vlaNPPFg~  303 (674)
                      ....|+.|+-+.|++.       .....||.+.   .-...+.+||.|+.+||...
T Consensus       243 al~~a~~n~~~ng~~~-------~~~~~~D~~~~l~~~~~~~~~fD~VilDpP~~~  291 (382)
T 1wxx_A          243 ALRRAEENARLNGLGN-------VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFA  291 (382)
T ss_dssp             HHHHHHHHHHHTTCTT-------EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC
T ss_pred             HHHHHHHHHHHCCCCC-------CEEEECCHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             9999999999728688-------667860177777777862679986998272115


No 36 
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.21  E-value=6.9e-05  Score=49.94  Aligned_cols=170  Identities=14%  Similarity=0.114  Sum_probs=94.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH
Q ss_conf             76657536817999999997317840110138776403117665404689999999998531005333225504666678
Q gi|254780836|r  171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE  250 (674)
Q Consensus       171 ~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~  250 (674)
                      |.+-|. -|-+++..++...|          .|.+..+|.|-.||||++-+.+...    .      ....++|.|+++.
T Consensus         2 ~~~~g~-~tk~e~ra~~l~~L----------~~~pg~~vLDiGcG~G~~a~~~a~~----~------~~~~V~avD~~~~   60 (178)
T 3hm2_A            2 NATDGQ-LTKQHVRALAISAL----------APKPHETLWDIGGGSGSIAIEWLRS----T------PQTTAVCFEISEE   60 (178)
T ss_dssp             ----CC-SHHHHHHHHHHHHH----------CCCTTEEEEEESTTTTHHHHHHHTT----S------SSEEEEEECSCHH
T ss_pred             CCCCCC-CCHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHH----C------CCCEEEEEECCHH
T ss_conf             887776-55899999999855----------9999799999766888899999996----8------9776988508999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             89999999898088753345666682347545799986641899981685676531000111234422666653577774
Q gi|254780836|r  251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK  330 (674)
Q Consensus       251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~  330 (674)
                      ..+.++.|.--.+...       -.+..||-..........||.++..++-.                         +| 
T Consensus        61 ~~~~a~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------------------------~~-  107 (178)
T 3hm2_A           61 RRERILSNAINLGVSD-------RIAVQQGAPRAFDDVPDNPDVIFIGGGLT-------------------------AP-  107 (178)
T ss_dssp             HHHHHHHHHHTTTCTT-------SEEEECCTTGGGGGCCSCCSEEEECC-TT-------------------------CT-
T ss_pred             HHHHHHHHHHHHCCCC-------EEEEEECCCHHCCCCCCCCCEEEECCCCC-------------------------HH-
T ss_conf             9999999999819997-------89999436200224678888999927335-------------------------79-


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC--EEEEEE--CCCCCC--CCCCCC
Q ss_conf             77065999999999614665788079997389713477644326899999988494--688831--767765--578861
Q gi|254780836|r  331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVA--LPTDLF--FRTNIA  404 (674)
Q Consensus       331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~--ieaII~--LP~~lF--ynTgI~  404 (674)
                            .+|+.+...|+|    |||+++...     +-+   ++..+++++-+.++  +..-++  .|-.-+  +...=|
T Consensus       108 ------~~l~~~~~~Lkp----GG~lvi~~~-----~~e---~~~~~~~~~~~~g~~l~~~~v~r~~~~g~~~~~~~~~P  169 (178)
T 3hm2_A          108 ------GVFAAAWKRLPV----GGRLVANAV-----TVE---SEQMLWALRKQFGGTISSFAISHEHTVGSFITMKPALP  169 (178)
T ss_dssp             ------THHHHHHHTCCT----TCEEEEEEC-----SHH---HHHHHHHHHHHHCCEEEEEEEEEEEECSSCEEEEECCC
T ss_pred             ------HHHHHHHHHCCC----CEEEEEEEC-----CHH---HHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             ------999999984799----839999805-----886---89999999997499899999887478056451347899


Q ss_pred             EEEEEEEC
Q ss_conf             69999946
Q gi|254780836|r  405 TYLWILSN  412 (674)
Q Consensus       405 t~Iwil~k  412 (674)
                      .+||...|
T Consensus       170 v~~~~~~k  177 (178)
T 3hm2_A          170 VHQWTVVK  177 (178)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
T ss_conf             89999997


No 37 
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46
Probab=98.20  E-value=1.6e-06  Score=60.66  Aligned_cols=101  Identities=15%  Similarity=0.077  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      --|+--|-.-|-++|-..       .+  ...|+|.+||||++-++|...      .+     -++++.|.|+.+..+++
T Consensus        25 RPt~~~vrealfn~l~~~-------~~--~~~vLDlf~GsG~~~~ea~sr------Ga-----~~v~~Ve~~~~~~~~~~   84 (187)
T 2fhp_A           25 RPTTDKVKESIFNMIGPY-------FD--GGMALDLYSGSGGLAIEAVSR------GM-----DKSICIEKNFAALKVIK   84 (187)
T ss_dssp             CCCCHHHHHHHHHHHCSC-------CS--SCEEEETTCTTCHHHHHHHHT------TC-----SEEEEEESCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH-------CC--CCEEEECCCCCCHHHHHHHHC------CC-----CEEEEEEECHHHHHHHH
T ss_conf             878189999999986511-------59--998999888737899999975------88-----83589994246776766


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCCCC
Q ss_conf             9989808875334566668234754579---9986641899981685676
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~---d~~~~~kFD~vlaNPPFg~  303 (674)
                      .|+-..+....      ..+..+|.+.-   -.-.+.+||+|+.+|||+.
T Consensus        85 ~N~~~~~~~~~------~~i~~~d~~~~l~~~~~~~~~fDlIflDPPY~~  128 (187)
T 2fhp_A           85 ENIAITKEPEK------FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK  128 (187)
T ss_dssp             HHHHHHTCGGG------EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG
T ss_pred             HHHHHCCCCCC------CEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             55542024564------178861078887764302676535997898753


No 38 
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus}
Probab=98.19  E-value=5.5e-05  Score=50.57  Aligned_cols=159  Identities=13%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      +..+|.|-+||||++.....    .   .     ...+||.|++++..++|+.|+--.|++.-       .+..++.-.-
T Consensus        22 ~~~~VLD~gcG~G~~t~~LA----~---~-----~~~V~aiDis~~al~~a~~n~~~~~l~nv-------~~~~~~~~~l   82 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLA----G---L-----SKKVYAFDVQEQALGKTSQRLSDLGIENT-------ELILDGHENL   82 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHH----T---T-----SSEEEEEESCHHHHHHHHHHHHHHTCCCE-------EEEESCGGGG
T ss_pred             CCCEEEEEEEECCHHHHHHH----H---C-----CCEEEECCCCHHHHHHHHHHHHHCCCCCE-------EEEECCHHHH
T ss_conf             99999999638889999998----2---6-----99899758987888789999998299848-------9999367775


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             99866418999816856765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP  364 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~  364 (674)
                      +......||.++.|+|+-..  .+.....                 .....+..|+.+...|++    ||++.++..-  
T Consensus        83 ~~~~~~~~~~v~~~~~~~~~--~~~~~~~-----------------~~~~~~~~L~~~~~~Lkp----gG~l~i~~~~--  137 (185)
T 3mti_A           83 DHYVREPIRAAIFNLGYLPS--ADKSVIT-----------------KPHTTLEAIEKILDRLEV----GGRLAIMIYY--  137 (185)
T ss_dssp             GGTCCSCEEEEEEEEC------------------------------CHHHHHHHHHHHHHHEEE----EEEEEEEEC---
T ss_pred             HHHCCCCCCEEEEECCCCCC--CCCCCCC-----------------CHHHHHHHHHHHHHHHCC----CCEEEEEEEC--
T ss_conf             55135666569995265677--8731135-----------------607789999999998389----9889999937--


Q ss_pred             CCCCCCCCCHH-HHHHHHHH--CCCEEEEEECCCCCCCC-CCCCEEEEEEECC
Q ss_conf             34776443268-99999988--49468883176776557-8861699999468
Q gi|254780836|r  365 LFNGRAGSGES-EIRRWLLE--NDLIEAIVALPTDLFFR-TNIATYLWILSNR  413 (674)
Q Consensus       365 LF~G~agsGEs-~IRk~lie--~d~ieaII~LP~~lFyn-TgI~t~Iwil~k~  413 (674)
                      -+  ..|..|. .|++|+-+  ..-.+ |+..   -|+| ..-|.+++++.|-
T Consensus       138 ~~--~~~~~e~~~i~~~l~~l~~~~f~-v~~~---~~~n~~~~~p~lv~~~k~  184 (185)
T 3mti_A          138 GH--DGGDMEKDAVLEYVIGLDQRVFT-AMLY---QPLNQINTPPFLVMLEKL  184 (185)
T ss_dssp             -------CHHHHHHHHHHHHSCTTTEE-EEEE---EESSCSSCCCEEEEEEEC
T ss_pred             CC--CCCHHHHHHHHHHHHHCCCCCEE-EEEE---EECCCCCCCCEEEEEEEC
T ss_conf             99--98789999999999857958639-9999---852688999789999976


No 39 
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI- 2, protein structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.17  E-value=4.4e-06  Score=57.76  Aligned_cols=107  Identities=12%  Similarity=0.054  Sum_probs=74.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf             27665753681799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r  170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP  249 (674)
Q Consensus       170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~  249 (674)
                      .+.+-|=|+.-|+.-+.+.+++-         ......+|.|-+||||||-+.|...      .+      .+.+.|.++
T Consensus       127 ~g~ktG~FlDqr~nr~~l~~~~~---------~~~kg~rVLdlF~ytG~~sl~aa~~------GA------~V~~VD~s~  185 (332)
T 2igt_A          127 AFRHVGVFPEQIVHWEWLKNAVE---------TADRPLKVLNLFGYTGVASLVAAAA------GA------EVTHVDASK  185 (332)
T ss_dssp             SSSCCSCCGGGHHHHHHHHHHHH---------HSSSCCEEEEETCTTCHHHHHHHHT------TC------EEEEECSCH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHH---------HCCCCCEEEECCCCCCHHHHHHHHC------CC------EEEEEECCH
T ss_conf             78756345210668999999866---------3158975887267777789999978------98------499993879


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEECCC-CC
Q ss_conf             8899999998980887533456666823475457---99986641899981685-67
Q gi|254780836|r  250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPP-FG  302 (674)
Q Consensus       250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~---~d~~~~~kFD~vlaNPP-Fg  302 (674)
                      ...+.|+.|+-+.|.+....     ....+|.+.   .-...+.+||+|+.+|| |+
T Consensus       186 ~al~~a~~N~~lNg~~~~~~-----~~i~~Da~~~l~~~~~~g~~fD~IilDPP~f~  237 (332)
T 2igt_A          186 KAIGWAKENQVLAGLEQAPI-----RWICEDAMKFIQREERRGSTYDIILTDPPKFG  237 (332)
T ss_dssp             HHHHHHHHHHHHHTCTTSCE-----EEECSCHHHHHHHHHHHTCCBSEEEECCCSEE
T ss_pred             HHHHHHHHHHHHHCCCCCCE-----EEEECCHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             99999999999848988858-----99926799999999971899768997896446


No 40 
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51
Probab=98.15  E-value=1.6e-05  Score=54.11  Aligned_cols=104  Identities=13%  Similarity=0.114  Sum_probs=69.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf             27665753681799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r  170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP  249 (674)
Q Consensus       170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~  249 (674)
                      .+.+.|=|.--|+.-+-++..+          .+|  .+|+|.+||||||=+.|...      .+     ..+.+.|+++
T Consensus       189 ~gqkTG~flDqR~nR~~l~~~~----------~~g--~rVLDlfs~tGgfsl~aa~~------gA-----~~V~~vD~s~  245 (385)
T 2b78_A          189 DGLMTGIFLDQRQVRNELINGS----------AAG--KTVLNLFSYTAAFSVAAAMG------GA-----MATTSVDLAK  245 (385)
T ss_dssp             SSSCCSSCGGGHHHHHHHHHTT----------TBT--CEEEEETCTTTHHHHHHHHT------TB-----SEEEEEESCT
T ss_pred             HCCCCCCCHHHHHHHHHHHHHH----------CCC--CCEEEECCCCCHHHHHHHHC------CC-----CEEEECCCCH
T ss_conf             3255688777888799999985----------599--91686367687899999877------99-----5888526769


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEECCCC
Q ss_conf             8899999998980887533456666823475457---999866418999816856
Q gi|254780836|r  250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~---~d~~~~~kFD~vlaNPPF  301 (674)
                      ...++|+.|+-+.|++...+     .+..+|.+.   .-...+.+||.|+.+||-
T Consensus       246 ~a~~~a~~N~~~N~l~~~~~-----~~~~~D~~~~L~~~~~~~~~fD~IilDPP~  295 (385)
T 2b78_A          246 RSRALSLAHFEANHLDMANH-----QLVVMDVFDYFKYARRHHLTYDIIIIDPPS  295 (385)
T ss_dssp             THHHHHHHHHHHTTCCCTTE-----EEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCE-----EEEECCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             99999999899848997644-----777266999999998648988889989863


No 41 
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.08  E-value=4.8e-05  Score=50.95  Aligned_cols=122  Identities=12%  Similarity=0.087  Sum_probs=80.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      .|---|.++.-+ +.++          +..++..|.|-+||||++-......+.   +      ...+||.|++++...+
T Consensus        74 ~qiiyp~d~~~I-i~~l----------~i~pG~rVLd~G~GsG~lt~~lar~~~---~------~G~V~~~D~~~~~~~~  133 (255)
T 3mb5_A           74 PQIVHPKDAALI-VAYA----------GISPGDFIVEAGVGSGALTLFLANIVG---P------EGRVVSYEIREDFAKL  133 (255)
T ss_dssp             SCCCCHHHHHHH-HHHT----------TCCTTCEEEEECCTTSHHHHHHHHHHC---T------TSEEEEECSCHHHHHH
T ss_pred             CCCCCHHHHHHH-HHHH----------CCCCCCEEEECCCCCHHHHHHHHHHCC---C------CCEEEEECCCHHHHHH
T ss_conf             746588999999-9971----------989899899888662799999997438---8------9779983499999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             99998980887533456666823475457999866418999816856765310001112344226666535777747706
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG  334 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg  334 (674)
                      |+.|+-..|....      -.+..+|...  .+....||.|+.++|=  +|                             
T Consensus       134 A~~n~~~~gl~~~------v~~~~~D~~~--~~~~~~~D~V~ld~p~--p~-----------------------------  174 (255)
T 3mb5_A          134 AWENIKWAGFDDR------VTIKLKDIYE--GIEEENVDHVILDLPQ--PE-----------------------------  174 (255)
T ss_dssp             HHHHHHHHTCTTT------EEEECSCGGG--CCCCCSEEEEEECSSC--GG-----------------------------
T ss_pred             HHHHHHHCCCCEE------EEEEECCHHC--CCCCCCCCEEEEECCC--HH-----------------------------
T ss_conf             9999997199814------9999461103--5555656579996685--67-----------------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             599999999961466578807999738
Q gi|254780836|r  335 SMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       335 ~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                        ..+-|+...|||    ||++++..|
T Consensus       175 --~~l~~~~~~Lkp----GG~lv~~~p  195 (255)
T 3mb5_A          175 --RVVEHAAKALKP----GGFFVAYTP  195 (255)
T ss_dssp             --GGHHHHHHHEEE----EEEEEEEES
T ss_pred             --HHHHHHHHHCCC----CCEEEEEEC
T ss_conf             --899999985689----988999939


No 42 
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.03  E-value=6.6e-05  Score=50.10  Aligned_cols=120  Identities=12%  Similarity=0.093  Sum_probs=75.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-+||+|-+-+.+.+    .+      ...+++|.|+++.....|+.|+-..|+...      -.+..||-+....
T Consensus        17 ~~ilDiG~g~G~~~~~l~~----~~------~~~~v~avDi~~~~l~~a~~n~~~~~l~~~------i~~~~~D~~~~~~   80 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVE----RG------QIKSAIAGEVVEGPYQSAVKNVEAHGLKEK------IQVRLANGLAAFE   80 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHH----TT------SEEEEEEEESSHHHHHHHHHHHHHTTCTTT------EEEEECSGGGGCC
T ss_pred             CEEEEECCCHHHHHHHHHH----CC------CCCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEEEECCCCHHHH
T ss_conf             9899961856999999998----09------998899710999999999999998299987------7999887413220


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973897134
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF  366 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF  366 (674)
                       ....||.++..++.+-                                  .+..+++........+|+..+..+     
T Consensus        81 -~~~~~d~iviag~g~~----------------------------------~i~~il~~~~~~l~~~g~liL~p~-----  120 (225)
T 3kr9_A           81 -ETDQVSVITIAGMGGR----------------------------------LIARILEEGLGKLANVERLILQPN-----  120 (225)
T ss_dssp             -GGGCCCEEEEEEECHH----------------------------------HHHHHHHHTGGGCTTCCEEEEEES-----
T ss_pred             -CCCCCCHHHCCCCCHH----------------------------------HHHHHHHHHHHHCCCCCEEEEECC-----
T ss_conf             -3466772105387789----------------------------------999999988997188998999779-----


Q ss_pred             CCCCCCCHHHHHHHHHHCCCE
Q ss_conf             776443268999999884946
Q gi|254780836|r  367 NGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       367 ~G~agsGEs~IRk~lie~d~i  387 (674)
                           +....+|+||.++++-
T Consensus       121 -----~~~~~lR~~L~~~g~~  136 (225)
T 3kr9_A          121 -----NREDDLRIWLQDHGFQ  136 (225)
T ss_dssp             -----SCHHHHHHHHHHTTEE
T ss_pred             -----CCHHHHHHHHHHCCCE
T ss_conf             -----8879999999988995


No 43 
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.01  E-value=8.5e-05  Score=49.36  Aligned_cols=126  Identities=16%  Similarity=0.105  Sum_probs=78.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             53681799999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r  176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC  255 (674)
Q Consensus       176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa  255 (674)
                      -.|+| +.+.+++++.           +++..+|.|-+||||.+.....++.   .      ...+++|.|+++...+.+
T Consensus        19 p~y~~-~~~~~l~~~~-----------~~~~~~VLDiGCGtG~~t~~la~~~---~------~~~~V~gvD~S~~mi~~a   77 (299)
T 3g5t_A           19 PSYPS-DFYKMIDEYH-----------DGERKLLVDVGCGPGTATLQMAQEL---K------PFEQIIGSDLSATMIKTA   77 (299)
T ss_dssp             CCCCH-HHHHHHHHHC-----------CSCCSEEEEETCTTTHHHHHHHHHS---S------CCSEEEEEESCHHHHHHH
T ss_pred             CCCHH-HHHHHHHHCC-----------CCCCCEEEEECCCCCHHHHHHHHHC---C------CCCEEEEEECCHHHHHHH
T ss_conf             98419-9999999517-----------7899969998260889999999964---9------998799985988999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99989808875334566668234754-----5799986641899981685676531000111234422666653577774
Q gi|254780836|r  256 VAGMLIRRLESDPRRDLSKNIQQGST-----LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK  330 (674)
Q Consensus       256 k~nMli~g~~~d~~~~~~~NI~~GdT-----L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~  330 (674)
                      +...--.+.....     -+...||-     .....+++..||+|+++--+  .|- +.                     
T Consensus        78 ~~~~~~~~~~~~~-----v~~~~~dae~~~~~~~~~~~~~~fD~V~~~~~~--h~~-d~---------------------  128 (299)
T 3g5t_A           78 EVIKEGSPDTYKN-----VSFKISSSDDFKFLGADSVDKQKIDMITAVECA--HWF-DF---------------------  128 (299)
T ss_dssp             HHHHHHCC-CCTT-----EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCG--GGS-CH---------------------
T ss_pred             HHHHHHCCCCCCE-----EEEEEECHHHCCCCCCCCCCCCCCCEEEEECCE--ECC-CH---------------------
T ss_conf             9999863667532-----468983377654421234665565478870036--315-61---------------------


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             770659999999996146657880799973
Q gi|254780836|r  331 ISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                           -.+++.+-..|||    ||++++..
T Consensus       129 -----~~~l~e~~r~Lkp----gG~l~i~~  149 (299)
T 3g5t_A          129 -----EKFQRSAYANLRK----DGTIAIWG  149 (299)
T ss_dssp             -----HHHHHHHHHHEEE----EEEEEEEE
T ss_pred             -----HHHHHHHHHHHHC----CCEEEEEE
T ss_conf             -----7899999999523----99899997


No 44 
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.01  E-value=7.5e-06  Score=56.25  Aligned_cols=136  Identities=18%  Similarity=0.162  Sum_probs=88.7

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      -|.|-|-|-.+++|.+.+          .||  .+|.|..||||-+.+.+.+    .    +    ..++|.|+++....
T Consensus       101 TG~H~TT~l~l~~l~~~~----------~~g--~~VLDvGcGsGiLsi~aak----~----G----~~V~aiDid~~av~  156 (254)
T 2nxc_A          101 TGHHETTRLALKALARHL----------RPG--DKVLDLGTGSGVLAIAAEK----L----G----GKALGVDIDPMVLP  156 (254)
T ss_dssp             -CCSHHHHHHHHHHHHHC----------CTT--CEEEEETCTTSHHHHHHHH----T----T----CEEEEEESCGGGHH
T ss_pred             CCCCHHHHHHHHHHHHHC----------CCC--CEEEEECCCCCHHHHHHHH----C----C----CEEEEEECCHHHHH
T ss_conf             999889999999998417----------997--9899971777888999984----5----9----98999988727889


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             99999898088753345666682347545799986641899981685676531000111234422666653577774770
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD  333 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd  333 (674)
                      .|+.|.-..|++.        .+..||...  ..+..+||+|++|-.+..        +                     
T Consensus       157 ~a~~N~~~N~v~~--------~~~~~~~~~--~~~~~~fDlIvaNi~~~~--------l---------------------  197 (254)
T 2nxc_A          157 QAEANAKRNGVRP--------RFLEGSLEA--ALPFGPFDLLVANLYAEL--------H---------------------  197 (254)
T ss_dssp             HHHHHHHHTTCCC--------EEEESCHHH--HGGGCCEEEEEEECCHHH--------H---------------------
T ss_pred             HHHHHHHHHCCCE--------EEEECCHHH--CCCCCCCCEEEEEEEHHH--------H---------------------
T ss_conf             9999899709944--------999874345--164578668999810065--------6---------------------


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             65999999999614665788079997389713477644326899999988494
Q gi|254780836|r  334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL  386 (674)
Q Consensus       334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~  386 (674)
                        ..++.++...|+|    ||+..  +.| .| .    +-+..|++.+-+.++
T Consensus       198 --~~l~~~l~~~Lkp----gG~Li--lSG-il-~----~~~~~i~~~~~~~g~  236 (254)
T 2nxc_A          198 --AALAPRYREALVP----GGRAL--LTG-IL-K----DRAPLVREAMAGAGF  236 (254)
T ss_dssp             --HHHHHHHHHHEEE----EEEEE--EEE-EE-G----GGHHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHCCC----CCEEE--EEE-CC-H----HHHHHHHHHHHHCCC
T ss_conf             --8899999985688----85999--995-74-5----209999999998899


No 45 
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5}
Probab=98.00  E-value=9.7e-05  Score=48.97  Aligned_cols=123  Identities=14%  Similarity=0.144  Sum_probs=83.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf             66575368179999999973178401101387764031176654046899999999985310053332255046666788
Q gi|254780836|r  172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET  251 (674)
Q Consensus       172 ~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t  251 (674)
                      +-..|---|.++..+ +..+          +-.++..|+|--||||++.....+.    .        ..+|+.|++++.
T Consensus        69 ~r~~qiiypkD~~~I-i~~l----------~i~pG~rVLEiGtGsG~lt~~La~~----~--------g~v~t~e~~e~~  125 (248)
T 2yvl_A           69 ERKTQIIYPKDSFYI-ALKL----------NLNKEKRVLEFGTGSGALLAVLSEV----A--------GEVWTFEAVEEF  125 (248)
T ss_dssp             CCSSCCCCHHHHHHH-HHHT----------TCCTTCEEEEECCTTSHHHHHHHHH----S--------SEEEEECSCHHH
T ss_pred             CCCCCCCCHHHHHHH-HHHH----------CCCCCCEEEECCCCCHHHHHHHHHC----C--------CEEEEECCCHHH
T ss_conf             888740678999999-9982----------8999997997374311999999860----7--------879998288999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999998980887533456666823475457999866418999816856765310001112344226666535777747
Q gi|254780836|r  252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI  331 (674)
Q Consensus       252 yaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~  331 (674)
                      ..+|+-|+--.|...+      -.+..+| +.+-.++...||.|+.+.|-  +|                          
T Consensus       126 ~~~A~~n~~~~g~~~n------v~~~~~D-~~~~~~~~~~fD~V~ld~p~--p~--------------------------  170 (248)
T 2yvl_A          126 YKTAQKNLKKFNLGKN------VKFFNVD-FKDAEVPEGIFHAAFVDVRE--PW--------------------------  170 (248)
T ss_dssp             HHHHHHHHHHTTCCTT------EEEECSC-TTTSCCCTTCBSEEEECSSC--GG--------------------------
T ss_pred             HHHHHHHHHHHCCCCC------EEEEECC-HHHCCCCCCCCCEEEEECCC--HH--------------------------
T ss_conf             9999998997005770------5999912-22143245878999991787--68--------------------------


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             706599999999961466578807999738
Q gi|254780836|r  332 SDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                           .++.|+...|||    ||++++..|
T Consensus       171 -----~~l~~~~~~LKp----GG~lv~~~P  191 (248)
T 2yvl_A          171 -----HYLEKVHKSLME----GAPVGFLLP  191 (248)
T ss_dssp             -----GGHHHHHHHBCT----TCEEEEEES
T ss_pred             -----HHHHHHHHHCCC----CCEEEEEEC
T ss_conf             -----889999984288----978999929


No 46 
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.00  E-value=5.9e-05  Score=50.42  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=89.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      -..|---|.++..++..+           +..++.+|+|..||||++.....+.+.   +      ...++|.|++++..
T Consensus        91 r~~qiiypkD~~~Ii~~l-----------di~pG~~VLDiG~GsG~lt~~lA~~v~---~------~g~V~~~D~~~~~~  150 (277)
T 1o54_A           91 RRTQIVYPKDSSFIAMML-----------DVKEGDRIIDTGVGSGAMCAVLARAVG---S------SGKVFAYEKREEFA  150 (277)
T ss_dssp             C-CCCCCHHHHHHHHHHT-----------TCCTTCEEEEECCTTSHHHHHHHHHTT---T------TCEEEEECCCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHH-----------CCCCCCEEEECCCCCHHHHHHHHHHCC---C------CEEEEEEECCHHHH
T ss_conf             886226889999999980-----------899999899768882799999998518---9------80999996889999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS  332 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s  332 (674)
                      .+|+.|+--.|....      -.+..+|-.  ..+....||.|+.+.|=  .|                           
T Consensus       151 ~~A~~n~~~~gl~~~------v~~~~~D~~--~~~~~~~~D~V~ld~p~--p~---------------------------  193 (277)
T 1o54_A          151 KLAESNLTKWGLIER------VTIKVRDIS--EGFDEKDVDALFLDVPD--PW---------------------------  193 (277)
T ss_dssp             HHHHHHHHHTTCGGG------EEEECCCGG--GCCSCCSEEEEEECCSC--GG---------------------------
T ss_pred             HHHHHHHHHCCCCCC------EEEEECCCC--CCCCCCCCCEEECCCCC--HH---------------------------
T ss_conf             999998997499876------799968622--44444454102217899--89---------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             06599999999961466578807999738971347764432689999998849468
Q gi|254780836|r  333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE  388 (674)
Q Consensus       333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie  388 (674)
                          .+|.++...|||    ||++++..|-   ++    + =+++-..|-+.++.+
T Consensus       194 ----~~l~~~~~~LKp----GG~lv~~~P~---i~----Q-v~~~~~~L~~~gF~~  233 (277)
T 1o54_A          194 ----NYIDKCWEALKG----GGRFATVCPT---TN----Q-VQETLKKLQELPFIR  233 (277)
T ss_dssp             ----GTHHHHHHHEEE----EEEEEEEESS---HH----H-HHHHHHHHHHSSEEE
T ss_pred             ----HHHHHHHHHCCC----CCEEEEEECC---HH----H-HHHHHHHHHHCCCEE
T ss_conf             ----999999973589----9899999597---89----9-999999999879816


No 47 
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.97  E-value=1.4e-05  Score=54.54  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r  180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM  259 (674)
Q Consensus       180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM  259 (674)
                      |---|||.+++. ...- .+....+ -.|+||||||+|.||+.-.  +.  ..    ...-.++|-++|++...||..|+
T Consensus        29 P~FPVRLAsEif-qRal-~~~~~~~-p~tlwDPCCGsgYlLTvlg--LL--h~----~~l~~v~aSDVd~~al~LA~~NL   97 (250)
T 1o9g_A           29 PAFPVRLATEIF-QRAL-ARLPGDG-PVTLWDPCCGSGYLLTVLG--LL--HR----RSLRQVIASDVDPAPLELAAKNL   97 (250)
T ss_dssp             CCCCHHHHHHHH-HHHH-HTSSCCS-CEEEEETTCTTSHHHHHHH--HH--TG----GGEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHH-HHHH-HHCCCCC-CCEEECCCCCCHHHHHHHH--HH--CH----HHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             885189999999-9999-8636888-7304305777208999998--84--30----57777773358878999988522


Q ss_pred             HHH
Q ss_conf             980
Q gi|254780836|r  260 LIR  262 (674)
Q Consensus       260 li~  262 (674)
                      .|-
T Consensus        98 ~LL  100 (250)
T 1o9g_A           98 ALL  100 (250)
T ss_dssp             HTT
T ss_pred             HHC
T ss_conf             111


No 48 
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=97.88  E-value=0.00012  Score=48.41  Aligned_cols=119  Identities=17%  Similarity=0.059  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r  180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM  259 (674)
Q Consensus       180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM  259 (674)
                      -.+-+-||++.+          .-.+..+|.|-.||||.++....    +   . .    ..+.|.|+++..-+.|+.++
T Consensus         6 ~~~~~~~l~~~~----------~~~pg~rVLDiGCGtG~~~~~la----~---~-~----~~v~gvD~S~~ml~~A~~~~   63 (239)
T 1xxl_A            6 HHHSLGLMIKTA----------ECRAEHRVLDIGAGAGHTALAFS----P---Y-V----QECIGVDATKEMVEVASSFA   63 (239)
T ss_dssp             CHHHHHHHHHHH----------TCCTTCEEEEESCTTSHHHHHHG----G---G-S----SEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----------CCCCCCEEEEECCCCCHHHHHHH----H---C-C----CEEEEEECCHHHHHHHHHHH
T ss_conf             165899999985----------89998989995886859999999----7---0-9----97999979999999999865


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             98088753345666682347545799986641899981685676531000111234422666653577774770659999
Q gi|254780836|r  260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL  339 (674)
Q Consensus       260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl  339 (674)
                      --.+.+.       -.+..+|... -.|++.+||+|+++=  ...|-.+.                          -.++
T Consensus        64 ~~~~~~~-------~~~~~~d~~~-l~~~d~~fD~v~~~~--~l~~~~d~--------------------------~~~l  107 (239)
T 1xxl_A           64 QEKGVEN-------VRFQQGTAES-LPFPDDSFDIITCRY--AAHHFSDV--------------------------RKAV  107 (239)
T ss_dssp             HHHTCCS-------EEEEECBTTB-CCSCTTCEEEEEEES--CGGGCSCH--------------------------HHHH
T ss_pred             HHCCCCC-------CEEEECCCCC-CCCCCCCEEEEHHCC--CHHCCCCH--------------------------HHHH
T ss_conf             4305654-------0001022235-688887365302045--12224689--------------------------9999


Q ss_pred             HHHHHHHCCCCCCCCEEEEEC
Q ss_conf             999996146657880799973
Q gi|254780836|r  340 MHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       340 qh~i~klk~~~~~ggr~aIV~  360 (674)
                      +++...|+|    ||++++.-
T Consensus       108 ~ei~r~Lkp----gG~~~~~~  124 (239)
T 1xxl_A          108 REVARVLKQ----DGRFLLVD  124 (239)
T ss_dssp             HHHHHHEEE----EEEEEEEE
T ss_pred             HHHHHHCCC----CCEEEEEE
T ss_conf             999998083----82999998


No 49 
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13
Probab=97.88  E-value=9.3e-05  Score=49.12  Aligned_cols=122  Identities=10%  Similarity=0.139  Sum_probs=78.6

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      .|--.|.|+..++..+=       +  .|  +.+|+|-.||||++-......+   ++      ...+|+.|++++...+
T Consensus        91 ~qiiypkD~~~Ii~~l~-------i--~P--G~rVLEiG~GsG~lt~~LA~~v---~~------~g~V~~vD~~e~~~~~  150 (275)
T 1yb2_A           91 TQIISEIDASYIIMRCG-------L--RP--GMDILEVGVGSGNMSSYILYAL---NG------KGTLTVVERDEDNLKK  150 (275)
T ss_dssp             ---------------CC-------C--CT--TCEEEEECCTTSHHHHHHHHHH---TT------SSEEEEECSCHHHHHH
T ss_pred             CEECCHHHHHHHHHHCC-------C--CC--CCEEEEECCCCCHHHHHHHHHC---CC------CCEEEEEECCHHHHHH
T ss_conf             60147452999999719-------9--99--7989995771878999999860---89------9589999088999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             99998980887533456666823475457999866418999816856765310001112344226666535777747706
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG  334 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg  334 (674)
                      |+-|+--.+...+      -.+..+|-  .+.+++..||.|+.+.|-  .|                             
T Consensus       151 A~~n~~~~~~~~n------V~~~~~Di--~e~~~~~~fD~V~ld~p~--p~-----------------------------  191 (275)
T 1yb2_A          151 AMDNLSEFYDIGN------VRTSRSDI--ADFISDQMYDAVIADIPD--PW-----------------------------  191 (275)
T ss_dssp             HHHHHHTTSCCTT------EEEECSCT--TTCCCSCCEEEEEECCSC--GG-----------------------------
T ss_pred             HHHHHHHHCCCCC------CHHEEHHH--HHCCCCCCCCCEEEECCC--HH-----------------------------
T ss_conf             9986776315675------21110112--210244423305870568--99-----------------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             599999999961466578807999738
Q gi|254780836|r  335 SMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       335 ~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                        .++.|+...||+    ||++++..|
T Consensus       192 --~~l~~~~~~LKp----GG~lv~~~P  212 (275)
T 1yb2_A          192 --NHVQKIASMMKP----GSVATFYLP  212 (275)
T ss_dssp             --GSHHHHHHTEEE----EEEEEEEES
T ss_pred             --HHHHHHHHHCCC----CCEEEEEEC
T ss_conf             --999999975688----828999989


No 50 
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27}
Probab=97.80  E-value=0.00028  Score=46.02  Aligned_cols=144  Identities=15%  Similarity=0.119  Sum_probs=90.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      -..|---|.++..++..+=       +  .||  .+|+|.-||||++-....+.+..         ...++|.|++++..
T Consensus        75 r~~qiiyp~d~~~Ii~~l~-------i--~pG--~~VLEiG~GsG~lt~~lA~~v~~---------~g~V~~~d~~~~~~  134 (258)
T 2pwy_A           75 RSATPTYPKDASAMVTLLD-------L--APG--MRVLEAGTGSGGLTLFLARAVGE---------KGLVESYEARPHHL  134 (258)
T ss_dssp             CSSCCCCHHHHHHHHHHTT-------C--CTT--CEEEEECCTTSHHHHHHHHHHCT---------TSEEEEEESCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHCC-------C--CCC--CEEEECCCCHHHHHHHHHHHCCC---------CCEEEEEECCHHHH
T ss_conf             9876747799999999719-------8--999--99998777067999999997288---------73899984899999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS  332 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s  332 (674)
                      .+|+.|+--.+...+      -.+..|| +.+..+....||.|+...|=  .|                           
T Consensus       135 ~~A~~n~~~~~~~~~------v~~~~~d-~~~~~~~~~~~d~v~ld~p~--p~---------------------------  178 (258)
T 2pwy_A          135 AQAERNVRAFWQVEN------VRFHLGK-LEEAELEEAAYDGVALDLME--PW---------------------------  178 (258)
T ss_dssp             HHHHHHHHHHCCCCC------EEEEESC-GGGCCCCTTCEEEEEEESSC--GG---------------------------
T ss_pred             HHHHHHHHHCCCCCC------EEEEECC-HHHCCCCCCCCCEEEECCCC--HH---------------------------
T ss_conf             999999998089985------5688365-78855556432389964889--99---------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             06599999999961466578807999738971347764432689999998849468
Q gi|254780836|r  333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE  388 (674)
Q Consensus       333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie  388 (674)
                          .++.|+...|||    ||++++..|.-   +    + -.++.+.+-+.++.+
T Consensus       179 ----~~l~~~~~~LKp----GG~lv~~~p~~---~----Q-~~~~~~~l~~~gf~~  218 (258)
T 2pwy_A          179 ----KVLEKAALALKP----DRFLVAYLPNI---T----Q-VLELVRAAEAHPFRL  218 (258)
T ss_dssp             ----GGHHHHHHHEEE----EEEEEEEESCH---H----H-HHHHHHHHTTTTEEE
T ss_pred             ----HHHHHHHHHCCC----CCEEEEEECCH---H----H-HHHHHHHHHHCCCEE
T ss_conf             ----999999986678----95999993988---9----9-999999999889837


No 51 
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=97.69  E-value=0.00018  Score=47.26  Aligned_cols=110  Identities=16%  Similarity=0.167  Sum_probs=66.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|-+||+||.|....+    .    +   ...++|.|+++.....|+...--.+....      .....+|....+.
T Consensus        66 ~~VLDlGCG~G~~~~~~~~----~----~---~~~v~GiD~S~~~l~~a~~r~~~~~~~~~------~~f~~~d~~~~~~  128 (298)
T 1ri5_A           66 DSVLDLGCGKGGDLLKYER----A----G---IGEYYGVDIAEVSINDARVRARNMKRRFK------VFFRAQDSYGRHM  128 (298)
T ss_dssp             CEEEEETCTTTTTHHHHHH----H----T---CSEEEEEESCHHHHHHHHHHHHTSCCSSE------EEEEESCTTTSCC
T ss_pred             CEEEEECCCCCHHHHHHHH----C----C---CCEEEEECCCHHHHHHHHHHHHHCCCCCC------EEEEECCHHHHCC
T ss_conf             9899963708789999996----6----9---98588758999999999999875288752------3778645655210


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             866418999816856765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      ..+.+||+|+++--+  .|-                      ++..+---.++..+-..|+|    ||+..+..+
T Consensus       129 ~~~~~fD~V~~~~~l--~~~----------------------~~~~~~~~~~l~~i~~~Lkp----gG~~i~t~~  175 (298)
T 1ri5_A          129 DLGKEFDVISSQFSF--HYA----------------------FSTSESLDIAQRNIARHLRP----GGYFIMTVP  175 (298)
T ss_dssp             CCSSCEEEEEEESCG--GGG----------------------GSSHHHHHHHHHHHHHTEEE----EEEEEEEEE
T ss_pred             CCCCCCCEEEECCCE--EEC----------------------CCCHHHHHHHHHHHHHHCCC----CCEEEEEEE
T ss_conf             137775589973654--442----------------------78788999999999986689----988999970


No 52 
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.66  E-value=0.00086  Score=42.80  Aligned_cols=125  Identities=10%  Similarity=0.092  Sum_probs=79.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf             66575368179999999973178401101387764031176654046899999999985310053332255046666788
Q gi|254780836|r  172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET  251 (674)
Q Consensus       172 ~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~t  251 (674)
                      +-..|---|.++..++..+           .-.++.+|.|-.||||++-......+.         ...++|+.|++++.
T Consensus        77 ~r~tqiiypkD~~~Ii~~l-----------di~PG~~VLE~GtGsG~lT~~LAr~vg---------p~G~V~t~D~~~~~  136 (280)
T 1i9g_A           77 PRGPQVIYPKDAAQIVHEG-----------DIFPGARVLEAGAGSGALTLSLLRAVG---------PAGQVISYEQRADH  136 (280)
T ss_dssp             CSCSCCCCHHHHHHHHHHT-----------TCCTTCEEEEECCTTSHHHHHHHHHHC---------TTSEEEEECSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHH-----------CCCCCCEEEEEEECCHHHHHHHHHHHC---------CCEEEEEEECCHHH
T ss_conf             8886355858999999984-----------999999899922761599999999749---------98599999589999


Q ss_pred             HHHHHHHHHH-HCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9999999898-08875334566668--23475457999866418999816856765310001112344226666535777
Q gi|254780836|r  252 HAVCVAGMLI-RRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL  328 (674)
Q Consensus       252 yaIak~nMli-~g~~~d~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl  328 (674)
                      ..+|+-|+-- .+...       .|  +..+|-. +..+++..||.|+.+-|-  +|                       
T Consensus       137 ~~~Ar~n~~~~~~~~~-------~nv~~~~~d~~-~~~~~~~~fD~VflDlp~--P~-----------------------  183 (280)
T 1i9g_A          137 AEHARRNVSGCYGQPP-------DNWRLVVSDLA-DSELPDGSVDRAVLDMLA--PW-----------------------  183 (280)
T ss_dssp             HHHHHHHHHHHHTSCC-------TTEEEECSCGG-GCCCCTTCEEEEEEESSC--GG-----------------------
T ss_pred             HHHHHHHHHHHCCCCC-------CEEEEEECCCC-CCCCCCCCCCEEEECCCC--HH-----------------------
T ss_conf             9999985554315788-------62999955512-255667887868972788--89-----------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             747706599999999961466578807999738
Q gi|254780836|r  329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                              ..+.|+...||+    ||++++..|
T Consensus       184 --------~~l~~~~~~Lkp----GG~lv~~~P  204 (280)
T 1i9g_A          184 --------EVLDAVSRLLVA----GGVLMVYVA  204 (280)
T ss_dssp             --------GGHHHHHHHEEE----EEEEEEEES
T ss_pred             --------HHHHHHHHHCCC----CCEEEEECC
T ss_conf             --------999999984477----989999939


No 53 
>1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41
Probab=97.60  E-value=0.00032  Score=45.58  Aligned_cols=122  Identities=16%  Similarity=0.092  Sum_probs=75.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             53681799999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r  176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC  255 (674)
Q Consensus       176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa  255 (674)
                      .|...+++.+|+-. +          .+....+|.|-.||||.++....    +   . .    -.+.|-|+++..-..|
T Consensus        19 ~h~~~~~~~~l~~~-~----------~l~~~~~VLDiGcG~G~~~~~la----~---~-~----~~v~g~D~s~~~~~~a   75 (260)
T 1vl5_A           19 IHAKGSDLAKLMQI-A----------ALKGNEEVLDVATGGGHVANAFA----P---F-V----KKVVAFDLTEDILKVA   75 (260)
T ss_dssp             ----CCCHHHHHHH-H----------TCCSCCEEEEETCTTCHHHHHHG----G---G-S----SEEEEEESCHHHHHHH
T ss_pred             HHHCCHHHHHHHHH-C----------CCCCCCEEEEECCCCCHHHHHHH----H---H-C----CEEEEEECCHHHHHHH
T ss_conf             56570999999996-0----------89992999995464719999999----7---2-9----9699998999999986


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             99989808875334566668234754579998664189998168567653100011123442266665357777477065
Q gi|254780836|r  256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS  335 (674)
Q Consensus       256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~  335 (674)
                      +-+.--.|...       -.+..||...- .+++..||.|+++==  ..|=.+.                          
T Consensus        76 ~~~~~~~g~~~-------i~~~~~d~~~l-~~~~~sfD~V~~~~~--l~h~~d~--------------------------  119 (260)
T 1vl5_A           76 RAFIEGNGHQQ-------VEYVQGDAEQM-PFTDERFHIVTCRIA--AHHFPNP--------------------------  119 (260)
T ss_dssp             HHHHHHTTCCS-------EEEEECCC-CC-CSCTTCEEEEEEESC--GGGCSCH--------------------------
T ss_pred             HHCCCCCCCCC-------CEEEECCCCCC-CCCCCCEEEEEEECC--HHHCCCH--------------------------
T ss_conf             61222245665-------24775112357-877785579987022--5526899--------------------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             9999999996146657880799973
Q gi|254780836|r  336 MLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       336 ~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      -.++.++...|||    ||+++|+-
T Consensus       120 ~~~l~~~~r~LkP----gG~l~i~~  140 (260)
T 1vl5_A          120 ASFVSEAYRVLKK----GGQLLLVD  140 (260)
T ss_dssp             HHHHHHHHHHEEE----EEEEEEEE
T ss_pred             HHHHHHHHHHCCC----CCEEEEEE
T ss_conf             9999999974285----82899997


No 54 
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=97.58  E-value=0.00098  Score=42.44  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=67.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      +|+|-.||+|.++....++           ....++|.|+++.....|+.+.--.|....      -+...+|-..- .+
T Consensus        46 ~VLDiGcG~G~~~~~la~~-----------~~~~v~giD~s~~~l~~a~~~~~~~~~~~~------i~~~~~d~~~~-~~  107 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ-----------SDFSIRALDFSKHMNEIALKNIADANLNDR------IQIVQGDVHNI-PI  107 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH-----------SEEEEEEEESCHHHHHHHHHHHHHTTCTTT------EEEEECBTTBC-SS
T ss_pred             EEEEECCCCCHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEECCCCCCCC-CC
T ss_conf             3999627585999999953-----------699899997978999999874442166664------00013653356-75


Q ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             6641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      ++..||+|+++-.+-  |-.+                         - -.+++.+...|||    ||++.|.-
T Consensus       108 ~~~~fD~V~~~~~l~--h~~d-------------------------~-~~~l~~~~r~Lkp----gG~l~i~~  148 (219)
T 3dlc_A          108 EDNYADLIVSRGSVF--FWED-------------------------V-ATAFREIYRILKS----GGKTYIGG  148 (219)
T ss_dssp             CTTCEEEEEEESCGG--GCSC-------------------------H-HHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CCCCCCEEEECCHHH--HCCC-------------------------H-HHHHHHHHHHCCC----CCEEEEEE
T ss_conf             445552999844167--4589-------------------------9-9999999998580----83899996


No 55 
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=97.53  E-value=0.00026  Score=46.22  Aligned_cols=142  Identities=15%  Similarity=0.071  Sum_probs=81.7

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      +..+|.|-+||+|.++....+.+.   +      ...++|.|+++.....|+-+.--.+...       -.+..||- .+
T Consensus        37 ~g~~VLDiGcG~G~~~~~la~~~~---~------~~~v~giD~s~~~i~~a~~~~~~~~~~~-------v~~~~~d~-~~   99 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVG---E------KGKVYAIDVQEEMVNYAWEKVNKLGLKN-------VEVLKSEE-NK   99 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHT---T------TCEEEEEESCHHHHHHHHHHHHHHTCTT-------EEEEECBT-TB
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCC---C------CEEEEEEEEHHHHHHHHHHHHHHHHCCE-------EHHHHHHH-HC
T ss_conf             939999987888877999997508---9------8399998500377889999767640221-------00100033-32


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             99866418999816856765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP  364 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~  364 (674)
                      ..+++..||+|+++--+.  |                      +|   |- ..++..+...|||    ||+++|+-....
T Consensus       100 lp~~~~sfD~V~~~~~l~--~----------------------~~---d~-~~~l~ei~rvLkp----gG~l~i~d~~~~  147 (219)
T 3dh0_A          100 IPLPDNTVDFIFMAFTFH--E----------------------LS---EP-LKFLEELKRVAKP----FAYLAIIDWKKE  147 (219)
T ss_dssp             CSSCSSCEEEEEEESCGG--G----------------------CS---SH-HHHHHHHHHHEEE----EEEEEEEEECSS
T ss_pred             CCCCCCCEEEHHHCCHHH--H----------------------CC---CH-HHHHHHHHHHCCC----CEEEEEEECCCC
T ss_conf             775555421357314042--0----------------------77---99-9999999998683----818999988865


Q ss_pred             -CCCCCC---CCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf             -347764---4326899999988494-688831767
Q gi|254780836|r  365 -LFNGRA---GSGESEIRRWLLENDL-IEAIVALPT  395 (674)
Q Consensus       365 -LF~G~a---gsGEs~IRk~lie~d~-ieaII~LP~  395 (674)
                       ...|..   .-.+.++++.|-+.++ +..++.+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  183 (219)
T 3dh0_A          148 ERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK  183 (219)
T ss_dssp             CCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             CCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             466698757658999999999986996988888440


No 56 
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.53  E-value=0.00092  Score=42.60  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             CCCCCCH-HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             5753681-799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFMTP-RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeffTP-R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      .+-||=+ +.+...|++.+.    +.+...+   ..|.|-+||+|.|=..       +.+..     ..++|.|+|+.+.
T Consensus       188 p~sFfQ~N~~~~~~l~~~v~----~~~~~~~---~~vlDLycG~Gt~sl~-------La~~~-----~~V~gvE~~~~av  248 (369)
T 3bt7_A          188 ENSFTQPNAAMNIQMLEWAL----DVTKGSK---GDLLELYCGNGNFSLA-------LARNF-----DRVLATEIAKPSV  248 (369)
T ss_dssp             TTSCCCSBHHHHHHHHHHHH----HHTTTCC---SEEEEESCTTSHHHHH-------HGGGS-----SEEEEECCCHHHH
T ss_pred             CCCEECCCHHHHHHHHHHHH----HHHCCCC---CEEEECCCCCCHHHHH-------HHHCC-----CEEEEEEECHHHH
T ss_conf             99770559899999999999----8715677---6488737896588999-------87308-----5788999702678


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCC---------CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999989808875334566668234754------579---------998664189998168567653100011123442
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGST------LSK---------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK  317 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdT------L~~---------d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~  317 (674)
                      +-|+.|..+.|++.-.       ...||.      ++.         -.....++|.|+.+||=                
T Consensus       249 ~~A~~Na~~n~i~N~~-------f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR----------------  305 (369)
T 3bt7_A          249 AAAQYNIAANHIDNVQ-------IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR----------------  305 (369)
T ss_dssp             HHHHHHHHHTTCCSEE-------EECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT----------------
T ss_pred             HHHHHHHHHCCCCCEE-------EEECCHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCC----------------
T ss_conf             9999999975988718-------99725999998876314566530231012658779989796----------------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf             2666653577774770659999999996146657880799973-89713477644326899999988494-688831767
Q gi|254780836|r  318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPT  395 (674)
Q Consensus       318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~  395 (674)
                            -|.  -    .   .+.-++++  .     -|+.-|- |-++|-        ..+. +| .++| |+.|.  |=
T Consensus       306 ------~Gl--~----~---~v~~~~~~--~-----~~ivYVSCnP~Tla--------rDl~-~L-~~gy~l~~~~--~~  351 (369)
T 3bt7_A          306 ------SGL--D----S---ETEKMVQA--Y-----PRILYISCNPETLC--------KNLE-TL-SQTHKVERLA--LF  351 (369)
T ss_dssp             ------TCC--C----H---HHHHHHTT--S-----SEEEEEESCHHHHH--------HHHH-HH-HHHEEEEEEE--EE
T ss_pred             ------CCC--H----H---HHHHHHHC--C-----CCEEEEECCHHHHH--------HHHH-HH-HCCCEEEEEE--EE
T ss_conf             ------251--8----9---99999856--9-----95999908989999--------9999-98-5485687999--97


Q ss_pred             CCCCCCCCCEEEEEEEC
Q ss_conf             76557886169999946
Q gi|254780836|r  396 DLFFRTNIATYLWILSN  412 (674)
Q Consensus       396 ~lFynTgI~t~Iwil~k  412 (674)
                      +||-.|.===+|-+|.+
T Consensus       352 D~FP~T~HvE~v~~l~r  368 (369)
T 3bt7_A          352 DQFPYTHHMQCGVLLTA  368 (369)
T ss_dssp             CCSTTSSCCEEEEEEEE
T ss_pred             ECCCCCCEEEEEEEEEC
T ss_conf             12899980888999963


No 57 
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=97.51  E-value=0.00049  Score=44.42  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=62.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|-.||||.++..    +..   .     ...++|.|+++.+.++|+.++  .+         .-.+..||.+.-+ 
T Consensus        47 ~~vLDiGcG~G~~~~~----l~~---~-----~~~v~gvD~S~~mi~~a~~k~--~~---------~~~~~~~d~~~~~-  102 (220)
T 3hnr_A           47 GNVLEFGVGTGNLTNK----LLL---A-----GRTVYGIEPSREMRMIAKEKL--PK---------EFSITEGDFLSFE-  102 (220)
T ss_dssp             SEEEEECCTTSHHHHH----HHH---T-----TCEEEEECSCHHHHHHHHHHS--CT---------TCCEESCCSSSCC-
T ss_pred             CEEEEECCCCCHHHHH----HHH---C-----CCEEEEEECCHHHHHHHHHCC--CC---------CCHHHHHHHHHHC-
T ss_conf             9399972878599999----997---7-----998999958357789987425--65---------4103344454440-


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                       ...+||+|+++=  ...|=.+.+                        ...+|+++...|++    ||++.+..
T Consensus       103 -~~~~fD~I~~~~--~l~h~~~~~------------------------~~~~l~~i~~~Lk~----gG~lii~~  145 (220)
T 3hnr_A          103 -VPTSIDTIVSTY--AFHHLTDDE------------------------KNVAIAKYSQLLNK----GGKIVFAD  145 (220)
T ss_dssp             -CCSCCSEEEEES--CGGGSCHHH------------------------HHHHHHHHHHHSCT----TCEEEEEE
T ss_pred             -CCCCCCEEEEHH--HHHHCCCHH------------------------HHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             -177648897634--488599378------------------------99999999998583----84899998


No 58 
>2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=97.48  E-value=8.1e-05  Score=49.49  Aligned_cols=93  Identities=13%  Similarity=0.168  Sum_probs=62.5

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      |--+|+++|-.++...+          .+.+..+|+|-.||||.+-+.+..       ..     .++||.|+++++.++
T Consensus        15 ~~p~Tk~evR~l~l~~L----------~l~~~~~VlDlg~G~G~~si~la~-------~~-----~~V~ave~~~~~i~~   72 (183)
T 2yxd_A           15 GVPITKEEIRAVSIGKL----------NLNKDDVVVDVGCGSGGMTVEIAK-------RC-----KFVYAIDYLDGAIEV   72 (183)
T ss_dssp             TBCCCCHHHHHHHHHHH----------CCCTTCEEEEESCCCSHHHHHHHT-------TS-----SEEEEEECSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHC----------CCCCCCEEEEEECCCCHHHHHHHH-------HC-----CEEEEEECCHHHHHH
T ss_conf             99878799999999976----------998949999961747699999887-------38-----999999798999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             99998980887533456666823475457999866418999816
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN  298 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN  298 (674)
                      ++.|+-..|++.       -.+..||..  +.+++..||.++..
T Consensus        73 a~~n~~~~gv~n-------v~~i~g~a~--~~l~~~~~D~v~ig  107 (183)
T 2yxd_A           73 TKQNLAKFNIKN-------CQIIKGRAE--DVLDKLEFNKAFIG  107 (183)
T ss_dssp             HHHHHHHTTCCS-------EEEEESCHH--HHGGGCCCSEEEEC
T ss_pred             HHHHHHHCCCCC-------EEEEECCHH--HHHHCCCCCEEEEC
T ss_conf             999999768998-------799946456--56406998949989


No 59 
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=97.46  E-value=0.0015  Score=41.15  Aligned_cols=119  Identities=8%  Similarity=0.046  Sum_probs=68.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-+||+|-+-+.+.    ..+      ....++|.|+++.....|+.|+-..|....      -.+..||.+....
T Consensus        23 ~~vlDiGcg~G~l~~~l~----~~~------~~~~V~avDi~~~~l~~A~~n~~~~gl~~~------I~~~~~D~~~~~~   86 (244)
T 3gnl_A           23 ERIADIGSDHAYLPCFAV----KNQ------TASFAIAGEVVDGPFQSAQKQVRSSGLTEQ------IDVRKGNGLAVIE   86 (244)
T ss_dssp             EEEEEETCSTTHHHHHHH----HTT------SEEEEEEEESSHHHHHHHHHHHHHTTCTTT------EEEEECSGGGGCC
T ss_pred             CEEEEECCCHHHHHHHHH----HCC------CCCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEEEECCCHHHHC
T ss_conf             989997186489999999----809------998899963889999999999998299986------7999887504321


Q ss_pred             CCCCEEEE-EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf             86641899-98168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r  287 FTGKRFHY-CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL  365 (674)
Q Consensus       287 ~~~~kFD~-vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L  365 (674)
                       ....||. +++..+.                                   -.+..++.........||+..+-.+    
T Consensus        87 -~~~~~d~~viag~g~-----------------------------------~~i~~il~~~~~~l~~~g~liL~p~----  126 (244)
T 3gnl_A           87 -KKDAIDTIVIAGMGG-----------------------------------TLIRTILEEGAAKLAGVTKLILQPN----  126 (244)
T ss_dssp             -GGGCCCEEEEEEECH-----------------------------------HHHHHHHHHTGGGGTTCCEEEEEES----
T ss_pred             -CCCCCCEEEECCCCH-----------------------------------HHHHHHHHHHHHHHCCCCEEEEECC----
T ss_conf             -557876899848888-----------------------------------9999999998997077987999638----


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             4776443268999999884946
Q gi|254780836|r  366 FNGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       366 F~G~agsGEs~IRk~lie~d~i  387 (674)
                            ++...+|+||.+++|.
T Consensus       127 ------~~~~~lR~~L~~~gf~  142 (244)
T 3gnl_A          127 ------IAAWQLREWSEQNNWL  142 (244)
T ss_dssp             ------SCHHHHHHHHHHHTEE
T ss_pred             ------CCHHHHHHHHHHCCCE
T ss_conf             ------7779999999988797


No 60 
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.45  E-value=0.0002  Score=46.91  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=53.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      .+.|-+||||.|=++|..+      .+     -+++-.|.|..+.++++.|+-.-+....     ...+...|.+.--..
T Consensus        56 ~~LDLFaGSG~lglEAlSR------GA-----~~v~fVE~~~~a~~~l~~N~~~l~~~~~-----~~~~~~~d~~~~l~~  119 (201)
T 2ift_A           56 ECLDGFAGSGSLGFEALSR------QA-----KKVTFLELDKTVANQLKKNLQTLKCSSE-----QAEVINQSSLDFLKQ  119 (201)
T ss_dssp             EEEETTCTTCHHHHHHHHT------TC-----SEEEEECSCHHHHHHHHHHHHHTTCCTT-----TEEEECSCHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHC------CC-----CEEEEEEECHHHHHHHHHHHHHHCCCCC-----HHEEEEHHHHHHHHH
T ss_conf             7998788828989999988------99-----3999997405577899999998386632-----002320345655430


Q ss_pred             --CCCEEEEEEECCCCCCC
Q ss_conf             --66418999816856765
Q gi|254780836|r  288 --TGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       288 --~~~kFD~vlaNPPFg~~  304 (674)
                        ...+||+|.+.|||+.+
T Consensus       120 ~~~~~~fDlIFlDPPY~~~  138 (201)
T 2ift_A          120 PQNQPHFDVVFLDPPFHFN  138 (201)
T ss_dssp             CCSSCCEEEEEECCCSSSC
T ss_pred             CCCCCCCCEEEECCCCCCC
T ss_conf             0246766558857975552


No 61 
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.42  E-value=0.002  Score=40.44  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=77.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      -..|---|.++..++..+=           -.++.+|.|-.||||.+-....+.+.   +      ...+||.|++++.+
T Consensus        84 r~tqiiypkD~a~Il~~l~-----------I~PG~rVLE~GtGsG~lt~~LAr~vg---p------~G~V~~~D~~~~~~  143 (336)
T 2b25_A           84 RGTAITFPKDINMILSMMD-----------INPGDTVLEAGSGSGGMSLFLSKAVG---S------QGRVISFEVRKDHH  143 (336)
T ss_dssp             CSSCCCCHHHHHHHHHHHT-----------CCTTCEEEEECCTTSHHHHHHHHHHC---T------TCEEEEEESSHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHC-----------CCCCCEEEECCCCCCHHHHHHHHHHC---C------CCEEEEECCCHHHH
T ss_conf             8877557168999999858-----------99998899835377799999999628---9------84899843999999


Q ss_pred             HHHHHHHHHHCCCCCC--CCCCCCC--CCCCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             9999998980887533--4566668--234754579-9986641899981685676531000111234422666653577
Q gi|254780836|r  253 AVCVAGMLIRRLESDP--RRDLSKN--IQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG  327 (674)
Q Consensus       253 aIak~nMli~g~~~d~--~~~~~~N--I~~GdTL~~-d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g  327 (674)
                      ++|+.|+--.+.....  ......|  +..+|--.. ..+....||.|+..-|-  +|                      
T Consensus       144 ~~Ar~n~~~~~~~~~~~~~~~~~~~v~~~~~di~~~~~~~~~~~~D~VfLDlp~--P~----------------------  199 (336)
T 2b25_A          144 DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN--PH----------------------  199 (336)
T ss_dssp             HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS--TT----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCCCEEECCCCC--HH----------------------
T ss_conf             999999997432000122113677079997766652355688753331046769--89----------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             7747706599999999961466578807999738
Q gi|254780836|r  328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       328 lP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                               .+|.|+...|||    ||++++-.|
T Consensus       200 ---------~~l~~~~r~LKP----GG~lvvy~P  220 (336)
T 2b25_A          200 ---------VTLPVFYPHLKH----GGVCAVYVV  220 (336)
T ss_dssp             ---------TTHHHHGGGEEE----EEEEEEEES
T ss_pred             ---------HHHHHHHHHCCC----CCEEEEECC
T ss_conf             ---------999999984667----979999939


No 62 
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=97.41  E-value=0.00044  Score=44.73  Aligned_cols=98  Identities=8%  Similarity=-0.065  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      ++.-+...++-.|.+.+          ...+..+|+|-.||||.+.....+.+.    .     ...++|.|++++....
T Consensus        55 ~~tis~P~~~A~ml~~L----------~l~~g~~VLeIGtGtGy~aa~la~~~~----~-----~~~V~~iE~~~~l~~~  115 (317)
T 1dl5_A           55 YSTSSQPSLMALFMEWV----------GLDKGMRVLEIGGGTGYNAAVMSRVVG----E-----KGLVVSVEYSRKICEI  115 (317)
T ss_dssp             EEEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSHHHHHHHHHHC----T-----TCEEEEEESCHHHHHH
T ss_pred             CEEECHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHHHH
T ss_conf             62626799999999971----------899999899917976476899988618----8-----8679999578178999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             999989808875334566668234754579998664189998168
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP  299 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP  299 (674)
                      |+.|+--.|.+.       -.+..||-..- ......||.|+++-
T Consensus       116 A~~~l~~~g~~n-------v~~~~gD~~~g-~~~~~~fD~Iiv~~  152 (317)
T 1dl5_A          116 AKRNVERLGIEN-------VIFVCGDGYYG-VPEFSPYDVIFVTV  152 (317)
T ss_dssp             HHHHHHHTTCCS-------EEEEESCGGGC-CGGGCCEEEEEECS
T ss_pred             HHHHHHHHCCCC-------EEEEECCHHHC-CCCCCCCCEEEECC
T ss_conf             999899735787-------39998955758-87789941999968


No 63 
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.40  E-value=0.0024  Score=39.92  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=65.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|-.||||.+.....++            ...+.|.|+++...+.|+....-++.+.        ....||-.. =.
T Consensus        40 ~rVLDiGCG~G~~~~~la~~------------~~~v~g~D~s~~~l~~ak~~~~~~~~~~--------~~~~~d~~~-l~   98 (227)
T 1ve3_A           40 GKVLDLACGVGGFSFLLEDY------------GFEVVGVDISEDMIRKAREYAKSRESNV--------EFIVGDARK-LS   98 (227)
T ss_dssp             CEEEEETCTTSHHHHHHHHT------------TCEEEEEESCHHHHHHHHHHHHHTTCCC--------EEEECCTTS-CC
T ss_pred             CEEEEECCCCCHHHHHHHHC------------CCEEEEEECCCHHHHHHHHHHHHCCCCC--------CCCCCCCCC-CC
T ss_conf             97999868888999999965------------9989999675046899999887527653--------333465334-88


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      +++..||+|+++=-|  .|                      +|+. | .-.++..+...|+|    ||+.++..
T Consensus        99 ~~~~sfD~V~~~~~l--~~----------------------~~~~-d-~~~~l~~~~r~Lkp----gG~lii~~  142 (227)
T 1ve3_A           99 FEDKTFDYVIFIDSI--VH----------------------FEPL-E-LNQVFKEVRRVLKP----SGKFIMYF  142 (227)
T ss_dssp             SCTTCEEEEEEESCG--GG----------------------CCHH-H-HHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CCCCEEEEEEEEHHH--HH----------------------CCHH-H-HHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             767705899860017--72----------------------9876-8-99999999998380----85899997


No 64 
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A
Probab=97.37  E-value=0.0009  Score=42.66  Aligned_cols=102  Identities=11%  Similarity=0.039  Sum_probs=64.4

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|+|-.||||+++.....       .     ...++|.|+++..-++|+.++  .+...+      -++..+|.-.- 
T Consensus        40 ~~~vLDiGcG~G~~t~~la~-------~-----~~~V~gvD~S~~~l~~a~~r~--~~~~~~------v~~~~~da~~l-   98 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIA-------R-----GYRYIALDADAAMLEVFRQKI--AGVDRK------VQVVQADARAI-   98 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHT-------T-----TCEEEEEESCHHHHHHHHHHT--TTSCTT------EEEEESCTTSC-
T ss_pred             CCEEEEECCCCCHHHHHHHH-------C-----CCEEEEEECCHHHHHHHHHHC--CCCCCC------CHHHHHCCCCC-
T ss_conf             99899951788699999996-------6-----998999989899999987402--101144------10222012223-


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             986641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      .|++..||+|+++--+  .|-.+.                          -..+..+...|||    ||++++..
T Consensus        99 ~~~~~sfD~V~~~~~l--~~~~d~--------------------------~~~l~e~~r~LkP----GG~l~~~~  141 (263)
T 2yqz_A           99 PLPDESVHGVIVVHLW--HLVPDW--------------------------PKVLAEAIRVLKP----GGALLEGW  141 (263)
T ss_dssp             CSCTTCEEEEEEESCG--GGCTTH--------------------------HHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CCCCCCCCEEEECCHH--HHCCCH--------------------------HHHHHHHHHHCCC----CCEEEEEE
T ss_conf             4667610478751227--755899--------------------------9999999998580----83899996


No 65 
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A
Probab=97.36  E-value=0.00099  Score=42.39  Aligned_cols=126  Identities=12%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      .|--.+-+.++++-+..         +....+|.|-.||+|.+.....+.       .  +....+.|.|+++.....|+
T Consensus         3 ~~~n~dyl~fli~~v~k---------~~~~~~ILDiGcG~G~~~~~la~~-------~--~~~~~v~gvD~s~~~l~~a~   64 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWK---------ITKPVHIVDYGCGYGYLGLVLMPL-------L--PEGSKYTGIDSGETLLAEAR   64 (284)
T ss_dssp             TTCCHHHHHHHHHTTSC---------CCSCCEEEEETCTTTHHHHHHTTT-------S--CTTCEEEEEESCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHC---------CCCCCEEEEECCCCCHHHHHHHHH-------C--CCCCEEEEECCCHHHHHHHH
T ss_conf             03777999999998635---------699897999548798999999985-------7--79988999849899999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             99898088753345666682347545799986641899981685676531000111234422666653577774770659
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM  336 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~  336 (674)
                      .+.--.+.+.        ++..||...- .++ .+||+|+++-=+.  |                      +|   +- .
T Consensus        65 ~~~~~~~~~~--------~~~~~d~~~~-~~~-~~fD~V~~~~~l~--h----------------------~~---d~-~  106 (284)
T 3gu3_A           65 ELFRLLPYDS--------EFLEGDATEI-ELN-DKYDIAICHAFLL--H----------------------MT---TP-E  106 (284)
T ss_dssp             HHHHSSSSEE--------EEEESCTTTC-CCS-SCEEEEEEESCGG--G----------------------CS---SH-H
T ss_pred             HHHHHCCCCC--------EEECCCCCCC-CCC-CCEEEEEEHHHHH--C----------------------CC---CH-H
T ss_conf             8666414200--------1200111247-989-9757998864765--6----------------------78---89-9


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             99999999614665788079997389
Q gi|254780836|r  337 LFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       337 lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                      .+|+++...|||    ||++.++-+.
T Consensus       107 ~~l~~~~~~Lkp----gG~lii~ep~  128 (284)
T 3gu3_A          107 TMLQKMIHSVKK----GGKIICFEPH  128 (284)
T ss_dssp             HHHHHHHHTEEE----EEEEEEEECC
T ss_pred             HHHHHHHHHCCC----CCEEEEEECC
T ss_conf             999999998388----9589999787


No 66 
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.34  E-value=0.0019  Score=40.52  Aligned_cols=94  Identities=11%  Similarity=0.072  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r  178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      +||. .++++++++-      +  .|  +.+|+|-.||+|+++....+.       .    ...+.|.|+++...+.|+.
T Consensus        20 ~~~~-~~~~l~~~l~------l--~p--g~rVLDiGcG~G~~~~~la~~-------~----~~~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           20 FTEE-KYATLGRVLR------M--KP--GTRILDLGSGSGEMLCTWARD-------H----GITGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             CCHH-HHHHHHHHTC------C--CT--TCEEEEETCTTCHHHHHHHHH-------T----CCEEEEEESCHHHHHHHHH
T ss_pred             CCHH-HHHHHHHHCC------C--CC--CCEEEEECCCCCHHHHHHHHH-------C----CCEEEEEECCHHHHHHHHH
T ss_conf             8899-9999999708------9--99--999999858888899999986-------4----9989999898367789988


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             98980887533456666823475457999866418999816856
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      +.--.|....      -.+..+|..  +.+++..||.|+++=-+
T Consensus        78 ~~~~~gl~~~------v~~~~~d~~--~~~~~~~fD~v~~~~~~  113 (256)
T 1nkv_A           78 RAEELGVSER------VHFIHNDAA--GYVANEKCDVAACVGAT  113 (256)
T ss_dssp             HHHHTTCTTT------EEEEESCCT--TCCCSSCEEEEEEESCG
T ss_pred             HHHHHCCCCC------CCCCCCCHH--HCCCCCCEEEEEEECCE
T ss_conf             6776065544------441136364--50567844699997441


No 67 
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14
Probab=97.33  E-value=0.0047  Score=37.99  Aligned_cols=141  Identities=14%  Similarity=0.189  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             44389999999998622766575368179999999973178401101387764031176654046899999999985310
Q gi|254780836|r  154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH  233 (674)
Q Consensus       154 ~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~  233 (674)
                      ....+|+.+|+|.--        .|  +++.+.+..++-    ..+  .|+  .+|+|-.||||.++....+++      
T Consensus        25 ~va~~fd~~i~r~iP--------~Y--~~~~~~i~~~~~----~~~--~~~--~~vLDlGcGtG~~~~~l~~~~------   80 (244)
T 1im8_A           25 NVAEVFPDMIQRSVP--------GY--SNIITAIGMLAE----RFV--TAD--SNVYDLGCSRGAATLSARRNI------   80 (244)
T ss_dssp             HHHHHHHHHHHHHST--------TH--HHHHHHHHHHHH----HHC--CTT--CEEEEESCTTCHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHCCC--------CH--HHHHHHHHHHHH----HHC--CCC--CEEEEEEECCCHHHHHHHHHC------
T ss_conf             277760668870599--------88--999999999999----867--997--989992002228899988633------


Q ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf             05333225504666678899999998980887533456666823475457999866418999816856765310001112
Q gi|254780836|r  234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE  313 (674)
Q Consensus       234 ~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~  313 (674)
                       . .....++|.|+++....+|+.+.--.+....      -....+|.+.   ++...||+++++=-+  .|=       
T Consensus        81 -~-~~~~~v~giD~S~~ml~~A~~k~~~~~~~~~------~~~~~~d~~~---~~~~~~d~i~~~~~l--~~~-------  140 (244)
T 1im8_A           81 -N-QPNVKIIGIDNSQPMVERCRQHIAAYHSEIP------VEILCNDIRH---VEIKNASMVILNFTL--QFL-------  140 (244)
T ss_dssp             -C-CSSCEEEEECSCHHHHHHHHHHHHTSCCSSC------EEEECSCTTT---CCCCSEEEEEEESCG--GGS-------
T ss_pred             -C-CCCCEEEEECCCHHHHHHHHHHHHHCCCCCC------CCCCCCCCCC---CCCCCCCEEEEEEEE--EEC-------
T ss_conf             -6-9980899976978999999864431065432------1101232100---012432126886422--305-------


Q ss_pred             HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             3442266665357777477065999999999614665788079997
Q gi|254780836|r  314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV  359 (674)
Q Consensus       314 ~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV  359 (674)
                                     |+. + -..+++.+-..|+|    ||+..+.
T Consensus       141 ---------------~~~-d-~~~~l~~i~~~Lkp----gG~lii~  165 (244)
T 1im8_A          141 ---------------PPE-D-RIALLTKIYEGLNP----NGVLVLS  165 (244)
T ss_dssp             ---------------CGG-G-HHHHHHHHHHHEEE----EEEEEEE
T ss_pred             ---------------CHH-H-HHHHHHHHHHHCCC----CCEEEEE
T ss_conf             ---------------617-8-89999999851789----9689999


No 68 
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=97.31  E-value=0.00061  Score=43.77  Aligned_cols=100  Identities=16%  Similarity=0.099  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r  178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      .-||+-.+++.+++-    ..+  .||  .+|.|-+||||+.+..       +..  .......++|.|+++...++|+.
T Consensus        99 l~~r~~~~~~~~~~~----~~l--~~g--~~vLDvGcG~G~~~~~-------l~~--~~~p~~~v~gvD~S~~~l~~A~~  161 (305)
T 3ocj_A           99 LATRERHGHFRRALQ----RHL--RPG--CVVASVPCGWMSELLA-------LDY--SACPGVQLVGIDYDPEALDGATR  161 (305)
T ss_dssp             HHHHHHHHHHHHHHH----HHC--CTT--CEEEETTCTTCHHHHT-------SCC--TTCTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH----HCC--CCC--CEEEEECCCCHHHHHH-------HHH--HHCCCCEEEEEECCHHHHHHHHH
T ss_conf             377888999999999----409--995--9999944747699999-------999--71899589999798889999975


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             989808875334566668234754579998664189998168567
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg  302 (674)
                      +.--+|....      -....+|...-+  ...+||.|++|+++-
T Consensus       162 ~~~~~~l~~~------~~~~~~d~~~l~--~~~~~d~iv~~~~~~  198 (305)
T 3ocj_A          162 LAAGHALAGQ------ITLHRQDAWKLD--TREGYDLLTSNGLNI  198 (305)
T ss_dssp             HHTTSTTGGG------EEEEECCGGGCC--CCSCEEEEECCSSGG
T ss_pred             HHHHHCCCCC------CCCCCCCHHHHC--CCCCCCEEEEECCCC
T ss_conf             3022012322------233200088742--466401799813421


No 69 
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.28  E-value=0.0043  Score=38.25  Aligned_cols=103  Identities=13%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      |.|+---...-|.+.+|          .|.++.+|.|-|||.||-.+...+.+.    .     ...+++.|+++.-...
T Consensus        82 G~~~vQd~aS~l~~~~l----------~~~~g~~VLD~CAapGgKt~~la~l~~----~-----~~~i~a~D~~~~Rl~~  142 (309)
T 2b9e_A           82 GHLILQDRASCLPAMLL----------DPPPGSHVIDACAAPGNKTSHLAALLK----N-----QGKIFAFDLDAKRLAS  142 (309)
T ss_dssp             TSEEECCTGGGHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHHT----T-----CSEEEEEESCHHHHHH
T ss_pred             CEEEEECHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHHHH
T ss_conf             77999878998999973----------999999499967896579999998725----8-----9669998087888999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEEECCCCCC
Q ss_conf             9999898088753345666682347545799986--641899981685676
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGK  303 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~--~~kFD~vlaNPPFg~  303 (674)
                      .+.||--.|+..       -.+..+|.+.-+...  -.+||.||..||-+-
T Consensus       143 l~~~~~r~g~~~-------v~~~~~d~~~~~~~~~~~~~fd~IlvDaPCSg  186 (309)
T 2b9e_A          143 MATLLARAGVSC-------CELAEEDFLAVSPSDPRYHEVHYILLDPSCSG  186 (309)
T ss_dssp             HHHHHHHTTCCS-------EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC
T ss_pred             HHHHHHHCCCCE-------EEEEECCHHHCCCCCCCCCCEEEEEECCCCCC
T ss_conf             987677508734-------99970424444433444551139993289788


No 70 
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.26  E-value=0.0014  Score=41.37  Aligned_cols=142  Identities=7%  Similarity=0.019  Sum_probs=77.0

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||||.++...    ....      ....++|.|+++...++|+.+.--.|....        ....+.... 
T Consensus        50 ~~~VLDiGCG~G~~~~~l----a~~~------p~~~v~gvD~s~~~l~~a~~~~~~~~~~~~--------~~~~~~~~~-  110 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQ----WNEN------EKIIYHAYDIDRAEIAFLSSIIGKLKTTIK--------YRFLNKESD-  110 (200)
T ss_dssp             CSEEEEETCTTHHHHHHH----HCSS------CCCEEEEECSCHHHHHHHHHHHHHSCCSSE--------EEEECCHHH-
T ss_pred             CCEEEEECCCCCHHHHHH----HHHC------CCCEEEEEECCHHHHHHHHHHHHHCCCCEE--------EEEECHHHH-
T ss_conf             987999588678779999----9878------997899985999999999851023288515--------665101333-


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf             98664189998168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL  365 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L  365 (674)
                       .+..+||+|+++--+-  |      +.+     .  +             .+++++...|++    ||.+.+ .+-..+
T Consensus       111 -~~~~~fD~i~~~~~l~--~------~~~-----~--~-------------~~l~~~~~~L~~----gG~~v~-~~~~~~  156 (200)
T 3fzg_A          111 -VYKGTYDVVFLLKMLP--V------LKQ-----Q--D-------------VNILDFLQLFHT----QNFVIS-FPIKSL  156 (200)
T ss_dssp             -HTTSEEEEEEEETCHH--H------HHH-----T--T-------------CCHHHHHHTCEE----EEEEEE-EECCCC
T ss_pred             -CCCCCCCEEEECCCHH--C------CCC-----H--H-------------HHHHHHHHHHCC----CCEEEE-EECCCC
T ss_conf             -4478969898738332--3------788-----9--9-------------999999996079----958999-734334


Q ss_pred             CCCCCCCC---HHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             47764432---689999998849468883176776557
Q gi|254780836|r  366 FNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR  400 (674)
Q Consensus       366 F~G~agsG---Es~IRk~lie~d~ieaII~LP~~lFyn  400 (674)
                      .....+..   +..+.+.+-+..++.-.+.+|+.++|-
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i  194 (200)
T 3fzg_A          157 SGKEKGMEENYQLWFESFTKGWIKILDSKVIGNELVYI  194 (200)
T ss_dssp             C--CTTCCCCHHHHHHHHTTTTSCEEEEEEETTEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEE
T ss_conf             77540556449999997633676055899606536833


No 71 
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=97.25  E-value=0.0016  Score=41.07  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      .+.+|.|-.||+|+++.....       ..    ..++.|.++++...+.|+....-.+....      ..+..+|.. +
T Consensus        61 ~g~~VLDiGcG~G~~~~~~~~-------~~----~~~v~gvD~s~~~~~~~~~~~~~~~~~~~------~~~~~~d~~-~  122 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLAT-------AR----DVRVTGISISRPQVNQANARATAAGLANR------VTFSYADAM-D  122 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHH-------HS----CCEEEEEESCHHHHHHHHHHHHHTTCTTT------EEEEECCTT-S
T ss_pred             CCCEEEEECCCCCHHHHHHHH-------HC----CCEEEEEECCHHHHHHHHHHHHHHCCCCE------EECCCCCCC-C
T ss_conf             979899978979988999998-------45----98899997848889999999987177732------100134434-6


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             998664189998168567653100011123442266665357777477065999999999614665788079997
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV  359 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV  359 (674)
                      -.++..+||+|+++=-+-  |                      +|..    -.+|.++-..|||    ||++++.
T Consensus       123 l~~~~~~fD~v~~~~~l~--h----------------------~~d~----~~~l~~~~r~Lkp----gG~l~i~  165 (273)
T 3bus_A          123 LPFEDASFDAVWALESLH--H----------------------MPDR----GRALREMARVLRP----GGTVAIA  165 (273)
T ss_dssp             CCSCTTCEEEEEEESCTT--T----------------------SSCH----HHHHHHHHTTEEE----EEEEEEE
T ss_pred             CCCCCCCCCEEEECCCEE--E----------------------CCCH----HHHHHHHHHHCCC----CCEEEEE
T ss_conf             887777624898646265--0----------------------6649----9999999986599----9689999


No 72 
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=97.20  E-value=0.0026  Score=39.62  Aligned_cols=85  Identities=15%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      ...+|.|-+||+||.|...   .+     .+   ...+.|.|++++....|+-..--.+...............||....
T Consensus        34 ~~~~VLDlGCG~G~dl~k~---~~-----~~---~~~v~GiDis~~~i~~A~~r~~~~~~~~~~~~~~~~~f~~~D~~~~  102 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKW---KK-----GR---INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKE  102 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHH---HH-----TT---CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTS
T ss_pred             CCCEEEEEECCCCHHHHHH---HH-----CC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHC
T ss_conf             9797999734776889999---96-----59---9979999599999999999988543222223577638996563212


Q ss_pred             C-----CCCCCEEEEEEECCC
Q ss_conf             9-----986641899981685
Q gi|254780836|r  285 D-----LFTGKRFHYCLSNPP  300 (674)
Q Consensus       285 d-----~~~~~kFD~vlaNPP  300 (674)
                      .     ..+..+||+|.++-=
T Consensus       103 ~~~~~~~~~~~~FD~I~~~f~  123 (313)
T 3bgv_A          103 LLIDKFRDPQMCFDICSCQFV  123 (313)
T ss_dssp             CSTTTCSSTTCCEEEEEEETC
T ss_pred             HHHHHCCCCCCCCEEEEECCC
T ss_conf             013314676776108996564


No 73 
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=97.20  E-value=0.012  Score=35.33  Aligned_cols=127  Identities=11%  Similarity=0.081  Sum_probs=75.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|+.||+|..+.    ++..    .    ...++|.|+++.....|+..+.-++...      .-.+..+|-+.-+ 
T Consensus        68 ~rVLdlGCG~G~~~~----~la~----~----g~~V~giD~S~~ai~~a~~~~~~~~~~~------~v~~~~~D~~~~~-  128 (235)
T 3lcc_A           68 GRALVPGCGGGHDVV----AMAS----P----ERFVVGLDISESALAKANETYGSSPKAE------YFSFVKEDVFTWR-  128 (235)
T ss_dssp             EEEEEETCTTCHHHH----HHCB----T----TEEEEEECSCHHHHHHHHHHHTTSGGGG------GEEEECCCTTTCC-
T ss_pred             CCEEEECCCCCHHHH----HHHH----C----CCEEEEEECCHHHHHHHHHHHHHCCCCC------CEEEEECCHHHHC-
T ss_conf             948994388878999----9986----6----9879997466999999999876415442------1002325676717-


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC----
Q ss_conf             8664189998168567653100011123442266665357777477065999999999614665788079997389----
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS----  362 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng----  362 (674)
                       +...||.|+++--|..                        +|+.-  .-.|+..+...|+|    ||++.++...    
T Consensus       129 -~~~~fD~i~~~~~~~~------------------------~~~~~--r~~~~~~i~~~LkP----GG~lv~~~~~~~~~  177 (235)
T 3lcc_A          129 -PTELFDLIFDYVFFCA------------------------IEPEM--RPAWAKSMYELLKP----DGELITLMYPITDH  177 (235)
T ss_dssp             -CSSCEEEEEEESSTTT------------------------SCGGG--HHHHHHHHHHHEEE----EEEEEEEECCCSCC
T ss_pred             -CCCCCCEEEEEEEEEC------------------------CCHHH--HHHHHHHHHHHCCC----CCEEEEEEECCCCC
T ss_conf             -5566457999987121------------------------88889--99999999998186----82999999238888


Q ss_pred             --CCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             --7134776443268999999884946
Q gi|254780836|r  363 --SPLFNGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       363 --s~LF~G~agsGEs~IRk~lie~d~i  387 (674)
                        +|-|.    ..+.++++.+-..++-
T Consensus       178 ~~gpP~~----~~~~e~~~~~~~~gf~  200 (235)
T 3lcc_A          178 VGGPPYK----VDVSTFEEVLVPIGFK  200 (235)
T ss_dssp             CSCSSCC----CCHHHHHHHHGGGTEE
T ss_pred             CCCCCCC----CCHHHHHHHHHHCCCE
T ss_conf             8899998----9999999998647967


No 74 
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=97.16  E-value=0.0023  Score=40.03  Aligned_cols=105  Identities=17%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      +..+|+|-.||+|+++....+..       +    ..+.|.++++...++|+...--.|+...      -.+..||-..-
T Consensus        82 ~~~~VLDiGCG~G~~~~~la~~~-------g----~~v~gvD~s~~~i~~a~~~~~~~gl~~~------v~~~~~d~~~l  144 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-------G----VSIDCLNIAPVQNKRNEEYNNQAGLADN------ITVKYGSFLEI  144 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-------C----CEEEEEESCHHHHHHHHHHHHHHTCTTT------EEEEECCTTSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHC-------C----CEEEEEECCHHHHHHHHHHHHHCCCCCC------CEEEECCCCCC
T ss_conf             99989998899998999999963-------9----8599996742778888764432056766------22786122256


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             998664189998168567653100011123442266665357777477065999999999614665788079997
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV  359 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV  359 (674)
                       .+++..||.|++.--+-  +                      +|   |- -.++..+-..|||    ||++++.
T Consensus       145 -~~~~~~fD~V~~~~~l~--h----------------------~~---d~-~~~l~~~~r~Lkp----GG~l~~~  186 (297)
T 2o57_A          145 -PCEDNSYDFIWSQDAFL--H----------------------SP---DK-LKVFQECARVLKP----RGVMAIT  186 (297)
T ss_dssp             -SSCTTCEEEEEEESCGG--G----------------------CS---CH-HHHHHHHHHHEEE----EEEEEEE
T ss_pred             -CCCCCCEEEEEECCCHH--H----------------------CC---CH-HHHHHHHHHHCCC----CCEEEEE
T ss_conf             -76665110999857244--2----------------------37---99-9999999997198----8189999


No 75 
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.15  E-value=0.0023  Score=39.96  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=50.9

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++...    .      .......++|.|+++....+|+.+.-..+...        +...+|.+...
T Consensus       133 ~~~vlD~GcG~G~~~~~l----~------~~~~~~~v~g~D~s~~~i~~a~~~~~~~~~~~--------~~~~~d~~~~~  194 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPW----M------GLPAETVYIASDIDARLVGFVDEALTRLNVPH--------RTNVADLLEDR  194 (281)
T ss_dssp             CSEEEETTCTTGGGCCTT----T------TCCTTCEEEEEESBHHHHHHHHHHHHHTTCCE--------EEEECCTTTSC
T ss_pred             CCEEEEECCCCCHHHHHH----H------HHCCCCEEEEEECCHHHHHHHHHHHHHCCCCE--------EEEEECHHHHC
T ss_conf             986998389888899999----9------74997749996599999999999998668873--------89981354407


Q ss_pred             CCCCCEEEEEEECCCC
Q ss_conf             9866418999816856
Q gi|254780836|r  286 LFTGKRFHYCLSNPPF  301 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPF  301 (674)
                        +...||+|++.--+
T Consensus       195 --~~~~fD~v~~~~vl  208 (281)
T 3lcv_B          195 --LDEPADVTLLLKTL  208 (281)
T ss_dssp             --CCSCCSEEEETTCH
T ss_pred             --CCCCCCEEEEHHHH
T ss_conf             --65565677653448


No 76 
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.14  E-value=0.0016  Score=41.12  Aligned_cols=168  Identities=20%  Similarity=0.224  Sum_probs=98.5

Q ss_pred             CCCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             575368-1799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      ++.||- -+.....|++.+.    +.+  .+....+|+|-.||+|.|=....       ..     .-.++|.|+++.+.
T Consensus       260 p~sFfQ~N~~~~~~l~~~v~----~~l--~~~~~~~vlDLYcG~G~fsl~La-------~~-----~~~V~gvE~~~~Av  321 (433)
T 1uwv_A          260 PRDFIQVNAGVNQKMVARAL----EWL--DVQPEDRVLDLFCGMGNFTLPLA-------TQ-----AASVVGVEGVPALV  321 (433)
T ss_dssp             SSSCCCSBHHHHHHHHHHHH----HHH--TCCTTCEEEEESCTTTTTHHHHH-------TT-----SSEEEEEESCHHHH
T ss_pred             CCHHHHCCHHHHHHHHHHHH----HHH--CCCCCCEEEEECCCCCHHHHHHH-------HH-----CCEEEEEECCHHHH
T ss_conf             74131125888999999999----984--45688779995688517778766-------50-----56245663549999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999989808875334566668234754---579998664189998168567653100011123442266665357777
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP  329 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP  329 (674)
                      .-|+.|.-+.|++.-       ....||.   |........+||.|+.+||                      |-|  +.
T Consensus       322 ~~A~~na~~n~~~n~-------~f~~~~~~~~~~~~~~~~~~~d~vilDPP----------------------R~G--~~  370 (433)
T 1uwv_A          322 EKGQQNARLNGLQNV-------TFYHENLEEDVTKQPWAKNGFDKVLLDPA----------------------RAG--AA  370 (433)
T ss_dssp             HHHHHHHHHTTCCSE-------EEEECCTTSCCSSSGGGTTCCSEEEECCC----------------------TTC--CH
T ss_pred             HHHHHHHHHCCCCCE-------EEEECCHHHHHHHHHHHCCCCCEEEECCC----------------------CCC--HH
T ss_conf             999999998499756-------99914756664430665279998998999----------------------807--09


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEE
Q ss_conf             4770659999999996146657880799973-89713477644326899999988494-688831767765578861699
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYL  407 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~I  407 (674)
                             -+++.++ ++++     -|++-|- |-.+|-|        .++ .|++.+| |+.|.  |=+||-.|.==-+|
T Consensus       371 -------~~~~~l~-~~~p-----~~IvYVSCnP~TlaR--------Dl~-~L~~~gy~l~~i~--~~D~FP~T~HvE~v  426 (433)
T 1uwv_A          371 -------GVMQQII-KLEP-----IRIVYVSCNPATLAR--------DSE-ALLKAGYTIARLA--MLDMFPHTGHLESM  426 (433)
T ss_dssp             -------HHHHHHH-HHCC-----SEEEEEESCHHHHHH--------HHH-HHHHTTCEEEEEE--EECCSTTSSCCEEE
T ss_pred             -------HHHHHHH-HCCC-----CEEEEEECCHHHHHH--------HHH-HHHHCCCEEEEEE--EEECCCCCCEEEEE
T ss_conf             -------9999998-3697-----959999089899998--------999-9987896685999--95338998618999


Q ss_pred             EEEECCC
Q ss_conf             9994688
Q gi|254780836|r  408 WILSNRK  414 (674)
Q Consensus       408 wil~k~K  414 (674)
                      -+|++-|
T Consensus       427 ~~l~R~~  433 (433)
T 1uwv_A          427 VLFSRVK  433 (433)
T ss_dssp             EEEEC--
T ss_pred             EEEEECC
T ss_conf             9999769


No 77 
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=97.10  E-value=0.004  Score=38.47  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|..||+|.++..    +.+.    +    ..+.|.|+++....+|+....    ...      .++...+....+.
T Consensus        54 ~~vLDiGcG~G~~~~~----l~~~----g----~~v~gvD~S~~~i~~A~~~~~----~~~------~~~~~~~~~~~~~  111 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRA----LADR----G----IEAVGVDGDRTLVDAARAAGA----GEV------HLASYAQLAEAKV  111 (227)
T ss_dssp             SEEEEETCTTCHHHHH----HHTT----T----CEEEEEESCHHHHHHHHHTCS----SCE------EECCHHHHHTTCS
T ss_pred             CEEEEECCCCCHHHHH----HHHC----C----CEEEEECCCHHHHHHHHHHCC----CCC------CEEEEEECCCCCC
T ss_conf             9899976898399999----9976----9----969998681788999998601----465------1244330111122


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             8664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                      ..+..||+|+++=-+  .| .+                      .    -.+++.+-..|+|    ||++.+..++
T Consensus       112 ~~~~~fD~V~~~~~l--~~-~d----------------------~----~~~l~~~~r~Lkp----gG~li~~~~~  154 (227)
T 3e8s_A          112 PVGKDYDLICANFAL--LH-QD----------------------I----IELLSAMRTLLVP----GGALVIQTLH  154 (227)
T ss_dssp             CCCCCEEEEEEESCC--CS-SC----------------------C----HHHHHHHHHTEEE----EEEEEEEECC
T ss_pred             CCCCCCCEEEEEEEE--EE-CC----------------------H----HHHHHHHHHHCCC----CCEEEEEECC
T ss_conf             467771489996378--60-89----------------------9----9999999998388----9389999767


No 78 
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
Probab=97.07  E-value=0.0015  Score=41.30  Aligned_cols=94  Identities=16%  Similarity=0.100  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      +++++-+..++  +   .+    .+..+|.|-.||+|++.....    +   ...    ..+.|.|+++..-..|+.++-
T Consensus        31 ~e~~~~~l~~l--~---~l----~~~~~VLDIGCG~G~~~~~lA----~---~~~----~~V~giD~s~~~l~~a~~~~~   90 (267)
T 3kkz_A           31 PEVTLKALSFI--D---NL----TEKSLIADIGCGTGGQTMVLA----G---HVT----GQVTGLDFLSGFIDIFNRNAR   90 (267)
T ss_dssp             HHHHHHHHTTC--C---CC----CTTCEEEEETCTTCHHHHHHH----T---TCS----SEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--C---CC----CCCCEEEEECCCCCHHHHHHH----H---HCC----CEEEEEECCCHHHHHHHHHCC
T ss_conf             99999999817--2---79----999989996278979999999----7---479----989999797316589887323


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             80887533456666823475457999866418999816856
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      -.|....      -....+|...- .+++.+||+|++.=-+
T Consensus        91 ~~~l~~~------v~~~~~d~~~l-~~~~~~FD~I~s~~~l  124 (267)
T 3kkz_A           91 QSGLQNR------VTGIVGSMDDL-PFRNEELDLIWSEGAI  124 (267)
T ss_dssp             HTTCTTT------EEEEECCTTSC-CCCTTCEEEEEESSCG
T ss_pred             CCCCCCC------CCHHHCCCCCC-CCCCCCEEEEEECHHH
T ss_conf             2344433------10010012356-7788846689740437


No 79 
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.06  E-value=0.00016  Score=47.51  Aligned_cols=79  Identities=19%  Similarity=0.078  Sum_probs=53.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf             031176654046899999999985310053332255046666788999999989808875334566668234754579-9
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D  285 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d  285 (674)
                      .+|+|-|||.|+.......       .     ...+.|.|+++.+.++|+.|+-.-+....     ..++..||.+.- .
T Consensus        95 ~~v~Dl~cG~G~da~alA~-------~-----~~~V~~vE~d~~~~~~A~~N~~~~~~~~~-----~v~~~~~D~~~~l~  157 (410)
T 3ll7_A           95 TKVVDLTGGLGIDFIALMS-------K-----ASQGIYIERNDETAVAARHNIPLLLNEGK-----DVNILTGDFKEYLP  157 (410)
T ss_dssp             CEEEESSCSSSHHHHHHHT-------T-----CSEEEEEESCHHHHHHHHHHHHHHSCTTC-----EEEEEESCGGGSHH
T ss_pred             CEEEECCCCHHHHHHHHHH-------C-----CCEEEEEECCHHHHHHHHHHHHHHHCCCC-----CEEEEECCHHHHHH
T ss_conf             9899878866799999996-------3-----99899995899999999984898726788-----26999666888875


Q ss_pred             CCCCCEEEEEEECCCCC
Q ss_conf             98664189998168567
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg  302 (674)
                      ......||+|+.+||.-
T Consensus       158 ~~~~~~~d~v~~DPaRR  174 (410)
T 3ll7_A          158 LIKTFHPDYIYVDPARR  174 (410)
T ss_dssp             HHHHHCCSEEEECCEEC
T ss_pred             HCCCCCCCEEEECCCCC
T ss_conf             34677788899766233


No 80 
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=97.00  E-value=0.0031  Score=39.15  Aligned_cols=116  Identities=17%  Similarity=0.215  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r  180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM  259 (674)
Q Consensus       180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM  259 (674)
                      +|.+..|+..+           .+.....|.|-.||||.+.....++    .+.      ..+.|.|+++.+-..|+.+.
T Consensus        19 ~~~~~~ll~~~-----------~~~~~~rVLDiGCGtG~~t~~la~~----~~~------~~v~gvD~S~~ml~~A~~~~   77 (259)
T 2p35_A           19 TRPARDLLAQV-----------PLERVLNGYDLGCGPGNSTELLTDR----YGV------NVITGIDSDDDMLEKAADRL   77 (259)
T ss_dssp             GHHHHHHHTTC-----------CCSCCSSEEEETCTTTHHHHHHHHH----HCT------TSEEEEESCHHHHHHHHHHS
T ss_pred             HHHHHHHHHCC-----------CCCCCCEEEEECCCCCHHHHHHHHH----CCC------CEEEEEECCHHHHHHHHHHC
T ss_conf             66999999528-----------8889898999816286999999987----899------87999989879999999725


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             98088753345666682347545799986641899981685676531000111234422666653577774770659999
Q gi|254780836|r  260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL  339 (674)
Q Consensus       260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl  339 (674)
                        .++          .+..+|-..- . .+.+||+|++|=  ...|-.+.                         . .++
T Consensus        78 --~~v----------~~~~~d~~~~-~-~~~~fD~V~s~~--~l~~~~d~-------------------------~-~~l  115 (259)
T 2p35_A           78 --PNT----------NFGKADLATW-K-PAQKADLLYANA--VFQWVPDH-------------------------L-AVL  115 (259)
T ss_dssp             --TTS----------EEEECCTTTC-C-CSSCEEEEEEES--CGGGSTTH-------------------------H-HHH
T ss_pred             --CCC----------CCEEEEHHHC-C-CCCCCCEECCCC--EEEECCCH-------------------------H-HHH
T ss_conf             --663----------1201424212-4-354555641201--57746888-------------------------9-999


Q ss_pred             HHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             99999614665788079997389
Q gi|254780836|r  340 MHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       340 qh~i~klk~~~~~ggr~aIV~ng  362 (674)
                      ..+..-|||    ||++++.+++
T Consensus       116 ~~~~~~Lkp----gG~l~~~~~~  134 (259)
T 2p35_A          116 SQLMDQLES----GGVLAVQMPD  134 (259)
T ss_dssp             HHHGGGEEE----EEEEEEEEEC
T ss_pred             HHHHHHCCC----CEEEEEEECC
T ss_conf             999985399----8499999589


No 81 
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=96.94  E-value=0.0028  Score=39.49  Aligned_cols=104  Identities=16%  Similarity=0.089  Sum_probs=63.2

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|+|..||+|+......   ..    .    ...++|.|+++...+.|+-.+--.+.+.        .+..||.. +-
T Consensus        24 ~~~VLDiGcG~G~~~~~~~---~~----~----~~~v~gvD~S~~~i~~a~~~~~~~~~~v--------~~~~~d~~-~l   83 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIF---VE----D----GYKTYGIEISDLQLKKAENFSRENNFKL--------NISKGDIR-KL   83 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHH---HH----T----TCEEEEEECCHHHHHHHHHHHHHHTCCC--------CEEECCTT-SC
T ss_pred             CCEEEEEECCCCHHHHHHH---HH----C----CCEEEEEECCHHHHHHHHHHHHCCCCEE--------EEECCEEE-CC
T ss_conf             8989997278899999999---85----8----9989999597999999986220357436--------53002022-36


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             98664189998168567653100011123442266665357777477065999999999614665788079997
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV  359 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV  359 (674)
                      .|++.+||+|+++-=+  .|=..      +                 + -..++..+...|+|    ||.+.+-
T Consensus        84 ~~~~~sfD~I~s~~~l--~h~~~------~-----------------~-~~~~l~~~~r~Lkp----gG~~~i~  127 (209)
T 2p8j_A           84 PFKDESMSFVYSYGTI--FHMRK------N-----------------D-VKEAIDEIKRVLKP----GGLACIN  127 (209)
T ss_dssp             CSCTTCEEEEEECSCG--GGSCH------H-----------------H-HHHHHHHHHHHEEE----EEEEEEE
T ss_pred             CCCCCCCCHHHHHHHH--HCCCH------H-----------------H-HHHHHHHHHHHCCC----CEEEEEE
T ss_conf             8543423388876678--72884------7-----------------8-99999999987585----8499999


No 82 
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
Probab=96.92  E-value=0.0039  Score=38.53  Aligned_cols=121  Identities=15%  Similarity=0.048  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      ++.++-++.+|-     .+   ++ ..+|+|-+||||.+.....++       .    ...++|.|+++..-++|+.++.
T Consensus        31 ~~~~~~~l~~l~-----~l---~~-~~rVLDlGCG~G~~~~~La~~-------~----~~~v~gvD~S~~ml~~a~~~~~   90 (257)
T 3f4k_A           31 PEATRKAVSFIN-----EL---TD-DAKIADIGCGTGGQTLFLADY-------V----KGQITGIDLFPDFIEIFNENAV   90 (257)
T ss_dssp             HHHHHHHHTTSC-----CC---CT-TCEEEEETCTTSHHHHHHHHH-------C----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC-----CC---CC-CCEEEEECCCCCHHHHHHHHH-------C----CCEEEEEECCHHHHHHHHHHHH
T ss_conf             999999998360-----79---99-797999717797999999986-------6----9979999684567788898776


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             80887533456666823475457999866418999816856765310001112344226666535777747706599999
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM  340 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlq  340 (674)
                      -.|....      -.+..||... -.|++..||+|++.=  ...|-                      +   +.  .++.
T Consensus        91 ~~~~~~~------v~~~~~d~~~-l~~~~~~fD~V~~~~--~l~~~----------------------~---~~--~~l~  134 (257)
T 3f4k_A           91 KANCADR------VKGITGSMDN-LPFQNEELDLIWSEG--AIYNI----------------------G---FE--RGMN  134 (257)
T ss_dssp             HTTCTTT------EEEEECCTTS-CSSCTTCEEEEEEES--CSCCC----------------------C---HH--HHHH
T ss_pred             HHHHHCC------HHHHHHHHHH-HHCCCCCCCEEEEHH--HHHHC----------------------C---HH--HHHH
T ss_conf             4321000------0111303887-623688521898605--47728----------------------9---89--9999


Q ss_pred             HHHHHHCCCCCCCCEEEEECC
Q ss_conf             999961466578807999738
Q gi|254780836|r  341 HLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       341 h~i~klk~~~~~ggr~aIV~n  361 (674)
                      .+...|||    ||++++..+
T Consensus       135 e~~rvLkp----gG~l~i~~~  151 (257)
T 3f4k_A          135 EWSKYLKK----GGFIAVSEA  151 (257)
T ss_dssp             HHHTTEEE----EEEEEEEEE
T ss_pred             HHHHHCCC----CEEEEEEEC
T ss_conf             99997085----819999988


No 83 
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43
Probab=96.92  E-value=0.0049  Score=37.89  Aligned_cols=106  Identities=20%  Similarity=0.205  Sum_probs=63.5

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL  282 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL  282 (674)
                      ++...+|+|..||||.++....    +.    +    ..+.|.|+++...+.|+.+.--.+...        .+..+|..
T Consensus        39 ~~~~~~ILDiGcGtG~~~~~l~----~~----g----~~v~gvD~s~~ml~~a~~~~~~~~~~~--------~~~~~d~~   98 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELA----ER----G----YEVVGLDLHEEMLRVARRKAKERNLKI--------EFLQGDVL   98 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHH----HT----T----CEEEEEESCHHHHHHHHHHHHHTTCCC--------EEEESCGG
T ss_pred             CCCCCEEEEECCCCCHHHHHHH----HC----C----CEEEEEECCHHHHHHHHHHHHHCCCCC--------EEEECCHH
T ss_conf             7898989995475869999999----76----9----989999746889999999776428752--------36865542


Q ss_pred             CCCCCCCCEEEEEEECCCCCC-CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             799986641899981685676-531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  283 SKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       283 ~~d~~~~~kFD~vlaNPPFg~-~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      .-+  ...+||+|++.  |++ .|-      .                 . .....+++++-..|+|    ||++.+-+
T Consensus        99 ~l~--~~~~fD~V~~~--~~~~~~~------~-----------------~-~~~~~~l~~~~~~Lkp----gG~li~~~  145 (252)
T 1wzn_A           99 EIA--FKNEFDAVTMF--FSTIMYF------D-----------------E-EDLRKLFSKVAEALKP----GGVFITDF  145 (252)
T ss_dssp             GCC--CCSCEEEEEEC--SSGGGGS------C-----------------H-HHHHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             HCC--CCCCCCEEEEE--CCCHHCC------C-----------------H-HHHHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             056--67775489996--1511128------8-----------------7-8999999999997697----83899997


No 84 
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=96.91  E-value=0.0048  Score=37.95  Aligned_cols=132  Identities=11%  Similarity=0.026  Sum_probs=74.4

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             53681799999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r  176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC  255 (674)
Q Consensus       176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa  255 (674)
                      +...++.+.+.+-.|           .+.++.+|.|+.||+|.....    +.+.    +    ..+.|.|++++.-+.|
T Consensus         4 ~~~~~~~~~~~~~~l-----------~~~~g~rVLD~GCG~G~~~~~----La~~----g----~~v~gvD~S~~~i~~a   60 (203)
T 1pjz_A            4 QSEVNKDLQQYWSSL-----------NVVPGARVLVPLCGKSQDMSW----LSGQ----G----YHVVGAELSEAAVERY   60 (203)
T ss_dssp             CSSSTHHHHHHHHHH-----------CCCTTCEEEETTTCCSHHHHH----HHHH----C----CEEEEEEECHHHHHHH
T ss_pred             HHHHCHHHHHHHHHC-----------CCCCCCEEEEECCCCCHHHHH----HHHC----C----CEEEEECCCHHHHHHH
T ss_conf             345488999999964-----------999999799973789888999----9967----9----8778852659999999


Q ss_pred             HHHHHHHCCCCC---CCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999898088753---34566668--2347545799986641899981685676531000111234422666653577774
Q gi|254780836|r  256 VAGMLIRRLESD---PRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK  330 (674)
Q Consensus       256 k~nMli~g~~~d---~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~  330 (674)
                      +.+.-..+....   .......+  +..+|.+.-+......||.+++.-.|-                        -+++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~------------------------~~~~  116 (203)
T 1pjz_A           61 FTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMI------------------------ALPA  116 (203)
T ss_dssp             HHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGG------------------------GSCH
T ss_pred             HHHHCCCCCCCCCCHHHCCCCCEEEEEEEEHHCCCCCCCCCCCEEEEEEEHH------------------------HCCH
T ss_conf             9972345532000111100232368998301116632245621799985043------------------------2697


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             770659999999996146657880799973
Q gi|254780836|r  331 ISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                       ++ .-.+++++.+.|+|    ||+..++.
T Consensus       117 -~~-~~~~~~~~~~~L~p----GG~~~l~~  140 (203)
T 1pjz_A          117 -DM-RERYVQHLEALMPQ----ACSGLLIT  140 (203)
T ss_dssp             -HH-HHHHHHHHHHHSCS----EEEEEEEE
T ss_pred             -HH-HHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             -88-88999999985788----84899999


No 85 
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=96.91  E-value=0.0098  Score=35.91  Aligned_cols=133  Identities=14%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             43899999999986227665753681799999999731784011013877640311766540468999999999853100
Q gi|254780836|r  155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH  234 (674)
Q Consensus       155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~  234 (674)
                      +...|....+++..          ...+..+++..++-         .+....+|+|-.||||.++....+    ..+  
T Consensus        13 ~a~~Yd~~~~~~~p----------~~~~~~~~~~~~~~---------~~~~~~~VLDiGcG~G~~~~~l~~----~~~--   67 (234)
T 3dtn_A           13 VSGKYDEQRRKFIP----------CFDDFYGVSVSIAS---------VDTENPDILDLGAGTGLLSAFLME----KYP--   67 (234)
T ss_dssp             HHHHHHHHHHHHCT----------THHHHHHHHHHTCC---------CSCSSCEEEEETCTTSHHHHHHHH----HCT--
T ss_pred             HHHHHHHHHHHCCC----------CHHHHHHHHHHHHH---------CCCCCCEEEEECCCCCHHHHHHHH----HCC--
T ss_conf             99999999876484----------58999999999843---------569999599981768599999999----889--


Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHH
Q ss_conf             53332255046666788999999989808875334566668--2347545799986641899981685676531000111
Q gi|254780836|r  235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV  312 (674)
Q Consensus       235 ~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v  312 (674)
                          ...+.|.|+++....+|+...  .+         ..|  ...||...-+ + ..+||.|+++--+.  |       
T Consensus        68 ----~~~v~giD~s~~~l~~A~~~~--~~---------~~~v~~~~~D~~~~~-~-~~~fD~I~~~~~l~--~-------  121 (234)
T 3dtn_A           68 ----EATFTLVDMSEKMLEIAKNRF--RG---------NLKVKYIEADYSKYD-F-EEKYDMVVSALSIH--H-------  121 (234)
T ss_dssp             ----TCEEEEEESCHHHHHHHHHHT--CS---------CTTEEEEESCTTTCC-C-CSCEEEEEEESCGG--G-------
T ss_pred             ----CCEEEEEECCHHHHHHHHHHH--HC---------CCCEEEEEEECCCCC-C-CCCHHHHHHHHHHH--C-------
T ss_conf             ----968999958504578999863--02---------776247742001345-4-45513455577787--0-------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             23442266665357777477065999999999614665788079997
Q gi|254780836|r  313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV  359 (674)
Q Consensus       313 ~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV  359 (674)
                                     +|+. + -..++.++...|+|    ||++.+.
T Consensus       122 ---------------l~~~-~-~~~~l~~~~~~Lkp----gG~~i~~  147 (234)
T 3dtn_A          122 ---------------LEDE-D-KKELYKRSYSILKE----SGIFINA  147 (234)
T ss_dssp             ---------------SCHH-H-HHHHHHHHHHHEEE----EEEEEEE
T ss_pred             ---------------CCHH-H-HHHHHHHHHHHCCC----CEEEEEE
T ss_conf             ---------------8938-8-99879999976589----8099999


No 86 
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=96.91  E-value=0.015  Score=34.68  Aligned_cols=146  Identities=15%  Similarity=0.138  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHCC---CCCCCCCCHHHHHHH-HHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             899999999986227---665753681799999-9997317840110138776403117665404689999999998531
Q gi|254780836|r  157 NIYEHLIRRFGSEVS---EGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS  232 (674)
Q Consensus       157 ~iyE~LIrkFae~~~---~~aGeffTPR~Vi~L-mv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~  232 (674)
                      ..|-.+-++|+....   .-...+ .|.....+ ++..|          .||  .+|+|-+||||.+....    .+   
T Consensus         9 ~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l----------~pg--~rVLDvGCGtG~~a~~L----a~---   68 (226)
T 3m33_A            9 ESYDRLARELGGYRHPWARVLSGP-DPELTFDLWLSRLL----------TPQ--TRVLEAGCGHGPDAARF----GP---   68 (226)
T ss_dssp             HHHHHHHHHHTTTSCCSCCEESSS-CTTHHHHHHHHHHC----------CTT--CEEEEESCTTSHHHHHH----GG---
T ss_pred             HHHHHHHHHHCCCCCHHHHHCCCC-CHHHHHHHHHHHHC----------CCC--CEEEEECCCCCHHHHHH----HC---
T ss_conf             999999987266535366750598-86799999999518----------999--97999884658645777----51---


Q ss_pred             HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEECCCCCCCCCCCHHH
Q ss_conf             0053332255046666788999999989808875334566668234754579998-664189998168567653100011
Q gi|254780836|r  233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDA  311 (674)
Q Consensus       233 ~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~-~~~kFD~vlaNPPFg~~Wk~~~~~  311 (674)
                      . .    ..+.|.|+++..-++|+.+.-  +          .++..++....-.+ .+..||+|++|+-.  .       
T Consensus        69 ~-g----~~V~giD~S~~mi~~Ar~~~~--~----------~~~~~~~~~~~lp~~~~~~FD~V~s~~~~--~-------  122 (226)
T 3m33_A           69 Q-A----ARWAAYDFSPELLKLARANAP--H----------ADVYEWNGKGELPAGLGAPFGLIVSRRGP--T-------  122 (226)
T ss_dssp             G-S----SEEEEEESCHHHHHHHHHHCT--T----------SEEEECCSCSSCCTTCCCCEEEEEEESCC--S-------
T ss_pred             C-C----CEEEECCCCHHHHHHHHHHCC--C----------CCEEEEECCCCCCCCCCCCEEEEEECCCH--H-------
T ss_conf             6-8----689965799999999998589--9----------97899746667988789964699976899--9-------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             123442266665357777477065999999999614665788079997389713477644326899999988494
Q gi|254780836|r  312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL  386 (674)
Q Consensus       312 v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~  386 (674)
                                               .+++.+...|||    ||++.++.+...         ...+++.+.+..+
T Consensus       123 -------------------------~~l~ei~rvLkP----GG~l~~~~~~~~---------~~~~~~~l~~~~~  159 (226)
T 3m33_A          123 -------------------------SVILRLPELAAP----DAHFLYVGPRLN---------VPEVPERLAAVGW  159 (226)
T ss_dssp             -------------------------GGGGGHHHHEEE----EEEEEEEESSSC---------CTHHHHHHHHTTC
T ss_pred             -------------------------HHHHHHHHHCCC----CCEEEEEECCCC---------CHHHHHHHHHCCC
T ss_conf             -------------------------999999998197----818999967877---------1678998754442


No 87 
>1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41
Probab=96.91  E-value=0.0033  Score=38.99  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH----HHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf             611443899999999986227665753681799----9999997317840110138776403117665404689999999
Q gi|254780836|r  151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV----VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH  226 (674)
Q Consensus       151 ~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~V----i~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~  226 (674)
                      +.+.|..+|+..-.++..-.       -+++.+    ++++..+           .|+  .+|+|-.||||.|+...   
T Consensus         9 ~~~~~~~~Fd~~a~~Yd~~~-------~~~~~~~~~~~~~~~~~-----------~~~--~~vLDiGcGtG~~~~~l---   65 (219)
T 1vlm_A            9 HHHHMWHIFERFVNEYERWF-------LVHRFAYLSELQAVKCL-----------LPE--GRGVEIGVGTGRFAVPL---   65 (219)
T ss_dssp             ---CTTHHHHHTHHHHHHHH-------HHTHHHHHHHHHHHHHH-----------CCS--SCEEEETCTTSTTHHHH---
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC-----------CCC--CEEEEECCCCCHHHHHH---
T ss_conf             03599999999999999998-------87589999999999723-----------899--90999858677999977---


Q ss_pred             HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             99853100533322550466667889999999898088753345666682347545799986641899981685676531
Q gi|254780836|r  227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE  306 (674)
Q Consensus       227 i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk  306 (674)
                             .      ..+|.|+++..-+.|+.+    ++.          ...+|. .+-.+++.+||+|+++=  ...|-
T Consensus        66 -------~------~~~giD~s~~~i~~a~~~----~i~----------~~~~d~-~~l~~~~~sfD~V~~~~--vl~~~  115 (219)
T 1vlm_A           66 -------K------IKIGVEPSERMAEIARKR----GVF----------VLKGTA-ENLPLKDESFDFALMVT--TICFV  115 (219)
T ss_dssp             -------T------CCEEEESCHHHHHHHHHT----TCE----------EEECBT-TBCCSCTTCEEEEEEES--CGGGS
T ss_pred             -------H------HEEEEECCHHHHHHHHHC----CCE----------EEECCH-HHCCCCCCCCCEECCCC--CHHHH
T ss_conf             -------5------869994999999999986----998----------998777-87899878733203132--01553


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             0001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       307 ~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      .+.                          ..+|+.+..-|+|    ||++.+..+
T Consensus       116 ~d~--------------------------~~~l~e~~r~Lkp----gG~l~i~~~  140 (219)
T 1vlm_A          116 DDP--------------------------ERALKEAYRILKK----GGYLIVGIV  140 (219)
T ss_dssp             SCH--------------------------HHHHHHHHHHEEE----EEEEEEEEE
T ss_pred             CCH--------------------------HHHHHHHHHHCCC----CCEEEEEEC
T ss_conf             489--------------------------9999999998586----828999976


No 88 
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334}
Probab=96.90  E-value=0.0072  Score=36.77  Aligned_cols=80  Identities=18%  Similarity=0.226  Sum_probs=48.8

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH------HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             6403117665404689999999998531005333225504666678------8999999989808875334566668234
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE------THAVCVAGMLIRRLESDPRRDLSKNIQQ  278 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~------tyaIak~nMli~g~~~d~~~~~~~NI~~  278 (674)
                      ++.+|.|-.||||++.....+.+   ++      ..++.|.|+++.      +...|+.++-=.+....      -.+..
T Consensus        43 pG~rVLDiGCG~G~~t~~la~~~---g~------~~~V~gvD~s~~~~~~~~~l~~A~~~~~~~~~~~~------i~~~~  107 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQV---GS------SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR------LTVHF  107 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH---CT------TCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGG------EEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHH---CC------CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC------CCEEH
T ss_conf             86989996653885789999983---87------77523476777776666899999999885577774------01020


Q ss_pred             CCCCCCC--CCCCCEEEEEEECC
Q ss_conf             7545799--98664189998168
Q gi|254780836|r  279 GSTLSKD--LFTGKRFHYCLSNP  299 (674)
Q Consensus       279 GdTL~~d--~~~~~kFD~vlaNP  299 (674)
                      +|....+  .+++.+||.|+++=
T Consensus       108 ~d~~~~~~lp~~~~sFD~V~~~~  130 (275)
T 3bkx_A          108 NTNLSDDLGPIADQHFDRVVLAH  130 (275)
T ss_dssp             SCCTTTCCGGGTTCCCSEEEEES
T ss_pred             HHHHHHCCCCCCCCCCCEEEEEE
T ss_conf             01544024764457626897801


No 89 
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.88  E-value=0.008  Score=36.47  Aligned_cols=102  Identities=13%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      +|+|-.||+|.+...    +...        ...++|.|+++....+|+.+.-..+.+..        ....|-...  .
T Consensus       123 ~vLDiGcG~G~~~~~----la~~--------g~~v~gvD~s~~~i~~a~~~~~~~~~~~~--------~~~~d~~~~--~  180 (286)
T 3m70_A          123 KVLDLGCGQGRNSLY----LSLL--------GYDVTSWDHNENSIAFLNETKEKENLNIS--------TALYDINAA--N  180 (286)
T ss_dssp             EEEEESCTTCHHHHH----HHHT--------TCEEEEEESCHHHHHHHHHHHHHTTCCEE--------EEECCGGGC--C
T ss_pred             EEEEECCCCCHHHHH----HHHC--------CCEEEEEECCHHHHHHHHHHHHHCCCCCE--------EEECHHHHH--C
T ss_conf             799983779899999----9858--------99799998988999999986542266202--------444002211--0


Q ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             66418999816856765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      ...+||+|+++--+.-                        +|+. + --.++..+...|++    ||++.++..
T Consensus       181 ~~~~fD~I~~~~~l~~------------------------l~~~-~-~~~~l~~~~~~Lkp----gG~l~i~~~  224 (286)
T 3m70_A          181 IQENYDFIVSTVVFMF------------------------LNRE-R-VPSIIKNMKEHTNV----GGYNLIVAA  224 (286)
T ss_dssp             CCSCEEEEEECSSGGG------------------------SCGG-G-HHHHHHHHHHTEEE----EEEEEEEEE
T ss_pred             CCCCCCEEEEEEEEEC------------------------CCHH-H-HHHHHHHHHHHCCC----CEEEEEEEE
T ss_conf             1356757878607763------------------------8878-9-99999999997298----839999980


No 90 
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.87  E-value=0.025  Score=33.31  Aligned_cols=74  Identities=11%  Similarity=0.051  Sum_probs=45.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-.||+|.+.....    .   . +   ...+.|.++++...+.|+..  .....       .-+...+|-. +-.
T Consensus        44 ~~iLDiGCG~G~~~~~L~----~---~-g---~~~v~giD~s~~~i~~~~~~--~~~~~-------~~~~~~~D~~-~l~  102 (215)
T 2pxx_A           44 DRILVLGCGNSALSYELF----L---G-G---FPNVTSVDYSSVVVAAMQAC--YAHVP-------QLRWETMDVR-KLD  102 (215)
T ss_dssp             CCEEEETCTTCSHHHHHH----H---T-T---CCCEEEEESCHHHHHHHHHH--TTTCT-------TCEEEECCTT-SCC
T ss_pred             CEEEEECCCCCHHHHHHH----H---C-C---CCEEEEEECCHHHHHHHHHH--HCCCC-------EEEEECCCCC-CCC
T ss_conf             989996377779999999----8---4-8---98399982762566799998--34786-------3543214544-577


Q ss_pred             CCCCEEEEEEECCCC
Q ss_conf             866418999816856
Q gi|254780836|r  287 FTGKRFHYCLSNPPF  301 (674)
Q Consensus       287 ~~~~kFD~vlaNPPF  301 (674)
                      +++..||+|+++--+
T Consensus       103 ~~~~sFD~Vi~~~~l  117 (215)
T 2pxx_A          103 FPSASFDVVLEKGTL  117 (215)
T ss_dssp             SCSSCEEEEEEESHH
T ss_pred             CCCCCEEEEEECCCH
T ss_conf             899977899999745


No 91 
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.86  E-value=0.017  Score=34.42  Aligned_cols=109  Identities=15%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             CCCCCCCCHHH-----HHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             66575368179-----9999999731784011013877640311766540468999999999853100533322550466
Q gi|254780836|r  172 EGAEDFMTPRD-----VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE  246 (674)
Q Consensus       172 ~~aGeffTPR~-----Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE  246 (674)
                      +++.=||-|+.     +.-++++..          ++   .+|+|+.||||..   +..|.++.+.       ..++..|
T Consensus        22 ~~~~vFYNp~~~~nRDlsv~~~~~~----------~~---~~iLD~~sasG~r---~iRya~E~~~-------~~V~~nD   78 (378)
T 2dul_A           22 YDSPVFYNPRMALNRDIVVVLLNIL----------NP---KIVLDALSATGIR---GIRFALETPA-------EEVWLND   78 (378)
T ss_dssp             ---CCCCCGGGHHHHHHHHHHHHHH----------CC---SEEEESSCTTSHH---HHHHHHHSSC-------SEEEEEE
T ss_pred             CCCCEECCHHHHHHHHHHHHHHHHH----------CC---CEEEECCCCCHHH---HHHHHHHCCC-------CEEEEEE
T ss_conf             6686040866764316999999982----------99---9899978872299---9999985899-------8899996


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCC------CC--CCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             66788999999989808875334566------66--823475457999866418999816856765
Q gi|254780836|r  247 LEPETHAVCVAGMLIRRLESDPRRDL------SK--NIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       247 in~~tyaIak~nMli~g~~~d~~~~~------~~--NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      +|+.+..+.+.|+-+.++........      ..  .+..+|...--.-...+||+|--+| ||..
T Consensus        79 i~~~A~~~i~~N~~~N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~~DvIDiDP-fGsp  143 (378)
T 2dul_A           79 ISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-FGSP  143 (378)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-SSCC
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEECCCC-CCCH
T ss_conf             9989999999999970865334333433224554367521127889874478774331389-9981


No 92 
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.85  E-value=0.0067  Score=37.00  Aligned_cols=166  Identities=14%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      |-||---..+-+.+.++          .|.++.+|+|-||+.||=-+...+.+.         ....++..|+++.-..+
T Consensus        81 G~~yiQd~sS~l~~~~L----------~~~~g~~VLDlCAAPGGKt~~la~~l~---------~~g~l~and~~~~R~~~  141 (464)
T 3m6w_A           81 GLYYIQEPSAQAVGVLL----------DPKPGERVLDLAAAPGGKTTHLAARMG---------GKGLLLANEVDGKRVRG  141 (464)
T ss_dssp             TSEEECCTTTHHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHTT---------TCSEEEEECSCHHHHHH
T ss_pred             CEEEEECHHHHHHHHHC----------CCCCCCEEEEECCCCCCHHHHHHHHHH---------CCCEEEECCCCHHHHHH
T ss_conf             84999488999999972----------999999798836587655999998853---------58357622431788888


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCC--CCCC-CC
Q ss_conf             99998980887533456666823475457999866418999816856765--3100011123442266665--3577-77
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGR--FGPG-LP  329 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~R--f~~g-lP  329 (674)
                      .+.|+--.|.+..        |...|.-.-......+||.||..+|-+-+  |.++           .+.+  +... +-
T Consensus       142 l~~nl~r~g~~~~--------v~~~d~~~l~~~~~~~fD~ILvDaPCSG~G~~rk~-----------p~~~~~~~~~~~~  202 (464)
T 3m6w_A          142 LLENVERWGAPLA--------VTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKD-----------REAARHWGPSAPK  202 (464)
T ss_dssp             HHHHHHHHCCCCE--------EECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTC-----------TTSGGGCCTTHHH
T ss_pred             HHHHHHHHCCCEE--------EEECCHHHHHCCCCCCCCEEEECCCCCCCCCCCCC-----------CHHHHCCCHHHHH
T ss_conf             9888886188616--------87232243320466644379844876667632338-----------0242205877899


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             4770659999999996146657880799973897134776443268999999884946
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i  387 (674)
                      .-+.-|.--|.+.+..|++    ||+++-..  -+++.   .-+|..|+..|=++.-+
T Consensus       203 ~l~~~Q~~iL~~A~~~Lkp----GG~LVYST--CS~~~---eENE~vV~~~L~~~~~~  251 (464)
T 3m6w_A          203 RMAEVQKALLAQASRLLGP----GGVLVYST--CTFAP---EENEGVVAHFLKAHPEF  251 (464)
T ss_dssp             HHHHHHHHHHHHHHTTEEE----EEEEEEEE--SCCCG---GGTHHHHHHHHHHCTTE
T ss_pred             HHHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCH---HHHHHHHHHHHHHCCCC
T ss_conf             9999999999999987188----98899996--99986---87799999999869997


No 93 
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=96.85  E-value=0.026  Score=33.19  Aligned_cols=169  Identities=14%  Similarity=0.084  Sum_probs=86.9

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r  178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      +-|+ =.+|-+.++- .. +.+  .+.++.+|+|-+||||++.+...+.+.    .     ...+||.|+++...+.++.
T Consensus        51 w~p~-rskl~a~i~~-~l-~~l--~i~pG~~VLDlG~G~G~~~~~la~~vg----~-----~G~V~avD~s~~~l~~l~~  116 (227)
T 1g8a_A           51 WNPN-RSKLGAAIMN-GL-KNF--PIKPGKSVLYLGIASGTTASHVSDIVG----W-----EGKIFGIEFSPRVLRELVP  116 (227)
T ss_dssp             CCTT-TCHHHHHHHT-TC-CCC--CCCTTCEEEEETTTSTTHHHHHHHHHC----T-----TSEEEEEESCHHHHHHHHH
T ss_pred             ECCC-HHHHHHHHHC-CH-HHC--CCCCCCEEEEEECCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHH
T ss_conf             6785-3689999970-35-316--989999999971787889999999848----9-----9669999899999999998


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             989808875334566668234754--579998664189998168567653100011123442266665357777477065
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS  335 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdT--L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~  335 (674)
                      +.--++..         +...+|.  ..........+|+|.+..+.--                              ..
T Consensus       117 ~~~~~~ni---------~~v~~da~~~~~~~~~~~~vd~v~~~~~~~~------------------------------~~  157 (227)
T 1g8a_A          117 IVEERRNI---------VPILGDATKPEEYRALVPKVDVIFEDVAQPT------------------------------QA  157 (227)
T ss_dssp             HHSSCTTE---------EEEECCTTCGGGGTTTCCCEEEEEECCCSTT------------------------------HH
T ss_pred             HHHHCCCC---------EEEEEECCCHHHCCCCCCEEEEEEEEECCCC------------------------------CH
T ss_conf             78766983---------4999876794465445671999997600054------------------------------06


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHH---HHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf             9999999996146657880799973897134776443268---99999988494-6888317677655788616999994
Q gi|254780836|r  336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES---EIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWILS  411 (674)
Q Consensus       336 ~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs---~IRk~lie~d~-ieaII~LP~~lFynTgI~t~Iwil~  411 (674)
                      -.|++++...||+    ||+..++.....-. ... ..+.   ++. .+++.++ +.-.+.|.+   |.++  -+++|..
T Consensus       158 ~~~l~~~~~~Lkp----GG~lvi~~k~~~~~-~~~-~~~~~~~~v~-~l~~~gf~~~e~i~L~p---~~~~--H~~vv~r  225 (227)
T 1g8a_A          158 KILIDNAEVYLKR----GGYGMIAVKSRSID-VTK-EPEQVFREVE-RELSEYFEVIERLNLEP---YEKD--HALFVVR  225 (227)
T ss_dssp             HHHHHHHHHHEEE----EEEEEEEEEGGGTC-TTS-CHHHHHHHHH-HHHHTTSEEEEEEECTT---TSSS--EEEEEEE
T ss_pred             HHHHHHHHHHCCC----CCEEEEEEECCCCC-CCC-CHHHHHHHHH-HHHHCCCEEEEEECCCC---CCCC--EEEEEEE
T ss_conf             8999999984599----95999999753377-888-9899999999-99981998999976698---8675--5999999


No 94 
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=96.82  E-value=0.013  Score=35.00  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      +.+|.|-.||+|.++....    +..+      ...++|.|+++...+.++.+.--.+...       -....||-. +-
T Consensus        38 g~rVLDiGcG~G~~~~~la----~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------v~~~~~d~~-~l   99 (276)
T 3mgg_A           38 GAKVLEAGCGIGAQTVILA----KNNP------DAEITSIDISPESLEKARENTEKNGIKN-------VKFLQANIF-SL   99 (276)
T ss_dssp             TCEEEETTCTTSHHHHHHH----HHCT------TSEEEEEESCHHHHHHHHHHHHHTTCCS-------EEEEECCGG-GC
T ss_pred             CCEEEEECCCCCHHHHHHH----HHCC------CCEEEEEECCHHHHHHHHHHHHHCCCCC-------CCEEECCHH-HC
T ss_conf             9989995585889999999----8799------9789999795676322221122115566-------421533523-20


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             986641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      .++...||.|+++=-+  .|=                      |   |. ..+|+.+-.-|||    ||++++..
T Consensus       100 ~~~~~sfD~V~~~~~l--~~~----------------------~---d~-~~~l~~~~rvLkp----gG~l~~~~  142 (276)
T 3mgg_A          100 PFEDSSFDHIFVCFVL--EHL----------------------Q---SP-EEALKSLKKVLKP----GGTITVIE  142 (276)
T ss_dssp             CSCTTCEEEEEEESCG--GGC----------------------S---CH-HHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CCCCCCCCCHHHHHHH--HHC----------------------H---HH-HHHHHHHHHHCCC----CCEEEEEE
T ss_conf             4777881211111246--313----------------------0---59-9999999997480----85899997


No 95 
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, DNA binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=96.78  E-value=0.0026  Score=39.61  Aligned_cols=28  Identities=11%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             CCCCCCCCC-CCCCCCEEEEEEECCCCCC
Q ss_conf             234754579-9986641899981685676
Q gi|254780836|r  276 IQQGSTLSK-DLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       276 I~~GdTL~~-d~~~~~kFD~vlaNPPFg~  303 (674)
                      |..||+|.- ...++..+|.|++-|||++
T Consensus        42 ~~~gDcle~l~~lpd~SVDLIitDPPYn~   70 (319)
T 1eg2_A           42 YDVCDCLDTLAKLPDDSVQLIICDPPYNI   70 (319)
T ss_dssp             EEECCHHHHHHTSCTTCEEEEEECCCSBC
T ss_pred             EEECCHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf             99652899982286887557998999988


No 96 
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.76  E-value=0.0024  Score=39.84  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r  170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      +|+.-||+| +-..|++-||+.+          .+....+|++--||.|. ||.+.   .+.+        -.+++.|++
T Consensus         2 ~n~~LGQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGPG~G~-LT~~L---l~~~--------~~v~aiE~D   59 (285)
T 1zq9_A            2 SNTGIGQHILKNPLIINSIIDKA----------ALRPTDVVLEVGPGTGN-MTVKL---LEKA--------KKVVACELD   59 (285)
T ss_dssp             ------CCEECCHHHHHHHHHHT----------CCCTTCEEEEECCTTST-THHHH---HHHS--------SEEEEEESC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHH----------CCCCCCEEEEECCCCHH-HHHHH---HHCC--------CCEEEEEEC
T ss_conf             99986846077989999999970----------89999979996897219-99999---8049--------966999987


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             78899999998980887533456666823475457999866418999816856765
Q gi|254780836|r  249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      +.....-+.  ...+...    ...-.+..||-|.-|..   .+..|++|.||+++
T Consensus        60 ~~l~~~L~~--~~~~~~~----~~~~~ii~~D~l~~d~~---~~~~vVgNLPYnIs  106 (285)
T 1zq9_A           60 PRLVAELHK--RVQGTPV----ASKLQVLVGDVLKTDLP---FFDTCVANLPYQIS  106 (285)
T ss_dssp             HHHHHHHHH--HHTTSTT----GGGEEEEESCTTTSCCC---CCSEEEEECCGGGH
T ss_pred             HHHHHHHHH--HHHCCCC----CCCEEEECHHHHHCHHH---HHHHEECCCHHHHH
T ss_conf             899999998--7620121----00344540665411055---44321102216568


No 97 
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=96.76  E-value=0.026  Score=33.11  Aligned_cols=177  Identities=14%  Similarity=0.136  Sum_probs=95.8

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      |.+ +..+....++-.++         .|.+...|.|.|||.||-.+.....+.    .     ...++..|++..-...
T Consensus        63 G~~-~iQD~sS~l~~~~l---------~~~~g~~vLD~CaapGgKt~~i~~~~~----~-----~~~i~a~d~~~~rl~~  123 (274)
T 3ajd_A           63 GYY-MPQSISSMIPPIVL---------NPREDDFILDMCAAPGGKTTHLAQLMK----N-----KGTIVAVEISKTRTKA  123 (274)
T ss_dssp             TSE-EECCSGGGHHHHHH---------CCCTTCEEEETTCTTCHHHHHHHHHTT----T-----CSEEEEEESCHHHHHH
T ss_pred             CEE-EEECHHHHCHHHHC---------CCCCCCEEEEECCCCCHHHHHHHHHHH----C-----CCCEEEECCCHHHHHH
T ss_conf             809-99455651589758---------999999799907888688999999853----8-----6833873277889999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9999898088753345666682347545799---9866418999816856765--3100011123442266665357777
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLP  329 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d---~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~glP  329 (674)
                      .+.|+--.|....       .+..+|...-+   .....+||.||..||=+-.  |....+ +..+           .+.
T Consensus       124 l~~~~~r~g~~~~-------~~~~~d~~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~~~~~-~~~~-----------~~~  184 (274)
T 3ajd_A          124 LKSNINRMGVLNT-------IIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRN-VSEE-----------DIK  184 (274)
T ss_dssp             HHHHHHHTTCCSE-------EEEESCHHHHHHHHHHTTCCEEEEEEEECCC-------------HH-----------HHT
T ss_pred             HHHHHHHHHCCCC-------CEECCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHH-HHHH-----------HHH
T ss_conf             9887876511441-------00224376766653145445767996388766633131012-1123-----------678


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf             4770659999999996146657880799973897134776443268999999884946888317677655
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF  399 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy  399 (674)
                      .-+.-|.-.|.|.+.-+++    ||++.  -.--+++.-   -.|..|++.|=++.-.+ ++.++...+.
T Consensus       185 ~l~~~Q~~lL~~a~~~lk~----gG~lv--YsTCSl~~e---ENE~vV~~~L~~~~~~~-l~~~~~~~~~  244 (274)
T 3ajd_A          185 YCSLRQKELIDIGIDLLKK----DGELV--YSTCSMEVE---ENEEVIKYILQKRNDVE-LIIIKANEFK  244 (274)
T ss_dssp             GGGTCHHHHHHHHHHHEEE----EEEEE--EEESCCCTT---SSHHHHHHHHHHCSSEE-EECCCSTTCT
T ss_pred             HHHHHHHHHHHHHHHHCCC----CCEEE--EEEECCCHH---HHHHHHHHHHHHCCCEE-EEECCCCCCC
T ss_conf             8999999999999974088----83899--973058778---86999999998689839-9706720035


No 98 
>1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=96.75  E-value=0.0013  Score=41.55  Aligned_cols=127  Identities=19%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      ....+.+.++|        .  +....+|+|.+||||.++....+        .+    ..+.|.|+++.+.++|+.+..
T Consensus        42 ~~~~~~~~~~l--------~--~~~~~~vLDiGcG~G~~~~~la~--------~g----~~v~gvD~s~~ml~~a~~~~~   99 (292)
T 1xva_A           42 AEYKAWLLGLL--------R--QHGCHRVLDVACGTGVDSIMLVE--------EG----FSVTSVDASDKMLKYALKERW   99 (292)
T ss_dssp             HHHHHHHHHHH--------H--HTTCCEEEESSCTTSHHHHHHHH--------TT----CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------H--HCCCCEEEEECCCCCHHHHHHHH--------CC----CEEEEEECCHHHHHHHHHHHH
T ss_conf             99999999964--------1--31849999904788499999997--------79----969999899999999999998


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-HHHH
Q ss_conf             80887533456666823475457--9998664189998168-567653100011123442266665357777477-0659
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRFHYCLSNP-PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSM  336 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~--~d~~~~~kFD~vlaNP-PFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s-dg~~  336 (674)
                      -++........   .+..++.+.  .+.....+||.|++.- -|.  +      +..              +..+ +-..
T Consensus       100 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~--~------l~~--------------~~~~~~~~~  154 (292)
T 1xva_A          100 NRRKEPAFDKW---VIEEANWLTLDKDVPAGDGFDAVICLGNSFA--H------LPD--------------SKGDQSEHR  154 (292)
T ss_dssp             HTTTSHHHHTC---EEEECCGGGHHHHSCCTTCEEEEEECSSCGG--G------SCC--------------TTSSSHHHH
T ss_pred             HCCCCCCCCEE---EEEECCCCCCCCCCCCCCCEEEEEECCCHHH--H------CCC--------------CCCCHHHHH
T ss_conf             64446563135---6641110124434566676139999062264--4------588--------------443768999


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             9999999961466578807999
Q gi|254780836|r  337 LFLMHLANKLELPPNGGGRAAI  358 (674)
Q Consensus       337 lFlqh~i~klk~~~~~ggr~aI  358 (674)
                      .+|+.+...|+|    ||+..+
T Consensus       155 ~~l~~~~~~Lkp----gG~li~  172 (292)
T 1xva_A          155 LALKNIASMVRP----GGLLVI  172 (292)
T ss_dssp             HHHHHHHHTEEE----EEEEEE
T ss_pred             HHHHHHHHHCCC----CCEEEE
T ss_conf             999999987882----828999


No 99 
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.50A {Clostridium acetobutylicum atcc 824} SCOP: c.66.1.43
Probab=96.75  E-value=0.0046  Score=38.05  Aligned_cols=121  Identities=12%  Similarity=0.157  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      ...+..+.+++-        .......+|+|.+||||.++...    .+    .+    ..+.|.|+++.+-++|+...-
T Consensus        21 ~~~~~~~~~~~~--------~~~~~~~~iLDlGCGtG~~~~~l----~~----~g----~~v~gvD~S~~ml~~a~~~~~   80 (246)
T 1y8c_A           21 KKWSDFIIEKCV--------ENNLVFDDYLDLACGTGNLTENL----CP----KF----KNTWAVDLSQEMLSEAENKFR   80 (246)
T ss_dssp             HHHHHHHHHHHH--------TTTCCTTEEEEETCTTSTTHHHH----GG----GS----SEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------HHCCCCCEEEEEECCCCHHHHHH----HH----CC----CEEEEEECCHHHHHHHHHHCC
T ss_conf             999999999999--------73899892999807462999999----97----49----959999674999998763112


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             80887533456666823475457999866418999816-85676531000111234422666653577774770659999
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL  339 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN-PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl  339 (674)
                      -.+.+.        ....||-..-+  ...+||+|++- -.|+.                        ++...+ -..++
T Consensus        81 ~~~~~~--------~~~~~d~~~~~--~~~~fD~V~~~~~~~~~------------------------~~~~~~-~~~~l  125 (246)
T 1y8c_A           81 SQGLKP--------RLACQDISNLN--INRKFDLITCCLDSTNY------------------------IIDSDD-LKKYF  125 (246)
T ss_dssp             HTTCCC--------EEECCCGGGCC--CSCCEEEEEECTTGGGG------------------------CCSHHH-HHHHH
T ss_pred             CCCCCC--------CCCCCCHHHHH--CCCCCCCCCEEEEEEEC------------------------CCCHHH-HHHHH
T ss_conf             234432--------22346677751--03341224121022213------------------------688789-99999


Q ss_pred             HHHHHHHCCCCCCCCEEEEEC
Q ss_conf             999996146657880799973
Q gi|254780836|r  340 MHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       340 qh~i~klk~~~~~ggr~aIV~  360 (674)
                      +++-..|+|    ||+..+-+
T Consensus       126 ~~i~~~Lkp----gG~li~~~  142 (246)
T 1y8c_A          126 KAVSNHLKE----GGVFIFDI  142 (246)
T ss_dssp             HHHHTTEEE----EEEEEEEE
T ss_pred             HHHHHHCCC----CEEEEEEE
T ss_conf             999997499----80999994


No 100
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=96.73  E-value=0.0017  Score=40.89  Aligned_cols=111  Identities=17%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             CCCCCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCC
Q ss_conf             8234754579-9986641899981685676531000111234422666653577774770659-9999999961466578
Q gi|254780836|r  275 NIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNG  352 (674)
Q Consensus       275 NI~~GdTL~~-d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~  352 (674)
                      .|.+||+|.- ...++..+|.|++-||||+. +.+.           +.     .  .+..+| -|+...+..+......
T Consensus         6 ~i~~gD~l~~l~~l~d~sVDlIitdPPY~~~-~~~~-----------d~-----~--~~~~~y~~~~~~~~~e~~rvLk~   66 (260)
T 1g60_A            6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLS-KADW-----------DS-----F--DSHNEFLAFTYRWIDKVLDKLDK   66 (260)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSC-SSGG-----------GC-----C--SSHHHHHHHHHHHHHHHHHHEEE
T ss_pred             EEEECHHHHHHHHCCCCCCCEEEECCCCCCC-CCCC-----------CC-----C--CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6771319999853867865879989998887-7757-----------77-----8--89999999999999999888715


Q ss_pred             CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE--EEE-ECCCCCC-----CCCCCCEEEEEEECCC
Q ss_conf             807999738971347764432689999998849468--883-1767765-----5788616999994688
Q gi|254780836|r  353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIV-ALPTDLF-----FRTNIATYLWILSNRK  414 (674)
Q Consensus       353 ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie--aII-~LP~~lF-----ynTgI~t~Iwil~k~K  414 (674)
                      ||.  ++..+++.       ....+...|.+..+.-  -|| ..+....     ++ -.-.++++++|..
T Consensus        67 ~g~--~~~~~~~~-------~~~~~~~~l~~~~~~~~~~iiW~k~~~~~~~~~~~~-~~~e~~~~~~k~~  126 (260)
T 1g60_A           67 DGS--LYIFNTPF-------NCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFS-TGQETILFFSKSK  126 (260)
T ss_dssp             EEE--EEEEECHH-------HHHHHHHHHHHTTCEEEEEEEECCCCSCCCCSSSCB-CCCEEEEEEESST
T ss_pred             CCC--CCCCCCCH-------HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCC-CCCCEEEEECCCC
T ss_conf             886--32015704-------789999998751443026899941446544466677-6411133103576


No 101
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold; HET: SAM; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=96.71  E-value=0.028  Score=32.93  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL  282 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL  282 (674)
                      ..++.+|+|-.||+||++..+.+..       +    ..+.|.+++++..+.|+...--.|....      ..+..+|..
T Consensus        88 l~~g~rVLDIGCG~G~~a~~~a~~~-------g----~~v~gi~is~~q~~~a~~~~~~~gl~~~------~~~~~~d~~  150 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERF-------D----VNVIGLTLSKNQHARCEQVLASIDTNRS------RQVLLQGWE  150 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-------C----CEEEEEESCHHHHHHHHHHHHTSCCSSC------EEEEESCGG
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHC-------C----CEEEEEECCHHHHHHHHHHHHHCCCCCH------HHHHHCCHH
T ss_conf             9999989897887369999999836-------9----6389998999999999999876387410------016541065


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             799986641899981685676531000111234422666653577774770659-9999999961466578807999
Q gi|254780836|r  283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAI  358 (674)
Q Consensus       283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aI  358 (674)
                      .    ...+||.|++.==|-             +           +|..   ++ .|++.+-..|||    ||+++|
T Consensus       151 ~----~~~~fD~i~si~~~e-------------h-----------~~~~---~~~~~f~~~~r~Lkp----GG~l~i  192 (318)
T 2fk8_A          151 D----FAEPVDRIVSIEAFE-------------H-----------FGHE---NYDDFFKRCFNIMPA----DGRMTV  192 (318)
T ss_dssp             G----CCCCCSEEEEESCGG-------------G-----------TCGG---GHHHHHHHHHHHSCT----TCEEEE
T ss_pred             H----HCCCCCEEEEHHHHH-------------H-----------CCCH---HHHHHHHHHHHHCCC----CCEEEE
T ss_conf             5----037876352046888-------------6-----------0531---189999999976386----873999


No 102
>3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413}
Probab=96.70  E-value=0.002  Score=40.42  Aligned_cols=115  Identities=15%  Similarity=0.043  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r  178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      .-|| +++-+.+.+          ...+..+|.|-.||||.++..    +.+.        ...++|.|+++..-+.|+ 
T Consensus        18 ~~~~-~~~~~~~~l----------~l~~~~~vLDvGcG~G~~~~~----l~~~--------~~~v~gvD~s~~~~~~a~-   73 (261)
T 3ege_A           18 PDIR-IVNAIINLL----------NLPKGSVIADIGAGTGGYSVA----LANQ--------GLFVYAVEPSIVMRQQAV-   73 (261)
T ss_dssp             CCHH-HHHHHHHHH----------CCCTTCEEEEETCTTSHHHHH----HHTT--------TCEEEEECSCHHHHHSSC-
T ss_pred             CCHH-HHHHHHHHC----------CCCCCCEEEEECCCCCHHHHH----HHHC--------CCEEEEEECCCCCCCCCC-
T ss_conf             8889-999999965----------999969999964888899999----9976--------998999974453121000-


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             98980887533456666823475457999866418999816856765310001112344226666535777747706599
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML  337 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~l  337 (674)
                             ..     ..-....||-..- .+++..||+|+++-.+-  |-                      |   |- -.
T Consensus        74 -------~~-----~~~~~~~~d~~~l-~~~~~~fD~v~~~~~l~--~~----------------------~---d~-~~  112 (261)
T 3ege_A           74 -------VH-----PQVEWFTGYAENL-ALPDKSVDGVISILAIH--HF----------------------S---HL-EK  112 (261)
T ss_dssp             -------CC-----TTEEEECCCTTSC-CSCTTCBSEEEEESCGG--GC----------------------S---SH-HH
T ss_pred             -------CC-----CCHHHHHHHHHHC-CCCCCCCCEEEECCHHH--HC----------------------C---CH-HH
T ss_conf             -------12-----2101333445430-25676013775401277--46----------------------8---99-99


Q ss_pred             HHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             999999961466578807999738
Q gi|254780836|r  338 FLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       338 Flqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      ++..+...|||    ||++.++.+
T Consensus       113 ~l~e~~r~Lkp----gG~l~~~~~  132 (261)
T 3ege_A          113 SFQEMQRIIRD----GTIVLLTFD  132 (261)
T ss_dssp             HHHHHHHHBCS----SCEEEEEEC
T ss_pred             HHHHHHHHCCC----CCEEEEEEC
T ss_conf             99999998281----858999987


No 103
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis}
Probab=96.68  E-value=0.005  Score=37.82  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|-.||+|.++....    ..    .    ..++|.|+++...+.|+-..  .+.+        -.+..++.. +-.
T Consensus        55 ~~VLDiGcG~G~~~~~l~----~~----~----~~v~giD~s~~~l~~a~~~~--~~~~--------~~~~~~~~~-~l~  111 (242)
T 3l8d_A           55 AEVLDVGCGDGYGTYKLS----RT----G----YKAVGVDISEVMIQKGKERG--EGPD--------LSFIKGDLS-SLP  111 (242)
T ss_dssp             CEEEEETCTTSHHHHHHH----HT----T----CEEEEEESCHHHHHHHHTTT--CBTT--------EEEEECBTT-BCS
T ss_pred             CEEEEECCCCCHHHHHHH----HC----C----CEEEEEECCHHHHHHHHHCC--CCCC--------CCCCCCCCC-CCC
T ss_conf             979996588859999999----64----9----98999979746679987503--4442--------222234435-678


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             866418999816856765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      +++.+||+|+++=  ...|                      +|..    ..+++.+...|||    ||++.+...
T Consensus       112 ~~~~~fD~i~~~~--~l~h----------------------i~d~----~~~l~~~~r~Lkp----gG~~~i~~~  154 (242)
T 3l8d_A          112 FENEQFEAIMAIN--SLEW----------------------TEEP----LRALNEIKRVLKS----DGYACIAIL  154 (242)
T ss_dssp             SCTTCEEEEEEES--CTTS----------------------SSCH----HHHHHHHHHHEEE----EEEEEEEEE
T ss_pred             CCCCCEEEEEEEC--HHHH----------------------CCCH----HHHHHHHHHHCCC----CCEEEEEEE
T ss_conf             8878568985500--2884----------------------4799----9999999998584----828999996


No 104
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=96.67  E-value=0.035  Score=32.34  Aligned_cols=208  Identities=11%  Similarity=0.015  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999986227665--75368179999999973178401101387764031176654046899999999985310053
Q gi|254780836|r  159 YEHLIRRFGSEVSEGA--EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI  236 (674)
Q Consensus       159 yE~LIrkFae~~~~~a--GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~  236 (674)
                      .|+--.++.+  ++.+  .+.-. ...++.+-+++          ......+|+||.||+|=-+.    |+.+.    + 
T Consensus        33 ~e~W~~~w~~--~~~~~~~~~~~-p~L~~~~~~~~----------~~~~~~rvL~pgCG~G~da~----~LA~~----G-   90 (252)
T 2gb4_A           33 LEDWKEKWVT--RHISFHQEQGH-QLLKKHLDTFL----------KGQSGLRVFFPLCGKAIEMK----WFADR----G-   90 (252)
T ss_dssp             HHHHHHHHHH--TCCTTCCTTCC-HHHHHHHHHHH----------TTCCSCEEEETTCTTCTHHH----HHHHT----T-
T ss_pred             HHHHHHHHCC--CCCCCCCCCCC-HHHHHHHHHHC----------CCCCCCEEEEECCCCHHHHH----HHHHC----C-
T ss_conf             8899999816--99888678899-89999999860----------88999989998987808899----99848----9-


Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCCHHHHHHH
Q ss_conf             332255046666788999999989808875334566668234754579998664189998168567-6531000111234
Q gi|254780836|r  237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKE  315 (674)
Q Consensus       237 ~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg-~~Wk~~~~~v~~e  315 (674)
                         ..++|.|+++..-..++.+.-+......     ...+. ++.+  -.+.+..++++.++...- .++....+.+   
T Consensus        91 ---~~V~gvD~S~~Ai~~a~~~~~~~~~~~~-----~~~~~-~~~~--~~~~~~~i~~~~~D~f~~~~~~~~~~d~i---  156 (252)
T 2gb4_A           91 ---HTVVGVEISEIGIREFFAEQNLSYTEEP-----LAEIA-GAKV--FKSSSGSISLYCCSIFDLPRANIGKFDRI---  156 (252)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHTTCCEEEEE-----CTTST-TCEE--EEETTSSEEEEESCTTTGGGGCCCCEEEE---
T ss_pred             ---CEEEEECCCHHHHHHHHHHCCCCCCCCC-----CCCCC-CCCE--EECCCCCEEEEECCHHHCCCCCCCCCCCE---
T ss_conf             ---8489981629999999987545543122-----21003-6420--22147736899854332021123564300---


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCC--CCCHHHHHHHHHHCCC-EEEE-
Q ss_conf             422666653577774770659999999996146657880799973-8971347764--4326899999988494-6888-
Q gi|254780836|r  316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRA--GSGESEIRRWLLENDL-IEAI-  390 (674)
Q Consensus       316 ~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~a--gsGEs~IRk~lie~d~-ieaI-  390 (674)
                          .+.-+...+|+.-..  .+++++.+.|+|    ||++.++. +..+-..++.  +-.+.+||+.+ ...+ |+.+ 
T Consensus       157 ----~d~~~~~al~~~~r~--~y~~~l~~~Lkp----gG~lll~~~~~~~~~~~gpPf~vs~~El~~lf-~~~~~I~~le  225 (252)
T 2gb4_A          157 ----WDRGALVAINPGDHD--RYADIILSLLRK----EFQYLVAVLSYDPTKHAGPPFYVPSAELKRLF-GTKCSMQCLE  225 (252)
T ss_dssp             ----EESSSTTTSCGGGHH--HHHHHHHHTEEE----EEEEEEEEEECCTTSCCCSSCCCCHHHHHHHH-TTTEEEEEEE
T ss_pred             ----EEEEEEEECCHHHHH--HHHHHHHHHHCC----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH-CCCCEEEEEE
T ss_conf             ----356777635857778--999999986198----85799999315887779999989999999986-7997899976


Q ss_pred             -EECCCCCCCCCC---CCEEEEEEECC
Q ss_conf             -317677655788---61699999468
Q gi|254780836|r  391 -VALPTDLFFRTN---IATYLWILSNR  413 (674)
Q Consensus       391 -I~LP~~lFynTg---I~t~Iwil~k~  413 (674)
                       +..+..-+-+.|   +...+|.|+++
T Consensus       226 ~~~~~~~~~~~~gl~~~~e~~~~l~~k  252 (252)
T 2gb4_A          226 EVDALEERHKAWGLDYLFEKLYLLTEK  252 (252)
T ss_dssp             EEECCCGGGTTTTCSCCEEEEEEEEEC
T ss_pred             EECCCCCCHHHCCCCHHHHEEEEEEEC
T ss_conf             522567653342814574306888739


No 105
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.63  E-value=0.004  Score=38.44  Aligned_cols=172  Identities=9%  Similarity=0.056  Sum_probs=95.4

Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r  170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      .+++-|||| +-..|++-+|+.+          ......+|.+--||+|.+= ..   +.+.   .     ..+++.|++
T Consensus         4 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~LT-~~---L~~~---~-----~~v~avEiD   61 (244)
T 1qam_A            4 KNIKHSQNFITSKHNIDKIMTNI----------RLNEHDNIFEIGSGKGHFT-LE---LVQR---C-----NFVTAIEID   61 (244)
T ss_dssp             ------CCBCCCHHHHHHHHTTC----------CCCTTCEEEEECCTTSHHH-HH---HHHH---S-----SEEEEECSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHH-HH---HHHC---C-----CCEEEEEEC
T ss_conf             98888884147999999999956----------7899997999738871999-99---9855---5-----830699853


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             78899999998980887533456666823475457999866418999816856765310001112344226666535777
Q gi|254780836|r  249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL  328 (674)
Q Consensus       249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl  328 (674)
                      +......+....-    .     ..-.|..||-|.-|.-.... ..|++|-||+++=                       
T Consensus        62 ~~l~~~L~~~~~~----~-----~n~~ii~~D~l~~~~~~~~~-~~vv~NLPYnIss-----------------------  108 (244)
T 1qam_A           62 HKLCKTTENKLVD----H-----DNFQVLNKDILQFKFPKNQS-YKIFGNIPYNIST-----------------------  108 (244)
T ss_dssp             HHHHHHHHHHTTT----C-----CSEEEECCCGGGCCCCSSCC-CEEEEECCGGGHH-----------------------
T ss_pred             HHHHHHHHHHHCC----C-----CCEEEEECHHHCCCCCCCCC-EEEEEECHHHHHH-----------------------
T ss_conf             0177999974144----7-----76577300122256544675-4799743055238-----------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCC
Q ss_conf             747706599999999961466578807999738971---347764432689999998849468883176776557-8861
Q gi|254780836|r  329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP---LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA  404 (674)
Q Consensus       329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~---LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn-TgI~  404 (674)
                              -.|.+++..  ..   -.++.+++.--+   | .+..|+ =|-.-++   ..-++-+-..|++.||- -.+-
T Consensus       109 --------~Il~~ll~~--~~---~~~~~~mvQkEvA~Rl-~a~~g~-lsv~~~~---~~~~~~~~~V~~~~F~P~PkVd  170 (244)
T 1qam_A          109 --------DIIRKIVFD--SI---ADEIYLIVEYGFAKRL-LNTKRS-LALFLMA---EVDISILSMVPREYFHPKPKVN  170 (244)
T ss_dssp             --------HHHHHHHHS--CC---CSEEEEEEEHHHHHHH-TCTTSH-HHHHHTT---TEEEEEEEEECGGGSBSCCSSC
T ss_pred             --------HHHHHHCCC--CC---CCEEEEEEEEHHHHHH-HCCCCC-CHHHHHH---HHHCCCCCCCCHHHCCCCCCCE
T ss_conf             --------999875024--43---0003533100123312-302575-2355323---2232234556802056899833


Q ss_pred             EEEEEEECCC
Q ss_conf             6999994688
Q gi|254780836|r  405 TYLWILSNRK  414 (674)
Q Consensus       405 t~Iwil~k~K  414 (674)
                      .++.-|..++
T Consensus       171 S~vi~l~~k~  180 (244)
T 1qam_A          171 SSLIRLNRKK  180 (244)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEECC
T ss_conf             8999999789


No 106
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.62  E-value=0.0062  Score=37.19  Aligned_cols=99  Identities=11%  Similarity=0.186  Sum_probs=65.0

Q ss_pred             CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      -||+| +-..|++-||+.+          ......+|++--||+|.+ |.+   +.+   .     .-.+++.|+++...
T Consensus        20 LGQnFL~D~~i~~kIv~~~----------~~~~~d~VLEIGPG~G~L-T~~---Ll~---~-----~~~v~aiE~D~~l~   77 (299)
T 2h1r_A           20 QGQHLLKNPGILDKIIYAA----------KIKSSDIVLEIGCGTGNL-TVK---LLP---L-----AKKVITIDIDSRMI   77 (299)
T ss_dssp             ---CEECCHHHHHHHHHHH----------CCCTTCEEEEECCTTSTT-HHH---HTT---T-----SSEEEEECSCHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHH---C-----CCEEEEEECCCHHH
T ss_conf             7774378989999999845----------899989899968972799-999---982---3-----99079997770899


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             9999998980887533456666823475457999866418999816856765
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      ...+-.+.-.+..       ...+..||-+..+.   .++..|++|.||+++
T Consensus        78 ~~L~e~~~~~~~~-------~~~~i~~D~~~~~~---~~~~~vVgNLPY~IS  119 (299)
T 2h1r_A           78 SEVKKRCLYEGYN-------NLEVYEGDAIKTVF---PKFDVCTANIPYKIS  119 (299)
T ss_dssp             HHHHHHHHHTTCC-------CEEC----CCSSCC---CCCSEEEEECCGGGH
T ss_pred             HHHHHHHHHCCCC-------CCCCCCCCCCHHHC---CCCCEEECCCCHHHH
T ss_conf             9999754321333-------33320344200002---454346147884789


No 107
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.61  E-value=0.0091  Score=36.11  Aligned_cols=166  Identities=12%  Similarity=0.152  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      .|+..+....++-.+.         .|.+..+|.|-|||-||=-+...    +...      ...++..|+++.-....+
T Consensus       227 ~~~vQD~aSql~~~~l---------~~~~~~~VLD~CAaPGgKt~~la----~~~~------~~~i~a~d~~~~r~~~l~  287 (429)
T 1sqg_A          227 WVTVQDASAQGCMTWL---------APQNGEHILDLCAAPGGKTTHIL----EVAP------EAQVVAVDIDEQRLSRVY  287 (429)
T ss_dssp             SEEECCHHHHTHHHHH---------CCCTTCEEEEESCTTCHHHHHHH----HHCT------TCEEEEEESSTTTHHHHH
T ss_pred             EEEECCHHHHHHHHHC---------CCCCCCEEEEECCCCHHHHHHHH----HHCC------CCCCEEECCHHHHHHHHH
T ss_conf             4773514545677621---------84214414560688048999999----8622------246562234267788887


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CCCCC
Q ss_conf             998980887533456666823475457999866418999816856765--3100011123442266665357---77747
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GLPKI  331 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---glP~~  331 (674)
                      .|+-..|.....       +...+....+.....+||.||..||-+-.  |...           ++.||..   .+..-
T Consensus       288 ~~~~r~g~~~~~-------~~~~~~~~~~~~~~~~fD~VLlDaPCSg~G~~rr~-----------Pd~~~~~~~~~l~~l  349 (429)
T 1sqg_A          288 DNLKRLGMKATV-------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH-----------PDIKWLRRDRDIPEL  349 (429)
T ss_dssp             HHHHHTTCCCEE-------EECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTC-----------TTHHHHCCTTHHHHH
T ss_pred             HHHHHCCCCCEE-------ECCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCC-----------HHHHHHCCHHHHHHH
T ss_conf             778641643111-------02344331010354566459970760468443148-----------135331698889999


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             706599999999961466578807999738971347764432689999998849468
Q gi|254780836|r  332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE  388 (674)
Q Consensus       332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie  388 (674)
                      ..-|..-|.|....++    .||+++-..  -+++.-   -+|..|++.|=++.-.+
T Consensus       350 ~~~Q~~iL~~a~~~lk----~gG~LvYsT--CSi~~e---ENe~vV~~fL~~~~~~~  397 (429)
T 1sqg_A          350 AQLQSEILDAIWPHLK----TGGTLVYAT--CSVLPE---ENSLQIKAFLQRTADAE  397 (429)
T ss_dssp             HHHHHHHHHHHGGGEE----EEEEEEEEE--SCCCGG---GTHHHHHHHHHHCTTCE
T ss_pred             HHHHHHHHHHHHHHCC----CCCEEEEEE--CCCCHH---HCHHHHHHHHHHCCCCE
T ss_conf             9999999999998468----898899997--999846---58999999998589978


No 108
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=96.60  E-value=0.0023  Score=40.07  Aligned_cols=97  Identities=23%  Similarity=0.326  Sum_probs=58.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|..||||.++....+.    +        ..+.|.|++++..++|+.+.    .+        -+...||...-+ 
T Consensus        42 ~~VLDiGcG~G~~~~~la~~----g--------~~v~giD~S~~~l~~a~~~~----~~--------~~~~~~d~~~~~-   96 (239)
T 3bxo_A           42 SSLLDVACGTGTHLEHFTKE----F--------GDTAGLELSEDMLTHARKRL----PD--------ATLHQGDMRDFR-   96 (239)
T ss_dssp             CEEEEETCTTSHHHHHHHHH----H--------SEEEEEESCHHHHHHHHHHC----TT--------CEEEECCTTTCC-
T ss_pred             CEEEEEECCCCHHHHHHHHC----C--------CEEEEEECCHHHHHHHHHCC----CC--------CCCCCCCCCCCC-
T ss_conf             98999817584999999973----9--------96999969678878886336----54--------422322112677-


Q ss_pred             CCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             866418999816-856765310001112344226666535777747706599999999961466578807999
Q gi|254780836|r  287 FTGKRFHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI  358 (674)
Q Consensus       287 ~~~~kFD~vlaN-PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI  358 (674)
                       ...+||.|++- ==++  |                      ++.. +....+++++.+.||+    ||++.+
T Consensus        97 -~~~~fD~v~~~~~s~~--~----------------------l~~~-~~~~~~l~~~~~~Lk~----gG~li~  139 (239)
T 3bxo_A           97 -LGRKFSAVVSMFSSVG--Y----------------------LKTT-EELGAAVASFAEHLEP----GGVVVV  139 (239)
T ss_dssp             -CSSCEEEEEECTTGGG--G----------------------CCSH-HHHHHHHHHHHHTEEE----EEEEEE
T ss_pred             -CCCCCCHHEEEHHHHH--C----------------------CCCH-HHHHHHHHHHHHHCCC----CEEEEE
T ss_conf             -3314321001011012--0----------------------5998-8999999999986289----809999


No 109
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3
Probab=96.59  E-value=0.023  Score=33.54  Aligned_cols=156  Identities=12%  Similarity=-0.017  Sum_probs=82.4

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r  178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      +-|+. .+|.+.++-.. .  +.  ..++.+|+|-.||||.+.+...+.+    +      ...+||.|+++...+.++.
T Consensus        36 w~p~r-sklaa~i~~~~-~--l~--ikpg~~VLDlG~GtG~~~~~la~~~----~------~g~V~avD~s~~~i~~a~~   99 (210)
T 1nt2_A           36 WVPWR-SKLAAMILKGH-R--LK--LRGDERVLYLGAASGTTVSHLADIV----D------EGIIYAVEYSAKPFEKLLE   99 (210)
T ss_dssp             CCGGG-CHHHHHHHTSC-C--CC--CCSSCEEEEETCTTSHHHHHHHHHT----T------TSEEEEECCCHHHHHHHHH
T ss_pred             ECCCH-HHHHHHHHCCC-C--CC--CCCCCEEEEECCCCCHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHH
T ss_conf             78625-38999986877-6--68--8998999995688888899999743----6------9859999699999999997


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             9898088753345666682347545--79998664189998168567653100011123442266665357777477065
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS  335 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~~GdTL--~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~  335 (674)
                      ..--++..         ....++.-  ....+....+|++..+.++-.                             + .
T Consensus       100 ~a~~~~n~---------~~i~~~~~~~~~~~~~~~~v~~i~~~~~~~~-----------------------------~-~  140 (210)
T 1nt2_A          100 LVRERNNI---------IPLLFDASKPWKYSGIVEKVDLIYQDIAQKN-----------------------------Q-I  140 (210)
T ss_dssp             HHHHCSSE---------EEECSCTTCGGGTTTTCCCEEEEEECCCSTT-----------------------------H-H
T ss_pred             HHHHCCCE---------EEEEECCCCCCCCCCCCCEEEEEEEECCCHH-----------------------------H-H
T ss_conf             78648970---------7999405674112243321358872023615-----------------------------6-8


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH---HHHCCC-EEEEEECCC
Q ss_conf             999999999614665788079997389713477644326899999---988494-688831767
Q gi|254780836|r  336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW---LLENDL-IEAIVALPT  395 (674)
Q Consensus       336 ~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~---lie~d~-ieaII~LP~  395 (674)
                      -.|+.++...||+    ||++.|+....+   .+....+.++-+.   .++.++ +.-+|.|++
T Consensus       141 ~~~l~~~~~~LKp----GG~l~i~~k~~s---~d~~~~~~~~~~~~~~~l~~gf~i~e~i~L~p  197 (210)
T 1nt2_A          141 EILKANAEFFLKE----KGEVVIMVKARS---IDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMP  197 (210)
T ss_dssp             HHHHHHHHHHEEE----EEEEEEEEEHHH---HCTTSCHHHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred             HHHHHHHHHHHCC----CCEEEEEEEECC---CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9999999985158----957999998213---67888879999999999987997989985798


No 110
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransferase domain; 2.90A {Escherichia coli}
Probab=96.58  E-value=0.0084  Score=36.35  Aligned_cols=173  Identities=14%  Similarity=0.081  Sum_probs=87.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      +|.||---..+-+.|.++..        .|..+..|.|.||+.||=-+.....+    ..     ...++..|+++.-..
T Consensus        94 ~G~~yvQD~sS~l~~~~L~~--------~~~~g~~VLDlCAAPGgKT~~la~~~----~~-----~g~lvAnD~~~~R~~  156 (479)
T 2frx_A           94 SGLFYIQEASSMLPVAALFA--------DGNAPQRVMDVAAAPGSKTTQISARM----NN-----EGAILANEFSASRVK  156 (479)
T ss_dssp             TTSEEECCHHHHHHHHHHTT--------TTCCCSEEEESSCTTSHHHHHHHHHT----TT-----CSEEEEECSSHHHHH
T ss_pred             CCEEEEECHHHHHHHHHHHH--------CCCCCCEEEEECCCCCHHHHHHHHHH----CC-----CCEEEEEECCHHHHH
T ss_conf             83699988899789999752--------78999869994788658999999862----46-----825996536577788


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC---CCC
Q ss_conf             99999898088753345666682347545799986641899981685676531000111234422666653577---774
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---LPK  330 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g---lP~  330 (674)
                      +.+.||--.|+..-.       +...|...-+......||.||..+|-+-. +.    +.    ...+.++.+.   +-.
T Consensus       157 ~L~~nl~r~g~~nv~-------~~~~d~~~~~~~~~~~fD~ILvDaPCSG~-G~----~r----k~p~~~~~~s~~~~~~  220 (479)
T 2frx_A          157 VLHANISRCGISNVA-------LTHFDGRVFGAAVPEMFDAILLDAPCSGE-GV----VR----KDPDALKNWSPESNQE  220 (479)
T ss_dssp             HHHHHHHHHTCCSEE-------EECCCSTTHHHHSTTCEEEEEEECCCCCG-GG----GG----TCTTSSSSCCHHHHHH
T ss_pred             HHHHHHHHCCCCCEE-------EEECCCHHCCCCCCCCCCEEEECCCCCCC-CC----CC----CCHHHHHHCCHHHHHH
T ss_conf             999989863897189-------99354001140131016789965985678-64----04----5855776558867789


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHC--CCEEE
Q ss_conf             770659999999996146657880799973897134776443268999999884--94688
Q gi|254780836|r  331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN--DLIEA  389 (674)
Q Consensus       331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~--d~iea  389 (674)
                      -..-|.--|.|.+.-|++    ||+++-..  -++..-   -.|..| +|++++  +.++-
T Consensus       221 l~~~Q~~iL~~A~~~Lkp----GG~LvYST--CS~~~e---ENE~vV-~~~L~~~~~~~e~  271 (479)
T 2frx_A          221 IAATQRELIDSAFHALRP----GGTLVYST--CTLNQE---ENEAVC-LWLKETYPDAVEF  271 (479)
T ss_dssp             HHHHHHHHHHHHHHHEEE----EEEEEEEE--SCCSST---TTHHHH-HHHHHHSTTTEEE
T ss_pred             HHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCHH---HHHHHH-HHHHHHCCCCEEE
T ss_conf             999999999999985788----98899994--899645---329999-9999749884774


No 111
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41
Probab=96.53  E-value=0.0043  Score=38.21  Aligned_cols=97  Identities=13%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-.||||.++....    +.    +    ..+.|.|+++..-.+|+.+    +.         .++..++.-.- .
T Consensus        56 ~~VLDiGCGtG~~~~~la----~~----g----~~v~giD~S~~ml~~Ak~~----~~---------~~~~~~~~~~l-~  109 (260)
T 2avn_A           56 CRVLDLGGGTGKWSLFLQ----ER----G----FEVVLVDPSKEMLEVAREK----GV---------KNVVEAKAEDL-P  109 (260)
T ss_dssp             CEEEEETCTTCHHHHHHH----TT----T----CEEEEEESCHHHHHHHHHH----TC---------SCEEECCTTSC-C
T ss_pred             CEEEEECCCCCHHHHHHH----HC----C----CEEEEEECHHHHHHHHHHH----CC---------CCCCCCHHHHC-C
T ss_conf             989998999988899998----61----9----9899993523788999883----63---------22000157508-8


Q ss_pred             CCCCEEEEEEE-CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             86641899981-6856765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  287 FTGKRFHYCLS-NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       287 ~~~~kFD~vla-NPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      +++.+||.|++ +.-+.  |-.+                          .-.+++.+...|+|    ||.+.+-.+
T Consensus       110 ~~~~~fD~Iis~~~vl~--hi~d--------------------------~~~~l~~i~r~Lk~----gG~li~~~~  153 (260)
T 2avn_A          110 FPSGAFEAVLALGDVLS--YVEN--------------------------KDKAFSEIRRVLVP----DGLLIATVD  153 (260)
T ss_dssp             SCTTCEEEEEECSSHHH--HCSC--------------------------HHHHHHHHHHHEEE----EEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHH--CCCC--------------------------HHHHHHHHHHHCCC----CCEEEEEEC
T ss_conf             86467356550577741--6778--------------------------99999999997398----978999966


No 112
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.51  E-value=0.011  Score=35.50  Aligned_cols=164  Identities=14%  Similarity=0.054  Sum_probs=88.8

Q ss_pred             CCCCCHHHHHH-HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             75368179999-99997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  175 EDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       175 GeffTPR~Vi~-Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      |.+| ..+.+. +.+.+|          .|.++.+|.|.|||-||=-+...+.+    ..     ...++.-|+++.-..
T Consensus        98 G~~~-vQD~aS~l~~~~L----------~~~~g~~vLD~CAaPGgKt~~l~~~~----~~-----~g~i~a~d~~~~R~~  157 (315)
T 1ixk_A           98 GLIY-IQEASSMYPPVAL----------DPKPGEIVADMAAAPGGKTSYLAQLM----RN-----DGVIYAFDVDENRLR  157 (315)
T ss_dssp             TSEE-ECCHHHHHHHHHH----------CCCTTCEEEECCSSCSHHHHHHHHHT----TT-----CSEEEEECSCHHHHH
T ss_pred             CCEE-EECCHHHHHHHHC----------CCCCCCEEEECCCCCHHHHHHHHHHC----CC-----CCEEEEECCCHHHHH
T ss_conf             8689-9362121476615----------89999928895777114466533312----68-----844784107889999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CC
Q ss_conf             999998980887533456666823475457999866418999816856765--3100011123442266665357---77
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GL  328 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---gl  328 (674)
                      ..+.|+--.|...-       -+...|++.-+. ...+||.||..||=+-+  |...           ++.++..   .+
T Consensus       158 ~l~~~l~r~g~~~i-------~~~~~d~~~~~~-~~~~fD~ILlDaPCSg~G~~rr~-----------p~~~~~~~~~~~  218 (315)
T 1ixk_A          158 ETRLNLSRLGVLNV-------ILFHSSSLHIGE-LNVEFDKILLDAPCTGSGTIHKN-----------PERKWNRTMDDI  218 (315)
T ss_dssp             HHHHHHHHHTCCSE-------EEESSCGGGGGG-GCCCEEEEEEECCTTSTTTCC-------------------CCHHHH
T ss_pred             HHHHHHHHCCCCCC-------CEECCCCHHCCC-CCCCCCEEEEECCCCCCCEEECC-----------CCCCCCCCHHHH
T ss_conf             99999987187652-------111243000012-35654379861762568636024-----------450002776677


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             74770659999999996146657880799973897134776443268999999884946
Q gi|254780836|r  329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i  387 (674)
                      -.-+.-|.-.|.|.+..+++    ||+++  -.--+++.   .-+|..|++ ++++.-.
T Consensus       219 ~~l~~~Q~~iL~~a~~~lk~----gG~lv--YSTCSl~~---~ENE~vV~~-~L~~~~~  267 (315)
T 1ixk_A          219 KFCQGLQMRLLEKGLEVLKP----GGILV--YSTCSLEP---EENEFVIQW-ALDNFDV  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHEEE----EEEEE--EEESCCCG---GGTHHHHHH-HHHHSSE
T ss_pred             HHHHHHHHHHHHHHHHHCCC----CCEEE--EEEECCCH---HHHHHHHHH-HHHCCCC
T ss_conf             78999889999999996689----87898--88743862---411999999-9847997


No 113
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=96.50  E-value=0.0034  Score=38.93  Aligned_cols=30  Identities=20%  Similarity=0.517  Sum_probs=22.7

Q ss_pred             CCCCCCCCC-CCCCCCCEEEEEEECCCCCCC
Q ss_conf             823475457-999866418999816856765
Q gi|254780836|r  275 NIQQGSTLS-KDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       275 NI~~GdTL~-~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      -|.+||+|. -..+++..+|.|++-|||++.
T Consensus        16 ~l~~GD~l~~l~~L~~~sVdlIytDPPYn~~   46 (323)
T 1boo_A           16 SMYIGDSLELLESFPEESISLVMTSPPFALQ   46 (323)
T ss_dssp             EEEESCHHHHGGGSCSSCEEEEEECCCCSSS
T ss_pred             EEEECCHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf             6996628999862704897989989998577


No 114
>2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44
Probab=96.46  E-value=0.023  Score=33.54  Aligned_cols=117  Identities=20%  Similarity=0.176  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r  179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG  258 (674)
Q Consensus       179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n  258 (674)
                      |++++++.+..+           .||   +|.|..||+|..+..    +.+.    .    ..+.|.|+++...+.|+..
T Consensus        19 ~~~~~~~~~~~l-----------~pg---rVLDiGcG~G~~~~~----la~~----g----~~v~gvD~s~~~l~~a~~~   72 (199)
T 2i6g_A           19 THSDVLAAAXVV-----------APG---RTLDLGCGNGRNSLY----LAAN----G----YDVTAWDXNPASMANLERI   72 (199)
T ss_dssp             CCHHHHHHHTTS-----------CSC---EEEEETCTTSHHHHH----HHHT----T----CEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHCCC-----------CCC---CEEEECCCCCHHHHH----HHHC----C----CEEEEEECCCHHHHHHHHH
T ss_conf             389999984378-----------989---689985889789999----9854----9----9899995871899999986


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             89808875334566668234754579998664189998168567653100011123442266665357777477065999
Q gi|254780836|r  259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF  338 (674)
Q Consensus       259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lF  338 (674)
                      .--.++..-       ....+| +. +.....+||+|+++--+--                        +|+..  --.+
T Consensus        73 ~~~~~~~~~-------~~~~~d-~~-~~~~~~~fD~V~~~~~l~~------------------------~~~~~--~~~~  117 (199)
T 2i6g_A           73 XAAEGLDNL-------QTDLVD-LN-TLTFDGEYDFILSTVVMMF------------------------LEAQT--IPGL  117 (199)
T ss_dssp             HHHTTCTTE-------EEEECC-TT-TCCCCCCEEEEEEESCGGG------------------------SCTTH--HHHH
T ss_pred             HHHCCCCCH-------HHHHEE-CC-CCCCCCCEEEEEECCCHHC------------------------CCHHH--HHHH
T ss_conf             421376410-------010000-00-2466875319998121450------------------------99889--9999


Q ss_pred             HHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             9999996146657880799973
Q gi|254780836|r  339 LMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       339 lqh~i~klk~~~~~ggr~aIV~  360 (674)
                      +..+...|+|    ||++.++.
T Consensus       118 l~~~~~~L~p----gG~l~i~~  135 (199)
T 2i6g_A          118 IANMQRCTXP----GGYNLIVA  135 (199)
T ss_dssp             HHHHHHTEEE----EEEEEEEE
T ss_pred             HHHHHHHCCC----CCEEEEEE
T ss_conf             9999998387----93999999


No 115
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.45  E-value=0.0055  Score=37.54  Aligned_cols=30  Identities=17%  Similarity=0.382  Sum_probs=22.6

Q ss_pred             CCCCCCCCC-CCCCCCCEEEEEEECCCCCCC
Q ss_conf             823475457-999866418999816856765
Q gi|254780836|r  275 NIQQGSTLS-KDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       275 NI~~GdTL~-~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      .|.+||+|. -..+++..+|.|++-|||+..
T Consensus        23 ~i~~GD~le~lk~L~d~SVDLIitDPPYn~~   53 (297)
T 2zig_A           23 RLHVGDAREVLASFPEASVHLVVTSPPYWTL   53 (297)
T ss_dssp             EEEESCHHHHHTTSCTTCEEEEEECCCCCCC
T ss_pred             EEEECCHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf             7994768999962867775979989699888


No 116
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A*
Probab=96.45  E-value=0.022  Score=33.62  Aligned_cols=148  Identities=14%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      ..+++++.+++-      +  .|  +.+|.|-.||+|++-.....+.          ...++.|.|++++..++|+.++-
T Consensus       108 ~~l~~~e~~~~~------l--~~--g~rVLdiGcG~g~~t~~~~a~~----------~g~~V~gIDisp~~~~~Ar~~~~  167 (298)
T 3fpf_A          108 LELLKNEAALGR------F--RR--GERAVFIGGGPLPLTGILLSHV----------YGMRVNVVEIEPDIAELSRKVIE  167 (298)
T ss_dssp             HHHHHHHHHHTT------C--CT--TCEEEEECCCSSCHHHHHHHHT----------TCCEEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC------C--CC--CCEEEEEECCCHHHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHH
T ss_conf             999999998548------9--99--9989996068569999999856----------89989999699999999999798


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             80887533456666823475457999866418999816856765310001112344226666535777747706599999
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM  340 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlq  340 (674)
                      -.|.+.       -.+..||...-   +...||.|+..-     +      +                ++.    --.+.
T Consensus       168 ~~g~~~-------v~~~~gD~~~l---~~~~fDvV~va~-----~------v----------------~~~----~~vl~  206 (298)
T 3fpf_A          168 GLGVDG-------VNVITGDETVI---DGLEFDVLMVAA-----L------A----------------EPK----RRVFR  206 (298)
T ss_dssp             HHTCCS-------EEEEESCGGGG---GGCCCSEEEECT-----T------C----------------SCH----HHHHH
T ss_pred             HCCCCE-------EEEEECCCCCC---CCCCCCEEEECC-----C------C----------------CCH----HHHHH
T ss_conf             649950-------89997355447---899989899898-----7------7----------------379----99999


Q ss_pred             HHHHHHCCCCCCCCEEEEECCCCC--CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf             999961466578807999738971--3477644326899999988494688831767765578
Q gi|254780836|r  341 HLANKLELPPNGGGRAAIVLSSSP--LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT  401 (674)
Q Consensus       341 h~i~klk~~~~~ggr~aIV~ngs~--LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynT  401 (674)
                      |+...|+|    ||++++-..++.  ++....  .+..+      .++-...+-.|.+-..||
T Consensus       207 ~l~r~Lkp----GG~lv~r~~~glr~~l~~~v--~~~~~------~gf~~~~~~~P~~~v~ns  257 (298)
T 3fpf_A          207 NIHRYVDT----ETRIIYRTYTGMRAILYAPV--SDDDI------TGFRRAGVVLPSGKVNNT  257 (298)
T ss_dssp             HHHHHCCT----TCEEEEEECCGGGGGSSCCC--CTGGG------TTEEEEEEECCCTTCCCE
T ss_pred             HHHHHCCC----CEEEEEECCCHHHHHCCCCC--CHHHC------CCEEEEEEECCCCCCCCE
T ss_conf             99986698----97999987711787637887--75443------444678998888875315


No 117
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3}
Probab=96.43  E-value=0.049  Score=31.35  Aligned_cols=167  Identities=13%  Similarity=0.063  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      +|..++....++-.+.         .|.++.+|.|-|||-||=-+...    +....     ...++..|+++.-....+
T Consensus       240 ~~~vQD~aS~l~~~~L---------~~~~g~~VLD~CAaPGGKT~~la----~~~~~-----~~~i~a~d~~~~rl~~l~  301 (450)
T 2yxl_A          240 KIIVQEEASAVASIVL---------DPKPGETVVDLAAAPGGKTTHLA----ELMKN-----KGKIYAFDVDKMRMKRLK  301 (450)
T ss_dssp             SEEECCHHHHHHHHHH---------CCCTTCEEEESSCTTCHHHHHHH----HHTTT-----CSEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHH---------CCCCCCEEEEECCCCCHHHHHHH----HHHHH-----CCCEEECCCCHHHHHHHH
T ss_conf             4899643206689873---------45789858750688657999999----98651-----385031125487787789


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CCCC
Q ss_conf             998980887533456666823475457999-866418999816856765--3100011123442266665357---7774
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GLPK  330 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~-~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---glP~  330 (674)
                      -||--.|....       .+...|....+. ....+||.||..+|=+-.  |...           ++.||..   .+..
T Consensus       302 ~~l~r~g~~~v-------~~~~~d~~~~~~~~~~~~fD~ILvDaPCSg~G~lrr~-----------P~~~~~~~~~~~~~  363 (450)
T 2yxl_A          302 DFVKRMGIKIV-------KPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKN-----------PELRWRLREDKINE  363 (450)
T ss_dssp             HHHHHTTCCSE-------EEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTS-----------TTHHHHCCTTSHHH
T ss_pred             HHHHHHCCCCE-------EEEECCCHHCCCCCCCCCCCEEEECCCCCCCCCCCCC-----------HHHHHCCCHHHHHH
T ss_conf             99997087631-------6761330106432355657669851888899824458-----------26764378889999


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             7706599999999961466578807999738971347764432689999998849468
Q gi|254780836|r  331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE  388 (674)
Q Consensus       331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie  388 (674)
                      -..=|.--|.|....+++    ||+++-..  -+++.-   -+|..|++.|=++.-++
T Consensus       364 l~~lQ~~iL~~a~~~lkp----gG~lVYsT--CSi~~e---ENe~vV~~fL~~~~~~~  412 (450)
T 2yxl_A          364 MSQLQRELLESAARLVKP----GGRLLYTT--CSIFKE---ENEKNIRWFLNVHPEFK  412 (450)
T ss_dssp             HHHHHHHHHHHHHTTEEE----EEEEEEEE--SCCCGG---GTHHHHHHHHHHCSSCE
T ss_pred             HHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCHH---HHHHHHHHHHHHCCCCE
T ss_conf             999999999999986388----98899997--999967---77999999998699948


No 118
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=96.43  E-value=0.023  Score=33.49  Aligned_cols=149  Identities=10%  Similarity=0.058  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999998622766575368179999-9999731784011013877640311766540468999999999853100533
Q gi|254780836|r  159 YEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP  237 (674)
Q Consensus       159 yE~LIrkFae~~~~~aGeffTPR~Vi~-Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~  237 (674)
                      |..--+.|...    .+++.+-++.++ .+..++ .    .+.. ......|+|-.||||.+...-.+.+....+.    
T Consensus        15 Y~~~f~~~~~~----s~~~~~~~~~~~~~l~~~l-~----~~~~-~~~~~~VLdiGcG~G~~~~~il~~l~~~~~~----   80 (292)
T 2aot_A           15 YVESFRRFLNH----STEHQCMQEFMDKKLPGII-G----RIGD-TKSEIKILSIGGGAGEIDLQILSKVQAQYPG----   80 (292)
T ss_dssp             HHHHHHHHHTT----BSHHHHHHHHHHHTHHHHS-S----STTT-TCSEEEEEEETCTTSHHHHHHHHHHHHHSTT----
T ss_pred             HHHHHHHHHHC----CCHHHHHHHHHHHHHHHHH-H----HHCC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCC----
T ss_conf             99999999860----4057999999999999999-9----8516-7999869998797997789999988874478----


Q ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCC-----CCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             3225504666678899999998980887533456666823----475-----4579998664189998168567653100
Q gi|254780836|r  238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ----QGS-----TLSKDLFTGKRFHYCLSNPPFGKKWEKD  308 (674)
Q Consensus       238 ~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~----~Gd-----TL~~d~~~~~kFD~vlaNPPFg~~Wk~~  308 (674)
                      ..+.+.|.|+++...+.|+..+--...        ..|+.    .++     ......+...+||+|++.=-+.  |   
T Consensus        81 ~~~~~~~vD~s~~~l~~ak~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~--~---  147 (292)
T 2aot_A           81 VCINNEVVEPSAEQIAKYKELVAKTSN--------LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLY--Y---  147 (292)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHTCSS--------CTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGG--G---
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHC--------CCCCEEEECCCCHHHCCCHHHCCCCCCCEEEEEECCHHH--H---
T ss_conf             777599998988999999999887413--------355301102351654044221556789867999768044--3---


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             01112344226666535777747706599999999961466578807999738
Q gi|254780836|r  309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       309 ~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                                         +|   |- -.+|+++...|+|    ||.+.|+.+
T Consensus       148 -------------------~~---d~-~~~l~~~~~~Lkp----gG~l~i~~~  173 (292)
T 2aot_A          148 -------------------VK---DI-PATLKFFHSLLGT----NAKMLIIVV  173 (292)
T ss_dssp             -------------------CS---CH-HHHHHHHHHTEEE----EEEEEEEEE
T ss_pred             -------------------HH---HH-HHHHHHHHHHCCC----CCEEEEEEE
T ss_conf             -------------------10---39-9999999997087----969999998


No 119
>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31
Probab=96.37  E-value=0.0058  Score=37.39  Aligned_cols=94  Identities=13%  Similarity=0.032  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r  179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG  258 (674)
Q Consensus       179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n  258 (674)
                      |....+..|++.+          ......+|+|..||+|++++.+....       +   ...++|.|+++....+|+.+
T Consensus       139 ~~~~~~~~i~~~~----------~l~~~~~~~DiG~G~G~~~~~~a~~~-------~---~~~~~Giei~~~~~~~A~~~  198 (416)
T 1nw3_A          139 TSFDLVAQMIDEI----------KMTDDDLFVDLGSGVGQVVLQVAAAT-------N---CKHHYGVEKADIPAKYAETM  198 (416)
T ss_dssp             CCHHHHHHHHHHS----------CCCTTCEEEEETCTTSHHHHHHHHHC-------C---CSEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----------CCCCCCEEEECCCCCCHHHHHHHHHC-------C---CCEEEEEECCHHHHHHHHHH
T ss_conf             4099999999970----------89999889966888888999999976-------9---98899997999999999999


Q ss_pred             H-------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEEC
Q ss_conf             8-------980887533456666823475457999866--418999816
Q gi|254780836|r  259 M-------LIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSN  298 (674)
Q Consensus       259 M-------li~g~~~d~~~~~~~NI~~GdTL~~d~~~~--~kFD~vlaN  298 (674)
                      .       -..|....     .-.+..||-+..+ +..  ...|+|+.|
T Consensus       199 ~~~~~~~~~~~g~~~~-----~v~~~~gD~~~~~-~~~~~~~adVv~~n  241 (416)
T 1nw3_A          199 DREFRKWMKWYGKKHA-----EYTLERGDFLSEE-WRERIANTSVIFVN  241 (416)
T ss_dssp             HHHHHHHHHHHTCCCC-----CEEEEECCTTSHH-HHHHHHHCSEEEEC
T ss_pred             HHHHHHHHHHHCCCCC-----CEEEEECCCCCCC-CCCCCCCCEEEEEC
T ss_conf             9999887776267777-----4599976656774-10026798599998


No 120
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A*
Probab=96.36  E-value=0.053  Score=31.12  Aligned_cols=78  Identities=18%  Similarity=0.028  Sum_probs=46.6

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL  282 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL  282 (674)
                      ..++.+|+|-.||.||+...+.+.       .+    ..+-|..++++-.+.|+....=.|....      -.+..+|. 
T Consensus        70 l~~g~rVLDiGCGwG~~a~~~a~~-------~g----~~v~gitlS~~Q~~~a~~~~~~~gl~~~------v~~~~~d~-  131 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAE-------YD----VNVIGLTLSENQYAHDKAMFDEVDSPRR------KEVRIQGW-  131 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHH-------HC----CEEEEEECCHHHHHHHHHHHHHSCCSSC------EEEEECCG-
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHH-------CC----CEEEEEECCHHHHHHHHHHHHHHHCCHH------HHHHHCCC-
T ss_conf             999898988578853999999998-------69----8389983778899999999987400212------33444043-


Q ss_pred             CCCCCCCCEEEEEEECCCC
Q ss_conf             7999866418999816856
Q gi|254780836|r  283 SKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       283 ~~d~~~~~kFD~vlaNPPF  301 (674)
                         .+.+.+||.|+|-=-|
T Consensus       132 ---~~~~~~fD~ivSie~~  147 (302)
T 3hem_A          132 ---EEFDEPVDRIVSLGAF  147 (302)
T ss_dssp             ---GGCCCCCSEEEEESCG
T ss_pred             ---CCCCCCCCEEEEEHHH
T ss_conf             ---2347886755311568


No 121
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=96.34  E-value=0.055  Score=31.03  Aligned_cols=123  Identities=15%  Similarity=0.050  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r  179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG  258 (674)
Q Consensus       179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n  258 (674)
                      -|+ =++|.+.|+- ..+ .+  ...++.+|+|-.||||.+.+...+.+.         ....+||.|+++...+.++..
T Consensus        56 ~p~-rsklaaai~~-~l~-~l--~lkpG~~VLDlG~G~G~~~~~la~~vg---------~~G~V~aVD~s~~~l~~a~~~  121 (233)
T 2ipx_A           56 NPF-RSKLAAAILG-GVD-QI--HIKPGAKVLYLGAASGTTVSHVSDIVG---------PDGLVYAVEFSHRSGRDLINL  121 (233)
T ss_dssp             CTT-TCHHHHHHHT-TCS-CC--CCCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEECCCHHHHHHHHHH
T ss_pred             CCC-CCHHHHHHHH-CHH-HC--CCCCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHH
T ss_conf             786-1299999984-555-25--999999999965768989999999859---------996799997999999999997


Q ss_pred             HHHHCCCCCCCCCCCCCCC--CCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             8980887533456666823--47545--7999866418999816856765310001112344226666535777747706
Q gi|254780836|r  259 MLIRRLESDPRRDLSKNIQ--QGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG  334 (674)
Q Consensus       259 Mli~g~~~d~~~~~~~NI~--~GdTL--~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg  334 (674)
                      .--+           .||.  .+|.-  ....+....||+++++.+.--                             + 
T Consensus       122 a~~~-----------~ni~~i~~d~~~~~~~~~~~~~vd~i~~~~~~~~-----------------------------~-  160 (233)
T 2ipx_A          122 AKKR-----------TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPD-----------------------------Q-  160 (233)
T ss_dssp             HHHC-----------TTEEEECSCTTCGGGGGGGCCCEEEEEECCCCTT-----------------------------H-
T ss_pred             HHHC-----------CCCCEEEEECCCCHHCCCCCCEEEEEECCCCCCH-----------------------------H-
T ss_conf             5514-----------6664289753670111566526888531422651-----------------------------5-


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             59999999996146657880799973
Q gi|254780836|r  335 SMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       335 ~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      .-.++.++...||+    ||+..|+.
T Consensus       161 ~~~~l~~~~r~LKp----GG~lvi~~  182 (233)
T 2ipx_A          161 TRIVALNAHTFLRN----GGHFVISI  182 (233)
T ss_dssp             HHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             HHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             99999999985689----86799998


No 122
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.31  E-value=0.0082  Score=36.41  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL  282 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL  282 (674)
                      +.++.+|+|-.||||.++....    +.    .    ..+.|.|+++...+.|+-++  ..          -++..||..
T Consensus        55 ~~~g~~VLDiGcG~G~~~~~la----~~----~----~~v~giD~s~~ml~~a~~~~--~~----------~~~~~~~~~  110 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIA----QS----G----AEVLGTDNAATMIEKARQNY--PH----------LHFDVADAR  110 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHH----HT----T----CEEEEEESCHHHHHHHHHHC--TT----------SCEEECCTT
T ss_pred             CCCCCEEEEECCCCCHHHHHHH----HC----C----CEEEEEECHHHHHHHHHHHC--CC----------CCEEEHHHC
T ss_conf             9996999993585859999999----64----9----98999916388999998616--54----------311100000


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             79998664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r  283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                      .-+  .+..||+|+++--+.  |-.+.                          -.++..+...|+|    ||++++..++
T Consensus       111 ~~~--~~~~fD~v~~~~~l~--~~~d~--------------------------~~~l~~~~~~lkp----gG~~~~~~~~  156 (279)
T 3ccf_A          111 NFR--VDKPLDAVFSNAMLH--WVKEP--------------------------EAAIASIHQALKS----GGRFVAEFGG  156 (279)
T ss_dssp             TCC--CSSCEEEEEEESCGG--GCSCH--------------------------HHHHHHHHHHEEE----EEEEEEEEEC
T ss_pred             CCC--CCCCCCEEEEEECCC--CCCCH--------------------------HHHHHHHHHHCCC----CCEEEEEECC
T ss_conf             135--676553897752014--56788--------------------------9999999997189----9689999789


No 123
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=96.24  E-value=0.008  Score=36.46  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-.||+|.+...       ..+      ...++|.++++..-.+|+.+.-..|...        ....+|.+..+ 
T Consensus       107 ~~VLDlGCG~G~l~~~-------~~~------~~~v~gvD~s~~~l~~ar~~~~~~~~~~--------~~~~~d~~~~~-  164 (253)
T 3frh_A          107 RRVLDIACGLNPLALY-------ERG------IASVWGCDIHQGLGDVITPFAREKDWDF--------TFALQDVLCAP-  164 (253)
T ss_dssp             SEEEEETCTTTHHHHH-------HTT------CSEEEEEESBHHHHHHHHHHHHHTTCEE--------EEEECCTTTSC-
T ss_pred             CEEEEECCCCCHHHHH-------HCC------CCEEEEEECCHHHHHHHHHHHHHCCCCC--------EEEECCHHHCC-
T ss_conf             8599967888899999-------768------9838999797999999999999829970--------48855622245-


Q ss_pred             CCCCEEEEEEECC
Q ss_conf             8664189998168
Q gi|254780836|r  287 FTGKRFHYCLSNP  299 (674)
Q Consensus       287 ~~~~kFD~vlaNP  299 (674)
                       ....||+|++.-
T Consensus       165 -~~~~~D~v~~~~  176 (253)
T 3frh_A          165 -PAEAGDLALIFK  176 (253)
T ss_dssp             -CCCBCSEEEEES
T ss_pred             -CCCCCCHHHHHC
T ss_conf             -776744105424


No 124
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.23  E-value=0.027  Score=33.08  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=59.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|..||+|.++....    +.+        ..++|.|+++...++|+.++  .+.          +...++.. ...
T Consensus        48 ~~vLDlGCG~G~~~~~l~----~~~--------~~v~giD~s~~~i~~a~~~~--~~~----------~~~~~~~~-~~~  102 (195)
T 3cgg_A           48 AKILDAGCGQGRIGGYLS----KQG--------HDVLGTDLDPILIDYAKQDF--PEA----------RWVVGDLS-VDQ  102 (195)
T ss_dssp             CEEEEETCTTTHHHHHHH----HTT--------CEEEEEESCHHHHHHHHHHC--TTS----------EEEECCTT-TSC
T ss_pred             CEEEEECCCCCHHHHHHH----HCC--------CEEEEEECCHHHHHHHHHHC--CCC----------CEEECCCC-CCC
T ss_conf             989997688859999999----769--------98999979727789999730--254----------31102433-565


Q ss_pred             CCCCEEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             8664189998168-5676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  287 FTGKRFHYCLSNP-PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       287 ~~~~kFD~vlaNP-PFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      +++..||.|+++= .+..        +..+                  ..-.+|..+...|||    ||++.+.+
T Consensus       103 ~~~~~fD~v~~~~~~~~~--------~~~~------------------~~~~~l~~~~r~Lkp----GG~~v~~~  147 (195)
T 3cgg_A          103 ISETDFDLIVSAGNVMGF--------LAED------------------GREPALANIHRALGA----DGRAVIGF  147 (195)
T ss_dssp             CCCCCEEEEEECCCCGGG--------SCHH------------------HHHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CCCCCCCEEEECCHHHHC--------CCHH------------------HHHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             666532589982303444--------8857------------------899999999998786----85899998


No 125
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8}
Probab=96.18  E-value=0.011  Score=35.59  Aligned_cols=96  Identities=20%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      +.+|+|-.||+|.++.       .+ +      ...++|.|+++....+|+.++    .+.        ....+|. .+-
T Consensus        37 g~~iLDiGCG~G~~~~-------~l-~------~~~v~g~D~s~~~l~~A~~~~----~~~--------~~~~~~~-~~l   89 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLR-------RL-P------YPQKVGVEPSEAMLAVGRRRA----PEA--------TWVRAWG-EAL   89 (211)
T ss_dssp             CSEEEEETCTTCHHHH-------HC-C------CSEEEEECCCHHHHHHHHHHC----TTS--------EEECCCT-TSC
T ss_pred             CCEEEEECCCCHHHHH-------HC-C------CCCEEEEECCHHHHHHHHHCC----CCC--------EEEECCH-HCC
T ss_conf             9989998998609999-------73-7------686899838999999876336----652--------0343423-117


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             986641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      .+++..||.|+++=-+  .|-                      |   |- -.+|..+...|||    ||++.+..
T Consensus        90 ~~~~~~fD~V~~~~~l--~h~----------------------~---d~-~~~l~~i~r~LkP----gG~l~l~~  132 (211)
T 2gs9_A           90 PFPGESFDVVLLFTTL--EFV----------------------E---DV-ERVLLEARRVLRP----GGALVVGV  132 (211)
T ss_dssp             CSCSSCEEEEEEESCT--TTC----------------------S---CH-HHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHH--HHC----------------------C---CH-HHHHHHHHHHCCC----CCEEEEEE
T ss_conf             8875642279875478--724----------------------8---99-9999999998388----92899997


No 126
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=96.18  E-value=0.066  Score=30.48  Aligned_cols=123  Identities=13%  Similarity=0.051  Sum_probs=67.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-.||+|.++..    +.+.    +    ..+.|.|+++..-.+|+...-....             ..+-..-| 
T Consensus        45 ~~VLDvGCG~G~~~~~----l~~~----g----~~v~gvD~s~~~i~~a~~~~~~~~~-------------~~~~~~~~-   98 (211)
T 3e23_A           45 AKILELGCGAGYQAEA----MLAA----G----FDVDATDGSPELAAEASRRLGRPVR-------------TMLFHQLD-   98 (211)
T ss_dssp             CEEEESSCTTSHHHHH----HHHT----T----CEEEEEESCHHHHHHHHHHHTSCCE-------------ECCGGGCC-
T ss_pred             CEEEEECCCCCHHHHH----HHHC----C----CCEEEEECCHHHHHHHHHHCCCCCE-------------EEEEECCC-
T ss_conf             9899986888699999----9975----9----9232341469999999986088620-------------11220255-


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCC
Q ss_conf             866418999816856765310001112344226666535777747706599999999961466578807999738-9713
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPL  365 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n-gs~L  365 (674)
                       ....||+|+++==+  .|                      +|+. + ...+++++...|+|    ||++.+-.. +...
T Consensus        99 -~~~~fD~I~~~~~l--~~----------------------l~~~-~-~~~~~~~~~~~Lkp----GG~l~~~~~~~~~~  147 (211)
T 3e23_A           99 -AIDAYDAVWAHACL--LH----------------------VPRD-E-LADVLKLIWRALKP----GGLFYASYKSGEGE  147 (211)
T ss_dssp             -CCSCEEEEEECSCG--GG----------------------SCHH-H-HHHHHHHHHHHEEE----EEEEEEEEECCSSC
T ss_pred             -CCCCCCHHHHHHHH--HC----------------------CCHH-H-HHHHHHHHHHHCCC----CCEEEEEEECCCCC
T ss_conf             -32233136544346--51----------------------8978-9-99999999997396----82899997658776


Q ss_pred             -CC--CC--CCCCHHHHHHHHHHCCC
Q ss_conf             -47--76--44326899999988494
Q gi|254780836|r  366 -FN--GR--AGSGESEIRRWLLENDL  386 (674)
Q Consensus       366 -F~--G~--agsGEs~IRk~lie~d~  386 (674)
                       ..  |.  ..-.+..+++.+-+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~l~~~l~~~g~  173 (211)
T 3e23_A          148 GRDKLARYYNYPSEEWLRARYAEAGT  173 (211)
T ss_dssp             EECTTSCEECCCCHHHHHHHHHHHCC
T ss_pred             CCCCCCCEECCCCHHHHHHHHHHCCC
T ss_conf             65567873067999999999997799


No 127
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=96.15  E-value=0.0085  Score=36.31  Aligned_cols=94  Identities=13%  Similarity=0.115  Sum_probs=58.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-.||||.++..    +.+.        ...++|.|+++.....++.+.  ..           .+...+.   ..
T Consensus        19 ~~VLDiGcG~G~~~~~----l~~~--------~~~v~gvD~s~~~i~~a~~~~--~~-----------~~~~~~~---~~   70 (170)
T 3i9f_A           19 GVIVDYGCGNGFYCKY----LLEF--------ATKLYCIDINVIALKEVKEKF--DS-----------VITLSDP---KE   70 (170)
T ss_dssp             EEEEEETCTTCTTHHH----HHTT--------EEEEEEECSCHHHHHHHHHHC--TT-----------SEEESSG---GG
T ss_pred             CEEEEEECCCCHHHHH----HHHC--------CCEEEEEECCCCCCCEECCCC--EE-----------EEEEECC---CC
T ss_conf             9799980899799999----9962--------998999945642010001221--03-----------5532001---23


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      +++..||+|+++--+-  |-.+                          ...+++.+...|+|    ||+++|+.
T Consensus        71 l~~~~fD~i~~~~~l~--~~~~--------------------------~~~~l~~i~r~Lkp----gG~l~i~~  112 (170)
T 3i9f_A           71 IPDNSVDFILFANSFH--DMDD--------------------------KQHVISEVKRILKD----DGRVIIID  112 (170)
T ss_dssp             SCTTCEEEEEEESCST--TCSC--------------------------HHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CCCCCEEEEEEEEEEE--CCCC--------------------------HHHHHHHHHHHCCC----CEEEEEEE
T ss_conf             7878578999850334--1779--------------------------99999999997587----80999999


No 128
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=96.14  E-value=0.014  Score=34.98  Aligned_cols=103  Identities=15%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r  170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      ..+.-||+| +-..|++-+|+.+          .+....+|.+--||+|.+ |.+   +.+   ..     ..+++.|++
T Consensus        24 pkK~lGQNFL~d~~i~~kIv~~~----------~~~~~d~VlEIGpG~G~L-T~~---Ll~---~~-----~~v~aiEiD   81 (295)
T 3gru_A           24 PKKKLGQCFLIDKNFVNKAVESA----------NLTKDDVVLEIGLGKGIL-TEE---LAK---NA-----KKVYVIEID   81 (295)
T ss_dssp             ------CCEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSHH-HHH---HHH---HS-----SEEEEEESC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHH---CC-----CCEEEEEEC
T ss_conf             88877823028999999999963----------899999599979974699-999---981---68-----966999988


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             78899999998980887533456666823475457999866418999816856765
Q gi|254780836|r  249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      +......+...--..         .-.|..+|-|.-|. +...++.|++|.||+++
T Consensus        82 ~~l~~~L~~~~~~~~---------n~~ii~~D~l~~d~-~~~~~~~vv~NLPYnIs  127 (295)
T 3gru_A           82 KSLEPYANKLKELYN---------NIEIIWGDALKVDL-NKLDFNKVVANLPYQIS  127 (295)
T ss_dssp             GGGHHHHHHHHHHCS---------SEEEEESCTTTSCG-GGSCCSEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCC---------CEEEEECCCCCCCH-HHCCCCEEEEEEHHHHC
T ss_conf             799999997676427---------73688512103771-33375537862026425


No 129
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=96.12  E-value=0.0045  Score=38.10  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=62.1

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      ...+|+|-+||||.+...    +.+...       ..+.|.|+++.....|+.+..    ...      -....+|...-
T Consensus        44 ~g~~VLDiGcG~G~~~~~----l~~~g~-------~~v~giD~S~~~i~~a~~~~~----~~~------~~~~~~d~~~l  102 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIY----AAEHGA-------KKVLGIDLSERMLTEAKRKTT----SPV------VCYEQKAIEDI  102 (253)
T ss_dssp             TTCEEEEETCTTCHHHHH----HHHTTC-------SEEEEEESCHHHHHHHHHHCC----CTT------EEEEECCGGGC
T ss_pred             CCCEEEEECCCCCHHHHH----HHHCCC-------CEEEEEECCCHHHHHHHHHHC----CCC------CCCCCCCCCCC
T ss_conf             969899983778499999----996499-------989999485065689987403----444------32222222456


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             998664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                       .+++.+||+|+++=.+.  |-.+                      .    -.++..+...|+|    ||++.+..++
T Consensus       103 -~~~~~~fD~V~~~~~l~--~~~d----------------------~----~~~l~~i~r~Lkp----gG~lv~~~~~  147 (253)
T 3g5l_A          103 -AIEPDAYNVVLSSLALH--YIAS----------------------F----DDICKKVYINLKS----SGSFIFSVEH  147 (253)
T ss_dssp             -CCCTTCEEEEEEESCGG--GCSC----------------------H----HHHHHHHHHHEEE----EEEEEEEEEC
T ss_pred             -CCCCCCCCCCCCCCEEE--ECCC----------------------H----HHHHHHHHHHCCC----CCEEEEEECC
T ss_conf             -65675555342111133--1489----------------------9----9999999997488----9489999658


No 130
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.07  E-value=0.017  Score=34.37  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCCCCCH-HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             5753681-799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFMTP-RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeffTP-R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      +|-||-+ +.....|++.+.    +.   .++  ..|+|=.||+|.|=....+       ..     ..++|.|.++.+.
T Consensus       267 p~sF~Q~N~~~~~~L~~~v~----~~---~~~--~~vlDLycG~G~fsl~LA~-------~~-----~~V~gvE~~~~av  325 (425)
T 2jjq_A          267 PNSFFQTNSYQAVNLVRKVS----EL---VEG--EKILDMYSGVGTFGIYLAK-------RG-----FNVKGFDSNEFAI  325 (425)
T ss_dssp             TTSCCCSBHHHHHHHHHHHH----HH---CCS--SEEEEETCTTTHHHHHHHH-------TT-----CEEEEEESCHHHH
T ss_pred             CCHHHHHCHHHHHHHHHHHH----CC---CCC--CEEEECCCCCCHHHHHHHH-------CC-----CEEEEEECCHHHH
T ss_conf             77043315576754212222----03---687--7787626786688899874-------28-----5545750468889


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             999999898088753345666682347545799986641899981685
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP  300 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPP  300 (674)
                      .-|+.|.-+.+++....       ..++.    ......||.|+.+||
T Consensus       326 ~~A~~na~~n~~~~~~~-------~~~~~----~~~~~~~D~vvlDPP  362 (425)
T 2jjq_A          326 EMARRNVEINNVDAEFE-------VASDR----EVSVKGFDTVIVDPP  362 (425)
T ss_dssp             HHHHHHHHHHTCCEEEE-------ECCTT----TCCCTTCSEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEE-------EHHHH----HHHHCCCCEEEECCC
T ss_conf             99999898779707986-------40113----443069999999998


No 131
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A*
Probab=96.01  E-value=0.016  Score=34.54  Aligned_cols=173  Identities=13%  Similarity=0.158  Sum_probs=93.4

Q ss_pred             CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf             76657536-81799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r  171 SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP  249 (674)
Q Consensus       171 ~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~  249 (674)
                      .+.-||+| +-..+++-+|+.+          ......+|.+--+|+|. ||.+   +.+   . .   .-.++..|+++
T Consensus         6 kk~lGQnFL~d~~~~~~iv~~~----------~~~~~d~VlEIGpG~G~-LT~~---Ll~---~-~---~~~v~aiE~D~   64 (249)
T 3ftd_A            6 KKSFGQHLLVSEGVLKKIAEEL----------NIEEGNTVVEVGGGTGN-LTKV---LLQ---H-P---LKKLYVIELDR   64 (249)
T ss_dssp             --CCCSSCEECHHHHHHHHHHT----------TCCTTCEEEEEESCHHH-HHHH---HTT---S-C---CSEEEEECCCH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCH-HHHH---HHH---H-C---CCEEEEEEECC
T ss_conf             7778845018989999999954----------89998949996998769-8999---997---0-4---57078999866


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             88999999989808875334566668234754579998664189998168567653100011123442266665357777
Q gi|254780836|r  250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP  329 (674)
Q Consensus       250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP  329 (674)
                      ..+..      ++...     ...-+|..+|-|.-|.....+...|++|.||++.=                        
T Consensus        65 ~l~~~------l~~~~-----~~~~~ii~~D~l~~~~~~~~~~~~vVgNLPY~Iss------------------------  109 (249)
T 3ftd_A           65 EMVEN------LKSIG-----DERLEVINEDASKFPFCSLGKELKVVGNLPYNVAS------------------------  109 (249)
T ss_dssp             HHHHH------HTTSC-----CTTEEEECSCTTTCCGGGSCSSEEEEEECCTTTHH------------------------
T ss_pred             CCHHH------HHHHC-----CCCEEEEECCHHHCCHHHCCCCCEEEECCCHHHHH------------------------
T ss_conf             20013------22220-----44328996340117864629762586144210417------------------------


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCC--CCCCCCCCCHHHHHHHHHH-CCCEEEEEECCCCCCCC-CCCC
Q ss_conf             4770659999999996146657880799973-8971--3477644326899999988-49468883176776557-8861
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSP--LFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFR-TNIA  404 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~--LF~G~agsGEs~IRk~lie-~d~ieaII~LP~~lFyn-TgI~  404 (674)
                             -.|.+.+.....     -+.++++ .--+  =+.|..+.|--.+   ++. -.-++-+...|.+.|+- -.+-
T Consensus       110 -------~ii~~ll~~~~~-----~~~~vlmvQkEvA~Rl~~~~~y~~lSv---~~q~~~~~~~~~~V~~~~F~P~PkVd  174 (249)
T 3ftd_A          110 -------LIIENTVYNKDC-----VPLAVFMVQKEVAEKLQGKKDTGWLSV---FVRTFYDVNYVMTVPPRFFVPPPKVQ  174 (249)
T ss_dssp             -------HHHHHHHHTGGG-----CSEEEEEEEHHHHHHHHTSSCCCHHHH---HHHHHEEEEEEEEECGGGEESCCSSC
T ss_pred             -------HHHHHHHHCCCC-----CCEEEEEEEHHHHHHHCCCCCCCHHHH---HHHHHHHEEECCCCCHHHCCCCCCCC
T ss_conf             -------999998731455-----300577675999987317889873469---99866431001456655468999623


Q ss_pred             EEEEEEECCC
Q ss_conf             6999994688
Q gi|254780836|r  405 TYLWILSNRK  414 (674)
Q Consensus       405 t~Iwil~k~K  414 (674)
                      .+|.-|..++
T Consensus       175 S~vv~l~~~~  184 (249)
T 3ftd_A          175 SAVIKLVKNE  184 (249)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEECC
T ss_conf             5889987579


No 132
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=95.97  E-value=0.049  Score=31.36  Aligned_cols=99  Identities=10%  Similarity=0.011  Sum_probs=64.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      .|++-+...++-.|.+++          ...+..+|+|-.||||-+-....+.+       +    ..+++.|++++...
T Consensus        70 ~~~~is~P~~~A~ml~~L----------~l~~g~~VLeIGsGtGy~ta~la~l~-------g----~~V~~IE~~~~l~~  128 (235)
T 1jg1_A           70 AGQTVSAPHMVAIMLEIA----------NLKPGMNILEVGTGSGWNAALISEIV-------K----TDVYTIERIPELVE  128 (235)
T ss_dssp             TTCEECCHHHHHHHHHHH----------TCCTTCCEEEECCTTSHHHHHHHHHH-------C----SCEEEEESCHHHHH
T ss_pred             CCCEECHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHHC-------C----CEEEEEEECHHHHH
T ss_conf             998976689999999970----------48999879994788767899999864-------9----73999962889999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             999998980887533456666823475457999866418999816856
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      .|+.|+--.|...       -.+..||-.. .......||.|+.+.-.
T Consensus       129 ~a~~~l~~~g~~n-------v~~~~gd~~~-g~~~~~~fD~I~v~~a~  168 (235)
T 1jg1_A          129 FAKRNLERAGVKN-------VHVILGDGSK-GFPPKAPYDVIIVTAGA  168 (235)
T ss_dssp             HHHHHHHHTTCCS-------EEEEESCGGG-CCGGGCCEEEEEECSBB
T ss_pred             HHHHHHHHCCCCE-------EEEEECCCCC-CCCCCCCCCEEEEECCH
T ss_conf             9999999809971-------6999887001-66655763436761465


No 133
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=95.94  E-value=0.028  Score=32.92  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=72.9

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             3117665404689999999998531005333225504666678899999998980887533456666823475457-999
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDL  286 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~-~d~  286 (674)
                      .|.|-.||+|.+++..+.    .++      ...+.|.|+.+...+.|.....-.|+..-       .+..||... .+.
T Consensus        44 ~iLEIGcG~G~~~~~lA~----~~P------~~~~igiD~~~~~v~~a~~~~~~~~l~Nv-------~~~~~da~~l~~~  106 (214)
T 1yzh_A           44 IHVEVGSGKGAFVSGMAK----QNP------DINYIGIDIQKSVLSYALDKVLEVGVPNI-------KLLWVDGSDLTDY  106 (214)
T ss_dssp             EEEEESCTTSHHHHHHHH----HCT------TSEEEEEESCHHHHHHHHHHHHHHCCSSE-------EEEECCSSCGGGT
T ss_pred             CEEEEEEECCHHHHHHHH----HCC------CCCEEEEECCHHHHHHHHHHHHHHCCCCE-------EEEECCHHHHHHH
T ss_conf             189994108699999999----789------99779740778889999999998399864-------4552369887421


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973897134
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF  366 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF  366 (674)
                      ++...+|.|..|.|-  +|-+.+     .++    .|.-         +-.||..+...|++    ||.+-+....-.+|
T Consensus       107 ~~~~~~d~v~~~fPd--PwpK~r-----h~k----rRli---------~~~fl~~~~r~Lkp----gG~l~i~TD~~~y~  162 (214)
T 1yzh_A          107 FEDGEIDRLYLNFSD--PWPKKR-----HEK----RRLT---------YKTFLDTFKRILPE----NGEIHFKTDNRGLF  162 (214)
T ss_dssp             SCTTCCSEEEEESCC--CCCSGG-----GGG----GSTT---------SHHHHHHHHHHSCT----TCEEEEEESCHHHH
T ss_pred             CCCCEEEEEECCCCC--CCCHHH-----HHH----HHHC---------CHHHHHHHHHHCCC----CCEEEEEECCHHHH
T ss_conf             257743111124678--662011-----131----5531---------07899999997488----98899996898999


No 134
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=95.93  E-value=0.00081  Score=42.97  Aligned_cols=85  Identities=16%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf             4031176654046899999999985310053332255046666788999999989808875334566668--23475457
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLS  283 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N--I~~GdTL~  283 (674)
                      ..+|+|.|||+|+.=..+..    .    +    ..+.|.|.+|-.|+|+.-.+-.-..+.... ....+  +..||++.
T Consensus        84 ~~~VLD~taGlG~Da~~lA~----~----G----~~V~~vE~sp~~~~Ll~~~l~~a~~~~~~~-~~~~ri~~~~gDa~~  150 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLAS----L----G----LTVTAFEQHPAVACLLSDGIRRALLNPETQ-DTAARINLHFGNAAE  150 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHH----T----T----CCEEEEECCHHHHHHHHHHHHHHHHSHHHH-HHHTTEEEEESCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHH----C----C----CEEEEEECCHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHCCHHH
T ss_conf             98199907873599999997----6----9----989999688899999999999999696876-788755710075999


Q ss_pred             C-C--CCCCCEEEEEEECCCCCC
Q ss_conf             9-9--986641899981685676
Q gi|254780836|r  284 K-D--LFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       284 ~-d--~~~~~kFD~vlaNPPFg~  303 (674)
                      - .  ...+.+||+|..+|||-.
T Consensus       151 ~l~~l~~~~~~~DvIylDPMf~~  173 (258)
T 2r6z_A          151 QMPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHHCCCSEEEECCCC--
T ss_pred             HHHHHHHCCCCCCEEEECCCCCC
T ss_conf             99999963899888998899975


No 135
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.90  E-value=0.015  Score=34.76  Aligned_cols=182  Identities=14%  Similarity=0.118  Sum_probs=97.7

Q ss_pred             HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999862276657536-8179999999973178401101387764031176654046899999999985310053332
Q gi|254780836|r  161 HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI  239 (674)
Q Consensus       161 ~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~  239 (674)
                      .+++++.--..+.-|||| .-+.|++-+++.+-.          .. .+|.+--+|+|.+ |.+   +.+..        
T Consensus        12 ~~l~~~~~~~kK~lGQnFL~d~~i~~~iv~~~~~----------~~-~~VlEIGpG~G~L-T~~---L~~~~--------   68 (271)
T 3fut_A           12 ALLERHGLFADKRFGQNFLVSEAHLRRIVEAARP----------FT-GPVFEVGPGLGAL-TRA---LLEAG--------   68 (271)
T ss_dssp             HHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCC----------CC-SCEEEECCTTSHH-HHH---HHHTT--------
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----------CC-CCEEEECCCCCHH-HHH---HHHCC--------
T ss_conf             9999769998877784503898999999996589----------99-9889967977199-999---99608--------


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             25504666678899999998980887533456666823475457999866418999816856765310001112344226
Q gi|254780836|r  240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG  319 (674)
Q Consensus       240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~  319 (674)
                      -.++..|+.+..+..-+...  .+..        ..+..++-+..+.....+...|++|.||+++=              
T Consensus        69 ~~v~avE~D~~l~~~L~~~~--~~~~--------~~~i~~~~~~~~~~~~~~~~~vv~NLPY~Ist--------------  124 (271)
T 3fut_A           69 AEVTAIEKDLRLRPVLEETL--SGLP--------VRLVFQDALLYPWEEVPQGSLLVANLPYHIAT--------------  124 (271)
T ss_dssp             CCEEEEESCGGGHHHHHHHT--TTSS--------EEEEESCGGGSCGGGSCTTEEEEEEECSSCCH--------------
T ss_pred             CCEEEEEECHHHHHHHHHHH--HHCC--------HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH--------------
T ss_conf             96799983706788887543--3301--------03334655531033077642672365213267--------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCC--CCCCCCCCCH----HHHHHHHHHCCCEEEEEE
Q ss_conf             66653577774770659999999996146657880799973-8971--3477644326----899999988494688831
Q gi|254780836|r  320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSP--LFNGRAGSGE----SEIRRWLLENDLIEAIVA  392 (674)
Q Consensus       320 ~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~--LF~G~agsGE----s~IRk~lie~d~ieaII~  392 (674)
                                       -++.+.++....     .+ +|+| .--+  =+.+..|+..    |-+-++   -.-++-+..
T Consensus       125 -----------------~ii~~ll~~~~~-----~~-~vlm~QkEvA~Ri~a~~~~k~y~~lSv~~q~---~~~~~~~~~  178 (271)
T 3fut_A          125 -----------------PLVTRLLKTGRF-----AR-LVFLVQKEVAERMTARPKTPAYGVLTLRVAH---HAVAERLFD  178 (271)
T ss_dssp             -----------------HHHHHHHHHCCE-----EE-EEEEEEHHHHHHHTCCTTSTTCSHHHHHHHH---HEEEEEEEE
T ss_pred             -----------------HHHHHHCCCCCC-----CC-CEEEEHHHHHHHHHCCCCCCCCCCCHHHHHH---HHHCCCCCC
T ss_conf             -----------------999860345655-----44-1343108999998637997565824677666---340354654


Q ss_pred             CCCCCCCC-CCCCEEEEEEECCCC
Q ss_conf             76776557-886169999946887
Q gi|254780836|r  393 LPTDLFFR-TNIATYLWILSNRKT  415 (674)
Q Consensus       393 LP~~lFyn-TgI~t~Iwil~k~K~  415 (674)
                      .|.+-||- -.+-..|+-+..+++
T Consensus       179 V~~~~F~P~PkVdS~vv~l~~k~~  202 (271)
T 3fut_A          179 LPPGAFFPPPKVWSSLVRLTPTGA  202 (271)
T ss_dssp             ECGGGEESCCSSCEEEEEEEECSC
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCC
T ss_conf             588789999953688885325665


No 136
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A*
Probab=95.90  E-value=0.084  Score=29.82  Aligned_cols=174  Identities=16%  Similarity=0.029  Sum_probs=80.5

Q ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC----------C
Q ss_conf             877640311766540468999999999853100533322550466667889999999898088753345----------6
Q gi|254780836|r  202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR----------D  271 (674)
Q Consensus       202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~----------~  271 (674)
                      .+-++.+|.|-.||||.+...+       ...    ....++|.++++.....|+.+.--.+...+...          .
T Consensus        53 ~~~~g~~vLDlGCG~G~~~~~l-------~~~----~~~~V~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLS-------ACE----SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN  121 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTT-------GGG----TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCCCHHHHHH-------HHH----CCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             8888988999678776769999-------972----19989995699999999999987547762213257788752144


Q ss_pred             C-------------CCCCCCCCCCCC---CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             6-------------668234754579---998664189998168567653100011123442266665357777477065
Q gi|254780836|r  272 L-------------SKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS  335 (674)
Q Consensus       272 ~-------------~~NI~~GdTL~~---d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~  335 (674)
                      .             .......+.+..   ......+||.|+++=-.  .|-.                     +...+ -
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~fD~i~~~~~l--~~~~---------------------~~~~~-~  177 (265)
T 2i62_A          122 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCL--DAAC---------------------PDLPA-Y  177 (265)
T ss_dssp             CSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH--HHHC---------------------SSHHH-H
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCE--EECC---------------------CCHHH-H
T ss_conf             0156777777777764320210004443455567864799853722--3057---------------------65888-9


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCCCC-----CCHHHHHHHHHHCCCE-EE--EEECCCCCCCCCCCCE
Q ss_conf             999999999614665788079997--389713477644-----3268999999884946-88--8317677655788616
Q gi|254780836|r  336 MLFLMHLANKLELPPNGGGRAAIV--LSSSPLFNGRAG-----SGESEIRRWLLENDLI-EA--IVALPTDLFFRTNIAT  405 (674)
Q Consensus       336 ~lFlqh~i~klk~~~~~ggr~aIV--~ngs~LF~G~ag-----sGEs~IRk~lie~d~i-ea--II~LP~~lFynTgI~t  405 (674)
                      ..++.++...|||    ||+....  .+.+-...|+.-     =.+..||..|-+.++. +.  ++..+......-.  +
T Consensus       178 ~~~~~~~~~~Lkp----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~aGf~v~~~~~~~~~~~~~~~~~--~  251 (265)
T 2i62_A          178 RTALRNLGSLLKP----GGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNN--E  251 (265)
T ss_dssp             HHHHHHHHTTEEE----EEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCC--C
T ss_pred             HHHHHHHHHHCCC----CEEEEEEEECCCCCCEECCEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--C
T ss_conf             9999999985488----809999998578854346555267387999999999987998999998347720222688--6


Q ss_pred             EEEEEECCCCC
Q ss_conf             99999468874
Q gi|254780836|r  406 YLWILSNRKTE  416 (674)
Q Consensus       406 ~Iwil~k~K~~  416 (674)
                      .+.++.-+||.
T Consensus       252 ~~~~lvArKp~  262 (265)
T 2i62_A          252 GLFSLVGRKPG  262 (265)
T ss_dssp             CEEEEEEECCC
T ss_pred             EEEEEEEECCC
T ss_conf             28999997878


No 137
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099}
Probab=95.84  E-value=0.0091  Score=36.12  Aligned_cols=104  Identities=18%  Similarity=0.249  Sum_probs=61.5

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682--3475457
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLS  283 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~  283 (674)
                      +.+|+|-.||||.+....    ....       ...++|.|+++...+.|+.+.-    .        .+|  ..+|...
T Consensus        44 g~rVLDiGCG~G~~~~~l----~~~~-------~~~V~gvD~S~~~l~~a~~~~~----~--------~~v~~~~~d~~~  100 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWA----HEHG-------ASYVLGLDLSEKMLARARAAGP----D--------TGITYERADLDK  100 (243)
T ss_dssp             TCEEEEETCTTCHHHHHH----HHTT-------CSEEEEEESCHHHHHHHHHTSC----S--------SSEEEEECCGGG
T ss_pred             CCEEEEECCCCCHHHHHH----HHCC-------CCEEEEECCHHHHHHHHHHHCC----C--------CCCCCCCCCCCC
T ss_conf             899999788898999999----9759-------8789998757989999986134----4--------433310023344


Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             99986641899981685676531000111234422666653577774770659999999996146657880799973897
Q gi|254780836|r  284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS  363 (674)
Q Consensus       284 ~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs  363 (674)
                      - .+++..||+|+++=-+  .|-.+                      .    -.+|..+-..|++    ||.+.+...+ 
T Consensus       101 ~-~~~~~~fD~V~~~~~l--~~~~d----------------------~----~~~l~ei~r~Lkp----gG~li~~~~~-  146 (243)
T 3bkw_A          101 L-HLPQDSFDLAYSSLAL--HYVED----------------------V----ARLFRTVHQALSP----GGHFVFSTEH-  146 (243)
T ss_dssp             C-CCCTTCEEEEEEESCG--GGCSC----------------------H----HHHHHHHHHHEEE----EEEEEEEEEC-
T ss_pred             C-CCCCCCCCCCCCEEEE--EECCC----------------------H----HHHHHHHHHHCCC----CCEEEEEECC-
T ss_conf             6-6554345456551367--61689----------------------9----9999999998385----8489999747-


Q ss_pred             CCC
Q ss_conf             134
Q gi|254780836|r  364 PLF  366 (674)
Q Consensus       364 ~LF  366 (674)
                      |+|
T Consensus       147 ~~~  149 (243)
T 3bkw_A          147 PIY  149 (243)
T ss_dssp             HHH
T ss_pred             CCC
T ss_conf             874


No 138
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=95.82  E-value=0.011  Score=35.58  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=66.0

Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r  170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      .+++-||+| +-..|++-+++.+          ......+|.+--||+|.+ |..   +.+.+        ..+++.|++
T Consensus         3 ~~~k~GQnFL~d~~i~~~Iv~~~----------~~~~~d~VlEIGpG~G~L-T~~---L~~~~--------~~v~aiE~D   60 (245)
T 1yub_A            3 KNIKYSQNFLTSEKVLNQIIKQL----------NLKETDTVYEIGTGKGHL-TTK---LAKIS--------KQVTSIELD   60 (245)
T ss_dssp             CCCCSCCCBCCCTTTHHHHHHHC----------CCCSSEEEEECSCCCSSC-SHH---HHHHS--------SEEEESSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHHH-HHH---HHHCC--------CCCEEECCC
T ss_conf             99887871478989999999945----------899999689979973599-999---99616--------500403404


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             78899999998980887533456666823475457999866418999816856765
Q gi|254780836|r  249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK  304 (674)
Q Consensus       249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~  304 (674)
                      +..+..++..         ......-.|..||-|.-|. +......|++|-||+.+
T Consensus        61 ~~l~~~l~~~---------~~~~~n~~ii~~D~l~~~~-~~~~~~~vv~NLPY~Is  106 (245)
T 1yub_A           61 SHLFNLSSEK---------LKLNTRVTLIHQDILQFQF-PNKQRYKIVGNIPYHLS  106 (245)
T ss_dssp             CSSSSSSSCT---------TTTCSEEEECCSCCTTTTC-CCSSEEEEEEECCSSSC
T ss_pred             HHHHHHHHHH---------HHCCCCCHHHHCCHHCCCC-CCCCCEEEEECCCHHHH
T ss_conf             4668988755---------4113400022011000144-45786568716757876


No 139
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B*
Probab=95.81  E-value=0.097  Score=29.41  Aligned_cols=162  Identities=10%  Similarity=-0.044  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r  178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA  257 (674)
Q Consensus       178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~  257 (674)
                      +-|+ -++|-+.|+- +.+. +  ...++.+|+|=.||||.+.+...+++.         ....+||.|+++...+.++.
T Consensus        54 w~p~-rSklaaai~~-gl~~-~--~lkpG~~VLdLG~G~G~~~~~la~~Vg---------~~G~V~aVD~s~~~l~~a~~  119 (232)
T 3id6_C           54 WNAF-RSKLAGAILK-GLKT-N--PIRKGTKVLYLGAASGTTISHVSDIIE---------LNGKAYGVEFSPRVVRELLL  119 (232)
T ss_dssp             CCTT-TCHHHHHHHT-TCSC-C--SCCTTCEEEEETCTTSHHHHHHHHHHT---------TTSEEEEEECCHHHHHHHHH
T ss_pred             ECCC-CCHHHHHHHH-HHHH-C--CCCCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHH
T ss_conf             7875-0289999984-3330-5--889999999967718899999999715---------68769999799999999997


Q ss_pred             HHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             98980887533456666823-47545799986641899981685676531000111234422666653577774770659
Q gi|254780836|r  258 GMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM  336 (674)
Q Consensus       258 nMli~g~~~d~~~~~~~NI~-~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~  336 (674)
                      ..--++...        ++. .........+....||+|...-.+--                             + .-
T Consensus       120 ~a~~~~n~~--------~v~~d~~~~~~~~~~~~~vd~i~~~~~~~~-----------------------------~-~~  161 (232)
T 3id6_C          120 VAQRRPNIF--------PLLADARFPQSYKSVVENVDVLYVDIAQPD-----------------------------Q-TD  161 (232)
T ss_dssp             HHHHCTTEE--------EEECCTTCGGGTTTTCCCEEEEEECCCCTT-----------------------------H-HH
T ss_pred             HHHHCCCCC--------CEEECCCCHHHCCCCCCEEEEEEEECCCCC-----------------------------H-HH
T ss_conf             656546776--------301014675453777736999998525732-----------------------------1-99


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCC-CCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf             99999999614665788079997389-713477644326899999988494-688831767
Q gi|254780836|r  337 LFLMHLANKLELPPNGGGRAAIVLSS-SPLFNGRAGSGESEIRRWLLENDL-IEAIVALPT  395 (674)
Q Consensus       337 lFlqh~i~klk~~~~~ggr~aIV~ng-s~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~  395 (674)
                      .|+.++...|||    ||+..|+... |.--+++...--....+.|-+.++ +.-+|.|.+
T Consensus       162 ~~l~~~~~~LKp----gG~lvi~~k~~~~d~~~~~~~~~~~~i~~L~~~GF~~~E~i~L~p  218 (232)
T 3id6_C          162 IAIYNAKFFLKV----NGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP  218 (232)
T ss_dssp             HHHHHHHHHEEE----EEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT
T ss_pred             HHHHHHHHHCCC----CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             999999851589----978999997454668787668999999999985997999964788


No 140
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=95.74  E-value=0.032  Score=32.58  Aligned_cols=47  Identities=15%  Similarity=0.155  Sum_probs=35.0

Q ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       204 ~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      ++..+++|--||+|+++..+....       +   ....+|.|+.+...++|+...-
T Consensus       241 kpgd~fLDLGCG~G~vvl~aA~~~-------g---~~~viGIDis~~~l~~A~~~~~  287 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALEC-------G---CALSFGCEIMDDASDLTILQYE  287 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-------C---CSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHC-------C---CCEEEEEECCHHHHHHHHHHHH
T ss_conf             999989974899989999999975-------9---9879999799999999999999


No 141
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=95.72  E-value=0.081  Score=29.93  Aligned_cols=164  Identities=13%  Similarity=0.103  Sum_probs=84.5

Q ss_pred             CCCCCCHHHHHH-HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             575368179999-9999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeffTPR~Vi~-Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      +|-|| .++.+. +.+.++          .|.++..|.|-|||-||=-+.....+.    .     ...++..|+++.-.
T Consensus        84 ~G~~~-iQd~sS~l~~~~L----------~~~pg~~VLDlCAAPGgKt~~la~~l~----~-----~g~l~a~d~~~~R~  143 (456)
T 3m4x_A           84 AGYEY-SQEPSAMIVGTAA----------AAKPGEKVLDLCAAPGGKSTQLAAQMK----G-----KGLLVTNEIFPKRA  143 (456)
T ss_dssp             TTSCE-ECCTTTHHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHHT----T-----CSEEEEECSSHHHH
T ss_pred             CCCEE-EECHHHHHHHHHH----------CCCCCCEEEEECCCCCHHHHHHHHHHC----C-----CCEEEEEECCHHHH
T ss_conf             98199-9788999999970----------999999898816786479999999700----8-----97588630646777


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC-C
Q ss_conf             9999998980887533456666823--475457999866418999816856765--3100011123442266665357-7
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQ--QGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP-G  327 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~--~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~-g  327 (674)
                      .+.+.|+--.|..         |+.  ..|...-.......||.||..+|=+-.  |.++.+...         ++.. .
T Consensus       144 ~~l~~nl~r~g~~---------n~~v~~~d~~~~~~~~~~~fD~VLvDaPCSG~G~~rk~p~~~~---------~~~~~~  205 (456)
T 3m4x_A          144 KILSENIERWGVS---------NAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIK---------EWTEES  205 (456)
T ss_dssp             HHHHHHHHHHTCS---------SEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHH---------HCCTTH
T ss_pred             HHHHHHHHHCCCC---------CEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHH---------HCCHHH
T ss_conf             8998768752787---------4899932544355212465557997487677873066806655---------424446


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             7747706599999999961466578807999738971347764432689999998849
Q gi|254780836|r  328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND  385 (674)
Q Consensus       328 lP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d  385 (674)
                      +-.-+.-|.--|.+.+..|++    ||++.-..  -+++.-   -.|..|+ +++++.
T Consensus       206 ~~~~~~~Q~~iL~~a~~~lkp----GG~lvYST--CS~~~e---ENE~vV~-~~L~~~  253 (456)
T 3m4x_A          206 PLYCQKRQQEILSSAIKMLKN----KGQLIYST--CTFAPE---ENEEIIS-WLVENY  253 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEE----EEEEEEEE--SCCCGG---GTHHHHH-HHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCHH---HCHHHHH-HHHHHC
T ss_conf             778999999999999975889----98899991--899745---2999999-999869


No 142
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=95.65  E-value=0.11  Score=29.01  Aligned_cols=151  Identities=13%  Similarity=0.078  Sum_probs=86.5

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      ...+|.|-.||+|.+....    .   ...    ...++|.|+++...+.|+..+--.+...       -++..+|-. +
T Consensus        79 ~~~~vLDiGcG~G~~~~~l----l---~~~----~~~v~~vD~s~~~l~~ar~~~~~~~~~~-------v~~~~~d~~-~  139 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRL----L---LPL----FREVDMVDITEDFLVQAKTYLGEEGKRV-------RNYFCCGLQ-D  139 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHT----T---TTT----CSEEEEEESCHHHHHHHHHHTGGGGGGE-------EEEEECCGG-G
T ss_pred             CCCEEEEECCCCCHHHHHH----H---HCC----CCEEEEEECCHHHHHHHHHHHHHCCCCC-------EEEEECCHH-H
T ss_conf             8876999015707869999----9---705----9989999999999999998776504663-------489957888-7


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEECC--
Q ss_conf             998664189998168567653100011123442266665357777477065-99999999961466578807999738--
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLS--  361 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~-~lFlqh~i~klk~~~~~ggr~aIV~n--  361 (674)
                      -.+++.+||+|+++--+.-                        +   +|.+ ..|+..+...|+|    ||++.|.-+  
T Consensus       140 l~~~~~~fD~I~~~~vl~h------------------------l---~d~~~~~~l~~~~~~Lkp----gG~lii~d~~~  188 (241)
T 2ex4_A          140 FTPEPDSYDVIWIQWVIGH------------------------L---TDQHLAEFLRRCKGSLRP----NGIIVIKDNMA  188 (241)
T ss_dssp             CCCCSSCEEEEEEESCGGG------------------------S---CHHHHHHHHHHHHHHEEE----EEEEEEEEEEB
T ss_pred             CCCCCCCCCEEEECCCHHC------------------------C---CCHHHHHHHHHHHHHCCC----CEEEEEEEECC
T ss_conf             1577578318996465104------------------------7---567889999999983199----86999998248


Q ss_pred             -CCCCCCCCCC---CCHHHHHHHHHHCCC--EEEE--EECCCCCCCCCCCCEEEEEE
Q ss_conf             -9713477644---326899999988494--6888--31767765578861699999
Q gi|254780836|r  362 -SSPLFNGRAG---SGESEIRRWLLENDL--IEAI--VALPTDLFFRTNIATYLWIL  410 (674)
Q Consensus       362 -gs~LF~G~ag---sGEs~IRk~lie~d~--ieaI--I~LP~~lFynTgI~t~Iwil  410 (674)
                       .+..+.....   ....++|+-+-+.++  ++.-  -.+|.++|     +++.++|
T Consensus       189 ~~~~~~d~~~~~~~rs~~~~~~l~~~aGf~iv~~~~q~~~P~~l~-----~V~~~~l  240 (241)
T 2ex4_A          189 QEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIY-----HVYSFAL  240 (241)
T ss_dssp             SSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSC-----EEEEEEE
T ss_pred             CCCCCCCCCCCEEECCHHHHHHHHHHCCCEEEEEEEECCCCCCEE-----EEEEEEE
T ss_conf             898611377852889999999999987998999998579998647-----9999997


No 143
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative, SAM-dependent methyltransferase; HET: SAI; 1.94A {Leishmania major strain friedlin} SCOP: c.66.1.42
Probab=95.54  E-value=0.12  Score=28.77  Aligned_cols=142  Identities=13%  Similarity=0.119  Sum_probs=79.7

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|+|-.||+|.+.....    ...       ...+.|.|+++...+.|+.++-  +...       .+...+| +.+-
T Consensus        94 ~~~vLDiGcG~G~~t~~ll----~~~-------~~~V~~vD~s~~~l~~a~~~~~--~~~~-------~~~~~~d-~~~~  152 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLL----TKL-------YATTDLLEPVKHMLEEAKRELA--GMPV-------GKFILAS-META  152 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTH----HHH-------CSEEEEEESCHHHHHHHHHHTT--TSSE-------EEEEESC-GGGC
T ss_pred             CCEEEEECCCCCHHHHHHH----HHC-------CCEEEEEECCHHHHHHHHHCCC--CCCE-------EEEEECC-HHHC
T ss_conf             9738996678859999999----863-------9858999198899999864015--7742-------7999778-7568


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEECCCC-
Q ss_conf             98664189998168567653100011123442266665357777477065-9999999996146657880799973897-
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSS-  363 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~-~lFlqh~i~klk~~~~~ggr~aIV~ngs-  363 (674)
                      .+++.+||+|+++-.+.-        +                   .+-+ ..|+..+...|++    ||++.|.-+.+ 
T Consensus       153 ~~~~~~fD~I~~~~~l~h--------l-------------------~d~~~~~~l~~~~~~Lkp----gG~ivi~e~~~~  201 (254)
T 1xtp_A          153 TLPPNTYDLIVIQWTAIY--------L-------------------TDADFVKFFKHCQQALTP----NGYIFFKENCST  201 (254)
T ss_dssp             CCCSSCEEEEEEESCGGG--------S-------------------CHHHHHHHHHHHHHHEEE----EEEEEEEEEBC-
T ss_pred             CCCCCCCCEEEEEEEHHC--------C-------------------CHHHHHHHHHHHHHHCCC----CCEEEEEECCCC
T ss_conf             887776346764211004--------7-------------------614578999999998189----968999964777


Q ss_pred             ---CCCCCCC---CCCHHHHHHHHHHCCC--EEEEE--ECCCCCCC
Q ss_conf             ---1347764---4326899999988494--68883--17677655
Q gi|254780836|r  364 ---PLFNGRA---GSGESEIRRWLLENDL--IEAIV--ALPTDLFF  399 (674)
Q Consensus       364 ---~LF~G~a---gsGEs~IRk~lie~d~--ieaII--~LP~~lFy  399 (674)
                         ..+.-.-   ...+.++++.+-+.++  ++..+  .+|.++|-
T Consensus       202 ~~~~~~d~~~~s~~rs~~~~~~l~~~aGf~vi~~~~q~~fP~~l~~  247 (254)
T 1xtp_A          202 GDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFP  247 (254)
T ss_dssp             -CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTTSCC
T ss_pred             CCCCEECCCCCCEECCHHHHHHHHHHCCCEEEEEEEECCCCCCEEE
T ss_conf             8763111567743489999999999879989999973699875068


No 144
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=95.42  E-value=0.044  Score=31.68  Aligned_cols=93  Identities=8%  Similarity=-0.068  Sum_probs=54.5

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      |++-+..+++-.|.+.|          ...+..+|.|-.||||-+-.... .+   .        .+++|.|++++....
T Consensus        50 g~~~s~p~~~a~~l~~L----------~l~~g~~VLeIG~GsGy~ta~La-~l---~--------~~V~~vE~~~~~~~~  107 (231)
T 1vbf_A           50 GINTTALNLGIFMLDEL----------DLHKGQKVLEIGTGIGYYTALIA-EI---V--------DKVVSVEINEKMYNY  107 (231)
T ss_dssp             TEEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSHHHHHHH-HH---S--------SEEEEEESCHHHHHH
T ss_pred             CCEECCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHH-HH---C--------CEEEEECCCHHHHHH
T ss_conf             96101489999999971----------89997989997798778899999-85---6--------787676289999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             999989808875334566668234754579998664189998168
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP  299 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP  299 (674)
                      |+.++-  ...       .-++..||-.. .......||.|+.+-
T Consensus       108 A~~~~~--~~~-------nv~~~~gDg~~-g~~~~~pfD~Iiv~~  142 (231)
T 1vbf_A          108 ASKLLS--YYN-------NIKLILGDGTL-GYEEEKPYDRVVVWA  142 (231)
T ss_dssp             HHHHHT--TCS-------SEEEEESCGGG-CCGGGCCEEEEEESS
T ss_pred             HHHHHC--CCC-------EEEEEECCHHC-CCCCCCCEEEEEECC
T ss_conf             998740--686-------26898663202-873469857999857


No 145
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=95.36  E-value=0.092  Score=29.54  Aligned_cols=137  Identities=10%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCC
Q ss_conf             7640311766540468999999999853100533322550466667889999999898088753345666682--34754
Q gi|254780836|r  204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGST  281 (674)
Q Consensus       204 ~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdT  281 (674)
                      .++.+|+|-.||||.+.+...+.+    +      ...+||.|++|+..+.++...-  ..         .|+  ..+|.
T Consensus        73 kpg~~VLDlGcGtG~~~~~la~~~----~------~G~V~aVDiSp~mi~~a~~~a~--~~---------~ni~~i~~d~  131 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIA----D------KGIVYAIEYAPRIMRELLDACA--ER---------ENIIPILGDA  131 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHT----T------TSEEEEEESCHHHHHHHHHHTT--TC---------TTEEEEECCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHH--HC---------CCCEEEEEEC
T ss_conf             999999996797798999999758----9------9659999799899999998776--44---------8731798413


Q ss_pred             CCCC--CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             5799--98664189998168567653100011123442266665357777477065999999999614665788079997
Q gi|254780836|r  282 LSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV  359 (674)
Q Consensus       282 L~~d--~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV  359 (674)
                      ...+  ......+|++..+-.+-                             .+ --.++.++-.-||+    ||+..++
T Consensus       132 ~~~~~~~~~~~~vd~i~~~~~~~-----------------------------~~-~~~~l~~~~~~LKp----gG~l~i~  177 (230)
T 1fbn_A          132 NKPQEYANIVEKVDVIYEDVAQP-----------------------------NQ-AEILIKNAKWFLKK----GGYGMIA  177 (230)
T ss_dssp             TCGGGGTTTSCCEEEEEECCCST-----------------------------TH-HHHHHHHHHHHEEE----EEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEEEECCCH-----------------------------HH-HHHHHHHHHHHCCC----CCEEEEE
T ss_conf             58642356663599997101242-----------------------------78-99999998864589----9689999


Q ss_pred             CCCCCC-CCCCCCCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf             389713-477644326899999988494-688831767
Q gi|254780836|r  360 LSSSPL-FNGRAGSGESEIRRWLLENDL-IEAIVALPT  395 (674)
Q Consensus       360 ~ngs~L-F~G~agsGEs~IRk~lie~d~-ieaII~LP~  395 (674)
                      ....+. -++....--.+.++.|-+.++ +.-++.|.+
T Consensus       178 ~k~~s~d~~~~~~~~~~~~~~~L~~aGF~ive~i~L~p  215 (230)
T 1fbn_A          178 IKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP  215 (230)
T ss_dssp             EEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTT
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             97145578778789999999999987994899975798


No 146
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=95.23  E-value=0.026  Score=33.13  Aligned_cols=121  Identities=12%  Similarity=-0.061  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      +++.+.+++++.           ..+..|+|-.||||.+...    +.+..       ...+.|.|+++....+|+-+.-
T Consensus        47 ~~~~~~l~~~~~-----------~~g~rVLeiG~G~G~~a~~----la~~~-------~~~vt~id~s~~~l~~a~~~~~  104 (236)
T 1zx0_A           47 TPYMHALAAAAS-----------SKGGRVLEVGFGMAIAASK----VQEAP-------IDEHWIIECNDGVFQRLRDWAP  104 (236)
T ss_dssp             HHHHHHHHHHHT-----------TTCEEEEEECCTTSHHHHH----HHTSC-------EEEEEEEECCHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHC-----------CCCCEEEEECCCCCHHHHH----HHHCC-------CCEEEEEECCHHHHHHHHHHHH
T ss_conf             999999997534-----------4898499988885099999----99729-------9779998089899999999887


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             80887533456666823475457-99986641899981685676531000111234422666653577774770659999
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL  339 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~-~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl  339 (674)
                      -.+...        .+..++... ...++...||.|+.++.....  .      ..+.              .+ .-.|+
T Consensus       105 ~~~~~~--------~~~~~~~~~~~~~~~~~~fD~i~~D~~~~~~--~------~~~~--------------~~-~~~~~  153 (236)
T 1zx0_A          105 RQTHKV--------IPLKGLWEDVAPTLPDGHFDGILYDTYPLSE--E------TWHT--------------HQ-FNFIK  153 (236)
T ss_dssp             GCSSEE--------EEEESCHHHHGGGSCTTCEEEEEECCCCCBG--G------GTTT--------------HH-HHHHH
T ss_pred             HCCCCC--------CEEECHHHHHHCCCCCCCCCCEEECCEEECC--C------EECC--------------CC-HHHHH
T ss_conf             558862--------0232008876201223566744521162012--2------0102--------------34-68888


Q ss_pred             HHHHHHHCCCCCCCCEEEE
Q ss_conf             9999961466578807999
Q gi|254780836|r  340 MHLANKLELPPNGGGRAAI  358 (674)
Q Consensus       340 qh~i~klk~~~~~ggr~aI  358 (674)
                      .++...|||    ||+..+
T Consensus       154 ~~~~RvLkP----GG~l~~  168 (236)
T 1zx0_A          154 NHAFRLLKP----GGVLTY  168 (236)
T ss_dssp             HTHHHHEEE----EEEEEE
T ss_pred             HHHHHEECC----CCEEEE
T ss_conf             998620678----827999


No 147
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=95.22  E-value=0.041  Score=31.87  Aligned_cols=88  Identities=11%  Similarity=0.110  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      +.+.+.++++|..    .   .+....+|.|-.||||.++....    +..+      ...++|.|+++...+.|+..  
T Consensus        68 ~~~~~~~~~~l~~----~---~~~~~~~vLDiGcG~G~~~~~l~----~~~~------~~~~~gvD~s~~~l~~a~~~--  128 (269)
T 1p91_A           68 QPLRDAIVAQLRE----R---LDDKATAVLDIGCGEGYYTHAFA----DALP------EITTFGLDVSKVAIKAAAKR--  128 (269)
T ss_dssp             HHHHHHHHHHHHH----H---SCTTCCEEEEETCTTSTTHHHHH----HTCT------TSEEEEEESCHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHH----H---CCCCCCEEEEECCCCCHHHHHHH----HHCC------CCEEEEEECCHHHHHHHHHC--
T ss_conf             8999999999985----4---78889969996898969999999----8689------96899997958899999851--


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             80887533456666823475457999866418999816
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN  298 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN  298 (674)
                      ..+          -....||.. +-.+++..||+|++.
T Consensus       129 ~~~----------~~~~~~d~~-~lp~~d~sfD~v~~~  155 (269)
T 1p91_A          129 YPQ----------VTFCVASSH-RLPFSDTSMDAIIRI  155 (269)
T ss_dssp             CTT----------SEEEECCTT-SCSBCTTCEEEEEEE
T ss_pred             CCC----------CCCEECCHH-HCCCCCCCEEEEECC
T ss_conf             775----------430002342-167899857787420


No 148
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=95.07  E-value=0.023  Score=33.54  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      .++|+|-.||+|.++...    .+..      ....+.|.|+++.....|+-++-..+.......  ..+...++ +.+.
T Consensus        30 ~~rVLDvGCG~G~~~~~L----a~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~--~~~~~~~~-~~~~   96 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLL----LKDK------SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRK--RISLFQSS-LVYR   96 (219)
T ss_dssp             CCEEEEETCTTCHHHHHH----HTST------TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHT--TEEEEECC-SSSC
T ss_pred             CCEEEEEECCCCHHHHHH----HHHC------CCCEEEECCCCHHHHHHHHHHHHHCCCCHHHCC--CCCCCCCC-HHHC
T ss_conf             498999818789999999----9838------974563225999999999998655044123200--10001145-3325


Q ss_pred             CCCCCEEEEEEECCCC
Q ss_conf             9866418999816856
Q gi|254780836|r  286 LFTGKRFHYCLSNPPF  301 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPF  301 (674)
                      .+...+||+|++.=-+
T Consensus        97 ~~~~~~fD~i~~~~vl  112 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVI  112 (219)
T ss_dssp             CGGGTTCSEEEEESCG
T ss_pred             CHHCCCCCEEHHHHHH
T ss_conf             0003655456275569


No 149
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=95.02  E-value=0.046  Score=31.54  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=59.1

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682--3475457
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLS  283 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~  283 (674)
                      ..+|.|-.||||.++..    +.   +.     ...+.|.|+++...+.|+...  .+.         .+|  ..+|-+.
T Consensus        52 ~~~vLDvGcG~G~~~~~----la---~~-----~~~v~gvD~s~~~l~~a~~~~--~~~---------~~i~~~~~d~~~  108 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEK----LA---PH-----CKRLTVIDVMPRAIGRACQRT--KRW---------SHISWAATDILQ  108 (216)
T ss_dssp             EEEEEEECCTTSHHHHH----HG---GG-----EEEEEEEESCHHHHHHHHHHT--TTC---------SSEEEEECCTTT
T ss_pred             CCEEEEEECCCCHHHHH----HH---HH-----CCEEEEEECCHHHHHHHHHHH--CCC---------CEEECCCCCHHH
T ss_conf             99099963889899999----99---70-----998999969989999999861--546---------223101020223


Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             99986641899981685676531000111234422666653577774770659-999999996146657880799973
Q gi|254780836|r  284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       284 ~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      .  .+..+||+|+++--+-  |                      +|..  .++ .++..+...|+|    ||++.|..
T Consensus       109 ~--~~~~~fD~V~~~~vl~--~----------------------~~~~--~~~~~~l~~~~~~L~p----gG~l~i~~  154 (216)
T 3ofk_A          109 F--STAELFDLIVVAEVLY--Y----------------------LEDM--TQMRTAIDNMVKMLAP----GGHLVFGS  154 (216)
T ss_dssp             C--CCSCCEEEEEEESCGG--G----------------------SSSH--HHHHHHHHHHHHTEEE----EEEEEEEE
T ss_pred             H--CCCCCCCEEEECCCHH--H----------------------CCCH--HHHHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             2--3578714899845577--5----------------------8998--9999999999987798----83899996


No 150
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=94.78  E-value=0.2  Score=27.30  Aligned_cols=155  Identities=11%  Similarity=-0.003  Sum_probs=81.5

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      +|.|..||||.....    +.+.        ...++|.|+++...+.|+.+.--.|.+..        +..+|-. +-.+
T Consensus        32 ~vLDlGcG~G~~~~~----la~~--------G~~V~~vD~s~~~l~~a~~~~~~~~~~~~--------~~~~d~~-~~~~   90 (202)
T 2kw5_A           32 KILCLAEGEGRNACF----LASL--------GYEVTAVDQSSVGLAKAKQLAQEKGVKIT--------TVQSNLA-DFDI   90 (202)
T ss_dssp             EEEECCCSCTHHHHH----HHTT--------TCEEEEECSSHHHHHHHHHHHHHHTCCEE--------EECCBTT-TBSC
T ss_pred             CEEEECCCCCHHHHH----HHHC--------CCCEEEEECCHHHHHHHHHHHHHHCCCEE--------EEECCHH-HCCC
T ss_conf             399983778999999----9986--------99146777789999999998887199558--------9982263-3899


Q ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC--CCCC
Q ss_conf             66418999816856765310001112344226666535777747706599999999961466578807999738--9713
Q gi|254780836|r  288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS--SSPL  365 (674)
Q Consensus       288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n--gs~L  365 (674)
                      +...||.+++.-.+-                          |+. + .-.++..+...|+|    ||.+.+...  ...-
T Consensus        91 ~~~~~d~~~~~~~~~--------------------------~~~-~-~~~~l~~~~~~Lkp----gG~~~~~~~~~~~~~  138 (202)
T 2kw5_A           91 VADAWEGIVSIFCHL--------------------------PSS-L-RQQLYPKVYQGLKP----GGVFILEGFAPEQLQ  138 (202)
T ss_dssp             CTTTCSEEEEECCCC--------------------------CHH-H-HHHHHHHHHTTCCS----SEEEEEEEECTTTGG
T ss_pred             CCCCEEEEEEEEEEC--------------------------CHH-H-HHHHHHHHHHHCCC----CCEEEEEECCCCCCC
T ss_conf             889599985157853--------------------------788-9-99999999998197----949999981677644


Q ss_pred             C-CCCCC-----CCHHHHHHHHHHCCCE--EEE-EECCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             4-77644-----3268999999884946--888-317677655788616999994688743
Q gi|254780836|r  366 F-NGRAG-----SGESEIRRWLLENDLI--EAI-VALPTDLFFRTNIATYLWILSNRKTEE  417 (674)
Q Consensus       366 F-~G~ag-----sGEs~IRk~lie~d~i--eaI-I~LP~~lFynTgI~t~Iwil~k~K~~~  417 (674)
                      + .|+..     -.+.++|+.+-.-++.  +.. ..+++.. +.+|.+..|.++- +|+++
T Consensus       139 ~~~g~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~eg~-~h~g~a~vi~lva-rK~e~  197 (202)
T 2kw5_A          139 YNTGGPKDLDLLPKLETLQSELPSLNWLIANNLERNLDEGA-YHQGKAALIQLLG-QKLEH  197 (202)
T ss_dssp             GTSCCSSSGGGCCCHHHHHHHCSSSCEEEEEEEEEECSCSS-SSCCEEEEEEEEE-CCCSS
T ss_pred             CCCCCCCCHHHCCCHHHHHHHCCCCCEEEEEEEEEEECCCC-CCCCCHHHEEEEE-EEECC
T ss_conf             56799999477899899998656682699999999704688-7777565289999-92555


No 151
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=94.76  E-value=0.044  Score=31.66  Aligned_cols=102  Identities=15%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|-+||||.+...    +   .+.      ..+.|.|+++...+.|+...--.+.+.        +...||-..-+ 
T Consensus        35 ~~VLD~GCG~G~~~~~----l---a~~------~~v~giD~s~~~l~~a~~~~~~~~~~i--------~~~~~d~~~~~-   92 (243)
T 3d2l_A           35 KRIADIGCGTGTATLL----L---ADH------YEVTGVDLSEEMLEIAQEKAMETNRHV--------DFWVQDMRELE-   92 (243)
T ss_dssp             CEEEEESCTTCHHHHH----H---TTT------SEEEEEESCHHHHHHHHHHHHHTTCCC--------EEEECCGGGCC-
T ss_pred             CEEEEECCCCCHHHHH----H---HHC------CEEEEEECCHHHHHHHHHHHHHCCCEE--------EECCCCHHCCC-
T ss_conf             9999968878799999----8---618------579999885188999887653012023--------31012000011-


Q ss_pred             CCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             866418999816-85676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r  287 FTGKRFHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       287 ~~~~kFD~vlaN-PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      ++ .+||.++.. =-|+  |                      +....+ .-.+++.+...|||    ||+.++-.
T Consensus        93 ~~-~~~d~v~~~~~s~~--~----------------------l~~~~~-~~~~l~~i~~~Lkp----gG~~v~~~  137 (243)
T 3d2l_A           93 LP-EPVDAITILCDSLN--Y----------------------LQTEAD-VKQTFDSAARLLTD----GGKLLFDV  137 (243)
T ss_dssp             CS-SCEEEEEECTTGGG--G----------------------CCSHHH-HHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             CC-CCCCCHHHHHHHHH--C----------------------CCCHHH-HHHHHHHHHHHCCC----CCEEEEEE
T ss_conf             24-34343134332211--1----------------------567157-78999999976488----81899995


No 152
>3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987}
Probab=94.75  E-value=0.046  Score=31.51  Aligned_cols=99  Identities=12%  Similarity=0.173  Sum_probs=58.2

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|+|-.||+|.++.    ++.+.        ...++|.|+++.....|+.+.              .++..++.-..+
T Consensus        33 ~~~ILDIGcG~G~~~~----~l~~~--------~~~v~giD~s~~~i~~a~~~~--------------~~~~~~~~~~~~   86 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGA----AIKEN--------GTRVSGIEAFPEAAEQAKEKL--------------DHVVLGDIETMD   86 (230)
T ss_dssp             CSEEEEETCTTSHHHH----HHHTT--------TCEEEEEESSHHHHHHHHTTS--------------SEEEESCTTTCC
T ss_pred             CCEEEEECCCCCHHHH----HHHHC--------CCEEEEEECCHHHHHHHHHCC--------------CEEEEEHHHHHC
T ss_conf             9969995188869999----99975--------998999967256666654113--------------123310102213


Q ss_pred             -CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             -98664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r  286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       286 -~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                       .+...+||+|+++==  ..|-.                         | .-.+++++-..|++    ||++.+..++
T Consensus        87 ~~~~~~~fD~I~~~~v--l~h~~-------------------------d-~~~~l~~i~~~Lkp----gG~lii~~~~  132 (230)
T 3cc8_A           87 MPYEEEQFDCVIFGDV--LEHLF-------------------------D-PWAVIEKVKPYIKQ----NGVILASIPN  132 (230)
T ss_dssp             CCSCTTCEEEEEEESC--GGGSS-------------------------C-HHHHHHHTGGGEEE----EEEEEEEEEC
T ss_pred             CCCCCCCEEEEEEEEE--EEECC-------------------------C-HHHHHHHHHHHCCC----CCEEEEEECC
T ss_conf             8888786358874005--55548-------------------------8-68999999863386----8789999789


No 153
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=94.72  E-value=0.028  Score=32.94  Aligned_cols=83  Identities=13%  Similarity=0.077  Sum_probs=48.9

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      .++|.|-.||+|.++...    .+..+      ...++|.|+++.....|+.++--.+....  .........++. ...
T Consensus        30 ~~rVLDvGcG~G~~~~~l----~~~~~------~~~v~gvD~s~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~-~~~   96 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKIL----LKDSF------FEQITGVDVSYRSLEIAQERLDRLRLPRN--QWERLQLIQGAL-TYQ   96 (217)
T ss_dssp             CCEEEEETCTTCHHHHHH----HHCTT------CSEEEEEESCHHHHHHHHHHHTTCCCCHH--HHTTEEEEECCT-TSC
T ss_pred             CCEEEEEECCCCHHHHHH----HHHCC------CCEEECCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCH-HHC
T ss_conf             398999818887999999----98476------52252103899999999998876245311--222210012664-344


Q ss_pred             CCCCCEEEEEEECCCC
Q ss_conf             9866418999816856
Q gi|254780836|r  286 LFTGKRFHYCLSNPPF  301 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPF  301 (674)
                      .++..+||+|++.--+
T Consensus        97 ~~~~~~fD~I~~~~vl  112 (217)
T 3jwh_A           97 DKRFHGYDAATVIEVI  112 (217)
T ss_dssp             CGGGCSCSEEEEESCG
T ss_pred             HHCCCCCCEEEEEHHH
T ss_conf             0004765655010338


No 154
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=94.66  E-value=0.023  Score=33.44  Aligned_cols=139  Identities=15%  Similarity=0.066  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r  180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM  259 (674)
Q Consensus       180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM  259 (674)
                      .|.++.-++...           +|   .|+|-.||+|.++..    +.+.        ...++|.|+++..-.+|+.+.
T Consensus        30 ~r~~i~~~~~~~-----------~g---rVLDiGcG~G~~~~~----la~~--------g~~v~gvD~S~~~l~~ar~~~   83 (203)
T 3h2b_A           30 DRVLIEPWATGV-----------DG---VILDVGSGTGRWTGH----LASL--------GHQIEGLEPATRLVELARQTH   83 (203)
T ss_dssp             THHHHHHHHHHC-----------CS---CEEEETCTTCHHHHH----HHHT--------TCCEEEECCCHHHHHHHHHHC
T ss_pred             CHHHHHHHCCCC-----------CC---CEEEECCCCCHHHHH----HHHC--------CCEEEEEECCHHHHHHHHHCC
T ss_conf             399999851589-----------98---499973788799999----9977--------996999969788999997448


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             98088753345666682347545799986641899981685676531000111234422666653577774770659999
Q gi|254780836|r  260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL  339 (674)
Q Consensus       260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl  339 (674)
                        .+          .+...+|-.. -.+++.+||+|+++=-+-  +                      +|+..  .-.++
T Consensus        84 --~~----------~~~~~~d~~~-l~~~~~~fD~I~~~~vl~--h----------------------~~~~d--~~~~l  124 (203)
T 3h2b_A           84 --PS----------VTFHHGTITD-LSDSPKRWAGLLAWYSLI--H----------------------MGPGE--LPDAL  124 (203)
T ss_dssp             --TT----------SEEECCCGGG-GGGSCCCEEEEEEESSST--T----------------------CCTTT--HHHHH
T ss_pred             --CC----------CEEEECCCCC-CCCCCCCCCEEEEECCCC--C----------------------CCHHH--HHHHH
T ss_conf             --87----------3499862101-223456666899946511--4----------------------99799--99999


Q ss_pred             HHHHHHHCCCCCCCCEEEEECC-CCC---CCCCCCC---CCHHHHHHHHHHCCCE
Q ss_conf             9999961466578807999738-971---3477644---3268999999884946
Q gi|254780836|r  340 MHLANKLELPPNGGGRAAIVLS-SSP---LFNGRAG---SGESEIRRWLLENDLI  387 (674)
Q Consensus       340 qh~i~klk~~~~~ggr~aIV~n-gs~---LF~G~ag---sGEs~IRk~lie~d~i  387 (674)
                      +++...|+|    ||++.+.+. +..   +......   -...++++.+-+.++-
T Consensus       125 ~~~~~~Lkp----gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~  175 (203)
T 3h2b_A          125 VALRMAVED----GGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQ  175 (203)
T ss_dssp             HHHHHTEEE----EEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEE
T ss_pred             HHHHHHCCC----CCEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             999987689----829999995588712103765654058999999999987998


No 155
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=94.63  E-value=0.095  Score=29.48  Aligned_cols=96  Identities=15%  Similarity=0.147  Sum_probs=57.0

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf             0311766540468999999999853100533322550466667889999999898088753345666682--34754579
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSK  284 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~~  284 (674)
                      ..|.|-.||||-++....    ..    .    ..+.|.|+++...++|+..    +.         .|+  ..+|-..-
T Consensus        48 ~~vLDvGcG~G~~~~~la----~~----g----~~v~gvD~S~~~l~~a~~~----~~---------~~v~~~~~d~~~~  102 (218)
T 3ou2_A           48 GDVLELASGTGYWTRHLS----GL----A----DRVTALDGSAEMIAEAGRH----GL---------DNVEFRQQDLFDW  102 (218)
T ss_dssp             SEEEEESCTTSHHHHHHH----HH----S----SEEEEEESCHHHHHHHGGG----CC---------TTEEEEECCTTSC
T ss_pred             CCEEEECCCCCHHHHHHH----HC----C----CEEEEEECCCHHHHHHHHH----HC---------CCEEECCCHHHCC
T ss_conf             979998898878999999----61----9----9899997831789999973----05---------5111001101012


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             9986641899981685676531000111234422666653577774770659-999999996146657880799973
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVL  360 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aIV~  360 (674)
                      +  ++.+||.|+++=-+.  |                      +|   +.++ .++..+-..|+|    ||++.++-
T Consensus       103 ~--~~~~fD~V~~~~~l~--h----------------------~~---~~~~~~~~~~~~r~Lkp----GG~l~~~~  146 (218)
T 3ou2_A          103 T--PDRQWDAVFFAHWLA--H----------------------VP---DDRFEAFWESVRSAVAP----GGVVEFVD  146 (218)
T ss_dssp             C--CSSCEEEEEEESCGG--G----------------------SC---HHHHHHHHHHHHHHEEE----EEEEEEEE
T ss_pred             C--CCCCCEEEEEEEEHH--H----------------------CC---HHHHHHHHHHHHHHCCC----CEEEEEEE
T ss_conf             5--688732899721266--4----------------------89---06899999999987398----83999997


No 156
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=94.60  E-value=0.15  Score=28.18  Aligned_cols=121  Identities=18%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCC--
Q ss_conf             0311766540468999999999853100533322550466667889999999898088753345666682--347545--
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTL--  282 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL--  282 (674)
                      .+|.|-.||+|++|+..+.    .++      ...+.|.|+.....+-+...++-.+.... ...+..||  ..||..  
T Consensus        51 p~iLeIGcG~G~~l~~lA~----~~p------~~~~iGiEi~~~~v~~~~~ri~~~~~~~a-~~~~l~Ni~~~~~da~~~  119 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSP----AFP------EDLILGMEIRVQVTNYVEDRIIALRNNTA-SKHGFQNINVLRGNAMKF  119 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHH----HST------TSEEEEEESCHHHHHHHHHHHHHHHHTC--CCSTTTTEEEEECCTTSC
T ss_pred             CEEEEECCCCCHHHHHHHH----HCC------CCCEEEEECCHHHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCHHHH
T ss_conf             8799982689989999998----689------87589885036899999999999987478-774987199993734888


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             79998664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r  283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                      -.+.++...+|.|..|-|  -+|-+.      .+.   ..|.-      +   --||..+...|++    ||++-++...
T Consensus       120 l~~~~~~~s~d~v~i~FP--DPw~K~------rh~---krRli------~---~~fl~~~~~~Lkp----gG~l~~~TD~  175 (246)
T 2vdv_E          120 LPNFFEKGQLSKMFFCFP--DPHFKQ------RKH---KARII------T---NTLLSEYAYVLKE----GGVVYTITDV  175 (246)
T ss_dssp             GGGTSCTTCEEEEEEESC--CCC---------------CSSCC------C---HHHHHHHHHHEEE----EEEEEEEESC
T ss_pred             HHHHCCCCCCCEEEEECC--CCCCCC------CCH---HHHHC------C---HHHHHHHHHHHCC----CCEEEEEECC
T ss_conf             887514677673489889--887731------101---13432------4---7789999997066----9899999799


No 157
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=94.51  E-value=0.24  Score=26.89  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++....+    .+++      ....|+|+ |..-.+++.+.--.|....      -....||-+..+
T Consensus       166 ~~~vLDvG~G~G~~~~~l~~----~~p~------~~~~~~Dl-p~~~~~a~~~~~~~~l~~r------v~~~~~d~~~~~  228 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQ----HNPN------AEIFGVDW-ASVLEVAKENARIQGVASR------YHTIAGSAFEVD  228 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHH----HCTT------CEEEEEEC-HHHHHHHHHHHHHHTCGGG------EEEEESCTTTSC
T ss_pred             CCEEEEECCCCCHHHHHHHH----HCCC------CCEEEECC-HHHHHHHHHHHHHHCCCEE------EEECCCCHHHCC
T ss_conf             98799979996299999998----5898------77377446-7888999987886087435------653245332055


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---C
Q ss_conf             9866418999816856765310001112344226666535777747706599999999961466578807999738---9
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---S  362 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---g  362 (674)
                      .  ...||+|++.--+- +|..+. .                        -.+|+++-..|+|    ||++.|+-.   .
T Consensus       229 ~--~~~~D~v~~~~vlh-~~~~~~-~------------------------~~~L~~~~~~L~p----gG~l~i~e~~~~~  276 (335)
T 2r3s_A          229 Y--GNDYDLVLLPNFLH-HFDVAT-C------------------------EQLLRKIKTALAV----EGKVIVFDFIPNS  276 (335)
T ss_dssp             C--CSCEEEEEEESCGG-GSCHHH-H------------------------HHHHHHHHHHEEE----EEEEEEEECCCCT
T ss_pred             C--CCCHHHHHHHHHHH-HCCHHH-H------------------------HHHHHHHHHHCCC----CCEEEEEECCCCC
T ss_conf             4--33135888630044-324567-9------------------------9999999986098----9589999634687


Q ss_pred             ---CCCC------------CCCCCCCHHHHHHHHHHCCC-EEEEEECCCCC
Q ss_conf             ---7134------------77644326899999988494-68883176776
Q gi|254780836|r  363 ---SPLF------------NGRAGSGESEIRRWLLENDL-IEAIVALPTDL  397 (674)
Q Consensus       363 ---s~LF------------~G~agsGEs~IRk~lie~d~-ieaII~LP~~l  397 (674)
                         ++.+            .++..-.+.++|+++-+.++ +..|+.+|..-
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~v~~~~~~~  327 (335)
T 2r3s_A          277 DRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQ  327 (335)
T ss_dssp             TSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             777855678999999873889876999999999997799168999878997


No 158
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=94.45  E-value=0.24  Score=26.81  Aligned_cols=46  Identities=11%  Similarity=-0.076  Sum_probs=31.5

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI  261 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli  261 (674)
                      .+.+|.|-+||+|.+...+       ...    ....+.|.++++.+.+.|+.++--
T Consensus        55 ~g~~vLDlGCG~G~~~~~~-------a~~----~~~~V~giD~S~~~i~~a~~~~~~  100 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLA-------ACD----SFQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTT-------GGG----TEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHH-------HHH----CCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             9988999788862899999-------984----797689951899999999999986


No 159
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=94.42  E-value=0.038  Score=32.05  Aligned_cols=117  Identities=13%  Similarity=0.129  Sum_probs=60.6

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH--HHCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             4031176654046899999999985310053332255046666788999999989--80887533-45666682347545
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML--IRRLESDP-RRDLSKNIQQGSTL  282 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl--i~g~~~d~-~~~~~~NI~~GdTL  282 (674)
                      ..+|+|-|||.||-|.   ++++     .+   ...+.|.++++++...|+.-.-  -.+..... ..+.......+|.+
T Consensus        49 ~~~VLDlgcG~GgDl~---K~~~-----~~---~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~~~~~~~~~~~~~~~d~~  117 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLE---KYFY-----GE---IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF  117 (302)
T ss_dssp             CCEEEETTCTTTTTHH---HHHH-----TT---CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH
T ss_pred             CCEEEEEEEEECHHHH---HHHH-----CC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCHH
T ss_conf             9979999500045279---9996-----69---98899997989999999999997212433100013305999861132


Q ss_pred             CC---CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE-
Q ss_conf             79---99866418999816856765310001112344226666535777747706599999999961466578807999-
Q gi|254780836|r  283 SK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI-  358 (674)
Q Consensus       283 ~~---d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI-  358 (674)
                      ..   ..+++.+||+|.+.--+-  +--+                    | ..  ...|++++-..|+|    ||+..+ 
T Consensus       118 ~~~~~~~~~~~~FDvVs~qfalH--y~f~--------------------~-~~--~~~~l~ni~~~Lkp----gG~fi~t  168 (302)
T 2vdw_A          118 VSSVREVFYFGKFNIIDWQFAIH--YSFH--------------------P-RH--YATVMNNLSELTAS----GGKVLIT  168 (302)
T ss_dssp             HHHHHTTCCSSCEEEEEEESCGG--GTCS--------------------T-TT--HHHHHHHHHHHEEE----EEEEEEE
T ss_pred             HHHHHHHCCCCCEEEEEECCHHH--HHCC--------------------C-HH--HHHHHHHHHHHCCC----CCEEEEE
T ss_conf             44455304789756999814065--6088--------------------5-89--99999999961389----9689999


Q ss_pred             ECCC
Q ss_conf             7389
Q gi|254780836|r  359 VLSS  362 (674)
Q Consensus       359 V~ng  362 (674)
                      +++|
T Consensus       169 ~~~~  172 (302)
T 2vdw_A          169 TMDG  172 (302)
T ss_dssp             EECH
T ss_pred             ECCH
T ss_conf             8069


No 160
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=94.36  E-value=0.25  Score=26.67  Aligned_cols=106  Identities=11%  Similarity=-0.050  Sum_probs=58.3

Q ss_pred             CCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             75368-17999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  175 EDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       175 GeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      |++-+ |.-+.++ .++|..        ...++.+|+|-.||||-+-....+.+    +.     ...++|.|++++...
T Consensus        55 ~~~is~P~~~a~~-le~L~~--------~~~pg~~VLdiG~GsGy~ta~la~lv----g~-----~g~V~~iE~~~~l~~  116 (226)
T 1i1n_A           55 QATISAPHMHAYA-LELLFD--------QLHEGAKALDVGSGSGILTACFARMV----GC-----TGKVIGIDHIKELVD  116 (226)
T ss_dssp             TEEECCHHHHHHH-HHHTTT--------TSCTTCEEEEETCTTSHHHHHHHHHH----CT-----TCEEEEEESCHHHHH
T ss_pred             CCEECHHHHHHHH-HHHHHH--------HCCCCCEEEEECCCCCHHHHHHHHHC----CC-----CCEEEEECCCHHHHH
T ss_conf             9775588999999-997253--------08999989997788899999999970----88-----864999868899999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             999998980887533456666823475457999866418999816856
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      .|+.|+--.+....  .........||-..- ......||.|+.+-+.
T Consensus       117 ~a~~~l~~~~~~~~--~~~~~~~~~gd~~~~-~~~~~~fD~I~~~~~~  161 (226)
T 1i1n_A          117 DSVNNVRKDDPTLL--SSGRVQLVVGDGRMG-YAEEAPYDAIHVGAAA  161 (226)
T ss_dssp             HHHHHHHHHCTHHH--HTSSEEEEESCGGGC-CGGGCCEEEEEECSBB
T ss_pred             HHHHHHHHCCCCCC--EEEEEEEEECCCCCC-CCCCCCEEEEEECCCH
T ss_conf             99999865486431--023467996564566-6556760168752677


No 161
>1r18_A Protein-L-isoaspartate(D-aspartate)-O- methyltransferase; isomerization, protein repair, S- adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=94.30  E-value=0.17  Score=27.90  Aligned_cols=109  Identities=13%  Similarity=0.006  Sum_probs=60.3

Q ss_pred             CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      .|++- .|.-++ .|.++|..        .-.+..+|+|-.||||-+-....+.+..    .+......++|.|++++.+
T Consensus        61 ~~~~is~P~~~a-~~l~~L~~--------~l~pg~~VLeIG~GtGy~ta~la~l~g~----~g~~~~~~V~~iE~~~~l~  127 (227)
T 1r18_A           61 GGVTISAPHMHA-FALEYLRD--------HLKPGARILDVGSGSGYLTACFYRYIKA----KGVDADTRIVGIEHQAELV  127 (227)
T ss_dssp             TTEEECCHHHHH-HHHHHTTT--------TCCTTCEEEEESCTTSHHHHHHHHHHHH----SCCCTTCEEEEEESCHHHH
T ss_pred             CCCEECCHHHHH-HHHHHHHH--------HCCCCCEEEEECCCCCHHHHHHHHHHHH----CCCCCCCEEEEEECCHHHH
T ss_conf             998863369999-99997675--------3899988999579977999999998533----1577766899994789999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             99999989808875334566668--2347545799986641899981685
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPP  300 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~N--I~~GdTL~~d~~~~~kFD~vlaNPP  300 (674)
                      ..|+.|+--++...    ....|  +..||-..- ......||.|+.+.-
T Consensus       128 ~~A~~~l~~~~~~~----l~~~nv~~~~~D~~~g-~~~~~~fD~I~v~~a  172 (227)
T 1r18_A          128 RRSKANLNTDDRSM----LDSGQLLIVEGDGRKG-YPPNAPYNAIHVGAA  172 (227)
T ss_dssp             HHHHHHHHHHHHHH----HHHTSEEEEESCGGGC-CGGGCSEEEEEECSC
T ss_pred             HHHHHHHHHCCCHH----CCCCCEEEEECCCCCC-CCCCCCCCEEEEEEC
T ss_conf             99999997605102----0566369997784557-765565236888511


No 162
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides 2}
Probab=94.21  E-value=0.031  Score=32.65  Aligned_cols=74  Identities=11%  Similarity=-0.027  Sum_probs=46.2

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf             403117665404689999999998531005333225504666678899999998980887533456666823475-4579
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-TLSK  284 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~Gd-TL~~  284 (674)
                      +.+|+|-.||||.+....    .+.    +    ..+.|.|+++...+.|+..+-=.+.          .+...+ ....
T Consensus        46 g~~vLdvGcG~G~~~~~l----~~~----g----~~v~g~D~S~~ml~~a~~~~~~~~~----------~~~~~~~~~~~  103 (261)
T 3iv6_A           46 GSTVAVIGASTRFLIEKA----LER----G----ASVTVFDFSQRMCDDLAEALADRCV----------TIDLLDITAEI  103 (261)
T ss_dssp             TCEEEEECTTCHHHHHHH----HHT----T----CEEEEEESCHHHHHHHHHHTSSSCC----------EEEECCTTSCC
T ss_pred             CCEEEEECCCCCHHHHHH----HHC----C----CEEEEECCCHHHHHHHHHHHHHCCC----------CCCEEECCHHH
T ss_conf             997999889788899999----967----9----9899977789999999997464056----------53302122532


Q ss_pred             CCCCCCEEEEEEECCCC
Q ss_conf             99866418999816856
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPF  301 (674)
                      ..+.+..||.|+++=.|
T Consensus       104 ~~~~~~~fD~Vv~~~~~  120 (261)
T 3iv6_A          104 PKELAGHFDFVLNDRLI  120 (261)
T ss_dssp             CGGGTTCCSEEEEESCG
T ss_pred             CCCCCCCCCEEEECCHH
T ss_conf             33457884689981378


No 163
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A*
Probab=94.11  E-value=0.16  Score=27.92  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCC--CC
Q ss_conf             311766540468999999999853100533322550466667889999999898088753345666682--34754--57
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGST--LS  283 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdT--L~  283 (674)
                      .|.|-.||+|.+|+..+.    .+++      ..+.|.|+.+...+-|....--.|+         .|+  ..||.  +.
T Consensus        37 liLEIGcG~G~~l~~~A~----~~P~------~~~iGiEi~~~~v~~a~~~~~~~~l---------~Ni~~~~~da~~~l   97 (218)
T 3dxy_A           37 VTLEIGFGMGASLVAMAK----DRPE------QDFLGIEVHSPGVGACLASAHEEGL---------SNLRVMCHDAVEVL   97 (218)
T ss_dssp             EEEEESCTTCHHHHHHHH----HCTT------SEEEEECSCHHHHHHHHHHHHHTTC---------SSEEEECSCHHHHH
T ss_pred             EEEEECCCCCHHHHHHHH----HCCC------CCEEEEEEECCCEEEEHHHCCHHHH---------CCCCEECCCHHHHH
T ss_conf             399972688899999999----6899------9889999723505530321201210---------45505645389999


Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             99986641899981685676531000111234422666653577774770659999999996146657880799973897
Q gi|254780836|r  284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS  363 (674)
Q Consensus       284 ~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs  363 (674)
                      ...+++..||.|..|-|=  +|-+.+     .++.    |.-         +--|+.-+...|++    ||++-+..+..
T Consensus        98 ~~~~~~~s~d~I~i~FPD--PWpKkk-----h~Kr----Rlv---------~~~fl~~l~~~Lk~----gG~l~l~TD~~  153 (218)
T 3dxy_A           98 HKMIPDNSLRMVQLFFPD--PWHKAR-----HNKR----RIV---------QVPFAELVKSKLQL----GGVFHMATDWE  153 (218)
T ss_dssp             HHHSCTTCEEEEEEESCC--CCCSGG-----GGGG----SSC---------SHHHHHHHHHHEEE----EEEEEEEESCH
T ss_pred             HHHCCCCCCCCCEECCCC--CCCCCC-----CCCC----CCC---------CHHHHHHHHHHCCC----CCEEEEEECCH
T ss_conf             875245645443231688--777743-----2462----556---------15589999986288----98999997979


Q ss_pred             CC
Q ss_conf             13
Q gi|254780836|r  364 PL  365 (674)
Q Consensus       364 ~L  365 (674)
                      .+
T Consensus       154 ~Y  155 (218)
T 3dxy_A          154 PY  155 (218)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99


No 164
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=93.81  E-value=0.047  Score=31.48  Aligned_cols=66  Identities=12%  Similarity=0.051  Sum_probs=40.2

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      +|+|-.||+|.++...    .+    ..    ..+.|.|++++..+.|+..+-   .+        -+...++ +. +..
T Consensus        45 ~VLDiGCG~G~~~~~l----~~----~~----~~v~giD~s~~~l~~a~~~~~---~~--------~~~~~~~-~~-~~~   99 (250)
T 2p7i_A           45 NLLELGSFKGDFTSRL----QE----HF----NDITCVEASEEAISHAQGRLK---DG--------ITYIHSR-FE-DAQ   99 (250)
T ss_dssp             CEEEESCTTSHHHHHH----TT----TC----SCEEEEESCHHHHHHHHHHSC---SC--------EEEEESC-GG-GCC
T ss_pred             CEEEEECCCCHHHHHH----HH----HC----CEEEEEECCHHHHHHHHHHHH---CC--------CCEEECC-HH-HCC
T ss_conf             3999928987999999----95----09----979999671688889998630---35--------4202022-22-126


Q ss_pred             CCCEEEEEEEC
Q ss_conf             66418999816
Q gi|254780836|r  288 TGKRFHYCLSN  298 (674)
Q Consensus       288 ~~~kFD~vlaN  298 (674)
                      ...+||+|++.
T Consensus       100 ~~~~fD~I~~~  110 (250)
T 2p7i_A          100 LPRRYDNIVLT  110 (250)
T ss_dssp             CSSCEEEEEEE
T ss_pred             CCCCCCHHHHH
T ss_conf             65566578864


No 165
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=93.79  E-value=0.098  Score=29.39  Aligned_cols=106  Identities=16%  Similarity=0.148  Sum_probs=60.6

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      +|+|-.||||.++....    +    .+    ..++|.|+++...++|+.+.--.+....    ..-....||-..-+  
T Consensus        85 ~vLDlGcG~G~~~~~la----~----~g----~~v~gvD~s~~ml~~a~~~~~~~~~~~~----~~~~~~~~d~~~~~--  146 (299)
T 3g2m_A           85 PVLELAAGMGRLTFPFL----D----LG----WEVTALELSTSVLAAFRKRLAEAPADVR----DRCTLVQGDMSAFA--  146 (299)
T ss_dssp             CEEEETCTTTTTHHHHH----T----TT----CCEEEEESCHHHHHHHHHHHHTSCHHHH----TTEEEEECBTTBCC--
T ss_pred             CEEEEECCCCHHHHHHH----H----CC----CEEEEEECCHHHHHHHHHHHHHCCCCCC----CCEEEEECCHHHCC--
T ss_conf             79999166778999999----7----79----9799996999999999999986476632----20447860321067--


Q ss_pred             CCCEEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             664189998168-56765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  288 TGKRFHYCLSNP-PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       288 ~~~kFD~vlaNP-PFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      .+.+||.|++.- -+.  +                      +|+  .....+++.+-..|+|    ||+..+-+.
T Consensus       147 ~~~~fD~v~~~~~~~~--~----------------------~~~--~~~~~~l~~~~~~L~p----gG~l~~~~~  191 (299)
T 3g2m_A          147 LDKRFGTVVISSGSIN--E----------------------LDE--ADRRGLYASVREHLEP----GGKFLLSLA  191 (299)
T ss_dssp             CSCCEEEEEECHHHHT--T----------------------SCH--HHHHHHHHHHHHHEEE----EEEEEEEEE
T ss_pred             CCCCCCEEEEEECCCC--C----------------------CCH--HHHHHHHHHHHHHCCC----CCEEEEEEE
T ss_conf             4555312489713600--3----------------------661--8899999999998487----828999987


No 166
>1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A*
Probab=93.49  E-value=0.18  Score=27.70  Aligned_cols=74  Identities=16%  Similarity=0.086  Sum_probs=43.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|+|--||||.+=..|.+        .+   ...+||.|.++ ...+++.+.--+|....      -.+..|+.- +-.
T Consensus        59 ~~VLDiG~G~G~ls~~aa~--------~G---a~~V~ave~s~-~~~~a~~~~~~n~~~~~------i~~~~~~~~-~l~  119 (340)
T 1or8_A           59 KVVLDVGSGTGILCMFAAK--------AG---ARKVIGIECSS-ISDYAVKIVKANKLDHV------VTIIKGKVE-EVE  119 (340)
T ss_dssp             CEEEEETCTTSHHHHHHHH--------TT---CSEEEEEECST-HHHHHHHHHHHTTCTTT------EEEEESCTT-TCC
T ss_pred             CEEEEECCCCCHHHHHHHH--------CC---CCEEEEECCHH-HHHHHHHHHHHCCCCCE------EEEEEEEEE-ECC
T ss_conf             9799983788799999998--------08---98899964619-99999999997287832------799973134-303


Q ss_pred             CCCCEEEEEEECC
Q ss_conf             8664189998168
Q gi|254780836|r  287 FTGKRFHYCLSNP  299 (674)
Q Consensus       287 ~~~~kFD~vlaNP  299 (674)
                      ++..+||+|++.+
T Consensus       120 ~~~~~~DvivsE~  132 (340)
T 1or8_A          120 LPVEKVDIIISEW  132 (340)
T ss_dssp             CSSSCEEEEEECC
T ss_pred             CCCCCCCEEEEEE
T ss_conf             7865310799750


No 167
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=93.11  E-value=0.22  Score=27.04  Aligned_cols=78  Identities=13%  Similarity=0.055  Sum_probs=47.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      ..|+|-.||||.+=..|.+        .+   ...+||.|.++. ...|+.+.--.|....      -.+..||...- .
T Consensus        40 ~~VLDiGcGtG~ls~~aa~--------~G---a~~V~a~d~s~~-~~~a~~~~~~~~~~~~------i~~i~~~~~~~-~  100 (328)
T 1g6q_1           40 KIVLDVGCGTGILSMFAAK--------HG---AKHVIGVDMSSI-IEMAKELVELNGFSDK------ITLLRGKLEDV-H  100 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHH--------TC---CSEEEEEESSTH-HHHHHHHHHHTTCTTT------EEEEESCTTTS-C
T ss_pred             CEEEEECCCCCHHHHHHHH--------CC---CCEEEEEECHHH-HHHHHHHHHHCCCCCE------EEEEEEEEECC-C
T ss_conf             9999978997799999997--------19---998999959799-9999999987387623------89997121005-5


Q ss_pred             CCCCEEEEEEECCCCCC
Q ss_conf             86641899981685676
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~  303 (674)
                      .+..+||+|++++....
T Consensus       101 ~~~~~~D~vvse~~~~~  117 (328)
T 1g6q_1          101 LPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             CSSSCEEEEEECCCBTT
T ss_pred             CCCCCCCEEEEEECCEE
T ss_conf             77666429999733203


No 168
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=93.00  E-value=0.26  Score=26.65  Aligned_cols=80  Identities=19%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r  205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK  284 (674)
Q Consensus       205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~  284 (674)
                      ...+|.|-.||+|.++....+    .+++      +...++|+ |....+++.++--.|....      -....||-+..
T Consensus       179 ~~~~vlDvGgG~G~~~~~l~~----~~p~------~~~~~~Dl-p~~~~~a~~~~~~~~l~~r------v~~~~gd~~~~  241 (352)
T 3mcz_A          179 RARTVIDLAGGHGTYLAQVLR----RHPQ------LTGQIWDL-PTTRDAARKTIHAHDLGGR------VEFFEKNLLDA  241 (352)
T ss_dssp             TCCEEEEETCTTCHHHHHHHH----HCTT------CEEEEEEC-GGGHHHHHHHHHHTTCGGG------EEEEECCTTCG
T ss_pred             CCCEEEEECCCCCHHHHHHHH----HCCE------EEEEEEEC-HHHHHHHHHHHHHCCCCCC------CEEEECCCCCC
T ss_conf             799899988988799999997----5983------48999601-9999999999986388655------25775441113


Q ss_pred             CCCCCCEEEEEEECCCC
Q ss_conf             99866418999816856
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPF  301 (674)
                      ...++..||++++.--+
T Consensus       242 ~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          242 RNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             GGGTTCCEEEEEEESCG
T ss_pred             CCCCCCCCCEEEECCEE
T ss_conf             45667776368751312


No 169
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=92.79  E-value=0.47  Score=24.96  Aligned_cols=136  Identities=17%  Similarity=0.170  Sum_probs=76.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             3117665404689999999998531005333225504666678899999998980887533456666823475457-999
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDL  286 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~-~d~  286 (674)
                      -|.|-.||+|.+++..+.    .++      ...+.|.|+.+...+.|.....-.|+..-       .+..||... .+.
T Consensus        41 ~vLEIGcG~G~~~~~lA~----~~p------~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv-------~~~~~da~~l~~~  103 (213)
T 2fca_A           41 IHIEVGTGKGQFISGMAK----QNP------DINYIGIELFKSVIVTAVQKVKDSEAQNV-------KLLNIDADTLTDV  103 (213)
T ss_dssp             EEEEECCTTSHHHHHHHH----HCT------TSEEEEECSCHHHHHHHHHHHHHSCCSSE-------EEECCCGGGHHHH
T ss_pred             EEEEEECCCCHHHHHHHH----HCC------CCCEEEEECCHHHHHHHHHHHHHHCCCCE-------EEEECCHHHHHHH
T ss_conf             299980358899999998----689------98289998359999999999998388544-------6784365887751


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973897134
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF  366 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF  366 (674)
                      ++...||.|..+-|-  +|-+..     .++    .|.-         +--|+..+-..|+|    ||++-+..+...++
T Consensus       104 ~~~~~~d~v~i~fpd--Pw~k~~-----h~k----rRl~---------~~~~l~~i~r~Lkp----gG~l~i~TD~~~y~  159 (213)
T 2fca_A          104 FEPGEVKRVYLNFSD--PWPKKR-----HEK----RRLT---------YSHFLKKYEEVMGK----GGSIHFKTDNRGLF  159 (213)
T ss_dssp             CCTTSCCEEEEESCC--CCCSGG-----GGG----GSTT---------SHHHHHHHHHHHTT----SCEEEEEESCHHHH
T ss_pred             CCCCCEEEEEEECCC--CCCCCC-----CHH----HHHH---------HHHHHHHHHHHCCC----CCEEEEEECCHHHH
T ss_conf             377643588871356--553100-----003----6542---------18999999983799----98899997999999


Q ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             77644326899999988494688831
Q gi|254780836|r  367 NGRAGSGESEIRRWLLENDLIEAIVA  392 (674)
Q Consensus       367 ~G~agsGEs~IRk~lie~d~ieaII~  392 (674)
                              ..+...+-+.+.....++
T Consensus       160 --------~~~~~~~~~~~~~~~~~~  177 (213)
T 2fca_A          160 --------EYSLKSFSEYGLLLTYVS  177 (213)
T ss_dssp             --------HHHHHHHHHHTCEEEEEE
T ss_pred             --------HHHHHHHHHCCCEECCCC
T ss_conf             --------999999997877211377


No 170
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661}
Probab=92.58  E-value=0.5  Score=24.78  Aligned_cols=99  Identities=10%  Similarity=-0.079  Sum_probs=60.4

Q ss_pred             CCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             7536-817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  175 EDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       175 Geff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      |++. .|..+.+ |.+.+          ...+..+|+|-.||||=+-....+.+    +.     ...+++.|++++...
T Consensus        57 ~~~i~~P~~~a~-~l~~l----------~l~~g~~VLeIGtGsGY~ta~la~l~----g~-----~g~V~~iE~~~~l~~  116 (215)
T 2yxe_A           57 GQTISAIHMVGM-MCELL----------DLKPGMKVLEIGTGCGYHAAVTAEIV----GE-----DGLVVSIERIPELAE  116 (215)
T ss_dssp             TEEECCHHHHHH-HHHHT----------TCCTTCEEEEECCTTSHHHHHHHHHH----CT-----TSEEEEEESCHHHHH
T ss_pred             CCCCCCHHHHHH-HHHHH----------CCCCCCEEEEECCCCCHHHHHHHHHH----CC-----CCEEEEEECCHHHHH
T ss_conf             861287799999-99863----------58999889982788419999999984----88-----871899952889999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             999998980887533456666823475457999866418999816856
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      .++.++.-.+....       -+..||-. ........||.|+.+...
T Consensus       117 ~a~~~l~~~~~~nv-------~~~~gd~~-~g~~~~~~fD~I~v~~~~  156 (215)
T 2yxe_A          117 KAERTLRKLGYDNV-------IVIVGDGT-LGYEPLAPYDRIYTTAAG  156 (215)
T ss_dssp             HHHHHHHHHTCTTE-------EEEESCGG-GCCGGGCCEEEEEESSBB
T ss_pred             HHHHHHHHCCCCCE-------EEEECCCC-CCCCCCCCCCEEEEECCC
T ss_conf             99999986156644-------99988865-575346886489994561


No 171
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A*
Probab=92.55  E-value=0.33  Score=25.94  Aligned_cols=76  Identities=16%  Similarity=0.081  Sum_probs=44.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf             0311766540468999999999853100533322550466667889999999898088753345666682--34754579
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSK  284 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~~  284 (674)
                      .+|+|-.||||.+-..|.+        .+   ...+||.|.++.... ++-+..-.+..        .+|  ..||.. +
T Consensus        66 k~VLDlGcGtG~ls~~aA~--------~G---a~~V~avd~s~~~~~-a~~~~~~~~~~--------~~i~~i~~d~~-~  124 (340)
T 2fyt_A           66 KVVLDVGCGTGILSMFAAK--------AG---AKKVLGVDQSEILYQ-AMDIIRLNKLE--------DTITLIKGKIE-E  124 (340)
T ss_dssp             CEEEEETCTTSHHHHHHHH--------TT---CSEEEEEESSTHHHH-HHHHHHHTTCT--------TTEEEEESCTT-T
T ss_pred             CEEEEECCCCCHHHHHHHH--------CC---CCEEEEEECCHHHHH-HHHHHHHHCCC--------CCEEEEEEEHH-H
T ss_conf             9899932774799999997--------59---988999809899999-99999974547--------75168981488-7


Q ss_pred             CCCCCCEEEEEEECCCCCC
Q ss_conf             9986641899981685676
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~  303 (674)
                      -.++..+||+|++++.+..
T Consensus       125 l~~~~~~~D~ivse~~~~~  143 (340)
T 2fyt_A          125 VHLPVEKVDVIISEWMGYF  143 (340)
T ss_dssp             SCCSCSCEEEEEECCCBTT
T ss_pred             CCCCCCCCCEEEEECCCEE
T ss_conf             6476466768999632100


No 172
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=92.53  E-value=0.03  Score=32.72  Aligned_cols=97  Identities=15%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf             031176654046899999999985310053332255046666788999999989808875334566668234754579-9
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D  285 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d  285 (674)
                      .+|+|-.||+|.++-..    .+.    +    ..++|-|+++.....|+.+.     +          ...+|.+.. .
T Consensus        43 ~~vLDiGCG~G~~~~~l----~~~----g----~~v~GiD~s~~~i~~a~~~~-----~----------~~~~~~~~~~~   95 (240)
T 3dli_A           43 RRVLDIGCGRGEFLELC----KEE----G----IESIGVDINEDMIKFCEGKF-----N----------VVKSDAIEYLK   95 (240)
T ss_dssp             SCEEEETCTTTHHHHHH----HHH----T----CCEEEECSCHHHHHHHHTTS-----E----------EECSCHHHHHH
T ss_pred             CEEEEECCCCCHHHHHH----HHC----C----CEEEEEECCHHHHHHHHHHC-----C----------CCHHHHHHHHC
T ss_conf             96999738785999999----977----9----95999967707878876511-----1----------00100666402


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             98664189998168567653100011123442266665357777477065-99999999961466578807999738
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~-~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                      .+++.+||+|++.=-+-             +           +|+   .+ .-+++.+...|+|    ||++.+..|
T Consensus        96 ~~~~~~fD~V~~~~vle-------------H-----------~~~---~~~~~~l~e~~r~Lkp----gG~li~~~p  141 (240)
T 3dli_A           96 SLPDKYLDGVMISHFVE-------------H-----------LDP---ERLFELLSLCYSKMKY----SSYIVIESP  141 (240)
T ss_dssp             TSCTTCBSEEEEESCGG-------------G-----------SCG---GGHHHHHHHHHHHBCT----TCCEEEEEE
T ss_pred             CCCCCCCCEEEEECEEE-------------E-----------CCH---HHHHHHHHHHHHHCCC----CCEEEEEEC
T ss_conf             35434765887621012-------------0-----------682---7899999999986084----978999977


No 173
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=92.53  E-value=0.5  Score=24.74  Aligned_cols=155  Identities=11%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-.||+|..+....+    .++.      ..+-++++ +....+++.+.--.+....      -....||-+..+.
T Consensus       181 ~~vLDiG~G~G~~~~~la~----~~p~------~~~~~~d~-~~~~~~~~~~~~~~~~~~r------v~~~~~d~~~~~~  243 (363)
T 3dp7_A          181 KRLLDIGGNTGKWATQCVQ----YNKE------VEVTIVDL-PQQLEMMRKQTAGLSGSER------IHGHGANLLDRDV  243 (363)
T ss_dssp             SEEEEESCTTCHHHHHHHH----HSTT------CEEEEEEC-HHHHHHHHHHHTTCTTGGG------EEEEECCCCSSSC
T ss_pred             CEEEEECCCCHHHHHHHHH----HCCC------EEEEEECC-CHHHHHHHHHHHHCCCCCC------EEEEECCCCCCCC
T ss_conf             9899979995299999998----6897------39999757-1167999988765278772------6999733335667


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC---CCC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973---897
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL---SSS  363 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~---ngs  363 (674)
                      .....||+++..--+. .|..+.                         -..+++++...|+|    ||++.|+-   +..
T Consensus       244 ~~~~~~d~~~~~~~l~-~~~~~~-------------------------~~~iL~~i~~~L~p----gG~lli~d~~~~~~  293 (363)
T 3dp7_A          244 PFPTGFDAVWMSQFLD-CFSEEE-------------------------VISILTRVAQSIGK----DSKVYIMETLWDRQ  293 (363)
T ss_dssp             CCCCCCSEEEEESCST-TSCHHH-------------------------HHHHHHHHHHHCCT----TCEEEEEECCTTSC
T ss_pred             CCCCCCEEEEEECHHH-CCCHHH-------------------------HHHHHHHHHHHCCC----CCEEEEEEECCCCC
T ss_conf             8999844897710120-256144-------------------------54579999966888----82899998315898


Q ss_pred             C-----------------CCCCCCC-CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCC
Q ss_conf             1-----------------3477644-3268999999884946888317677655788616999994688
Q gi|254780836|r  364 P-----------------LFNGRAG-SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK  414 (674)
Q Consensus       364 ~-----------------LF~G~ag-sGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K  414 (674)
                      +                 +..|+.. -.+.+++++|-+.++  .|+..    ..++|...+|+...++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~aGF--~v~~~----~~~~~~~~~~l~~r~k~  356 (363)
T 3dp7_A          294 RYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL--EVEEI----QDNIGLGHSILQCRLKE  356 (363)
T ss_dssp             SSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE--EESCC----CCCBTTTBEEEEEEEC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC--EEEEE----EECCCCCEEEEEEEECC
T ss_conf             87624689999889999862589877899999999997799--79999----94699980899999877


No 174
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=92.13  E-value=0.56  Score=24.43  Aligned_cols=73  Identities=10%  Similarity=0.048  Sum_probs=45.2

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++....+    .+++      +...|+|+ |.....++.+.--.|....      -.+..||-+.+ 
T Consensus       191 ~~~vlDiG~G~G~~~~~l~~----~~p~------~~~~~~Dl-p~~~~~a~~~~~~~~l~~r------v~~~~gD~~~~-  252 (359)
T 1x19_A          191 VKKMIDVGGGIGDISAAMLK----HFPE------LDSTILNL-PGAIDLVNENAAEKGVADR------MRGIAVDIYKE-  252 (359)
T ss_dssp             CCEEEEESCTTCHHHHHHHH----HCTT------CEEEEEEC-GGGHHHHHHHHHHTTCTTT------EEEEECCTTTS-
T ss_pred             CCEEEECCCCCCHHHHHHHH----HCCC------EEEEEECC-HHHHHHHHHHHHHCCCCCC------CEEEECCHHHC-
T ss_conf             87799767989799999998----3992------28998166-8889999986675077634------52783457763-


Q ss_pred             CCCCCEEEEEEEC
Q ss_conf             9866418999816
Q gi|254780836|r  286 LFTGKRFHYCLSN  298 (674)
Q Consensus       286 ~~~~~kFD~vlaN  298 (674)
                      .++  .||+|+..
T Consensus       253 ~~p--~~D~v~~~  263 (359)
T 1x19_A          253 SYP--EADAVLFC  263 (359)
T ss_dssp             CCC--CCSEEEEE
T ss_pred             CCC--CCCEEEEE
T ss_conf             578--76504556


No 175
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=91.66  E-value=0.051  Score=31.21  Aligned_cols=89  Identities=16%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC
Q ss_conf             7764031176654046899999999985310053332255046666788999999989808875334566668--23475
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGS  280 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N--I~~Gd  280 (674)
                      ++...+|+|-|||.|.-=.....    .    +    ..+.+.|.||..+++..-++---..+.........|  +..||
T Consensus        86 ~~~~~~VlDaTaGlG~Da~vlA~----~----G----~~V~~iEr~p~l~~ll~d~l~ra~~~~~~~~~~~~ri~l~~~D  153 (258)
T 2oyr_A           86 GDYLPDVVDATAGLGRDAFVLAS----V----G----CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             TTBCCCEEETTCTTCHHHHHHHH----H----T----CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             CCCCCEEEECCCCCHHHHHHHHH----C----C----CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCC
T ss_conf             78998489878774299999997----7----9----9689984799999999999999872737789986323787387


Q ss_pred             CCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             45799986641899981685676
Q gi|254780836|r  281 TLSKDLFTGKRFHYCLSNPPFGK  303 (674)
Q Consensus       281 TL~~d~~~~~kFD~vlaNPPFg~  303 (674)
                      ++.-=.-....||+|.-.|+|-.
T Consensus       154 s~~~L~~~~~~~DvIYlDPMFp~  176 (258)
T 2oyr_A          154 SLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HHHHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHHHHCCCCCCEEEECCCCCC
T ss_conf             99998626766887998999986


No 176
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=90.68  E-value=0.16  Score=28.05  Aligned_cols=45  Identities=11%  Similarity=0.108  Sum_probs=33.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             0311766540468999999999853100533322550466667889999999898
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI  261 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli  261 (674)
                      ..|+|-.||||.+.+...+..    +      ...++|.|+++..-++|+-|.--
T Consensus        48 ~~vLDiGCG~G~~~i~la~~~----~------~~~v~GiDis~~~i~~A~~n~~~   92 (292)
T 3g07_A           48 RDVLDLGCNVGHLTLSIACKW----G------PSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             SEEEEESCTTCHHHHHHHHHT----C------CSEEEEEESCHHHHHHHHHTC--
T ss_pred             CEEEEEECCCCHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHHH
T ss_conf             959998579789999999878----9------98899970988999999999998


No 177
>3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A
Probab=90.47  E-value=0.65  Score=24.01  Aligned_cols=73  Identities=14%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .+|.|-.||||.+-..|.+        .+   ...+|+.|.++. ..+|+....-.|....      -.+..|+.-  +.
T Consensus        48 ~~VLDiGcG~G~ls~~aa~--------~G---a~~V~~~e~s~~-~~~~~~~~~~n~~~~~------I~~i~~~~~--~l  107 (341)
T 3b3f_A           48 KIVLDVGCGSGILSFFAAQ--------AG---ARKIYAVEASTM-AQHAEVLVKSNNLTDR------IVVIPGKVE--EV  107 (341)
T ss_dssp             CEEEEESCTTSHHHHHHHH--------TT---CSEEEEEECSTH-HHHHHHHHHHTTCTTT------EEEEESCTT--TC
T ss_pred             CEEEEECCCCCHHHHHHHH--------CC---CCEEEEEECCHH-HHHHHHHHHHCCCCCC------CEEEEEEHH--HC
T ss_conf             9899966685399999997--------69---998999979099-9999999998599864------007960366--52


Q ss_pred             CCCCEEEEEEECC
Q ss_conf             8664189998168
Q gi|254780836|r  287 FTGKRFHYCLSNP  299 (674)
Q Consensus       287 ~~~~kFD~vlaNP  299 (674)
                      -...+||+|++.+
T Consensus       108 ~l~~~~Dvivse~  120 (341)
T 3b3f_A          108 SLPEQVDIIISEP  120 (341)
T ss_dssp             CCSSCEEEEECCC
T ss_pred             CCCCCCCEEEEEC
T ss_conf             5676633798750


No 178
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
Probab=89.88  E-value=0.33  Score=25.94  Aligned_cols=47  Identities=15%  Similarity=-0.011  Sum_probs=33.7

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             403117665404689999999998531005333225504666678899999998980
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR  262 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~  262 (674)
                      .+.|.|-.||||.++...    .+..+      ...+.|.|++++..+.|+...--+
T Consensus        25 ~~~vLDvGcG~G~~~~~l----a~~~p------~~~vvGvD~s~~~l~~a~~~~~~~   71 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKL----AINDQ------NTFYIGIDPVKENLFDISKKIIKK   71 (225)
T ss_dssp             SEEEEEETCTTSHHHHHH----HHTCT------TEEEEEECSCCGGGHHHHHHHTSC
T ss_pred             CCEEEEEEEECCHHHHHH----HHHCC------CCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             998999227673999999----98689------978999867889999999888875


No 179
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus}
Probab=89.77  E-value=0.75  Score=23.60  Aligned_cols=72  Identities=15%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf             0311766540468999999999853100533322550466667889999999898088753345666682--34754579
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSK  284 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~~  284 (674)
                      ..|.|-.||||-+-.-|.+        ++.   ..+|+.|.++ ....|+...--.|+.        .+|  ..|+.-  
T Consensus       160 kvVLDvGcGtGiLs~~AA~--------aGA---~kV~avE~S~-~a~~A~~~v~~Ngl~--------d~I~vi~g~~e--  217 (480)
T 3b3j_A          160 KIVLDVGCGSGILSFFAAQ--------AGA---RKIYAVEAST-MAQHAEVLVKSNNLT--------DRIVVIPGKVE--  217 (480)
T ss_dssp             CEEEEESCSTTHHHHHHHH--------TTC---SEEEEEECHH-HHHHHHHHHHHTTCT--------TTEEEEESCTT--
T ss_pred             CEEEEECCCCCHHHHHHHH--------CCC---CEEEEECCHH-HHHHHHHHHHHCCCC--------CCEEEEECCHH--
T ss_conf             9899968883699999998--------599---8899990959-999999999974998--------61689975276--


Q ss_pred             CCCCCCEEEEEEECCC
Q ss_conf             9986641899981685
Q gi|254780836|r  285 DLFTGKRFHYCLSNPP  300 (674)
Q Consensus       285 d~~~~~kFD~vlaNPP  300 (674)
                      +--..++||+|++.+-
T Consensus       218 ~l~lpe~vDvIVSE~m  233 (480)
T 3b3j_A          218 EVSLPEQVDIIISEPM  233 (480)
T ss_dssp             TCCCSSCEEEEECCCC
T ss_pred             HCCCCCCCCEEEEECC
T ss_conf             5676766678999832


No 180
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=89.04  E-value=1  Score=22.78  Aligned_cols=136  Identities=21%  Similarity=0.186  Sum_probs=72.5

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH--HHHHHHHHCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999--9999898088753345666682--3475457
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV--CVAGMLIRRLESDPRRDLSKNI--QQGSTLS  283 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI--ak~nMli~g~~~d~~~~~~~NI--~~GdTL~  283 (674)
                      .|.|--||+|.+|+..+    ..      .....+.|.|+.+.....  .++..+-+...     .+..||  ..||...
T Consensus        49 ~iLeIGcG~G~~l~~lA----~~------~P~~~~iGiei~~~~~~~~~~~~~~~~~~~~-----~~l~Nv~~~~~da~~  113 (235)
T 3ckk_A           49 EFADIGCGYGGLLVELS----PL------FPDTLILGLEIRVKVSDYVQDRIRALRAAPA-----GGFQNIACLRSNAMK  113 (235)
T ss_dssp             EEEEETCTTCHHHHHHG----GG------STTSEEEEEESCHHHHHHHHHHHHHHHHSTT-----CCCTTEEEEECCTTT
T ss_pred             EEEEEECCCCHHHHHHH----HH------CCCCCEEEEEECHHHHHHHHHHHHHHHHHHH-----CCCCEEEEEECCHHH
T ss_conf             79998226869999999----86------8687289886135899999989999999987-----088569998544487


Q ss_pred             --CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             --999866418999816856765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  284 --KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       284 --~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                        .+.++...||.|..|-|=  +|-+..     .++.    |.-         +--|+..+...|++    ||++-+..+
T Consensus       114 ~l~~~~~~~s~d~v~i~fPD--PWpK~~-----h~kr----Rl~---------~~~fl~~~~r~Lkp----gG~l~i~TD  169 (235)
T 3ckk_A          114 HLPNFFYKGQLTKMFFLFPD--PHFKRT-----KHKW----RII---------SPTLLAEYAYVLRV----GGLVYTITD  169 (235)
T ss_dssp             CHHHHCCTTCEEEEEEESCC----------------------CC---------CHHHHHHHHHHEEE----EEEEEEEES
T ss_pred             HHHHHHCCCCCHHCEEECCC--CCCCHH-----HHHH----HHC---------CHHHHHHHHHHCCC----CCEEEEEEC
T ss_conf             76665135540010576689--873133-----3214----321---------57799999985688----988999989


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             97134776443268999999884946888
Q gi|254780836|r  362 SSPLFNGRAGSGESEIRRWLLENDLIEAI  390 (674)
Q Consensus       362 gs~LF~G~agsGEs~IRk~lie~d~ieaI  390 (674)
                      ...+|        ..+...+-+....+.+
T Consensus       170 ~~~y~--------~~~~~~~~~~~~f~~~  190 (235)
T 3ckk_A          170 VLELH--------DWMCTHFEEHPLFERV  190 (235)
T ss_dssp             CHHHH--------HHHHHHHHTSTTEEEE
T ss_pred             CHHHH--------HHHHHHHHHCCCEECC
T ss_conf             98999--------9999999859361125


No 181
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=88.60  E-value=1.1  Score=22.46  Aligned_cols=141  Identities=18%  Similarity=0.202  Sum_probs=77.1

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++....    +.+++      +...|+++ |.....++.+.--.|....      -.+..+|-+. +
T Consensus       183 ~~~vlDvG~G~G~~~~~l~----~~~P~------~~~~~~D~-~~~~~~a~~~~~~~~~~~~------i~~~~~d~~~-~  244 (374)
T 1qzz_A          183 VRHVLDVGGGNGGMLAAIA----LRAPH------LRGTLVEL-AGPAERARRRFADAGLADR------VTVAEGDFFK-P  244 (374)
T ss_dssp             CCEEEEETCTTSHHHHHHH----HHCTT------CEEEEEEC-HHHHHHHHHHHHHTTCTTT------EEEEECCTTS-C
T ss_pred             CCEEEEECCCCCHHHHHHH----HHCCC------EEEEEEEC-HHHHHHHHHHHHHCCCCCE------EEEEECHHHH-C
T ss_conf             8789997998878899999----97897------28999607-8889999999885588622------7887041443-1


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC----
Q ss_conf             9866418999816856765310001112344226666535777747706599999999961466578807999738----
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS----  361 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n----  361 (674)
                      . + ..||+|+.+=-+- .|..+.                         -..+|+++...|+|    |||+.|+-.    
T Consensus       245 ~-p-~~~D~v~~~~vlh-~~~d~~-------------------------~~~iL~~~~~~L~p----gG~lli~d~~~~~  292 (374)
T 1qzz_A          245 L-P-VTADVVLLSFVLL-NWSDED-------------------------ALTILRGCVRALEP----GGRLLVLDRADVE  292 (374)
T ss_dssp             C-S-CCEEEEEEESCGG-GSCHHH-------------------------HHHHHHHHHHHEEE----EEEEEEEECCH--
T ss_pred             C-C-CCCCEEEEEEEEE-CCCHHH-------------------------HHHHHHHHHHHCCC----CCEEEEEEECCCC
T ss_conf             8-9-8774899842242-389899-------------------------99999999986298----9889999802479


Q ss_pred             --CC-CC-----------CCCCCCCCHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf             --97-13-----------477644326899999988494-6888317677
Q gi|254780836|r  362 --SS-PL-----------FNGRAGSGESEIRRWLLENDL-IEAIVALPTD  396 (674)
Q Consensus       362 --gs-~L-----------F~G~agsGEs~IRk~lie~d~-ieaII~LP~~  396 (674)
                        +. +.           ++|+.--.+.+.|+++-+-++ +..+...|..
T Consensus       293 ~~~~~~~~~~~~dl~m~~~~~G~~rt~~e~~~ll~~AGf~~~~~~~~~~~  342 (374)
T 1qzz_A          293 GDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGST  342 (374)
T ss_dssp             -----HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             98732678999889999857991689999999999869967699967987


No 182
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=88.53  E-value=1.1  Score=22.43  Aligned_cols=105  Identities=17%  Similarity=0.066  Sum_probs=53.6

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL  282 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL  282 (674)
                      ..++..|+|--||.||+...+.+.       .+    ..+-|..+++.-.+.|+.-..-.|...      ...+..+|- 
T Consensus        62 l~~G~~VLDiGCG~G~~a~~~A~~-------~g----~~v~git~s~~q~~~a~~~~~~~~~~~------~~~~~~~d~-  123 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEK-------YD----VNVVGLTLSKNQANHVQQLVANSENLR------SKRVLLAGW-  123 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHH-------HC----CEEEEEESCHHHHHHHHHHHHTCCCCS------CEEEEESCG-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHH-------CC----CCEEEEECCHHHHHHHHHHHHHHCCCC------HHHHHHHHH-
T ss_conf             999998999688525999999996-------79----846999689999999999987614540------157887436-


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             7999866418999816856765310001112344226666535777747706599999999961466578807999
Q gi|254780836|r  283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI  358 (674)
Q Consensus       283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI  358 (674)
                         .....+||.|+|-=-|             ||           +|....  -.|++.+-.-|+|    |||++|
T Consensus       124 ---~~~~~~fD~i~si~~~-------------eh-----------~~~~~~--~~~~~~~~r~Lkp----gG~~~i  166 (287)
T 1kpg_A          124 ---EQFDEPVDRIVSIGAF-------------EH-----------FGHERY--DAFFSLAHRLLPA----DGVMLL  166 (287)
T ss_dssp             ---GGCCCCCSEEEEESCG-------------GG-----------TCTTTH--HHHHHHHHHHSCT----TCEEEE
T ss_pred             ---HHCCCCCCCEEEEHHH-------------HH-----------CCHHHH--HHHHHHHHHHCCC----CCEEEE
T ss_conf             ---6413776405553227-------------75-----------074779--9999999974699----972999


No 183
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1}
Probab=87.52  E-value=1.3  Score=22.02  Aligned_cols=140  Identities=16%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++....+    .+++      ++..+.++ |+....|+.+.--.|....      -....||-+. +
T Consensus       168 ~~~vlDvG~G~G~~~~~l~~----~~P~------l~~~~~Dl-p~~~~~a~~~~~~~~~~~r------i~~~~gd~~~-~  229 (334)
T 2ip2_A          168 GRSFVDVGGGSGELTKAILQ----AEPS------ARGVMLDR-EGSLGVARDNLSSLLAGER------VSLVGGDMLQ-E  229 (334)
T ss_dssp             TCEEEEETCTTCHHHHHHHH----HCTT------CEEEEEEC-TTCTHHHHHHTHHHHHTTS------EEEEESCTTT-C
T ss_pred             CCEEEECCCCCCHHHHHHHH----HCCC------EEEEEECC-CCHHHHHHHHHHHCCCCCE------EEEECCCHHH-C
T ss_conf             88673038987688888898----6996------49998228-5112899876765077770------6997177654-3


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---C
Q ss_conf             9866418999816856765310001112344226666535777747706599999999961466578807999738---9
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---S  362 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---g  362 (674)
                      . + ..||+|+..-=+- +|..++.                         ...|+++-..|+|    ||++.|+-.   .
T Consensus       230 ~-p-~~~D~v~~~~vlh-~~~d~~~-------------------------~~iL~~~~~aL~p----gG~lli~e~~~~~  277 (334)
T 2ip2_A          230 V-P-SNGDIYLLSRIIG-DLDEAAS-------------------------LRLLGNCREAMAG----DGRVVVIERTISA  277 (334)
T ss_dssp             C-C-SSCSEEEEESCGG-GCCHHHH-------------------------HHHHHHHHHHSCT----TCEEEEEECCBCS
T ss_pred             C-C-CCCCEEEEEEEEC-CCCHHHH-------------------------HHHHHHHHHHHCC----CCEEEEEEEECCC
T ss_conf             8-8-7570899962111-5897899-------------------------9999999986089----9789999850489


Q ss_pred             ---CC---CC-------CCCCCCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf             ---71---34-------77644326899999988494-688831767
Q gi|254780836|r  363 ---SP---LF-------NGRAGSGESEIRRWLLENDL-IEAIVALPT  395 (674)
Q Consensus       363 ---s~---LF-------~G~agsGEs~IRk~lie~d~-ieaII~LP~  395 (674)
                         ++   +|       .|+.--.+.++++++-+.++ +.-|+.+|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~AGf~~~~~~~~p~  324 (334)
T 2ip2_A          278 SEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPM  324 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEETT
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             99864889999999985799789999999999986993679998599


No 184
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta- aspartate methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum 3D7}
Probab=87.44  E-value=1.3  Score=22.00  Aligned_cols=109  Identities=13%  Similarity=-0.008  Sum_probs=57.8

Q ss_pred             CCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             75368-17999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  175 EDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       175 GeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
                      |++-. |.-+.+++-.|+ .    .+  .|  ..+|+|--||||= ++...-.+..    .-......++|.|++++.+.
T Consensus        58 ~~tis~P~~~A~~l~~L~-~----~l--~~--g~~VLeIGtGsGY-~ta~la~~~~----~l~~~~g~V~~iE~~~~l~~  123 (227)
T 2pbf_A           58 GVTISAPHMHALSLKRLI-N----VL--KP--GSRAIDVGSGSGY-LTVCMAIKMN----VLENKNSYVIGLERVKDLVN  123 (227)
T ss_dssp             TEEECCHHHHHHHHHHHT-T----TS--CT--TCEEEEESCTTSH-HHHHHHHHTT----TTTCTTCEEEEEESCHHHHH
T ss_pred             CCEECHHHHHHHHHHHHH-H----HC--CC--CCEEEEECCCCCH-HHHHHHHHHH----HHCCCCCEEEEEEECHHHHH
T ss_conf             978557899999999878-6----47--99--8869983799739-9999999976----52245653899970599999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--C-CCCEEEEEEECC
Q ss_conf             999998980887533456666823475457999--8-664189998168
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--F-TGKRFHYCLSNP  299 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~--~-~~~kFD~vlaNP  299 (674)
                      .|+-|+--.+...  .....-.+..||.+.-..  . ....||.|+..-
T Consensus       124 ~a~~~l~~~~~~~--~~~~nv~~~~gd~~~~~~~g~~~~~pfD~I~v~~  170 (227)
T 2pbf_A          124 FSLENIKRDKPEL--LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGA  170 (227)
T ss_dssp             HHHHHHHHHCGGG--GSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECS
T ss_pred             HHHHHHHHCCHHH--HCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             9999998510444--1557589997773201255787678824799940


No 185
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=87.34  E-value=1.3  Score=21.96  Aligned_cols=42  Identities=14%  Similarity=0.065  Sum_probs=30.4

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             403117665404689999999998531005333225504666678899999998
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM  259 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM  259 (674)
                      ..+|.|..||+|.+.....+    ..        ..+.|.|+++..-++|+.+.
T Consensus        57 ~~~vLDvGCG~G~~~~~la~----~g--------~~v~gvD~s~~~i~~Ar~~~   98 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQ----FF--------PRVIGLDVSKSALEIAAKEN   98 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHH----HS--------SCEEEEESCHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCHHHHHHHC----CC--------CEEEEEECCHHHHHHHHHHC
T ss_conf             98589975879787999763----78--------45998509999999999867


No 186
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=83.23  E-value=2.1  Score=20.71  Aligned_cols=108  Identities=17%  Similarity=0.066  Sum_probs=63.7

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             4031176654046899999999985310053332255046666788999999989808875334566668234754579-
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-  284 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-  284 (674)
                      ...|.+--||+|.+.-    ++....+.      ..+-+.|+++....+|+..+-+..       +..-.|..||-..- 
T Consensus        90 p~rvL~lG~G~g~l~r----~l~~~~P~------~~v~~VEidp~vi~~ar~~f~~~~-------~~rv~v~~~Da~~~l  152 (317)
T 3gjy_A           90 KLRITHLGGGACTMAR----YFADVYPQ------SRNTVVELDAELARLSREWFDIPR-------APRVKIRVDDARMVA  152 (317)
T ss_dssp             GCEEEEESCGGGHHHH----HHHHHSTT------CEEEEEESCHHHHHHHHHHSCCCC-------TTTEEEEESCHHHHH
T ss_pred             CCEEEEECCCHHHHHH----HHHHHCCC------CEEEEEECCHHHHHHHHHHCCCCC-------CCCEEEEECCHHHHH
T ss_conf             8779998996899999----99997899------869999798899999998679988-------997689978499999


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99866418999816856765310001112344226666535777747706599999999961466578807999
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI  358 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI  358 (674)
                      ......+||+|+.+..-+..                       .|.. -..--|++.+-..|++    ||++++
T Consensus       153 ~~~~~~~~D~Iv~D~f~~~~-----------------------~p~~-l~t~ef~~~~~~~L~p----gG~lvv  198 (317)
T 3gjy_A          153 ESFTPASRDVIIRDVFAGAI-----------------------TPQN-FTTVEFFEHCHRGLAP----GGLYVA  198 (317)
T ss_dssp             HTCCTTCEEEEEECCSTTSC-----------------------CCGG-GSBHHHHHHHHHHEEE----EEEEEE
T ss_pred             HHCCCCCCCEEEEECCCCCC-----------------------CCCC-CCCHHHHHHHHHHCCC----CCEEEE
T ss_conf             75055788779995788766-----------------------7632-1679999999974189----838999


No 187
>1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52
Probab=81.98  E-value=2.3  Score=20.41  Aligned_cols=111  Identities=19%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHCC--CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH
Q ss_conf             6575368179999999973178401101--38776403117665404689999999998531005333225504666678
Q gi|254780836|r  173 GAEDFMTPRDVVHLATALLLDPDDALFK--ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE  250 (674)
Q Consensus       173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~--~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~  250 (674)
                      ..|+|||-.+|..+..++|..-......  ..|.. .+|...-+|+|.|.....+.++.. +.  ....+.+|-.|.++.
T Consensus        47 ~~GDF~TSpeis~~FG~~ia~~~~~~~~~~~~p~~-~~ivE~GaG~G~L~~DIl~~~~~~-p~--~~~~~~~~~vE~s~~  122 (387)
T 1zkd_A           47 REGDFTTSPEISQMFGELLGLWSASVWKAADEPQT-LRLIEIGPGRGTMMADALRALRVL-PI--LYQSLSVHLVEINPV  122 (387)
T ss_dssp             ----CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS-EEEEEECCTTSHHHHHHHHHHTTS-HH--HHTTEEEEEECCCHH
T ss_pred             CCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHHC-HH--HHHCCEEEEEECCHH
T ss_conf             99874687405799999999999999997599977-169996798207899899998648-15--441345899936878


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             899999998980887533456666823475457999866418999816856
Q gi|254780836|r  251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      .-+.-+..  +.+         ..+|.+-++|.+-.  . ..-+|+||-=|
T Consensus       123 Lr~~Q~~~--L~~---------~~~i~~~~~l~~~~--~-~~giiiANE~f  159 (387)
T 1zkd_A          123 LRQKQQTL--LAG---------IRNIHWHDSFEDVP--E-GPAVILANEYF  159 (387)
T ss_dssp             HHHHHHHH--STT---------CSSEEEESSGGGSC--C-SSEEEEEESSG
T ss_pred             HHHHHHHH--HCC---------CCCEEEECCHHHCC--C-CCCEEEECCCC
T ss_conf             88999987--247---------77404741421177--8-88147612235


No 188
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=79.06  E-value=2.9  Score=19.79  Aligned_cols=132  Identities=15%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++....    +..++      ++..++++ |+....++.+.--+|....      -....||-+. +
T Consensus       170 ~~~vlDvGgG~G~~~~~l~----~~~P~------~~~~~~Dl-p~~~~~a~~~~~~~~~~~r------i~~~~~d~~~-~  231 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALL----TAHED------LSGTVLDL-QGPASAAHRRFLDTGLSGR------AQVVVGSFFD-P  231 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHH----HHCTT------CEEEEEEC-HHHHHHHHHHHHHTTCTTT------EEEEECCTTS-C
T ss_pred             CCEEEECCCCCCHHHHHHH----HHCCC------CEEEEEEC-HHHHHHHHHHHHHCCCCCC------EEEECCCCCC-C
T ss_conf             7478752899769999999----97899------86999978-4389999987564167874------5773375123-5


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC---C
Q ss_conf             9866418999816856765310001112344226666535777747706599999999961466578807999738---9
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS---S  362 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n---g  362 (674)
                      . + ..+|.++..=-+- +|..+                         .....|+++...|+|    |||+.|+-+   .
T Consensus       232 ~-p-~~~D~~~~~~vlh-~~~d~-------------------------~~~~iL~~~~~~L~p----gG~lli~d~~~~~  279 (332)
T 3i53_A          232 L-P-AGAGGYVLSAVLH-DWDDL-------------------------SAVAILRRCAEAAGS----GGVVLVIEAVAGD  279 (332)
T ss_dssp             C-C-CSCSEEEEESCGG-GSCHH-------------------------HHHHHHHHHHHHHTT----TCEEEEEECCCC-
T ss_pred             C-C-CCCCEEEEECCCC-CCCHH-------------------------HHHHHHHHHHHHCCC----CCEEEEEECCCCC
T ss_conf             8-9-9873899721456-78989-------------------------999999999997599----9889999616799


Q ss_pred             ---CCC-------CCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             ---713-------4776443268999999884946
Q gi|254780836|r  363 ---SPL-------FNGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       363 ---s~L-------F~G~agsGEs~IRk~lie~d~i  387 (674)
                         ++.       ..|+.--.+.++++++-+-++-
T Consensus       280 ~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~aGf~  314 (332)
T 3i53_A          280 EHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLA  314 (332)
T ss_dssp             --CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEE
T ss_pred             CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCE
T ss_conf             86420445999986599378999999999987996


No 189
>2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A*
Probab=77.00  E-value=3.3  Score=19.40  Aligned_cols=146  Identities=10%  Similarity=0.018  Sum_probs=71.0

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      +|+=---|.||.+-+.       ....   ...++-..|++++...+|+--+-.-.   ....+..-++..+|-..-=.-
T Consensus       119 ~VLIiGgGdG~~~rel-------lk~~---~~~~v~~VEID~~Vv~~ak~~f~~~~---~~~~dprv~v~~~Da~~~l~~  185 (321)
T 2pt6_A          119 NVLVVGGGDGGIIREL-------CKYK---SVENIDICEIDETVIEVSKIYFKNIS---CGYEDKRVNVFIEDASKFLEN  185 (321)
T ss_dssp             EEEEEECTTCHHHHHH-------TTCT---TCCEEEEEESCHHHHHHHHHHCTTTS---GGGGSTTEEEEESCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHH-------HHCC---CCCCEEEECCCHHHHHHHHHHHHHHC---CCCCCCCEEEEECHHHHHHHH
T ss_conf             6999848953999999-------9729---96414785257999999998626623---443687626996169999873


Q ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf             66418999816856765310001112344226666535777747706599999999961466578807999738971347
Q gi|254780836|r  288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN  367 (674)
Q Consensus       288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~  367 (674)
                      ...+||+|+..++-..  ....        . ..             +--|.+.+-..|++.    |.+ ++-.+|+.+.
T Consensus       186 ~~~~yDvIi~D~~dp~--~~~~--------~-L~-------------t~eFy~~~~~~L~~~----Gi~-v~q~~s~~~~  236 (321)
T 2pt6_A          186 VTNTYDVIIVDSSDPI--GPAE--------T-LF-------------NQNFYEKIYNALKPN----GYC-VAQCESLWIH  236 (321)
T ss_dssp             CCSCEEEEEEECCCSS--SGGG--------G-GS-------------SHHHHHHHHHHEEEE----EEE-EEEECCTTTC
T ss_pred             CCCCCCEEEEECCCCC--CCHH--------H-HC-------------CHHHHHHHHHHCCCC----CEE-EEECCCHHHC
T ss_conf             6676677999379988--7346--------6-54-------------699999999974899----499-9916871206


Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf             764432689999998849468883176776557886169
Q gi|254780836|r  368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY  406 (674)
Q Consensus       368 G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~  406 (674)
                      -..   -..+.+.+-+.        -|.-.+|.+.||||
T Consensus       237 ~~~---~~~i~~~l~~v--------F~~v~~y~~~iPty  264 (321)
T 2pt6_A          237 VGT---IKNMIGYAKKL--------FKKVEYANISIPTY  264 (321)
T ss_dssp             HHH---HHHHHHHHHTT--------CSEEEEEEEECTTS
T ss_pred             HHH---HHHHHHHHHHH--------CCCEEEEEEEECCC
T ss_conf             888---77667788742--------89646898880464


No 190
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=76.65  E-value=3.3  Score=19.44  Aligned_cols=82  Identities=12%  Similarity=0.035  Sum_probs=45.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      +.|+=-.-|.||.+-+.       .+...   ..++-..|++++...+|+.-+-.  . .....+..-+|..+|-..-=.
T Consensus       110 k~VLIiGgGdG~~~rel-------lk~~~---v~~v~~VEID~~Vi~~a~~~~~~--~-~~~~~dprv~i~~~Da~~~l~  176 (314)
T 2b2c_A          110 KRVLIIGGGDGGILREV-------LKHES---VEKVTMCEIDEMVIDVAKKFLPG--M-SCGFSHPKLDLFCGDGFEFLK  176 (314)
T ss_dssp             CEEEEESCTTSHHHHHH-------TTCTT---CCEEEEECSCHHHHHHHHHHCTT--T-SGGGGCTTEEEECSCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHH-------HHCCC---CCEEEEEEECHHHHHHHHHHCHH--H-CCCCCCCCEEEEECHHHHHHH
T ss_conf             87999889846999999-------97499---54589996088999999763633--2-254566652799710899974


Q ss_pred             CCCCEEEEEEECCCC
Q ss_conf             866418999816856
Q gi|254780836|r  287 FTGKRFHYCLSNPPF  301 (674)
Q Consensus       287 ~~~~kFD~vlaNPPF  301 (674)
                      ....+||+|+..++-
T Consensus       177 ~~~~~yDvII~D~~d  191 (314)
T 2b2c_A          177 NHKNEFDVIITDSSD  191 (314)
T ss_dssp             HCTTCEEEEEECCC-
T ss_pred             CCCCCCCEEEEECCC
T ss_conf             178888889996899


No 191
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=75.19  E-value=3.7  Score=19.09  Aligned_cols=119  Identities=12%  Similarity=0.024  Sum_probs=64.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             031176654046899999999985310053332255046666788999999989-8088753345666682347545799
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ++|+=---|.||.+-+..+|       ..   ...+-..|+++....+|+.-+- +.+.   ...+..-+|..+|...-=
T Consensus        85 ~~VLiiGgG~G~~~~e~lk~-------~~---v~~v~~VEiD~~Vi~~a~~~~~~~~~~---~~~dprv~i~~~Da~~~l  151 (294)
T 3adn_A           85 KHVLIIGGGDGAMLREVTRH-------KN---VESITMVEIDAGVVSFCRQYLPNHNAG---SYDDPRFKLVIDDGVNFV  151 (294)
T ss_dssp             CEEEEESCTTCHHHHHHHTC-------TT---CCEEEEECSCTTHHHHHHHHCHHHHSS---CTTCTTCCEECSCSCC--
T ss_pred             CEEEEECCCCHHHHHHHHHH-------CC---CCEEEEECCCHHHHHHHHHCCCCCCCC---CCCCCCEEEEECHHHHHH
T ss_conf             66999889837999999981-------99---663899717899999987448411355---467885799951689998


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf             98664189998168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL  365 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L  365 (674)
                      .-..++||+|+..++-.  +..                      +.+=-+--|.+.+-..|++.    |.+ ++-.+|+.
T Consensus       152 ~~~~~~yDvIi~D~~dp--~~~----------------------~~~L~t~eFy~~~~~~L~p~----Gv~-v~q~~s~~  202 (294)
T 3adn_A          152 NQTSQTFDVIISDCTDP--IGP----------------------GESLFTSAFYEGCKRCLNPG----GIF-VAQNGVCF  202 (294)
T ss_dssp             -CCCCCEEEEEECC----------------------------------CCHHHHHHHHHTEEEE----EEE-EEEEEECS
T ss_pred             HHCCCCCCEEEEECCCC--CCC----------------------CHHHCCHHHHHHHHHHHCCC----CEE-EEECCCCC
T ss_conf             51688777899808877--887----------------------74656899999999873899----589-99268700


Q ss_pred             CC
Q ss_conf             47
Q gi|254780836|r  366 FN  367 (674)
Q Consensus       366 F~  367 (674)
                      +.
T Consensus       203 ~~  204 (294)
T 3adn_A          203 LQ  204 (294)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             16


No 192
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=74.58  E-value=3.8  Score=18.99  Aligned_cols=152  Identities=20%  Similarity=0.270  Sum_probs=83.3

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++....    +.+++      +..-++++ |.+...++.+.--.|+...      -....||-+. +
T Consensus       184 ~~~vlDvGgG~G~~~~~l~----~~~p~------~~~~~~D~-p~~~~~a~~~~~~~~l~~r------i~~~~~d~~~-~  245 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIA----RRAPH------VSATVLEM-AGTVDTARSYLKDEGLSDR------VDVVEGDFFE-P  245 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHH----HHCTT------CEEEEEEC-TTHHHHHHHHHHHTTCTTT------EEEEECCTTS-C
T ss_pred             CCEEEECCCCCCHHHHHHH----HHCCC------EEEEEEEC-HHHHHHHHHHHHHCCCCCC------CEEECCCHHH-C
T ss_conf             7579863899868899999----75894------48999888-4147999999986288743------4351376754-2


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC----
Q ss_conf             9866418999816856765310001112344226666535777747706599999999961466578807999738----
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS----  361 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n----  361 (674)
                      . + ..+|+++..=-+- +|..+.                         ...+|+++...|+|    |||+.|+-.    
T Consensus       246 ~-p-~~~D~v~~~~vlh-~~~d~~-------------------------~~~iL~~~~~aL~p----gg~lli~e~~~~~  293 (360)
T 1tw3_A          246 L-P-RKADAIILSFVLL-NWPDHD-------------------------AVRILTRCAEALEP----GGRILIHERDDLH  293 (360)
T ss_dssp             C-S-SCEEEEEEESCGG-GSCHHH-------------------------HHHHHHHHHHTEEE----EEEEEEEECCBCG
T ss_pred             C-C-CCCCEEEEEEEEE-CCCHHH-------------------------HHHHHHHHHHHHCC----CCEEEEEECCCCC
T ss_conf             7-8-7674898734775-398799-------------------------99999999997199----8389999724689


Q ss_pred             -CC-C-----------CCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEEEEE
Q ss_conf             -97-1-----------3477644326899999988494-688831767765578861699999
Q gi|254780836|r  362 -SS-P-----------LFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWIL  410 (674)
Q Consensus       362 -gs-~-----------LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~Iwil  410 (674)
                       ++ +           .+.|+.--.+++.++++-+-++ +.-|..+|....   .....|+++
T Consensus       294 ~~~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~i~~~p~~~~---~~~~~li~~  353 (360)
T 1tw3_A          294 ENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTI---PYDLSLLVL  353 (360)
T ss_dssp             GGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSS---SCEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC---CCCEEEEEE
T ss_conf             986005788622888975799689999999999987997889998999987---736489999


No 193
>1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24
Probab=74.19  E-value=3.9  Score=18.93  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=57.4

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
                      |-+-..|++-||+.+-          +.....|..--||+|.+ |.+   +.+   .     ...++..|+++.....-+
T Consensus         3 FL~d~~i~~~iv~~~~----------~~~~d~vlEIGpG~G~L-T~~---Ll~---~-----~~~v~avE~D~~l~~~L~   60 (252)
T 1qyr_A            3 FLNDQFVIDSIVSAIN----------PQKGQAMVEIGPGLAAL-TEP---VGE---R-----LDQLTVIELDRDLAARLQ   60 (252)
T ss_dssp             EECCHHHHHHHHHHHC----------CCTTCCEEEECCTTTTT-HHH---HHT---T-----CSCEEEECCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCC----------CCCCCEEEEECCCCCHH-HHH---HHH---C-----CCCEEEEEECCHHHHHHH
T ss_conf             5278899999998448----------99979699989987299-999---981---6-----897699996212889999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCEEEEEEECCCCCCC
Q ss_conf             99898088753345666682347545799986-----6418999816856765
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFHYCLSNPPFGKK  304 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~-----~~kFD~vlaNPPFg~~  304 (674)
                      ... .        ....-.|..||-|.-|.-.     +.. -.|++|-||+.+
T Consensus        61 ~~~-~--------~~~~~~ii~~D~l~~~~~~~~~~~~~~-~~vvgNLPY~Is  103 (252)
T 1qyr_A           61 THP-F--------LGPKLTIYQQDAMTFNFGELAEKMGQP-LRVFGNLPYNIS  103 (252)
T ss_dssp             TCT-T--------TGGGEEEECSCGGGCCHHHHHHHHTSC-EEEEEECCTTTH
T ss_pred             HHH-H--------CCCCEEEEECHHHHHCHHHHHCCCCCC-EEEEECCHHHHH
T ss_conf             876-3--------177625650114552321221036897-599946628899


No 194
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=74.18  E-value=3.5  Score=19.28  Aligned_cols=119  Identities=12%  Similarity=0.020  Sum_probs=61.9

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      +|+=---|+||.+-+.       .+..   ...++-..|+++....+|+.-+-..+   ....+..-+|..+|...-=..
T Consensus        93 ~VLiiGgG~G~~~~e~-------l~~~---~~~~v~~VEID~~Vi~~a~~~~~~~~---~~~~d~rv~ii~~Da~~~l~~  159 (296)
T 1inl_A           93 KVLIIGGGDGGTLREV-------LKHD---SVEKAILCEVDGLVIEAARKYLKQTS---CGFDDPRAEIVIANGAEYVRK  159 (296)
T ss_dssp             EEEEEECTTCHHHHHH-------TTST---TCSEEEEEESCHHHHHHHHHHCHHHH---GGGGCTTEEEEESCHHHHGGG
T ss_pred             EEEEECCCCHHHHHHH-------HHCC---CCCCEEEECCCHHHHHHHHHHHHHHC---CCCCCCCCEEEEHHHHHHHHH
T ss_conf             7999879827999999-------9649---97717886357899999998767622---433699608996148999974


Q ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf             66418999816856765310001112344226666535777747706599999999961466578807999738971347
Q gi|254780836|r  288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN  367 (674)
Q Consensus       288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~  367 (674)
                      ...+||+|+..++-...  .            ...+.         -+--|.+.+-..|++.    |. .++-.+|+.+.
T Consensus       160 ~~~~yDvIi~D~~dp~~--~------------~~~~L---------~t~eFy~~~~~~L~~~----Gi-~v~q~~s~~~~  211 (296)
T 1inl_A          160 FKNEFDVIIIDSTDPTA--G------------QGGHL---------FTEEFYQACYDALKED----GV-FSAETEDPFYD  211 (296)
T ss_dssp             CSSCEEEEEEEC------------------------C---------CSHHHHHHHHHHEEEE----EE-EEEECCCTTTT
T ss_pred             CCCCCCEEEEECCCCCC--C------------CCCCC---------CCHHHHHHHHHHHCCC----CE-EEECCCCCCCC
T ss_conf             78877689990898654--4------------20111---------6799999999860899----69-99867881007


No 195
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca}
Probab=73.88  E-value=2.7  Score=20.03  Aligned_cols=92  Identities=14%  Similarity=0.018  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r  181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML  260 (674)
Q Consensus       181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl  260 (674)
                      .+..+++..|+-     . . .|   .+|.+-.||+|-.-..    +..   ..  ....++++.|.+++..++|+.|+-
T Consensus        42 ~~~g~~L~~L~~-----~-~-~~---~~ILEiGtg~G~st~~----la~---~~--~~~g~v~~id~~~~~~~~ar~~~~  102 (210)
T 3c3p_A           42 RQTGRLLYLLAR-----I-K-QP---QLVVVPGDGLGCASWW----FAR---AI--SISSRVVMIDPDRDNVEHARRMLH  102 (210)
T ss_dssp             HHHHHHHHHHHH-----H-H-CC---SEEEEESCGGGHHHHH----HHT---TS--CTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----H-H-CC---CEEEEEECCCHHHHHH----HHH---HC--CCCEEEEEEECCCCHHHHHHHHHH
T ss_conf             899999999988-----5-6-80---9899950814399999----999---75--568199999775103789998798


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             80887533456666823475457999866418999816
Q gi|254780836|r  261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN  298 (674)
Q Consensus       261 i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaN  298 (674)
                      -.|....      -.+..||.+.-.. ....||+|+..
T Consensus       103 ~~g~~~~------i~~~~gda~~~~~-~~~~fDlifiD  133 (210)
T 3c3p_A          103 DNGLIDR------VELQVGDPLGIAA-GQRDIDILFMD  133 (210)
T ss_dssp             HHSGGGG------EEEEESCHHHHHT-TCCSEEEEEEE
T ss_pred             HCCCCCE------EEEEECCHHHCCC-CCCCCCEEEEC
T ss_conf             7298732------6786134543022-36886789985


No 196
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=73.86  E-value=4  Score=18.88  Aligned_cols=150  Identities=12%  Similarity=0.069  Sum_probs=83.0

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             4031176654046899999999985310053332255046666788999999989808875334566668234754579-
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-  284 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-  284 (674)
                      .++|.+--+|+|---+...   +.+.+      ..+++..|.+++...+|+-++--.|.....     -.+..||.+.- 
T Consensus        57 ~~~vlEiGt~~G~stl~la---~al~~------~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~r-----v~~i~gda~e~L  122 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYIL---NGLAD------NTTLTCIDPESEHQRQAKALFREAGYSPSR-----VRFLLSRPLDVM  122 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHH---HHSCT------TSEEEEECSCHHHHHHHHHHHHHTTCCGGG-----EEEECSCHHHHG
T ss_pred             CCEEEEECCCHHHHHHHHH---HHCCC------CCEEEEEECCHHHHHHHHHHHHHCCCCCCE-----EEEECCCHHHHH
T ss_conf             9989997280579999999---84799------978999989999999999999966887624-----677327789987


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             99866418999816856765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP  364 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~  364 (674)
                      +.+.+..||+|+....-     .+       +                   .-++.+....|++    ||.  ||.++ .
T Consensus       123 ~~l~~~~fDlVfiD~~k-----~~-------y-------------------~~~~~~~~~lLkp----GGv--iv~Dn-v  164 (221)
T 3dr5_A          123 SRLANDSYQLVFGQVSP-----MD-------L-------------------KALVDAAWPLLRR----GGA--LVLAD-A  164 (221)
T ss_dssp             GGSCTTCEEEEEECCCT-----TT-------H-------------------HHHHHHHHHHEEE----EEE--EEETT-T
T ss_pred             HHHCCCCCCEEEECCCH-----HH-------H-------------------HHHHHHHHHHCCC----CCE--EEEEC-C
T ss_conf             87434787779975886-----77-------1-------------------8999998632558----838--99966-7


Q ss_pred             CCCCCCC------CCHHHHHH---HHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             3477644------32689999---9988494688831767765578861699999468874
Q gi|254780836|r  365 LFNGRAG------SGESEIRR---WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE  416 (674)
Q Consensus       365 LF~G~ag------sGEs~IRk---~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~  416 (674)
                      |+.|.-.      ..-..+|.   +|-+..-+++++ ||-    +.|    |.|..|..+.
T Consensus       165 l~~G~V~d~~~~d~~~~~~r~~~~~l~~~~~~~~~~-lPi----gdG----l~v~~K~~~~  216 (221)
T 3dr5_A          165 LLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVAR-LPL----GAG----LTVVTKALEH  216 (221)
T ss_dssp             TGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEE-ESS----TTC----EEEEEECCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE-EEE----CCC----EEEEEECHHH
T ss_conf             567855785447877899999999997399958999-870----881----1899980220


No 197
>2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.25  E-value=4.3  Score=18.64  Aligned_cols=84  Identities=19%  Similarity=0.133  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             82347545799986641899981685676531000111234422666653577774770659999999996146657880
Q gi|254780836|r  275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG  354 (674)
Q Consensus       275 NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~gg  354 (674)
                      ++...+.|..-.|.+..||+|++|--+.  |-                      +.-+   ..++..+..-|||    ||
T Consensus        50 ~v~~~~~l~~~~~~~~sfD~v~s~~~~~--~~----------------------~~~~---~~~l~e~~rvLKP----gG   98 (182)
T 2yui_A           50 SVENIKQLLQSAHKESSFDIILSGLVPG--ST----------------------TLHS---AEILAEIARILRP----GG   98 (182)
T ss_dssp             EEEETTHHHHSCCCTTCBSEEEESCSSS--CC----------------------CCCC---HHHHHHHHHHBCT----TS
T ss_pred             EEEEHHHCCCCCCCCCCCCEEEECCEEC--CC----------------------CCCH---HHHHHHHHHHHCC----CE
T ss_conf             9987000034787545763899823233--67----------------------6228---9999999997068----86


Q ss_pred             EEEEECC--CCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             7999738--97134776443268999999884946888
Q gi|254780836|r  355 RAAIVLS--SSPLFNGRAGSGESEIRRWLLENDLIEAI  390 (674)
Q Consensus       355 r~aIV~n--gs~LF~G~agsGEs~IRk~lie~d~ieaI  390 (674)
                      |+.+.-+  .+.--.+.+.. ...+++.|...++++.-
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~laGf~~v~  135 (182)
T 2yui_A           99 CLFLKEPVETAVDNNSKVKT-ASKLCSALTLSGLVEVK  135 (182)
T ss_dssp             CCEEEEEECCCCCSSCCSCC-HHHHHHHHHHHTCEEEE
T ss_pred             EEEEEECCCCCCCCCCCCCC-HHHHHHHHHHCCCCEEC
T ss_conf             99998326555566520104-99999999876582132


No 198
>3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A*
Probab=69.08  E-value=5.1  Score=18.19  Aligned_cols=101  Identities=12%  Similarity=-0.022  Sum_probs=55.0

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||.|.||-...    +    .+    ...+|.|........|+.+    |....       +-.+.......
T Consensus       108 ~~~ileIG~~dG~lL~~~~----~----~~----~~~~Gidps~~~~~~~~~~----~~~~~-------~~~~~~~~~~~  164 (416)
T 3ndi_A          108 DPFIVEIGCNDGIMLRTIQ----E----AG----VRHLGFEPSSGVAAKAREK----GIRVR-------TDFFEKATADD  164 (416)
T ss_dssp             SCEEEEETCTTTTTHHHHH----H----TT----CEEEEECSCHHHHHHHHHT----TCCEE-------CSCCSHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHH----H----CC----CCEEEECCCCCHHHHHCCC----CCCEE-------EECCHHHHHHH
T ss_conf             8779983588870544334----2----03----5324422562034443035----56368-------40420566788


Q ss_pred             -CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             -9866418999816856765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r  286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       286 -~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                       .....+||+|+++==|-             |-..+               ..||..+-..|++.    |...+-.|
T Consensus       165 ~~~~~~k~D~I~~~~vle-------------Hi~dp---------------~~fl~~i~~~L~~~----G~~~ievp  209 (416)
T 3ndi_A          165 VRRTEGPANVIYAANTLC-------------HIPYV---------------QSVLEGVDALLAPD----GVFVFEDP  209 (416)
T ss_dssp             HHHHHCCEEEEEEESCGG-------------GCSCH---------------HHHHHHHHHHEEEE----EEEEEEEE
T ss_pred             HHHCCCCCCEEEEEEEHH-------------CCCCH---------------HHHHHHHHHHHCCC----CEEEEEEC
T ss_conf             885158751887750053-------------15028---------------99999999874668----76999816


No 199
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125}
Probab=65.84  E-value=5.9  Score=17.77  Aligned_cols=93  Identities=12%  Similarity=0.004  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r  180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM  259 (674)
Q Consensus       180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM  259 (674)
                      .++...++..++-     ..  +|   .+|.+--||+|-.-+.....+    ++      ..+++.|.+++.+++|+.++
T Consensus        39 ~~~~~~~l~~l~~-----~~--~~---~~VLEIGtg~G~Stl~la~~~----p~------~~v~tiD~~~~~~~~A~~~~   98 (233)
T 2gpy_A           39 DLLGMESLLHLLK-----MA--AP---ARILEIGTAIGYSAIRMAQAL----PE------ATIVSIERDERRYEEAHKHV   98 (233)
T ss_dssp             CHHHHHHHHHHHH-----HH--CC---SEEEEECCTTSHHHHHHHHHC----TT------CEEEEECCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-----HH--CC---CEEEEEECCCCHHHHHHHHHC----CC------CEEEEEEECHHHHHHHHHHH
T ss_conf             8899999999988-----65--89---989996112129999999878----99------77999970489999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCEEEEEEEC
Q ss_conf             980887533456666823475457999-8-66418999816
Q gi|254780836|r  260 LIRRLESDPRRDLSKNIQQGSTLSKDL-F-TGKRFHYCLSN  298 (674)
Q Consensus       260 li~g~~~d~~~~~~~NI~~GdTL~~d~-~-~~~kFD~vlaN  298 (674)
                      --.|....      -.+..||.+.-.. . ....||+|...
T Consensus        99 ~~~gl~~~------I~~~~gda~d~l~~l~~~~~fD~ifiD  133 (233)
T 2gpy_A           99 KALGLESR------IELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             HHTTCTTT------EEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             HHHHHCCC------CEEEECCHHHHHHHHCCCCCCCEEEEC
T ss_conf             99742121------126533287777751135776289972


No 200
>2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A*
Probab=64.34  E-value=6.3  Score=17.59  Aligned_cols=145  Identities=11%  Similarity=-0.011  Sum_probs=71.1

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
                      .|+=---|.||.+-+.       ....   ...++-..|+++....+|+--+-...   ....+..-++..+|-..-=..
T Consensus        81 ~vLiiGgG~G~~~~el-------lk~~---~~~~i~~VEiD~~Vi~~a~~~f~~~~---~~~~d~rv~v~~~Da~~~l~~  147 (283)
T 2i7c_A           81 NVLVVGGGDGGIIREL-------CKYK---SVENIDICEIDETVIEVSKIYFKNIS---CGYEDKRVNVFIEDASKFLEN  147 (283)
T ss_dssp             EEEEEECTTSHHHHHH-------TTCT---TCCEEEEEESCHHHHHHHHHHCTTTS---GGGGSTTEEEEESCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHH-------HHCC---CCCEEEEECCCHHHHHHHHHHHHHCC---CCCCCCCCCEEECHHHHHHHH
T ss_conf             4999838834999999-------9749---96379997478999999998746502---422487652896068999974


Q ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCC
Q ss_conf             6641899981685676531000111234422666653577774770659999999996146657880799973-897134
Q gi|254780836|r  288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLF  366 (674)
Q Consensus       288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF  366 (674)
                      ...+||+|+..++-..  ..                      +.+=-+.-|.+.+-..|++.    |  .+|. .+|+.+
T Consensus       148 ~~~~yDvIi~D~~dp~--~~----------------------~~~L~t~eF~~~~~~~L~~~----G--i~v~q~~s~~~  197 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPI--GP----------------------AETLFNQNFYEKIYNALKPN----G--YCVAQCESLWI  197 (283)
T ss_dssp             CCSCEEEEEEECCCTT--TG----------------------GGGGSSHHHHHHHHHHEEEE----E--EEEEECCCTTT
T ss_pred             CCCCCCEEEEECCCCC--CC----------------------HHHHCCHHHHHHHHHHCCCC----C--EEEEECCCCCC
T ss_conf             6887777999479988--74----------------------26554899999998761899----6--89994788010


Q ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf             7764432689999998849468883176776557886169
Q gi|254780836|r  367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY  406 (674)
Q Consensus       367 ~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~  406 (674)
                      .-..   -..|++.+-+. +       |.-.+|.+.||||
T Consensus       198 ~~~~---~~~i~~~l~~~-F-------~~v~~y~~~iPty  226 (283)
T 2i7c_A          198 HVGT---IKNMIGYAKKL-F-------KKVEYANISIPTY  226 (283)
T ss_dssp             CHHH---HHHHHHHHHTT-C-------SEEEEEEEECTTS
T ss_pred             CHHH---HHHHHHHHHHH-C-------CCEEEEEEEECCC
T ss_conf             7999---99999988765-8-------9547899896453


No 201
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; 1.91A {Methanocaldococcus jannaschii DSM2661}
Probab=63.04  E-value=6.6  Score=17.44  Aligned_cols=37  Identities=19%  Similarity=0.367  Sum_probs=24.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             6654046899999999985310053332255046666788999
Q gi|254780836|r  212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       212 PaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      -+|.++.|-..+...+...+.+      ...||-|-...+..+
T Consensus       124 ~~~~sa~Fa~~aV~ll~~lg~d------~l~FG~e~~~~~~~~  160 (357)
T 3gmi_A          124 GIMGSGQYMRCLIKMFYSLGAE------IIPRGYIPEKTMEKV  160 (357)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTCC------EEEEEECCCHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHCCCC------EEECCCCCHHHHHHH
T ss_conf             6744278898898888872975------220158882799999


No 202
>3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A*
Probab=61.67  E-value=7  Score=17.28  Aligned_cols=131  Identities=13%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf             31176654046899999999985310053332255046666788999999989-808875334566668234754579-9
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSK-D  285 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~-d  285 (674)
                      .|+=---|.||.+-+..+|       .   ....+-..|++++...+|+.-+- .++    ...+..-+|..+|-..- .
T Consensus        98 ~VLIiGgGdG~~~rellk~-------~---~v~~v~~VEID~~Vi~~~~~~~p~~~~----~~~dprv~iii~D~~~~l~  163 (304)
T 3bwc_A           98 RVLIIGGGDGGVLREVLRH-------G---TVEHCDLVDIDGEVMEQSKQHFPQISR----SLADPRATVRVGDGLAFVR  163 (304)
T ss_dssp             EEEEEECTTSHHHHHHHTC-------T---TCCEEEEEESCHHHHHHHHHHCHHHHG----GGGCTTEEEEESCHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHC-------C---CCCEEEEEECCHHHHHHHHHHCHHHHC----CCCCCCEEEEECHHHHHHH
T ss_conf             6999838937999999965-------9---942799980588999999986544301----1149864899866999997


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf             98664189998168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL  365 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L  365 (674)
                      ...+.+||+|+...+-..   .            ...+.         -+.-|.+.+-..|++.    |. .++-.+|+.
T Consensus       164 ~~~~~~yDvIi~D~~dp~---~------------~~~~L---------~t~eFy~~~~~~L~~~----Gv-~v~q~~s~~  214 (304)
T 3bwc_A          164 QTPDNTYDVVIIDTTDPA---G------------PASKL---------FGEAFYKDVLRILKPD----GI-CCNQGESIW  214 (304)
T ss_dssp             SSCTTCEEEEEEECC---------------------------------CCHHHHHHHHHHEEEE----EE-EEEEECCTT
T ss_pred             HCCCCCCCEEEEECCCCC---C------------CHHHH---------CCHHHHHHHHHHHCCC----CE-EEEECCCCC
T ss_conf             463468768999089988---7------------25765---------4299999999983789----88-999078854


Q ss_pred             CCCCCCCCHHHHHHHHHHC
Q ss_conf             4776443268999999884
Q gi|254780836|r  366 FNGRAGSGESEIRRWLLEN  384 (674)
Q Consensus       366 F~G~agsGEs~IRk~lie~  384 (674)
                      +....   -..+.+.+-+-
T Consensus       215 ~~~~~---~~~~~~~l~~~  230 (304)
T 3bwc_A          215 LDLEL---IEKMSRFIRET  230 (304)
T ss_dssp             TCHHH---HHHHHHHHHHH
T ss_pred             CCHHH---HHHHHHHHHHH
T ss_conf             48899---99999999873


No 203
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=61.35  E-value=4.3  Score=18.69  Aligned_cols=74  Identities=18%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf             031176654046899999999985310053332255046666788999999989808875334566668234754--579
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--LSK  284 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT--L~~  284 (674)
                      .+|.|-+||.|||= .+.+.       ++.. .-.+++.|+++..-..-+.|-   +.         ..+..+|-  +..
T Consensus         3 lkvidLFsG~GG~~-~gl~~-------aG~~-~~~v~a~e~d~~a~~ty~~N~---~~---------~~~~~~di~~~~~   61 (343)
T 1g55_A            3 LRVLELYSGVGGMH-HALRE-------SCIP-AQVVAAIDVNTVANEVYKYNF---PH---------TQLLAKTIEGITL   61 (343)
T ss_dssp             EEEEEETCTTCHHH-HHHHH-------HTCS-EEEEEEECCCHHHHHHHHHHC---TT---------SCEECSCGGGCCH
T ss_pred             CEEEEECCCHHHHH-HHHHH-------CCCC-CEEEEEEECCHHHHHHHHHHC---CC---------CCEEECCHHHCCH
T ss_conf             77999182764899-99997-------4999-869999989999999999978---99---------9754075334989


Q ss_pred             CCCCCCEEEEEEECCCC
Q ss_conf             99866418999816856
Q gi|254780836|r  285 DLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       285 d~~~~~kFD~vlaNPPF  301 (674)
                      ..++...+|++++-||=
T Consensus        62 ~~~~~~~~Dll~ggpPC   78 (343)
T 1g55_A           62 EEFDRLSFDMILMSPPC   78 (343)
T ss_dssp             HHHHHHCCSEEEECCC-
T ss_pred             HHCCCCCCCEEEEECCC
T ss_conf             57587786779972899


No 204
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=59.54  E-value=7.6  Score=17.04  Aligned_cols=77  Identities=16%  Similarity=0.067  Sum_probs=44.5

Q ss_pred             CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             13877640311766540468999999999853100533322550466667889999999898088753345666682347
Q gi|254780836|r  200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG  279 (674)
Q Consensus       200 ~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~G  279 (674)
                      ++.+-....|.|-+||-|||=. +.+.       ++.   -.+++.|+++..-.+-+.|.   +.           ...|
T Consensus         5 ~~~~~~~lr~~~lFsG~GG~~~-gl~~-------aG~---~~~~a~e~d~~a~~~~~~N~---~~-----------~~~~   59 (327)
T 2c7p_A            5 KDKQLTGLRFIDLFAGLGGFRL-ALES-------CGA---ECVYSNEWDKYAQEVYEMNF---GE-----------KPEG   59 (327)
T ss_dssp             SSCTTTTCEEEEETCTTTHHHH-HHHH-------TTC---EEEEEECCCHHHHHHHHHHH---SC-----------CCBS
T ss_pred             CCCCCCCCEEEEECCCCCHHHH-HHHH-------CCC---EEEEEEECCHHHHHHHHHHC---CC-----------CCCC
T ss_conf             4356899818996807468999-9998-------799---79999938999999999877---99-----------9757


Q ss_pred             CCCCCCCCCCCEEEEEEECCCC
Q ss_conf             5457999866418999816856
Q gi|254780836|r  280 STLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       280 dTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      |--.-+.-.-..+|++++-||-
T Consensus        60 Di~~~~~~~~~~~Dll~gg~PC   81 (327)
T 2c7p_A           60 DITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             CGGGSCGGGSCCCSEEEEECCC
T ss_pred             CHHHCCHHHCCCCCEEEECCCC
T ss_conf             5323885147775679975898


No 205
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=57.65  E-value=8.2  Score=16.84  Aligned_cols=145  Identities=11%  Similarity=0.042  Sum_probs=73.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf             031176654046899999999985310053332255046666788999999989808875334566668234754579-9
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D  285 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d  285 (674)
                      .+|.+--||+|---.    ++.+.-+     ....+++.|.+++.+.+++-++--.|.....      .+..|+.... +
T Consensus        60 k~ILEiGt~~G~St~----~la~al~-----~~g~i~tie~~~~~~~~a~~~~~~~g~~~~i------~~~~~~~~d~l~  124 (223)
T 3duw_A           60 RNILEIGTLGGYSTI----WLARGLS-----SGGRVVTLEASEKHADIARSNIERANLNDRV------EVRTGLALDSLQ  124 (223)
T ss_dssp             SEEEEECCTTSHHHH----HHHTTCC-----SSCEEEEEESCHHHHHHHHHHHHHTTCTTTE------EEEESCHHHHHH
T ss_pred             CEEEEEECCCCHHHH----HHHHHCC-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCEE------EEEECCCHHHHH
T ss_conf             889998344278999----9997488-----8885999944888899999999984997646------687345236777


Q ss_pred             C---CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             9---8664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r  286 L---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       286 ~---~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
                      .   .....||+|...-.     +..                          -..++......|++    ||  .||..+
T Consensus       125 ~L~~~~~~~fD~ifiD~~-----~~~--------------------------~~~~~~~~~~lLrp----GG--vii~Dn  167 (223)
T 3duw_A          125 QIENEKYEPFDFIFIDAD-----KQN--------------------------NPAYFEWALKLSRP----GT--VIIGDN  167 (223)
T ss_dssp             HHHHTTCCCCSEEEECSC-----GGG--------------------------HHHHHHHHHHTCCT----TC--EEEEES
T ss_pred             HHHHCCCCCEEEEEEECC-----HHH--------------------------HHHHHHHHHHCCCC----CC--EEEEEC
T ss_conf             765057876659999657-----466--------------------------89999999822589----97--899967


Q ss_pred             CCCCCCCCC-----CCH-HHHHH---HHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf             713477644-----326-89999---9988494688831767765578861
Q gi|254780836|r  363 SPLFNGRAG-----SGE-SEIRR---WLLENDLIEAIVALPTDLFFRTNIA  404 (674)
Q Consensus       363 s~LF~G~ag-----sGE-s~IRk---~lie~d~ieaII~LP~~lFynTgI~  404 (674)
                       +||.|.-.     ... ..||+   ++.++.-+++++-.|..-...-|+.
T Consensus       168 -v~~~g~v~~~~~~~~~~~~~r~f~~~i~~d~~~~~~~Lp~~g~~~~DGl~  217 (223)
T 3duw_A          168 -VVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFI  217 (223)
T ss_dssp             -CSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEE
T ss_pred             -CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEE
T ss_conf             -86687535854468889999999999971999669984057987898479


No 206
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17
Probab=55.31  E-value=8.9  Score=16.59  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=59.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             031176654046899999999985310053332255046666788999999989-8088753345666682347545799
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ++|+--.+|+|+.+-+...       .   ....++-..|++|....+|+..+- +.+..   ..+..-+|..+|-..-=
T Consensus        79 k~vLiiG~G~G~~~~~ll~-------~---~~~~~i~~VEiDp~Vi~~a~~~f~~~~~~~---~~dprv~v~~~Da~~~l  145 (314)
T 1uir_A           79 KRVLIVGGGEGATLREVLK-------H---PTVEKAVMVDIDGELVEVAKRHMPEWHQGA---FDDPRAVLVIDDARAYL  145 (314)
T ss_dssp             CEEEEEECTTSHHHHHHTT-------S---TTCCEEEEEESCHHHHHHHHHHCHHHHTTG---GGCTTEEEEESCHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHH-------C---CCCCEEEEECHHHHHHHHHHHCCCCCCCCC---CCCCEEEEEECHHHHHH
T ss_conf             8799988983799999986-------5---996779874021899999875183013453---56870699972599999


Q ss_pred             CCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             986641899981685--6765310001112344226666535777747706599999999961466
Q gi|254780836|r  286 LFTGKRFHYCLSNPP--FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP  349 (674)
Q Consensus       286 ~~~~~kFD~vlaNPP--Fg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~  349 (674)
                      .....+||+|+..++  ++.+                       .|+..=-+--|.+.+-..|++.
T Consensus       146 ~~~~~~yDvIi~D~~dp~~~~-----------------------~~~~~L~t~eF~~~~~~~L~~~  188 (314)
T 1uir_A          146 ERTEERYDVVIIDLTDPVGED-----------------------NPARLLYTVEFYRLVKAHLNPG  188 (314)
T ss_dssp             HHCCCCEEEEEEECCCCBSTT-----------------------CGGGGGSSHHHHHHHHHTEEEE
T ss_pred             HHCCCCCCEEEECCCCCCCCC-----------------------CHHHHHCCHHHHHHHHHHCCCC
T ss_conf             748776788998788754577-----------------------5144444599999999746898


No 207
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum}
Probab=54.86  E-value=9.1  Score=16.54  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=10.7

Q ss_pred             CCCCCC-CCCCCCCHHHHHHHHHHC
Q ss_conf             897134-776443268999999884
Q gi|254780836|r  361 SSSPLF-NGRAGSGESEIRRWLLEN  384 (674)
Q Consensus       361 ngs~LF-~G~agsGEs~IRk~lie~  384 (674)
                      ||+-|| ||.-||....+.|.+-||
T Consensus       569 ~GGglfETGAGGSAPKhVqQ~~~En  593 (738)
T 2b0t_A          569 AGGGLFETGAGGSAPKHVQQVQEEN  593 (738)
T ss_dssp             TSCEEEECCSSCCCHHHHHHHHHHS
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHCC
T ss_conf             4783232488888618999998727


No 208
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=52.44  E-value=9.9  Score=16.30  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=15.7

Q ss_pred             ECCCCCCC-CCCCCCCHHHHHHHHHHCC
Q ss_conf             73897134-7764432689999998849
Q gi|254780836|r  359 VLSSSPLF-NGRAGSGESEIRRWLLEND  385 (674)
Q Consensus       359 V~ngs~LF-~G~agsGEs~IRk~lie~d  385 (674)
                      .++|+-|| ||.-||....+++.+=|++
T Consensus       571 Lm~GGgLFETGAGGSAPKhvqQ~~~E~h  598 (741)
T 1itw_A          571 LMSGGGLFETGAGGSAPKHVQQFLEEGY  598 (741)
T ss_dssp             BTTSCEEEESCSSCCCHHHHHHHHHHSC
T ss_pred             ECCCCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf             5158714624999970599999976284


No 209
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=52.30  E-value=10  Score=16.28  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.+...       +..        .++|-++.+.                      ...+..+|.. +-
T Consensus        68 ~~~IlDiGCG~G~~~~~-------l~~--------~v~~~D~~~~----------------------~~~~~~~d~~-~l  109 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASS-------IRN--------PVHCFDLASL----------------------DPRVTVCDMA-QV  109 (215)
T ss_dssp             TSCEEEETCTTCHHHHH-------CCS--------CEEEEESSCS----------------------STTEEESCTT-SC
T ss_pred             CCEEEEECCCCCHHHHH-------HCC--------EEEEEECCCC----------------------CCCEEECCCC-CC
T ss_conf             88799832783399986-------302--------2677302368----------------------8605772432-48


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf             98664189998168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL  365 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L  365 (674)
                      .+++..||+|++.-=+  -|.                          |. -.+|+-+-.-|||    ||++.|+-..|- 
T Consensus       110 p~~d~sfD~v~~~~~l--~~~--------------------------d~-~~~l~E~~RvLkp----gG~l~i~e~~~r-  155 (215)
T 2zfu_A          110 PLEDESVDVAVFCLSL--MGT--------------------------NI-RDFLEEANRVLKP----GGLLKVAEVSSR-  155 (215)
T ss_dssp             SCCTTCEEEEEEESCC--CSS--------------------------CH-HHHHHHHHHHEEE----EEEEEEEECGGG-
T ss_pred             CCCCCCCCEEEEECCE--ECC--------------------------CH-HHHHHHHHHHCCC----CEEEEEEEECCC-
T ss_conf             8889968979997310--458--------------------------98-9999999985389----839999994100-


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             477644326899999988494688831767765
Q gi|254780836|r  366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF  398 (674)
Q Consensus       366 F~G~agsGEs~IRk~lie~d~ieaII~LP~~lF  398 (674)
                      |..     .....+.+-..++--.-..-..+.|
T Consensus       156 ~~~-----~~~f~~~~~~~GF~~~~~~~~~~~f  183 (215)
T 2zfu_A          156 FED-----VRTFLRAVTKLGFKIVSKDLTNSHF  183 (215)
T ss_dssp             CSC-----HHHHHHHHHHTTEEEEEEECCSTTC
T ss_pred             CCC-----HHHHHHHHHHCCCEEEEEECCCCCE
T ss_conf             167-----8999999997898897652577878


No 210
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=51.70  E-value=10  Score=16.22  Aligned_cols=55  Identities=9%  Similarity=0.128  Sum_probs=23.4

Q ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             35775444236289999874024567333761144389999999998622766575368179
Q gi|254780836|r  121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD  182 (674)
Q Consensus       121 ~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~  182 (674)
                      ...|..|++...|...+.+...-.++   +....+..+-|-|+.-+++.    .|..|||--
T Consensus        72 ~~~I~~Ldd~~~l~~~L~~l~~~~~~---v~~~~f~~~g~~ll~~l~~~----lG~~~T~e~  126 (146)
T 3d1k_B           72 DRGMKNMDNIADAYTDLSTLHSEKLH---VDPDNFKLLSDCITIVLAAK----MGHAFTAET  126 (146)
T ss_dssp             HHHHHTGGGHHHHTHHHHHHHHHTTC---CCTHHHHHHHHHHHHHHHHH----HGGGSCHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHH----CCCCCCHHH
T ss_conf             99998242388899999996044339---98777999999999999987----365399999


No 211
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=50.68  E-value=11  Score=16.12  Aligned_cols=144  Identities=17%  Similarity=0.018  Sum_probs=65.9

Q ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH-----------------HCCC
Q ss_conf             77640311766540468999999999853100533322550466667889999999898-----------------0887
Q gi|254780836|r  203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI-----------------RRLE  265 (674)
Q Consensus       203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli-----------------~g~~  265 (674)
                      ...++++.|-.||+|-+-.      ....+.     ...++|.|+.+......+..+--                 .|..
T Consensus        69 ~~~G~~lLDvG~Gpgi~~~------l~a~~~-----~~~I~~~D~s~~~~~~~~kw~~~~~~~~dws~~~~~v~~leg~~  137 (289)
T 2g72_A           69 EVSGRTLIDIGSGPTVYQL------LSACSH-----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             CSCCSEEEEETCTTCCGGG------TTGGGG-----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             CCCCCEEEEECCCCCHHHH------HHHCCC-----CCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             8789889995747136788------875646-----78148854989999999988752877667226788887301566


Q ss_pred             CCC------CCCCCCCCCCCCCC-----CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             533------45666682347545-----7999866418999816856765310001112344226666535777747706
Q gi|254780836|r  266 SDP------RRDLSKNIQQGSTL-----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG  334 (674)
Q Consensus       266 ~d~------~~~~~~NI~~GdTL-----~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg  334 (674)
                      ...      ......++...|.+     .........||+|++.-=.-        .+.                +.. .
T Consensus       138 ~~~~~~~~~lr~~vk~v~~~Dv~~~~~l~~~~~~~~~fD~v~~~f~l~--------~~~----------------~~~-~  192 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE--------AVS----------------PDL-A  192 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHH--------HHC----------------SSH-H
T ss_pred             CCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCEEEHHHHHH--------HHC----------------CCH-H
T ss_conf             405667788776403540201357887676766788606771076798--------857----------------988-9


Q ss_pred             HH-HHHHHHHHHHCCCCCCCCEEEEEC--CCCCCCCCCC-----CCCHHHHHHHHHHCCC
Q ss_conf             59-999999996146657880799973--8971347764-----4326899999988494
Q gi|254780836|r  335 SM-LFLMHLANKLELPPNGGGRAAIVL--SSSPLFNGRA-----GSGESEIRRWLLENDL  386 (674)
Q Consensus       335 ~~-lFlqh~i~klk~~~~~ggr~aIV~--ngs~LF~G~a-----gsGEs~IRk~lie~d~  386 (674)
                      ++ ..+.++.+-|||    ||..+++-  +.+--..|+.     .=.+..||+.|-+.++
T Consensus       193 ~~~~~~~~~~~lLkp----GG~li~~~~~~~~~y~~g~~~f~~~~l~~e~v~~~l~~aGf  248 (289)
T 2g72_A          193 SFQRALDHITTLLRP----GGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGY  248 (289)
T ss_dssp             HHHHHHHHHHTTEEE----EEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHCC----CCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             999999999997579----96899999617765673782213103299999999998799


No 212
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei}
Probab=50.67  E-value=6.7  Score=17.42  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=23.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             0311766540468999999999853100
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHH  234 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~  234 (674)
                      .-++||-++|||=++.|.+.+++++...
T Consensus       132 villDPmlATG~s~~~ai~~L~~~Gv~~  159 (217)
T 3dmp_A          132 FILCDPMVATGYSAAHAIDVLKRRGVPG  159 (217)
T ss_dssp             EEEECSEESSSHHHHHHHHHHHTTTCCG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             9999440257757999999999849984


No 213
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
Probab=46.92  E-value=12  Score=15.74  Aligned_cols=51  Identities=16%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCCCE-------EEEEEECCCCCCCCCCEEEEECHHHH
Q ss_conf             8999999884946888317677655788616-------99999468874348838997236776
Q gi|254780836|r  375 SEIRRWLLENDLIEAIVALPTDLFFRTNIAT-------YLWILSNRKTEERRGKVQLINATDLW  431 (674)
Q Consensus       375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t-------~Iwil~k~K~~~rkgkV~lIDAs~~~  431 (674)
                      .++|+.|-++++=-++|.-|.|+||=||..+       .++|. .+..     -++++++...-
T Consensus         6 ~klr~~m~~~~ld~~lit~~~ni~YlTGf~~~~~er~~~l~i~-~~~~-----~~li~~~~~~~   63 (132)
T 3ooo_A            6 NRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLFVY-EDRD-----PILFVPALEVS   63 (132)
T ss_dssp             HHHHHHHHHTTCSEEEECCHHHHHHHHSCCCCCTTSCCEEEEE-SSSC-----CEEEEEGGGHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCCCEEEEEEC-CCCC-----EEEECCHHHHH
T ss_conf             9999999986999999925313247408667876431677876-8997-----68972477688


No 214
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A*
Probab=45.46  E-value=10  Score=16.27  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=24.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             76654046899999999985310053332255046666
Q gi|254780836|r  211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       211 DPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      =.+||+||+++-...++++.++.      ..++|.|-.
T Consensus       177 v~~vG~Gg~~~Gi~~~lk~~~~~------~~iigVep~  208 (313)
T 2q3b_A          177 VAGVGTGGTITGVAQVIKERKPS------ARFVAVEPA  208 (313)
T ss_dssp             EEECSSSHHHHHHHHHHHHHCTT------CEEEEEEET
T ss_pred             EECCCCCHHHHHHHHHHHHHCCC------CEEEEECCC
T ss_conf             97888718799999999972999------889998789


No 215
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=43.90  E-value=13  Score=15.44  Aligned_cols=144  Identities=16%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989-80887533456666823475457999
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .|+=-.-|.|+.+-+..       ..   ....++-..|++++...+|+.-+- ..+.-.    +..-+|..+|...-=.
T Consensus        78 ~VLiiGgG~G~~~~~~l-------~~---~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~----dprv~i~~~Da~~~l~  143 (275)
T 1iy9_A           78 HVLVVGGGDGGVIREIL-------KH---PSVKKATLVDIDGKVIEYSKKFLPSIAGKLD----DPRVDVQVDDGFMHIA  143 (275)
T ss_dssp             EEEEESCTTCHHHHHHT-------TC---TTCSEEEEEESCHHHHHHHHHHCHHHHTTTT----STTEEEEESCSHHHHH
T ss_pred             EEEEEECCCHHHHHHHH-------HC---CCCCEEEEEEECHHHHHHHHHHCHHHCCCCC----CCCCEEEECHHHHHHH
T ss_conf             59999079639999999-------65---9964699997088999999985723135323----8774389885899875


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCC
Q ss_conf             866418999816856765310001112344226666535777747706599999999961466578807999738-9713
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPL  365 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n-gs~L  365 (674)
                      -...+||+|+..+|-..  ...            . +    |=     +.-|.+.+-..|++.    |  .+|.+ +|+.
T Consensus       144 ~~~~~yDvIi~D~~~p~--~~~------------~-~----L~-----t~eFy~~~~~~L~~~----G--v~v~q~~s~~  193 (275)
T 1iy9_A          144 KSENQYDVIMVDSTEPV--GPA------------V-N----LF-----TKGFYAGIAKALKED----G--IFVAQTDNPW  193 (275)
T ss_dssp             TCCSCEEEEEESCSSCC--SCC------------C-C----CS-----TTHHHHHHHHHEEEE----E--EEEEECCCTT
T ss_pred             CCCCCCCEEEEECCCCC--CCC------------H-H----HC-----CHHHHHHHHHHHCCC----C--EEEECCCCHH
T ss_conf             05677678999389988--721------------2-1----16-----899999999874799----7--9998568813


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf             47764432689999998849468883176776557886169
Q gi|254780836|r  366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY  406 (674)
Q Consensus       366 F~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~  406 (674)
                      +....   -..+.+-|-+. .       |.-..|.+-||||
T Consensus       194 ~~~~~---~~~~~~tl~~v-F-------~~v~~y~~~iPty  223 (275)
T 1iy9_A          194 FTPEL---ITNVQRDVKEI-F-------PITKLYTANIPTY  223 (275)
T ss_dssp             TCHHH---HHHHHHHHHTT-C-------SEEEEEEECCTTS
T ss_pred             HHHHH---HHHHHHHHHHH-C-------CCEEEEEEEEEEE
T ss_conf             34678---89999999987-8-------9738999884032


No 216
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26
Probab=42.13  E-value=14  Score=15.27  Aligned_cols=68  Identities=16%  Similarity=0.299  Sum_probs=39.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754--5799
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--LSKD  285 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT--L~~d  285 (674)
                      .|.|-+||-||| ..+.+..       +.   -.+++.|+++.....-+.|   ++.          .+..||-  +...
T Consensus         2 kv~~lF~G~Gg~-~~gl~~a-------G~---~~~~a~e~d~~a~~~~~~N---~~~----------~~~~~Di~~~~~~   57 (324)
T 1dct_A            2 NLISLFSGAGGL-DLGFQKA-------GF---RIICANEYDKSIWKTYESN---HSA----------KLIKGDISKISSD   57 (324)
T ss_dssp             EEEEESCSSCHH-HHHHHHH-------TC---EEEEEEECCHHHHHHHHHH---CCS----------EEEESCTTTSCGG
T ss_pred             EEEEECCCCCHH-HHHHHHC-------CC---EEEEEEECCHHHHHHHHHH---CCC----------CCCCCCHHHCCHH
T ss_conf             099948074789-9999987-------99---7999996799999999987---899----------9724982459985


Q ss_pred             CCCCCEEEEEEECCCC
Q ss_conf             9866418999816856
Q gi|254780836|r  286 LFTGKRFHYCLSNPPF  301 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPF  301 (674)
                      .+  .++|++++-||=
T Consensus        58 ~~--~~~D~~~~g~PC   71 (324)
T 1dct_A           58 EF--PKCDGIIGGPPC   71 (324)
T ss_dssp             GS--CCCSEEEECCCC
T ss_pred             HC--CCCCEEEECCCC
T ss_conf             76--753657736998


No 217
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=40.38  E-value=15  Score=15.10  Aligned_cols=19  Identities=26%  Similarity=0.244  Sum_probs=11.6

Q ss_pred             EECCCCCCCEECCCCCCHH
Q ss_conf             1565425320078869989
Q gi|254780836|r  582 IPDTNLTEYENVPYLESIQ  600 (674)
Q Consensus       582 ~~D~~lrD~E~vpl~e~i~  600 (674)
                      ..|..|++++-|-+.|-||
T Consensus       789 ~~D~RL~GfDAvV~iEVIE  807 (950)
T 3htx_A          789 EFDSRLHDVDIGTCLEVIE  807 (950)
T ss_dssp             SCCTTSCSCCEEEEESCGG
T ss_pred             CCCCCCCCCCEEEEEEEEE
T ss_conf             5243104887699898750


No 218
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=39.37  E-value=10  Score=16.15  Aligned_cols=25  Identities=16%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3117665404689999999998531
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGS  232 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~  232 (674)
                      =++||-+.|||-++.|.+.+++.+.
T Consensus       137 illDPmlATG~s~~~ai~~L~~~g~  161 (216)
T 1xtt_A          137 IIADPMIATASTMLKVLEEVVKANP  161 (216)
T ss_dssp             EEECSEESSSHHHHHHHHHHGGGCC
T ss_pred             EEECHHHHCHHHHHHHHHHHHHCCC
T ss_conf             9727477541889999999874599


No 219
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metallo peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis atcc 367}
Probab=38.08  E-value=16  Score=14.87  Aligned_cols=57  Identities=9%  Similarity=0.166  Sum_probs=37.4

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE------EEEEECCCCCCCCCCEEEEECHHHHHHHHH
Q ss_conf             89999998849468883176776557886169------999946887434883899723677657640
Q gi|254780836|r  375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATY------LWILSNRKTEERRGKVQLINATDLWTSIRN  436 (674)
Q Consensus       375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t~------Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk  436 (674)
                      .++|+.|-++++=-.+|.=|+|++|=||-..+      ..++..+..     -++++++.......+.
T Consensus         7 ~kl~~~m~~~~lD~~li~~~~ni~YlTG~~~~~~~r~~~l~i~~~~~-----~~li~~~~~~~~a~~~   69 (140)
T 3i7m_A            7 EQIQQWTAQHHASMTYLSNPKTIEYLTGFGSDPIERVLALVVFPDQD-----PFIFAPALEVEVIKET   69 (140)
T ss_dssp             HHHHHHHHHTTCSEEEECCHHHHHHHHCCCCCCCSSCCEEEECSSSC-----CEEEEEGGGHHHHHTT
T ss_pred             HHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCCCCEEEEEECCCCC-----EEEEECCCCHHHHHHC
T ss_conf             99999999869999998464020112375666644337888778990-----8999884116779863


No 220
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=37.27  E-value=17  Score=14.78  Aligned_cols=50  Identities=20%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCCCE-------EEEEEECCCCCCCCCCEEEEECHHH
Q ss_conf             8999999884946888317677655788616-------9999946887434883899723677
Q gi|254780836|r  375 SEIRRWLLENDLIEAIVALPTDLFFRTNIAT-------YLWILSNRKTEERRGKVQLINATDL  430 (674)
Q Consensus       375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t-------~Iwil~k~K~~~rkgkV~lIDAs~~  430 (674)
                      .++|++|-++++=-.+|.=|.|++|=||...       .++ +..+..     -++++++...
T Consensus         6 ~rlr~~m~~~~lD~~li~~~~ni~YltGf~~~~~~r~~~li-i~~~g~-----~~l~~~~~~~   62 (132)
T 3o5v_A            6 DQIRLYLDQKGAELAIFSDPVTINYLTGFFCDPHERQLFLF-VYHDLA-----PVLFVPALEV   62 (132)
T ss_dssp             HHHHHHHHHTTCCEEEECCHHHHHHHHSCCCCCTTSCCEEE-EESSSC-----CEEEEEGGGH
T ss_pred             HHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCEEEEE-ECCCCC-----EEEEECHHHH
T ss_conf             99999999869999999054130230286767643237889-757995-----7999566648


No 221
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=37.13  E-value=17  Score=14.82  Aligned_cols=11  Identities=18%  Similarity=0.470  Sum_probs=8.5

Q ss_pred             EEEEEECCCCC
Q ss_conf             89998168567
Q gi|254780836|r  292 FHYCLSNPPFG  302 (674)
Q Consensus       292 FD~vlaNPPFg  302 (674)
                      -|+|-..|||-
T Consensus       188 ~~fvYlDPPY~  198 (284)
T 2dpm_A          188 GDFVYFDPPYI  198 (284)
T ss_dssp             TCEEEECCCCC
T ss_pred             CCEEEECCCCC
T ss_conf             86899869987


No 222
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
Probab=36.91  E-value=17  Score=14.75  Aligned_cols=130  Identities=11%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989-80887533456666823475457999
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKDL  286 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d~  286 (674)
                      .|+=---|.|+.+-+.       .+...   ...+-..|++++...+|+.-+- +.+.    ..+..-+|..+|...-=.
T Consensus        98 ~VLIiGgG~G~~~~el-------lk~~~---~~~v~~VEiD~~Vi~~a~~~~~~~~~~----~~dpRv~i~~~Da~~~l~  163 (304)
T 2o07_A           98 KVLIIGGGDGGVLREV-------VKHPS---VESVVQCEIDEDVIQVSKKFLPGMAIG----YSSSKLTLHVGDGFEFMK  163 (304)
T ss_dssp             EEEEEECTTSHHHHHH-------TTCTT---CCEEEEEESCHHHHHHHHHHCHHHHGG----GGCTTEEEEESCHHHHHH
T ss_pred             EEEEECCCCHHHHHHH-------HHCCC---CCEEEEECCCHHHHHHHHHHHHHHCCC----CCCCCEEEEEHHHHHHHH
T ss_conf             6999879945999999-------86598---532687604699999999855553344----357724899607999997


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf             86641899981685676531000111234422666653577774770659999999996146657880799973897134
Q gi|254780836|r  287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF  366 (674)
Q Consensus       287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF  366 (674)
                      ....+||+|+..++-..  ...        .     +    |     -+--|.+++-..|++.    |.++ +-.+|+.+
T Consensus       164 ~~~~~yDvIi~D~~dp~--~~~--------~-----~----L-----~t~eFy~~~~~~L~~~----Gv~v-~q~~s~~~  214 (304)
T 2o07_A          164 QNQDAFDVIITDSSDPM--GPA--------E-----S----L-----FKESYYQLMKTALKED----GVLC-CQGECQWL  214 (304)
T ss_dssp             TCSSCEEEEEEECC-----------------------------------CHHHHHHHHHEEEE----EEEE-EEEECTTT
T ss_pred             HCCCCCCEEEECCCCCC--CHH--------H-----H----H-----CCHHHHHHHHHHCCCC----CEEE-EECCCCCC
T ss_conf             47777888999089988--635--------7-----6----5-----3799999999975999----8999-90898100


Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             77644326899999988
Q gi|254780836|r  367 NGRAGSGESEIRRWLLE  383 (674)
Q Consensus       367 ~G~agsGEs~IRk~lie  383 (674)
                      ....   -..|++.+-+
T Consensus       215 ~~~~---~~~i~~~l~~  228 (304)
T 2o07_A          215 HLDL---IKEMRQFCQS  228 (304)
T ss_dssp             CHHH---HHHHHHHHHH
T ss_pred             CHHH---HHHHHHHHHH
T ss_conf             6999---9999999997


No 223
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=36.03  E-value=18  Score=14.66  Aligned_cols=80  Identities=16%  Similarity=0.165  Sum_probs=45.9

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD  285 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d  285 (674)
                      ..+|.|-.||+|.++....+    .+++      +...++++ |.....++.+.--.|....      -....||-+. +
T Consensus       203 ~~~vlDvGgG~G~~~~~l~~----~~P~------l~~~~~Dl-p~v~~~a~~~~~~~~~~~r------i~~~~~d~f~-~  264 (369)
T 3gwz_A          203 AATAVDIGGGRGSLMAAVLD----AFPG------LRGTLLER-PPVAEEARELLTGRGLADR------CEILPGDFFE-T  264 (369)
T ss_dssp             CSEEEEETCTTSHHHHHHHH----HCTT------CEEEEEEC-HHHHHHHHHHHHHTTCTTT------EEEEECCTTT-C
T ss_pred             CCEEEEECCCCCHHHHHHHH----HCCC------CEEEEEEC-HHHHHHHHHHHHHCCCCCC------EEEECCCCCC-C
T ss_conf             86798857888889999999----7899------86999989-6888999987775177752------3685263233-5


Q ss_pred             CCCCCEEEEEEECCCCCCCCC
Q ss_conf             986641899981685676531
Q gi|254780836|r  286 LFTGKRFHYCLSNPPFGKKWE  306 (674)
Q Consensus       286 ~~~~~kFD~vlaNPPFg~~Wk  306 (674)
                      . + ..+|+++..--+- +|.
T Consensus       265 ~-p-~~~D~~~l~~vLh-~~~  282 (369)
T 3gwz_A          265 I-P-DGADVYLIKHVLH-DWD  282 (369)
T ss_dssp             C-C-SSCSEEEEESCGG-GSC
T ss_pred             C-C-CCCEEEEEECCCC-CCC
T ss_conf             8-9-8860999804334-688


No 224
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=35.66  E-value=18  Score=14.62  Aligned_cols=98  Identities=15%  Similarity=0.008  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC--HHHHH
Q ss_conf             5368179999999973178401101387764031176654046899999999985310053332255046666--78899
Q gi|254780836|r  176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE--PETHA  253 (674)
Q Consensus       176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin--~~tya  253 (674)
                      .-|-.|.--+|--.+=.-+.      . -..+++.|--|.||||.-.+    .+.+.       ..+||.+.-  .-.|.
T Consensus        15 ~~yVSRgg~KL~~al~~f~i------~-~~gk~~lDiGaStGGFTd~l----Lq~GA-------~~V~aVDVG~~qL~~~   76 (232)
T 3opn_A           15 LRYVSRGGLKLEKALKEFHL------E-INGKTCLDIGSSTGGFTDVM----LQNGA-------KLVYALDVGTNQLAWK   76 (232)
T ss_dssp             CCSSSTTHHHHHHHHHHTTC------C-CTTCEEEEETCTTSHHHHHH----HHTTC-------SEEEEECSSCCCCCHH
T ss_pred             CCCCCCHHHHHHHHHHHCCC------C-CCCCEEEECCCCCCHHHHHH----HHCCC-------CEEEEEECCCHHHHHH
T ss_conf             98067589999999997799------8-68998998588985899999----98098-------7899994370343077


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             9999989808875334566668234754579998664189998168567
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG  302 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg  302 (674)
                      +.       . ++........|++.   ++...+....+|++++.--|-
T Consensus        77 lr-------~-d~rV~~~E~~n~R~---~~~~~~~~~~~Dlvv~DvSFI  114 (232)
T 3opn_A           77 IR-------S-DERVVVMEQFNFRN---AVLADFEQGRPSFTSIDVSFI  114 (232)
T ss_dssp             HH-------T-CTTEEEECSCCGGG---CCGGGCCSCCCSEEEECCSSS
T ss_pred             HH-------C-CCCCCCHHHHCCCC---CCHHHCCCCCCCEEEECCCHH
T ss_conf             74-------3-98703202101445---533330468887899706517


No 225
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=35.61  E-value=17  Score=14.79  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             03117665404689999999998531
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGS  232 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~  232 (674)
                      .=|.||-++|||=++.|.+.+++++.
T Consensus       139 VillDPmlATG~s~~~ai~~L~~~G~  164 (221)
T 1o5o_A          139 VFLLDPMLATGVSSIKAIEILKENGA  164 (221)
T ss_dssp             EEEECSEESSSHHHHHHHHHHHHTTC
T ss_pred             EEEEHHHHHCCHHHHHHHHHHHHCCC
T ss_conf             89877886477129999999986599


No 226
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=35.30  E-value=17  Score=14.74  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             03117665404689999999998531
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGS  232 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~  232 (674)
                      .=++||-+.|||=++.|.+.+++++.
T Consensus       127 villDPmlATG~s~~~ai~~L~~~G~  152 (209)
T 1i5e_A          127 FIIVDPMLATGGSAVAAIDALKKRGA  152 (209)
T ss_dssp             EEEECSEESSSHHHHHHHHHHHHTTC
T ss_pred             EEEECHHHHCCHHHHHHHHHHHHCCC
T ss_conf             89758688647779999999996699


No 227
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial virulence factor, transferase/DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=34.21  E-value=17  Score=14.72  Aligned_cols=10  Identities=20%  Similarity=0.727  Sum_probs=8.2

Q ss_pred             EEEEECCCCC
Q ss_conf             9998168567
Q gi|254780836|r  293 HYCLSNPPFG  302 (674)
Q Consensus       293 D~vlaNPPFg  302 (674)
                      |+|-..|||-
T Consensus       176 ~fiYlDPPY~  185 (278)
T 2g1p_A          176 SVVYCDPPYA  185 (278)
T ss_dssp             EEEEECCSCC
T ss_pred             EEEEECCCCC
T ss_conf             0899789985


No 228
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=33.70  E-value=14  Score=15.26  Aligned_cols=83  Identities=13%  Similarity=0.127  Sum_probs=42.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             031176654046899999999985310053332255046666788999999989-808875334566668234754579-
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSK-  284 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~-  284 (674)
                      ..|+=--.|.||.+-+..+|    ..       ..+-..|++++...+|+--|- +.+.-.+......-+|..+|...- 
T Consensus       190 k~VLIIGGGdG~~~revlk~----~~-------~~V~~VEID~~Vve~akk~~~~~~~~~~d~~r~~rv~iii~Da~~~l  258 (364)
T 2qfm_A          190 KDVLILGGGDGGILCEIVKL----KP-------KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL  258 (364)
T ss_dssp             CEEEEEECTTCHHHHHHHTT----CC-------SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHC----CC-------CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHH
T ss_conf             85999969943999999861----78-------42899710389999999865654001210844234433557799999


Q ss_pred             --CCCCCCEEEEEEECCC
Q ss_conf             --9986641899981685
Q gi|254780836|r  285 --DLFTGKRFHYCLSNPP  300 (674)
Q Consensus       285 --d~~~~~kFD~vlaNPP  300 (674)
                        -.-.+.+||+|+...+
T Consensus       259 ~~~~~~~~~yDvIi~Dl~  276 (364)
T 2qfm_A          259 KRYAKEGREFDYVINDLT  276 (364)
T ss_dssp             HHHHHHTCCEEEEEEECC
T ss_pred             HHHHHCCCCEEEEEEECC
T ss_conf             974532475029998078


No 229
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=33.67  E-value=19  Score=14.42  Aligned_cols=50  Identities=24%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC-------CCCCCCCCCCE
Q ss_conf             78807999738971347764432689999998849468883176-------77655788616
Q gi|254780836|r  351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-------TDLFFRTNIAT  405 (674)
Q Consensus       351 ~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP-------~~lFynTgI~t  405 (674)
                      ++||.+.+|..-.++++|++     ..-.+||++++++++.+=-       +.-+|+|+..-
T Consensus       133 ~~gg~i~~V~Gpavvhtg~~-----~ala~Lir~GYv~~LlaGNAlAtHDiE~al~gTsLG~  189 (345)
T 3c2q_A          133 TGTGGIAIVGGPAIIHTGGG-----PALAKMVELGYIQAILAGNALATHDIESALYGTSLGV  189 (345)
T ss_dssp             HSSCCEEEEECTHHHHTTCH-----HHHHHHHHTTCCSEEEEEHHHHHHHHHHHHHSEETTE
T ss_pred             CCCCEEEEEECCEEEECCCH-----HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf             27975999978979966968-----9999999829640776341787766777762864476


No 230
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=33.29  E-value=19  Score=14.38  Aligned_cols=50  Identities=10%  Similarity=0.159  Sum_probs=35.0

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             289999874024567333761144389999999998622766575368179999999973
Q gi|254780836|r  132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL  191 (674)
Q Consensus       132 ~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll  191 (674)
                      ....|++.|.+..-.|  .|-|.|       + +-+...|+..||.|.|-.+++.+-.|+
T Consensus       110 ~~~~Il~~F~D~~~ap--fSIH~i-------v-~~g~~~gk~~GeWfGPs~~a~~lk~L~  159 (396)
T 2cy7_A          110 SYFSVLNAFIDRKDSY--YSIHQI-------A-QMGVGEGKSIGQWYGPNTVAQVLKKLA  159 (396)
T ss_dssp             HHHHHHHTTSSSTTST--TCHHHH-------H-HHHHTTTCCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCC--CCHHHH-------H-HHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8999998745798787--479999-------9-999970998745058899999999998


No 231
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1
Probab=32.67  E-value=20  Score=14.31  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             03117665404689999999998531
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGS  232 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~  232 (674)
                      .-++||-+.|||=++.|.+.+++++.
T Consensus       126 vil~DPmlATG~s~~~ai~~Lk~~g~  151 (208)
T 1v9s_A          126 AFLLDPMLATGGSASLALSLLKERGA  151 (208)
T ss_dssp             EEEECSEESSSHHHHHHHHHHHHTTC
T ss_pred             EEEECHHHHCCHHHHHHHHHHHHCCC
T ss_conf             99968366343779999999986599


No 232
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=32.58  E-value=20  Score=14.30  Aligned_cols=15  Identities=33%  Similarity=0.601  Sum_probs=6.8

Q ss_pred             CCCCHHHHHHHHHHC
Q ss_conf             443268999999884
Q gi|254780836|r  370 AGSGESEIRRWLLEN  384 (674)
Q Consensus       370 agsGEs~IRk~lie~  384 (674)
                      .|+|-+.|.+.|++.
T Consensus        25 SG~GK~tL~~~L~~~   39 (219)
T 1s96_A           25 SGAGKSSLIQALLKT   39 (219)
T ss_dssp             TTSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             999999999999863


No 233
>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} SCOP: k.6.1.1
Probab=31.85  E-value=18  Score=14.61  Aligned_cols=16  Identities=38%  Similarity=0.574  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999871
Q gi|254780836|r  657 LKGVEAQIATLLEEMA  672 (674)
Q Consensus       657 i~~le~~i~~ll~~~~  672 (674)
                      |.+||++|..|-+|++
T Consensus         2 iaalekeiaalekeia   17 (26)
T 1u0i_A            2 IAALEKEIAALEKEIA   17 (26)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             1789999999999999


No 234
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=31.28  E-value=21  Score=14.16  Aligned_cols=156  Identities=13%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      +.--...+..+|+.-|+-.     .  +|   .+|..--|++|-=-   .-....+..      ...+...|.+++...+
T Consensus        50 ~~m~~~p~~g~lL~~L~~~-----~--~~---k~vLEiGT~~GySt---l~la~al~~------~g~v~tie~~~~~~~~  110 (237)
T 3c3y_A           50 SYMSTSPLAGQLMSFVLKL-----V--NA---KKTIEVGVFTGYSL---LLTALSIPD------DGKITAIDFDREAYEI  110 (237)
T ss_dssp             GGGSCCHHHHHHHHHHHHH-----T--TC---CEEEEECCTTSHHH---HHHHHHSCT------TCEEEEEESCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH-----H--CC---CEEEEEECCCCHHH---HHHHHHCCC------CCEEEEEEECHHHHHH
T ss_conf             7677699999999999997-----3--99---88999705257899---999974899------8489999602676899


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCC------CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99998980887533456666823475457------999866418999816856765310001112344226666535777
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL  328 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~------~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl  328 (674)
                      |+.+.---|....      -.+..|+.+.      .......+||+|...-.     |..                    
T Consensus       111 A~~~~~~ag~~~~------i~~~~g~a~e~l~~l~~~~~~~~~fD~IFiDad-----k~~--------------------  159 (237)
T 3c3y_A          111 GLPFIRKAGVEHK------INFIESDAMLALDNLLQGQESEGSYDFGFVDAD-----KPN--------------------  159 (237)
T ss_dssp             HHHHHHHTTCGGG------EEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC-----GGG--------------------
T ss_pred             HHHHHHHCCCCCE------EEEEECCCCCCHHHHHHHCCCCCCCCEEEECCC-----HHH--------------------
T ss_conf             9999998499813------899962200001788874035777658997288-----888--------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCH-----------HHHHH---HHHHCCCEEEEEECC
Q ss_conf             7477065999999999614665788079997389713477644326-----------89999---998849468883176
Q gi|254780836|r  329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-----------SEIRR---WLLENDLIEAIVALP  394 (674)
Q Consensus       329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGE-----------s~IRk---~lie~d~ieaII~LP  394 (674)
                            ...++...+..|++    ||  .||..+ +||.|.-....           ..||+   +|-.+.-+++++ ||
T Consensus       160 ------y~~y~e~~~~lL~~----GG--iIi~DN-vL~~G~V~~~~~~~~~~~~~~~~~ir~fn~~i~~d~~~~~~l-LP  225 (237)
T 3c3y_A          160 ------YIKYHERLMKLVKV----GG--IVAYDN-TLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVH-LP  225 (237)
T ss_dssp             ------HHHHHHHHHHHEEE----EE--EEEEEC-TTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEE-EC
T ss_pred             ------HHHHHHHHHHHCCC----CE--EEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EE
T ss_conf             ------99999999865489----84--999956-765885568532342134689999999999986189969999-64


No 235
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=30.54  E-value=22  Score=14.08  Aligned_cols=29  Identities=28%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             65404689999999998531005333225504666
Q gi|254780836|r  213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL  247 (674)
Q Consensus       213 aCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEi  247 (674)
                      +|||||.++-...++++.++..      .++|-|-
T Consensus       179 ~vG~Gg~~~Gi~~~lk~~~~~~------~iv~ve~  207 (322)
T 1z7w_A          179 GIGTGGTITGAGKYLKEQNANV------KLYGVEP  207 (322)
T ss_dssp             ECSSSHHHHHHHHHHHHHCTTC------EEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHCCCCC------EEEEEEC
T ss_conf             6677723578999887608987------8999812


No 236
>3ktb_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, structural genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482}
Probab=30.46  E-value=13  Score=15.63  Aligned_cols=11  Identities=45%  Similarity=1.096  Sum_probs=8.9

Q ss_pred             EEECCC--CCCHH
Q ss_conf             031176--65404
Q gi|254780836|r  207 RTLYDP--TCGTG  217 (674)
Q Consensus       207 ~tIyDP--aCGTG  217 (674)
                      ..||||  ||.||
T Consensus         7 ieifdpamCCstG   19 (106)
T 3ktb_A            7 IEIFDPAMCCPTG   19 (106)
T ss_dssp             EEEEECSCSSTTS
T ss_pred             EEEECHHHCCCCC
T ss_conf             7885511233789


No 237
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=30.28  E-value=22  Score=14.06  Aligned_cols=29  Identities=28%  Similarity=0.508  Sum_probs=23.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             03117665404689999999998531005
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHK  235 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~  235 (674)
                      .-+.||-+.|||=++.|.+.+++++...+
T Consensus       159 Vll~DPMLATG~S~~~ai~~L~~~Gv~~~  187 (243)
T 1bd3_D          159 VMLLDPMCATAGSVCKAIEVLLRLGVKEE  187 (243)
T ss_dssp             EEEECSEESSCHHHHHHHHHHHHHTCCGG
T ss_pred             EEEECCHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf             89868055057229999999997199854


No 238
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=30.00  E-value=10  Score=16.18  Aligned_cols=21  Identities=10%  Similarity=0.031  Sum_probs=9.6

Q ss_pred             CCCCCCCHHHHHHHHHHCCCE
Q ss_conf             776443268999999884946
Q gi|254780836|r  367 NGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       367 ~G~agsGEs~IRk~lie~d~i  387 (674)
                      |-..|||-.-.--|+...+.+
T Consensus       251 t~aCGSGa~A~a~~~~~~g~~  271 (317)
T 3ejx_A          251 TLACGTGACALVVAAVLEGRA  271 (317)
T ss_dssp             CSCCHHHHHHHHHHHHHTTSS
T ss_pred             CCCCHHHHHHHHHHHHHHCCC
T ss_conf             757336899999999981999


No 239
>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli}
Probab=29.96  E-value=19  Score=14.52  Aligned_cols=27  Identities=22%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             031176654046899999999985310
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSH  233 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~  233 (674)
                      .=+.||-++|||=++.|.+.+++++..
T Consensus       126 villDPmlATG~s~~~ai~~L~~~G~~  152 (208)
T 2ehj_A          126 ALIVDPMLATGGSVIATIDLLKKAGCS  152 (208)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHTTCC
T ss_pred             EEEECHHHHCCHHHHHHHHHHHHCCCC
T ss_conf             999683674567799999999857998


No 240
>2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus}
Probab=29.27  E-value=20  Score=14.27  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             0311766540468999999999853
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCG  231 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~  231 (674)
                      .-+.||-++|||=++.|.+.+++.+
T Consensus       124 vlllDPmlATG~s~~~ai~~L~~~g  148 (208)
T 2e55_A          124 VVILDPMLATGGTLEVALREILKHS  148 (208)
T ss_dssp             EEEECSEESSSHHHHHHHHHHHTTC
T ss_pred             EEEECHHHCCCCHHHHHHHHHHHCC
T ss_conf             6983467615715999999998448


No 241
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=27.38  E-value=24  Score=13.73  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=35.7

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC--------CCCCCCCEEEEEEECCCCCCCCCCE-
Q ss_conf             8807999738971347764432689999998849468883176776--------5578861699999468874348838-
Q gi|254780836|r  352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--------FFRTNIATYLWILSNRKTEERRGKV-  422 (674)
Q Consensus       352 ~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~l--------FynTgI~t~Iwil~k~K~~~rkgkV-  422 (674)
                      .+.++.||-.|+++         +.+-++|++...    ..+|.++        .+||||.+..+-........+.+.| 
T Consensus       174 ~~~~vlvVsHG~~i---------~~lv~~l~~~~~----~~~p~~~~~~~~~~~~~Ntsit~~~~~~~~~~~~~~~~~~~  240 (265)
T 3e9c_A          174 VPVHALMVSHGAFI---------RISVRHLVEDLQ----CCLPAGLKMNQVFSPCPNTGISRFIFTIHREESVLRATRIQ  240 (265)
T ss_dssp             CCCEEEEEECHHHH---------HHHHHHHHHTSC----EEECTTCCHHHHTSCCCTTCEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCHHH---------HHHHHHHHHHHC----CCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEE
T ss_conf             99769998998799---------999999998733----37887877777157778766889999516875545676049


Q ss_pred             -EEEECHHHHH
Q ss_conf             -9972367765
Q gi|254780836|r  423 -QLINATDLWT  432 (674)
Q Consensus       423 -~lIDAs~~~~  432 (674)
                       ..+|-.....
T Consensus       241 ~~~~N~~~HL~  251 (265)
T 3e9c_A          241 GVFINRKDHLE  251 (265)
T ss_dssp             EEEEEECTTC-
T ss_pred             EEEECCHHHHH
T ss_conf             99965725431


No 242
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=27.35  E-value=24  Score=13.73  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=25.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             031176654046899999999985310053332255046666
Q gi|254780836|r  207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      ..|+= +||+||+++-...++++.+++      +.++|.|-.
T Consensus       181 D~Ivv-pvGgGGliaGia~~lK~~~P~------ikIIgVEp~  215 (514)
T 1tdj_A          181 DRVFV-PVGGGGLAAGVAVLIKQLMPQ------IKVIAVEAE  215 (514)
T ss_dssp             CEEEE-ECSSSHHHHHHHHHHHHHCTT------CEEEEEEET
T ss_pred             CEEEE-ECCHHHHHHHHHHHHHHHCCC------CEEEEECCC
T ss_conf             99999-276419999999999986998------718877843


No 243
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=25.80  E-value=26  Score=13.55  Aligned_cols=76  Identities=20%  Similarity=0.173  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHH---HH-HHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998622766575368179999---99-9973178401101387764031176654046899999999985310
Q gi|254780836|r  158 IYEHLIRRFGSEVSEGAEDFMTPRDVVH---LA-TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH  233 (674)
Q Consensus       158 iyE~LIrkFae~~~~~aGeffTPR~Vi~---Lm-v~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~  233 (674)
                      ..+..++.-.+...--..+|+-|..++-   .+ -+++     +.+   ++....|. .+||+||++.-...++++.++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~-----eq~---~~~~d~vv-~~vG~Gg~~~Gi~~~~~~~~~~  193 (304)
T 1ve1_A          123 AREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELY-----EAL---EGRIDAFV-YGSGTGGTITGVGRYLKERIPH  193 (304)
T ss_dssp             HHHHHHHHHHHHTCBCCCTTTCHHHHHHHHHTHHHHHH-----HHT---TTCCSEEE-EECSSSHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHH-----HHC---CCCCCEEE-ECCCCCHHHHHHHHHHHHCCCC
T ss_conf             99999976431585006776540659999899999999-----964---99988899-6578807788999999754999


Q ss_pred             CCCCCCEEEECCCCC
Q ss_conf             053332255046666
Q gi|254780836|r  234 HKIPPILVPHGQELE  248 (674)
Q Consensus       234 ~~~~~~~~lyGQEin  248 (674)
                            ..++|.|-.
T Consensus       194 ------~~vigve~~  202 (304)
T 1ve1_A          194 ------VKVIAVEPA  202 (304)
T ss_dssp             ------CEEEEEEEG
T ss_pred             ------CEEEEEECC
T ss_conf             ------889999148


No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=25.11  E-value=6.8  Score=17.34  Aligned_cols=65  Identities=20%  Similarity=0.196  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC--CCCCCEEEEEEECCCCCCCCCCEEEEECHHH
Q ss_conf             897134776443268999999884946888317677655--7886169999946887434883899723677
Q gi|254780836|r  361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDL  430 (674)
Q Consensus       361 ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy--nTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~  430 (674)
                      .++.||-+.---|.|.||+.=++.+-+.+-+.||...|-  =|-....||+++-     +.+.|..+|+...
T Consensus        29 ~~~~LyestG~~G~S~I~~iD~~Tg~v~~~i~l~~~~fgeGit~~g~~lyvltw-----~~~~v~v~D~~t~   95 (243)
T 3mbr_X           29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW-----RNHEGFVYDLATL   95 (243)
T ss_dssp             ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES-----SSSEEEEEETTTT
T ss_pred             ECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEEE-----CCCEEEEECCCCC
T ss_conf             899999979998857899998999959999988987437999683997999992-----2897999728885


No 245
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=24.45  E-value=28  Score=13.39  Aligned_cols=32  Identities=16%  Similarity=0.075  Sum_probs=22.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             6654046899999999985310053332255046666
Q gi|254780836|r  212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE  248 (674)
Q Consensus       212 PaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin  248 (674)
                      .+||+||++.-...++++..+.     ...++|.|-.
T Consensus       175 ~~vG~Gg~~~Gi~~~lk~~~~~-----~~~ii~vep~  206 (303)
T 1o58_A          175 AGVGTGGTISGVGRVLKGFFGN-----GVKIVAVEPA  206 (303)
T ss_dssp             EECSSSHHHHHHHHHHHHHHGG-----GSEEEEEEET
T ss_pred             EECCCCHHHHHHHHHHHHHCCC-----CCEEEEEECC
T ss_conf             9668015378999999997599-----9889999428


No 246
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics, PSI, MCSG, protein structure initiative; HET: GOL; 2.20A {Streptococcus thermophilus lmg 18311}
Probab=23.57  E-value=29  Score=13.28  Aligned_cols=52  Identities=10%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCC---CEEEEEEECCCCCCCCCCEEEEECHHHHHH
Q ss_conf             89999998849468883176776557886---169999946887434883899723677657
Q gi|254780836|r  375 SEIRRWLLENDLIEAIVALPTDLFFRTNI---ATYLWILSNRKTEERRGKVQLINATDLWTS  433 (674)
Q Consensus       375 s~IRk~lie~d~ieaII~LP~~lFynTgI---~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~  433 (674)
                      .++|++|-++++=-.+|.=|.|+||=||.   +.++ +++.+      +-+++.|.......
T Consensus         9 ~~lr~~m~~~~lD~~li~~~~ni~Yltg~~~~~~~l-li~~~------~~~l~~~~r~~~~a   63 (131)
T 3il0_A            9 ERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTNATV-FITKN------RRLFLTDSRYTLIA   63 (131)
T ss_dssp             HHHHHHHHHHTCSEEEECSHHHHHHHHSCCCSSEEE-EEESS------CEEEEECTTSHHHH
T ss_pred             HHHHHHHHHCCCCEEEECCHHHHHHHHCEECCCEEE-EEECC------CCEEEEECHHHHHH
T ss_conf             999999998699999986789823433204257799-99689------86799841467999


No 247
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=22.57  E-value=30  Score=13.15  Aligned_cols=20  Identities=40%  Similarity=0.599  Sum_probs=9.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHH
Q ss_conf             66665017998989999999
Q gi|254780836|r  638 NRFFYQYQPSRKLQDIDAEL  657 (674)
Q Consensus       638 ~r~FY~y~~~r~l~ei~~~i  657 (674)
                      ||.-|+.+.--.|+.|.+.+
T Consensus        10 nrvayklkenaklenivarl   29 (56)
T 3he4_A           10 NRVAYKLKENAKLENIVARL   29 (56)
T ss_dssp             -CCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHH
T ss_conf             99999998510599999999


No 248
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=22.18  E-value=31  Score=13.10  Aligned_cols=29  Identities=17%  Similarity=0.095  Sum_probs=20.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             66540468999999999853100533322550466
Q gi|254780836|r  212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE  246 (674)
Q Consensus       212 PaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE  246 (674)
                      -++||||.++-...++++.++..      .++|-|
T Consensus       183 ~~vG~GG~~~Gi~~~lk~~~~~~------~vv~Ve  211 (325)
T 3dwg_A          183 AGLGTTGTLMGTGRFLREHVANV------KIVAAE  211 (325)
T ss_dssp             EECSSSHHHHHHHHHHHHHSTTC------EEEEEE
T ss_pred             EEECHHHHHHHHHHHHHHHCCCC------EEEEEC
T ss_conf             98683888999999899759998------899978


No 249
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=21.99  E-value=31  Score=13.08  Aligned_cols=60  Identities=13%  Similarity=0.193  Sum_probs=38.0

Q ss_pred             CCCCC-CCCCEEEEEEECCC----CCCCCCCEEEEE------------CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             76557-88616999994688----743488389972------------36776576404664420698999999999972
Q gi|254780836|r  396 DLFFR-TNIATYLWILSNRK----TEERRGKVQLIN------------ATDLWTSIRNEGKKRRIINDDQRRQILDIYVS  458 (674)
Q Consensus       396 ~lFyn-TgI~t~Iwil~k~K----~~~rkgkV~lID------------As~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~  458 (674)
                      |+||| .++.-.+++.....    ..+++|+|-.|-            ||+..   ...|+..-.|++++++.+.+....
T Consensus         2 ~~fyN~~~~gdvL~~~~~~~~~~~~~e~~~~v~~i~~~~~~~g~Nif~~s~~~---~~~~~g~i~l~~~~i~~l~~~l~~   78 (199)
T 3bu2_A            2 NLFYNKEAVGDVAFLQINPTEGEYNYVTQGDVVEIQNDGEVVGYNIFNASNKA---TLTGNGHIKLTETLVQAFQKAIEA   78 (199)
T ss_dssp             EEEEETTTTEEEEEEECCCCCCCEEEEEETTEEEEEETTEEEEEEEETGGGTS---CCC---CCCCCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCEEEEEECCCCCCCCEEEECCEEEECCCCEEEEEEEECCCCCC---CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             25746755896799995698630031660878999018918899874012221---226786212699999999999987


No 250
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase/DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=21.97  E-value=18  Score=14.58  Aligned_cols=11  Identities=18%  Similarity=0.528  Sum_probs=7.7

Q ss_pred             EEEEEECCCCC
Q ss_conf             89998168567
Q gi|254780836|r  292 FHYCLSNPPFG  302 (674)
Q Consensus       292 FD~vlaNPPFg  302 (674)
                      -|+|-..|||-
T Consensus       165 ~~fvYlDPPY~  175 (259)
T 1yf3_A          165 GDFVYVDPPYL  175 (259)
T ss_dssp             TEEEEECCCCT
T ss_pred             CEEEEECCCCC
T ss_conf             61899789876


No 251
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=21.72  E-value=31  Score=13.04  Aligned_cols=99  Identities=13%  Similarity=0.047  Sum_probs=57.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      ..|++.....++-.|.+.|          .+.+..+|++--||||= +++..-++   .        ...+..|..+...
T Consensus        55 ~~~~~is~P~~~A~~l~~L----------~~~~g~~VLeIGsGtGY-~tAlla~l---~--------~~v~~ve~~~~~~  112 (210)
T 3lbf_A           55 GQGQTISQPYMVARMTELL----------ELTPQSRVLEIGTGSGY-QTAILAHL---V--------QHVCSVERIKGLQ  112 (210)
T ss_dssp             TTSCEECCHHHHHHHHHHT----------TCCTTCEEEEECCTTSH-HHHHHHHH---S--------SEEEEEESCHHHH
T ss_pred             CCCCEECCCHHHHHHHHHC----------CCCCCCEEEEECCCHHH-HHHHHHHH---H--------CEECCCCCCHHHH
T ss_conf             8981754436747678756----------56899879996784069-99999986---2--------8325454222899


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             9999998980887533456666823475457999866418999816856
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF  301 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF  301 (674)
                      ..++.++--.+...       ..+..||-.. ..-....||.|+.+-..
T Consensus       113 ~~a~~~~~~~~~~n-------v~~~~gdg~~-g~~~~~pyD~Iiv~~a~  153 (210)
T 3lbf_A          113 WQARRRLKNLDLHN-------VSTRHGDGWQ-GWQARAPFDAIIVTAAP  153 (210)
T ss_dssp             HHHHHHHHHTTCCS-------EEEEESCGGG-CCGGGCCEEEEEESSBC
T ss_pred             HHHHHHHHHHCCCC-------CEEEECCCCC-CCCCCCCCCEEEEEECC
T ss_conf             99999988626667-------1799857776-77556980379996412


No 252
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=20.66  E-value=33  Score=12.90  Aligned_cols=28  Identities=11%  Similarity=-0.006  Sum_probs=14.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             76114438999999999862276657536817
Q gi|254780836|r  150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR  181 (674)
Q Consensus       150 v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR  181 (674)
                      |....+..+-|-||.-+++.    .|..|||-
T Consensus        98 V~~~~f~~~g~~ll~~l~~~----lg~~~t~e  125 (146)
T 2aa1_B           98 VDPDNFKLLADCLTIVVAAR----FGSAFTGE  125 (146)
T ss_dssp             CCTHHHHHHHHHHHHHHHHH----HGGGSCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH----CCCCCCHH
T ss_conf             98389999999999999987----67307899


Done!