BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62] (674 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62] gi|254040513|gb|ACT57309.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 674 Score = 818 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 674/674 (100%), Positives = 674/674 (100%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL Sbjct: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF Sbjct: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP Sbjct: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL Sbjct: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP Sbjct: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL Sbjct: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG Sbjct: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV Sbjct: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI Sbjct: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ Sbjct: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV Sbjct: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 Query: 661 EAQIATLLEEMATE 674 EAQIATLLEEMATE Sbjct: 661 EAQIATLLEEMATE 674 >gi|121997946|ref|YP_001002733.1| N-6 DNA methylase [Halorhodospira halophila SL1] gi|121589351|gb|ABM61931.1| N-6 DNA methylase [Halorhodospira halophila SL1] Length = 659 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 291/674 (43%), Positives = 410/674 (60%), Gaps = 20/674 (2%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + + +A FIW A+ L GD K + +G+VILPFTLLRRLEC LEPT+ V Sbjct: 2 NTENHSQMAGFIWSVADLLRGDLKQSQYGRVILPFTLLRRLECVLEPTKEQVLAAAKEHA 61 Query: 64 GS--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + A F+NTS +L TL T T ++L SY+ SFS +A+ +FE F+F Sbjct: 62 DKPLGVRERLLRRAADQPFFNTSPLTLGTLSDTQTADDLMSYVQSFSPDAREVFEHFNFE 121 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L LLY++ + F+ ++L P + + M +I+E LIR+F +E A + TPR Sbjct: 122 DFVQQLSANNLLYQVVQRFAAMDLSPGRISNFGMGSIFEELIRKFAESSNETAGEHFTPR 181 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 DVVHL T+L+L D P + T+YDP GTGGFL+++ ++ + + Sbjct: 182 DVVHLTTSLVLTDQDDKL--QPHSVVTVYDPAAGTGGFLSESDAYIQQVSDN----VTVS 235 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 HGQEL PE++A+C A MLI+ +NI+ G+TLS D G+RF + L+NPPF Sbjct: 236 LHGQELNPESYAICKADMLIKG-------QQVENIKLGNTLSDDELAGERFDFMLANPPF 288 Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G +W+K + V EHK G GRFGPGLP++SDGS+LFL+HL +K+ P GG R I+L Sbjct: 289 GVEWKKVQKQVTDEHKRWGYNGRFGPGLPRVSDGSLLFLLHLVSKVRDPREGGSRIGIIL 348 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + SPLF G AGSGESEIRR+LLE DL+EAIVALPTD+F+ T IATY+WILSN K ERRG Sbjct: 349 NGSPLFTGGAGSGESEIRRFLLERDLVEAIVALPTDMFYNTGIATYVWILSNDKPPERRG 408 Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 +VQLINAT+ ++ +R G KR+ I+D I+ +Y + E + S++ FGYRRI Sbjct: 409 RVQLINATERYSKMRKSLGSKRQYIDDTNIDNIVRLYGAFEESEESKLFPVAEFGYRRIT 468 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 V RPLR++F + + R+ + +KL Q+ L + M Q+ + + Sbjct: 469 VERPLRLNFQASEERIRRILDEKPIQKLDEDTQARLLAACEAMDGQM---LYRDRQAFTR 525 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 + +VK + A +NA +DP A P TD G PDT+L ++ENVP ES+ Sbjct: 526 DLKRALEEREVKLGAPPMKAVLNALSERDPEAKPCTDAKGNPEPDTSLRDHENVPLTESV 585 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF REV PHVPDA+ID+ D +D E+G VGYEI FNR FY++ P R L++IDA+LK Sbjct: 586 YDYFEREVRPHVPDAWIDEAKRDAQDGEVGIVGYEIPFNRHFYKFTPPRPLEEIDADLKV 645 Query: 660 VEAQIATLLEEMAT 673 +I ++EE++ Sbjct: 646 CTDRIKRMIEELSA 659 >gi|152973655|ref|YP_001338695.1| putative type I restriction-modification system DNA methylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958437|gb|ABR80465.1| putative type I restriction-modification system DNA methylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 684 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + Sbjct: 10 MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 69 Query: 61 AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 AF ++++L++ ++ A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+ Sbjct: 70 AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 129 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT Sbjct: 130 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 189 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+ KIPP+ Sbjct: 190 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 249 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP Sbjct: 250 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 309 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV Sbjct: 310 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 369 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+ Sbjct: 370 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 429 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G SRMLDYRTFGYRRI+ Sbjct: 430 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 489 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 VLRPLRM+ LDK G+ RLEA+ W KLS HQ+FW + LKP++ Q PY WAE+FV S Sbjct: 490 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 549 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I Sbjct: 550 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 609 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK Sbjct: 610 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 669 Query: 660 VEAQIATLLEEMATE 674 VEA+IA LL E+A+E Sbjct: 670 VEAEIAALLAEVASE 684 >gi|152969515|ref|YP_001334624.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|294496730|ref|YP_003560423.1| putative type I restriction-modification system DNA methylase [Klebsiella pneumoniae] gi|150954364|gb|ABR76394.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|293339439|gb|ADE43993.1| putative type I restriction-modification system DNA methylase [Klebsiella pneumoniae] Length = 675 Score = 799 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + Sbjct: 1 MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 60 Query: 61 AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 AF ++++L++ ++ A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+ Sbjct: 61 AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+ KIPP+ Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 240 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV Sbjct: 301 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+ Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G SRMLDYRTFGYRRI+ Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 480 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 VLRPLRM+ LDK G+ RLEA+ W KLS HQ+FW + LKP++ Q PY WAE+FV S Sbjct: 481 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 540 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I Sbjct: 541 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 600 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK Sbjct: 601 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660 Query: 660 VEAQIATLLEEMATE 674 VEA+IA LL E+A+E Sbjct: 661 VEAEIAALLAEVASE 675 >gi|120553176|ref|YP_957527.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] gi|120323025|gb|ABM17340.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] Length = 661 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 290/677 (42%), Positives = 407/677 (60%), Gaps = 20/677 (2%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EK 58 MT+ + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC LEPT++ V + Sbjct: 1 MTDDQTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + + ++ AG F+N S SL+TL + T ++L SY+ SFS +A+ IFE F Sbjct: 61 EHQAKPDAVREKLLLRAAGQQFFNASPLSLATLSDSQTADDLMSYVQSFSQDAREIFEHF 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F + +L LLY++ + F+ I+L P T+ + M I+E LIR+F +E A + Sbjct: 121 HFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKFAESSNETAGEHF 180 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD+VHL T+L+L + P I T+YDPT GTGGFL++ ++ Sbjct: 181 TPRDIVHLTTSLVLTGQEGRLT--PNSIVTIYDPTAGTGGFLSEGDEYIQQ----ISESV 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + HGQEL PE++A+C A MLI+ E NI+ G+TLS D +F LSN Sbjct: 235 TVSLHGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSDDQLATNKFDLMLSN 287 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG +W+K + V EHK G GRFGPGLP++SDGS+LFLMHL +K+ GG R Sbjct: 288 PPFGVEWKKVQKQVTDEHKHRGFDGRFGPGLPRVSDGSLLFLMHLVSKMRDAREGGSRIG 347 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+TY+W+LSN K E Sbjct: 348 IILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGISTYVWVLSNNKPAE 407 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 RRGKVQLI+ATD T +R G KR+ +++ + +I+ +Y + K S++ FGYR Sbjct: 408 RRGKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKKSKIFPIEAFGYR 467 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 RI V RPL+++F + +AR+ + K+ Q + M + + Sbjct: 468 RITVERPLQLNFQTSEERIARIADEKAILKMDQEDQGNIHAACRAMNAKT---VYRNRKQ 524 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + +V + + +NA +DP AD TD G DT L +YENVP Sbjct: 525 FQKALKASLTDHQVYLGAPQLKSLLNALSERDPEADICTDSKGNPEADTGLRDYENVPLS 584 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ES+ DYFVREV PHVPDA+ID+ DEKD E+G VG+EI FNR FY++ P R L++IDA+ Sbjct: 585 ESVYDYFVREVKPHVPDAWIDESKRDEKDGEVGIVGFEIPFNRHFYEFTPPRPLEEIDAD 644 Query: 657 LKGVEAQIATLLEEMAT 673 LK +I ++EE++ Sbjct: 645 LKQCTDRIKQMIEELSA 661 >gi|332975486|gb|EGK12376.1| N-6 DNA methylase [Desmospora sp. 8437] Length = 684 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 278/693 (40%), Positives = 391/693 (56%), Gaps = 40/693 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + + NFIW AE L GD+K +++GKV+LPFT+LRRL+C L PT++ V K Sbjct: 10 MSDQLTNFSEKTNFIWSIAEILRGDYKQSEYGKVVLPFTVLRRLDCVLSPTKAQVLAKME 69 Query: 61 AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAI 114 G +D E V F NTS + TL N NL++YI FS A+ I Sbjct: 70 EIQGMGLDPEQAEPVLTSVTDERFCNTSPFDFQTLKAEPDNLAENLKAYIRGFSREARDI 129 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + F+F I RLE+A LLY + + F+ I+LHPD V + M I+E LIRRF + +E A Sbjct: 130 IDYFNFHVQIDRLEEADLLYLVVERFAAIDLHPDRVSNLEMGYIFEELIRRFSEQSNETA 189 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR+V+ L LL + D+ G+IRTLYDP CGTGG L+ A ++ + Sbjct: 190 GEHFTPREVIRLMVNLLFNEDEEGELNRKGIIRTLYDPACGTGGMLSVAEEYLKELNDQA 249 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 ++ GQEL E++A+C A ML++ + I+ G++ + D ++F Y Sbjct: 250 QLK----VFGQELNAESYAICKADMLLKGQDP-------SRIKFGNSFTHDGLAHEKFDY 298 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG +W+K + A+E EHK G GRFG GLP++SDGS+LFL H+ +K++ P GG Sbjct: 299 MLSNPPFGVEWKKVQRAIEDEHKQQGYAGRFGAGLPRVSDGSLLFLQHMISKMKSPEEGG 358 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 R AIV + SPLF G A SGES IRRW++END +EAIVALP LF+ T I+TY+WI++NR Sbjct: 359 SRLAIVFNGSPLFTGGAESGESNIRRWIIENDWLEAIVALPDQLFYNTGISTYVWIVTNR 418 Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K R+GK+QLIN + ++R G KR + D +I I+ GK+S++ D Sbjct: 419 KRPARKGKIQLINGVKFFQTMRKSLGNKRHELGQDHIDEISRIHGEFREGKYSKIFDNAD 478 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDIL 519 FGYRRI V RPLR+ + + G+ RL ++ L+ + IL Sbjct: 479 FGYRRITVERPLRLRIQVTEKGIQRLTEQTPFQNLAKSRKKGAAGEKEIADGKAQQEAIL 538 Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579 K + + + + K VK + S A + A G +D A D G Sbjct: 539 KTLGGMVTEKVYTDRDAFLKELKGVFKEQGVKLTASIQKAILAACGERDETAQVCKDSKG 598 Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639 PD L +YENVP E I DY REV PHVPDA+I D+E +VGYEI F R Sbjct: 599 NVEPDPELRDYENVPLKEEIHDYMEREVKPHVPDAWI--------DEEKTKVGYEIPFTR 650 Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 FY+Y+P R L++IDAE++ +E +I +L E+A Sbjct: 651 HFYEYKPLRPLEEIDAEIQALEKEILGMLGEIA 683 >gi|78357909|ref|YP_389358.1| type I restriction-modification system DNA methylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220314|gb|ABB39663.1| type I restriction-modification system DNA methylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 675 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 528/675 (78%), Positives = 589/675 (87%), Gaps = 1/675 (0%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE Y Sbjct: 1 MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYA 60 Query: 61 AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 F ++++L++ ++ A Y F+NTSEYSL TLGST TR NLE YIA FSDNA+AIFE+FD Sbjct: 61 TFKDADVELDTILRSTAEYPFFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFD 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F +T+ RLEKAGLLYKIC+NF+ I+LHP+ VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G K+PP+ Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV 240 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFGKKWEKDK+AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV Sbjct: 301 PFGKKWEKDKNAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 LS SPLFNG A SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+ Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 GKVQLINATDLWTSIRNEG KRRI++DDQRRQILDIY + E SRMLDYRTFGYRRIK Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK 480 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 VLRPLRM LDK G+ RLEAD W KL HQ+FW + LKP++ Q YGWAE+F K++ Sbjct: 481 VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDT 540 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 IKS+EAK LKVKA+K+FI A INAFG KDP A+PVTD NG +PDT+LT+YENVPY+E I Sbjct: 541 IKSDEAKQLKVKANKTFIAALINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDI 600 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF REV PHVPDAY+D+ F D KD ++GRVGYEINFNRFFYQYQP RKL DID +LK Sbjct: 601 DDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660 Query: 660 VEAQIATLLEEMATE 674 VEA+IA LL E+A++ Sbjct: 661 VEAEIAALLAEVASK 675 >gi|120553352|ref|YP_957703.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] gi|120323201|gb|ABM17516.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] Length = 661 Score = 788 bits (2034), Expect = 0.0, Method: Composition-based stats. Identities = 288/677 (42%), Positives = 404/677 (59%), Gaps = 20/677 (2%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EK 58 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC LEPT++ V + Sbjct: 1 MTHDKTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + + ++ A F+N S SL+TL + T ++L SY+ SFS +A+ IFE F Sbjct: 61 EHQTKPDAVREKLLLRAADQQFFNASPLSLATLSDSQTADDLMSYVQSFSQDAREIFEHF 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F + +L LLY++ + F+ I+L P T+ + M I+E LIR+F +E A + Sbjct: 121 HFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKFAESSNETAGEHF 180 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD+VHL T+L+L + P I T+YDPT GTGGFL++ ++ Sbjct: 181 TPRDIVHLTTSLVLTGQENRLT--PNSIVTIYDPTAGTGGFLSEGDEYIQQ----ISESV 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + HGQEL PE++A+C A MLI+ E NI+ G+TLS D +F LSN Sbjct: 235 TVSLHGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSDDQLATNKFDLMLSN 287 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG +W+K + V EHK G GRFGPGLP++SDGS+LFLMHL +K+ GG R Sbjct: 288 PPFGVEWKKVQKQVTDEHKHRGFAGRFGPGLPRVSDGSLLFLMHLVSKMRDAREGGSRIG 347 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+TY+W+LSN K E Sbjct: 348 IILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGISTYVWVLSNNKPAE 407 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+ KVQLI+ATD T +R G KR+ +++ + +I+ +Y + K S++ FGYR Sbjct: 408 RKSKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKKSKIFPIEAFGYR 467 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 RI V RPL+++F + L R+ + +K+ Q L + M + + Sbjct: 468 RITVERPLKLNFQTSEERLQRIADEKAIQKMDQEDQDKILAACRAMDAE---KVYRNRKQ 524 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + +V S + A +NA +DP AD TD G DT L +YENVP Sbjct: 525 FQKALKTSLTDHQVYLSAPQLKALLNALSERDPEADICTDSKGNPEADTGLRDYENVPLS 584 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ES+ DYF REV PHVPD +ID+ DEKD E+G VG+EI FNR FY++ P R L++IDA+ Sbjct: 585 ESVYDYFEREVKPHVPDVWIDESKRDEKDGEVGIVGFEIPFNRHFYEFTPPRPLEEIDAD 644 Query: 657 LKGVEAQIATLLEEMAT 673 LK +I ++EE++ Sbjct: 645 LKQCTDRIKQMIEELSA 661 >gi|220933788|ref|YP_002512687.1| type I restriction-modification system, M subunit; N-6 adenine-specific DNA methylase [Thioalkalivibrio sp. HL-EbGR7] gi|219995098|gb|ACL71700.1| type I restriction-modification system, M subunit; N-6 adenine-specific DNA methylase [Thioalkalivibrio sp. HL-EbGR7] Length = 655 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 296/675 (43%), Positives = 407/675 (60%), Gaps = 29/675 (4%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + ++ A+F+W A+ L GDFK + +G++ILPFTLLRRLEC L PT+ AV +Y Sbjct: 1 MPENFSTTASFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLAPTKQAVLAEYDKRK 60 Query: 64 GSNIDLESFVKVA--GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 S++ + F++ A G FYNTS L++LG T +NL++YI SFS A+ IFE F F Sbjct: 61 DSDLPMGPFLEKASGGLKFYNTSPMDLASLGETQVLDNLDTYIRSFSPAAREIFEHFGFH 120 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L++A LLY++ + F+ +L P + M I+E LIRRF +E A + TPR Sbjct: 121 GFLEKLDEANLLYQVIQRFASTDLSPQAHSNYEMGLIFEELIRRFAESSNETAGEHFTPR 180 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+VHL TALL +PG I T+YDPT GTGGFL++ ++ ++ Sbjct: 181 DIVHLTTALLFTDQQEKI--APGKIVTVYDPTAGTGGFLSEGEEYIHSISQDARV----R 234 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 GQEL PE+HA+C+A MLI+ E D NI+ G+TLS D ++F + LSNPPF Sbjct: 235 VFGQELNPESHAICMADMLIKGHEID-------NIKLGNTLSDDQLPAQQFDFMLSNPPF 287 Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G W+K + V+ EHK G GRFGPGLP++SDGS+LFLMHL +K+ G R I+L Sbjct: 288 GVDWKKVQKQVQDEHKLKGHAGRFGPGLPRVSDGSLLFLMHLMSKMRDAKEQGSRIGIIL 347 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + SPLF G AGSGESEIRR +LENDL+EAIVALPTD+F+ T IATY+W+LSN K ER+G Sbjct: 348 NGSPLFTGGAGSGESEIRRHILENDLLEAIVALPTDMFYNTGIATYVWVLSNHKRPERKG 407 Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 +VQLINATD+ +R G KR+ + +D I+ +Y + E + S++ + FGYRRI Sbjct: 408 RVQLINATDMGDKMRKSLGSKRKYLTEDSIETIVRLYGAFEETETSKIFNTTDFGYRRIT 467 Query: 480 VLRPLRMSFIL-DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 V RPL+++F D+T LA L+AD W KL + LD L + + + Sbjct: 468 VERPLQLAFHPKDETRLAALQADKGWEKLDKALRQAILDALPRFEE--------DKILSR 519 Query: 539 SIKSNEAKTL--KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 S K G D +A+ G+ P+ +L + ENVP Sbjct: 520 STFKKWLKVHMNGATLPAPAFKLLQKHLGEHDDQAEVC-KTKGQPEPNPDLRDNENVPLG 578 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 E I YF REV+PHVPDA+ID+ DE+D ++G VGYEI FNR FYQY P R L++IDA+ Sbjct: 579 EDIHAYFAREVTPHVPDAWIDESKKDEQDGQVGIVGYEIPFNRHFYQYVPPRPLEEIDAD 638 Query: 657 LKGVEAQIATLLEEM 671 L V +I LL+E+ Sbjct: 639 LDQVSREIMALLQEV 653 >gi|282901857|ref|ZP_06309763.1| Type I restriction-modification system protein [Cylindrospermopsis raciborskii CS-505] gi|281193253|gb|EFA68244.1| Type I restriction-modification system protein [Cylindrospermopsis raciborskii CS-505] Length = 676 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 275/690 (39%), Positives = 398/690 (57%), Gaps = 31/690 (4%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M F +FIW A+ + FK + VILPFT+LRRL+C LEPT+ V E Y Sbjct: 1 MENFGEK----VSFIWSVADLIRDTFKRGKYQDVILPFTVLRRLDCVLEPTKVEVLEAYN 56 Query: 61 AFGGSNIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 + +L+ K +G++FYNTS Y L + NL+ YI SFS N + + E Sbjct: 57 KYKDDLDNLDPQLCKKSGFAFYNTSRYYFEKLLDDPKHLTANLKLYINSFSGNMREVLEK 116 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 FDF +TI +LE++ LL+ + + F I+LHPD V + M I+E LIR+F + E + Sbjct: 117 FDFPNTIDKLEQSDLLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEH 176 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L L+ D A + RT+YDP CG+GG LT A + + + + Sbjct: 177 FTPREVIQLMVNLIFSQDKAQLS-QEYITRTVYDPCCGSGGMLTSAKDRILELNPKADVF 235 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQE+ PET A+C + + ++ ++ ++NI+ GSTLS D + K F Y L+ Sbjct: 236 ----LFGQEVNPETFAICKSDLYMKSVD----GRDAENIKFGSTLSNDQHSDKTFDYLLA 287 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+GK W++DKDAVE E + RF G P+ISDG +LFL + ++++ GG R A Sbjct: 288 NPPYGKDWKRDKDAVEAEAQKAG-SRFSAGTPRISDGQLLFLQQMLSRMKGVEQGGSRVA 346 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IV++ SPLF G AGSGESEIRRW+LEND +EAIVALP LF+ T IATY+W+L+N K +E Sbjct: 347 IVMNGSPLFTGDAGSGESEIRRWILENDWLEAIVALPEQLFYNTGIATYIWVLTNHKAKE 406 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+GKVQLINA+D W +R G KRR I +Q ++I I+ S + S++ D FGYR Sbjct: 407 RKGKVQLINASDFWVPMRKSLGSKRREIKSEQIQEITKIFESFAPSEVSKIFDSEDFGYR 466 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMM 523 ++ V RPL+++F + RL+ + L+ + ++ M+ Sbjct: 467 KVTVERPLKLNFQASPERIERLKEQSAFVALAVSKKKSAEGKAIEEHAGRDQQKLILAML 526 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Q + + + E + K+ V + A + A +D A +D G P Sbjct: 527 QTLPDTLYKDREQFEKVLKKAIKSEGVTVAAPVYKAILTALSERDETAKVCSDRQGNPEP 586 Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 D+ L + ENVP E + +YF REV+PHVPDA+I + D KD EIG+VGYEINFNR+FY+ Sbjct: 587 DSELRDTENVPLKEDVAEYFEREVTPHVPDAWISEGVRDAKDGEIGKVGYEINFNRYFYK 646 Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 YQP R L++I+A++K VE +I +L E+A Sbjct: 647 YQPPRALEEIEADIKAVEGEILEMLREVAG 676 >gi|152998551|ref|YP_001355472.1| N-6 DNA methylase [Shewanella baltica OS185] gi|151367565|gb|ABS10564.1| N-6 DNA methylase [Shewanella baltica OS185] Length = 675 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 520/675 (77%), Positives = 589/675 (87%), Gaps = 1/675 (0%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTEF+GSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALE TR VRE Y Sbjct: 1 MTEFSGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALESTREVVREAYD 60 Query: 61 AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 F + ++L+ ++ AGY FYNTSEYSLSTLGST TR NLE YI+ FSDNA+AIFE+F+ Sbjct: 61 NFKDAEVELDPILRQTAGYPFYNTSEYSLSTLGSTKTRRNLEDYISLFSDNARAIFEEFE 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F +TI RLEKAGLL+ ICKNF+GI+LHPDTVPDRVMSNIYEHLIRRFG+EV+EGAEDFMT Sbjct: 121 FGNTIIRLEKAGLLFTICKNFAGIDLHPDTVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRDVVHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHVAD G+H+KIPP+ Sbjct: 181 PRDVVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVADYGNHYKIPPV 240 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI QGSTLS D F G RFHYCLSNP Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNILQGSTLSNDQFAGDRFHYCLSNP 300 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFGKKWEKDK AVE+EHK GELGRFGPGLP+I+DGSMLFLMHLA+KLELP NGGGRAAIV Sbjct: 301 PFGKKWEKDKTAVEREHKQGELGRFGPGLPRINDGSMLFLMHLASKLELPKNGGGRAAIV 360 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 LS SPLFNG AGSGESEIRRWLLENDL+EAIVALPTD+FFRTNIATYLWILSN+KT+ R+ Sbjct: 361 LSGSPLFNGGAGSGESEIRRWLLENDLVEAIVALPTDIFFRTNIATYLWILSNKKTDNRK 420 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 GKVQLINATDLWT I+NEG KRRI+ DDQRRQILDIY + EN S+M+DY+ FGYRRIK Sbjct: 421 GKVQLINATDLWTPIKNEGNKRRIVGDDQRRQILDIYAAAENDALSKMVDYQVFGYRRIK 480 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 VLRPLRM+ LD+ GL+ LEA TW+KL H++FW + +KP + + Y WAE+F KE+ Sbjct: 481 VLRPLRMTLKLDEQGLSTLEATDTWQKLPVEHKAFWREAIKPQLGETKEYIWAETFTKET 540 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 K+ +AK LKVK +K+FI A I AFG+ DP A+PV D G +PDT+LT+YENVPYL+SI Sbjct: 541 AKTPDAKLLKVKGNKTFITALIAAFGKNDPDAEPVIDAQGNIVPDTDLTDYENVPYLDSI 600 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 QDYF REV PH PDAYID+ FID++DK++GRVGYEINFNRFFYQYQP RKL DIDAELK Sbjct: 601 QDYFAREVLPHAPDAYIDESFIDDRDKQLGRVGYEINFNRFFYQYQPPRKLHDIDAELKE 660 Query: 660 VEAQIATLLEEMATE 674 VE++IA LL E+ATE Sbjct: 661 VESEIAALLAEVATE 675 >gi|327479500|gb|AEA82810.1| N-6 DNA methylase [Pseudomonas stutzeri DSM 4166] Length = 660 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 280/676 (41%), Positives = 398/676 (58%), Gaps = 23/676 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61 T + + A F+W A+ L GDFK + +G++ILPFTLLRR+EC LEPT+ AV + Sbjct: 2 NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKEAVIRESYAQE 61 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + ++ AG F+N S+ +L TL T T +L SY+ SFS +A+ IFE F F Sbjct: 62 GRPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFE 121 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L A LLY++ + F+ +L P+ + + M I+E LIR+F +E A + TPR Sbjct: 122 DFVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+VHL T+L++ D K P I T+YDPT GTGGFL++ ++ + Sbjct: 182 DIVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQS----ISQQVTVS 235 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299 HGQEL PE++A+C A MLI+ + +NI+ G+TLS D TG F + LSNP Sbjct: 236 LHGQELNPESYAICKADMLIKGQKV-------ENIKLGNTLSDDQLTGAEHHFDFMLSNP 288 Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG +W+K + + EH + G GRFGPGLP++SDGS+LFL+HL +K+ P GG R I Sbjct: 289 PFGVEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGI 348 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +L+ SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K ER Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAER 408 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GKVQLI+ + + +R G KR+ I D+Q +++ +Y E S++ FGYRR Sbjct: 409 QGKVQLIDGSQHFGKMRKSLGSKRQYITDEQIDELVRLYGRFEETAQSKIFPVEAFGYRR 468 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 I V RPLR++F + ++ + KL + ++ L+ M + Sbjct: 469 ITVERPLRLNFQTSAERIEKVLEEKAIEKLEAPARQRLIEALQAMDANVLH---RNREQF 525 Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597 + V S + A +NA +DP AD V G+ D L + ENVP E Sbjct: 526 SKLLKKTLSAHDVSPSTPELKAILNALSERDPEADICL-VKGKPEADAGLRDNENVPLGE 584 Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657 S+ DYF REV PHVPDA+ID+ D +D E+G VG+EI FNR FY +QP R L DID +L Sbjct: 585 SVYDYFEREVKPHVPDAWIDESKTDAQDGEVGVVGFEIPFNRHFYVFQPPRPLADIDRDL 644 Query: 658 KGVEAQIATLLEEMAT 673 K +I ++E ++ Sbjct: 645 KACTDRIKQMIEGLSA 660 >gi|77166145|ref|YP_344670.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707] gi|254436238|ref|ZP_05049745.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27] gi|76884459|gb|ABA59140.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707] gi|207089349|gb|EDZ66621.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27] Length = 661 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 280/677 (41%), Positives = 397/677 (58%), Gaps = 24/677 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LA 61 T + + A F+W A+ L GDFK + +G++ILPFTLLRR+EC LEPT+ V ++ Sbjct: 2 NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKDKVVQQATVHQ 61 Query: 62 FGGSNIDLESFVKVAG-YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 ++ + AG F+N S +L TL T T +L SY SFS +A IFE F+F Sbjct: 62 HKPDHVREMLLRRAAGDLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 121 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + +L A LLY++ + F+ +L P + + M I+E LIRRF +E A + TP Sbjct: 122 ENFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTP 181 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 RD+VHL T+L++ D +P I T+YDPT GTGGFL++ ++ + Sbjct: 182 RDIVHLTTSLVITGQDDKL--APNRIVTIYDPTAGTGGFLSEGDEYIQS----ISEKVSV 235 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCLSN 298 HGQEL PE++A+C A MLI+ + NI+ G+TLS D RF + LSN Sbjct: 236 SLHGQELNPESYAICKADMLIKGQDV-------ANIKLGNTLSNDQLTGPEHRFDFMLSN 288 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG +W+K + + EHK G GRFGPGLP++SDGS+LFL+HL +K+ P +GG R Sbjct: 289 PPFGVEWKKVQKQITGEHKHKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIG 348 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L+ SPLF G AGSGESEIRR+LL++DL+EAIVALPTD+F+ T IATY+W+LSN K E Sbjct: 349 IILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIVALPTDMFYNTGIATYVWLLSNHKPAE 408 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 RRGKVQLI+ + + +R G KR+ + +Q +++ +Y + E S++ FGYR Sbjct: 409 RRGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVCLYGAFEETPQSKIFPINAFGYR 468 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 RI V RPLR++F + + + +KL + D L M + Sbjct: 469 RITVERPLRLNFQASAERIDNVLQEKAIQKLDDTARQQLADALGAMD---PSPLYRNREQ 525 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + V S A +N G++DP+AD T G+ PDT L + ENVP Sbjct: 526 FAKLLKKTLTAHGVSLSTPEQKALLNGLGKRDPKADICT-TKGKPEPDTGLRDNENVPLG 584 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ES+ DYF REV PHVPDA+I++ D D E+G VG+EI FNR FY +QP R L++ID + Sbjct: 585 ESVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRD 644 Query: 657 LKGVEAQIATLLEEMAT 673 LK +I ++EE++ Sbjct: 645 LKACTDRIKQMIEELSA 661 >gi|77361018|ref|YP_340593.1| type I restriction-modification system M subunit [Pseudoalteromonas haloplanktis TAC125] gi|76875929|emb|CAI87150.1| putative type I restriction-modification system, M subunit; N-6 Adenine-specific DNA methylase [Pseudoalteromonas haloplanktis TAC125] Length = 684 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 305/699 (43%), Positives = 414/699 (59%), Gaps = 45/699 (6%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT+ + +S A F+W A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV EKY Sbjct: 1 MTDN--NFSSTAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPAVLEKYE 58 Query: 61 AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 A I+ + A SFYNTS+ L+ LG T+ +NLESYI SFS NA+ IFE F Sbjct: 59 AVKAMPIEAQDKLLTHAAQLSFYNTSKMDLNRLGETDVASNLESYIQSFSPNAREIFEHF 118 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF +TI +L +A LLYK+ K F+ +LHPD + + M ++E LIRRF +E A + Sbjct: 119 DFFNTIDKLAEADLLYKVAKRFATTDLHPDVINNYGMGLVFEELIRRFAESSNETAGEHF 178 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD+V L T+L+ DD +S G++R++YDPT GTGGFL+ M +V + Sbjct: 179 TPRDIVRLTTSLVFTNDDDALTQS-GLVRSIYDPTAGTGGFLSSGMEYVLELNDKA---- 233 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 L GQEL PE++A+C A MLI+ + D NI+ G+TLS D ++F Y LSN Sbjct: 234 SLSAFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRTEKFDYMLSN 286 Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG W+K + + EH G GRFG GLP++SDGS+LFLMHL +K+ GG R Sbjct: 287 PPFGVDWKKIQKQINDEHTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPQHEGGSRIG 346 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L+ SPLF G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+W+LS K Sbjct: 347 IILNGSPLFTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWVLSTHKPAN 406 Query: 418 RRGKVQLINATD-----------------------LWTSIRN-EGKKRRIINDDQRRQIL 453 R+GKVQLINA + ++R G KR+ + +D I+ Sbjct: 407 RKGKVQLINAAKERAKTGGRGRSGGGESTEEVENVFYAAMRKSLGSKRKELTEDAIDTIV 466 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQ 512 Y FS++ DY+ FGYRRI V RPL+++ + D+ + L D W KL+ Q Sbjct: 467 KTYGQFVENDFSKIFDYQEFGYRRITVERPLQLAVYPKDELRITALTTDKAWDKLNEHAQ 526 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 L L + Y + F+K E T VK S + + + D A+ Sbjct: 527 HSILAALASL--NNDKYLSRDVFLKALTTELETATPSVKLSAAQLKLIVKHLSEHDDEAE 584 Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632 G+ + +L + ENVP ES+ DYF REV PHVP+A+ID DE+DKE+G VG Sbjct: 585 VC-KTKGKIEANPDLRDNENVPLTESVDDYFAREVLPHVPNAWIDTKKTDEQDKEVGIVG 643 Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 YEI FNR FY+Y P R L +IDA+L V ++I LL+E+ Sbjct: 644 YEIPFNRHFYEYVPPRSLTEIDADLDKVSSEIMQLLQEV 682 >gi|146281042|ref|YP_001171195.1| type I restriction-modification system, M subunit, putative [Pseudomonas stutzeri A1501] gi|145569247|gb|ABP78353.1| type I restriction-modification system, M subunit, putative [Pseudomonas stutzeri A1501] Length = 658 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 280/674 (41%), Positives = 396/674 (58%), Gaps = 21/674 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61 T + + A F+W A+ L GDFK + +G++ILPFTLLRR+EC L PT+ V ++ Sbjct: 2 NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLAPTKEEVVKQTFAQE 61 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + ++ AG F+N S +L TL T T +L SY+ +FS +A+ IFE F F Sbjct: 62 GRPDTVREMFLLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQAFSKDAREIFEHFHFE 121 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L A LLY++ + F+ +L P+ + + M I+E LIR+F +E A + TPR Sbjct: 122 DFVQQLASANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+VHL T+L++ D P I T+YDPT GTGGFL++ ++ + Sbjct: 182 DIVHLTTSLVITGQDGKL--QPNSIVTIYDPTAGTGGFLSEGDEYIQS----ISDKVSVS 235 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 HGQEL PE++A+C A MLI+ + +I+ G+TLS D G+RF + LSNPPF Sbjct: 236 LHGQELNPESYAICKADMLIKGQDV-------ASIKLGNTLSDDQLAGQRFDFMLSNPPF 288 Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G +W+K + + EH G GRFGPGLP++SDGS+LFL+HL +K+ P +GG R I+L Sbjct: 289 GVEWKKVQKQITDEHSHKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIIL 348 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + SPLF G AGSGESEIRR+LL+NDL+EAIVALPTD+F+ T IATY+WILSN K R+G Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQNDLVEAIVALPTDMFYNTGIATYVWILSNHKVAARKG 408 Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 KVQLI+ + ++ +R G KR+ I +DQ +++ +Y S E S++ TFGYRRI Sbjct: 409 KVQLIDGSQHYSKMRKSLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIETFGYRRIT 468 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 V RPLR++F + + ++ + KL S LK M + Sbjct: 469 VERPLRLNFQICDERIGKVIEEKLILKLGNDAWSLIQAALKSMDSSVLH---RNREQFSK 525 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 + V S + A +NA +DP AD T G+ D+ L + ENVP ES+ Sbjct: 526 LLKKALTAHSVGLSAPELKALLNALSERDPEADICT-TKGQPEADSGLRDNENVPLGESV 584 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF REV PHVPDA+ID D +D E+G VG+EI FNR FY +QP R L DID +LK Sbjct: 585 FDYFEREVKPHVPDAWIDTSKTDGQDGEVGVVGFEIPFNRHFYVFQPPRSLADIDRDLKA 644 Query: 660 VEAQIATLLEEMAT 673 +I ++E ++ Sbjct: 645 CTDRIKQMIEGLSA 658 >gi|152988798|ref|YP_001345471.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7] gi|150963956|gb|ABR85981.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7] Length = 658 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 273/674 (40%), Positives = 395/674 (58%), Gaps = 21/674 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61 T + + A F+W A+ L GDFK + +G++ILPFTLLRR+EC LEPTR AV + Sbjct: 2 NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTREAVIRESYAQE 61 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + ++ AG F+N S+ +L TL T T +L SY+ SFS +A+ IFE F F Sbjct: 62 GRPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFE 121 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L A LLY++ + F+ +L P+ + + M I+E LIR+F +E A + TPR Sbjct: 122 DFVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+VHL T+L++ D K P I T+YDPT GTGGFL++ ++ + Sbjct: 182 DIVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQS----ISQQVTVS 235 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 HGQEL PE++A+C A MLI+ + +I+ G+TLS D RF + LSNPPF Sbjct: 236 LHGQELNPESYAICKADMLIKGQDV-------TSIKLGNTLSDDQLADSRFDFMLSNPPF 288 Query: 302 GKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G +W+K + + EH + G GRFGPGLP++SDGS+LFL+HL +K+ P GG R I+L Sbjct: 289 GVEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGIIL 348 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K R+G Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAARQG 408 Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 KVQLI+ + + +R G KR+ + ++Q ++ +Y E S++ FGYRRI Sbjct: 409 KVQLIDGSQHFAKMRKSLGSKRQYLTEEQIDALVRLYGRFEETAQSKIFPVEAFGYRRIT 468 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 V RPLR++F + + ++ + KL + ++ L+ M + Sbjct: 469 VERPLRLNFQVSSQRIEKVLEEKAIEKLEAPARQRLIEALQAMDASVVH---RNREQFSK 525 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 + V S + A ++ +D AD V G+ D L + ENVP ES+ Sbjct: 526 LLKKTLSAHDVSPSTPELKAILSGLSERDSEADICM-VKGQPEADAGLRDNENVPLGESV 584 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF REV PHV DA+ID+ DE+D E+G VG+EI FNR FY +QP R L++ID +LKG Sbjct: 585 YDYFEREVKPHVADAWIDESKRDEQDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRDLKG 644 Query: 660 VEAQIATLLEEMAT 673 +I ++E ++ Sbjct: 645 CTDRIKQMIEGLSA 658 >gi|300113141|ref|YP_003759716.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] gi|299539078|gb|ADJ27395.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] Length = 662 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 277/677 (40%), Positives = 393/677 (58%), Gaps = 24/677 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + + A F+W A+ L GDFK + +G++ILPFTLLRR+EC LEPT++ V ++ Sbjct: 3 NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKAKVVQQATVHQ 62 Query: 64 GSNIDLESFV---KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + + +G F+N S +L TL T T +L SY SFS +A IFE F+F Sbjct: 63 HKPDHVREMLLRRAASGLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 122 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + +L A LLY++ + F+ +L P + + M I+E LIRRF +E A + TP Sbjct: 123 ENFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTP 182 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 RD+VHL T+L++ D +P I T+YDPT GTGGFL++ ++ + Sbjct: 183 RDIVHLTTSLVITGQDDKL--APNRIVTIYDPTAGTGGFLSEGDEYIQS----ISEKVSV 236 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCLSN 298 HGQEL PE++A+C A MLI+ + NI+ G+TLS D RF + LSN Sbjct: 237 SLHGQELNPESYAICKADMLIKGQDV-------ANIKLGNTLSNDQLTGPEHRFDFMLSN 289 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG +W+K + + EHK G GRFGPGLP++ DGS+LFL+HL +K+ P +GG R Sbjct: 290 PPFGVEWKKVQKQISGEHKHKGFNGRFGPGLPRVPDGSLLFLLHLVSKMRDPRDGGSRIG 349 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L+ SPLF G AGSGESEIRR+LL++DL+EAI+ALPTD+F+ T IATY+W+LSN K E Sbjct: 350 IILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIIALPTDMFYNTGIATYVWLLSNHKPAE 409 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 RRGKVQLI+ + + +R G KR+ + +Q +++ +Y + E S++ FGYR Sbjct: 410 RRGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVRLYGAFEETPQSKIFPINAFGYR 469 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 RI V RPLR++F + + + +KL + D L M + Sbjct: 470 RITVERPLRLNFQASAARIDNVLREKAIQKLDDTARQQLADALGAMD---PSPLYRNREQ 526 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + V S A +N G +DP AD T G+ PDT L + ENVP Sbjct: 527 FAKLLKKTLTAHGVSLSTPEQKALLNGLGERDPEADICT-TKGKPEPDTGLRDNENVPLG 585 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ES+ DYF REV PHVPDA+I++ D D E+G VG+EI FNR FY +QP R L+ ID + Sbjct: 586 ESVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEAIDRD 645 Query: 657 LKGVEAQIATLLEEMAT 673 LK +I ++EE++ Sbjct: 646 LKACTDRIKQMIEELSA 662 >gi|261212600|ref|ZP_05926884.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC341] gi|260837665|gb|EEX64342.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC341] Length = 679 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 307/699 (43%), Positives = 417/699 (59%), Gaps = 50/699 (7%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + +S+A F+W A+ L GDFK + +G++ILPFTLLRRLEC LE T+ V KY Sbjct: 1 MTNN--NFSSVAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPEVLAKYE 58 Query: 61 AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 I+ + A SFYNTS+ L+ LG T +NLESYI SFS NA+ IFE F Sbjct: 59 TVKAMPIEAQDKLLTHAAKLSFYNTSKMDLNRLGETGVASNLESYIQSFSPNAREIFEHF 118 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF +TI +LE+A LLYK+ K F+ +LHPDT+ + M ++E LIRRF +E A + Sbjct: 119 DFFNTIDKLEEADLLYKVAKRFASTDLHPDTISNYGMGLVFEELIRRFAESSNETAGEHF 178 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD+V L T+LL +D L G++R++YDPT GTGGFL+ M +V Sbjct: 179 TPRDIVELTTSLLFTNEDELTSS--GLVRSIYDPTAGTGGFLSSGMEYVHKLNEKA---- 232 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 L GQEL PE++A+C A MLI+ + D NI+ G+TLS D +F Y LSN Sbjct: 233 SLSAFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRNDKFDYMLSN 285 Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG W+K + + EH + G GRFG GLP++SDGS+LFL+HL +K+ GG R Sbjct: 286 PPFGVDWKKIQKQINDEHTQKGFEGRFGAGLPRVSDGSLLFLLHLISKMRPVSEGGSRIG 345 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L+ SPLF G AGSGESEIRR++LENDL+EAIVALPTD+F+ T IATY+W+LS+ K Sbjct: 346 IILNGSPLFTGGAGSGESEIRRYILENDLLEAIVALPTDMFYNTGIATYIWVLSSHKPAH 405 Query: 418 RRGKVQLINATD-----------------------LWTSIRN-EGKKRRIINDDQRRQIL 453 R+GKVQLINA+ + ++R G KR+ + D +I+ Sbjct: 406 RKGKVQLINASKERAKTGGRGRSGGSEVEGDDENVFYAAMRKSLGSKRKELTPDAIDKIV 465 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQ 512 Y FS++ DY+ FGYRRI V RPL+++ + D+ L L+AD W K+ Q Sbjct: 466 QTYGQFAENDFSKIFDYKEFGYRRITVERPLQLAIYPKDELRLEALQADTAWEKMDETTQ 525 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 LD L Q+ Y + F+K+ + K +VK S + + G D A+ Sbjct: 526 QAILDALASFEQE--KYLSRDKFLKQL----KTKLAEVKLSAVQLKLIVKHLGEHDDEAE 579 Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632 G+ + +L + ENVP E++ DYF REV PHVP+A+ID+ D KD E+G VG Sbjct: 580 VC-KAKGQIEANPDLRDNENVPLTETVADYFAREVLPHVPNAWIDESKTDPKDGEVGIVG 638 Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 YEI FNR FY Y+P R L++IDA+L V A+I LL+E+ Sbjct: 639 YEIPFNRHFYVYEPPRALEEIDADLDAVSAEIMQLLQEV 677 >gi|73668549|ref|YP_304564.1| type I restriction-modification system methyltransferase subunit [Methanosarcina barkeri str. Fusaro] gi|72395711|gb|AAZ69984.1| type I restriction-modification system methyltransferase subunit [Methanosarcina barkeri str. Fusaro] Length = 680 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 276/692 (39%), Positives = 393/692 (56%), Gaps = 33/692 (4%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M F +FIW A++ L DFK ++ VILPFT+LRRL+C L PT+ V E Sbjct: 1 MNNFQEKT----SFIWSVADEVLRDDFKRGEYPDVILPFTVLRRLDCVLAPTKDKVLEYD 56 Query: 60 LAFGGS-NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 G + +GYSFYNTS Y L T+ NL +YI FS+N + + + Sbjct: 57 KKLEGKIENKNGALRHASGYSFYNTSPYDFEKLLAAPTSIGQNLRAYINGFSENMREVID 116 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F TI LE+ GLL+ + + F+ ++LHPD V + M I+E LIR+F + +E + Sbjct: 117 KFKLWGTIDTLEEKGLLFLLIQKFANVDLHPDAVSNHEMGYIFEELIRKFNEQTNENPGE 176 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPR+V+ L LLL D ++ ++RT+YDP CGTGG LT A H+ D Sbjct: 177 HFTPREVIRLMVNLLLSQDQEKLAQN-HIVRTVYDPACGTGGMLTIAKEHILDH---INP 232 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 + GQE+ +T A+ + MLI+ + D + NI+ S+ SKD G+ F Y L Sbjct: 233 NANIKLFGQEVNDKTFAISKSDMLIKGDDKD-----ADNIKPDSSFSKDGHAGETFDYIL 287 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPP+GK W+K++D +EKE K G GRFG GLP+ SDG ++F+ H+ +K++ GG R Sbjct: 288 SNPPYGKDWKKEEDFIEKEAKKGYEGRFGAGLPRKSDGQLIFVQHMISKMKPTEEGGSRI 347 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIV++ SPLF G AGSGESEIRRW++END +EAIVALP LF+ T I TY+WI++NRK E Sbjct: 348 AIVMNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPNQLFYNTGINTYIWIITNRKDE 407 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 +RRGKVQLINA D + +R G KR I+ Q +I ++ + +F ++ D FGY Sbjct: 408 QRRGKVQLINAADFYVKMRKSLGDKRNEISPSQIEEITKLHTDFKENEFVKIFDDEAFGY 467 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL---------------DILK 520 R+I V RPLR++F + RL+ ++KL+ + L +I+ Sbjct: 468 RKITVERPLRLNFQASPERITRLKEQSAFQKLAVSKKKKDLQEKAREEAEGRKVREEIIN 527 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580 + + + E + K +K + + + A D A+ D G Sbjct: 528 ALSGMDANVFYTDREQFEKDLNAALKKADLKPATAVKKSIFEALSESDENAETCKDKKGN 587 Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 D+ L + ENVP E I YF REV PHVPDA+ID+ D KD ++G+VGYEINFNR+ Sbjct: 588 NEADSQLKDTENVPLKEDIYTYFEREVKPHVPDAWIDETTRDPKDGKVGKVGYEINFNRY 647 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 FY+Y+P R L+DI+A++ +E +I LL EMA Sbjct: 648 FYKYEPPRALEDIEADINKLENEILELLREMA 679 >gi|254491699|ref|ZP_05104878.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010] gi|224463177|gb|EEF79447.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010] Length = 653 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 275/679 (40%), Positives = 401/679 (59%), Gaps = 36/679 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M F+ S +FIW A+ L G+FK +++G+VILPFT+LRRL+C LE ++ V K Sbjct: 1 MENFSTS----VSFIWSIADILRGNFKQSEYGRVILPFTVLRRLDCVLEASKGDVLNKLK 56 Query: 61 AFGGS---NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF 115 + + + AG +F+NTS Y+ L N NL +I FSD+A+ IF Sbjct: 57 SLSDNVDHTMRETMLNMAAGQNFHNTSPYTFQKLLDDPDNIAANLSHFINGFSDDAREIF 116 Query: 116 -EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + F I RL+K LLY + F+ +LHPD V + M ++E LIRRF + +E A Sbjct: 117 IDRFKLPEQITRLDKDNLLYLVVSKFAQADLHPDAVSNLQMGYMFEELIRRFSEQSNETA 176 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR+V+ L LL D + PG+IR L+DP CGTGG L+ A +++ + Sbjct: 177 GEHFTPREVIRLMVDLLFYEDADVLT-KPGIIRKLFDPACGTGGMLSIAEDYLRELNPDA 235 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + +GQEL E++ +C + M+I+ +KNI G++ S+D ++F Y Sbjct: 236 HLE----VYGQELNDESYGICKSDMIIKGQN-------AKNIHPGNSFSEDGLEDEQFDY 284 Query: 295 CLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG +W+K + A+++E + G GRFG GLP++SDGS+LF+ H+ +K + Sbjct: 285 MLSNPPFGVEWKKVEKAIKEEANTLGLKGRFGAGLPRVSDGSLLFVQHMISKFNRNGDP- 343 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 R A+VL+ SPLF G AGSGESEIRRW++END +EAIVALPTD+F+ T IATY+WI++N+ Sbjct: 344 SRLAVVLNGSPLFTGSAGSGESEIRRWIIENDWLEAIVALPTDMFYNTGIATYIWIITNK 403 Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +R+GKVQLINATD + +R G KR+ I +Q + I +++ + E + S++ D Sbjct: 404 KKPQRKGKVQLINATDFHSPMRKSLGSKRKQIAPEQIKTIAELFGNFEESEQSKIFDNSD 463 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 FGY+RI V RPL+++F +D+ L L + + KL Q + L+ + + Y Sbjct: 464 FGYQRITVERPLKLNFNVDEERLELLRDNKAFSKLDKTDQQTIITALETLPGR-GLYLNR 522 Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592 ++FVK+ K+ +VKA ++A +D AD T+ G+ PD+ L +YEN Sbjct: 523 DTFVKD--MDKALKSAQVKAGAPLKKVILSALSERDENADVCTNNKGKPEPDSELRDYEN 580 Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652 VP E I YF REV PHVPDA+ID +VG+EI FNR FYQY P R L++ Sbjct: 581 VPLKEDIDTYFQREVIPHVPDAWIDYDK--------TKVGFEIPFNRHFYQYVPPRPLEE 632 Query: 653 IDAELKGVEAQIATLLEEM 671 IDAEL V A+I LL E+ Sbjct: 633 IDAELDAVTAEILELLREV 651 >gi|126664814|ref|ZP_01735798.1| N-6 DNA methylase [Marinobacter sp. ELB17] gi|126631140|gb|EBA01754.1| N-6 DNA methylase [Marinobacter sp. ELB17] Length = 658 Score = 764 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 276/674 (40%), Positives = 400/674 (59%), Gaps = 21/674 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLA 61 + + +A FIW A+ L GDFK + +G+VILPFTLLRRLEC LEPT+ V + Sbjct: 2 NAENNSQIAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKDQVLVGARAHV 61 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + ++ A +F+N S SL +L T T ++L SY+ SFS +A+ IFE F F Sbjct: 62 DKPDAVREKLLLREAEQTFFNASPLSLGSLSDTQTADDLMSYVQSFSQDAREIFEHFHFE 121 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L LLY++ + F+ I+L+P + + M I+E LIR+F +E A + TPR Sbjct: 122 DFVQQLSANNLLYQVVQRFASIDLNPKRISNFGMGLIFEELIRKFAESSNETAGEHFTPR 181 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+VHL T+L+L + P I T+YDPT GTGGFL++ ++ + Sbjct: 182 DIVHLTTSLVLTGQEHKL--QPNSIVTIYDPTAGTGGFLSEGDEYIQQVSD----KVTVS 235 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 HGQEL PE++A+C A MLI+ + + I+ G+TLS D + LSNPPF Sbjct: 236 LHGQELNPESYAICKADMLIKGQKV-------EQIKLGNTLSDDQLYDLKADIMLSNPPF 288 Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G +W+K + V EHK G GRFGPGLP++SDGS+LFL+HL +K+ P +GG R I+L Sbjct: 289 GVEWKKVQKQVTDEHKFKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIIL 348 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + SPLF G AGSGESEIRR+LL++D++EAIVALPTD+F+ T I+TY+WILSN K ER+G Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQSDMVEAIVALPTDMFYNTGISTYIWILSNNKPTERKG 408 Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 KVQLI+A+D + +R G KR+++++ + +I+ +Y + + S++ FGYRRI Sbjct: 409 KVQLIDASDRASKMRKSLGSKRQLVSETDQDEIVRLYGEFQETEKSKIFPNDAFGYRRIT 468 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 V RPLR++F +AR+ + +KL Q L + + + + Sbjct: 469 VERPLRLNFQTSDERIARITEEKAIQKLEEEEQEKILAACRAIDSNT---LYQNRPRFQK 525 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 + +V + A +NA +DP AD + G PD L + ENVP ES+ Sbjct: 526 LLKAALTNHQVYPGTPQLKALMNALSERDPEADIC-ESKGNPEPDGGLRDNENVPLGESV 584 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF REV PHVPDA+ID+ DE+D E+G VG+EI FNR FY + P R L +IDA+LK Sbjct: 585 YDYFKREVIPHVPDAWIDESKTDEQDGEVGIVGFEIPFNRHFYVFTPPRPLDEIDADLKQ 644 Query: 660 VEAQIATLLEEMAT 673 +I ++E ++ Sbjct: 645 CTDRIKQMIEGLSA 658 >gi|298674424|ref|YP_003726174.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303] gi|298287412|gb|ADI73378.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303] Length = 679 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 262/687 (38%), Positives = 402/687 (58%), Gaps = 30/687 (4%) Query: 6 GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + ANFIW A++ L DFK + VILPFT+LRR+EC LEPT+ V + Y Sbjct: 2 SNFQEKANFIWSVADEVLRDDFKRGKYRDVILPFTVLRRVECVLEPTKDNVIQTYENVKD 61 Query: 65 S-NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + AG+SFYNTS Y L L +N N +SYI SFS+N + IF+ F Sbjct: 62 KVKDPHNALCHAAGHSFYNTSPYDLKKLLDDPSNIGQNFKSYINSFSENMRDIFDKFYLW 121 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + I +L + LLY + + FS ++LHPD+V + M I+E LIRRF +V+E + TPR Sbjct: 122 NYIDQLIEDNLLYMLLEKFSNVDLHPDSVSNHEMGYIFEELIRRFNEDVNENPGEHFTPR 181 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V+ L L+ D+A + IRT+YDP CGTGG LT A +H+ + Sbjct: 182 EVIRLMVNLIFYQDEAKLGHNT-PIRTIYDPACGTGGMLTIANDHIL---KEINSNADIW 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 GQE+ PET A+ + M+++ + D ++NI+ GS S D + F+Y LSNPPF Sbjct: 238 LFGQEVNPETFAIAKSDMMLKGNDRD-----AENIKMGSVFSNDGHPNETFNYMLSNPPF 292 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 GK W+K+++ + +E K+ RF GLP+ DG +LFL H+ +K++ P +GG R A+V + Sbjct: 293 GKDWKKEQNFILEEAKSA-SSRFTAGLPRKDDGQLLFLQHMISKMKRPEDGGSRIAVVTN 351 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF G AGSGESEIRRW++END +EAIVALP LF+ T I TY+WI++NRK + R+GK Sbjct: 352 GSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGINTYVWIVTNRKEDHRKGK 411 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 +QL++A + + +R G+KR I+ +Q I +++ + G++S++ D FGYR+I + Sbjct: 412 IQLVDARECYQKMRKSLGEKRHEISSEQIDTITNLHNNFNEGQYSQIFDNHEFGYRKITI 471 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLS---------------PLHQSFWLDILKPMMQQ 525 +PLR+SF + + +L+ ++ L+ Q I++ + + Sbjct: 472 EQPLRLSFQVTPERIEQLKEQKAFKNLAVSKKRKNTEEKEKEEAEGQKLQDSIIEMLSEM 531 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585 + + ++ K + + + A +++ +D AD D W PD+ Sbjct: 532 DSEKFYKNRDEFWKVLNDNLKKHGININNTVEKAILDSMSERDETADICVDSKKRWEPDS 591 Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645 L +YENVP E I DYF REV PHVP+A+ID+ D+ D ++G+VGY INFNR+FY+Y+ Sbjct: 592 QLRDYENVPLDEDIYDYFEREVKPHVPEAWIDESKTDQYDNDVGKVGYIINFNRYFYEYE 651 Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMA 672 P R L++I++++ +E +I LL+E++ Sbjct: 652 PPRPLEEIESDINDLENEILELLQEVS 678 >gi|257061734|ref|YP_003139622.1| N-6 DNA methylase [Cyanothece sp. PCC 8802] gi|256591900|gb|ACV02787.1| N-6 DNA methylase [Cyanothece sp. PCC 8802] Length = 676 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 269/683 (39%), Positives = 393/683 (57%), Gaps = 27/683 (3%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + +FIW A+ + FK + VILPFT+LRRL+C LEPT+ V E Y + G Sbjct: 2 QNFGEKVSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61 Query: 66 NIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 +L+ K +G++FYN S Y L + NL+ YI SFS N + + E FDF + Sbjct: 62 LENLDPILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPN 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 TI +LE+A LL+++ + F I+LHPD V + M I+E LIR+F + E + TPR+ Sbjct: 122 TIDKLEEADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPRE 181 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L +LLL D K++ + RT+YDP CG+GG LT A + + + + Sbjct: 182 VIRLMVSLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPNATVF----L 236 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQE+ PET A+C + + ++ + + NI+ GSTLS D + K F Y L+NPP+G Sbjct: 237 FGQEVNPETFAICKSDLYMKSED----GKDADNIKFGSTLSNDQHSDKSFDYLLANPPYG 292 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K W++DKDAVE E + RF G P+ISDG +LFL + +++ P NGG R AIV++ Sbjct: 293 KDWKRDKDAVETEAQKTG-SRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNG 351 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRRW+LEND +EAI+ALP LF+ T I+TY+WILSN+K +++ KV Sbjct: 352 SPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKV 411 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLIN +D W ++R G KRR I+ + +I I+ E + S+ + FGYR+I + Sbjct: 412 QLINGSDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIE 471 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYP 528 RPLR++F + + R++ + L+ + ++ ++ + Sbjct: 472 RPLRLNFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSD 531 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588 + + E + K V + A + KD A+ D +G PDT L Sbjct: 532 ELYKDRNPFELLLKKAFKVENVAVKGALFKAILTGLSEKDETAEICRDKDGNPEPDTELR 591 Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 + ENVP E I DYF REV PHV DA+I++ D KD +G+VGYEINFNR+FYQYQP R Sbjct: 592 DTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQPPR 651 Query: 649 KLQDIDAELKGVEAQIATLLEEM 671 +L +I+ +++ VE I +L+EM Sbjct: 652 ELSEIEKDIQQVEGAILAMLKEM 674 >gi|218248664|ref|YP_002374035.1| N-6 DNA methylase [Cyanothece sp. PCC 8801] gi|218169142|gb|ACK67879.1| N-6 DNA methylase [Cyanothece sp. PCC 8801] Length = 676 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 269/683 (39%), Positives = 394/683 (57%), Gaps = 27/683 (3%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + +FIW A+ + FK + VILPFT+LRRL+C LEPT+ V E Y + G Sbjct: 2 QNFGEKVSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61 Query: 66 NIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 +L+ K +G++FYN S Y L + NL+ YI SFS N + + E FDF + Sbjct: 62 LENLDPILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPN 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 TI +LE+A LL+++ + F I+LHPD V + M I+E LIR+F + E + TPR+ Sbjct: 122 TIDKLEEADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPRE 181 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L +LLL D K++ + RT+YDP CG+GG LT A + + + + Sbjct: 182 VIRLMVSLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPNATVF----L 236 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQE+ PET A+C + + ++ + + NI+ GSTLS D + K F Y L+NPP+G Sbjct: 237 FGQEVNPETFAICKSDLYMKSED----GKDADNIKFGSTLSNDQHSDKSFDYLLANPPYG 292 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K W++DKDAVE E + RF G P+ISDG +LFL + +++ P NGG R AIV++ Sbjct: 293 KDWKRDKDAVETEAQKTG-SRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNG 351 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRRW+LEND +EAI+ALP LF+ T I+TY+WILSN+K +++ KV Sbjct: 352 SPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKV 411 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLIN +D W ++R G KRR I+ + +I I+ E + S+ + FGYR+I + Sbjct: 412 QLINGSDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIE 471 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYP 528 RPLR++F + + R++ + L+ + ++ ++ + Sbjct: 472 RPLRLNFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSD 531 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588 + + E + K V + A + KD A+ D +G PDT L Sbjct: 532 ELYKDRKPLELLLKKAFKVENVAVKGALFKAILTGLSEKDETAEICRDKDGNPEPDTELR 591 Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 + ENVP E I DYF REV PHV DA+I++ D KD +G+VGYEINFNR+FYQYQP R Sbjct: 592 DTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQPPR 651 Query: 649 KLQDIDAELKGVEAQIATLLEEM 671 +L +I+ +++ VE +I +L+EM Sbjct: 652 ELSEIEKDIQQVEGEILAMLKEM 674 >gi|56459751|ref|YP_155032.1| Type I restriction-modification system methyltransferase subunit [Idiomarina loihiensis L2TR] gi|56178761|gb|AAV81483.1| Type I restriction-modification system methyltransferase subunit [Idiomarina loihiensis L2TR] Length = 660 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 276/675 (40%), Positives = 403/675 (59%), Gaps = 21/675 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF- 62 T + + A+FIW A+ L G FK + +G+VILPFTLLRRLEC L P + V E Sbjct: 2 NTENYSQTASFIWSVADLLRGHFKQSQYGRVILPFTLLRRLECVLAPNKQKVLEAAKQHQ 61 Query: 63 -GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + ++ + FYN S +L+TL T T +L SY+ SFS +A+ IFE F+F Sbjct: 62 NKPDAVREQLLLRESQNDFYNASSLTLATLSDTQTAEDLISYVQSFSSSAREIFEHFNFE 121 Query: 122 STIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +L +A LLY+I + F S I+L D + + M I+E LIR+F +E A + TP Sbjct: 122 EFVLKLAEADLLYQITQQFGSKIDLSTDNISNYGMGLIFEELIRKFAESSNETAGEHFTP 181 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 RD VH AT+LL+ + + P I T+YDPT GTGGFL+++ ++ + Sbjct: 182 RDCVHAATSLLMTGQEEVLS--PNSIITIYDPTAGTGGFLSESEEYIQS----ISEKVTV 235 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 GQEL E++A+C A M+I+ E D NI+ G+TLS D ++F Y L+NPP Sbjct: 236 KLFGQELNSESYAICKADMMIKSQEVD-------NIKLGNTLSNDQLAHEKFKYMLANPP 288 Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 FG W+ + V EHK G GRFGPGLP++SDGS+LFL+HL +K+ NGG R I+ Sbjct: 289 FGVDWKASQRVVNDEHKVKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDTRNGGSRIGII 348 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 L+ SPLF G AGSGESEIRR+LL+NDL+EAIVALP+D+FF T I+TY+WILSN K ER+ Sbjct: 349 LNGSPLFTGSAGSGESEIRRYLLQNDLVEAIVALPSDMFFNTGISTYIWILSNAKKPERK 408 Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 GK+QLI+ +D + +R G KR+ + ++ +++ +Y + E K S++ FGYRR+ Sbjct: 409 GKLQLIDGSDAFAKMRKSLGSKRKYLTEENINELVRLYGAVEETKNSKVFPNEAFGYRRV 468 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + RPLR++F + +ARL+ + +KL S ++ + + Sbjct: 469 TIERPLRLNFQASEERVARLDDEKALQKLKAEDFSQLKQAIQQIDADTLFINRDD---FT 525 Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598 + + K + + + + A +NA +D AD D G D+ L +YENVP + Sbjct: 526 RTLNAQLKVSDLNLTAAQLKAVLNALSERDSDADVCADKKGNPEADSGLRDYENVPLTDD 585 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 I +YF R+V PHVPDA+ID+ DE+D EIG VG+EI FNR FY ++P R L++IDA+LK Sbjct: 586 IYEYFERDVKPHVPDAWIDESKRDEQDGEIGIVGFEIPFNRHFYVFEPPRPLEEIDADLK 645 Query: 659 GVEAQIATLLEEMAT 673 +I ++EE++ Sbjct: 646 QCTDKIKQMIEELSA 660 >gi|188585425|ref|YP_001916970.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350112|gb|ACB84382.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 673 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 265/689 (38%), Positives = 393/689 (57%), Gaps = 40/689 (5%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 S NFIW A+ L GD+K +D+GKVILPFT+L+RL+CAL+PT++ V E+Y Sbjct: 2 NIASFQEKVNFIWSIADLLRGDYKRSDYGKVILPFTVLKRLDCALKPTKNKVLEEYKMLK 61 Query: 64 GSNI--DLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFD 119 S I + G F+NTS++ + N +NL YI FS NA+ I E F+ Sbjct: 62 DSGIQNPEPVLNDITGQHFHNTSQFDFEKMKNEPDNIGDNLRHYINGFSTNARDIIEYFN 121 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F + RLE++ LLY I FS I+L P+ V + M I+E LIR+F + +E A + T Sbjct: 122 FHDHLERLEQSNLLYLIVSRFSEIDLSPEKVSNLEMGYIFEELIRKFSEQSNETAGEHFT 181 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+V+ L LL + D L + G++RT+YDP CGTGG L+ A +++ + + K+ Sbjct: 182 PREVIRLMVNLLFNEDSDLL-QKEGLLRTIYDPACGTGGMLSVARDYLRELNNDAKLE-- 238 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 GQEL PE++A+C A M+I+ L+ D NI+ G++ + D F+ F Y LSNP Sbjct: 239 --MFGQELNPESYAICKADMMIKGLDPD-------NIKFGNSFTNDGFSDNTFDYMLSNP 289 Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG +W+K + +++EH+N G GR+G GLP+I+DGS+LFL H+ +K++ NGG R AI Sbjct: 290 PFGVEWKKIEKEIKEEHENLGFSGRYGAGLPRINDGSILFLQHMISKMQHQ-NGGSRIAI 348 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VL+ SPLF G AG GES IR+W++ENDL+EAIVALP LF+ T I TY+W+L+NRK R Sbjct: 349 VLNGSPLFTGDAGQGESNIRKWIIENDLLEAIVALPEQLFYNTGINTYVWVLTNRKRPWR 408 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GK+QLINA + + +R G+KR I+ +Q +I IY + G++S++ D FGY + Sbjct: 409 KGKIQLINAVEFYKKMRKSLGEKRHEISPEQIDKISKIYGEFKEGEYSKIFDNEDFGYYK 468 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD-------------ILKPMMQ 524 I V RPLR++F + RL+ ++ L+ + + +++ Sbjct: 469 ITVERPLRLNFQASDERIERLKEQRAFQNLAKSKKKDPAKKEEEINEGEEQQEAIINVLK 528 Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 + + I K +K S A + A +D A+ TD G PD Sbjct: 529 SMDETVYKNREEFTKILDEALKDAGIKLKASLKKAVLKALSEQDETAEICTDSKGNPEPD 588 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 +L + E V + I YF REV PHVPDA+I D+ ++GYEI F R FY+Y Sbjct: 589 PDLRDNEIVSLKDDINGYFEREVKPHVPDAWI--------DESKTKIGYEIPFTRHFYKY 640 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +P R+ + I E+ +E I L+++ Sbjct: 641 EPPREPEVIMEEIIELEHDIKEELKKVIG 669 >gi|146280648|ref|YP_001170801.1| type I restriction-modification system, M subunit [Pseudomonas stutzeri A1501] gi|145568853|gb|ABP77959.1| type I restriction-modification system, M subunit [Pseudomonas stutzeri A1501] Length = 639 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 303/670 (45%), Positives = 418/670 (62%), Gaps = 35/670 (5%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +LA FIW A+ L G FK +++G++ILPFT+LRRLEC LEPTR VR ++ + S Sbjct: 2 NQQTLAPFIWNIADLLLGAFKPSEYGRIILPFTVLRRLECVLEPTRDKVRSQFESMKASG 61 Query: 67 IDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 +D++ + AG +FYN S++SL ++GST+TR NLE YIA FS NA+ +FE F F + +A Sbjct: 62 VDMDLILPTTAGATFYNVSQFSLGSVGSTSTRANLEDYIAKFSANARQVFEHFAFDTWLA 121 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +LE LLY + + F+ ++LHPD + + M ++EHLIR+F ++ A + TPRDVV Sbjct: 122 KLENRNLLYLVTQKFAAVDLHPDKISNHEMGLVFEHLIRKFAESSNDDAGQYFTPRDVVR 181 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 LAT L+ PD G++RT+YD GTGGFL+ A+ V + + ++ VP+ Q Sbjct: 182 LATTLVFAPDHQAL-NGEGVVRTVYDCAAGTGGFLSSAIEQVYEWNPNARL----VPYAQ 236 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL PET+A+ VA LI+ + ++NI+ G+TLS D ++F YCL+NPPFG KW Sbjct: 237 ELNPETYAISVADKLIQGYD-------TRNIKLGNTLSDDHLPHEQFDYCLANPPFGVKW 289 Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 E + V+ EH + G GRFG GLP++ DGS+LFLMHL +K + GG R IVLS SP Sbjct: 290 ENVQKQVQAEHSQQGFAGRFGAGLPRVGDGSLLFLMHLLSKRKPVELGGSRIGIVLSGSP 349 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LFNG AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+LSN K R+GKVQL Sbjct: 350 LFNGGAGSGESEIRRWILENDWLEAIIALPTDLFYNTGIGTYIWVLSNHKDALRKGKVQL 409 Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 I+A+ + +R G KR+ ++D+Q +I ++ + E G S++ FGYRRI V RP Sbjct: 410 IDASAMHAPMRKSLGSKRKYLSDEQIAEIAKLHEAFEEGPNSKIFATTDFGYRRITVERP 469 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 LR+ F + L + D + Y +F+K + Sbjct: 470 LRLRFSITPERLKIYQDIKG------------ADQAEAFATVRGEYDNLSAFLKAAGIK- 516 Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603 K K + A ++ FG +D A PV D G D++L E+ENVP ++I DYF Sbjct: 517 -------KLGKGALKAALSCFGERDANAQPVLDDKGNQQADSDLREFENVPLNQNIDDYF 569 Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663 REV PHVPDA+ID D KD ++G VGYEINFNR+FY YQP R L +IDA+LK VEA+ Sbjct: 570 AREVLPHVPDAWIDTGKTDAKDGQVGIVGYEINFNRYFYVYQPPRPLAEIDADLKAVEAE 629 Query: 664 IATLLEEMAT 673 IA LL E+ Sbjct: 630 IAALLGEVTA 639 >gi|310830281|ref|YP_003965381.1| type I restriction-modification system DNA methylase, putative [Ketogulonicigenium vulgare Y25] gi|308753187|gb|ADO44330.1| type I restriction-modification system DNA methylase, putative [Ketogulonicigenium vulgare Y25] Length = 673 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 410/676 (60%), Positives = 499/676 (73%), Gaps = 6/676 (0%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E SLA+FIWKNA+DLWG+FKH +FGK+ILPFTLLRRLEC LEPTR VRE Sbjct: 1 MSETQVKNTSLADFIWKNADDLWGNFKHVEFGKIILPFTLLRRLECVLEPTREQVRETVK 60 Query: 61 AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + S IDL+ ++ G+ FYNTS YSL++LG+T TR NLE YIA FS+NA+ IFE FD Sbjct: 61 SLKDSGIDLDVILRQQTGFPFYNTSNYSLASLGATRTRQNLEDYIAQFSENARVIFEQFD 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F++TIAR+++AG+LYKIC NFS I+LHPD VP+RVMSN+YEHLIRRFG+EV+E AEDFMT Sbjct: 121 FANTIARMDRAGVLYKICLNFSAIDLHPDAVPERVMSNVYEHLIRRFGAEVNEAAEDFMT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRDVVHLA LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV + I P+ Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRSLQDRYSIAPV 240 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +VP+GQELEPETHAVC+AGML++ LESDP RDLSKNI+ GSTLS D G++FHYC+SNP Sbjct: 241 IVPYGQELEPETHAVCLAGMLLKTLESDPGRDLSKNIKLGSTLSADKHRGEKFHYCVSNP 300 Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFGKKWE D DAV +EH + G GRFGP LP++SDGSMLFL+HL +KLE P GGGRAAI Sbjct: 301 PFGKKWEMDADAVTREHLEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLEDPIKGGGRAAI 360 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VLS SPLFNG AG GESEIRR+LLE D++EAI+ALPT++FFRT I TY+WILSN+K + R Sbjct: 361 VLSGSPLFNGNAGQGESEIRRYLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNKKPKHR 420 Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +G VQLINAT L+ +R G KRR + +DQ +I+ +Y K S +L FGYRR Sbjct: 421 KGMVQLINATGLYEPMRKSEGNKRRRVGEDQTAEIVRMYSEFVQTKESLILQATDFGYRR 480 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 I+VLRPLR I+ + G+A L + W K S Q+ WL + + + + + W ESF K Sbjct: 481 IRVLRPLRKKMIISEEGIAALADEKAWEKRSAGQQAGWLGLFRENLGRTESWHWIESFAK 540 Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597 + K ++ K I AF AF DP DPVTD G IPD +LT+YENVP Sbjct: 541 NAAKCDDDLG---KVDVGLIKAFQKAFAVHDPDMDPVTDKKGNVIPDDDLTDYENVPLTT 597 Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657 I DY EV PH DAYID+ + DE D +IG VGYEINFNR FY+YQP RKL+DIDAEL Sbjct: 598 DIHDYLASEVLPHAEDAYIDETYRDETDGDIGIVGYEINFNRHFYEYQPPRKLEDIDAEL 657 Query: 658 KGVEAQIATLLEEMAT 673 K VEA+IA +L E+ Sbjct: 658 KAVEAEIAGMLAEVTA 673 >gi|307720088|ref|YP_003891228.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294] gi|306978181|gb|ADN08216.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294] Length = 652 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 290/669 (43%), Positives = 412/669 (61%), Gaps = 26/669 (3%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 S++ IW A+ L GD+K +D+GK+ILPFTLLRRLEC LEPTR V + A I Sbjct: 4 QSISALIWSTADLLRGDYKQSDYGKIILPFTLLRRLECVLEPTRDDVLTENEARKNLGIP 63 Query: 69 LESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 +E F+ + +G+SFYNTS+Y+L+ L +N NLESYI FS NA+ IFE ++F++ I Sbjct: 64 MEQFLTRKSGHSFYNTSKYTLTKLMSDPSNISQNLESYINDFSPNAREIFEKYEFTAQID 123 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L +A LLY I + F+ ++LHPDT+ + M ++E LIR+F + +E A + TPRD+V Sbjct: 124 KLNEANLLYLIIEKFATVDLHPDTISNHAMGIVFEELIRKFAEQSNETAGEHFTPRDIVR 183 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L T+LL DD + G++R+LYDPT GTGGFL+ +V + LV GQ Sbjct: 184 LTTSLLFSTDDDVLT-KKGIVRSLYDPTAGTGGFLSSGSEYVHELNPDA----TLVTFGQ 238 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL E++A+C A M+I+ + +NI+ G+TLS D +F Y LSNPPFG +W Sbjct: 239 ELNGESYAICKADMMIKGV-------QVENIKHGNTLSDDQLGENKFDYMLSNPPFGVEW 291 Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 +K + V+ E+ + G GRFGPGLP++SDGS+LFL+HL +K+ GG R I+L+ SP Sbjct: 292 KKVEKVVKAENAEQGYNGRFGPGLPRVSDGSLLFLLHLVSKMRPKREGGSRIGIILNGSP 351 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LF G AGSGESEIRR++LEND +EAIVA+P D+FF T IATY+WILSN K E R+G+VQL Sbjct: 352 LFTGGAGSGESEIRRYILENDYLEAIVAMPNDMFFNTGIATYIWILSNNKPEHRQGEVQL 411 Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 INA+ + ++R G KR+ +++ Q I+ IY K S++ + FGYRRI V R Sbjct: 412 INASSMGNAMRKSLGSKRKFLDETQISDIVRIYGENAAAKISKIFNITDFGYRRITVERS 471 Query: 484 LRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L++S F D L L+ D + K+ L ++ + + + K+ Sbjct: 472 LQLSYFPHDADKLESLQNDKVFVKMKEL--------GAEILTALGAIESDKIMSRTEFKN 523 Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602 +K + K S + D A+ D G+ + +L +YEN+P E I +Y Sbjct: 524 ELSKKMTSKLSATQFKLVQKHISMHDDEAELCKDSKGKLEANADLRDYENIPLSEDINEY 583 Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662 F REV+PHVP A+ID+ D KD E+G VGYEI FNR FY+Y P R L++IDAEL+ + A Sbjct: 584 FAREVTPHVPLAWIDEKKRDAKDGEVGIVGYEIPFNRHFYEYAPPRPLEEIDAELETLNA 643 Query: 663 QIATLLEEM 671 +I +L E+ Sbjct: 644 EIMEMLREI 652 >gi|329937002|ref|ZP_08286631.1| type I restriction-modification system methyltransferase subunit [Streptomyces griseoaurantiacus M045] gi|329303609|gb|EGG47494.1| type I restriction-modification system methyltransferase subunit [Streptomyces griseoaurantiacus M045] Length = 663 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 275/688 (39%), Positives = 396/688 (57%), Gaps = 46/688 (6%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + LAN W A+ L GD+K +D+GKVILPFT+LRRLEC LEPTR AV E F Sbjct: 2 NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLEPTRDAVTETVERFA 61 Query: 64 GSNIDLESFVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120 G +I+ + F++ AG++FYNTS +L + + + NL+ Y+ASFSDNA+ + + F+F Sbjct: 62 GQDINADKFLRKAAGHAFYNTSSLTLKKIAADPGSAAKNLQVYVASFSDNARGVLDRFEF 121 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + RL+ AGLLYKI F+ ++L P+ V + M I+E LIRRF + +E A + TP Sbjct: 122 AQQVKRLDSAGLLYKIIGKFTDLDLRPEVVSNHNMGYIFEELIRRFSEQSNETAGEHFTP 181 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+V+ L LL+ PD + PG++RT+ DP CGTGG L+ + + + + Sbjct: 182 REVIQLMVRLLVAPDGDALQL-PGVVRTVMDPACGTGGMLSATDDLIKELNPDATVE--- 237 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +GQEL PE+ A+C + ++I+ +NI G++ + D + F Y L+NPP Sbjct: 238 -VYGQELNPESWAICRSDLMIKGQNP-------ENIAFGNSFNDDGHARRTFDYLLANPP 289 Query: 301 FGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL---PPNGGGRA 356 FG +W+K K+ VE+EH K G GRFG GLP+I+DGS+LFL H+ +K++ GG R Sbjct: 290 FGVEWKKVKEDVEEEHEKLGSAGRFGAGLPRINDGSLLFLQHMISKMKPVDVNGGGGSRI 349 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIV + SPLF G AGSGESEIRRW+LEND +E IVALP LF+ T I+TY WIL+NRK+ Sbjct: 350 AIVFNGSPLFTGAAGSGESEIRRWILENDWLEGIVALPDQLFYNTGISTYFWILTNRKSP 409 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYV----SRENGKF-----SR 466 + +GKV L++A D W +R G KR+ + D ++ +Y + ++ + + Sbjct: 410 DHKGKVVLLDARDQWQKMRKSLGDKRKELGKDHIATVVKLYGEALSAAQDAEHPLHAKVK 469 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + D FGY+RI V RPL++ F + + LA LEA +KL ++ + Sbjct: 470 VFDNTAFGYQRITVERPLKLRFEVTEETLAALEASKAIQKL------PQASVMLEAFASL 523 Query: 527 YPYGWAESFVKESIKSNEA--KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 GW++ + F A A G +DP + V G+ D Sbjct: 524 KGSGWSKKTDAWLALKDAVVQAGSTWPTGAPFNKALREAIGVRDPEGEVQL-VKGKPEAD 582 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 L +YENVP E +++Y REV PHVPDA+ID ++GYEI F R FY Y Sbjct: 583 AELRDYENVPLGEDVEEYLEREVHPHVPDAWIDH--------SKTKIGYEIPFTRHFYVY 634 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMA 672 +P R L +IDAELK +EA+I LL E+ Sbjct: 635 KPPRPLAEIDAELKLLEAEIQGLLGEVT 662 >gi|332800155|ref|YP_004461654.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1] gi|332697890|gb|AEE92347.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1] Length = 672 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 261/699 (37%), Positives = 379/699 (54%), Gaps = 52/699 (7%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT F NFIW AE L G +K +G VILP +LRR +C L T+ V + Y Sbjct: 1 MTNFQDK----VNFIWTIAELLRGPYKKEQYGDVILPMAVLRRFDCVLAETKEEVLKAYE 56 Query: 61 AFGGSNID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 A + + K++ F NTS+Y L N +NL +Y+ FS NA+ I E Sbjct: 57 ALKETGLQNMDPVLNKISKQKFNNTSKYDFEKLLADPDNIASNLRNYVNGFSKNAREIIE 116 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 FDF I +L LLY I F+ I+LHPD V + M I+E LIRRF A D Sbjct: 117 YFDFDKQITKLNDNNLLYLIVSEFNKIDLHPDAVSNMEMGYIFEELIRRFSEHA--EAGD 174 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPR+V+ L +LL+ D PG++ T+YD GTGG L+ ++ + ++ Sbjct: 175 HYTPREVIRLMVNILLNEDKESLTT-PGLVVTVYDCCAGTGGMLSVTEQYLKELNPGIQV 233 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 GQE+ P+++++C + MLI+ ++D NI G + ++D GK F Y L Sbjct: 234 E----LFGQEINPQSYSICKSDMLIKGQDAD-------NIILGDSFTEDGHKGKTFRYML 282 Query: 297 SNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +NPPFG +W+K + + +E++ G GRFG GLP+ISDGS+LFL HL +K++ G R Sbjct: 283 TNPPFGVEWKKAEKFIREEYEKEGFDGRFGAGLPRISDGSLLFLQHLISKMKQDEK-GSR 341 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AI+ + SPLF G AGSGESEIRRW++END++E I+ALP LF+ T I+TY+WI++NRK Sbjct: 342 IAIIFNGSPLFTGDAGSGESEIRRWIIENDMLEGIIALPDQLFYNTGISTYIWIVTNRKN 401 Query: 416 EE------RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 + R GK+QL+NA D + +R G KR I+++Q +I IY + ++ ++ Sbjct: 402 NDLMKGPARAGKIQLVNAVDFYQKMRKSLGNKRNEISEEQIEEITRIYGEFKENEYCKIF 461 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMM 523 D FGYR+I V RPLR++F + + + L + ++KL+ + ++ K + Sbjct: 462 DNEDFGYRKIVVERPLRLNFQVTEERINNLYNERAFQKLAESKKKGTAGLREIEEGKKLQ 521 Query: 524 QQI--------YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 QQI + V K VK + + A I+A KD AD Sbjct: 522 QQIIAVLKTMNSDIMYKNREVFTKELKKAFKHSDVKLDNALLKAIISALSEKDETADICL 581 Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635 D G PD +L + ENVP E I DYF REV PHVPDA+I D+ ++GYEI Sbjct: 582 DAKGNPEPDPDLRDTENVPLKEDIHDYFEREVKPHVPDAWI--------DESKTKIGYEI 633 Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 F R FY+Y+P R ++I E+K +E I L+++ E Sbjct: 634 PFTRHFYKYEPLRPSEEILEEIKQLEKSIQQKLQKVIGE 672 >gi|217977715|ref|YP_002361862.1| N-6 DNA methylase [Methylocella silvestris BL2] gi|217503091|gb|ACK50500.1| N-6 DNA methylase [Methylocella silvestris BL2] Length = 673 Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 281/687 (40%), Positives = 398/687 (57%), Gaps = 36/687 (5%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++L +F+W AE L GDFK +D+GKVILPF ++RRL+C LE T+ V E + Sbjct: 4 EKTSNLGSFVWSIAEILRGDFKQSDYGKVILPFIVMRRLDCILEATKPYVLEAAKSL-PE 62 Query: 66 NIDLES----FVKVAGY--SFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIF- 115 ID E+ AG YNTS ++ ++L + +NL +I FS N + IF Sbjct: 63 GIDDETRDMILFGAAGDKIRVYNTSRFTFTSLKGQDPGQVHDNLIDFITGFSPNVRDIFL 122 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + F F+ + RL+ G+L+++ + F I+LHP+ V + M ++E LIRRF +E A Sbjct: 123 DKFRFTEALKRLKDGGILWQVFERFCAIDLHPNHVSNIEMGYLFEDLIRRFSEISNETAG 182 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPR+V+ L LLL D A G+IRT+YDP CGTGG L + + Sbjct: 183 EHFTPREVIRLIVELLLANDHAALT-GTGIIRTVYDPACGTGGMLALTEEAMTALNPKVR 241 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + GQEL E+ +C + ML+ + I G+TL++D GK FHY Sbjct: 242 VE----LFGQELNGESFGICKSDMLVTGHNP-------EQIAFGNTLTEDAHLGKTFHYM 290 Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 LSNPP+G W+K +D + EH+ G GRFGPGLP+ISDG +LFL+H+ +K+ G Sbjct: 291 LSNPPYGVDWKKYQDPIRAEHETKGFDGRFGPGLPRISDGQLLFLLHMISKMRDD-EQGS 349 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R IV++ SPLF G AGSGESEIRRW+LE D +EAIVA+PTDLF+ T I+TY+W+L+NRK Sbjct: 350 RIGIVMNGSPLFTGGAGSGESEIRRWMLEKDWVEAIVAMPTDLFYNTGISTYVWLLNNRK 409 Query: 415 TEERRGKVQLINAT--DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG-----KFSR 466 RRGKVQLI+A+ W S+R G KRR I + R +I+ IY NG +FS+ Sbjct: 410 PSARRGKVQLIDASSERFWKSMRKSLGSKRREIPEAARHEIVRIYAEMLNGDGPYGEFSK 469 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 ++D FGYR I++ RPLR++F LARL + +KL + LD + + Sbjct: 470 IVDREDFGYREIRIERPLRLNFQATPKRLARLAEEKAVQKLEIGERQELLDA---LAHNL 526 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586 + E + + K + K A ++A +D AD D NG+ DT Sbjct: 527 PTQSFTNRDAFEKVLTRALKGVGGKIGAPLKKAILSALSERDESADICLDANGKPESDTQ 586 Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 L ++E VP + +D+ REV+P VPDA++D+ + D++D E GRV YEINFNR+FY+Y P Sbjct: 587 LRDHELVPLNDDWRDFVAREVTPFVPDAWVDENYRDDRDGETGRVAYEINFNRYFYKYVP 646 Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673 R L ID ELK +EA+IA LL+E+A Sbjct: 647 PRPLAQIDCELKQLEAEIAGLLKEVAA 673 >gi|320352392|ref|YP_004193731.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032] gi|320120894|gb|ADW16440.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032] Length = 730 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 262/750 (34%), Positives = 376/750 (50%), Gaps = 101/750 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + LANFIW L G +K ++ KVILP T+LRR EC LEPTR A E++ + Sbjct: 2 NGETHSQLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQAALEEFQSLK 61 Query: 64 --GSNIDLESFVKVAGYSFYNTSEYSLST---------LGSTNTRNNLESYIASFSDNAK 112 + ++ G+ FYN S L+ N NL SYI FS N + Sbjct: 62 TKPERVQQARLQQITGHRFYNLSRMQLTLPGEKIHSLLDDPNNLAPNLNSYINGFSANVR 121 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 AI E F FS IA + + +L+++ K F+GI+L P V M ++E LIR + +E Sbjct: 122 AIMEKFKFSEQIAHMAEKNILFEVIKAFAGIDLSPQRVDQMQMGYVFEELIRIGAEQSNE 181 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TPR+V+ L LLL P+ L K +++T+YDP CGTGG L+ A ++ S Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEQDLAKS--HVVKTIYDPACGTGGMLSVAEEYIRHLNS 239 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290 K GQ+ E AVC + MLI+ +++ NI G + ++D F Sbjct: 240 EAKPK----VFGQDWNDEAWAVCKSDMLIKGEDAN-------NIILGDSFTRDGFDRDSD 288 Query: 291 ----RFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANK 345 F Y L+NPPFG +W++ + +++E G GRFG G P+I+DG++LFL H+ K Sbjct: 289 GNKWTFDYMLANPPFGVEWKQQQKTIQQEADTLGYAGRFGAGTPRINDGALLFLQHMIAK 348 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 + G R AIV + SPLF G AGSGESEIRRW++END +EAIVALP LF+ T IAT Sbjct: 349 MRPVDKDGSRIAIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIAT 408 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND----------DQRRQILD 454 Y+W+++NRK +ER+GK+QLI+A + W + ++ G KRR I D D I Sbjct: 409 YIWVITNRKAKERKGKIQLIDARNFWVQMEKSLGNKRRRIGDPNDPNHPRDPDYIADITR 468 Query: 455 IYVSRENGK----------------------------------FSRMLDYRTFGYRRIKV 480 +Y + +G+ S++ D FGY +I V Sbjct: 469 VYENFTDGESRWVVFDKDSKVLGVNGLEPTVDDSNGQKKKYLVVSKLFDNEDFGYHKITV 528 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLH-----------------QSFWLDILKPMM 523 RPLR++F +ARLE ++ L+ Q D+L Sbjct: 529 ERPLRLNFQATAERIARLEEQTAFKNLATSSKKNEIVRQQEIETGKARQQAIRDLLAAFA 588 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Q + + + VK S + A + G +D A D G P Sbjct: 589 DQHGDTLFKDRKQFLLALREIDRARGVKLSAPELKAVLAVLGERDETASICRDKQGNPEP 648 Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 DT+L + E VP E +++YF REV PHVPDA+ID +VGYEI NR FY+ Sbjct: 649 DTDLRDTETVPLKEGVEEYFRREVLPHVPDAWIDH--------SKTKVGYEIPLNRHFYR 700 Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 Y+P R+L +I+AE+K +E +I LL E+ Sbjct: 701 YEPPRELAEIEAEIKVLEGEILDLLREVTA 730 >gi|218960558|ref|YP_001740333.1| Type I restriction-modification system methyltransferase subunit [Candidatus Cloacamonas acidaminovorans] gi|167729215|emb|CAO80126.1| Type I restriction-modification system methyltransferase subunit [Candidatus Cloacamonas acidaminovorans] Length = 690 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 258/707 (36%), Positives = 374/707 (52%), Gaps = 64/707 (9%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61 + + + +A+FIW L G +K ++ KVILPFT+L+R +C L PT+ V + +L Sbjct: 1 MSQNHSQIASFIWSICNLLRGPYKRNEYRKVILPFTVLKRFDCILAPTKDNVLAELPHLY 60 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119 NI ES +++ G FYN S + L + N NL+SYI FS N + I E F Sbjct: 61 GKSDNIISESLIRITGVPFYNKSRLDMKKLLDDTENIAINLQSYINDFSPNVQKIIEYFA 120 Query: 120 FSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 FS IARL+ A LLY + + F ++L P V + M ++E LIR + +E A + Sbjct: 121 FSEQIARLQDANLLYLVLQRFVTDELDLSPQAVDNIQMGLVFEELIRIGAEQSNEEAGEH 180 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L LLL P+ L K +++T++DP CGTGG LT A ++ + K Sbjct: 181 FTPREVIKLMVNLLLSPEADLAKS--HVVKTIFDPACGTGGMLTAAETYIKELNRDAKP- 237 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 +GQ+ E++AVC + MLI+ I G + +D F+ +F Y L+ Sbjct: 238 ---HLYGQDWNKESYAVCCSDMLIKG--------EVAKIHYGCSFEQDGFSTDKFDYMLA 286 Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPPFG +W+K + + EH K G GRFG GLP+I+DGS+LFL H+ +K+ GG R Sbjct: 287 NPPFGVEWKKQQKTITDEHEKLGYNGRFGAGLPRINDGSLLFLQHMISKMRSVEEGGSRI 346 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 IV + SPLF G AGSGES IR+W++END +EAI+A+P LF+ T I+TY+WI++N+K Sbjct: 347 GIVFNGSPLFTGDAGSGESNIRKWIIENDWLEAIIAMPDQLFYNTGISTYIWIITNKKEA 406 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIIND------DQRRQILDIYVSRENGK------ 463 R+GK+QLI+A + +R G KR II D D I I+ + + Sbjct: 407 HRKGKIQLIDARQFYNKMRKSLGNKRNIIGDGEDNRFDHISLITRIHSDFIDNQELEFTC 466 Query: 464 --------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL------SP 509 S++ D + FGY++I V RPLR++F + + +ARL+ + T+ KL P Sbjct: 467 NGTTKTAIVSKIFDNKDFGYQKITVERPLRLNFQVSQERIARLDNNTTFAKLVESKKKDP 526 Query: 510 LHQSFWLDILKPMMQQI--------YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561 + + +D K + +I + + + A + Sbjct: 527 IEKQREMDAGKALQDRIKAALNSMDGSIIYMNREQYLKALRQALLQHHLSLGNPELKAIL 586 Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621 A +D AD D G DT L + ENVP E I YF REV PHVPDA+I Sbjct: 587 EALSERDETADICRDSKGMPEADTELRDTENVPLKEDIDTYFKREVLPHVPDAWI----- 641 Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668 D ++GYEI FNR FY YQP R L+ I+AEL +E +I LL Sbjct: 642 ---DYSKTKIGYEIPFNRHFYVYQPPRGLEVIEAELFNIEKEIEALL 685 >gi|114563774|ref|YP_751287.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400] gi|114335067|gb|ABI72449.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400] Length = 683 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 297/700 (42%), Positives = 402/700 (57%), Gaps = 51/700 (7%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + + A +W A+ L GDFK + +G++ILPFTLLRRLEC LE T+ V KY A Sbjct: 1 MTNNFSQTAALLWSVADILRGDFKQSQYGRIILPFTLLRRLECVLEATKPDVLAKYEAVK 60 Query: 64 GS--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + A SFYNTS+ L LG +NLESYI SFS NA+ IFE FDF Sbjct: 61 AMPLEAQDKLLTHTAQLSFYNTSKMDLHRLGEMGIASNLESYIQSFSPNAREIFEHFDFF 120 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +TI +L +A LLYK+ K F+ L P+ + + M ++E LIRRF +E A + TPR Sbjct: 121 NTIDKLAEADLLYKVAKQFANAPLSPENISNYGMGLVFEELIRRFAESSNETAGEHFTPR 180 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+V L T+L+ DD + ++ G++R++YDPT GTGGFL+ M ++ + L Sbjct: 181 DIVRLTTSLVFSNDDDVLTQA-GLVRSIYDPTAGTGGFLSSGMEYLHELNEKA----SLS 235 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 GQEL PE++A+C A MLI+ + D NI+ G+TLS DL +F Y LSNPPF Sbjct: 236 AFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDLLRNDKFDYMLSNPPF 288 Query: 302 GKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G W+K + + E+ G GRFG GLP++SDGS+LFLMHL +K+ GG R I+L Sbjct: 289 GVDWKKIQKFINTEYTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPKHEGGSRIGIIL 348 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 + SPLF G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+WILS+ K Sbjct: 349 NGSPLFTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWILSSNKGASHNG 408 Query: 419 --RGKVQLINATD-----------------------LWTSIRN-EGKKRRIINDDQRRQI 452 +GKVQLINA+ + +R G KR+ + +D I Sbjct: 409 ARKGKVQLINASKERAKTGGRGRSGGGESDEVVENIFYAPMRKSLGSKRKELTEDGIETI 468 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLH 511 + Y FS++ DY FGYRRI V RPL+++ + D+T +A L+AD W KL Sbjct: 469 VKTYGQFIENDFSKIFDYHVFGYRRITVERPLQLAIYPKDQTRVAALQADNAWDKLDQAV 528 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571 Q +D L + ++F+KE +K K +K S + G D A Sbjct: 529 QYSVIDSLAGFTED--KLLSRDAFLKELMK----KLNGIKLSSVQQKLIVKHLGEHDDDA 582 Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631 G + +L ++ENVP ESI YF REV PHVP+A+IDK D KD E+G V Sbjct: 583 QLC-KAKGRVEANPDLRDFENVPLTESIYKYFDREVIPHVPNAWIDKTKTDPKDHEVGIV 641 Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 GYEI FNR FY+Y R+L+DIDA+L V +I LL E+ Sbjct: 642 GYEIPFNRHFYEYASPRELEDIDADLDIVSTEIMQLLNEV 681 >gi|260427933|ref|ZP_05781912.1| N-6 DNA methylase [Citreicella sp. SE45] gi|260422425|gb|EEX15676.1| N-6 DNA methylase [Citreicella sp. SE45] Length = 673 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 399/675 (59%), Positives = 502/675 (74%), Gaps = 6/675 (0%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ T + +LA+FIWKNA+DLWG+FKHTDFGK+ILPFTLLRRLEC LEPTR A + Sbjct: 1 MSQETKNNTTLADFIWKNADDLWGNFKHTDFGKIILPFTLLRRLECVLEPTREATLQAVE 60 Query: 61 AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 F GS ID+ ++ GY FYNTS Y+L++LG+T TR NLE YI FSDNA+ IF+ FD Sbjct: 61 NFKGSGIDMGVLLRQQTGYPFYNTSSYTLASLGATRTRQNLEDYIGQFSDNARVIFDQFD 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F +T+AR+++AG+LYKIC NF+ ++LHP+ VP+R MSN+YEHLIR+FG+EV+E AEDFMT Sbjct: 121 FINTVARMDRAGVLYKICLNFAAMDLHPEAVPERTMSNVYEHLIRKFGAEVNEAAEDFMT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRDVVHLA LLL+PDD LF++ G+IRTLYDPTCGTGGFL+D M HVA+ K+ P+ Sbjct: 181 PRDVVHLAIELLLEPDDELFRQDEGLIRTLYDPTCGTGGFLSDGMEHVANLRDRFKVAPV 240 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 ++P+GQELEPETHAVC+A ML++ +ESDP RDLSKNI+ GSTLS D ++FHYC+SNP Sbjct: 241 IIPYGQELEPETHAVCLASMLLKTVESDPGRDLSKNIKLGSTLSDDKHRSEKFHYCVSNP 300 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFGKKWE D+ AV +EHK GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI Sbjct: 301 PFGKKWEMDQAAVTREHKEQQFEGRFGPKLPRVSDGSMLFLLHLLSKLETPENGGGRAAI 360 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VLS SPLFNG AG GESEIRR LLE D++E+I+ALP ++FFRT I+TY+WILSN+K R Sbjct: 361 VLSGSPLFNGNAGQGESEIRRHLLEQDVVESIIALPQEIFFRTGISTYIWILSNKKPAHR 420 Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GKVQLINAT L+ +R G KRR + ++Q R+I+ +Y E K S +LD FGYRR Sbjct: 421 KGKVQLINATGLYEPLRKSEGNKRRKVGEEQTREIVRMYSDFEASKESLILDSTEFGYRR 480 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 IKVLRPLR ++ + G+A + + W K S Q+ WLD+ + M + + W ESF K Sbjct: 481 IKVLRPLRKKMVISEDGIAAVADEKAWEKRSAEQQAAWLDLFRENMDREEGWHWMESFAK 540 Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597 S K +A K + I AF AFG +DP D V D G IPD +LT++ENVP Sbjct: 541 NSAKRTDALG---KVDAALIKAFQKAFGVRDPELDEVVDKKGNVIPDDDLTDFENVPLGT 597 Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657 I+DY EV PH DAYID+ F DE D IG VGYEINFNR+FY+YQP R+L+DIDAEL Sbjct: 598 DIRDYLAAEVLPHAEDAYIDETFRDETDGGIGIVGYEINFNRYFYEYQPPRELEDIDAEL 657 Query: 658 KGVEAQIATLLEEMA 672 K VEA+IA +L E+ Sbjct: 658 KAVEAEIAGMLAEVT 672 >gi|251791802|ref|YP_003006523.1| N-6 DNA methylase [Dickeya zeae Ech1591] gi|247540423|gb|ACT09044.1| N-6 DNA methylase [Dickeya zeae Ech1591] Length = 708 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 261/728 (35%), Positives = 382/728 (52%), Gaps = 79/728 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--A 61 + LANFIW L G +K ++ KVILP T+LRR EC LEPTR ++ Sbjct: 2 NGETHRQLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQDALAEFQWLK 61 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLST---------LGSTNTRNNLESYIASFSDNAK 112 + ++ GY FYN S L+ N NL SYI FS N + Sbjct: 62 TKPERVQQARLQQITGYRFYNLSRMQLTLSGENIHSLLDDPNNLAPNLNSYINGFSANVR 121 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 AI E F FS I + + +L+++ K F+ I+L P V M ++E LIR + +E Sbjct: 122 AIMERFKFSEQITHMAEKNILFEVVKAFAKIDLSPQRVDQMQMGYVFEELIRIGAEQSNE 181 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TPR+V+ L LLL P++ L K +++T+YDP CGTGG L+ A ++ S Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEEDLAKSD--VVKTIYDPACGTGGMLSVAEEYIRHLNS 239 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR- 291 + +GQ+ E AVC + MLI+ ++D NI G T ++D F Sbjct: 240 DARP----HLYGQDWNDEAWAVCKSDMLIKGEDAD-------NIILGDTFTRDGFDRDSD 288 Query: 292 -----FHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANK 345 F Y L+NPPFG +W++ + ++KE + G GRFG G P+I+DG++LFL H+ +K Sbjct: 289 GNKWIFDYMLANPPFGVEWKQQQKYIQKEADELGYAGRFGAGTPRINDGALLFLQHMISK 348 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 + G R IV + SPLF G AGSGESEIRRW++END +EAIVALP LF+ T IAT Sbjct: 349 MRPVNKDGSRIGIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIAT 408 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND--------DQRRQILDIY 456 Y+W+++NRK +ER+GKVQLI+A + W + ++ G KRR I D + +I IY Sbjct: 409 YIWVITNRKAKERKGKVQLIDARNFWVPMEKSLGNKRRRIGDPQDRPKDPNHIAEITRIY 468 Query: 457 VSRENGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + ++G+ S++ D FGY +I V RPLR++F +ARLE Sbjct: 469 ENFQDGETRTFFLDGKEKELVVSKLFDNDDFGYHKITVERPLRLNFQATAERIARLEEQT 528 Query: 503 TWRKLSPLH-----------------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 ++ L+ + Q ++L Q + + + Sbjct: 529 AFKNLASSNKKNETVRQQEIEAGRARQQEIRNLLADFADQHGDTLYKDRKLFLLALREVD 588 Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605 + +K S + + A I A G +D A+ D GE DT+L + E VP ESI++YF R Sbjct: 589 RARNIKLSAAELKAVIAALGERDETAEICKDKKGEPEADTDLRDTETVPLKESIEEYFQR 648 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV HVPDA+ID ++GYEI NR FY+Y+ R+L +I+AE+KG+E++I Sbjct: 649 EVLLHVPDAWIDYAK--------TKIGYEIPLNRHFYRYEEPRELTEIEAEIKGLESEIL 700 Query: 666 TLLEEMAT 673 LL+E+ Sbjct: 701 ELLKEVTA 708 >gi|291287372|ref|YP_003504188.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809] gi|291287881|ref|YP_003504697.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809] gi|290884532|gb|ADD68232.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809] gi|290885041|gb|ADD68741.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809] Length = 639 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 306/668 (45%), Positives = 420/668 (62%), Gaps = 35/668 (5%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + AN IW A+ L GDFK ++G++ILPF +LRRLEC LEPTR +V E+Y A + Sbjct: 3 QQTFANKIWSVADLLLGDFKQAEYGRIILPFMVLRRLECVLEPTRESVLEQYEAVKDQGL 62 Query: 68 DLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 DL+ + +AG +FY TS+++LSTLG+TNT+ NLE YI+ FS N + +FE F FSS I + Sbjct: 63 DLDLILPGIAGCTFYTTSKFTLSTLGATNTKQNLEDYISKFSSNVRQVFEQFSFSSWIGK 122 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 LE+A LLY + F +ELHP V + M ++EHLIR+F ++ A +F TPRDVV L Sbjct: 123 LEEANLLYLVSNEFKDLELHPSVVSNYEMGLVFEHLIRKFAEASNDTAGEFYTPRDVVRL 182 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 AT L+ D G++RT+YD GTGGFL+ + V + ++ ++P+ QE Sbjct: 183 ATTLVFSTDQEALS-GEGIVRTIYDCAAGTGGFLSSGIELVGEWNTNA----TIIPYAQE 237 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 L PETHA+CVA LI+ + ++NI+ G+TLS DL +G+ F+YCL+NPPFG W+ Sbjct: 238 LNPETHAICVADKLIQGYD-------TRNIKFGNTLSNDLLSGETFNYCLANPPFGVDWK 290 Query: 307 KDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 K + V EH+ G GRFGPGLP++SDGSMLFL+HL +K + P GG R IVLS SPL Sbjct: 291 KVQKPVNDEHRVKGYAGRFGPGLPRVSDGSMLFLLHLLSKRKPPEEGGTRIGIVLSGSPL 350 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 FNG AGSGESEIRRW+LEND +EA+VALPTD+F+ T I+TY+W+LS K E R+G VQLI Sbjct: 351 FNGGAGSGESEIRRWILENDWLEALVALPTDMFYNTGISTYIWVLSTNKEEHRKGLVQLI 410 Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484 +A+ + T +R N G KR+ +ND+Q + I+ + E S++ + FGYRRI V RPL Sbjct: 411 DASKISTPMRKNLGSKRKWLNDEQITETARIHDAFEESDVSKIFETEQFGYRRITVERPL 470 Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544 ++ F + + S + + + + Y +SF+K + Sbjct: 471 QLKFSVTPENIES------------WANSKNAEYVDELSKVSGEYLDIDSFLKAAGIK-- 516 Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604 K S + I FG+ P A + D G +PD +L +YENVP E I +YF Sbjct: 517 ------KPSAALIKNICKFFGKHYPDAKVICDAKGNPLPDPDLRDYENVPLGEDIDEYFE 570 Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664 REV PHVPDA+ID D KD +G VGYEINFNR+FY+Y P R L+DIDA+L+ VE I Sbjct: 571 REVIPHVPDAWIDTAKKDHKDGLVGIVGYEINFNRYFYEYVPPRSLEDIDADLEAVENAI 630 Query: 665 ATLLEEMA 672 A LL+++ Sbjct: 631 AELLKKVT 638 >gi|134097472|ref|YP_001103133.1| type I restriction-modification system methyltransferase subunit [Saccharopolyspora erythraea NRRL 2338] gi|133910095|emb|CAM00208.1| type I restriction-modification system methyltransferase subunit [Saccharopolyspora erythraea NRRL 2338] Length = 652 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 272/676 (40%), Positives = 398/676 (58%), Gaps = 41/676 (6%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 AN W A+ L GD+K +D+GKVILPFT+LRRLEC L+PTR V E + ++D ++ Sbjct: 2 ANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLKPTRGKVLETVEKYRNRDLDPDT 61 Query: 72 FVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128 F++ +G+ FYNT+ +L ++ + + NL YI FS NA + E +DF+ I +L+ Sbjct: 62 FLRKASGHRFYNTTPLTLKSIVADSSHVARNLTQYIGGFSPNAYEVLERYDFAQQIKKLD 121 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 A LLYK+ F+ ++L P+ V + M I+E LIRRF + +E A + TPR+V+ L Sbjct: 122 GANLLYKVTSTFADLDLRPEVVDNHQMGYIFEELIRRFAEQSNETAGEHFTPREVIELMV 181 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 LL+ PDD PG+IR + DP CGTGG L+ A H+ + + +GQEL Sbjct: 182 NLLIAPDDEALS-KPGVIRRVLDPACGTGGMLSAAYEHITTMNADATVE----VYGQELN 236 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 PE+ A+C + ++I+ + D NI+ G++ S D + FHY L+NPPFG +W+K Sbjct: 237 PESWAICRSDLMIKDQDPD-------NIKFGNSFSDDGHYRRTFHYLLANPPFGVEWKKV 289 Query: 309 KDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 K+ VE + + GE RF P LP+I+DGS+LFL H+ +K+ +GGGR AIV + SPLF Sbjct: 290 KEDVEGDLEQLGENSRFWPALPRINDGSLLFLQHMLSKMNSVEDGGGRVAIVFNGSPLFT 349 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 G AGSGES+IR+ +LEND +EA+VALP LF+ T I+TY WIL+NRK+ + +GKV L++A Sbjct: 350 GAAGSGESQIRQHILENDWLEAVVALPDQLFYNTGISTYFWILTNRKSPDYKGKVVLLDA 409 Query: 428 TDLWTSIRN-EGKKRRIINDDQRRQILDIY-----VSRENG----KFSRMLDYRTFGYRR 477 + W +R G KR+ + DQ +I +Y V+++ ++ + FGYRR Sbjct: 410 REYWQKMRKSLGDKRKYVASDQIAEITRLYAEALQVAKDENHPLHGKVKVFENDDFGYRR 469 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 I V RPL++ F + LA L +KL Q ++ L+P++ Q + W ++ Sbjct: 470 ITVERPLKLRFEFTEEILASLGEAKQIQKLDDPEQ--FVAALRPLLGQTW---WKKTEAW 524 Query: 538 ESIKSN-EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 ++K A L +F A +A G +DP + GE PD L +YENVP Sbjct: 525 LALKDAIVAAGLTWPTGAAFNKALRDAIGVRDPEGEVQI-AKGETEPDPELRDYENVPLD 583 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 + ++DY REV PHVPDA+ID ++GYEI F R FY Y+P R L +IDAE Sbjct: 584 QDVEDYLEREVLPHVPDAWIDHTK--------TKIGYEIPFTRHFYVYEPPRPLAEIDAE 635 Query: 657 LKGVEAQIATLLEEMA 672 LK +EA+I LL E+ Sbjct: 636 LKALEAEIQELLGEVT 651 >gi|21243627|ref|NP_643209.1| type I restriction-modification system DNA methylase [Xanthomonas axonopodis pv. citri str. 306] gi|21109202|gb|AAM37745.1| type I restriction-modification system DNA methylase [Xanthomonas axonopodis pv. citri str. 306] Length = 685 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 394/674 (58%), Positives = 495/674 (73%), Gaps = 12/674 (1%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S LA+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLEC LEPTR VRE + F Sbjct: 16 ASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRDVVRETHAKFKDK 75 Query: 66 NIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 +D + ++ AG FYNTS+YSL+TLG+T T++NLE+Y+A+FSDNA+ IF+ F+F+ TI Sbjct: 76 GLDTDLILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSDNARVIFDQFNFTDTI 135 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 ARL +A +L+KIC+NF+ +LHPD VPDRVMSNIYEHLIRRFGSEV+E AEDFMTPRDVV Sbjct: 136 ARLARADILFKICQNFANTDLHPDVVPDRVMSNIYEHLIRRFGSEVNEAAEDFMTPRDVV 195 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 HLAT LLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMN+V + K PP+L+P G Sbjct: 196 HLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDGFAAQGKAPPVLIPFG 255 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGK 303 QELEPETHAV +A ML+RRLE++P RDLS N+ STLS+D + G+RFHYCLSNPPFGK Sbjct: 256 QELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYAGQRFHYCLSNPPFGK 315 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 KWEKD+ VE+E K G GRFG G P++SDGSMLF+ HL +KLE P GGGRAAI+LS Sbjct: 316 KWEKDQAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLEHPNKGGGRAAIILSG 375 Query: 363 SPLFNGRAGS---GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 SPLF G AG ES+IRRWLLE D +E IVALP D+FFRT I TY+W+L+N K E+RR Sbjct: 376 SPLFTGTAGGHGHSESQIRRWLLEKDYVETIVALPNDIFFRTGIGTYIWLLTNNKPEDRR 435 Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 GK+QLI+AT++ + +R EG KRR ++D Q + I +Y G+ R++DYR FGYRRI Sbjct: 436 GKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGENVRIVDYRDFGYRRI 495 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 KV RPLR+ + + GLA L + KL QS WL +L+ + Q YPY W Sbjct: 496 KVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHLGQTYPYTW-----FA 550 Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598 ++ + K K +K+ A +A G +D +A V D +G + D +L ++E VP + Sbjct: 551 TLPALAKKAGLPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLEDFETVPLDQP 610 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 I Y EV PHV DA++D F D++D + G+VGYEINFNR+FY+Y P R L +ID+ELK Sbjct: 611 IDTYMAAEVLPHVSDAWVDASFTDDEDGQRGKVGYEINFNRYFYKYVPPRDLHEIDSELK 670 Query: 659 GVEAQIATLLEEMA 672 VEA+IA LL+E+A Sbjct: 671 AVEAEIAALLDEVA 684 >gi|148360830|ref|YP_001252037.1| putative type I restriction enzyme M protein [Legionella pneumophila str. Corby] gi|148282603|gb|ABQ56691.1| Putative type I restriction enzyme HindVIIP M protein [Legionella pneumophila str. Corby] Length = 676 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 279/690 (40%), Positives = 391/690 (56%), Gaps = 34/690 (4%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 E +L+ F W AE L GDFK +++GKVILPF +LRRL+C LEP++ AV Y Sbjct: 3 NENNKKIQNLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILEPSKDAVISAYEN 62 Query: 62 FGGSNIDL--ESFVKVA---GYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKA 113 D + + A G YN + + S + + NL YI SF+ + + Sbjct: 63 LPEGIDDHTKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDVHKNLLDYITSFNSSVRD 122 Query: 114 IF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF E F F+ + RL+ G+L+++ F I+LHPD V + M ++E LIRRF +E Sbjct: 123 IFLEKFLFTDQLKRLKDGGILWQVFDRFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNE 182 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TPR+V+ L LLL D G+IRT+YDP CGTGG L + + S Sbjct: 183 TAGEHFTPREVIRLIVDLLLINDAEALA-GSGIIRTVYDPACGTGGMLALMEEAMKEYNS 241 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 ++ +GQEL PE+ +C + ML+ + I G+TL++D K+F Sbjct: 242 KIRVE----LYGQELNPESFGICTSDMLVTGHNP-------EQIAFGNTLTEDAHKDKKF 290 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 HY LSNPP+G W+K +D +++E + G GRFG GLP+ISDG +LFL H+ +K+ Sbjct: 291 HYMLSNPPYGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMRDD-E 349 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G R IV++ SPLF G AGSGESEIRRW+ END +EAI+ALPTDLF+ T I TY+W+L+ Sbjct: 350 VGSRIGIVMNGSPLFTGGAGSGESEIRRWMFENDWVEAIIALPTDLFYNTGIQTYVWMLT 409 Query: 412 NRKTEERRGKVQLINAT--DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG-----K 463 N+K + RRGKVQLI+A+ W S+R G KRR I+D R +I+ IY NG + Sbjct: 410 NKKDKNRRGKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSE 469 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 FS++ D + FGYR I++ RPLR++F K L L+ + T+ KLS + Q L L Sbjct: 470 FSKIFDRQEFGYREIRIERPLRLNFEGSKERLELLQQENTFLKLSEIEQQELLTALN--- 526 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 + E K L K + A + KD AD D G P Sbjct: 527 HNTLKQQFKNRDAFEKALKTALKNLSFKLTAPLKKAILTTLSEKDETADICCDAKGNPEP 586 Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 DT+L ++E VP E ++Y REV P V DA++D+ D D ++GRVGYEINFNR+FY+ Sbjct: 587 DTDLRDHELVPLKEDWREYVEREVKPFVADAWVDENHKDATDGKVGRVGYEINFNRYFYK 646 Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 Y P R + +I+ ELK +EA+IA LL+E+ Sbjct: 647 YVPPRPVAEINEELKQLEAEIANLLKEVVA 676 >gi|256375105|ref|YP_003098765.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827] gi|255919408|gb|ACU34919.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827] Length = 670 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 271/693 (39%), Positives = 392/693 (56%), Gaps = 49/693 (7%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + LAN W A+ L GD+K +D+GKVILPFT+LRRLEC L PT+ V E F Sbjct: 2 NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLTPTKDKVLETAERFA 61 Query: 64 GSNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 +D + F++ +G+SFYNTS Y+L + +T+ L Y+ +FS NA+ + E ++F Sbjct: 62 DREMDPDRFLRKASGHSFYNTSTYTLKAIAGDATHAAKYLNEYLGAFSPNAREVLERYEF 121 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + +L+ A LLY++ F+ ++L P+ V + M I+E LIRRF + +E A + TP Sbjct: 122 AQQVKKLDAADLLYQVLGRFADLDLRPEVVTNHQMGYIFEELIRRFAEQSNETAGEHFTP 181 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+V+ L LL+ PD + PG +RT+ DP CGTGG L+ A + + Sbjct: 182 REVIDLMVKLLIAPDSDVLSV-PGAVRTVLDPACGTGGMLSAAEEEITKHNKDATVK--- 237 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 GQEL PE+ A+C + M+I+ + +NI+ G++ S D F Y L+NPP Sbjct: 238 -VFGQELNPESWAICRSDMMIKGQDP-------ENIKFGNSFSDDSHAHATFDYVLANPP 289 Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL---PPNGGGRA 356 FG W+K ++ VE+EHK GE GRFG GLP+I+DGS+LFL H+ +K++ GG R Sbjct: 290 FGVDWKKVQETVEREHKMLGESGRFGAGLPRINDGSLLFLQHMISKMKPVDVDGKGGSRV 349 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIV + SPLF G A SGES+IRRW+LEND +E IVALP LF+ T I TY WI+SNRK++ Sbjct: 350 AIVFNGSPLFTGAADSGESKIRRWILENDWLEGIVALPDQLFYNTGIFTYFWIVSNRKSK 409 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVS----------------R 459 R+GKV L++A D W +R G KR++IN+ Q +I +Y R Sbjct: 410 GRQGKVVLLDARDYWQKMRKSLGDKRKMINEQQISEITRLYTEALAILDAEKNDQMHDLR 469 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 G+ ++ FGYRRI V RPL++ F + + L L A +K + + L Sbjct: 470 NKGRKIKLFRNEDFGYRRITVERPLKLRFKVTEETLFALRAAKPVQKTTDAE--MFTAAL 527 Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579 +P++ + + + + A L F +A G +DP + V + G Sbjct: 528 RPLIGK--SWLKKTEAWLDMKDAIVAAGLLWPTGVPFAKVLRDAVGVRDPEGE-VQKIKG 584 Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639 E PD+ L +YENVP E + +Y REV PH PDA+ID+ ++GYEI F R Sbjct: 585 EPEPDSELRDYENVPLDEDVDEYLRREVLPHAPDAWIDRTK--------TKIGYEIPFTR 636 Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 FY+YQP R L +IDAELK +EA+I LL ++ Sbjct: 637 HFYEYQPPRPLPEIDAELKSLEAEIKLLLHKVT 669 >gi|297157212|gb|ADI06924.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1] Length = 698 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 268/721 (37%), Positives = 388/721 (53%), Gaps = 77/721 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + LAN W A+ L GD+K +D+GKVILPFT+LRRLEC L PT+ V E + Sbjct: 2 NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLAPTKDKVLEVAARYQ 61 Query: 64 GSNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G +I+ + F++ +G+SFYNTS Y+L + +++ L Y +FS NA+ + E +DF Sbjct: 62 GQDINPDRFLRIASGHSFYNTSTYTLKAIAGDASHVAKYLNEYYGAFSPNAREVLERYDF 121 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP------------------DTVPDRVMSNIYEHL 162 + I RLE A LLY++ F+ ++L P + V + M I+E L Sbjct: 122 AQQIKRLETANLLYQVVGRFADLDLRPVKRDADGKVVLGEDGKPVEIVSNHQMGYIFEEL 181 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 IRRF + +E A + TPR+V+ L LL+ PD PG +RT+ DP CGTGG L+ Sbjct: 182 IRRFAEQSNETAGEHFTPREVIRLMVNLLVAPDSDALAL-PGTVRTVMDPACGTGGMLSA 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A + + GQEL PE+ A+C + M+I+ + +NI+ G++ Sbjct: 241 AEERITALNPDATVK----VFGQELNPESWAICRSDMMIKGQDP-------ENIKFGNSF 289 Query: 283 SKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKI 331 S+D F+ F Y L+NPPFG +W+K KDAVE EH+ GE GRFG GLP+I Sbjct: 290 SQDGFSRDDSRRDKNTPTTFDYLLANPPFGVEWKKVKDAVEDEHERLGESGRFGAGLPRI 349 Query: 332 SDGSMLFLMHLANKLEL---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 +DGS+LFL H+ +K++ GG R AIV + SPLF G A SGES IR+W+LE+D +E Sbjct: 350 NDGSLLFLQHMISKMKPVDASGAGGSRIAIVFNGSPLFTGAAESGESRIRQWILEHDWLE 409 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDD 447 IVALP LF+ T I+TY W+LSNRK +RRGKV L++A D W +R G KR+ ++D Sbjct: 410 GIVALPDQLFYNTGISTYFWVLSNRKARDRRGKVVLLDARDYWQKMRKSLGDKRKELSDQ 469 Query: 448 QRRQILDIYVS----------------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +I +Y + ++ FGYRRI V RPL++ F + Sbjct: 470 HISEITRLYTDALAVVDAAERGSGHDLADRAGKIKVFRNEDFGYRRITVERPLKLRFEVT 529 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 + L+ + A + + ++ L+P++ + + + + A L Sbjct: 530 EETLSAITASKPIARATDAE--AFVAALRPLVGK--SWTTKSDAWIDLKDAVVAAGLLWP 585 Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHV 611 F A A G +DP + G+ PD L +YENVP E +++Y REV PHV Sbjct: 586 TGAPFSKALREAVGVRDPEGEEQ-KAKGQPEPDPELRDYENVPLGEDVEEYLRREVLPHV 644 Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 PDA+ID +VGYEI R FY Y+P R L +IDA+LK +E++I LL E+ Sbjct: 645 PDAWIDHTK--------TKVGYEIPVTRHFYVYKPPRPLAEIDADLKALESEIQALLGEV 696 Query: 672 A 672 Sbjct: 697 T 697 >gi|296106106|ref|YP_003617806.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99 Alcoy] gi|295648007|gb|ADG23854.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99 Alcoy] Length = 676 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 278/690 (40%), Positives = 395/690 (57%), Gaps = 34/690 (4%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 E +L+ F W AE L GDFK +++GKVILPF +LRRL+C LE ++ AV + Y Sbjct: 3 NENNKKIQNLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILETSKDAVVKAYEN 62 Query: 62 FGGSNIDL--ESFVKVA---GYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKA 113 D + + A G YN + + S + + NL YI SF+ + + Sbjct: 63 LPEGIDDHTKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDIHKNLLDYITSFNSSVRD 122 Query: 114 IF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF E F F+ + RL+ G+L+++ F I+LHPD V + M ++E LIRRF +E Sbjct: 123 IFLEKFLFTDQLKRLKDGGILWQVFDLFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNE 182 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TPR+V+ L LLL D G+IRT+YDP CGTGG L + + S Sbjct: 183 TAGEHFTPREVIRLIVDLLLINDADALA-GSGIIRTVYDPACGTGGMLALMEEAMKEYNS 241 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 ++ +GQEL PE+ +C + ML+ + I G+TL++D K+F Sbjct: 242 KIRVE----LYGQELNPESFGICTSDMLVTGHNP-------EQIAFGNTLTEDAHKDKKF 290 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 HY LSNPP+G W+K +D +++E + G GRFG GLP+ISDG +LFL H+ +K+ Sbjct: 291 HYMLSNPPYGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMRDD-E 349 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G R IV++ SPLF G AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+L+ Sbjct: 350 VGSRIGIVMNGSPLFTGGAGSGESEIRRWMLENDWVEAIIALPTDLFYNTGIQTYVWMLT 409 Query: 412 NRKTEERRGKVQLINAT--DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG-----K 463 N+K + RRGKVQLI+A+ W S+R G KRR I+D R +I+ IY NG + Sbjct: 410 NKKDKNRRGKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSE 469 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 FS++ D + FGYR I++ RPLR++F K L L+ + T+ KLS + Q L L Sbjct: 470 FSKIFDRQEFGYREIRIERPLRLNFEGSKERLELLQQEKTFLKLSEIEQQELLTALNHNT 529 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 + + ++F K L K + A + KD AD D G P Sbjct: 530 LK-QQFKNRDAFEKT--LKTTLNNLSFKLTAPLKKAILTTLSEKDETADVCCDAKGNPEP 586 Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 DT+L ++E VP E ++Y REV P V +A++D+ D D ++GRVGYEINFNR+FY+ Sbjct: 587 DTDLRDHELVPLKEDWREYVEREVKPFVANAWVDENHKDATDGKVGRVGYEINFNRYFYR 646 Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 Y P R + +ID ELK +E++IA LL+E+ Sbjct: 647 YVPPRPVAEIDEELKQLESEIANLLKEVIA 676 >gi|296330134|ref|ZP_06872616.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673378|ref|YP_003865050.1| Type I restriction-modification system methyltransferase subunit (HsdM) [Bacillus subtilis subsp. spizizenii str. W23] gi|296152723|gb|EFG93590.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411622|gb|ADM36741.1| Type I restriction-modification system methyltransferase subunit (HsdM) [Bacillus subtilis subsp. spizizenii str. W23] Length = 670 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 257/687 (37%), Positives = 377/687 (54%), Gaps = 43/687 (6%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--G 64 + +FIW AE L G +K D+GK+ILP +LRR +C LE T+ V K F Sbjct: 3 NFQDKVSFIWSIAEILRGPYKPEDYGKIILPLAVLRRFDCVLESTKEEVLAKAEQFATMK 62 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + +V+ +F+NTS+Y + L S N +NL YI FS A+ I + FDF Sbjct: 63 EDAREQILNRVSKQNFHNTSKYDFNKLLTDSDNIADNLRDYINGFSKVARDIMDHFDFDR 122 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I +LE+ LLY K FS I+LHP+TV + M ++E LIRRF + A D TPR+ Sbjct: 123 QIDKLEQNNLLYLTIKRFSEIDLHPETVSNIEMGYVFEELIRRFNE--NAEAGDHYTPRE 180 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L T LL DDA PG+ +TLYD GTGG + A ++ + Sbjct: 181 VIRLMTHLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLLSQNPTAHLE----F 236 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQE+ PE++A+C A +LI+ + ++NI+ G+TLSKD F +F Y +SNPP+G Sbjct: 237 FGQEINPESYAICKADLLIKGED-------ARNIRLGNTLSKDQFPRDKFDYLISNPPYG 289 Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358 W+ + +++EH+ G GRFGPG P+ SDG +LFLMHL +K++ G R AI Sbjct: 290 VDWKSYEKPIKEEHEKQGFNGRFGPGTPRTSDGQLLFLMHLLSKMKPVTAENPQGSRLAI 349 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +++ SPLF G AGSGESEIR++LLENDL+E IVALP DLF+ T IATY+WIL+N K Sbjct: 350 IMNGSPLFTGDAGSGESEIRKYLLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLH 409 Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GKV+L+NA D ++ R I ++Q +I+ +Y + ++ ++ D FGY + Sbjct: 410 KGKVRLVNAVDFSKKMKKSMGSKRNEITEEQINEIVRLYGDAQPNEYVKIFDNEDFGYAK 469 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQIYP---- 528 I V RPLR++F +++ LAR+ + L+ + F ++ K + QI Sbjct: 470 ITVERPLRLNFQVNEERLARVAEGKGFANLATSKKKGDAGHFEIEEGKKLQTQILYVLRT 529 Query: 529 ----YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 + + + K + + A + KD AD + PD Sbjct: 530 LESETVYKNRDEFTKVLKDALKQAGITIGAPVLKAILAGLSEKDETADICMKNKTDIEPD 589 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 T+L + ENVP E+I DYF REV PHVPDA+I D+ ++GYEI F R FY+Y Sbjct: 590 TDLRDTENVPLKENIHDYFAREVLPHVPDAWI--------DETKTKIGYEIPFTRQFYKY 641 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671 R +I E++ +EA+I L+++ Sbjct: 642 TALRSSTEIMDEIRALEAEIVEQLKKV 668 >gi|110681176|ref|YP_684183.1| type I restriction-modification system DNA methylase, putative [Roseobacter denitrificans OCh 114] gi|109457292|gb|ABG33497.1| type I restriction-modification system DNA methylase, putative [Roseobacter denitrificans OCh 114] Length = 677 Score = 725 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 399/680 (58%), Positives = 494/680 (72%), Gaps = 10/680 (1%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ SLA+FIWKNA+DLWGDF+HT+FGK+ILPFTLLRRLEC L PTR VRE Sbjct: 1 MSDAQTKNTSLADFIWKNADDLWGDFRHTEFGKIILPFTLLRRLECVLAPTREEVRETVK 60 Query: 61 AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 G S ID++ ++ G+ FYNTS Y L +LG+T TR NLE YI+ FSDNA+ IFE FD Sbjct: 61 NLGDSGIDMDVILRQQTGFPFYNTSNYDLRSLGATRTRANLEDYISQFSDNARVIFEQFD 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F++TIAR+++AG+LYKIC+NF+ I+LHPDTVP+R MSN+YEHLIRRFG+EV+E AEDFMT Sbjct: 121 FANTIARMDRAGVLYKICQNFAAIDLHPDTVPERTMSNVYEHLIRRFGAEVNEAAEDFMT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRDVVHLA LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV + + I P+ Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRNLQDRYSIAPV 240 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 ++P+GQELEPETHAVC+AGML++ LE+DP RDLSKNI GSTLS D ++FHYC+SNP Sbjct: 241 IIPYGQELEPETHAVCLAGMLLKTLETDPGRDLSKNIALGSTLSADKHRPEKFHYCVSNP 300 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFGKKWEKD+ V +EHK G GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI Sbjct: 301 PFGKKWEKDQADVTREHKEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLESPENGGGRAAI 360 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +LS SPLFNG AG GESEIRR LLE D++EAI+ALPT++FFRT I TY+WILSN K R Sbjct: 361 ILSGSPLFNGNAGQGESEIRRHLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNDKPAHR 420 Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GKVQLINAT+++ +R G KRR + + Q R I+ +Y E K S +L FGYRR Sbjct: 421 KGKVQLINATEMYEPMRKSEGNKRRRVGEQQTRDIVQMYADFEATKQSLILSAPDFGYRR 480 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 IKVLRPLR ++ GLA L + W K + ++ W + M + W E+F K Sbjct: 481 IKVLRPLRKKIVISAEGLATLADEKAWEKRTEAQRAGWTALFNDHMGAEEGWHWIEAFAK 540 Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY-- 595 ++K + KA + I AF A G DP DPVTD G+ IPD +LT++ENVP Sbjct: 541 NAVKRDADLG---KADVALIKAFRKALGVHDPELDPVTDKKGQIIPDDDLTDFENVPLAA 597 Query: 596 --LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653 I Y EV+PH DAYID+ + DE D +IG GYEINFNR+FY+Y P R L +I Sbjct: 598 DGTADIHGYLAAEVTPHAHDAYIDETYRDESDGQIGIKGYEINFNRYFYEYLPPRDLDEI 657 Query: 654 DAELKGVEAQIATLLEEMAT 673 DAELK VEA+IA +L E+A Sbjct: 658 DAELKAVEAEIAAVLAEVAG 677 >gi|114320943|ref|YP_742626.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1] gi|114227337|gb|ABI57136.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1] Length = 725 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 259/741 (34%), Positives = 379/741 (51%), Gaps = 96/741 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L + IW+ A L G ++ + V+LP +LRRL+C LEPT+ AV ++Y + Sbjct: 6 HDQLKSHIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKEAVLKQYEKLSAQGM 65 Query: 68 DLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 + K+ G + YNTS + L S N NL +YI FS A+AIFE Sbjct: 66 PENAMEKLLGKAADPDRTHPLYNTSPFIFEKLLGDSENIAPNLVAYINGFSPTARAIFER 125 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F F+ I +L+ + L+ I K S ++LHPD + + M ++EHL+ RF + +E A D Sbjct: 126 FKFTDQIEKLDASNRLFTIVKAMSEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDH 185 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L L+ + ++ PG+ RT+YDP CGTGG L+++ + D S + Sbjct: 186 FTPREVIRLMANLVYTGEQDVYT--PGIYRTIYDPACGTGGMLSESEKFILDQNSQANL- 242 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRFH 293 GQE E+ A+C + MLI+ + + +I G TL D F GK+FH Sbjct: 243 ---ALFGQEYNDESWAICCSDMLIKDED-------TSSIVLGDTLGDGKTRDGFEGKQFH 292 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 Y L+NPPFG +W+ K VEKEHK G GRFG GLP I+DGS+LFL H+ K+ G Sbjct: 293 YLLANPPFGVEWKDQKTVVEKEHKEMGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYKEG 352 Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP LF+ T I TY+ Sbjct: 353 DDDSVGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYV 412 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK--- 463 W+++NRK ERRGKVQLI+ T + ++ KR + +DQ R + +Y + +G+ Sbjct: 413 WLVTNRKAPERRGKVQLIDGTRFFQRMKKSLNNKRNEVTEDQIRDLTRLYGNNRDGETAE 472 Query: 464 -----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 SR+ + R FG+ ++ V RPLRM+F +ARL+ + L+ + Sbjct: 473 VRINGDTETRVVSRIFENREFGFLKVTVERPLRMNFEASPERIARLDEQTAFANLATSKK 532 Query: 513 --------------SFWLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKASKSFI 557 + ++ ++ + P G + + V E+ + AK +K Sbjct: 533 RKNEAAAAKEIAEGQKQQEAIRALLASLAPKGQYTDRAVFEADLNAAAKVASLKLPVPIK 592 Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------------- 598 A NA G +DP A+ D G PD+ L + EN+P E Sbjct: 593 KAIFNALGERDPDAEICRDSKGRPEPDSELRDTENIPLPEGTQLPLPMQFGPDKPNDKLV 652 Query: 599 ------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652 I Y REV PHV DA++ D +VGYEI NR FY Y+P R L + Sbjct: 653 TAFRAEIDAYMAREVLPHVDDAWV--------DYSKTKVGYEIPINRHFYVYKPPRPLDE 704 Query: 653 IDAELKGVEAQIATLLEEMAT 673 I+ E+ +E +IA LL + Sbjct: 705 IEQEITELEGEIAGLLRGLVG 725 >gi|189499715|ref|YP_001959185.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1] gi|189495156|gb|ACE03704.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1] Length = 686 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 265/695 (38%), Positives = 386/695 (55%), Gaps = 33/695 (4%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E ++ +F+W A+ L G FK ++F K+ILPFT+LRRL+ ALE T++ V E Sbjct: 1 MNEP-AKFNNVVSFLWAIADLLNGAFKKSEFQKIILPFTVLRRLDYALEKTKAKVLETEH 59 Query: 61 AFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 ++ + AGY+FYNTS+++ +L TN NL Y+ FS N + IF Sbjct: 60 TLKAKGLENRHGQLCRAAGYAFYNTSKFNYESLLHDDTNLALNLRQYVMGFSPNVREIFA 119 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 F+F TI L + LLY + + F+ +L P ++ + M ++EHL+R+F ++E Sbjct: 120 AFNFDDTIRDLGRVNLLYLLMERFNEKSKVDLRPASMSNHEMGYVFEHLLRKFNEALNEN 179 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 + TPRD + L L+L D+ + G+ RT+YD CGTGG L+ HV Sbjct: 180 PGEHFTPRDAIRLMVDLVLM-LDSELAGTEGIPRTVYDCGCGTGGILSITKEHVLQINPQ 238 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 K+ +GQEL P T A+ A MLI +P ++NI+ GSTLS D + RF Sbjct: 239 AKVF----LYGQELNPFTWAIARADMLI----LEPEGKDAENIKCGSTLSDDQLSDMRFD 290 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 NPP+G +W KD DAV E G GRFG G P+ SDG MLFL HL ++ P Sbjct: 291 LQFVNPPYGYEWSKDYDAVTAEAARGFDGRFGAGTPRKSDGQMLFLQHLIARMNDPEESQ 350 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 I+L+ SPLF G A SGESEIRRW++END +EAIVA+P LF+ T I TY+W+LSNR Sbjct: 351 SYIGIILNGSPLFTGGAASGESEIRRWIMENDWLEAIVAMPQQLFYNTGIGTYIWLLSNR 410 Query: 414 KTEERRGKVQLINAT--DLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 K + +GKV L++A+ + W+ + ++ G KRR I +D ++ IL++ R+ G ++ D Sbjct: 411 KPAKHKGKVMLVDASGEEFWSGMSKSLGSKRREITEDHKQAILNLVKVRKEGPHVKLFDT 470 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI------------ 518 FGYR IKVLRPL++ F ++ LARL+A +R L+ + + Sbjct: 471 TDFGYREIKVLRPLKLRFTVNAESLARLDAQAAFRNLAVSKKKAAAEQKREEQEGLALQA 530 Query: 519 -LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 ++ +Q + + + K +K + A + G +D A+ D Sbjct: 531 EIRNTLQTLAGKTYTCRDKFTTALDAALKKAGLKLKAPVLKAILAGIGERDDAAEVCRDK 590 Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 +G PDT+L + ENVP E ++ YF REV+PHVPDA+ID + D KD ++GRVGYEI F Sbjct: 591 DGNPEPDTDLNDTENVPLKEKVETYFAREVTPHVPDAWIDPAYCDAKDGQVGRVGYEIPF 650 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 NR FY +QP R L IDA+LK +I ++ + Sbjct: 651 NRHFYVFQPPRLLSAIDADLKTSTDRILNMIGGLT 685 >gi|288553770|ref|YP_003425705.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification system [Bacillus pseudofirmus OF4] gi|288544930|gb|ADC48813.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification system [Bacillus pseudofirmus OF4] Length = 670 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 259/689 (37%), Positives = 375/689 (54%), Gaps = 43/689 (6%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--G 64 + +FIW AE L G +K D+GKVILP +LRR +C L+ T+ V F Sbjct: 3 NFQDKVSFIWSIAEILRGPYKPEDYGKVILPLAVLRRFDCVLDSTKEEVLASAEKFASMN 62 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 +VA +F+NTS+Y + L S N +NL YI FS A+ I + FD Sbjct: 63 EEAREPILNRVAKQNFHNTSKYDFNKLLSDSDNIADNLRDYINGFSKTARDIMDHFDLER 122 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I +LE LLY K FS I+LHP+ V + M I+E LIRRF + A D TPR+ Sbjct: 123 QIDKLETNNLLYLTIKRFSEIDLHPEVVSNVEMGYIFEELIRRFNE--NAEAGDHYTPRE 180 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L T LL DDA PG+ +TLYD GTGG + A ++A ++ Sbjct: 181 VIRLMTHLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLASVNFSAQLE----F 236 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQE+ E++A+C A +LI+ + +KNI+ G+TLS D F +F Y +SNPP+G Sbjct: 237 FGQEINGESYAICKADILIKGAD-------AKNIRLGNTLSNDQFPYDKFDYLISNPPYG 289 Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358 W+ + + EH+ G GRFGPG P+ SDG LFL++L +K++ G R AI Sbjct: 290 VDWKSYQKPIVDEHEKQGFNGRFGPGTPRTSDGQFLFLLNLLSKMKPVTAENPQGSRLAI 349 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +++ SPLF G AGSGESEIR+++LENDL+E IVALP DLF+ T IATY+WIL+N K R Sbjct: 350 IMNGSPLFTGDAGSGESEIRKYVLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLR 409 Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GKV+L+NA D + ++ R I ++Q I+ +Y + G++ ++ D FGY + Sbjct: 410 KGKVELVNAVDFYKKMKKSMGSKRNEITEEQINNIVSLYGDFQEGEYVKIFDNEDFGYAK 469 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQI------ 526 I V RPLR++F +++ + ++ + + L+ + ++ K + QI Sbjct: 470 ITVERPLRLNFQVNEERIVKITEEKGFMNLATSKKKGEAGLKEIEAGKELQTQIIKVLRN 529 Query: 527 --YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 + I + K ++ + A +N KD ADP E PD Sbjct: 530 LASDEIYKNREAFTKILKDAFKEAEITVGAPVLKAILNGLSEKDETADPCIKNKTEMEPD 589 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 T+L + ENVP ESI DYF REV PHVPDA+I D+ ++GYEI F R FY+Y Sbjct: 590 TDLRDTENVPLRESIHDYFEREVLPHVPDAWI--------DETKTKIGYEIPFTRQFYKY 641 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 + R Q+I E++ +EA+IA LE++ Sbjct: 642 KALRGSQEIMEEIRVLEAEIAEQLEKVMG 670 >gi|299068120|emb|CBJ39335.1| type I restriction-modification methylase M subunit, N-6 DNA Methylase [Ralstonia solanacearum CMR15] Length = 641 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 309/671 (46%), Positives = 417/671 (62%), Gaps = 37/671 (5%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +LA IW A+ L GDF+ ++FG+VILPF +LRRLEC LEPT+ V +Y GS+ Sbjct: 2 NQQNLAADIWNIADTLRGDFRQSEFGRVILPFAVLRRLECVLEPTKREVLAQYETVKGSS 61 Query: 67 IDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 IDL+ + A +FYNTS++SL+TLGST+TR NLE Y++ FS NA+ +FE F+F + Sbjct: 62 IDLDLLLPATAKATFYNTSQFSLATLGSTSTRANLEDYVSKFSSNARQVFEHFEFGKWLE 121 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +LEKA LL+ + + FS +LHP+T+ + M +EHLIR+F ++ A +F TPRDVV Sbjct: 122 KLEKANLLFLVAQKFSVFDLHPETISNHEMGLAFEHLIRKFAESANDTAGEFFTPRDVVR 181 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L T L+ D G+IRT+YD GTGGFL+ + V + ++ +P+ Q Sbjct: 182 LVTTLVFATDHDALTGD-GVIRTVYDCAAGTGGFLSTGIEQVNEWNPSARL----IPYAQ 236 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL PET+A+CVA LI+ + +KNI+ G+TLS D +RF YCL+NPPFG KW Sbjct: 237 ELNPETYAICVADKLIQGYD-------TKNIKLGNTLSTDQLRNERFDYCLANPPFGVKW 289 Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSS 362 EK + V+ EH N G GRFGPGLP++ DGS+LFLMHL +K + + G R IVLS Sbjct: 290 EKVQKEVQAEHVNEGYGGRFGPGLPRVGDGSLLFLMHLLSKRKPVNANSKGTRIGIVLSG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLFNG A SGESEIRRW+LEND +EAIV LPTDLF+ T I TY+W+LSN KT ER+ V Sbjct: 350 SPLFNGGAASGESEIRRWILENDWLEAIVGLPTDLFYNTGIGTYIWVLSNNKTPERKNLV 409 Query: 423 QLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLI+AT + + + ++ G KR+ ++++Q I I + + S++ FGYRRI V Sbjct: 410 QLIDATGMHSPMQKSLGSKRKRLSEEQIADIARIQAAMSDNGVSKLFKTTDFGYRRITVE 469 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 RPLRM F +A A + L+ + + +K Sbjct: 470 RPLRMRFEATDARVANFNAVTG---------DAYAAALENIRGTFKS-------IAALLK 513 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601 S K K +K+ + A G KDP A P+ D G + D +L E+ENVP E I + Sbjct: 514 STGIK----KLTKAHLKELTTAMGIKDPDAQPMKDEKGNVMADPDLREFENVPLGEDIYE 569 Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661 Y +EV PHVPDA+ID+ DEKD E+G VGYEINFNR+FYQYQP R L DIDA+LK +E Sbjct: 570 YLDKEVLPHVPDAWIDESKKDEKDGEVGIVGYEINFNRYFYQYQPPRALADIDADLKAIE 629 Query: 662 AQIATLLEEMA 672 A+IA LL E+ Sbjct: 630 AEIAGLLGEVT 640 >gi|74318698|ref|YP_316438.1| type I restriction-modification system methyltransferase subunit [Thiobacillus denitrificans ATCC 25259] gi|74058193|gb|AAZ98633.1| type I restriction-modification system methyltransferase subunit [Thiobacillus denitrificans ATCC 25259] Length = 676 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 254/688 (36%), Positives = 370/688 (53%), Gaps = 42/688 (6%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + S L+NFIW A+ L G ++ + +V+LP +LRR +C LE T+ AV KY Sbjct: 13 TAMSKSH-ELSNFIWSIADLLRGPYRPPQYERVMLPLVVLRRFDCVLESTKDAVLAKYAQ 71 Query: 62 FGGS---NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 + G + K++G F+N S S L N +L SYI FS+N + IFE Sbjct: 72 YQGKLEGDALDGVLNKISGQRFHNHSPLSFEKLKGDPDNAHLHLVSYINGFSENVRKIFE 131 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F+F + I R+ + +L+ + K F ++LHP V + M ++E LIRRF + +E A D Sbjct: 132 RFEFGNEIERMREHNILFLVIKKFCEVDLHPGAVDNIEMGLLFEDLIRRFNEQANETAGD 191 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPR+V+ L +LL DD L PG +R + DPTCGTGG L++ ++ + S ++ Sbjct: 192 HFTPREVIRLMVSLLFMHDDDLLS-KPGTVRKMLDPTCGTGGMLSETRKYLREHQSGARL 250 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +GQ+ P ++AV + +L+R ++ + I+ G TL D F G+RF Y L Sbjct: 251 F----VYGQDFNPRSYAVAASDLLLR---TNLADAETSTIKFGDTLIDDQFPGERFDYFL 303 Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352 +NPPFG W++ + V +EH K G GRFG G P+++DG++LFL H+ +K E Sbjct: 304 ANPPFGVDWKRQQKDVVREHEKQGFAGRFGAGTPRVNDGALLFLQHMVSKFEPVDPANNL 363 Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G R AIV + SPLF G AGSGESEIR+W++END +EAIVA+P +F+ T I TY+W+++ Sbjct: 364 DGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVAMPEQMFYNTGIGTYVWVVT 423 Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 NRK RRG++QLI+ D W S+R G KRR +D I+ Y + S++ D Sbjct: 424 NRKEARRRGRIQLIDGRDRWQSLRRSLGDKRREFSDAHITDIVREYGDMRDNATSKVFDN 483 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 FGY R+ + RPLR++F + R L+ L+ + + I Sbjct: 484 ADFGYNRLTIERPLRLAFQITLERKERFLDACP----------ELLNDLQAIDKAIGREA 533 Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV----NGEWIPDTN 586 + K K I AF AF +P+A+PV E+ PD Sbjct: 534 SLDWNAIWKQAQLTLKERDSKWRAPQIKAFREAFTEINPKAEPVIAKKAGGKVEYEPDPK 593 Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 L ++ENVP E ++ YF V PHV DA+ID +VGYEINFNR FY++ Sbjct: 594 LRDFENVPLTEDVEAYFEHGVRPHVADAWIDHAK--------TKVGYEINFNRHFYRFTL 645 Query: 647 SRKLQDIDAELKGVEAQIATLLEEMATE 674 R L +IDA+LK E +I LL E+ E Sbjct: 646 PRPLAEIDADLKRAEEEIVRLLREVTAE 673 >gi|260557401|ref|ZP_05829616.1| type I restriction-modification system, M subunit [Acinetobacter baumannii ATCC 19606] gi|260409027|gb|EEX02330.1| type I restriction-modification system, M subunit [Acinetobacter baumannii ATCC 19606] Length = 761 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 280/773 (36%), Positives = 407/773 (52%), Gaps = 116/773 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + +A+FIW A L GDFK + +G++ILPFTLLRRLEC LE +++AV ++ Sbjct: 1 MTNN--NFSQIASFIWSVANLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHE 58 Query: 61 AFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 N+ E+ G +F+NTS LS +G ++ + NL +Y+ SFS +A+ IF Sbjct: 59 KVSKLNLPEEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIF 118 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E F+F L+ A LLYK+ + F+ +L P V + M ++E LIRRF +E A Sbjct: 119 EYFNFIEFAGLLDDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNETAG 178 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPRD+V L TAL+ DD + + G+IRT+YDPT GTGGFL+ M ++ + + Sbjct: 179 EHFTPRDIVRLTTALVFMEDDDVLTKD-GIIRTIYDPTAGTGGFLSSGMEYLHELNPNA- 236 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ GQEL PE++A+C A MLI+ + I+ G+TLS D +F Y Sbjct: 237 ---VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLAVDQFDYM 286 Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNG 352 LSNPPFG W+K + ++ EH+ G GRFG GLP++SDGS+LFLMHL +K+ Sbjct: 287 LSNPPFGVDWKKIEQDIKDEHEHKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSSES 346 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN Sbjct: 347 GSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSN 406 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSR------------ 459 +K ER+GKVQLINA++L T +R G KR + +++ I Y + Sbjct: 407 KKAAERKGKVQLINASNLSTKMRKSLGSKRNYLTENEIATITQNYGAFVAVDTLANDGET 466 Query: 460 --ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----------------- 500 + S++ D FGYRR+ + RPLR+S + + +A L Sbjct: 467 EQQKPFASKIFDNHEFGYRRVTIERPLRLSAQITDSAIAALRFAPKPFNAVMQSIDAQLG 526 Query: 501 --------------------------DITWRKLSPLH------------QSFWLDILKPM 522 + +L Q ++ + + Sbjct: 527 TAFGTAWTAESYGQLQDVALEVRAMIKAEFPELKEKDIKEVLDSKIWLFQKALMEKAEAL 586 Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD------ 576 + I + + + + K +K ++A K+P A+PV + Sbjct: 587 QEVIGTEQFDDFNQFDEVLKKALKQADIKLDAKEKKQLLDAITWKNPEAEPVINKVLKQA 646 Query: 577 ------------VNGEWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDK 618 E++ D +L + EN+ E I+DYF REV PHV DA+I+ Sbjct: 647 ENPLYGQFSYQGKVVEFVQDGDLRDAENIALNPKVSTTELIEDYFKREVQPHVADAWINA 706 Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 DEKD EIG VGYEI FNR FY Y+P R L +IDA+L V A+I LL+E+ Sbjct: 707 DKRDEKDGEIGIVGYEIPFNRHFYVYEPPRDLSEIDADLDAVSAEIMQLLQEV 759 >gi|331650480|ref|ZP_08351552.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Escherichia coli M605] gi|331040874|gb|EGI13032.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Escherichia coli M605] Length = 781 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 285/789 (36%), Positives = 403/789 (51%), Gaps = 134/789 (16%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + + +A F+W A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV + Sbjct: 3 STNFSQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETTKDAVITEAKKVKA 62 Query: 65 SNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + E+ G +F+N S LS +G ++NLE+YI SFS +A+ IFE F Sbjct: 63 MKLPEEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHFK 122 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 FS + +L A LL+K+ + F+ +L+P+ V + M ++E LIRRF +E A + T Sbjct: 123 FSEFVGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHFT 182 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+V+L T+L+ DD + G+IRT+YDPT GTGGFL+ M V + + Sbjct: 183 PRDIVNLTTSLVFFDDDDALNKD-GIIRTIYDPTAGTGGFLSSGMEFVHQQNPNA----V 237 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + GQEL PE++A+C A MLI+ + I+ G+TLS D ++F Y LSNP Sbjct: 238 MRAFGQELNPESYAICKADMLIKGQDVSL-------IKLGNTLSNDQLPAEKFDYMLSNP 290 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG W+K + + EHK G GRFGPGLP++SDGS+LFL+HL +K+ +GGGR I Sbjct: 291 PFGVDWKKIETDINDEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIGI 350 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +L+ SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+WILSN+K ER Sbjct: 351 ILNGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWILSNKKAPER 410 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE----------------- 460 +GKVQLI+ ++L +R G KR I+ ++ I + E Sbjct: 411 KGKVQLIDGSNLCGKMRKSLGSKRNILGEEDIGLITRTFGDFEPVATTTLAALGLEKAPE 470 Query: 461 -----------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--- 500 S++ FGYRRI V RPLR+S + +A L Sbjct: 471 QKSSRGRQPATTKTEAAKTFASKVFHSTDFGYRRITVERPLRLSAQISDHAIATLRFAPK 530 Query: 501 -----------------------------------------DITWRKLSPLHQSFWLDIL 519 ++ +++ L S Sbjct: 531 PFNAPMAQLYDAFAFQWQDGNYGDLTAVESEARAILKADFSELKEKQIKDLLDSKLWLAQ 590 Query: 520 KPMMQQI-------------YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 + +M++ + + +T VK FI+A R Sbjct: 591 RGLMEKARRIQAAMGMQAGGKDTVSNDFNQFQLTLKEALRTAGVKLDAKENKQFIDAITR 650 Query: 567 KDPRADPVT------------------DVNGEWIPDTNLTEYENVPYL------ESIQDY 602 K+P A+PV E+ PD +L + ENVP E I+ Y Sbjct: 651 KNPDAEPVVSKVLKEAAQPLYGACEYNGKVVEFEPDGDLRDNENVPLNPAVSTSELIEGY 710 Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662 F EV PHV DA+I+ D KD +IG VGYEI FNR FY YQP R L++IDA+L V A Sbjct: 711 FKAEVLPHVADAWINADKRDAKDGDIGIVGYEIPFNRHFYVYQPPRPLEEIDADLDAVSA 770 Query: 663 QIATLLEEM 671 +I LL+E+ Sbjct: 771 EIMKLLQEV 779 >gi|332974852|gb|EGK11767.1| N-6 DNA methylase [Psychrobacter sp. 1501(2011)] Length = 801 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 285/804 (35%), Positives = 404/804 (50%), Gaps = 146/804 (18%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + ++ +LA FIW A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+ Sbjct: 8 TRQSQTSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQK 67 Query: 62 FGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 ++ E+ K G +FYNTS +L+ +G ++ NL YI SFS +A+ IF Sbjct: 68 VSAMGLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFA 127 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F F + +L A LLYK+ + F I+L P+ V + M ++E LIRRF +E A + Sbjct: 128 HFKFEEFVGQLNDANLLYKVVQKFMNIDLSPEAVSNYEMGLVFEELIRRFAESSNETAGE 187 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPRD+V L T+L+ DD G+IRT+YDPT GTGGFL+ M +V + + Sbjct: 188 HFTPRDIVRLTTSLVFMEDDDAL-IKDGIIRTIYDPTAGTGGFLSSGMEYVLELNPNA-- 244 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 ++ GQEL PE++A+C A MLI+ E I+ G+TLS D +F Y L Sbjct: 245 --VMRAFGQELNPESYAICKADMLIKGQEV-------SRIKLGNTLSDDQLPADKFDYML 295 Query: 297 SNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352 SNPPFG W+K ++ EH+ G GRFGPG P++SDGS+LFL+HL +K+ + Sbjct: 296 SNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPGQSHSNA 355 Query: 353 ------------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 G R I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+F+ Sbjct: 356 SLEAPSNDTAITGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPTDMFYN 415 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSR 459 T IATY+W+L+N K ER+GKVQLI+ T+L++ +R G KR ++++ + I + Sbjct: 416 TGIATYVWVLTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITRTFGDF 475 Query: 460 E-----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490 E S++ D FGYRR+ + RPLR+S + Sbjct: 476 EVVDARELDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLRLSAQM 535 Query: 491 DKTGLARLEADI-------------------------------------------TWRKL 507 + L + +L Sbjct: 536 SDEAIESLRYAERTYDLVMPALYEKFGEQWTEDTYGEFGDLSSDIQVEARAMIKADFSEL 595 Query: 508 SPLHQSFWLD------------ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555 LD K + Q+I + + + + K + S Sbjct: 596 KEKQIKEVLDSKLWREQLAVMNAAKTLQQEIGTEQFDDYNQFDVVFKQAIKDTGLDLSAK 655 Query: 556 FIVAFINAFGRKDPRADPV-----------------TDVNG-----EWIPDTNLTEYENV 593 +NA K+P A+ V TD G E+ D++L +YEN+ Sbjct: 656 DRKQILNAVTWKNPEAERVVKKSVKEANPLYGAFEITDSKGKAKIVEFETDSDLRDYENI 715 Query: 594 PYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647 P E I+ YF REV PHV DA+ID D D+EIG VGYEI FNR FY Y+P Sbjct: 716 PLNPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGIVGYEIPFNRHFYVYEPP 775 Query: 648 RKLQDIDAELKGVEAQIATLLEEM 671 R L +IDA+L V A+I LL E+ Sbjct: 776 RPLSEIDADLDKVSAEIMQLLSEV 799 >gi|308171853|ref|YP_003915183.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] gi|307743225|emb|CBQ74048.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] Length = 653 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 258/672 (38%), Positives = 365/672 (54%), Gaps = 33/672 (4%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 A FIW A+ L G+FK +G ILPFT+LRRL+ L T+S V E + + Sbjct: 5 ATFIWGIADLLRGNFKAHQYGDFILPFTVLRRLDSVLADTKSKVLEVVAEADAKGLSVRP 64 Query: 72 FVKVAG----YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + +SFYNTS+Y L TL + N R NL SYI +FS+N + IF + I Sbjct: 65 VLLKTKAGHQHSFYNTSQYDLGTLIGDAENLRENLLSYINAFSENVRDIFVKYKIEDRIE 124 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 LE+ LL + + F+ ++LHP V + M +I+E LIR+F +E A + TPR+V+ Sbjct: 125 ELEENNLLLLVIQRFAEVDLHPKHVSNDKMGHIFEELIRKFAEASNETAGEHFTPREVIE 184 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL + DD ++R++YDPT GTGG L+ A +H+ ++ GQ Sbjct: 185 LMVDLLFENDDEAL-RDEDIVRSVYDPTAGTGGMLSVAEDHLTAMNPRARL----TLAGQ 239 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL P+++A+C A M+I+ D I TL D G F+YCLSNPPFG W Sbjct: 240 ELNPQSYAICKADMVIKGQSVDA-------IVNDDTLRHDGHAGTTFNYCLSNPPFGVDW 292 Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGGRAAIVLSS 362 +K + AV +EH + G GRFGPGLP++SDGSMLFL+HL +K+ P + GGRAAIVL+ Sbjct: 293 KKQEKAVREEHAEKGFAGRFGPGLPRVSDGSMLFLLHLISKMREPAHGSAGGRAAIVLNG 352 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGES IR+W+LE D +EAI+ALPTD+F+ T I+TY+W+LS K+ ERR KV Sbjct: 353 SPLFTGGAGSGESNIRKWILERDYLEAIIALPTDMFYNTGISTYIWVLSKEKSPERRNKV 412 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QL++ + L+ +R G KR + + + I+ +Y S++ + F YR I V Sbjct: 413 QLVDGSKLFRKMRKGLGSKRNELGPEDIQAIVRLYGDFTETDQSKIFNTTDFFYRTITVE 472 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 RPL+++F + A KL+ D+ + W + Sbjct: 473 RPLKLNFATTTERIDTALAAKPLGKLTA---DAVADLRTALDSMDATVLWKNRDNFTTGL 529 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601 K V+ S + A I ++D AD T + PD L + ENVP+ E I Sbjct: 530 KRTLKATGVELSTPQLKALIAGLSKRDDTADVCTGPKSKIEPDAELRDTENVPWNEDIHA 589 Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661 Y RE+ P VPDA++ D+E + G EI F R FYQY P R L++IDA+L V Sbjct: 590 YIEREIKPFVPDAWL--------DEEKTKEGCEIPFTRHFYQYIPPRPLEEIDADLDAVL 641 Query: 662 AQIATLLEEMAT 673 +I LE++ Sbjct: 642 GRIRARLEQVKA 653 >gi|331666003|ref|ZP_08366897.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Escherichia coli TA143] gi|331057054|gb|EGI29048.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Escherichia coli TA143] Length = 781 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 283/789 (35%), Positives = 404/789 (51%), Gaps = 134/789 (16%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + + +A F+W A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV + Sbjct: 3 STNFSQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETSKDAVIAEAQKVKA 62 Query: 65 SNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + E+ G +F+N S LS +G ++NLE+YI SFS +A+ IFE F Sbjct: 63 MKLPEEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHFK 122 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 FS + +L A LL+K+ + F+ +L+P+ V + M ++E LIRRF +E A + T Sbjct: 123 FSEFVGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHFT 182 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+V+L T+L+ DD + G+IRT+YDPT GTGGFL+ M +V + + Sbjct: 183 PRDIVNLTTSLVFFDDDDALNKD-GIIRTIYDPTAGTGGFLSSGMEYVHKQNPNA----V 237 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + GQEL PE++A+C A MLI+ + I+ G+TLS D ++F Y LSNP Sbjct: 238 MRAFGQELNPESYAICKADMLIKGQDVSL-------IKLGNTLSNDQLPAEKFDYMLSNP 290 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG W+K + + EHK G GRFGPGLP++SDGS+LFL+HL +K+ +GGGR I Sbjct: 291 PFGVDWKKIETDINNEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIGI 350 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +L+ SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+W+LSN+K ER Sbjct: 351 ILNGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWVLSNKKAPER 410 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE----------------- 460 +GKVQLI+ ++L +R G KR I+ ++ I + E Sbjct: 411 KGKVQLIDGSNLCGKMRKSLGSKRNILGEEDIGLITRTFGDFEPVATTTLAALGLEKAPE 470 Query: 461 -----------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--- 500 S++ FGYRRI V RPLR+S + +A L Sbjct: 471 QKSSRGRQPATTKTEAAKTFASKVFHSTEFGYRRITVERPLRLSAQISDDAIATLRFAPK 530 Query: 501 -----------------------------------------DITWRKLSPLHQSFWLDIL 519 ++ +++ L S Sbjct: 531 PFNAPMAQLYDAFAFQWQDGNYGDLTAVESEARAILKADFSELKEKQIKDLLDSKLWLAQ 590 Query: 520 KPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 + +M++ A + + +T VK FI+A R Sbjct: 591 RGLMEKARRIQAAMRMLAGGKETVSNDFNQFQLTLKEALRTAGVKLDAKENKQFIDAITR 650 Query: 567 KDPRADPVT------------------DVNGEWIPDTNLTEYENVPY------LESIQDY 602 K+P A+PV E+ D +L + ENVP E I+DY Sbjct: 651 KNPDAEPVISKVLKEAPQPLYGAFEYHGKVVEFESDGDLRDNENVPLNPAVSTNELIEDY 710 Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662 F EV PHV DA+I+ D KD +IG VGYEI FNR FY Y P R L++IDA+L V A Sbjct: 711 FKAEVLPHVADAWINADKRDAKDGDIGIVGYEIPFNRHFYVYTPPRPLEEIDADLDAVSA 770 Query: 663 QIATLLEEM 671 +I LL+E+ Sbjct: 771 EIMKLLQEV 779 >gi|294637840|ref|ZP_06716111.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Edwardsiella tarda ATCC 23685] gi|291089014|gb|EFE21575.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Edwardsiella tarda ATCC 23685] Length = 798 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 293/798 (36%), Positives = 409/798 (51%), Gaps = 141/798 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC L T+ AV KY Sbjct: 13 MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 70 Query: 61 AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 S + E+ ++ +G SF+NTS+ L +G + + NLE+YI +FS +A+ IFE Sbjct: 71 ELKTSPLPEEAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLENYIQAFSPDAREIFE 130 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F FS + LE A LL+K+ K F+ +L P + + M ++E LIRRF +E A + Sbjct: 131 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 190 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPRD+V L T+L+ DD + G+IRT+YDPT GTGGFL+ M +V + + Sbjct: 191 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 247 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 ++ GQEL PE++A+C A MLI+ + I+ G+TLS D +F Y L Sbjct: 248 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 298 Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351 SNPPFG W+K + + EH + G GRFGPGLP++SDGS+LFLMHL +K+ N Sbjct: 299 SNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGS 358 Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GGR I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI Sbjct: 359 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 418 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK----- 463 LSN+K ER+GKVQLI+AT+L +R G KR ++ DD + I + + + Sbjct: 419 LSNQKAAERKGKVQLIDATNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVVETTTLE 478 Query: 464 -----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 S++ + FGYRR+ + RPLR+S + Sbjct: 479 ELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 538 Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510 +A L A++ +++ L Sbjct: 539 IATLRFAPKPFNAPMERLYDEFAAQWQAETYGDFSGLEAEARAIIKAEFAELKEKQIKDL 598 Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557 S + +M++ A + + KT VK Sbjct: 599 LDSKLWLAQRALMEKAQQIQTALATQAGGKTRVSNDFNQFKLTLKEAIKTAGVKLDAKEN 658 Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES- 598 FI+A K+P A+PV G E+ D L + ENVP + Sbjct: 659 KQFIDAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAL 718 Query: 599 -----IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653 I++Y EV PHV DA+I+ D KD E+G VGYEI FNR FY YQP R L++I Sbjct: 719 STSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLEEI 778 Query: 654 DAELKGVEAQIATLLEEM 671 DA+L V A+I LL+E+ Sbjct: 779 DADLDAVSAEIMKLLQEV 796 >gi|91776954|ref|YP_546710.1| N-6 DNA methylase [Methylobacillus flagellatus KT] gi|91710941|gb|ABE50869.1| N-6 DNA methylase [Methylobacillus flagellatus KT] Length = 728 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 256/745 (34%), Positives = 382/745 (51%), Gaps = 99/745 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + IW+ A L G ++ + V+LP +LRRL+C LEPT+ V ++Y N Sbjct: 5 THEVLKSTIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKDKVLKQYEKLTAQN 64 Query: 67 IDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 + + ++ G + YNTS ++ L N NL SYI FS A+ IFE Sbjct: 65 MPESAMERLLGRAADPKRNHPLYNTSPFTFERLLGDPENIAPNLVSYINGFSPTARTIFE 124 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F F+ I +L+ + L+ I K + ++LHPD + + M ++EHL+ RF + +E A D Sbjct: 125 RFKFTDQIEKLDASNRLFTIVKAMADVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGD 184 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPR+V+ L L+ + ++ PG+ RT+YDP CGTGG L+++ + D + Sbjct: 185 HFTPREVIRLMANLVYTGEKDVYT--PGIFRTIYDPACGTGGMLSESEKFILDQNRQANL 242 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRF 292 GQE E+ A+C + MLI+ + + +I G TL D F G++F Sbjct: 243 ----ALFGQEYNDESWAICCSDMLIKDED-------TSSIVLGDTLGDGKTRDGFEGEKF 291 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 HY L+NPPFG +W+ K VEKEHK G GRFG GLP I+DGS+LFL H+ +K+ Sbjct: 292 HYMLANPPFGVEWKDQKTIVEKEHKELGFAGRFGAGLPAINDGSLLFLQHMISKMHPYKA 351 Query: 352 G-----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP LF+ T I TY Sbjct: 352 GDENAVGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIYTY 411 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-- 463 +W+++NRK ERRGKVQLI+ T ++ KR I +DQ R++ +Y + +G+ Sbjct: 412 VWLVTNRKAPERRGKVQLIDGTRFCQRMKKSLNNKRHEITEDQIRELTRLYGNFRDGETA 471 Query: 464 ---------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 SR+ + R FG+ ++ V RPLRM+F +ARL+A + L+ Sbjct: 472 EVVIDHKTGEKETRVVSRIFENREFGFLKVTVERPLRMNFEASAERIARLDAQSAFANLA 531 Query: 509 PLHQSF--------------WLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKAS 553 + D ++ ++ + G + + V E+ AK VK + Sbjct: 532 TSKKRKDDKAAAREIAAGREQQDAIRNLLVSLEAKGRYRDRKVFEADLDKAAKAAGVKLA 591 Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES--------------- 598 A A G +DP A+ D G PD+ L + EN+P Sbjct: 592 GPIKKAIFAALGERDPEAEICRDAKGRPEPDSELRDTENIPLPAGIVLPLPMDFGPDKPN 651 Query: 599 ----------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 I Y +EV PHVPDA++D +VGYEI NR FY Y+P R Sbjct: 652 DRLIESFRDVIDAYMAKEVLPHVPDAWVDYDK--------TKVGYEIPINRHFYVYKPPR 703 Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673 LQ+I+A+++ +E +IA LL+ + Sbjct: 704 PLQEIEADIRQLEGEIADLLKGLLA 728 >gi|290512140|ref|ZP_06551507.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55] gi|289775135|gb|EFD83136.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55] Length = 795 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 293/798 (36%), Positives = 406/798 (50%), Gaps = 141/798 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC L T+ AV KY Sbjct: 10 MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 67 Query: 61 AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 S + ++ ++ + SF+NTS+ L +G + + NLESY+ +FS +A+ IFE Sbjct: 68 ELKTSPLPEDAKEKFLLRASTLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFE 127 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F FS + LE A LL+K+ K F+ +L P + + M ++E LIRRF +E A + Sbjct: 128 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 187 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPRD+V L T+L+ DD PG+IRT+YDPT GTGGFL+ M +V + + Sbjct: 188 HFTPRDIVRLTTSLVFMEDDEALT-QPGIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 244 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 ++ GQEL PE++A+C A MLI+ + I+ G+TLS D +F Y L Sbjct: 245 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPLDQFDYML 295 Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351 SNPPFG W+K + + EH + G GRFGPGLP++SDGS+LFLMHL +K+ N Sbjct: 296 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDGT 355 Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GGR I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI Sbjct: 356 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 415 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460 LSN+K ER+GKVQLI+ T+L +R G KR ++ DD + I + E Sbjct: 416 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGDDDIKLITKTFGDFEVVDATTLE 475 Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 S++ + FGYRR+ + RPLR+S + Sbjct: 476 ELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 535 Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510 +A L A++ +++ L Sbjct: 536 IATLRFAPKPFNAPMERLYDEFASQWHEENYGDFSELEAEARAIIKAEFAELKEKQIKDL 595 Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557 S + +M++ A + + KT VK Sbjct: 596 LDSKLWLSQRGLMEKAQQIQTALGTQAGGKTLVSNDFNQFQLPLKGAIKTAGVKLDAKEN 655 Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL--- 596 FI+A K+P A+PV G E+ D L + ENVP Sbjct: 656 KQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPTV 715 Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653 + I++YF EV PHV DA+I+ D KD E+G VGYEI FNR FY YQP R L +I Sbjct: 716 STSDLIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLSEI 775 Query: 654 DAELKGVEAQIATLLEEM 671 DA+L V A+I LL+E+ Sbjct: 776 DADLDAVSAEIMKLLQEV 793 >gi|255320276|ref|ZP_05361461.1| N-6 DNA methylase [Acinetobacter radioresistens SK82] gi|255302715|gb|EET81947.1| N-6 DNA methylase [Acinetobacter radioresistens SK82] Length = 761 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 278/769 (36%), Positives = 404/769 (52%), Gaps = 114/769 (14%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + +A+FIW A+ L GDFK + +G++ILPFTLLRRLEC LE +++AV ++ Sbjct: 3 NNNFSQIASFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHEKVSK 62 Query: 65 SNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 N+ E+ G +F+NTS LS +G ++ + NL +Y+ SFS +A+ IFE F+ Sbjct: 63 LNLPEEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIFEYFN 122 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F L A LLYK+ + F+ +L P V + M ++E LIRRF ++ A + T Sbjct: 123 FIEFAGLLNDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNDTAGEHFT 182 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+V L TAL+ DD + + G+IRT+YDPT GTGGFL+ M ++ + + + Sbjct: 183 PRDIVRLTTALVFMEDDDVLTKD-GIIRTIYDPTAGTGGFLSSGMEYLHELNPNA----V 237 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + GQEL PE++A+C A MLI+ + I+ G+TLS D + +F Y LSNP Sbjct: 238 MRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLSVDQFDYMLSNP 290 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRA 356 PFG W+K + ++ EH+ G GRFG GLP++SDGS+LFLMHL +K+ G R Sbjct: 291 PFGVDWKKIEQDIKDEHEQKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSTESGSRI 350 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN+K Sbjct: 351 GIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSNKKDA 410 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSR-------ENGK----- 463 ER+GKVQLINA++L T +R G KR + + + I Y ++G+ Sbjct: 411 ERKGKVQLINASNLSTKMRKSLGSKRNYLTETEIATITQNYGDFVAVDTLAQDGETEQQK 470 Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--------------------- 500 S++ FGYRR+ + RPLR+S + + + L Sbjct: 471 PFASKIFASHEFGYRRVTIERPLRLSAQITDSAITALRFAPKPLNAVMQSIDAQLDTAFG 530 Query: 501 ----------------------DITWRKLSPLH------------QSFWLDILKPMMQQI 526 + +L Q ++ K + I Sbjct: 531 TAWTAETYGQLQDVALEVRALIKAEFPELKEKDIKEVLDSKIWLFQKALMEKAKALQDVI 590 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD---------- 576 + + + + K +K ++A K+P A+PV + Sbjct: 591 GTEQFDDFNQFDDVLKKALKQTDIKLDAKEKKQLLDAITWKNPEAEPVINKVLKQAENPL 650 Query: 577 --------VNGEWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDKIFID 622 E++ D +L + EN+ E I+DYF REV HVPDA+I+ D Sbjct: 651 YGQFSYQGKVVEFVQDADLRDAENIALNPKVSTTELIEDYFKREVQLHVPDAWINADKRD 710 Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 EKD EIG VGYEI FNR FY YQP R L +IDA+L V A+I LL+E+ Sbjct: 711 EKDSEIGIVGYEIPFNRHFYVYQPPRDLSEIDADLDAVSAEIMHLLQEV 759 >gi|283787022|ref|YP_003366887.1| Type I restriction-modification system, methylase (M) subunit [Citrobacter rodentium ICC168] gi|282950476|emb|CBG90139.1| putative Type I restriction-modification system, methylase (M) subunit [Citrobacter rodentium ICC168] Length = 786 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 289/798 (36%), Positives = 407/798 (51%), Gaps = 141/798 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC L T+ AV KY Sbjct: 1 MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 58 Query: 61 AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 S + ++ ++ +G SF+NTS+ L +G + + NLESY+ +FS +A+ IFE Sbjct: 59 ELKTSPLPEDAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFE 118 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F FS + LE A LL+K+ K F+ +L P + + M ++E LIRRF +E A + Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 178 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPRD+V L T+L+ DD + G+IRT+YDPT GTGGFL+ M +V + + Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSAGMEYVHELNPNA-- 235 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 ++ GQEL PE++A+C A MLI+ + I+ G+TLS D +F Y L Sbjct: 236 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 286 Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351 SNPPFG W+K + + EH + G GRFGPGLP++SDGS+LFLMHL +K+ N Sbjct: 287 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGT 346 Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GGR I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 406 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460 LSN+K ER+GKVQLI+ T+L +R G KR ++ +D + I + + Sbjct: 407 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFKVVDATTLE 466 Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 S++ + FGYRR+ + RPLR+S + Sbjct: 467 ELGLEKAAEQKSSRGRQPATAKTEATKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526 Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510 + L A++ +++ L Sbjct: 527 ITTLRFAPKPFNAPMERLYDEFAAQWQEETYGDFSELEAEARAIIKAEFAELKEKQIKDL 586 Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557 S + ++++ A + + KT VK Sbjct: 587 LDSKLWLAQRALLEKAQQIQAALGTQAGGKTLVSNDFNQFQMTLKGAIKTAGVKLDAKEN 646 Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL--- 596 FI+A K+P A+PV G E+ D L + ENVP Sbjct: 647 KQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAV 706 Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653 + I++YF EV PHV DA+I+ D KD E+G VGYEI FNR FY YQP R L++I Sbjct: 707 STSDLIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLEEI 766 Query: 654 DAELKGVEAQIATLLEEM 671 DA+L V A+I LL+E+ Sbjct: 767 DADLDAVSAEIMKLLQEV 784 >gi|114778242|ref|ZP_01453114.1| putative type I restriction-modification system, M subunit; N-6 Adenine-specific DNA methylase [Mariprofundus ferrooxydans PV-1] gi|114551489|gb|EAU54044.1| putative type I restriction-modification system, M subunit; N-6 Adenine-specific DNA methylase [Mariprofundus ferrooxydans PV-1] Length = 781 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 289/791 (36%), Positives = 397/791 (50%), Gaps = 135/791 (17%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + +LA +IW A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV ++ Sbjct: 1 MSETPNNLAAYIWSLADLLRGDFKQSQYGRIILPFTLLRRLECVLEVSKEAVLAEHARIQ 60 Query: 64 GSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 G + E+ +K AG SF+NTS+ LS LG + ++NLESYI FS +A+ IFE F Sbjct: 61 GMGLPEEAQEKFLLKAAGLSFFNTSKMDLSKLGESGIKDNLESYIQGFSRDAREIFEHFK 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F+ I +L A LLYKI + +L P + + M ++E LIRRF +E A + T Sbjct: 121 FTEFIGQLSDANLLYKIVQKVRLTDLSPAAISNHDMGKVFEELIRRFAESSNETAGEHFT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+VHL T+L+ DD PG+IRT+YDPT GTGGFL++ M +V + Sbjct: 181 PRDIVHLTTSLVFMEDDDALT-KPGIIRTIYDPTAGTGGFLSEGMEYVEKLNPQA----V 235 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + +GQEL PE++A+C A MLI+ + NI+ G+TLS D +F Y LSNP Sbjct: 236 MRAYGQELNPESYAICKADMLIKGQDV-------SNIKLGNTLSGDQLYADKFDYMLSNP 288 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG----- 353 PFG W+K + ++ EH G GRFGPGLP++SDGS+LFL+HL +KL G Sbjct: 289 PFGVDWKKIEKEIKDEHAIKGFDGRFGPGLPRVSDGSLLFLLHLISKLRPNEGDGHGRPS 348 Query: 354 -----------GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 GR I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T Sbjct: 349 VAGGTTPGATGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTG 408 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE- 460 IATY+W+LSN+K ER+GKVQLIN +L +R G KR ++DD I + + E Sbjct: 409 IATYVWVLSNKKAAERKGKVQLINGVNLCGKMRKSLGSKRNEMSDDDIATITRAFGAFEV 468 Query: 461 ----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 S++ FGYRRI + RPLR SF Sbjct: 469 IDARELNKPAEQKSNRGRQSENPKSETPKTFSSKIFASHEFGYRRITIERPLRESFRFSD 528 Query: 493 TGLARLE-----------------------------------------------ADITWR 505 + L + + Sbjct: 529 DRIETLRYAPGAPNAAMQWIYGEYGSEWGVEEYGDLTVHEEEIRNRIKSHFAALKEKQIK 588 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 L + + + + + K +K + +A Sbjct: 589 DLLDRKTWLAQRAIMQKAKALQQAIGTDQHDDMNTYDAMLKKSGIKLDATEKKQITSAVS 648 Query: 566 RKDPRADPVTDV----------------NG---EWIPDTNLTEYENVPY------LESIQ 600 K+P A V +G E+ PD++L + ENVP E+ + Sbjct: 649 WKNPEAAKVIKKVHKSAEPNAIYGLFEVDGEVVEYKPDSDLRDNENVPLDPSRPVNETNE 708 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 YF +EV P+V DA+ID D KD EIG VGYEI FNR FY YQP R L +IDA+L V Sbjct: 709 AYFAKEVQPYVLDAWIDACKRDAKDGEIGIVGYEIPFNRHFYIYQPPRDLAEIDADLDKV 768 Query: 661 EAQIATLLEEM 671 A+I LL+E+ Sbjct: 769 SAEIMQLLQEV 779 >gi|126462619|ref|YP_001043733.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029] gi|126104283|gb|ABN76961.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029] Length = 611 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 261/672 (38%), Positives = 364/672 (54%), Gaps = 67/672 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L+ F+W A+ L GD+K +D+GKVILPFT+LRR++C L PT+ AV +Y Sbjct: 2 NQQDLSAFLWSVADLLRGDYKQSDYGKVILPFTVLRRIDCVLAPTKEAVLAEYKIRKEQG 61 Query: 67 IDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + F++ +G +FYN S + L L N NL +YI FS + IF+ F+F + Sbjct: 62 MPPAPFLRKASGQTFYNASRFDLGKLMGDQDNIALNLRAYIQGFSPEVRDIFDHFEFDTQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I RL KAGLLY + + F+ LHPD V + M ++E LIRRF +E A + TPR+V Sbjct: 122 IDRLAKAGLLYLVTEKFAKAPLHPDRVTNHQMGLVFEELIRRFAELSNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L L+ DDA+ PG++RT+YDPT GTGG L+ A ++ D + Sbjct: 182 IRLMVNLIFVEDDAVLS-KPGVVRTIYDPTAGTGGMLSVAEEYLTDMNPAA----SVALS 236 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL PE++A+C A MLI+ + NI G+TLS D G+ F Y LSNPPFG Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------GNIAFGNTLSDDFHPGETFDYMLSNPPFGV 289 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + V EH+ G GRFGPGLP++SDGS+LFLMHL +K+ GG R IVL+ Sbjct: 290 EWKKVEKVVRAEHEQKGHAGRFGPGLPRVSDGSLLFLMHLLSKMRPAAQGGCRFGIVLNG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR +LE+DL+EAIVALPTD+F+ T IATY+WIL+NRK E R+GKV Sbjct: 350 SPLFTGGAGSGESEIRRHVLESDLVEAIVALPTDMFYNTGIATYVWILTNRKAEARKGKV 409 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLI+ + W +R G KR+ + D I ++ +R+ D + V Sbjct: 410 QLIDGSSFWQKMRKSLGSKRKQMGDADIATITRLFGGFIEADLARVFDAAGKEVGTVVV- 468 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + KL+PL + ++ +G+ V+ ++ Sbjct: 469 ---------TPGEAPPTPPEGGRVKLAPLSR----------IRPNESFGYRTITVERPLR 509 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601 + + + + K + G+ PD L + ENVP E + Sbjct: 510 DEQGRVVLGQKGK----------------------LKGKPQPDPALRDTENVPLTEDVAA 547 Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661 YF REV PH PDA I D E +VGYEI FNR FY ++P R L IDA+L V Sbjct: 548 YFAREVLPHAPDACI--------DPEKTKVGYEIPFNRHFYVFEPPRPLAQIDADLAEVT 599 Query: 662 AQIATLLEEMAT 673 +I +L ++ Sbjct: 600 TRIQAMLAGLSA 611 >gi|327396329|dbj|BAK13751.1| type I site-specific restriction-modificationsystem, M subunit and related helicases [defense mechanisms] hypothetical protein [Pantoea ananatis AJ13355] Length = 786 Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 290/798 (36%), Positives = 407/798 (51%), Gaps = 141/798 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC L T+ AV KY Sbjct: 1 MSDN--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 58 Query: 61 AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 S++ ++ ++ + SF+NTS L +G + + NLESYI +FS +A+ IFE Sbjct: 59 ELKASSLPEDAKEKFLLRASTLSFFNTSRMDLGKMGQNDIKANLESYIQAFSPDAREIFE 118 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F FS + LE A LL+K+ K F+ +L P + + M ++E LIRRF +E A + Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAESSNETAGE 178 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPRD+V L T+L+ DD + G+IRT+YDPT GTGGFL+ M +V + + Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 235 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 ++ GQEL PE++A+C A MLI+ + I+ G+TLS D +F Y L Sbjct: 236 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 286 Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351 SNPPFG W+K + + EH + G GRFGPGLP++SDGS+LFLMHL +K+ N Sbjct: 287 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDGT 346 Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GGR I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T I TY+WI Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGITTYVWI 406 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460 LSN+K ER+GKVQLI+ T+L +R G KR ++ +D + I + E Sbjct: 407 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFEVMDATTLE 466 Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 S++ + FGYRR+ + RPLR+S + Sbjct: 467 ELGLEKAAEQKSSRGRQPVTARTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526 Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510 +A L A++ +++ L Sbjct: 527 IATLRFAPKPFNAPMERLYEEFAAQWQADNHGDFSELEAEARAIIKAEFAELKEKQIKDL 586 Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557 + + +M++ A + + KT VK Sbjct: 587 LDRKLWLVHRGLMEKAQQIQTALGTQAGGKTLVSNDFNQFQMTLKGAIKTAGVKLDAKEN 646 Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL--- 596 FI+A K+P A+PV G E+ D L + ENVP Sbjct: 647 KQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAV 706 Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653 + I+DYF EV PHV DA+I+ D KD E+G VGYEI FNR FY YQP R L++I Sbjct: 707 STSDLIEDYFKAEVLPHVNDAWINADKRDAKDNEVGIVGYEIPFNRHFYVYQPPRPLEEI 766 Query: 654 DAELKGVEAQIATLLEEM 671 DA+L V A+I LL+E+ Sbjct: 767 DADLDAVSAEIMKLLQEV 784 >gi|78046747|ref|YP_362922.1| type I site-specific deoxyribonuclease (modification subunit) [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035177|emb|CAJ22822.1| type I site-specific deoxyribonuclease (modification subunit) [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 728 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 253/748 (33%), Positives = 376/748 (50%), Gaps = 99/748 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L IW+ A L G ++ + V+LP +LRRL+C LEPT+ AV +++ Sbjct: 2 NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKDAVLKQHEKLL 61 Query: 64 GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113 + + ++ G + YN S Y+ L + N NL +YI FS A+ Sbjct: 62 AKDTPKPAMHRLLGKAADPNRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IFE F F I +L+ + L+ I K + I+LHPD + + M ++EHL+ RF + +E Sbjct: 122 IFERFKFGDQIDKLDASNRLFTIIKAMASIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A D TPR+V+ L L+ + ++ PG++R++YDPTCGTGG L+++ + + Sbjct: 182 AGDHFTPREVIRLMANLVYTGEQEVY--RPGIVRSIYDPTCGTGGMLSESEKFILGQNAA 239 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTG 289 L HGQE E+ A+C + MLI+ + + NI +G TL +KD F G Sbjct: 240 A----HLHLHGQEYNDESWAICCSDMLIKDED-------TANIVKGDTLGDGKTKDGFEG 288 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +RFHY L+NPPFG +W+ K VE EH K G GRFG GLP I+DGS+LFL H+ K+ Sbjct: 289 ERFHYMLANPPFGVEWKDQKTVVENEHAKLGFAGRFGAGLPAINDGSLLFLQHMIAKMHP 348 Query: 349 PPNG-----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 G G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP LF+ T I Sbjct: 349 YDEGHPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGI 408 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG 462 TY+W+++NRK EER+G VQLI+ T + ++ KR I+D+Q + +Y + +G Sbjct: 409 YTYVWLVTNRKPEERQGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDG 468 Query: 463 K-----------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + SR+ + R G+ ++ V RPLRM+F +ARL+A + Sbjct: 469 ESAEVVIDHKTGETENRVVSRVFENRELGFLKVTVERPLRMNFEATPGRVARLDAQSAFA 528 Query: 506 KLSPLHQSFWLDILKPMMQQ---------------IYPYGWAESFVKESIKSNEAKTLKV 550 L+ + + + + + + V E+ AK + Sbjct: 529 NLATSKKRKDEKAARQEIAEGQAMQQCIRELLVRLAGKGLYMDREVFEADLEKVAKKAGI 588 Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------ 598 K A A G +DP A+ D G PD+ L + EN+P E Sbjct: 589 KLPAPIRKAIFAALGERDPHAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPD 648 Query: 599 -------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645 I DY REV PHV DA++ D +VGYEI NR FY YQ Sbjct: 649 KPNDALVEAFRDTIDDYMRREVLPHVADAWV--------DYSKTKVGYEIPINRHFYVYQ 700 Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673 P R L I+A+++ +E +IA LL+ + Sbjct: 701 PPRPLPQIEADIRQLEGEIADLLKGLLA 728 >gi|188992675|ref|YP_001904685.1| Type I site-specific deoxyribonuclease (modification subunit) [Xanthomonas campestris pv. campestris str. B100] gi|167734435|emb|CAP52645.1| Type I site-specific deoxyribonuclease (modification subunit) [Xanthomonas campestris pv. campestris] Length = 728 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 253/748 (33%), Positives = 385/748 (51%), Gaps = 99/748 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L IW+ A L G ++ + V+LP +LRRL+C LEPT+ AV +++ Sbjct: 2 NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLL 61 Query: 64 GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113 + ++ ++ G + YN S Y+ L + N NL +YI FS A+ Sbjct: 62 AKDTPEQAMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IFE F FS I +L+ + L+ I K + I+LHPD + + M ++EHL+ RF + +E Sbjct: 122 IFERFKFSDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A D TPR+V+ L L+ + ++K PG++R++YDPTCGTGG L+++ + + Sbjct: 182 AGDHFTPREVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNAA 239 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTG 289 L +GQE E+ A+C + MLI+ + + NI +G TL +KD F G Sbjct: 240 A----HLHLYGQEYNDESWAICCSDMLIKDED-------TANIVKGDTLGDGKTKDGFEG 288 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +RFHY L+NPPFG +W+ K VE EH N G GRFG GLP I+DGS+LFL H+ K+ Sbjct: 289 ERFHYMLANPPFGVEWKDQKTVVENEHANHGFTGRFGAGLPAINDGSLLFLQHMIAKMHP 348 Query: 349 -----PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 P G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP LF+ T I Sbjct: 349 YDGGNPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGI 408 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG 462 TY+W+++NRK EERRG VQLI+ T + ++ KR I+D+Q + +Y + +G Sbjct: 409 YTYVWLVTNRKPEERRGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDG 468 Query: 463 K-----------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + SR+ + R FG+ ++ V RPLRM+F +ARL+ + Sbjct: 469 ESADVVIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPERIARLDEQSAFA 528 Query: 506 KLSPLHQ--------------SFWLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKV 550 L+ + ++ ++ ++ G + + + E+ A + + Sbjct: 529 NLATSKKRKDEKVAQQEIAEGQAIQRSIRELLAELAVKGLYGDRELFEADLEKAANKVGI 588 Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------ 598 K A +A G +DP+A+ D G PD+ L + EN+P E Sbjct: 589 KLPAPIRKAIFSALGERDPQAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPD 648 Query: 599 -------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645 I DY REV PHV DA++ D +VGYEI NR FY Y+ Sbjct: 649 KPNDDLIEAFRDTIDDYMRREVLPHVADAWV--------DYSKTKVGYEIPINRHFYVYK 700 Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673 P R L I+A+++ +E +IA LL+ + Sbjct: 701 PPRPLPQIEADIRQLEGEIADLLKGLLA 728 >gi|169634729|ref|YP_001708465.1| putative type I restriction-modification system DNA methylase (HsdM) [Acinetobacter baumannii SDF] gi|169153521|emb|CAP02683.1| putative type I restriction-modification system DNA methylase (HsdM) [Acinetobacter baumannii] Length = 671 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 367/670 (54%), Positives = 470/670 (70%), Gaps = 11/670 (1%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + ++LA+FIW NA DLWGDF HT+FGK+ILPFT+LRRLEC LEPT+ AV Y F Sbjct: 10 NNTESTLASFIWNNANDLWGDFPHTEFGKIILPFTVLRRLECVLEPTKDAVLNTYEQFKD 69 Query: 65 SNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + L+ + V+G FYN S Y+LS LG T T+ N E YIA+ S+N + IFE FDF++T Sbjct: 70 QGMALDDILTNVSGNPFYNKSTYNLSNLGGTKTKANFEDYIANSSENVRVIFEQFDFNTT 129 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I +L KA LL +IC NF+ I+LHP+ VPDR MSN+YEHLI +FG+EV G+EDFMTPRD+ Sbjct: 130 INKLAKANLLLRICNNFAAIDLHPNVVPDRTMSNVYEHLIAKFGAEVGTGSEDFMTPRDI 189 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 VHLA LLL+PD+ LF++ G+IRT+YD TCGT GFLTD MN+V +K+ P+LVPH Sbjct: 190 VHLAATLLLEPDNELFEQKNGLIRTIYDQTCGTSGFLTDMMNYVDGFKDRYKVAPVLVPH 249 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL+PETHAV + ML+++LESDP RDLS+NI+ GSTLS DLF G+RFHY SNPPFG Sbjct: 250 GQELQPETHAVALGSMLLKKLESDPSRDLSQNIKLGSTLSNDLFAGQRFHYQCSNPPFGM 309 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 W KD +AV+ EHK G GRFG GLPK SDGSMLFL +L +KLELP NGGGR AIVLS Sbjct: 310 SWAKDANAVQLEHKEKGLNGRFGAGLPKASDGSMLFLQNLISKLELPENGGGRGAIVLSG 369 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLFNG AGSGESEIRR++LEND +EAIVALPTD+FFRT I TY+W++SNRK E+R+GKV Sbjct: 370 SPLFNGGAGSGESEIRRFILENDYLEAIVALPTDIFFRTGIGTYIWLISNRKPEQRKGKV 429 Query: 423 QLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLI+AT + +S+R NEG KR+ I+ + +I IY E S++ DY FGYRR+KVL Sbjct: 430 QLIDATGMGSSMRKNEGNKRKFIDQNSIDEISRIYADFEESSVSKIFDYTDFGYRRVKVL 489 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 RPLR+ D L +A + KLS Q+ ++ Y W E+ +++ Sbjct: 490 RPLRIDLQFDAEKLESFKASKEFGKLSDSDQNTVSAYIEQQFGDSKDYAWFENTFLKNLP 549 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601 K SK A I AFG ++P A+ V ++NGE D+ LT+YEN+P + I Sbjct: 550 -------LSKVSKGLKNALIAAFGVQNPDAEAV-EINGEVQMDSELTDYENIPLNQDIAA 601 Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661 Y +EV PH PDA ID + D KD ++G VGYEINFNR+FY ++ R +I AE+K + Sbjct: 602 YMAKEVLPHAPDAVIDTSYTDSKDGQVGVVGYEINFNRYFYVFEQPRHPNEIMAEIKALS 661 Query: 662 AQIATLLEEM 671 A++A LL E+ Sbjct: 662 AEVAQLLGEI 671 >gi|206975574|ref|ZP_03236486.1| N-6 DNA methylase [Bacillus cereus H3081.97] gi|206746036|gb|EDZ57431.1| N-6 DNA methylase [Bacillus cereus H3081.97] Length = 669 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 250/689 (36%), Positives = 368/689 (53%), Gaps = 44/689 (6%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +FIW AE L G +K D+GKVILP +LRR +C L+ T+ V + F N Sbjct: 3 NFQDKVSFIWSIAEVLRGPYKPEDYGKVILPLAVLRRFDCVLDSTKDEVLSNFEKFKAMN 62 Query: 67 ID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 D ++A +F+N S Y+ + L + N +NL YI FS A+ I + FDF Sbjct: 63 EDAREPILNRIAKQNFHNASNYNFTKLLSDADNIADNLRDYINGFSKIARDIMDHFDFDR 122 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I +L+ LLY K FS ++LHP+ V + M I+E LIRRF A D TPR+ Sbjct: 123 QIEKLDNNDLLYLTIKRFSELDLHPEIVSNVEMGYIFEELIRRFSEHA--EAGDHYTPRE 180 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV L +LL DD + PG+ +TLYD GTGG + A ++ + S + Sbjct: 181 VVRLMVSLLFMHDDDMLT-KPGLTQTLYDCAAGTGGMGSVAQEYLKELNSTADLE----F 235 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 QE+ E++A+C A +LI+ + +KNI+ G+TLS D F G++F Y +SNPP+G Sbjct: 236 FAQEINDESYAICKADILIKGAD-------AKNIRLGNTLSNDQFKGEQFDYLISNPPYG 288 Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358 W+ + ++ EH+ G GRFGPG P+ SDG +LFL+HL +K++ G R AI Sbjct: 289 VDWKSYEKPIKAEHEEQGYNGRFGPGTPRTSDGQLLFLLHLISKMKPVTAENPQGSRLAI 348 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +++ SPLF G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K R Sbjct: 349 IMNGSPLFTGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIR 408 Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GKVQLINA D ++ R I +Q +I +Y + ++ ++ D FGY + Sbjct: 409 KGKVQLINAVDFSKKMKKSMGSKRNEIAQEQIDEIARLYGDFKEREYVKIFDNEDFGYHK 468 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQI------ 526 I V RPLR++F++ + + R+ ++ L+ + +++ K M +I Sbjct: 469 ITVERPLRLNFVISEERIQRVAEQKAFQNLTVSKKKGDNGLAEIEVGKAMQAKIMEVLRS 528 Query: 527 --YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 + + + K + + A + KD A + PD Sbjct: 529 LESEQLFKNRDEFTKLLKDAFKKEDITIGAPVLKAILAGLSEKDETAHICMKNKTDAEPD 588 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 T+L + ENVP E I +YF REV PHV DA+I D+ +VGYEI F R FY+Y Sbjct: 589 TDLRDTENVPLKEEIYEYFKREVIPHVLDAWI--------DESKTKVGYEIPFTRQFYKY 640 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 R +I E+K +EA I L+++ Sbjct: 641 TALRSSAEIMEEIKELEASILEKLKKVMG 669 >gi|148653130|ref|YP_001280223.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1] gi|148572214|gb|ABQ94273.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1] Length = 806 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 277/805 (34%), Positives = 399/805 (49%), Gaps = 151/805 (18%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ +LA FIW A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+ Sbjct: 12 QTSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQKISAM 71 Query: 66 NIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 ++ E+ K G +FYNTS +L+ +G ++ NL YI SFS +A+ IF F F Sbjct: 72 GLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFAHFKF 131 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +L A LLYK+ + F ++L P+ V + M ++E LIRRF +E A + TP Sbjct: 132 EEFVGQLNDANLLYKVVQKFQNVDLSPEAVSNYEMGLVFEELIRRFAESSNETAGEHFTP 191 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 RD+V L T+L+ DD G+IRT+YDPT GTGGFL+ M +V + + ++ Sbjct: 192 RDIVRLTTSLVFMEDDDAL-IKDGIIRTIYDPTAGTGGFLSSGMEYVLELNPNA----VM 246 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 GQEL PE++A+C A MLI+ E I+ G+TLS D +F Y LSNPP Sbjct: 247 RAFGQELNPESYAICKADMLIKGQEV-------SRIKLGNTLSDDQLPADKFDYMLSNPP 299 Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPN-------- 351 FG W+K ++ EH+ G GRFGPG P++SDGS+LFL+HL +K+ + Sbjct: 300 FGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPVASPKRDSLEL 359 Query: 352 ------------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 G R I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+F+ Sbjct: 360 SNRSSEQQDTSVTGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPTDMFY 419 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVS 458 T IATY+WIL+N K ER+GKVQLI+ T+L++ +R G KR ++++ + I + Sbjct: 420 NTGIATYVWILTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITRTFGD 479 Query: 459 RE-----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 E S++ D FGYRR+ + RPLR+S Sbjct: 480 FEVVDARALDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLRLSAQ 539 Query: 490 LDKTGLARLE-------------------------------------------------- 499 + + L Sbjct: 540 MSDEAIESLRYAERTYDSVMPALYEKFGEQWTEETYGDFGDQTSDIQVEARAMIKADFSE 599 Query: 500 -ADITWRKLSPLH----QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 + +++ Q ++ K + +I + + + + K + + Sbjct: 600 LKEKQIKEVLDSKLWREQLAIMNAAKVLQDEIGTEQFDDYNQFDEVFKQAIKDTGLDLTA 659 Query: 555 SFIVAFINAFGRKDPRAD-----------------PVTDVNG-----EWIPDTNLTEYEN 592 +N K+P A+ V D G E+ D++L +YEN Sbjct: 660 KDKKQILNTITWKNPDAERVVKKSAKEANPLYGAFEVADSKGKAKIVEFETDSDLRDYEN 719 Query: 593 VPYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 +P E I+ YF REV PHV DA+ID D D+EIG VGYEI FNR FY Y+P Sbjct: 720 IPLDPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGVVGYEIPFNRHFYVYEP 779 Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671 R L +IDA+L V I LL E+ Sbjct: 780 PRPLSEIDADLDKVSQDIMQLLSEV 804 >gi|167917952|ref|ZP_02505043.1| putative type I restriction-modification methylase [Burkholderia pseudomallei BCC215] Length = 613 Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 267/672 (39%), Positives = 377/672 (56%), Gaps = 67/672 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +L++FIW A+ L GD+K +++G+VILPFT+LRRL+C LEPT++AV ++ A + Sbjct: 2 NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEPTKAAVLAEFEAKTKAG 61 Query: 67 IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++ E F+ KV FYNTS L L + R NL Y+ FS +A+ IFE FDF + Sbjct: 62 LNSEPFLLRKVGDAKFYNTSPLDLVKLLGDQDHIRQNLYDYLRGFSPSARDIFERFDFHT 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I RL KA LLY + + F I+LHP TV + M ++E LIR+F +E A + TPR+ Sbjct: 122 QIERLAKANLLYLVTEKFVNIDLHPSTVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L LL DD + ++RT+YDPT GTGG L+ A ++ + ++ Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEYLLEHNPAARL----TM 237 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQEL E++A+C A MLI+ + NI G+TLS D G++F Y LSNPPFG Sbjct: 238 FGQELNDESYAICKADMLIKGQDV-------ANIVAGNTLSDDGHAGRKFDYMLSNPPFG 290 Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 +W+K + AV +EH+ G GRFGPGLP++SDGSMLFL+HL +K+ +GG R IVL+ Sbjct: 291 VEWKKVEKAVRQEHEQKGFSGRFGPGLPRVSDGSMLFLLHLVSKMRPAHDGGSRFGIVLN 350 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K + R+G Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPQHRKGY 410 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 VQLI+A+ W +R G KR+ ++D+ I ++ + + + D R V Sbjct: 411 VQLIDASSFWQKMRKSLGSKRKELSDEHIDTITRLFGDFIEAELATVFDAEGKEVSRWVV 470 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 G KL+P+ + F + +G+ V+ + Sbjct: 471 P----------AGGNPPEAPFGGKAKLAPISRVF----------KNEDFGYTTITVERPL 510 Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 + + + + K G+ D+ L + ENVP E I Sbjct: 511 RDEQGQVVLGAKGKQ----------------------KGKPQADSALRDTENVPLSEDIG 548 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 YF +EV PH PDA+I D+E +VGYEI FNR FY ++P R L ID ELK V Sbjct: 549 AYFDQEVLPHAPDAWI--------DEEKSKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600 Query: 661 EAQIATLLEEMA 672 A I +LEE+A Sbjct: 601 SANIMKMLEELA 612 >gi|256825200|ref|YP_003149160.1| type I restriction-modification system methyltransferase subunit [Kytococcus sedentarius DSM 20547] gi|256688593|gb|ACV06395.1| type I restriction-modification system methyltransferase subunit [Kytococcus sedentarius DSM 20547] Length = 663 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 248/668 (37%), Positives = 367/668 (54%), Gaps = 30/668 (4%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI--DLE 70 NFIW A+ L G ++ ++G VILPFT+L R E LEPT+ AV + + E Sbjct: 19 NFIWGIADMLRGPYRPKEYGTVILPFTVLARFESVLEPTKDAVLAASEKYESAPDLVRHE 78 Query: 71 SFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 + +G FYN S+++LSTL N NL++ I +++ + +FE FD I L+ Sbjct: 79 MLKRASGQEFYNISQFTLSTLGDPANQAANLQNLIEGYNEEVRQVFERFDMPKIIRDLDD 138 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 L + K F+ +++HPD V + M +++E LIRRF + A D+ TPR+VV L + Sbjct: 139 RDRLSAVVKEFAALDVHPDRVSNAEMGDVFEELIRRFMEASKDVAGDYFTPREVVRLMVS 198 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 LL PD P +IR +YDPTCGTGG L++A + + H + GQE Sbjct: 199 LLFSPDTEDLS-DPHLIRQVYDPTCGTGGMLSEAHEWMREHNGHATLN----LFGQEFNA 253 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 ++A+ A ++I+ + ++NI G TL D GK F YC+SNPPFG+ W+ + Sbjct: 254 LSYAMAKADLIIK-------KQDAQNIFFGDTLLVDGHEGKTFSYCISNPPFGQDWKVQE 306 Query: 310 DAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 AV+ E + +G+ GRF GLP ++DG+MLFL HL +K+ GGGR AIVL+ S LF G Sbjct: 307 KAVKAERERDGDEGRFAAGLPSVNDGAMLFLQHLVSKMRPAAQGGGRGAIVLNGSALFTG 366 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 AG G SEIRR LLENDL++AI+ LPTDLF+ T IATY+W+L N K +ERRGKVQLI+ T Sbjct: 367 SAGQGPSEIRRHLLENDLVDAIIGLPTDLFYNTGIATYIWVLDNNKPQERRGKVQLIDGT 426 Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLR 485 W +R G KRR++++ I+D+Y E + + S++ + FGYR I V +PLR Sbjct: 427 AQWVKMRKSIGAKRRMLSEANITSIVDLYGEYEDADPEVSKVFNTEDFGYRTITVEQPLR 486 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + +D+ + +KL + + L + + W E + Sbjct: 487 QVYSVDEDRIEAALNLTPIKKLDKETRHLLREALDSLD---HEQVWTERGEFDKDLGTAL 543 Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605 +V + + A I AF P+ + V G PD +L + ENVP E + Y R Sbjct: 544 GAHRVGLTPANRRAVIGAFAESSPQGEIVKGPKGRIEPDASLRDTENVPLTEDVDAYVER 603 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV P P+A++ D+ ++GYEI F R FY Y+P R L +IDA+++ A++ Sbjct: 604 EVLPWAPEAWV--------DESKTKIGYEIPFTRAFYVYEPPRPLAEIDADVQAAIARVQ 655 Query: 666 TLLEEMAT 673 L E+ + Sbjct: 656 GLFAEVRS 663 >gi|260552462|ref|ZP_05825838.1| N-6 DNA methylase [Acinetobacter sp. RUH2624] gi|260405269|gb|EEW98765.1| N-6 DNA methylase [Acinetobacter sp. RUH2624] Length = 759 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 284/771 (36%), Positives = 402/771 (52%), Gaps = 114/771 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + +A FIW A+ L GDFK +G+VILPFTLLRRLEC E ++++V E Sbjct: 1 MTNT--NFSQVAAFIWSVADLLRGDFKQFQYGRVILPFTLLRRLECVFESSKASVLEANE 58 Query: 61 AFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 + E+ G SF+NTSE LS+LG N R NL +YI FS +A+ IF Sbjct: 59 KVKAMPLPEEAKEKILLKATDGLSFFNTSELDLSSLGQKNIRANLGNYIQHFSKDAREIF 118 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E F F L+ A LLYK+ + F+ +L P+ + + M ++E LIRRF +E A Sbjct: 119 EHFKFDEFTGLLDDANLLYKVIQKFASTDLSPENISNHDMGLVFEELIRRFAESSNETAG 178 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPRD+V L T L+ DD G+IRT+YDPT GTGGFL+ +V + Sbjct: 179 EHFTPRDIVRLTTGLIFSQDDDAL-NKEGVIRTIYDPTAGTGGFLSSGTEYVYEHNPEA- 236 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ GQEL PE++A+C A MLI+ + NI+ G+TLS D ++F Y Sbjct: 237 ---VMRVFGQELNPESYAICKADMLIKGQDVR-------NIKLGNTLSNDQLAYEKFDYM 286 Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNG 352 LSNPPFG W+K +D ++ EH + G GRFG GLP++SDGS+LFLMHL +K+ Sbjct: 287 LSNPPFGVDWKKIEDEIKDEHQQKGFNGRFGAGLPRVSDGSLLFLMHLISKMRDVDSTGQ 346 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+F+ T IATY+W+LSN Sbjct: 347 GSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPTDMFYNTGIATYVWVLSN 406 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------NGK- 463 +K ER+GKV LINA++L + +R G KR + + + R I Y + E +G+ Sbjct: 407 KKDAERKGKVHLINASNLSSKMRKSLGSKRNYLTESEIRTITQNYGAFEAVDTLTLDGES 466 Query: 464 ------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----------------- 500 S++ + FGYRR+ + RPLR+S L +A L Sbjct: 467 EQQKPFSSKIFNSYEFGYRRVTIERPLRLSAQLSDDRIATLRFAPKPFNAVMQKVYESYG 526 Query: 501 -----------------------DITWRKLSP------------LHQSFWLDILKPMMQQ 525 + +L L Q + + + + Sbjct: 527 KDWTETSYGQLSDDAQVEIRALIKAEFSELKEKDIKTVLEPKLWLEQRALMRKAQSLQTK 586 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV--NG---- 579 I + + + + + K +K F++A K+P A+P + G Sbjct: 587 IGTAQFDDFNIFDELLKQALKDSSIKLEGKEKKQFLDAVTWKNPEAEPCINKVIKGKENP 646 Query: 580 ------------EWIPDTNLTEYENVPYL-------ESIQDYFVREVSPHVPDAYIDKIF 620 E++ D +L + EN+ + I+ YF REV HVPDA+I+ Sbjct: 647 LYGQFSYKAKVVEFVQDGDLRDAENIALDHPSQSTIDLIESYFKREVQLHVPDAWINADK 706 Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 D +D EIG VGYEI FNR FY YQP R L +IDA+L V +I LL+E+ Sbjct: 707 RDAQDGEIGIVGYEIPFNRHFYVYQPPRDLAEIDADLDAVSREIMALLQEV 757 >gi|228964021|ref|ZP_04125151.1| Type I restriction-modification system methyltransferase subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228795673|gb|EEM43150.1| Type I restriction-modification system methyltransferase subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 669 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 247/689 (35%), Positives = 369/689 (53%), Gaps = 44/689 (6%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +FIW AE L G +K D+GKV+LP +LRR +C LE T+ V + F N Sbjct: 3 NFQDKVSFIWSIAEVLRGPYKPEDYGKVVLPLAVLRRFDCVLENTKDEVLANFEKFKAMN 62 Query: 67 ID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 D ++A +F+NTS Y+ + L S N +NL YI FS A+ I + FDF Sbjct: 63 EDAREPILNRIAKQNFHNTSNYTFAKLLSDSDNIADNLRDYINGFSKTARDIMDHFDFDR 122 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I +L+ LLY K FS ++LHP+ V + M I+E LIRRF A D TPR+ Sbjct: 123 QIEKLDNNDLLYLTIKRFSELDLHPEVVSNVEMGYIFEELIRRFSEHA--EAGDHYTPRE 180 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV L +LL DD + G+ +TLYD GTGG + A ++ + + Sbjct: 181 VVRLMVSLLFMQDDDILT-KHGLTQTLYDCAAGTGGMGSVAQEYLTELNKTADLE----F 235 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 QE+ E++A+C A +LI+ + +KN++ G+TLS D F G +F Y +SNPP+G Sbjct: 236 FAQEINGESYAICKADILIKGAD-------AKNVRLGNTLSNDQFKGDKFDYLISNPPYG 288 Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358 W+ + ++ EH+ G GRFGPG P+ SDG +LFLMHL +K++ G R AI Sbjct: 289 VDWKSYEKPIKAEHEEQGYAGRFGPGTPRTSDGQLLFLMHLISKMKPVTAENPQGSRLAI 348 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +++ SPLF+G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K R Sbjct: 349 IMNGSPLFSGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIR 408 Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GKVQL+NA D ++ R I+ +Q +I+ +Y + + ++ D FGY++ Sbjct: 409 KGKVQLVNAVDFSKKMKKSMGSKRNEISQEQIDEIVRLYGNFTESEHVKIFDNEEFGYQK 468 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQI------ 526 I V RPLR++F++ + + + + L+ + ++ K + ++I Sbjct: 469 ITVERPLRLNFLISEERIQCVAEQKAFENLAKSKKKGDNGLAEIEAGKELQEKIIAVLRG 528 Query: 527 --YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 + + +E K V + A + KD AD + P+ Sbjct: 529 LESEELFKNREEFTKLLKDEFKKKDVAIGAPVLKAILAGLSEKDETADTCMKNKTDAEPN 588 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 T+L + E+VP E + +YF REV PHV DA+I D+ ++GYEI F R FY+Y Sbjct: 589 TDLRDTESVPLKEDMYEYFEREVKPHVSDAWI--------DESKTKIGYEIPFTRQFYKY 640 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 R +I AE+K +E I L+E+ Sbjct: 641 TKLRSSDEIMAEIKELEESILEKLKEVIG 669 >gi|126666658|ref|ZP_01737636.1| type I restriction-modification system, M subunit, putative [Marinobacter sp. ELB17] gi|126629046|gb|EAZ99665.1| type I restriction-modification system, M subunit, putative [Marinobacter sp. ELB17] Length = 728 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 247/743 (33%), Positives = 373/743 (50%), Gaps = 99/743 (13%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +IW A L G ++ + V+LP +LRRL+C LEPT+ V ++Y + Sbjct: 6 HDQLKGYIWDIANRLRGPYRPPQYRLVMLPIIVLRRLDCVLEPTKDKVLKEYEKLSAQGM 65 Query: 68 DLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 + ++ G + YNTS ++ L N NL +YI FS A+AIFE Sbjct: 66 PENAMERILGKAADPSRTHPLYNTSPFTFQRLLGDPENIAPNLVAYINGFSSTARAIFER 125 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F F I +L+ + L+ I K + ++LHPD + + M ++EHL+ RF + +E A D Sbjct: 126 FKFIDQIEKLDVSNRLFTIIKAMAEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDH 185 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L L+ + ++ PG+ RT+YDPTCGTGG L+++ + D + + Sbjct: 186 FTPREVIRLMANLVYTGEKDVYT--PGIYRTIYDPTCGTGGMLSESEKFILDQNAQANL- 242 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRFH 293 GQE E+ A+C + MLI+ + + +I G TL D F GK+FH Sbjct: 243 ---ALFGQEYNDESWAICCSDMLIKDED-------TSSIVLGDTLGDGKTRDGFEGKQFH 292 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 Y L+NPPFG +W++ K VEKEHK G GRFG GLP I+DGS++FL H+ +K+ +G Sbjct: 293 YLLANPPFGVEWKEQKHVVEKEHKEMGFAGRFGAGLPAINDGSLMFLQHMMSKMHPYKDG 352 Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP LF+ T I TY+ Sbjct: 353 DEDSAGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYV 412 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK--- 463 W+++NRK ERRGKVQLI+ T ++ KR I ++Q + +Y + ++G+ Sbjct: 413 WLVTNRKATERRGKVQLIDGTRFSQRMKKSLNNKRNEITEEQIHDLTRLYGNYQDGEVAD 472 Query: 464 --------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 S + + R FG+ ++ V RPLRM+F+ +ARL+ + L+ Sbjct: 473 VIMNHKTGERETRVVSHIFENREFGFLKVTVERPLRMNFMATPERIARLDDQAAFASLAT 532 Query: 510 LHQSFWLDILKPMMQQ---------------IYPYGWAESFVKESIKSNEAKTLKVKASK 554 + + +++ + +S + A+ +K Sbjct: 533 SKKRKHEAVAAQEIEEGRQIQASIRTLLSTLASNGQSKDRAAFDSHMNVAAQKTGLKLPA 592 Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY------------------- 595 A NA G +DP A+ D G+ PD+ L + EN+ Sbjct: 593 PIKKAIFNALGERDPNAEICLDGKGQPEPDSELRDTENISLPAGTQLPLPMQFGSDKPND 652 Query: 596 ------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 I Y REV PHVPDA++ D +VGYEI NR FY Y+P R Sbjct: 653 ELMETFRADIDAYMAREVLPHVPDAWV--------DYSKTKVGYEIPINRHFYVYKPPRP 704 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L I+ E+ +E +IA LL+ + Sbjct: 705 LDKIETEITTLEGEIAELLKGLV 727 >gi|25026604|ref|NP_736658.1| putative restriction enzyme subunit S [Corynebacterium efficiens YS-314] gi|259508263|ref|ZP_05751163.1| type I restriction-modification system methyltransferase subunit [Corynebacterium efficiens YS-314] gi|23491883|dbj|BAC16858.1| putative restriction enzyme subunit S [Corynebacterium efficiens YS-314] gi|259164151|gb|EEW48705.1| type I restriction-modification system methyltransferase subunit [Corynebacterium efficiens YS-314] Length = 663 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 256/672 (38%), Positives = 367/672 (54%), Gaps = 32/672 (4%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 A+FIW A+ L G +K +G +ILPFT+L RL+ L PT+ AV Sbjct: 14 ASFIWSAADLLRGTYKQHQYGNIILPFTVLARLDGVLAPTKQAVLTAIEGLDPDQAPSAG 73 Query: 72 FVKV---AGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 ++ YSFYN S + L +L N NL Y+ +FS N + IF+ + F TI Sbjct: 74 MLRNRAGHDYSFYNRSRHDLRSLQGDVDNLEENLRDYVNAFSPNVRDIFDQYKFDETIID 133 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L LL +I ++F+ +L P+ V + VM +I+E LIR+F +E A + TPR+V+ L Sbjct: 134 LANNDLLLEILQHFAKADLRPEVVSNEVMGHIFEELIRKFAEASNETAGEHFTPREVIDL 193 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +LLD D+ L PG+IR++YDPT GTGG L+ A N + ++ GQE Sbjct: 194 MVTILLDGDEELST--PGVIRSVYDPTAGTGGMLSAADNKIKAFNHQAQVN----LLGQE 247 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + PE++A+C A M+++ NI G+TL+ F + FHY LSNPPFG W+ Sbjct: 248 INPESYAICKADMVVKG-------QPITNIALGNTLTNPAFEDQTFHYALSNPPFGVAWK 300 Query: 307 KDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSS 362 KD+ AVE+EH+ G GRFGPGLP++SDGS+LFLMHL +KL P GG R AIVL+ Sbjct: 301 KDRPAVEREHEIAGHAGRFGPGLPRVSDGSLLFLMHLISKLREPGLQGGAAGRGAIVLNG 360 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGES IR+W+L+ND +EAI+ LPTD+F+ T I+TY+WIL+ K R+GKV Sbjct: 361 SPLFTGGAGSGESNIRKWVLDNDYLEAIIGLPTDMFYNTGISTYIWILNKDKDHARKGKV 420 Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLI+AT+++ +R G KR++++DD I +Y + + S++ + F YR I V Sbjct: 421 QLIDATEMFVKMRKSIGSKRKMLSDDNITTIATLYGNFVESEHSKIFNTTDFYYRTITVE 480 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 RPL++++ + R A KL Q L + + Sbjct: 481 RPLKLNYAFTPQRIERALAAKPVAKLEGWEQEALDKALGEAEEATHGVVSTNRAQFTKDL 540 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601 + + + A + G D + VT G+ D +L + ENVP+ + I D Sbjct: 541 KKILADEGLVLKPAVLKAVLTELGEHDDHGELVTKA-GKPEADASLRDTENVPWDQDIHD 599 Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661 Y REV P VPDA+I D+ + G EI F R FY+Y P R L+DID +L V Sbjct: 600 YLKREVHPFVPDAWI--------DETKTKEGVEIPFTRHFYKYVPPRPLKDIDRDLDEVL 651 Query: 662 AQIATLLEEMAT 673 +I LE++ Sbjct: 652 GRIRVRLEQVKA 663 >gi|238918473|ref|YP_002931987.1| hypothetical protein NT01EI_0518 [Edwardsiella ictaluri 93-146] gi|238868041|gb|ACR67752.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 786 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 287/798 (35%), Positives = 406/798 (50%), Gaps = 141/798 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC L ++ AV KY Sbjct: 1 MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAESKDAVVAKYD 58 Query: 61 AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 S + E+ ++ +G +F+NTS+ L +G + + NLE+Y+ +FS +A+ IFE Sbjct: 59 ELKTSPLPEEAKQKFLLRASGLAFFNTSKMDLGKMGQNDIKANLENYVQAFSPDAREIFE 118 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F FS + LE A LL+K+ K F+ +L P + + M ++E LIRRF +E A + Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 178 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPRD+V L T+L+ DD + G+IRT+YDPT GTGGFL+ M +V + + Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 235 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 ++ GQEL PE++A+C A MLI+ + I+ G+TLS D +F Y L Sbjct: 236 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 286 Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351 SNPPFG W+K + + EH + G GRFGPGLP++SDGS+LFLMHL +K+ N Sbjct: 287 SNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGS 346 Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GGR I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 406 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460 LSN+K ER+GKVQLI+ ++L +R G KR ++ DD + I + + Sbjct: 407 LSNQKAAERKGKVQLIDGSNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVMNATTLE 466 Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 S++ + FGYRR+ + RPLR+S + Sbjct: 467 ALGLEKAAEQKSNRGRQPATAKAEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526 Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510 +A L A++ +++ L Sbjct: 527 IATLRFAPKPFNVPMERLYDEFAVQWQAESYGDLSELEAEARAIIKAEFAELKEKQIKDL 586 Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557 S + +M++ A + + KT VK Sbjct: 587 LDSKLWLAQRSLMEKAQQIQAALGTQVGGKTQVSNDFNQFKLTLKGAIKTAGVKLDAKEN 646 Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES- 598 FI+A K+P A+PV G E+ D L + ENVP + Sbjct: 647 KQFIDAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAQ 706 Query: 599 -----IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653 I++Y EV PHV DA+I+ D KD E+G VGYEI FNR FY YQP R L +I Sbjct: 707 STSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLSEI 766 Query: 654 DAELKGVEAQIATLLEEM 671 DA+L V A++ LL+E+ Sbjct: 767 DADLDAVSAEMMKLLQEV 784 >gi|307244214|ref|ZP_07526329.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678] gi|306492364|gb|EFM64402.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678] Length = 670 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 250/690 (36%), Positives = 378/690 (54%), Gaps = 40/690 (5%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + + +NFIWK A+ L GD+K ++ VILPFT+L+RL+ L V + Sbjct: 1 MSINISDKSNFIWKIADLLRGDYKQHEYADVILPFTVLKRLDSVLIDNHDEVVKLNKTLT 60 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFS 121 N D + +GY FYN SE++ L N N+ YI FS+NA+ I E F+ Sbjct: 61 YKNKDP-FLCRASGYKFYNVSEFTFEKLKDDPNNLDENIVDYIKGFSENAREILEAFNIY 119 Query: 122 STIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + I RLEKAGLLY I F+ I+LHPD V + M I+E LIR+F +E A + TP Sbjct: 120 TQIERLEKAGLLYLIVSKFADEIDLHPDRVSNTEMGYIFEELIRKFSEMSNETAGEHFTP 179 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+V+ L A+L DPD SP + LYDP GTGG L+ +++ + I+ Sbjct: 180 REVIRLMVAVLFDPDMDKIS-SPSFMAKLYDPAAGTGGMLSAGISYAEELNERA----II 234 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +GQEL T+A+C + LI+ +NI G++ ++D ++F Y L NPP Sbjct: 235 EVYGQELNQSTYAICKSDTLIKG-------KGYENIYYGNSFTEDGVKNEKFDYMLCNPP 287 Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 FG +W+K +DAV+ E + G GRFG GLP+ISDGS LFL H+ +K++ P NGG R IV Sbjct: 288 FGVEWKKYQDAVKDEAQSLGFDGRFGAGLPRISDGSFLFLQHMISKMKDPKNGGSRIGIV 347 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 + SPLF G AGSGESEIRRW++EN +E I+ALP LF+ T I TY+WILSNRK++ R+ Sbjct: 348 FNGSPLFTGDAGSGESEIRRWIIENGWLETIIALPDQLFYNTGILTYVWILSNRKSKLRQ 407 Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 GK+QLI+ T + +R G KR+ ++++ ++I +IY S + ++S++ D F + +I Sbjct: 408 GKIQLIDGTSFFERMRKPLGDKRKKLSEEDTKKIANIYGSFVDSEYSKIFDEDDFAHYKI 467 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLS--------------PLHQSFWLDILKPMMQ 524 V RPLR++F++ + +L+ + + L+ + DI+ + Sbjct: 468 TVERPLRLNFMVSPDRIEKLKEETAFINLAKSRKKNEETRNKEIEEGEKLQRDIIHVLEM 527 Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 + + E I + K + A +NA KD A+ D G PD Sbjct: 528 MDDSVFYKDRAKFEKILNKAFKAAGISIKAPLKKAILNALSEKDETAEICRDKKGNPEPD 587 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 T L + E +P+ + I++YF REV P+ PDA+ID+ ++GYEI F R+FY+Y Sbjct: 588 TELRDIEQIPFKDDIEEYFKREVLPYAPDAWIDEDK--------TKIGYEIPFTRYFYKY 639 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMATE 674 + ++ E+K + I + + E Sbjct: 640 EELGDAKETLEEIKELGLSIQESISSLFEE 669 >gi|148263546|ref|YP_001230252.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] gi|146397046|gb|ABQ25679.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] Length = 777 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 286/787 (36%), Positives = 395/787 (50%), Gaps = 131/787 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + + A FIW A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV K+ Sbjct: 1 MTINFSQTAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEQSKPAVLAKHAEVS 60 Query: 64 GSNIDLESF----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 N+ E++ ++ SF+N S LS LG + ++NLE+YI FS +A+ IFE F Sbjct: 61 KMNLPEEAYEKMVLRATDESFFNISPMDLSKLGESGIKDNLENYIQCFSKDAREIFEYFK 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F+ I +L A LLYK+ + F+ +L P + + M ++E LIRRF +E A + T Sbjct: 121 FAEFIGQLNDANLLYKVVQKFANTDLSPQAISNYEMGLVFEELIRRFAESSNETAGEHFT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+V L T+L+ DD G+IRT+YDPT GTGGFL+ M +V + + Sbjct: 181 PRDIVRLTTSLVFMEDDEALTRD-GIIRTIYDPTAGTGGFLSSGMEYVYELNPKA----V 235 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + GQEL PE++A+C A MLI+ + I+ G+TLS D +F Y LSNP Sbjct: 236 MRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLYADKFDYMLSNP 288 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG W+K + + EH G GRFGPGLP++SDGS+LFLMHL +KL +GGGR I Sbjct: 289 PFGVDWKKVETEINDEHTLKGFAGRFGPGLPRVSDGSLLFLMHLISKLRDTKDGGGRIGI 348 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W+LSN+K ER Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWVLSNKKDPER 408 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-------------- 463 +GKVQLIN +L +R G KR ++ +D I + E Sbjct: 409 KGKVQLINGVNLCAKMRKSLGSKRNVMGEDDIATITRAFGRFERVDTLTLDKPDEVKSNR 468 Query: 464 ---------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-------- 500 S++ FGYRRI V RPLR+S L L Sbjct: 469 GRQADNPKAPEPKTFSSKIFATTDFGYRRITVERPLRLSVQFTGERLEELRFAPKPFNVV 528 Query: 501 ------------------------------------DITWRKLSPLHQSFWLDILKPMMQ 524 D+ +++ L + + +++ Sbjct: 529 MKWAYEQFGQSWTDADYGDLSDVAVEVRAYVKANFSDLKEKQIKELLNATLWRDQRALLK 588 Query: 525 QIYPYGWA----------------ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 A + + E K V ++A K+ Sbjct: 589 SGQTLQSALAGQMGLAAIVDGSCDDFNLFEEELKKALKLTGVNLDLREKKQLLDAVSWKN 648 Query: 569 PRADPVTD------------------VNGEWIPDTNLTEYENVPY------LESIQDYFV 604 P A V E+ D +L + EN+P E+++ YF Sbjct: 649 PEAQRVIKKVHKEKANPLYGLFAVAGKVVEFQADGDLRDNENIPLDPSRSVTETVEAYFK 708 Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664 +EV+PHVPDA+ID DEKD E+G VGYEI FNR FY Y P R L +IDA+L V A+I Sbjct: 709 KEVAPHVPDAWIDAGKRDEKDGELGIVGYEIPFNRHFYVYAPPRDLVEIDADLDVVSAEI 768 Query: 665 ATLLEEM 671 LL E+ Sbjct: 769 MALLREV 775 >gi|227496835|ref|ZP_03927103.1| type I restriction-modification system methyltransferase subunit [Actinomyces urogenitalis DSM 15434] gi|226833668|gb|EEH66051.1| type I restriction-modification system methyltransferase subunit [Actinomyces urogenitalis DSM 15434] Length = 687 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 243/697 (34%), Positives = 359/697 (51%), Gaps = 47/697 (6%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFG 63 T + +FIWK A L GD+K ++G VILPFT+L RL+ L T++ V + Sbjct: 8 TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGV 67 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + + + GY F+N S ++L TL N NL SY+ FS NA+ + + +DF Sbjct: 68 PAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYDFY 127 Query: 122 STIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + I RL+++ LLY+I F+ + P V + M +I+E LIRRF +E A + T Sbjct: 128 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHFT 187 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+V+ L +L PD PG + +LYDP GTGG L+ A+ + +I Sbjct: 188 PREVIQLMVEVLFGPDMNAIC-EPGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE-- 244 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +GQEL P+T+AV + +LI+ D ++ I G++L+ D G+ F+Y L NP Sbjct: 245 --VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCNP 295 Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------ 352 PFG +W+K D ++ E K G GRFG GLP+ISDGS LFL H+ +K++ Sbjct: 296 PFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQNAP 355 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R IV + SPLF G AG GES IRRW+LEND +EAI+ALP +F+ T I TY+W+LSN Sbjct: 356 GTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVLSN 415 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 RK R+ KVQLI+AT L+ +R G+KR+ + +D QI IY + S++ D Sbjct: 416 RKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFDTC 475 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--------------SFWLD 517 FG+ + V RPLR++F + RL ++ L+ + Sbjct: 476 EFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQQA 535 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 I+ + W ++ + K + + A + A G DP AD D Sbjct: 536 IIDTLETLDGQQVWKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTADICRDA 595 Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 G PD L + E +P E I Y REV P+ DAY+D ++GYEI F Sbjct: 596 KGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVDPDK--------TKIGYEIPF 647 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 R+FYQY+ AE++ + A+I + ++ E Sbjct: 648 TRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 684 >gi|91225111|ref|ZP_01260333.1| putative type I restriction-modification system, M subunit; N-6 Adenine-specific DNA methylase [Vibrio alginolyticus 12G01] gi|91190054|gb|EAS76325.1| putative type I restriction-modification system, M subunit; N-6 Adenine-specific DNA methylase [Vibrio alginolyticus 12G01] Length = 774 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 292/786 (37%), Positives = 403/786 (51%), Gaps = 129/786 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC LEP++ AV +Y Sbjct: 1 MTNN--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKDAVLTEYE 58 Query: 61 AFGGSNIDLESFV------------KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 + E+ + SF+NTS +L +G +N + NLE Y+ SFS Sbjct: 59 RVSKMGLPEEAAEKFLLRATFEEKDRSKNLSFFNTSPMNLGKMGQSNIKANLEKYVQSFS 118 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 +A+ IFE F F + LE A LLYK+ K F+ +L P+++ + M ++E LIRRF Sbjct: 119 KDAREIFEHFKFDEFVGLLEDANLLYKVVKKFATTDLSPNSISNHDMGLVFEELIRRFAE 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 +E A ++ TPRD+V L T+L+ DD + G+IRT+YDPT GTGGFL+ M +V Sbjct: 179 GSNETAGEYFTPRDIVRLTTSLVFMEDDEALTKD-GIIRTIYDPTAGTGGFLSSGMEYVH 237 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + ++ GQEL PE++A+C A MLI+ + I+ G+TLS D Sbjct: 238 ELNPKA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLP 286 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 +F Y LSNPPFG W+K + ++ EH + G GRFG GLP++SDGS+LFLMHL +K+ Sbjct: 287 ADQFDYMLSNPPFGVDWKKIEGEIKDEHQQKGFDGRFGAGLPRVSDGSLLFLMHLISKMR 346 Query: 348 LPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 N GGR I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T Sbjct: 347 DKKNVDNKVIDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNT 406 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE 460 IATY+W+LSN+K R+GKVQLIN +L T +R G KR + D++ R I + E Sbjct: 407 GIATYVWVLSNKKDPARKGKVQLINGANLSTKMRKSLGSKRHYLTDEEIRTITKNFGDFE 466 Query: 461 NGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA------ 500 S++ D FGYRR+ + RPLR+S + + L Sbjct: 467 EIDTLTKDGVTDNQKHFASKIFDTYQFGYRRLTIERPLRLSAQITDEAVESLRFAPKPFN 526 Query: 501 --------------------------------------DITWRKLSP-------LHQSFW 515 ++ +++ L+Q Sbjct: 527 AVMQAVFEQFGAEWTEDTYGSLTDVEKEVRVLIKADFPELKEKQIKDVLDSKLWLNQKAL 586 Query: 516 LDILKPMMQQIYP------YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569 +D K + + + E K +K FI+A K+ Sbjct: 587 MDAAKALQIAVGDSLGGKAQQSDDFNQFELTLKGAFKATGIKFDVKQKKQFIDAVTWKNQ 646 Query: 570 RADPVTDV---------------NG---EWIPDTNLTEYENVPYLES------IQDYFVR 605 A+PV G E+ D +L + ENVP S I+ YF R Sbjct: 647 DAEPVIKKVLKETAQPLYGAFDYKGKVVEFQQDGDLRDNENVPLDPSVSTSTLIESYFKR 706 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV PHV DA+I+ D+KD EIG VGYEI FNR FY YQP R L+ IDA+L V A I Sbjct: 707 EVQPHVADAWINADKRDDKDNEIGVVGYEIPFNRHFYVYQPPRTLEAIDADLDAVSADIM 766 Query: 666 TLLEEM 671 LL+E+ Sbjct: 767 KLLQEV 772 >gi|315656948|ref|ZP_07909833.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492340|gb|EFU81946.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 682 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 244/697 (35%), Positives = 360/697 (51%), Gaps = 47/697 (6%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFG 63 T + +FIWK A L GD+K ++G VILPFT+L RL+ L T++ V + Sbjct: 3 TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGV 62 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + + + GY F+N S ++L TL N NL SY+ FS NA+ + + +DF Sbjct: 63 PAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYDFY 122 Query: 122 STIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + I RL+++ LLY+I F+ + P V + M +I+E LIRRF +E A + T Sbjct: 123 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHFT 182 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+V+ L +L DPD PG + +LYDP GTGG L+ A+ + +I Sbjct: 183 PREVIQLMVEVLFDPDMNAIC-EPGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE-- 239 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +GQEL P+T+AV + +LI+ D ++ I G++L+ D G+ F+Y L NP Sbjct: 240 --VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCNP 290 Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------ 352 PFG +W+K D ++ E K G GRFG GLP+ISDGS LFL H+ +K++ Sbjct: 291 PFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQNAP 350 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R IV + SPLF G AG GES IRRW+LEND +EAI+ALP +F+ T I TY+W+LSN Sbjct: 351 GTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVLSN 410 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 RK R+ KVQLI+AT L+ +R G+KR+ + +D QI IY + S++ D Sbjct: 411 RKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFDTC 470 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--------------SFWLD 517 FG+ + V RPLR++F + RL ++ L+ + Sbjct: 471 EFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQQA 530 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 I+ + W ++ + K + + A + A G DP AD D Sbjct: 531 IIDTLETLDGQQVWKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTADICRDA 590 Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 G PD L + E +P E I Y REV P+ DAY+D ++GYEI F Sbjct: 591 KGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVDPDK--------TKIGYEIPF 642 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 R+FYQY+ AE++ + A+I + ++ E Sbjct: 643 TRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 679 >gi|170683208|ref|YP_001746680.1| type I restriction-modification system DNA methylase [Escherichia coli SMS-3-5] gi|170520926|gb|ACB19104.1| type I restriction-modification system DNA methylase [Escherichia coli SMS-3-5] gi|330908617|gb|EGH37136.1| type 1 restriction-modification system, DNA-methyltransferase subunit M [Escherichia coli AA86] Length = 659 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 346/676 (51%), Positives = 454/676 (67%), Gaps = 21/676 (3%) Query: 1 MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR VR+ Y Sbjct: 1 MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60 Query: 60 LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 LA S IDL + ++AG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F Sbjct: 61 LAEKQSGIDLGLVLPEIAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEF 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F TI LEKA LLY++ +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD V LAT L+L D+ +F E G+IRT+YDPTCGTGGFL+DA++ + + GS K+ Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 VP GQEL+P THA+ + M+IR +++ NI+QG+TLS D +FHY L+N Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG KWEK K VE+EHK GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPR 408 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+ +VQLIN D+WT +R +G KR+ ++D+Q I+ Y E ++ F YR Sbjct: 409 RKNQVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYR 468 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ + RPLR + G+A T++KL P Q+ W+ L + + PY WA Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA---- 523 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + ++K N K K SK+ A F + DP+ +P D G+ I D L + E++P+ Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFD 583 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ++DYF +EV PHVPDA+ID DEKD E+G VGYEINFNR+FYQY P R+L ID E Sbjct: 584 RDVEDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRE 643 Query: 657 LKGVEAQIATLLEEMA 672 LK EA+I LL E+A Sbjct: 644 LKACEARIQALLNEVA 659 >gi|66769485|ref|YP_244247.1| type I restriction-modification system, M subunit, putative [Xanthomonas campestris pv. campestris str. 8004] gi|66574817|gb|AAY50227.1| type I restriction-modification system, M subunit, putative [Xanthomonas campestris pv. campestris str. 8004] Length = 728 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 249/748 (33%), Positives = 380/748 (50%), Gaps = 99/748 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L IW+ A L G ++ + V+LP +LRRL+C LEPT+ AV +++ Sbjct: 2 NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLL 61 Query: 64 GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113 + ++ ++ G + YN S Y+ L + N NL +YI FS A+ Sbjct: 62 AKDTPEQAMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IFE F F I +L+ + L+ I K + I+LHPD + + M ++EHL+ RF + +E Sbjct: 122 IFERFKFGDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A D TPR+V+ L L+ + ++K PG++R++YDPTCGTGG L+++ + + Sbjct: 182 AGDHFTPREVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNAA 239 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTG 289 L +GQE E+ A+C + MLI+ + + NI +G TL +KD F G Sbjct: 240 A----HLHLYGQEYNDESWAICCSDMLIKDED-------TANIVKGDTLGDGKTKDGFEG 288 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +RFHY L+NPPFG +W+ K VE EH N G GRFG GLP I+DGS+LFL H+ K+ Sbjct: 289 ERFHYMLANPPFGVEWKDQKTVVENEHANHGFAGRFGAGLPAINDGSLLFLQHMIAKMHP 348 Query: 349 PPNG-----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 G G + AIV + SPLF+G AGSG S IRRW++E D ++ IVALP LF+ T I Sbjct: 349 YEEGHPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIEKDWLDTIVALPDQLFYNTGI 408 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENG 462 TY+W+++NRK EER+G VQLI+ T + +++ KR I+D+Q + ++Y + +G Sbjct: 409 YTYVWLVTNRKPEERQGYVQLIDGTRFFRKMMKSLNNKRNEISDEQIEALTELYGNYGDG 468 Query: 463 K-----------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + SR+ + R FG+ ++ V RPLRM+F +ARL+ + Sbjct: 469 ESADVVIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPGRIARLDEQSAFA 528 Query: 506 KLSPLHQSFWLDILKP---------------MMQQIYPYGWAESFVKESIKSNEAKTLKV 550 L+ + + + + +++ V E+ AK + Sbjct: 529 NLATSKKRKDEKAARQEIAEGQAMQRSIRELLAELAAKGIYSDREVFEADLEKAAKKAGI 588 Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------ 598 K A A G +DP+A D G PD+ L + EN+ E Sbjct: 589 KLPAPIRKAIFVALGERDPQAKICRDAKGRPEPDSELRDTENISLPEGTELPLPMAFGPD 648 Query: 599 -------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645 I+DY REV PHV DA++D +VGYEI NR FY Y+ Sbjct: 649 KPNDDLVEAFRDTIEDYMRREVLPHVADAWVDF--------SKTKVGYEIPINRHFYVYK 700 Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673 P R L I+++++ +E +IA LL+ + Sbjct: 701 PPRPLPQIESDIRQLEGEIADLLKGLLA 728 >gi|332664153|ref|YP_004446941.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] gi|332332967|gb|AEE50068.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] Length = 653 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 248/680 (36%), Positives = 372/680 (54%), Gaps = 42/680 (6%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + N IW+ A+ L G ++ + +V+LP T+LRR +C L PT+ AV ++Y Sbjct: 2 ANHNDHINLIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKEAVLKEYQQLDSK 61 Query: 66 -----NIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDF 118 + K++ F+N S + L + +L SYI FS N + IFE F Sbjct: 62 YHGQDGVIDSRLNKISKQQFHNHSPLTFERLKGAPDSIAKDLVSYINGFSKNVRRIFEYF 121 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +F I R+ +A +LY + FS ++LHP+ V + M I+EHLIR+F +E A D Sbjct: 122 EFEKEIERMNEANILYLVVSRFSTVDLHPNAVSNTDMGKIFEHLIRKFNELANETAGDHF 181 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L LL DD L PG +RT++DP CGTGG L +A ++ + K+ Sbjct: 182 TPREVIRLMVNLLFINDDKLLTT-PGTVRTMFDPACGTGGMLAEAQAYLREHHLEAKLYT 240 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 +GQ+ A + MLI+ + + +NI+ G +L +D F +F Y LSN Sbjct: 241 ----YGQDYNKRAFATAASDMLIKEVAHNGLG---ENIKFGDSLIEDQFKENKFDYLLSN 293 Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----G 353 PPFG W+K + + +E+ K G GRFG GLP+++DG++LFL H+ +K E G Sbjct: 294 PPFGVDWKKQQSEITRENQKMGFAGRFGAGLPRVNDGALLFLQHMISKFEPVDEANRKYG 353 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 R AIV S SPLF G AGSGES IRRW++END +EA+V+LP +F+ T I TY+WI++NR Sbjct: 354 SRLAIVFSGSPLFTGGAGSGESNIRRWIIENDWLEAVVSLPEQMFYNTGIGTYVWIVTNR 413 Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + R+GK+QL++A D + +R G KRR I ++Q I+ +Y E K +++ + Sbjct: 414 KEKRRKGKIQLLDARDFFVPMRRSLGDKRREIAEEQIVDIVQLYGRFEETKHAKIFNNTD 473 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 FGY R+ V RPLR+ + + +R LD ++ + + + Sbjct: 474 FGYTRVTVERPLRLRYQMTLEDKSRFLDACPH----------LLDDIQAIDKALGREPIM 523 Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592 + + K L++K + F + F ++DP A PV + PD+ L ++EN Sbjct: 524 DWNKTDQRIR---KILRLKWKATEHKLFRDVFTQRDPEAVPVLKSKNSYEPDSELRDFEN 580 Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652 +P E ++ YF REV PHVPDA+ID+ +VGYEINFN FY + P RKL+ Sbjct: 581 IPLSEDVEKYFQREVLPHVPDAWIDRSKD--------KVGYEINFNSHFYVFLPPRKLEL 632 Query: 653 IDAELKGVEAQIATLLEEMA 672 ID ELK VE +I LL+E+ Sbjct: 633 IDKELKEVEEEILKLLKEVT 652 >gi|300724722|ref|YP_003714047.1| putative type I restriction-modification system DNA methylase (HsdM) [Xenorhabdus nematophila ATCC 19061] gi|297631264|emb|CBJ91959.1| putative type I restriction-modification system DNA methylase (HsdM) [Xenorhabdus nematophila ATCC 19061] Length = 760 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 298/773 (38%), Positives = 402/773 (52%), Gaps = 117/773 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC LE + AV +Y Sbjct: 1 MTN--SNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEQNKDAVVAEYE 58 Query: 61 AFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 + E+ F G +F+NTS +L +G ++NLE+Y+ SFS +A+ IF Sbjct: 59 RIKPMKLLEEAQEKFLFRAANGLAFFNTSPMNLGKMGQNGIKDNLENYVQSFSKDAREIF 118 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E F+F + L++A LLYK+ K F+ L PD V + M I+E LIRRF +E A Sbjct: 119 EYFNFYEFVGLLDEANLLYKVVKKFATTPLSPDVVSNHEMGLIFEELIRRFAESSNETAG 178 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPRD+V L T+L+ D+ + PG IRT+YDPT GTGGFL+ M +V Sbjct: 179 EHFTPRDIVDLTTSLVFTGDEDSYT--PGSIRTIYDPTAGTGGFLSAGMEYVL----KGS 232 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +V GQEL PE++A+C MLI+ + I+ G+TLS D +F Y Sbjct: 233 PLARMVAFGQELNPESYAICKGDMLIKGQDV-------SRIKLGNTLSNDQLPADKFDYM 285 Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELP----- 349 LSNPPFG W+K ++ ++ EH G GRFG GLP++SDGS+LFLMHL +K+ Sbjct: 286 LSNPPFGVDWKKIEEDIKSEHAVKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRDLRFVDG 345 Query: 350 -PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G R I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W Sbjct: 346 RAIEGSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVW 405 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK---- 463 ILSN+K ER+GKVQLINAT+L + +R G KR + D+ R I Y E Sbjct: 406 ILSNKKVPERKGKVQLINATNLSSKMRKSLGSKRHYLTDEAIRAITLNYGQFEEADTQIQ 465 Query: 464 ----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA------------- 500 S++ + TFGYRR+ + RPLR+S + + L Sbjct: 466 DGATDSQKPFVSKIFETHTFGYRRLTIERPLRLSVQITDQAVESLRFAPKPFNAVMADIY 525 Query: 501 --------------------------DITWRKLSP------------LHQSFWLDILKPM 522 + +L L Q L+ + + Sbjct: 526 DAFGSEWTEETYGSLNKVEDKIRAMIKKNFPELKEKQIKDLLDSKTWLFQKTLLEKAQKL 585 Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT------- 575 I + + E I + KT +K FI+A K+P A+PV Sbjct: 586 QSIIGSEQFNDFNQFEQILKDALKTAGIKLETKEKKQFIDAITWKNPDAEPVIAKVLKEK 645 Query: 576 -----------DVNGEWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDK 618 D E+ D +L + ENVP + I+DYF REV PHV DA+I+ Sbjct: 646 AQPLYGAFNYQDKVVEFQQDGDLRDNENVPLDPTTTTTQLIEDYFKREVQPHVADAWINA 705 Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 D KD EIG +GYEI FNR FY YQP R L IDA+L V A+I LL+E+ Sbjct: 706 DKRDGKDGEIGMIGYEIPFNRHFYVYQPPRDLAAIDADLDKVSAEIMQLLQEV 758 >gi|119896296|ref|YP_931509.1| site-specific DNA-methyltransferase [Azoarcus sp. BH72] gi|119668709|emb|CAL92622.1| Site-specific DNA-methyltransferase (adenine-specific) [Azoarcus sp. BH72] Length = 613 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 260/674 (38%), Positives = 372/674 (55%), Gaps = 71/674 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +L++FIW A+ L GD+K +++GKVILPFT+LRRL+C LE T+ +V + A + Sbjct: 2 NHQALSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEATKPSVLAELEAKTKAG 61 Query: 67 IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ + ++ +G SFYNT+ L L + R NL +Y+ +FS A+ IFE FDF + Sbjct: 62 LNPDPFLLRKSGQSFYNTAPLDLVKLLGDQDHIRQNLYTYVQAFSPAARDIFERFDFFTQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + RL KA LLY + + F+ I+LHP+ V + M ++E LIR+F +E A + TPR+V Sbjct: 122 VERLAKANLLYLVTEKFANIDLHPEAVDNTSMGLVFEELIRKFAEISNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L LL DD + ++RT+YDPT GTGG L+ A + + ++ Sbjct: 182 IRLMVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEFLLEHNPQARL----TMF 237 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL E++A+C A MLI+ + NI G+TLS D ++F Y LSNPPFG Sbjct: 238 GQELNDESYAICKADMLIKGQDV-------ANIVAGNTLSDDGHGARKFDYMLSNPPFGV 290 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + AV +EH+ G GRFGPGLP++SDGSMLFLMHL +K+ +GG R IVL+ Sbjct: 291 EWKKVEKAVRQEHEQKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAQDGGSRFGIVLNG 350 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK +R+G+V Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWIISNRKKADRKGQV 410 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLI+A+ W +R G KR+ ++D + ++ S ++ I V Sbjct: 411 QLIDASSFWQKMRKSLGSKRKEMSDAHIATVTRLFGSFTEAEY-------------ITV- 456 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI---YPYGWAESFVKE 538 D G E + +P + + + +I +G+ V+ Sbjct: 457 --------FDAAGQQLGEPQLVTNTDTPPKAPEGGRLKRVPIARIFRNQDFGYTTITVER 508 Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598 +K K + G+ D+ L + ENVP E Sbjct: 509 PLKDEAGKPVLGSKGA----------------------RRGKPQADSALRDTENVPLGED 546 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 I YF REV PH PDA+ID+ +VGYEI FNR FY ++P R L ID ELK Sbjct: 547 ISAYFKREVLPHAPDAWIDETKS--------KVGYEIPFNRHFYVFEPPRSLHAIDEELK 598 Query: 659 GVEAQIATLLEEMA 672 V A I +LE +A Sbjct: 599 TVSANIMKMLEGLA 612 >gi|149180786|ref|ZP_01859289.1| type I restriction-modification system methyltransferase subunit [Bacillus sp. SG-1] gi|148851576|gb|EDL65723.1| type I restriction-modification system methyltransferase subunit [Bacillus sp. SG-1] Length = 734 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 260/693 (37%), Positives = 381/693 (54%), Gaps = 48/693 (6%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M F NFIW AE L G +K D+GKVILP +LRR +C LE T+ V EK+ Sbjct: 66 MINFNDK----VNFIWTIAEILRGPYKPEDYGKVILPMAVLRRFDCVLEDTKEEVLEKHE 121 Query: 61 AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 F E +VA F N S+Y S L S N +NL YI FS A+ I + Sbjct: 122 QFENLPEESRDEILNRVAQQKFSNISKYDFSKLLIDSDNIADNLRDYINGFSKTARDIID 181 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F+F + I ++E+ LLY + K FS I+LHP+ V + M I+E LIRRF + A D Sbjct: 182 YFNFDTKIEKMERNDLLYLVVKRFSEIDLHPEVVSNVEMGYIFEELIRRFSEDA--EAGD 239 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TPR+VV L LL D+ + + G+ +TLYD GTGG + A ++ + + Sbjct: 240 HYTPREVVRLMVNLLFLEDEDILTKQ-GITQTLYDSCAGTGGMGSVAQEYLMELNPTADL 298 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 QE+ E++A+C A +LI+ E ++NI+ G+TLS D F +F Y + Sbjct: 299 E----FFAQEINEESYAICKADILIKGEE-------ARNIRFGNTLSNDAFPEMKFDYLI 347 Query: 297 SNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352 +NPP+G +W+ + AV+ E++N G GRFG GLP+ISDG +LFL HL +K++ Sbjct: 348 TNPPYGVEWKPAEKAVKAEYENLGYNGRFGAGLPRISDGQLLFLQHLVSKMKPVTEDNPK 407 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R AI+++ SPLF G AGSGESEIRR+L+ENDL+E IV +PTDLF+ T I+TY+WIL+N Sbjct: 408 GSRIAIIMNGSPLFTGDAGSGESEIRRYLIENDLVEGIVGMPTDLFYNTGISTYIWILTN 467 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K+ R+GK+QL+NA D + ++ G KR+ ++D ++I+ +Y + + ++ D Sbjct: 468 HKSSVRKGKIQLVNAVDYYQKMKKSMGSKRKELSDKHLQEIVRLYGDFVDNEKVKIFDNE 527 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG- 530 FGY++I V RPLR++F +D + L T+ L+ + I + + Sbjct: 528 EFGYQKITVERPLRLNFKIDDARIQELHNQTTFVNLAKSKKKGEAGIQETEQGREQQEKI 587 Query: 531 ------------WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578 + +I K L + + + + A +NA +KD AD D Sbjct: 588 EEALRSIKNDKVYKNRAEFTNILKKLFKQLDLTVNATLLKATLNALSQKDETADICIDSK 647 Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638 G PDT+L + ENVP ESI +YF REV PHVP+A+ID ++GYEI F Sbjct: 648 GNPEPDTDLRDTENVPLKESINEYFKREVKPHVPNAWIDDAR--------TKIGYEIPFT 699 Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 R FY+Y R ++I E+K +E I L+++ Sbjct: 700 RHFYEYTALRSSEEIKEEIKELEKDILRKLKKV 732 >gi|294054711|ref|YP_003548369.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221] gi|293614044|gb|ADE54199.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221] Length = 753 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 287/763 (37%), Positives = 390/763 (51%), Gaps = 107/763 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + +LA +IW A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV K Sbjct: 1 MSDTPNNLAAYIWSLADLLRGDFKQSQYGRVILPFTLLRRLECVLEASKPAVLAKADEIK 60 Query: 64 GSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + E+ ++ G SF+NTS+ LS LG + NLESY+ SFS +A+ IFE F Sbjct: 61 DKGLSEEAQEKMLLRAGGLSFFNTSKMDLSKLGESGIAANLESYVQSFSKDAREIFEHFK 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 FS I L A LLYK+ + G +L P + + M ++E LIR+F +E A + T Sbjct: 121 FSEFIGLLGDANLLYKVVQRVKGADLSPAAISNHDMGLVFEELIRKFAESSNETAGEHFT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PRD+V L T+L+ DD + G+IRT+YDPTCGTGGFL+ M +V + + Sbjct: 181 PRDIVRLTTSLVFMEDDDALTKQ-GIIRTIYDPTCGTGGFLSSGMEYVHELNPQA----V 235 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + GQEL PE++A+C A MLI+ E NI+ G+TLS D +F Y LSNP Sbjct: 236 MRAFGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSNDQLYADKFDYMLSNP 288 Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG W+K + + EH + G GRFGPGLP++SDGS+LFL+HL +KL GG R I Sbjct: 289 PFGVDWKKIEGDIRTEHTQKGFDGRFGPGLPRVSDGSLLFLLHLLSKLRDASEGGARIGI 348 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W+LSN+K +R Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYILEADLLETIVALPTDMFYNTGIATYVWVLSNKKAADR 408 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE--------NGKFSRMLD 469 +G+VQLIN LW +R G KRR + D +I + S E S+ Sbjct: 409 KGQVQLINGVHLWDPMRKSLGSKRRQLGDGHIAKITRTFGSFEAIAPQPLDEADASKTFA 468 Query: 470 -----YRTFGYRRIKVLRPLRMSFILDKTGLARLEA------------------------ 500 FGYRRI + RPLR S+ + L Sbjct: 469 AKLFKTHEFGYRRITIERPLRESYQFSDERIDTLRFAPKPLNAAMQWVYGEFGADWTDAE 528 Query: 501 -------------------DITWRKLSPLHQSFWLDILKPMMQQ--------IYPYGWAE 533 + +L LD + Q+ + + Sbjct: 529 DCALYGKLREHEADIRAKIKADFPELKEAKIKDLLDAKTWLAQKSILLTARALQAAIGTD 588 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV---------------- 577 + K +K A K+P A+ V Sbjct: 589 QHDDMNGYDASLKATGIKLDAKEKKQITAAVSWKNPEAEKVIKKIHKSGKAEPFYGRFAV 648 Query: 578 NG---EWIPDTNLTEYENV------PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 +G E+ PD +L ++ENV P + YF +EV PHVPDA+ID +D D++I Sbjct: 649 DGQIIEYKPDGDLRDFENVALAPSQPVNAVNEAYFQKEVLPHVPDAWIDGTKVDALDEQI 708 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 G VGYEI FNR FYQYQP R L+ ID +L V I LL+E+ Sbjct: 709 GIVGYEIPFNRHFYQYQPPRDLEAIDRDLDAVSGDIMKLLQEV 751 >gi|227540802|ref|ZP_03970851.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227183431|gb|EEI64403.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 682 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 247/697 (35%), Positives = 365/697 (52%), Gaps = 47/697 (6%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFG 63 T + +FIWK A L GD+K ++G VILPFT+L RL+ L T+ V + + Sbjct: 3 TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVSTKDKVAQIRDQKGV 62 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + + K GY F+NTS+++L TL N NL SY+ FS NA+ + + +DF Sbjct: 63 PAEVKRLQYAKATGYPFWNTSKFTLHTLKNDPDNLEGNLRSYVEGFSPNARDVMKSYDFY 122 Query: 122 STIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + I RL+++ LLY+I F+ + P V + M +I+E LIRRF +E A ++ T Sbjct: 123 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEYFT 182 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+V+ L +L DPD PG + +LYDP GTGG L++A+ + +I Sbjct: 183 PREVIQLMVEVLFDPDMNAIC-EPGFMASLYDPGVGTGGMLSEAIERAHELNEEARIE-- 239 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +GQEL P+T+AV + +LI+ D ++ I G++L+ D G+ F+Y L NP Sbjct: 240 --VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCNP 290 Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------ 352 PFG +W+K D ++ E K G GRFG GLP+ISDGS LFL H+ +K++ Sbjct: 291 PFGVEWKKYADPIKDEAEKRGSKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADTQNAP 350 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R IV + SPLF G AG GES IRRW+LEND +EAIVALP +F+ T I TY+W+LSN Sbjct: 351 GTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIVALPDQMFYNTGILTYIWVLSN 410 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 RK R+ KVQLI+AT + +R G+KR+ + D QI IY G+ S++ D R Sbjct: 411 RKASIRKNKVQLIDATKFFARMRKPLGEKRKYLTADNIAQIARIYGDFTEGEHSKIFDTR 470 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--------------SFWLD 517 FG+ + V RPLR++F + R+ ++ L+ + Sbjct: 471 EFGFHEVTVERPLRLNFTATPERIERVWEQTPFKNLATSKKRSEAARTQEIEDGKKTQRT 530 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 I+ + W ++ K + + A + A G DP AD D Sbjct: 531 IIDAIETLGGQRVWKNRDEFTAVLKTAFKDAGLAVRIPLLKAIVVALGETDPTADICRDT 590 Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 G PD L + E +P E I Y REV P+ DAY+D ++GYEI F Sbjct: 591 KGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVDPDK--------TKIGYEIPF 642 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 R+FYQY+ + AE++ + A+I + ++ +E Sbjct: 643 TRYFYQYEELGDPTETLAEIQTLGAEIQASIAKLFSE 679 >gi|229520169|ref|ZP_04409596.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae TM 11079-80] gi|229342763|gb|EEO07754.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae TM 11079-80] Length = 660 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 348/676 (51%), Positives = 453/676 (67%), Gaps = 21/676 (3%) Query: 1 MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR VR+ Y Sbjct: 1 MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60 Query: 60 LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 LA S IDL + +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F Sbjct: 61 LAEKQSGIDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEF 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F TI LEKA LLY++ F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM Sbjct: 121 KFGQTIEDLEKAKLLYRMVSYFANLDLHPDVVSDRVLSDAYEELIFKFASSVNEKAGEFM 180 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD V LAT L+L D+ +F E G+IRT+YDPTCGTGGFL+DA++ + + GS K+ Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 VP GQEL+P THA+ + M+IR +++ NI+QG+TLS D +FHY L+N Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG KWEK K VE+EHK GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IVLS SPL NG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K Sbjct: 349 IVLSGSPLLNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEPR 408 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+ +VQLIN D+WT +R +G KR+ ++D+Q I+ Y E ++ F YR Sbjct: 409 RKNQVQLINLADIWTPMRKSQGSKRKYLSDEQIDDIVRAYDGFETSDNCKLFSTTDFAYR 468 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ + RPLR + G+A T++KL P Q+ W+ L + + PY WA Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA---- 523 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + ++K N K K SK+ A F DP+ +P D G+ I D L + E++P+ Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFLIVDPQFEPALDEKGQVIADPKLKDTESIPFD 583 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ++DYFV+EV PHVPDA+ID DEKD E+G +GYEINFNR+FYQY P R+L IDAE Sbjct: 584 RDVEDYFVQEVLPHVPDAFIDHSVRDEKDGEVGIIGYEINFNRYFYQYVPPRELTVIDAE 643 Query: 657 LKGVEAQIATLLEEMA 672 LK EA+I LL E+A Sbjct: 644 LKACEARIQALLNEVA 659 >gi|323160945|gb|EFZ46869.1| N-6 DNA Methylase family protein [Escherichia coli E128010] Length = 659 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 344/676 (50%), Positives = 452/676 (66%), Gaps = 21/676 (3%) Query: 1 MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR VR+ Y Sbjct: 1 MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60 Query: 60 LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 LA S IDL + ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F Sbjct: 61 LAEKQSGIDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEF 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F TI LEKA LLY++ +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD V LAT L+L D+ +F E G+IRT+YDPTCGTGGFL+DA++ + + GS K+ Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 VP GQEL+P THA+ + M+IR +++ NI+QG+TLS D +FHY L+N Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG KWEK K VE+EHK GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPR 408 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+ +VQLIN D+WT +R +G KR+ ++D+Q I+ Y E ++ F YR Sbjct: 409 RKNQVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYR 468 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ + RPLR + G+A T++KL P Q+ W+ L + + PY WA Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA---- 523 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + ++K N K K SK+ A F + DP+ +P D G+ I D L + E++P+ Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFD 583 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ++DYF +EV PHVPDA+ID DEKD E+G VGYEINFNR+FYQY P R+L ID E Sbjct: 584 RDVEDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRE 643 Query: 657 LKGVEAQIATLLEEMA 672 LK EA+I L E+A Sbjct: 644 LKACEARIQALPNEVA 659 >gi|289706814|ref|ZP_06503157.1| N-6 DNA Methylase [Micrococcus luteus SK58] gi|289556499|gb|EFD49847.1| N-6 DNA Methylase [Micrococcus luteus SK58] Length = 653 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 258/674 (38%), Positives = 369/674 (54%), Gaps = 34/674 (5%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S +L+NF+W A+ L G FK +G ++LP T+LRR+E ++P R E Sbjct: 3 SPQNLSNFVWGIADQLRGVFKPNQYGTLVLPLTILRRMEAVMDPHRGFFAELAAKGHPDF 62 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 + G +FYN S ++L + R NL +Y+ FS N +F ++F T+ Sbjct: 63 VLDNLVQSRTGLTFYNLSPFTLDRILQEPDLLRTNLLAYVDGFSQNVADLFTYYEFDKTV 122 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 A+L++ L+ + + F+ I+L PD V + M ++E LIRRF + +E A + TPRD V Sbjct: 123 AKLDEHDRLFLVLQQFASIDLSPDAVSNAEMGTLFEDLIRRFAAASNETAGEHFTPRDAV 182 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 L LL DD + P +RT+YDPT GTGG L+ + + ++ G Sbjct: 183 KLLVDLLTANDDDVLTGYP--VRTVYDPTAGTGGMLSLLDERLRRMNPNAEV----RLFG 236 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QEL +++A+C + +L + ++D I +G TL D +RF Y LSNPP+G Sbjct: 237 QELNDQSYAICKSELLGKGQDAD-------GIARGDTLKNDAHLTERFDYVLSNPPYGGD 289 Query: 305 WEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 W+ + AVEKE G RF G P ISDG MLFL +A+KL GGGRA IVL+ S Sbjct: 290 WKASRTAVEKEIAVGGATNRFPGGTPAISDGQMLFLQLVASKLRPVSEGGGRAGIVLNGS 349 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 PLF G AGSG SEIRRWLLE+DL++ IVALPTD+F+ T IATY+W+L N K +RRG+VQ Sbjct: 350 PLFTGGAGSGPSEIRRWLLESDLVDVIVALPTDMFYNTGIATYVWVLDNNKPADRRGRVQ 409 Query: 424 LINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSR-----ENGKFSRMLDYRTFGYRR 477 LI+A +T + RN G K + ++ R+++LDIY +N +FS++L + FGYR Sbjct: 410 LIDARTFFTKLRRNVGSKNKELSTADRQRVLDIYRDFDAQSEDNAEFSKVLTAQDFGYRE 469 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 I V RPL++ F + +A A KL +S L + ++ W Sbjct: 470 ITVERPLQLRFEVGDATIAAAFATKPVDKLPDDGRSALETALASLRGRV----WDHQPTF 525 Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597 K V A + A A G DP A+ + GE PDT+L + E VP+ Sbjct: 526 VLELKKALKEHGVTAGAPLVKALAGAIGVHDPEAEVAKNKKGEPEPDTSLRDTELVPFGR 585 Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657 I +YF EV+PHVP A+I D+ ++GYEI F R FY+Y P R L++IDAEL Sbjct: 586 DIHEYFEAEVAPHVPGAWI--------DESKTKIGYEIPFTRLFYKYVPPRPLEEIDAEL 637 Query: 658 KGVEAQIATLLEEM 671 K + A+I LL+E+ Sbjct: 638 KQLTAEIIELLQEV 651 >gi|53718591|ref|YP_107577.1| putative type I restriction-modification methylase [Burkholderia pseudomallei K96243] gi|52209005|emb|CAH34944.1| putative type I restriction-modification methylase [Burkholderia pseudomallei K96243] Length = 613 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 261/672 (38%), Positives = 374/672 (55%), Gaps = 67/672 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +L++FIW A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV ++ A Sbjct: 2 NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKG 61 Query: 67 IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++ E F+ V FYNTS L L + R NL +YI +FS A+ IFE FDF + Sbjct: 62 LNPEPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYT 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + RL KA LLY + + F+ I+LHP V + M ++E LIR+F +E A + TPR+ Sbjct: 122 QVERLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L LL DD + ++R +YDPT GTGG L+ A + + ++ Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVARL----RM 237 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQEL E++A+C A MLI+ + +NI G+TLS D G++F Y LSNPPFG Sbjct: 238 YGQELNDESYAICKADMLIKGQDV-------ENIVAGNTLSDDGHAGRQFDYMLSNPPFG 290 Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 +W+K + V E++ G GRFGPGLP++SDGSMLFL+HL +K+ GG R IVL+ Sbjct: 291 VEWKKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLN 350 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGF 410 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 VQLI+A+ W +R G KRR ++D+ + ++ + + + + D R V Sbjct: 411 VQLIDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVV 470 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 + + + + +R +G+ V+ ++ Sbjct: 471 PAGSNVPNVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERAL 510 Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 + + K + G K + G+ D++L + ENVP + I Sbjct: 511 RDEQGKVV---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIG 548 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 YF REV PH PDA+I D++ +VGYEI FNR FY ++P R L ID ELK V Sbjct: 549 VYFEREVLPHAPDAWI--------DEQKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600 Query: 661 EAQIATLLEEMA 672 A I +LEE+A Sbjct: 601 SANIMRMLEELA 612 >gi|167718507|ref|ZP_02401743.1| putative type I restriction-modification methylase [Burkholderia pseudomallei DM98] Length = 613 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 261/672 (38%), Positives = 374/672 (55%), Gaps = 67/672 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +L++FIW A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV ++ A Sbjct: 2 NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKG 61 Query: 67 IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++ E F+ V FYNTS L L + R NL +YI +FS A+ IFE FDF + Sbjct: 62 LNPEPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYT 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + RL KA LLY + + F+ I+LHP V + M ++E LIR+F +E A + TPR+ Sbjct: 122 QVERLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L LL DD + ++R +YDPT GTGG L+ A + + ++ Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVARL----RM 237 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQEL E++A+C A MLI+ + +NI G+TLS D G++F Y LSNPPFG Sbjct: 238 YGQELNDESYAICKADMLIKGQDV-------ENIVAGNTLSDDGHAGRQFDYMLSNPPFG 290 Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 +W+K + V E++ G GRFGPGLP++SDGSMLFL+HL +K+ GG R IVL+ Sbjct: 291 VEWKKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLN 350 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGF 410 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 VQLI+A+ W +R G KRR ++D+ + ++ + + + + D R V Sbjct: 411 VQLIDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVV 470 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 + + + + +R +G+ V+ ++ Sbjct: 471 PAGSNVPDVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERAL 510 Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 + + K + G K + G+ D++L + ENVP + I Sbjct: 511 RDEQGKVV---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIG 548 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 YF REV PH PDA+I D++ +VGYEI FNR FY ++P R L ID ELK V Sbjct: 549 VYFEREVLPHAPDAWI--------DEQKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600 Query: 661 EAQIATLLEEMA 672 A I +LEE+A Sbjct: 601 SANIMRMLEELA 612 >gi|261211185|ref|ZP_05925474.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC341] gi|260839686|gb|EEX66297.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC341] Length = 788 Score = 695 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 286/800 (35%), Positives = 397/800 (49%), Gaps = 143/800 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV + Sbjct: 1 MTNN--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKEAVVIQAE 58 Query: 61 AFGGSNIDLESFVK-----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 N+ E+ K G +F+NTS +L +G ++ + NLE YI SFS Sbjct: 59 KIKAMNLPEEAQEKMLFRATQTPDNAKGLTFFNTSPMNLGKMGQSDIKANLERYIQSFSA 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 +A+ IFE F F + L A LLYK+ K F+ +L P + + M ++E LIRRF Sbjct: 119 DAREIFEHFKFDEFVGLLNDANLLYKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAES 178 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 +E A + TPRD+V L T+L+ DD + G+IRT+YDPT GTGGFL+ M +V + Sbjct: 179 SNETAGEHFTPRDIVRLTTSLVFMEDDEALTKD-GIIRTIYDPTAGTGGFLSSGMEYVHE 237 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 ++ GQEL PE++A+C A MLI+ + I+ G+TLS D Sbjct: 238 LNPKA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPA 286 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +F Y LSNPPFG W+K + ++ EH G GRFG GLP++SDGS+LFLMHL +K+ Sbjct: 287 DKFDYMLSNPPFGVDWKKIEGEIKDEHTLKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRD 346 Query: 349 PP------NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 + GGR I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T Sbjct: 347 THSVDGTVSDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTG 406 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE- 460 IATY+W+LSN+K ER+G+VQLI+ ++L +R G KR ++++D + I + E Sbjct: 407 IATYVWVLSNKKAAERKGQVQLIDGSNLCGKMRKSLGSKRNVMSEDDIKTITRTFGDFEV 466 Query: 461 ----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 S++ D FGYRR+ + RPLR+S + Sbjct: 467 VDARELDKPAEQKSSRGRQAANPKADTPKTFASKIFDTHEFGYRRLTIERPLRLSAQITD 526 Query: 493 TGLARLEA--------------------------------------------DITWRKLS 508 + L ++ +++ Sbjct: 527 GAVDSLRFAPKPFNAVMQAVFEQFGTEWDDNTYGTLIEVEAEVRALIKADFPELKEKQIK 586 Query: 509 P-------LHQSFWLDILKPMMQQIYPYG------WAESFVKESIKSNEAKTLKVKASKS 555 L Q +D K + + + E K +K Sbjct: 587 DVLDSKLWLSQKTLMDDAKALQVAMGDKLGGKAQQSDDFNQFELTLKGAFKATGIKFDAK 646 Query: 556 FIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLE 597 F +A K A+PV G E+ D +L + ENVP Sbjct: 647 QKKQFTDAITWKSQDAEPVIKKVLKEDAQPLYGAFDYKGKVVEFQQDGDLRDNENVPLDP 706 Query: 598 S------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 S I+ YF REV PHV DA+I+ D+KD EIG VGYEI FNR FY YQP R L+ Sbjct: 707 SVSTSTLIESYFKREVQPHVADAWINADKRDDKDAEIGVVGYEIPFNRHFYVYQPPRALE 766 Query: 652 DIDAELKGVEAQIATLLEEM 671 IDA+L V I TLL+E+ Sbjct: 767 AIDADLDAVSKDIMTLLQEV 786 >gi|229491487|ref|ZP_04385308.1| type I restriction-modification system methyltransferase subunit [Rhodococcus erythropolis SK121] gi|229321168|gb|EEN86968.1| type I restriction-modification system methyltransferase subunit [Rhodococcus erythropolis SK121] Length = 658 Score = 695 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 267/684 (39%), Positives = 368/684 (53%), Gaps = 39/684 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT S +AN IW A+ L GD+K ++G+VILP TLLRRL+ +EPTR AVR + Sbjct: 1 MT-TAPSHTKMANDIWSIADLLRGDYKRHEYGQVILPLTLLRRLDTVMEPTRDAVRARDS 59 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFEDF 118 A N A FYNTS ST+ + NL YI FS N + + F Sbjct: 60 ALDMQN-KQRMLEIAAKLPFYNTSAQDFSTIAADANSVAKNLRDYINGFSSNIREVLARF 118 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 D + I RL A LLY++ F+ ++ D + + M ++EHLIRRF + +E A + Sbjct: 119 DLDNQITRLASAKLLYQVVGKFAEMKD-LDKLSNHDMGYVFEHLIRRFAEDSNETAGEHF 177 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L LL+ PD G + + DP CGTGG LT A +H+ ++ Sbjct: 178 TPREVIKLMVNLLIAPDADTVA-GEGQVINILDPACGTGGMLTAAEDHIKSINPKAEV-- 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 GQEL E+ A+C + ML+R D ++ G++ S+D + K+F Y L+N Sbjct: 235 --YLFGQELNGESWAICQSDMLMRSQRGD--------VKFGNSFSEDGYESKKFDYMLAN 284 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG +W+K KD V E + G GRFG G P+I+DGS LFL H+ +K+E G R AI Sbjct: 285 PPFGVEWKKVKDDVLDEAERGHAGRFGAGTPRINDGSFLFLQHMISKMEPVEGKGARLAI 344 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V + SPLF G AGSGESEIRRW+LEND +E +VALP LF+ T I+TY WILSNRK ++ Sbjct: 345 VFNGSPLFTGAAGSGESEIRRWILENDWLEGVVALPDQLFYNTGISTYFWILSNRKPKKL 404 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-------- 469 + KV L++A D W +R G KR+ I+ Q I +YV Sbjct: 405 QKKVILLDARDQWQKMRKSLGDKRKKISAAQINHITKLYVDALEIAECTDHPDNGKIKIF 464 Query: 470 -YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 R FGYRRI V RPL++ F + + LA LE + +S + L+ + I+ Sbjct: 465 GTREFGYRRITVERPLKLRFEISEATLAALEEGKGLS--AWDGRSMAVLALRRSIGNIW- 521 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588 + E+ + +A +++ + AF A DP + T +GE + D +L Sbjct: 522 WTKKEAAEELRALIADADAEWPSKTQAMLKAFWRAVSVSDPAGEVQTSRDGEVLADPDLR 581 Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 +YENVP E I +YF REV+ HVPDA+ID+ E +VGYEI R FY Y P R Sbjct: 582 DYENVPLDEDIDEYFAREVTSHVPDAWIDR--------EKTKVGYEIPITRHFYAYTPPR 633 Query: 649 KLQDIDAELKGVEAQIATLLEEMA 672 L +IDAEL +E QI LL E+ Sbjct: 634 PLVEIDAELSELENQIQKLLSEVT 657 >gi|52426220|ref|YP_089357.1| HsdM protein [Mannheimia succiniciproducens MBEL55E] gi|52308272|gb|AAU38772.1| HsdM protein [Mannheimia succiniciproducens MBEL55E] Length = 732 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 232/752 (30%), Positives = 359/752 (47%), Gaps = 101/752 (13%) Query: 1 MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT +++++ IW A L G ++ + +V+LP +L R + L P A++ K Sbjct: 1 MTTDNLHTKQSTISSVIWSMANMLRGTYRPPQYRRVMLPLIVLARFDAILAPYTDAMKAK 60 Query: 59 YLAFGGSN--IDLESFVKVA---------GYSFYNTSEYSLSTL--GSTNTRNNLESYIA 105 + ++A YNTS Y+L L + NL Y+ Sbjct: 61 ADELQAMGGKAPEGALYEMALTKAADPNRKQPLYNTSGYNLQRLLADQDHIAANLVKYLQ 120 Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIY 159 FS AK IF+ F+F + I +L+ + LY + F +GI+L P ++ + M I+ Sbjct: 121 GFSAKAKDIFDKFEFENEIEKLDSSNRLYAVVSQFQKDLKENGIDLSPQSISNLQMGYIF 180 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E L+R+F + +E A D TPR+V++L L+ + D P I ++YDPT GTGG Sbjct: 181 EELVRKFNEQANEEAGDHFTPREVINLMVNLIFEEDQQRLS-QPHAIASIYDPTAGTGGM 239 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L+++ H+ K+ GQE E++A+C A +LI+ + N+ G Sbjct: 240 LSESEKHLKSYNDSIKLQ----LFGQEYNAESYAICCADLLIK-------DEPISNLVFG 288 Query: 280 STL-------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 TL D K+F Y SNPPFG +W+ ++D + E K+G GRFG Sbjct: 289 DTLGVKNSKNTGTGFVPHDGHQTKKFDYMFSNPPFGVEWKNEQDFINDEAKSGFAGRFGA 348 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 GLP+I+DGS+LFL H+ +K++ GG R A+V + SPLF G AGSGES IRRW++END Sbjct: 349 GLPRINDGSLLFLQHMISKMKPVEEGGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDW 408 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIN 445 +EAI+ALP LF+ T I TY+WI+SN+K++ R+GKVQLI+ T + + ++ G KR ++ Sbjct: 409 LEAIIALPDQLFYNTGIYTYVWIVSNKKSDRRKGKVQLIDGTQHYQKMAKSLGDKRNELS 468 Query: 446 DDQRRQILDIYVSRENGKF--------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 Q + +Y ++G S++ + + FGY ++ V RPLR++F + + + Sbjct: 469 PAQIADLTRLYADFKDGASGRISTKFCSKIFNNQDFGYLKLTVERPLRLNFQAGQERIEK 528 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSN 543 ++ + L+ + +K + I + + Sbjct: 529 VKTQTAFINLAVSKKRKDEAQIKAEEAEGQRQQQAILAALSTIGDGLYQNRTAFLKLLDK 588 Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI---- 599 K L K A I A +D AD D G D+ L + E VP + I Sbjct: 589 ALKGLDFKLGAPLKKAIIEALSERDQSADICLDSKGNPEADSQLRDTELVPLPKEITLPL 648 Query: 600 --------------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639 + Y EV PHV A+I D +VGYEI NR Sbjct: 649 PVDYGEGKTDELVKQVKAHCEAYLQAEVLPHVDHAWI--------DYSKTKVGYEIPINR 700 Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 FYQYQP R L +I AE+ +EA+I +L + Sbjct: 701 HFYQYQPPRALDEIKAEISELEAEIMAMLGNV 732 >gi|297581972|ref|ZP_06943892.1| type I restriction-modification system methyltransferase subunit [Vibrio cholerae RC385] gi|297533839|gb|EFH72680.1| type I restriction-modification system methyltransferase subunit [Vibrio cholerae RC385] Length = 660 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 346/676 (51%), Positives = 453/676 (67%), Gaps = 21/676 (3%) Query: 1 MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR VR+ Y Sbjct: 1 MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60 Query: 60 LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 LA S IDL + +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F Sbjct: 61 LAEKQSGIDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEF 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F TI LEKA LLY++ +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD V LAT L+L D+ +F E G+IRT+YDPTCGTGGFL+DA++ + + GS K+ Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 VP GQEL+P THA+ + M+IR +++ NI+QG+TLS D +FHY L+N Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG KWEK K VE+EH+ GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR Sbjct: 289 PPFGIKWEKAKKEVEREHQQLKYAGRFGPGLPSISDGSMLFLLHLVSKMEKPENGGGRVG 348 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEVR 408 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+ VQLIN D+WT +R +G KR+ ++D+Q I+ Y E ++ F +R Sbjct: 409 RKNLVQLINLVDIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFETSDNCKIFLTTDFAFR 468 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ + RPLR + G+A T++KL P Q+ W+ L + + PY WA Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVHHLTDNLG-LQPYEWA---- 523 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + ++K N K K SK+ A F + DP+ +P D G+ I D L + E++P+ Sbjct: 524 RLAVKKNNNKGNFGKCSKALATALTAHFLKVDPQFEPALDEKGQVIADPKLKDTESIPFD 583 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 ++DYF +EV PHVPDA+ID DEKD E+G VGYEINFNR+FYQY P R+L ID E Sbjct: 584 RDVEDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYAPPRELSVIDGE 643 Query: 657 LKGVEAQIATLLEEMA 672 LK EA+I LL E+A Sbjct: 644 LKACEARIQALLNEVA 659 >gi|21229083|ref|NP_635005.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] gi|20907637|gb|AAM32677.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] Length = 714 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 243/734 (33%), Positives = 362/734 (49%), Gaps = 85/734 (11%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M+E + + NFIW A+D L + + VILP T+LRRL+ LEPT+ AV + Sbjct: 1 MSEN--NLNWITNFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMK 58 Query: 60 LAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKA 113 A + I + + A +FYNTS+++L L + + E+Y+ FS N + Sbjct: 59 AALDSAGIANQDQPLRQAAEQAFYNTSKFTLRDLKSRSSQQQLKADFEAYLDDFSPNVQD 118 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNIY 159 I ++F+F + I RL KA L K+ + F S I L P+ + + M I+ Sbjct: 119 ILDNFEFRNQIPRLSKADALGKLIEKFLDSSINLSPNPVMNGNDSVKHYGLDNHAMGTIF 178 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E L+RRF E +E A + TPRD V L L+ P S LYD CGTGG Sbjct: 179 EELVRRFNEENNEEAGEHWTPRDAVKLMARLIFLPIADQIVSS---TYLLYDGACGTGGM 235 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 LT A + H +GQE+ ET+A+ A +L++ D + N+ G Sbjct: 236 LTVAEEELKQLAQDHGKQVATHLYGQEINAETYAIAKADLLLKG-----EGDAADNLVGG 290 Query: 280 ---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---GPGLP---- 329 STLS D F ++F + LSNPP+GK W+ D + + + + RF G P Sbjct: 291 PEYSTLSNDAFPARKFDFMLSNPPYGKSWKSDLERMGGK-DGIKDPRFTIEHAGDPEYSL 349 Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + SDG MLFL+++ +K++ G R A V + S LF G AG GES IRRW++END + Sbjct: 350 LTRSSDGQMLFLVNMLSKMKHDTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWL 409 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446 EAIVALP ++F+ T IATY+W+L NRK E R+GK+QLI+AT + +R N GKK + + Sbjct: 410 EAIVALPLNMFYNTGIATYIWVLGNRKPEHRKGKIQLIDATQWYRPLRKNLGKKNCELGE 469 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 + ++I D +++ E + S++ FGY ++ V RPLR++ L +A T Sbjct: 470 EDIQKICDTFLTFEESEQSKIFPNAAFGYWKVTVERPLRLAVDLTPDAIATFRKACT--- 526 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 + ++ Q+ P + A VK + + N+ R Sbjct: 527 --EAGEEQLAALVDKAAVQLGPGLHNDFNDFLPSFEALASKAGVKLTAKRLKLLQNSLSR 584 Query: 567 KDPRADPVTDV--------------------NG-----EWIPDTNLTEYENVPYLE--SI 599 KD A PV NG E+ PDT L + E VP LE I Sbjct: 585 KDESAAPVIKKVHKPGKAEADPMHGRFEATVNGKLCVVEYEPDTELRDTEQVPLLEEGGI 644 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 + + +REV PH DA+I D+ + GYEI+F R+FY+ QP R L++I A++ Sbjct: 645 EAFILREVLPHASDAWI--------DESSVKTGYEISFTRYFYKPQPLRSLEEIRADILA 696 Query: 660 VEAQIATLLEEMAT 673 +E + LL+E+ Sbjct: 697 LEKETEGLLDEIIG 710 >gi|221233593|ref|YP_002516029.1| type I restriction-modification system methylation subunit [Caulobacter crescentus NA1000] gi|220962765|gb|ACL94121.1| type I restriction-modification system methylation subunit [Caulobacter crescentus NA1000] Length = 630 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 261/674 (38%), Positives = 373/674 (55%), Gaps = 67/674 (9%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + SL+ FIW A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV ++ Sbjct: 19 SMNHQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAA 78 Query: 65 SNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 +D E F++ V+G FYNT + L+ + + N NL +Y+ +FS + IFE F+F Sbjct: 79 QGVDPEPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFH 138 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + I RL KAGLLY + + F+ I+LHP+ V + M ++E LIR+F +E A + TPR Sbjct: 139 AQIERLAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPR 198 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V+ L L+ DDA PG++RT+YDPT GTGG L+ A + K+ Sbjct: 199 EVIRLMVELIFVEDDAALS-EPGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAKL----S 253 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL PE++A+C A MLI+ D NI G+TLS D +F Y LSNPPF Sbjct: 254 MYGQELNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPF 306 Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G +W+K + V E + G GRFGPGLP++SDGS+LFL+HL +K+ +GG R IVL Sbjct: 307 GVEWKKVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVL 366 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + SPLF G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K RRG Sbjct: 367 NGSPLFTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRG 426 Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 K+QLI+A+ W +R G KR+ + +D I ++ + + + + D ++ Sbjct: 427 KLQLIDASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKVI 486 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 V + + KL+PL + +G+ V+ Sbjct: 487 VE----------AGSAPPVAPEGGKVKLAPLSKILPNSA----------FGYRTITVERP 526 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599 + K + + K G+ D+ + ENVP E + Sbjct: 527 LVDEAGKPVLGQKGK----------------------NKGKPQADSARRDTENVPLSEDV 564 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 + YF REV PH PDA+ID + GYEI FNR FY ++P R L IDA+L+ Sbjct: 565 ETYFAREVLPHAPDAWIDADK--------TKTGYEIPFNRHFYVFEPPRDLAQIDADLRA 616 Query: 660 VEAQIATLLEEMAT 673 V QI ++ E+A Sbjct: 617 VTDQIKAMIAELAA 630 >gi|194288965|ref|YP_002004872.1| type I restriction-modification methylase m subunit, n-6 DNA methylase [Cupriavidus taiwanensis LMG 19424] gi|193222800|emb|CAQ68803.1| type I restriction-modification methylase M subunit, N-6 DNA Methylase [Cupriavidus taiwanensis LMG 19424] Length = 612 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 265/672 (39%), Positives = 375/672 (55%), Gaps = 68/672 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +L++FIW A+ L G++K +++G+VILPFT+LRRL+C L T+ AV ++ A + Sbjct: 2 NHQALSSFIWSVADLLRGNYKQSEYGRVILPFTVLRRLDCVLAITKPAVLAEFEAKTQAG 61 Query: 67 IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 I+ + F+ + A SFYN S L L + R NL SY+ FS +A+ IFE FDF Sbjct: 62 INPDPFLQRKAKQSFYNVSPLDLVKLLGDQDHIRQNLYSYLQGFSASARDIFERFDFHMQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + RL KA LLY + + F+ I+LHPDTV + M ++E LIR+F +E A + TPR+V Sbjct: 122 VERLAKANLLYLVTEKFANIDLHPDTVDNAQMGLVFEELIRKFAEISNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L L+ D + ++RT+YDPT GTGG L+ A + + ++ + Sbjct: 182 IRLMVNLIFIEDSDVLTAGNAVVRTIYDPTAGTGGMLSVADEFLREHNPSARL----TMY 237 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL E++A+C A MLI+ + NI G+TLS D ++F Y LSNPPFG Sbjct: 238 GQELNDESYAICKADMLIKGQDV-------GNIVAGNTLSDDGHGARKFDYMLSNPPFGV 290 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + AV +EH+ G GRFGPGLP++SDGSMLFLMHL +K+ +GG R IVL+ Sbjct: 291 EWKKVEKAVRQEHEQRGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAADGGSRFGIVLNG 350 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K E+R+G V Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPEDRKGWV 410 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLI+A+ W +R G KR+ +ND+Q + ++ + + +LD R V Sbjct: 411 QLIDASSFWQKMRKSLGSKRKEMNDEQIAMVTRLFGDFVEAETATVLDADGKEVGRYVVA 470 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 T KL+P+ + F + +G+ V+ ++ Sbjct: 471 ----------ATAQPPEAPVGGRVKLAPISRIF----------RNEEFGYTTITVERPLR 510 Query: 542 SNEAKT-LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 + L VK + D++L + ENVP E I Sbjct: 511 DENGQLMLGVKGKQKGK-----------------------PQADSSLRDTENVPLDEEID 547 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 YFVREV PH PDA++D +VGYEI FNR FY ++P R L ID ELK V Sbjct: 548 AYFVREVLPHAPDAWVDDDKS--------KVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 599 Query: 661 EAQIATLLEEMA 672 I +LEE+A Sbjct: 600 SVNIMRMLEELA 611 >gi|326201378|ref|ZP_08191250.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782] gi|325988946|gb|EGD49770.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782] Length = 669 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 254/686 (37%), Positives = 373/686 (54%), Gaps = 37/686 (5%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + + NFIWK A+ L GD+K +++G V+LPFT+L RL+ L T+ V E Sbjct: 4 QNSLNINEYTNFIWKIADLLRGDYKQSEYGDVVLPFTVLCRLDSVLLATKDKVLEIDKTS 63 Query: 63 G-GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119 G + + F + G FYN S ++ L N NL YI SFS N + I E F+ Sbjct: 64 NFGDKVKEKLFEQATGMKFYNKSNFTFRKLKDDAPNIAENLRDYITSFSANVQEIMEAFN 123 Query: 120 FSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + I RL+KAGLLY I ++ I+L P+ VP+ +M I+E LIRRF +E A + Sbjct: 124 IYAQIERLDKAGLLYMIISKYADEIDLSPEKVPNDLMGYIFEELIRRFSEISNETAGEHF 183 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L +L+ + D A E G + +LYDP GTGG L +++ + Sbjct: 184 TPREVIRLMVSLIFNEDGAELSED-GKMTSLYDPAAGTGGMLAIGSDYLKSLNQTIYVDC 242 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 +GQEL P T+AVC + MLI+ + D I +G++ ++D GK F Y L N Sbjct: 243 ----YGQELNPMTYAVCKSDMLIKGQQYDR-------IYRGNSFTEDGTAGKTFSYMLCN 291 Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG +W+K A+++E+ K G GRFG GLP+ISDGS LFL H+ +K++ GG R A Sbjct: 292 PPFGVEWKKYDKAIKEENEKLGFAGRFGAGLPRISDGSFLFLQHMISKMKPVDEGGSRIA 351 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IV + SPLF G AGSGESEIRRW++END +E IVALP +F+ T I+TY+WI++NRK++ Sbjct: 352 IVFNGSPLFTGDAGSGESEIRRWIIENDWLETIVALPDQMFYNTGISTYIWIVTNRKSKL 411 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+GK+QLINA D +R G KR I D Q +I+ I+ ++S++ D FGY Sbjct: 412 RQGKIQLINAADFSEKMRKSLGSKRNQITDTQINEIVGIHKDFLPNEYSKIFDNEDFGYW 471 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ----------I 526 ++ V RP+R +F + + L +K S +PM Q + Sbjct: 472 KVTVERPVRYNFSCCEDRVYSLPIVFQKKKNCTWSWSQNDLDGQPMPQDLIDLKNDLVAL 531 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586 +++ +++ + K K+ A N +D D G + +T+ Sbjct: 532 GNEVYSDEKQFKALIAPVVKKHKLTAM-QQRTLLYNVLSAEDENGTIYLDAKGNQVANTS 590 Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 L +YE VP IQ+YF +EV PHVPDA+I D+ + GYEI F R FY+Y P Sbjct: 591 LRDYETVPLKTDIQEYFAQEVLPHVPDAWI--------DESKTKKGYEIPFTRQFYKYVP 642 Query: 647 SRKLQDIDAELKGVEAQIATLLEEMA 672 R I +E+K +E +I + ++ Sbjct: 643 LRASSVILSEIKALEDKIQADIADLF 668 >gi|260578141|ref|ZP_05846062.1| type I restriction-modification system, M subunit N-6 adenine-specific DNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258603780|gb|EEW17036.1| type I restriction-modification system, M subunit N-6 adenine-specific DNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 689 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 240/697 (34%), Positives = 363/697 (52%), Gaps = 46/697 (6%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 T S + IW AE L GD+K ++G V+LPFT+L RL+ L T+ AV + Sbjct: 9 TEKPTSHVSLIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKATSVP 68 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + I + K GY F+NTS ++L TL + N NL Y+ +F+ A+ + E ++F + Sbjct: 69 NKIKELRYAKETGYPFWNTSNFTLKTLLDDADNLEQNLTYYVQAFAPAAREVMEAYNFYN 128 Query: 123 TIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 I RL+K+ LLY + K F+ + LHPD V + M I+E LIRRF +E A + TP Sbjct: 129 VIERLDKSDLLYHVLKEFTSAKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTP 188 Query: 181 RDVVHLATALLLDPDDALFKE-SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 R+V+ L LL +P++ + + + G + +LYDP GTGG L+ A HV D ++ Sbjct: 189 REVISLMVNLLFNPEEDINRLCADGAMASLYDPGVGTGGMLSTAAQHVNDLNESARLE-- 246 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +GQEL P+T+AV + ++I+ + + I G++L+ D G RF Y L NP Sbjct: 247 --VYGQELNPQTYAVAKSDIMIKG-------ERQERIYFGNSLTNDKTAGMRFDYMLCNP 297 Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPN------G 352 PFG W+K D + E + G GRFG G P++SDGS LFL H+ +K++ Sbjct: 298 PFGVNWKKYADPILDEAEHKGYQGRFGAGTPRVSDGSFLFLQHMISKMKPYDPMDLVNAA 357 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R IV + SPLF G AG GESEIRRW+LEND +EAI+ALP +F+ T I TY+W+LSN Sbjct: 358 GTRIGIVFNGSPLFTGGAGQGESEIRRWILENDWLEAIIALPDQMFYNTGILTYIWVLSN 417 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 +K R+ KVQLI+AT + +R G+KR+ + + I IY + + + SR+ + Sbjct: 418 KKERHRKNKVQLIDATQYFQRMRKPLGEKRKELTETNIADITRIYGAFQETEESRIFETE 477 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS--------------PLHQSFWLD 517 F Y + V RPLR+SF + L+ + L+ + Sbjct: 478 DFAYHEVVVERPLRLSFQATPDAIESLKQTKPFTDLAMSRKRTEPARTEEIDAGKRVQNA 537 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 I+ + + + K K + + + G K+P AD D Sbjct: 538 IIATLEALDAERVYLNRDEFTDLIRESIKKRGEKIGIAALRKIVAGLGTKNPDADICMDT 597 Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 G PD +L + E +P+ E I+ YF REV P+ PDA+ID ++GYEI F Sbjct: 598 KGNPEPDADLRDTEQIPFREDIEAYFQREVIPYAPDAWIDHDK--------TKIGYEIPF 649 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 R+FY+Y+ + AE++ + A I + ++ +E Sbjct: 650 TRYFYKYEELGNPVETLAEIQTLSASIQADITKLFSE 686 >gi|16124873|ref|NP_419437.1| type I restriction-modification system, M subunit [Caulobacter crescentus CB15] gi|13421829|gb|AAK22605.1| type I restriction-modification system, M subunit, putative [Caulobacter crescentus CB15] Length = 611 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 261/672 (38%), Positives = 372/672 (55%), Gaps = 67/672 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + SL+ FIW A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV ++ Sbjct: 2 NHQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAAQG 61 Query: 67 IDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 +D E F++ V+G FYNT + L+ + + N NL +Y+ +FS + IFE F+F + Sbjct: 62 VDPEPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFHAQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I RL KAGLLY + + F+ I+LHP+ V + M ++E LIR+F +E A + TPR+V Sbjct: 122 IERLAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L L+ DDA PG++RT+YDPT GTGG L+ A + K+ + Sbjct: 182 IRLMVELIFVEDDAALS-EPGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAKL----SMY 236 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL PE++A+C A MLI+ D NI G+TLS D +F Y LSNPPFG Sbjct: 237 GQELNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPFGV 289 Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + V E + G GRFGPGLP++SDGS+LFL+HL +K+ +GG R IVL+ Sbjct: 290 EWKKVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVLNG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K RRGK+ Sbjct: 350 SPLFTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRGKL 409 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 QLI+A+ W +R G KR+ + +D I ++ + + + + D ++ V Sbjct: 410 QLIDASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKVIVE 469 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + + KL+PL + +G+ V+ + Sbjct: 470 ----------AGSAPPVAPEGGKVKLAPLSKILPNSA----------FGYRTITVERPLV 509 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601 K + + K G+ D+ + ENVP E ++ Sbjct: 510 DEAGKPVLGQKGK----------------------NKGKPQADSARRDTENVPLSEDVET 547 Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661 YF REV PH PDA+ID + GYEI FNR FY ++P R L IDA+L+ V Sbjct: 548 YFAREVLPHAPDAWIDADK--------TKTGYEIPFNRHFYVFEPPRDLAQIDADLRAVT 599 Query: 662 AQIATLLEEMAT 673 QI ++ E+A Sbjct: 600 DQIKAMIAELAA 611 >gi|254383776|ref|ZP_04999124.1| type I restriction-modification system methyltransferase subunit [Streptomyces sp. Mg1] gi|194342669|gb|EDX23635.1| type I restriction-modification system methyltransferase subunit [Streptomyces sp. Mg1] Length = 632 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 257/657 (39%), Positives = 375/657 (57%), Gaps = 50/657 (7%) Query: 41 LRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTR 97 LRRLEC LEPTR V E F G ID + F++ +G+SFYN S+ +L + N Sbjct: 2 LRRLECVLEPTREKVAETVDRFAGQEIDTDHFLRKASGHSFYNKSDLTLKKIAADPQNAA 61 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 NL+ Y+ +FSDNA+ + + ++F+ + +L+ A LLY++ F+ ++LHPD VP+ M Sbjct: 62 KNLQIYVGAFSDNAREVLDKYEFNQQVRKLDSANLLYQVIGRFTDLDLHPDVVPNHNMGY 121 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 I+E LIRRF + +E A + TPR+V+ L LL+ PD PG++RT+ DP CGTG Sbjct: 122 IFEELIRRFAEQSNETAGEHFTPREVIKLMVNLLVAPDADALSL-PGVVRTVMDPACGTG 180 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 G L+ A +H+ + +GQEL PE+ A+C + ++I+ + +NI+ Sbjct: 181 GMLSAAEDHILALNPDATVE----VYGQELNPESWAICRSDLMIKGQDP-------ENIR 229 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSM 336 G++ S D ++F Y L+NPPFG +W+K K+ VE EHK G+ GRFG GLP+I+DGS+ Sbjct: 230 FGNSFSDDGHARRKFDYILANPPFGVEWKKVKEEVEYEHKSLGDAGRFGAGLPRINDGSL 289 Query: 337 LFLMHLANKLEL---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL H+ +K++ GG R AIV + SPLF G A SGES IRRW+LEND +EAIVAL Sbjct: 290 LFLQHMISKMKPVDVSGGGGSRIAIVFNGSPLFTGAAESGESNIRRWILENDWLEAIVAL 349 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIND------ 446 P LF+ T I+TY WIL+NRK + +GKV L++A D W +R G KR+ + D Sbjct: 350 PDQLFYNTGISTYFWILTNRKDADHKGKVVLLDARDQWQKMRKSLGDKRKELGDGTRGRP 409 Query: 447 DQRRQILDIYVS----RENGKF-----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 D I +Y ++ + ++ + FGY+RI V RPL++ F + + LA Sbjct: 410 DHIGDITRLYAEAAQVAKDPEHPLHGKVKVFANQDFGYQRITVERPLKLRFEVTEETLAA 469 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA-KTLKVKASKSF 556 L KL ++ ++ ++ +P +S ++K L + F Sbjct: 470 LAEAKPVAKLE--RNEEFVAAVRTLLGSSWP---TKSDAFIALKDAVVSAGLTWPSGAPF 524 Query: 557 IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYI 616 + A G +DP + V V G PD +L +YENVP E ++DY REV PHVP+A+I Sbjct: 525 VKAVRETIGVRDPEGE-VQKVKGAAEPDGDLRDYENVPLGEDVEDYLKREVLPHVPNAWI 583 Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 D ++GYEI F R FY Y+P R L +IDAELK +EA+I LL E+ Sbjct: 584 DHTK--------TKIGYEIPFTRHFYVYKPPRPLAEIDAELKSLEAEIQALLGEVTA 632 >gi|315180943|gb|ADT87857.1| type I restriction-modification system, M subunit/N-6 Adenine-specific DNA methylase [Vibrio furnissii NCTC 11218] Length = 789 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 285/801 (35%), Positives = 393/801 (49%), Gaps = 144/801 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + A FIW A+ L GDFK + +G+VILPFTLLRRLEC LEP++ ++ + Sbjct: 1 MTNNN--FSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKESLLAEIP 58 Query: 61 AFG--------------GSNIDLESFVKV--------AGYSFYNTSEYSLSTLGSTNTRN 98 N + ++ SF+NTS +L +G +N + Sbjct: 59 KVEALNEKLVSSGKDPLDENQREKMLLRATFEAKDSTKNLSFFNTSPMNLGKMGQSNIKA 118 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 NLE Y+ SFS +A+ IFE F F + LE A LLYK+ K F+ +L P + + M + Sbjct: 119 NLEKYVQSFSKDAREIFEHFKFDEFVGLLEDANLLYKVVKKFATTDLSPSNISNYEMGLV 178 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E LIRRF +E A + TPRD+V L T+L+ DD G+IRT+YDPT GTGG Sbjct: 179 FEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDDEALT-KEGIIRTIYDPTAGTGG 237 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 FL+ M +V + ++ GQEL PE++A+C A MLI+ + I+ Sbjct: 238 FLSSGMEYVYELNPKA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKL 286 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSML 337 G+TLS D +F Y LSNPPFG W+K + ++ EH+ G GRFG GLP++SDGS+L Sbjct: 287 GNTLSNDQLPADQFDYMLSNPPFGVDWKKIEGEIKDEHEQKGFDGRFGAGLPRVSDGSLL 346 Query: 338 FLMHLANKLELPPN-----------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 FLMHL +K+ GGR I+L+ SPLF G AGSGESEIRR++LE DL Sbjct: 347 FLMHLISKMRPISPIKDKNVDNQVTDGGRIGIILNGSPLFTGSAGSGESEIRRYILEADL 406 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIN 445 ++AIVALP D+F+ T IATY+W+LSN+K ER+GKVQLIN +L + +R G KR + Sbjct: 407 LDAIVALPNDMFYNTGIATYVWVLSNKKAPERKGKVQLINGANLGSKMRKSLGSKRHFLT 466 Query: 446 DDQRRQILDIYVSRENGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILD 491 DD+ R I + S++ D FGYRR+ + RPLR+S + Sbjct: 467 DDEIRAITKNFGEFAEVDTATSLKESESGKPFASKIFDTHEFGYRRLTIERPLRLSAQIT 526 Query: 492 KTGLARLEA--------------------------------------------DITWRKL 507 + L ++ +++ Sbjct: 527 DAAVESLRFAPKPFNGVMQAVYEQFGTEWDDKTYGTLIEAEAEVRALIKADFPELKEKQI 586 Query: 508 SP-------LHQSFWLDILKPMMQQIYPYG------WAESFVKESIKSNEAKTLKVKASK 554 L Q +D K + + + E K +K Sbjct: 587 KEVLDSKLWLSQKALMDDAKALQAAVGDKLGGKTQQSDDFNQFELTLKGAFKATGIKFDV 646 Query: 555 SFIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL 596 F +A K+ A+PV G E+ D +L + ENVP Sbjct: 647 KQKKQFTDAVTWKNQDAEPVIKKVLKEEAQPLYGAFAYKGKVVEFQQDGDLRDNENVPLD 706 Query: 597 ES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650 S I+ YF REV PHV DA+I+ D+KD EIG VGYEI FNR FY YQP R L Sbjct: 707 PSVSTSTLIESYFKREVQPHVADAWINADKRDDKDNEIGVVGYEIPFNRHFYVYQPPRAL 766 Query: 651 QDIDAELKGVEAQIATLLEEM 671 + IDA+L V A I LL+E+ Sbjct: 767 EAIDADLDAVSADIMKLLQEV 787 >gi|229819987|ref|YP_002881513.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333] gi|229565900|gb|ACQ79751.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333] Length = 661 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 253/691 (36%), Positives = 356/691 (51%), Gaps = 55/691 (7%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + L++F+W A+ L G FK +G V+LPFT+LRRLE + P R A+ + + Sbjct: 1 MSQLSSFVWSIADLLRGPFKPHQYGTVVLPFTILRRLEGVMAPHREAMVTAVAKADDATM 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + G FY TS Y+L+T N NL Y+ FS +F+ FDF + I Sbjct: 61 RRALVRRATGLPFYTTSSYTLATALEDPDNLAANLVDYVNGFSAEV-DVFKHFDFEARIH 119 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L+ A L + + F+ ++L D V + M +++EHLI + + A DF TPRD + Sbjct: 120 QLDAADRLIPVTQGFARVDLSTDHVSNAGMGDLFEHLIFKDFEASNAEAGDFYTPRDAIR 179 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L L+ D + +PG+ R++YDP GTGG L+ A H+ + + Q Sbjct: 180 LLVDLVFAEDTSALA-APGITRSVYDPAAGTGGMLSVAEEHLHELNPKANL----ALFAQ 234 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E+ P ++A+ + MLI+ +N++ G TL++DLF G+ F + LSNPP+G W Sbjct: 235 EINPASYAIAKSDMLIKGQNI-------ENVRLGDTLAEDLFDGETFDFALSNPPYGVDW 287 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--GGGRAAIVLSSS 363 + + AV EH G GRF PGLP + DGSMLFL+HL K+ GGR IVL+ S Sbjct: 288 KAAEKAVRAEHVRGTGGRFAPGLPSVGDGSMLFLLHLVAKMRPVDARGNGGRGGIVLNGS 347 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 PLFNG AGSG SEIR LLE+DL++AIVALP D+F+ T IATYLWIL N K ERR KVQ Sbjct: 348 PLFNGGAGSGPSEIRGHLLEHDLVDAIVALPNDMFYNTGIATYLWILDNSKQPERRRKVQ 407 Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE--------NGKFSRMLDYRTFG 474 LI+AT L T +R G KR I+ R +I+ Y + +G S++ D F Sbjct: 408 LIDATKLGTKMRKSLGSKRVEISTADRGRIVQAYDRFDGVAADGDASGPRSKVFDTLDFA 467 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 Y + V RPLR++F + L + A K ++ L ++ + Sbjct: 468 YWSVTVERPLRLNFQVTPERLENVMASKPLSK---------VEGLVGVLSAFGDELYLNR 518 Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP 594 +V + A A G +D AD TD G PDT L + E VP Sbjct: 519 DEFMGRLGTHLGAHRVGLTTPQRKALWQALGERDETADTCTDSKGRPEPDTGLRDTEIVP 578 Query: 595 YL------------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642 + ++IQ YF EV+PHVPDA+ID RVGYEI F R FY Sbjct: 579 FGWSDHPKADDAERDTIQAYFDAEVAPHVPDAWIDWTK--------TRVGYEIPFTRHFY 630 Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +Y P R L +IDA+L+ ++I LL E+ Sbjct: 631 EYVPPRPLAEIDADLEASVSRILDLLREVEA 661 >gi|304315217|ref|YP_003850364.1| type I restriction-modification enzyme, subunit M [Methanothermobacter marburgensis str. Marburg] gi|302588676|gb|ADL59051.1| predicted type I restriction-modification enzyme, subunit M [Methanothermobacter marburgensis str. Marburg] Length = 671 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 254/692 (36%), Positives = 389/692 (56%), Gaps = 53/692 (7%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +FIW A+ L +K ++ KVILPFT+L+R +C LE ++ V KY + Sbjct: 2 ENHQDIVSFIWDIADLLRDTYKRNEYQKVILPFTVLKRFDCVLEHSKDDVLRKYNEYKDK 61 Query: 66 NIDLESFVKVA-------GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 +L+ ++ A FYN S+Y +L + NL Y+ FS N K IFE Sbjct: 62 IENLDPILEAAAVDKDGRKLGFYNYSKYDFKSLLEDPDHIEENLMHYLDCFSPNVKDIFE 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +F + I +L KA LLY + K FS ++LHPD + + M I+E LIRRF + +E A Sbjct: 122 NFYIKTHIEKLSKANLLYLLIKKFSESKVDLHPDKISNHDMGIIFEELIRRFSEQSNEEA 181 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 TPRDVV L T LL + KE +I+ +YDP CGTGG LT N V + Sbjct: 182 GQHFTPRDVVKLMTHLLFLENGENLKEK-NLIKKIYDPACGTGGMLTSCKNFVREINDTI 240 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFH 293 + V +GQE+ E +A+C A MLI+ + ++NI+ STLS D ++F Sbjct: 241 DV----VLYGQEINEEIYAICKADMLIKG-------ERAENIKGPSSTLSDDQLKDEKFD 289 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + +SNPP+G+KWE+DK+ VEKE + G GRFG GLP I DG +LF+ H+ +K++ Sbjct: 290 FMISNPPYGRKWEQDKEVVEKEAELGFDGRFGAGLPGIKDGQLLFIQHMLSKMKDDEK-- 347 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 R A++ + SPLF G AGSGES IRRW++END +E I+ LP LF+ T+I TY+WIL+N+ Sbjct: 348 SRIAVITNGSPLFTGDAGSGESNIRRWIIENDYLETIIGLPDQLFYNTSIRTYIWILTNQ 407 Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K+ +R GK+QLI+A+ + +R GKKR ++D IL Y + ++ D Sbjct: 408 KSPDRIGKIQLIDASSKYVKMRKSLGKKRHQLSDRDIDDILTFYRNFSENDMVKIFDNDD 467 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDI 518 FGY ++ V RP++++F + + L L + +RKL+ + LDI Sbjct: 468 FGYVKVTVERPMQLNFEVTEERLQNLYSMNAFRKLAESKNKNIEKRMIEEEKGKKLQLDI 527 Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578 ++ + + Y + F KE ++ + + S +FI I+A D AD VTD Sbjct: 528 IRALQKINGHYKNWKDFEKEVKRTLK----NFELSNAFIRNIIHALSEHDETADYVTDTR 583 Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638 G PD L + E +P E I +YF REV P+ PDA++D+ + ++GYEINFN Sbjct: 584 GNIKPDPKLRDTERIPLKEDIDEYFKREVLPYYPDAWMDR--------KKDKIGYEINFN 635 Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670 ++FY+Y+P R L+DI+++++ + ++I L+++ Sbjct: 636 QYFYKYKPPRSLEDINSDIQKLTSEILELIKD 667 >gi|302037227|ref|YP_003797549.1| putative type I restriction system, N-6 adenine-specific DNA methylase HsdM [Candidatus Nitrospira defluvii] gi|300605291|emb|CBK41624.1| putative Type I restriction system, N-6 adenine-specific DNA methylase HsdM [Candidatus Nitrospira defluvii] Length = 714 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 232/734 (31%), Positives = 356/734 (48%), Gaps = 85/734 (11%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M+ G +ANFIW A+D L + + VILP T+LRRL+ LEPT+ AV + Sbjct: 1 MSN--GDLNWIANFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMK 58 Query: 60 LAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKA 113 ++ + I ++ + AG +FYNTS+++L L R + E+Y+ FS N + Sbjct: 59 VSLDKAKIVHQDQALRQAAGQAFYNTSKFTLKDLKARSSQQQLRADFEAYLDGFSPNVQD 118 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIY 159 I E F+F + I RL KA L + F +++ + + M ++ Sbjct: 119 ILEKFEFRNQIPRLSKADALGTLINKFLSPDINLSPNPVKNNDGSMKHPGLDNHAMGTVF 178 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E L+RRF E +E A + TPRD V L L+ P + LYD CGTGG Sbjct: 179 EELVRRFNEENNEEAGEHWTPRDAVKLMARLIFLPIADQIQSG---TYLLYDGACGTGGM 235 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 LT A + + H+ +GQE+ ET+A+ A +L++ D + NI G Sbjct: 236 LTVAEETLQQLAAEHRKKVATHLYGQEINAETYAIAKADLLLKG-----EGDAADNIVGG 290 Query: 280 ---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---GPG------ 327 STL+ D F + F + LSNPP+GK W+ D + + + + + RF G Sbjct: 291 PEYSTLANDAFRSREFDFMLSNPPYGKSWKSDLERLGGK-EGIKDPRFMIQHAGEAEYSL 349 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + + SDG MLFL ++ +K++ G R A V + S LF G AG GES IRRW++END + Sbjct: 350 ITRSSDGQMLFLANMLSKMKHKTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWL 409 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446 EAIVALP ++F+ T IATY+W+L+NRK R+GKVQLI+AT + +R N GKK ++D Sbjct: 410 EAIVALPLNMFYNTGIATYIWVLTNRKPAHRQGKVQLIDATQWFKPLRKNLGKKNCELSD 469 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 + R+I D ++ + + S++ FGY ++ V RPLR+ LD L+ A Sbjct: 470 EDIRRICDTFIDFKESEQSKIFPNEAFGYWKVTVERPLRLRVDLDPKSLSAFRAACV--- 526 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 + ++++ + + P +A VK + + + + Sbjct: 527 --DEDEEPLANVVERVAASLGPGPHLSFNTFMEAVEADANEHGVKLTAARKKLLKDRLAK 584 Query: 567 KDPRADPVTDVN-------------------------GEWIPDTNLTEYENVPYLE--SI 599 +D +A + E+ PDT L + E +P LE I Sbjct: 585 RDEKAAEIIGKTYKPGKVKPDPLRGLFEATVDGKPCVVEYEPDTELRDTEQIPLLEEGGI 644 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 + REV PHVPDA+ E + GYEI+F R+FY+ QP R L+ I A++ Sbjct: 645 AAFIRREVLPHVPDAWYVP--------ESVKTGYEISFTRYFYKPQPLRSLEAIRADILA 696 Query: 660 VEAQIATLLEEMAT 673 +E + LL E+ Sbjct: 697 LEKETEGLLGEIIG 710 >gi|326387107|ref|ZP_08208717.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370] gi|326208288|gb|EGD59095.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370] Length = 594 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 261/660 (39%), Positives = 367/660 (55%), Gaps = 70/660 (10%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77 A+ L GD++ +++G+VILPFT+LRRL+C L PT+ AV ++ A ++ AG Sbjct: 1 MADLLRGDYRQSEYGRVILPFTVLRRLDCVLAPTKDAVLKEAEA----GRPDPFLIRAAG 56 Query: 78 YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135 F+N S L+ L N NL SYI FS + IFE F+F++ I RL K GLLY+ Sbjct: 57 MQFFNRSPLDLAKLIGDQDNIGTNLLSYIQGFSAEVRDIFEQFEFAAQIDRLAKNGLLYQ 116 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + F+GI+LHP V + M +E LIR+F +E A + TPR+V+ L L+ D Sbjct: 117 VTERFAGIDLHPARVDNAQMGLAFEELIRKFAEISNETAGEHFTPREVIRLMVNLIFVED 176 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 D + P ++R++YDPT GTGG L+ A ++ + L GQEL PE++A+C Sbjct: 177 DEVLT-KPSVVRSIYDPTAGTGGMLSIAEEYLREHNPTA----QLTMWGQELNPESYAIC 231 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 A MLI+ + I QG+TLS D RF Y LSNPPFG +W+K + V+ E Sbjct: 232 KADMLIKGQDI-------TKIVQGNTLSNDGHPTARFDYMLSNPPFGVEWKKVQKEVQDE 284 Query: 316 H-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 H + G GRFGPGLP++SDGS+LFLMHL +K+ GG R IVL+ SPLF G AGSGE Sbjct: 285 HLRQGFNGRFGPGLPRVSDGSLLFLMHLLSKMRPWTEGGCRFGIVLNGSPLFTGGAGSGE 344 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 SEIRR++LENDL+EAI+ALPTD+F+ T IATY+WILSN+K + R GKVQLI+A+ W + Sbjct: 345 SEIRRYVLENDLVEAIIALPTDMFYNTGIATYVWILSNKKPQARTGKVQLIDASSFWQKM 404 Query: 435 RN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 R G KR+ + + + ++ S + + +LD R V+ Sbjct: 405 RKSLGSKRKEMGEAHIEDVTRLFGSFVEAQLATVLDASGKEVSRQIVI----------AG 454 Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 A + KL+PL + F +G+ V+ ++ K + + Sbjct: 455 EAAPEAPEGGKVKLAPLSRIFPTQA----------FGYRTITVERPLRDEAGKPVLGQKG 504 Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613 K+ G+ PD+ L + ENVP E I+ YF REV PH PD Sbjct: 505 KA----------------------KGKMQPDSALRDTENVPLSEDIETYFEREVKPHAPD 542 Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 A+I D+ +VGYEI FNR FY ++P R+L +IDAEL GV A+I +L E+A Sbjct: 543 AWI--------DETKTKVGYEIPFNRHFYVFEPPRRLSEIDAELAGVTARIQVMLAELAA 594 >gi|329115022|ref|ZP_08243777.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter pomorum DM001] gi|326695465|gb|EGE47151.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter pomorum DM001] Length = 615 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 258/681 (37%), Positives = 373/681 (54%), Gaps = 76/681 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ +A+ L++ IW+ A+ L GDFK ++G+VILPFT+LRRL+ L PTR V ++ Sbjct: 1 MSTTPRTAS-LSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKE 59 Query: 61 AFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 + ID K AG F NTS+++L ++ N NL +YI +FS A+ IF+ Sbjct: 60 KWESKGIDPMSFMEKAAGLRFVNTSDFTLKSVLGDPDNLTQNLSAYINAFSPAARDIFDH 119 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F F+ RL KA LLY + + F +L V + M ++E LIR+F +E A + Sbjct: 120 FRFTEQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEH 179 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L L+ DD L +RT+YDPT GTGG L+ A + D ++ Sbjct: 180 FTPREVIKLMVNLIFAEDDGLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDARL- 238 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQEL PE++A+C A MLIR + NI+ G+TLS D +F Y LS Sbjct: 239 ---TMFGQELNPESYAICKADMLIRNQDV-------SNIRLGNTLSDDELADYKFDYMLS 288 Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPPFG +W+K + V EH K G GRFGPGLP+ISDGSMLFL+HL +K+ +GG R Sbjct: 289 NPPFGVEWKKVEKTVRAEHEKLGYNGRFGPGLPRISDGSMLFLLHLVHKMRPTKDGGSRF 348 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 IVL+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+FF T IATY+W+L+NRK + Sbjct: 349 GIVLNGSPLFTGAAGSGESEIRRFVLEDDLVEAIIALPTDMFFNTGIATYVWVLTNRKPK 408 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 R+GKVQLI+A+ W +R G KR+ + +D + ++ + + + + Sbjct: 409 NRKGKVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITGANGTQT 468 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 + + + + +L+PL + F +G+ Sbjct: 469 CAV-----------VTQGETPPEAPEGGKVRLAPLSRIF----------NNKDFGYQTIT 507 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGEWIPDTNLTEYE 591 V+ ++D + V + G+ +PDT+L + E Sbjct: 508 VERP--------------------------QRDEDGNIVLGQRGKMKGKKMPDTSLRDTE 541 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 NVP E I YF REV PH PDA+ID+ ++GYEI FNR+FY ++P R L+ Sbjct: 542 NVPLNEDIHAYFKREVLPHAPDAWIDEDK--------TKIGYEIPFNRYFYVFEPPRPLE 593 Query: 652 DIDAELKGVEAQIATLLEEMA 672 +IDA+LK V A+I +LEE++ Sbjct: 594 EIDADLKEVTAKIMAMLEELS 614 >gi|310639247|ref|YP_003944006.1| type I restriction-modification system methyltransferase subunit [Ketogulonicigenium vulgare Y25] gi|308752823|gb|ADO43967.1| type I restriction-modification system methyltransferase subunit [Ketogulonicigenium vulgare Y25] Length = 667 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 233/692 (33%), Positives = 369/692 (53%), Gaps = 52/692 (7%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + LAN IW+ A+ L G ++ + +V+LP +LRR +C L T+ V ++ G Sbjct: 2 ATHSDLANLIWQIADLLRGPYRPPQYERVMLPLVVLRRFDCVLADTKQKVLAEFERRKGG 61 Query: 66 NIDLESF----VKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119 ++ ++ K +G+ F+N S + T+ + +L+SYI+ FS N + IFE F+ Sbjct: 62 KLEDDALDRMLNKASGHRFHNRSSMTFETMIGDTSDLVGHLQSYISGFSANVRRIFEYFE 121 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F++ I ++ +A +LY + K F ++LHPD V + M ++E+LIRRF +E A D T Sbjct: 122 FTNEIEKMNEANILYLVLKEFLKVDLHPDRVKNDQMGLVFENLIRRFNELANETAGDHFT 181 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+V+HL LL D + PG + + DP CGTGG L +A ++ D K+ Sbjct: 182 PREVIHLMVDLLFMDADDVLS-KPGTVMRMLDPACGTGGMLAEAQRYMRDHHKEAKL--- 237 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +GQ+ A + ML+++++ + +N+Q G + + D F G+ F Y ++NP Sbjct: 238 -YVYGQDYNKRAFATAASDMLMKQVDHNGGG---ENVQFGDSFTDDKFEGQTFDYFIANP 293 Query: 300 PFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GG 354 PFG W+K + + + H+ + GLP+++DGS+LFL H+ +K + G Sbjct: 294 PFGVDWKKQQKEIVRRHEKAPQDSPWSAGLPRVNDGSLLFLQHMISKFDDVDPKAQKYGS 353 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAAIV S SPLF G AG GES IR+W++E D++EAIVALP +F+ T I TY+WI++N K Sbjct: 354 RAAIVFSGSPLFTGGAGGGESNIRKWIIERDMLEAIVALPEQMFYNTGIGTYIWIVTNNK 413 Query: 415 TEERRGKVQLINATDLWTSI-RNEGKKRRII-------------NDDQRRQILDIYVSRE 460 R+G +QL++A D++ + R++G KRR I DQ +I+ +Y S Sbjct: 414 PSHRKGDIQLVDARDIYMPMGRSQGDKRRKIGAGKAPEGDDRPDEPDQIAEIVRLYGSFA 473 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 S++ D FGY R+ + RPLR+ + + AR LD ++ Sbjct: 474 PNSKSKIFDNAEFGYTRVTIERPLRLRYRMTVEDKARFLDAAPH----------LLDDIQ 523 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580 + + + + K + + + F N F KD +A+ V G Sbjct: 524 AIDKALGREMELDWNKVWGSIEKLLKKRESRWRAPEVKLFRNVFTVKDAKAERVKSGKG- 582 Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 + D +L ++EN+P E + YF REV PHVPDA++D+ +VGYEINFNR Sbjct: 583 FEADPDLRDFENIPLKEDVDAYFAREVLPHVPDAWMDRSKD--------KVGYEINFNRH 634 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 FYQ+ RKL +IDA+LK E +I LL E+ Sbjct: 635 FYQFTTPRKLVEIDADLKKAEDEILRLLREVT 666 >gi|119491620|ref|ZP_01623492.1| type I restriction-modification system methyltransferase subunit [Lyngbya sp. PCC 8106] gi|119453349|gb|EAW34513.1| type I restriction-modification system methyltransferase subunit [Lyngbya sp. PCC 8106] Length = 694 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 258/690 (37%), Positives = 375/690 (54%), Gaps = 56/690 (8%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ F + A+FIWK A+ L G+++ ++ VILP +LRRL+ A+E TR AVR+++ Sbjct: 1 MSNFQAT----ADFIWKIADLLRGNYQRREYPDVILPMVVLRRLDQAMENTRQAVRDEWN 56 Query: 61 AFGGSNIDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFE 116 + G +L+ ++ A YNTSEY L N NL +Y+ FS + I E Sbjct: 57 KYHGKLENLDPLLRAAAGDSPVYNTSEYYWRRLLDDRPNLAQNLINYLNGFSPDVLDIIE 116 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYEHLIRRFGSEVS 171 FDF ++RL A LL + F+ I+LHP V + M I+EHLI RF + + Sbjct: 117 KFDFRRQVSRLNTANLLPILFDEFTKIDLHPPREDGTGVDNLEMGRIFEHLIYRFNQDNN 176 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 E A + TPR+V+ L LL DD P I T+YDP CGTGG LT+A ++ D Sbjct: 177 ETAGEHFTPREVIRLMVRLLFPEDDPTL--HPDNILTIYDPACGTGGMLTEAKEYIHDIQ 234 Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 ++ + GQE+ P AV + L++ + I G++ S+D + + Sbjct: 235 TRKYQKIGQVHLFGQEINPTAFAVAKSDFLLKGEDPRR-------ITFGNSFSEDGYPER 287 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 RF Y LSNPPFG W+K + +++E++ G GRFG GLP+I+DGS+LFL H+ + + Sbjct: 288 RFRYMLSNPPFGVDWKKVQYIIKREYETQGFDGRFGAGLPRINDGSLLFLQHILS--KRA 345 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 R IV + SPLF G AGSGES IRRW++END +E IVALP LF+ T I+TYLW+ Sbjct: 346 KEEPSRTVIVFNGSPLFTGDAGSGESNIRRWIIENDWLEGIVALPDQLFYNTGISTYLWV 405 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 L+NRK+ +R+GK+QL+NA + + +R G KR I ++Q +I +IY + G + Sbjct: 406 LNNRKSNKRKGKIQLVNAVNFYQKMRKSLGNKRNEITEEQYNEIANIYHAFSTGDNCLIF 465 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF-------------W 515 D FGYRRIKV RPLR++F LARL + L+ + W Sbjct: 466 DNEDFGYRRIKVERPLRLNFSAAPERLARLPEQSGFAALAESKKKKEEDQKADIEAGKDW 525 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 + + ++Q+ + + K K +S A + A +D A+PV Sbjct: 526 QERIINALKQLPVKVTTDPKQFLPLLDKTLKP--FKLKESVKNAILKALTERDENAEPVP 583 Query: 576 DVNGE-WIPDTNLTEYENVPY-------------LESIQDYFVREVSPHVPDAYIDKIFI 621 GE + PD L +YENVP E++ DYF REV P++ DA+ID+ F Sbjct: 584 AKKGEGYEPDPELRDYENVPLQWAPSIYDENVPLKENVYDYFAREVKPYISDAWIDEKFK 643 Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 DEKD + G +GYEI+FNR+FY+YQP L+ Sbjct: 644 DEKDGKTGLIGYEISFNRYFYKYQPPEPLE 673 >gi|189425260|ref|YP_001952437.1| N-6 DNA methylase [Geobacter lovleyi SZ] gi|189421519|gb|ACD95917.1| N-6 DNA methylase [Geobacter lovleyi SZ] Length = 778 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 231/789 (29%), Positives = 355/789 (44%), Gaps = 137/789 (17%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +FIW A+D L FK + VILP +LRRL+ LEPT+ AV + Sbjct: 2 DQATHNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVLRRLDAVLEPTKQAVLDTKQML 61 Query: 63 GGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116 + I + + + AG +FYNTS ++L L S + + E Y+ FS N + I E Sbjct: 62 DDAGITEQKAALCEAAGQAFYNTSRFTLRDLRSRANQQQLKLDFEDYLDGFSQNVQDILE 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHL 162 +F F + I+ L KA + + + F +++ + + M ++E L Sbjct: 122 NFKFRNQISTLSKADAIGTLIEKFLDPDINVSPNPVLNSDGSVRLPAMDNHSMGTVFEEL 181 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R+F + +E A + TPRD V L L+ P + LYD CGTGG LT Sbjct: 182 VRKFNEDNNEEAGEHWTPRDAVKLMARLIFLPIADQVQSG---SYQLYDGACGTGGMLTL 238 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--- 279 A + + + GQE+ PET+A+C A ML++ + + +I G Sbjct: 239 AEETLLELTAAQDKQVKTYLFGQEINPETYAICKADMLMKG-----EGENADHIVGGAEW 293 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPK 330 STL+ D F F + LSNPP+GK W+KD D + + RF + + Sbjct: 294 STLAHDAFPAHEFDFMLSNPPYGKSWKKDLDTMGGK-DGIRDSRFKITHADDTDYSLITR 352 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 SDG M+FL ++ K+ G R A V + S LF G AG GES IRRW++E D +EAI Sbjct: 353 SSDGQMMFLANMVAKMNHTSRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIEKDWLEAI 412 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQR 449 VALP +LF+ T IATY+W+LSNRK + R+GKVQLI+AT + +R N GKK ++DD Sbjct: 413 VALPLNLFYNTGIATYIWVLSNRKPDHRKGKVQLIDATAWFKPLRKNLGKKNCELSDDDI 472 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 ++I D Y S + S++ + FGY ++ V RPLR+ L + L ++ Sbjct: 473 QRICDTYQSFTESEQSKIFQNKAFGYWKVTVERPLRLHSQLSLPAIESLRFASGDEEIRT 532 Query: 510 LHQSFWLDIL--------KPMMQQIYPYG------------------------------- 530 + D+L K + +++ +G Sbjct: 533 QLYEEFGDVLFEQFSSIEKELAKRLAEWGAGDDEGEDDEAPRKGLSEKKKKKLLDAGTWA 592 Query: 531 --------------------WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 + + K L K + + + A + Sbjct: 593 RDARLMETAQSLRDLLGGDLYEDHNRFRIDVDTALKKLGRKLPAAELKLILKAVSWRVET 652 Query: 571 ADPV----------------------TDVN---GEWIPDTNLTEYENVPYLES--IQDYF 603 A PV D E+ PDT+L + E VP LE I+ + Sbjct: 653 APPVIARLHKPGKATPDPLRGLYPVTIDGKACVVEYEPDTDLRDTEQVPLLEDGGIEAFI 712 Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663 REV P+ PDA++ D+ ++GYEI+F R FY+ QP R L++I A++ VE + Sbjct: 713 QREVLPYTPDAWL--------DESKTKIGYEISFTRHFYKPQPLRTLEEIRADILAVEQE 764 Query: 664 IATLLEEMA 672 LL+++ Sbjct: 765 AEGLLDDLL 773 >gi|322420421|ref|YP_004199644.1| N-6 DNA methylase [Geobacter sp. M18] gi|320126808|gb|ADW14368.1| N-6 DNA methylase [Geobacter sp. M18] Length = 710 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 229/725 (31%), Positives = 350/725 (48%), Gaps = 80/725 (11%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S+ NFIW A+D L + + VILP T++RRL+ LEP++ V G+ Sbjct: 6 HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAG 65 Query: 67 I--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDF 120 I + + AG +FYN S ++L L + + + E+Y+ FS N + I + F F Sbjct: 66 IANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKF 125 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166 + I L +A +L + + F ++ + + M I+E LIRRF Sbjct: 126 RNQIPTLIEADILGHLIEKFLDGRVNLSPKPVQDVDGNEILPALDNHSMGTIFEELIRRF 185 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E +E A + TPRDVV L L+ P + +YD CGTGG LT A Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESG---TYLVYDGACGTGGMLTVAEER 242 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +A+ H + GQE++PET+A+ A +L++ ++N++ GSTLS D Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKG-----EGAEAENMKYGSTLSSDA 297 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSML 337 F + F + LSNPP+GK W+ D + + + + RF + + SDG ++ Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTDLERLGGKGDI-KDPRFVTQHGGDPEYKMITRSSDGQLM 356 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL++ +K++ G R A V + S LF G AG GES IRRW++END +EAI+ALP ++ Sbjct: 357 FLVNKLSKMKHTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENM 416 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456 F+ T IATY+W+L+NRK++ RRGKVQLI+AT+ + + RN GKK +++ R I D+ Sbjct: 417 FYNTGIATYIWVLTNRKSDTRRGKVQLIDATEWYVPLRRNLGKKNCEFSEEHIRAICDLV 476 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 V+ S++ FGY ++ V RPLR++ L L R E K PL Sbjct: 477 VNPVETDKSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERACAKAKEEPL-----A 531 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 ++ + + + + + +A VK + + A PV Sbjct: 532 NLASRVAEALGVGPHLDFNAFMNAVEADADKHGVKLTAKRKKLLQSDLCDTREDAAPVLK 591 Query: 577 V--------------------NG-----EWIPDTNLTEYENVPYLE--SIQDYFVREVSP 609 NG E+ PDT L + E VP LE I+ + REV P Sbjct: 592 KVHKPGKATPDPIHGLVEAEVNGKTCVVEYEPDTALRDTEQVPLLEEGGIEAFIRREVLP 651 Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669 + PDA+ID VGYEI+F R FY+ P R L +I A++ +E + LLE Sbjct: 652 YTPDAWIDPDK--------TLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLE 703 Query: 670 EMATE 674 ++ E Sbjct: 704 QIVGE 708 >gi|78356904|ref|YP_388353.1| type I restriction-modification system specificity subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219309|gb|ABB38658.1| type I restriction-modification system specificity subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 710 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 225/725 (31%), Positives = 354/725 (48%), Gaps = 80/725 (11%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S+ NFIW A+D L + + VILP T++RRL+ LEP++ V G+ Sbjct: 6 HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAG 65 Query: 67 I--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDF 120 I + + AG +FYN S ++L L + + + E+Y+ FS N + I + F F Sbjct: 66 IANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKF 125 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166 + I L +A +L + + F ++ + + M I+E LIRRF Sbjct: 126 RNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDVDGNELLPALDNHSMGTIFEELIRRF 185 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E +E A + TPRDVV L L+ P + +YD CGTGG LT A Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESG---TYLVYDGACGTGGMLTVAEER 242 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +A+ H + GQE++PET+A+ A +L++ ++N++ GSTLS D Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKG-----EGAEAENMKYGSTLSSDA 297 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSML 337 F + F + LSNPP+GK W+ D + + + + RF + + SDG ++ Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTDLERLGGKGDI-KDPRFVTQHANDSEYKMITRSSDGQLM 356 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL++ +K++ G R A V + S LF G AG GES IRRW++END +EAI+ALP ++ Sbjct: 357 FLVNKLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENM 416 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456 F+ T IATY+W+L+NRK++ R+GKVQLI+A++ + + RN GKK ++++Q + I+D+ Sbjct: 417 FYNTGIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLV 476 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 V+ + S++ FGY ++ V RPLR++ L L R + K PL + Sbjct: 477 VNPRETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAK---- 532 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 + + + + + + + +A VK + A PV Sbjct: 533 -LARRVAEALGAGPHIDFNAFMDVAHADADKHGVKLTAKRKKLLQGELCDTREDAAPVLK 591 Query: 577 V------------NG-------------EWIPDTNLTEYENVPYLES--IQDYFVREVSP 609 +G E+ PDT L + E VP LE I+ +F REV P Sbjct: 592 KVHKPGKATPDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGGIEAFFRREVLP 651 Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669 + DA+ID VGYEI+F R FY+ P R L +I A++ +E + LLE Sbjct: 652 YTSDAWIDPGK--------TLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLE 703 Query: 670 EMATE 674 ++ E Sbjct: 704 QIVGE 708 >gi|296116345|ref|ZP_06834961.1| type I restriction-modification methylase M subunit, N-6 DNA Methylase [Gluconacetobacter hansenii ATCC 23769] gi|295977164|gb|EFG83926.1| type I restriction-modification methylase M subunit, N-6 DNA Methylase [Gluconacetobacter hansenii ATCC 23769] Length = 603 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 255/665 (38%), Positives = 365/665 (54%), Gaps = 67/665 (10%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL-ESF 72 IW+ A+ L GDFK ++G+VILPFT+LRRL+ L PTR V ++ + ID Sbjct: 1 MIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWERKGIDPMPFM 60 Query: 73 VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130 K AG F NTS+++L + N NL +YI +FS A+ IF+ F F+ RL KA Sbjct: 61 EKAAGLRFVNTSDFTLKGVLDDPDNLAENLSAYINAFSPAARDIFDHFRFTEQTDRLAKA 120 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 LLY + + F +L V + M ++E LIR+F +E A + TPR+V+ L L Sbjct: 121 NLLYLVLEKFISFDLSDKAVDNHRMGQVFEELIRKFSEASNETAGEHFTPREVIKLMVNL 180 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 + DD+L +RT+YDPT GTGG L+ A + D ++ GQEL PE Sbjct: 181 IFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDARL----TMFGQELNPE 236 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 ++A+C A MLIR + NI+ G+TLS D +F Y LSNPPFG +W+K + Sbjct: 237 SYAICKADMLIRNQDV-------SNIRLGNTLSDDELADHKFDYMLSNPPFGVEWKKVEK 289 Query: 311 AVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 AV EH+ G GRFGPGLP+ISDGSMLFL+HL +K+ L +GG R IVL+ SPLF G Sbjct: 290 AVRAEHEKQGYDGRFGPGLPRISDGSMLFLLHLVHKMRLTKDGGARFGIVLNGSPLFTGA 349 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK + R+GKVQLI+A+ Sbjct: 350 AGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPQNRKGKVQLIDASS 409 Query: 430 LWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 W +R G KR+ + +D + ++ + + + + R + + Sbjct: 410 FWRKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITATDGTQTRAVVMQ------G 463 Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548 + +L+PL + F +G+ V+ + + K + Sbjct: 464 EAPPEA-----PEGGKVRLAPLSRIF----------NNEDFGYQTITVERPQRDGDGKIV 508 Query: 549 KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVS 608 + K+ G+ +PD++L + ENVP E I YF REV Sbjct: 509 LGQRGKA----------------------KGKPMPDSSLRDTENVPLNEDIHAYFKREVL 546 Query: 609 PHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668 PH PDA+ID+ I ++GYEI FNR+FY ++P R L +IDA+LK V +I +L Sbjct: 547 PHAPDAWIDEDKI--------KIGYEIPFNRYFYVFEPPRPLAEIDADLKEVTTKIMAML 598 Query: 669 EEMAT 673 E++ Sbjct: 599 GELSA 603 >gi|229163474|ref|ZP_04291425.1| Type I restriction-modification system methyltransferase subunit [Bacillus cereus R309803] gi|228620043|gb|EEK76918.1| Type I restriction-modification system methyltransferase subunit [Bacillus cereus R309803] Length = 679 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 238/707 (33%), Positives = 362/707 (51%), Gaps = 64/707 (9%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + NFIWKNAE L G +K ++ +V+LP +LRR +C L+PT+ V EK Sbjct: 1 MEQIQNN--EFVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQEVLEKTK 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118 I K+ GY F N S++ TL N NL +YI FS N + IFE F Sbjct: 59 VVKHDAI----LNKITGYDFNNISQFDFQTLLKDPDNIAANLRNYIQGFSVNIRMIFERF 114 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F + I ++++ LLY + + FSGI+L V + M I+E IRRF + A D Sbjct: 115 GFDTQIQKMDEHNLLYSVIQLFSGIDLSIQRVSNIQMGYIFEEFIRRFSE--NAEAGDHY 172 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L L+L+ D + G I + D CGTGG L++A ++ + + ++ Sbjct: 173 TPREVIQLMVNLVLNEDQSEL-MQEGKIVQIGDFACGTGGMLSEATRYIQELNPNAQVE- 230 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297 GQE+ P+++A+ A +LI+ + +I G++L+ D + Y L Sbjct: 231 ---VFGQEINPKSYAIACADLLIKGQN-------AGHIAFGNSLTDADGHKDLQVRYALM 280 Query: 298 NPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPPFG W+ +++++EH+ G+ GR+G GLP+ SDGS+LFL H+ +K++ G R Sbjct: 281 NPPFGVDWKHYGESIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRDEK-GSRM 339 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ + SPLF G AGSGESEIRR ++E DL+E IVALP LF+ T I+TY+WILSNRK + Sbjct: 340 AIIFNGSPLFTGDAGSGESEIRRRIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKND 399 Query: 417 E------RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + R+GK+QL++AT +R G KR I + Q +I IY + K+ ++ D Sbjct: 400 DLIKGAVRKGKIQLVDATSFAEKMRKSLGNKRNEITEPQIAEITRIYGEFKENKYCKIFD 459 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL---------------SPLHQSF 514 FGYR+I V +PL+++F++ + L + + KL P Sbjct: 460 LEDFGYRKITVEQPLQLNFMISPERIENLYNEAAYAKLYDEEAYTELSRKKDKKPADMKK 519 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV---------KASKSFIVAFINAFG 565 + Q + + +++ N LKV + A Sbjct: 520 LEKWEEGKQLQEKILAILDENISDTLYKNREDFLKVLKPLFNNVPEVKAGLWKAIYMGLS 579 Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625 +D AD G+ D L + EN+P E IQ+YF REV PHVPDA+I D Sbjct: 580 ERDETADVCESAKGKVEADPMLRDTENIPLKEDIQEYFEREVLPHVPDAWI--------D 631 Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 + ++GYEI F R+FY+Y+ + +E I LL+++ Sbjct: 632 ESKTKIGYEIPFTRYFYKYEQLESSVILKQRAIELEESIQELLKKVL 678 >gi|294789184|ref|ZP_06754423.1| type I site-specific deoxyribonuclease (modification subunit) [Simonsiella muelleri ATCC 29453] gi|294482925|gb|EFG30613.1| type I site-specific deoxyribonuclease (modification subunit) [Simonsiella muelleri ATCC 29453] Length = 726 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 235/745 (31%), Positives = 371/745 (49%), Gaps = 94/745 (12%) Query: 1 MTEFTGS----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-- 54 MT+ ++L + +W A L G ++ + KV+LP +L R + L Sbjct: 1 MTQIQTQQHPHHSTLVSILWNIANGLRGTYRPPQYRKVMLPLIVLARFDAILANHTDQMK 60 Query: 55 -VREKYLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFS 108 V ++ +D E + + YN S ++L+ L + R N YI FS Sbjct: 61 TVFDENKNLPAVILDKKLTEIIGQNRKQTLYNVSGFNLARLLEDPDHIRANCSKYINGFS 120 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIYEHL 162 AK IF+ F+F + + +L++A L+KI ++F G+ L PD + + M ++E L Sbjct: 121 AKAKDIFDKFEFETELDKLDEANRLFKILQDFIGDLNKHGLTLSPDVISNIQMGYLFEDL 180 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 IR+F + +E A D TPR+V+ L + D +++ G+ RT+YDPTCGTGG L++ Sbjct: 181 IRKFNEQANEEAGDHFTPREVIRLMVNIAFAEDHEELQKA-GVHRTIYDPTCGTGGMLSE 239 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + L +GQE E++A+C A +LI+ + +++I G TL Sbjct: 240 SEKELKGFNQAI----SLGLYGQEYNAESYAICCADLLIK-------DEPAEHIIFGDTL 288 Query: 283 -------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGL 328 D GKRF Y +NPPFG +W+ +D V+KEH++ G GRFG GL Sbjct: 289 GVQNAKDKGNGFTPNDGHQGKRFDYMFANPPFGVEWKIQEDFVKKEHQDQGFNGRFGAGL 348 Query: 329 PKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+I+DGS+LFL H+ +K++ P G R A+V + SPLF G AGSGES IRR+++ENDL Sbjct: 349 PRINDGSLLFLQHMISKMKQPKTDEQGSRIAVVFNGSPLFTGDAGSGESNIRRYVIENDL 408 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIN 445 +EA++ALP +F+ T I TY+WILSN+K+E+R+GK+QLINAT + + ++ G KR ++ Sbjct: 409 LEAVIALPDQMFYNTGIYTYIWILSNKKSEKRQGKIQLINATGYFQKMQKSLGNKRNELS 468 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + I +Y K S++ + + F Y +I V RPLR++F + +L A + Sbjct: 469 EQHITDITQLYTDFIETKDSKIFNNQDFAYLKITVERPLRLNFQASPERIEKLWAQTAFV 528 Query: 506 KLSPLHQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKVK 551 L+ + +K + + + + + K L K Sbjct: 529 NLAKSKKIKDETQIKAEEETGKAQQQAIINTLNGLDNTLYTSRAQFLKVLNPALKGLSFK 588 Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP----------------- 594 S S A + A +D AD TD G PD L + E VP Sbjct: 589 VSGSLQKAILEALSERDQTADICTDSKGNPEPDPQLRDSELVPMPSEMAFPLSLGYDNET 648 Query: 595 --------YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 ++Q Y EV PHV DA++ D+ ++G+EI NR FY+YQP Sbjct: 649 NLSDLLTALRPTVQAYMTAEVLPHVQDAWV--------DESKTKLGFEIPINRHFYEYQP 700 Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671 R L +I +E+ +E +I +L ++ Sbjct: 701 PRDLAEIKSEIVALEQEIMAMLGKL 725 >gi|149927744|ref|ZP_01915996.1| type I restriction-modification system methyltransferase subunit [Limnobacter sp. MED105] gi|149823570|gb|EDM82800.1| type I restriction-modification system methyltransferase subunit [Limnobacter sp. MED105] Length = 682 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 270/689 (39%), Positives = 384/689 (55%), Gaps = 38/689 (5%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + LA+ IWKNAE L G ++ ++ KVILPFT+LRRL+C L P R V +Y A S Sbjct: 1 MSKLADLIWKNAELLRGAYRENEYRKVILPFTILRRLDCVLAPKREEVYTQYEALRNSKY 60 Query: 68 DLESFVK-VAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 D+E + ++ Y F+NTS +SL L + R+NLE+ + FS N + IFE F F STI Sbjct: 61 DMEKILTTISDYPFFNTSRFSLEALAQTPDDVRDNLEAMVNGFSQNVRDIFEKFGFISTI 120 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +LE+ G LY + + F+ +L+PD V + M +E L+R+F A + TPRDV+ Sbjct: 121 NKLEEKGRLYLVVQRFAETDLNPDVVSNHDMGMAFEELLRKFNDVS--PAGEQYTPRDVI 178 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 L +LL D L PG+++T+YDPT GTGG L+ +V +L G Sbjct: 179 ELMVSLLFSTDQDLLSI-PGIVKTMYDPTAGTGGLLSVGEEYVKRMNDRA----VLSLFG 233 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QELE ET+A+C A MLIR NI TL DL G+ F Y +NPP+G + Sbjct: 234 QELEDETYAICKADMLIRGQNP-------ANIVNEDTLKIDLLAGEVFDYQAANPPYGVE 286 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSS 362 W+ +DAV +EHK G GRF PGLP I DG MLF +HL +K+ GGGR +V + Sbjct: 287 WKPAEDAVRREHKLGAAGRFAPGLPAIRDGQMLFSLHLLSKMRPFIDGKGGGRIGVVHNG 346 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR+++ ND +EAIVA+PTDLF+ TNI TYLW ++NRK E+R+GKV Sbjct: 347 SPLFAGDAGSGESEIRRYIMANDYLEAIVAMPTDLFYNTNIQTYLWFMTNRKPEKRQGKV 406 Query: 423 QLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGK----------FSRMLDYR 471 L++A+ + ++ N GKKRR +D QI Y ++ +++ D Sbjct: 407 MLLDASKMGVLMKKNLGKKRREFTEDCIAQINKAYEDFKDMTWKDPAGERVLNAKVFDNA 466 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F YR++ + RPLRM F L + + ++ KL PL Q + L + + Sbjct: 467 HFHYRKVTIERPLRMRFQLTDFARDAVLGNPSFAKL-PLEQRHLVGCLLDVFDSTAVFTN 525 Query: 532 AESF-------VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 A+ F + + + + + I G KDP+AD TD G I D Sbjct: 526 ADDFRSALNAAADQVATTQQLTGKASRLTAKSIELLRKTIGVKDPKADITTDEKGSVISD 585 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 ++L + E VP + + YF EV PH PDA+I+K +D +D +G VG EINFNR FY Y Sbjct: 586 SDLRDAEYVPMNKDVDAYFESEVKPHWPDAWINKEVVDSQDGVVGVVGTEINFNREFYVY 645 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +P R ++I A+++ E + +L+ + Sbjct: 646 KPPRSREEIAADIEAKEKKFMEMLKAIKG 674 >gi|120612013|ref|YP_971691.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1] gi|120590477|gb|ABM33917.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1] Length = 709 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 256/726 (35%), Positives = 380/726 (52%), Gaps = 75/726 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + LANFIW A+ L G ++ + +V+LP T+LRR + L P++ AV ++Y Sbjct: 1 MSVNFQQLANFIWSVADLLRGPYRPPQYERVMLPLTVLRRFDAVLAPSKEAVLKRYEPLR 60 Query: 64 GSNID-----LESFVKVAG---YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113 NI L + K G F+N S+ L N +L YIA FS+N + Sbjct: 61 AKNIPNIDAILNNLAKDEGGTPLGFHNHSQLDFQKLKGDPDNIGRHLADYIAGFSENVRK 120 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IFE F+F I +LE++ LY++ F+ I+LHP V + M ++E LIRRF +E Sbjct: 121 IFERFEFDKEIEKLEESNRLYQVVSQFAEIDLHPKRVDNITMGLVFEDLIRRFNEAANET 180 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A D TPR+V+ L LLL+PD ++ ++ G+I T+ DP CGTGG L +A N + Sbjct: 181 AGDHFTPREVIQLMVNLLLEPDTSVLTQA-GVIVTICDPACGTGGMLAEAQNWIRAHNEQ 239 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + GQ+ P ++AV + +LI+ + G+TL+ D F +RF Sbjct: 240 ATVK----VFGQDYNPRSYAVAASDLLIKG-------HKDGQVVLGNTLTDDPFPEQRFD 288 Query: 294 YCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 Y L+NPPFG W+ +K +++ + G G+ LP+I+DG++LFL+++ +K + G Sbjct: 289 YLLANPPFGVDWKAEKKVIDRWPNFRGYSGK----LPRINDGALLFLLYMMSKFQEYKPG 344 Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G R A+V + SPLF G AGSGES+IRRW++E D +EAIVALP +F+ T I T++ Sbjct: 345 SRDKPGSRTAVVFNGSPLFTGGAGSGESDIRRWIIERDQLEAIVALPEQMFYNTGIGTFI 404 Query: 408 WILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 W+++NRK R+ K+QLI+A + +T + R+ G KRR ++ + + + E+ K SR Sbjct: 405 WVVTNRKASHRKSKIQLIDARERYTPMKRSLGDKRRYLDQAALDDVTREHGALEDSKTSR 464 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + D FGYRRI VLRPLR+ F + R +L Q+ D+ + Sbjct: 465 VFDNADFGYRRITVLRPLRLRFQITDETRERFLNVCP--ELFDALQAVQEDLGTEPLLDW 522 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV--------- 577 A V +++ N K + F + F DP A PV D Sbjct: 523 NQAWGAVQQVFKALPDNIDGWAKGAKGTAQKKIFRDCFTVVDPEAAPVVDKHHKIEPLDC 582 Query: 578 ----------------------------NG---EWIPDTNLTEYENVPYLESIQDYFVRE 606 G E++PD L + EN+P E I Y +RE Sbjct: 583 AALFPGQTLPADLCKDDLYELLGLHADGKGKHIEYVPDPALKDAENIPLKEDIVSYVLRE 642 Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666 V +VPDA+ID+ +DE+D IG+VGYEINFNR F+QYQP R L +IDAEL VE +I Sbjct: 643 VRTYVPDAWIDRATLDEQDGGIGKVGYEINFNRVFFQYQPPRPLHEIDAELAEVEKRILD 702 Query: 667 LLEEMA 672 LL E+ Sbjct: 703 LLREVT 708 >gi|300112914|ref|YP_003759489.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] gi|299538851|gb|ADJ27168.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] Length = 722 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 233/736 (31%), Positives = 353/736 (47%), Gaps = 91/736 (12%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S+ NFIW A+D L + + VILP T++RRL+ LEPT+ V + Sbjct: 6 HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPTKEKVLVMKAQLDEAG 65 Query: 67 I--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDF 120 I + + AG +FYN S ++L L S R + E+Y+ FS N + I + F F Sbjct: 66 IANQHAALCQAAGEAFYNVSPFTLRDLKSRAKLQQLRADFEAYLDGFSPNVQEILDKFKF 125 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166 + I L +A +L + F ++ + + M I+E LIRRF Sbjct: 126 RNQIPTLIEADILGHLIDKFLDTRINLSPRPVQDMDGNERLPALDNHAMGTIFEELIRRF 185 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E +E A + TPRDVV L L+ P + +YD CGTGG LT A Sbjct: 186 NEENNEEAGEHFTPRDVVRLMADLIFLPIADEIESG---TYLVYDGACGTGGMLTVAEER 242 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D 285 +A+ + H + GQE++PET+A+ A +L++ ++NI+ GSTLS D Sbjct: 243 LAELAASHGKEVSIHLFGQEVQPETYAIAKADLLLKG-----EGGGAENIKYGSTLSSSD 297 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSM 336 F + F + LSNPP+GK W+ D D + + + + RF + + SDG + Sbjct: 298 PFLSQEFDFMLSNPPYGKSWKSDVDRLGGK-DDIKDLRFVTHHGGDPAYKMITRSSDGQL 356 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 +FL++ K++ G R A V + S LF G AG GES IRRW++END +EAI+ALP + Sbjct: 357 MFLVNNLAKMKPTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPEN 416 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDI 455 +F+ T IATY+W+L+NRK E+RRGKVQLI+A++ + + RN GKK R + ++ R I D+ Sbjct: 417 MFYNTGIATYIWVLTNRKREKRRGKVQLIDASEWFVPLRRNLGKKNRELTEEHIRAICDL 476 Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 V+ + S++ FGY ++ V RPLR++ L L R E K PL Sbjct: 477 VVTPVETEQSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERTCAKSKEEPL----- 531 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 ++ + + + + +AK +K + + A PV Sbjct: 532 ANLARRVAGVLGAGPHLDFNAFMDACGADAKAHGIKLTAKRKKLLQSELCDTREDAAPVL 591 Query: 576 DV------------NG-----------------------EWIPDTNLTEYENVPYLE--S 598 +G E+ PDT L + E VP LE Sbjct: 592 KKVHRPDKATPDPIHGLFKIELPSPRGRGAGGEGKIHVVEFEPDTALRDSEQVPLLEEGG 651 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 I+ +F REV P+ PDA+ID I ++GYEI+F FY+ P R L+ I A++ Sbjct: 652 IEAFFRREVLPYTPDAWIDPAKI--------QIGYEISFTHHFYKPAPMRTLEAIKADIY 703 Query: 659 GVEAQIATLLEEMATE 674 +E + LLE++ E Sbjct: 704 ALEQETEGLLEQIVGE 719 >gi|209523388|ref|ZP_03271943.1| N-6 DNA methylase [Arthrospira maxima CS-328] gi|209496130|gb|EDZ96430.1| N-6 DNA methylase [Arthrospira maxima CS-328] Length = 679 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 248/704 (35%), Positives = 371/704 (52%), Gaps = 65/704 (9%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 T L+NFIW+ A+ L G ++ + +V+LP T+LRR +C L PT+ V +KY + Sbjct: 6 NTTVDHHQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKQNVLDKYQQY 65 Query: 63 GGSNID---LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFED 117 D AG F+N SE++ L N +L SYI SFS N + IFE Sbjct: 66 KDRLQDKALDSMLDTAAGQRFHNRSEFTFEKLKGDPNNLDQHLVSYINSFSQNIREIFER 125 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F+F++ I ++ +A +LY + F + LHP+ V + M +I+E LIRRF +E A D Sbjct: 126 FEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAGDH 185 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L +L DPDD + + +IR L DP CGTGG L++A N++ Sbjct: 186 FTPREVIGLMVDILFDPDDDILTQ--PVIRKLLDPACGTGGMLSEAQNYLRKNNKDA--- 240 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 L GQ+ P +A+ + +LI+ E IQ G +L+ D ++G+ F Y L+ Sbjct: 241 -QLYVFGQDFNPRAYAIAASDLLIKDNEQSA-------IQFGDSLTDDQYSGETFDYFLA 292 Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPP----NG 352 NPPF W+K + V++EH K G GRFG GLP+++DGS+LFL H +K E Sbjct: 293 NPPFRVYWKKQQKEVKREHEKLGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSDKK 352 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R AIV + SPLF G AGSGESEIR+W++E+D +EAIVALP +F+ T I TYLWI++N Sbjct: 353 GSRLAIVFNGSPLFTGGAGSGESEIRKWIIESDWLEAIVALPEQMFYNTGIGTYLWIVTN 412 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 RK + R+GK+QLI+A W +R G KRR + ++ ++ Y + S++ Sbjct: 413 RKQKHRKGKIQLIDARQRWQPMRRSLGDKRRYMGEEDIAIVVQEYGHFIETETSKIFANE 472 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 FGY R+ + RPLR+ + +D R + LD +K + +Q+ Sbjct: 473 DFGYHRVPIERPLRLLYQMDVDRKLRFLDAVPH----------LLDDVKAIDKQLGREPR 522 Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGE------- 580 + + + + K + K+ F + F ++P A+PV E Sbjct: 523 PDWNEFDRLMKDLLKQRGSRWKKAEKKLFRDVFTEREPEAEPVILKEQKAKDEPYARVWG 582 Query: 581 ------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 + PD+ L ++ENV + + YF+ EV PHV DA+ D Sbjct: 583 WFPVAGKKIERMYEPDSTLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADGTK 634 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 + YEINFNR+FY+Y P R L +IDA++K +E +I LL E+ Sbjct: 635 IKSAYEINFNRYFYKYTPPRPLAEIDADIKQMEQEIIKLLREVT 678 >gi|78773871|gb|ABB51221.1| type I RM system M subunit [Arthrospira platensis] Length = 688 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 67/707 (9%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 T L+NFIW+ A+ L G ++ + +V+LP T+LRR +C L PT+ V +KY Sbjct: 13 NTTVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQC 72 Query: 63 GGSNIDLE---SFVKVAG--YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115 D K AG + F+N SE++ L N +L +YI SFS N + IF Sbjct: 73 KDRFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIF 132 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E F+F++ I ++ +A +LY + F + LHP+ V + M +I+E LIRRF +E A Sbjct: 133 ERFEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAG 192 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 D TPR+V+ L +L DPDD + +I L DP CGTGG L+++ N++ + + Sbjct: 193 DHFTPREVIRLMVDILFDPDDDILT--KPVICRLLDPACGTGGMLSESQNYLRENNKEAQ 250 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + GQ+ P +A+ + +LI+ E IQ G +L+ D ++G+ F Y Sbjct: 251 LW----VFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYF 299 Query: 296 LSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---- 350 L+NPPFG W+K + V++EH+ G GRFG GLP+++DGS+LFL H +K E Sbjct: 300 LANPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSD 359 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP +F+ T I TY+WI+ Sbjct: 360 KKGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIV 419 Query: 411 SNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 +NRK + R+GK+QLI+A W +R G KRR + ++ ++ Y + + S++ Sbjct: 420 TNRKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFK 479 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 FGY R+ + RPLR+ + +D R + L+ ++ + +Q+ Sbjct: 480 NEDFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPH----------LLEDVQAIDKQLGRE 529 Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGE----- 580 + + + ++ K + K+ F + F ++P A+PV E Sbjct: 530 PRPDWNEFDRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDEPYARV 589 Query: 581 --------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626 + PD+ L ++ENV + + YF+ EV PHV DA+ D Sbjct: 590 WGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADG 641 Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 R +EINFNR+FY+Y P R L +ID+++K +E +I LL E+ Sbjct: 642 AKIRSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 688 >gi|284052080|ref|ZP_06382290.1| type I restriction-modification system methyltransferase subunit [Arthrospira platensis str. Paraca] gi|291566233|dbj|BAI88505.1| type I restriction-modification system M subunit [Arthrospira platensis NIES-39] Length = 681 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 67/707 (9%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 T L+NFIW+ A+ L G ++ + +V+LP T+LRR +C L PT+ V +KY Sbjct: 6 NTTVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQC 65 Query: 63 GGSNIDLE---SFVKVAG--YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115 D K AG + F+N SE++ L N +L +YI SFS N + IF Sbjct: 66 KDRFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIF 125 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E F+F++ I ++ +A +LY + F + LHP+ V + M +I+E LIRRF +E A Sbjct: 126 ERFEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAG 185 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 D TPR+V+ L +L DPDD + +I L DP CGTGG L+++ N++ + + Sbjct: 186 DHFTPREVIRLMVDILFDPDDDILT--KPVICRLLDPACGTGGMLSESQNYLRENNKEAQ 243 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + GQ+ P +A+ + +LI+ E IQ G +L+ D ++G+ F Y Sbjct: 244 LW----VFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYF 292 Query: 296 LSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---- 350 L+NPPFG W+K + V++EH+ G GRFG GLP+++DGS+LFL H +K E Sbjct: 293 LANPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSD 352 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP +F+ T I TY+WI+ Sbjct: 353 KKGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIV 412 Query: 411 SNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 +NRK + R+GK+QLI+A W +R G KRR + ++ ++ Y + + S++ Sbjct: 413 TNRKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFK 472 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 FGY R+ + RPLR+ + +D R + L+ ++ + +Q+ Sbjct: 473 NEDFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPH----------LLEDVQAIDKQLGRE 522 Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGE----- 580 + + + ++ K + K+ F + F ++P A+PV E Sbjct: 523 PRPDWNEFDRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDEPYARV 582 Query: 581 --------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626 + PD+ L ++ENV + + YF+ EV PHV DA+ D Sbjct: 583 WGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADG 634 Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 R +EINFNR+FY+Y P R L +ID+++K +E +I LL E+ Sbjct: 635 AKIRSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 681 >gi|289166195|ref|YP_003456333.1| type I restriction-modification system (N6 DNA methylase) [Legionella longbeachae NSW150] gi|288859368|emb|CBJ13304.1| putative type I restriction-modification system (N6 DNA methylase) [Legionella longbeachae NSW150] Length = 711 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 229/725 (31%), Positives = 359/725 (49%), Gaps = 80/725 (11%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 ++ NFIW A+D L + + VILP T++RRL+ LEPT+ +V + Sbjct: 6 HNTITNFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDALLEPTKESVLSMKKQLDNAG 65 Query: 67 I--DLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDF 120 I + + + +FYN S ++L L + + + ESY+ FS N + I E F F Sbjct: 66 IANQDAALCQASDEAFYNCSPFTLRDLKNRTKMQQLKADFESYLDGFSPNVQEILEKFKF 125 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166 + I+ L +A +L + + F ++ + + M ++E LIRRF Sbjct: 126 RNQISTLVEADILGALIEKFLNPNINLSPKPIYDTEGNERLPGLDNHAMGTVFEELIRRF 185 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E +E A + TPRDVV L ++ P + +YD CGTGG LT A Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADVIFLPIAHEIESG---TYLVYDGACGTGGMLTVAEER 242 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + + +GQE++PET+A+ A +L++ ++NI+ GSTLS D Sbjct: 243 LQELATEAGKEVSIHLYGQEIQPETYAIAKADLLLKG-----EGAEAENIKYGSTLSADA 297 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSML 337 F +F + LSNPP+GK W+ D + + + + RF + + SDG ++ Sbjct: 298 FVSNQFDFMLSNPPYGKSWKTDLERMGGKGDI-KDPRFVISYADEPEYEMITRSSDGQLM 356 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL++ K++ G R A V + S LF G AG GES IRRW++END +EAI+ALP ++ Sbjct: 357 FLVNKLMKMKESSKLGSRIAHVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENI 416 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456 F+ T IATY+W+L+NRK++ER+GKVQLI+AT + S+R N GKK ++D+ QI ++ Sbjct: 417 FYNTGIATYIWVLTNRKSQERKGKVQLIDATKWYQSLRKNLGKKNCELSDEHIAQICNLV 476 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 V + S+M FGY +I V RPLR+S L + L++ + K ++ Sbjct: 477 VHPIETEQSKMFPNEAFGYYKITVERPLRLSVQLSEKQLSKFKQQCIAAK-----ETGLF 531 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 I++ + + + +N AK++ VK S + + D A+PV Sbjct: 532 SIVEVLANHLGEGPHKNYNQFINQLNNHAKSMSVKLSAKNVKFLRDNLATVDDEAEPVIK 591 Query: 577 V------------NG-------------EWIPDTNLTEYENVPYLE--SIQDYFVREVSP 609 NG E+ DTNL + E VP LE I +F REV P Sbjct: 592 KIHKLGSVNANPINGLFEMNINGKDVIVEYEADTNLRDSEQVPILEENGIPAFFQREVLP 651 Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669 + PDA+ID +GYEI+F + FY+ P R L++I A++ +E + LL Sbjct: 652 YAPDAWIDI--------SKNTIGYEISFTKHFYRPTPMRTLEEIKADIYAIERETEGLLG 703 Query: 670 EMATE 674 E+ E Sbjct: 704 EIIGE 708 >gi|50086400|ref|YP_047910.1| putative type I restriction-modification system DNA methylase (HsdM) [Acinetobacter sp. ADP1] gi|49532376|emb|CAG70088.1| putative type I restriction-modification system DNA methylase (HsdM) [Acinetobacter sp. ADP1] Length = 751 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 231/765 (30%), Positives = 359/765 (46%), Gaps = 112/765 (14%) Query: 1 MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MT + + +W A + G ++ + +V+LP +L R + L P ++ Sbjct: 7 MTNEVNQHSQHGKIVGLVWSIANIIRGPYRPPQYRRVMLPLIVLGRFDAILAPYADEMKA 66 Query: 58 KYLAFGGSNIDLES-----------FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYI 104 Y + D K + YN S ++L L NL YI Sbjct: 67 SYEKAVATLQDKTPNVFLQKQLSQIADKDRKQNLYNISGFNLKKLLDDPDQFTANLTKYI 126 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNI 158 FS AK IF F+F+ I +L+ A LYK+ + F SG+ L P +V + M + Sbjct: 127 DGFSPKAKDIFAKFEFAKEIEKLDDANRLYKVFQEFRNGLGESGLSLAPSSVSNLQMGYL 186 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E L+R+F + +E A D TPR+V+ L L+ + D ++ G+ R++YDPT GTGG Sbjct: 187 FEELVRKFNEQANEEAGDHFTPREVIELMVNLIFEEDQDELVKA-GVHRSIYDPTAGTGG 245 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L+++ + + +GQE PE++A+C + +LI+ + ++NI Sbjct: 246 MLSESEKFLKKYNDKISLD----MYGQEYNPESYAICCSDLLIK-------DEPAENIVY 294 Query: 279 GSTL------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 G TL +D K FHY SNPPFG +W+ KD +++E K G GRFG Sbjct: 295 GDTLGVKNAKEKDGYVPRDGHADKDFHYMFSNPPFGVEWKNQKDFIDEEEKQGFSGRFGA 354 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 GLP+I+DGS+LF H+ +K++ P GG R A+V + SPLF G AGSGES IRRW++E Sbjct: 355 GLPRINDGSLLFAQHMISKMKASPENGGEGSRIAVVFNGSPLFTGDAGSGESNIRRWIIE 414 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRR 442 ND +EAI+ALP +F+ T I TY+WI+SN+K+E+R+GKVQLI+ T + + ++ G KR Sbjct: 415 NDWLEAIIALPDQMFYNTGIYTYIWIISNKKSEQRKGKVQLIDGTAHYQKMAKSLGNKRH 474 Query: 443 IINDDQRRQILDIYVSRENGKF--------------SRMLDYRTFGYRRIKVLRPLRMSF 488 ++ ++ Y E+ S++ + + FGY ++ V RPLR++F Sbjct: 475 ELSKAHIAELTKFYSKFEDQDTSALIQSKTGEAKICSKIFNNQDFGYLKLTVERPLRLNF 534 Query: 489 ILDKTGLARLEADITWRKLSPLHQSF---------------WLDILKPMMQQIYPYGWAE 533 + +A L+ + L+ + I + +I W Sbjct: 535 TISAERIALLDDQSAFTSLAKSKKVKDTAEISKEEQAGRLQQEAIKNALTAKISDQVWKN 594 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593 + K L K A + A +D AD D G PDT L + E V Sbjct: 595 RDEFLKVLDPILKGLTFKLGAPVKKAILEALSERDQTADICKDSKGNIEPDTQLRDTELV 654 Query: 594 PYLESI-------------------------QDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 + + + + Y EV PHV DA+I D Sbjct: 655 AFPDHLTLPLPVNYDKEPDLSKLLPLVKAHCEAYLKAEVLPHVADAWI--------DYSK 706 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +VGYEI NR FY Y+P R L++I AE+ +E +I +L ++ Sbjct: 707 TKVGYEIPINRHFYIYEPPRPLEEIKAEIVQLEQEIMQMLGGLSA 751 >gi|237809017|ref|YP_002893457.1| N-6 DNA methylase [Tolumonas auensis DSM 9187] gi|237501278|gb|ACQ93871.1| N-6 DNA methylase [Tolumonas auensis DSM 9187] Length = 797 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 229/804 (28%), Positives = 355/804 (44%), Gaps = 158/804 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQQEEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYN S+++L TL + T N Y+ FSDN K I Sbjct: 66 NAVELDDEPLKAASGYVFYNISKWTLKTLHAAATNNQQILLQNFNEYLNGFSDNVKEIVG 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVP-----------DRVMSNIYEHLI 163 F+ S I + + +L + + F I L P + M ++E LI Sbjct: 126 RFNLKSQIRHMAEKQVLLDVVEKFISPNINLTPQECEDASGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQL----PLTMTIYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + +G+E+ ET+A+C + M+I+ + NI+ GSTLS Sbjct: 242 QNFIEEKYPAVGASRDIHLYGKEINDETYAICKSDMMIKGNDP-------ANIKIGSTLS 294 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------------GL 328 D F+ RF + LSNPP+GK W ++ + KE RF Sbjct: 295 TDEFSHMRFDFMLSNPPYGKSWASEQKNI-KEGTEVIDPRFKVQLTDYWGKVDAKGSDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + +K++ P NG G R A V + S LF G AG GES IRR+L+END+ Sbjct: 354 PRSSDGQLLFLMEMVSKMKAPVNGTIGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDM 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLNNNKPERRKGKVQLIDASQLFRKLRKNLGNKNCEFA 473 Query: 446 DDQRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I+ Y+ + S++ + FGY ++ V RP R Sbjct: 474 PEHIAEIMQTYLEFNEVERQLDANGDAIGLASKIFNNEDFGYFKVTVERPDRRKAQFSAE 533 Query: 494 GLARLEADITWRKLSP-------------------------------------------- 509 +A L D + + Sbjct: 534 RIAPLRFDKSLSEAMEYCYGEYNDKVYQAGFLAEQGKHITDWCEKNDISLNNKAKEKLLD 593 Query: 510 ----LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 L LD + +M+ + + + + + K +K S A +NA Sbjct: 594 TAFWLSSRKLLDAAQTLMEGVGEAEFTDFNLFKDKVDAALKASSLKLSAPEKNAILNAVS 653 Query: 566 RKDPRADPVTD---------------------------------VNGE---WIPDTNLTE 589 D A+ V GE + ++L + Sbjct: 654 WYDETAEKVVKKVLKLSADKLAELLELYSCEEGDLPDFGYYPHGKKGEFVTYESSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E+VP +SI YF+ EV PHV +A+++ E ++G EI+FN++FY+++P RK Sbjct: 714 TESVPLKQSIYQYFLDEVKPHVAEAWLN--------MESVKIGCEISFNKYFYRHKPLRK 765 Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673 L+ + E+ +E Q L+ ++ Sbjct: 766 LEAVAQEIIDLEKQADGLIAQILG 789 >gi|88811657|ref|ZP_01126911.1| type I restriction-modification system, M subunit [Nitrococcus mobilis Nb-231] gi|88791048|gb|EAR22161.1| type I restriction-modification system, M subunit [Nitrococcus mobilis Nb-231] Length = 767 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 225/779 (28%), Positives = 359/779 (46%), Gaps = 126/779 (16%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +FIW A+D L F+ + VILP ++RR++ LEPT+ V + Sbjct: 2 DQATHNKIVSFIWGIADDVLRDLFRRGKYPDVILPMCVIRRMDAVLEPTKQTVLDTKKML 61 Query: 63 GGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116 + I + + AG +FYNTS+++L L S ++ + E Y+ FS N + I E Sbjct: 62 DEAQITEQRAALCDAAGQAFYNTSKFTLRDLTSRGSQQQLLADFEDYLNGFSANVQDILE 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +F F + + L ++ L + F I+L P + + M ++E L+R+F E +E A Sbjct: 122 NFKFRNQLPTLSRSDSLGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEA 181 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPRD V L L+ P +A K LYD CGTGG LT A +A + Sbjct: 182 GEHWTPRDAVRLMANLVFLPIEAEIKSG---TYLLYDCACGTGGMLTVAEETLAAIAAKR 238 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKR 291 + +GQE+ PET+AVC + ML++ + + +I G STLS D + + Sbjct: 239 GQQVTTLLYGQEINPETYAVCKSDMLLKG-----EGESADHIVGGAEWSTLSHDAYPAQE 293 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPKISDGSMLFLMHLA 343 F + L+NPP+GK W+KD +A+ + RF + + SDG MLFL ++A Sbjct: 294 FDFMLANPPYGKSWKKDLEAMGGK-TGMRDPRFKVMHNGEELSLVTRSSDGQMLFLANMA 352 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 +K+ G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T I Sbjct: 353 SKMNDKSILGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGI 412 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462 ATY+W+LSN+K R G+VQLI+A+ + +R N GKK ++ + +I ++ + Sbjct: 413 ATYVWVLSNKKPAHRTGQVQLIDASRWFKPLRKNLGKKNCELSTEDIERISRTFLDFKET 472 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD----- 517 S++ FGY ++ V RPLR+ L + + L +L + + + Sbjct: 473 PESKIFPNAAFGYWKVTVERPLRLHSQLSRKAIETLRFASGDEELRAMLFDEFGEELFAN 532 Query: 518 ---ILKPMMQQIYPYGWAESFVKESIKSNEAKT--------------------------- 547 I P+ +++ +G E E + K Sbjct: 533 FSRIANPLEKRLADWGSDEDEGDEDEDATTKKGLPEKKRKKLLDRKTWARDGRLVEVATK 592 Query: 548 --------------------------LKVKASKSFIVAFINAFGRKDPRADPVTDVN--- 578 L +K + + + A + A PV Sbjct: 593 LRAELGDALFEDHNIFRERVSAALKNLGLKLPAAELKLILKAVSWRVETAPPVIAKVHRP 652 Query: 579 GE----------------------WIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDA 614 G+ + PD+ L + E VP LE I+ + REV P+ PDA Sbjct: 653 GKAQADPLHGLFEATVGDKPAIVAYEPDSELRDTEQVPLLEEGGIEAFIRREVLPYTPDA 712 Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +I ++ ++GYE++F R FY+ QP R L++I A++ +E + LL+++ Sbjct: 713 WI--------KEDATKIGYEVSFTRHFYKPQPLRTLEEIRADILAIEKEAEGLLDDILG 763 >gi|238761819|ref|ZP_04622793.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638] gi|238699933|gb|EEP92676.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638] Length = 756 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 274/765 (35%), Positives = 380/765 (49%), Gaps = 140/765 (18%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-----SFVKVAGYSFYNTSEYSLS 89 ILPFTLLRRLEC L PT+ AV + S + E G SF+NTS L Sbjct: 2 ILPFTLLRRLECVLAPTKDAVVAEAEKLKTSPLPEEGREKFLLRATKGLSFFNTSPMDLG 61 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 +G + R NL++Y+ FS +A+ IFE F F+ + L+ A LL+KI K F+ +L P+ Sbjct: 62 KIGQNDIRANLDNYVQCFSKDAREIFEHFKFTEFVGLLDDANLLFKIVKKFATTDLSPNA 121 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + + M ++E LIRRF +E A + TPRD+V L T+L+ D+ + G+IRT+ Sbjct: 122 ISNYEMGLVFEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDNDALSKD-GIIRTI 180 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDPT GTGGFL+ M +V + + ++ GQEL PE++A+C A MLI+ + Sbjct: 181 YDPTAGTGGFLSSGMEYVHELNPNA----VMRAFGQELNPESYAICKADMLIKGQDV--- 233 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGL 328 I+ G+TLS D +F Y LSNPPFG W+K + + EH+ G GRFGPGL Sbjct: 234 ----SRIKLGNTLSNDQLPQDQFDYMLSNPPFGVDWKKIEGEINDEHQLKGFNGRFGPGL 289 Query: 329 PKISDGSMLFLMHLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 P++SDGS+LFLMHL +K+ N GGR I+L+ SPLF G AGSGESEIRR++L Sbjct: 290 PRVSDGSLLFLMHLISKMRDNHNLDGSVSNGGRIGIILNGSPLFTGGAGSGESEIRRYIL 349 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKR 441 E DL+E IVALPTD+F+ T IATY+WILSN+KT ER+ KVQLI+ T+L +R G KR Sbjct: 350 EADLLEGIVALPTDMFYNTGIATYVWILSNKKTPERKDKVQLIDGTNLCGKMRKSLGSKR 409 Query: 442 RIINDDQRRQILDIYVSRENGK----------------------------------FSRM 467 I+ +D + I + E + S++ Sbjct: 410 NIMGEDDIKLITRTFGDFEVVETTTLEALGLEKAPEQKSNRGRQSATAKIEAPKTFASKI 469 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLE---------------------------- 499 + FGYRR+ + RPLR+S + +A L Sbjct: 470 FNSTDFGYRRLTIERPLRLSAQVTDEAIATLRFAPKPFSAPMERLYGEFAGQWQDDNYGD 529 Query: 500 ----------------ADITWRKLSPLHQSFWLDILKPMMQQIYP-------------YG 530 A++ +++ L + +M + Sbjct: 530 FTGLEVEARAIIKAEFAELKEKQIKDLLDRKLWLAQRALMDKAQQIQTALGAKAGGKTQV 589 Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD-------------- 576 + + KT VK FI+A K+P A+PV Sbjct: 590 SDDFNEFQLTLKGAIKTAGVKLDTKENKQFIDAITTKNPDAEPVVKKILKEAVQPLYGAF 649 Query: 577 ----VNGEWIPDTNLTEYENVPYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626 E+ D L + ENVP + I++YF EV PHV DA+I+ D KD Sbjct: 650 EYQGKVVEFEQDGELRDNENVPLNPAIATSDLIENYFKAEVLPHVADAWINADKRDAKDG 709 Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 EIG VGYEI FNR FY YQP R L++IDA+L V A+I LL+E+ Sbjct: 710 EIGIVGYEIPFNRHFYVYQPPRPLEEIDADLDAVSAEIMKLLQEV 754 >gi|332666807|ref|YP_004449595.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] gi|332335621|gb|AEE52722.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] Length = 788 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 233/801 (29%), Positives = 361/801 (45%), Gaps = 155/801 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEELAFQRDEA 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + D +GY FYNTS+++L L T T N E Y+ FS N K I E Sbjct: 66 KFTEWDENGLRDASGYVFYNTSKWTLQLLKDTATNNQQILQANFEDYLNGFSPNVKEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLI 163 F S + + +L + + F+ ++ + M ++E LI Sbjct: 126 KFKLKSQVRHMAAKDVLLDVLEKFTSPAINLTPFEKTDPDGRKLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ +P + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLIFEPVARQL----PPVMTIYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N V D + + +G+E+ ET+A+C + M+I+ + +NI+ GSTLS Sbjct: 242 QNFVKDEEGIIQAKGDVYLYGKEINDETYAICKSDMMIKGNDP-------ENIRVGSTLS 294 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330 D F GK F + LSNPP+GK W ++ ++ K RF P+ Sbjct: 295 TDEFAGKTFDFMLSNPPYGKSWASEQKYIKD-GKEVIDSRFKIKLTDYWGQVEEADATPR 353 Query: 331 ISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + NK++ G R A V + S LF G AG GES IRR+L+END +E Sbjct: 354 SSDGQLLFLMEMVNKMKPLSQSPLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWLE 413 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AI+ LP +LF+ T I TY+W+LSN K R+GKVQLI+A L+ +R N G K + Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSNHKAASRQGKVQLIDAGLLYRKLRKNLGNKNCEFAPE 473 Query: 448 QRRQILDIYVSRENGKFS-------------RMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 R+I+ +Y + + S ++ D FGY ++ + RP R+ Sbjct: 474 HIREIVSVYEEMQEIERSINPSTQEGEGIAAKVFDNADFGYYKVSIERPKRLKAQFTLER 533 Query: 495 LARLEADITWRK---------------LSPLHQSFWLDILKP------------------ 521 +A L D + R+ H+ LD + Sbjct: 534 IAELRFDKSLREPMVWAYETYGEAVYTDLAKHEKDILDWCEKQDLNLNAKQSKALVSPAL 593 Query: 522 -------------MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 +MQ I + + ++ KT K K S S + +NA D Sbjct: 594 WHKQLELLALAAELMQAIGGSAYTDFNRFKNEVDAVLKTKKTKLSASEKNSILNAVSWYD 653 Query: 569 PRADPVT---------------------------------DVNGE---WIPDTNLTEYEN 592 A V D GE + +++L + EN Sbjct: 654 AEAAKVEKATLKLTGDKLAQLLAQLGCTEAQLPDYGYYPSDKKGEYLTYETESDLRDTEN 713 Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652 VP E+ YF+REV PHVP+A+I+ ++GYEI+FN++FY+++P R +++ Sbjct: 714 VPLKENSYRYFLREVKPHVPEAWINLD--------ATKIGYEISFNKYFYRHKPLRSIEE 765 Query: 653 IDAELKGVEAQIATLLEEMAT 673 + A++ +E++ L+ E+ + Sbjct: 766 VSADILKLESESDGLIREILS 786 >gi|229198632|ref|ZP_04325334.1| Type I restriction-modification system methyltransferase subunit [Bacillus cereus m1293] gi|228584914|gb|EEK43030.1| Type I restriction-modification system methyltransferase subunit [Bacillus cereus m1293] Length = 679 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 232/702 (33%), Positives = 354/702 (50%), Gaps = 64/702 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 NFIWKNAE L G +K ++ +V+LP +LRR +C L+PT+ V E+ Sbjct: 5 QNNEFVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQQVLERAKVVKHDA 64 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 I K+ GY F NTS++ TL N NL +YI FS + + IFE F F + I Sbjct: 65 I----LNKITGYDFNNTSQFDFQTLLKDPDNIAANLRNYIQGFSVDIRTIFERFGFDTQI 120 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 ++++ LLY + + FSGI+L V + M I+E IRRF + A D TPR+V+ Sbjct: 121 QKMDEHNLLYSVVQVFSGIDLSIQRVSNIQMGYIFEEFIRRFSE--NAEAGDHYTPREVI 178 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 L L+L+ D + G I + D CGTGG L++A ++ + + ++ G Sbjct: 179 QLMVNLVLNEDQSEL-MQEGKIVQIGDFACGTGGMLSEATRYIQELNPNAQVE----VFG 233 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGK 303 QE+ P+++A+ A +LI+ + +I G++L+ D + Y L NPPFG Sbjct: 234 QEINPKSYAIACADLLIKGQN-------AGHIAFGNSLTNTDGHKDLQVRYALMNPPFGV 286 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 W+ + +++EH+ G+ GR+G GLP+ SDGS+LFL H+ +K++ G R AI+ + Sbjct: 287 DWKHYGEGIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRDEK-GSRMAIIFNG 345 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----- 417 SPLF G AGSGESEIRRW++E DL+E IVALP LF+ T I+TY+WILSNRK ++ Sbjct: 346 SPLFTGDAGSGESEIRRWIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKNDDLVKGA 405 Query: 418 -RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 R+GK+QL++AT +R G KR I + Q I +Y + ++ ++ D FGY Sbjct: 406 VRKGKIQLVDATSFAEKMRKSLGNKRNEITEPQIAGITRMYGEFKENEYCKIFDLEDFGY 465 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH------------------------ 511 +I V RPL+++F++ + L + T+ KL Sbjct: 466 HKITVERPLQLNFMISPKRIENLYNEATFAKLYDKEAYTELSRKKDKKPADMKKLEKWDE 525 Query: 512 -QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 + IL + + I + K + + A +D Sbjct: 526 GKMLQEKILAILQENISDTLYKNREDFLKGLKPLFKNV-PEVKAGLWKAIYMGLSERDEI 584 Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630 AD D + D L + EN+ E IQ+YF REV HVPDA+I D+ + Sbjct: 585 ADVCKDTKRKVEADPTLRDTENISLKEDIQEYFGREVLTHVPDAWI--------DESKTK 636 Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +GYEI F R+FY+Y+ + +E I LL+++ Sbjct: 637 IGYEIPFTRYFYKYEQLESSSVLKQRAIQLEENIQELLKKVL 678 >gi|110639316|ref|YP_679525.1| restriction/modification methyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110281997|gb|ABG60183.1| restriction/modification methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 783 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 227/801 (28%), Positives = 359/801 (44%), Gaps = 151/801 (18%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 2 NQAVHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEEMAFQ 61 Query: 63 GGS----NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAK 112 D + +GY FYNTSE++L L T T N E Y+ +S N K Sbjct: 62 KDEAKFTEWDENGLRQASGYVFYNTSEWTLQRLHDTATNNQQILQANFEDYLKGYSGNVK 121 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIY 159 I E F+ + + +L + + F+ ++ + M ++ Sbjct: 122 EIIEKFNLKRQVQHMASKDVLLNVLEKFTSSYINLTPFEKNDPDGRKLPPLSNLGMGYVF 181 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LIR+F + +E A + TPR+V+ L T ++ +P + T+YDP CG+GG Sbjct: 182 EELIRKFNEDNNEEAGEHFTPREVIDLMTHIIFEPIKDKL----PPVMTIYDPACGSGGM 237 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 LT++ N + D K + +G+E+ ET+A+C + M+I+ +NI+ G Sbjct: 238 LTESQNFIKDEDGEIKAKGDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVG 290 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------P 326 STLS + F G F + LSNPP+GK W ++ ++ K+ RF Sbjct: 291 STLSTNEFAGTTFDFMLSNPPYGKSWASEQKFIKD-GKDIIDPRFKIKLQNYWGIEEEAD 349 Query: 327 GLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 P+ SDG +LFLM + NK++ G R A V + S LF G AG GES IRR+++EN Sbjct: 350 ATPRSSDGQLLFLMEMVNKMKPLSQSKLGSRIASVHNGSSLFTGDAGGGESNIRRYIIEN 409 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443 D +EAIV +P +LF+ T I TY+WILSN K+ +R+GKVQLI+A ++ +R N G K Sbjct: 410 DWLEAIVQMPNNLFYNTGITTYIWILSNNKSNKRKGKVQLIDAGFMFRKLRKNLGNKNCE 469 Query: 444 INDDQRRQILDIYV---------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 + R+I+ +Y E G S++ D FGY ++ + RP R+ Sbjct: 470 FAPEHIREIVSVYEKMQAVDRKVDDEQGISSKVFDNTDFGYYKVTIERPKRLKAQFTAER 529 Query: 495 LARLEADIT-----------------------------WRKLSPL--------------- 510 + L D T W + + L Sbjct: 530 IEELRFDKTLREPMAWAYETYREKVYTEIAKHEKAIIEWCEKNELNLNAKQTKTLVTQAT 589 Query: 511 --HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 Q + + +M++I + + + + K+K S S A +NA D Sbjct: 590 WQKQLDLVTLAMDLMKKIGSKEFNDFNLFKERVDEALAAKKLKLSSSEKNAILNAVSWYD 649 Query: 569 PRADPVTD---------------------------------VNG---EWIPDTNLTEYEN 592 A+ V G E+ ++NL + EN Sbjct: 650 ADAEKVVKGTTKLAGDKLKELLAYLGCKEKELGDYGYFATEKKGEYLEYETESNLRDTEN 709 Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652 VP E+I YF+REV PHV +A+I+ ++GYEI+FN++FY+++P R ++D Sbjct: 710 VPLKEAIYTYFLREVKPHVGEAWINLD--------ATKIGYEISFNKYFYKHKPLRSIED 761 Query: 653 IDAELKGVEAQIATLLEEMAT 673 + A++ +E + L+ E+ Sbjct: 762 VTADILALEKESDGLIAEILG 782 >gi|307826308|ref|ZP_07656515.1| N-6 DNA methylase [Methylobacter tundripaludum SV96] gi|307732664|gb|EFO03534.1| N-6 DNA methylase [Methylobacter tundripaludum SV96] Length = 789 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 220/805 (27%), Positives = 358/805 (44%), Gaps = 154/805 (19%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + L +FIW A+D L + + VILP +LRRL+ LEP+++ V E+ Sbjct: 1 MNH--AAHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKAKVLEEL 58 Query: 60 LAFGGS----NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109 +D +GY FYNTS+++L+ L T T N+E Y+ +S Sbjct: 59 AFQRNDMGLTELDDNGLKDASGYVFYNTSKWTLNQLFKTATNNQQILLANVEEYLNGYSA 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMS 156 N K I + F+ + + + +L + + F+ ++ + M Sbjct: 119 NVKEIIDKFNLKAQVRHMAGKDVLLDVLEKFTSPNINLTPHEVEDPDGNRLPALTNLGMG 178 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIR+F + +E A + TPR+V+ L T L+ DP + T+YDP CG+ Sbjct: 179 YVFEELIRKFNEDNNEEAGEHFTPREVIELMTHLIFDPVKDKI----PPVMTIYDPACGS 234 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT++ N + D + + +G+E+ ET+A+C + M+I+ NI Sbjct: 235 GGMLTESQNFIKDEEGAIRATGDVYLYGKEINDETYAICKSDMMIKGNNP-------SNI 287 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------- 326 + GSTLS D F G RF + LSNPP+GK W ++ ++ + RF Sbjct: 288 RVGSTLSTDEFAGTRFDFMLSNPPYGKSWASEQKYIKD-GADVIDPRFRVTLKDYWGNPE 346 Query: 327 ---GLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 P+ SDG +LFLM + +K++ N G R A V + S LF G AG GES IRR + Sbjct: 347 TVDATPRSSDGQLLFLMEMVSKMKSLDNSPYGSRIASVHNGSSLFTGDAGGGESNIRRHI 406 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440 +ENDL+EAI+ LP +LF+ T I TY+W+LSN K + R+GKVQLI+A+ L+ +R N G K Sbjct: 407 IENDLLEAIIQLPNNLFYNTGITTYIWLLSNNKAQPRKGKVQLIDASQLYRKLRKNLGNK 466 Query: 441 RRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFGYRRIKVLRPLRMSFILDK 492 + R+I+ Y+ + +++ D FGY ++ + RP R Sbjct: 467 NCEFAYEHIREIVTAYLQLATKERQADDAGIAAQVFDNSDFGYYKVNIERPDRRKAQFSN 526 Query: 493 TGLARLEADITWRK---------------------------------------------L 507 + L D + R+ L Sbjct: 527 ERIETLRFDKSLREPMQWIYSQWGEAVYQPGTLDEREKAILVWCDENELNLNTKNRQKLL 586 Query: 508 SPLHQSFWLD---ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 SP LD K +M I ++ + K +K S A +NA Sbjct: 587 SPNTWKKQLDLVQAAKALMAAIGEAESSDFNQFKGQVDEALKAQGIKLSAGDKKAILNAV 646 Query: 565 GRKDPRADPVT---------------------------------DVNGE---WIPDTNLT 588 D A+ V D GE + +T+L Sbjct: 647 SWYDETAEKVIAQKLKLGGDKLDQLLHHLDCTEQDLPDYGYYSTDKKGEYLSYETNTDLR 706 Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 + E++P I+ YF+ EV PHV +A+I+ ++GYEI+FN++FY+++P R Sbjct: 707 DSESIPLKGDIRSYFLAEVKPHVAEAWINLD--------STKIGYEISFNKYFYRHKPLR 758 Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673 ++++ +++ +E + L+ ++ Sbjct: 759 SMKEVASDIIALERRAEGLIADILG 783 >gi|257095816|ref|YP_003169457.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048340|gb|ACV37528.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 769 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 223/772 (28%), Positives = 353/772 (45%), Gaps = 127/772 (16%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +FIW A+D L FK + VILP ++RR++ LEPT+ +V + Sbjct: 2 DQATHNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVIRRMDAVLEPTKQSVLDTRRML 61 Query: 63 GGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116 + I + + AG +FYNTS ++L L S ++ + E Y+ FS N + I + Sbjct: 62 DAAGITEQRAALCDAAGQAFYNTSRFTLRDLKSRGSQQRLLADFEDYLNGFSANVQDILD 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +F F + + L +A + + F I+L P + + M ++E L+R+F E +E A Sbjct: 122 NFKFRNQLQTLSRADAIGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEA 181 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPRD V L L+ P ++ + LYD CGTGG LT A + + Sbjct: 182 GEHWTPRDAVRLMANLVFRPIESAIRSG---TYLLYDCACGTGGMLTVAEETLTAIAAGR 238 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKR 291 + +GQE+ PET+AVC A ML++ + + +I G STL+ D F + Sbjct: 239 GQQVRCLLYGQEINPETYAVCKADMLLKG-----EGESADHIVGGAEWSTLAHDAFPARE 293 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPKISDGSMLFLMHLA 343 F + L+NPP+GK W+KD +A+ + RF + + SDG MLFL ++A Sbjct: 294 FDFMLANPPYGKSWKKDLEAMGGK-DGMRDPRFKVMHQGEELSLVTRSSDGQMLFLANMA 352 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 +K+ G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T I Sbjct: 353 SKMNGQSALGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGI 412 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462 ATY+W+LSNRK R+G+VQLI+A+ + +R N GKK ++ + +I ++ Sbjct: 413 ATYIWVLSNRKPAHRQGRVQLIDASQWFKPLRKNLGKKNCELSPEDIERISRSFLDFAET 472 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL--- 519 S++ FGY ++ V RPLR+ L + L + L + D L Sbjct: 473 PESKIFPNAAFGYWKVTVERPLRLYSQLSLKAIETLRFNSGDEDLRATLYEEFGDDLFTR 532 Query: 520 -----KPMMQQIYPYGWAESFV-----------------KESIKSN-------------- 543 + +++ +G ++ K+ + Sbjct: 533 FSAVSAALEKRLADWGSSDDSEGEDDEGGGTKKGLPERQKKKLLDARTWERDGRLVDVAT 592 Query: 544 -----------------------EAKTLKVKASKSFIVAFINAFGRKDPRADPVT----- 575 K +K + + + + +D A PV Sbjct: 593 RLRVLLGEALFDDHNAFRDRVDTALKAAGIKLAAADLKQILKVVSWRDESAPPVIARVHK 652 Query: 576 ---------------DVNG-----EWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPD 613 V+G E+ PD +L + E VP LE I + REV P+ PD Sbjct: 653 PGKLRAEPLRGFYEATVDGRSSIVEYEPDADLRDTEQVPLLEDGGIAAFIRREVLPYTPD 712 Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 A+I ++ ++GYEI+F R FY+ QP R L++I A++ +E + Sbjct: 713 AWI--------KEDATKIGYEISFTRHFYKPQPLRTLEEISADILAIEKEAE 756 >gi|150017996|ref|YP_001310250.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052] gi|149904461|gb|ABR35294.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052] Length = 673 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 229/690 (33%), Positives = 371/690 (53%), Gaps = 48/690 (6%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFGGS 65 + +F+W AE L G +K D+ KV++P ++RR +C L+ + +K Y Sbjct: 6 NFVSFLWNIAESLRGTYKEEDYRKVMIPMIVVRRFDCLLDDYDKEIIKKVYSNYDYMPEE 65 Query: 66 NIDLESFVKVA-----GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118 ID + FYN S+++ L S N + N E Y+ FS+N K I F Sbjct: 66 EIDEIVIADLKENHNIDLQFYNVSDFTWKKLLDDSENIKANFEEYLNGFSNNVKEIIGKF 125 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +F + I +L+K LY + + S ++LH + + + M IYE ++RRF + A + Sbjct: 126 NFKAEITQLDKKNKLYAVLQKMSEVDLHINKISNNKMGYIYEEMLRRFTENSA--AGEQY 183 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L +L ++ G + ++ D CGTGG L+ A +V + + Sbjct: 184 TPREVIKLCMEMLFLGKESFIT-EEGKVISIADFCCGTGGMLSIAEAYVENLNEKAIVD- 241 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 +GQEL E+ A+C A ML++ D NI+ G+TL++D F+G+ + +SN Sbjct: 242 ---VYGQELLDESFAICQADMLMKGQNPD-------NIRLGNTLTEDRFSGEHMRFLISN 291 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG W+ ++ V+ E G GRFG G P++SDGS+LFL ++ +K+ G R AI Sbjct: 292 PPFGVTWKDEEKKVKDEADLGFDGRFGAGTPRVSDGSLLFLQNMISKMYDD-EEGSRIAI 350 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 + + SPLF G AGSGES IRRW++END++E I+ALPTD+F+ T IATY+W+++NRKTE R Sbjct: 351 IFNGSPLFTGDAGSGESNIRRWIIENDMLEGIIALPTDMFYNTGIATYIWVITNRKTENR 410 Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +GK+QL+NATD + +R G KR+ I+ +Q ++I IY S E + R+ D + FGYR+ Sbjct: 411 KGKIQLVNATDFYVPMRKSLGNKRKEISTEQIQEIKSIYESFEPSENCRIFDNKEFGYRK 470 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD--------------ILKPMM 523 I + RPL++SF +D+ +++++ + L+ + I++ + Sbjct: 471 ITIERPLKLSFKVDEEAISKVKETTQFINLAVSKKKDEAAKASEEALGKEVQNKIIEMLQ 530 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 + ++AK + + + A ++ G ++ AD D G Sbjct: 531 SFDSNEVYLNREEFIKKVKSKAKNYDLTLGAALLKAIWSSIGERNEDADICKDSKGNPES 590 Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 D++L + E++ E I YF REV PHVPDAY+D+ +GYEI F R FY+ Sbjct: 591 DSSLKDTESIQLKEDINAYFEREVKPHVPDAYMDETTFSN-------IGYEIPFTRHFYK 643 Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 Y+ R DI E++ +E +IA ++++ Sbjct: 644 YEKLRAFSDIMKEVEDLEQEIAVEIKKVLG 673 >gi|284041086|ref|YP_003391016.1| N-6 DNA methylase [Spirosoma linguale DSM 74] gi|283820379|gb|ADB42217.1| N-6 DNA methylase [Spirosoma linguale DSM 74] Length = 787 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 224/807 (27%), Positives = 361/807 (44%), Gaps = 156/807 (19%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M S L +FIW A+D L + + VILP +LRRL+ LEP + V E+ Sbjct: 1 MNH--QSHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPGKDEVMEEV 58 Query: 60 ----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109 G + +D+ +GY FYNTS ++L L T T N Y+ FSD Sbjct: 59 RFQREEAGFTELDVNGLQAASGYVFYNTSVWTLQKLHDTATNNQQLLEANFTDYLDGFSD 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMS 156 N K I F+ S + + +L + + F+ ++ + M Sbjct: 119 NVKEIIRKFNLKSQVKHMANKDVLLDVLEKFTSPTINLTPFEKLDPEGRKLPALSNLGMG 178 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIR+F E +E A + TPR+V+ L T ++ +P + T+YDP CG+ Sbjct: 179 YVFEELIRKFNEENNEEAGEHFTPREVIDLMTHVIFEPIKDRL----PPVMTIYDPACGS 234 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT++ N + D + + G+E+ ET+A+C + M+I+ + +NI Sbjct: 235 GGMLTESQNFIKDEDGLIRAKGDVYLFGKEINDETYAICKSDMMIKGNDP-------ENI 287 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG----------- 325 + GSTLS D F GK+F + LSNPP+GK W ++ ++ ++ RF Sbjct: 288 KNGSTLSTDEFAGKQFDFMLSNPPYGKSWASEQRHIKDGNE-VIDSRFRIKLKNYWGVEE 346 Query: 326 --PGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 +P+ SDG +LFLM + +K++ G R A V + S LF G AG GES IRR+L Sbjct: 347 DADAIPRSSDGQLLFLMEMVSKIKPLAASPSGSRIASVHNGSSLFTGDAGGGESNIRRYL 406 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440 +ENDL++AI+ LP +LF+ T I TY+W+L+N K R+GKVQLI+A L+ +R N G K Sbjct: 407 IENDLLDAIIQLPNNLFYNTGITTYIWVLTNSKPANRQGKVQLIDAGPLYRKLRKNLGAK 466 Query: 441 RRIINDDQRRQILDIYVS-------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + + +I+ Y ++G S++ D FGY ++ + RP R+ Sbjct: 467 NCELAPEHITEIVKTYQDLAIVDRTGDDGLASKVFDNADFGYYKVTIERPKRLKAQFSAE 526 Query: 494 GLARLEADITWRK----------------------------------------------L 507 +A L D R+ Sbjct: 527 RIAELRFDNKLREPMVWAWETYGERVYTDLPALEKDIIDWCEKQELNLARKQQEALLKPD 586 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + L Q ++ +M+ I ++ + E K L +K S S ++A Sbjct: 587 NWLKQQGLMNTATKLMKAIGTDEYSNFNIFAREVEMELKALGLKLSASEKKQIMDAVSWY 646 Query: 568 DPRADPVT----DVNG-------------------------------------EWIPDTN 586 D A+ V + G E+ +++ Sbjct: 647 DAEAEKVIKGTTKLKGEKLTDLLEHLNCTEAQLPDFGYFVTGTPDREKPGEYLEYETESD 706 Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 L + ENVP E I DYF+REV PHV +A+I+ ++GYEI+FN++FY+++P Sbjct: 707 LRDTENVPLKEDIHDYFLREVKPHVSEAWINLD--------ATKIGYEISFNKYFYRHKP 758 Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673 R + + A++ +E + L++ + Sbjct: 759 LRDIAAVSADILQLEDESEGLIKAILA 785 >gi|71737179|ref|YP_272418.1| type I restriction-modification system DNA methylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557732|gb|AAZ36943.1| type I restriction-modification system DNA methylase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 801 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 228/802 (28%), Positives = 353/802 (44%), Gaps = 156/802 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEP+++ V E+ G Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKAKVMEELAFQQGEM 65 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116 +D + +GY FYNTS+++LS L T T N N+E Y+ FSDN K I Sbjct: 66 SQTELDDSALRSASGYVFYNTSKWTLSQLQKTATNNQQILLNNVEEYLDGFSDNVKDIVR 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ S + + +L + + F+ ++ + M ++E LI Sbjct: 126 RFNLKSQMRHMASKDVLLDVLEKFTSPYVNLTPTDIEDPEGNRLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDSL----PPVMTIYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + +G+E+ ET+A+C + M+I+ +I+ GSTLS Sbjct: 242 QNFIEEKYPDPTTQRDIHLYGKEINDETYAICKSDMMIKGNNP-------AHIRPGSTLS 294 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F G RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 295 VDEFAGSRFDFMLSNPPYGKSWASEQKFIKDCGE-VIDPRFKVSLRDYWDNPEMQDATPR 353 Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + NK++ G G R A V + S LF G AGSGES IRR L+ENDL++ Sbjct: 354 SSDGQLLFLMEMVNKMKASGEGSLGSRIASVHNGSSLFTGDAGSGESNIRRHLIENDLLD 413 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AI+ LP +LF+ T I TY+W+LS+ K +RRGKVQLI+A+ L+ +R N G K + Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSSNKPVQRRGKVQLIDASLLYRKLRKNLGNKNCEFAPE 473 Query: 448 QRRQILDIYVSRE--------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 I Y+ +G +++ D R FGY ++ + RP R + L Sbjct: 474 HIELITQTYLDLASLDRPAGGDGIAAQVFDNRDFGYHKVSIERPDRRKAQFSAERIETLR 533 Query: 500 ADITWRKLSPLHQSFWLDILKP-------------------------------------- 521 D R+ W + L Sbjct: 534 FDKALREPMQWIYQQWGEALYQDEALATHEKAILAWCEEQGLELNIKQRKKLLNLETWAK 593 Query: 522 ----------MMQQIYPYGWAESFVKESIKSNEAKTL----KVKASKSFIVAFINAFGRK 567 +MQ I + + + + K L +K S +NA Sbjct: 594 QALLVTVANYLMQAIGSDEYDDFNLFAKLVDKVLKQLNKEVGIKLGASERNQVLNAVSWY 653 Query: 568 DPRADPVT---------------------------------DVNGE---WIPDTNLTEYE 591 D A V D GE + +++L + E Sbjct: 654 DENAVKVLRKVEKFDRAELAALLERLDCIEADLADFGYYPSDKAGEWITYESNSDLRDSE 713 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 ++P +SI +F EV PHV +A+I+ E ++GYEI+FN++FY++QP R Sbjct: 714 SIPLADSIHHFFKAEVQPHVEEAWINL--------ESVKIGYEISFNKYFYKHQPLRSTD 765 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 ++ E+ +E Q L+ E+ Sbjct: 766 EVAREIIALEQQAEGLIAEILG 787 >gi|294665738|ref|ZP_06731011.1| type I restriction-modification system DNA methylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604474|gb|EFF47852.1| type I restriction-modification system DNA methylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 615 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 263/678 (38%), Positives = 372/678 (54%), Gaps = 73/678 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + ASL+ FIW A+ L GD+K +++G+VILPFT+LRRL+C LE T+ AV ++ A Sbjct: 1 MHLNHASLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEKTKPAVLAEFDAKT 60 Query: 64 GSNIDLESFVKV-AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + ++ + F+K A SFYNTS LS L + R NL +YI +FS A+ IFE FDF Sbjct: 61 KAGLNPDPFLKKKARQSFYNTSSLDLSKLLGDQDHIRQNLYAYIQAFSPEARDIFERFDF 120 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + RL KA LLY + + F+ I+L P+ V + M +++E LIR+F +E A + TP Sbjct: 121 HAQVERLAKANLLYLVTEKFANIDLPPEVVDNATMGSVFEELIRKFAEISNETAGEHFTP 180 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+V+ L LL DD + ++RT+YDPT GTGG L+ A ++A+ ++ Sbjct: 181 REVIRLMVGLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSIAGEYLAEHNPQARL---- 236 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 + HGQEL E++A+C A MLI+ +NI G+TLS D G +F Y LSNPP Sbjct: 237 IMHGQELNDESYAICKADMLIKG-------QAVENIVAGNTLSDDGHAGHKFDYMLSNPP 289 Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 FG +W+K + V EHK G GRFGPGLP++SDGSMLFLMHL K+ +GG R IV Sbjct: 290 FGVEWKKVEKTVRAEHKTKGFDGRFGPGLPRVSDGSMLFLMHLLAKMRPARDGGSRFGIV 349 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 L+ SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K +R+ Sbjct: 350 LNGSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPADRK 409 Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 G VQLI+A W +R G KR+ + ++ + ++ + + Sbjct: 410 GWVQLIDAGSFWQKMRKSLGSKRKQMGEEHIDTVTRLFGDFTEAEL-------------V 456 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI---YPYGWAESF 535 V +D TG A+ + S + + + +I +G+ Sbjct: 457 TV---------IDATGNAQGAPQLVTATDSAPQAPEGGRLKRVPIARIFKNEDFGYTTIT 507 Query: 536 VKESIKSNEAK-TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP 594 V+ +K L +K + +A +D P+ GE+ Sbjct: 508 VERPLKDEAGNVVLGLKGKQKGKPQPDSAL--RDTENVPLDQDIGEY------------- 552 Query: 595 YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654 F REV PH PDA++ D+E +VGYEI FNR FY ++P R L ID Sbjct: 553 --------FAREVLPHAPDAWV--------DQEKSKVGYEIPFNRHFYVFEPPRSLHAID 596 Query: 655 AELKGVEAQIATLLEEMA 672 ELK V A I +L E+A Sbjct: 597 EELKAVTASIMKMLGELA 614 >gi|309390281|gb|ADO78161.1| N-6 DNA methylase [Halanaerobium praevalens DSM 2228] Length = 698 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 246/728 (33%), Positives = 379/728 (52%), Gaps = 85/728 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M F NFIW A L G +K +G +ILP ++LRR +C LEPT+ V EK Sbjct: 1 MNNFGEK----VNFIWNIANLLRGPYKPEKYGDIILPLSVLRRFDCILEPTKDKVLEKAK 56 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118 E AG F+N S+Y L N NL +YI FS N + I E+F Sbjct: 57 QVEI----PELLNAAAGLKFHNKSKYDFEKLLDDPDNIAENLRAYIRGFSANIREIMENF 112 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF I +L LL+ + K F+ ++LHP+ V ++ M I+E LIRRF + A D Sbjct: 113 DFDKEITKLNSNNLLFLVVKEFNKLDLHPEKVSNQEMGYIFEELIRRFSE--NAEAGDHY 170 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L ++ ++ + +P I T+ D CGTGG L+ A N++ ++ Sbjct: 171 TPREVIELMVNIIFSGEEDVVT-NPANISTIGDFACGTGGMLSVAENYIHKMNKEAEV-- 227 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 +GQE+ +++A+C A MLI+ + + NI G++L+ DL G R Y L N Sbjct: 228 --ALYGQEINDQSYAICKADMLIK-----DEGENADNIALGNSLTNDLHKGLRVRYGLMN 280 Query: 299 PPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG W KD V+KEHKN G GRFG G P+ SDGS+LFL H+ +K++ G R A Sbjct: 281 PPFGVSWSKDSKEVKKEHKNQGFDGRFGAGTPRTSDGSLLFLQHMLSKMKTDKK-GSRMA 339 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+ + SPLF G A SGESEIRRW++ENDL+E I+ALP +LF+ T IATY+W+LSNRK ++ Sbjct: 340 IIFNGSPLFTGDANSGESEIRRWIIENDLLEGIIALPEELFYNTGIATYIWVLSNRKNDD 399 Query: 418 ------RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 R+ K+QL++AT +R GKKR I Q +I +IY + ++ ++S++ D Sbjct: 400 LAKGPIRKDKIQLVDATSFSEPMRKSLGKKRNKITKPQINRITEIYGAFQDNEYSQIFDK 459 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL--------------------SPL 510 FGY ++++ RPL+++F + + + + A+ T+ KL Sbjct: 460 EEFGYLKVRIERPLKLNFKITEDRIENIYAENTFSKLFDEEKYKKLKKLSEAPEFKSKDK 519 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK-------ASKSFIVAFINA 563 ++ L+ K + +I A + K+ + +K +S + A N Sbjct: 520 NKLEKLEAGKKLQDKILNRLRANIEQDKVWKNRKEFKEVLKEILGDLDLKRSLMKAVRNG 579 Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENVPY------------------LESIQDYFVR 605 ++D AD G+ DT+L +YE + + ++IQ YF Sbjct: 580 LAKRDETADYC-KKRGKIESDTDLRDYERILFSHKVEGYKQDYSDFVEKEKDNIQTYFEE 638 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV PHVP+A++D + RVGYEI F R+FY+++ I +++ +EA+I Sbjct: 639 EVKPHVPEAWVDYSY--------TRVGYEIPFTRYFYEFEELEPSHKIKEDIEKLEAEIN 690 Query: 666 TLLEEMAT 673 +++++ Sbjct: 691 EIMQKVLG 698 >gi|167771154|ref|ZP_02443207.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM 17241] gi|167666824|gb|EDS10954.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM 17241] Length = 671 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 216/708 (30%), Positives = 345/708 (48%), Gaps = 76/708 (10%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + NFIW A+D L + + VILP T++RRL+ L+ T+ V + Sbjct: 1 MIMDNQIHNQIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLQDTKQQVMDMK 60 Query: 60 LAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKA 113 + I ++ AG +F NTS + L L + + +Y+ FS N + Sbjct: 61 AKLDAAGITNQTDALCVAAGQAFCNTSPFRLRDLTARAKQQQLKADFIAYLDGFSPNVQE 120 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF----------------SGIELHPDTVPDRVMSN 157 I + F F + I + +A +L + + F S E+ + + M Sbjct: 121 ILQKFQFRNQIDTMIEADILGAVIEKFVSKEINLSPNPVYTDDSKTEIKLPGLDNHAMGT 180 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 I+E LIR+F +E A + TPRDVV L L+ P K+ + YD CGTG Sbjct: 181 IFEELIRKFNEANNEEAGEHYTPRDVVELMADLIFVPIKDQIKD---ATYSCYDGACGTG 237 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 G LT A + + + + GQE++PET+A+C A ML++ +++I Sbjct: 238 GMLTVAQDRLLELAEETGKQVSIHLFGQEVQPETYAICKADMLLKG-----DGKQAEHIS 292 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------GL 328 GSTLS D ++F + LSNPP+GK W+ D + + + K+ RF + Sbjct: 293 YGSTLSMDGNAARQFDFMLSNPPYGKTWKVDAEKMGGK-KDILDSRFNAYLEDGTQLAMI 351 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 P++SDG +LFL++ A K++ G R A V + S LF G AGSGES RR+L+E+DL+E Sbjct: 352 PRVSDGQLLFLLNNAAKMKTDTPLGSRIAEVHNGSSLFTGDAGSGESNARRYLIESDLVE 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 A++ALP +F+ T I TY+W+LSN+K E R+GK+QLI+AT + +++R N G+K + + Sbjct: 412 AVIALPEKMFYNTGIGTYIWVLSNKKEERRKGKIQLIDATTMKSTLRKNMGEKNCELTPE 471 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 R +I+ I++ E SR+ D R F Y I V RPLR+ D+T T++K Sbjct: 472 LRDEIMRIFMEMEESSVSRVFDNREFAYWSITVERPLRLRVYPDRT-----IPADTFKKA 526 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 L Q ++ + W K + + K Sbjct: 527 EELEQ--VQKAIRSVPAGTPTDDWTVFAEAT------------KLKAAALKKIRPFITEK 572 Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKD 625 DP A P+ PDT+L + E +P+ I + EV P+ PDA++ D Sbjct: 573 DPMAQPIDG-----EPDTDLRDTEIIPFTYEGGIDAFMKNEVLPYAPDAWV--------D 619 Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 ++ ++GYE++F ++FYQ R +++I A+LK +E++ +L E+ Sbjct: 620 EKKTQIGYELSFTKYFYQPVQLRSMEEIVADLKKLESETDGILAEILG 667 >gi|297619042|ref|YP_003707147.1| N-6 DNA methylase [Methanococcus voltae A3] gi|297378019|gb|ADI36174.1| N-6 DNA methylase [Methanococcus voltae A3] Length = 695 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 234/717 (32%), Positives = 359/717 (50%), Gaps = 86/717 (11%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 NFIWK AE L G +K +G VILP +LRR +C L + +V E+ I Sbjct: 8 VNFIWKIAELLRGAYKPEKYGDVILPMAVLRRFDCLLADKKESVLERAKETDVEAI---- 63 Query: 72 FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 VAGY F N S++ L + N N + YI FS N + I + F+F I +LE+ Sbjct: 64 LNNVAGYEFSNKSKFDFEKLKNDSDNIETNFKDYIKGFSSNIRTIIDKFEFDKEIKKLEE 123 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 LLY + K F+ I+LHP+ V + M I+E LIRRF + A D TPR+V+ L Sbjct: 124 NNLLYLVVKEFNSIDLHPNVVSNVEMGYIFEELIRRFSE--NAEAGDHYTPREVIELMVN 181 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 L+ + + G I T+ D CGTGG L+ A N++ + GQEL Sbjct: 182 LIFNGLEDEI-REEGRIFTVGDFACGTGGMLSVATNYIKKLNPGATVE----LFGQELNN 236 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 +++AVC + MLI+ + NI G++L+ D + + L NPPFG W+KDK Sbjct: 237 QSYAVCCSDMLIKG-------QSAGNIAFGNSLTADKHVNRDVQFALMNPPFGVDWKKDK 289 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 DA+++E K GRFG GLP+ SDGS+LFL H+ +K+ G R AI+ + SPLF G Sbjct: 290 DAIDEEAKKEFNGRFGAGLPRTSDGSLLFLQHMVSKMRHDEK-GSRMAIIFNGSPLFTGD 348 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------RRGKVQ 423 AGSGESEIRRW++ENDL+E I+ALPTDLF+ T IATY+WI++NRK + R GK+Q Sbjct: 349 AGSGESEIRRWIIENDLLEGIIALPTDLFYNTGIATYIWIITNRKNDNILNGPVRSGKIQ 408 Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 LI+AT+ + +R G KR I+D +I +Y + ++ ++ D + FGY ++ + R Sbjct: 409 LIDATNFYHKMRKSLGSKRNKISDSDITEITRLYGEFKENEYCKIFDNKDFGYLKVTIER 468 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD------------------------- 517 PL+++F + + + + ++ + KL + L+ Sbjct: 469 PLKLNFQISEERIENIYSESAFSKLYDEDKVEELELKKQKQIIKAKENTELEKQYVGKSI 528 Query: 518 ---ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574 I+ + I + + S + K L SK A + +D AD Sbjct: 529 QDNIIDVLKNNIDEKIYKNREEFDKELSKKLKRLD--LSKPVYKAVLMGLSERDETADYC 586 Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQD-------------------YFVREVSPHVPDAY 615 + D++L + E +P +++ Y EV PHV + + Sbjct: 587 YKGKSK-EADSDLRDTEMIPLSMDVEEYNKKDSSKHIAKEKENILNYLEAEVKPHVNEYW 645 Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 ID + ++GYEI F R FY+++ R +I E++ +E +I T ++++ Sbjct: 646 IDD--------KKTKIGYEIPFTRHFYKFEELRPFAEIMKEVEELETEIQTDVKKVF 694 >gi|255308176|ref|ZP_05352347.1| N-6 DNA methylase [Clostridium difficile ATCC 43255] Length = 675 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 225/687 (32%), Positives = 370/687 (53%), Gaps = 48/687 (6%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA----VREKYLAFGGSNID 68 F+W AE L G +K D+ KV+LP ++RR +C L+ V ++Y D Sbjct: 11 AFLWNIAESLRGTYKEEDYRKVMLPLIVIRRFDCLLDDYDREIVKSVYKEYDFLPEEEKD 70 Query: 69 LESFVKVA-----GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 V + FYN S+++ L S N ++N E Y+ FS++ K I F F Sbjct: 71 ELVIVDLKENHNIDLQFYNVSDFTWKKLLDDSENIKSNFEEYLNGFSNSVKEIIGKFKFK 130 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 IA+L+K LY + ++LH ++V + M IYE ++RRF + A + TPR Sbjct: 131 DEIAQLDKKDKLYAVLSKMYEVDLHINSVSNNEMGYIYEEMLRRFTENSA--AGEQYTPR 188 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V+ L +L + G + ++ D CGTGG L+ A ++V + Sbjct: 189 EVIRLCMEMLFMGKENFLT-EEGKVISIADFCCGTGGMLSIAEDYVEKVNPSAIVN---- 243 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL E+ A+C A M+++ D NI+ G+TL++D F+G++ + +SNPPF Sbjct: 244 VYGQELLDESFAICQADMIMKGQNPD-------NIRLGNTLTQDRFSGEKIRFLISNPPF 296 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G W+ ++ V++E G GRFG G P++SDGS+LFL ++ +K+ G R AI+ + Sbjct: 297 GVTWKDEEKKVKEEADLGFDGRFGAGTPRVSDGSLLFLQNMISKMYDD-EEGSRIAIIFN 355 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF G AGSGES IR+W++E DL+E I+ALPTD+F+ T IATY+W+L+N+K ++R+GK Sbjct: 356 GSPLFTGDAGSGESNIRKWIIEKDLLEGIIALPTDMFYNTGIATYIWVLTNKKEDKRKGK 415 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 +QL+NA++ + +R G KR+ I+ +Q +I +IY E + S++ D FGYR++ + Sbjct: 416 IQLVNASEYYQLMRKSLGNKRKEISLEQIEEIKEIYERFEESENSKIFDNEGFGYRKVTI 475 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDILKPMMQQI 526 RPL++SF +++ + ++ + LS + +LK + Sbjct: 476 ERPLKLSFRVNEEAIENVKNTTQFINLSVSKKKDEEVKVKEEAEGRVKQDKLLKLLESFD 535 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586 + + + +++K V S I A +NA G ++ A D G D++ Sbjct: 536 SEFEYMKRDKFIKDLKSKSKLYDVALSAGLIKAIVNAIGVRNEDAVVCKDAKGNIESDSS 595 Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 L + E++ E + +YF +EV PHV DAYID+ ID +GYEI F R+FY+Y+ Sbjct: 596 LKDTESIALKEDVYEYFEKEVKPHVEDAYIDESSIDN-------IGYEIPFTRYFYKYEK 648 Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673 + DI E++ +E++IA + ++ Sbjct: 649 LKSFDDIMKEVESLESEIALEIRKVLG 675 >gi|289523864|ref|ZP_06440718.1| type I restriction-modification system, M subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502520|gb|EFD23684.1| type I restriction-modification system, M subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 701 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 226/723 (31%), Positives = 353/723 (48%), Gaps = 102/723 (14%) Query: 2 TEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 T + NFIW A+D L + + VILP T++RRL+ LEPT+ AV + Sbjct: 26 TMEVSQLTWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKRAVLDLKA 85 Query: 61 AFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAI 114 + + I + + AG +FYNTS ++L L + +R + +Y+ FS N + I Sbjct: 86 SLDKAGIVHQDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEI 145 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYE 160 ++F+F + I RL KA L + + F ++ + M I+E Sbjct: 146 IDNFEFRNQIPRLTKADALGTLIEKFLDPSINLSPYPVLDSAGSVRLPGLDNHAMGTIFE 205 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 L+RRF E +E A + TPRD V L L+ +P + LYD CGTGG L Sbjct: 206 ELVRRFNEENNEEAGEHWTPRDAVRLMARLIFEPIADQIESG---TYLLYDGACGTGGML 262 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG- 279 T A + + GQE+ ET+A+C + +L++ + + NI G Sbjct: 263 TVAEETLLQLAKERGKQVSMHLFGQEINAETYAICKSDLLLKG-----EGEAADNIVGGP 317 Query: 280 --STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LP 329 STLS D F G+ F + LSNPP+GK W+ D + + + + RF + Sbjct: 318 EHSTLSNDAFPGREFDFMLSNPPYGKSWKSDLERMGGK-SGIKDPRFVVQHRGEELSLIT 376 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 + SDG MLFL+++ +K++ G R A V + S LF G AG GES IRRW++END +EA Sbjct: 377 RSSDGQMLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEA 436 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448 IVALP ++F+ T IATY+W+L+NRK E R+G+VQLI+AT + +R N GKK ++++ Sbjct: 437 IVALPLNMFYNTGIATYVWVLTNRKPEHRKGRVQLIDATQWYKPLRKNLGKKNCELSEED 496 Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 R++LD ++ E + S++ FGY ++ V RPLR+ +D + R+ + Sbjct: 497 IRRVLDTFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKG-IDPERTYTPKEIKALRETA 555 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 + P++++I+ G A ++ + A +V Sbjct: 556 ER-----AEDAPPVIKKIHKPGTAPDPLRGLFEMVIAGKPRV------------------ 592 Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLE------------------SIQDYFVREVSPH 610 E+ PD L + E +P+LE +I+ + REV P+ Sbjct: 593 ----------VEYEPDKELRDSEQIPFLECQACHQPGYLPSPEDQRTAIEAFLRREVLPY 642 Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670 VPDA+ D + +VGYEINFNR+FY+ + R L++I A+L VE + LL E Sbjct: 643 VPDAWYDPASV--------KVGYEINFNRYFYKPKALRPLEEIRADLLTVEREAEGLLAE 694 Query: 671 MAT 673 + Sbjct: 695 ILG 697 >gi|292490879|ref|YP_003526318.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4] gi|291579474|gb|ADE13931.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4] Length = 799 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 223/802 (27%), Positives = 355/802 (44%), Gaps = 156/802 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 L +FIW A+D L + + VILP +LRRL+ LEPT++AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKAAVLEEVRFQRKEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + ++ + +GY FYN S+++L L T T N+E Y++ +S N K I Sbjct: 66 KLTELEDSALQAASGYVFYNASKWTLKQLYQTATNNQQILLANVEEYLSGYSGNVKEIIG 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLI 163 F+ + + + +L + + F+ ++ + M ++E LI Sbjct: 126 KFNLKAQVRHMAAKDVLLDVLEKFTSPYINLTHEEAQDPEGNRLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 RRF E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RRFNEENNEEAGEHFTPREVIELMTHLVFDPVKDKL----PPVMTIYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + D + + +G+E+ ET+A+C + M+I+ NI+ GSTLS Sbjct: 242 QNFIKDEEGAIRASGDVYLYGKEINDETYAICKSDMMIKGNNP-------ANIRVGSTLS 294 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PK 330 D F G RF + LSNPP+GK W ++ ++ + RF L P+ Sbjct: 295 TDEFAGNRFDFMLSNPPYGKSWAGEQKYIKDGGE-VIDPRFKVQLKDYWGHVETVDAAPR 353 Query: 331 ISDGSMLFLMHLANKLELPPNGG--GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + +K++ P GG R A V + S LF G AGSGES IRR ++ENDL+E Sbjct: 354 SSDGQLLFLMEMISKMKAPQAGGLGSRIASVHNGSSLFTGDAGSGESNIRRHIIENDLLE 413 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AI+ LP +LF+ T I TY+W+LSN K E RRGK QLI+A+ L+ +R N G K + Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSNHKPEHRRGKAQLIDASRLYRKLRKNLGNKNCEFAPE 473 Query: 448 QRRQILDIYV--------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 R+I Y+ + G +++ D R FGY ++ + RP R + L Sbjct: 474 HIREITQTYLELASIDRPAGAEGIAAQVFDNRDFGYYKVAIERPDRRKAQFSTERIETLR 533 Query: 500 ADITW--------------------------------------------RKLSPLH---- 511 D +KL L Sbjct: 534 FDKALGEPMAWIYGQWGDRVYEKGTLAEHEKAILAWCEEQALNLNAKQRKKLLNLETWRK 593 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL----KVKASKSFIVAFINAFGRK 567 + + + +M I + + ++ K L VK S +NA + Sbjct: 594 HHTLVQMAEHLMAVIGTDEFNDFNRFKTRVDKALKALAKETGVKLGVSDKNQLLNAVSKY 653 Query: 568 DPRADPVTDVNGE------------------------------------WIPDTNLTEYE 591 D A+ V + + ++L + E Sbjct: 654 DENAEKVIKKVEKFSQDQLRTLLQRLGCEESELADFGYYATEKPDEYLTYESSSDLRDSE 713 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 +P + I YF EV PHV +A+I+ + ++GYEI+FN++FY++QP R ++ Sbjct: 714 TIPLKDDIHQYFKAEVKPHVSEAWINMDSV--------KIGYEISFNKYFYRHQPLRSME 765 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 ++ E+ +E Q L+ ++ Sbjct: 766 EVAREIIALEQQAEGLIADILG 787 >gi|258513231|ref|YP_003189487.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01] gi|256635134|dbj|BAI01108.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01] gi|256638189|dbj|BAI04156.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-03] gi|256641243|dbj|BAI07203.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-07] gi|256644298|dbj|BAI10251.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-22] gi|256647353|dbj|BAI13299.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-26] gi|256650406|dbj|BAI16345.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-32] gi|256653397|dbj|BAI19329.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656450|dbj|BAI22375.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-12] Length = 797 Score = 638 bits (1645), Expect = e-180, Method: Composition-based stats. Identities = 225/805 (27%), Positives = 360/805 (44%), Gaps = 155/805 (19%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58 S +SL +FIW+ A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 2 NQTSHSSLVSFIWRIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKDAVLEEVRYQ 61 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAK 112 G + +D E +GY F+NTS ++L L +T T N+E Y+ FSDN K Sbjct: 62 KEDIGVTELDDEPLKDASGYVFFNTSHWTLKKLYNTATNNQQILLANIEDYLDGFSDNVK 121 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNF---------SGIELHPDTV----PDRVMSNIY 159 I F+ + + + +L + + F + IE + M ++ Sbjct: 122 EIIGRFNLFEQMRHMAEKQVLLDVIEKFVSPWVNLTPNDIEDPEGNTLPGLSNLGMGYVF 181 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LIR+F E +E A + TPR+V+HL T L+ DP I T+YDP CG+GG Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIHLMTHLVFDPIKDRL----PQILTIYDPACGSGGM 237 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 LT+A N++ D + +G+E+ ET+A+C + M+I+ +NI+ G Sbjct: 238 LTEAQNYITDADGPFHAHGDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIRIG 290 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP------------- 326 STLS D F+ RF + LSNPP+GK W + ++ K RF Sbjct: 291 STLSTDEFSAHRFDFMLSNPPYGKSWNSEVKYIKD-GKGVIDPRFQVKLADYWGNVETMD 349 Query: 327 GLPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 P+ SDG +LFLM + +K++ G R A V + S LF G AGSGES IRR+++EN Sbjct: 350 ATPRSSDGQLLFLMEMISKMKPTSASPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIEN 409 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443 D+++ I+ LP +LF+ T I TY+W+LSN K E RRG+VQLI+A ++ +R N G K Sbjct: 410 DMLDTIIQLPNNLFYNTGITTYIWLLSNAKPEARRGRVQLIDANLMFRKLRKNLGDKNCE 469 Query: 444 INDDQRRQILDIYVSRE------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D+ +QI + +++ G ++ D FGY ++ + RP R Sbjct: 470 FSDEHIQQITEAFLNFAPVERQIDAAGDPEGIAVQVFDNADFGYHKVTIERPDRRRAAFS 529 Query: 492 KTGLARLEADITWRK------------------------------------LSPLHQSFW 515 LA L D + R+ L+ ++ Sbjct: 530 AERLAPLRFDKSLREPMEWLYDEHGDQVYQPGFLKEQAKQITAWCEEAGLTLNAKAKAKL 589 Query: 516 LD------------ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563 LD +M + + + + K K+K + A +NA Sbjct: 590 LDTRYWVKLRDLLATATQIMGDVGLEETDDFNAFRKVVNAAIKARKIKLGVTEKNAILNA 649 Query: 564 FGRKDPRADPVTDVNGE-----------------------------------WIPDTNLT 588 D A V + + L Sbjct: 650 VSWYDETAQKVIAKKHKLTGAEVEELTTHLGCAAEDLADFGWYRQKDGSYLTYESTAELR 709 Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 + E+V ++I YF+ EV PHV +A+I+ + ++GYEI+FN++FY+++P R Sbjct: 710 DAESVALKDNIHRYFLAEVKPHVEEAWINLDSV--------KIGYEISFNKYFYRHKPLR 761 Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673 L+++ ++ +E + L+ ++ Sbjct: 762 SLEEVTQDILALEEKADGLIADILG 786 >gi|259156577|gb|ACV96520.1| N-6 DNA methylase [Vibrio fluvialis Ind1] Length = 809 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 226/816 (27%), Positives = 359/816 (43%), Gaps = 172/816 (21%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 6 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYNTS+++L +L +T T N E Y+ FSDN K I E Sbjct: 66 QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ S I + +L + + F ++ + M ++E LI Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 351 Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + NK++ P G R A V + S LF G AG GES IRR+++END+++ Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K + Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I + Y++ E+ + S++ FGY ++ + RP R + + Sbjct: 472 HITEITETYLACEDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531 Query: 496 ARLEADI---------------------------------------------------TW 504 A L D Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSDKKKSFLKSIEKDILSWCEDNDISLNAK 591 Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 K L WL + + +M I + + ++ K +K S Sbjct: 592 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 651 Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580 A +NA D A V D GE Sbjct: 652 AILNAVSWYDETAKKVVKKVVKLSGEKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGE 711 Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 + +++L + E+VP +SI YF+ EV PHV +A+I+ + ++GYEI+F Sbjct: 712 YITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--------KIGYEISF 763 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 N++FY+++P R L+++ ++ +E + L+ ++ Sbjct: 764 NKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 799 >gi|113477872|ref|YP_723933.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101] gi|110168920|gb|ABG53460.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101] Length = 677 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 216/671 (32%), Positives = 333/671 (49%), Gaps = 59/671 (8%) Query: 11 LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-D 68 + +FIW A+D L + + VILP T++RRL+C LEPT++AV ++ + I D Sbjct: 9 IVSFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDCLLEPTKAAVLKENNFYENMEISD 68 Query: 69 LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + Y FYNTS ++L L + + NL Y+ FSDN + I F F + + Sbjct: 69 KSGLTEFTKYPFYNTSGFTLKKLLDEPRSIKENLIDYLNGFSDNVQEIINKFKFRNQLET 128 Query: 127 LEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRFGSEVSE 172 L + LY + + F+ +++ + + M ++E LIR+F E +E Sbjct: 129 LVEHKRLYALIQKFTDSDINLSPEPRKDKKGKVIQPGLSNLGMGYVFEELIRKFNEENNE 188 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TPRD++ L L+ P K + +YD CG+GG LT+A N + + + Sbjct: 189 EAGEHFTPRDIIKLMVNLIFMPVKDQIKNT---TYLVYDCACGSGGMLTEAENFLLELAT 245 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 ++ GQE+ PET+A+C A MLI+ E+D NI+ STL+ D F F Sbjct: 246 GMGKKVVIHLFGQEVNPETYAICQADMLIKVKETD-------NIKYASTLASDGFPDFTF 298 Query: 293 HYCLSNPPFGKKWEKDKDAV-EKEHKNGELGRFGPG--------LPKISDGSMLFLMHLA 343 + L+NPP+GK W+ D+D + K + RF +P+ SDG +LFL++ Sbjct: 299 DFMLANPPYGKSWKVDQDKILVGRKKEVKDNRFLVKHQGEELQLIPRSSDGQLLFLVNKL 358 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 +K++ G R AIV + S LF G AGSGES IRRW++END +E IV LP ++F+ T I Sbjct: 359 SKMKDSTKLGSRIAIVHNGSALFTGDAGSGESNIRRWIIENDWLECIVGLPLNMFYNTGI 418 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG 462 ATY+WI+SN+K+ ERRGKVQLI+ + + +R G K + + +I + ++ Sbjct: 419 ATYIWIISNKKSVERRGKVQLIDGREWYGKLRKSLGSKSCELRGEDIDRITEEFLDFSES 478 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 SR+ D FG+ +I V RPLR SF + + + L ++ + Sbjct: 479 DNSRIFDNEDFGFHKIVVERPLRFSFQVTAARVQEFGEKMG---------DDLLGVVDIL 529 Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE-- 580 + + + K K + F KD R + V + Sbjct: 530 RGLFGEEVQWDFNLVKRDFEKALKVEGWNLKKRDLDLIYQIFTEKDERGEAVILKQTKKG 589 Query: 581 --WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638 + D L + ENVP E+IQ+YF REV PHV DA+ID + GYEI+F Sbjct: 590 VVYQADAELRDTENVPLKENIQEYFEREVLPHVSDAWIDFDKVVR--------GYEISFT 641 Query: 639 RFFYQYQPSRK 649 ++FY++Q R Sbjct: 642 KYFYKFQKLRS 652 >gi|295135946|ref|YP_003586622.1| DNA methylase HsdM [Zunongwangia profunda SM-A87] gi|294983961|gb|ADF54426.1| putative DNA methylase HsdM [Zunongwangia profunda SM-A87] Length = 784 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 234/801 (29%), Positives = 370/801 (46%), Gaps = 151/801 (18%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 MT+ S + L FIW A+D L + + VILP +LRRL+ LEP++ V ++ Sbjct: 1 MTQN--SHSKLIAFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKKEVMDEV 58 Query: 60 L----AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109 G + ++ E AGY FYNTS+++L L T + N E YI FSD Sbjct: 59 QFQTVEAGFTELESEGLKTAAGYEFYNTSKWTLQLLKDTASNNQSILLANFEDYILGFSD 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--------PDTV-----PDRVMS 156 N K I F+ I + +L + + F+ ++ PD + M Sbjct: 119 NVKEIISKFNLVRQIKHMATKDVLLDVLEKFTSPRINLTPFEKEDPDGYKLPALSNLGMG 178 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIR+F E +E A + TPR+V+ L T L+ +P + T+YDP CG+ Sbjct: 179 YVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFEPVKHQL----PPVMTIYDPACGS 234 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT++ N + D + + G+E+ ET+A+C + M+I+ + +NI Sbjct: 235 GGMLTESQNFIKDEAGAIQAKGDVYLFGKEINDETYAICKSDMMIKGNDP-------QNI 287 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------- 326 + GSTLS D F+ K F + LSNPP+GK W ++ ++ K+ RF Sbjct: 288 RLGSTLSTDEFSRKNFDFMLSNPPYGKSWASEQKYIKD-GKDIIDPRFTIQLSNYWQETD 346 Query: 327 ---GLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 +P+ SDG +LFLM + +K++ G R A V + S LF G AGSGES IRR+L Sbjct: 347 TEKAIPRSSDGQLLFLMEMVSKMKNLKQSPLGSRIASVHNGSSLFTGDAGSGESNIRRYL 406 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440 +ENDL+EAIV LP +LF+ T I TY+W+LSN KT+ER+GKVQLI+A L+ +R N G+K Sbjct: 407 IENDLLEAIVQLPNNLFYNTGITTYIWLLSNNKTKERQGKVQLIDAQPLYQKLRKNLGQK 466 Query: 441 RRIINDDQRRQILDIYVS-----RENGKF--SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I +++ RE S++ + FGY ++ + RP R+ Sbjct: 467 NCEFTPEHITEITQTFLNSEAREREEDDQLASKIFNNTDFGYYKVTIERPKRLRSQFTLE 526 Query: 494 GLARLEADITWR----------------------------------------------KL 507 + L + K Sbjct: 527 AIESLRYYSQLQEPMEYAYKTFGKKVYTELPSIKTEILNWCEANDISLSSKKKAQLTAKK 586 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + F +D + + I + + + K L++K S + A ++A Sbjct: 587 TWEDAKFLVDTATKLYEAIGDAVFMDFNHFSKQVNKALKKLEIKLSNAQKKAILDAVSVY 646 Query: 568 DPRADPVTDV----NGE--------------------------------WIPDTNLTEYE 591 DP A+ V GE + +++L +YE Sbjct: 647 DPEAEKVIKTTKILKGEKLENLCAHLDCTPDQLSHFGYFPSGNKGTYTIYESESDLRDYE 706 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 NVP E++ DYF+REVS HV +A+ID ++GYEI+FN++FYQ++ R L Sbjct: 707 NVPLDETVYDYFLREVSTHVEEAWIDLDK--------TKIGYEISFNKYFYQHKALRPLD 758 Query: 652 DIDAELKGVEAQIATLLEEMA 672 +ID +++ +E + L+ ++ Sbjct: 759 EIDKDIRELETKSEGLIMDIL 779 >gi|300825350|ref|ZP_07105429.1| N-6 DNA Methylase [Escherichia coli MS 119-7] gi|300522185|gb|EFK43254.1| N-6 DNA Methylase [Escherichia coli MS 119-7] Length = 819 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 226/816 (27%), Positives = 358/816 (43%), Gaps = 172/816 (21%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 18 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 77 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYNTS+++L +L +T T N E Y+ FSDN K I E Sbjct: 78 QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 137 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ S I + +L + + F ++ + M ++E LI Sbjct: 138 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETIEDPDGNKMPALTNLGMGYVFEELI 197 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 198 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKEQL----PLTMTVYDPACGSGGMLTES 253 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 254 QNFIEEKYPND--SRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 304 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 305 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 363 Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + NK++ P G R A V + S LF G AG GES IRR+++END+++ Sbjct: 364 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 423 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+ +R N G K + Sbjct: 424 AIVQLPNNLFYNTGITTYIWVLSNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 483 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I D Y++ + + S++ FGY ++ + RP R + + Sbjct: 484 HITEITDTYLACVDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAI 543 Query: 496 ARLEADI---------------------------------------------------TW 504 A L D Sbjct: 544 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSDQKKSFLKSIEKDILSWCEDNDISLNAK 603 Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 K L WL + + +M I + + ++ K +K S Sbjct: 604 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 663 Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580 A ++A D A V D GE Sbjct: 664 AILHAVSWYDETAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYPVPSAEGGKKGE 723 Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 + +++L + E+VP +SI YF+ EV PHV +A+I+ + ++GYEI+F Sbjct: 724 YITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--------KIGYEISF 775 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 N++FY+++P R L+++ ++ +E + L+ ++ Sbjct: 776 NKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 811 >gi|158337899|ref|YP_001519075.1| type I restriction-modification system, M subunit [Acaryochloris marina MBIC11017] gi|158308140|gb|ABW29757.1| type I restriction-modification system, M subunit, putative [Acaryochloris marina MBIC11017] Length = 807 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 231/819 (28%), Positives = 364/819 (44%), Gaps = 169/819 (20%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59 S L +FIW A+D L + + VILP +LRRL+C LE T+ AV E+ Sbjct: 2 DAASQNKLISFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLEETKDAVMEEVRFQ 61 Query: 60 -LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAK 112 + G + ++ + +GY FYNTS+++L L T N ++Y+ FS+N K Sbjct: 62 RESVGLTELESGALKDASGYVFYNTSDWTLKRLVETASNNRQILEANFKAYLDGFSENVK 121 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-------------PDTVPDRVMSNIY 159 I + F I R+ +A +L + + F+ ++ + + M ++ Sbjct: 122 EIIDSFYLRDQIKRMVQADVLLDVLEKFTSPYINFSPTQGEDPDGRKLAGLSNLGMGYVF 181 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LIR+F E +E A + TPR+V+ L T LL P + +YD CG+GG Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIKLMTHLLFMPVKEQL----PPVMLIYDGACGSGGM 237 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 LT++ N ++D K + +G+E+ PET+ +C + M+I+ + +NI+ G Sbjct: 238 LTESQNFISDPEGGIKSDAQVYLYGKEVNPETYGICKSDMMIKG-------NSPENIKLG 290 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------------GP 326 STL+ D F G RF + L NPP+GK + D+ + K+ RF Sbjct: 291 STLAMDEFAGMRFDFMLENPPYGKSYAADQKHILD-GKDVLDERFLLPLKDFWDEESLEK 349 Query: 327 GLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 P+ SDG +LFLM + +K++ G R A V + S LF G AGSGES IRR+++EN Sbjct: 350 ATPRSSDGQLLFLMDMVSKMKPLDQSPAGSRIASVHNGSSLFTGDAGSGESNIRRYIIEN 409 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443 D +EAIV LP ++F+ T I+TY+W+LSN K ER+GKVQLI+ ++L+ +R N G K Sbjct: 410 DWLEAIVQLPQNMFYNTGISTYVWVLSNNKAPERQGKVQLIDRSELYRKLRKNLGAKNCE 469 Query: 444 INDDQRRQILDIYVSREN--------------GKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 +Q +I +Y+ R + S++ D + FG+ ++ V RPLR+ Sbjct: 470 FAPEQIEKITHLYLDRVHQPTLPPSEDRELPPPPISKVFDNQDFGFYKVTVERPLRLLAQ 529 Query: 490 LDKTGLARL---------------------------------------EADITWRKLSPL 510 +A L E +T + L Sbjct: 530 FTPERVATLRYVPVLAEVMEWAYGEWGDEIYTSLTDHKQKIEEYLEKEEISLTAKNRKAL 589 Query: 511 -------HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT----LKVKASKSFIVA 559 +Q + + + +M + W + ++ KT L K S S Sbjct: 590 FTAKTWENQRDLMQVAEQLMASVEQEVWHDFNDFAERVNDTLKTLARQLDSKLSASEKRQ 649 Query: 560 FINAFGRKDPRADPVTDV----NG--------------------------------EWIP 583 NA +D A V G E+ Sbjct: 650 IFNAVSWRDEAAARVIKKVHKLKGEKLAELLEHLGTTEEHLADFGYWPGETAGQWIEYET 709 Query: 584 DTNLTEYENVPYLES---------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634 D+ L + E+VP I YF+ EV PHV DA+I ++GYE Sbjct: 710 DSELRDTESVPLNYGQALERGTAQIHGYFLAEVRPHVEDAWIALD--------STKIGYE 761 Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 INFN++FYQ++P RKL+ + E+ +E + LL+ + + Sbjct: 762 INFNKYFYQHKPLRKLETVVEEILELEKKTEGLLKRLVS 800 >gi|238920395|ref|YP_002933910.1| hypothetical protein NT01EI_2505 [Edwardsiella ictaluri 93-146] gi|238869964|gb|ACR69675.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 802 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 222/809 (27%), Positives = 352/809 (43%), Gaps = 163/809 (20%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 6 HNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRFQQQEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYN S+++L +L + T N+ Y+ FSDN I Sbjct: 66 NAVELDEEPLKAASGYVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNVTEIVN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ + I + +L + + F ++ + M ++E LI Sbjct: 126 CFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPNDIEDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDQL----PLTMTIYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +A+ + + +G+E+ ET+A+C + M+IR + NI+ GSTLS Sbjct: 242 QGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRGNDP-------ANIKVGSTLS 294 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------------GL 328 D F+ RF + LSNPP+GK W ++ ++ ++ RF Sbjct: 295 TDEFSHMRFDFMLSNPPYGKSWASEQKHIKDGNE-VIDSRFKVKLADYWGVVAPKDCDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P G R A V + S LF G AGSGES IRR+L+END+ Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSGESNIRRYLIENDM 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+L+N K R+GKVQLI+A+ L+ +R N G+K ++ Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELS 473 Query: 446 DDQRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I ++ N + S++ FGY ++ V RP R Sbjct: 474 PEHIEEITQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSE 533 Query: 494 GLARLEADITW----------------------------------------RKLSPLHQS 513 L L D + K QS Sbjct: 534 RLNALRFDKSLHEVMAHCFAEYGEQVYQEGGLTRHSKPILEWCEKNEISLNNKAKEKLQS 593 Query: 514 --------FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 D +M++I + + ++ K K+K S + A NA Sbjct: 594 STFWCAARTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKLSVTEKNALFNAVS 653 Query: 566 RKDPRA--------------------------------------DPVTDVNGE---WIPD 584 D A GE + Sbjct: 654 WYDETAAKVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESS 713 Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 ++L + E+VP +SI YF+ EV PHV +A+++ E ++GYE++FN++FY++ Sbjct: 714 SDLRDSESVPLTQSIYQYFLDEVKPHVAEAWLN--------MESVKIGYEVSFNKYFYRH 765 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 + R L+ + E+ +E Q L+ ++ Sbjct: 766 KSLRSLETVAQEILTLEQQADGLIAQILG 794 >gi|259910158|ref|YP_002650514.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96] gi|224965780|emb|CAX57312.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96] gi|283480263|emb|CAY76179.1| type I restriction-modification system DNA methylase [Erwinia pyrifoliae DSM 12163] Length = 793 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 219/802 (27%), Positives = 354/802 (44%), Gaps = 158/802 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEP + AV + Sbjct: 6 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVKFQKEEL 65 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D + +GY FYNTS+++L+ L T N E Y+ FSDN K I Sbjct: 66 RATELDDAPLMAASGYVFYNTSKWTLNLLFKAATNNQQILLANFEEYLLGFSDNVKEIVA 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIE-------------LHPDTVPDRVMSNIYEHLI 163 F+ + I + +L + + F + + M ++E LI Sbjct: 126 CFNLQAQIRHMASKQVLLDVVEKFVSPYINLTHKAVEDPEGYTMPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLVFDPVKDKL----PLTMTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFIEAKYPS--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F +RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 293 TDEFAAERFDFMLSNPPYGKSWASEQKYIKD-GGDVIDPRFKVRLQDYSGKEETVDATPR 351 Query: 331 ISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + +K++ P + G R A V + S LF G AG GES IRR+L+END+++ Sbjct: 352 SSDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K ++R+GKVQLI+A+ L+ +R N G K + Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I Y++ + S++ FGY ++ V RP R + + Sbjct: 472 HIAEIAQTYLACAGVERKLDANHDAVGIASKVFSNDDFGYYKVTVERPDRRKARFTREAI 531 Query: 496 ARLEADITWRK------------------------------------LSPLHQSFWLDI- 518 L D + L+ +S LD+ Sbjct: 532 QPLRFDKQLAEVMAWLYGEHGDKIYEKGFLASVEKATLAWCAERDISLNTKAKSKLLDVK 591 Query: 519 -----------LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + +M + + + + ++ K K+K S + A +NA Sbjct: 592 NWLSLQRVYHTAERLMATLGGGEFDDFNLFKAQVEQVLKAEKIKLSAAEKNAIVNAVSWY 651 Query: 568 DPRADPVTD---------------------------------VNGEW-IPDT--NLTEYE 591 D A V + E+ I D+ +L + E Sbjct: 652 DETAARVINKTVKLNGDKLQDLLARLECEAEDLPDFGFYPSGKKDEYIIYDSSADLRDTE 711 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 +VP +SI YF+ EV PHV +A+I+ + ++GYEI+FN++FY +P R L+ Sbjct: 712 SVPLKQSIYQYFLDEVKPHVAEAWINLDSV--------KIGYEISFNKYFYHPKPLRSLE 763 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 ++ ++ +E Q L+ ++ Sbjct: 764 EVAQDIIKLEQQSEGLIAQILG 785 >gi|188535438|ref|YP_001909235.1| type I restriction-modification system, methyltransferase subunit [Erwinia tasmaniensis Et1/99] gi|188030480|emb|CAO98374.1| type I restriction-modification system, methyltransferase subunit [Erwinia tasmaniensis Et1/99] Length = 793 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 219/802 (27%), Positives = 360/802 (44%), Gaps = 158/802 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP + AV + Sbjct: 6 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116 + +D + +GY FYNTS+++L++L T T + N E Y+ FSDN K I Sbjct: 66 QATELDDAPLMAASGYVFYNTSKWTLNSLFKTATNSQQILLANFEEYLLGFSDNVKEIVA 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIE-------------LHPDTVPDRVMSNIYEHLI 163 F+ + I + +L + + F + + M ++E LI Sbjct: 126 CFNLQAQIRHMAAKQVLLDVVEKFVSPYINLTHKAVDDPDGYSMPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLVFDPVKDKL----PLTMTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFIEAKYPS--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F +RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 293 TDEFAAQRFDFMLSNPPYGKSWATEQKYIKD-GGDVIDPRFKVKLRDYFGKEETVDATPR 351 Query: 331 ISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + +K++ P + G R A V + S LF G AG GES IRR+L+END+++ Sbjct: 352 SSDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K+++R+GKVQLI+A+ L+ +R N G K + Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKSQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I Y++ + S++ FGY ++ + RP R + + Sbjct: 472 HIAEIAQTYLACTGAERALDANHDAVGIASKVFSNDDFGYYKVTIERPDRRKARFSREAI 531 Query: 496 ARLEADITWRK------------------------------------LSPLHQSFWLDI- 518 L D + L+ +S LD+ Sbjct: 532 RPLRFDKQLAEVMAWLYAEHGDKVYEKGFLASVEKDTQGWCAERDISLNTKARSKLLDVK 591 Query: 519 -----------LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + +M I + + ++ K K+K S + A +NA Sbjct: 592 NWLSLQTVYHCAERLMATIGGEEFDDFNRFKAQVEQVLKAEKIKLSAAEKNAILNAVSWY 651 Query: 568 DPRADPVTD---------------------------------VNGEWI-PDT--NLTEYE 591 D A V + E+I D+ +L + E Sbjct: 652 DESAAKVINKTVKLNGDKLQDLLERLECEAADLPDFGFYPSGKKDEYITYDSSADLRDTE 711 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 ++P +SI YF+ EV PHV +A+I+ + ++GYEI+FN++FY+++P R L+ Sbjct: 712 SIPLKQSIYQYFLDEVKPHVAEAWINLDSV--------KIGYEISFNKYFYRHKPLRSLE 763 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 ++ ++ +E Q L+ ++ Sbjct: 764 EVAQDIIKLEQQSEGLIAQILG 785 >gi|282600127|ref|ZP_05973122.2| type I restriction-modification system, M subunit [Providencia rustigianii DSM 4541] gi|282566525|gb|EFB72060.1| type I restriction-modification system, M subunit [Providencia rustigianii DSM 4541] Length = 821 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 226/816 (27%), Positives = 357/816 (43%), Gaps = 172/816 (21%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 18 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 77 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYNTS+++L +L +T T N E Y+ FSDN K I E Sbjct: 78 QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 137 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ S I + +L + + F ++ + M ++E LI Sbjct: 138 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETAEDPDGNKMPALTNLGMGYVFEELI 197 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 198 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 253 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 254 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 304 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 305 TDEFAASRFDFMLSNPPYGKSWASEQKYIKD-GSDVIDPRFKVSLKDYWGNFEVVDATPR 363 Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + NK++ P G R A V + S LF G AG GES IRR+++END+++ Sbjct: 364 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 423 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K + Sbjct: 424 AIVQLPNNLFYNTGITTYIWVLNNNKPEVRKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 483 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I D Y++ ++ + S++ FGY ++ + RP R + + Sbjct: 484 HITEITDTYLACKDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAI 543 Query: 496 ARLEAD---------------------------------------------------ITW 504 A L D Sbjct: 544 APLRFDRQLSEVMEYVYAEHGERVYEKTGYGSDQKKSFLKSIEKDILSWCEENDISLNAK 603 Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 K L WL + + +M I + + ++ K +K S Sbjct: 604 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKNHAIKLSAPEKN 663 Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580 A +NA D A V D GE Sbjct: 664 AILNAVSWYDETAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYPLPATEGGKKGE 723 Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 + +++L + E+VP +SI YF EV PHV +A+I+ + ++GYEI+F Sbjct: 724 YITYETNSDLRDTESVPLKQSIYQYFKGEVKPHVDEAWINLDTV--------KIGYEISF 775 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 N++FY ++P R L+++ ++ +E + L+ ++ Sbjct: 776 NKYFYMHKPLRSLEEVATDIINLEQKSEGLIAQILG 811 >gi|120597917|ref|YP_962491.1| N-6 DNA methylase [Shewanella sp. W3-18-1] gi|120558010|gb|ABM23937.1| N-6 DNA methylase [Shewanella sp. W3-18-1] Length = 807 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 226/816 (27%), Positives = 356/816 (43%), Gaps = 172/816 (21%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 6 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYNTS+++L +L +T T N E Y+ FSDN K I E Sbjct: 66 QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ S I + +L + + F ++ + M ++E LI Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 351 Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + NK++ P G R A V + S LF G AG GES IRR+++END+++ Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPA 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I D Y++ + S++ FGY ++ + RP R + + Sbjct: 472 HITEITDTYLACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531 Query: 496 ARLEADI---------------------------------------------------TW 504 A L D Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGTEKKKSFLKSIEKDILSWCEDNDISLNAK 591 Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 K L WL + + +M I + + ++ K +K S Sbjct: 592 AKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 651 Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580 A +NA D A V D GE Sbjct: 652 AILNAVSWYDETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGE 711 Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 + +++L + E+VP +SI YF+ EV PHV +A+I+ + ++GYEI+F Sbjct: 712 FITYETNSDLRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTV--------KIGYEISF 763 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 N++FY+++P R L+++ ++ +E + L+ ++ Sbjct: 764 NKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 799 >gi|259156157|gb|ACV96105.1| N-6 DNA methylase [Providencia alcalifaciens Ban1] Length = 809 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 227/816 (27%), Positives = 358/816 (43%), Gaps = 172/816 (21%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 6 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYNTS+++L +L +T T N E Y+ FSDN K I E Sbjct: 66 QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ S I + +L + + F ++ + M ++E LI Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 351 Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + NK++ P G R A V + S LF G AG GES IRR+++END+++ Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K + Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I D Y++ E+ + S++ FGY ++ + RP R + + Sbjct: 472 HITEITDTYLACEDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531 Query: 496 ARLEADI---------------------------------------------------TW 504 A L D Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSEKKKSFLKSVEKDILSWCEENDISLNAK 591 Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 K L WL + + +M I + + ++ K +K S Sbjct: 592 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 651 Query: 559 AFINAFGRKDPRA------------DPVTD--------------------------VNGE 580 A +NA D A D +TD GE Sbjct: 652 AILNAVSWYDETAKKVVKKVVKLSSDKLTDLLERYECEVADLPDFGYYPVPATEGGKKGE 711 Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 + ++L + E+VP +SI YF+ EV PH+ +A+I+ + ++GYEI+F Sbjct: 712 YITYETSSDLRDTESVPLKQSIHQYFLDEVKPHIDEAWINLDTV--------KIGYEISF 763 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 N++FY ++P R L+++ ++ +E + L+ + Sbjct: 764 NKYFYLHKPLRSLEEVATDIINLEQKAEGLISLILG 799 >gi|163754486|ref|ZP_02161608.1| restriction/modification methyltransferase [Kordia algicida OT-1] gi|161325427|gb|EDP96754.1| restriction/modification methyltransferase [Kordia algicida OT-1] Length = 737 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 239/758 (31%), Positives = 360/758 (47%), Gaps = 109/758 (14%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + +FIW A+D L DF + +ILPFT+LRRL+ L PT+ V + Y Sbjct: 1 MNNKV--HNQIVSFIWSIADDVLRDDFVRGKYRDIILPFTVLRRLDALLVPTKEDVLKGY 58 Query: 60 LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTL--------------GSTNTRNNLESYI 104 + ID +GY F+NTS ++ S N +NLE Y+ Sbjct: 59 KFLKENKIDDLSGLTHQSGYPFFNTSGFTFSNSSLFDSNHPYTALTNDPANIDSNLEEYL 118 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP------------- 151 FS+N + I + F+ + +L++ GL + + + E++ V Sbjct: 119 DGFSENIQQIIDRFEIRKQLPKLKENGLTPLLIEKLASKEINLSPVEIKNTKGEVLPPLT 178 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + M ++E LIR+F E +E A + TPR+++ L T L+ P K + ++YD Sbjct: 179 NLGMGYVFEELIRKFNEENNEEAGEHFTPREIIQLMTHLIFLPIKDKLKVAQ---YSIYD 235 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 CG+GG LT+A + + +GQE+ PET AVC + MLI+ + Sbjct: 236 SACGSGGMLTEAEKYAKRITKN---KTSFSLYGQEVNPETWAVCNSDMLIKGEKDY---- 288 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE----HKNGELGRFGPG 327 +I GSTLS D F K F + LSNPP+GK W+KD+D++ E ++ + RF G Sbjct: 289 ---HIAYGSTLSNDSFQFKEFDFMLSNPPYGKAWKKDEDSIVIERGKTNELIKDPRFQTG 345 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LPKISDG +LFL ++ +K++ G R A V + S LF G AG GESEIRR+L+E+DL+ Sbjct: 346 LPKISDGQLLFLSNMVHKMKKGTELGSRIASVHNGSSLFTGNAGQGESEIRRYLIESDLV 405 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND 446 E IVALP +F+ T I TY+WILSNRK + R+GK+QLINA +L T + RN G+K + Sbjct: 406 ECIVALPEKIFYNTGIPTYIWILSNRKEKRRQGKIQLINALELSTPLRRNLGEKNCEMQP 465 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE------- 499 +QI D+Y++ + S++ D FGY + + RPLR + L Sbjct: 466 SHIKQIEDLYLNFKETNISKVFDNEDFGYYDVTIERPLRYKSQFTNEAIENLRYLNTIAD 525 Query: 500 ----------------------------------------ADITWRKLSPLHQSFWLDIL 519 + + Q + I Sbjct: 526 EMKWMYAQFGDNLYEGISKEIKQKTELWLKDEDIKISTANKKKLFNNATWKTQKELMRIA 585 Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579 K + I + + KTL K S + + A KD A+PV Sbjct: 586 KDIFSNIGDKLFDNFNLFNKEVDKVLKTLSYKVSATNKKKVLLAVSWKDEEAEPVIKKKA 645 Query: 580 E-----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634 + + D++L + E VP E+I+DYF REV P+VPDA+I+ I + GY Sbjct: 646 KDGTIIYEADSDLRDTEIVPLNENIEDYFNREVIPYVPDAWINYDKITK--------GYM 697 Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 I+F R+FY Y P + L+ I E+ +E + +LEE+ Sbjct: 698 ISFTRYFYNYSPPKDLELIKQEILDLEKETEGILEEII 735 >gi|229520260|ref|ZP_04409686.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80] gi|167832524|gb|ACA01834.1| DNA methylase HsdM [Vibrio cholerae] gi|229342626|gb|EEO07618.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80] Length = 793 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 219/802 (27%), Positives = 362/802 (45%), Gaps = 158/802 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D +GY FYNTS+++L TL ST T N E Y+ FS+N K I E Sbjct: 66 NEIELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-------------TVPDRVMSNIYEHLI 163 F+ + I + +L + + F ++ + + M ++E LI Sbjct: 126 CFNLKAQIRHMAGKNVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT+ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDNL----PLSITVYDPACGSGGMLTET 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N V + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFVEEKYPA--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F+ RF + LSNPP+GK W ++ + KE K GRF +P+ Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351 Query: 331 ISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + K++ G R A V + S LF G AGSGES IRR+++END+++ Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRYIIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K + + Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I+ Y+ ++ + +++ + FGY ++ + RP R + + Sbjct: 472 HIAEIVSTYLENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRADLI 531 Query: 496 ARLEADITWRKLSP---------------------------------------------- 509 L + + R++ Sbjct: 532 EPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDISLNKAAKTKLLDTK 591 Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + Q ++ + ++I + + + + E +L +K S A ++A Sbjct: 592 NWMKQRTLVNAASQLHKKIGDEVYNDFNQFKQLVDAELTSLGLKLSAPEKKAILDAVSWY 651 Query: 568 DPRADPVTDV------------------------------NGE------WIPDTNLTEYE 591 D A+ V G + ++L + E Sbjct: 652 DENAEKVIKKVAKLKQDKLDDLLENYECELEDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 +VP +SI YF+ EV PHV +A+++ E ++GYEI+FN++FY+++P R + Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRHKPLRSMD 763 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 ++ E+ +E + L+ ++ Sbjct: 764 EVAKEIIALEQKAEGLIADILG 785 >gi|15641772|ref|NP_231404.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585796|ref|ZP_01675590.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80] gi|121727690|ref|ZP_01680785.1| DNA methylase HsdM, putative [Vibrio cholerae V52] gi|147674983|ref|YP_001217310.1| putative DNA methylase HsdM [Vibrio cholerae O395] gi|153817851|ref|ZP_01970518.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457] gi|153821147|ref|ZP_01973814.1| DNA methylase HsdM, putative [Vibrio cholerae B33] gi|227081914|ref|YP_002810465.1| putative DNA methylase HsdM [Vibrio cholerae M66-2] gi|229508128|ref|ZP_04397633.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286] gi|229511633|ref|ZP_04401112.1| hypothetical protein VCE_003042 [Vibrio cholerae B33] gi|229518772|ref|ZP_04408215.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9] gi|229607689|ref|YP_002878337.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236] gi|255744816|ref|ZP_05418766.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholera CIRS 101] gi|262161901|ref|ZP_06030919.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae INDRE 91/1] gi|262169769|ref|ZP_06037460.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae RC27] gi|298498161|ref|ZP_07007968.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656291|gb|AAF94918.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549934|gb|EAX59952.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80] gi|121629987|gb|EAX62395.1| DNA methylase HsdM, putative [Vibrio cholerae V52] gi|126511671|gb|EAZ74265.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457] gi|126521343|gb|EAZ78566.1| DNA methylase HsdM, putative [Vibrio cholerae B33] gi|146316866|gb|ABQ21405.1| putative DNA methylase HsdM [Vibrio cholerae O395] gi|227009802|gb|ACP06014.1| putative DNA methylase HsdM [Vibrio cholerae M66-2] gi|227013669|gb|ACP09879.1| putative DNA methylase HsdM [Vibrio cholerae O395] gi|229343461|gb|EEO08436.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9] gi|229351598|gb|EEO16539.1| hypothetical protein VCE_003042 [Vibrio cholerae B33] gi|229355633|gb|EEO20554.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286] gi|229370344|gb|ACQ60767.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236] gi|255737287|gb|EET92682.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholera CIRS 101] gi|262022003|gb|EEY40713.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae RC27] gi|262028633|gb|EEY47288.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae INDRE 91/1] gi|297542494|gb|EFH78544.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 793 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 219/802 (27%), Positives = 363/802 (45%), Gaps = 158/802 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D +GY FYNTS+++L TL ST T N E Y+ FS+N K I E Sbjct: 66 NEIELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-------------TVPDRVMSNIYEHLI 163 F+ + I + +L + + F ++ + + M ++E LI Sbjct: 126 CFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT+ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDNL----PLSITVYDPACGSGGMLTET 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N V + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFVEEKYPA--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F+ RF + LSNPP+GK W ++ + KE K GRF +P+ Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351 Query: 331 ISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + K++ G R A V + S LF G AGSGES IRR+++END+++ Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K + + Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I+ Y+ ++ + +++ + FGY ++ + RP R + + Sbjct: 472 HIAEIVSTYLENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRADLI 531 Query: 496 ARLEADITWRKLSP---------------------------------------------- 509 L + + R++ Sbjct: 532 EPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDISLNKAAKTKLLDTK 591 Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + Q +++ + ++I + + + + E +L +K S A ++A Sbjct: 592 NWIKQRTLVNVASQLHKKIGDEVYNDFNQFKQLVDAELTSLGLKLSAPEKKAILDAVSWY 651 Query: 568 DPRADPVTDV------------------------------NGE------WIPDTNLTEYE 591 D A+ V G + ++L + E Sbjct: 652 DENAEKVIKKVAKLKQDKLDELLENYECELQDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 +VP +SI YF+ EV PHV +A+I+ E ++GYEI+FN++FY+++P R + Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWINL--------ESVKIGYEISFNKYFYRHKPLRSMD 763 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 ++ ++ +E + L+ ++ Sbjct: 764 EVAGDIIALEQKAEGLIADILG 785 >gi|187779697|ref|ZP_02996170.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC 15579] gi|187773322|gb|EDU37124.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC 15579] Length = 704 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 217/723 (30%), Positives = 345/723 (47%), Gaps = 80/723 (11%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + NFIW A+D L + + VILP T++RRL+ LEPT+ AV + + I Sbjct: 3 NQIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEPTKEAVLQMKKKLDKAGI 62 Query: 68 --DLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKAIFEDFDFS 121 + VAG +F NTS + L L + + +Y+ FS N + I E F F Sbjct: 63 VNQTSALCSVAGQAFCNTSPFMLKDLKSRVKQQQLKLDFITYLDGFSPNVQEILEKFKFR 122 Query: 122 STIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRFG 167 + I + +A +L + + F ++ + + M +I+E LI +F Sbjct: 123 NQIDTMIEADILGSVIEKFVDPRINLSVEPVLDDNGEVKLPALENHTMGSIFEELIHKFN 182 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 E +E A + TPR VV L + P K+ +YD CGTGG LT A + Sbjct: 183 EENNEQAGEHFTPRHVVELMADITFLPVVDKIKDG---SYLVYDGACGTGGMLTIAEKRL 239 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + + + +GQE+ PET+A+ A ML++ + NI GSTLS D F Sbjct: 240 QELAKENNKQISINLYGQEINPETYAITKADMLLKG-----EGKQADNIAYGSTLSNDKF 294 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------GLPKISDGSMLF 338 + F + LSNPP+GK W+ D + + + ++ RF +P+ SDG +LF Sbjct: 295 STTNFDFMLSNPPYGKSWKTDLNKLGGK-EHITDPRFAVTHNNESDFKMIPRSSDGQLLF 353 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L + +K++ G R V + S LF G AG GES +RR+++END +EAI+ALP ++F Sbjct: 354 LANKISKMKQNTELGSRIVEVHNGSSLFTGDAGQGESNLRRYIIENDWLEAIIALPENMF 413 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYV 457 + T IAT++W+++NRK + R GKVQLI+ATDL + +R N+G K + + R+ I DI + Sbjct: 414 YNTGIATFIWVVANRKPKHRMGKVQLIDATDLKSPLRKNQGNKNCELTPEIRKVITDILI 473 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 + E S++ D + FGY +I V +PLR+S L K + +K + L +D Sbjct: 474 NFEENDKSKIFDNKEFGYWKITVEKPLRLSVDLSKENIEEFSKICEEQKDTEL-----MD 528 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 I+ + + + A L +K S + N + D A+ V Sbjct: 529 IIYTLGDKFQHKKLTNYNLFLDELKKIASNLNIKLSSKRLKLVKNNLAKVDEVAEKVIKR 588 Query: 578 -------------------------NGEWIPDTNLTEYENVPY--LESIQDYFVREVSPH 610 E+ D+NL + E +P I+ +F EV P Sbjct: 589 IIKPGKVEKNPLYGLFNENIEDEYHIVEYEADSNLRDTEEIPLLHEGGIEKFFKDEVLPF 648 Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670 DA+I DK ++GY+I+F+++FY+ R L +I A++K +E++ LL E Sbjct: 649 NKDAWI--------DKSKTQIGYKISFSKYFYKPIKLRDLNEIKADIKILESETDGLLNE 700 Query: 671 MAT 673 + Sbjct: 701 IIG 703 >gi|298529186|ref|ZP_07016589.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1] gi|298510622|gb|EFI34525.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1] Length = 786 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 234/786 (29%), Positives = 358/786 (45%), Gaps = 145/786 (18%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 G +ANFIW A+D L + + VILP T++RRL+ LEPT+ V + Sbjct: 2 ENGQLNWIANFIWNIADDVLRDVYVRGKYRDVILPMTVIRRLDACLEPTKQDVLKMSEQL 61 Query: 63 GGSNI--DLESFVKVAG----YSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAK 112 + + + + + AG ++FYN S ++L L + + + E+Y+ FS N + Sbjct: 62 DKAGVANKVGALSRAAGADANHAFYNDSPFTLRDLQSRGKAQQLKADFETYLDGFSPNVQ 121 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNI 158 I E F F + I L A L + + F I L P + + M I Sbjct: 122 EILEKFKFRNQIPTLVDADALGPLIEKFLNPDINLCPHPVRDVEGNVRLPGLDNHAMGTI 181 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E LIRRF E +E A + TPRDVV L L+ P + +YD CGTGG Sbjct: 182 FEELIRRFNEENNEEAGEHFTPRDVVKLMANLIFWPIADDIR---SATYRVYDGACGTGG 238 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 LT A + + S + GQE+ PET+A+ A +L++ ++N++ Sbjct: 239 MLTVAEDTLQGLASSRGKNVSIHLFGQEVNPETYAISKADLLLKG-----EGQGAENMKF 293 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPK 330 GSTLS+D F F + LSNPP+GK W+ D D + + K+ RF + + Sbjct: 294 GSTLSRDAFPSGEFDFMLSNPPYGKSWKMDLDRMGGK-KDMSDHRFVVQHDGDELSLITR 352 Query: 331 ISDGSMLFLMHLANKLELPPN---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 SDG +LFL++ K+ P G R A V + S LF G AGSGES IRRW++END + Sbjct: 353 SSDGQLLFLVNKLTKMVEPTERSPLGSRIAEVHNGSSLFTGDAGSGESNIRRWIIENDWL 412 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446 EAI+ALP ++F+ T IATY+W+L+N K EER+GKVQLI+ATD++ +R N G K +++ Sbjct: 413 EAIIALPLNMFYNTGIATYIWVLTNAKPEERKGKVQLIDATDIYQPLRKNMGAKNCELSE 472 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +Q +QI +++++ E + S++ FGY +I+V RPLR+ L + + L Sbjct: 473 EQIKQICEMFLAFEETEQSKIFPNAAFGYWKIRVERPLRLHSQLTRKAIQGLRYASGDED 532 Query: 507 LSPLHQSFWLDIL--------KPMMQQIYPYG------------------------WAES 534 + + D + K + Q ++ +G + Sbjct: 533 IRQALHEEFGDTIFENFSSVRKQVEQTLHDWGGNGDEDSDGDEDSDTPKRTVIPEKKRKK 592 Query: 535 FVKESIKSNEAK--------------------------------TLKVKASKSFIVAFIN 562 +K + K L +K S N Sbjct: 593 LLKADTWKRDKKLYDAARALRDELGEDVFTNHNIFRDAVADGLKKLGIKLSAGEQKIIFN 652 Query: 563 AFGRKDPRADPVTDV------------NG-------------EWIPDTNLTEYENVPYLE 597 A + A PV +G E+ PD+ L + E VP LE Sbjct: 653 AMSWRVEDAPPVIKKAHKPGKAEVDPLHGLYANPEGDPGLVLEYEPDSELRDSEQVPLLE 712 Query: 598 --SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655 I+ +F REV PHVP A+I D+ ++GYEI+F R FY+ R L++I Sbjct: 713 EGGIEAFFRREVLPHVPGAWI--------DESATKIGYEISFTRHFYKPPELRPLEEIKV 764 Query: 656 ELKGVE 661 +L ++ Sbjct: 765 DLLALQ 770 >gi|254228172|ref|ZP_04921601.1| Type I restriction-modification system methyltransferase subunit [Vibrio sp. Ex25] gi|262394005|ref|YP_003285859.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. Ex25] gi|151939245|gb|EDN58074.1| Type I restriction-modification system methyltransferase subunit [Vibrio sp. Ex25] gi|262337599|gb|ACY51394.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. Ex25] Length = 794 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 217/802 (27%), Positives = 366/802 (45%), Gaps = 158/802 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D +GY FYNTS+++L TL ST T N E Y+ FSDN K I E Sbjct: 66 NETELDDAPLCAASGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSDNVKEIVE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-------------TVPDRVMSNIYEHLI 163 F+ + I + +L + + F ++ + + M ++E LI Sbjct: 126 CFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPTVKEDPEGNKLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT+ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDEL----PLSITVYDPACGSGGMLTET 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N V + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFVEEKYPA--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------QNIRVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330 D F+ +RF + LSNPP+GK W ++ ++ K+ GRF +P+ Sbjct: 293 TDEFSSERFDFMLSNPPYGKSWASEQKHIKD-GKDVVDGRFKVKLKDYWGVESEQDAIPR 351 Query: 331 ISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + K++ P G R A V + S LF G AGSGES IRR+++END+++ Sbjct: 352 SSDGQLLFLMEMVTKMKSPQVSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K + + Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPESRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 +I+ Y+ ++ + +++ + FGY ++ + RP R + + Sbjct: 472 HIAKIVSTYLDNKSVERAIDEKGDSVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRSDLI 531 Query: 496 ARLEADITWRKLSP---------------------------------------------- 509 L + + R++ Sbjct: 532 EPLRFEKSLREVMEYLYVEYGEKVYDAGFVKGVEKEITKWCEENDISLNKAAKTKLLDTK 591 Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + Q ++ + +I + + + + E K+L +K + + A ++A Sbjct: 592 NWIKQRTLVNAASQLHSKIGDEVYNDFNQFKQLVDAELKSLGLKLAATEKKAILDAVSWY 651 Query: 568 DPRADPVTDV------------------------------NGE------WIPDTNLTEYE 591 + A+ V G + ++L + E Sbjct: 652 NENAEKVIKKVAKLKQDKLDELLESYECELQDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 +VP +SI YF+ EV PHV +A+++ E ++GYEI+FN++FY+++P R + Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRHKPLRSMD 763 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 ++ ++ +E + L+ ++ Sbjct: 764 EVAKDIIALEQKAEGLISDILG 785 >gi|145633686|ref|ZP_01789412.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 3655] gi|145635503|ref|ZP_01791203.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittAA] gi|229845498|ref|ZP_04465627.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 6P18H1] gi|144985446|gb|EDJ92267.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 3655] gi|145267268|gb|EDK07272.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittAA] gi|229811601|gb|EEP47301.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 6P18H1] Length = 793 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 230/805 (28%), Positives = 352/805 (43%), Gaps = 158/805 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ GY FYNTS+++L +L T + N E Y+ FS N + I + Sbjct: 66 AFTELDDLPLKKITGYVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIIK 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F S I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPVLTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP K I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKSQIPAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++ENDL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 + L D K L Sbjct: 534 NIEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + K K+ S + A NA Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFDDFNQFKQAVECRLKAGKIPLSATEKKAVFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 + A V GE + ++L + Sbjct: 654 WYNENAAKVIAKTLKLKPNELDALCQRYQCQADGLADFGYYATGKAGEYIQYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV PH+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMATE 674 L ++ ++ +E Q L+ E+ E Sbjct: 766 LAEVAQDILALEKQADGLISEILGE 790 >gi|217979674|ref|YP_002363821.1| N-6 DNA methylase [Methylocella silvestris BL2] gi|217505050|gb|ACK52459.1| N-6 DNA methylase [Methylocella silvestris BL2] Length = 647 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 219/693 (31%), Positives = 333/693 (48%), Gaps = 86/693 (12%) Query: 17 KNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI--DLESFV 73 A+D L + + VILP +LRRL+ LEPT++AV + I + Sbjct: 2 GIADDALRDLYVRGKYRDVILPMMVLRRLDAVLEPTKAAVLSMKDNLDKAGITNQDAALR 61 Query: 74 KVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 + AG +FYNTS + L L + + + E+++ FS N + I ++F+F + + +L K Sbjct: 62 QAAGQAFYNTSRFKLRDLRNRASQSQLKADFEAFLDGFSPNVQEILDNFEFRNQLPKLSK 121 Query: 130 AGLLYKICKNF--SGIELHPD------------TVPDRVMSNIYEHLIRRFGSEVSEGAE 175 A +L + + F S I L P + + M I+E L+RRF +E A Sbjct: 122 ADVLGTLIEKFLDSSINLGPKPVLNGDGSVKHPGLDNHAMGTIFEELVRRFNEANNEEAG 181 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPRD V L L+ P + LYD CGTGG LT A + + H Sbjct: 182 EHWTPRDAVKLMAKLIFVPIADQIQSG---TYLLYDGACGTGGMLTVAEETLNELAEKHG 238 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRF 292 GQE+ ET+A+ A +L++ + + NI G STL+ D F K F Sbjct: 239 KQVSTHLFGQEINGETYAIAKADLLLKG-----EGEEADNIVGGPEWSTLANDAFPSKEF 293 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---GPG------LPKISDGSMLFLMHLA 343 + LSNPP+GK W+ D++ + + RF G + + SDG MLFL ++ Sbjct: 294 DFMLSNPPYGKSWKSDQERMGGK-SGMRDPRFVIEHAGDAEYSLVTRSSDGQMLFLANML 352 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 +K++ G R A V + S LF G AGSGES +RRW++END EAIVALP ++F+ T I Sbjct: 353 SKMKHNTPLGSRIAEVHNGSSLFTGDAGSGESNVRRWIIENDWCEAIVALPLNMFYNTGI 412 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462 ATY+W+LSNRK RRGKVQLI+AT + +R N GKK + D +IL +++ + Sbjct: 413 ATYVWVLSNRKPGNRRGKVQLIDATAWFRPLRKNLGKKNCELADADIERILQAFIAFQPT 472 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + SR+ D FGY ++ V RPLR I A + L ++ + P+ Sbjct: 473 EQSRIFDNAEFGYSKVTVERPLRARGIDTTRAYAP----KEIKALKDDGRTA--EDGAPV 526 Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582 +++I+ G E+ + E+ Sbjct: 527 IRRIHKPGKVEADPLRGLFPLTI------------------------DGKRCV---VEYE 559 Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 PD++L + E VP E I+ + REV PH PDA+ID+ +GYE++F R+ Sbjct: 560 PDSDLRDTETVPLKEPGGIEAFIRREVLPHAPDAWIDEAK--------TTIGYEVSFTRY 611 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 FY+ QP R L I A++ +E + L+ ++ Sbjct: 612 FYKPQPLRPLDAIRADILALERETDGLMADIIG 644 >gi|310778851|ref|YP_003967184.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926] gi|309748174|gb|ADO82836.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926] Length = 996 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 231/749 (30%), Positives = 363/749 (48%), Gaps = 104/749 (13%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + ++IW A+D L F + VILPFT+LRR++ LE ++ V E F +N Sbjct: 262 HNKIVSYIWSIADDVLRDIFVRGKYRDVILPFTVLRRIDILLEESKEKVLEMNKFFEENN 321 Query: 67 IDLE-SFVKVAGYSFYNTSEYSLST--------------LGSTNTRNNLESYIASFSDNA 111 I+ + K+ GY FYNTS +++ +NLE Y+ FS N Sbjct: 322 INDKSGLEKITGYPFYNTSPFTMGKNSLKDSEYPFVSLLSDPDKIDSNLEEYLDGFSPNI 381 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNI 158 + I F + + ++ AG+ + + + ++ + M + Sbjct: 382 QEIISKFKVRNQLETMQDAGITFGLIDKLTSGSINLSPYEVKNSKGEILPALTNLGMGYV 441 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E LIR+F E +E A + TPR+++ L T ++ +P + KE G ++YDP CG+GG Sbjct: 442 FEELIRKFNEENNEEAGEHFTPREIIKLMTHIIFEPIKDILKEREGARFSIYDPACGSGG 501 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 LT+A + + I GQE+ PET A+C MLI+ + + NI Sbjct: 502 MLTEAEDFALKITDN---KCIFSLFGQEVNPETWAICTGDMLIKG-------EKASNIGY 551 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH-----KNGELGRFGPGLPKISD 333 GSTLS D F G +F + LSNPP+GK W+ D DA+ + + + RF GLP ISD Sbjct: 552 GSTLSNDEFKGHKFDFILSNPPYGKSWKNDVDAIVENRGKKGKEIIKDPRFKVGLPTISD 611 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 G +LFL+++ +K++ G R A V + S LF G AG GESEIR+ +LENDL+E I+AL Sbjct: 612 GQLLFLVNMISKMKNDTELGSRIASVHNGSSLFTGDAGQGESEIRKMILENDLLECIIAL 671 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452 T++F+ T I TY+WILSNRK E R+GKVQLINA D++T +R N G+K + Q I Sbjct: 672 STNIFYNTGIPTYIWILSNRKEERRKGKVQLINAIDIYTPLRKNLGQKNCELTKTQIDSI 731 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-- 510 IY+ + + S++ D FGY +I V RPLR+ + + L + T + Sbjct: 732 TKIYLDFKKTETSKIFDNEDFGYNKIIVERPLRLKAKITNEAIESLRYEKTIIDEAKWIY 791 Query: 511 --------------------------------------------HQSFWLDILKPMMQQI 526 Q + I + ++++I Sbjct: 792 RKYGDKVYDGLKDVKKDIENWIEKNEIKISPANKKKIFDVNVWKSQEELMKITEQLLEEI 851 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD---VNGE--W 581 + + + + L +K K + NA KD +PV +G + Sbjct: 852 GEIEFDNFNTFKDLIGDTLNKLDIKIGKKDLDLIFNAITWKDEEGEPVIKKVEKDGTIIY 911 Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641 D++L + E+VP E I +YF REV ++PDA+I D+ + GY I+F R+F Sbjct: 912 EADSDLRDSESVPLNEDIHEYFEREVLNYIPDAWI--------DESKTQKGYSISFTRYF 963 Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEE 670 Y + P R L+ I +E++ ++ + ++EE Sbjct: 964 YNFTPPRSLEAIASEIEKLQEETEGIMEE 992 >gi|54308076|ref|YP_129096.1| putative DNA methylase HsdM [Photobacterium profundum SS9] gi|46912502|emb|CAG19294.1| putative DNA methylase HsdM [Photobacterium profundum SS9] Length = 793 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 224/799 (28%), Positives = 357/799 (44%), Gaps = 161/799 (20%) Query: 16 WKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAFGGSNIDLE 70 W A+D L + + VILP +LRRL+ LE T+ + E+ + D Sbjct: 4 WSIADDCLRDVYVRGKYRDVILPMVVLRRLDSLLEATKKEILEEVAFQRDEMESTEFDSA 63 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFEDFDFSSTI 124 + GY FYNTS+++L + +T + N+E Y+ FSDN K I + F S I Sbjct: 64 PLEAITGYVFYNTSKWTLKQITATASNNQQILLANVEEYLNGFSDNVKEIIKCFKLQSQI 123 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLIRRFGSEVS 171 + + +L + + F+ ++ + M ++E LIR+F + + Sbjct: 124 RHMAEKDILLDVLEKFTSPNINLTPNVVEDPDGNKLPALSNLGMGYVFEELIRKFNEDNN 183 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 E A + TPR+V+ L T L+ DP + TLYDP CG+GG LT+A N + D Sbjct: 184 EEAGEHFTPREVIELMTHLVFDPLKGNL----PPVITLYDPACGSGGMLTEAQNFIKDPE 239 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 K + G+E+ ET+A+C + M+I+ D +NI+ GSTLS D F GK Sbjct: 240 GKIKATSDVYLFGKEINDETYAICKSDMMIKG-------DNPENIRVGSTLSTDEFAGKT 292 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPKISDGSMLF 338 FHYCLSNPP+GK W ++ ++ K RF +P+ SDG +LF Sbjct: 293 FHYCLSNPPYGKSWASEQKYIKD-GKEVIDSRFKVKLKDYWGVEDTYEAIPRSSDGQLLF 351 Query: 339 LMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LM + +K++ NG G R A V + S LF G AG GES IRR+++END++EAIV LP + Sbjct: 352 LMEMVSKMKSVNNGVEGSRIASVHNGSSLFTGDAGGGESNIRRYIIENDMLEAIVQLPNN 411 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455 LF+ T I TY+W+LSN K ++R+G+VQLI+A L+ +R N G K + + R+I Sbjct: 412 LFYNTGITTYIWLLSNNKLDKRKGQVQLIDANPLYRKLRKNLGDKNCEFSPEHIREITKT 471 Query: 456 YVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 Y+ + +++ D FGY ++ + P R + + L D Sbjct: 472 YLDMTKVERTLDEKGDPQGISTKVFDNDDFGYYKVNIECPDRRNAQFSSERIETLRFDKA 531 Query: 504 WRK--------------------------LSPLHQSFW---------------------- 515 R+ L+ + Sbjct: 532 LREPMEYIYNTYGEDAYKAEILAKESKAILAWCEEKEISLNTKNRNKLLDVATWTRLGDL 591 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 +DI +M+ I + + ++ E K+ K+K S A +NA A+ V Sbjct: 592 IDIANTLMKAIGTDIYNDYNQFKATVDAELKSRKIKLSAPEKNAILNAVSWYHENAEKVI 651 Query: 576 DVN--------------------------------------GE---WIPDTNLTEYENVP 594 GE + +++L + E++P Sbjct: 652 KKKLKLTGSKLDELLTSCDCDEHELGDFGYYLIAKEDGGKAGEYITYESNSDLRDAESIP 711 Query: 595 YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654 +SI YF+ EV PHV D++I+ ++GYEI+FN+ FYQ++P R + D+ Sbjct: 712 LKQSIYQYFLDEVKPHVSDSWINID--------STKIGYEISFNKHFYQHKPLRSIDDVA 763 Query: 655 AELKGVEAQIATLLEEMAT 673 ++ +E + L+ E+ Sbjct: 764 KDIIALEQKAEGLMAEILG 782 >gi|304310801|ref|YP_003810399.1| Type I restriction-modification system DNA methylase [gamma proteobacterium HdN1] gi|301796534|emb|CBL44743.1| Type I restriction-modification system DNA methylase [gamma proteobacterium HdN1] Length = 808 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 222/815 (27%), Positives = 357/815 (43%), Gaps = 169/815 (20%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRYQKEEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D E + +GY FYN S+++L++L +T T N + Y+ FS N + I E Sbjct: 66 QATELDEEPLKEASGYVFYNVSKWTLTSLHNTATNNRQILLANFDEYLNGFSANVQEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELH--------PDTV-----PDRVMSNIYEHLI 163 F+ S I + +L + + F +++ PD + M ++E LI Sbjct: 126 RFELKSKIQHMANKDVLLDVVEKFISPKINLTPVAAEDPDGYKLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDSI----PLTLTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 N + + K + +G+E+ ET+A+C + M+I+ +NI+ GS Sbjct: 242 QNFIEEKYPADPSAKSQRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGS 294 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------G 327 TLS D F RF + LSNPP+GK W ++ ++ + RF Sbjct: 295 TLSTDEFASLRFDFMLSNPPYGKSWASEQKYIKD-GSDVIDPRFKVKLKDYWGNIEECDA 353 Query: 328 LPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 P+ SDG +LFLM + +K++ P G G R A V + S LF G AG GES IRR+++END Sbjct: 354 TPRSSDGQLLFLMEMVSKMKDPGAGTNGSRIASVHNGSSLFTGDAGGGESNIRRYIIEND 413 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444 +++AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWLLNNNKPESRKGKVQLIDASLLYRKLRKNLGNKNCEF 473 Query: 445 NDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLRPLRMS 487 + QI Y+ + S++ FGY ++ + RP R Sbjct: 474 APEHIEQITRAYLDCAAIERELDGSLPEGMGDPIGIASQVFRNEDFGYYKVTIERPDRRK 533 Query: 488 FILDKTGLARLEADITWRKLSP-------------------------------------- 509 +A L D ++ Sbjct: 534 AQFTAERIAGLRFDKQLSEVMEHLYAEYGDKLYEKGFLKSIEKNILAWCEDNDISLNAKA 593 Query: 510 ----------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559 L + + +M I + + + + K LKVK S + A Sbjct: 594 KTKLLDVKHWLALKAVYETAQALMAAIGKDEFDDFNLFKDQVDAGLKALKVKLSATEKNA 653 Query: 560 FINAFGRKDPRADPVTDVNGE------------------------------------WIP 583 +NA D A V + + Sbjct: 654 ILNAVSWYDESAAKVIKKVVKLSGDKLDEVLERYGCTQAQLPDFGFYPTNKKNEYITYET 713 Query: 584 DTNLTEYENVPYL-----ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638 +L + E+V L +SI YF+ EV PHV +++I+ + ++GYEI+FN Sbjct: 714 SADLRDSESVSLLKDDEPQSIHQYFLDEVKPHVEESWINLDSV--------KIGYEISFN 765 Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 ++FY+++P R L+D+ ++ +E + L+ ++ Sbjct: 766 KYFYRHKPLRSLEDVAKDIINLEQKAEGLIAQILG 800 >gi|311694469|gb|ADP97342.1| type I restriction-modification system, methyltransferase subunit [marine bacterium HP15] Length = 807 Score = 623 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 226/816 (27%), Positives = 356/816 (43%), Gaps = 172/816 (21%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ L PT+ AV E+ Sbjct: 6 HNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLMPTKEAVLEEVRFQKEEM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D +GY FYN S+++L++L +T T N E Y+ FS N + I E Sbjct: 66 DATELDPAPLKAASGYVFYNVSKWTLTSLYNTATNNRQILLANFEEYLKGFSPNVQEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV-----------PDRVMSNIYEHLI 163 F+ S I + +L + + F I L P + M ++E LI Sbjct: 126 CFELKSKIQHMAHKDVLLDVVEKFVSPKINLTPKDALDPDGYKLPGLSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDDL----PLTLTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + + +G+E+ ET+A+C + M+I+ +NI+ GSTLS Sbjct: 242 QNFIEEKYPSD--NRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330 D F RF + LSNPP+GK W ++ ++ + RF P+ Sbjct: 293 TDEFASDRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKIQLKDYWGNEEDCDATPR 351 Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFLM + +K++ P G G R A V + S LF G AG GES IRR+L+END +E Sbjct: 352 SSDGQLLFLMEMVSKMKDPATGSKGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWLE 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AIV LP +LF+ T I TY+W+L+N K RRGKVQLI+A+ L+ +R N G K D Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPANRRGKVQLIDASLLYRKLRKNLGNKNCEFAPD 471 Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 QI Y+ + S++ FGY ++ + RP R + + Sbjct: 472 HIEQITRTYLDCTAIERELDANNDPVGIASQVFRNEDFGYHKVTIERPDRRKAQFSEERI 531 Query: 496 ARLEADITWRK---------------------------------------------LSPL 510 A L D + L+ Sbjct: 532 AGLRFDKQISEVMEHLYAEHGDKVYDSTGHGKDNKQSFLKSIEKPVMAWCDDNDISLNTK 591 Query: 511 HQSFWLDILK------------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 ++ LD+ + +M I + + + E K K+K S + Sbjct: 592 AKTKLLDVKRWASLKAIYETARELMAAIGQDEFDDFNQFKKQVDTELKARKLKLSATEKN 651 Query: 559 AFINAFGRKDPRADPVT------------------DVNGEWIPD---------------- 584 A +NA D A+ V D + E +PD Sbjct: 652 AILNAISWYDETAEKVVKKVVKLNGDKLDELLHRYDCSAEQLPDYGLYPTGKANEYITFE 711 Query: 585 --TNLTEYENVPY-----LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637 ++L + E++ + I YF+ EV PHV +A+I+ ++GYEI+F Sbjct: 712 SSSDLRDSESIALLKDGEKQGIHGYFLAEVKPHVEEAWINLD--------STKIGYEISF 763 Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 N++FY+++P R L+++ ++ +E + L+ ++ Sbjct: 764 NKYFYRHKPLRSLEEVAQDIISLEQKAEGLIAQILG 799 >gi|260581979|ref|ZP_05849774.1| type I restriction-modification system, M subunit [Haemophilus influenzae NT127] gi|260094869|gb|EEW78762.1| type I restriction-modification system, M subunit [Haemophilus influenzae NT127] Length = 790 Score = 623 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 228/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP+++AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++E DL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 +A L D K L Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + K K+ S + A NA Sbjct: 594 VKTWEKAAALFQTALKLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 D A V GE + ++L + Sbjct: 654 WYDENAAKVIAKTLKLKPNELDALCRRYQCQADELADFGYYATGKAGEYLQYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV PH+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L D+ ++ +E Q L+ E+ Sbjct: 766 LADVAQDILALEKQTDGLISEIL 788 >gi|225076788|ref|ZP_03719987.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens NRL30031/H210] gi|224951886|gb|EEG33095.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens NRL30031/H210] Length = 793 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 225/805 (27%), Positives = 351/805 (43%), Gaps = 158/805 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEVRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N + I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPDGNKLPALSNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP K T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKNQIPAAITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + ++ + G+E+ ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLPESQVERSIFLFGKEINDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G+ F + LSNPP+GK W D+ ++ K RF Sbjct: 295 LATDSFQGEHFDFMLSNPPYGKNWSNDQAYIKD-GKEVIDSRFKVSLPDYWGNEETLNAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P SDG +LFLM + +K++ P + G R A V + S LF G AGSGES IRR ++ENDL Sbjct: 354 PSASDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP LF+ T+I TY+W+LSN K E R+GKVQLI+A+ L+ +R G+K Sbjct: 414 LEAIVQLPNKLFYNTDITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKKLGEKNCEFA 473 Query: 446 DDQRRQILDIYVSR------ENGKF------SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ +G+ S++ D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFSAKARETDGQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAQ 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 +A L D K L Sbjct: 534 NIASLRFDKALFEPMQYLYQQHGEQIYNAEYLAKTEPEISAWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + K K+ S + A NA Sbjct: 594 VKTWEKAAALFQTASTLLEHFGSTQFDDFNQFKQAVEGRLKAEKISLSATEKKAIFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 + A V GE + ++L + Sbjct: 654 WYNESAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYLQYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV PH+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMATE 674 L ++ ++ +E Q L+ E+ E Sbjct: 766 LAEVAQDILALEKQADGLISEILGE 790 >gi|309812882|ref|ZP_07706614.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185] gi|308433160|gb|EFP57060.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185] Length = 650 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 226/686 (32%), Positives = 356/686 (51%), Gaps = 74/686 (10%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 F+WK A+ L G F+ ++G+V+LP +LRR++ L T+ AV K F Sbjct: 11 VAFVWKVADTLRGTFRQHEYGQVMLPLLVLRRMDAVLVDTKPAVLAKAKTFETIAAPQAM 70 Query: 72 -FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128 KVAG FYN S ++ ++L NL +YI S +A + E ++ IAR++ Sbjct: 71 MLKKVAGQRFYNISRFTFTSLLSDDKALAENLSNYIRGLSSDAYVVMEAYNLDDKIARMD 130 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +AG+LY++ +F+ ++L P V + M I+E L+RRF +E A + TPR+V+ L Sbjct: 131 RAGILYRVLADFADLDLRPSVVSNEAMGYIFEDLLRRFSEMSNETAGEHYTPREVIRLMV 190 Query: 189 ALLLDPDDAL-FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 LL+ + E+P +RT+YDP GTGG L AM H+ ++ +GQEL Sbjct: 191 ELLVGGEAHRELVENPLPVRTVYDPAAGTGGMLMTAMEHMRALNPETEVK----VYGQEL 246 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 ET A+ + ++++ ++ K ++ G++L++D F + F + L+NPP+G W Sbjct: 247 NDETWAIAQSDLMMQDIDP-------KQMRNGNSLTQDAFGAEHFDFILANPPYGVNWAG 299 Query: 308 DKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 +++EH K G GRFG GLP+ SDGS+LFL H+ +K++ G R IVLS SPLF Sbjct: 300 YAAPIKEEHAKQGMNGRFGAGLPRSSDGSLLFLQHMLSKMKPT---GSRVGIVLSGSPLF 356 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 +G A SGES IR+W+LEND +E IVALP +F+ T I+TY+WIL+N K + RG V+L++ Sbjct: 357 SGAADSGESRIRQWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKADADRGLVKLVD 416 Query: 427 ATDLWTSIRN-EGKKRRIINDDQRRQILDIYV----SRENGKFSRMLDYRTFGYRRIKVL 481 A + T +R G KR+ + D +I +Y ++ ++L FG++RI V Sbjct: 417 ARAMGTKMRKSLGDKRKELTADAIAEIGRLYGGALDEVDDDARIKVLPREAFGFQRITVE 476 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 RP+R + + +A D+ P++ Q F E Sbjct: 477 RPMRRRWEVTTEAVA----------------DAPFDVFAPLVGQ--------RFQTEKAL 512 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI-- 599 EA + K + + F A DP A VT G+ PD +L + ENVP + Sbjct: 513 LAEADAIT-KLTAAQRKKFATACAVADPDAPIVT-KKGQAEPDPDLRDAENVPLPDGWFS 570 Query: 600 --------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645 + + E+ P+VPDA+ID ++G EI F R FY Y+ Sbjct: 571 LDPDARETALRETAEAHLESEIRPYVPDAWIDHTK--------TKIGVEIPFTRQFYVYE 622 Query: 646 PSRKLQDIDAELKGVEAQIATLLEEM 671 P R +++I AE++ +E QI ++++ Sbjct: 623 PPRPVEEIAAEIRDLETQIQGWMKDL 648 >gi|148827246|ref|YP_001291999.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittGG] gi|148718488|gb|ABQ99615.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittGG] Length = 790 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 227/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNEETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++ENDL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 +A L D K L Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGEQIYNAGFLAKTEPEISTWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + K K+ S + A NA Sbjct: 594 VKTWEKAAALFQTASKLLEHFGSTQFDDFNQFKQAVEGRLKAEKIPLSATEKKAIFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 D A V GE + ++L + Sbjct: 654 WYDENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYIQYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV PH+ +A+++ E ++GYEI+FN++FY+++ R Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKSLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L+++ ++ +E Q L+ E+ Sbjct: 766 LEEVTQDILALEKQADGLISEIL 788 >gi|256826062|ref|YP_003150022.1| type I restriction-modification system methyltransferase subunit [Kytococcus sedentarius DSM 20547] gi|256689455|gb|ACV07257.1| type I restriction-modification system methyltransferase subunit [Kytococcus sedentarius DSM 20547] Length = 644 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 218/686 (31%), Positives = 344/686 (50%), Gaps = 79/686 (11%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-DLE 70 F+W+ A+ L G FK ++G V+LP +LRR++ AL T++ V + + + Sbjct: 10 VAFVWRIADRLRGTFKQHEYGSVMLPLLVLRRMDAALADTKAEVVAQAKGWDTIGPGQDK 69 Query: 71 SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128 + + FYNTS + + L + N R NL YI S A + E +DF I R++ Sbjct: 70 LLKRTSRRPFYNTSPLTFAGLLNDADNLRENLAKYIRHLSPEAARVIEAYDFDPKIERMD 129 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + +LY + +F+ ++L V + M I+E L+R+F +E A + TPR+V+ L Sbjct: 130 RDDILYGVIADFADLDLRTSVVSNEAMGYIFEELLRKFSEMSNETAGEHYTPREVISLMV 189 Query: 189 ALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 LLL E+P +RT+YDP GTGG L A++ V + + GQEL Sbjct: 190 QLLLTGKTHTELMENPRPVRTVYDPAAGTGGMLVGALDGVQGLNGNA----TVTVSGQEL 245 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 ET A+ + +++ + + + +G++L++D F ++F + L+NPP+G W+K Sbjct: 246 NDETWAIAQSDLMMLGI-------GPERMARGNSLTQDAFPTEQFDFMLANPPYGVDWKK 298 Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 ++ E +N G GRFG G P++SDGS LFL H+ +K++ GG R IVLS SPLF Sbjct: 299 YAGPIKDEAENLGFSGRFGAGTPRVSDGSFLFLQHMISKMKP---GGSRIGIVLSGSPLF 355 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 +G+AGSGESEIR W+LEND +E IVALP +F+ T I+TY+WIL+N K RGKV+LI+ Sbjct: 356 SGQAGSGESEIRGWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKDGASRGKVRLID 415 Query: 427 ATDLWTSIRN-EGKKRRIINDDQRRQILDIYV----SRENGKFSRMLDYRTFGYRRIKVL 481 A ++ T +R G KR+ + + R+I ++Y + R+++ FGY+RI V Sbjct: 416 AREMGTKMRKSLGDKRKELKPEAIREITNLYGGALDEFADDPRVRVMNRNDFGYQRITVE 475 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 RP+R + + E I ++++ Sbjct: 476 RPMRRHWEVTSELAEAHEG-------------------------IGHLVGRRFETEKALS 510 Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI-- 599 + A A + D A PV GE PD +L + EN+P + Sbjct: 511 NELA-----DLDTKERKAVLKGAAIADEEA-PVILKKGEPAPDPDLRDAENIPLPDGWMD 564 Query: 600 --------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645 + + E+ P+VPDA++ D +VGYEI F R FY Y+ Sbjct: 565 LPENRRFSTLDEAAEKHLHTEIHPYVPDAWL--------DYSKTKVGYEIPFTRQFYVYE 616 Query: 646 PSRKLQDIDAELKGVEAQIATLLEEM 671 P R + +I AE+K +E QI ++ + Sbjct: 617 PPRPVDEIAAEIKELEEQIQGWMKGL 642 >gi|319775045|ref|YP_004137533.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae F3047] gi|329123047|ref|ZP_08251618.1| type I restriction-modification system DNA-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|317449636|emb|CBY85842.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae F3047] gi|327471978|gb|EGF17418.1| type I restriction-modification system DNA-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 790 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 227/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDTEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++ENDL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 +A L D K L Sbjct: 534 NIASLRFDKALFEPMQYLYRQYGGQVYNAGFLTQTEQEITAWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + KT K+ S + A NA Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFDDFNQFKQAVECRLKTEKIPLSATEKKAIFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 D + V GE + ++L + Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCQRYQCQADGLADFGYYTTGKAGEYILYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV H+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L ++ ++ +E Q L+ E+ Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788 >gi|148825621|ref|YP_001290374.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittEE] gi|148715781|gb|ABQ97991.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittEE] gi|309972765|gb|ADO95966.1| Probable type I restriction modification system, methylase component HsdM2 [Haemophilus influenzae R2846] Length = 790 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 226/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ GY FYNTS+++L +L T N E Y+ FS N + I + Sbjct: 66 AFTELDDLPLKKITGYVFYNTSKWTLKSLYQTAGNTPQHMLANFEEYLDGFSTNVQEIIK 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGI-------------ELHPDTVPDRVMSNIYEHLI 163 F S I + +L + + F + + + M ++E LI Sbjct: 126 CFKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEDNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++E DL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFA 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 +A L D K L Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGEQVYNAEYLAKTEPEISTWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + KT K+ S + A NA Sbjct: 594 VKTWEKAATLFQTASTLLEHFGSTQFDDFNQFKQAVEGRLKTEKIPLSATEKKAIFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 + A V GE + ++L + Sbjct: 654 WYNENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYIQYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV PH+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNILDYFKAEVQPHISEAWLN--------MENVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L ++ ++ +E Q L+ E+ Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788 >gi|145629011|ref|ZP_01784810.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 22.1-21] gi|145639606|ref|ZP_01795210.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittII] gi|144978514|gb|EDJ88237.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 22.1-21] gi|145271397|gb|EDK11310.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae PittII] gi|162949228|gb|ABY21301.1| probable type I secretion system methylase [Haemophilus influenzae] gi|309750478|gb|ADO80462.1| Probable type I restriction modification system, methylase component HsdM2 [Haemophilus influenzae R2866] Length = 790 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 226/803 (28%), Positives = 346/803 (43%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++ENDL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVKLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S+M D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQMFDNQDFGYYKVTIERPDRRSAQFTAE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 + L D K L Sbjct: 534 NIEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + K K+ S + A NA Sbjct: 594 VKTWEKAAALFQTASKLLKHFGEQQFHDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 + A V GE + ++L + Sbjct: 654 WYNENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV H+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L ++ ++ +E Q L+ E+ Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788 >gi|114047282|ref|YP_737832.1| N-6 DNA methylase [Shewanella sp. MR-7] gi|113888724|gb|ABI42775.1| N-6 DNA methylase [Shewanella sp. MR-7] Length = 829 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 231/829 (27%), Positives = 364/829 (43%), Gaps = 183/829 (22%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 L +FIW A+D L + + VILP +LRRL+ LEPT+ AV E+ Sbjct: 6 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65 Query: 66 ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 +D E +GY FYNTS+++L +L +T T N E Y+ FSDN K I E Sbjct: 66 QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 F+ S I + +L + + F ++ + M ++E LI Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 N + + + K + +G+E+ ET+A+C + M+I+ +NI+ GS Sbjct: 242 QNFIEEKYPNDPSVKTKRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGS 294 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------G 327 TLS D F RF + LSNPP+GK W ++ ++ + RF Sbjct: 295 TLSTDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDA 353 Query: 328 LPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 P+ SDG +LFLM + NK++ P G R A V + S LF G AG GES IRR+++END Sbjct: 354 TPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIEND 413 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444 +++AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEF 473 Query: 445 NDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLRPLRMS 487 + +I D Y++ + + S++ FGY ++ + RP R Sbjct: 474 APEHITEITDTYLACVDVERALDATAPEGMGDPVGIASKVFSNEDFGYYKVTIERPDRRR 533 Query: 488 FILDKTGLARLEADITWRK----------------------------------------- 506 + +A L D + Sbjct: 534 AKFTQEAIAPLRFDKQLSEVMEYVYAEHGERVYEKTAPSNNKEGDEKKRSFLKSIEKDIL 593 Query: 507 ---------LSPLHQSFWLD-----ILKPMMQQ----IYPYGWAESFVKESIKSNEAKTL 548 L+ ++ LD LK +++ + G E S K+ K+L Sbjct: 594 SWCEENDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSL 653 Query: 549 K---VKASKSFIVAFINAFGRKDPRAD-----------------------PVTD------ 576 K +K S A +N D A V D Sbjct: 654 KTHAIKLSAPEKNAILNVVSWYDESAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGY 713 Query: 577 ---------VNGE---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEK 624 E + +++L + E+VP +SI YF+ EV PHV +A+I+ + Sbjct: 714 YPVPTTEGGKKNEFITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--- 770 Query: 625 DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 ++GYEI+FN++FY+++P R L D+ ++ +E + L+ ++ Sbjct: 771 -----KIGYEISFNKYFYRHKPLRSLIDVATDIINLEQKAEGLIAQILG 814 >gi|313895998|ref|ZP_07829552.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975423|gb|EFR40884.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 662 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 217/702 (30%), Positives = 338/702 (48%), Gaps = 80/702 (11%) Query: 6 GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + ++ +FIW A++ L ++ + VILP T++RRL+ LE T+ AV F Sbjct: 4 QTHNAIVSFIWGIADECLRDIYQSGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFED 63 Query: 65 S--NIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDF 118 + ++ E+ AG +FYN S + L L + + + +Y+ FS N + I + F Sbjct: 64 AHVDVPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQSLKADFVAYLNGFSPNVREILDKF 123 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV----------------PDRVMSNIYEHL 162 F + I +EKAG+L + + F+ +++ + M I+E L Sbjct: 124 KFDTQIDTMEKAGILGAVIEKFTASDINLSPYPIYKDAEKKEVLHPGLDNHSMGTIFEEL 183 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 IR+F ++ A + TPRDVV L L+ P + + YD GTGG LT Sbjct: 184 IRKFNEANNQQAGEHWTPRDVVELMADLIFVPIRHELLD---ATYSCYDGASGTGGMLTV 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A + + H + +GQE+ PET+A+C A ML++ + NI+ GSTL Sbjct: 241 AQARLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKG-----DGAEAANIEYGSTL 295 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL---------PKISD 333 S+D F + LSNPP+GK W+ D + + + E RF L P++SD Sbjct: 296 SEDHHAKMHFDFMLSNPPYGKNWKADATKMGGK-SDIEDPRFRVTLADGERLDAFPRVSD 354 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 G +LFL++ K++ G R A V + S LF G AGSGES RR+++ENDL+EAI+AL Sbjct: 355 GQLLFLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIAL 414 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452 P ++F+ T I TY+WILSN+K + R+GK+QLI+AT + +R N GKK + R +I Sbjct: 415 PENMFYNTGIGTYIWILSNKKEKRRKGKIQLIDATAIKAPLRKNLGKKNCEFTPELRAEI 474 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 L ++++ E S++ + FGY + V RPLR+ +K A L L Sbjct: 475 LRVFLAYEESDVSKIFAGKEFGYWSVTVERPLRLRITREKELPAGL-----------LRS 523 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 + + + W AK +K + + KDP A Sbjct: 524 AEERAAYQRALDTTPLDDWTAF----------AKATGLKP--ALLKKLRPHITVKDPAAQ 571 Query: 573 PVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630 PV D+ L + ENVP I + EV P+ PDAYI D++ Sbjct: 572 PVAGA-----ADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAYI--------DEKKTE 618 Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +GYEI+F ++FY+ RK+ +I +++ VE LL + Sbjct: 619 IGYEISFTKYFYRPLELRKIDEIVHDIRVVEDASNRLLNAVL 660 >gi|320529369|ref|ZP_08030457.1| N-6 DNA Methylase [Selenomonas artemidis F0399] gi|320138335|gb|EFW30229.1| N-6 DNA Methylase [Selenomonas artemidis F0399] Length = 662 Score = 616 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 213/702 (30%), Positives = 339/702 (48%), Gaps = 80/702 (11%) Query: 6 GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + ++ +FIW A++ L ++ + VILP T++RRL+ LE T+ AV F Sbjct: 4 QTHNAIVSFIWGIADECLRDIYQRGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFED 63 Query: 65 S--NIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDF 118 + ++ E+ AG +FYN S + L L N + + +Y+ FS N + I + F Sbjct: 64 AHVDVPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQNLKADFIAYLNGFSPNVQEILDKF 123 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV----------------PDRVMSNIYEHL 162 F + I ++ AG+L + + F+ +++ + M I+E L Sbjct: 124 KFRTQIDTMDDAGILGAVIEKFTASDINLSPYPIYKDAEKKDVLHPGLDNHSMGTIFEEL 183 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 IR+F + +E A + TPRDVV L L+ P + + YD GTGG LT Sbjct: 184 IRKFNEDNNEEAGEHWTPRDVVELMADLIFVPIRHELLD---ATYSCYDGASGTGGILTV 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A + + H + +GQE+ PET+A+C A ML++ + NI+ GSTL Sbjct: 241 AQARLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKG-----DGAEAGNIKYGSTL 295 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL---------PKISD 333 S+D F + LSNPP+GK W+ D + + + + RF L P++SD Sbjct: 296 SEDHHAKMYFDFMLSNPPYGKNWKADATKMGGK-SDIKDPRFRVTLADGERLAAFPRVSD 354 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 G +LFL++ K++ G R A V + S LF G AGSGES RR+++ENDL+EAI+AL Sbjct: 355 GQLLFLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIAL 414 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452 P ++F+ T I TY+WILSN+K + R+GK+QLI+AT + + +R N GKK + R +I Sbjct: 415 PENMFYNTGIGTYIWILSNKKEKRRKGKIQLIDATAMKSPLRKNLGKKNCEFTPELRAEI 474 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 L I+++ E S++ + + FG+ + V RPLR+ + R + + Sbjct: 475 LRIFLAYEESDVSKIFEGKEFGFWSVTVERPLRL-------RIERERTLPAGLFGTAEER 527 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 + + L + AK +K + + KDP A Sbjct: 528 AAYQRALDTAPLDDWT--------------AFAKATGLKP--ALLKKLRPHITVKDPAAQ 571 Query: 573 PVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630 PV D+ L + ENVP I + EV P+ PDAYI D++ Sbjct: 572 PVAG-----EADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAYI--------DEKKTE 618 Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +GYEI+F ++FY+ RK+ +I +++ VE LL + Sbjct: 619 IGYEISFTKYFYRPLELRKIDEIVHDIRVVEDASNRLLNAVL 660 >gi|121583286|ref|YP_973722.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2] gi|120596544|gb|ABM39980.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2] Length = 607 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 253/678 (37%), Positives = 354/678 (52%), Gaps = 79/678 (11%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + LANF+W A+ L GD+K D+GKVILP TLLRRL+C LE T+ V E++ Sbjct: 1 MAQNFSELANFVWSVADLLRGDYKAADYGKVILPLTLLRRLDCVLEGTKEQVLEEHAKHK 60 Query: 64 GSNID----LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 G + + +FYNTS ++L TL + R NL +YI FS +A+ +FE Sbjct: 61 GEGDAPTSLDRILKRKSKQAFYNTSPFTLQTLLDDQKHIRQNLTAYIGEFSADARDVFER 120 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F F + L+ LL+ + + F+ I+LHPD VP+ M ++E LIR+F +E A + Sbjct: 121 FKFLERLVELDDKDLLFLLMQKFASIDLHPDAVPNETMGLVFEELIRKFAEASNETAGEH 180 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L L D PG++R++YDPT GTGG L+ K Sbjct: 181 FTPREVIQLIVHCLFSGDSEALS-KPGVVRSMYDPTAGTGGILSVGEAVARSINKSAK-- 237 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 +V GQEL E++A+C A MLI+ + KNI +G+TLS D F ++F Y + Sbjct: 238 --MVLFGQELNDESYAICKADMLIKGQDP-------KNIVRGNTLSADGFPDEKFDYGAA 288 Query: 298 NPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPPFG W+K D ++ EH+ G GRFGPGLP++SDGS+LFLMHL +K+ GGGR Sbjct: 289 NPPFGVDWKKVLDPIKTEHETKGFAGRFGPGLPRVSDGSLLFLMHLISKMRPAAEGGGRI 348 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 IVL+ SPLF G AGSGESEIRRWLLEND++EAI+ALP D+FF T IATY++IL N K Sbjct: 349 GIVLNGSPLFTGDAGSGESEIRRWLLENDMLEAIIALPNDIFFNTGIATYIFILDNDKKA 408 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 +R+GKVQLI+AT ++T ++ G KR Sbjct: 409 DRKGKVQLIDATRMYTKMKKSLGNKRV--------------------------------- 435 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 RI + + + + +S + + +I + F Sbjct: 436 -RITDEQISEIVGVYSAGAKDANFE----LEFKEPVKSTGGNPAEAPALRIVSKVFENKF 490 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595 + + + K K GE D +L + E+VP Sbjct: 491 FGYRKVTVDRPLAEGKTGKF---------------------KKGEKAFDKDLRDTESVPL 529 Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655 ESI YF REV PHVPDA+++K DEKD G+VGYEINFNR+FY Y+ RK I Sbjct: 530 TESIDAYFKREVLPHVPDAWVNKDVKDEKDGLPGKVGYEINFNRYFYVYKAPRKPAVIAE 589 Query: 656 ELKGVEAQIATLLEEMAT 673 E+ +E + L++ + Sbjct: 590 EILEMEKRFVELMKGVVA 607 >gi|319896546|ref|YP_004134739.1| type i restriction-modification system, methyltransferase subunit [Haemophilus influenzae F3031] gi|317432048|emb|CBY80397.1| putative type I restriction-modification system,methyltransferase subunit [Haemophilus influenzae F3031] Length = 790 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 226/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++E DL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 +A L D K L Sbjct: 534 NIASLRFDKALFEPMQYLYRQYGGQVYNARFLAKTEQEITAWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + KT K+ S + A NA Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFHDFNQFKQAVEGRLKTEKIPLSATEKKAVFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 D + V GE + ++L + Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV H+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L ++ ++ +E Q L+ E+ Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788 >gi|229847072|ref|ZP_04467178.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 7P49H1] gi|229810156|gb|EEP45876.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 7P49H1] Length = 790 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 226/803 (28%), Positives = 346/803 (43%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP+++AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNEETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++ENDL Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFA 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 +A L D K L Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + K K+ S + A NA Sbjct: 594 VKTWEKAAALFQTALKLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 D + V GE + ++L + Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCRRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV H+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L ++ ++ +E Q L+ E+ Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788 >gi|68248716|ref|YP_247828.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 86-028NP] gi|68056915|gb|AAX87168.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 86-028NP] Length = 790 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 222/803 (27%), Positives = 345/803 (42%), Gaps = 158/803 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + +K++ P + G R A V + S LF G AGSGES IRR ++E DL Sbjct: 354 PRSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+ +R N G K Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473 Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + +I Y+ G S++ D + FGY ++ + RP R S Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533 Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511 ++ L D K L Sbjct: 534 NISPLRFDKALFEPMQYLYRQYGEQIYNAGFLAQTEQEITAWCEAQGIALNNKNKTKLLD 593 Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 W +++ + + + K K+ S + A NA Sbjct: 594 VKTWEKAAALFQTASTLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653 Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589 D + V GE + ++L + Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E++P ++I DYF EV H+ +A+++ E ++GYEI+FN++FY+++P R Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L ++ ++ +E Q L+ E+ Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788 >gi|331007180|ref|ZP_08330393.1| N-6 DNA methylase [gamma proteobacterium IMCC1989] gi|330419012|gb|EGG93465.1| N-6 DNA methylase [gamma proteobacterium IMCC1989] Length = 817 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 222/822 (27%), Positives = 356/822 (43%), Gaps = 176/822 (21%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV ++ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKQAVLDEVKFQKEDM 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D E +G FYN S+++L +L S T N E Y+ +SDN K I E Sbjct: 66 DATELDDEPLKAASGQVFYNVSKWTLKSLFSNATNNQQILLANFEEYLNGYSDNVKEIIE 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163 F+ S I + +L + + F I L P+ D M ++E LI Sbjct: 126 RFELFSKIRHMAGKDVLLDVLEKFVSPYINLTPNPAEDPDGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP + T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDDL----PLTITVYDPACGSGGMLTES 241 Query: 224 MNHVADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 N + + K + +G+E+ ET+A+C + M+I+ +NI+ GS Sbjct: 242 QNFIEEKYPTQKEGKSIRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGS 294 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------G 327 TLS D F RF + LSNPP+GK W ++ ++ + RF Sbjct: 295 TLSTDEFASDRFDFMLSNPPYGKSWASEQKNIKDGGE-VIDPRFKVELSDYWGNKETVDA 353 Query: 328 LPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 P+ SDG +LFLM + +K++ P G R A V + S LF G AG GES IRR+++END Sbjct: 354 TPRSSDGQLLFLMEMVSKMKSPSTSPMGTRIASVHNGSSLFTGDAGGGESNIRRFIIEND 413 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIR-NEGK 439 +++AIV LP +LF+ T I TY+W+L+N K +RRGKVQLI+A+ L+ +R N G Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWLLNNNKKGDGKGPDRRGKVQLIDASLLYRKLRKNLGN 473 Query: 440 KRRIINDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLR 482 K + +I Y+ + S++ + FGY ++ + R Sbjct: 474 KNCEFAPEHIAEITQAYLDCAEVERELDASAPEGMGDPIGIASQVFNNEDFGYYKVNIER 533 Query: 483 PLRMSFILDKTGLARLEADI---------------------------------------- 502 P R +A L D Sbjct: 534 PDRRKAKFSPEAIAPLRFDKSLAEVMEHLFEEHGDKVYDKGFLKGISKDILQWCEDNDIS 593 Query: 503 --TWRKLSPLHQSFW------LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 K L + +W L+ +M++I + + + + K K+K S Sbjct: 594 INAKAKAKLLDEKYWQKLLVILEAANLLMREIGSDEFNDFNLFKDKVDAVFKAQKIKLSA 653 Query: 555 SFIVAFINAFGRKDPRADPVTDV------------------------------------- 577 A +N + A+ V Sbjct: 654 PEKKAILNVVSWYEESAEKVVKKIVKLSGNKLDELLDHLGCSQDQLADFGFYPTSDCGDS 713 Query: 578 ---NGE---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631 GE + P ++L + E+VP + I +YF+ EV PHV +A+I+ ++ Sbjct: 714 KKSAGEYVTYEPSSDLRDSESVPLAQEIHEYFLEEVKPHVEEAWINLD--------STKI 765 Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 GYEI+FN++FY+++P R L ++ ++ +E + L+ ++ Sbjct: 766 GYEISFNKYFYRHKPLRSLDEVANDIIDLEQKAEGLIAQILG 807 >gi|330971617|gb|EGH71683.1| type I restriction-modification system, M subunit, putative [Pseudomonas syringae pv. aceris str. M302273PT] Length = 521 Score = 611 bits (1577), Expect = e-172, Method: Composition-based stats. Identities = 226/538 (42%), Positives = 317/538 (58%), Gaps = 19/538 (3%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + F+ L P+ + + M I+E LIR+F +E A + TPRD+VHL T+L++ D Sbjct: 1 QRFAVAPLEPERISNFGMGIIFEELIRKFAESSNETAGEHFTPRDIVHLTTSLVITDQDH 60 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 +P I T+YDPT GTGGFL++ ++ + HGQEL PE++A+C A Sbjct: 61 KL--APNSIVTIYDPTAGTGGFLSEGDEYIQS----ISEKVSVSLHGQELNPESYAICKA 114 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 MLI+ + +I+ G+TLS D KRF + LSNPPFG +W+K + + EH Sbjct: 115 DMLIKGQDV-------ASIKLGNTLSNDQLADKRFDFMLSNPPFGVEWKKVQKQITDEHS 167 Query: 318 -NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G GRFGPGLP++SDGS+LFL+HL +K+ P +GG R I+L+ SPLF G AGSGESE Sbjct: 168 HKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIILNGSPLFTGGAGSGESE 227 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IRR+LL+NDL+EAI+ALPTD+F+ T IATY+WILSN K R+GKVQLI+ + + +R Sbjct: 228 IRRYLLQNDLVEAIIALPTDMFYNTGIATYVWILSNHKAAARQGKVQLIDGSQHYAKMRK 287 Query: 437 -EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 G KR+ I +DQ +++ +Y S E S++ FGYRRI V RPLR++F + Sbjct: 288 SLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIDAFGYRRITVERPLRLNFQTSTERI 347 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555 A++ + +KL + L L+ M + V S Sbjct: 348 AKVLEEKALQKLDSAARQQLLAALQAMDA---TKLHRNREQFSKLLKKALTAHSVSLSMP 404 Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615 + A +NA ++DP AD T G+ DT L + ENVP ES+ DYF REV PHVPDA+ Sbjct: 405 ELKALLNALSKRDPEADICT-SKGQLEADTGLRDNENVPLGESVHDYFHREVIPHVPDAW 463 Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 ID+ D D E+G VG+EI FNR FY +QP R L +ID +LK +I ++E ++ Sbjct: 464 IDESKTDALDGEVGIVGFEIPFNRHFYMFQPPRPLAEIDRDLKACTDRIKQMIEGLSA 521 >gi|170731315|ref|YP_001776748.1| type I restriction-modification system DNA methylase [Xylella fastidiosa M12] gi|167966108|gb|ACA13118.1| type I restriction-modification system DNA methylase [Xylella fastidiosa M12] Length = 763 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 219/777 (28%), Positives = 339/777 (43%), Gaps = 148/777 (19%) Query: 28 HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSE 85 + VILPFT+LRRL+ LE T+ AV E+ N+ + + AG +FYN SE Sbjct: 2 RGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVAEQDGALRMAAGQAFYNVSE 61 Query: 86 YSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 ++L+ L ++ R++ +Y+ FS + + I F+F + I +L + +L + ++F Sbjct: 62 FTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFL 121 Query: 142 GIELHPD--------------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E++ + + M ++E LIRRF + +E A + TPRDVV L Sbjct: 122 NPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLM 181 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 LL P + S +LYD +CGTGG LT A + H + GQE+ Sbjct: 182 AKLLFLPVAERIESS---TYSLYDGSCGTGGMLTVAEEALHALAEQHGKEVSIHLFGQEI 238 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRFHYCLSNPPFGKK 304 ET+A+C A +L++ ++NI G STLS D F + F + +SNPP+GK Sbjct: 239 SDETYAICKADLLLKG-----EGAEAQNIVGGADKSTLSADQFHSRAFDFMISNPPYGKS 293 Query: 305 WEKDKDAVEKEHKNGELGRFGPG---------LPKISDGSMLFLMHLANKLELPPNGGGR 355 W+ D + + + K RF L + SDG ++F ++ K++ G R Sbjct: 294 WKTDLERMGGK-KGFSDPRFIVSHGGDSEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSR 352 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+ T IATY+W+L+N+K Sbjct: 353 IALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKA 412 Query: 416 EERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTF 473 E RRGKVQLI+A+ + +R N GKK + +ILD+Y+ + + S+ D + F Sbjct: 413 EARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLGQAQEAAQSKWFDTQDF 472 Query: 474 GYRRIKV------------LRPLRMSFILDKTGL---------ARLEADITWRKLSPLHQ 512 GY +I + R + F L L + RK + Sbjct: 473 GYWKITIERPLRLKSQLSDERIESLRFATGDEALRAEIYATHGEALYTEFAKRKPAIEAW 532 Query: 513 -----------------------------------------------SFWLDILKPMMQQ 525 +++ + Q Sbjct: 533 LKGEDENEDDDNEDSDSGDDNEAPAARKAVPVKRRKKLLDASTWQRDKALMEVAQRAQQT 592 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG------ 579 + + + + K + S A +D A PV Sbjct: 593 LGHAVFDDHNAFCACFDAVCKAQDARLSAPEKKVIYKAVSWRDDAALPVIAKRSKLKAGD 652 Query: 580 ---------------------EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYI 616 E+ PD+ L + E VP E I +F REV PH PDA+I Sbjct: 653 YFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWI 712 Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +VGYEI+F+R+FY+ P R L +I A++ +E Q LL ++ Sbjct: 713 ATNK--------TQVGYEISFSRYFYKPVPLRTLAEIRADILVLEQQTEGLLHKIVG 761 >gi|257091989|ref|YP_003165630.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044513|gb|ACV33701.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 687 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 238/704 (33%), Positives = 355/704 (50%), Gaps = 84/704 (11%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV--------KVAGYSFYNTSEY 86 +LP T+LRR + L P++ AV +++ I + F+N S+ Sbjct: 1 MLPLTVLRRFDAVLAPSKEAVLKRHAELSSKGIPNIDAILNYRAKDEDGTALGFHNHSQL 60 Query: 87 SLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 L N +L YIA FS+N + IFE F+F I +LE++ LY++ F+ I+ Sbjct: 61 DFPELKGDPDNIGRHLADYIAGFSENIRKIFERFEFEKEIEKLEESNRLYQVVAQFAEID 120 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 LHP V + M ++E LIRRF +E A D TPR+V+ L LLL+PD ++ ++ G Sbjct: 121 LHPRKVDNITMGLVFEDLIRRFNEAANETAGDHFTPREVIQLMVNLLLEPDTSVLTQA-G 179 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +I T+ DP CGTGG L +A N + + GQ+ P ++AV + +LI+ Sbjct: 180 VIVTICDPACGTGGMLAEAQNWIRAHNEQATVK----VFGQDYNPRSYAVAASDLLIKG- 234 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-HKNGELGR 323 + G+TL+ D F RF Y L+NPPFG W+ ++ +++ + G G+ Sbjct: 235 ------HKDGQVMLGNTLTDDPFPEHRFDYLLANPPFGVDWKAERKVIDRWPNFRGYSGK 288 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNG-----GGRAAIVLSSSPLFNGRAGSGESEIR 378 LP+I+DG++LFL+++ +K + +G G R AIV + SPLF G AGSGESEIR Sbjct: 289 ----LPRINDGALLFLLYMMSKFQDYKSGDRDKPGSRTAIVFNGSPLFTGGAGSGESEIR 344 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNE 437 RW++E D +EAIVALP +F+ T I T++W+++NRK R+ K+QLI+A + +T + R+ Sbjct: 345 RWIIERDQLEAIVALPEQMFYNTGIGTFIWVVTNRKAAHRKCKIQLIDARERYTPMKRSL 404 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 G KRR ++ + + + EN K SR+ D FGYRRI VLRPLR+ F + R Sbjct: 405 GDKRRYLDQTALDAVTREHGAMENSKTSRVFDNTDFGYRRITVLRPLRLRFEITDEARER 464 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557 L Q+ ++ + V ++ + K + Sbjct: 465 FLNTCP--DLFDALQAVQDELGNEPLLDWNQAWDTIQQVFRTLPDDVEGWAKGAKGTAHK 522 Query: 558 VAFINAFGRKDPRADPVTDVNG-------------------------------------- 579 F + F DP A PV + Sbjct: 523 KIFRDCFTTVDPDAAPVIAKHHKVEPLNRAALFPGQALPADITKDELYALLGLHKLPSPR 582 Query: 580 -----------EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 E+ PD L + E+VP E I Y +REV P+V DA+ID+ +DE+D I Sbjct: 583 ARGAGAEGVCIEYEPDPALKDTESVPLKEDIVSYVLREVRPYVADAWIDRETLDEQDGGI 642 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 G+VGYEINFNR F+QYQP R L++IDAEL VE +I LL E+ Sbjct: 643 GKVGYEINFNRVFFQYQPPRPLREIDAELAEVEKRILGLLSEVT 686 >gi|293401125|ref|ZP_06645269.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305251|gb|EFE46496.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 675 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 207/710 (29%), Positives = 333/710 (46%), Gaps = 79/710 (11%) Query: 1 MTEF--TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M E ++ +FIW A+D L + + VILP T++RRL+ LE T+ AV Sbjct: 1 MDENMDNQVHNAIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEDTKPAVLA 60 Query: 58 KYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNA 111 + I + AG +F N+S + L L S + + E+Y+ FS N Sbjct: 61 MKEKMDAAGITNQWPALCNAAGQAFCNSSPFLLKDLTSRAKKQTLKVDFEAYLDGFSPNV 120 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD----------------TVPDRVM 155 + I E F F + I + A +L + + F ++ + + M Sbjct: 121 QEILEKFKFRNQIDTMIDADILGAVIEKFISPTINLSPKPVYTDDTMKTIKLPALDNHGM 180 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++E L+RRF +E A + TPRDVV L L+ P K+ + YD CG Sbjct: 181 GTVFEELVRRFNEANNEEAGEHWTPRDVVDLMADLIFIPIADQIKD---ATYSCYDGACG 237 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 TGG LT A + + + GQE++PET+A+C A ML++ + +++ Sbjct: 238 TGGMLTVAQDRLMTLARRRGKDVSIHLFGQEVQPETYAICKADMLLKG-----DGEQAEH 292 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--------- 326 I GSTLS D ++F + L+NPP+GK W+ D + + + K+ RF Sbjct: 293 IAYGSTLSADGNASRQFDFMLANPPYGKSWKTDAEKMGGK-KDILDSRFNAYLEDGTQLS 351 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 +P+ DG +LFL++ +K++ G R A V + S +F G AGSGES RR+L+ENDL Sbjct: 352 MIPRTKDGQLLFLLNNVSKMKTDTPLGSRIAEVHNGSSIFTGDAGSGESNARRYLIENDL 411 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIIN 445 +EAI+ALP +F+ T + T++W+LSN+K + R+GK+QLI+AT + T ++ G K ++ Sbjct: 412 VEAIIALPDRMFYNTPLNTFVWVLSNKKEQRRKGKIQLIDATAMKTPLLKKLGDKGFELS 471 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R++I+ I++ + + R+ D FG+ I V RPLR+ E I Sbjct: 472 PENRKEIIRIFMEMQESEICRVFDNDEFGHWAITVERPLRLRVYP--------ERKIPSG 523 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 L + + I++ + Q + W K + Sbjct: 524 ILKAAEEEQYYSIIEKIKQNVDLSDWTSFAKAT------------KLKAGVLKKIRPFIT 571 Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDE 623 KD A P+ PD L + E VP I+ + EV + PDAYI Sbjct: 572 EKDASAKPIAG-----EPDVELRDTEIVPLTYEGGIEAFLDNEVRTYSPDAYI------- 619 Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 D+ +GYEI+FN++FY+ + R+ + I EL +E ++EE+ Sbjct: 620 -DESKTTIGYEISFNKYFYKAKELRESETIVKELMTLEKSATEMMEELFG 668 >gi|309776567|ref|ZP_07671547.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308915668|gb|EFP61428.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 669 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 215/708 (30%), Positives = 336/708 (47%), Gaps = 77/708 (10%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + NFIW A+D L + + VILP T++RRL+ LE T VR Sbjct: 1 MNMDNQTHTQIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTVDKVRSTK 60 Query: 60 LAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKA 113 + ID + AG SF N S + L L S + + E+Y+ FS NA+ Sbjct: 61 KMLDENKIDNQWPALCNAAGQSFCNASPFLLKDLTSRANKQKLKTDFETYLDGFSPNAQE 120 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV----------------PDRVMSN 157 I E F F + IA + A +L + + F +++ + M Sbjct: 121 ILEKFKFRNQIATMIDADILGSVIEKFVSSDINLSPYEIYKDDEKTILKHPGLDNHGMGT 180 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 I+E LIR+F E +E A + TPRDVV L L+ P + K+ T YD CGTG Sbjct: 181 IFEELIRKFNEENNEEAGEHWTPRDVVELMADLIFMPIEDQIKD---ATYTCYDGACGTG 237 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 G LT A + + S + GQE++PET+A+C A ML++ + +++I Sbjct: 238 GMLTVAQDRLQTLASRRGKNVSIHLFGQEVQPETYAICKADMLLKG-----DGEQAEHIA 292 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGL 328 GSTLS D ++F + L+NPP+GK W+ D + + + K RF + Sbjct: 293 YGSTLSADGNATRQFDFMLANPPYGKSWKVDAEKMGGK-KEILDTRFNTYLEDGTEMKMI 351 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 P+ SDG +LFL++ K++ G R A V + S +F G AGSGES RR+++ENDL+E Sbjct: 352 PRTSDGQLLFLLNNVAKMKKDSPLGSRIAEVHNGSSIFTGDAGSGESNARRYMIENDLVE 411 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447 AI+ALP ++F+ T I T++W+LSN+K E R+GK+QLI+AT + + +R GKK D Sbjct: 412 AIIALPENMFYNTGIGTFIWVLSNKKEERRKGKIQLIDATAMKSPLRKKMGKKNCEFTSD 471 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 R++I+ I++ E + S++ D F Y + V RPLR+ D R+ T++K Sbjct: 472 IRKEIMRIFLEMEESEVSKIFDNNDFAYWNVTVERPLRLRVFAD-----RVIPADTFKKA 526 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + + K K+ + K Sbjct: 527 DEYETVTTAIAKAAATAPLDDWSAFAKAT--------------KLKKAQLNKIRPFITEK 572 Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKD 625 D A D PD++L + EN+P+ I+ + EV + PDAYI D Sbjct: 573 DVTA-VAID-----EPDSDLRDTENIPFTYEGGIETFMQNEVLTYAPDAYI--------D 618 Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 ++ ++GYEI+F ++FY+ R++ DI L +E + ++ + Sbjct: 619 EKKTQIGYEISFTKYFYKPAELREMADIIENLNSLEKEADGMMANIMG 666 >gi|317132750|ref|YP_004092064.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3] gi|315470729|gb|ADU27333.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3] Length = 668 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 214/704 (30%), Positives = 335/704 (47%), Gaps = 76/704 (10%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 S+ +FIW A+D L + + VILP T++RRL+ LE T+ AV Sbjct: 2 DNQEYNSIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTKKAVLTMKKQL 61 Query: 63 GGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFE 116 + ID + AG +F N S + L L S + ++Y+ FS N + I + Sbjct: 62 EAAKIDNQWPALCNTAGQAFCNDSPFLLKDLTSRAKKQTLEADFKAYLDGFSPNVQEILD 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD----------------TVPDRVMSNIYE 160 F F I + A +L + F+ +++ + + M I+E Sbjct: 122 KFKFRDQIKTMVDADILGAVIDKFTSSDINLSPDPVYKDAEKKIVKLPGLDNHGMGTIFE 181 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LIRRF E +E A + TPRDVV L L P + K+ + YD CGTGG L Sbjct: 182 ELIRRFNEENNEEAGEHWTPRDVVELMADLAFYPVEDQIKD---ATYSCYDGACGTGGML 238 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 T A + + GQE++PET+A+C A ML++ + +++I GS Sbjct: 239 TVAQARLLTLAGRRGKNVSIHLFGQEVQPETYAICKADMLLKG-----DGEEAEHIFYGS 293 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------GLPKI 331 TLS D ++F + LSNPP+GK W+ D D + + + RF +P+ Sbjct: 294 TLSLDGNPSRQFDFMLSNPPYGKSWKTDADKMGGKSEI-LDTRFNAYLPGGEELKMIPRT 352 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 SDG +LFL++ +K++ G R V + S LF G AGSGES RR+++E DL+EAI+ Sbjct: 353 SDGQLLFLLNNVSKMKTDTELGSRIIEVHNGSSLFTGDAGSGESNARRYMIERDLVEAII 412 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450 ALP ++F+ T I TY+W+LSN+K E R+GK+QLI+AT++ +S+R N G K + R+ Sbjct: 413 ALPDNMFYNTGIGTYIWVLSNKKEERRKGKIQLIDATNMKSSLRKNMGNKNCEFTPEIRK 472 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +I+ I++ E S + D FGY + V RPLR+ ++ + T++K S L Sbjct: 473 EIVRIFLDMEESDVSMIFDNSEFGYWNVTVERPLRLRVFPERE-----IPEDTFKKQSEL 527 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 P+ + + K + DP Sbjct: 528 DSVREAVANAPVGTPLDDWDAFAKATKLKKTQLKK--------------IRPFITETDPH 573 Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 A V E D NL + EN+P+ I + +EV P+ PDAY+ D+ Sbjct: 574 AKEV-----EGESDPNLRDSENIPFNYDGGIDAFIEKEVKPYAPDAYV--------DESK 620 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 ++GYEI+F ++FY+ R ++DI A LK +E + +++E+ Sbjct: 621 TKIGYEISFTKYFYKPVQLRDMKDILASLKELERESDGVMDEIV 664 >gi|323160770|gb|EFZ46705.1| N-6 DNA Methylase family protein [Escherichia coli E128010] Length = 603 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 309/618 (50%), Positives = 411/618 (66%), Gaps = 21/618 (3%) Query: 1 MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR VR+ Y Sbjct: 1 MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60 Query: 60 LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 LA S IDL + ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F Sbjct: 61 LAEKQSGIDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEF 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F TI LEKA LLY++ +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD V LAT L+L D+ +F E G+IRT+YDPTCGTGGFL+DA++ + + GS K+ Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 VP GQEL+P THA+ + M+IR +++ NI+QG+TLS D +FHY L+N Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288 Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG KWEK K VE+EHK GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPR 408 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+ +VQLIN D+WT +R +G KR+ ++D+Q I+ Y E ++ F YR Sbjct: 409 RKNQVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYR 468 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ + RPLR + G+A T++KL P Q+ W+ L + + PY WA Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFVQQDTFKKLRPEQQAAWVQYLTDNLG-LQPYEWA---- 523 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + ++K N K K SK+ A F + DP+ +P D G+ I D L + E++P+ Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFD 583 Query: 597 ESIQDYFVREVSPHVPDA 614 ++DYF +EV PHVPDA Sbjct: 584 RDVEDYFAQEVLPHVPDA 601 >gi|167814675|ref|ZP_02446355.1| putative type I restriction-modification methylase [Burkholderia pseudomallei 91] Length = 545 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 231/605 (38%), Positives = 326/605 (53%), Gaps = 65/605 (10%) Query: 72 FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 V FYNTS L L + R NL +YI +FS A+ IFE FDF + + RL K Sbjct: 1 MRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYTQVERLAK 60 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A LLY + + F+ I+LHP V + M ++E LIR+F +E A + TPR+V+ L Sbjct: 61 ADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIRLMVN 120 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 LL DD + ++R +YDPT GTGG L+ A + + ++ +GQEL Sbjct: 121 LLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVARL----RMYGQELND 176 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 E++A+C A MLI+ + +NI G+TLS D G++F Y LSNPPFG +W+K + Sbjct: 177 ESYAICKADMLIKGQDV-------ENIVAGNTLSDDGHAGRQFDYMLSNPPFGVEWKKVE 229 Query: 310 DAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 V E++ G GRFGPGLP++SDGSMLFL+HL +K+ GG R IVL+ SPLF G Sbjct: 230 KTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLNGSPLFTG 289 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G VQLI+A+ Sbjct: 290 GAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGFVQLIDAS 349 Query: 429 DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 W +R G KRR ++D+ + ++ + + + + D R V + Sbjct: 350 SFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVVPAGSNVP 409 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 + + + +R +G+ V+ +++ + K Sbjct: 410 NVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERALRDEQGKV 449 Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607 + G K + G+ D++L + ENVP + I YF REV Sbjct: 450 V---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIGVYFEREV 487 Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667 PH PDA+I D++ +VGYEI FNR FY ++P R L ID ELK V A I + Sbjct: 488 LPHAPDAWI--------DEQKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAVSANIMRM 539 Query: 668 LEEMA 672 LEE+A Sbjct: 540 LEELA 544 >gi|260438581|ref|ZP_05792397.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Butyrivibrio crossotus DSM 2876] gi|292809172|gb|EFF68377.1| putative type I restriction-modification system, M subunit N-6 Adenine-specific DNA methylase [Butyrivibrio crossotus DSM 2876] Length = 702 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 223/701 (31%), Positives = 340/701 (48%), Gaps = 55/701 (7%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 ++ NFIW A L G ++ + VI+P ++RR ECAL+ TR AV +K+ + Sbjct: 19 STEVNFIWSIANKLRGPYQSDKYKDVIIPMVIIRRFECALDDTREAVAKKFEEV--PSYP 76 Query: 69 LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 ++ +++GY FYNTS +L+ L + + N + YI SFS N + I + DF I + Sbjct: 77 AKAMYRISGYQFYNTSRLTLAELVNDADHLAANFKFYIKSFSANIQDIIRNLDFDKQIDK 136 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 ++K L + K FS I+L+P+T+ + M I+E LIR+F + A D T RD++ Sbjct: 137 MDKHNRLLSVVKAFSEIDLNPNTIDNMKMGYIFEELIRKFSE--NAEAGDHYTGRDIIKA 194 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++LL + G I T+ D GTGG L+ A N++ + QE Sbjct: 195 MVSILLAEGCDDIFDD-GKIVTILDQAAGTGGMLSTANNYIKRFNPTADV----RLFSQE 249 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW- 305 + PE++A+C+A MLIR +D NI+ T+ D FT + + + NPPFG+ W Sbjct: 250 VNPESYAMCLAEMLIRGQNAD-------NIRLQDTMKADCFTDTKMRFVIENPPFGQPWG 302 Query: 306 -----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E D++AV+ E G GRF G P D +LF+ NK++ GRAAI+ Sbjct: 303 GKDAPEGDEEAVKAEVLKGTSGRFPAGAPSSGDMQLLFIQSAINKMDDEC---GRAAIIE 359 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + SPLF+G SGES+IRRWLLEND IEAI+ L TD+F+ T IATY+W+LS K ER+G Sbjct: 360 NGSPLFSGGTSSGESQIRRWLLENDYIEAIIQLSTDMFYNTGIATYIWVLSKNKRAERKG 419 Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 K+QLI+A+ S+R G KR+ I + R +I +Y + + ++ D F YR Sbjct: 420 KIQLIDASSFSHSLRKTLGNKRKEITPEDRIEITKLYADFKENEHCQIYDNTEFIYREYA 479 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP----------- 528 V++PL+ S+ + + + + + L + L+ + + + Sbjct: 480 VMQPLQRSYAITEDRINAMLSSGALSTLYDEAKVDELENMDELTGKDKNKLDNFKKNKPI 539 Query: 529 ----------------YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 Y E F K SK I D AD Sbjct: 540 YDAIVDALNNAVSDKVYKNPEIFTPVVNNILSGIISDAKDSKKIADKIIKGLSVMDKTAD 599 Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632 D G I DT + E VP+ +I DY EV PHVPDA K + + G Sbjct: 600 IQKDKKGNVIYDTETKDTEIVPWETNIDDYMASEVLPHVPDAKAFFEEDLGKKNPVIKTG 659 Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 EI F R+FY+YQ ++ +EA + + ++++ Sbjct: 660 AEIPFTRYFYKYQAPASSDELAKRFNELEASVDSRIKKLFG 700 >gi|119513481|ref|ZP_01632505.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414] gi|119461861|gb|EAW42874.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414] Length = 575 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 62/602 (10%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------P 151 FSDN K I F+ + I R+ +A +L+ + + F+ +++ Sbjct: 2 DGFSDNVKEIISKFELRNQIRRMVEADVLHDVLEKFTSTDINLSPHEIVDSKGETLPGLS 61 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + M ++E LIR+F E +E A + TPR+V+ L LL P + T+YD Sbjct: 62 NLGMGYVFEELIRKFNEENNEEAGEHFTPREVIKLMIHLLFIPIKDEI----PPVITVYD 117 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 CG+GG LT++ + + +G+E+ ET+A+C + M+I+ + Sbjct: 118 GACGSGGMLTESQGFIEAAEGEINSQSKVYLYGKEVNGETYAICKSDMMIKGNDP----- 172 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG------ 325 +NI+ GSTL+ D F RF + LSNPP+GK ++ D+ + K RF Sbjct: 173 --ENIKFGSTLATDDFGEMRFDFMLSNPPYGKSYKSDQKYILD-GKEVLDPRFQVELQNF 229 Query: 326 -------PGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESE 376 P +P+ SDG +LFLM + K++ G R A + + S LF G AGSGES Sbjct: 230 QGQLETLPAIPRSSDGQLLFLMDMVGKMKPLNQSPLGSRIASIHNGSALFTGDAGSGESN 289 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR- 435 IRRW++END +E IV LP ++F+ T IATY+W+LSNRK E+RRGKVQLI+ T+ + +R Sbjct: 290 IRRWIIENDWLECIVGLPLNMFYNTGIATYIWVLSNRKPEKRRGKVQLIDGTEWYGKLRK 349 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 N GKK + + +QI + ++ E S++ D + FGY +I V RPLR+SF + + Sbjct: 350 NLGKKNCELTPENIQQITETFLRFEETAESKIFDNQDFGYHKITVERPLRLSFQVTPERV 409 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555 + + L +L + + + + + K K + Sbjct: 410 EQFGS---------LADDKLYPVLGILKDLFGDEVYQDFNLVKQKLEKALKAEGFKLAAK 460 Query: 556 FIVAFINAFGRKDPRADPVTDVNGE----WIPDTNLTEYENVPYLESIQDYFVREVSPHV 611 + + F KD A+ V + + D+ L + ENVP E IQ+YF REV PHV Sbjct: 461 DLKLVYDTFTEKDETAEAVIKKKTKAGVVYESDSELRDTENVPLKEDIQEYFNREVLPHV 520 Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 PDA+ID E GYEI+F ++FY++QP R L DI A++ +EA+ +L+ + Sbjct: 521 PDAWIDF--------EKTVRGYEISFTKYFYKFQPLRSLADIAADILALEAETEGVLKAV 572 Query: 672 AT 673 Sbjct: 573 IG 574 >gi|257791268|ref|YP_003181874.1| N-6 DNA methylase [Eggerthella lenta DSM 2243] gi|257475165|gb|ACV55485.1| N-6 DNA methylase [Eggerthella lenta DSM 2243] Length = 691 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 279/693 (40%), Positives = 394/693 (56%), Gaps = 30/693 (4%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 +A N IW A + + D+ K+ILPF +LRR ECALEPTR+AV + G Sbjct: 4 KTAFDYVNEIWSIANYVRDVIRPADYNKLILPFAVLRRFECALEPTRAAVSRQAAK-GVW 62 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + D + ++G+ FYN + ++LS LG+T T + L +YI FS NA+ + + F+ T Sbjct: 63 DDDDPKYCALSGHCFYNVTSFTLSNLGATKTCDALMAYINGFSVNAREVLQRFEMRQTCE 122 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L++ G+LY++C FSG +L P+TV DR+M++IYEHLI+R+G E+S+ AEDFMTP+DV Sbjct: 123 KLDEKGMLYEVCTRFSGFDLGPETVSDRMMTDIYEHLIQRYGEEISQDAEDFMTPKDVAR 182 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPH 243 LATALL +D L G IRTLYD +CGT GF+ DA++ + + H K P +VP+ Sbjct: 183 LATALLFANEDTLLNADNGDIRTLYDGSCGTCGFICDALDQLDEWHDKGHFKSPTKIVPY 242 Query: 244 GQELEPETHAVCVAGMLIRRLE------SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQELE T A+ A +++R + D DLS I G TL D F G+ F+Y L+ Sbjct: 243 GQELEDATWAMGKAALMLRNIAGGSGDVLDQMTDLSAGIMLGDTLDDDRFEGRTFNYQLT 302 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+GK+W+K+KDAV +E G GRFG G P I DGSMLF+ ++A K+ P GGG+AA Sbjct: 303 NPPYGKEWKKEKDAVLEEMGRGFDGRFGAGKPDIDDGSMLFMQNVAAKMAPPKEGGGKAA 362 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IVLS SPLFNG AGSG S IRRWL DL++ IV LPT++F+RT IATY+W+L+N K E Sbjct: 363 IVLSGSPLFNGDAGSGPSGIRRWLFSEDLVDCIVKLPTEIFYRTGIATYIWVLNNHKPEN 422 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+G VQLI+A++ T++R +G KR I +DQ I+ YV + S ++ F YR Sbjct: 423 RKGYVQLIDASEEKTALRKSQGNKRYEIGEDQAAWIVRTYVDGHDHGRSVIVPVENFMYR 482 Query: 477 RIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 ++ RPLR+ GL L KLS ++ ++ Y + Sbjct: 483 KVTTQRPLRVVIEPSVDGLDALFTLSKPMEKLSDASRAAIRSWVEKNEGASLTYSEVLAA 542 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595 ++ K+ E + A + FGR+DP A P D G + D L + ENVP Sbjct: 543 TEKLHKAIEKPK---PQKAALADALVKVFGRRDPSATPAIDAKGNPVFDPELKDTENVPI 599 Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG---------------YEINFNRF 640 I DY EV P+ PDA +D+ DE + + G I+FNR+ Sbjct: 600 GMEINDYMATEVLPYAPDAVVDESVKDEPKYD-AKSGLTANPLGDGGVGVVGTTISFNRY 658 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 FY+Y+ R Q I E+ +E + L+ Sbjct: 659 FYKYEKPRDPQVIAKEILELEDGLGELMRGFLA 691 >gi|86130624|ref|ZP_01049224.1| DNA adenine methylase [Dokdonia donghaensis MED134] gi|85819299|gb|EAQ40458.1| DNA adenine methylase [Dokdonia donghaensis MED134] Length = 809 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 222/825 (26%), Positives = 359/825 (43%), Gaps = 176/825 (21%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S + L +FIW A+D L + + VILP +LRRL+ LEPT+ V ++ Sbjct: 2 NNSSHSKLISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKKEVMDEVHFQ 61 Query: 61 --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAK 112 G + ++ E +GY FYNTS+++L L T + N E Y+ FS N K Sbjct: 62 KVEAGFTELENEGLKAASGYVFYNTSKWTLQLLKDTASNNQSILLANFEDYLLGFSPNVK 121 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIY 159 I + F+ S I + +L + + F+ ++ + M ++ Sbjct: 122 EIVDKFNLVSQIKHMAGKDVLLDVLEKFTSSHINLTPFEKEDPEGRKLPALSNLGMGYVF 181 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LIR+F E +E A + TPR+V+ L T ++ +P + T+YDP CG+GG Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIELMTHIIFEPIKDQL----PPVMTIYDPACGSGGM 237 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 LT++ N + D K + +G+E+ ET+A+C + M+I+ + +NI+ G Sbjct: 238 LTESQNFIKDPEGAIKATGDVYLYGKEINDETYAICKSDMMIKG-------NSPENIRVG 290 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------P 326 STLS D FTG F + LSNPP+GK W ++ ++ K+ RF Sbjct: 291 STLSTDEFTGTSFDFMLSNPPYGKSWSSEQKYIKD-GKDVIDPRFKIQLADYWGTVEDVD 349 Query: 327 GLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 +P+ SDG +LFLM + +K++ G R A V + S LF G AG GES IRR+++EN Sbjct: 350 AVPRSSDGQLLFLMEMVSKMKTLEQSPAGTRIASVHNGSSLFTGDAGGGESNIRRYIIEN 409 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443 D++EAI+ LP +LF+ T I TY+W+LSN KT R+GKVQLI+A+DL+ +R N G K Sbjct: 410 DMLEAIIQLPNNLFYNTGITTYIWVLSNNKTATRKGKVQLIDASDLYKKLRKNLGNKNCE 469 Query: 444 INDDQRRQILDIY---VSRENGKF----SRMLDYRTFG---------------------- 474 +I ++Y +SR+ + S + D FG Sbjct: 470 FTKKHIDKITEVYMSALSRKRTEELPLESLVFDNSDFGYYKATVERPKRLKSQCTDARIE 529 Query: 475 -----------------------YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 YR +K + + ++ + K Sbjct: 530 TLRYDRVLQEAMQYAYETYGDSVYRDVKKHQKELLEWVEKEELNLSSAHKTKLCKQDTWD 589 Query: 512 QSF-WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK------------------A 552 + L K + + + V + +E K K+ A Sbjct: 590 KHLRQLTTAKKLQNIFGDTLYTDYNVFKKEVDDELKAQKIAIAASDKKAILNALSWYDAA 649 Query: 553 SKSFIVAFINAFGRK---------DPRAD-------PV---------------------- 574 + I + G K AD P Sbjct: 650 AAKVIKKVVKLTGDKLTQLLEHLNCEEADLPDFGYYPCHAERSRSVSNDVPTSLSLRAPS 709 Query: 575 ----TDVNGEW---IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627 + GE+ +++L + ENVP ++I YF REV PHV +A+I+ Sbjct: 710 RSERSLKKGEYVVYETESDLRDTENVPLKDNIHSYFKREVHPHVAEAWINLD-------- 761 Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 ++GYEI+FN++FY++ P R ++++ A++ +E Q L+ ++ Sbjct: 762 ATKIGYEISFNKYFYKHTPLRNIEEVTADILDLEKQSDGLIADIL 806 >gi|172040758|ref|YP_001800472.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] gi|171852062|emb|CAQ05038.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] Length = 644 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 227/676 (33%), Positives = 343/676 (50%), Gaps = 46/676 (6%) Query: 7 SAASLA-NFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 S A L + +W A+ L + D+G ILP T+LRRLEC LEPT+ V + Sbjct: 2 STAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILEPTKGEVLDLVEILQE 61 Query: 65 SNIDLESF----VKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDF 118 E G SFYN+S L+ + + L Y+ +FS + + +++ F Sbjct: 62 EGYSEEMIDWEVRVRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVGAFSSSVRDVWDAF 121 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF+ + LE A L+ + K+F+ I++ D +PD M +++EH++ + + A F Sbjct: 122 DFAVKMKTLENASRLWPVVKHFATIDMSLDALPDAQMGDLFEHVMYKAFDTKGKAAGAFY 181 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD + L +L DD + G RT+YDPT GTGG L A + + ++ Sbjct: 182 TPRDAIRLMVDILFASDDVGLT-AEGASRTVYDPTAGTGGMLLVAARALKELNPDIEV-- 238 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 V GQEL +A+ A +LI+ E D I+ G TL DL+ G++F Y LSN Sbjct: 239 --VLAGQELMSTGYAIGKADLLIQGGEPDA-------IRHGDTLLTDLYEGEQFEYILSN 289 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--GGGRA 356 PPFG WE + +V+++ K RF GLP DG MLFL H+A+KL GGR Sbjct: 290 PPFGTDWEVQQQSVKEQAK-VPGSRFSHGLPSKDDGQMLFLAHVASKLMPAGPNGAGGRG 348 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+V + SPLF G SG +IR WLLENDL++AI+ LPT++F+ T I+TY+WIL K E Sbjct: 349 AVVSNGSPLFTGAPESGPDKIRAWLLENDLVDAIIQLPTNMFYGTGISTYVWILDTNKEE 408 Query: 417 ERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 R+G VQLI+A++ W+ + G+KRR + + R+++L+ Y + E+ + S++L G+ Sbjct: 409 HRKGFVQLIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAAFEDTEISKVLTPADLGF 468 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 R +KV + R+ + +A++ + + P H D+ + Sbjct: 469 RDVKVTKQKRLRVAVTPEAVAQV---LEHKSAVPEHAEVLADVADVKFNDLPE------- 518 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595 AK VK I A + A G D A+P D G I D + E +P Sbjct: 519 ----ALKAAAKKRGVKMLAGMIDAVLEAVGVPDENAEPSVDRKGNPILDPAFSMTERIPL 574 Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655 E + ++ REV P PD D+E +VGYEI F R FY+ P R L++IDA Sbjct: 575 TEDVGEHMTREVLPFAPD--------VTWDEEAAKVGYEIPFKRVFYRPTPVRSLEEIDA 626 Query: 656 ELKGVEAQIATLLEEM 671 ++ V ++A E+ Sbjct: 627 DVAAVMGRLAEKFAEV 642 >gi|154508214|ref|ZP_02043856.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC 17982] gi|153797848|gb|EDN80268.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC 17982] Length = 708 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 220/705 (31%), Positives = 338/705 (47%), Gaps = 59/705 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S A+ +FIW A L + + VI+P T++RR ECAL PT+ V ++ + Sbjct: 22 SVANEVSFIWSIANKLRPTYSSDKYKDVIIPMTIIRRFECALAPTKDKVVAQHEKI--PS 79 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF----EDFDF 120 ++ ++AG+SFYNTS ++L L N N ++YI FS N + + DF Sbjct: 80 YPYKAMCQIAGFSFYNTSRFTLERLLDDPDNIAANFKAYIEGFSPNVNDLLMSVEKGLDF 139 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + I +++K LY + K FS ++L P T+ M I+E LIR+F + A + T Sbjct: 140 AKQIDKMDKGNRLYGVVKAFSELDLDPRTIDSIKMGYIFEELIRKFSE--NAEAGEHYTG 197 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 RD++ L ++LL + G + T+ D CGTGG L+ A N++ + Sbjct: 198 RDIIKLMVSILLAEGCDDIFDD-GKVITILDQACGTGGMLSTAFNYIHRFNPTA----DI 252 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 GQE PE++A+C+A MLI+ ++D NI+ T+ D FT + + + NPP Sbjct: 253 RLFGQENNPESYAMCLAEMLIKDQDAD-------NIRFQDTMLADCFTDIKMRFVIENPP 305 Query: 301 FGKKWEKD------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 FG+ W ++AV EH+ G GR+G G P D MLFL +K++ G Sbjct: 306 FGQAWGGKDAADGVENAVIAEHEKGFSGRWGAGTPGAGDMQMLFLQSAVDKMDPER---G 362 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAAI+ + SPL+ G GSGES+IRRWLLE DLIEAI+ALP DLF+ T IATY+WILS K Sbjct: 363 RAAIIENGSPLYTGEVGSGESQIRRWLLEQDLIEAIIALPVDLFYNTGIATYIWILSKNK 422 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 ER+GKVQLI+A+ ++ +R K+ I D R I +Y ++ F Sbjct: 423 RAERKGKVQLIDASQIFHKLRKGLGKKKNEITPDDREHITRLYADFAENDLCQIYPNEEF 482 Query: 474 GYRRIKVLRPLRMSFILDKTGLARL--------------------EADITWRKLSPLHQS 513 YR V++PL+ S+ + + + L + ++T ++ L + Sbjct: 483 IYREYTVMQPLQRSYGITEERIENLINGGYLNSLFNPTKVAKLEQKEELTAKEERELAKH 542 Query: 514 FWLD-----ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 + I+ + I W + + + V + + D Sbjct: 543 RQGEPLYTAIIDTLRAAITDQVWLAPKPFTAHLKSLVRQTVV--DSKLLAKIADGLSLMD 600 Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 A+ D G I DT + E VP E I +Y REV P++PDA K K + Sbjct: 601 KSAEIQRDRKGNTIYDTATKDVERVPAEEDITEYMQREVLPYIPDAKAFFEEDLSKKKPV 660 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 + G EI F R+FY Y+ + E +E +I+ + + Sbjct: 661 VKTGAEIPFTRYFYSYETPVTAEIYAQEFMRLEQEISASIVSLFG 705 >gi|327184405|gb|AEA32850.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118] Length = 695 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 220/693 (31%), Positives = 337/693 (48%), Gaps = 52/693 (7%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 ANFIW A + + +G VI+P T++RR ECALEPT+ V +Y + Sbjct: 19 ANFIWSIANKIRAAYMPDKYGDVIIPMTIIRRFECALEPTKDQVLAQYQEM--PEFPAMA 76 Query: 72 FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 F ++ GY FYNTS++ L L N N ++YI+ FS + + I + D S I ++ Sbjct: 77 FYQITGYQFYNTSKFDLKELCNDPDNIAENFKAYISGFSKDVQEILKQLDMSGQIDKMND 136 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 LY + K FS I+L + M I+E+LI RF + A F T RD++ L + Sbjct: 137 NNCLYSVVKAFSEIDLSVEHFDSIKMGYIFENLIGRFYQ--NVDAGQFYTGRDIIKLCVS 194 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 LLL + + T+ D CGTGG L+ A ++ + +GQE+ Sbjct: 195 LLLAEGCDDITDK-NKVITVIDQACGTGGMLSTAYTYLKHYNPTADV----HLYGQEMMG 249 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---- 305 +++AV +A MLI+ D N + TL +D F ++ + L NPPFG W Sbjct: 250 QSYAVGLAEMLIKNQNID-------NFKIADTLKEDCFPDRKMRFALENPPFGTPWGGKD 302 Query: 306 --EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + +DAV++E+ G+ R+ GLP D +LFL KL GRAAI+ + S Sbjct: 303 AKDGQEDAVKEEYAKGKNSRWPAGLPASGDSQLLFLQSALAKL----EDNGRAAIIENGS 358 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 PLF G SGES+IRRWLLEND +EAIVA+PTDLF+ T IATY+WILS K+E+RRGKVQ Sbjct: 359 PLFTGNTASGESQIRRWLLENDYLEAIVAMPTDLFYNTGIATYIWILSKNKSEKRRGKVQ 418 Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 LI+AT+++T +R G K+ + + R +I +Y S++ F YR V + Sbjct: 419 LIDATNIYTKLRKPLGNKKNEFSPENRAEITKLYTDFSENDLSQIHANNEFIYREYTVKQ 478 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 PL+ + + + + ++ + + + L+ + ++ A+ E++ Sbjct: 479 PLQRDYGITEARIQQMLQSTSVKNFYDEAKVQELESSETKLKAKDAKKLAKYKKNEAVYK 538 Query: 543 NEAKTLKVKAS-----------------------KSFIVAFINAFGRKDPRADPVTDVNG 579 LK S K I ++ + D +A+ D G Sbjct: 539 QMMSILKENISNKLWMSPEEFEPVLHNLLDGIVDKKLISKIMDGLSQMDKKAEIQHDRKG 598 Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639 + D + E V E I DY +EV P VPDA K K + + G EI F R Sbjct: 599 NIVYDKETADTEIVNIDEPIDDYMQKEVLPFVPDAKAFFDEDLGKKKPVIKTGAEIPFTR 658 Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +FY+YQ + + +E+ +EA I+ ++ + Sbjct: 659 YFYKYQKPEDSEKLASEINKLEAAISEEMDSLF 691 >gi|303235379|ref|ZP_07321996.1| N-6 DNA Methylase [Finegoldia magna BVS033A4] gi|302493500|gb|EFL53289.1| N-6 DNA Methylase [Finegoldia magna BVS033A4] Length = 705 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 219/712 (30%), Positives = 341/712 (47%), Gaps = 60/712 (8%) Query: 1 MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 MT+ + ANFIW A L G + +G VI+P T++RR EC LE T+ AV EKY Sbjct: 10 MTDDVSIDITQEANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKY 69 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 + + +++G FYNTS ++L L N ++N YI SFS N I Sbjct: 70 --TDNKSYPERAMYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQ 127 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + + I ++ K L+ + K FS ++L +T M I+E+LI RF + A + Sbjct: 128 LEIKTHIKKMNKENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRFYQ--NVDAGQY 185 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 T RD++ + ++ G + T+ D GT G LT A NH+ + Sbjct: 186 YTGRDIIKMMVYVITAEGCDDIY-DEGKVITIADQAAGTSGMLTTAYNHLHNLNPKA--- 241 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 + GQE+ +++AV +A MLI+ + ++N + T +D F + + L Sbjct: 242 -DIRLFGQEIMGQSYAVGLAEMLIKGQD-------ARNFKHADTFKEDFFEDTKMRFVLE 293 Query: 298 NPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 NPPFG W + AV + HK G R+ GLP D +LF+ +K++ Sbjct: 294 NPPFGMSWGGKDAKAGQEQAVLENHKRGIDSRWPAGLPSSGDAQLLFMQSAIDKMDDEH- 352 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GRAAI+ + SPLFNG SGES+IRRWLLENDLIEAI+A+PT+LF+ T IATY+WILS Sbjct: 353 --GRAAIITNGSPLFNGGVSSGESQIRRWLLENDLIEAIIAMPTELFYNTGIATYVWILS 410 Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 K +ER GK+QLI+AT+++ ++R G KR+ + R+ I +Y S++ + Sbjct: 411 KNKRQERIGKIQLIDATEIYHTLRKSLGNKRKEFTAEDRKTITKLYSDFVENDKSKIYEN 470 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLE-------------------ADITWRKLSPLH 511 F YR V++PL+ S+ ++ + LE T KL+ Sbjct: 471 EEFIYREYTVMQPLQRSYAINDERIENLETSGKLNSFYDKTKHDDILEKQETSEKLTKTE 530 Query: 512 Q----------SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561 + + I + + + I + E + ++ ++ +K+ I Sbjct: 531 KNNLKKYTENEKTYNKIFEILKENITDKKYMSVDEFEPVVNDLL--SELSLNKTVFNNII 588 Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621 + D AD TD G I D + + E V E+I DY REV PH+PDA Sbjct: 589 DGLSEMDKEADIQTDKKGNVIYDKDTKDTEIVNVRENIDDYMKREVLPHIPDAKSFFEED 648 Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 + G EI F R+FY+Y+ R +++ E +E + ++E+ Sbjct: 649 VTLKNPKIKTGAEIPFTRYFYKYEAPRPSEELAQEFLELEDIVNQKVKELFG 700 >gi|255657324|ref|ZP_05402733.1| type I restriction-modification system specificity subunit [Clostridium difficile QCD-23m63] Length = 725 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 213/727 (29%), Positives = 349/727 (48%), Gaps = 80/727 (11%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++RR + +EP ++ + + Sbjct: 11 NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 D+ + A G FYNTS + L L N + N E Y+ FS+N K I + FDF++ Sbjct: 71 DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ EL+ + M ++E +IR+F Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDV+ L + + P K+ ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 D + + GQE+ PET+A+ A +LI+ ++D S N+ GSTLS+D + Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 303 GQHFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 363 QLLFLLNNISKMKE-TELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+W+LSNRK E R+GK+QLINA + TS+R N GKK ++ RR IL Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 + Y+ E ++S++ FGY ++ V RPLR + + + + +E ++ Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541 Query: 503 -----------TWRKLSPLHQ----SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 T + L + +L++L+ M + + Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601 Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVR 605 SK + +D A+ TD G I D L + E++P I ++ + Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV P+ DA++ D+ ++GYEINF ++FY+ + ++DI +K +E + Sbjct: 662 EVLPYHEDAFV--------DESKTQIGYEINFTKYFYKAKKLESVEDIVCRIKELEKRSD 713 Query: 666 TLLEEMA 672 ++E + Sbjct: 714 GMMETVL 720 >gi|168362838|ref|ZP_02696012.1| type I restriction-modification system specificity subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903053|gb|EDT49342.1| type I restriction-modification system specificity subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 725 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 212/727 (29%), Positives = 348/727 (47%), Gaps = 80/727 (11%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++RR + +EP ++ + + Sbjct: 11 NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 D+ + A G FYNTS + L L N + N E Y+ FS+N K I + FDF++ Sbjct: 71 DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ EL+ + M ++E +IR+F Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDV+ L + + P K+ ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 D + + GQE+ PET+A+ A +LI+ ++D S N+ GSTLS+D + Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 303 GQHFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 363 QLLFLLNNISKMKE-TELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+W+LSNRK E R+GK+QLINA + TS+R N GKK ++ RR IL Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 + Y+ E ++S++ FGY ++ V RPLR + + + + +E ++ Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541 Query: 503 -----------TWRKLSPLHQ----SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 T + L + +L++L+ M + + Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601 Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVR 605 SK + +D A+ TD G I D L + E++P I ++ + Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV P+ DA++ D+ ++GYEINF ++FY+ + ++DI +K +E + Sbjct: 662 EVLPYHEDAFV--------DESKTQIGYEINFTKYFYKSKKLESVEDIVCRIKELEKRSD 713 Query: 666 TLLEEMA 672 ++ + Sbjct: 714 GMMATVL 720 >gi|259502614|ref|ZP_05745516.1| type I restriction-modification [Lactobacillus antri DSM 16041] gi|259169429|gb|EEW53924.1| type I restriction-modification [Lactobacillus antri DSM 16041] Length = 699 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 212/691 (30%), Positives = 341/691 (49%), Gaps = 50/691 (7%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 ANFIW A L G + +G VI+P T++RR ECALEPT+ V +Y A + Sbjct: 19 ANFIWSIANKLRGTYMPDKYGDVIIPMTIIRRFECALEPTKDKVLAQYEAM--PTYPARA 76 Query: 72 FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 K++G+ FYNTS++ L L N +N +SY+A FS + + I + D S I +++K Sbjct: 77 MYKISGFQFYNTSKFDLQELCNDPDNINSNFKSYLAGFSADVQEILRNLDIESNIDKMDK 136 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 G LY + K FS ++L M I+E+LI RF + A F T RD++ L + Sbjct: 137 GGCLYNVVKAFSELDLSVAKFDSIKMGYIFENLIARFYQ--NVDAGQFYTGRDIIRLCVS 194 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 LLL E + T+ D CGTGG L+ A ++ + GQEL Sbjct: 195 LLLAEGSEDILED-NKVVTVLDQACGTGGMLSTAYTYLKHLNPT----VDVHLFGQELMG 249 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---- 305 +++AV +A MLI+ D N + TL +D F ++ + L NPPFG W Sbjct: 250 QSYAVGLAEMLIKDQNID-------NFKHADTLKEDCFPDQKMRFVLENPPFGTPWGGKD 302 Query: 306 --EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + +++V++E+ GE R+ GLPK +D +LF+ +KL + GRAAI+ + S Sbjct: 303 AKQGQEESVKEEYLKGESSRWPAGLPKTNDAQLLFIQSALSKL----DDNGRAAIIENGS 358 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G SGES++RRWLLEND ++ IVA+PTDLF+ T +ATY+WILS K+++R+GKVQ Sbjct: 359 SLFTGNTASGESQVRRWLLENDYLDTIVAMPTDLFYNTELATYIWILSKNKSQKRKGKVQ 418 Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 I+AT+++ +R GKK+ + + R QI +Y S++ D F YR V++ Sbjct: 419 FIDATNIYEKLRKPLGKKKNEFSKENREQITKLYTDFVENDISQIHDNTEFIYREYTVMQ 478 Query: 483 PLRMSFILDKTGLARLEADI-------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 PL+ S+ + + + ++ ++ + +L ++ +K + + + Sbjct: 479 PLQRSYAITEQRIEKMLPNLNSFFDPVKFNELQESNKKLSARDVKKLTKFKKNKPIYDQL 538 Query: 536 VKESIKSNEAKTLKVK--------------ASKSFIVAFINAFGRKDPRADPVTDVNGEW 581 + + K K K + ++ + D A+ D G Sbjct: 539 ISILRDNISDKIYKSPESFAPVAENLLSNIIDKKLLKKVVDGLSQMDKSAEIQNDKKGNI 598 Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641 I D + + E V I+ Y +EV P + DA K K + + G EI F R+F Sbjct: 599 IYDKDTADTEIVNIKTPIEQYMAKEVLPFISDAKAFFEEDLGKKKPVIKTGAEIPFTRYF 658 Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 Y+YQ + ++ + + +E I+ + + Sbjct: 659 YRYQMPQSVEKLQNMIDNLEQSISVEMNNLF 689 >gi|269123431|ref|YP_003306008.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112] gi|268314757|gb|ACZ01131.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112] Length = 725 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 210/727 (28%), Positives = 350/727 (48%), Gaps = 80/727 (11%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++RR + +EP ++ + + Sbjct: 11 NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 D+ + A G FYNTS + L L N + N E Y+ FS+N K I + FDF++ Sbjct: 71 DVTKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ ++ + + M ++E +IR+F Sbjct: 131 QVTKMTDAGILGSVIEKFTSSELNLSPYDEKNSSGDIIKKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRD++ L + + P K ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDLIELMADITMYPIMDKIKNG---TYSIYDGACGTLGMGTVAEERLK 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE+ PET+A+ A +LI+ ++D S N+ GSTLS D + Sbjct: 248 AFAKENDKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDRTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNIIDRRFVRNYKEQDDFRMIPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 363 QLLFLLNNISKMKE-TEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+WILSNRK E R+GK+QLINA + T++R N GKK ++ R IL Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINANGIKTALRKNMGKKNCEFSEADREFIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 + Y+ E ++S++ FGY ++ V RPLR + + + L +E ++ Sbjct: 482 NQYLKFEENEYSKIFLNDEFGYYKVVVERPLRQAVLCNAENLKEIEEELKKIRAFSGKID 541 Query: 503 -----------TWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550 T + L +S ++ L+ + + + E + K + Sbjct: 542 KKILEDSFIKGTATSIKELEKSENIEAYLEVLKLMNKEEKYLDYVAFEKDFNKHLKKKNI 601 Query: 551 K---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605 K SK + +D A D G I D +L + E++P + I+++ + Sbjct: 602 KGASLSKFVSTGLLGNMIIRDESAVIQKDSKGNVIVDPDLRDTESIPMTFEGGIEEFIKK 661 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV P+ DA++ D+ ++GYEINF ++FY+ + ++DI + +K +E Q Sbjct: 662 EVLPYHADAFV--------DESKTQIGYEINFTKYFYKAKELESVEDIVSRIKELERQSD 713 Query: 666 TLLEEMA 672 ++ + Sbjct: 714 GMMASIL 720 >gi|255102541|ref|ZP_05331518.1| type I restriction-modification system specificity subunit [Clostridium difficile QCD-63q42] Length = 725 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 213/727 (29%), Positives = 349/727 (48%), Gaps = 80/727 (11%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++RR + +EP ++ + + Sbjct: 11 NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 D+ + A G FYNTS + L L N + N E Y+ FS+N K I + FDF++ Sbjct: 71 DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ EL+ + M ++E +IR+F Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDV+ L + + P K+ ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 D + + GQE+ PET+A+ A +LI+ ++D S N+ GSTLS+D + Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 303 GQHFDFMLSNPPYGKSWKMDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 363 QLLFLLNNISKMKE-TELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+W+LSNRK E R+GK+QLINA + TS+R N GKK ++ RR IL Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 + Y+ E ++S++ FGY ++ V RPLR + + + + +E ++ Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541 Query: 503 -----------TWRKLSPLHQ----SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 T + L + +L++L+ M + + Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601 Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVR 605 SK + +D A+ TD G I D L + E++P I ++ + Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV P+ DA++ D+ ++GYEINF ++FY+ + ++DI +K +E + Sbjct: 662 EVLPYHEDAFV--------DESKTQIGYEINFTKYFYKAKKLENVEDIVCRIKELEKRSD 713 Query: 666 TLLEEMA 672 ++E + Sbjct: 714 GMMETVL 720 >gi|325662103|ref|ZP_08150721.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471552|gb|EGC74772.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium 4_1_37FAA] Length = 712 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 221/713 (30%), Positives = 341/713 (47%), Gaps = 67/713 (9%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 ++ NFIW A L G ++ + VI+P ++RR ECALEPT+ V ++ A N Sbjct: 19 STEVNFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEPTKDKVVAQFKA--NPNYP 76 Query: 69 LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF----EDFDFSS 122 ++ +++G+ FYNTSE++L+ L + N N ++Y+ SFS N + I + DF Sbjct: 77 AKAMYRISGFQFYNTSEFTLAELINDADNLAANFKAYLQSFSPNVQEIIVSAEKGLDFYK 136 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I +++K L + K FS ++L+P T+ + M I+E LIRRF + A D T RD Sbjct: 137 QIDKMDKNDRLLSVVKAFSELDLNPRTIDNVKMGYIFEDLIRRFSE--NAEAGDHYTGRD 194 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 ++ L +LL + G + T+ D CGTGG L+ + N + + Sbjct: 195 IIKLMVNILLAEGCDDIFDD-GKVITVLDQACGTGGMLSTSYNFIKRYNPTADV----RL 249 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQE+ PE++A+C+A MLI+ ++NI T+ KD F G + + + NPPFG Sbjct: 250 FGQEINPESYAICLAEMLIKGQN-------AENICYQDTMKKDRFAGTKMRFVIENPPFG 302 Query: 303 KKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 W E + AV E+ G GR+G GLP D MLFL +KL+ GRA Sbjct: 303 TPWGGKDAAEGVEKAVNDEYVKGFDGRWGAGLPGSGDMQMLFLQSAIDKLDDNF---GRA 359 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ + SPLF G SGES+IRRWLLENDLIEAI++L +DLF+ T I TY+W+LS K Sbjct: 360 AIIENGSPLFTGGTTSGESQIRRWLLENDLIEAIISLSSDLFYNTGIITYIWVLSKNKRA 419 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 ER+GK+QLI+AT +R G KR I D R+ I +Y EN ++S++ + F Y Sbjct: 420 ERKGKIQLIDATSFCHKLRRVLGNKRNEITPDDRKVITKLYAEFENNEYSKIYNNEEFIY 479 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG----- 530 R V++P++ S+ + + + + + L + L+ + + + Sbjct: 480 REYTVMQPMQRSYGISTVRIESMISKGSLATLYDAAKVEELEKSENLTGKEQKKLCSMKE 539 Query: 531 --------------------WAESFVKESIKSNEAKTLKV----------KASKSFIVAF 560 + + + + +K I Sbjct: 540 NYGVYEYILSRLRAESSEQIYYSPNEFIPVLTEILLQNNLPVVQSNEVVKTINKKLIERI 599 Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIF 620 + + D A+ D G I D + E + ESI +Y REV P VPDA Sbjct: 600 ADGLSQMDKAAEIQRDKKGNIIFDKETKDTEVIKIEESIDEYMEREVLPFVPDAVAFFEE 659 Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 + K I + G EI F R+FY+YQ ++ +E I+ + + Sbjct: 660 RMDLKKPIIKTGAEIPFTRYFYKYQTPLSSTVLEDRFIELEKAISDQVRSIFG 712 >gi|68535974|ref|YP_250679.1| putative DNA restriction-modification system, DNA methylase [Corynebacterium jeikeium K411] gi|68263573|emb|CAI37061.1| putative DNA restriction-modification system, DNA methylase [Corynebacterium jeikeium K411] Length = 644 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 222/676 (32%), Positives = 341/676 (50%), Gaps = 46/676 (6%) Query: 7 SAASLA-NFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 S A L + +W A+ L + D+G ILP T+LRRLEC L PT+ V + + Sbjct: 2 STAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILAPTKDEVLDLVWSLQE 61 Query: 65 SNIDLESFVKVA----GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDF 118 E G SFYN+S L+ + + L Y+ +FS + + +++ F Sbjct: 62 EGFSDEMIDWEVQTRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVDAFSASVRDVWDAF 121 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF+ + L+ A L+ + K+F+ I++ + +PD M +++EH++ + + A F Sbjct: 122 DFAVKMKTLDSASRLWPVVKHFATIDMSMEALPDAQMGDLFEHVMYKAFDTKGKAAGAFY 181 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRD + L +L DD G RT+YDPT GTGG L A + + ++ Sbjct: 182 TPRDAIRLMVDILFASDDVGLTAD-GASRTVYDPTAGTGGMLLVAARALKELNPDIEV-- 238 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 V GQEL +A+ A +LI+ E D I+ G TL DL+ G++F Y LSN Sbjct: 239 --VLAGQELMSTGYAIGKADLLIQGGEPDA-------IRHGDTLLTDLYEGEQFEYILSN 289 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--GGGRA 356 PPFG WE + +V+++ K RF GLP DG MLFL H+A+KL GGR Sbjct: 290 PPFGMDWEVQQKSVKEQAK-VPGSRFSHGLPGKDDGQMLFLAHVASKLMPAGPNGAGGRG 348 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+V + SPLF G SG +IR WLLE+DL++AI+ LPT++F+ T I+TY+WIL K E Sbjct: 349 AVVSNGSPLFTGAPESGPDKIRAWLLESDLVDAIIQLPTNMFYGTGISTYVWILDTNKEE 408 Query: 417 ERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 R+G VQLI+A++ W+ + G+KRR + + R+++L+ Y E+ + S++L G+ Sbjct: 409 HRKGFVQLIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAGFEDTEISKVLTPADLGF 468 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 R +KV + R+ + ++R+ + + P H D+ + Sbjct: 469 RDVKVTKQKRLRVGVTPEAVSRV---LEHKSAVPEHAEVLADVADVKFNDLPE------- 518 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595 AK VK I + A G D A+P D G+ I D+ + E +P Sbjct: 519 ----ALKAAAKKRGVKMLAGMIDEVLEAVGVPDENAEPSVDRKGKPILDSAFSMTERIPL 574 Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655 E + + REV P PD D+E +VGYEI F R FY+ P R L++IDA Sbjct: 575 TEDVDAHMEREVLPFAPD--------VTWDEEAAKVGYEIPFKRVFYRPTPVRSLEEIDA 626 Query: 656 ELKGVEAQIATLLEEM 671 ++ V ++A E+ Sbjct: 627 DVAAVMGRLAEKFAEV 642 >gi|319957036|ref|YP_004168299.1| n-6 DNA methylase [Nitratifractor salsuginis DSM 16511] gi|319419440|gb|ADV46550.1| N-6 DNA methylase [Nitratifractor salsuginis DSM 16511] Length = 599 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 236/689 (34%), Positives = 349/689 (50%), Gaps = 108/689 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT F A+ IW A L GD+K +D+GKVILP T+LRRL+ L PT+ V Sbjct: 1 MTNFKQK----ADLIWDIAGLLRGDYKRSDYGKVILPLTVLRRLDAVLAPTKEKVLAALP 56 Query: 61 AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 N K+AGY+F+N S + + + N NL +YI FS NA+ I E Sbjct: 57 RVEKMSENAKDLYLNKIAGYNFHNRSRFDFAKIVADPNNVAMNLRNYINGFSSNAREIIE 116 Query: 117 DFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F+F I R++ + LLY++ K F+ + D V M I+E LIR+F + +E A Sbjct: 117 YFNFDDQIDRMDDPKSDLLYQVVKAFAEMPF--DDVDSMQMGYIFEELIRKFAEQSNETA 174 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR+V+ L LL + D +FK G+++TLYDP CGTGG L+ NH+ Sbjct: 175 GEHFTPREVIELMVNLLFNSDREIFK--EGIVKTLYDPACGTGGMLSIGENHIKRLNPDA 232 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 K+ GQE+ PE++A+C + LI+ NI+ G+T + D ++F Y Sbjct: 233 KLE----LFGQEINPESYAICKSDTLIKGENP-------SNIKFGNTFTVDGLRDEKFDY 281 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG +W+K ++ E++N G GRFG GLP+I+DGS+LFL H+ +K++ G Sbjct: 282 MLSNPPFGVEWKKAAKTIKAEYENLGFAGRFGAGLPRINDGSLLFLQHMISKMKP---EG 338 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 R IV + SPLF G+AGSGES IRRW++END +EAIVALP LF+ T IATY+W+L+N+ Sbjct: 339 SRIGIVFNGSPLFTGQAGSGESNIRRWIIENDWLEAIVALPDQLFYNTGIATYIWVLNNQ 398 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K + RGK+QLINAT G K + ++ +R + Sbjct: 399 KDAKCRGKIQLINAT---------GSKDEALMEEGKRD----FNRFWE------------ 433 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 K+ R L + + + + ++ L+ F + Y W Sbjct: 434 -----KMPRSLGDK----RKRIPTNDDERGINYITKLYGEFEEGEFVKIFPNDYFGYWRV 484 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593 + + +D + VTD G PD L + EN+ Sbjct: 485 TVERPL---------------------------RDEAGNIVTDTKGRPKPDKELRDTENI 517 Query: 594 PYL----------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 P+L +SI++YF REV PHVPDA+I D+ ++GYEINF+++FY+ Sbjct: 518 PFLREDEEGNLVPQSIEEYFEREVLPHVPDAWI--------DESKTKIGYEINFDKYFYE 569 Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMA 672 ++P R L I A++ +E L ++ Sbjct: 570 FKPLRSLDAIRADILALEESSRELERQVL 598 >gi|260891565|ref|ZP_05902828.1| hypothetical protein GCWU000323_02780 [Leptotrichia hofstadii F0254] gi|260858673|gb|EEX73173.1| type I restriction-modification system specificity subunit [Leptotrichia hofstadii F0254] Length = 725 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 219/728 (30%), Positives = 354/728 (48%), Gaps = 82/728 (11%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VI+P T++RR + +E ++ + E Sbjct: 11 NKLISFIWSVADDCLRDVYVRGKYRDVIIPMTVIRRFDAIIESKKTNIMEVKEMAETQGW 70 Query: 68 DLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNN----LESYIASFSDNAKAIFEDFDFSS 122 D+ + G FYNTS + L L R N E Y+ FS+N K I + FDF++ Sbjct: 71 DVAKTLDTATGLPFYNTSNFCLKDLKYETNRQNLKRSFEEYLNGFSENIKEILQKFDFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ EL+ + M ++E +IR+F Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSYGEVIRKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDV+ L + + P K+ ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDVIELMADIAMYPVMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE+ PET+A+ A +LI+ ++D S N+ GSTLS D + Sbjct: 248 AFAKENSKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDKTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDRRFVRNYKEQDDFRMIPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 363 QLLFLLNNISKMKE-TEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEKDLIEAIIQLP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+WILSNRK E+R+GK+QLINA+ + TS+R N GKK ++D R+ IL Sbjct: 422 ENMFYNTGITTYIWILSNRKEEKRKGKIQLINASGIKTSLRKNMGKKNCEFSEDNRQFIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG------------------- 494 Y++ E ++S++ FGY ++ V RPLR + + D Sbjct: 482 KQYLNFEENEYSKIFSNDEFGYYKVVVERPLRQAVLCDANNIKEIEEELEKIGVLSGAID 541 Query: 495 ---LARLEADITWRKLSPLHQSF----WLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 LA T + L +S +L++LK +M+ Y +F K K + K Sbjct: 542 KKVLAESFIKGTSSSMKELEKSENVNTYLEVLK-LMKSDEEYLNYAAFEKAFNKHLKKKD 600 Query: 548 LK-VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFV 604 +K SK ++ KD A D G + D+ L + E++P + I ++ Sbjct: 601 IKGASLSKLASTGLLSRMIVKDEEAAIQKDSKGNVVADSELRDTESIPMTFEGGIDEFIK 660 Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664 +EV P+ DA++ D+ ++GYEINF ++FY+ + +++I +K +E Q Sbjct: 661 QEVLPYHADAFV--------DESKTQIGYEINFTKYFYKAKELESVEEIVNRIKELERQS 712 Query: 665 ATLLEEMA 672 ++ + Sbjct: 713 DGMMASIL 720 >gi|283796107|ref|ZP_06345260.1| type I restriction-modification system methyltransferase subunit [Clostridium sp. M62/1] gi|291076321|gb|EFE13685.1| type I restriction-modification system methyltransferase subunit [Clostridium sp. M62/1] Length = 712 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 232/698 (33%), Positives = 344/698 (49%), Gaps = 57/698 (8%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W A L G + + VI+P ++RR ECALE T+ AV KY N+ Sbjct: 24 LVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEETKDAVVAKYKQ--NPNLPAALLC 81 Query: 74 KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKA 130 +V+ Y FYNT+E++L L S + +NL+SYI FS N + I E FS+ I +++K+ Sbjct: 82 QVSKYPFYNTNEFTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLKFSTQIDKMDKS 141 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 LY + K FS ++L+P V M I+E +IRRF + A D TPR+V+ L + Sbjct: 142 NRLYSVVKKFSDLDLYPAHVDSMKMGYIFEDIIRRFSE--NAEAGDHYTPREVIRLMVNV 199 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 LL G I T+ D CG+GG L+ + + + + GQE+ PE Sbjct: 200 LLAEGCNDLLTDEGKIATVLDAACGSGGMLSTTYDFLRRKNPY----VDVRLFGQEINPE 255 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW----- 305 ++A+C+A MLI+ + ++ +TL D F ++ + NPPFG W Sbjct: 256 SYAICLADMLIKGQDVKNIM----GDEEANTLKTDCFPDQKMRLVIMNPPFGTPWGGKDA 311 Query: 306 -EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 E + V +E+K G GRF GLP D +LF+ H NKL GRAAI+ + SP Sbjct: 312 PEGQEKKVREENKKG--GRFEHGLPGTGDAQLLFMQHAINKL---DEKNGRAAIITNGSP 366 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LF+G SGES+IRRW+LE DLIEAI+ALPT LF+ T+I Y++ILS K +RRGKVQL Sbjct: 367 LFSGGTTSGESQIRRWMLEEDLIEAIIALPTQLFYNTDIGIYIFILSRNKRPDRRGKVQL 426 Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 INA D+W +R GKKRR I+ D ++I ++Y + E ++ ++ F Y+ V +P Sbjct: 427 INAVDMWKPLRKSLGKKRREIDRDSMKKITELYSNFEENQYCKIFPNEEFMYKEYAVYQP 486 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM-------MQQIYPYGWAESFV 536 L+ +LD + RL + S + + LK M ++ Y + FV Sbjct: 487 LQRRGVLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQKYLAGQQFV 546 Query: 537 KESI-----------------KSNEAKTLKVKA---SKSFIVAFINAFGRKDPRADPVTD 576 + + K+L K S S + D A D Sbjct: 547 ADVLNILEANRSDQVFMDYGEFEKYLKSLLGKVEGMSASRLTGIAMVLAVMDKTAVVQKD 606 Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG---RVGY 633 GE I DT + E + + + YF EV PHVPDA F EK + ++G Sbjct: 607 RKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWAYEFDPEKKESATNKEKLGA 666 Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 E F RFFY+Y+ K ++ A+ +E ++ + + Sbjct: 667 EFPFTRFFYEYKEPEKADNLLAQFMELEKSLSEKIAAL 704 >gi|259048037|ref|ZP_05738438.1| HsdM protein [Granulicatella adiacens ATCC 49175] gi|259035327|gb|EEW36582.1| HsdM protein [Granulicatella adiacens ATCC 49175] Length = 725 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 209/727 (28%), Positives = 352/727 (48%), Gaps = 80/727 (11%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++RR + +EP ++ + + Sbjct: 11 NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 D+ + A G FYNTS + L L N + N E Y+ FS+N K I + FDF++ Sbjct: 71 DVTKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENIKEILQKFDFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYEHLIRRFGS 168 + ++ +AG+L + + F+ EL+ + M ++E +IR+F Sbjct: 131 QLNKMTEAGILGSVIEKFTSSELNLSPYNEINSKGKIIKKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDV+ L + + P + ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDVIELMADIAIFPIMNKIMDG---TYSIYDAACGTLGMGTVAEERLK 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + K + +GQE+ ET+A+ A +LI+ ++D S + GST+S D + Sbjct: 248 ELAQKDKKNVSIHLYGQEVSAETYAIAKADLLIKGGDTD-----SSQVYYGSTISDDKTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDIRFVRNYKEQDEFRMIPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ +P Sbjct: 363 QLLFLLNNISKMK-NTEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQMP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+WILSNRK E R+GK+QLINA+ + T++R N GKK + D R IL Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINASGVKTALRKNMGKKNCEFSKDDREFIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 + Y++ E ++S++ FGY ++ V RPLR + + ++ + +E ++ Sbjct: 482 NQYLNFEENEYSKIFSNDEFGYYKVIVERPLRQAVVCNEKNIKEIEDELNKIGVFSGKID 541 Query: 503 -----------TWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550 T + L ++ ++ L+ + + + E + K V Sbjct: 542 KKVLEDSFIKRTASSIKELEKTENVEAYLETLKLMKSDERYLDYVAFEKDFNKHLKKRNV 601 Query: 551 K---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605 K +K + +D A D G I D NL + E +P + I+++ + Sbjct: 602 KGASLNKLVSTGLLANMIIRDESAVIQKDSKGNVIVDPNLKDTETIPRTFEGGIEEFIKQ 661 Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665 EV P+ DA++ D+ ++GYEINF ++FY+ Q +++I +K +E Q Sbjct: 662 EVLPYHVDAFV--------DESKTQIGYEINFTKYFYKAQELESVEEIVDRIKELERQSD 713 Query: 666 TLLEEMA 672 ++ + Sbjct: 714 GMMASIL 720 >gi|56750497|ref|YP_171198.1| type I restriction-modification [Synechococcus elongatus PCC 6301] gi|81299869|ref|YP_400077.1| type I restriction-modification [Synechococcus elongatus PCC 7942] gi|56685456|dbj|BAD78678.1| type I restriction-modification [Synechococcus elongatus PCC 6301] gi|81168750|gb|ABB57090.1| type I restriction-modification [Synechococcus elongatus PCC 7942] Length = 675 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 229/536 (42%), Positives = 321/536 (59%), Gaps = 29/536 (5%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 +L+ FIW A+ L GD+K +D+GK+ILPFT+LRRL+C L PT++AV E+ + + Sbjct: 99 QNLSAFIWSVADLLRGDYKQSDYGKIILPFTVLRRLDCVLAPTKAAVLEEKVLRESQGLA 158 Query: 69 LES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 E +K AG +F NTS L L + N NL +YI F+ + IF+ F+F I Sbjct: 159 PEPFLLKKAGQNFCNTSPLDLKQLMGDADNIGENLRAYIQGFTPAVRDIFDSFEFHLQID 218 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 RLEKAGLLY + + F+ I+LHPDTV + M ++E LIR+F +E A + TPR+V+ Sbjct: 219 RLEKAGLLYLVTERFAQIDLHPDTVSNAEMGLVFEELIRKFAELSNETAGEHFTPREVIR 278 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL DDA PG++R+LYDPT GTGG L+ A H+ + ++ V GQ Sbjct: 279 LMVNLLFIEDDAALT-QPGIVRSLYDPTAGTGGMLSVAEEHLTELNPSARL----VLSGQ 333 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL PE++A+C A MLI+ +NI G+TLS D ++ Y LSNPPFG +W Sbjct: 334 ELNPESYAICKADMLIKGQNI-------QNICFGNTLSDDKLPDAKYDYMLSNPPFGVEW 386 Query: 306 EKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 +K + V++E + G GRFGPGLP++SDGS+LFL+HL +K+ GG R IVL+ SP Sbjct: 387 KKIQKEVQREAEQLGYSGRFGPGLPRVSDGSLLFLLHLISKMRPASEGGSRLGIVLNGSP 446 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LF G AGSGESEIRR++LENDL+EAI+ALPTD+F+ T I+TY+WILSNRK R+GKVQL Sbjct: 447 LFTGGAGSGESEIRRYVLENDLVEAIIALPTDMFYNTGISTYIWILSNRKPASRKGKVQL 506 Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYRRI 478 I+A+ W +R G KR+ ++++Q +I ++ + E S++ FGYR I Sbjct: 507 IDASGFWQKMRKSLGSKRKELSEEQIAEITRLFGNFEEADRDGKPVSKIFRNEEFGYRTI 566 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYGWAE 533 V RP R + A K P+ + D P+ + + Y E Sbjct: 567 TVERPQR------DEAGNVVLAQRGKTKGQPVADASLRDTENVPLTEDVDTYFQRE 616 >gi|325297665|ref|YP_004257582.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170] gi|324317218|gb|ADY35109.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170] Length = 772 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 210/792 (26%), Positives = 353/792 (44%), Gaps = 146/792 (18%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 S + + IW A+D L F + VILP +LRRL+ LEPT+ V E+ Sbjct: 1 MDSSYSQIVALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKEDVEEEIKES 60 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 G NID + S++NTS+++L+ L S + +N Y+ +S+N + + Sbjct: 61 GVDNIDEGVLKDITRLSYFNTSKWTLNRLKSQASDNNDILYDNFVEYLNGYSENVRDVLR 120 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163 +F++ + +L L I + + ++ + M ++E L+ Sbjct: 121 NFEYYTKARKLADNDRLLSIIERITDPRINLTDKNTIDPDGLPLPALTNVGMGTVFEELL 180 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 RRF E +E A + TPRD + L L+ +P I TLYDP CG+GG LT++ Sbjct: 181 RRFNEENNEEAGEHFTPRDAISLLAHLVFEPVKENL----PKIITLYDPACGSGGMLTES 236 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++ D G + G E+ PET+A+C + ++I+ ++ I G+T++ Sbjct: 237 REYLLDLGVR---SAAIQLSGTEINPETYAICKSDLIIKGVDP-------SGIHWGNTIT 286 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PK 330 + F+ K F Y ++NPP+GK W++DK + E K RF L P+ Sbjct: 287 DNSFSDKSFGYMITNPPYGKSWKEDKKKIYHE-KMLLDHRFELTLTNYVGEEEVLDSTPR 345 Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 SDG +LFL+ +K++ G R A + + S LF G AGSGES IRR+L+E DL+E Sbjct: 346 TSDGQLLFLLEEVDKMKPLEFQPQGSRIASIHNGSSLFTGDAGSGESNIRRYLIEKDLVE 405 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 AI+ LP ++F+ T I+TY+W+L+N+K + R+GKVQLI+A+ + +R R + Sbjct: 406 AIIQLPNNIFYNTGISTYVWMLTNKKKDNRKGKVQLIDASQAFEKLRKNQGSRNCTIEPY 465 Query: 449 RRQILDIYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 R IL +Y + S++ D F Y + + RPLR+ + + + D Sbjct: 466 RTDILRVYTDFVEQEANEELKVGSKIFDDDDFRYYNVTIERPLRLRCQFNSLKIDEMLYD 525 Query: 502 ---------------------------------------ITWRKLSPL-------HQSFW 515 IT +KL+ L + Sbjct: 526 SSDIEVSKWLYNTYKDRVFSGLDSEIPTIKEYLNDQDIKITDKKLNKLISAKAWKDRQRL 585 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 + K +M+ + + + + + + AK LK++ S + + A D +A PV Sbjct: 586 MIAAKVLMKDMGTDVYMDYNLFSAKVNATAKVLKLETSAAELKTICRAMSVTDSKATPVV 645 Query: 576 D--------------------------------VNG---EWIPDTNLTEYENVPYLESIQ 600 G E+ D+ L + E +P E I Sbjct: 646 KKEHKVNSKDVVMLLETYGVPEEKLSDYGYHSVKKGMYVEFESDSELRDSEKIPVKEDIY 705 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 DYF REV P+V DA+I+ ++G EI+FN++FY+ P R L++ + ++ + Sbjct: 706 DYFQREVRPYVEDAWINL--------PQTKIGCEISFNKYFYKPTPLRSLEENERDIIAL 757 Query: 661 EAQIATLLEEMA 672 + Q ++ + Sbjct: 758 DEQSQGFIKSLF 769 >gi|258545846|ref|ZP_05706080.1| type I restriction-modification system, M subunit [Cardiobacterium hominis ATCC 15826] gi|258518862|gb|EEV87721.1| type I restriction-modification system, M subunit [Cardiobacterium hominis ATCC 15826] Length = 793 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 204/807 (25%), Positives = 318/807 (39%), Gaps = 159/807 (19%) Query: 3 EFTGSAASLANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + +++FIW A+ L + + VILPFT+LRRL+ LE T+ V E+ Sbjct: 7 QDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDVVLERKRF 66 Query: 62 FG--GSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIF 115 + AG +FYN SE++L+ L R++ +Y+ FS N + I Sbjct: 67 LDTHKVAEQDGALRMAAGQAFYNVSEFTLAKLKGSSQGQRLRDDFIAYLDGFSPNVQEIL 126 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEH 161 F+F + I +L + +L + +F E++ + + M ++E Sbjct: 127 TKFNFRNQIQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDVDGRIKLPALDNHGMGTVFEE 186 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LIRRF + +E A + TPRDVV L LL P + S +LYD TCGTGG LT Sbjct: 187 LIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVADRIESS---TYSLYDGTCGTGGMLT 243 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-- 279 A + + H + GQE+ ET+A+C A +L++ ++NI G Sbjct: 244 VAEEALHELAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENIVGGAD 298 Query: 280 -STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LP 329 STLS D F + F + +SNPP+GK W+ D + + + K RF + Sbjct: 299 KSTLSNDQFRSREFDFMISNPPYGKSWKTDLERMGGK-KEFNDPRFIVSHAGNNEFKLIT 357 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 + SDG ++F ++ K++ G R A+V + S LF G AG GES IRRW+LEND EA Sbjct: 358 RSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWCEA 417 Query: 390 IVALPTDLFFRTNIATYLWILS----------------------------NRKTEERRGK 421 I+ALP ++F+ T IATY+W+L+ + E G Sbjct: 418 IIALPLNIFYNTGIATYIWMLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELSAGD 477 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQIL---------------------------- 453 +Q I L + K D +I Sbjct: 478 IQRILDLYLGEAQETAESKWFDTEDFGYWKITVERPLRLKSQLSDERIEPLRFASGDEAL 537 Query: 454 --DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS----------------FILDKTGL 495 +IY + +S F R+ + LR + + Sbjct: 538 RAEIYATHGEALYS------EFAKRKQAIEAWLRDEDENEDDDGEDSGDDGEATTSRKSV 591 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555 + +++ + + + + + + K K Sbjct: 592 PAKRRKKLLDASTWQRDKGLMEVAQRAQKALGSAVFDDHNEFRARFDAALKAQGDKLGAP 651 Query: 556 FIVAFINAFGRKDPRADPVTDVNG---------------------------EWIPDTNLT 588 A A +D A PV E+ PD+ L Sbjct: 652 EKKAIYKAVSWRDEAAPPVIAKRSKLKAGEHFEPGFDGAYLETVGKDRFMVEYEPDSELR 711 Query: 589 EYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 + E VP E I +F REV PH PDA+I ++GYEI+F R+FY+ P Sbjct: 712 DTEQVPLKEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARYFYKPVP 763 Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673 R L +I A++ +E Q LL ++ Sbjct: 764 LRTLAEIRADILALEQQSEGLLHKIVG 790 >gi|331084241|ref|ZP_08333346.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401776|gb|EGG81353.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium 6_1_63FAA] Length = 684 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 204/707 (28%), Positives = 318/707 (44%), Gaps = 64/707 (9%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + SL +FIW A D L + D+ K+ILP ++RR + LEP AV + F Sbjct: 2 NQSTYNSLKSFIWGIANDCLVDVYDVGDYRKIILPMFVIRRFDAVLEPKHEAVMKAKEQF 61 Query: 63 GGSNIDL--ESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKAIFE 116 + I + VA +F N S+++L+ L + + Y+ FS+N + I Sbjct: 62 TKAGITELDAALASVAEQAFVNKSDFTLTDLKSRTNQQQLKKDFIEYLDGFSENVQVIIN 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYEHL 162 F + I RL + L + + F ++ + M ++E + Sbjct: 122 KFHIRNEIGRLSEQDRLGLLIEKFVDPRINLSNRPVLNEDGSVKIEALDNHTMGTLFEEV 181 Query: 163 IRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 IR F E + A TPRD+V L L P + + +YD CGTGG LT Sbjct: 182 IRMFNEETNVTDAGRHFTPRDIVELIADLAFIPVQDKIQST---TYRIYDGACGTGGMLT 238 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 H+ + +GQE ET+A+ A ML++ S I+ GST Sbjct: 239 VGDEHIKKLAKEQGKKVSIHLYGQENADETYAIARADMLVKG-----EGKESDQIRFGST 293 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGP---------GLPKI 331 +S D F + F + LSNPPFG W+ D A K+ RF +P I Sbjct: 294 ISDDKFAKEEFDFMLSNPPFGTPWKTDLKAWGIGKKDEISDSRFIINYDDNSEYSLIPDI 353 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 D MLFL + +K++ G R V + S LF G+AGSG S +RR++ E DL EAI+ Sbjct: 354 GDPQMLFLANNISKMKTTTELGSRIIEVHNGSSLFTGKAGSGPSNLRRYIFEQDLCEAII 413 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450 A+P ++F+ T I TYLW+L+N+K E+R+GKVQLI+AT + +R N G K + R Sbjct: 414 AIPENMFYNTGIGTYLWVLTNKKDEKRKGKVQLIDATSMKEPLRKNLGDKNCEMTQKMRE 473 Query: 451 QILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 +++++Y++ + + ++S+ FG+ +++V RPLR+ + L + + + Sbjct: 474 KVMELYLAFDKADSEYSKAFLNEEFGFYQVEVNRPLRLRVNVSDEALEEFKNSVEDDEFY 533 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 +M AK +K +K A F D Sbjct: 534 DF-----------LMTNEKDTESTNFNSFIGKLEKSAKKAGLKWTKKRENAIRKYFTTTD 582 Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626 AD V D G PD NL + E VP I +F EV P+V DA+I++ Sbjct: 583 ENADVVLDKKGNIEPDNNLKDTEQVPLLYDGGITGFFENEVKPYVEDAWINED------- 635 Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +GYE++F ++FY+ R L DI A+++ +E LL + Sbjct: 636 -SAVIGYELSFTKYFYKPVQLRDLSDIIADIRAIEQSTDGLLASIIG 681 >gi|144900419|emb|CAM77283.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 580 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 220/548 (40%), Positives = 325/548 (59%), Gaps = 24/548 (4%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + SL+ FIW A+ L GD+K +++G++ILPFT+LRRL+C LEPT++AV + Sbjct: 2 NQQSLSAFIWSVADLLRGDYKQSEYGRIILPFTVLRRLDCVLEPTKAAVLAELADKQAQG 61 Query: 67 IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ E ++ AG SF+NTS ++ L N R NL SY+ +FS + +FE F+F S Sbjct: 62 LNPEPFLLRKAGQSFFNTSPLNMKKLMGDQDNIRENLHSYVNAFSPAVRDVFERFEFDSM 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + RL K+GLLY++ + F+ I+LHPD V + M ++E LIR+F +E A + TPR+V Sbjct: 122 VERLAKSGLLYQVTEKFAQIDLHPDVVDNHQMGLVFEELIRKFAELSNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L LL DD + PG++RT+YDPT GTGG L+ A ++A+ ++ Sbjct: 182 IRLMVNLLFIEDDEVLS-KPGVVRTIYDPTAGTGGMLSIAGEYLAEHNPQARL----TVF 236 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL E++A+C A MLI+ + +I G+TLS D K F Y LSNPPFG Sbjct: 237 GQELNAESYAICKADMLIKGQDV-------ASIAFGNTLSDDGHPHKTFDYMLSNPPFGV 289 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + + KEH+ G GRFGPGLP++SDGSMLFL+HL +K+ +GG R IVL+ Sbjct: 290 EWKKVEKEIRKEHESQGFNGRFGPGLPRVSDGSMLFLLHLISKMRPIADGGSRFGIVLNG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WI+SNRK R+GKV Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIIGLPTDMFYNTGISTYVWIVSNRKPAHRKGKV 409 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476 QLI+A+ +W +R G KR+ +++ ++ ++ + SR+ D FGYR Sbjct: 410 QLIDASGMWQKMRKSLGSKRKELSESHIDEVTRLFGQFLESEQDGKPISRIFDNTAFGYR 469 Query: 477 RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 I V RP R G+ + KL + ++ ++ A++ Sbjct: 470 TITVERPERDDAGKIVVGVKGKQKGKPQADAKLRDTENVPLSEDVEAYFKREVLPHAADA 529 Query: 535 FVKESIKS 542 ++ Sbjct: 530 WIDHEKTK 537 >gi|296328650|ref|ZP_06871167.1| type I restriction-modification system methyltransferase subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154249|gb|EFG95050.1| type I restriction-modification system methyltransferase subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 725 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 210/726 (28%), Positives = 348/726 (47%), Gaps = 79/726 (10%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++ R + ++ ++ + + S Sbjct: 11 NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 70 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 D+ + + FYN S++ L L S N + N E Y+ FS+N K I E F+F++ Sbjct: 71 DIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ +L+ + M ++E +IR+F Sbjct: 131 QLTKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDVV L + + P K ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE+ PET+A+ A +LIR ++ +S N+ GSTLS D + Sbjct: 248 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF LP +SDG Sbjct: 303 GEHFDFMLSNPPYGKTWKTDLAVLGVGSDKDLKKNIIDKRFVTSYKEQEDFRMLPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 363 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+WILSNRK E R+GK+QLINA++L T +R N GKK + + R+ IL Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINASELKTPLRKNLGKKNCEFSKENRKIIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 D Y++ + + S++ F Y ++ V RPLR + I + + +E ++ Sbjct: 482 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELENIGFNSKINK 541 Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 T+ K S L L+ + + + E + + + K +K Sbjct: 542 ANLEGTFVKNSATVVKELEKTDNILAYLELLKDMKKDDKYLDFEEFEKLFNKKLKKYGLK 601 Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606 SK + +D A D G + D L + E VP+ I+++ +E Sbjct: 602 AASLSKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 661 Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666 V P+ DA++ D+ ++GYEINF ++FY+ + ++ I A +K +E + Sbjct: 662 VLPYHNDAFV--------DETKTQIGYEINFTKYFYKAKELENVETIVARIKELEKESDG 713 Query: 667 LLEEMA 672 +++ + Sbjct: 714 MMKNIL 719 >gi|291540899|emb|CBL14010.1| Type I restriction-modification system methyltransferase subunit [Roseburia intestinalis XB6B4] Length = 710 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 232/698 (33%), Positives = 341/698 (48%), Gaps = 57/698 (8%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W A L G + + VI+P ++RR ECALE T+ AV K+ N+ Sbjct: 24 LVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEATKDAVVAKHKQ--NPNLPAALLC 81 Query: 74 KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKA 130 +V+ Y FYN SEY+L L S + +NL+SYI FS N + I E FS+ I +++K+ Sbjct: 82 QVSKYPFYNYSEYTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLKFSTQIDKMDKS 141 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 LY + K FS ++L+P V M I+E +IRRF + A D TPR+V+ L + Sbjct: 142 NRLYSVVKKFSELDLYPTHVDSMKMGYIFEDIIRRFSE--NAEAGDHYTPREVIRLMVNV 199 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 LL G I T+ D CG+GG L+ + + + + GQE+ PE Sbjct: 200 LLAEGCNDLLTDEGKIATVLDAACGSGGMLSTTYDFLRRKNPY----VDVRLFGQEINPE 255 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW----- 305 ++A+C+A MLI+ + ++ +TL D F ++ + NPPFG W Sbjct: 256 SYAICLADMLIKGQDVKNIM----GDEEANTLKTDCFPDQKMRLVIMNPPFGTPWGGKDA 311 Query: 306 -EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 E + V +E+K G GRF GLP D +LF+ H NKL GRAAI+ + SP Sbjct: 312 PEGQEKKVREENKKG--GRFEHGLPGTGDAQLLFMQHAINKL---DEKNGRAAIITNGSP 366 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LF+G SGES+IRRW+L+ DLIEAI+ALPT LF+ T+I Y++ILS K +RRGKVQL Sbjct: 367 LFSGGTTSGESQIRRWMLKEDLIEAIIALPTQLFYNTDIGIYIFILSRNKRPDRRGKVQL 426 Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 INA D+W +R GKKRR I+ D +I ++Y + E K+ ++ F Y+ V +P Sbjct: 427 INAVDMWKPLRKSLGKKRREIDRDSMVKITELYSNFEENKYCKIFPNEEFMYKEYAVYQP 486 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM-------MQQIYPYGWAESFV 536 L+ +LD + RL + S + + LK M ++ Y + FV Sbjct: 487 LQRRGMLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQKYLAGQQFV 546 Query: 537 KESI-----------------KSNEAKTLKVKA---SKSFIVAFINAFGRKDPRADPVTD 576 + + K+L K S S + D A D Sbjct: 547 VDVLTILEANRSDQMFMDYGEFEKYLKSLLGKVEGMSASRLTGIAMVLAVMDKTAVVQKD 606 Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG---RVGY 633 GE I DT + E + + + YF EV PHVPDA F EK + ++G Sbjct: 607 RKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWVYEFDPEKKESPTNKEKLGA 666 Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 E F RFFY+Y+ K D+ + +E ++ + + Sbjct: 667 EFPFTRFFYEYKEPEKADDLLVQFMELEKSLSEKIAAL 704 >gi|149280203|ref|ZP_01886326.1| type I restriction-modification system methyltransferase subunit [Pedobacter sp. BAL39] gi|149229040|gb|EDM34436.1| type I restriction-modification system methyltransferase subunit [Pedobacter sp. BAL39] Length = 633 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 223/661 (33%), Positives = 339/661 (51%), Gaps = 60/661 (9%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFG-------GSNIDLESFVKVAGYSFYNTSEYSLST 90 T+LRR + LE ++S V +++ + +I K+ G FYNTS ++ Sbjct: 1 MTVLRRFDSVLENSKSDVLQEFESLKVRYKGEIPPSILSSKLEKITGQKFYNTSPFTFEK 60 Query: 91 LG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L + +L SYI FS N + IFE FDF I + A +LY I F+ + LHP Sbjct: 61 LKGAPDSIAQDLVSYINGFSPNVRRIFEYFDFEKEIFAMNDANILYLIVSEFAKVNLHPS 120 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V +R M I+E+LIRRF +E A D TPR+++ L LL DD F +R Sbjct: 121 LVSNRDMGLIFENLIRRFNELANETAGDHFTPREIIKLMVNLLFV-DDDKFLRDKYHLRK 179 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + DPTCGTGG L++A N++ S + +GQE +A + +LI+ SD Sbjct: 180 ILDPTCGTGGMLSEAKNYLKQNNSDIILLT----YGQEYNKRAYATAASDLLIKGRSSDK 235 Query: 269 RR---DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 I+ G TL++D F F Y ++NPPFG W+K K +++ + GRF Sbjct: 236 VGKYEQAEGEIKFGDTLTEDQFEDDTFDYLIANPPFGVDWKKQKPQIDR----DKTGRFE 291 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 GLP+++DG++LFL H+ +K E G R AIV S SP+F+G AGSGES+IR+W+ Sbjct: 292 AGLPRVNDGALLFLQHMISKFEPYEPKNKKFGSRLAIVFSGSPMFSGGAGSGESDIRKWI 351 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKK 440 +END +E I+ALP +F+ T I TY+W+L+NRK++ R+GK+QL +A + + +R +G K Sbjct: 352 IENDWLEGIIALPEQMFYNTGINTYIWVLTNRKSKNRKGKIQLFDAREFYIQMRKSQGSK 411 Query: 441 RRI-------------INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 RR + +Q +I+ Y +N +++ D FG+ R+ V RPLR+ Sbjct: 412 RRKIGEGEVDDGIIHVMEPNQIAEIITEYGQFDNTTNAKLFDNEDFGFTRVTVERPLRLK 471 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 + + LD ++ + +++ + + + K Sbjct: 472 YQMTAERKLAFLDACPH----------LLDDVQTIDKKLGQEILMDWNK---VLKDIKKI 518 Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607 + K S +V F N F KDP A V ++ D +L E+ENVP I YF EV Sbjct: 519 SEQKWSARELVIFRNVFTDKDPEAAKVQKGKNDFEADADLREFENVPLKIDIDTYFKNEV 578 Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667 P PDA+ D+ +VGYEINFNR+F++ +R L+ I+ EL +E +I L Sbjct: 579 LPFAPDAW--------TDRSKDKVGYEINFNRYFFKNAENRSLKVINKELSEIEKEILEL 630 Query: 668 L 668 L Sbjct: 631 L 631 >gi|315638762|ref|ZP_07893935.1| type I restriction-modification system DNA-methyltransferase [Campylobacter upsaliensis JV21] gi|315481171|gb|EFU71802.1| type I restriction-modification system DNA-methyltransferase [Campylobacter upsaliensis JV21] Length = 640 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 210/697 (30%), Positives = 340/697 (48%), Gaps = 93/697 (13%) Query: 7 SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + +FIW A+DL + + VILP T+LRRL+ LEPT+ V E Y Sbjct: 5 QFQPIISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDI 64 Query: 66 NIDL---ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + + + +FYN S ++L L N R N E+Y+ FS N K I F F Sbjct: 65 ADEDTLKDLLCDASKSTFYNHSNFTLKKLLNDPKNIRINFENYLDGFSGNIKDIISKFKF 124 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRF 166 + + L++A +LY + + F +++ + M ++E LIR+F Sbjct: 125 RNQLDTLDEAKILYGVIERFCSPKINLSMHDIKNDKGEILHKGLSNLGMGYVFEELIRKF 184 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E +E A + TPR+++ L T L+ P ++ ++YD CG+GG LT++ Sbjct: 185 NEENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKG---AFSIYDNACGSGGMLTESKEF 241 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + D + + +GQE+ PET+A+C A MLI+ D NI+ GSTLS+D Sbjct: 242 IIDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDK 294 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG----ELGRFGPGLPKISDGSMLFLMHL 342 G++F + L+NPP+GK WEKD+ + K G RF G+ SDG M+FL+++ Sbjct: 295 LGGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDARFQAGITSKSDGQMMFLLNM 354 Query: 343 ANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +K++ P G R A V + S LFN SG IR++++END +EAI+ALPT++F+ Sbjct: 355 LSKMKKPKENNGLGSRIASVHNGSSLFNSD--SGMVAIRKYIMENDFLEAIIALPTNMFY 412 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456 T I T++WIL+N KT+ ++GKVQLINAT +T ++ G+K+ + +I +++ Sbjct: 413 NTGIPTFIWILTNNKTKAKKGKVQLINATKEAYYTKMKKSLGQKQNEMTKTHIDKITELF 472 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 ++ ++ + FGY +I + RP + +L+ LE + + Sbjct: 473 LTNIENDDCKIYNNDEFGYTKITIERPKSIEILLNDEKFQALEQ-----------KDELV 521 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 LK + + E F+ L VK K+ I Sbjct: 522 SKLKELEANPQDFTSKEDFINF---------LDVKLKKAEENLLI--------------- 557 Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635 D++ T E +P + IQ Y+ EV P+VP+++I +GYEI Sbjct: 558 -------DSDKTNNTEKIPLTQDIQSYYENEVKPYVPNSWIAWESKA--------IGYEI 602 Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 FN++FY Y P R L+ ID +L+ +E + LL+++ Sbjct: 603 LFNKYFYTYTPPRSLESIDKDLQDLEQETQDLLKQIL 639 >gi|120601538|ref|YP_965938.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4] gi|120561767|gb|ABM27511.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4] Length = 580 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 232/538 (43%), Positives = 319/538 (59%), Gaps = 29/538 (5%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + SL+ FIW A+ L GD+K +++G+VILPFT+LRRL+ LE T+ AV E+ + Sbjct: 2 NQQSLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDSVLESTKVAVLEELESRQKLG 61 Query: 67 IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 I + ++V+G SF+NTS + L + NL SY+ FS + IFE F+F + Sbjct: 62 IAPDPFLLRVSGQSFFNTSPLDMKKLIGDQDHIGENLYSYLNGFSPEVRDIFERFEFHAQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I RL KAGLLY++ + F+ + LHPD V + M I+E LIR+F +E A + TPR+V Sbjct: 122 IDRLNKAGLLYQVAERFAQVNLHPDEVDNHQMGLIFEELIRKFAELSNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L L+ DD + PG++RT+YDPT GTGG L+ A ++ D ++ Sbjct: 182 IRLMVNLIFIEDDDILS-KPGVVRTIYDPTAGTGGMLSIAGEYLDDHNPDARL----TMS 236 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL PE++A+C A MLI+ + NI G+TLS D GK F Y LSNPPFG Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------SNITFGNTLSDDGHAGKHFDYMLSNPPFGV 289 Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + V KEH+ G GRFGPGLP+ISDGSMLFL+HL +K+ GG R IVL+ Sbjct: 290 EWKKVEKEVRKEHEQQGFNGRFGPGLPRISDGSMLFLLHLISKMRPAAEGGSRFGIVLNG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T I+TY+WI+SNRK R+GKV Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGISTYVWIVSNRKAAHRKGKV 409 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476 QLI+A+ +W +R G KR+ ++DD +I+ +Y K SR+ + FGYR Sbjct: 410 QLIDASAMWQKMRKSLGSKRKELSDDHISEIVRLYGEFAEAKLDGKPVSRIFNSSDFGYR 469 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYGWAE 533 I V RP R + K P+ S D P+ + + Y E Sbjct: 470 TITVERPTR------DEAGNIMLGQRGKAKGKPVPDSKLRDTENVPLHEDVEAYFKRE 521 >gi|288986937|ref|YP_003456900.1| N-6 DNA methylase [Allochromatium vinosum DSM 180] gi|288898316|gb|ADC64150.1| N-6 DNA methylase [Allochromatium vinosum DSM 180] Length = 580 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 219/489 (44%), Positives = 306/489 (62%), Gaps = 22/489 (4%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +L+ IW A+ L GD+K +D+GKVILPFT+LRRL+C LE T+ AV + A Sbjct: 2 NQTNLSALIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLESTKDAVLAEEKAKRQMG 61 Query: 67 IDLE-SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ E ++V+G SFYN S + L + + NL SY+ FSD+ + IFE FD + Sbjct: 62 VNPELFLLRVSGQSFYNVSPLDMKKLLGDPDHIKANLLSYLHGFSDDVRDIFEQFDVQTQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I RL K LLY++ + F+ ++LHP+ V + M ++E LIR+F +E A + TPR+V Sbjct: 122 IDRLAKTNLLYQVTERFAQVDLHPNRVSNSQMGLVFEELIRKFAELSNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L LL DDA+ PG++RTLYDPT GTGG L+ A ++ + ++ Sbjct: 182 IRLMVNLLFIEDDAVLA-KPGVVRTLYDPTAGTGGMLSVAGEYLEEHNPEARL----TMF 236 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL PE++A+C A MLI+ + NI G+T S+D + F Y LSNPPFG Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------ANIVFGNTFSEDGHPQRTFDYMLSNPPFGV 289 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + A+ +EH+ G GRFGPGLP++SDGS+LFL+HL +K+ +GG R IVL+ Sbjct: 290 EWKKVEKAIRQEHETLGFSGRFGPGLPRVSDGSLLFLLHLISKMRPAIDGGSRLGIVLNG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WILSNRK E RRG V Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGISTYVWILSNRKPEHRRGLV 409 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSREN-----GKFSRMLDYRTFGYR 476 QLI+A+ LW +R G KR+ ++D +I ++ SR+ FGYR Sbjct: 410 QLIDASGLWQKMRKSLGSKRKELSDAHIAEITRLFGECREAYDGKKPISRLFKNSDFGYR 469 Query: 477 RIKVLRPLR 485 I V RPLR Sbjct: 470 TITVERPLR 478 >gi|149373159|ref|ZP_01892028.1| type I restriction-modification [unidentified eubacterium SCB49] gi|149354261|gb|EDM42831.1| type I restriction-modification [unidentified eubacterium SCB49] Length = 600 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 226/680 (33%), Positives = 355/680 (52%), Gaps = 109/680 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M F A+ IW+ A L GD+K +D+GKVILP T+LRRL+C L P + V + Sbjct: 1 MNNFKEK----ADKIWEVANLLRGDYKRSDYGKVILPMTVLRRLDCVLAPKKQLVLDTLP 56 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF 115 K G + AG +F+N S++ + N +NL +YI FS +A+ I Sbjct: 57 KVEKLEGETAKDKVLNATAGMNFHNRSKFDFDKIIADPNNVASNLRNYINGFSTSAREII 116 Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 E F+F I R++ A +L+++ K F GI +++ M ++E LIRRF + +E Sbjct: 117 EYFNFDDQIDRMDDPKADILFRVVKAFQGI--KLESMDSMEMGYVFEDLIRRFAEQSNET 174 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A + TPR+V+ L +L + D + G+++TLYDP CGTGG L+ HV + + Sbjct: 175 AGEHFTPREVIKLMVNMLFNEDSEILT-KEGIVKTLYDPACGTGGMLSVGEQHVKELNPN 233 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ GQE+ PE++A+C + MLI+ N++ G+T + D ++F Sbjct: 234 AELK----VFGQEINPESYAICKSDMLIKGQNP-------SNVKFGNTFTVDGLEDEQFD 282 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 Y LSNPPFG W+K + ++ EH+N G GRFG GLP+I+DGS+LFL H+ +K++ Sbjct: 283 YMLSNPPFGVDWKKAQKIIKAEHENKGMQGRFGAGLPRINDGSLLFLQHMISKMKPS--- 339 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R AIV + SPLF+G AGSGESEIR+W++END +EAIVA+P LF+ T I+TY+W+++N Sbjct: 340 GTRIAIVFNGSPLFSGSAGSGESEIRKWIIENDWLEAIVAMPDQLFYNTGISTYVWLVNN 399 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 +K E+R+GKVQLINAT G K + D++ + + + Sbjct: 400 KKEEKRKGKVQLINAT---------GTKDEELIADEKLDVNRFWKKMDKS---------- 440 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 G +R ++ I + L + + K+ P +G+ Sbjct: 441 LGSKRKEIPENGNSKGIGFVSQLYGNFEENEFSKILPNE----------------YFGYW 484 Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592 V++ +K D + V G+ D+ L +YEN Sbjct: 485 RVTVEQPLK--------------------------DEKGQIV-KSKGKPKADSKLRDYEN 517 Query: 593 VPYL----------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642 +P+L ++I YF REV+PH+P+A+I D++ ++GYEINF ++FY Sbjct: 518 IPFLRTEKDGSLVPQTISAYFEREVTPHLPEAWI--------DEKKTKIGYEINFTKYFY 569 Query: 643 QYQPSRKLQDIDAELKGVEA 662 +++P R L DI A++ +E Sbjct: 570 EFKPLRSLTDIKADILALEN 589 >gi|34762433|ref|ZP_00143433.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887901|gb|EAA24969.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 722 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 206/726 (28%), Positives = 349/726 (48%), Gaps = 79/726 (10%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++ R + ++ ++ + + S Sbjct: 8 NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 67 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++ + + FYN S++ L L S N + N E Y+ FS+N K I E F+F++ Sbjct: 68 NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 127 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ +L+ + M ++E +IR+F Sbjct: 128 QLTKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 187 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDVV L + + P K ++YD CGT G T A + Sbjct: 188 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 244 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE+ PET+A+ A +LIR ++ +S N+ GSTLS D + Sbjct: 245 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 299 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 300 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 359 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 360 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 418 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK + + R+ IL Sbjct: 419 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 478 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 D Y++ + + S++ F Y ++ V RPLR + I + + +E ++ Sbjct: 479 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 538 Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 T+ K S L L+ + + + E + + + K ++K Sbjct: 539 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 598 Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606 +K + +D A D G + D L + E VP+ I+++ +E Sbjct: 599 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGDIEEFIKKE 658 Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666 V P+ DA++ D+ ++GYEINF ++FY+ + ++ I A +K +E + Sbjct: 659 VLPYHDDAFV--------DESKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 710 Query: 667 LLEEMA 672 +++ + Sbjct: 711 MMKNIL 716 >gi|226940440|ref|YP_002795514.1| HsdM [Laribacter hongkongensis HLHK9] gi|226715367|gb|ACO74505.1| HsdM [Laribacter hongkongensis HLHK9] Length = 613 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 225/570 (39%), Positives = 313/570 (54%), Gaps = 60/570 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + ++L+ FIW A+ L GD+K +++GKVILPFT+LRRL+C L T+ AV + + Sbjct: 2 NPSALSAFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLADTKPAVLAELQLRSDAG 61 Query: 67 IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ E ++ AG SFYNTS LS L + R NL +YI FS A+ IFE FDF + Sbjct: 62 VNPEPFLLRKAGQSFYNTSPLDLSKLLGDQDHIRENLYAYIQGFSPAARDIFERFDFFTQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + RL KAGLLY + + F+ I+LHP +V + M ++E LIR+F +E A + TPR+V Sbjct: 122 VERLAKAGLLYLVTEKFANIDLHPASVDNASMGLVFEELIRKFAEISNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L LL DD + ++RTLYDPT GTGG L+ A +A+ ++ Sbjct: 182 IRLMVNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVAGEFLAEHNPQARL----TLF 237 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL E++A+C A MLI+ + NI G+TLS D ++F Y LSNPPFG Sbjct: 238 GQELNDESYAICKADMLIKGQDV-------GNIVAGNTLSDDGHGARKFDYMLSNPPFGV 290 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + AV EH+ G GRFGPGLP++SDGSMLFLMHL +K+ GG R IVL+ Sbjct: 291 EWKKVEKAVRDEHERKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPASEGGCRFGIVLNG 350 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T IATY+W+LSN+K +R G+V Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGIATYIWVLSNKKPADRAGQV 410 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK------------------ 463 QLI+A W +R G KR+ ++D+ + ++ + Sbjct: 411 QLIDAGSFWQKMRKSLGSKRKEMSDEHIATVTRLFGDFTEAEMVTVLDAAGVPQGEPVLV 470 Query: 464 -------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 +R+ D FGY I V RP R + Sbjct: 471 TSTDPQPVAPEGGRLKRVPIARIFDNADFGYTTITVERPQR------DEAGNVVLGVKGK 524 Query: 505 RKLSPLHQSFWLDILK-PMMQQIYPYGWAE 533 +K P + D P+ I Y E Sbjct: 525 QKGKPQPDTSLRDTENVPLKDDIDAYFQRE 554 >gi|288928858|ref|ZP_06422704.1| type I restriction-modification system, M subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288329842|gb|EFC68427.1| type I restriction-modification system, M subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 682 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 206/712 (28%), Positives = 323/712 (45%), Gaps = 80/712 (11%) Query: 6 GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 +L FIW A D L F D+ K+ILP +LRRL+ LEPT V + Sbjct: 4 SQYNTLFTFIWNIANDVLVQAFNKGDYKKIILPMMVLRRLDILLEPTHQQVLQLKQQLTE 63 Query: 65 SNIDL----ESFVKVAGYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFE 116 +D ++ G ++ NTS +++ TL + N Y+ FS + + I E Sbjct: 64 QGVDETQQESMLIRRTGLAYCNTSRFTMKTLRGETNPVRLKQNFLEYLDGFSKDVQDIIE 123 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP--------------DTVPDRVMSNIYEHL 162 F + L G L +I + F+ E++ V + M ++E L Sbjct: 124 KFKLKQQVDNLSDTGRLGRIIEKFTDAEINLGKDPVLDAEGNERLPGVDNHTMGTLFEQL 183 Query: 163 IRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 +R+F S A + TPRD V L + + P + T+YD CGTGG L+ Sbjct: 184 LRKFNEANSVTEAGEHFTPRDYVALLADIAVLPVANKLRNG---TYTIYDGACGTGGILS 240 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR----RDLSKNIQ 277 A +AD + + +GQE++PET+A C A +++ + + + Sbjct: 241 IAEQRIADIAKEQRKRIKISLYGQEMQPETYATCKADLMLSSITNSFAYLNAGVRRERFF 300 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV---EKEHKNGELGRFGP-------- 326 GST+S D G +F +C+SNPPFG W+ D A + E ++ RF Sbjct: 301 CGSTISNDGHPGMKFDFCISNPPFGTPWKTDLQAWGLKDNEKQHITDPRFVLPQGYDPHN 360 Query: 327 ---GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 +P + D MLFL + ++++ G R V + S LF G AG GES +RR ++E Sbjct: 361 GLRFVPDVGDSQMLFLANNISRMKNDTELGTRIVEVHNGSSLFTGNAGGGESNLRRHIIE 420 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRR 442 ND +EAI+A+P F+ T I T++W+++NRK R GKVQLI+ATD+ T +R N G+K Sbjct: 421 NDWLEAIIAMPEKDFYNTGIGTFIWVVTNRKEPRRAGKVQLIDATDIKTPLRKNLGEKNC 480 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 N+ R+QI+ + E S++ FGY IKV RPLR+ + ++DI Sbjct: 481 ETNETDRQQIMQLLNRFEETPQSKIFANEEFGYWEIKVDRPLRLRVLP--------QSDI 532 Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 T KL+ Q ++ + W + K +K+ Sbjct: 533 TAGKLTSKEQEACRAAMQAVPNDTPLNNW-----------DAYAAALGKLTKTVKNKLRA 581 Query: 563 AFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIF 620 DP +PV D L + E VP I+ + REV P+ PDAY+ + Sbjct: 582 LITVPDPSCEPVAG-----EADRALRDTEQVPLTYPGGIEAFMQREVLPYAPDAYVAEDE 636 Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +V YE++F ++FY+ R + DI A++K +E + LL ++ Sbjct: 637 --------TKVVYELSFTKYFYKPVELRPIADIKADIKAIETETDGLLADIL 680 >gi|256845105|ref|ZP_05550563.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_36A2] gi|294785607|ref|ZP_06750895.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_27] gi|256718664|gb|EEU32219.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_36A2] gi|294487321|gb|EFG34683.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_27] Length = 725 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 206/726 (28%), Positives = 349/726 (48%), Gaps = 79/726 (10%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++ R + ++ ++ + + S Sbjct: 11 NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 70 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++ + + FYN S++ L L S N + N E Y+ FS+N K I E F+F++ Sbjct: 71 NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 130 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ +L+ + M ++E +IR+F Sbjct: 131 QLIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 190 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDVV L + + P K ++YD CGT G T A + Sbjct: 191 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 247 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE+ PET+A+ A +LIR ++ +S N+ GSTLS D + Sbjct: 248 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 302 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 303 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 362 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 363 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 421 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK + + R+ IL Sbjct: 422 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 481 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 D Y++ + + S++ F Y ++ V RPLR + I + + +E ++ Sbjct: 482 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 541 Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 T+ K S L L+ + + + E + + + K ++K Sbjct: 542 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 601 Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606 +K + +D A D G + D L + E VP+ I+++ +E Sbjct: 602 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 661 Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666 V P+ DA++ D+ ++GYEINF ++FY+ + ++ I A +K +E + Sbjct: 662 VLPYHDDAFV--------DESKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 713 Query: 667 LLEEMA 672 +++ + Sbjct: 714 MMKNIL 719 >gi|237741777|ref|ZP_04572258.1| type I restriction-modification system methylation subunit [Fusobacterium sp. 4_1_13] gi|229429425|gb|EEO39637.1| type I restriction-modification system methylation subunit [Fusobacterium sp. 4_1_13] Length = 722 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 206/726 (28%), Positives = 349/726 (48%), Gaps = 79/726 (10%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +FIW A+D L + + VILP T++ R + ++ ++ + + S Sbjct: 8 NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 67 Query: 68 DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++ + + FYN S++ L L S N + N E Y+ FS+N K I E F+F++ Sbjct: 68 NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 127 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168 + ++ AG+L + + F+ +L+ + M ++E +IR+F Sbjct: 128 QLIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 187 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +E A + TPRDVV L + + P K ++YD CGT G T A + Sbjct: 188 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 244 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE+ PET+A+ A +LIR ++ +S N+ GSTLS D + Sbjct: 245 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 299 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334 G+ F + LSNPP+GK W+ D + + KN RF +P +SDG Sbjct: 300 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 359 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL++ +K++ G R V + S LF G AG+G S RR+++E DLIEAI+ LP Sbjct: 360 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 418 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453 ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK + + R+ IL Sbjct: 419 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 478 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502 D Y++ + + S++ F Y ++ V RPLR + I + + +E ++ Sbjct: 479 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 538 Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 T+ K S L L+ + + + E + + + K ++K Sbjct: 539 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 598 Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606 +K + +D A D G + D L + E VP+ I+++ +E Sbjct: 599 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 658 Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666 V P+ DA++ D+ ++GYEINF ++FY+ + ++ I A +K +E + Sbjct: 659 VLPYHDDAFV--------DESKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 710 Query: 667 LLEEMA 672 +++ + Sbjct: 711 MMKNIL 716 >gi|57506068|ref|ZP_00371991.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis RM3195] gi|57015676|gb|EAL52467.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis RM3195] Length = 639 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 209/697 (29%), Positives = 340/697 (48%), Gaps = 93/697 (13%) Query: 7 SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + +FIW A+DL + + VILP T+LRRL+ LEPT+ V E Y Sbjct: 5 QFQPIISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDI 64 Query: 66 NIDL---ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + + + +FYN S ++L L N R N E+Y+ FS+N K I F F Sbjct: 65 ADEDTLKDLLCDASKSTFYNYSNFTLKKLLNDPKNIRINFENYLDGFSENIKDIISKFKF 124 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRF 166 + + L++A +LY + + F +++ + M ++E LIR+F Sbjct: 125 RNQLDTLDEAKILYGVIERFCSPKINLSMHDIKDDKGEILHKGLSNLGMGYVFEELIRKF 184 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E +E A + TPR+++ L T L+ P ++ ++YD CG+GG LT++ Sbjct: 185 NEENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKG---AFSIYDNACGSGGMLTESKEF 241 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + D + + +GQE+ PET+A+C A MLI+ D NI+ GSTLS+D Sbjct: 242 IIDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDK 294 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG----ELGRFGPGLPKISDGSMLFLMHL 342 G++F + L+NPP+GK WEKD+ + K G RF G+ SDG M+FL+++ Sbjct: 295 LGGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDSRFQVGITSKSDGQMMFLLNM 354 Query: 343 ANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +K++ P G R A V + S LFN SG IR++++END +EAI+ALPT++F+ Sbjct: 355 LSKMKKPKENNGLGSRIASVHNGSSLFNSD--SGMVAIRKYIIENDFLEAIIALPTNMFY 412 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456 T I T++WIL+N KT+ ++GKVQLINAT+ +T ++ G+K+ + +I +++ Sbjct: 413 NTGIPTFIWILTNNKTKAKKGKVQLINATNESYYTKMKKSLGQKQNEMTKTHIEKITELF 472 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 ++ ++ D FGY +I + RP + +L+ L+ + L Sbjct: 473 LTNRENDDCKIYDNAEFGYTKITIERPKSIEILLNDEKFQALK-----------DKDKIL 521 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 L+ + + E F+ L VK K+ I Sbjct: 522 AKLQELEISPQDFISKEDFINF---------LDVKLKKAEENLLI--------------- 557 Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635 D++ T E +P + +Q Y+ EV P++ +A+I E VGYEI Sbjct: 558 -------DSDKTNNTEKIPLTQDVQSYYENEVKPYMLNAWIA--------WESKVVGYEI 602 Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 FN++FY Y R L+ I+ +L+ +E + LL E+ Sbjct: 603 LFNKYFYTYTLPRSLEAINKDLQDLEQETQDLLREIL 639 >gi|332885122|gb|EGK05374.1| hypothetical protein HMPREF9456_02873 [Dysgonomonas mossii DSM 22836] Length = 600 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 224/681 (32%), Positives = 352/681 (51%), Gaps = 108/681 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M F A+ IW+ A+ L GD+K +D+GKVILP T+LRRL+C LEPT+ V + Sbjct: 1 MKNFREK----ADLIWRVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLP 56 Query: 61 AFG--GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 N + K+AG++F+N S+++ L N NL YI FS +A+ I E Sbjct: 57 KVSSLKDNAKDLALNKIAGFNFHNRSQFNFQKLVADPNNIGANLRQYINGFSTSAREIIE 116 Query: 117 DFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F+F I R++ +L+++ K F I+L + M ++E LIR+F + +E A Sbjct: 117 YFNFDDQIDRMDDPRTDILFRVVKAFQAIDL--SDMDSMEMGYVFEELIRKFAEQSNETA 174 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR+++ L LL D + + G+++T+YDP CGTGG L+ A +V + Sbjct: 175 GEHFTPREIIRLMVNLLFIEDREMLTQK-GIVKTMYDPACGTGGMLSIAEQYVKELNPDA 233 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 ++ GQE+ PE++A+C + MLI+ NI+ G+T + D ++F Y Sbjct: 234 ELK----VFGQEINPESYAICKSDMLIKGQNP-------GNIKFGNTFTVDGLDDEKFDY 282 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG W+K + ++ E +N G GRFG GLP+I+DGS+LFL H+ +K++ G Sbjct: 283 MLSNPPFGVDWKKAEKIIKTEAENKGMSGRFGAGLPRINDGSLLFLQHMVSKMK---GSG 339 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 R IV + SPLF G A SGES IR+W++END +EA+VA+P LF+ T I+TY+WI++N Sbjct: 340 TRIGIVFNGSPLFTGAAESGESNIRKWIIENDWLEAVVAMPDQLFYNTGISTYVWIVTNH 399 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K++ER+GK+QLINAT G K + + E +F R +D Sbjct: 400 KSKERKGKIQLINAT---------GTKDEELLKE---------GKLEFNRFWRKMDRS-L 440 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 G +R + I T + + + K+ P +G+ Sbjct: 441 GNKRKAIAENGNTKGIGFITQIYGNFQENEFCKILPNE----------------YFGYWR 484 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593 V++ ++ V D N + P+T+L YEN+ Sbjct: 485 VTVEQPLR---------------------------ENGKIVKDRNKQPKPNTSLRNYENI 517 Query: 594 PYL----------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 P+L ++I++YF EV PH+P+A+ID ++GYE+NF ++FY+ Sbjct: 518 PFLKKDANGKLIPQTIEEYFDAEVKPHLPEAWIDH--------SKTKIGYEVNFTKYFYE 569 Query: 644 YQPSRKLQDIDAELKGVEAQI 664 ++P R L DI A++ +E +I Sbjct: 570 FKPLRALADIRADILALEEEI 590 >gi|86153233|ref|ZP_01071437.1| putative type I restriction enzyme MjaXP M protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842959|gb|EAQ60170.1| putative type I restriction enzyme MjaXP M protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 636 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 215/696 (30%), Positives = 350/696 (50%), Gaps = 91/696 (13%) Query: 4 FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + NFIW A+DL + + VILP T++RR++ LEPT+ V + Y + Sbjct: 2 EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61 Query: 63 GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 +LES + + F+N S ++L TL N R N E+Y+ FS+N K I Sbjct: 62 KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163 F F + + LE++ +L+ + + F + + + M ++E LI Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+++ L T L+ P K+ +YD CG+GG LT++ Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + D + + +GQE+ PET+A+C A MLI+ + D +I+ GSTLS Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339 D +F + LSNPP+GK WE D+ + E K RF G+ SDG M+FL Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFL 350 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +++ +K++ G R A V + S LFN SG IR+ ++END +EAIVALPT++F+ Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFY 408 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456 T I T++WI++N+K E ++GKVQLINAT+ ++ ++ G K+ + + +I ++ Sbjct: 409 NTGIPTFIWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + + K ++LD FGY +I + +P + + D A+L+ + L Sbjct: 469 LENASSKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKIL 517 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 + L+ + Q + + E F+ K L VK KS I Sbjct: 518 EKLEQLEQNLQDFKNREEFI---------KFLGVKLKKSEENLII--------------- 553 Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635 D++ T E +P +IQ+Y+ EV P+V +++I E VGYEI Sbjct: 554 -------DSDKTNNTEKIPLKTNIQNYYDTEVKPYVANSWIA--------WESASVGYEI 598 Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 FN++FY Y P RKL++I++EL+ +E ++ LL+E+ Sbjct: 599 LFNKYFYIYTPPRKLEEINSELEKLEKEVQDLLKEI 634 >gi|121612129|ref|YP_001000444.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|167005387|ref|ZP_02271145.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|87249524|gb|EAQ72484.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|107770373|gb|ABF83710.1| putative type I restriction-modification system HsdM subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 636 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 215/696 (30%), Positives = 350/696 (50%), Gaps = 91/696 (13%) Query: 4 FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + NFIW A+DL + + VILP T++RR++ LEPT+ V + Y + Sbjct: 2 EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61 Query: 63 GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 +LES + + F+N S ++L TL N R N E+Y+ FS+N K I Sbjct: 62 KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163 F F + + LE++ +L+ + + F + + + M ++E LI Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+++ L T L+ P K+ +YD CG+GG LT++ Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + D + + +GQE+ PET+A+C A MLI+ + D +I+ GSTLS Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339 D +F + LSNPP+GK WE D+ + E K RF G+ SDG M+FL Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFL 350 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +++ +K++ G R A V + S LFN SG IR+ ++END +EAIVALPT++F+ Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFY 408 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456 T I T++WI++N+K E ++GKVQLINAT+ ++ ++ G K+ + + +I ++ Sbjct: 409 NTGIPTFIWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + + K ++LD FGY +I + +P + + D A+L+ + L Sbjct: 469 LENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKIL 517 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 + L+ + Q + + E F+ K L VK KS I Sbjct: 518 EKLEQLEQNLQDFKNREEFI---------KFLGVKLKKSEENLII--------------- 553 Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635 D++ T E +P +IQ+Y+ EV P+V +++I E VGYEI Sbjct: 554 -------DSDKTNNTEKIPLKTNIQNYYDTEVKPYVANSWIA--------WESASVGYEI 598 Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 FN++FY Y P RKL++I++EL+ +E ++ LL+E+ Sbjct: 599 LFNKYFYIYTPPRKLEEINSELEKLEKEVQDLLKEI 634 >gi|325104611|ref|YP_004274265.1| N-6 DNA methylase [Pedobacter saltans DSM 12145] gi|324973459|gb|ADY52443.1| N-6 DNA methylase [Pedobacter saltans DSM 12145] Length = 746 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 213/764 (27%), Positives = 359/764 (46%), Gaps = 111/764 (14%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M+ T L FI+ A+D L ++ + + VILP T++RRL+ LEPT+ V + Y Sbjct: 1 MSINTKDLDPLIRFIYSIADDHLINTYEPSKYKDVILPMTVIRRLDLVLEPTKDRVIDTY 60 Query: 60 LAFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKA 113 + +L+S +K +G +FYNTS ++L +L + N + N +Y+ FS N + Sbjct: 61 NKYKDKLDNLDSLLKSDKQGSGVAFYNTSPFTLKSLLNDSANIKANFINYLDGFSPNVQD 120 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 I F F + I L++A L+ + + F + I+L D +P M ++E L+RRF + Sbjct: 121 IISRFKFRNEIDTLDEAEKLFAVIQKFCSNKIDLSIDALPPLSMGYVFEDLLRRFNEATN 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 A TPR+++ L T ++ P ++ +YDP G+G LT++ N + D Sbjct: 181 AEAGRHFTPREIIELMTNIIFLPVKDKIQQG---SFLVYDPCAGSGAMLTESKNFMTDDT 237 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290 K + +GQE P +A+ + ML++ + D I GSTLS+ F Sbjct: 238 GKIKSKATIHLYGQENTPTIYAISKSDMLLKNEDPDK-------IVFGSTLSQYGFDNDL 290 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRF--------GPGLPKISDGSMLFLMH 341 +F + L+NPP+G W+ DKD + K RF +++DG ++F+MH Sbjct: 291 KFDFMLTNPPYGTSWKDDKDILTKAGGGKIVDRRFIIQKEYDADAATTRVNDGQLMFVMH 350 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + +K++ + G R A V + S LF G AG GESEIR+ ++E D++EA++ALP D+F+ T Sbjct: 351 MLSKMKE-TDLGSRIASVHNGSALFTGDAGQGESEIRKHIIEKDMLEAVIALPNDMFYNT 409 Query: 402 NIATYLWILSNRKTEERRGKVQLINATD---LWTSIRNEGKKRRIINDDQRRQILDIYVS 458 I T++ I++NRK E R+GKVQLINA + ++ G KR + + +++ ++Y+ Sbjct: 410 GIPTFILIITNRKPEHRKGKVQLINANNEAFFGKRAKSLGSKRNELKPEHIKKVTELYLE 469 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-------- 510 + S++ D FG+ +I V RP R + LD A + +L L Sbjct: 470 FKETPHSKIFDNNEFGFAQIIVHRPSRFAIQLDAKHTAEIRFASDNTELRKLIYAECGEQ 529 Query: 511 --------------------------HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544 +++ + + +A+ +S ++ Sbjct: 530 VYSSDAESRQAVENFVLEYFLNEEDSEDEEPAELVVANLNKKQKKIYAQVTDIKSWLRDK 589 Query: 545 AKTLKVKASKSF--------IVAFINAFGRK-----------------------DPRADP 573 +V A I AF F D +A+ Sbjct: 590 QLMQEVTAMAKEFGTEPLYDINAFNKKFKEYGKKNNLKYAAKDVKDIRKCITWFDKKAEA 649 Query: 574 VTD---VNG--EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 +G ++ D+NL + EN+P + IQ +F EV P PDA+ + E Sbjct: 650 EIKSVSKDGTINYVSDSNLKDTENIPLKQDIQAFFETEVLPFAPDAW--------WNPEE 701 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 ++GYEINFN++FYQY+ R+L +I ++ +E LL+E+ Sbjct: 702 TKIGYEINFNKYFYQYKAPRQLSEIAKDIFEIEKSADKLLKEIV 745 >gi|325289014|ref|YP_004265195.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271] gi|324964415|gb|ADY55194.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271] Length = 599 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 227/684 (33%), Positives = 349/684 (51%), Gaps = 105/684 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-- 63 + A+ IWK A+ L GD+K +D+GKVILP T+LRRL+C LEPT+ V + Sbjct: 2 KNFKEKADLIWKVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLPKVESL 61 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + K+AG++F+N S+ + L N NL +YI FS +A+ I E F+F Sbjct: 62 KESAKDIALNKIAGFNFHNRSQLNFDKLIADPNNVSVNLRNYINGFSSSAREIIEYFNFD 121 Query: 122 STIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 I R++ +L+++ K F I L + M ++E LIRRF + +E A + T Sbjct: 122 DHIDRMDDPKTDILFRVLKAFQEIGLT--DMDSMEMGYVFEDLIRRFAEQSNETAGEHFT 179 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+V+ L LL D + G+++TLYDP CGTGG L+ +V + ++ Sbjct: 180 PREVIRLMVNLLFIEDKDILT-QEGIVKTLYDPACGTGGMLSVGEQYVKELNPKAELK-- 236 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 GQE+ PE++A+C + MLI+ NI+ G+T + D ++F Y LSNP Sbjct: 237 --VFGQEINPESYAICKSDMLIKGQNP-------SNIKFGNTFTVDGLEEEKFDYMLSNP 287 Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG W+K + ++ E N G GRFG GLP+I+DGS+LFL H+ +K++ G R I Sbjct: 288 PFGVDWKKAEKIIKAEADNKGMNGRFGAGLPRINDGSLLFLQHMISKMK---LSGTRIGI 344 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V + SPLF G A SGES IR+W++END +EA++ALP LF+ T I+TY+WI++N K+EER Sbjct: 345 VFNGSPLFTGAAESGESNIRKWIIENDWLEAVIALPDQLFYNTGISTYIWIINNSKSEER 404 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 +GKVQLINAT G K + + + +F + +D G +R Sbjct: 405 KGKVQLINAT---------GAKDEELTKE---------GKLDFNRFWQKMDRS-LGDKRK 445 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 K+ I T L + + K+ P +G+ V++ Sbjct: 446 KIAENGNTKGIGFITQLYGNFEENEFVKIYPNE----------------FFGYWRITVEQ 489 Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL-- 596 +K N V G+ PDT+L +YEN+P+L Sbjct: 490 PMKENS----------------------------KVVKSKGQPKPDTSLRDYENIPFLKK 521 Query: 597 --------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 ++I++YF EV PH+ +A+ID ++GYEINF ++FY+++P R Sbjct: 522 GSDGNLIPQTIEEYFETEVKPHLLEAWIDH--------SKTKIGYEINFTKYFYEFKPLR 573 Query: 649 KLQDIDAELKGVEAQIATLLEEMA 672 L DI A++ +E + + + Sbjct: 574 ALADIKADILALEEKTLETEKTVL 597 >gi|299531530|ref|ZP_07044936.1| N-6 DNA methylase [Comamonas testosteroni S44] gi|298720493|gb|EFI61444.1| N-6 DNA methylase [Comamonas testosteroni S44] Length = 581 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 225/490 (45%), Positives = 308/490 (62%), Gaps = 23/490 (4%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + SL+ FIW A+ L GD+K +D+GKVILPFT+LRRL+C L T+SAV + Sbjct: 2 NQQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLTDTKSAVLAELAVKQKQG 61 Query: 67 IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ E ++ +G SFYNTS L TL + + NL SY+ +FS + +FE F+F Sbjct: 62 VNPEPFLLRKSGQSFYNTSALDLKTLLGDTDHIAQNLYSYVQAFSPAVRDVFERFEFHVQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + RL KAGLLY++ + F+ I+LHP+ V + M ++E LIR+F +E A + TPR+V Sbjct: 122 VERLAKAGLLYQVTEKFAQIDLHPNRVSNMQMGLVFEELIRKFSEISNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L L+ DDA+ PG++RT+YDPT GTGG L+ A ++ + H ++ Sbjct: 182 IRLMVNLIFIEDDAILS-KPGVVRTIYDPTAGTGGMLSVAGEYLTEHNPHARL----TVF 236 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL PE++A+C A MLI+ + +I G+TLS D T K F Y LSNPPFG Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------ASIAFGNTLSDDGHTAKHFDYMLSNPPFGV 289 Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + V KEH+ G GRFGPGL ++SDGSMLFL+HL +K+ GG R IVL+ Sbjct: 290 EWKKVEKEVRKEHEQQGYNGRFGPGLLRVSDGSMLFLLHLISKMRPAQEGGSRFGIVLNG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK E R+GKV Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGIATYVWIISNRKPEARKGKV 409 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK------FSRMLDYRTFGY 475 QLI+A+ +W +R G KR+ ++D I ++ K SR+ D FGY Sbjct: 410 QLIDASGMWQKMRKSLGSKRKELSDAHIEHITRLFGEFVEAKDADGKPLSRIFDNEDFGY 469 Query: 476 RRIKVLRPLR 485 I V RPLR Sbjct: 470 HSITVERPLR 479 >gi|265754308|ref|ZP_06089497.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA] gi|263235017|gb|EEZ20572.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA] Length = 658 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 233/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYL 60 +A L IW E L + + D VILPFTLLRRL+C L + + V E+ Sbjct: 2 TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61 Query: 61 AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116 +ID + + AGY FYNTS SLS L + NN ++Y+ FS N + I + Sbjct: 62 QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121 Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168 +F S + L + LL ++ K F I+L PD V + +M ++E +IR Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 V GA F TPRD+V L T + L + + G I ++YDP CGTGG LT + + Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD-GKIISVYDPCCGTGGILTLTKDTIE 240 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + ++ + GQEL +T+A+C + ++++ D +K I G TL D F Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F++ L+NPP+G W+++ D+V E + + RF PGLP SDG +LF +H+ +K++ Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G R I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP LF+ T IATYLW Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409 Query: 409 ILSNRKTEERRGKVQLINAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFS 465 I N+K E + KV LINA + +R N G K +++D R +I IY + E + Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +++D F Y I V RPLR+ + KT A L+ L+ + LD + Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQSEALANIVA---LDDIDTERTD 526 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581 + + ES K+K + I FG A V D N + Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVCETAPEVHVIPLDDNSDL 573 Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641 + DTNL +YE++P+ IQ+YF EV PDA++D+ E ++G E ++ F Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFTPDAWMDR--------EKDKIGCEFPISKLF 625 Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 Y+YQP R ++DI A+++ +E L + + Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658 >gi|212690634|ref|ZP_03298762.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855] gi|237725171|ref|ZP_04555652.1| N-6 DNA methylase [Bacteroides sp. D4] gi|212666734|gb|EEB27306.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855] gi|229436437|gb|EEO46514.1| N-6 DNA methylase [Bacteroides dorei 5_1_36/D4] Length = 658 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 233/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYL 60 +A L IW E L + + D VILPFTLLRRL+C L + + V E+ Sbjct: 2 TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61 Query: 61 AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116 +ID + + AGY FYNTS SLS L + NN ++Y+ FS N + I + Sbjct: 62 QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLKGFSPNIREILK 121 Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168 +F S + L + LL ++ K F I+L PD V + +M ++E +IR Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 V GA F TPRD+V L T + L + + G I ++YDP CGTGG LT + + Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD-GKIISVYDPCCGTGGILTLTKDTIE 240 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + ++ + GQEL +T+A+C + ++++ D +K I G TL D F Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F++ L+NPP+G W+++ D+V E + + RF PGLP SDG +LF +H+ +K++ Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G R I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP LF+ T IATYLW Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409 Query: 409 ILSNRKTEERRGKVQLINAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFS 465 I N+K E + KV LINA + +R N G K +++D R +I IY + E + Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +++D F Y I V RPLR+ + KT A L+ L+ + LD + Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQSEALANIIA---LDDIDTERTD 526 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581 + + ES K+K + I FG A V D N + Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETAPEVHVIPLDDNSDL 573 Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641 + DTNL +YE++P+ IQ+YF EV PDA++D+ E ++G E ++ F Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR--------EKDKIGCEFPISKLF 625 Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 Y+YQP R ++DI A+++ +E L + + Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658 >gi|148926925|ref|ZP_01810602.1| putative type I restriction enzyme M protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845009|gb|EDK22106.1| putative type I restriction enzyme M protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 636 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 212/697 (30%), Positives = 344/697 (49%), Gaps = 91/697 (13%) Query: 4 FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + NFIW A+DL + + VILP T++RR++ LEPT+ V + Y + Sbjct: 2 KQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61 Query: 63 GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 +LES + + F+N S ++L TL N R N E+Y+ FS+N K I Sbjct: 62 KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163 F F + + LE++ +L+ + + F + + + M ++E LI Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+++ L T L+ P K+ +YD CG+GG LT++ Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + D + + +GQE+ PET+A+C A MLI+ + I+ GSTLS Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGENP-------ERIKFGSTLS 291 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339 D +F + LSNPP+GK WE D+ + E K RF G+ SDG M+FL Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGLNSTCNDPRFSVGITSKSDGQMMFL 350 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +++ +K++ G R A V + S LFN SG IR+ ++END +EAIVALPT++F+ Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFY 408 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456 T I T++WI++N+K+E ++GKVQLIN T+ ++ ++ G K+ + + +I ++ Sbjct: 409 NTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + + K ++LD FGY +I + +P + + D A+L+ + L Sbjct: 469 LENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKIL 517 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 + L+ + Q + E F+ K L VK KS I Sbjct: 518 EKLQELEQNPQDFKNREEFI---------KFLGVKLKKSEENLII--------------- 553 Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635 D++ T E +P +IQ Y+ EV P+V +++I E VGYEI Sbjct: 554 -------DSDKTNNTEKIPLKTNIQGYYDTEVKPYVANSWIA--------WESASVGYEI 598 Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 F+++FY Y P RKL++I+ EL+ +E ++ LL E+ Sbjct: 599 LFSKYFYTYTPPRKLEEINNELEKLEKEVQDLLREIV 635 >gi|237709676|ref|ZP_04540157.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA] gi|229456312|gb|EEO62033.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA] Length = 658 Score = 554 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 233/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYL 60 +A L IW E L + + D VILPFTLLRRL+C L + + V E+ Sbjct: 2 TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61 Query: 61 AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116 +ID + + AGY FYNTS SLS L + NN ++Y+ FS N + I + Sbjct: 62 QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121 Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168 +F S + L + LL ++ K F I+L PD V + +M ++E +IR Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 V GA F TPRD+V L T + L + + G I ++YDP CGTGG LT + + Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD-GKIISVYDPCCGTGGILTLTKDTIE 240 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + ++ + GQEL +T+A+C + ++++ D +K I G TL D F Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F++ L+NPP+G W+++ D+V E + + RF PGLP SDG +LF +H+ +K++ Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G R I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP LF+ T IATYLW Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409 Query: 409 ILSNRKTEERRGKVQLINAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFS 465 I N+K E + KV LINA + +R N G K +++D R +I IY + E + Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +++D F Y I V RPLR+ + KT A L+ L+ + LD + Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQNEALANIVA---LDDIDTERTD 526 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581 + + ES K+K + I FG A V D N + Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETASEVHVIPFDDNSDL 573 Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641 + DTNL +YE++P+ IQ+YF EV PDA++D+ E ++G E ++ F Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR--------EKDKIGCEFPISKLF 625 Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 Y+YQP R ++DI A+++ +E L + + Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658 >gi|149175699|ref|ZP_01854318.1| type I restriction-modification [Planctomyces maris DSM 8797] gi|148845418|gb|EDL59762.1| type I restriction-modification [Planctomyces maris DSM 8797] Length = 580 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 224/674 (33%), Positives = 331/674 (49%), Gaps = 104/674 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L++FIW A+ L GD+K +++GKVILPFT+LRRL+C LEPT+ AV ++ +N Sbjct: 2 NQQQLSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEPTKDAVLKEKEKREAAN 61 Query: 67 IDLESFVKV-AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 I+ E F+K + FYNTS + L + R NL SYI SFSD+ + IFE F+F + Sbjct: 62 INPEPFLKKKSQQLFYNTSPLDIKKLMGDQDHIRENLFSYIESFSDSVRDIFECFEFHTQ 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + RL KA LLY + + F+ ++LHPD V + M ++E LIR+F +E A + TPR+V Sbjct: 122 VERLAKADLLYMVTEKFANVDLHPDVVSNAQMGLVFEELIRKFAELSNETAGEHFTPREV 181 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L LL DD PG++R+LYDPT GTGG L+ A H++ ++ V + Sbjct: 182 IRLMVNLLFIEDDDALT-KPGIVRSLYDPTAGTGGMLSIAEEHLSGQNPDARL----VMY 236 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL E++A+C A MLI+ + I G+TLS+D G+ F Y LSNPPFG Sbjct: 237 GQELNAESYAICKADMLIKGQDI-------SKIIHGNTLSEDGLPGEHFDYMLSNPPFGV 289 Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + +++EH+ +G GRFGPGLP++SDGS+LFLMHL +K+ +GG R IVL+ Sbjct: 290 EWKKIQKEIKREHQQDGFNGRFGPGLPRVSDGSLLFLMHLISKMRPAKDGGSRFGIVLNG 349 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SP LF T A E R V Sbjct: 350 SP--------------------------------LF--TGSAGS-------GESEIRRYV 368 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 + + D++ + + ++ R +R+ KV Sbjct: 369 L-----------------ENDLLEAIIGLPTDMFYNTGISTYIWIVTNRKPKHRKGKVQ- 410 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 ++A W+K+ S ++ + +I K+ K Sbjct: 411 --------------LIDASCMWQKMRKSLGSKRKELSSEHIDEITRLF---GNAKKVTKG 453 Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGEWIPDTNLTEYENVPYLES 598 + K + +D + V G+ DT L + E+VP E Sbjct: 454 GTPISRIFKTTDFGYQTITVERPERDEDGNIVKETKGKRKGQPKIDTKLRDTEDVPLNED 513 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 + +YF REV PHVPDA+ID ++GYEI FNR FY ++P R L +IDAELK Sbjct: 514 VDEYFQREVLPHVPDAWIDHDK--------TKIGYEIPFNRHFYVFKPPRTLDEIDAELK 565 Query: 659 GVEAQIATLLEEMA 672 GV I ++ E++ Sbjct: 566 GVTDNIVAMIGELS 579 >gi|150005917|ref|YP_001300661.1| type I restriction-modification system M subunit [Bacteroides vulgatus ATCC 8482] gi|149934341|gb|ABR41039.1| type I restriction-modification system M subunit [Bacteroides vulgatus ATCC 8482] Length = 771 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 200/794 (25%), Positives = 357/794 (44%), Gaps = 155/794 (19%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 L IW A+D L F + VILP +LRRL+ LEPT+ AV ++Y A Sbjct: 1 MEQLIALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKVAVEQEYKSQIEAG 60 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116 N+D E+ +G ++YN S+++L+ L + ++ N N Y+ +S+N K + + Sbjct: 61 LADNLDEEALKDESGQTYYNLSKWTLNRLKNQSSDNNDINYTNFIEYLNGYSENVKDVLK 120 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLI 163 +F+F + + +L L I + + L+ + M ++E L+ Sbjct: 121 NFEFYAKVKKLADNDRLISIIERITDPRLNLTDRPATDPDGLPLPAVSNLQMGTLFEELL 180 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 RRF E +E A + TPRDV+ L ++ +P I +LYDP CG+GG LT+ Sbjct: 181 RRFNEENNEEAGEHFTPRDVIELLAKMVFEPVKDNL----PKIISLYDPACGSGGMLTEG 236 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +++ + G + +G E+ PET+A+C + +I+ ++ + + +G+T++ Sbjct: 237 RDYLLNMGVTPNA---IQMYGTEVNPETYAICKSDFIIKGVDP-------EGMHRGNTIT 286 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PK 330 ++ F K+F Y L+NPP+GK W++DK + + K+ RF L P+ Sbjct: 287 ENHFHNKQFGYMLTNPPYGKSWKEDKKKIYHD-KDLLDARFNLKLTNFIGEEEIVDSTPR 345 Query: 331 ISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR-WLLENDLI 387 SDG +LF++ +K++ G R A + + S LF G AGSGES IRR +L+EN+L+ Sbjct: 346 TSDGQLLFILEEVDKMKSLEAQPQGSRVASIHNGSSLFTGDAGSGESNIRRYYLIENNLV 405 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446 +AIV LP ++F+ T I+TY+W+LSN K + KVQLI+A+ + +R N G + + Sbjct: 406 DAIVQLPNNIFYNTGISTYVWLLSNHKQDH---KVQLIDASKAFDKLRKNLGSRNCEVTP 462 Query: 447 DQRRQILDIYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 I+ IY++R + S++ D F Y +++ RPLR+ L Sbjct: 463 KDADDIVRIYMNRTECEANDDVRISSKIFDGDDFRYYSVQIERPLRLRCRFSAVKCDELL 522 Query: 500 ADITWRKLSPL----------------------------------------------HQS 513 D + +LS + Sbjct: 523 FDSSMMELSKWLYQTYGDKVYSGLEAEVTDIKEYLNENELKLTDKKFTTLVSAKKWQERR 582 Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573 +M ++ + + + ++ K L +K + + + + +DP A P Sbjct: 583 ALQQAAMKLMHKVGTAEYDDYNLFLALNQKAIKELGLKLTAAQLKTILRTNAVQDPTAKP 642 Query: 574 VT----DVNGE-------------------------------WIPDTNLTEYENVPYLES 598 V + + D++L + E +P E Sbjct: 643 VIAKVLKAKNKDIPAFLATYGIDESLLPDYGYYPQTDGTYVTYEADSDLRDIEKIPVKED 702 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 I +Y REV+P+V +A+I+ + ++G EI+FN++FY+ R L++ + ++ Sbjct: 703 IWEYVQREVNPYVSEAWINL--------PVTKIGCEISFNKYFYKPAQLRSLEENEHDIL 754 Query: 659 GVEAQIATLLEEMA 672 ++ Q +E + Sbjct: 755 ELDRQSQGFIEALL 768 >gi|281355059|ref|ZP_06241553.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548] gi|281317939|gb|EFB01959.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548] Length = 674 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 207/703 (29%), Positives = 327/703 (46%), Gaps = 80/703 (11%) Query: 11 LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 L NF+W A D L + + D+ K+ILPF +LRRL+ LE T+ V + G + Sbjct: 9 LFNFLWNIANDVLVQNVEKGDYKKIILPFIVLRRLDLLLEQTKETVLDFVNDEGFRELPP 68 Query: 70 E----SFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 E V GY FYNTS ++++ L T N E+Y+ +S + + I FD Sbjct: 69 ESQSEQLYVVTGYPFYNTSPFTMNLLKAETDQTRLAQNFEAYLDGYSYHVQDIIRKFDLK 128 Query: 122 STIARLEKAGLLYKICKNFSG------IELHPDTV--------PDRVMSNIYEHLIRRFG 167 ++ RL + L + F+ IE D + M ++E L+RRF Sbjct: 129 HSLERLFNSPCLGMLISKFTDENINLGIEPVLDDNGNEKYPGLDNHTMGTLFEELLRRFN 188 Query: 168 SE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + A + TPRD V L + + P K+ +YD CGTGG L+ + + Sbjct: 189 EDFSVTEAGEHYTPRDYVRLLADVAIKPVVGKIKKG---TYEIYDAACGTGGILSVSEDT 245 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR----LESDPRRDLSKNIQQGSTL 282 + GS + +GQEL+P+T+A+C A ++I L+ + GST+ Sbjct: 246 FKELGSRIETN----IYGQELQPDTYAICKAEIMISGKNKPLDYTYGGVKRECFAFGSTI 301 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGP--------GLPKISD 333 S++ GK F +C+SNPPFG W+KD + +K+ RF P LP I D Sbjct: 302 SQNGHEGKLFDFCISNPPFGTPWKKDLENWGYANKDKITDLRFRPLVGDETLDFLPDIGD 361 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 MLFL + ++++ G R + + S LF G AG G S +RR ++ENDL+EAI+A+ Sbjct: 362 PQMLFLANNLSRMKSDTALGTRIVEIHNGSSLFTGDAGQGPSNLRRHIMENDLLEAIIAM 421 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452 P ++F+ T I T++W+++NRK R+GKVQLI+AT + T +R N G K N + R I Sbjct: 422 PENMFYNTGIGTFVWVVTNRKEARRKGKVQLIDATAIKTPLRKNLGNKNCETNAEDRAAI 481 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 + + + S++ D FGY I V RPLR+ LD D++ KL + Sbjct: 482 VKLLTDFAENERSKIFDNDEFGYWSITVERPLRLKLNLDP--------DLSEAKLKESEK 533 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 D + + W ++K K + P A+ Sbjct: 534 KEIADAIAALPADAPLTDWDRCSPLLNLKKTLLKKARPY------------ITETCPEAE 581 Query: 573 PVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630 V E PD L +YE VP I + EV P+ PDAY+ D+ Sbjct: 582 VV-----EGEPDPKLRDYEQVPLKYEGGIAAFMANEVLPYAPDAYL--------DESKTE 628 Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +GYE++F ++FY+ ++ + A+++ +E + +L+ + Sbjct: 629 IGYELSFTKYFYKPVELPSIESLAADIEAIEQRTDGILKAILA 671 >gi|227547714|ref|ZP_03977763.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227080212|gb|EEI18175.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 667 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 202/686 (29%), Positives = 335/686 (48%), Gaps = 48/686 (6%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + T L IW+ A+D + +G I+PFT+LRRLE LE T+ V + Sbjct: 14 KQTAKVNRLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLESTKKDVLDLVHR 73 Query: 62 FGGSNIDLE----SFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIF 115 D + F+NTSE SL L + L+ Y+ +FS N I+ Sbjct: 74 ENVKGTDPAIVALKIESMFKLRFWNTSELSLERLATSDDALKPGLKQYLNTFSPNILEIW 133 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + F+F I L++ L+ + +F+ I++ + + D+ M +I+E+L+ R + ++ A Sbjct: 134 DAFEFDKLIDFLDRNNQLWNVVNHFASIDMSDEALQDQTMGDIFENLMYRSFARKAKDAG 193 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TPRD + L T++L DD +E G+IR++YDPT GT G L A + + + Sbjct: 194 EFYTPRDAIRLMTSILFTSDDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGIE 252 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + V GQEL+ + A+ + +L++ + + ++ G++L+ D + F Y Sbjct: 253 V----VVAGQELKESSFAMGKSDLLMQGFK------DPEVLKFGNSLTNDQYANDTFDYI 302 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--G 353 ++NPP+G W+ ++ V+ + G RF GLP +SDG MLFLMH+A+KL G Sbjct: 303 MANPPYGSSWKAFQNEVKALQEGG-DPRFSEGLPAVSDGQMLFLMHIAHKLAPASGDTKG 361 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEND----LIEAIVALPTDLFFRTNIATYLWI 409 GRAA+V + SPLF G A SG IR++L+ +++AI+ALP D+F+ T IATY+WI Sbjct: 362 GRAAVVTNGSPLFTGDAESGPDSIRKYLIGAQGGTEVLDAIIALPNDMFYNTGIATYIWI 421 Query: 410 LSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 L K RRG++Q I+AT++ +R N G+KR +D R+I IY E + S ++ Sbjct: 422 LDQNKEPRRRGRIQFIDATEICAPMRKNMGQKRVEFTEDNIREITKIYKDFEETERSIIV 481 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 YR + + + + + +A+ + + + I Sbjct: 482 TADDLTYRDVPMFKVAHYAVSVTDETVAQALSHKS--------------AFPEHEEVIRE 527 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588 + AK VK + + A +D A D G + D Sbjct: 528 MKGRDYNDLPKALKASAKAHGVKTGAPLLKHIMAALAVEDENAPASFDEKGNPVVDAASK 587 Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 E VPYLE + ++ REV P VPD + D+ + +VG E+ R FY+ + SR Sbjct: 588 VIERVPYLEDVSEHMEREVLPFVPD--------MQWDESLAKVGTELPLTRLFYKPEESR 639 Query: 649 KLQDIDAELKGVEAQIATLLEEMATE 674 L+++DA++ G +I + E+ ++ Sbjct: 640 SLEELDADIAGSLDRIYAMFGEVRSD 665 >gi|295394612|ref|ZP_06804831.1| type I restriction-modification system methyltransferase subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972505|gb|EFG48361.1| type I restriction-modification system methyltransferase subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 666 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 203/683 (29%), Positives = 338/683 (49%), Gaps = 48/683 (7%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + T SL IW+ A+D + +G I+PFT+LRRLE L PT+ AV Sbjct: 14 KQTAKVNSLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLAPTKQAVLNLVER 73 Query: 62 FGGSNIDLE----SFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIF 115 D F+NTSE SL L + + L+ Y+ +FS N I+ Sbjct: 74 ENAQGTDPAIVGLKIENKFKLRFWNTSELSLERLANSDDALKPGLKQYLNTFSPNILEIW 133 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 F+F I L++ L+ + ++F+ I++ + + D+ M +I+E+L+ R + + A Sbjct: 134 NAFEFDKLIDLLDRNNQLWNVVQHFASIDMSDEALQDQTMGDIFENLMYRSFARKGKDAG 193 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TPRD + L T++L +D +E G+IR++YDPT GT G L A + + + Sbjct: 194 EFYTPRDAIRLMTSILFTSNDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGIE 252 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + V GQEL+ + A+ + +L++ + + ++ G++L D + G F Y Sbjct: 253 V----VVAGQELKESSFAMGKSDLLMQGFK------DPEVLKFGNSLINDQYAGDTFDYI 302 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGG 353 ++NPP+G W+ + V+K + G RF GLP +SDG MLFLMH+A+KL G Sbjct: 303 MANPPYGSSWKAFQKDVKKLQEQG-DPRFSEGLPAVSDGQMLFLMHIAHKLAPADGTTKG 361 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLL----ENDLIEAIVALPTDLFFRTNIATYLWI 409 GRAA+V + SPLF G SG IR++L+ +++++AI+ALP D+F+ T+IATY+WI Sbjct: 362 GRAAVVTNGSPLFTGDPESGPDGIRKYLMGAQGGSEVLDAIIALPNDMFYNTDIATYIWI 421 Query: 410 LSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 L K RRG++QLI+AT + +R N GKKR +++D R+I +Y E + S ++ Sbjct: 422 LDQNKEPRRRGRIQLIDATGISAPMRKNMGKKRVELSEDNIREITKLYKDFEQNERSIIV 481 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 YR + + + + + + +A + + L I Sbjct: 482 TADDLTYRDVPMFKVAHYAVNVTEETVAEAMSHKS--------------ALAEHEAVIRE 527 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588 E + AK VK + + A +D A D G I D + Sbjct: 528 MKGREYNELPAALKVSAKAHGVKMGAPLLRHIVKALAVEDQNAPASLDEKGNPIVDASSK 587 Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648 E +PYL+ + ++ RE+ P VPD + D+ + +VG E+ R FY+ Q +R Sbjct: 588 VIERIPYLDDVSEHMEREILPFVPD--------MQWDESLAKVGTELPLTRLFYKPQETR 639 Query: 649 KLQDIDAELKGVEAQIATLLEEM 671 L+++DA++ +I + ++ Sbjct: 640 SLEELDADIAASLDRIYAMFRKV 662 >gi|330992547|ref|ZP_08316495.1| Putative type I restriction enzyme MjaXP M protein [Gluconacetobacter sp. SXCC-1] gi|329760746|gb|EGG77242.1| Putative type I restriction enzyme MjaXP M protein [Gluconacetobacter sp. SXCC-1] Length = 528 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 207/485 (42%), Positives = 291/485 (60%), Gaps = 17/485 (3%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ +A+ L++ IW+ A+ L GDFK ++G+VILPFT+LRRL+ L PTR V ++ Sbjct: 1 MSTTPRTAS-LSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKE 59 Query: 61 AFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 + ID KVAG F NTS+++L + N NL +YI +FS A+ IF+ Sbjct: 60 KWESKGIDPMPFMEKVAGLKFVNTSDFTLKGVLGDPDNLTQNLSAYINAFSPTARDIFDH 119 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F F+ RL KA LLY + + F +L V + M ++E LIR+F +E A + Sbjct: 120 FRFTEQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEH 179 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V+ L L+ DD+L +RT+YDPT GTGG L+ A + D ++ Sbjct: 180 FTPREVIRLMVNLIFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDARL- 238 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQEL PE++A+C A MLIR + NI+ G+TLS D +F Y LS Sbjct: 239 ---TMFGQELNPESYAICKADMLIRNQDV-------SNIRLGNTLSDDELADHKFDYMLS 288 Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPPFG +W+K + AV EH K G GRFGPGLP+ISDGSMLFL+HL +K+ +GG R Sbjct: 289 NPPFGVEWKKVEKAVRAEHEKLGYDGRFGPGLPRISDGSMLFLLHLVHKMRPVKDGGARF 348 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 IVL+ SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK Sbjct: 349 GIVLNGSPLFTGAAGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPT 408 Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 R+GKVQLI+A+ W +R G KR+ + +D + ++ + + + ++ Sbjct: 409 NRKGKVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATIIAADGTQT 468 Query: 476 RRIKV 480 R + + Sbjct: 469 REVVM 473 >gi|222444444|ref|ZP_03606959.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii DSM 2375] gi|222434009|gb|EEE41174.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii DSM 2375] Length = 541 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 197/567 (34%), Positives = 308/567 (54%), Gaps = 44/567 (7%) Query: 121 SSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 I L + +L+K+ + FS +L P V + M I+E LIRRF + +E A + Sbjct: 2 EKHINTLSEKNILFKLVRKFSETTVDLSPKAVSNHEMGTIFEELIRRFSEQSNEEAGEHF 61 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPRDVV L T LL ++ G I+ +YDP CGTGG LT ++ + Sbjct: 62 TPRDVVKLMTELLFAGEENES----GSIKLVYDPACGTGGMLTSCKEYIQNINPDI---- 113 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLS 297 +V +GQE++ E +A+C A ML++ + ++NI+ STLS D +G++F Y +S Sbjct: 114 DIVLYGQEIQDEIYAICKADMLMKG-------EKAENIKGPYSTLSNDKLSGEKFDYMIS 166 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+G+ WE D D V+ E + G GRFG GLP+ SDG +LF+ H+ +K++ R A Sbjct: 167 NPPYGRDWETDADEVKSEAEQGYNGRFGAGLPRKSDGQLLFIQHMISKMKTNDK--SRIA 224 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+ + SPLF G AGSGES IR+W+ END +EA++ALP LFF T I TY+WIL+N+KT Sbjct: 225 IITNGSPLFTGDAGSGESNIRKWIFENDYLEALIALPDQLFFNTGIGTYIWILTNKKTPN 284 Query: 418 RRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+G+VQLI+A + +R N G KR I +D +I+ Y ++ + FGY Sbjct: 285 RQGRVQLIDARKEYAGMRKNLGNKRHTIPEDSITKIIKTYNEFAESDKVKIYNNEDFGYT 344 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-------------HQSFWLDILKPMM 523 +I V R +++++ + + L L + ++KL+ + +K + Sbjct: 345 KIIVERLMQLNYQVTQERLENLYSYSAFKKLAESKSKDPKTKIADETEGKKQQEEIKEAL 404 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 I + + E+ +K +FI I D +A VTD G+ Sbjct: 405 LTIGDDLYTDWDAFEAKVKQALNQFDLKP--AFIKNIIEKLSEHDDKAGYVTDKKGKPKA 462 Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643 D+NL + E +P +++I DYF EV + PDA+ + + ++GYEINF ++FY Sbjct: 463 DSNLRDAEKIPLVQNIDDYFEEEVLKYYPDAWYEN--------KKNKIGYEINFTQYFYI 514 Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEE 670 Y+P R L++I++++ V A+I LL+E Sbjct: 515 YEPPRSLEEIESDISKVTAEIQELLKE 541 >gi|295697500|ref|YP_003590738.1| N-6 DNA methylase [Bacillus tusciae DSM 2912] gi|295413102|gb|ADG07594.1| N-6 DNA methylase [Bacillus tusciae DSM 2912] Length = 613 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 197/623 (31%), Positives = 300/623 (48%), Gaps = 82/623 (13%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 G + NFIW A+D L + + VILP T++RRL+ LEPT+ AV E + Sbjct: 2 ENGQLTWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLEMKASL 61 Query: 63 GGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116 + I + AG +FYNTS ++L L + +R + +Y+ FS N + I + Sbjct: 62 DKAGITHQDAALRMAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIID 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNIYEHL 162 +F+F + I RL KA L + + F I L P + + M I+E L Sbjct: 122 NFEFRNQIPRLAKADALGTLIEKFLDPSINLSPQPVLGSDGSVRLPGLDNHAMGTIFEEL 181 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +RRF E +E A + TPRD V L L+ +P + P LYD CGTGG LT Sbjct: 182 VRRFNEENNEEAGEHWTPRDAVRLMAHLVFEPIADRIESGPYP---LYDGACGTGGMLTV 238 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--- 279 A + + GQE+ ET+A+C A +L++ D + NI G Sbjct: 239 AEETLLQLAKERGKQVSVHLFGQEINAETYAICKADLLLKG-----EGDAADNIVGGPEH 293 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPKI 331 STLS D F G+ F + LSNPP+GK W+ D + + + + RF + + Sbjct: 294 STLSNDAFPGRTFDFMLSNPPYGKSWKSDLERMGGKA-GIKDPRFVVQHRGEELSLITRS 352 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 SDG MLFL+++ +K++ G R A V + S LF G AG GES IRRW++END +EAIV Sbjct: 353 SDGQMLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIV 412 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450 ALP ++F+ T IATY+W+L+NRK R+G+VQLI+AT + +R N GKK ++++ R Sbjct: 413 ALPLNMFYNTGIATYVWVLTNRKPGHRKGRVQLIDATQWYKPLRKNLGKKNCELSEEDIR 472 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 ++LD ++ E + S++ FGY ++ V RPLR+ +D + R+ + Sbjct: 473 RVLDTFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKG-IDPERAYTAKEIKALRETAER 531 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 + P++++I+ G A + Sbjct: 532 -----AEDAPPVIKKIHKPGTAPDPLHGLF------------------------------ 556 Query: 571 ADPVTDVN---GEWIPDTNLTEY 590 + V E+ PDT L + Sbjct: 557 -EVVIAGKPRVVEYEPDTELRDT 578 >gi|323351171|ref|ZP_08086827.1| type I restriction-modification [Streptococcus sanguinis VMC66] gi|322122395|gb|EFX94106.1| type I restriction-modification [Streptococcus sanguinis VMC66] Length = 702 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 213/703 (30%), Positives = 320/703 (45%), Gaps = 78/703 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +S N +W A L G ++ + VI+P +L RLE AL PT+ V Y Sbjct: 13 KNDVNISSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQVIAAYKKD 72 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + + ++GY +YNTS ++L L N +Y+ +S K I E+ F Sbjct: 73 KKT--PEQILEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKF 130 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + L + G L+ + K FS I+L P TV M ++E +IRRF +E A TP Sbjct: 131 KEQVHTLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTP 188 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+V+ L LLL D +++ + D GTGG L A +++ S + Sbjct: 189 REVIALMVNLLLVEADEELFVDKRIVK-ILDMAAGTGGMLATAKSYIRRLNSEVNVL--- 244 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNP 299 GQE ET+ + A MLIR+ SD TL D F K+ ++ ++NP Sbjct: 245 -LFGQEYLSETYGIGRADMLIRQENSDYFVKT-------DTLKDGDPFADKKMNFVIANP 296 Query: 300 PFGKKWEKD-----------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 PFG+ W KD E +G GRF P D +LF +H KLE Sbjct: 297 PFGQSWGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKLEK 355 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GRAAI+ + SPLF+G SGES+IRR++LENDL+EAI+ALP F+ T I Y+W Sbjct: 356 ----NGRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIW 411 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I + K +RR KVQ I+AT+ + +R G+KRR +++D RQI+ Y + E ++ Sbjct: 412 IYNKNKAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKI 471 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 D + F Y+ V++PL+ + + + ++++ KL +Q L ++P Sbjct: 472 FDNKEFLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDE 531 Query: 528 PYGWAESFVKESIKSNEAKTL-----------------------KVKASKSFIVAFINAF 564 + K + +VK + + + A A Sbjct: 532 KKLQDLAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLSEVKVTPANVNAIALAM 591 Query: 565 GRKDPRADPVTDVN----GE----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA-- 614 D A+ VT GE + D + E V E+++DYF REV PHVPDA Sbjct: 592 SEMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTENVEDYFAREVYPHVPDAHY 651 Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657 + D+ G EI F R+FYQYQ + AE Sbjct: 652 WFDEGKGY---------GAEIPFTRYFYQYQAPESADKLLAEF 685 >gi|324991450|gb|EGC23383.1| type I restriction-modification [Streptococcus sanguinis SK353] gi|332362404|gb|EGJ40204.1| type I restriction-modification [Streptococcus sanguinis SK1056] Length = 702 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 212/703 (30%), Positives = 318/703 (45%), Gaps = 78/703 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +S N +W A L G ++ + VI+P +L RLE AL PT+ V Y Sbjct: 13 KNDVNISSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQVIAAYKKD 72 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + + ++GY +YNTS ++L L N +Y+ +S K I E+ F Sbjct: 73 KKT--PEQILEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKF 130 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + L + G L+ + K FS I+L P TV M ++E +IRRF +E A TP Sbjct: 131 KEQVHTLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTP 188 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+V+ L LLL D +++ + D GTGG L A +++ S + Sbjct: 189 REVIALMVNLLLVEADEELFVDKRIVK-ILDMAAGTGGMLATAKSYIRRLNSEVNVL--- 244 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNP 299 GQE ET+ + A MLIR+ SD TL D F K+ ++ ++NP Sbjct: 245 -LFGQEYLSETYGIGRADMLIRQENSDYFVKT-------DTLKDGDPFADKKMNFVIANP 296 Query: 300 PFGKKWEKD-----------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 PFG+ W KD E +G GRF P D +LF +H KLE Sbjct: 297 PFGQSWGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKLEK 355 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GRAAI+ + SPLF+G SGES+IRR++LENDL+EAI+ALP F+ T I Y+W Sbjct: 356 ----NGRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIW 411 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I + K +RR KVQ I+AT+ + +R G+KRR +++D RQI+ Y + E ++ Sbjct: 412 IYNKNKAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKI 471 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 D + F Y+ V++PL+ + + + ++++ KL +Q L ++P Sbjct: 472 FDNKEFLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDE 531 Query: 528 PYGWAESFVKESIKSNEAKTL-----------------------KVKASKSFIVAFINAF 564 + K + +VK + + + A Sbjct: 532 KKLQDLAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLSEVKVTPANVNAIALTM 591 Query: 565 GRKDPRADPVTDVN----GE----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA-- 614 D A+ VT GE + D + E V E ++DYF REV PHVPDA Sbjct: 592 SEMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTEDVEDYFAREVYPHVPDAHY 651 Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657 + D+ G EI F R+FYQYQ + AE Sbjct: 652 WFDEEKGY---------GAEIPFTRYFYQYQAPESADKLLAEF 685 >gi|268325015|emb|CBH38603.1| putative type I restriction enzyme, M subunit [uncultured archaeon] Length = 573 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 215/575 (37%), Positives = 315/575 (54%), Gaps = 30/575 (5%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M F ANFIW+ A+D L G FK ++G+VILPF +LRRL+C LE + AV Sbjct: 1 MNNFQDK----ANFIWQVADDILRGTFKQHEYGEVILPFVVLRRLDCVLEEHKDAVIATN 56 Query: 60 LAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115 F D + G +FYNTS Y L L N N +YI +S N + + Sbjct: 57 NKFKDVLPDPAQVLLHATNGLNFYNTSYYDLRRLAQDAGNVELNFNNYINGYSANVREMI 116 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E+F +A+L K L++ + F+ I+LHPD V + M I+E L+RRF +E A Sbjct: 117 ENFQIDKIVAKLVKNDLMFMLVAKFTEIDLHPDVVANHEMGYIFEELLRRFSEMSNETAG 176 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPR+V+ L LL A + G+IRT++DP CGTGG LT A H+ Sbjct: 177 EHYTPREVIRLMVNLLFAEHQAEL-QGKGIIRTVFDPACGTGGMLTIAKEHIQQ---KIN 232 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +V +GQEL +T+A+ + +LI E+D NI+ G++ S+D F G +F+Y Sbjct: 233 PDVEIVMYGQELNEQTYAIAKSDVLIMGEEAD-------NIRPGTSFSEDKFKGNKFNYM 285 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 LSNPPFG W+K+++ ++ E N GRF GLP++SDG+++FL H+ +K+E G R Sbjct: 286 LSNPPFGVSWKKEQEFIKDEA-NDPYGRFHAGLPRVSDGALMFLQHMISKMEPR---GSR 341 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AI+ + SPLF G AGSGES IR+W++END +EAI+ALPT+LF+ T IATY+WI+SNRK Sbjct: 342 IAIIFNGSPLFTGDAGSGESNIRKWIIENDWLEAIIALPTELFYNTGIATYIWIVSNRKP 401 Query: 416 EERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 E+R GKVQLINA + +R G KR +++ Q +++ IY E G+ ++ D FG Sbjct: 402 EKRIGKVQLINAVGYYKKMRKSLGNKRNYVSEAQIQELTGIYSQFEEGENCKIFDNDYFG 461 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRK-----LSPLHQSFWLDILKPMMQQIYPY 529 Y +I V RPL + + ++ + D + R L ++ +KP + + Sbjct: 462 YNKITVERPLMEHSEMVRDKRSKPKPDTSLRDYEKVPLIEDVDEYFDREVKPHVADAWMD 521 Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 + E + K + I A I A Sbjct: 522 RSKDKVGYELNFTKYFYEYKPLRALKEIKADILAL 556 Score = 163 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 8/105 (7%) Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628 ++ V D + PDT+L +YE VP +E + +YF REV PHV DA++D+ Sbjct: 473 EHSEMVRDKRSKPKPDTSLRDYEKVPLIEDVDEYFDREVKPHVADAWMDRSKD------- 525 Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +VGYE+NF ++FY+Y+P R L++I A++ +E + LL+E+ Sbjct: 526 -KVGYELNFTKYFYEYKPLRALKEIKADILALEGETEGLLKEILG 569 >gi|158520293|ref|YP_001528163.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158509119|gb|ABW66086.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 569 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 204/523 (39%), Positives = 288/523 (55%), Gaps = 25/523 (4%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M F ANFIW+ A+D L G FK ++G VILPF + RRL+C L + + + Y Sbjct: 1 MNNFQDK----ANFIWQVADDILRGTFKQHEYGDVILPFVVFRRLDCVLNGKKDEIIDTY 56 Query: 60 LAFGGSNIDLES--FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115 F D + G FYN S Y L L N N +YI +S N + I Sbjct: 57 KKFQKKLDDPSAVVLQATGGLKFYNVSLYDLQRLTQDAGNIEANFNNYINGYSKNVREII 116 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 ++F IA+L K LL+ + F+ I+LHPD V + M I+E L+RRF +E A Sbjct: 117 DNFSIEKIIAKLAKNELLFMLVDKFTEIDLHPDKVKNHEMGYIFEELLRRFSEMSNETAG 176 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPR+V+ L LL K G++R++YDP CGTGG LT H+ H Sbjct: 177 EHYTPREVIRLMVNLLFAEQKEELK-GKGIVRSVYDPACGTGGMLTITKEHIQ---KHIN 232 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ GQEL +T+A+ + +L+ E D NI+ G++ S D F KRF++ Sbjct: 233 PKLEVILFGQELNEQTYAIAKSDVLMTGGEPD-------NIKLGTSFSNDQFRDKRFNFM 285 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 LSNPPFG W+K++ + E + GRF GLP++SDG+MLFL H+ +K+E G R Sbjct: 286 LSNPPFGVSWKKEQSFINNEAE-DPGGRFHAGLPRVSDGAMLFLQHMISKMEPT---GSR 341 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AI+ + SPLF G AGSGES IR+W++E+D +EAIVALPT+LFF T IATY+WI++NRK Sbjct: 342 IAIIHNGSPLFTGDAGSGESNIRKWIIESDWLEAIVALPTELFFNTGIATYIWIVTNRKP 401 Query: 416 EERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 RRGKVQL+NA +R G KR I +Q +QI DIY ++G+F ++ D FG Sbjct: 402 AHRRGKVQLVNAVSFAQKMRKSLGSKRNFITTEQIQQITDIYTGFKDGEFCKVFDNEDFG 461 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 + ++ V RP + K + D + R + +D Sbjct: 462 FTKVTVERPEMKKDKIVKDKNGNPKPDTSLRDYEKIPLKVDID 504 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 8/102 (7%) Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631 V D NG PDT+L +YE +P I +YF REV PHVPDA++D+ +V Sbjct: 476 KIVKDKNGNPKPDTSLRDYEKIPLKVDIDEYFKREVLPHVPDAWMDRSKD--------KV 527 Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 GYEINF ++FY+YQP R L +I A++ +E + LL E+ + Sbjct: 528 GYEINFTKYFYKYQPLRSLDEIKADILALEKETDGLLSEVLS 569 >gi|226949373|ref|YP_002804464.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto] gi|226841985|gb|ACO84651.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto] Length = 571 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 206/551 (37%), Positives = 294/551 (53%), Gaps = 33/551 (5%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + AN IW A+ L G +K ++G+VILP T++RR +C L T+ +V +K G Sbjct: 5 NNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQVGNL 64 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + K AGY FYN S++ L N YI FS+N + I E F+F + Sbjct: 65 PMKDVFLCKEAGYDFYNISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFNFDNQ 124 Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 I RL + LLY + + F +LHP + + M I+E +IRRF +E A TPR Sbjct: 125 ITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGYIFEEIIRRFSEAHNEDAGQHYTPR 184 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V+ L +L D L + + +T+YDP CGTGG L+ A +++ ++ + Sbjct: 185 EVIELMVNILFYNDSELLTGN--IAKTIYDPACGTGGMLSVAEDYLKKLNKDAEL----I 238 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 GQE+ +T+A+C A MLI+ +D NI+ G+TLS D F R+ Y LSNPPF Sbjct: 239 AFGQEINDQTYAICKADMLIKGANAD-------NIKNGNTLSDDQFKEDRYDYILSNPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G++W+ DK AVE E K G GRFG G+P + DG MLFL K++ G R AI+ + Sbjct: 292 GREWKNDKKAVETEAKLGFAGRFGAGVPAVGDGQMLFLETAIAKMKPQ---GSRIAIIHN 348 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K + R+GK Sbjct: 349 GSPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKPDYRKGK 408 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 VQLINA L+ R G KR I + +I +Y + + S++ D + FGY +I V Sbjct: 409 VQLINANGLYEKRRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVV 468 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYGWAESFVKES 539 RP + +K P+ + D P+ + I Y E Sbjct: 469 ERPKLKE-----------DGTPELKKGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAP 517 Query: 540 IKSNEAKTLKV 550 + K KV Sbjct: 518 DAWIDEKKTKV 528 >gi|311741898|ref|ZP_07715709.1| type I restriction-modification system DNA-methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314904|gb|EFQ84810.1| type I restriction-modification system DNA-methyltransferase [Aeromicrobium marinum DSM 15272] Length = 581 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 210/483 (43%), Positives = 293/483 (60%), Gaps = 19/483 (3%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 ++L NFIW A+ L G +K +G VILP T+LRRL+C +EPTR VR Sbjct: 1 MSNLGNFIWSIADQLRGVYKPHQYGNVILPMTILRRLDCIMEPTRDEVRALTAKHDNPGA 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + G F+NTS++ ++L R NL Y+ FS N +FE F F + IA Sbjct: 61 LALQVKRATGLGFHNTSQFDFASLLADPDGLRANLVDYLTKFSANI-DVFERFKFENEIA 119 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 L++ LY + + F+ ++LHPD VP+ M +++E LIR+F +E A + TPRD + Sbjct: 120 TLDEKNRLYLVVEKFAEVDLHPDVVPNAAMGDLFEELIRKFAEASNEEAGEHYTPRDAIR 179 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL + PG +R++YDPT GTGG L+ A + + S ++ +GQ Sbjct: 180 LMVDLLFAEEQEGL-LEPGTVRSIYDPTAGTGGMLSVAEERLLERNSDARL----TLYGQ 234 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL +++A+C + M+ + + S NI+ G TLS DLF G+ F +C+SNPP+G W Sbjct: 235 ELNDQSYAICKSDMIAKGQD-------SSNIRLGDTLSDDLFAGRTFDFCMSNPPYGVDW 287 Query: 306 EKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 + + +V++E ++GE GRFGPGLP +SDG MLFL HLA+K+ GGGR IVL+ SP Sbjct: 288 KAAEKSVKEERARDGEHGRFGPGLPSVSDGQMLFLTHLAHKMRPEHEGGGRVGIVLNGSP 347 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I+TY+WIL N K ERRGKVQL Sbjct: 348 LFNGAAGSGPSEIRRWLLETDLVEAIVALPTDMFFNTGISTYIWILDNTKRAERRGKVQL 407 Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSREN--GKFSRMLDYRTFGYRRIKVL 481 I+A+ + T +R G KR+ I+ R ++L +Y + + S++ D FGY I V Sbjct: 408 IDASGMGTKMRKSLGSKRKEIDTTSRERVLALYDAFDEADPDLSKVFDTTEFGYWTITVE 467 Query: 482 RPL 484 RPL Sbjct: 468 RPL 470 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 61/118 (51%), Gaps = 20/118 (16%) Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLES------------IQDYFVREVSPHVPDAY 615 D + DPVTD G PD+ + EN+P+ I+ YF EV PHVPDA+ Sbjct: 472 DDKGDPVTDRKGIRKPDSKKRDTENIPFNYGGNTTGDHGRDATIKAYFDAEVLPHVPDAW 531 Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 ID + +VGYEI F R FY Y P R L +IDA+L+ A+I LL E+ Sbjct: 532 IDH--------KKTKVGYEIPFTRHFYTYVPPRPLAEIDADLEKQVAKILELLREVEG 581 >gi|124515148|gb|EAY56659.1| putative N-6 DNA methylase [Leptospirillum rubarum] Length = 581 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 217/487 (44%), Positives = 304/487 (62%), Gaps = 19/487 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + A F+W A+ L GD+K D+GKVILPFT+LRRL+C LEPT++ V ++Y + Sbjct: 1 MGSNFSEKAAFLWSVADLLRGDYKQADYGKVILPFTVLRRLDCVLEPTKNQVLQEYESRK 60 Query: 64 GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119 S I +KV+G FY+ S ++ S L + R NLESY+ FS+NA+ +FE F Sbjct: 61 NSGIADLSPFLLKVSGQKFYSVSRFTFSKLLDDPPHIRQNLESYLGDFSENARDVFERFR 120 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F I+ L+ LL+ I + F+ I+LHPD VP+ M I+E LIRRF +E A + T Sbjct: 121 FGEQISNLDSKNLLFMIVQKFATIDLHPDQVPNEEMGLIFEELIRRFAETSNETAGEHFT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+V+ L +L DD PG++R+LYDP GTGG L+ A +++ + ++ Sbjct: 181 PREVIRLMVNILFVADDEALS-KPGVVRSLYDPAAGTGGMLSVAEDYLREHNPDMRL--- 236 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 GQEL E++++C A M+I+ + + I G++ ++D F +F Y LSNP Sbjct: 237 -TVFGQELNDESYSICKADMMIKGQDPNR-------IVSGNSFTQDGFPHDKFDYMLSNP 288 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PFG W+K +D V+ EH+ G G LP++SDGS+LFL+HL +K+ P GG R Sbjct: 289 PFGVDWKKIQDVVKNEHERKGYGGGRFGPGLPRVSDGSLLFLLHLLSKMRPPGEGGSRIG 348 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IVL+ SPLF G AGSGESEIRRW+LEND +EAI+A+PTDLF+ T IATY+WILSNRK+ E Sbjct: 349 IVLNGSPLFTGDAGSGESEIRRWILENDFLEAIIAMPTDLFYNTGIATYIWILSNRKSPE 408 Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R KVQLINA DL+ +R G KR + D+ R+I IY EN S++ D + FG+R Sbjct: 409 RTNKVQLINAVDLYAKMRKSLGNKRNYLTDENIREITRIYGEFENKGISKIFDTQDFGFR 468 Query: 477 RIKVLRP 483 +I V RP Sbjct: 469 KITVDRP 475 Score = 185 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 48/103 (46%), Positives = 70/103 (67%) Query: 570 RADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629 V G+ D +L + ENVP E I +YF REV PHVP+A+I++ D KD ++G Sbjct: 478 SGKTVKVKKGQKPYDPDLRDTENVPLKEDINEYFEREVKPHVPEAWINEEIRDAKDGKVG 537 Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +VGYEINFNR+FY Y+P R L++I A+LK VE++I +L+++ Sbjct: 538 KVGYEINFNRYFYVYKPPRPLEEIKADLKAVESRILEILKQVT 580 >gi|282849444|ref|ZP_06258829.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745] gi|282581148|gb|EFB86546.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745] Length = 574 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 214/578 (37%), Positives = 306/578 (52%), Gaps = 34/578 (5%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 A+ IW A+ L G +K ++G+VILP T+LRR +C L T+ AV + Y ++D Sbjct: 8 NEKASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKPAVLDTYNKLKDQDLD 67 Query: 69 LESF--VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 L +VAG+ FYN S+Y+ TL N +N YI FSDN + I F F + I Sbjct: 68 LLDGLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHI 127 Query: 125 ARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + +LY + K F+ LHPD + + M ++E +IRRF +E A TPR+ Sbjct: 128 TTMADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPRE 187 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L +L D+A+ + RT+YD CGTGG L+ A ++A+ S K+ Sbjct: 188 VIRLMVNILFHDDNAVLSGQ-NVARTIYDCACGTGGMLSVAEEYLANLNSTSKLIS---- 242 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQEL +T A+C A MLI+ + ++ I+ G+TLS D F+G+ F Y +SNPPFG Sbjct: 243 FGQELNDQTFAICKADMLIKGND-------AERIKSGNTLSDDQFSGEIFDYIISNPPFG 295 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 ++W+ ++ V+ E K G GRFGPGLP SDG MLFL + K+ G R AI+ + Sbjct: 296 REWKNEEAIVKNEAKLGFDGRFGPGLPSTSDGQMLFLENAIKKMNPQ---GSRIAIIHNG 352 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-GK 421 SPLF G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K R GK Sbjct: 353 SPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREGK 412 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 VQLINA DL+ R G KR I + ++I IY + S++ D FGY +I V Sbjct: 413 VQLINANDLYEKRRKSLGNKRNDIPESATQEITKIYGEFRETEISKIFDNEDFGYTKITV 472 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 RP +LD+ G L + + P+ + I Y E Sbjct: 473 ERP-----VLDENGKPVLVKGKP-----KVDTKRRDSEIVPLKEDIETYFKREVLPFAPD 522 Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578 + K K+ F F + P + + ++ Sbjct: 523 AWIDTKKNKIGYEIPFTRHFYKYVAPR-PSGEIMAEIK 559 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 9/105 (8%) Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627 D PV V G+ DT + E VP E I+ YF REV P PDA+I D + Sbjct: 478 DENGKPVL-VKGKPKVDTKRRDSEIVPLKEDIETYFKREVLPFAPDAWI--------DTK 528 Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 ++GYEI F R FY+Y R +I AE+K +E+ + L E+ Sbjct: 529 KNKIGYEIPFTRHFYKYVAPRPSGEIMAEIKALESDLDGALVEVF 573 >gi|303229050|ref|ZP_07315856.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a] gi|302516261|gb|EFL58197.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a] Length = 574 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 210/567 (37%), Positives = 297/567 (52%), Gaps = 33/567 (5%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 A+ IW A+ L G +K ++G+VILP T+LRR +C L T+SAV + Y +D Sbjct: 8 NEKASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKSAVLDTYNKLKDQKLD 67 Query: 69 --LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 +VAG+ FYN S+Y+ TL N +N YI FSDN + I F F + I Sbjct: 68 LLDGLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHI 127 Query: 125 ARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + +LY + K F+ LHPD + + M ++E +IRRF +E A TPR+ Sbjct: 128 TTMADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPRE 187 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L +L D+A+ + RT+YD CGTGG L+ A ++A+ S K+ Sbjct: 188 VIRLMVNILFHDDNAVLSGQ-NVARTIYDCACGTGGMLSVAEEYLANLNSTSKLIS---- 242 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQEL +T A+C A MLI+ + ++ I+ G+TLS D F+ + F Y +SNPPFG Sbjct: 243 FGQELNDQTFAICKADMLIKGND-------AERIKSGNTLSDDQFSAETFDYIISNPPFG 295 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 ++W+ ++ V+ E K G GRFGPGLP +DG MLFL + K+ G R AI+ + Sbjct: 296 REWKNEEAIVKNEAKLGFDGRFGPGLPSTADGQMLFLENAIKKMNPQ---GARIAIIHNG 352 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-GK 421 SPLF G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K R K Sbjct: 353 SPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREEK 412 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 VQLINA DL+ R G KR I + ++I IY + S++ D FGY +I V Sbjct: 413 VQLINANDLYEKRRKSLGNKRNDIPESAIQEITKIYGEFRETEISKIFDNEDFGYTKITV 472 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 RP +LD+ G L + P+ + I Y E Sbjct: 473 ERP-----VLDEDGKPVLVKGKP-----KADTKRRDTEIVPLKEDIETYFKREVLPFAPD 522 Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRK 567 + K K+ F F + Sbjct: 523 AWIDTKKNKIGYEIPFTRHFYKYVAPR 549 >gi|71900229|ref|ZP_00682367.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] gi|71730002|gb|EAO32095.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] Length = 819 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 190/620 (30%), Positives = 301/620 (48%), Gaps = 58/620 (9%) Query: 1 MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + + + ++FIW A+D L + + VILPFT+LRRL+ LE T+ AV Sbjct: 27 MQKTQQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 86 Query: 57 EKYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110 E+ N+ + AG +FYN SE++L+ L ++ R++ +Y+ FS + Sbjct: 87 ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 146 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156 + I F+F + I +L + +L + ++F E++ + + M Sbjct: 147 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 206 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIRRF + +E A + TPRDVV L LL P + S +LYD +CGT Sbjct: 207 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 263 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT A + H + GQE+ ET+A+C A +L++ ++NI Sbjct: 264 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 318 Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327 G STLS D F + F + +SNPP+GK W+ D D + + K RF Sbjct: 319 VGGADKSTLSADQFPSRAFDFMISNPPYGKSWKTDLDRMGGK-KKFSDPRFIVSHGGDSE 377 Query: 328 ---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + SDG ++F ++ K++ G R A+V + S LF G AG GES IRRW+LEN Sbjct: 378 FKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 437 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443 D +EAI+ALP ++F+ T IATY+W+L+N+K + RRGKVQLI+A+ + + RN GKK Sbjct: 438 DWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCE 497 Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + +ILD+Y+ + + S+ D + FGY +I + RPLR+ L + L Sbjct: 498 LGAADIARILDLYLGQTQEAAQSKWFDTQDFGYLKITIERPLRLKSQLSDERIESLRFAT 557 Query: 503 TWRKLSPLHQSFWLDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 L + + L + ++ +S +S NEA + Sbjct: 558 GEEALRAEIYATHGEALYTEFAKCKPAIEAWLKGEDENEDDDSDDSDSGDDNEAPAARKA 617 Query: 552 ASKSFIVAFINAFGRKDPRA 571 ++A + +A Sbjct: 618 VPVKRRKKLLDASTWQRDKA 637 Score = 195 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 42/209 (20%) Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 +L TW++ +++ + Q + + + + K + S Sbjct: 622 RRKKLLDASTWQR-----DKALMEVAQRAQQALGRAVFDDHNAFCAGFDAVCKAQDARLS 676 Query: 554 KSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWIPDTN 586 A A +D A PV E+ PD+ Sbjct: 677 APEKKAIYKAVSWRDDAALPVIAKRSKLNAGECFEPGFDGAYLETVGKDRFMVEYEPDSA 736 Query: 587 LTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 L + E VP E I +F REV PH PDA+I ++GYEI+F R+FY+ Sbjct: 737 LRDTEQVPLQEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARYFYKP 788 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 P R L +I A++ +E Q LL ++ + Sbjct: 789 VPLRTLAEIRADILALEQQTEGLLHKIVS 817 >gi|315446767|ref|YP_004079646.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] gi|315265070|gb|ADU01812.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] Length = 578 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 207/483 (42%), Positives = 287/483 (59%), Gaps = 20/483 (4%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + L NF+W A+ L G +K +G VILPFT+LRRL+C LEPTR VRE + G + Sbjct: 1 MSKLGNFVWGIADQLRGVYKPHQYGGVILPFTILRRLDCTLEPTREEVRELAEKYSGGAL 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 D++ + G +FYNTS + L R NL YI FS N +FE F F + +A Sbjct: 61 DVQ-VKRKTGLAFYNTSPFDFKLLLKDPEGLRANLMDYITGFSANI-DVFERFKFENELA 118 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 L++ LY + F+ ++LHP++V + M +++EHLI +F +E A + TPRD + Sbjct: 119 TLDEKNRLYLVTSQFAEVDLHPNSVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIR 178 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL D+ PG +RT+YDPT GTGG L+ A + + ++ +GQ Sbjct: 179 LMVDLLFAEDNVAL-LEPGTVRTIYDPTAGTGGMLSVAEERLLERNPGARL----RLYGQ 233 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E+ +++A+C + M+ + + NI+ G TL DLF + F +C+SNPP+G W Sbjct: 234 EINDQSYAICKSDMIAKGQDV-------GNIKLGDTLEDDLFFDRTFDFCMSNPPYGVDW 286 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + + +V+KE RF GLP I DG MLFL HLA+K+ +GGGRA IVL+ SPL Sbjct: 287 KASQKSVKKEA-LASNSRFSHGLPSIGDGQMLFLSHLASKMRPAHDGGGRAGIVLNGSPL 345 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 FNG A SG S IR+WLLE DL+EAIVALPT++FF T IATY+WIL N K ER GK+QLI Sbjct: 346 FNGAAESGPSLIRQWLLETDLLEAIVALPTNMFFNTGIATYIWILDNAKRTERAGKIQLI 405 Query: 426 NATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLR 482 +AT WT +R G K R ++ D R QIL +Y S + G +S++ FGY + V R Sbjct: 406 DATSFWTKMRKSLGSKNRELDADARDQILALYDSFDEGDPDYSKVFTANDFGYWSVTVER 465 Query: 483 PLR 485 PLR Sbjct: 466 PLR 468 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 20/117 (17%) Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDA 614 + TD G PD L + EN+P+ E+I+ YF EV PHVPDA Sbjct: 468 RTETGKVSTDRKGNPKPDAKLRDTENIPFTYGGNTAGDAARAETIEAYFEAEVLPHVPDA 527 Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 ++D +VGYEI F R FY+Y P R L +ID++L A+I LL E+ Sbjct: 528 WVDVAK--------TKVGYEIPFARHFYKYVPPRPLAEIDSDLDKQVAKILELLREV 576 >gi|71276007|ref|ZP_00652289.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Dixon] gi|71899047|ref|ZP_00681212.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] gi|71163240|gb|EAO12960.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Dixon] gi|71731160|gb|EAO33226.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] Length = 793 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 189/619 (30%), Positives = 301/619 (48%), Gaps = 59/619 (9%) Query: 1 MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + + + ++FIW A+D L + + VILPFT+LRRL+ LE T+ AV Sbjct: 1 MQKTQQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 60 Query: 57 EKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110 E+ N+ + + AG +FYN SE++L+ L ++ R++ +Y+ FS + Sbjct: 61 ERKKFLDAHNVAEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 120 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156 + I F+F + I +L + +L + ++F E++ + + M Sbjct: 121 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLNPEVNLAPLPVKDADGRIKLPALDNHGMG 180 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIRRF + +E A + TPRDVV L LL P + S +LYD +CGT Sbjct: 181 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 237 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT A + H + GQE+ ET+A+C A +L++ ++NI Sbjct: 238 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAQNI 292 Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327 G STLS D F + F + +SNPP+GK W+ D + + + K RF Sbjct: 293 VGGADKSTLSADQFHSRAFDFMISNPPYGKSWKTDLERMGGK-KGFSDPRFIVSHGGDSE 351 Query: 328 ---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + SDG ++F ++ K++ G R A+V + S LF G AG GES IRRW+LEN Sbjct: 352 FKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 411 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443 D +EAI+ALP ++F+ T IATY+W+L+N+K E RRGKVQLI+A+ + + RN GKK Sbjct: 412 DWLEAIIALPLNIFYNTGIATYIWVLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCE 471 Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + +ILD+Y+ + + S+ D + FGY +I + RPLR+ L + L Sbjct: 472 LGAADIARILDLYLGQTQEAAQSKWFDTQDFGYWKITIERPLRLKSQLSDERIESLRFAT 531 Query: 503 TWRKLSPLHQSFWLDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 L + + L + ++ ++ +S NEA + Sbjct: 532 GDEALRAELYATHGEALYTEFAKRKPAIEAWLKGEDENEDDDNEDSDSGDDNEAPAARKA 591 Query: 552 ASKSFIVAFINAFGR-KDP 569 ++A +D Sbjct: 592 VPAERRKKLLDASTWQRDK 610 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 42/213 (19%) Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + +L TW++ +++ + Q + + + + K Sbjct: 592 VPAERRKKLLDASTWQR-----DKVLMEVAQRAQQTLGRAVFDDHNAFCAGFDAVCKAQD 646 Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWI 582 + S A A +D A PV E+ Sbjct: 647 ARLSAPEKKAIYKAVSWRDDAALPVITKRSKLKAGDYFEPGFDGAYLETVGKDRFMVEYE 706 Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 PD+ L + E VP E I +F REV PH PDA+I +VGYEI+F+R+ Sbjct: 707 PDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWIATNK--------TQVGYEISFSRY 758 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 FY+ P R L +I A++ +E Q LL ++ Sbjct: 759 FYKPVPLRTLAEIRADILVLEQQTEGLLHKIVG 791 >gi|189485040|ref|YP_001955981.1| type I restriction-modification system methylase subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286999|dbj|BAG13520.1| type I restriction-modification system methylase subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 570 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 202/509 (39%), Positives = 298/509 (58%), Gaps = 22/509 (4%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S + ANFIW A+ L GDFK +++G+VILPFT+LRR +C L P + + E + Sbjct: 2 SSFSDKANFIWSVADLLRGDFKQSEYGRVILPFTVLRRFDCVLAPHKDRILEINKTLTVT 61 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 N F + GY +YN S++S L S NL YI+ FSD+ +AI ++F+ T Sbjct: 62 N-KAPVFKRCTGYDYYNISKFSFEKLRDDSNAVETNLRDYISGFSDDIRAILDNFEIGIT 120 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I RL+KA LLY I + F+ ++L ++ + M ++E LIR+F + +E A + TPR+V Sbjct: 121 IKRLKKANLLYLIVQKFAELDLDEKSIDNLTMGYMFEDLIRKFSEKSNETAGEHFTPREV 180 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L LLL+ D + G + +YDP CGTGG LT A + + K+ +P Sbjct: 181 IELMVDLLLEEDGDILNT-EGKVIKVYDPACGTGGMLTAAQKKLQEYNGKIKV----IPF 235 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQEL PET+A+C + M I+ + I G++ S+D F ++F Y LSNPPFG Sbjct: 236 GQELNPETYAICKSDMSIKG-------NSQAGIVLGNSFSEDGFKDEKFDYMLSNPPFGV 288 Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 +W+K + + E + G GRFG G P+ISDGS+LFL ++ +K+ +GG R AIV + Sbjct: 289 EWKKVQSFILDEAEKQGFNGRFGAGTPRISDGSLLFLQNMISKMIPQKDGGSRIAIVFNG 348 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 SPLF G AGSGESEIR+W++END +EA++ LP LF+ T IATY+WILSNRK++ R+GK+ Sbjct: 349 SPLFTGDAGSGESEIRKWIIENDFLEAVIGLPDQLFYNTGIATYIWILSNRKSDRRKGKI 408 Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 +L+N + +R G KR I+D R ++++Y E + D FGY++I + Sbjct: 409 RLVNGVSFFEKMRKSLGNKRNEISDKSRNALVNLYSMHEPDENYIDFDNSDFGYKKITID 468 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPL 510 RPL DK G L+ + + L Sbjct: 469 RPL-----YDKDGKPELDKKGNKKPNAEL 492 Score = 153 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 8/106 (7%) Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626 D P D G P+ L + E VP E + +YF REV P+VP A+I D+ Sbjct: 472 YDKDGKPELDKKGNKKPNAELRDIETVPLKEDVNEYFKREVLPYVPGAWI--------DE 523 Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 + GYEI F R FY++ P R Q+I E++ ++ I +E+ Sbjct: 524 SKTKTGYEIPFTRHFYKFVPLRSSQEIMKEIECLKKDIDEAFQELI 569 >gi|28199932|ref|NP_780246.1| type I restriction-modification system DNA methylase [Xylella fastidiosa Temecula1] gi|182682686|ref|YP_001830846.1| N-6 DNA methylase [Xylella fastidiosa M23] gi|28058063|gb|AAO29895.1| type I restriction-modification system DNA methylase [Xylella fastidiosa Temecula1] gi|182632796|gb|ACB93572.1| N-6 DNA methylase [Xylella fastidiosa M23] gi|307578970|gb|ADN62939.1| N-6 DNA methylase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 793 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 188/620 (30%), Positives = 300/620 (48%), Gaps = 58/620 (9%) Query: 1 MTEFTGSAASL---ANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + + + ++FIW A+ L + + VILPFT+LRRL+ LE T+ AV Sbjct: 1 MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 60 Query: 57 EKYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110 E+ N+ + AG +FYN SE++L+ L ++ R++ +Y+ FS + Sbjct: 61 ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 120 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156 + I F+F + I +L + +L + ++F E++ + + M Sbjct: 121 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 180 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIRRF + +E A + TPRDVV L LL P + S +LYD +CGT Sbjct: 181 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 237 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT A + H + GQE+ ET+A+C A +L++ ++NI Sbjct: 238 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 292 Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327 G STLS D F + F + +SNPP+GK W+ D D + + K RF Sbjct: 293 VGGADKSTLSADQFPSRAFDFMISNPPYGKSWKTDLDRMGGK-KGFSDRRFIVSHGGDPE 351 Query: 328 ---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + SDG ++F ++ K++ G R A+V + S LF G AG GES IRRW+LEN Sbjct: 352 FKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 411 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443 D +EAI+ALP ++F+ T IATY+W+L+N+K + RRGKVQLI+A+ + + RN GKK Sbjct: 412 DWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCE 471 Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + +ILD+Y+ + + S+ D + FGY ++ + RPLR+ L + L Sbjct: 472 LGAADIARILDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFAT 531 Query: 503 TWRKLSPLHQSFWLDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 L + + L + ++ +S +S NEA + Sbjct: 532 GEEALRAEIYATHGEALYTEFAKCKPAIEAWLKGEDENEDDDSDDSDSGDDNEAPAARKA 591 Query: 552 ASKSFIVAFINAFGRKDPRA 571 ++A + +A Sbjct: 592 VPVKRRKKLLDASTWQRDKA 611 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 42/209 (20%) Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 +L TW++ +++ + Q + + + K + S Sbjct: 596 RRKKLLDASTWQR-----DKALMEVAQRAQQALGRAVFDDHNAFCVGFDAVCKAQDARLS 650 Query: 554 KSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWIPDTN 586 A A +D A PV E+ PD+ Sbjct: 651 APEKKAIYKAVSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSA 710 Query: 587 LTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 L + E VP E I +F REV PH PDA+I ++GYEI+F R+FY+ Sbjct: 711 LRDTEQVPLQEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARYFYKP 762 Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673 P R L DI A++ +E Q LL ++ Sbjct: 763 VPLRTLADIRADILALEQQTEGLLHKIVG 791 >gi|111026978|ref|YP_708956.1| type I restriction-modification system methyltransferase subunit [Rhodococcus jostii RHA1] gi|110825517|gb|ABH00798.1| type I restriction-modification system methyltransferase subunit [Rhodococcus jostii RHA1] Length = 578 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 199/482 (41%), Positives = 287/482 (59%), Gaps = 20/482 (4%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + L NF+W A+ L G +K +G VILPFT+LRRL+C LEPTR VR + + Sbjct: 1 MSKLGNFVWGIADQLRGVYKPHQYGGVILPFTVLRRLDCILEPTRDEVRALATKYADGAL 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 D++ + G +FYNTS + L R NL YI FS N +FE F F + +A Sbjct: 61 DVQ-VKRKTGLAFYNTSPFDFKHLLEDPEGLRANLVDYITGFSANI-DVFERFKFENELA 118 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 L++ LY + F+ ++LHPD V + M +++EHLI +F +E A + TPRD + Sbjct: 119 TLDEKNRLYLVTSQFADVDLHPDVVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIR 178 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL D+A PG +RT+YDPT GTGG L+ A + + ++ +GQ Sbjct: 179 LMVDLLFAEDNAAL-LEPGTVRTIYDPTAGTGGMLSVAEERLLERNPDARL----RLYGQ 233 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E+ +++A+C + M+ + + NI+ G TL++D F + F +C+SNPP+G W Sbjct: 234 EINDQSYAICKSDMIAKGQDV-------GNIKLGDTLAEDQFFDRTFDFCMSNPPYGVDW 286 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + ++AV+KE + RF GLP + DG MLFL HLA+K+ +GGGRA IVL+ SPL Sbjct: 287 KASQEAVKKEA-LAQNSRFSHGLPAVGDGQMLFLSHLASKMRPKHDGGGRAGIVLNGSPL 345 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 FNG A SG S+IR+WLL++DL+EAI+ALPT++FF T IATY+WIL N K ER GKVQLI Sbjct: 346 FNGAAESGPSKIRQWLLKSDLVEAIIALPTNMFFNTGIATYIWILDNTKRPEREGKVQLI 405 Query: 426 NATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRTFGYRRIKVLR 482 +AT W+ +R G K R ++ R +IL +Y + + +S++ FGY I V + Sbjct: 406 DATPFWSKMRKSLGAKSRELDAGARDRILALYDAYDEADPAYSKIFTSDDFGYWTITVEQ 465 Query: 483 PL 484 PL Sbjct: 466 PL 467 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 20/116 (17%) Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLES------------IQDYFVREVSPHVPDAY 615 D PVTD +G PDT + EN+P+ I+ YF EV PHV DA+ Sbjct: 469 DEDGMPVTDRSGNPKPDTKKRDTENIPFTYGGNTEGEAGRTATIKAYFEAEVLPHVHDAW 528 Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 ID + R+GYEI F R FY+Y P R + +IDA+L+ A+I LL + Sbjct: 529 IDA--------KKTRIGYEIPFTRHFYKYVPPRPIAEIDADLEKQVAKIMELLRVV 576 >gi|282865355|ref|ZP_06274407.1| N-6 DNA methylase [Streptomyces sp. ACTE] gi|282559828|gb|EFB65378.1| N-6 DNA methylase [Streptomyces sp. ACTE] Length = 581 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 215/483 (44%), Positives = 297/483 (61%), Gaps = 19/483 (3%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 ++L +FIW A+ L G ++ +G V+LPFT+LRRL+C LEP ++ VRE F N Sbjct: 1 MSALGSFIWSIADQLRGPYRPNQYGTVVLPFTILRRLDCILEPDQATVRELAAKFENPNR 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 K G +FYNTS YS + L + +NL YI FS + +FE FDF I Sbjct: 61 LKVEVKKATGRTFYNTSNYSFANLLADADGLADNLADYIDRFSADV-DVFEYFDFKKEIL 119 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 LEKAGLL +I K+F I+LHPD V + M + +E++IR+F +E + D TPRD + Sbjct: 120 ALEKAGLLREIVKSFGKIDLHPDVVSNSDMGDAFEYIIRKFNEAANETSGDHYTPRDAIR 179 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL D E G+IR+LYDPT GTGG L+ A H+ K+ +GQ Sbjct: 180 LLVDLLFAEKDVDLTEG-GIIRSLYDPTAGTGGMLSLAEEHLLAENPGAKLG----LYGQ 234 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E P+++A+C + +L + + + NI G+TL+ D F G++F YC+SNPP+G W Sbjct: 235 EYNPQSYAICKSDLLAKGHD-------ATNIAFGNTLTDDAFKGRQFDYCMSNPPYGVDW 287 Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 ++ AV++E + G GRF PGLP SDG MLFL+HL +K+ P +GGGR IV++ SP Sbjct: 288 KQHAKAVKEERDSAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRVGIVMNGSP 347 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LF+G A SG S IRRWLLE+DL+EAIVALPT++FF T IATY+WIL N K +R+GKVQL Sbjct: 348 LFSGAAESGPSNIRRWLLESDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDRQGKVQL 407 Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVL 481 I+ T WT +R N G K R I+D R +++ +Y E + + S++L FGY + V Sbjct: 408 IDGTSFWTKMRKNLGAKGREISDADRAEVVRLYADYEDADPELSKVLRNDEFGYWMVTVE 467 Query: 482 RPL 484 RPL Sbjct: 468 RPL 470 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 58/115 (50%), Gaps = 20/115 (17%) Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDAYI 616 +PV G+ PD+ + ENVP+ E IQ YF EV PHVPDA+I Sbjct: 473 EGGNPVVSRKGDPKPDSKKRDTENVPFTYGGSTAGAAAEREVIQAYFDAEVKPHVPDAWI 532 Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 D + GYE+ F R FY+Y P R L +IDA+L+ A+I LL E+ Sbjct: 533 DWAK--------TKTGYEVPFTRHFYKYVPPRPLAEIDADLEKQVAKILDLLREV 579 >gi|53802448|ref|YP_112812.1| type I restriction-modification system, M subunit [Methylococcus capsulatus str. Bath] gi|53756209|gb|AAU90500.1| type I restriction-modification system, M subunit [Methylococcus capsulatus str. Bath] Length = 790 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 190/611 (31%), Positives = 294/611 (48%), Gaps = 52/611 (8%) Query: 3 EFTGSAASLANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + +++FIW A+ L + + VILPFT+LRRL+ LE T+ V E+ Sbjct: 7 QDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEETKQKVLERKRF 66 Query: 62 FGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIF 115 +N+ + + AG +FYN SE++L+ L + R + +Y+ FS N + I Sbjct: 67 LDKNNVAEQDGALRMAAGQAFYNVSEFTLAKLKASSQGQRLREDFIAYLDGFSPNVQEIL 126 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEH 161 F F I L A +L + ++F E++ + + M ++E Sbjct: 127 TKFKFRDQIQTLVDAHVLGYLIEDFLDPEINLSPLPVKDADGRIKLPALDNHGMGTVFEE 186 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LIRRF E +E A + TPRDVV L L+ P + LYD CGTGG LT Sbjct: 187 LIRRFNEENNEEAGEHFTPRDVVRLMAKLMFMPVADQIQSG---TYLLYDGACGTGGMLT 243 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-- 279 A + + + GQE+ PET+A+C A +L++ D +++I G Sbjct: 244 VAEETLRELAEEQGKEVSIHLFGQEINPETYAICKADLLLKG-----EGDEAEHIVGGAD 298 Query: 280 -STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LP 329 STLS D F + F + +SNPP+GK W+ D D + + K RF + Sbjct: 299 KSTLSNDQFRSREFDFMISNPPYGKSWKTDLDRMGGK-KGFNDPRFIVSHSGDPEFKLIT 357 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 + SDG ++FL++ K++ G R AIV + S LF G AG GES IRRW+LEND EA Sbjct: 358 RSSDGQLMFLVNKLQKMKQHSPLGSRIAIVHNGSALFTGDAGQGESNIRRWILENDWCEA 417 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQ 448 I+ALP ++F+ T IATY+W+L+NRK + R+G+VQLI+AT + + RN GKK +++ Sbjct: 418 IIALPLNIFYNTGIATYIWVLTNRKAKHRKGRVQLIDATRWFQPLRRNLGKKNCELSEAD 477 Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 ++ILD+Y+ + +N + D FGY +I V RPLR+ L + + L L Sbjct: 478 IQRILDLYLGQPQNTPECKWFDNADFGYWKITVERPLRLKSQLTRRAIETLRFASGDEAL 537 Query: 508 SPLHQSFWLD-------ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560 + + D LKP ++ E + +E K + Sbjct: 538 RAEIWAKYGDKLYAEFSKLKPEIEAWLKGDTGEDDDEPEGDEDEGAPAKKAVPEKRRKKL 597 Query: 561 INAFGR-KDPR 570 ++ +D Sbjct: 598 LDVSTWQRDKT 608 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 42/213 (19%) Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + + +L TW++ L + L Q++ + + + Sbjct: 589 VPEKRRKKLLDVSTWQRDKTLIELALLA-----QQELGDGVFDDHNDFRARFEAAMAKHG 643 Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVN---------------------------GEWI 582 K + + A A +D A PV E+ Sbjct: 644 KKLAAAEKKAIFKAVSWRDETAPPVIAKRTKLKKDEPFEPGLDGVYLEVAGKDRFLVEYE 703 Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 PD +L + E VP E I +F REV PH PDA+I + ++GYEI+F R+ Sbjct: 704 PDADLRDTEQVPLKEPGGIDAFFRREVLPHAPDAWIARDK--------TQIGYEISFARY 755 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 FY+ P R L +I A++ +E Q LL+++ Sbjct: 756 FYKPAPLRTLDEIRADILRLEQQTEGLLQKIVG 788 >gi|86738912|ref|YP_479312.1| N-6 DNA methylase [Frankia sp. CcI3] gi|86565774|gb|ABD09583.1| N-6 DNA methylase [Frankia sp. CcI3] Length = 583 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 213/483 (44%), Positives = 290/483 (60%), Gaps = 19/483 (3%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 ++L +FIW A+ L G ++ +G VILP T+LRRL+C LEP R VRE F N Sbjct: 1 MSTLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDCILEPDRETVRELARTFDNPNR 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 K G FYNTS Y S L + +NL Y+ FS + +FE FDF I Sbjct: 61 LKIEVKKATGRPFYNTSNYGFSNLLADADGLADNLADYLDRFSADV-DVFEYFDFKKEIL 119 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 LEKAGLL +I +F I+LHP V + M + +E++IR+F +E + D TPRD + Sbjct: 120 ALEKAGLLREIITSFKAIDLHPKVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIR 179 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL +A E+ G++RTLYDPT GTGG L A H+ + +GQ Sbjct: 180 LLVDLLFAEKEADLSEA-GIVRTLYDPTAGTGGMLALAEEHLLAQNPDANL----SLYGQ 234 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E P+++A+C + +L + + + NI G+TL+ D F G++F +C+SNPP+G W Sbjct: 235 EYNPQSYAICKSDLLAKGHD-------ATNIAFGNTLTDDAFKGRKFDFCMSNPPYGVDW 287 Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 ++ V +E + G GRF PGLP SDG MLFL+HLA+K+ P +GGGR I+++ SP Sbjct: 288 KQYAKKVTEERDEAGPYGRFAPGLPATSDGQMLFLLHLAHKMRAPKDGGGRVGIIMNGSP 347 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LFNG AGSG SEIRRWLLENDL+EAIVALPT++FF T IATY+WIL N K + RG VQ+ Sbjct: 348 LFNGAAGSGPSEIRRWLLENDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDARGLVQI 407 Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYRRIKVL 481 I+ T WT +R N G K R I+D R +++ +YV + +S++L FGY I V Sbjct: 408 IDGTSFWTKMRKNLGSKGREISDTDREKVVSLYVDFLDADPDYSKVLSNDEFGYWTITVE 467 Query: 482 RPL 484 RPL Sbjct: 468 RPL 470 Score = 157 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 20/118 (16%) Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLES------------IQDYFVREVSPHVPDAYI 616 PV D G+ PD + ENVP+ I YF EV PHVPDA+I Sbjct: 473 EDGKPVVDRKGQRKPDPKKRDTENVPFTYGGSTAGRAGKLDVINAYFDAEVKPHVPDAWI 532 Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 D + + GYEI F R FY+Y P R L +IDA+L A+I LL E+ + Sbjct: 533 DWAKV--------KTGYEIPFTRHFYRYVPPRPLAEIDADLDKQIAKILDLLREVEGD 582 >gi|330469018|ref|YP_004406761.1| N-6 DNA methylase [Verrucosispora maris AB-18-032] gi|328811989|gb|AEB46161.1| N-6 DNA methylase [Verrucosispora maris AB-18-032] Length = 581 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 203/483 (42%), Positives = 287/483 (59%), Gaps = 19/483 (3%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 ++L +FIW A+ L G ++ +G VILP T+LRRL+ LEP R VR + N Sbjct: 1 MSTLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDYILEPDRELVRALAAKYDNPNR 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 K G FYNTS YS + L + +NL YI FS + +F+ FDF I Sbjct: 61 LKIEVKKATGRPFYNTSNYSFANLLADADGLADNLADYIDRFSPDV-DVFQYFDFKKEIL 119 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 LEKA LL ++ +F + LHPD V + M + +E++IR+F +E + D TPRD + Sbjct: 120 ALEKAELLREVITSFKAVNLHPDVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIR 179 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL DA E+ ++R+LYDPT GTGG L A H+ K+ +GQ Sbjct: 180 LLVDLLFAERDAELTEA-DIVRSLYDPTAGTGGMLALAEEHLLAQNPGAKL----RLYGQ 234 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E P+++A+C + +L + + + NI G+TL+ F ++F +C+SNPP+G W Sbjct: 235 EYNPQSYAICKSDLLAKGHD-------TTNIAFGNTLTDPAFKDRKFDFCMSNPPYGVDW 287 Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 ++ AV KE + G GRF PGLP SDG MLFL+HL +K+ P +GGGRA IV++ SP Sbjct: 288 KQYAKAVTKERDEAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRAGIVMNGSP 347 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LFNG A SG S IR+WLLE+DL++AIVALPT++FF T IATY+WIL N K +R+G VQL Sbjct: 348 LFNGAAESGPSNIRKWLLEHDLVDAIVALPTNMFFNTGIATYIWILDNTKHPDRKGLVQL 407 Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVL 481 I+ T WT +R N G K R ++++ R +++ +Y +G +S++L FGY I V Sbjct: 408 IDGTSFWTKMRKNLGAKNRELSEENRAKVVQLYADFTDGDPDYSKVLRNDEFGYWTITVE 467 Query: 482 RPL 484 RPL Sbjct: 468 RPL 470 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 30/179 (16%) Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 + L ++ + ++Q + + + ++++E + + + Sbjct: 419 KNLGAKNRELSEENRAKVVQLYADFTDGDPDYSKVLRNDEFGYWTITVERPLL------- 471 Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVP 612 D +PV D G+ PDT + ENVP+ E IQ YF EV PHVP Sbjct: 472 ---DESGNPVVDRKGKPKPDTKKRDTENVPFTYGGSTAGAAGKIEVIQAYFDVEVKPHVP 528 Query: 613 DAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 DA+ID + + GYEI F R FY+Y P R L +IDA+L+ A+I LL E+ Sbjct: 529 DAWIDWTKV--------KTGYEIPFTRHFYKYVPPRPLAEIDADLEKQVAKILDLLREV 579 >gi|257064599|ref|YP_003144271.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] gi|256792252|gb|ACV22922.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] Length = 586 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 200/557 (35%), Positives = 294/557 (52%), Gaps = 31/557 (5%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +++FIW A+ L FK ++G +ILPFT++RRL+ LEPT+ AV E Sbjct: 2 NHSEISSFIWGTADLLRSSFKQHEYGDIILPFTVMRRLDVVLEPTKQAVLEAAAKKMPDA 61 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 + K AG FYNTSE+++ L + R NL Y+ SFS IF+ F I Sbjct: 62 LRDTMLKKAAGVDFYNTSEFTMRGLLSDADGIRENLTKYVTSFSPEIADIFDKFKIFDVI 121 Query: 125 ARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 L+ LL+ + + F I+L P ++ + M +IYE LIRRF +E A + +PRD Sbjct: 122 KDLDDNDLLFLVVERFCNPRIDLSPASISNADMGDIYEELIRRFSEVSNETAGEHFSPRD 181 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 + LA LL+ + P I + DP GTGG LT + VA+ +V Sbjct: 182 GLRLAAELLVVGEMDDLT-QPNRIVKVCDPCAGTGGALTVFADRVAEINPQA----TVVT 236 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 + QE+ +++A+C + +++ N+ G TL+ D G+ F Y +SNPP+G Sbjct: 237 YAQEINGQSYAICKSDTILKGGNI-------ANVHLGDTLADDQMPGETFGYQISNPPYG 289 Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 W+K + AV KEH+ G GRFG GLP+ISDG +LF+ H+ K+ GGGR A+ L+ Sbjct: 290 VDWKKSQAAVRKEHEQLGFAGRFGAGLPRISDGQLLFVQHMVAKMRPVDEGGGRIAVFLN 349 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF G AGSGESE+RR+LL++DL+EAIVA+P D FF T IATY+W+L N K R+GK Sbjct: 350 GSPLFTGAAGSGESEVRRYLLQHDLVEAIVAMPNDFFFNTGIATYIWVLDNTKEPRRKGK 409 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRI 478 VQLINA ++T +R G KR D+Q QI+ +Y E + K S++ FGY + Sbjct: 410 VQLINANGIYTKMRKSLGSKRNEFTDEQIAQIVGLYNDFEDADPKLSKVFANEEFGYVTV 469 Query: 479 KVLRPLRMSFILDKTGLARLEADI----TWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 V RP R + ++L+ + M + +A Sbjct: 470 DVRRPQR------DERGEIVRDKKGRPVADKELNDTENIPLTQDVDEYMAR-EVLPYAPD 522 Query: 535 FVKESIKSNEAKTLKVK 551 E K + + L++K Sbjct: 523 AWIEPRKQKKGQLLELK 539 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 32/258 (12%) Query: 424 LINATDLWTSIRNEGK---KRRIINDDQRRQILDIYVSRENGK----FSRMLDYRTFGYR 476 +N + L+T G+ +R ++ D I+ + + +LD R Sbjct: 347 FLNGSPLFTGAAGSGESEVRRYLLQHDLVEAIVAMPNDFFFNTGIATYIWVLDNTKEPRR 406 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + KV + + I K + L F + + ++ + A+ + Sbjct: 407 KGKVQL-INANGIYTKMR----------KSLGSKRNEFTDEQIAQIVGLYNDFEDADPKL 455 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596 + + E + V + +D R + V D G + D L + EN+P Sbjct: 456 SKVFANEEFGYVTVDVRRPQ----------RDERGEIVRDKKGRPVADKELNDTENIPLT 505 Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKD----KEIGRVGYEINFNRFFYQYQPSRKLQD 652 + + +Y REV P+ PDA+I+ + K+ G VG+EI F R FY+Y P R + Sbjct: 506 QDVDEYMAREVLPYAPDAWIEPRKQKKGQLLELKDGGTVGFEIPFTRHFYEYTPLRPSSE 565 Query: 653 IDAELKGVEAQIATLLEE 670 I AE++ +EA IA L + Sbjct: 566 IFAEIRELEASIAEKLRK 583 >gi|309780965|ref|ZP_07675704.1| type I restriction-modification system, M subunit [Ralstonia sp. 5_7_47FAA] gi|330824639|ref|YP_004387942.1| N-6 DNA methylase [Alicycliphilus denitrificans K601] gi|308920268|gb|EFP65926.1| type I restriction-modification system, M subunit [Ralstonia sp. 5_7_47FAA] gi|329310011|gb|AEB84426.1| N-6 DNA methylase [Alicycliphilus denitrificans K601] Length = 794 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 191/606 (31%), Positives = 293/606 (48%), Gaps = 56/606 (9%) Query: 11 LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--GSNI 67 +++FIW A+D L + + VILPFT+LRRL+ LE T+ AV E+ Sbjct: 15 ISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDTHKVAE 74 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSST 123 + AG +FYN SE++L+ L ++ R++ +Y+ FS N + I F+F + Sbjct: 75 QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEILTKFNFRNQ 134 Query: 124 IARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRFGSE 169 I +L + +L + +F E++ + + M ++E LIRRF + Sbjct: 135 IQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 194 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 +E A + TPRDVV L LL P S +LYD +CGTGG LT A + + Sbjct: 195 NNEEAGEHFTPRDVVQLMAKLLFLPVADRIDSS---TYSLYDGSCGTGGMLTVAEEALHE 251 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286 H + GQE+ ET+A+C A +L++ ++NI G STLS D Sbjct: 252 LAEEHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENIVGGADKSTLSADQ 306 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPKISDGSML 337 F + F + +SNPP+GK W+ D + + + K RF L + SDG ++ Sbjct: 307 FRSREFDFMISNPPYGKSWKTDLERMGGK-KEFNDPRFIVSHAGNAEFKLLTRSSDGQLM 365 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F ++ K++ G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++ Sbjct: 366 FQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNI 425 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456 F+ T IATY+W+L+N+K E RRGKVQLI+A+ + + RN GKK + D +ILD+Y Sbjct: 426 FYNTGIATYIWVLANKKAEARRGKVQLIDASGWFQPLRRNLGKKNCELADADIARILDLY 485 Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 + S+ D + FGY +I V RPLR+ L + L L + Sbjct: 486 LGEAQETAQSKWFDTQDFGYWKITVERPLRLKSQLSDERIEPLRFATGDEALRAEIYATH 545 Query: 516 LDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 D L + ++ +S +S +EA + ++A Sbjct: 546 GDALYTEFAKRKPAIEAWLKGEDENEDDDSEDSDSGDDSEAPAARKAVPAKRRKKLLDAT 605 Query: 565 GR-KDP 569 +D Sbjct: 606 TWQRDK 611 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 42/213 (19%) Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + +L TW++ +++ + Q + + + + K Sbjct: 593 VPAKRRKKLLDATTWQR-----DKGLMEVAQRAQQALGSAVFDDHNEFRTRFDAALKARG 647 Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWI 582 K A A +D A PV E+ Sbjct: 648 EKLGAPEKKAIYKAVSWRDEAAPPVIAKRSKLKAGEHFEPGFDGAYLETVGKDRFMVEYE 707 Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 PD+ L + E VP E I +F REV PH PDA+I ++GYEI+F R+ Sbjct: 708 PDSELRDTEQVPLKEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARY 759 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 FY+ P R L +I A++ +E Q LL ++ Sbjct: 760 FYKPAPLRTLAEIRADILALEQQSEGLLHKIVG 792 >gi|171915568|ref|ZP_02931038.1| type I restriction-modification system methyltransferase subunit [Verrucomicrobium spinosum DSM 4136] Length = 591 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 197/581 (33%), Positives = 302/581 (51%), Gaps = 31/581 (5%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID- 68 LAN +W+ A+ L G + + +V+LP T+LRR +C L T++ V ++ + Sbjct: 10 DLANLVWQIADLLRGPYTPPQYERVMLPMTVLRRFDCVLARTKAKVLAEHSRRKDGKVQG 69 Query: 69 ---LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + K AG F+N S L S N +L SYI FS N + IF+ F+F Sbjct: 70 DGLDQLLNKAAGQRFHNRSPLDFDKLKGDSDNIEKHLVSYIKGFSANVRTIFDYFEFEKE 129 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I ++ ++ LLY I FS ++L P V M I+E+LIRRF + +E A D TPR+V Sbjct: 130 IEKMRESNLLYLIVSKFSEVDLDPVRVRSEEMGLIFENLIRRFYEQANETAGDHFTPREV 189 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L LL DD L PG +R L DP CGTGG L +A N++ + + ++ + Sbjct: 190 IRLMAGLLFINDDDLLST-PGAVRKLLDPACGTGGMLAEAQNYMREHHAAAQLYT----Y 244 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQ+ A + MLI+ + + D N++ G + D F + F Y ++NPPFG Sbjct: 245 GQDYNKRAFATAASEMLIKEVAHNGSGD---NVRFGDIFTDDRFKDETFDYVIANPPFGV 301 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL----PPNGGGRAAIV 359 W+K + V +EH +G+ GRF GLP+++DGS+LF+ H+ +K E G R A+V Sbjct: 302 DWKKQQREVVREHDSGK-GRFNAGLPRVNDGSLLFVQHMISKFEPVLPHLEKHGSRMAVV 360 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 LS SPLF G AGSGESEIR+W++E+D +EAI+ALP +F+ T I TY+W+L+NRK + R+ Sbjct: 361 LSGSPLFTGGAGSGESEIRKWIIESDWLEAIIALPEQMFYNTGIGTYIWLLTNRKEKRRK 420 Query: 420 GKVQLINATDLW------TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 GK++L++A W + R+ G KRR I+ Q QIL +Y R++G+ S+ D F Sbjct: 421 GKIRLVDARSFWKPGGSEENRRSLGDKRRHISAAQIEQILKLYDHRQDGEHSKTFDNADF 480 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI----YPY 529 GY R+ V RPL+ + + + KL + + ++ P Sbjct: 481 GYTRVTVERPLQDEAGVIQK--DKHGKPKPDAKLRDFENIPLKEDINAYFKREVLPHVPD 538 Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 W + + K + +A I+A + Sbjct: 539 AWMDRSKDKVGYEINFNRHFYKFTPPRDLAEIDAEIEIAEK 579 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 8/105 (7%) Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627 D D +G+ PD L ++EN+P E I YF REV PHVPDA++D+ Sbjct: 493 DEAGVIQKDKHGKPKPDAKLRDFENIPLKEDINAYFKREVLPHVPDAWMDRSKD------ 546 Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +VGYEINFNR FY++ P R L +IDAE++ E + L +E+ Sbjct: 547 --KVGYEINFNRHFYKFTPPRDLAEIDAEIEIAEKEFMRLFKEVT 589 >gi|145642019|ref|ZP_01797591.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae R3021] gi|145273290|gb|EDK13164.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 22.4-21] Length = 658 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 188/675 (27%), Positives = 290/675 (42%), Gaps = 147/675 (21%) Query: 127 LEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLIRRFGSEVSEG 173 + +L + + F I L P + M ++E LIR+F E +E Sbjct: 1 MSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPVLTNLGMGYVFEELIRKFNEENNEE 60 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232 A + TPR+V+ L T L+ DP K I T+YDP CG+GG LT++ N + Sbjct: 61 AGEHFTPREVIELMTHLVFDP----LKSQIPAIITIYDPACGSGGMLTESQNFIEQKYPL 116 Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + G+E ET+A+C + M+I+ D +NI+ GSTL+ D F G Sbjct: 117 SESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTLATDSFQGNH 169 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPKISDGSMLF 338 F + LSNPP+GK W KD+ ++ ++ RF P+ SDG +LF Sbjct: 170 FDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDATPRSSDGQLLF 228 Query: 339 LMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LM + NK++ P N G R A V + S LF G AGSGES IRR ++ENDL+EAIV LP + Sbjct: 229 LMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLLEAIVQLPNN 288 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455 LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+ +R N G K + +I Sbjct: 289 LFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFAPEHIAEITQN 348 Query: 456 YVSR------------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 Y+ E G S++ D + FGY ++ + RP R S + L D Sbjct: 349 YLDFTAKAREIDSQNEEVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAENIEPLRFDKA 408 Query: 504 W------------------------------------------RKLSPLHQSFWLDILK- 520 K L W Sbjct: 409 LFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAAL 468 Query: 521 -----PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 +++ + + + K K+ S + A NA + A V Sbjct: 469 FQTASKLLKHFGEQQFHDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVSWYNENAAKVI 528 Query: 576 ---------------------------------DVNGE---WIPDTNLTEYENVPYLESI 599 GE + ++L + E++P ++I Sbjct: 529 AKTLKLKPNELDALCQRYQCQADGLADFGYYATGKAGEYIQYETSSDLRDSESIPLKQNI 588 Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 DYF EV PH+ +A+++ E ++GYEI+FN++FY+++P R L ++ ++ Sbjct: 589 HDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRSLAEVAQDILA 640 Query: 660 VEAQIATLLEEMATE 674 +E Q L+ E+ E Sbjct: 641 LEKQADGLISEILGE 655 >gi|38505784|ref|NP_942403.1| type I restriction-modification system M subunit [Synechocystis sp. PCC 6803] gi|38423808|dbj|BAD02017.1| type I restriction-modification system M subunit [Synechocystis sp. PCC 6803] Length = 499 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 172/538 (31%), Positives = 275/538 (51%), Gaps = 63/538 (11%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + M I+E LIRRF E ++ A + TPRDVV L L+ L + Sbjct: 11 SALDNHSMGTIFEELIRRFNEENNDEAGEHFTPRDVVKLMADLIFLSIGDLIESG---TY 67 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YD CGTGG LT A +A+ + + GQE++PET+A+ A +L++ Sbjct: 68 LVYDGACGTGGMLTVAEERLAELAQNQGKEVSIHLFGQEVQPETYAISKADLLLKG---- 123 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-- 325 ++N++ GSTLS D F + F + LSNPP+GK W+ D + + + + RF Sbjct: 124 -EGAEAENMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDLERLGGKGDI-KDPRFVTR 181 Query: 326 -------PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + + SDG ++FL++ K++ G R A V + S LF G AG GES IR Sbjct: 182 HGDEADYKMITRSSDGQLMFLVNKLAKMKHNTRLGSRIAEVHNGSSLFTGDAGQGESNIR 241 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNE 437 RW++END +E I+ALP ++F+ T IATY+W+LSNRK EERRGKVQLI+ T+ + + RN Sbjct: 242 RWIIENDWLETIIALPENIFYNTGIATYIWLLSNRKNEERRGKVQLIDGTEWYVPLRRNL 301 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 GKK ++++Q + I+D+ V+ + S++ + FGY ++ V RPLR+ D + + Sbjct: 302 GKKNCELSEEQIQTIVDLVVNPRETEKSKIFPNQAFGYWKVTVDRPLRVEG-ADPQRVYK 360 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557 ++ + + P++++I+ G Sbjct: 361 AAEIKAFKS-----EGRVTEEGVPIIKKIHKKGTRPDP---------------------- 393 Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPDAY 615 I+ + P E+ PD+NL + E +P LE I+ +F REV P+ PDA+ Sbjct: 394 ---IHGLFEVEIGGKPCV---VEYEPDSNLRDSEQIPLLEDGGIEAFFRREVLPYTPDAW 447 Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 I+ ++GYE++F R FY+ P R L +I A++ +E + LLE++ Sbjct: 448 IEA--------SKTQIGYEVSFTRHFYKPVPMRTLDEIKADIYALEQETEGLLEQIVG 497 >gi|330941785|gb|EGH44534.1| N-6 DNA methylase [Pseudomonas syringae pv. pisi str. 1704B] Length = 795 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 186/615 (30%), Positives = 303/615 (49%), Gaps = 57/615 (9%) Query: 3 EFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + +++FIW A+D L + + V+LPFT+LRRL+ LE T++AV E+ Sbjct: 7 QDQSQIKWISDFIWSIADDRLRDVYVRGKYRDVVLPFTVLRRLDAVLESTKNAVLERKKL 66 Query: 62 FGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIF 115 N+ + + A +FYN SE++L+ L ++ R++ +Y+ FS N + I Sbjct: 67 LDAHNVAEQDGALRDAAKQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEIL 126 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEH 161 F+F + I +L + +L + +F E++ + + M ++E Sbjct: 127 TKFNFRNQIQKLVDSHVLGYLIDDFLDPEINLAPLPVKDADDRIKLPALDNHGMGTVFEE 186 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LIRRF E +E A + TPRDVV L LL P + S +LYD +CGTGG LT Sbjct: 187 LIRRFNEENNEEAGEHFTPRDVVQLMAKLLFLPVAQSIESS---TYSLYDGSCGTGGMLT 243 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-- 279 A + + + H + GQE+ ET+A+C A +L++ ++NI G Sbjct: 244 VAEDALHELADQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENIVGGAD 298 Query: 280 -STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LP 329 STLS D F + F + +SNPP+GK W+ D + + + K+ RF + Sbjct: 299 KSTLSADQFRSREFDFMISNPPYGKSWKTDLERMGGK-KDFSDPRFIVSHAGEPEFKLIT 357 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 + SDG ++FL++ K++ G R A+V + S LF G AG GES IRRW+LEND +EA Sbjct: 358 RSSDGQLMFLVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEA 417 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQ 448 I++LP ++F+ T I+TY+W+L+N+K+ RRGKVQLI+A+ + RN G+K +++ Sbjct: 418 IISLPLNIFYNTGISTYIWVLANKKSAARRGKVQLIDASQWSQPLRRNLGRKNCELSEAD 477 Query: 449 RRQILDIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 IL++Y ++ S+ LD + FGY +I V RPLR+ L + L L Sbjct: 478 IACILELYLGEAQDTAHSKWLDTQDFGYWKISVERPLRLRSQLSDERIEPLRFASGDEVL 537 Query: 508 SPLHQSFWLDIL------------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555 + + L + + +S +S S+EA ++ Sbjct: 538 RAEIYATHGEALYRDFAKRKSAIEAWLKGEDENEDDEDSDGGDSGDSSEAPAVRRAVPAK 597 Query: 556 FIVAFINAFGR-KDP 569 ++A +D Sbjct: 598 RRKKLLDASTWQRDK 612 Score = 196 bits (499), Expect = 1e-47, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 42/214 (19%) Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + +L TW++ +++ + Q + + + + + K Sbjct: 594 VPAKRRKKLLDASTWQR-----DKVLMEVAQRAQQALGSVVFDDHNEFRTRFDSALKAQG 648 Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVN---------------------------GEWI 582 K A A +D A PV E+ Sbjct: 649 DKIGAPEKKAIYKAVSWRDGTAPPVITKRTKLKATDPFVGNNDGRYLLDEQNHREVVEYE 708 Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 DT+L + E VP E I +F REV PH PDA+I + E ++GYEI+F R+ Sbjct: 709 SDTDLRDSEQVPLKEQGGIDAFFAREVLPHAPDAWIAR--------EKTQIGYEISFARY 760 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 FY+ P R L +I A++ +E Q LL ++ + Sbjct: 761 FYKPTPLRTLAEIRADILALEQQSEGLLHKIVGD 794 >gi|322379477|ref|ZP_08053843.1| Putative type I restriction-modification system HsdM subunit [Helicobacter suis HS1] gi|322380458|ref|ZP_08054657.1| type I restriction enzyme M protein [Helicobacter suis HS5] gi|321147103|gb|EFX41804.1| type I restriction enzyme M protein [Helicobacter suis HS5] gi|321148084|gb|EFX42618.1| Putative type I restriction-modification system HsdM subunit [Helicobacter suis HS1] Length = 636 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 191/686 (27%), Positives = 316/686 (46%), Gaps = 88/686 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + NFIW A L +K + VILP T++RRL+ LEPT+ V KY Sbjct: 20 QFQPIINFIWDIANLLRDHYKRGKYRDVILPMTVIRRLDAILEPTKQKVLAKYKECKEKG 79 Query: 67 -----IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119 I+ +G+ FYN S+++L TL N ++N ++Y+ SFS K I + F+ Sbjct: 80 LLEKGIEAPLLCDASGFKFYNHSQFTLKTLLDDPENLKDNFKNYLNSFSATIKDILKKFN 139 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPD--------TVPDRVMSNIYEHLIRRFGSEVS 171 F + + LE+AG+L+K+ F +++ + + M ++E LIR+F E + Sbjct: 140 FETELDTLEQAGVLFKLVDKFCSNKVNFSIKSTSDKPGLSNLGMGYVFEELIRKFNEENN 199 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 E A + TPRD++ L L+ P + +YD CG+GG LT++ + + Sbjct: 200 EEAGEHFTPRDIISLMATLIFKPISEQLNS----VYFVYDNACGSGGMLTESKAFIKNLQ 255 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +I +GQE+ PET+A+C A MLI+ +NI+ GSTLS D F + Sbjct: 256 PTAEIN----LYGQEVNPETYAICKADMLIKGENP-------ENIKFGSTLSDDQFKDLK 304 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + L+NPPFGK + +++ K RF GL + DG M+FL+++ +K++ Sbjct: 305 FDFMLTNPPFGKSYGNEQE------KCKNDSRFAVGLTGVGDGQMMFLLNMISKMK-DTP 357 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G R A + + S LFN SG+ IR ++ D +EAI+ALPTDLF+ T I T++WIL+ Sbjct: 358 LGSRIASIHNGSALFNSD--SGQVAIRSHIITKDYLEAIIALPTDLFYNTQIPTFIWILN 415 Query: 412 NRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 NRK ++ KVQLI+AT + + ++ GKK + ++ + I +++ + G + +LD Sbjct: 416 NRKEAHKKQKVQLIDATSYFEPMAKSLGKKSKRLSQEHIDAIFELFSKQIKGPQAVVLDC 475 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 GY + V + ++ D + + P + Sbjct: 476 EDLGYTKFNV---------ISLKSSQEVKDDSELINKEAILKRLEQLEANPPKLEPIFKD 526 Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590 +I + + K SK + E Sbjct: 527 EKTFLNALNIPIPKKTNPEGKISKDLKILL----------------NKSE---------- 560 Query: 591 ENVPYLESIQDYFVR---EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647 E +P E YF+ ++ P I + +VGYEI FN+ FY+ + Sbjct: 561 EKIPLKEDKDTYFLELLEQIRP----------QIGFIKGQSIKVGYEILFNQHFYRPTEA 610 Query: 648 RKLQDIDAELKGVEAQIATLLEEMAT 673 + + I E++ +E +I LL+E+ Sbjct: 611 KSARTIQQEIRELEGEIQELLDEILA 636 >gi|239828720|ref|YP_002951343.1| N-6 DNA methylase [Geobacillus sp. WCH70] gi|239809013|gb|ACS26077.1| N-6 DNA methylase [Geobacillus sp. WCH70] Length = 592 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 185/573 (32%), Positives = 286/573 (49%), Gaps = 39/573 (6%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + AN IW A+ L G +K +G+VILP T+++R L PTR V E Y Sbjct: 9 QTGINIQEKANLIWSIADSLRGLYKPHQYGEVILPMTVIKRFHDTLLPTREKVLETYEKV 68 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + +GY FYN S+++ +L N N +Y+ FS+N + + ++FDF Sbjct: 69 KHLEVKEGFLQSASGYVFYNVSKFTFDSLLADPDNIEENFLAYLHGFSENVQDVLKNFDF 128 Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + RL L+ + + F+ + + PD + M I+E LI++F E A Sbjct: 129 EREVRRLADNDKLFYVIQEFNSEKAYLGPDKITSTDMGYIFEELIKKFSESYDEEAGSHF 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 T RD+++L T LL++ + + + G+ +T+YD T GT L+ + ++ Sbjct: 189 TSRDIIYLMTDLLIEEEKDVL-MNEGIAKTVYDQTMGTSQMLSAMEERLKALDPEAEV-- 245 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 GQE+ +T+A+ A +IR D N++ G+TL++D F G F YC+SN Sbjct: 246 --TVFGQEINEQTYAIAKADTMIRGGNPD-------NMRLGNTLTEDQFEGYTFDYCISN 296 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG W+ + + V+ EH+ GE GRFG GLPK +DG +LFL++ +KL+ GR AI Sbjct: 297 PPFGVDWKSEYEKVKAEHEKGENGRFGVGLPKKNDGQLLFLLNGLSKLKDT----GRMAI 352 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 + + S LF+G AGSGESEIRR+++END +EAIV LP DLF+ T I TY+WIL+ K + R Sbjct: 353 IHNGSALFSGDAGSGESEIRRYVIENDWLEAIVQLPADLFYNTGITTYIWILTKNKPKHR 412 Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRMLD 469 GKVQLI+A++++ R N G KR I + R I+ Y N ++ S++ D Sbjct: 413 IGKVQLIDASNMYEKRRKNIGNKRVDITEPCREMIVKAYREFLNKEYRMGERTVESKIFD 472 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 FGY ++ V P D+ G ++ P+ + I Y Sbjct: 473 NEDFGYYKVTVETP-----QYDEDGNIVMKNGKPVPDKDKRDTEEI-----PLKEDIQEY 522 Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 E + K+ F F Sbjct: 523 FEREIKPFNPDAWIDENKTKIGYEIPFTRLFYK 555 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 9/108 (8%) Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626 D + V NG+ +PD + + E +P E IQ+YF RE+ P PDA+ID+ Sbjct: 488 YDEDGNIVM-KNGKPVPDKDKRDTEEIPLKEDIQEYFEREIKPFNPDAWIDENK------ 540 Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 ++GYEI F R FY++QP K +DI ++ +E +I E ++ E Sbjct: 541 --TKIGYEIPFTRLFYKFQPPEKSEDIAVRIRKLEEEIVKSFESLSGE 586 >gi|124485663|ref|YP_001030279.1| hypothetical protein Mlab_0841 [Methanocorpusculum labreanum Z] gi|124363204|gb|ABN07012.1| N-6 DNA methylase [Methanocorpusculum labreanum Z] Length = 608 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 172/514 (33%), Positives = 273/514 (53%), Gaps = 40/514 (7%) Query: 1 MTEF-TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + + +A+FIW A+D L + + VILP T++RR++ LEPT+ V + Sbjct: 1 MNQIHAAQVSKIASFIWNIADDCLRDVYSRGKYRDVILPMTVIRRIDAVLEPTKEKVIAQ 60 Query: 59 YLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAK 112 +NI ++ +G +FYN+S + L L + + +Y+ +S N + Sbjct: 61 KKMLDKANIKAQSDALCLASGQAFYNSSPFCLKDLTSRAKPQQLKADFIAYLDGYSPNIQ 120 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNI 158 I F F + I + +AG+L + + F E++ + +M + Sbjct: 121 EILNKFKFRNQIDTMIEAGILGAVIEKFVSSEINLSMNDILDKQGGVRMPGLDNHMMGTL 180 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E L+R+F E +E A + TPRDVV L L+ P ++ LYD CGTGG Sbjct: 181 FEELLRKFNEENNEEAGEHFTPRDVVELMADLVFMPIADKIEDG---TYLLYDDACGTGG 237 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 LT + + + + GQE PET+A+C + ML++ + + +++I Sbjct: 238 MLTVGEQRLNELAIKYNKKFSVHLFGQETVPETYAICKSDMLLKG-----KGEQAEHIFY 292 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPK 330 GSTLS D F G F + +SNPP+GK W+ D + + + K+ RF +P+ Sbjct: 293 GSTLSNDGFAGHEFDFMISNPPYGKSWKTDAEKMGGK-KDISDPRFVVLHKNEELSLIPR 351 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +SDG MLFL + +K++ G R A V + S LF G AGSGES RR+++ENDL+EAI Sbjct: 352 VSDGQMLFLANNVSKMKSKTKLGSRIAEVHNGSSLFTGDAGSGESNFRRYIIENDLVEAI 411 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQR 449 +ALP ++F+ T IATY+W+LSN+K+E RRGKVQLI+AT T +R N GKK ++ +Q+ Sbjct: 412 IALPENIFYNTGIATYIWVLSNKKSESRRGKVQLIDATSFKTPLRKNLGKKNCEVSFEQK 471 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 +I+ + + + +FS++ F Y I V RP Sbjct: 472 NEIVKLLIDFKENEFSKIFRNEEFLYWSITVERP 505 >gi|150399017|ref|YP_001322784.1| N-6 DNA methylase [Methanococcus vannielii SB] gi|150011720|gb|ABR54172.1| N-6 DNA methylase [Methanococcus vannielii SB] Length = 589 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 187/499 (37%), Positives = 279/499 (55%), Gaps = 35/499 (7%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + + AN IW A+ + G FK ++GKVILP T+L+RL L PT+ V E Y + Sbjct: 7 KTNVNVSEKANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKEKVLEAYKEY 66 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G ++ F +GY FYNTS ++ TL + N +++A FS+N + I ++F F Sbjct: 67 GSLEVNDGFFRDASGYPFYNTSPFTFETLLNDPDHIEENFRTFMAGFSENIQDILKNFKF 126 Query: 121 SSTIARL----EKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 I+ L + L+ + + F+ + PD + M I+E LIR+F +E A Sbjct: 127 EHIISDLVGSTAEDDKLFYVIQEFNKPNSYMGPDAISTADMGYIFEELIRKFSESYNEEA 186 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 T RD+++L T LL+ +DA YD GT LT + S Sbjct: 187 GAHFTARDIIYLMTDLLVTEEDAALTRGK---IDCYDMAMGTSQMLTCLTERILQLDSEV 243 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 ++ GQE PET A+ A M+IR +D N++ G TL+ D F G +F Y Sbjct: 244 EVN----VFGQEFNPETFAIAKADMIIRGGIAD-------NMRFGDTLTNDQFKGYKFDY 292 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 C+SNPPFG +W+ K+AVEKEHK+G+ GRFG GLPKISDG MLF ++ +KL+ G Sbjct: 293 CISNPPFGVEWKPQKNAVEKEHKSGDNGRFGVGLPKISDGQMLFTLNGISKLKDT----G 348 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R AI+ + SPLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S K Sbjct: 349 RMAIIHNGSPLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNK 408 Query: 415 TEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------S 465 ++ER+GKVQLI+A++++ R G KR +++D R I+ Y + + S Sbjct: 409 SDERKGKVQLIDASNMYEKRRKSIGNKRVDLSEDCRAAIVQAYGEFTDKFYDYGDKSVES 468 Query: 466 RMLDYRTFGYRRIKVLRPL 484 ++ + FG+ +I + PL Sbjct: 469 KVFNNEDFGFYKITIESPL 487 >gi|257440743|ref|ZP_05616498.1| type I restriction-modification system methyltransferase subunit [Faecalibacterium prausnitzii A2-165] gi|257196804|gb|EEU95088.1| type I restriction-modification system methyltransferase subunit [Faecalibacterium prausnitzii A2-165] Length = 586 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 184/495 (37%), Positives = 258/495 (52%), Gaps = 35/495 (7%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + A A IW A+ L G FK ++G VILP T+++R L PT AV + Y Sbjct: 11 ANIAEKAAMIWNVADMLRGPFKPHEYGLVILPMTVVKRFHDCLLPTHQAVLDTYEKVKKL 70 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + K +GY FYNTS ++ TL N +N Y++ FS NA+ + FDF + Sbjct: 71 QVIDGFLQKASGYQFYNTSRFTFETLLADPDNIESNFRDYLSGFSANAQDVLAKFDFDNI 130 Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 I R+ ++ LY + K F + + PD + I+E L+RRF E A T R Sbjct: 131 IKRMVESNTLYLVIKEFGSGKGYLGPDKISAVDCGYIFEDLVRRFSESFGEEAGAHFTSR 190 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+++L T LLL D T+YD GT L+ + + S ++ Sbjct: 191 DIIYLMTDLLLSEADLDTSS-----MTVYDMAMGTSQMLSCMEERIHELNSDIEV----T 241 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 GQE P T A+ A M+IR + + N++ G TLS+D F G F Y +SNPPF Sbjct: 242 CFGQEFNPSTFAIAKADMMIRGGDPN-------NMRFGDTLSEDQFPGFTFQYIISNPPF 294 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G W++++ AVE E GE+GRF PGLPKISDG LF+++ KL G+ AI+ + Sbjct: 295 GIDWKREQKAVEAEAARGEMGRFAPGLPKISDGQQLFVLNGLAKLANK----GKMAIIQN 350 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SPLF+G AGSG S IR+++LEND ++ I+ L TD+F T I+TY+W+LS K R GK Sbjct: 351 GSPLFSGDAGSGPSNIRQYILENDWLDCIIQLSTDMFMNTGISTYIWVLSKDKPAHRAGK 410 Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF----------SRMLDY 470 VQLI+A+ + R G KR I D R I+ Y NGK S++ + Sbjct: 411 VQLIDASHCFEPRRKSIGTKRNDITDACRELIVTAYGEFANGKVYGDKNGIYCESKVFES 470 Query: 471 RTFGYRRIKVLRPLR 485 FGY +I V RP R Sbjct: 471 VEFGYNKIVVERPQR 485 >gi|228930125|ref|ZP_04093135.1| Type I restriction enzyme, M protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829624|gb|EEM75251.1| Type I restriction enzyme, M protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 594 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 208/575 (36%), Positives = 295/575 (51%), Gaps = 41/575 (7%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + T + AN IW A+ L G +K ++GKVILP T+++RL L PTR AV + Sbjct: 9 QTTINVQKQANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLMPTREAVLKASEQC 68 Query: 63 GGSNI--DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118 N K AGYSFYNTS Y+ TL N N +Y+ FSDN + I +F Sbjct: 69 KDMNDTMRNRMLEKAAGYSFYNTSLYTFETLLADPANIETNFRAYLNGFSDNMQDILANF 128 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F I + + L+ + + F+ E + PD V M ++E L+R+F +E A Sbjct: 129 KFDIEITNMAENDALFYVIQEFNKKESYLGPDKVTSTDMGYVFEELVRKFSESYNEEAGA 188 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 T RDV++L T LLL D +++T+YD T GT L+ + + D ++ Sbjct: 189 HFTSRDVIYLMTDLLLAEDRETLTGQ-NVVKTVYDQTMGTSQMLSAMIERIHDFNKGAEV 247 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 GQEL PET+A+ A +IR D N+ GSTLS D F G F YC+ Sbjct: 248 AT----FGQELNPETYAIAKADTMIRGGNPD-------NMALGSTLSNDQFEGYTFDYCI 296 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG W+KDK +VE+EH+ GE GRFG GLP I DG +LF ++ +KL+ GR Sbjct: 297 SNPPFGIDWKKDKKSVEEEHQKGENGRFGVGLPTIKDGQLLFQLNGLSKLKET----GRM 352 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIV + S LF+G+AG GES IR++++ ND +EAIV LPTDLF+ T I+TY+WIL+ K+ Sbjct: 353 AIVHNGSALFSGKAGGGESAIRQYVIGNDWLEAIVQLPTDLFYNTGISTYVWILTKNKSA 412 Query: 417 ERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRM 467 R+GKVQLI+A+ ++ R N G KR IN++ R I+ Y N ++ S++ Sbjct: 413 ARQGKVQLIDASKMFEKRRKNIGNKRVDINEECRNMIVQAYGEFANKEYYVDDTVVESKV 472 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 D FGY ++ V P R D+ G L+ + S P+ + + Sbjct: 473 FDNLDFGYVKVTVESPQR-----DEEGNIILKKNKPVADTSLRDTEDI-----PLKEDVQ 522 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 Y E + K K+ F F Sbjct: 523 TYFEREVLTFNPDAWMDRKKDKIGYEIPFTRLFYK 557 >gi|302037815|ref|YP_003798137.1| putative type I restriction-modification system, N-6 adenine-specific DNA methylase [Candidatus Nitrospira defluvii] gi|300605879|emb|CBK42212.1| putative Type I restriction-modification system, N-6 adenine-specific DNA methylase [Candidatus Nitrospira defluvii] Length = 658 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 201/689 (29%), Positives = 310/689 (44%), Gaps = 65/689 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAF 62 +LA+ IWK+AE L G FK ++ VILP ++RRLEC L E + VR K Sbjct: 9 KLDNLADEIWKSAERLRGKFKAYEYQNVILPIIVIRRLECVLIKWREDKTTEVRAKRPKL 68 Query: 63 GGSNI-DLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDF 118 + L +++ F N + +L + YI FS N I + F Sbjct: 69 TEKELAKLVKGLELTTAPFSNKTNLTLRKVYEEEPTLLDQTFRKYINGFSKNVDDIIDHF 128 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 ++ +TI ++ K L I + + L P + M +YE L+RRF + E A + Sbjct: 129 NYRNTIGQMVKNNRLAPILNQYKELPLGPAQLSPLEMGYVYEELLRRFSEQSGEEAGEHF 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHH 234 TPR+++ L LL P +P ++YDP CGTGG L+ A H+ D Sbjct: 189 TPREIIRLMVELLEIP-------TPERHISIYDPACGTGGMLSVAKEHLLDRAATEQQRA 241 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI-------QQGSTLSKDLF 287 + + HGQEL P +A+C A +LI+ + I + G L + F Sbjct: 242 NVEQFVTVHGQELSPTNYAICQADLLIKNDRQAKVHLGNSLIPHDPRSKEPGDQLPESTF 301 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 RF + LSNPPFG W KD E E + + R+ G+P+++DG++LFL + K++ Sbjct: 302 ---RFDFMLSNPPFGVTW-GGKDGYETEARKLQGTRYKAGMPRVNDGALLFLQTMLAKMK 357 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 P G R AI+ + SPL NG GSGESEIRRW+LEND ++ IV LP LF+ T I TY+ Sbjct: 358 EPEKGASRLAIIFNGSPLSNGDCGSGESEIRRWILENDWLDCIVMLPDQLFYNTGIFTYI 417 Query: 408 WILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVS-RENG--- 462 W+L N K + KV LI+A + ++ G KR I D R I Y ++G Sbjct: 418 WLLRNDKPASHKDKVMLIDARQQYEKEPKSFGNKRNRITDAHRLWIESRYHDGWKDGFAD 477 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + ++ F Y ++ V + + D + + P +SF +K Sbjct: 478 EHVKLFHREDFAYHKVSV-----VFWQSDDQDQPAIVTE-------PYEKSFTAANIKKE 525 Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582 + +KE K A + A P V EW Sbjct: 526 QEFYDSELIFRVRIKEGRKEQIATLSLGPKDNA--TKVFKALMTNGPEILTV-----EWT 578 Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642 + + E +P+ E+I+ + RE I + I +D ++GYEI N++FY Sbjct: 579 HRHYVKDDEYIPHGENIEAFLKRE---------IARPIILWEDSP--QLGYEILPNKYFY 627 Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671 +Y P +++ AE +E + +L+ + Sbjct: 628 KYMPPTPAKELLAEFWRLEKEAEKMLKGL 656 >gi|15597931|ref|NP_251425.1| restriction-modification system protein [Pseudomonas aeruginosa PAO1] gi|9948812|gb|AAG06123.1|AE004701_6 probable restriction-modification system protein [Pseudomonas aeruginosa PAO1] Length = 792 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 190/618 (30%), Positives = 304/618 (49%), Gaps = 58/618 (9%) Query: 1 MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + + + A+FIW A+D L + + VILPFT+LRR++ LEPT+ AV Sbjct: 1 MQKRQQDQSQIKWVADFIWNIADDRLRDVYVRGKYRDVILPFTVLRRIDAVLEPTKQAVL 60 Query: 57 EKYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110 E+ + + + AG +FYN SE++L+ L ++ R + +Y+ FS N Sbjct: 61 ERKKLLDSAKVANQNGALQAAAGQAFYNVSEFTLAKLKASAAGQRLREDFIAYLDGFSPN 120 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156 + + F+F + I +L A +L + ++F E++ + + M Sbjct: 121 VQEVLTKFNFRNQIQKLVDAHILGYLIEDFLDPEVNLSPLPVKDADGRTKLPALDNHGMG 180 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIRRF E +E A + TPRDVV L LL P + S +LYD +CGT Sbjct: 181 TVFEELIRRFNEENNEEAGEHFTPRDVVQLMAKLLFLPVADRIESS---TYSLYDGSCGT 237 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT A + + H + GQE+ ET+A+C A +L++ ++NI Sbjct: 238 GGMLTVAEEALKELAEQHGKDVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 292 Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--------- 324 G STLS D F + F + +SNPP+GK W+ D + + + K RF Sbjct: 293 VGGADKSTLSADQFRSREFDFMISNPPYGKSWKTDLERMGGK-KEFSDPRFIVNHGGDAE 351 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + + SDG ++F ++ +K++ G R A+V + S LF G AG GES IRRW+LEN Sbjct: 352 FKLITRSSDGQLMFQVNKLSKMKHDTALGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 411 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443 D +EAI+ALP ++F+ T IATY+W+L+N+K E R+G+VQLI+A+ + + RN GKK Sbjct: 412 DWLEAIIALPLNIFYNTGIATYIWVLANKKAEHRKGRVQLIDASQWFAPLRRNLGKKNCE 471 Query: 444 INDDQRRQILDIYVSREN-----GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 + + R+ILD+Y+ S+ D + FGY +I V RPLR+ L + + L Sbjct: 472 LAEGDIRRILDLYLGEAQETDSSTDQSKWFDTQDFGYWKITVERPLRLKSQLKTSAIDTL 531 Query: 499 EADITWRKLSPLHQSFWLDIL----KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 +L + D L + +I + S + + + + K + Sbjct: 532 RFASGDEELRTEIYAEHGDKLYTSFAKLKPEIEAWLKGGSEDDDDAEDGDEEGTHAKKAV 591 Query: 555 SFI--VAFINAFGR-KDP 569 ++A +D Sbjct: 592 PEKRRKRLLDATTWQRDK 609 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 42/213 (19%) Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + + RL TW++ LD+ + + + + V + K Sbjct: 591 VPEKRRKRLLDATTWQR-----DKGLLDLALLAQKVLGDAVFDDHNVFRAEFDIAMKAHD 645 Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNGE---------------------------WI 582 K + + A A +D A PV + + Sbjct: 646 KKLTAADKKAIFKAVSWRDDTAPPVVAKRHKLKASDAFIPSFDGRYFIETGKHREVVWYE 705 Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 PD +L + E VP E I +F REV PH PDA+I D E ++GYEI+F R+ Sbjct: 706 PDADLRDTEQVPLKELGGIDAFFEREVLPHAPDAWI--------DGEKTQIGYEISFARY 757 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 FY+ P R L DI A++ +E Q LL ++ Sbjct: 758 FYKPTPLRPLDDIRADILKLEQQTEGLLHKIVG 790 >gi|134045682|ref|YP_001097168.1| N-6 DNA methylase [Methanococcus maripaludis C5] gi|132663307|gb|ABO34953.1| N-6 DNA methylase [Methanococcus maripaludis C5] Length = 587 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 187/500 (37%), Positives = 268/500 (53%), Gaps = 37/500 (7%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + AN IW A+ + G FK ++GKVILP T+L+RL L PT+ AV + Sbjct: 7 QTNINVQEKANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKDAVLKTCEEI 66 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + AGY FYNTS ++ TL + N +IA FSDN + I + F F Sbjct: 67 KDFEVKEGFLESAAGYPFYNTSPFTFETLLNDPDHIEANFRKFIAGFSDNIQDIIKHFKF 126 Query: 121 SSTIARL----EKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 I+ L + L+ + + F+ + PD + M I+E LIR+F +E A Sbjct: 127 EHIISDLVGSTPEEDKLFYVIQEFNKPSSYMGPDAISTADMGYIFEELIRKFSESYNEEA 186 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 T RD+++L T LL+ D+ G +T YD GT LT + + Sbjct: 187 GAHFTARDIIYLMTDLLVTEDEFD-----GSPKTCYDMAMGTSQMLTCLTERIQQLDNKI 241 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 ++ GQE PET A+ A M+IR ++D N++ G TL D F G F Y Sbjct: 242 EV----SVFGQEFNPETFAIAKADMIIRGGKAD-------NMRFGDTLINDQFKGYTFDY 290 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 C+SNPPFG W+ K AV+KE+K E GRFG GLPKISDG MLF ++ +KL+ G Sbjct: 291 CISNPPFGVDWKAQKKAVDKENKLAEKGRFGVGLPKISDGQMLFTLNGISKLKDT----G 346 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R AI+ + SPLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S K Sbjct: 347 RLAIIHNGSPLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNK 406 Query: 415 TEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------S 465 ++ER GKVQLI+A++++ R G KR ++ D R I+ Y + + S Sbjct: 407 SDERAGKVQLIDASNMYVKRRKSIGNKRVDLSTDCREAIVKAYGEFSDKYYDYGEKSVES 466 Query: 466 RMLDYRTFGYRRIKVLRPLR 485 ++ + FGY +I V PL+ Sbjct: 467 KVFNNEDFGYYKITVESPLK 486 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 8/94 (8%) Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640 PDT+ + ENVP E I++YF REV P+ P+A+ID + +GYEI F R Sbjct: 499 PAPDTSKRDTENVPLTEDIEEYFKREVLPYNPEAWIDD--------KKTTIGYEIPFTRH 550 Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 FY+Y K + + +EA++ L+ + + Sbjct: 551 FYKYVAPEKSDMVAERICVIEAELTGSLKSLFGK 584 >gi|317132744|ref|YP_004092058.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3] gi|315470723|gb|ADU27327.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3] Length = 689 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 242/481 (50%), Gaps = 39/481 (8%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 L DP GTGG L+ + + + + ++ +GQEL +T+A+C + +I+ Sbjct: 2 KDEVLIDPAAGTGGMLSAGIEYATELNNQA----LIEVYGQELNEKTYAICKSDTMIKG- 56 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 KNI G++ ++D + FHY L NPPFG +W+K + + E++ G GRF Sbjct: 57 ------KGYKNIHLGNSFTEDALPHETFHYMLCNPPFGVEWKKYEKFIRDENERGFAGRF 110 Query: 325 GPGLPKISDGSMLFLMHLANKL-----ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 G GLP++SDGS+LFL H+ +K+ + G R AIV + SPLF G AGSGESEIRR Sbjct: 111 GAGLPRVSDGSLLFLQHMISKMMEYDEKAEGLTGCRLAIVFNGSPLFTGDAGSGESEIRR 170 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EG 438 W++EN +E I+ALP LF+ T I TY+WI++NRK R+GK+QLI+ T + +R G Sbjct: 171 WIIENGWLETIIALPDQLFYNTGILTYVWIVTNRKKGVRKGKIQLIDGTSFFERMRKPLG 230 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 +KR++I+++Q+ ++ IY G+F ++ D F Y ++ V RPLR++F + R+ Sbjct: 231 EKRKLISEEQKDELTRIYGKFVEGEFCKIFDEDDFAYWKVTVERPLRLNFQASAERIKRI 290 Query: 499 EADITWRKLSPLHQ--------------SFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544 + L+ + L + + + Sbjct: 291 REQTAFANLATSRKRKPAEHDAEVAEGKKQQEAALAAVATLDGAVLYKNRAEFSKLLHKA 350 Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604 K + + A + KD AD TD G PDT+L + E +P+ + I Y Sbjct: 351 FKKAGLDVKAPLLKAVLAGLSEKDETADICTDAKGNPEPDTDLRDTEQIPFKDDIAAYVQ 410 Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664 REV P+ PDA++ D+ + GYEI F RFF ++ +++ + +I Sbjct: 411 REVLPYAPDAWV--------DESKTKKGYEIPFARFFSSFEELGNADGTLRKIQSLGQKI 462 Query: 665 A 665 Sbjct: 463 Q 463 >gi|264677661|ref|YP_003277567.1| type I restriction-modification system subunit M [Comamonas testosteroni CNB-2] gi|262208173|gb|ACY32271.1| type I restriction-modification system, M subunit, putative [Comamonas testosteroni CNB-2] Length = 545 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 167/473 (35%), Positives = 261/473 (55%), Gaps = 49/473 (10%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 + +FIW A+D L F + VILP +LRRL+C LEP++ AV E+ Sbjct: 6 HNKIVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEEVRFQREDA 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDF 120 +++D + +GY FYNTS ++L +L + NL++Y+ FSDN K I E FD Sbjct: 66 EMADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLDGFSDNVKEIVEKFDL 125 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLIRRFG 167 + I ++ ++ +L+ + + F E++ + M ++E LIR+F Sbjct: 126 RNQIRKMAQSDVLHDVIEKFVSDEINLSPNDRKGPDGRTQPGLSNLGMGYVFEELIRKFN 185 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 E +E A + TPR+V+ L T L+ P T+YDP CG+GG LT++ + + Sbjct: 186 EENNEEAGEHFTPREVIKLMTNLVFIPVKDQL----PNPLTIYDPACGSGGMLTESQDFI 241 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 D K + +G+E+ PET+A+C + M+I+ + +NI+ GSTL+ D F Sbjct: 242 TDPEGEIKAKVGVFLYGKEVNPETYAICKSDMMIKGNDP-------ENIKFGSTLATDDF 294 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--------------PGLPKISD 333 +G RF + L+NPP+GK W+ D+ ++ E K+ RF P +P+ SD Sbjct: 295 SGTRFDFMLTNPPYGKSWKSDQKSIV-EGKDVIDHRFQVNLSDYSEEDFDFYPAIPRSSD 353 Query: 334 GSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 G +LF+M + K++ G R A V + S LF G AGSGES IRR ++END +EAI+ Sbjct: 354 GQLLFMMEMVGKMKRLGDSPMGSRIASVHNGSALFTGDAGSGESNIRRHIIENDYLEAII 413 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443 LP +LF+ T I TY+W+LSN K ++R+GKVQLI+A++L+ +R N G+K Sbjct: 414 QLPNNLFYNTGITTYVWVLSNNKADQRKGKVQLIDASNLYQKLRKNLGEKNCE 466 >gi|162448115|ref|YP_001621247.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A] gi|161986222|gb|ABX81871.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A] Length = 593 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 189/575 (32%), Positives = 288/575 (50%), Gaps = 39/575 (6%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + AN IW A L G FK ++GKVILP T+L+R + AL+ T+ V Sbjct: 10 TTTNIQEKANLIWAIANHLVGLFKPHEYGKVILPMTVLKRFDDALKETKQEVLSLNKKLN 69 Query: 64 G----SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 I K GY FYN S ++ L N +N ++Y+ FSDN K I + Sbjct: 70 EQKTIDAIKDGLICKTTGYDFYNVSPFTFENLLADPDNIASNFDTYLKGFSDNVKDIISN 129 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 F F + + K +LY + + F+ ++HPD + M I+E LIR+F E A Sbjct: 130 FKFEQVLETMHKGNVLYVVIQEFNSKKADMHPDKITSMDMGYIFEELIRKFSESYDEQAG 189 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 T RD+++L LL+ + K++ G+++T YD GT L + + K Sbjct: 190 AHFTSRDIIYLMAELLVANEKEHIKQN-GVVKTAYDMAMGTSQMLGCLDEKMKEINFDSK 248 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + GQE PET+A+ A MLI+ ++N++ G TLS D F+ F Y Sbjct: 249 L----SLFGQEFNPETYAIAKADMLIKGGN-------AQNMKFGDTLSDDQFSNYEFDYI 297 Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +SNPPFG W+ ++ V++E+ K G GRFGPGLP ISDG MLFL++ KL+ G G Sbjct: 298 ISNPPFGIDWKLEEKQVKQEYAKLGYDGRFGPGLPAISDGQMLFLLNGVKKLK---EGSG 354 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R AI+ + S LF G AGSG SEIR++L+E+DL+EAI+ LPTDLF+ T I+TY+WI+S K Sbjct: 355 RMAIIQNGSSLFTGDAGSGPSEIRKYLIESDLLEAIIQLPTDLFYNTGISTYVWIVSKNK 414 Query: 415 TEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------S 465 +ER GK+QLI+A++ + R N GKKR ++D I Y+ + K+ S Sbjct: 415 NKERLGKIQLIDASNCYVKRRKNIGKKRVDLDDTSIDLITKAYLDFKEVKYEENDLVVES 474 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 ++ D FGY ++ V P + + + S + + + + + Sbjct: 475 KIFDNDFFGYTKVTVESP------ITDENGKPILKKGKLQADSKKRDTELVPLQENIEAF 528 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560 + +S + ++ ++ F Sbjct: 529 FKDNVLPYNSSAWMDRSKDKVGYEIPFTRLFYKFI 563 >gi|303242150|ref|ZP_07328640.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2] gi|302590337|gb|EFL60095.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2] Length = 588 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 187/495 (37%), Positives = 275/495 (55%), Gaps = 29/495 (5%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + T + + +N IW NA L G +K ++GKVILP T+++R L PTR V E Y Sbjct: 9 QTTINISEKSNMIWNNANHLVGLYKPHEYGKVILPMTVIKRFHDTLLPTRDKVLETYEKV 68 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + +GYSFYNTS+++ +L + + N +Y+ FSDN I +F+F Sbjct: 69 KNFEVKEGFLESASGYSFYNTSKFTFDSLLSDAEHIEENFRTYLNGFSDNVHDILANFEF 128 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 I +L +L+ I + F+ + D + M I+E LI+ F +E A Sbjct: 129 DKEITKLANNNILFFIIQEFNKKTSYLGADLITSVDMGYIFEDLIKTFSETYNEEAGAHF 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 T RD+++L T LL+ + E+ G+++T+YD T GT L + + +I Sbjct: 189 TSRDIIYLMTDLLICDEKDSMLEN-GVVKTVYDQTMGTSQMLGCMEERLHALDADAEI-- 245 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 GQE PET+A+ A MLIR +D N++ G TLS D F+G F YC+SN Sbjct: 246 --RLFGQEFNPETYAIAKADMLIRGGNAD-------NMKFGDTLSDDKFSGYTFDYCISN 296 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG W+++++AV+ E+K G+ GRFG GLPKISDG MLF+++ +KL+ G+ AI Sbjct: 297 PPFGIDWKREEEAVKAENKLGDKGRFGAGLPKISDGQMLFMLNGVSKLKST----GKMAI 352 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 + + SPLF+G AGSGESEIRR+L+END I+AI+ L TD F+ T I TY+WI++ K R Sbjct: 353 IQNGSPLFSGDAGSGESEIRRYLIENDWIDAIIQLSTDTFYNTGITTYIWIITKNKPAHR 412 Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------SRMLD 469 GK+QLI+A+ + R G KR I D+ R I+ Y N + S+++D Sbjct: 413 EGKIQLIDASKMAEQRRKSIGNKRYDITDECRDLIVTAYGEFLNKVYTLGDKTCESKVID 472 Query: 470 YRTFGYRRIKVLRPL 484 GY +I V PL Sbjct: 473 NVDLGYHKITVETPL 487 >gi|126664067|ref|ZP_01735061.1| type I restriction-modification [Flavobacteria bacterium BAL38] gi|126624016|gb|EAZ94710.1| type I restriction-modification [Flavobacteria bacterium BAL38] Length = 578 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 188/533 (35%), Positives = 288/533 (54%), Gaps = 28/533 (5%) Query: 1 MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M FIW+ +D L FK + G V+LPF ++RRL+C L+ VR+ Y Sbjct: 1 MNNNNTKVE--VGFIWQITDDVLRDAFKKNEIGDVVLPFVVIRRLDCILDGVNENVRDTY 58 Query: 60 LAFGGS--NIDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKA 113 F L+ ++ A G FYNTS ++L +L N N +Y+ F+ + Sbjct: 59 NNFKDKVAEDKLDPILRKAAGGLKFYNTSRHTLHSLKDDARNIEINFNNYLNGFNQEVRD 118 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I E+F F +ARL K LLY++ I++H + + + M ++E LIR + +E Sbjct: 119 ILENFQFDKIVARLIKNKLLYEMIDAICKIDMHTEKIDNHGMGYVFEELIRISNEQSNET 178 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGS 232 A + TPRDV+ L +L + PG+IRT++DP CGTGG + N++ D Sbjct: 179 AGEHFTPRDVIALMNTILFVNEKQEL-AQPGIIRTIFDPACGTGGMVNLGKNYILDTLLK 237 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 K P + +GQEL +++A+ + LI E++ NI+ G++ S+D F GK F Sbjct: 238 DSKNKPTIQTYGQELNEQSYAIAKSEALITGEEAN-------NIKHGNSFSEDQFQGKHF 290 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 HY ++NPP+G W+KD+ +E E N GRF GLP+ SDG +LFL H+ +K+E Sbjct: 291 HYMMANPPYGVTWKKDQKFIENESLN-PAGRFYAGLPRTSDGQLLFLQHMLSKIE---RE 346 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G R +V + SPLF G AGSGES+IR+W++END +E IVALP D+F+ T I TY+W L+N Sbjct: 347 GSRIGVVTNGSPLFTGDAGSGESDIRKWIIENDWLECIVALPKDMFYNTGINTYIWFLTN 406 Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 +K ++R+GKVQLINA D S + G KR I + IL +Y + + S++ D Sbjct: 407 KKEKQRKGKVQLINAVDYCRSNKKSLGNKRNEITAEHITDILKLYTDFKPTQHSKIFDNE 466 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 FGY ++ V +P + D+ G L+ + + S + + + + Sbjct: 467 HFGYFQLTVEQP-----VYDEKGKKVLDKNKNPKADSKKRDKENVPLTADIEK 514 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 8/108 (7%) Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625 D + V D N D+ + ENVP I+ YF +V PHVPDA+ID Sbjct: 479 VYDEKGKKVLDKNKNPKADSKKRDKENVPLTADIEKYFETQVLPHVPDAWIDFDK----- 533 Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 R+GYEINF ++FY+Y+ R ++ E+ +E +I + L E+ + Sbjct: 534 ---TRIGYEINFTKYFYEYKGLRPATEVKTEIVSLETEITSFLNELLS 578 >gi|33240158|ref|NP_875100.1| Type I restriction-modification system methyltransferase subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237685|gb|AAP99752.1| Type I restriction-modification system methyltransferase subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 580 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 196/487 (40%), Positives = 288/487 (59%), Gaps = 22/487 (4%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 +L+ FIW AE L ++K +D+G+VIL FT+LRR++C LE + V EK + ++ Sbjct: 4 KNLSAFIWSVAELLRDNYKKSDYGQVILAFTVLRRIDCVLEAEKRGVCEKRTSHKAPSLK 63 Query: 69 LESF-VKVAGYSFYNTSEYSLST--LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 ++F + + + S L L + N+ +YI SFS K IFE F+F + I Sbjct: 64 SKAFRLNQPDVNSCSPSLLGLKEIILDEGSISKNINAYIQSFSPTIKGIFESFEFETHID 123 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 RL K LL ++ + F+ I+LHP T+ + M I+E LIR+F ++ + TPR+V++ Sbjct: 124 RLNKTNLLSQVTRKFTLIDLHPTTISNTEMGTIFEELIRKFAELSNDIQGEHFTPREVIN 183 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL D + +++++YDPT GTGG L+ A H+ K+ GQ Sbjct: 184 LMVNLLFSKDKEAL-LAEDIVKSIYDPTAGTGGMLSVAEEHIKAINPSAKLIVS----GQ 238 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E+ PE++A+C A MLIR + + NI G+TLS D K++ Y LSNPPFG W Sbjct: 239 EINPESYAICKADMLIRGQDIN-------NICLGNTLSHDHHAKKKYDYMLSNPPFGVDW 291 Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 +K + V+KE+ G GRFGPGLP++SDGS+LFLMHL +K+ GG R IVLS SP Sbjct: 292 KKVQKEVKKEYRDKGFSGRFGPGLPRVSDGSLLFLMHLISKMLPASKGGSRIGIVLSGSP 351 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 +F G AGSGESEIRR++LEND +EAI+ LP +LF+ T I+TY+WI++N+K R+GKVQL Sbjct: 352 MFTGSAGSGESEIRRYVLENDYVEAIIQLPQELFYNTAISTYIWIITNKKESSRKGKVQL 411 Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYRRI 478 I+ + +R G KR+ + D++ +I I+ S + K R+L GY+ I Sbjct: 412 IDCSTFSKKMRKSLGSKRQELRDNEISEITKIFNSFKEVKTEGKSICRILKTEELGYKLI 471 Query: 479 KVLRPLR 485 V RP + Sbjct: 472 TVDRPKK 478 >gi|49484939|ref|YP_042160.1| putative type I restriction enzyme methylase protein [Staphylococcus aureus subsp. aureus MSSA476] gi|49243382|emb|CAG41799.1| putative type I restriction enzyme methylase protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 595 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 187/575 (32%), Positives = 293/575 (50%), Gaps = 40/575 (6%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + + AN IW A+ L G +K ++GKVILP T+++RL L TR V + Sbjct: 9 QTSINVQKQANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLLKTRDKVLKTAENT 68 Query: 63 GGSNI--DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118 N +GYSFYNTS Y+ TL N +N +Y+ FS+N + I +F Sbjct: 69 QSINDVMRERLLKNASGYSFYNTSLYTFETLLADPANIESNFRAYLNGFSENMQDILNNF 128 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F I + +L+ + + F+ + + PD + M ++E L+R+F +E A Sbjct: 129 KFDVEITTMADNDVLFYVIQEFNKADAYLGPDKMTSTDMGYVFEELVRKFSESYNEEAGA 188 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 T RD+++L T LLL D + +T+YD T GT L+ + D ++ Sbjct: 189 HFTSRDIIYLMTDLLLIEDKDTLF-KEHVFKTVYDQTMGTSQMLSAMTERIHDMNDTAEV 247 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 GQEL PET+A+ A +IR + +N+ GSTL+ D F G F YC+ Sbjct: 248 AT----FGQELNPETYAISKADTMIRGGDP-------ENMALGSTLTSDRFEGFTFDYCI 296 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG W+KD+ AV+ EH+ GELGRFG GLP++SDG +LF ++ +KL+ GR Sbjct: 297 SNPPFGVDWKKDQKAVKAEHELGELGRFGVGLPRVSDGQLLFQLNGISKLKET----GRM 352 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ + S LF+G G+GES IR++++END +E I+ LP DLF+ T I+TY+WI++ K+ Sbjct: 353 AIIHNGSALFSGNPGAGESLIRQYVIENDWLEGIIQLPNDLFYNTGISTYIWIITKDKSP 412 Query: 417 ERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRM 467 ER+GKVQL++A++++ R N G+KR I++ R I+ Y + ++ S++ Sbjct: 413 ERQGKVQLVDASNMYEKRRKNIGEKRVDISEACREMIVQAYGEFNDKEYYLGDGTVESKI 472 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 L +FG+ R+ + RP R + + + + P+ + I Sbjct: 473 LKNESFGFTRVTIERPQR------DENGDIVYKKNGSKSVDTNLRDTED---IPLTEDIN 523 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 Y E + K K+ F F Sbjct: 524 EYFEREILPFNQDAWMDRKKDKIGYEIPFTRLFYK 558 >gi|310658569|ref|YP_003936290.1| n-6 DNA methylase [Clostridium sticklandii DSM 519] gi|308825347|emb|CBH21385.1| N-6 DNA methylase [Clostridium sticklandii] Length = 597 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 193/569 (33%), Positives = 299/569 (52%), Gaps = 42/569 (7%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + A+ IW A+ + G FK ++GKVILP TLL+RL L T+ V +KY Sbjct: 7 QTNINVQEKADMIWGIADIIRGTFKPHEYGKVILPMTLLKRLNDTLLETKEGVLKKYEEV 66 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + K +GYSFYN S ++ L + N +++IA FS+N I ++F F Sbjct: 67 KNFEVKDGFLTKASGYSFYNISPFTFENLLNEPEHIEENFKTFIAGFSENIHDIIKNFKF 126 Query: 121 SSTIARL----EKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +T+ L ++ L+ + + F+ + D + M I+E L+R+F +E A Sbjct: 127 ENTLNDLVGSTKEESKLFYVIQEFNKPNAYMGADIITTTDMGYIFEELVRKFSESYNEEA 186 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 T RD+++ T LL+ ++ + +E G+++T+YD GT LT + + + Sbjct: 187 GAHFTARDIIYTMTDLLIAEEENVLQED-GLVKTVYDMAMGTSQMLTSMEERLKELDADA 245 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 ++ GQE+ PET+A+ A M+IR + N++ G TLS D F F Y Sbjct: 246 EV----TVFGQEINPETYAIAKADMIIRGGN-------ASNMRFGDTLSNDRFEDYEFDY 294 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +SNPPFG W+ K AVEKEHK G GRF PGLPKISDG MLF ++ KL N G Sbjct: 295 IISNPPFGVDWKAQKSAVEKEHKKGSNGRFAPGLPKISDGQMLFTLNGIKKL----NDTG 350 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 + AI+ + SPLF G AGSG SEIRR+++ENDL+EAIV LPTDLF+ T I TY+W++S K Sbjct: 351 KMAIIHNGSPLFVGDAGSGPSEIRRYIIENDLLEAIVQLPTDLFYNTGITTYIWLISKNK 410 Query: 415 TEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------S 465 + R GKVQLI+A++++ R + G KR +++ R I++ Y EN + S Sbjct: 411 SARRTGKVQLIDASNMYIKRRTSLGNKRVELDECCREAIVNAYGDFENKHYEYDKKSVES 470 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 ++ + FGY +I V P +D+ G + + ++ + + ++ + Sbjct: 471 KIFNNEDFGYYKIVVESP-----QVDEYG----KIILKKKQSVADPSKRDTENVPMILGK 521 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASK 554 E F KE + N+ + +K Sbjct: 522 DQDEVIKEYFEKEVLPYNQDAWVDENKTK 550 >gi|225026440|ref|ZP_03715632.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353] gi|224956232|gb|EEG37441.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353] Length = 592 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 195/580 (33%), Positives = 285/580 (49%), Gaps = 46/580 (7%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T ++ A IW A+DL G +K ++G VILP T+++R L T AV + Y Sbjct: 8 TNVGKNSNDTAALIWSVADDLVGAYKPHEYGLVILPMTVIKRFHDCLLLTHQAVLDTYKK 67 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119 + K +GY FYNTS ++ TL N +N ++Y+ FSDN + I D Sbjct: 68 VEKLAVKDGFLRKSSGYQFYNTSPFTFKTLIADPENIVDNFKAYLNGFSDNVQDILARMD 127 Query: 120 FSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F S I +E+AGLLY++ +F + P+ + M I+E+L+RRF +E A Sbjct: 128 FDSQIKHMEEAGLLYQVISDFCTDKGDFSPEKISAVDMGYIFENLVRRFSESYNEEAGAH 187 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 T RD+++L + LL+ D++ F G+ +T+YD T GT LT + + + Sbjct: 188 FTSRDIIYLMSDLLVAGDESAFTGD-GISKTVYDMTMGTSQMLTCMEERLKQMDADADV- 245 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQE P T + A MLIR + + N+Q G TLS D F+G +F Y +S Sbjct: 246 ---TVFGQEFNPFTFGIAKADMLIRGGDPN-------NMQFGDTLSDDKFSGYKFDYIIS 295 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG W++++ V E K G GRF PGLP DG +LF+++ KL+ G+ A Sbjct: 296 NPPFGIPWKREEKEVTAEFKKGTAGRFAPGLPAKGDGQLLFMLNGLAKLKDD----GQMA 351 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+ + S LFNG AGSG SEIRR+L+END ++AIV LP + F+ T IATY+WI+ K Sbjct: 352 IIQNGSSLFNGDAGSGPSEIRRYLIENDWLDAIVQLPNNAFYNTGIATYIWIVMKNKPVT 411 Query: 418 RRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF------------ 464 +GKVQLI+A+ +S R N G K I R I+ Y + + + Sbjct: 412 HQGKVQLIDASACCSSRRKNIGSKNVDITKACRDLIIKAYGAYVDETYNGVDENDNAIIV 471 Query: 465 -SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PM 522 S+++D GY +I V P LD+ G +I +K P+ D P+ Sbjct: 472 KSKVMDAIDLGYNKIVVETP-----QLDEDG------NIVMKKKKPVVDKSKRDTENVPL 520 Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 + I Y E + KV F F Sbjct: 521 AEDIDAYFEREVIPYNPQAWIDKAKTKVGYEIPFTRTFYE 560 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%) Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627 D + V + + D + + ENVP E I YF REV P+ P A+I DK Sbjct: 494 DEDGNIVMKKK-KPVVDKSKRDTENVPLAEDIDAYFEREVIPYNPQAWI--------DKA 544 Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +VGYEI F R FY+YQ I A ++ E + L + Sbjct: 545 KTKVGYEIPFTRTFYEYQQIEPSDVIAARIEYYEKSLMAKLHNLFG 590 >gi|225868038|ref|YP_002743986.1| type I restriction enzyme methylase protein [Streptococcus equi subsp. zooepidemicus] gi|225701314|emb|CAW98331.1| putative type I restriction enzyme methylase protein [Streptococcus equi subsp. zooepidemicus] Length = 597 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 194/577 (33%), Positives = 292/577 (50%), Gaps = 43/577 (7%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + A+ IW A+ L G +K ++GKVILP T+++RL L PTR V E Sbjct: 13 ERMTTNIKEKASLIWSIADILRGLYKPHEYGKVILPMTVIKRLHDTLLPTRDRVLEVSKT 72 Query: 62 FGG---SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116 + I +GY FYNTS ++ ++L N + N +++ FS+N + I + Sbjct: 73 LSNIKVAQIRDRKLTDTSGYKFYNTSNFTFNSLLSDPDNIQENFYAFLNGFSENVRDILD 132 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +F+F I+++ L+ + + F+ + + DTV M I+E L+RRF E A Sbjct: 133 NFEFDEEISKMTNNDALFAVIQEFNSQKAYLGADTVTSTDMGYIFEELVRRFSESYGEDA 192 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 T RD+++L T +LL + ++RT+YD T GT L+ M + ++ Sbjct: 193 GAHFTSRDIIYLMTDILLIDEKP---SDKPIVRTIYDQTMGTSQMLSAMMERIKALDANA 249 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + GQEL PET+A+ A +IR D N+ GSTLSKD F+G F Y Sbjct: 250 DV----TTFGQELNPETYAIAKADTMIRGGNPD-------NMALGSTLSKDAFSGYTFDY 298 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +SNPPFG W+KD+ AV++E + GE GRFG GLPKISDG +LF ++ +KL+ G Sbjct: 299 LISNPPFGIDWKKDQKAVKEEAELGEKGRFGAGLPKISDGQLLFQLNGISKLKDT----G 354 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R AI+ + S LF+G AG GES IR +++ ND +EAI+ LPTDLF+ T I+TY+WI++ K Sbjct: 355 RMAIIHNGSALFSGNAGGGESAIREYVIMNDWLEAIIQLPTDLFYNTGISTYIWIITKNK 414 Query: 415 TEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------S 465 EERRGKVQL++A+ + R N G K+ I QR I+ Y N + S Sbjct: 415 VEERRGKVQLLDASRAFVKRRKNIGDKKVDIEKAQRELIVQAYGEFANQIYIEGDTAVES 474 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 ++ D FGYR++ V P+ + + R + S + P+ + Sbjct: 475 KIFDNNFFGYRKVVVETPMY----DEDGNIVRNKNGKATPDTSKRNTEDI-----PLTED 525 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 + Y E + K+ F F Sbjct: 526 VDEYITREVLPFNPDAWVDDSKTKIGYEIPFTRLFYK 562 >gi|86152066|ref|ZP_01070278.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp. jejuni 260.94] gi|85840851|gb|EAQ58101.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp. jejuni 260.94] Length = 562 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 179/609 (29%), Positives = 298/609 (48%), Gaps = 82/609 (13%) Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV---KVA 76 + L + + VILP T++RR++ LEPT+ V + Y + +LES + + Sbjct: 4 DLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGN 63 Query: 77 GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134 F+N S ++L TL N R N E+Y+ FS+N K I F F + + LE++ +L+ Sbjct: 64 KLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQLDTLEESNILF 123 Query: 135 KICKNFSGI--------------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + F + + + M ++E LIR+F E +E A + TP Sbjct: 124 GVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTP 183 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+++ L T L+ P K+ +YD CG+GG LT++ + D + + Sbjct: 184 REIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTESKEFITDPEGLIQSKANI 240 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +GQE+ PET+A+C A MLI+ + I+ GSTLS D +F + LSNPP Sbjct: 241 YLYGQEINPETYAICKADMLIKGENP-------ERIKFGSTLSNDQ-QNLQFDFMLSNPP 292 Query: 301 FGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +GK WE D+ + E K RF G+ SDG M+FL+++ +K++ G R Sbjct: 293 YGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRI 352 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A V + S LFN SG IR+ ++END +EAIVALPT++F+ T I T++WI++N+K+E Sbjct: 353 ASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKKSE 410 Query: 417 ERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 ++GKVQLIN T+ ++ ++ G+K+ + + +I +++++ + K ++LD F Sbjct: 411 HKKGKVQLINTTNEEYFSKMKKSLGQKQNEMTKEHIEKITELFLNFISSKDCKILDNEDF 470 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 GY +I + +P + F+ D A+L+ + L+ L+ + Q + E Sbjct: 471 GYTKIIIEKPKSVEFLKDDEKFAKLK-----------DKDKILEKLQELEQNPQDFKNRE 519 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT-EYEN 592 F+ K L VK KS I D++ T E Sbjct: 520 EFI---------KFLGVKLKKSEENLII----------------------DSDKTNNTEK 548 Query: 593 VPYLESIQD 601 +P +I+ Sbjct: 549 IPLKTNIKA 557 >gi|52549663|gb|AAU83512.1| type I site-specific restriction-modification system methylation subunit [uncultured archaeon GZfos29E12] Length = 455 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 174/477 (36%), Positives = 266/477 (55%), Gaps = 38/477 (7%) Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CGTGG LT + + +V GQE+ PE +A+C A ML++ Sbjct: 1 MYDPACGTGGMLTSCEDFIMSINKE----VDVVLFGQEVNPEIYAICKADMLMKGEN--- 53 Query: 269 RRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 KNI+ STLSKD F +F + +SNPP+G+KWE+D DAV+ E + G GRFG G Sbjct: 54 ----DKNIRGPFSTLSKDQFHDDKFDFIISNPPYGRKWEQDADAVKDEAERGFGGRFGAG 109 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP+I+DG +LFL H+ +K++ R A++ + SPLF G AG GES+IR+W++E+D + Sbjct: 110 LPRINDGQLLFLQHMISKMKSKEK--SRVAVITNGSPLFTGDAGQGESDIRKWMIESDFV 167 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIND 446 EAI+ALP LFF T I TY+W+L+N K ER GK+QLI+AT + +R G KR ++ Sbjct: 168 EAIIALPDQLFFNTGIHTYIWVLTNVKPVERVGKIQLIDATSFFKKMRKSLGNKRNYLSA 227 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 D ++I+++Y E K+ ++ D FGY ++ V RPL++++ + + L + +RK Sbjct: 228 DDIKEIVELYDDFEENKYCKIFDNEVFGYTKVIVERPLQLNYQVAEERRENLYSIPVFRK 287 Query: 507 LSPLHQS-------------FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 L+ + + + +++I + + E K S Sbjct: 288 LAESKKKDPELKLKEEEEGKKKQEEIINNLKKIGNHSYKNWDEFEKKVKEALK--GFDLS 345 Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613 +FI I A D AD V D G +PD NL + E +P + I+ YF REV P+ PD Sbjct: 346 PNFIKNIILALSEHDDIADYVLDKKGNKLPDPNLRDSEKIPLKQDIEKYFDREVKPYYPD 405 Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670 A +D+ + +VGYEINF ++FY Y+P R L++I+ ++K V +I L + Sbjct: 406 ALMDR--------KKDKVGYEINFTKYFYVYKPPRPLEEIEKDIKEVIEEIQELFGD 454 >gi|310826742|ref|YP_003959099.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612] gi|308738476|gb|ADO36136.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612] Length = 597 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 179/498 (35%), Positives = 257/498 (51%), Gaps = 36/498 (7%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + AN IW A L+G +K ++G VILP +++R L PTR V Y Sbjct: 12 TNIQEKANLIWNVANSLFGAYKPHEYGLVILPMVVIKRFHDCLLPTREKVLATYEKVKQL 71 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSST 123 + +GY FYNTS+Y+ L + N + N E+YI FSDN I + F + Sbjct: 72 AVKDGFLRTASGYRFYNTSQYTFERLKADPENIKTNFEAYINGFSDNVIDILANMGFFTQ 131 Query: 124 IARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 I R+ AG+LY++ +F+ +++P+ + M ++E+L++ F E A T R Sbjct: 132 IERMADAGVLYQVISDFTADNADMNPEKISAIDMGYVFENLVQCFSESYDEEAGAHFTSR 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+++L LL D +++P T+YD GT LT V +I Sbjct: 192 DIIYLMCDLLTMNADFSGEDAPAK--TVYDMAMGTSQMLTCMEERVHALDKEAEIIC--- 246 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQE+ P T + A MLIR + +N+Q G TL+ D F G F Y +SNPPF Sbjct: 247 -YGQEINPFTFGIAKADMLIRGGDP-------ENMQFGDTLNADKFKGYTFDYIISNPPF 298 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G W+++ VEKEHK G+ GRFG GLP+ SDG MLFL++ KL+ GR AI+ + Sbjct: 299 GIDWKREAADVEKEHKLGDAGRFGVGLPQKSDGQMLFLLNGIAKLKDT----GRMAIIQN 354 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 S LF G AGSG SEIRR+++END ++AIV LP D F+ T IATY+WI+S K E R + Sbjct: 355 GSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGIATYIWIVSKNKPETHRER 414 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKF--------------SR 466 + LI+A+ + R G KR I + R I Y + F S+ Sbjct: 415 ILLIDASKCCEARRRPIGNKRVDITESCRNLITQAYSEYRSAIFTKTLEDKKTVLTCKSK 474 Query: 467 MLDYRTFGYRRIKVLRPL 484 +LD + GY +I V P Sbjct: 475 VLDAISLGYNKITVESPA 492 >gi|229829855|ref|ZP_04455924.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM 14600] gi|229791153|gb|EEP27267.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM 14600] Length = 595 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 189/590 (32%), Positives = 273/590 (46%), Gaps = 48/590 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + AN IW A L+G +K ++G VILP +++R L PT V Y Sbjct: 13 NIKEKANLIWNVANSLFGAYKPHEYGLVILPMAVIKRFHDCLLPTHDKVLATYEKIKHLA 72 Query: 67 IDLESFVKVAG-YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G Y FYN S ++ L + N + N ESYI FSDN I + F + Sbjct: 73 VKEGFLRTATGGYRFYNVSPFTFERLKADPENIKANFESYINGFSDNVIDILANMGFFNQ 132 Query: 124 IARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 I R+ AG+LY++ +F ++ PD + M ++E+L++RF E A T R Sbjct: 133 IDRMNDAGVLYQVISDFCEDSADMSPDKISAVDMGYVFENLVQRFSESYDEEAGAHFTSR 192 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 D+++L +L D +SP T+YD GT LT + + +I Sbjct: 193 DIIYLMCDMLTMEADFSSSDSPAK--TVYDMAMGTSQMLTCMEERIKSLDAEAQIIC--- 247 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQE+ P T + A +LIR + D N++ G TL+ D F G F YC+SNPPF Sbjct: 248 -YGQEINPFTFGIAKADVLIRGGDPD-------NMRFGDTLNDDKFKGYTFDYCISNPPF 299 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G W+++ VEKEHK G+ GRFG GLP SDG MLF+++ KL+ GR AI+ + Sbjct: 300 GIDWKREAADVEKEHKKGDAGRFGVGLPAKSDGQMLFMLNGIAKLKDT----GRMAIIQN 355 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 S LF G AGSG SEIRR+++END ++AIV LP D F+ T IATY+WI++ K R + Sbjct: 356 GSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGIATYVWIITKDKPVTHREQ 415 Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKF-------------SRM 467 V LI+A+ + R+ G KR I + R I+ Y ++ + S+ Sbjct: 416 VLLIDASGCYEQRRSPIGNKRVDITEVCRDLIVKAYSDYDSKTYEKKIDSNTAIVVKSKR 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 LD + GY +I V P LD G L+ S P+ + + Sbjct: 476 LDSISLGYNKITVESP-----QLDDDGEPILKKGKKVADTSKRDTETV-----PLDEDMD 525 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 Y E + KV F F AD + Sbjct: 526 VYFEREVLPYRPGAWIDKSKTKVGYEIPFTKTFYEYLEM--ESADEIAKR 573 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 28/268 (10%) Query: 414 KTEERRGKVQLINATDLWTSIRNEGK---KRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 K ++ + N + L+T G +R II +D I+ + S Sbjct: 343 KLKDTGRMAIIQNGSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPND------SFYNTG 396 Query: 471 RTFGYRRIKVLRPLRMSFI---LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 I +P+ +D +G K + ++ + ++ + Y Sbjct: 397 IATYVWIITKDKPVTHREQVLLIDASGCYEQRRSPIGNK-----RVDITEVCRDLIVKAY 451 Query: 528 PYGWAESFVKESIKSNEA--KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585 ++++ K+ + K+ ++ + + D +P+ G+ + DT Sbjct: 452 SDYDSKTYEKKIDSNTAIVVKSKRLDSISLGYNKITVESPQLDDDGEPIL-KKGKKVADT 510 Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645 + + E VP E + YF REV P+ P A+I DK +VGYEI F + FY+Y Sbjct: 511 SKRDTETVPLDEDMDVYFEREVLPYRPGAWI--------DKSKTKVGYEIPFTKTFYEYL 562 Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673 +I ++ E + L + Sbjct: 563 EMESADEIAKRIEEHEHSLMQKLRALFG 590 >gi|163788851|ref|ZP_02183296.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1] gi|159876088|gb|EDP70147.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1] Length = 603 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 182/593 (30%), Positives = 292/593 (49%), Gaps = 51/593 (8%) Query: 1 MTEFTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M T S + NFIW A+D+ + + VILP T+LRRL+ ALE ++ V + + Sbjct: 1 MNLDTQSLQPIINFIWTVADDVLINKYLENQYQDVILPMTVLRRLDLALEKSKDKVLKTH 60 Query: 60 LAFGGSNIDLESFV----KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113 F +L+ + +G +FYNTS Y++ L N +N Y+ +S+N + Sbjct: 61 NEFKSKMDNLDGLLTSETHGSGLAFYNTSPYTMKKLLDDPKNIDSNFLDYLNGYSENVQD 120 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 I F F + + LE G+ + + + F EL P+ + M ++E LIRRF + + Sbjct: 121 IISKFKFRNQLETLENGGITFSLIEKFCNPKVELRPEKISPMAMGYMFEDLIRRFNEKTN 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 A TPR+++ L T L+ P + +YDP G+G LT + + + Sbjct: 181 AAAGRHFTPREIIELMTHLVYLPVKEKIQNG---TFLVYDPCAGSGAMLTQSKKYATNPD 237 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGK 290 K +GQE E +A C + ML++ + D I+ GSTLS+ F Sbjct: 238 GEIKSKATFHLYGQENTGEMYATCKSDMLLKNEDPDK-------IKFGSTLSEYGFEPNL 290 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEK---EHKNGELGRFGPGLP-------------KISDG 334 +F++ L+NPP+G W++D ++ + ++ RF + + +DG Sbjct: 291 KFNFMLTNPPYGTSWKEDLKSLTNSSNKKQDIVDTRFNLKIKNFKGELEEQTLASRSNDG 350 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 ++F++H+ +K++ P +GG R A V + S LF G AGSGES IR+++LENDL+E I+ LP Sbjct: 351 QLMFMLHMLSKMKDPKDGGSRIASVHNGSALFTGDAGSGESGIRQYILENDLLECIIQLP 410 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRN-EGKKRRIINDDQRR 450 D+F+ T IATY+WILSN K E+R+GKVQLINA+ + +R G KR +N + Sbjct: 411 NDMFYNTGIATYIWILSNVKEEKRKGKVQLINASSKDEFSKKMRKPLGDKRVELNPNHIL 470 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I ++Y E ++S++ + FGY +I V +P R D+ G +T +K +P Sbjct: 471 DIQNLYFDFEENQYSKIFNNEDFGYYQITVHQPER-----DEDG-----KIVTDKKGNPK 520 Query: 511 HQSFWLDILK-PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 D PM + I Y E + K +KV + F Sbjct: 521 SDKDLKDSENVPMTEDIDTYFKREVIPYAPDAWYDKKKMKVGYNIPLTKHFYK 573 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 82/231 (35%), Gaps = 28/231 (12%) Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 + + + D++ + + +L R+ KV A + + Sbjct: 400 NDLLECIIQLPNDMFYNTGIATYIWILSNVKEEKRKGKVQLIN-----------ASSKDE 448 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561 + + PL ++ Y E I +NE Sbjct: 449 FSKKMRKPLGDKRVELNPNHILDIQNLYFDFEENQYSKIFNNEDFG---------YYQIT 499 Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621 +D VTD G D +L + ENVP E I YF REV P+ PDA+ Sbjct: 500 VHQPERDEDGKIVTDKKGNPKSDKDLKDSENVPMTEDIDTYFKREVIPYAPDAW------ 553 Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 DK+ +VGY I + FY+Y R L I E+ +E + LL+E+ Sbjct: 554 --YDKKKMKVGYNIPLTKHFYKYDELRNLNIITNEILSLEKETDGLLKEII 602 >gi|313634903|gb|EFS01308.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067] Length = 421 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 176/432 (40%), Positives = 253/432 (58%), Gaps = 22/432 (5%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF--GG 64 + +FIW AE L G++K ++G+VILP ++RR +C LE T+ V E+Y Sbjct: 2 NFQDKVSFIWSIAEVLRGEYKPENYGEVILPLVVIRRFDCVLEKTKPEVLEQYKILQNKP 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + K + FYN S Y + L N +N + Y+ FS NA I + F+F S Sbjct: 62 EGVQTALLTKTSKEDFYNISNYGFNNLLSDPDNIADNFKDYLNGFSKNANEIIQYFNFDS 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I +L++ LLY++ K FS I+LHP+TV + M I+E LIRRF + A D TPR+ Sbjct: 122 EIDKLDRNDLLYEVLKRFSEIDLHPNTVSNIEMGYIFEELIRRFSE--NAEAGDHYTPRE 179 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V+ L LL DD + + G+ +TLYD GTGG + A ++ L+ Sbjct: 180 VIRLMVHLLF-NDDRIDIATEGITKTLYDCAAGTGGMGSVANEYMKSHN----NLGELIF 234 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 H QE+ E++A+ + +L+++ +++ NI+ G+TL+ D F F + +SNPP+G Sbjct: 235 HAQEVNEESYAIAKSDLLLKKEDAN-------NIRLGNTLTNDKFKTDTFDFMISNPPYG 287 Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAI 358 W+K + AV+ EH G GRFG GLP+ SDG +LFL HL +K++ G R AI Sbjct: 288 VDWKKVEKAVKDEHNDLGFNGRFGAGLPRTSDGQLLFLQHLVSKMKPVTEENPYGSRIAI 347 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +++ SPLF G AGSGESEIRR+L ENDL+E +VALP DLF+ T I+TY+WIL+N K R Sbjct: 348 IMNGSPLFTGDAGSGESEIRRYLFENDLVEGLVALPNDLFYNTGISTYIWILTNNKETHR 407 Query: 419 RGKVQLINATDL 430 RGKV L+NA D Sbjct: 408 RGKVTLVNAVDF 419 >gi|126434813|ref|YP_001070504.1| N-6 DNA methylase [Mycobacterium sp. JLS] gi|126234613|gb|ABN98013.1| N-6 DNA methylase [Mycobacterium sp. JLS] Length = 371 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 151/382 (39%), Positives = 214/382 (56%), Gaps = 22/382 (5%) Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGGRAAIV 359 W + AV E++ G GRFGPGLP++SDGS+LFLMHL +K++ GG R AIV Sbjct: 1 MAWNTQQKAVTDEYEQRGFAGRFGPGLPRVSDGSLLFLMHLISKMQPVKGGEGGSRLAIV 60 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 L+ SPLF G AGSGES IR+W++ENDL++AI+ALPTD+F+ T IATY+WIL N K +R+ Sbjct: 61 LNGSPLFTGGAGSGESNIRQWIIENDLLDAIIALPTDMFYNTGIATYIWILDNNKPAKRK 120 Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSREN-------GKFSRMLDYR 471 GKVQLINA D++ +R G KR+ + +I +Y S N S++ Sbjct: 121 GKVQLINAVDMYGKMRKSLGSKRKELRPKDIERICHLYDSFRNEHGTDERPSHSKVFKSE 180 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 FGY + V RPL++ F + + + A + KL P Q+ + L ++ + + Sbjct: 181 EFGYSTVTVERPLQLRFTPTEEKVEEVLAQKSIDKLKPGEQAAVRNALTGLIG--WEWMH 238 Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYE 591 + FV E +K K K + + G D +A VTD G+ PD L + E Sbjct: 239 RDEFVTE-LKDALRKAGLTKPGAPLVKTIWSTIGEHDEKALIVTDSKGDTEPDPALRDTE 297 Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651 NVP + I +YF REV PHVPDA+ID +VGYEI F R FY+Y R L+ Sbjct: 298 NVPLTDDIDEYFAREVVPHVPDAWIDHDK--------TKVGYEIPFTRHFYRYVAPRPLE 349 Query: 652 DIDAELKGVEAQIATLLEEMAT 673 +I +L+ + +I +L E+ Sbjct: 350 EIQKDLRVLVGEIQAMLAEVGA 371 >gi|56421441|ref|YP_148759.1| hypothetical protein GK2906 [Geobacillus kaustophilus HTA426] gi|56381283|dbj|BAD77191.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 372 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 137/380 (36%), Positives = 212/380 (55%), Gaps = 26/380 (6%) Query: 312 VEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFN 367 + +EH+ G GRFG GLP+ISDG +LFL HL +K++ G R AI+++ SPLF Sbjct: 1 MREEHESKGFNGRFGAGLPRISDGQLLFLQHLVSKMKPVSEENPKGSRIAIIMNGSPLFT 60 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 G AGSGESEIRR+L+ENDL+E IVALP LF+ T I+TY+WIL+N K R+GK+QL+NA Sbjct: 61 GDAGSGESEIRRYLIENDLVEGIVALPDQLFYNTGISTYIWILTNNKNPLRKGKIQLVNA 120 Query: 428 TDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486 + + ++ G KR ++++ +I+ IY + G+ ++ D FGYR+I + RPLR+ Sbjct: 121 VNFYQKMKKSLGDKRNELSEEHINEIVRIYGDFKEGEHCKIFDNEDFGYRKITIERPLRL 180 Query: 487 SFILDKTGLARLEADITWRKLS-------------PLHQSFWLDILKPMMQQIYPYGWAE 533 +F +D+ + L ++ L+ + I++ ++ + Sbjct: 181 NFKIDEERIKELYNQTAFKNLATSKKRGEAGLKEIEEGKRLQEQIIEALLSIKDGVVYKN 240 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593 K +K + + + A ++A KD AD D G PD +L + ENV Sbjct: 241 REEFTKKIKELFKEKDIKINATLLKAILSALSEKDETADICRDSKGNPEPDPDLRDTENV 300 Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653 P E I +YF REV P+VPDA+I D+ ++GYEI F R+FY+Y P R +++ Sbjct: 301 PLKEDIYEYFEREVKPYVPDAWI--------DETKTKIGYEILFTRYFYKYTPLRSSEEV 352 Query: 654 DAELKGVEAQIATLLEEMAT 673 E+K +E I L+++ Sbjct: 353 IKEIKELEGSILEKLKKVLG 372 >gi|201067948|ref|ZP_03217819.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni BH-01-0142] gi|200004472|gb|EDZ04965.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni BH-01-0142] Length = 469 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 169/530 (31%), Positives = 270/530 (50%), Gaps = 71/530 (13%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + + M ++E LIR+F E +E A + TPR+++ L T L+ P K+ + Sbjct: 1 MSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLI 57 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YD CG+GG LT++ + D + + +GQE+ PET+A+C A MLI+ Sbjct: 58 YDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGENP--- 114 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFG 325 + I+ GSTLS D +F + LSNPP+GK WE D+ + E K RF Sbjct: 115 ----ERIKFGSTLSNDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFS 169 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G+ SDG M+FL+++ +K++ G R A V + S LFN SG IR++++END Sbjct: 170 VGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKYIIEND 227 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRN-EGKKRR 442 +EAIVALPT++F+ T I T++WI++N+K E ++GKVQLINAT+ ++ ++ G K+ Sbjct: 228 YLEAIVALPTNMFYNTGIPTFIWIITNKKPEHKKGKVQLINATNKEYFSKMKKSLGSKQN 287 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + + +I +++ + K ++LD FGY +I + +P + F+ D A+L+ Sbjct: 288 EMTKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEFLKDDEKFAKLK--- 344 Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 + L+ L+ + + + E F+ K L VK KS I Sbjct: 345 --------DKDKILEKLEQLEKNPQDFKNREEFI---------KFLGVKLKKSEENLII- 386 Query: 563 AFGRKDPRADPVTDVNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621 D++ T E +P IQ+Y+ EV P+V +++I Sbjct: 387 ---------------------DSDKTNNTEKIPLKTDIQNYYDTEVKPYVANSWIAWDSA 425 Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 VGYEI FN++FY Y P RKL +ID+ELK +E + LL ++ Sbjct: 426 S--------VGYEILFNKYFYTYTPPRKLSEIDSELKALEKETQELLNKI 467 >gi|257790529|ref|YP_003181135.1| N-6 DNA methylase [Eggerthella lenta DSM 2243] gi|257474426|gb|ACV54746.1| N-6 DNA methylase [Eggerthella lenta DSM 2243] Length = 799 Score = 429 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 165/489 (33%), Positives = 243/489 (49%), Gaps = 37/489 (7%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKV 75 W A+ L G +K ++G VILP T+++R L PT V E + + + Sbjct: 26 WNVADTLRGPYKPHEYGLVILPMTVIKRFHDCLLPTHGKVVEAAEEYKNFAVKDGFLREA 85 Query: 76 AGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-- 131 +GY FYNTS+++ TL + N +N + Y+ FS+N + I DF I RL Sbjct: 86 SGYPFYNTSKFTFETLKADPANIEDNFKDYLNGFSENVQDILARMDFFRQIERLSDPDAP 145 Query: 132 LLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 LLY++ +F ++ P+ + M I+E+LI+RF E A T RD+V+L T Sbjct: 146 LLYQVVSDFCAERADMSPEKIKPVDMGYIFENLIQRFSESYDEDAGAHFTSRDIVYLMTD 205 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 LL+ D +F + +T+YD T GT L+ + ++ GQE P Sbjct: 206 LLIAADPHVFDGD-RISKTVYDQTMGTSQMLSCTEERLRQLDDDARV----TCFGQEFNP 260 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 T + A LIR + N++ G TLS D F +F YC+SNPPFG W+ ++ Sbjct: 261 FTFGIAKASALIRGED-------DANMRFGDTLSSDKFADYKFDYCISNPPFGGDWKLEE 313 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 AV KE K RF GLP DG MLF+++ KL+ G IV +SPL+ G+ Sbjct: 314 TAVRKEAKLTG-SRFHVGLPARGDGQMLFMLNGIAKLKDE----GVMVIVQDASPLYKGK 368 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 SGE +IR ++LEND ++AI+ L D F+ T + T+LW+++ K E+R GKVQLI+A+ Sbjct: 369 PESGEDKIRSYILENDWLDAIIRLSGDAFYNTGLVTFLWVINKGKPEKRAGKVQLIDASG 428 Query: 430 LWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSR-------------MLDYRTFGY 475 R GKKR I R +L+ + E +S + D FGY Sbjct: 429 CCVPRNRPIGKKRNDITKFCRDLVLEAFSDFETKDYSSSSESGNAIHVRSLVCDAADFGY 488 Query: 476 RRIKVLRPL 484 R+ V PL Sbjct: 489 NRVGVCEPL 497 >gi|254410687|ref|ZP_05024466.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196182893|gb|EDX77878.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 440 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 145/446 (32%), Positives = 224/446 (50%), Gaps = 51/446 (11%) Query: 6 GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----L 60 + L +FIW A+D L F + VILP +LRRL+C LE T+ V E+ Sbjct: 4 STHNKLVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEETKDKVTEEVRFQRE 63 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAI 114 G + +D E + + Y FYN S+++L L ST N ++Y+ FS+N K I Sbjct: 64 DVGLTELDPEGLREASDYVFYNVSDWTLKKLVSTAANNRQILEENFKAYLNGFSENVKEI 123 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEH 161 FD S I ++ ++ +L + + F+ E++ + M ++E Sbjct: 124 INRFDLRSQIRKMSQSDVLLDVLEKFTSPEINLSPHEITTPDGRKLPGLSNLGMGYVFEE 183 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LIRRF E +E A + TPR+V+HL T L+ P YD CG+GG LT Sbjct: 184 LIRRFNEENNEEAGEHFTPREVIHLMTHLVFLPIKDRL----PPTLLGYDGACGSGGMLT 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++ N + D + +G+E+ ET+A+C + M+I+ +NI+ GST Sbjct: 240 ESQNFLQDPNGEIAADTQVFLYGKEVNGETYAICKSDMMIKGNNP-------ENIKFGST 292 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL------------- 328 L+ D F+ +F + L NPP+GK W+ + + KN RF L Sbjct: 293 LATDEFSDLKFDFMLENPPYGKSWKTSQKYIMD-GKNVLDSRFEVKLKSFQGEWETIGAV 351 Query: 329 PKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + +K++ G R A V + S LF G AGSGES IRR+++END Sbjct: 352 PRSSDGQLLFLMDMVSKMKPLEQSPLGSRIASVHNGSALFTGDAGSGESNIRRYIIENDW 411 Query: 387 IEAIVALPTDLFFRTNIATYLWILSN 412 +EAI+ LP ++F+ T I+TY++ + Sbjct: 412 LEAIIQLPQNMFYNTGISTYIYGIRK 437 >gi|167039867|ref|YP_001662852.1| N-6 DNA methylase [Thermoanaerobacter sp. X514] gi|300915377|ref|ZP_07132691.1| N-6 DNA methylase [Thermoanaerobacter sp. X561] gi|166854107|gb|ABY92516.1| N-6 DNA methylase [Thermoanaerobacter sp. X514] gi|300888653|gb|EFK83801.1| N-6 DNA methylase [Thermoanaerobacter sp. X561] Length = 552 Score = 415 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 161/459 (35%), Positives = 238/459 (51%), Gaps = 39/459 (8%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNA 111 +K L G + AG SF N+S + L L S + + +Y+ FS N Sbjct: 1 MKKKLDEAGITNQTAALCNAAGQSFCNSSPFCLRDLTSRAKKQTLKADFIAYLDGFSPNV 60 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNF----------------SGIELHPDTVPDRVM 155 + I + F F + I + A +L + + F E+ + + M Sbjct: 61 QEILDKFKFRNQIDTMIDADILGAVIEKFVSPTINLSPNPVYKDDEKKEIRLPGLDNHTM 120 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 I+E LIRRF E +E A + TPRDVV L L+ P K+ + YD CG Sbjct: 121 GVIFEELIRRFNEENNEEAGEHFTPRDVVELMADLIFVPVADKIKD---ATYSCYDGACG 177 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 TGG LT A + + + + GQE+ PET+A+ + +L++ + D + + Sbjct: 178 TGGMLTVAQDRLIELAEKAGRKVSIHLFGQEINPETYAIAKSDLLLQG-----QGDQADH 232 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GP 326 I GSTLS D F +F + LSNPP+GK W+ D D + + K+ RF Sbjct: 233 IGFGSTLSNDQFPTYQFDFMLSNPPYGKSWKVDADKLGGK-KDIMDSRFVTNFADDPNFS 291 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 +P+ SDG +LFL++ K++ G R V + S LF G AGSGES RR+L+ENDL Sbjct: 292 MIPRTSDGQLLFLLNNVAKMKKTTELGSRIVEVHNGSSLFTGDAGSGESNARRYLIENDL 351 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445 +EAI+ALP ++F+ T I TY+W+LSN K E R+ K+QLI+AT L + +R N GKK Sbjct: 352 VEAIIALPENMFYNTGIGTYIWVLSNNKAEHRKSKIQLIDATLLKSPLRKNLGKKNCEFT 411 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484 + RRQILD+Y++ E ++S++ D FGY ++ VLRP Sbjct: 412 SEIRRQILDLYMAFEENEYSKIFDNNEFGYWKVTVLRPA 450 >gi|302380078|ref|ZP_07268553.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3] gi|302312098|gb|EFK94104.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3] Length = 480 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 153/491 (31%), Positives = 236/491 (48%), Gaps = 52/491 (10%) Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 LT A NH+ + + GQE+ +++AV +A MLI+ + ++N + Sbjct: 1 MLTTAYNHLHNLNPKA----DIRLFGQEIMGQSYAVGLAEMLIKGQD-------ARNFKH 49 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKIS 332 T +D F + + L NPPFG W + AV + HK G R+ GLP Sbjct: 50 ADTFKEDCFEDTKMRFVLENPPFGMSWGGKDAKAGQEQAVLENHKRGNDSRWPAGLPSSG 109 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 D +LF+ +K++ GRAAI+ + SPLFNG SGES+IRRWLLENDLIEAI+A Sbjct: 110 DAQLLFMQSAIDKMDDEH---GRAAIITNGSPLFNGGVSSGESQIRRWLLENDLIEAIIA 166 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQ 451 +PTDLF+ T IATY+WILS K +ER GK+QLI+AT+++ ++R G KR+ + R+ Sbjct: 167 MPTDLFYNTGIATYVWILSKNKRQERIGKIQLIDATEIYHTLRKSLGNKRKEFTAEDRKT 226 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE------------ 499 I +Y S++ D F YR V++PL+ S+ ++ + LE Sbjct: 227 ITKLYSDFVENDKSKIYDNEEFIYREYTVMQPLQRSYAINDERIENLETSGKLNSFYDKT 286 Query: 500 -------ADITWRKLSPLH----------QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 T KL+ + + I + + + I + E + + Sbjct: 287 KHDEILEKQETSEKLTKTETNNLKKYTENEKTYNKIFEILKENITDKKYMSVDEFEPVVN 346 Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602 + ++ +K+ I+ D AD TD G I D + + E V E+I+DY Sbjct: 347 DLL--SELSLNKTVFNNIIDGLSEMDKEADIQTDKKGNVIYDKDTKDTEIVNVRENIEDY 404 Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662 REV PH+PDA + G EI F R+FY+YQ R +++ E +E Sbjct: 405 MKREVLPHIPDAKSFFEEDVTLKNPKIKTGAEIPFTRYFYKYQAPRPSEELAQEFLELED 464 Query: 663 QIATLLEEMAT 673 + ++E+ Sbjct: 465 IVNQKVKELFG 475 >gi|254448309|ref|ZP_05061771.1| type I restriction-modification system, M subunit [gamma proteobacterium HTCC5015] gi|198262176|gb|EDY86459.1| type I restriction-modification system, M subunit [gamma proteobacterium HTCC5015] Length = 580 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 129/584 (22%), Positives = 222/584 (38%), Gaps = 58/584 (9%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ T + L +F+W+ A+ L G+ +++ I L+RL A E + +V + Y+ Sbjct: 1 MSQ-TITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYM 59 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112 G S +FY + + L I + + + Sbjct: 60 GKGKSEDQARELADDEDEYDKTFYIPPVARWGAIKDLKHDIGAELNKATEAIEEHNGSLE 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171 + DF + +L L + +FS L + + YE+LI+ F Sbjct: 120 GVLVSIDF-NIKNKLSDKK-LQDLLSHFSRHRLRNEDFERPDLLGTAYEYLIKMFADSAG 177 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV L +LL P +YDPT G+GG L NH+A G Sbjct: 178 KKGGEFYTPSEVVQLLVSLL----------KPHAGMRIYDPTAGSGGMLVQTRNHLATHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + P L +GQE+ T A+C M + + S +I++G TL Sbjct: 228 ---ENPSNLSLYGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLRDPQHTQGG 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + F ++NPPF K ++E +N GRF G P G + F+ H+ L Sbjct: 278 SLMTFDRVIANPPFSLK-----KWGKEEAENDPYGRFPYGTPPKDAGDLAFVQHMIASL- 331 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N G +V+ LF G E IR+ +LE+DL+EA+V LP LF+ T I L Sbjct: 332 ---NAEGMMGVVMPHGVLFRGA---SEKAIRKGILEDDLLEAVVGLPAALFYGTGIPACL 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 I++ K +ER+GKV IN+ + GK + + +I++ + + + K +S+ Sbjct: 386 LIINKNKPQERKGKVLFINSELEYEE----GKNQNKLRQQDIEKIVNTFENFADIKRYSK 441 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 ++ + + + + + + Sbjct: 442 VVPLEEIEENDFNLNIRRYADTSPPPEIYDVRAILHGGIPVREVENEYIREEILEGFDVS 501 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 + + S + K A +A G D + Sbjct: 502 VVFVKRDE-----EPSADEGYYDFKPEIDSKEAIRDAVGEVDAK 540 >gi|117922226|ref|YP_871418.1| type I restriction-modification system, M subunit [Shewanella sp. ANA-3] gi|117614558|gb|ABK50012.1| type I restriction-modification system, M subunit [Shewanella sp. ANA-3] Length = 574 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 125/477 (26%), Positives = 200/477 (41%), Gaps = 52/477 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT+ + L +F+W+ A+ L G+ +++ I L+RL A E + V + YL Sbjct: 1 MTQK-LTLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYL 59 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112 G + E+ + +F+ S L + L I ++ + + Sbjct: 60 GKGKTKEQAEALAQDEDEYDKTFFVPKSARWSALKDLKHDIGATLNKATEAIEEYNSSLE 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171 + DF + +L L + +FS L + + YE+LI+ F Sbjct: 120 GVLVTIDF-NIKNKLSDKK-LRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV L ALL P +YDPT G+GG L N++A G Sbjct: 178 KKGGEFYTPSEVVSLLVALL----------KPKAGMRIYDPTSGSGGMLVQTRNYLAAHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + P L GQE+ T A+C M + + LS +I++G TL + Sbjct: 228 ---ENPGNLSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGG 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F ++NPPF + E N GRF G P G + F+ H+ Sbjct: 278 ELMTFDRVIANPPFSL-----AKWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N G +V+ LF G S E IR+ +LE+DL+EA++ LP+ LF+ T I L Sbjct: 331 --TNAEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTGIPACL 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 I++ RK ER+GKV IN + GK + + +I+ + + +N K Sbjct: 386 LIINKRKAAERKGKVLFINGELEYEE----GKNQNKLRPQDIEKIVTTFNNYQNIKR 438 >gi|77166354|ref|YP_344879.1| Type I restriction-modification system M subunit [Nitrosococcus oceani ATCC 19707] gi|254435849|ref|ZP_05049356.1| type I restriction-modification system, M subunit [Nitrosococcus oceani AFC27] gi|76884668|gb|ABA59349.1| Type I restriction-modification system M subunit [Nitrosococcus oceani ATCC 19707] gi|207088960|gb|EDZ66232.1| type I restriction-modification system, M subunit [Nitrosococcus oceani AFC27] Length = 574 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 121/486 (24%), Positives = 195/486 (40%), Gaps = 53/486 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ + L +F+W+ A+ L G+ +++ I L+RL A E + V + YL Sbjct: 1 MSH-NITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYL 59 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112 G ++ + +FY L + L I + + + Sbjct: 60 GKGKTDAEARELANDEDEYDKTFYIPPIARWGALKDLKHDIGTELNKATEAIEEVNPSLE 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171 + DF + +L L + ++FS L + + YE+LI+ F Sbjct: 120 GVLVSIDF-NIKNKLSDKK-LRDLLRHFSRHRLRNEDFEHPDLLGTAYEYLIKMFADSAG 177 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV L ALL P +YDPT G+GG L N++A G Sbjct: 178 KKGGEFYTPSEVVRLLVALL----------KPQAGMRIYDPTAGSGGMLVQTRNYLARHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + P L GQE+ T A+C M + + S +I++G TL + Sbjct: 228 ---ENPANLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQGG 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F ++NPPF K + E GRF G P G + F+ H+ L Sbjct: 278 ELMTFDRVIANPPFSLK-----KWGKDEADKDAYGRFPYGTPPKDAGDLAFVQHMIASL- 331 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N G +V+ LF G E IR+ +L++DL+EA++ LP LF+ T I L Sbjct: 332 ---NAEGMMGVVMPHGVLFRGA---SEKAIRQGILKDDLLEAVIGLPAALFYGTGIPACL 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 IL+ K ER GKV IN + GK + + +I+ + K +S+ Sbjct: 386 LILNKNKPAERTGKVLFINGELEFQE----GKNQNKLRPQDMDKIVRTFDDYREIKRYSK 441 Query: 467 MLDYRT 472 ++ Sbjct: 442 VVSLAD 447 >gi|120597148|ref|YP_961722.1| type I restriction-modification system, M subunit [Shewanella sp. W3-18-1] gi|120557241|gb|ABM23168.1| type I restriction-modification system, M subunit [Shewanella sp. W3-18-1] Length = 574 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 125/486 (25%), Positives = 208/486 (42%), Gaps = 53/486 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT+ + L +F+W+ A+ L G+ +++ I L+RL A E + +V + YL Sbjct: 1 MTQK-LTLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYL 59 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112 G + E+ + +F+ S L + L I ++ + + Sbjct: 60 DKGKTQEQAEALAQDEDEYDKTFFVPQTARWSELKDLKHDIGATLNKATEAIEEYNSSLE 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171 + DF + +L L + +FS L + + YE+LI+ F Sbjct: 120 GVLVTIDF-NIKNKLSDKK-LRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV L ALL P +YDPT G+GG L N++A G Sbjct: 178 KKGGEFYTPSEVVSLLVALL----------KPKAGMRIYDPTSGSGGMLVQTRNYLAAHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + P L GQE+ T A+C M + + LS +I++G TL + Sbjct: 228 ---ENPGNLSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGG 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F ++NPPF + E N GRF G P G + F+ H+ Sbjct: 278 ELMAFDRVIANPPFSL-----AKWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N G +V+ LF G S E IR+ +LE+DL+EA++ LP+ LF+ T+I L Sbjct: 331 --TNAEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTSIPACL 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 I++ RK +R+GKV IN + GK + + +I+ + + +N K +++ Sbjct: 386 LIINKRKAADRKGKVLFINGELEYEE----GKNQNKLRPQDIEKIVTTFNNYQNIKRYAQ 441 Query: 467 MLDYRT 472 ++D Sbjct: 442 VVDISE 447 >gi|120555301|ref|YP_959652.1| type I restriction-modification system, M subunit [Marinobacter aquaeolei VT8] gi|120325150|gb|ABM19465.1| type I restriction-modification system, M subunit [Marinobacter aquaeolei VT8] Length = 574 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 127/583 (21%), Positives = 213/583 (36%), Gaps = 62/583 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ + L +F+W+ A+ L G+ +++ I L+RL A E + V + Y+ Sbjct: 1 MSH-NITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYM 59 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112 G + +FY + + + L I ++ + Sbjct: 60 DKGKTEDQARELADDEDEYDKTFYIPPVARWGVIKDLKHDIGSGLNTATEAIEEYNPVLE 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171 + DF + +L L + +FS L + + YE+LI+ F Sbjct: 120 GVLVSIDF-NIKNKLSDKK-LRDLLSHFSRYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV L ALL P +YDPT G+GG L N++A G Sbjct: 178 KKGGEFYTPSEVVQLLVALL----------KPHAGMRIYDPTAGSGGMLVQTRNYLAAHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + P L GQE+ T A+C M + + S +I++G TL + Sbjct: 228 ---ENPSNLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQGG 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F ++NPPF K ++E GRF G P G + F+ H+ L Sbjct: 278 ELMTFDRVIANPPFSLK-----KWGKEEADGDSYGRFPYGTPPKDAGDLAFVQHMIASLN 332 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G +V+ LF G S E IR+ +L +DL+EA+V LP LF+ T I L Sbjct: 333 SE----GMMGVVMPHGVLFRG---SSEKAIRQGILNDDLLEAVVGLPAALFYGTGIPACL 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I++ K ER+GKV IN+ + GK + + +I+ + K Sbjct: 386 LIINKNKPAERKGKVLFINSELEYEE----GKNQNKLRQQDIEKIVQTFDDYAELKRYSK 441 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + + L+ A + + + + + I Sbjct: 442 V---------VTLAEIAENDYNLNIRRYADTSPPPEIFDVRAILHGGIP-VREVESEYIR 491 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 + V +A+ K A G D + Sbjct: 492 EEILEDFDVSTVFVKRDAEYYDFKPEIGTKEAIRETVGEIDAK 534 >gi|209695268|ref|YP_002263197.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238] gi|208009220|emb|CAQ79477.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238] Length = 587 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 121/480 (25%), Positives = 190/480 (39%), Gaps = 52/480 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT S L +F+W+ A+ L G+ ++F I L+RL A E ++ V + YL Sbjct: 1 MTNK-LSLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRLSDAFEESQEKVIQYYL 59 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLESY---IASFSDNAK 112 G + E +F+ S L N L I F+ + Sbjct: 60 DKGKTQAQAEELANDEDEYDSTFFIPENARWSVLKDLKHNIGEQLNKATESIEEFNSALE 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171 + DF + +L L + +F+ L + + YE+LI+ F Sbjct: 120 GVLVTIDF-NIKNKLSDKK-LQDLLSHFNKYRLRNEDFDRPDLLGTAYEYLIKMFADSAG 177 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV L LL P +YDPT G+GG L N + G Sbjct: 178 KKGGEFYTPSEVVQLLVELL----------KPHAGMRIYDPTSGSGGMLVQTRNQLEKQG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + L +GQE+ T A+C M + + + +I++G TL Sbjct: 228 ENA---ANLSLYGQEMNLNTWAICKMNMFLHGV-------QNADIRKGDTLRDPQHTEGG 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F ++NPPF K + E N GRF G P G + F+ H+ Sbjct: 278 ELMSFDRVIANPPFSLK-----KWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N G +V+ LF G S E IR+ +LE+DL+EA+V LP+ LF+ T I L Sbjct: 331 --TNSEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVVGLPSGLFYGTGIPACL 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I++ K R+GKV IN + GK + + + +I+ + + + Sbjct: 386 LIINKNKPSARKGKVLFINGELEFAE----GKNQNKLRPEDIAKIVTTFENHSFESQCDI 441 >gi|237653815|ref|YP_002890129.1| N-6 DNA methylase [Thauera sp. MZ1T] gi|237625062|gb|ACR01752.1| N-6 DNA methylase [Thauera sp. MZ1T] Length = 498 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 127/534 (23%), Positives = 216/534 (40%), Gaps = 59/534 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + A L + +W++A L G DF I P +R+ + E+Y Sbjct: 1 MHQPSITLAQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQ 53 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114 D + + F + + + + N L+ I + + + Sbjct: 54 EIVDETGDEQLAWFPESHRFQIPEDCHWNDVRAKAANVGAALQHAMREIEKANPDTLYGV 113 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F D +S+ RL A LL + ++FS + L V ++ + YE+LI++F ++ A Sbjct: 114 FGDAQWSNK-ERLSDA-LLKDLIEHFSKLPLGNGNVTSDLLGDAYEYLIKKFADATNKKA 171 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VV L +L P T+YDP CGTGG L A+ HV + Sbjct: 172 GEFYTPRSVVRLMIDML----------DPREGETIYDPACGTGGMLLAAVQHVQEMHGDV 221 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290 K +GQE T ++ + + +E I +G TL F Sbjct: 222 K-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFKIVRGDTLRNPAFFDGDRLS 273 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F ++NPPF + E N GR GLP S G ++ H+ + Sbjct: 274 AFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---A 325 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 +G GR A+VL LF S E IR+ LL+ DLIEA++ L +LF+ T +A + +L Sbjct: 326 DGTGRMAVVLPQGALFR---KSAEGGIRQKLLKLDLIEAVIGLAPNLFYGTGLAACILVL 382 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-- 468 +K RR KV + +A+ L+ G+ + + + QIL Y ++ + + + Sbjct: 383 RKKKPAARRRKVLVADASRLFRR----GRAQNYLEAEHAAQILGWYRDFQDVQDAVRVVA 438 Query: 469 -DYRTFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 D + + R PL+ +A + + + + + + Sbjct: 439 LDEIEAEDWTLNISRYVLPPLQEDIPPLPEAIAAFKDALQRCREAEERLAQVMA 492 >gi|328951823|ref|YP_004369157.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfobacca acetoxidans DSM 11109] gi|328452147|gb|AEB07976.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfobacca acetoxidans DSM 11109] Length = 499 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 117/506 (23%), Positives = 201/506 (39%), Gaps = 52/506 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M T S + L + +W+ A L G DF + P +RL + ++ Sbjct: 1 MDNSTLSLSQLESHLWEAANILRGPVDAADFKTYVFPLLFFKRLSDVYDEEYQEALKE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114 + D E Y F + + +TN L++ I + + I Sbjct: 59 ----AGGDEEYARFPQNYRFQIPEDCHWRDVRAVATNVGQALQTAMRCIETANPETLYGI 114 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F D +++ RL A LL + ++FS I L ++ YE+LI++F ++ A Sbjct: 115 FGDAQWTNK-DRLSDA-LLRDLIEHFSKIPLGNAVAQADILGQSYEYLIKKFADLTNKKA 172 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VV L +L P ++YDP CGTGG L +A++HV + Sbjct: 173 GEFYTPRAVVRLMVNIL----------DPQEGESIYDPACGTGGMLLEAIHHVREHHGDV 222 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 + GQE T A+ +++ I + TL + F Sbjct: 223 RT-LWGRLFGQEKNLTTSAIARMNLILHG-------AADFKIIRADTLRQPAFFSGDNLA 274 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + ++NPPF + ++ GR G+P G ++ H+ + Sbjct: 275 TYDCVIANPPFSLEKWGEEVWTSD-----PFGRNFAGMPPAKSGDFAWVQHMIKSMAPKT 329 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GR A+VL LF A E +IR+ LL DL+EA++ L +LF+ T +A + I Sbjct: 330 ---GRMAVVLPHGVLFRMGA---EGKIRQKLLNMDLLEAVIGLGPNLFYGTGLAACILIF 383 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469 RK E R KV +I+A+ + +G+ + + D I Y + + +R++ Sbjct: 384 RLRKPPEHRNKVLIIDASQEF----KKGRAQNELLPDHVAHIYTWYRDYADVEGIARVVT 439 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGL 495 + P + +++ L Sbjct: 440 LEEIATNDYILNIPRYVEPRVEQEVL 465 >gi|186685409|ref|YP_001868605.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] gi|186467861|gb|ACC83662.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] Length = 684 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 172/720 (23%), Positives = 306/720 (42%), Gaps = 103/720 (14%) Query: 10 SLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + IW A+ L G K +++ ++PF L +E L ++ + + I Sbjct: 8 QYESNIWATADLLRGCGIKESEWPSYMMPFFALVMIESRLVRMFDELKAEIGEAALAEIA 67 Query: 69 LESFV-----KVAGYSFYNTSEY-SLSTLGSTNT--RNNLESYIASFSDNAKAIF----- 115 E K GY+ Y + +L + + + E+Y+ F K + Sbjct: 68 PEDLTGLIEDKGQGYNVYIFEKNQTLKDICKNDKSFDVDFEAYLRGFDGETKDLLGVEAT 127 Query: 116 --EDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 E F D I +L+ +L K +S I+L P + ++ + EH+ RR+ ++ Sbjct: 128 EGEKFLDIKGVITKLKAKKVLLGYTKEWSSIDLKP--FDNSAITTLEEHIKRRWADISAD 185 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TP DV+ L ++ + + +YD TCG G L + + Sbjct: 186 TAGEQYTPDDVIGLIAEIIASKIEES-----DKLLKIYDCTCGGGNLLFGVEDRI----- 235 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 H + + GQ+ +A+ + R + I+ G+TL+ D F F Sbjct: 236 HQRFKRLTQTFGQDWNDALYALAK---------IESRFRVDSKIEHGNTLTDDKFYNDEF 286 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 ++NPP+G KW + + +N + RF LP ISDG +LF+ HL +KL N Sbjct: 287 DVVIANPPYGVKWNGYQKDI----ENDKTQRFKY-LPSISDGQLLFMQHLISKL----NA 337 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G +V + S LF+G AGS ES IR+W+L++D +EA++ LPTD FF T I TYLW+L+ Sbjct: 338 NGMGVVVHNGSTLFSGDAGSAESNIRKWMLDSDFVEAVIQLPTDEFFNTGIYTYLWVLNK 397 Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K + R KV LINA++ + ++ G KR+ +++ R +I++ + ++R+ D Sbjct: 398 HKLPQCRDKVMLINASEKFKPLKKSKGSKRKEVDEVSRLEIVETLTRFVDNDYARVFDKE 457 Query: 472 TFGYRRIKVL---------------RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 F + + ++ + ++S L L E +T ++ + Sbjct: 458 FFYFNKQAIMLTNVDEQGKSFASRLKEGKISLKLSPLKLDNGERTLTEFTITNCDSQRFG 517 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR---ADP 573 +++ Q I P+ + + ++ + K L + G+++ Sbjct: 518 SLVEAFEQDIKPFVSSLDYKEQPLTVTTEKAL-YRFDADRETLIKEVLGKQEEALGCGKI 576 Query: 574 VTD---VNG------------EWIPDTNLTEYENVPY-------LESIQDYFVREVSPHV 611 V G E PD +YE +P+ E+I+ + + Sbjct: 577 VVKAAFKKGTKTQPEKIEITVELTPDYQ-KDYEIIPFHRDEVANQEAIEAFMAK------ 629 Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 YI K F ++ VG EINFN+ FY+ + R +Q I E+ +E ++ L E + Sbjct: 630 ---YITKPFEYLEN----VVGVEINFNKVFYKPEKLRSVQKILGEITAIEKELKGLEEGL 682 >gi|313107803|ref|ZP_07793977.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042 [Pseudomonas aeruginosa 39016] gi|310880479|gb|EFQ39073.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042 [Pseudomonas aeruginosa 39016] Length = 1005 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 125/572 (21%), Positives = 219/572 (38%), Gaps = 48/572 (8%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + + L + +W++A L G DF I P +R+ + + ++ Sbjct: 1 MSDQQITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEFQEIVDESG 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + ++ Y + +G+ + + + D +F D + Sbjct: 61 DEQLAWFPESHRFQIPDYCHWEQVREKSINVGA-ALQWAMREIERANPDTLYGVFGDAQW 119 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 S+ RL LL + ++FS + L V ++ + YE+LI++F ++ A +F TP Sbjct: 120 SNK-DRLSDP-LLKDLIEHFSKLPLGNKNVSSDLLGDAYEYLIKKFADATNKKAGEFYTP 177 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VV L +L P ++YDP CGTGG L A+ HV + K Sbjct: 178 RSVVRLMIDML----------DPKEGESIYDPACGTGGMLLAAVQHVKELHGDVK-RLWG 226 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296 +GQE T ++ + + +E I++G TL F F + Sbjct: 227 KLYGQEKNLTTSSIARMNLFLHGIE-------DFKIERGDTLRNPAFFDGDRLATFDCVI 279 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF + E N GR GLP S G ++ H+ + GR Sbjct: 280 ANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMAAVT---GRM 331 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL LF E IR+ LLE DL+EA++ L +LF+ T +A + +L N K Sbjct: 332 AVVLPQGALFRKGV---EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACILVLRNCKPA 388 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML---DYRTF 473 + KV + +A+ L+ G+ + + +IL Y + + + + D Sbjct: 389 QFEKKVLIADASRLFRR----GRAQNFLEPKHAAEILGWYRGFTDVQDAVRVVSLDEIKA 444 Query: 474 GYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 + + R PL+ +A + + + + + + M I+P Sbjct: 445 EDWTLNISRYVLPPLQEDIPPLPEAIATFKDALNRCREAEERLAQVMTAG-GMAAMIHPS 503 Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561 ES A L+ FI Sbjct: 504 KRITQQELESYLWGAAVLLRGLIDAGDYKQFI 535 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 122/545 (22%), Positives = 218/545 (40%), Gaps = 61/545 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +++W A L G D+ + I P +R+ + A A SN Sbjct: 507 TQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQA------ALVDSN 560 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLE---SYIASFSDNAKA-IFEDFDF 120 DL + F + + T N ++ I S + + IF D + Sbjct: 561 GDLSYAQFAENHRFQIPEAAHWNDVRQTPRNVGAAIQRAMRAIESANPDMLDGIFGDAPW 620 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL L + ++FS L VP+ + N YE+LI++F + A +F T Sbjct: 621 TNR-DRLPD-ETLKNLIEHFSTKTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 678 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T LL +P + ++YDPTCGTGG L A++ V G ++ Sbjct: 679 RTVVHLMTQLL----------APQVGESIYDPTCGTGGMLISALDEVKRSGGEYRTLK-- 726 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCL 296 +GQE T ++ + + +E I +G TL+ +F L Sbjct: 727 -LYGQERNLITSSIARMNLFLHGVEDFE-------IVRGDTLADPKHIEDDRLRQFDVIL 778 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K + + + GR G P F H+ L + GR Sbjct: 779 ANPPYSIKQWN-----REAWSSDKWGRNSLGTPPQGRADYAFQQHILTSL----SAKGRC 829 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A++ LF E +R ++E D +EA++ L +LF+ + + + + I + +KT Sbjct: 830 AVLWPHGVLFRNE----EQAMRAQMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRQKTS 885 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 +R GKV I+A + T R + + + +++IL Y + + F+++ G Sbjct: 886 DRHGKVIFIDAVNEVTRERA----QSFLKTEHQQRILSAYQTFADVPGFAKVATLAEIGA 941 Query: 476 RRIKVLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + PL + + + +W + ++FW + +++ + Sbjct: 942 NAGNLSIPLYVKRVAAASASDSNGEAISLRTSWEQWQNDGRAFWQQM-DALVETLDSISK 1000 Query: 532 AESFV 536 AE V Sbjct: 1001 AEDAV 1005 >gi|114778593|ref|ZP_01453420.1| Type I restriction-modification system M subunit [Mariprofundus ferrooxydans PV-1] gi|114551182|gb|EAU53742.1| Type I restriction-modification system M subunit [Mariprofundus ferrooxydans PV-1] Length = 572 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 197/471 (41%), Gaps = 51/471 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +F+W+ A+ L G+ ++F I L+RL A E + V YL+ G + Sbjct: 5 TLQQLESFLWETADILRGNMDASEFKDYIFGMLFLKRLSDAFEEEQEKVVAHYLSVGKTQ 64 Query: 67 IDLESF---VKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDF 118 E +F+ S L + L I + + + Sbjct: 65 AQAEELAQDEDEYDNTFFVPERARWSYLKDLHHDIGAELNKATEAIEEANTTLEGVLVSI 124 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDF 177 DF + +L L + ++S L + + YE+LI+ F + +F Sbjct: 125 DF-NIKNKLSDKK-LRDLISHYSKYRLRNEDFEKPDLLGTAYEYLIKMFADSAGKKGGEF 182 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +VV L +LL P +YDPT G+GG L N++A G + P Sbjct: 183 YTPSEVVRLLVSLL----------KPEAGMRVYDPTVGSGGMLIQTRNYLASHG---ENP 229 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293 L +GQE+ T A+C M + + + +I++G TL F Sbjct: 230 RDLALYGQEMNLNTWAICKMNMFLHGV-------FNADIRKGDTLRDPAHIQHGELMHFD 282 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF K + E N GRF G P G + F+ H+ L N Sbjct: 283 RVIANPPFSLK-----KWGKDEADNDAYGRFPYGTPPKDAGDLAFVQHMIASL----NAE 333 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+ +V+ LF G S E IR+ +L++DL+EA++ LP+ LF+ T I L I++ + Sbjct: 334 GKMGVVMPHGVLFRG---SSEKAIRKGILQDDLLEAVIGLPSGLFYGTGIPACLLIINKQ 390 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K +ER+GKV INA + GK + + D+ +I + + E K Sbjct: 391 KADERKGKVLFINAELEYEE----GKNQNKLRDEDIAKITATFENYEEIKR 437 >gi|30250441|ref|NP_842511.1| type I restriction-modification system methylation subunit [Nitrosomonas europaea ATCC 19718] gi|30139282|emb|CAD86434.1| type I restriction-modification system methylation subunit [Nitrosomonas europaea ATCC 19718] Length = 448 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 114/479 (23%), Positives = 196/479 (40%), Gaps = 52/479 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + + L + +W++A L G DF I P +R+ + E+Y Sbjct: 1 MSDQHITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQ 53 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114 D + + F + + + ++N L+ I + + + Sbjct: 54 EIVDETGDEQLAWFPESHRFQIPEDCHWNDVRTKASNVGTALQRAMREIEKANPDTLYGV 113 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F D +S+ RL A LL + ++FS + V ++ + YE+LI++F ++ A Sbjct: 114 FGDAQWSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVSSDLLGDAYEYLIKKFADATNKKA 171 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VV L +L P T+YDP CGTGG L A+ HV + Sbjct: 172 GEFYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEQHGDV 221 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 K +GQE T ++ + + +E + +G TL F Sbjct: 222 K-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVVRGDTLRNPAFFEVDRLA 273 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F ++NPPF + E N GR GLP S G ++ H+ + Sbjct: 274 TFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADVI 328 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GR A+VL LF E IR+ LLE DL+EA++ L +LF+ T +A + + Sbjct: 329 ---GRMAVVLPQGALFRKGV---EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACIMVC 382 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + RK + + KV + +A+ L+ G+ + + + +IL Y + + + Sbjct: 383 AKRKPAKHKNKVLIADASRLFRR----GRAQNHLEPEHATEILSWYRGFADVQDAVPWS 437 >gi|86145620|ref|ZP_01063950.1| Type I restriction-modification system M subunit [Vibrio sp. MED222] gi|85836591|gb|EAQ54717.1| Type I restriction-modification system M subunit [Vibrio sp. MED222] Length = 583 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 194/471 (41%), Gaps = 52/471 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT S L +F+W+ A+ L G+ ++F I L+R+ A E + V YL Sbjct: 1 MTNK-LSLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRMSDAFEEEQEKVIAYYL 59 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112 G + E +FY S L N +L I + + Sbjct: 60 GKGKTQEQAEELANDEDEYDDTFYMPESSRWSALKDLKHNIGESLNKATEAIEEHNSALE 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVS 171 + DF + +L A L + +FS L + M YE+LI+ F Sbjct: 120 GVLVTIDF-NIKNKLTDAK-LRDLLSHFSQHRLRNEDFERPDMLGTAYEYLIKMFADSAG 177 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV L ALL P +YDPT G+GG L NH+A G Sbjct: 178 KKGGEFYTPSEVVQLLVALL----------KPHAGMRIYDPTTGSGGMLVQTRNHLAKNG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + L GQE+ T A+C M + + S +I++G TL + Sbjct: 228 ENA---SNLSLFGQEMNLNTWAICKMNMFLHGV-------QSADIRKGDTLREPKHTEGG 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F ++NPPF K + E + GRF G P G + F+ H+ Sbjct: 278 ELMSFDRVIANPPFSLK-----KWGKDECDSDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N G +V+ LF G S E IR+ +LE+DL+EA++ LP+ LF+ T I L Sbjct: 331 --TNNEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTGIPACL 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 I++ K+ R+GKV IN+ + GK + + + +I++ + + Sbjct: 386 LIINKNKSAARKGKVLFINSELEFEE----GKNQNKLREQDITKIVETFEN 432 >gi|264677646|ref|YP_003277552.1| type I restriction-modification system subunit M [Comamonas testosteroni CNB-2] gi|262208158|gb|ACY32256.1| type I restriction-modification system, M subunit, putative [Comamonas testosteroni CNB-2] Length = 448 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 142/448 (31%), Positives = 228/448 (50%), Gaps = 46/448 (10%) Query: 132 LLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +L+ + + F E++ + M ++E LIR+F E +E A + Sbjct: 1 MLHDVIEKFVSDEINLSPNDRKGPDGRTQPGLSNLGMGYVFEELIRKFNEENNEEAGEHF 60 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L T L+ P T+YDP CG+GG LT++ + + D K Sbjct: 61 TPREVIKLMTNLVFIPVKDQL----PYPLTIYDPACGSGGMLTESQDFITDPEGEIKAKV 116 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G+E+ PET+A+C + M+I+ + +NI+ GSTL+ D F+G RF + L+N Sbjct: 117 GVFLYGKEVNPETYAICKSDMMIKGNDP-------ENIKFGSTLATDDFSGTRFDFMLTN 169 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFG--------------PGLPKISDGSMLFLMHLAN 344 PP+GK W+ D+ ++ E K+ RF P +P+ SDG +LF+M + Sbjct: 170 PPYGKSWKSDQKSIV-EGKDVIDHRFQVNLSDYTEEDFDFYPAIPRSSDGQLLFMMEMVG 228 Query: 345 KLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 K++ G R A V + S LF G AGSGES IRR ++END +EAI+ LP +LF+ T Sbjct: 229 KMKRRNDSPMGSRIASVHNGSALFTGDAGSGESNIRRHIIENDYLEAIIQLPNNLFYNTG 288 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSREN 461 I TY+W+LSN K ++ +GK+QLI+A++L+ +R N G+K D+ QI +Y+ N Sbjct: 289 ITTYVWVLSNNKADQCKGKMQLIDASNLYQKLRKNLGEKNCEFTDEHIHQITQLYLEMPN 348 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---- 517 S++ + R FGY ++ + RPLR++ +A L + + + D Sbjct: 349 DGISKVFNNRDFGYYKVTIERPLRLAAQFSPERIATLRFTPGMQDIMEWVYDKYGDEVYT 408 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545 LK + I + E E Sbjct: 409 SLKAHAEAIEAHLEREEITLSPKNRKEL 436 >gi|88809187|ref|ZP_01124696.1| Type I restriction-modification system M subunit [Synechococcus sp. WH 7805] gi|88787129|gb|EAR18287.1| Type I restriction-modification system M subunit [Synechococcus sp. WH 7805] Length = 627 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 132/480 (27%), Positives = 205/480 (42%), Gaps = 52/480 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + L +F+WK+A+ L G ++F I L+RL A E R V YL G S Sbjct: 60 TLSQLESFLWKSADILRGSMDASEFKDYIFGMLFLKRLSDAFEEAREGVIAYYLGKGKSQ 119 Query: 67 IDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDF 118 + E +FY + L + L I + + + Sbjct: 120 SEAEDLADDQDEYDKTFYVPEKARWQNLKDLKHDIGAELNKATEAIEEHNRTLEGVLVSI 179 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDF 177 DF + +L L + ++S L + + YE+LI+ F + +F Sbjct: 180 DF-NIKNKLNDRK-LRDLLSHYSTFRLRNEDFERDDLLGAAYEYLIKMFADSAGKKGGEF 237 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +VV L ALL P +YDPTCG+GG L N++A G + P Sbjct: 238 YTPNEVVKLLVALL----------KPHAGMRVYDPTCGSGGMLIQTRNYLASHG---ENP 284 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293 L GQE+ T A+C M + + +S +I++G TL RF Sbjct: 285 ANLQLFGQEMNLSTWAICKLNMFLHGV-------ISADIRKGDTLGDPQHVENGEINRFD 337 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF K +N GR+ G+P G + F+ H+ + L Sbjct: 338 RVIANPPFSLKNWG-----RDLAENDGYGRYRYGVPPKDAGDLAFVQHMISSLNQE---- 388 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G +V+ LF G E EIR+ +LE+DLIEA++ LP+ LF+ T I L IL+ Sbjct: 389 GVMGVVVPHGVLFRGGQ---EGEIRKGILEDDLIEAVIGLPSGLFYGTGIPAALLILNKT 445 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 K+ ER+GKV INA + GK + I+ D+ +++ + S + K FSR++ Sbjct: 446 KSVERKGKVLFINAELDYQE----GKNQNILRDEDIEKVVGCFDSYNDIKRFSRVVPIEE 501 >gi|77920517|ref|YP_358332.1| type I restriction-modification system, M subunit [Pelobacter carbinolicus DSM 2380] gi|77546600|gb|ABA90162.1| type I restriction-modification system, M subunit [Pelobacter carbinolicus DSM 2380] Length = 504 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 124/532 (23%), Positives = 219/532 (41%), Gaps = 57/532 (10%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 +SL+ +W+ A L G DF I P +RL + +A E+ S+ D Sbjct: 14 SSLSGHLWQAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYAAALEE------SDGD 67 Query: 69 LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAIFEDFDFSS 122 +E + F S N + L+ I + + IF D +++ Sbjct: 68 VEFAQFPENHRFQVPENCHWKDARAKSANIGHALQKAMRCIEQANPDTLHGIFGDAQWTN 127 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 RL A LL + ++FS + L + ++ YE+LI++F ++ A +F TPR Sbjct: 128 K-ERLSDA-LLKDLLEHFSSLNLGNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRS 185 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV L +L +P T+YDP CGTGG L +A++HV + G + + Sbjct: 186 VVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEHGGD-EHLMLGKL 234 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSN 298 +GQE T ++ + + E +I++G TL F + F ++N Sbjct: 235 YGQEKNLTTSSIARMNLFLHGAE-------DFHIERGDTLRLPAFYSGDSLATFDCVIAN 287 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF K + N GR GLP G ++ H+ + GR A+ Sbjct: 288 PPFSLK-----KWGDDAWTNDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARKTGRMAV 339 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VL LF S E +IR LLE D++EA++ L ++F+ T +A + + + K ++ Sbjct: 340 VLPHGVLFR---MSKEGKIRHKLLEMDILEAVIGLGKNIFYGTGLAPCVLVFRDSKPKDH 396 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRR 477 R KV I+A+ + G+ + + + I Y ++ + R++ Sbjct: 397 RQKVLFIDASKEF----KTGRAQNELLPEHVDNIHRWYEDYQDVEGICRVVTLDEIREND 452 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILKPMMQQIY 527 + P + ++++ + D L Q+ D LK ++++ Sbjct: 453 FNLTIPRYVEPVIEEESIT---IDRAIANLKEALQAACAAEDRLKALLEKEG 501 >gi|295696354|ref|YP_003589592.1| type I restriction-modification system, M subunit [Bacillus tusciae DSM 2912] gi|295411956|gb|ADG06448.1| type I restriction-modification system, M subunit [Bacillus tusciae DSM 2912] Length = 493 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 115/533 (21%), Positives = 216/533 (40%), Gaps = 57/533 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +W++A L G +D+ I L+RL + +Y G Sbjct: 5 TLQQLESHLWESANILRGHIDSSDYKHYIFGMLFLKRLNDVFIEKAKEIEREYGQDYGWY 64 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAKAIFEDFDFS 121 E + F+ E S L + + + + + + + DF+ Sbjct: 65 DRDE-------HQFFVPEEARWSYLYSKTQDIGTAINHAFELLEDENPQLQGVLRSIDFN 117 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 RL A + ++ ++FS I+L + + ++ YE+LI+ F + + +F TP Sbjct: 118 DK-ERLPDATI-SRLMQHFSEIDLSNANLSEPDILGRAYEYLIKMFADDAGKKGGEFYTP 175 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 VV L L+ P + DPT G+GG L +++++ G + P + Sbjct: 176 SKVVELIVKLI----------KPQEGMRICDPTAGSGGMLIQSVDYIKAAGGN---PQNV 222 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 HGQE T A+C +L+ L I++G TL + + Sbjct: 223 TLHGQEKNLNTWAICKMNLLLHGL-------SDHRIEKGDTLRDPKLVQDGELILYDRVI 275 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF K +E + GRF GLP G + F+ H+ L G+A Sbjct: 276 ANPPFSLKGWG-----REEAEADPYGRFRFGLPPKDKGDLAFVQHMIATLNHE----GKA 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +V+ LF G A E +IR+ +L DL+EA++ LP +LF+ T I + + S K Sbjct: 327 GVVMPHGVLFRGGA---EEQIRKGILGEDLLEAVIGLPANLFYGTGIPACILMFSRSKEP 383 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475 +RGKV +N + + GK + + D+ R+I+ Y + ++ K+ R++D Sbjct: 384 HKRGKVFFLNGANDYQE----GKNQNFLRDEDIRKIVSAYDTWQDVDKYCRVVDLDEIRK 439 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + + ++ + + I + + +++ ++++ Sbjct: 440 NEYNLNIARYIDSTDEEEQID-VAEAIAELRRLEEERRQIEEVMNGYLRELGY 491 >gi|262196002|ref|YP_003267211.1| type I restriction-modification system, M subunit [Haliangium ochraceum DSM 14365] gi|262079349|gb|ACY15318.1| type I restriction-modification system, M subunit [Haliangium ochraceum DSM 14365] Length = 633 Score = 366 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 122/534 (22%), Positives = 208/534 (38%), Gaps = 56/534 (10%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + A L ++W A+ L G +D+ I L+RL E + + L Sbjct: 137 QLTTAQLERYLWAAADILRGQIDSSDYKNYIFGLLFLKRLSDVFEEEAEKLTAEGLPAAV 196 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAKAIFEDFD 119 + D + + F+ S + +T L + + + + E D Sbjct: 197 AWNDPDE------HQFFVPERARWSEIAKVATGIGEALNVACAALEEANSGLDGVLEGID 250 Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAE 175 F+ + +L ++ ++F + L + + M YE+LI +F + + Sbjct: 251 FNDERRLGNTKNRDAVLARLVQHFGQLSLKNADLSEPDMLGRAYEYLIEKFADDAGKKGG 310 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TPR VV L LL +P + DPTCG+GG L + ++V G + Sbjct: 311 EFYTPRKVVQLIVELL----------APTAGMRISDPTCGSGGMLIECAHYVERQGGN-- 358 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----R 291 P L HGQE T A+C ML+ L S I++G T+ Sbjct: 359 -PRNLTLHGQEKNLGTWAICKMNMLLHGL-------PSARIEKGDTIRDPRLLDNGALLV 410 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + ++NPPF + A H GRF GLP + G + FL H+ L N Sbjct: 411 YDRVIANPPFSLDEWGVEVAEGDGH-----GRFRFGLPPKTKGDLAFLQHMVATL----N 461 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGR +V+ LF G S E IR LL DL EA++ L +LF+ T I + +LS Sbjct: 462 EGGRLGVVMPHGVLFRG---SSEGRIRSKLLAEDLFEAVIGLAPNLFYGTGIPAAVLVLS 518 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470 K R+GKV ++A+ + + G + + D +I + + + F+R++ Sbjct: 519 RDKARARKGKVLFVDASSEFEA----GSAQNYLRDVHVTKIARAFHEYRDVERFARVVPL 574 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + ++ + A R+L + + + + Sbjct: 575 AEIEQNEGNLNISRYVDTSQEEERIDVAAAVARLRELEAARDEAEATMHRFLEE 628 >gi|145631521|ref|ZP_01787289.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae R3021] gi|144982866|gb|EDJ90383.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae R3021] Length = 483 Score = 366 bits (939), Expect = 8e-99, Method: Composition-based stats. Identities = 133/490 (27%), Positives = 201/490 (41%), Gaps = 121/490 (24%) Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPKISDGSMLFLMH 341 LSNPP+GK W KD+ ++ ++ RF P+ SDG +LFLM Sbjct: 1 MLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDATPRSSDGQLLFLME 59 Query: 342 LANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + NK++ P N G R A V + S LF G AGSGES IRR ++E DL+EAIV LP +LF+ Sbjct: 60 MVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLLEAIVQLPNNLFY 119 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVS 458 T I TY+W+LSN K E R+GKVQLI+A L+ +R N G K + +I Y+ Sbjct: 120 NTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFAPEHIAEITQNYLD 179 Query: 459 REN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW-- 504 G S++ D + FGY ++ + RP R S +A L D Sbjct: 180 FTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAENIAPLRFDKALFE 239 Query: 505 ----------------------------------------RKLSPLHQSFWLDILK---- 520 K L W Sbjct: 240 PMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAALFQT 299 Query: 521 --PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT--- 575 +++ + + + K K+ S + A NA D A V Sbjct: 300 ASTLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVSWYDENAAKVIAKT 359 Query: 576 ------------------------------DVNGE---WIPDTNLTEYENVPYLESIQDY 602 GE + ++L + E++P ++I DY Sbjct: 360 LKLKPNELDALCRRYQCQADELADFGYYATGKAGEYLQYETSSDLRDSESIPLKQNIHDY 419 Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662 F EV PH+ +A+++ E ++GYEI+FN++FY+++P R L D+ ++ +E Sbjct: 420 FKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRSLADVAQDILALEK 471 Query: 663 QIATLLEEMA 672 Q L+ E+ Sbjct: 472 QTDGLISEIL 481 >gi|189423917|ref|YP_001951094.1| N-6 DNA methylase [Geobacter lovleyi SZ] gi|189420176|gb|ACD94574.1| N-6 DNA methylase [Geobacter lovleyi SZ] Length = 496 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 129/533 (24%), Positives = 210/533 (39%), Gaps = 59/533 (11%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + L N +W++A L G DF I P +R+ + + E+ Sbjct: 6 LSQLENHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIAEEMG------- 58 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDN-AKAIFEDFDFS 121 D E + + F + T N N L+ I + + A+F D ++ Sbjct: 59 DPELAMFPESHRFQVPEGCHWRDIRETPVNVGNALQRALREIEKANPDTLYAVFGDAQWT 118 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL A LL + ++FS + L V V+ + YE+LI++F ++ A +F TPR Sbjct: 119 NK-DRLTDA-LLKDLIEHFSRLPLGNRNVASDVLGDAYEYLIKKFADATNKKAGEFYTPR 176 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L +L P ++YDP CGTGG L A+ HV + K Sbjct: 177 SVVRLMVDML----------DPKEGDSIYDPACGTGGMLLAALQHVHELHGDTK-LLWGK 225 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 GQE T A+ + + +E I +G TL F F ++ Sbjct: 226 LFGQEKNLTTSAIARMNLFLHGIE-------DFQIVRGDTLRNPAFFEGDRLATFDCVIA 278 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF + ++ + N GR GLP S G ++ H+ + GR A Sbjct: 279 NPPFSLEKWGEEVWL-----NDPFGRNFAGLPPSSSGDFAWVQHMVKSMAEVT---GRMA 330 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL LF E EIRR LLE DLIE ++ L +LF+ T +A + +L RK E Sbjct: 331 VVLPQGALFRKGV---EGEIRRKLLEMDLIEGVIGLAPNLFYGTGLAACILLLRKRKPAE 387 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTFGYR 476 R+ KV + +A+ L+ G+ + + + +IL Y + + R++ Sbjct: 388 RKRKVMIADASSLFRR----GRAQNYLEPEHGAEILGWYQAFIDVQDRVRIVSTDEIKAE 443 Query: 477 RIK------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 VL PL +A ++ + + + + + Sbjct: 444 DWTLNISRYVLPPLNDDIPPLPQAIAEFKSALERCREAETRLEQLMTDGGWLQ 496 >gi|300118615|ref|ZP_07056353.1| type I restriction modification system, methyltransferase subunit [Bacillus cereus SJ1] gi|298724004|gb|EFI64708.1| type I restriction modification system, methyltransferase subunit [Bacillus cereus SJ1] Length = 493 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 113/501 (22%), Positives = 211/501 (42%), Gaps = 56/501 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +W++A + G +D+ I L+RL T + E+ G Sbjct: 5 TLQQLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVETAKRIEEEEQDDYGWY 64 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDN---AKAIFEDFDFS 121 E + F+ + + + + + + + + + DF+ Sbjct: 65 DRDE-------HQFFVPEGVRWEDIRSKTQDIGDAINKAFEKLEEENISLQGVLANIDFN 117 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180 +L + LL ++ ++FS I+L ++ + M YE+LI++F + + +F TP Sbjct: 118 DK-EKLPDS-LLLQLIQHFSKIDLSNASLSEPDMLGRAYEYLIKQFADDAGKKGGEFYTP 175 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +VV L L+ P + DPT G+GG L +++++ P L Sbjct: 176 SEVVELIVKLI----------KPEEGMRVCDPTAGSGGMLIQSVDYIK---GKGGNPRNL 222 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCL 296 V HGQE T A+C +L+ L I++G T+ + + + + Sbjct: 223 VLHGQERNLNTWAICKMNLLLHGL-------SDHRIEKGDTIREPKLLEEGELILYDRVI 275 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF K +E ++ E GRF GLP + G F+ H+ L G+A Sbjct: 276 ANPPFSLKNWG-----REEAESDEYGRFRFGLPPKTAGDYGFIQHMIATLNHE----GKA 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +V+ LF G A E IR+ L+E DLIEA++ LP++LF+ T I + IL+ K+E Sbjct: 327 GVVMPHGVLFRGGA---EGAIRKGLIEEDLIEAVIGLPSNLFYGTGIPACILILNRNKSE 383 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 ER+ K+ ++ + + GK + + D ++++ Y E + + R + G Sbjct: 384 ERKNKIFFLDGSQDYQE----GKNQNTLRDKDIEKVVEAYDKNEEEEKYCRPVGIEEIGE 439 Query: 476 RRIKVLRPLRMSFILDKTGLA 496 + + ++ + Sbjct: 440 NDYNLNIARYIDTTEEEEKID 460 >gi|254190414|ref|ZP_04896922.1| type I restriction-modification system methylation subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938090|gb|EDO93760.1| type I restriction-modification system methylation subunit [Burkholderia pseudomallei Pasteur 52237] Length = 500 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 124/523 (23%), Positives = 210/523 (40%), Gaps = 59/523 (11%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 T + L + +W++A L G DF I P +R+ + E+Y Sbjct: 7 TVTLGQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQEIVD 59 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAIFEDF 118 D + + F + + + ++N L+ I + + +F D Sbjct: 60 ETGDEQLAWFPESHRFQIPEDCHWNDVRSKASNVGAALQRAMREIEKANPDTLYGVFGDA 119 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +S+ RL A LL + ++FS + L D V V+ + YE+LI++F ++ A +F Sbjct: 120 QWSNK-ERLSDA-LLKDLIEHFSVLPLGNDNVNSDVLGDAYEYLIKKFADATNKKAGEFY 177 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR VV L +L P T+YDP CGTGG L A+ HV + K Sbjct: 178 TPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEMHGDVK-RL 226 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294 +GQE T ++ + + +E + +G TL F F Sbjct: 227 WGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVLRGDTLRNPAFFEGDWLATFDC 279 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF + E N GR GLP S G ++ H+ + G Sbjct: 280 VIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADLT---G 331 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R A+VL LF E IR+ LLE DL+EA++ L +LF+ T +A + +L RK Sbjct: 332 RMAVVLPQGALFRKGV---EGSIRQKLLELDLVEAVIGLGPNLFYGTGLAACILVLRKRK 388 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML---DYR 471 + + KV + +A+ L+ G+ + + + +IL Y + + + + D Sbjct: 389 PAKHKKKVLIADASRLFRR----GRAQNYLEPEHAAEILGWYRGFADVQDAVRVVSLDEI 444 Query: 472 TFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPL 510 + + R PL+ +A + +T + + Sbjct: 445 KAEDWTLNISRYVLPPLQEDVPPLPEAIAAFKDALTHCREAEE 487 >gi|220931289|ref|YP_002508197.1| type I restriction-modification system, M subunit [Halothermothrix orenii H 168] gi|219992599|gb|ACL69202.1| type I restriction-modification system, M subunit [Halothermothrix orenii H 168] Length = 495 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 117/516 (22%), Positives = 216/516 (41%), Gaps = 49/516 (9%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ T + L + +W++A L G +D+ I L+R+ + ++ + Sbjct: 1 MSQETLTLDKLESHLWESANILRGSIDSSDYKNYIFGMLFLKRISDVFDEECEKMKAEGK 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + D F + + S+ + ++ E + + + + DF Sbjct: 61 EAFIDDPDFHDFFVPKRARWEHISKVT--QDIGSHINKAFE-VLEEHNKMLEGVLAPIDF 117 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + RL +L ++ ++FS L D ++ YE+LIR+F + + +F T Sbjct: 118 NDK-ERLPDH-VLEELIQHFSKYSLKNRDLEDPDILGRAYEYLIRQFADDAGKKGGEFYT 175 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR VV L +L P ++YDP CG+GG L + H+ + G+ Sbjct: 176 PRQVVKLLVEIL----------DPRPGMSVYDPCCGSGGMLIYSAEHLIEEGNDI---SE 222 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295 + +GQE T A+C ML+ L I +G T+ F +F Sbjct: 223 ISLYGQERNLNTWAICKMNMLLHGL-------YDAKIAKGDTMRDPQFLDNGKLDQFDRV 275 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NP + + K E E GRF G P + +++ H+ N G+ Sbjct: 276 IANPMWNQSSWSKKYLQETE----PFGRFSYGFPPKNSADWVWIQHMLAS----ANKKGK 327 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 +VL + LF G E +IR+ +L++DLIEA++ALP++LF+ T+ + IL+ KT Sbjct: 328 IGVVLDNGVLFRG---RSEGKIRKKVLKHDLIEAVIALPSNLFYNTSSPGCILILNKDKT 384 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFG 474 ER+ KV I A + + EG + + + +IL+ Y + E+ + + R++D Sbjct: 385 VERKNKVIFIYAEEDY----KEGSNQNYLREKDIEKILNAYKNFEDIERYCRVVDMEEIE 440 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 + P ++ ++ L+ L Sbjct: 441 RNDYNLNVP---RYVDTTEPEEPIDVQEVIDNLNKL 473 >gi|229164778|ref|ZP_04292610.1| Type I restriction-modification system, M subunit [Bacillus cereus R309803] gi|228618681|gb|EEK75675.1| Type I restriction-modification system, M subunit [Bacillus cereus R309803] Length = 493 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 112/519 (21%), Positives = 211/519 (40%), Gaps = 58/519 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +W++A + G +D+ I L+RL T Sbjct: 5 TLQQLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVET-------AKRIEVEE 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 D + + F+ + E + + + + + + DF Sbjct: 58 QDDYGWYDRDEHQFFVPEGARWEDIHSKTQDIGDAINKAFEK-LEEENVSLQGVLANIDF 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 + +L LL ++ ++FS I+L + + M YE+LI++F + + +F T Sbjct: 117 NDK-EKLPD-NLLLQLIQHFSKIDLSNANLSEPDMLGRAYEYLIKQFADDSGKKGGEFYT 174 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P VV L L+ P + DPT G+GG L +++++ + G + P Sbjct: 175 PSKVVELIVKLI----------KPEEGMRVCDPTAGSGGMLIQSVDYIKEKGGN---PRN 221 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYC 295 LV HGQE T A+C +L+ L I++G T+ + + + Sbjct: 222 LVLHGQERNLNTWAICKMNLLLHGL-------SDHRIEKGDTIREPKLLEEGELVLYDRV 274 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K +E ++ + GRF GLP + G F+ H+ L G+ Sbjct: 275 IANPPFSLKNWG-----REEAESDQYGRFRFGLPPKTAGDYGFIQHMIATLNHE----GK 325 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A +V+ LF G A E IR+ ++E DLIEA++ LP++LF+ T I + +L+ K+ Sbjct: 326 AGVVMPHGVLFRGAA---EGTIRKRIIEEDLIEAVIGLPSNLFYGTGIPACILLLNRNKS 382 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFG 474 EER+ K+ ++ + + GK + + D +++ + Y E + + R + Sbjct: 383 EERKNKIFFLDGSQDYQE----GKNQNTLRDQDIKKVTEAYDKYEEIEKYCRPVSIEEVR 438 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + + ++ + A +KL + Sbjct: 439 ENDYNLNIARYIDITEEEEQIDVAAALAELQKLENARKE 477 >gi|302343962|ref|YP_003808491.1| type I restriction-modification system, M subunit [Desulfarculus baarsii DSM 2075] gi|301640575|gb|ADK85897.1| type I restriction-modification system, M subunit [Desulfarculus baarsii DSM 2075] Length = 505 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 122/535 (22%), Positives = 217/535 (40%), Gaps = 62/535 (11%) Query: 1 MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 M+ G+ +L+ +W+ A L G DF I P +RL + + Sbjct: 1 MSRKNGNNNSVDLDIGTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYA 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFS 108 E+ S+ D E + F + S N + L+ I + Sbjct: 61 VALEE------SDGDAEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQAN 114 Query: 109 DN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + IF D +++ RL A LL + ++FS + L + ++ YE+LI++F Sbjct: 115 PDTLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFA 172 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 ++ A +F TPR VV L +L +P T+YDP CGTGG L +A++HV Sbjct: 173 DLTNKKAGEFYTPRSVVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHV 222 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + G + + +GQE T ++ + + E +I++G TL F Sbjct: 223 KEHGGD-ENLMLGKLYGQEKNLTTSSIARMNLFLHGAE-------DFHIERGDTLRLPAF 274 Query: 288 ----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F ++NPPF + D + N GR GLP G ++ H+ Sbjct: 275 YSGDSLATFDCVIANPPFSLEKWGDDVWI-----NDPYGRNFAGLPPAKSGDFAWVQHMV 329 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + GR A+VL LF S E EIRR LLE D++EA++ + ++F+ T + Sbjct: 330 KSM---ARKTGRMAVVLPHGVLFR---MSKEGEIRRKLLEMDILEAVIGVGQNIFYGTGL 383 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 A + + + K + R KV I+A+ + G+ + + + +I Y ++ + Sbjct: 384 APCVLVFRDSKPKAHRQKVLFIDASKEF----KTGRAQNELLPEHVDKIHRWYEGYQDVE 439 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R++ + P + ++++ + D L Q+ + Sbjct: 440 GVCRVVTLDEIRENDFNLNIPRYVEPVIEEE---SMTIDQAIANLKESLQAAYAA 491 >gi|237816883|ref|ZP_04595875.1| type I restriction-modification system, M subunit [Brucella abortus str. 2308 A] gi|237787696|gb|EEP61912.1| type I restriction-modification system, M subunit [Brucella abortus str. 2308 A] Length = 523 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 16 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 74 PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 126 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 127 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 185 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV L LL +P + DPTCG+GG L HVA Sbjct: 186 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 235 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 236 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 288 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 289 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 347 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L G +V+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 348 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 400 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 401 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 456 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 457 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 515 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 516 LKEMGYVG 523 >gi|148558226|ref|YP_001257779.1| type I restriction-modification system, M subunit [Brucella ovis ATCC 25840] gi|148369511|gb|ABQ62383.1| type I restriction-modification system, M subunit [Brucella ovis ATCC 25840] Length = 523 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 125/548 (22%), Positives = 226/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 16 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 74 PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 126 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 127 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 185 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP+ VV L LL +P + DPTCG+GG L HVA Sbjct: 186 AGKKGGEFYTPQHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 235 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 236 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 288 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 289 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 347 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L G +V+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 348 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 400 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 401 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 456 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 457 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 515 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 516 LKEMGYVG 523 >gi|312879435|ref|ZP_07739235.1| type I restriction-modification system, M subunit [Aminomonas paucivorans DSM 12260] gi|310782726|gb|EFQ23124.1| type I restriction-modification system, M subunit [Aminomonas paucivorans DSM 12260] Length = 506 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 126/532 (23%), Positives = 220/532 (41%), Gaps = 53/532 (9%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 +L ++W A L G DF I P +RL + E +A S+ D+ Sbjct: 17 TLFGYLWDAANILRGSVDAADFKTYIFPLLFFKRLSDVYDE------EYAVALDESDGDV 70 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDN-AKAIFEDFDFSST 123 E + F + + +T + + L+ I + + IF D +++ Sbjct: 71 EFAQFAENHRFQVPEDCHWKDVRATIAHIGHALQKAMRCIEQANPDTLHGIFGDAQWTNK 130 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 RL LL + ++FS + L + ++ YE+LI++F ++ A +F TPR V Sbjct: 131 -DRLSDV-LLKDLIEHFSSLNLSNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRSV 188 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V L +L +P T+YDP CGTGG L +A++HV + G + + + Sbjct: 189 VALLVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEQGGD-ENLMLGKLY 237 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNP 299 GQE T A+ + + E ++Q+G TL F F ++NP Sbjct: 238 GQEKNLTTSAIARMNLFLHGAE-------DFHVQRGDTLRVPAFYSGDNLATFDCVIANP 290 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF K D + N GR GLP G ++ H+ + GR A+V Sbjct: 291 PFSLKKWGDDVWI-----NDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARRTGRMAVV 342 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 + LF S E EIRR LLE D++EA++ L ++F+ T +A + + +RK E R Sbjct: 343 VPQGVLFR---MSKEGEIRRKLLEMDILEAVIGLGQNIFYGTGLAPCVLVFRDRKPEAHR 399 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRI 478 KV I+A+ + G+ + + + +I Y ++ + R++ Sbjct: 400 WKVLFIDASKEF----KTGRAQNELLPEHVDRIHRWYEGYQDVEGICRVVTQGEIRENDF 455 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 + P + ++++ + + K S D LK ++++ G Sbjct: 456 NLNIPRYVEPVIEEESM-TIHQATANLKESLQAAYAAEDRLKALLEKEGLMG 506 >gi|225629306|ref|ZP_03787339.1| type I restriction-modification system, M subunit [Brucella ceti str. Cudo] gi|225615802|gb|EEH12851.1| type I restriction-modification system, M subunit [Brucella ceti str. Cudo] Length = 523 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 16 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 74 PENVAYSDPDE-------HEFFLVKRARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 126 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 127 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 185 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV L LL +P + DPTCG+GG L HVA Sbjct: 186 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 235 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 236 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 288 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 289 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 347 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L G +V+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 348 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 400 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 401 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 456 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 457 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 515 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 516 LKEMGYVG 523 >gi|17988796|ref|NP_541429.1| type I restriction-modification system methylation subunit [Brucella melitensis bv. 1 str. 16M] gi|297249369|ref|ZP_06933070.1| type I restriction-modification system, M subunit [Brucella abortus bv. 5 str. B3196] gi|17984614|gb|AAL53693.1| type i restriction-modification system methylation subunit [Brucella melitensis bv. 1 str. 16M] gi|297173238|gb|EFH32602.1| type I restriction-modification system, M subunit [Brucella abortus bv. 5 str. B3196] Length = 518 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 11 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 68 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 69 PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 121 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 122 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 180 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV L LL +P + DPTCG+GG L HVA Sbjct: 181 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 230 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 231 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 283 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 284 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 342 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L G +V+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 343 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 395 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 396 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 451 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 452 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 510 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 511 LKEMGYVG 518 >gi|163844960|ref|YP_001622615.1| type I restriction-modification system, M subunit [Brucella suis ATCC 23445] gi|163675683|gb|ABY39793.1| type I restriction-modification system, M subunit [Brucella suis ATCC 23445] Length = 508 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 126/548 (22%), Positives = 226/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 1 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 59 PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV L LL +P + DPTCG+GG L HVA Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L N G +V+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 333 ATL----NAKGVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 501 LKEMGYVG 508 >gi|23500570|ref|NP_700010.1| type I restriction-modification system, M subunit [Brucella suis 1330] gi|62317328|ref|YP_223181.1| HsdM restriction-modification system, M subunit [Brucella abortus bv. 1 str. 9-941] gi|83269309|ref|YP_418600.1| N-6 adenine-specific DNA methylase [Brucella melitensis biovar Abortus 2308] gi|161620897|ref|YP_001594783.1| type I restriction-modification system, M subunit [Brucella canis ATCC 23365] gi|189022583|ref|YP_001932324.1| type I restriction-modification system, M subunit [Brucella abortus S19] gi|225686602|ref|YP_002734574.1| type I restriction-modification system, M subunit [Brucella melitensis ATCC 23457] gi|254690828|ref|ZP_05154082.1| type I restriction-modification system methylation subunit [Brucella abortus bv. 6 str. 870] gi|254695864|ref|ZP_05157692.1| type I restriction-modification system methylation subunit [Brucella abortus bv. 3 str. Tulya] gi|254698609|ref|ZP_05160437.1| type I restriction-modification system methylation subunit [Brucella abortus bv. 2 str. 86/8/59] gi|254700051|ref|ZP_05161879.1| type I restriction-modification system methylation subunit [Brucella suis bv. 5 str. 513] gi|254703171|ref|ZP_05164999.1| type I restriction-modification system methylation subunit [Brucella suis bv. 3 str. 686] gi|254705683|ref|ZP_05167511.1| type I restriction-modification system methylation subunit [Brucella pinnipedialis M163/99/10] gi|254710914|ref|ZP_05172725.1| type I restriction-modification system methylation subunit [Brucella pinnipedialis B2/94] gi|254732056|ref|ZP_05190634.1| type I restriction-modification system methylation subunit [Brucella abortus bv. 4 str. 292] gi|256015604|ref|YP_003105613.1| type I restriction-modification system, M subunit [Brucella microti CCM 4915] gi|256029298|ref|ZP_05442912.1| type I restriction-modification system methylation subunit [Brucella pinnipedialis M292/94/1] gi|256043713|ref|ZP_05446636.1| type I restriction-modification system methylation subunit [Brucella melitensis bv. 1 str. Rev.1] gi|256058986|ref|ZP_05449197.1| type I restriction-modification system methylation subunit [Brucella neotomae 5K33] gi|256111244|ref|ZP_05452275.1| type I restriction-modification system methylation subunit [Brucella melitensis bv. 3 str. Ether] gi|256157493|ref|ZP_05455411.1| type I restriction-modification system methylation subunit [Brucella ceti M490/95/1] gi|256253530|ref|ZP_05459066.1| type I restriction-modification system methylation subunit [Brucella ceti B1/94] gi|256256010|ref|ZP_05461546.1| type I restriction-modification system methylation subunit [Brucella abortus bv. 9 str. C68] gi|256262259|ref|ZP_05464791.1| type I restriction-modification system protein [Brucella melitensis bv. 2 str. 63/9] gi|260544565|ref|ZP_05820386.1| type I restriction-modification system protein [Brucella abortus NCTC 8038] gi|260564900|ref|ZP_05835385.1| type I restriction-modification system protein [Brucella melitensis bv. 1 str. 16M] gi|260567901|ref|ZP_05838370.1| type I restriction-modification system protein [Brucella suis bv. 4 str. 40] gi|260756406|ref|ZP_05868754.1| type I restriction modification system protein [Brucella abortus bv. 6 str. 870] gi|260759838|ref|ZP_05872186.1| type I restriction modification system protein [Brucella abortus bv. 4 str. 292] gi|260763077|ref|ZP_05875409.1| type I restriction modification system protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882230|ref|ZP_05893844.1| type I restriction modification system protein [Brucella abortus bv. 9 str. C68] gi|261216284|ref|ZP_05930565.1| type I restriction modification system protein [Brucella abortus bv. 3 str. Tulya] gi|261220660|ref|ZP_05934941.1| type I restriction modification system protein [Brucella ceti B1/94] gi|261313103|ref|ZP_05952300.1| type I restriction modification system protein [Brucella pinnipedialis M163/99/10] gi|261318497|ref|ZP_05957694.1| type I restriction modification system protein [Brucella pinnipedialis B2/94] gi|261322930|ref|ZP_05962127.1| type I restriction modification system protein [Brucella neotomae 5K33] gi|261750534|ref|ZP_05994243.1| type I restriction modification system protein [Brucella suis bv. 5 str. 513] gi|261753793|ref|ZP_05997502.1| type I restriction modification system protein [Brucella suis bv. 3 str. 686] gi|265986295|ref|ZP_06098852.1| type I restriction modification system protein [Brucella pinnipedialis M292/94/1] gi|265990135|ref|ZP_06102692.1| type I restriction modification system protein [Brucella melitensis bv. 1 str. Rev.1] gi|265992757|ref|ZP_06105314.1| type I restriction modification system protein [Brucella melitensis bv. 3 str. Ether] gi|265995990|ref|ZP_06108547.1| type I restriction modification system protein [Brucella ceti M490/95/1] gi|294853394|ref|ZP_06794066.1| type I restriction-modification system protein [Brucella sp. NVSL 07-0026] gi|23464207|gb|AAN34015.1| type I restriction-modification system, M subunit [Brucella suis 1330] gi|62197521|gb|AAX75820.1| HsdM, type I restriction-modification system, M subunit [Brucella abortus bv. 1 str. 9-941] gi|82939583|emb|CAJ12563.1| N-6 Adenine-specific DNA methylase:N6 adenine-specific DNA methyltransferase, N12 class:N-6 DNA methylase:Type I restriction- [Brucella melitensis biovar Abortus 2308] gi|161337708|gb|ABX64012.1| type I restriction-modification system, M subunit [Brucella canis ATCC 23365] gi|189021157|gb|ACD73878.1| type I restriction-modification system, M subunit [Brucella abortus S19] gi|225642707|gb|ACO02620.1| type I restriction-modification system, M subunit [Brucella melitensis ATCC 23457] gi|255998264|gb|ACU49951.1| type I restriction-modification system, M subunit [Brucella microti CCM 4915] gi|260097836|gb|EEW81710.1| type I restriction-modification system protein [Brucella abortus NCTC 8038] gi|260152543|gb|EEW87636.1| type I restriction-modification system protein [Brucella melitensis bv. 1 str. 16M] gi|260154566|gb|EEW89647.1| type I restriction-modification system protein [Brucella suis bv. 4 str. 40] gi|260670156|gb|EEX57096.1| type I restriction modification system protein [Brucella abortus bv. 4 str. 292] gi|260673498|gb|EEX60319.1| type I restriction modification system protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676514|gb|EEX63335.1| type I restriction modification system protein [Brucella abortus bv. 6 str. 870] gi|260871758|gb|EEX78827.1| type I restriction modification system protein [Brucella abortus bv. 9 str. C68] gi|260917891|gb|EEX84752.1| type I restriction modification system protein [Brucella abortus bv. 3 str. Tulya] gi|260919244|gb|EEX85897.1| type I restriction modification system protein [Brucella ceti B1/94] gi|261297720|gb|EEY01217.1| type I restriction modification system protein [Brucella pinnipedialis B2/94] gi|261298910|gb|EEY02407.1| type I restriction modification system protein [Brucella neotomae 5K33] gi|261302129|gb|EEY05626.1| type I restriction modification system protein [Brucella pinnipedialis M163/99/10] gi|261740287|gb|EEY28213.1| type I restriction modification system protein [Brucella suis bv. 5 str. 513] gi|261743546|gb|EEY31472.1| type I restriction modification system protein [Brucella suis bv. 3 str. 686] gi|262550287|gb|EEZ06448.1| type I restriction modification system protein [Brucella ceti M490/95/1] gi|262763627|gb|EEZ09659.1| type I restriction modification system protein [Brucella melitensis bv. 3 str. Ether] gi|263000804|gb|EEZ13494.1| type I restriction modification system protein [Brucella melitensis bv. 1 str. Rev.1] gi|263091975|gb|EEZ16281.1| type I restriction-modification system protein [Brucella melitensis bv. 2 str. 63/9] gi|264658492|gb|EEZ28753.1| type I restriction modification system protein [Brucella pinnipedialis M292/94/1] gi|294819049|gb|EFG36049.1| type I restriction-modification system protein [Brucella sp. NVSL 07-0026] gi|326410992|gb|ADZ68056.1| type I restriction-modification system, M subunit [Brucella melitensis M28] gi|326554283|gb|ADZ88922.1| type I restriction-modification system, M subunit [Brucella melitensis M5-90] Length = 508 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 1 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 59 PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV L LL +P + DPTCG+GG L HVA Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L G +V+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 333 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 501 LKEMGYVG 508 >gi|187930245|ref|YP_001900732.1| N-6 DNA methylase [Ralstonia pickettii 12J] gi|187727135|gb|ACD28300.1| N-6 DNA methylase [Ralstonia pickettii 12J] Length = 498 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 123/527 (23%), Positives = 211/527 (40%), Gaps = 59/527 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ + + L +W++A L G DF I P +R+ + E+Y Sbjct: 1 MSNPQITLSQLEGHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQ 53 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114 D E + F + + + ++N L+ I + + + Sbjct: 54 EIVDETGDEELAWFPESHRFQIPEDCHWNDVRAKASNVGTALQRAMREIERANPDTLYGV 113 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F D +S+ RL A LL + ++FS + V ++ + YE+LI++F ++ A Sbjct: 114 FGDAQWSNK-ERLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNKKA 171 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VV L +L P T+YDP CGTGG L A+ HV + Sbjct: 172 GEFYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEMHGDV 221 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 K +GQE T ++ + + +E + +G TL F Sbjct: 222 K-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVVRGDTLRNPAFFEGDRLA 273 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F ++NPPF + E N GR GLP S G ++ H+ + Sbjct: 274 TFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---A 325 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 + GR A+VL LF E IR+ LLE DL++A++ L +LF+ T +A + +L Sbjct: 326 DATGRMAVVLPQGALFRKGV---EGSIRQKLLEMDLVDAVIGLAPNLFYGTGLAACILLL 382 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-- 468 RK+ + + KV + +A+ L+ G+ + + + +IL Y N + + + Sbjct: 383 RKRKSAKHKKKVLIADASRLFRR----GRAQNYLEAEHAAEILGWYRGFANVQDAVRVVS 438 Query: 469 -DYRTFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPL 510 D + + R PLR +A + +T + + Sbjct: 439 LDEIKAEDWTLNISRYVLPPLREDIPPLPVAIASFKDALTHCREAEE 485 >gi|254712613|ref|ZP_05174424.1| type I restriction-modification system methylation subunit [Brucella ceti M644/93/1] gi|254715684|ref|ZP_05177495.1| type I restriction-modification system methylation subunit [Brucella ceti M13/05/1] gi|261217433|ref|ZP_05931714.1| type I restriction modification system protein [Brucella ceti M13/05/1] gi|261320307|ref|ZP_05959504.1| type I restriction modification system protein [Brucella ceti M644/93/1] gi|260922522|gb|EEX89090.1| type I restriction modification system protein [Brucella ceti M13/05/1] gi|261292997|gb|EEX96493.1| type I restriction modification system protein [Brucella ceti M644/93/1] Length = 508 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 126/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 1 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 59 PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV L LL +P + DPTCG+GG L HVA Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L G IV+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 333 ATLNTK----GVCGIVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 501 LKEMGYVG 508 >gi|260167612|ref|ZP_05754423.1| type I restriction-modification system methylation subunit [Brucella sp. F5/99] gi|261757035|ref|ZP_06000744.1| type I restriction-modification system protein [Brucella sp. F5/99] gi|261737019|gb|EEY25015.1| type I restriction-modification system protein [Brucella sp. F5/99] Length = 508 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M + T + L N +WK+A+ L G +D+ I F L+RL E + ++R+ Sbjct: 1 MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114 + E + F+ S++ T ++L + I + + + + Sbjct: 59 PENVAYSDPDE-------HEFFLVKRARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111 Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169 + DF+S +RL A +L ++ +FS I+L ++ + M YE+LI +F + Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV L LL +P + DPTCG+GG L HVA Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220 Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + HGQE T A+ +L+ L I++G T+ Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + ++NPPF +D K G RF G+P + G + F+ H+ Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L G +V+ LF G SG+ IR +L+ DL EAI+ LP +LF T I Sbjct: 333 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL+ K ER+G+V I+ + K+ I+ + +I++ + + ++ Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F R++D + + R L+ ++A++ + + + + Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500 Query: 523 MQQIYPYG 530 ++++ G Sbjct: 501 LKEMGYVG 508 >gi|227500129|ref|ZP_03930200.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227217771|gb|EEI83071.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 487 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 139/464 (29%), Positives = 224/464 (48%), Gaps = 47/464 (10%) Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +GG L+ + + S + GQE+ +HA+C A MLI+ + R Sbjct: 1 SGGMLSTTYDMLKRRNSG----VDVRLFGQEILESSHAICAADMLIKGQDIRNIRGGDP- 55 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLP 329 + +TL+ D F ++ + NPPFG W + V +EHK G GRFG GLP Sbjct: 56 --EANTLTTDCFENQKIRLVIMNPPFGTPWGGKDAPSGQEKKVREEHKKGFNGRFGAGLP 113 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 +D +LF+ H NKL GRAAI+ + S LF+G SGES+ RRWL+END IEA Sbjct: 114 ATTDAQLLFMQHAVNKLTPD----GRAAIISNGSSLFSGGTTSGESQTRRWLIENDYIEA 169 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQ 448 I+ LP LF+ T+IA Y +I+S K ++R+GK+QLINA D++ +R GKKRR I+ + Sbjct: 170 IIGLPGQLFYNTDIAIYAFIISKNKRKDRQGKIQLINAVDMFKPLRKSLGKKRREIDLES 229 Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-------- 500 R+ I+ +Y + E ++S++ F Y+ V PL+ S L + +LE Sbjct: 230 RKNIVKLYSAFEENEYSKIFPNEEFLYKEYAVYEPLQRSGSLSLENIKKLEDSVLFTSNS 289 Query: 501 ----DITWRKLSPLH----------------QSFWLDILKPMMQQIYPYGWAESFVKESI 540 + +L ++ + + D++ + + + + + + Sbjct: 290 HIFNQADFEELQEMNPRNPEDEKKYQKYLKGKKYTDDVIDTLKENASDKHYDDLSEFQDL 349 Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 N K + S S + + D A + G DT + E + ++++ Sbjct: 350 LKNMLKDVDGH-SASRLNNILFELTEIDKNAVIQKNRKGTIELDTTTRDTEIIKLSQNVE 408 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644 +YF +EV PHVPDA + + K ++G EI F ++FY+Y Sbjct: 409 EYFNKEVFPHVPDAIYFYDYDENKKNSKEKLGAEIPFTKYFYEY 452 >gi|78358468|ref|YP_389917.1| type I restriction-modification system, M subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220873|gb|ABB40222.1| type I restriction-modification system, M subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 505 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 122/535 (22%), Positives = 216/535 (40%), Gaps = 62/535 (11%) Query: 1 MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 M+ G+ +L+ +W+ A L G DF I P +RL + + Sbjct: 1 MSRKNGNNNPVDLDIGTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYA 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFS 108 E+ S+ D+E + F + S N + L+ I + Sbjct: 61 VALEE------SDGDVEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQAN 114 Query: 109 DN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + IF D +++ RL A LL + ++FS + L ++ YE+LI++F Sbjct: 115 PDTLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNKHCKADILGQAYEYLIKKFA 172 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 ++ A +F TPR VV L +L +P T+YDP CGTGG L +A++HV Sbjct: 173 DLTNKKAGEFYTPRSVVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHV 222 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + G + + +GQE T ++ + + E +I++ TL F Sbjct: 223 KEHGGD-ENLMLGKLYGQEKNLTTSSIARMNLFLHGAE-------DFHIERSDTLRLPAF 274 Query: 288 ----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F ++NPPF + D + N GR GLP G ++ H+ Sbjct: 275 YSGDSLATFDCVIANPPFSLEKWGDDVWI-----NDPYGRNFAGLPPAKSGDFAWVQHMI 329 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + GR A+VL LF S E EIRR LLE D++EA++ L ++F+ T++ Sbjct: 330 KSM---ARKTGRMAVVLPHGVLFR---MSKEGEIRRKLLEMDMLEAVIGLGQNIFYGTSL 383 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 A + + + K + R KV I+A+ + G+ + + + I Y ++ + Sbjct: 384 APCVLVFRDSKPKAHRQKVLFIDASKEF----KTGRAQNELLPEHVDNIHRWYEGYQDVE 439 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R++ + P + ++++ + D L Q+ + Sbjct: 440 GICRVVTLDEIRENDFNLNIPRYVEPVIEEE---SMTIDQAIVNLKESLQAAYAA 491 >gi|89098145|ref|ZP_01171030.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL B-14911] gi|89087002|gb|EAR66118.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL B-14911] Length = 497 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 115/532 (21%), Positives = 222/532 (41%), Gaps = 54/532 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +WK+A+ L G +D+ I L+RL E ++ + +++ G Sbjct: 5 TLQELESHLWKSADILRGSVDSSDYKNYIFGLLFLKRLSDVSEERKNNLIKEHGEEIGIL 64 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLE---SYIASFSDNAKAIFEDFDFS 121 + + Y F+ + + + + + + + + + + DF+ Sbjct: 65 LADDP----DQYQFFVPENAKWEEIRKHAEDIGSAINVAFEVLENENATLEGVLTPIDFN 120 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180 L + +L ++ ++FS + L + + + M YE+LI+ F + + +F TP Sbjct: 121 RK-EVLTDS-VLQRLLQHFSLLILTNENLSEPDMLGRAYEYLIKMFADDAGKKGGEFYTP 178 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 VV L L+ P +YDPTCG+GG L ++++V G + P L Sbjct: 179 SKVVELIVKLI----------KPEEGMRVYDPTCGSGGMLIQSVDYVKHKGGN---PQTL 225 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCL 296 GQE T ++ +L+ L I++G T+ + F + Sbjct: 226 SLFGQEKNLGTWSIAKMNLLLHGL-------PDHRIEKGDTIRQPKLVEDGEIMLFDRVI 278 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF K +E ++ GRF GLP + G F+ H+ L+ G A Sbjct: 279 ANPPFSLKEWG-----REEAEHDSYGRFQHGLPPKNAGDYAFIQHMVASLKS----NGMA 329 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +V+ LF G A E IR+ LLE+DL+EA+V LP++LF+ T I + I + K Sbjct: 330 GVVMPHGVLFRGGA---EGRIRQGLLESDLLEAVVGLPSNLFYGTGIPACILIFNRDKEA 386 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 ER G V I + GK + + + +++ + + + + ++R++ Sbjct: 387 ERNGNVLFIAGESEF----KAGKNQNALREQDIEKMVATFDAYQYVEKYARVVSLEEIRN 442 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + +++ + L A ++ K + S + L +Q++ Sbjct: 443 NDYNLNITRYIDKSIEEEQID-LSAVLSEIKEIEVKHSRNKETLNRYLQELG 493 >gi|121595902|ref|YP_987798.1| N-6 DNA methylase [Acidovorax sp. JS42] gi|120607982|gb|ABM43722.1| N-6 DNA methylase [Acidovorax sp. JS42] Length = 500 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 123/529 (23%), Positives = 212/529 (40%), Gaps = 61/529 (11%) Query: 1 MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT+ T + + L + +W++A L G DF I P +R+ + E+ Sbjct: 1 MTQAASTITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EE 53 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AK 112 Y D + + F + + + ++N L+ I + + Sbjct: 54 YQEIVDETGDEQLAWFPESHRFQIPEDCHWNDVRTKASNVGTALQRAMREIEKANPDTLY 113 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 +F D +S+ RL A LL + ++FS + V ++ + YE+LI++F ++ Sbjct: 114 GVFGDAQWSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TPR VV L +L P T+YDP CGTGG L A+ HV + Sbjct: 172 KAGEFYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEQHG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 K +GQE T ++ + + +E + +G TL F Sbjct: 222 DVK-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVVRGDTLRNPAFFEVDR 273 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 F ++NPPF + E N GR GLP S G ++ H+ + Sbjct: 274 LATFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMAD 328 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR A+VL LF E IR+ LLE DL+EA++ L +LF+ T +A + Sbjct: 329 VS---GRMAVVLPQGALFRKGV---EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACIL 382 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 +L RK + + KV + +A+ L+ G+ + + + +IL Y + + + + Sbjct: 383 VLRKRKPVKHKKKVLIADASRLFRR----GRAQNYLEPEHAAEILGWYRGFADVQDTVRV 438 Query: 469 ---DYRTFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPL 510 D + + R PL+ +A + +T + + Sbjct: 439 VSLDEIKAEDWTLNISRYVLPPLQEDIPPLPDAIAAFKDALTRCREAEE 487 >gi|24371979|ref|NP_716021.1| type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] gi|24345831|gb|AAN53466.1|AE015486_7 type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] Length = 585 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 115/461 (24%), Positives = 189/461 (40%), Gaps = 52/461 (11%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF---VKVAGYSFYN 82 ++F I L+RL + + R V E YLA G + ++ E+ +FY Sbjct: 1 MDASEFKDYIFGMMFLKRLSDSFDEAREQVFEYYLAKGKTQVEAEALASDEDEYDSTFYI 60 Query: 83 TSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 S L N L I + N + + DF + +L L + Sbjct: 61 PEVARWSALKDLKHNIGEALNTAAEAIEEHNPNLEGVLVSIDF-NIKNKLSDNK-LRDLL 118 Query: 138 KNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 +F+ L + YE+LI+ F + +F TP +VV L ALL Sbjct: 119 SHFNKYRLRNSDFERPDLLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVALL----- 173 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 P +YDPT G+GG L N++A + L +GQE+ T A+C Sbjct: 174 -----KPHAGMRIYDPTAGSGGMLIQMRNYLATHNENA---ANLSLYGQEMNLNTWAICK 225 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAV 312 M + + S +I++G TL + + F ++NPPF Sbjct: 226 MNMFLHGV-------QSADIRKGDTLREPKHTIDGSLMTFDRVIANPPFSLS-----KWG 273 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 +++ + GRF G P G + F+ H+ G +V+ LF G S Sbjct: 274 KEDCDKDKYGRFPYGTPPKDSGDLAFVQHMIASTNDD----GMVGVVMPHGVLFRG---S 326 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 E +IR+ +LE+DL+EA+++LP+ LF+ T I L I++ +K ER+GKV I A + Sbjct: 327 SEKDIRKGILEDDLLEAVISLPSGLFYGTGIPACLLIINKQKPSERQGKVLFIYAELEYH 386 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 GK + + +I+ + S K +S ++ + Sbjct: 387 E----GKNQNSLRPQDINKIVTTFDSFSEIKRYSAVVKLKD 423 >gi|239995892|ref|ZP_04716416.1| hypothetical protein AmacA2_15636 [Alteromonas macleodii ATCC 27126] Length = 333 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 137/343 (39%), Positives = 195/343 (56%), Gaps = 24/343 (6%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + A FIW A+ L GDFK + +G+VILPFTLLRRLEC LE ++ +V ++ Sbjct: 3 TNNNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKDSVVKEAERVK 62 Query: 64 GSNIDLESFVK-----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 N+ E+ K G SF+NTS L +G ++ + NL +Y+ SFS +A+ Sbjct: 63 AMNLPEEAQEKMLIRATQTTNNPDGLSFFNTSPMDLGKMGQSDIKANLGTYVQSFSSDAR 122 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IFE F F + L+ A LLYK+ K F+ +L P + + M ++E LIRRF +E Sbjct: 123 EIFEHFKFDEFVGLLDDANLLYKVVKKFATTDLSPKNISNHDMGLVFEELIRRFAESSNE 182 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TPRD+V L T+L+ DD G+IRT+YDPT GTGGFL+ M +V + Sbjct: 183 TAGEHFTPRDIVRLTTSLVFMEDDDALT-KEGIIRTIYDPTAGTGGFLSSGMEYVHELNP 241 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + ++ GQEL PE++A+C A MLI+ + I+ G+TLS D +F Sbjct: 242 NA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPADQF 290 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDG 334 Y LSNPPFG W+K + ++ EH G GRFG GLP++SDG Sbjct: 291 DYMLSNPPFGVDWKKIESDIKDEHNLEGFDGRFGAGLPRVSDG 333 >gi|86145619|ref|ZP_01063949.1| Type I restriction-modification system M subunit [Vibrio sp. MED222] gi|85836590|gb|EAQ54716.1| Type I restriction-modification system M subunit [Vibrio sp. MED222] Length = 812 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 136/513 (26%), Positives = 214/513 (41%), Gaps = 60/513 (11%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 T S L +F+W++ + L G D+ + IL L+RL E + V + Y+ G Sbjct: 4 TLSLQQLESFLWESTDILRGSLDAADYRENILGMLFLKRLSDVFEDKKQKVIQHYIDNGR 63 Query: 65 SNIDLESFVKVAG---YSFYNTSEYSLSTLGS--TNTRNNLES---YIASFSDNAKAIFE 116 + + + +F+ + S L + +L+ I + K + Sbjct: 64 TKEQAKELARNRSEYVNTFFVPENANWSALTNVKEEIGQSLDRSMLAIEEHNSELKNVLT 123 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 DF RL A L + +FS L + ++ YE+LI+ F Sbjct: 124 SIDFGKK-TRLSNAQ-LRDLVLHFSKCRLLDEDFECPDILGKAYEYLIKMFADSAGRKGS 181 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TPR+VV L +LL P ++YDPT G GG L + N++ D G Sbjct: 182 GFYTPREVVKLMVSLL----------EPSSGMSVYDPTVGAGGMLVQSRNYLKDIGKD-- 229 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----R 291 L +GQE+ T +C M ++ + + +I+ G TL T Sbjct: 230 --VNLSLYGQEVNQGTWTICRMNMFLQG-------ESNVDIRHGDTLRNPKHTEANRLIT 280 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F +S+PPF K E N GRF G+P + G F+ H + Sbjct: 281 FDRVISHPPFSLKEWG-----GDELSNDTFGRFKYGIPPRNSGDFAFIQHTLATMNES-- 333 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GRA +VL PL AG E +IRR +LE+D+IEA++ LP +F+ T I T L IL+ Sbjct: 334 --GRAVVVLPHGPLHR--AGKSELDIRRGMLEDDVIEAVIGLPAGIFYGTGIPTCLLILN 389 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470 K ++RGKV ++A++ + K + + +IL Y E+ G FSR++ Sbjct: 390 KCKGRKQRGKVLFVDASNGF----KSNKWMMELRGEDSEKILKAYGDFESIGSFSRIVTV 445 Query: 471 RTFG---YRRIKVLRPLRMSFILDKTGLARLEA 500 Y R+ + +I D RLE+ Sbjct: 446 DEILKDKYCRLTI-----RLYIDDSEDGKRLES 473 >gi|291296826|ref|YP_003508224.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus ruber DSM 1279] gi|290471785|gb|ADD29204.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus ruber DSM 1279] Length = 538 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 104/560 (18%), Positives = 194/560 (34%), Gaps = 74/560 (13%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 +WK A+ L G ++ V+L L+ + A E + + E Sbjct: 21 EAELWKMADTLRGSMDAAEYKHVVLGLIFLKYISDAFEELHRKLEAERAQGADPEDPDEY 80 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124 A F+ E + L + +N + I + K + + Sbjct: 81 ---RAQNIFWVPPEARWAHLKAQARQPTIGQLVDNAMACIERDNPALKGVLPKEYARPAL 137 Query: 125 ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + L ++ S I++ + V+ +YE+ + +F S + +F TPR V Sbjct: 138 DK----TRLGQLIDLISNIKVGDEEARAKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCV 193 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----KIPPI 239 V L +L +YDP CG+ G ++ + + + + Sbjct: 194 VKLLVEML-----------EPYHGRVYDPCCGSAGMFVQSVEFIRAHATGNGNGGRAKAD 242 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + +GQE T + + IR +E I G T D F + + L+NP Sbjct: 243 ISIYGQESNYTTWRLAKMNLAIRGIEG--------QIAHGDTFHNDKFPDLKADFILANP 294 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF + + + R+ G+P + + + ++ H+ L G A Sbjct: 295 PFNVSDWGGE-------RLRDDKRWQYGVPPVGNANFAWVQHIVYHLSPTGVAGFVLA-- 345 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR------ 413 + S N SGE EIR+ L+E L++ +VALP LF+ T I LW L+ Sbjct: 346 -NGSMSSN---QSGEGEIRKNLIEAGLVDCMVALPGQLFYSTQIPACLWFLARDRSSRPY 401 Query: 414 ---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGK 463 K +RRG++ I+A + + R + D+ +I Y + Sbjct: 402 GAAGAAPGGKFRDRRGEILFIDARKMGRMVDRT---HRELTDEDIAKIASTYHAWRGEKD 458 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 D F + + + ++L EA S + ++ + Sbjct: 459 AGEYQDVPGFC-KSATLDEVRKHGYVLTPGRYVGAEAQ---EDDSEPFEEKMARLVAQLR 514 Query: 524 QQIYPYGWAESFVKESIKSN 543 +Q + + ++K Sbjct: 515 EQQAEAARLDKAIAANLKEL 534 >gi|293374801|ref|ZP_06621105.1| type I restriction-modification system, M subunit [Turicibacter sanguinis PC909] gi|292646559|gb|EFF64565.1| type I restriction-modification system, M subunit [Turicibacter sanguinis PC909] Length = 495 Score = 352 bits (904), Expect = 9e-95, Method: Composition-based stats. Identities = 120/526 (22%), Positives = 221/526 (42%), Gaps = 56/526 (10%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + L + +W++A L G +D+ I L+R+ E + Sbjct: 3 SITLQELESHLWESANILRGSIDSSDYKNYIFGLLFLKRVNDVFEEIC------HHLVDD 56 Query: 65 SNID-LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDF 118 D ++ + Y F+ E S L S T+ L + + + + +F+ Sbjct: 57 EGWDLEDAEEERDEYQFFVPKEARWSYLQSLTTDIGPALNHAFERLEEENGSLEGVFKQI 116 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDF 177 DF+ +L LL ++ ++FS I L +++ + M YE+LI++F + + +F Sbjct: 117 DFNDK-EKLPDT-LLIQLIQHFSKINLSNESLEEPDMLGRAYEYLIKQFADDAGKKGGEF 174 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP VV L L+ P + DPT G+GG L +++++ G + P Sbjct: 175 YTPTKVVELLVKLI----------KPEEGMRICDPTSGSGGMLIQSVDYIKSKGGN---P 221 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293 L +GQE T A+C +L+ L I++G T+ F Sbjct: 222 NNLSLYGQEKNLNTWAICKMNLLLHGL-------SDHRIEKGDTIRDPKLTENGELMLFD 274 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPP+ K +E E GRF GLP + G F+ H+ L Sbjct: 275 RVIANPPYSLKNWG-----REEASADEFGRFRFGLPPANAGDYAFVQHMLATLNHT---- 325 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+A +VL LF G A E +IR+ L++ DLIEAI+ LP +LF+ T I + + + Sbjct: 326 GKAGVVLPHGILFRGGA---EGKIRQGLVKEDLIEAIIGLPANLFYGTGIPATIILYNKD 382 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 K E R+ K+ I+A+ + GK + ++ D+ +I+ + + E + +SR++ Sbjct: 383 KEEARQNKIFFIDASRDFQE----GKNQNVLRDEDVEKIVSTFDNYEEIEKYSRIVTLDE 438 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + + ++ + ++A ++L + + Sbjct: 439 IKENDYNLNISRYIDTTEEEEQIDVVQAIKELQQLEQEREKIEATM 484 >gi|126453526|ref|YP_001064382.1| type I restriction-modification system M subunit [Burkholderia pseudomallei 1106a] gi|242316390|ref|ZP_04815406.1| putative type I restriction-modification system, M subunit [Burkholderia pseudomallei 1106b] gi|126227168|gb|ABN90708.1| putative type I restriction-modification system, M subunit [Burkholderia pseudomallei 1106a] gi|242139629|gb|EES26031.1| putative type I restriction-modification system, M subunit [Burkholderia pseudomallei 1106b] Length = 822 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 190/490 (38%), Gaps = 58/490 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + L ++K A+ L G ++F + I L+R + R V LA G S Sbjct: 4 TLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAGKSE 63 Query: 67 IDLE---SFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDN---AKAIFED 117 + + + G SFY L + + L + +N + E Sbjct: 64 FEAQTSADLKRWYGESFYVPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEVLEH 123 Query: 118 FDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAE 175 DFS + + + + L ++ +FS L + + YE+LIR F + Sbjct: 124 IDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFPDLLGAAYEYLIREFADSAGKKGG 183 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TPR VV + LL P ++YDP G+GG L + ++ + G Sbjct: 184 EFYTPRSVVRMMVRLL----------KPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDG- 232 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291 +GQE ++ ML+ + + +++ TLS+ R Sbjct: 233 --SRAELYGQEANGTVWSIAKMNMLLHGI-------ATADLRNDDTLSEPQHVEGGELMR 283 Query: 292 FHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANKL 346 F LSNPPF W + D+ RF G ++FL H+ L Sbjct: 284 FDRVLSNPPFSINWGTTDTDRTGQTVWSPKFRAERFKYGEVALGSKKADLMFLQHMVAVL 343 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GG+ A V+ LF G E IR+ ++E DL+EA++ LP +LF+ T I Sbjct: 344 RD----GGQLATVMPHGVLFRGGE---EGAIRKAMIEADLVEAVIGLPANLFYGTGIPAC 396 Query: 407 LWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + +L R K R+GKV INA + G+ + + + +I+ + + Sbjct: 397 ILVLRQRLGNATGKPVGRQGKVLFINADREYFE----GRAQNYLLPEHIEKIVSTFDAFA 452 Query: 461 NGK-FSRMLD 469 FS ++ Sbjct: 453 EVPCFSAIVS 462 >gi|163761335|ref|ZP_02168410.1| Type I restriction-modification system M subunit [Hoeflea phototrophica DFL-43] gi|162281492|gb|EDQ31788.1| Type I restriction-modification system M subunit [Hoeflea phototrophica DFL-43] Length = 496 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 113/471 (23%), Positives = 196/471 (41%), Gaps = 48/471 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + + L + +W+ A+ L G D+ I +RL + E+Y Sbjct: 1 MT--TLTLSQLESHLWRAADILRGSIDSGDYKHYIFGLLFFKRLSDVWQEEYEERLERYG 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + E + F+ + +G T+ + I + + +F+D DF Sbjct: 59 DAEIAADPEEHRFDIPKGHFWTDVRKHTTDIG-THLNAAFRA-IEDANMKLRGVFQDVDF 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ R A +L K+ ++F L V V+ YE+LI +F + + +F TP Sbjct: 117 NNK-ERFPDA-MLEKLLQHFETYRLRKSDVEPDVLGQAYEYLIAQFADDAGKKGGEFYTP 174 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + VV L L P ++YDPTCG+GG L +A++H+ G + P L Sbjct: 175 KMVVRLIVECL----------KPEEGMSIYDPTCGSGGMLLEAVHHLERQGKN---PKSL 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-------TGKRFH 293 GQE T A+C + + ++ + +G TL + + F Sbjct: 222 SLFGQEKNLNTWAICQMNLFLHDID-------DAKVARGDTLLEPKHLTGEGVKAIRTFD 274 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPF K + + GR G P S G + F+ H+ L+ Sbjct: 275 RVLANPPFSLKSWGHDVWSQGDA----YGRDRYGCPPKSYGDLAFVQHMVASLKED---- 326 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G +VL LF G A E IR L+ +DL+EA++ L +LF+ I + IL + Sbjct: 327 GVCGVVLPHGVLFRGGA---EGRIREGLIRDDLVEAVIGLAPNLFYGAGIPACILILRKQ 383 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K E R+GK+ ++N + + +GK + ++++ + Y + + Sbjct: 384 KPEARKGKILIVNGAEQ----KVDGKNQNLLSETNVATLAKAYDDFADAER 430 >gi|210611279|ref|ZP_03288834.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787] gi|210152043|gb|EEA83050.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787] Length = 500 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 106/536 (19%), Positives = 195/536 (36%), Gaps = 60/536 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E S IW A L G+ +++ V+L L+ + E + + Sbjct: 1 MAETNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKA 113 G + + A F+ S + + ++ I + K Sbjct: 59 ---GDGFEEDKDEYTAENIFFVPENARWSVISAAAHTPEIGTVIDEAMRSIEKENKRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L ++ F+ I++ ++ YE+ + +F + + Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIQMIDHGNSKDILGRTYEYCLAKFAEQEGKL 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP VV +L +YDP CG+GG + + + G + Sbjct: 172 AGEFYTPSCVVRTLVEVL-----------QPYNGRVYDPCCGSGGMFVQSSKFIENHGGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 K + +GQ+ P T + + IR +E+D + + T D + Sbjct: 221 IK---NISVYGQDSNPTTWKLAQMNLAIRGIEADLGKFSA------DTFFNDCHPQLKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF K + R+ G P ++ + +L H+ L Sbjct: 272 FIMANPPFNLSGWGQD-------KLLDDVRWQYGTPPANNANFAWLQHMIWHLAP----N 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE EIR+ ++ DL++ IVA+P+ LF+ T I LW L+ Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLAKN 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K +++GK I+A L T + K R + D ++I D Y + +G Sbjct: 379 K--KQKGKTLFIDARKLGTMVTR---KLRELTDVDIQRIADTYNAFVDG-----TLEDEK 428 Query: 474 GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + R +IL +E + S L + + + Sbjct: 429 GFCAVVTTQDIARQDYILTPGRYVGIEEQEDDGEPFEEKMSRLTTELSELFAKSHE 484 >gi|294495709|ref|YP_003542202.1| type I restriction-modification system, M subunit [Methanohalophilus mahii DSM 5219] gi|292666708|gb|ADE36557.1| type I restriction-modification system, M subunit [Methanohalophilus mahii DSM 5219] Length = 494 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 124/547 (22%), Positives = 213/547 (38%), Gaps = 72/547 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + L ++W A L G +DF I P +R+ + E A S Sbjct: 5 SLSELEQYLWDAANILRGPVDASDFKAYIFPLLFFKRISDVYDE------EYRQALDESG 58 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKAIFEDFDF 120 D E + + + + T ++ + D IF D ++ Sbjct: 59 GDEEYASFPELHDYIIPEGAHWNDVKDTSTNVGQALQHAFREIEKANQDKLYEIFGDVNW 118 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + RL LL + +FS L V ++ YE+LI++F + A +F TP Sbjct: 119 GNK-ERLSD-ELLNDLINHFSSKNLSKSYVEPDMLGQAYEYLIKKFADLTNRKAGEFYTP 176 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL +L P ++YDP CG+GG L +A+++V G + Sbjct: 177 RTVVHLMGNIL----------KPQEKESIYDPACGSGGMLLEAVHYVNSSGGDERTLK-- 224 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCL 296 +GQE T ++ + + + I +G TL F +F + Sbjct: 225 -LYGQEKNLTTSSIARINLFLHGI-------QDFQIIRGDTLRNPSFHEGDQLSQFDIVI 276 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF K + GR G P S+G ++ H+ + + GR Sbjct: 277 ANPPFSLKNWGQEHWSHDPF-----GRNIAGTPPKSNGDYAWVQHMISSMAPVT---GRM 328 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIVL LF G A E +IR+ L+END++EA++ L +LF+ T I+ + + RK E Sbjct: 329 AIVLPHGALFRGAA---EGKIRKKLIENDMLEAVIGLGPNLFYGTGISACILVFRARKDE 385 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 R+ KV I+A++ + G+ + + +LD Y E+ + S+++D + Sbjct: 386 SRKNKVLFIDASEQFQK----GRNQNFFLQEHADNVLDWYEKYEDVEDISKLVDIKE--- 438 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 + L RK + + + + + Q + +E Sbjct: 439 ---------------IEENEFNLNISRYVRKKLVVEEIDLEETFQELNQAYDEFLESEEK 483 Query: 536 VKESIKS 542 +K +K Sbjct: 484 MKSLLKE 490 >gi|149920793|ref|ZP_01909256.1| type I restriction-modification system methylation subunit [Plesiocystis pacifica SIR-1] gi|149818311|gb|EDM77763.1| type I restriction-modification system methylation subunit [Plesiocystis pacifica SIR-1] Length = 591 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 125/522 (23%), Positives = 213/522 (40%), Gaps = 53/522 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + L + +W+ A L G TD+ ILP +R+ A + R + + Y Sbjct: 97 EQVNLSKLESHLWEAANILRGSPVDRTDWKSYILPLLFFKRICDAWDEEREDMLKAY--- 153 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 G E V + + +G R+ + + D +F D +++ Sbjct: 154 DGQVFPDEFRFDVPDGCHWRVVRGATKHVG-KAIRDAMRGIEQANQDKLLGVFGDASWTN 212 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 RL LL + ++FS + L V + V+ + YE+LI++F ++ A +F TPR Sbjct: 213 K-ERLPD-DLLKDLIEHFSKLSLGNKAVKNDVIGDAYEYLIKKFADSTNKKAGEFYTPRS 270 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV L L P T+YDP CGTGG L A+ HV D G + Sbjct: 271 VVRLMVDTL----------DPQEGETIYDPACGTGGMLLAAVEHVKDAGGDPRTFFGK-L 319 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------FTGKRFHYCL 296 GQE T +V + + +E +I++G TL + + ++F L Sbjct: 320 FGQEKNLTTASVARMNLQLHGVE-------EFDIRRGDTLRRPAFASAEDHSLRQFDIVL 372 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF K ++ GR GLP G ++ H+ + G GR Sbjct: 373 ANPPFSLKNWG-----RDVWESDPWGRAFAGLPTDKSGDFAWVQHMVKSMAP---GHGRM 424 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL LF G A E +IR+ LLE D IE ++ L +LF+ T +A + +L K Sbjct: 425 AVVLPQGALFRGGA---EGKIRKKLLELDRIEVVIGLAPNLFYGTGLAACILVLRMTKPA 481 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 R+ KV +++ + L+ G+ + + + Q+L + E+ + +R++ Sbjct: 482 ARKKKVLVVDGSSLFRK----GRAQNHLEPEHGAQMLSWVRAFEDVEDRARVVSLDEIEE 537 Query: 476 RRIK------VLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 VL P+ +A +A + + + Sbjct: 538 EDWTLNISRYVLPPIGKDIPPLPEAVADFKAALARCREAEEA 579 >gi|124008029|ref|ZP_01692728.1| type I restriction-modification system specificity subunit [Microscilla marina ATCC 23134] gi|123986443|gb|EAY26249.1| type I restriction-modification system specificity subunit [Microscilla marina ATCC 23134] Length = 921 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 115/490 (23%), Positives = 205/490 (41%), Gaps = 58/490 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + A L NF+++ + L G+ +++ + I L+RL E + R+ Sbjct: 2 KKKITLAWLENFLFQACDILRGNMDASEYKEYIFGILFLKRLNDKFEQDQEKRRKALEKK 61 Query: 63 G-GSNIDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKA------- 113 G + + + K Y +Y G + + ++ + + Sbjct: 62 GLAAEVVARALNKANAYDYYIPENARWKGKDGIQHLKKHVGDALNKALAAIEDANLDKLS 121 Query: 114 -IFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168 + + DF+ TI + + L ++F ++L + ++ YE+LI+ F Sbjct: 122 GVLKSIDFNRTIGKNKKTLDDTKLINFIQHFDTVDLRDENFEFPDILGAAYEYLIKFFAD 181 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +F TP +VV L LL P +YDPTCG+GG L N+V Sbjct: 182 SAGKKGGEFYTPAEVVKLMVQLL----------EPAPNAEVYDPTCGSGGMLIQCKNYVE 231 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 ++ +GQEL T A+C ML + I+QG T++ L Sbjct: 232 ARYNNASKL---SFYGQELSGTTWALCKMNMLFHDI-------YDAKIEQGDTINNPLHV 281 Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 +RF ++NPPF +++D + G RF +P+ S +F+ H+ Sbjct: 282 VDGELQRFDVVMANPPFSADYKQD-------NIIGFKDRFRHWMPEKSKADFMFVQHMVR 334 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ GR +V+ LF G S E ++R WLLE ++A++ LP LF+ T I Sbjct: 335 VLKD----NGRMGVVMPHGVLFRG---STEKDMRHWLLERGYLDAVIGLPASLFYGTGIP 387 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463 L I++ K ++R KV INA + +N + + + +I +Y R+ + Sbjct: 388 ASLIIINK-KGADKRRKVLFINADREYKEEKN----QNKLRPEDISKITYVYHQRQELPQ 442 Query: 464 FSRMLDYRTF 473 +SR++ Y F Sbjct: 443 YSRLMSYNDF 452 >gi|163847372|ref|YP_001635416.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl] gi|222525218|ref|YP_002569689.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl] gi|163668661|gb|ABY35027.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl] gi|222449097|gb|ACM53363.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl] Length = 528 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 110/552 (19%), Positives = 197/552 (35%), Gaps = 82/552 (14%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W+ A L G ++ V+L L+ + A E R + + + Sbjct: 24 LWQTANALRGSMDAAEYKHVVLGLIFLKYISDAFEEHRERL-----QNIPNADPEDPDEY 78 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIARL 127 A F+ + L + + N+ I + + K + + + Sbjct: 79 RADNVFWVPPDARWVELRNNARQPNIGELIDQAMIAVERDNPSLKGVLPKDYARPALDQ- 137 Query: 128 EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L ++ S I + V+ +YE+ + +F S + +F TPR VV L Sbjct: 138 ---QRLGQLIDLVSNIPVGTASARSKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVRL 194 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----KIPPILVP 242 +L +YDP CG+ G ++ + + + + + Sbjct: 195 LVEML-----------EPYQGRVYDPCCGSAGMFIQSVEFIEAHATGNGNGSRARARISI 243 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQEL T + + IR ++ I+QG T D F + Y L+NPPF Sbjct: 244 YGQELNYTTWRLAKMNLAIRGIDGR--------IEQGDTFRNDRFPDLKADYILANPPFN 295 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + + R+ G+P + + + ++ H+ + L G A + Sbjct: 296 MKEWGGE-------QLRNDKRWQYGIPPVGNANFAWVQHIVHHLAPAGVAGFVLA---NG 345 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL----SNRKTEER 418 S N SGE EIRR L+E DL++ +VALP LF+ T I LW L +N K +R Sbjct: 346 SMSSN---QSGEGEIRRKLIEADLVDCMVALPGQLFYSTQIPACLWFLARNRNNGKFRDR 402 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF---- 473 R ++ I+A L + R + D++ +I Y + D F Sbjct: 403 RKQILFIDARRLGRMVDRI---HRELTDEEIERIACTYHAWRGESDAGEYRDIPGFCKSA 459 Query: 474 --------GYRRIKVLRPLRM-SFILDKTGLARLEADITW----RKLSPLHQSFWLDILK 520 GY VL P R + + + W + + + + Sbjct: 460 SLEDVRKHGY----VLTPGRYVGSEVREDDDEPFAEKMQWLVAQLREQQAEAAKLDEAIV 515 Query: 521 PMMQQIYPYGWA 532 +Q++ + Sbjct: 516 ANLQELGFWEQK 527 >gi|295101280|emb|CBK98825.1| Type I restriction-modification system methyltransferase subunit [Faecalibacterium prausnitzii L2-6] Length = 500 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 107/537 (19%), Positives = 194/537 (36%), Gaps = 62/537 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E S IW A L G+ +++ V+L L+ + E + E+ Sbjct: 1 MAENNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNAK 112 G + + A F+ S + T + + S I + K Sbjct: 59 ---GDGFEEDQDEYTAENIFFVPENARWSAIAAAAHTPEIGTVIDDAMRS-IEKENKRLK 114 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 I + + L ++ F+ I++ ++ YE+ + +F + + Sbjct: 115 DILPKNFARPELDK----RRLGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGK 170 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP VV +L +YDP CG+GG + + + G Sbjct: 171 LAGEFYTPSCVVRTLVEVL-----------QPFNGRVYDPCCGSGGMFVQSAKFIENHGG 219 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + GQ+ P T + + IR +E+D + + T D + Sbjct: 220 NINK---ISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFNDCHPQLKA 270 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF K + R+ G P + + +L H+ L Sbjct: 271 DFIMANPPFNLSGWGAD-------KLVDDVRWQYGTPPAGNANFAWLQHMIWHLAP---- 319 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GR +VL++ L GE EIR+ ++ DL++ IVA+PT LF+ T I LW L+ Sbjct: 320 NGRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLAK 377 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +++GK I+A L T + K R + D+ ++I D Y + +G Sbjct: 378 NK--KQKGKTLFIDARKLGTMVTR---KLRELTDEDIKKIADTYNAFVDG-----TLEDE 427 Query: 473 FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + + +IL +E + L + + + Sbjct: 428 KGFCAVVTTQDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMGRLTSELSELFAKSHE 484 >gi|146305600|ref|YP_001186065.1| type I restriction-modification system, M subunit [Pseudomonas mendocina ymp] gi|145573801|gb|ABP83333.1| type I restriction-modification system, M subunit [Pseudomonas mendocina ymp] Length = 908 Score = 346 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 111/492 (22%), Positives = 195/492 (39%), Gaps = 72/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + A L N + +DL G+ +++ + I L+R + R +R++ Sbjct: 1 MASAKLTLARLENLLLTACDDLRGNMDASEYKEYIFGMLFLKRASDLFDQRRDEIRKEGK 60 Query: 61 AFGGSNID----LESFVKVAGYSFYNTSEYSLST------------LG------STNTRN 98 A G S+ D LE + +G F+ + L T Sbjct: 61 AAGLSDDDIKANLEDPDQYSGKYFFVPERARWNDGWVDEKWNVHPALKHVKENVGTALNK 120 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRV-M 155 LE+ + + + + + +F+ I L+ L +NF I L + + Sbjct: 121 ALEALEEANPEALQDVLKHINFNKKIGQNTLDD-DTLVNFIQNFEKIPLRDEDFEFPDLL 179 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 YE LI+ F + A +F TP +VV + + P ++YDPT G Sbjct: 180 GTAYEWLIKHFADSAGKKAGEFYTPAEVVRICVEIC----------DPQEDMSVYDPTVG 229 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +GG L A +++ +CG+ L +GQE T ++C ML+ + Sbjct: 230 SGGMLIQARDYLRECGADA---AELALYGQEKMGTTWSICKMNMLLHGISHAV------- 279 Query: 276 IQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I+Q TL + + RF L+NPPF + + K GRF +P+ Sbjct: 280 IRQQDTLREPQHQAEDGNLMRFDRVLANPPFSQNYIK--------KDIKHPGRFPVWMPE 331 Query: 331 I-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 ++F+ H+ L+ GR A V+ LF G E E R++ ++ +EA Sbjct: 332 KGKKADLMFVQHMLAVLKHD----GRMACVMPHGVLFRGAE---EREARKYFIDRGYLEA 384 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP++LF+ T I + +L+ ER+ V IN + EGK + + + Sbjct: 385 VIGLPSNLFYGTGIPACILVLNKAGAAERK-HVLFINGDREY----REGKAQNYLRPEDI 439 Query: 450 RQILDIYVSREN 461 +I+ Y + Sbjct: 440 DKIVHAYRAGLE 451 >gi|147920566|ref|YP_685637.1| type I restriction modification system, methyltransferase subunit [uncultured methanogenic archaeon RC-I] gi|110621033|emb|CAJ36311.1| type I restriction modification system, methyltransferase subunit [uncultured methanogenic archaeon RC-I] Length = 499 Score = 346 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 127/548 (23%), Positives = 219/548 (39%), Gaps = 64/548 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E + ++ +W+ A+ L G D+ I L+RL E Sbjct: 1 MSEK-LTFETMKAKVWEAADILRGSIDSADYKNYIFGMLFLKRLSDVFEEE------AEK 53 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLE---SYIASFSDNAKAIF 115 + ++ + F+ + S L S+N + L I ++ + + Sbjct: 54 IEKETGDKDAAWNDPDEHQFFVPEKARWSELKKSSSNIGDKLNKACEAIEDKNNVLEGLL 113 Query: 116 EDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEV 170 DF++ +L + L ++ ++FS I + + M +YE+LI +F + Sbjct: 114 ASIDFNT--DKLGEPKQRDATLSQLIQHFSKIPMRNSDFAEPDMLGRVYEYLIEKFADDA 171 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TPR VV L LL P + DPTCG+GG L ++ ++V Sbjct: 172 GKKGGEFYTPRMVVKLIVELL----------EPKEGMRICDPTCGSGGMLIESAHYVEQH 221 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--- 287 G + K L GQE T +C M++ + NI++G T+ Sbjct: 222 GGNSK---NLSLFGQEKNIGTWGICKMNMVLHG-------YVDVNIEKGDTIRDPKHVKD 271 Query: 288 -TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 F ++NPPF +E + GRF G+P + G F+ H+ L Sbjct: 272 GQLMLFDRVIANPPFSLD-----KWGREEAEKDGFGRFSYGIPPKTKGDFAFVEHMIATL 326 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G+ +V+ LF G A E +IR ++++DLIEAI+ LPT+LF+ T I Sbjct: 327 NSK----GKLGVVVPHGVLFRGAA---EGKIREGIIKDDLIEAIIGLPTNLFYGTGIPAA 379 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + I++ K ER+GK+ ++NA D + GK + + D +I+ + K+S Sbjct: 380 ILIMNRDKPAERKGKIIIVNAVDEYQE----GKNQNYLRDQDIEKIVRAVREYIDIDKYS 435 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 R++ L +S +D T K + +I K M Sbjct: 436 RIVSLDEIKENDY----NLNISRYVDTTMEEPPIDIKAVLKELKEIEVRRAEIGKKMDAY 491 Query: 526 IYPYGWAE 533 + G+ E Sbjct: 492 LKELGYVE 499 >gi|257440121|ref|ZP_05615876.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165] gi|257197473|gb|EEU95757.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165] Length = 500 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 107/537 (19%), Positives = 193/537 (35%), Gaps = 62/537 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E S IW A L G+ +++ V+L L+ + E + E+ Sbjct: 1 MAENNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNAK 112 G + + A F+ S + T + + S I + K Sbjct: 59 ---GDGFEEDQDEYTAENIFFVPENARWSAIAAAAHTPEIGTVIDDAMRS-IEKENKRLK 114 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 I + + L ++ F+ I++ ++ YE+ + +F + + Sbjct: 115 DILPKNFARPELDK----RRLGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGK 170 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP VV +L +YDP CG+GG + + + G Sbjct: 171 LAGEFYTPSCVVRTLVEVL-----------QPFNGRVYDPCCGSGGMFVQSAKFIENHGG 219 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + GQ+ P T + + IR +E+D + + T D + Sbjct: 220 NINK---ISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFNDCHPQLKA 270 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF K + R+ G P + + +L H+ L Sbjct: 271 DFIMANPPFNLSGWGAD-------KLVDDVRWQYGTPPAGNANFAWLQHMIWHLAP---- 319 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GR +VL++ L GE EIR+ ++ DL++ IVA+PT LF+ T I LW L+ Sbjct: 320 NGRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLAK 377 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +++GK I+A L T + K R + D+ ++I D Y + +G Sbjct: 378 NK--KQKGKTLFIDARKLGTMVTR---KLRELTDEDIKKIADTYNAFVDG-----TLEDE 427 Query: 473 FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + +IL +E + L + + + Sbjct: 428 KGFCAVVTTQDIANQDYILTPGRYVGIEEQEDDVEPFEEKMGRLTSELSELFTKSHE 484 >gi|261367888|ref|ZP_05980771.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176] gi|282570699|gb|EFB76234.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176] Length = 500 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 101/536 (18%), Positives = 196/536 (36%), Gaps = 60/536 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + S IW A L G+ +++ V+L L+ + E + + Sbjct: 1 MADKNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKA 113 G + + A F+ + S + + ++ I + K Sbjct: 59 ---GDGFEEDKDEYTAENIFFVPEDARWSVIAAAAHTPEIGTVIDEAMRSIEKENKRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L ++ F+ I++ ++ YE+ + +F + + Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIQMMEHGDSKDILGRTYEYCLSKFAEQEGKL 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP VV +L +YDP CG+GG + + + G + Sbjct: 172 AGEFYTPSCVVRTLVEIL-----------QPYNGRVYDPCCGSGGMFVQSAKFIENHGGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + GQ+ P T + + IR +E+D + + T D + Sbjct: 221 INK---ISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFNDCHPQLKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + K + R+ G P + + ++ H+ L Sbjct: 272 FIMANPPFNLSDWGQE-------KLLDDVRWQYGTPPAGNANFAWMQHMIWHLAP----N 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE EIR+ ++ DL++ IVA+P+ LF+ T I LW L+ Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLAKN 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K +++GK I+A + T + K R + D+ +++ D Y + +GK Sbjct: 379 K--KQKGKTLFIDARKMGTMVTR---KLRELTDEDIQKLADTYNAFVDGKL-----EDVK 428 Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + + +IL +E + L + Q+ + Sbjct: 429 GFCAVATTEEIAKQDYILTPGRYVGIEEQQDDGEPFEDKMERLTKELSGLFQKSHE 484 >gi|261417779|ref|YP_003251461.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y412MC61] gi|319767408|ref|YP_004132909.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y412MC52] gi|261374236|gb|ACX76979.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y412MC61] gi|317112274|gb|ADU94766.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y412MC52] Length = 497 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 105/521 (20%), Positives = 202/521 (38%), Gaps = 60/521 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W A+ L + ++ V+L L+ + + + ++ + + Sbjct: 9 KLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKE-----DPDFAEDRDA 63 Query: 74 KVAGYSFYNTSEYSLSTLGST-------NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +A F+ S + + I +D+ K + + + Sbjct: 64 YMADGVFWVPETARWSYIAERSKSPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPELDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L +I FS I++ V+ +YE+ + +F + +G +F TP+ VV Sbjct: 124 ----RILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVK 179 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L ++ +YDP CG+GG +M V + + + +GQ Sbjct: 180 LMVEMI-----------QPFKGYVYDPACGSGGMFVQSMKFVEEHAGN---KFDISIYGQ 225 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E P T + + IR +E++ + T +DL + Y L+NPPF Sbjct: 226 ESNPTTWKLAKMNLAIRGIENNLGP------KHADTFHEDLHPTLKADYILANPPFNDSD 279 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 ++ R+ G+P + + +L H+ +KL + G+AA+VL++ L Sbjct: 280 WGQPKLID-------DPRWKFGIPPAGNANYAWLQHMIDKL----SQNGKAAVVLANGSL 328 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 SGE EIR+ ++ DL++AI+ALP LF+ T I +WIL+ K + K I Sbjct: 329 --SSMTSGEGEIRKNIVNADLVDAIIALPDKLFYTTQIPVCIWILNRNK--KHPRKTLFI 384 Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPL 484 +A + K R + D+ R+I D Y++ +N + + G+ + + Sbjct: 385 DARKFGQLVTR---KLRELTDEDIRKIADTYINWQNNENYEDVQ----GFCKSATIDDIR 437 Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 ++IL +E + + L Q+ Sbjct: 438 EHNYILTPGRYVGIEEEEEDGESFEEKMERLTATLAKQFQK 478 >gi|114319660|ref|YP_741343.1| type I restriction-modification system, M subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114226054|gb|ABI55853.1| type I restriction-modification system, M subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 808 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 114/477 (23%), Positives = 184/477 (38%), Gaps = 61/477 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L ++K A+ L G ++F + I L+R + R VR A G Sbjct: 1 MILTLNQLERHLFKAADILRGRMDASEFKEYIFGMLFLKRCSDVFDQRREEVRGSLQASG 60 Query: 64 GSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDN---AKAI 114 S ++ +++ F+ + L + + L +A ++ + Sbjct: 61 KSEAEIAQLIEMPHWYKADFFVPPQSRWDHLLNEAHQGVGSALNKALAGLEEHNHGLAGV 120 Query: 115 FEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171 E DF+ + L L + +FS L + + YE+LIR F Sbjct: 121 LEHIDFTRKVGSTTLPDRK-LRDLIAHFSEYRLRNEDFEFPDLLGAAYEYLIRDFADSAG 179 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TPR VV + L+ P +YDP G+GG L A ++ + G Sbjct: 180 KKGGEFYTPRPVVRMMVRLM----------DPQEGHRVYDPCMGSGGMLIMAKEYLEEHG 229 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 P +L GQE A+ ML+ + S +++ TL+ Sbjct: 230 GD---PRLLNLFGQEASGSVWAIAKMNMLLHGI-------SSADLRNEDTLTDPQHVEGG 279 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANK 345 KRF L+NPPF + + E RF G ++FL H+ Sbjct: 280 ELKRFDRILTNPPFSIGYTPSQHFPE---------RFRYGSVPEGAKKADLMFLQHMVAC 330 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L N GR A V+ LF G E IR LLE+DL+EA++ L +LF+ T I Sbjct: 331 L----NANGRLATVMPHGVLFRGG---DEKRIRAGLLEDDLVEAVIGLAPNLFYGTGIPA 383 Query: 406 YLWILSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + +L + K ER+GKV INA + G+ + + + +I Y + E Sbjct: 384 SILVLRAKGAKPAERQGKVLFINADREYHE----GRAQNHLLPEHIEKIASTYEAFE 436 >gi|148266054|ref|YP_001232760.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] gi|146399554|gb|ABQ28187.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] Length = 824 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 106/464 (22%), Positives = 182/464 (39%), Gaps = 57/464 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFGGSNIDLESFVKVA 76 +DL G+ +++ + I L+RL + R + ++ + Sbjct: 16 ACDDLRGNMDASEYKEYIFGMLFLKRLSDLFDQEREQLAKDLKEKGMAEAVIAGQLNNPD 75 Query: 77 GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFS----DNAKAIFEDFDFSSTI-ARLEK 129 Y+F+ E S + TN NL + + D + + + +F+ I R Sbjct: 76 KYTFFVPEEAHWSNIRHLKTNVGTNLNKALEALEDANVDALQDVLKGINFNKKIGQRSLD 135 Query: 130 AGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 L +NF I L + + YE+LI+ F + A +F +P DVV Sbjct: 136 DDTLANFIQNFEKIPLRDENFEFPDLLGAAYEYLIKYFADSAGKKAGEFYSPADVVRTLV 195 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++ P ++YDPTCG+GG L ++V +CG P L GQE Sbjct: 196 EIV----------DPQPGMSVYDPTCGSGGMLIQTRDYVRECGGD---PRDLALAGQESI 242 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPFGK 303 T ++C ML+ +E +I+Q TL + R L+NPPF + Sbjct: 243 GTTWSICKMNMLLHGIEH-------ADIRQEDTLRHPQHKAENNELQRHDRVLANPPFSQ 295 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + K GRF LP+ ++F+ H+ L+ G+ A V+ Sbjct: 296 NYIK--------KDIDYPGRFAVWLPEKGKKADLMFVQHMLAVLKAD----GKMATVMPH 343 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---EERR 419 LF G E RR +E+ +EA++ LP LF+ T I + +++ + + R Sbjct: 344 GVLFRGGE---EKAARRHFIEHGWLEAVIGLPAGLFYGTGIPACVLVMNKKDAGSGDNVR 400 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 V INA + EGK + + + +I+ Y + + Sbjct: 401 DHVFFINADREY----REGKAQNFLRPEDISKIVHAYRTMADVP 440 >gi|257438277|ref|ZP_05614032.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165] gi|257199239|gb|EEU97523.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165] Length = 501 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 106/536 (19%), Positives = 199/536 (37%), Gaps = 60/536 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + IW A L G+ +++ V+L L+ + E + + Sbjct: 1 MAEKNTADIGFEKQIWNAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVA--- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113 G + + + F+ + S + + ++ I + K Sbjct: 58 --DGDGFEEDRDEYTSEGIFFVPAGARWSDVSAKAHDPEIGQVIDDAMRAIEKENVRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I +F+ L+K L ++ F+ I++ ++ YE+ + F + + Sbjct: 116 ILPK-NFARQ--ELDKR-RLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP VV +L +YDP CG+GG + V + + Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------QPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQ+ P T + + IR +E D + + T D R Sbjct: 221 IN---DISIYGQDSNPTTWKLAQMNLAIRGIEPDLGKYAA------DTFLDDQHPTMRAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y ++NPPF + + + R+ G+P S+ + +L H+ L G Sbjct: 272 YIMANPPFNLSNWGAE-------QLKDDVRWQYGMPPASNANFAWLQHMIYHLAP----G 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE +IR+ ++ DL++ I+A+PT LF+ T I LW +S R Sbjct: 321 GRMGMVLANGSL--SSQSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKR 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K ++ GK I+A + + K R + D+ ++I D Y + NG Sbjct: 379 K--KQAGKTLFIDARKMGDMVSR---KLRELTDEDIKKIADTYNAYVNG-----TLEDVK 428 Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + + +IL +E + + L + +Q + Sbjct: 429 GFCAVVDTEKIAEQDYILTPGRYVGVEEQEDDGEPFEEKMARLTSELSDLFKQSHK 484 >gi|83590508|ref|YP_430517.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073] gi|83573422|gb|ABC19974.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073] Length = 516 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 122/555 (21%), Positives = 221/555 (39%), Gaps = 62/555 (11%) Query: 1 MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAV 55 MTE T ++L N++W+ A + G + ILP L+RL E + Sbjct: 1 MTENTNMDLSTLENWLWEAACVIRGAVDAPKYKDYILPLIFLKRLSDVFEDEIARLAEEI 60 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDN 110 + + + V+ FY + + +TN L S + + + Sbjct: 61 FDSIEEALKQVEEDHALVR-----FYIPPQARWDAISRQTTNIGEYLTSAVRAVARENPK 115 Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IFE+ DF++ + + LY + + S L V ++ YE+L+R+F Sbjct: 116 LHGIFENIDFNAQMAGQPVIDNDRLYNLIQVLSRHRLGLKDVEVDILGRAYEYLLRKFAE 175 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TPR+V L LL P +YDP CG+GG L ++ + Sbjct: 176 GQGQSAGEFYTPREVTWLMAYLL----------EPRPGDEIYDPACGSGGLLIKSVLALK 225 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + +GQE+ T A+ I LE+D I+ G T+++ FT Sbjct: 226 ETYGDDPRIAPVKIYGQEILYTTFAMAKMNAFIHDLEAD--------IRLGDTMARPAFT 277 Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHL 342 + F +NP + + ++ RF G+P S ++ H+ Sbjct: 278 NPDGSLRTFDKVTANPMWN------QKFPLPLYEEDPFDRFKFGGIPPASSADWGWIQHM 331 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFF 399 L+ GG+ A+VL + + G G E +IR+ +ENDL+E ++ LP ++F+ Sbjct: 332 FASLKE----GGKMAVVLDTGSVSRGSGNQGSNRERDIRKVFVENDLVECVILLPENMFY 387 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS- 458 T + +++ K + ++ LINA+ L+T G+ + + D+ +Q+ IY Sbjct: 388 NTTAPGIIMVINKAK--KHPAEILLINASKLFTK----GRPKNYMEDEHIKQVYSIYREW 441 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 RE S+++ + P R I K +E + + Sbjct: 442 REEEGLSKIIPVEEAARNDYNL-SPSRYVSINGKEEYRPIEEILVELAEVEEERQAVDKE 500 Query: 519 LKPMMQQIYPYGWAE 533 L ++ ++ GW Sbjct: 501 LNDILGKLGFGGWLN 515 >gi|226225587|ref|YP_002759693.1| type I restriction-modification system DNA methylase [Gemmatimonas aurantiaca T-27] gi|226088778|dbj|BAH37223.1| type I restriction-modification system DNA methylase [Gemmatimonas aurantiaca T-27] Length = 519 Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats. Identities = 105/534 (19%), Positives = 185/534 (34%), Gaps = 59/534 (11%) Query: 2 TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 ++ ++A++ +W A+ L + ++ V+L L+ + A E + + ++ Sbjct: 8 SKSAATSANIGFEAKLWAAADALRNNMDAAEYKHVVLGLIFLKYISDAFEIKHAELASQH 67 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112 E A F+ +E L + + ++ + I + + K Sbjct: 68 ADGADPEDPDEY---RADNIFWVPAEARWQFLKANAPQPGVGTMVDDAMAAIERDNPSLK 124 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVS 171 + + + L +I S IEL + +YE+ + RF S Sbjct: 125 GVLPKDYARPGLDK----QRLGQIINLVSDIELGSSADKSKDTLGRVYEYFLSRFASAEG 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV + +L +YDP CG+GG + + Sbjct: 181 KSGGQFYTPSYVVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEAH- 228 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T + + IR ++ I G TL D + Sbjct: 229 --AGKLDDISIYGQESNYTTWRLAKMNLAIRGID--------AQIGHGDTLHDDKHPDLK 278 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + + R+ G P + + ++ H + L Sbjct: 279 ADYVLANPPFNDSDWRGE-------LLKDDQRWAYGAPPAGNANFAWVQHFIHHLSPTGL 331 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A + S N SGE EIR+ ++E DL++ +VALP LF+ T I LW L+ Sbjct: 332 AGFVLA---NGSMSSN---QSGEGEIRKTIVEADLVDCMVALPGQLFYSTQIPVCLWFLA 385 Query: 412 NRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 K +RRG V I+A L + RR + D I D Y + K + Sbjct: 386 RNKRNGRFRDRRGHVLFIDARKLGSMADRV---RRELTDADIANIADTYHAWRGDKDAGE 442 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 + + + + +L E + L L Sbjct: 443 YADVAGFCKSVYIDEIRQHGHVLTPGRYVGAEDIEDDGEPFELKMRRLSAQLHE 496 >gi|268316649|ref|YP_003290368.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252] gi|262334183|gb|ACY47980.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252] Length = 527 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 110/501 (21%), Positives = 192/501 (38%), Gaps = 66/501 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 ++L ++W A + G F ILP L+RL E + E+Y + Sbjct: 1 MALDISTLETWLWDAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDEMDRLAEEYGSRE 60 Query: 64 -----GSNIDLESFVKVAGYS--FYNTSEYSLSTLGST---NTRNNLESYIAS---FSDN 110 + + G S FY + + L + + + Sbjct: 61 VAQHIVEEEREQGIIARGGGSVRFYIPENARWKAIRTRGQVGLGQFLTDAVRAVARENPR 120 Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + + + DF++T R+ L ++ S L V ++ YE+L+R+F Sbjct: 121 LQGVIDIVDFNATAAGQRIVADEYLARLVDVLSRHRLGLRDVEPDILGRAYEYLLRKFAE 180 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TPR+V L +L P T+YDP CG+GG L + Sbjct: 181 GQGQSAGEFYTPREVAVLMARIL----------EPQPGMTVYDPCCGSGGLLIKCHLRLL 230 Query: 229 DCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + + GQE+ P T A+ +I +E+D I+ G Sbjct: 231 ETHGEEQNGHRRLPAHHAPLQLFGQEINPATFAMARMNAVIHDMEAD--------IRLGD 282 Query: 281 TLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 T+ F + F +NP + + + D ++N RF G+P S Sbjct: 283 TMRHPAFRDETGRLMAFDLVTANPMWNQNFPTDL------YENDPYERFHLGIPPASSAD 336 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVA 392 +L H+ L N GR A+VL + + G G E +IR+ +E DLIEA++ Sbjct: 337 WGWLQHMLASL----NDTGRMAVVLDTGAVSRGSGNQGASRERDIRKAFVERDLIEAVIL 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LF+ T + +++ +K G++ LINA+ L+ G+ + + D+ I Sbjct: 393 LPENLFYNTTAPGIIIVINRKK--RHPGEILLINASKLFAK----GRPKNYLTDEHIETI 446 Query: 453 LDIYVSRE-NGKFSRMLDYRT 472 +Y + S ++ Sbjct: 447 ARLYHEWQAEEGLSAIITNEE 467 >gi|85716963|ref|ZP_01047927.1| type I restriction-modification system methylation subunit [Nitrobacter sp. Nb-311A] gi|85696242|gb|EAQ34136.1| type I restriction-modification system methylation subunit [Nitrobacter sp. Nb-311A] Length = 500 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 119/528 (22%), Positives = 201/528 (38%), Gaps = 50/528 (9%) Query: 4 FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + L + +W A L G TD+ ILP +R+ + + RE Y Sbjct: 1 MSQQFQELRSALWDAANTLRGSAVDRTDWKGYILPLLFFKRISDVWDEETTEARELYGDA 60 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 S + +N + +G+ + ++ + D +F D+ + Sbjct: 61 DPSLFPEIHRFALPEGCHWNDVREVAANVGA-ALQRAMQEIERANPDTLFRVFGTADWGN 119 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPR 181 + LL + + FS I+L V V+ + YE+L+ +F +F TPR Sbjct: 120 R-EKFSD-ELLKDLIEGFSEIQLGNKAVSTDVLGDAYEYLVGKFADVTRRNKAGEFYTPR 177 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V + +L P ++YDP CGTGG L A+ HV G + Sbjct: 178 SIVRMMVDIL----------DPQEGESIYDPACGTGGMLLGAIEHVVRNGGDPRTFYGK- 226 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------KRFHYC 295 +GQE T A+ +++ +E + + TL FT F Sbjct: 227 IYGQEKNLTTAAIARMNLVLHGIE-------DFQVAREDTLRNPAFTDSSTSGLATFDCV 279 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + GR G+P S G F+ H+ + G R Sbjct: 280 IANPPFSLKEWG-----RDLWEADPWGRAQYGIPPESYGDYAFVQHMIASMVPI--GNSR 332 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A+VL LF S E IRR LLE D++EA++ L +LF+ T +A + +L RK Sbjct: 333 MAVVLPQGALFR---KSAEGTIRRALLEQDMVEAVIGLAPNLFYGTQLAGCVMVLRRRKP 389 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG---KFSRMLDYRT 472 E + KV +I+A+ L+ G+ + ++ QI+ Y + + LD Sbjct: 390 ENHQNKVLIIDASSLFRK----GRAQNFLDQGHSDQIVAWYRAFADVADRAKVATLDEIK 445 Query: 473 FGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + + R P+ + L+ + + + H L Sbjct: 446 KEGWTLNISRYVLPPIGQDIPPLPKAVEALKTALADARAAEDHLRKVL 493 >gi|239827073|ref|YP_002949697.1| N-6 DNA methylase [Geobacillus sp. WCH70] gi|239807366|gb|ACS24431.1| N-6 DNA methylase [Geobacillus sp. WCH70] Length = 498 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 105/521 (20%), Positives = 201/521 (38%), Gaps = 60/521 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W A+ L + ++ V+L L+ + + + ++ + + Sbjct: 9 KLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKE-----DPDFAEDRDA 63 Query: 74 KVAGYSFYNTSEYSLSTLGST-------NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +A F+ + + + I +D+ K + + + Sbjct: 64 YMADGVFWVPETARWNYIAERSKLPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPELDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L +I FS I++ V+ +YE+ + +F + +G +F TP+ VV Sbjct: 124 ----RILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVK 179 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L ++ +YDP CG+GG ++ V + + + +GQ Sbjct: 180 LMVEMI-----------QPFKGYVYDPACGSGGMFVQSIKFVEEHAGN---KFDVSIYGQ 225 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E P T + + IR +E++ + T +DL + Y L+NPPF Sbjct: 226 ESNPTTWKLAKMNLAIRGIENNLGP------KHADTFHEDLHPTLKADYILANPPFNDSD 279 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 K E R+ G+P + + +L H+ +KL G+AA+VL++ L Sbjct: 280 WGQP-------KLVEDPRWKFGVPPAGNANYAWLQHIIDKL----GQNGKAAVVLANGSL 328 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 SGE EIR+ ++ DL++AI+ALP LF+ T+I +WIL+ K + GK I Sbjct: 329 --SSTTSGEGEIRKNIVNADLVDAIIALPDKLFYTTSIPVCIWILNRNK--KNPGKTLFI 384 Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPL 484 +A + K R ++D+ R+I D Y+ +N + G+ + + Sbjct: 385 DARKFGQLVTR---KLRELSDEDIRKIADTYIHWQNNDNYEDVQ----GFCKSASLEEIR 437 Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +IL +E + + L ++ Sbjct: 438 EHDYILTPGRYVGVEEEEEDGESFEEKMERLTTTLAKQFKK 478 >gi|325107544|ref|YP_004268612.1| type I restriction-modification system, M subunit [Planctomyces brasiliensis DSM 5305] gi|324967812|gb|ADY58590.1| type I restriction-modification system, M subunit [Planctomyces brasiliensis DSM 5305] Length = 510 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 113/540 (20%), Positives = 197/540 (36%), Gaps = 77/540 (14%) Query: 1 MTEFTGSAASLANF------IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54 MT G + + +WK + G +++ IL ++ + + A Sbjct: 1 MTNGNGKQSETVSQAEINGILWKACDTFRGAVDPSEYKNYILVMLFVKYISDVWQDHYDA 60 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA- 113 + +Y ++ F + + +L N+ I D + Sbjct: 61 LVAEYGDPKSKTARERIERRLKRERFVLPVQCTFQSLYDQRNAANIGEVINEALDAIEDA 120 Query: 114 -------IFEDFDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYE 160 +F + DF+S E+ L + ++FS ++L P V + V+ + YE Sbjct: 121 NKEKLEGVFRNIDFNSESTLGQTRERNVRLKSLLEDFSDPKLDLRPSRVGNLDVIGDAYE 180 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI RF S + A +F TP +V L L+ P + DP CG+G L Sbjct: 181 YLIGRFASNAGKKAGEFYTPPEVSELIARLV----------DPQPGERICDPACGSGSLL 230 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 V +GQE T A+ M + ++ + I+ G Sbjct: 231 IKCGQKV--------GTNDFSLYGQENNGSTWALAKMNMFLHAMD-------NARIEWGD 275 Query: 281 TLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 T+ RF ++NPPF +++ ++ RF G+P + G + Sbjct: 276 TIRNPRLLSDDRLMRFEVVVANPPFSLD-----KWGQEDARSDHYNRFHRGVPPKNKGDL 330 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F+ H+ E GR A+V LF GRA E IR+ ++ DL++AI+ LP D Sbjct: 331 AFISHMV---ETITVESGRIAVVAPHGVLFRGRA---EGSIRKQFVDEDLLDAIIGLPPD 384 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T +A + + R GKV I+A+ + + + +I+ Y Sbjct: 385 LFYGTELAAAILVFRR---SNRDGKVLFIDASQEYADCKG----HNRLRKQDIERIVAAY 437 Query: 457 VSRENGKFSRMLDYRT----FGYRRI------KVLRPLRMSFILDKTGLARLEADITWRK 506 RE L + GY + PL + T LA ++ + + Sbjct: 438 SEREFIDKYAYLASKEDIQRNGYNLNIPRYVDTFVEPLPIDLESVGTRLAEVDQALAEAE 497 >gi|160945580|ref|ZP_02092806.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii M21/2] gi|158443311|gb|EDP20316.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii M21/2] Length = 500 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 102/536 (19%), Positives = 193/536 (36%), Gaps = 60/536 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + IW A L G+ +++ V+L L+ + E + + Sbjct: 1 MAEKNTADIGFEKQIWNAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVA--- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113 G + + + F+ + S + + ++ I + K Sbjct: 58 --DGDGFEEDRDEYTSEGIFFVPAGARWSDVSTKAHDPEIGQVIDDAMRAIEKENARLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L ++ F+ I++ ++ YE+ + F + + Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP VV +L +YDP CG+GG + V + + Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------QPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQ+ P T + + IR +E D + + T D R Sbjct: 221 IN---DISIYGQDSNPTTWKLAQMNLAIRGIEPDLGKYAA------DTFLDDQHPTMRAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y ++NPPF + + + R+ G+P S+ + +L H+ L G Sbjct: 272 YIMANPPFNLSNWGAE-------QLKDDVRWQYGMPPASNANFAWLQHMIYHLAP----G 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE +IR+ ++ DL++ I+A+PT LF+ T I LW +S R Sbjct: 321 GRMGMVLANGSL--SSQSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKR 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K ++ GK I+A + + K R + D+ ++I D Y + G Sbjct: 379 K--KQAGKTLFIDARKMGAMVSR---KLRELTDEDIKKISDTYNAYVEG-----TLEDVK 428 Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + + +IL +E + L + +Q + Sbjct: 429 GFCAVVDTEKIAEQDYILTPGRYVGVEEQEDDGEPFEEKMVRLTSELSDLFKQSHK 484 >gi|317131471|ref|YP_004090785.1| Site-specific DNA-methyltransferase (adenine-specific) [Ethanoligenens harbinense YUAN-3] gi|315469450|gb|ADU26054.1| Site-specific DNA-methyltransferase (adenine-specific) [Ethanoligenens harbinense YUAN-3] Length = 501 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 102/536 (19%), Positives = 192/536 (35%), Gaps = 60/536 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + IW A L G+ ++ VIL L+ + E + + + Sbjct: 1 MATTNSAETGFEKQIWDAACILRGNMDAAEYKHVILGLIFLKYISDRFEFRYNQLVK--- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 + + + + FY ++ + +N I + + K Sbjct: 58 --DKNGDEEDRDEYTSQNVFYVPPSARWESITAQAHMPEIGKIIDNAMDSIERENKSLKG 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + + + L ++ F+ I + ++ YE+ + RF + + Sbjct: 116 VLPKTFARPELDK----RRLGEVVDLFTNITIAETGGKMDMLGRTYEYCLGRFAEQEGKL 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP VV A++ +YDP CG+GG + V + Sbjct: 172 AGEFYTPASVVRTLVAVI-----------KPFDGRVYDPCCGSGGMFVQSAEFVKAHAGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + L +GQ+ P T +C + I +++D + T D + Sbjct: 221 IR---NLSVYGQDSNPTTWKLCRMNLAIHGIDADLGEAAA------DTFFNDRHPTMKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF K + R+ G P + + ++ H+ + Sbjct: 272 YILANPPFNLSGWGAD-------KLADDQRWKYGQPPAGNANFAWMQHMIFH----TSAK 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE IR+ ++E+DL+E I+A+P LF+ T I LW L Sbjct: 321 GRIGMVLANGSL--ASQNGGEGAIRKAIVEDDLVEGIIAMPPQLFYTTQIPVSLWFLDRA 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K ++ GK+ I+A + T + + R + + +I D + + ENG Sbjct: 379 K--KQPGKMLFIDARHMGTMVSR---RLREMTKEDISKISDTFEAFENG-----TLEDEA 428 Query: 474 GYR-RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + V + +IL L A+ + L M ++ + Sbjct: 429 GFCAAVPVEEISKQDYILTPGRYVGLAAEEDDCEPFEEKMDRLTSELSEMFKRSHE 484 >gi|325283711|ref|YP_004256252.1| type I restriction-modification system, M subunit [Deinococcus proteolyticus MRP] gi|324315520|gb|ADY26635.1| type I restriction-modification system, M subunit [Deinococcus proteolyticus MRP] Length = 505 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 106/538 (19%), Positives = 199/538 (36%), Gaps = 63/538 (11%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + + +W+ + G +++ +L ++ + + A++ +Y + Sbjct: 7 QSEINAILWRACDTFRGTVDPSEYKNYLLTMLFVKYISDVWQDHYDALKAEYG-----DD 61 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFD 119 + ++ F L + +NL I + +F + Sbjct: 62 EDRIRRRLERDRFVMPEGTLFKDLYAQRGADNLGEIIDQALLAIEDANKGKLSGVFRNIS 121 Query: 120 FSSTI---ARLEKAGLLYKICKNF--SGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEG 173 F+S E+ L + ++F ++L P + + ++ N YE+LI RF + + Sbjct: 122 FNSEAALGQTKERNIRLKNLLEDFHHPKLDLRPSRIGNLDIIGNAYEYLIGRFAAGAGKK 181 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP +V L L +P +YDPTCG+G L Sbjct: 182 AGEFYTPPEVSDLMARL----------TAPQPGERIYDPTCGSGSLLIKCAQ-----NVQ 226 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289 + +GQE T+A+ M + ++ I+ G T+ L Sbjct: 227 AQGSQNYAIYGQEQNGSTYALARMNMFLHGVD-------DARIEWGDTIRNPLHLEDDKL 279 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F ++NPPF +D HK RF G+P G F+ H+ L Sbjct: 280 MKFEVVVANPPFSLDKWGAEDVSSDRHK-----RFERGIPPKGKGDYAFISHMLGSL--- 331 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G R +V+ LF G A E +IR L+E L++A++ LPT+LFF T I L + Sbjct: 332 AEVGSRMVVVVPHGVLFRGAA---EGKIRARLIEEGLLDAVIGLPTNLFFGTGIPAALLV 388 Query: 410 LSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 +R G V I+A+ + + GK + + + +I+D Y +R K++R Sbjct: 389 FRKGAEAQRNGQADVLFIDASREFAA----GKNQNQLREADIVKIVDTYRARNGVDKYAR 444 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ + P + + + L Q + + + + Sbjct: 445 VVPLDEIAANDYNLNIPRYVDTSEEAEPIDLGAVQTEINALESQWQQQRQKMAEYLRE 502 >gi|113866035|ref|YP_724524.1| Type I restriction-modification system methylation subunit [Ralstonia eutropha H16] gi|113524811|emb|CAJ91156.1| Type I restriction-modification system methylation subunit [Ralstonia eutropha H16] Length = 835 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 108/497 (21%), Positives = 188/497 (37%), Gaps = 65/497 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------L 60 + L ++K A+ L G ++F + I L+R + R V + Sbjct: 4 TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVIAERMNAGESR 63 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASF---SDNAKAI 114 A + +LE + K A Y F+ L N ++L ++ + + Sbjct: 64 ANAEKSAELERWYKGAEY-FWVPPRSRYKFLLDEAHQNVGDSLNKALSGIETANTKLYDV 122 Query: 115 FEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSE 172 E DF+ + + + + L ++ +F L + + YE+LI F + Sbjct: 123 LEHIDFTRKVGQSKIPDIKLRQLITHFGIYRLRNEDFEFPDLLGAAYEYLIGEFADSAGK 182 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TPR VV + L+ P + +YDP CG+GG L A ++ + G Sbjct: 183 KGGEFYTPRSVVRMMVRLI----------QPTLAHDIYDPCCGSGGMLIAAKEYIDEHGE 232 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 + GQE ++ ML+ + + N+Q TL++ Sbjct: 233 DGRK---ANLFGQEFNGTVWSIAKMNMLLHGI-------STANLQNEDTLAEPQHVEGGE 282 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVE--KEHKNGELGRFGPGLPK--ISDGSMLFLMHLAN 344 F L+NPPF W + + RF G ++FL H+ Sbjct: 283 LMHFDRVLTNPPFSINWGNTEKNADGTPAWSPKFPERFRYGQVPLGAKKADLMFLQHMLA 342 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 GG A V+ LF G E IR ++E+DL+EA++ + +LF+ T I Sbjct: 343 ----VTRDGGMVATVMPHGVLFRGGE---EKAIRAGIVEDDLLEAVLGVAPNLFYGTGIP 395 Query: 405 TYLWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + +L R K ERRGKV INA + G+ + + + +I+ Sbjct: 396 ACILVLRQRVQNGANRVSGKPAERRGKVLFINADREFFE----GRAQNHLLPEHIEKIVT 451 Query: 455 IYVSRENGK-FSRMLDY 470 + + + FS ++D Sbjct: 452 TFNEFKQVEGFSAIVDN 468 >gi|261368369|ref|ZP_05981252.1| type I restriction-modification system, M subunit [Subdoligranulum variabile DSM 15176] gi|282569612|gb|EFB75147.1| type I restriction-modification system, M subunit [Subdoligranulum variabile DSM 15176] Length = 509 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 108/493 (21%), Positives = 182/493 (36%), Gaps = 67/493 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W + G + + IL ++ L + R ++Y Sbjct: 2 TTRNDIEQVLWSACDSFRGKIDSSRYKDYILSMLFVKYLSDVSKEKRQEYIQQYE----- 56 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------SDNAKAIFED 117 ++ F E + L + + + I S + +F Sbjct: 57 GDMRRVERAMSRERFAMDEESTFDYLYDHRSESQIGQMINVALSRIEEYNSGKLRNVFRA 116 Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEG 173 DF+S + EK L + ++F ++L P ++ + YE++I F S+ + Sbjct: 117 IDFNSQVDFGEVKEKNATLRNLLEDFHKLDLRPSQLGSADIIGDAYEYMIAMFASDAGKK 176 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP V L +L+ P +YDPTCG+GG L A V Sbjct: 177 GGEFFTPSQVSELVASLV----------KPKENDRIYDPTCGSGGLLLKAYKKV------ 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289 + +GQEL +T A+C M + ++ I QG TLS Sbjct: 221 --PSGKVAIYGQELNAQTWALCTMNMFLHGVD-------DARIWQGDTLSNPQNIENDKL 271 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKE----------HKNGELGRFGPGLPKISDGSMLFL 339 +F ++NPPF + E + RF G+P S G F+ Sbjct: 272 MKFQVVVANPPFSLDKWDSGFLTDVEADSKGKKKMTAELDPYHRFDWGVPPTSKGDYAFV 331 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H+ L GR AIVL LF G E +IRR L+E +L++A++ LP +LF+ Sbjct: 332 LHMLASL---DAENGRMAIVLPHGVLFRGA---SEGKIRRQLVEMNLLDAVIGLPANLFY 385 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I + + + + V I+A+ + GK + I+ D +I+ Y Sbjct: 386 GTGIPACILVFKKNRPQR---DVLFIDASGEGNFEK--GKNQNILRDTDIARIVSTYEKW 440 Query: 460 ENGKFSRMLDYRT 472 E L Sbjct: 441 ETVDKYSYLASLD 453 >gi|160894140|ref|ZP_02074918.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50] gi|156864173|gb|EDO57604.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50] Length = 500 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 103/539 (19%), Positives = 189/539 (35%), Gaps = 60/539 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + IW A L G+ +++ V+L L+ + + + E+ Sbjct: 1 MADKNTANIGFEKQIWDAACVLRGNMDASEYKNVVLGLIFLKYISDRFDDKYQELVEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + + F+ + S + + +N I + K Sbjct: 59 ---GDGFEEDIDEYTSEGIFFVPAGARWSEIAAKAHTPEIGTVIDNAMRAIEKENKRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I++ ++ YE+ + F + + Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP VV +L +YDP CG+GG + + + + Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------KPFKGRVYDPCCGSGGMFVQSAKFIENHSGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQ+ P T + + IR +E D + T D R Sbjct: 221 I---SNISIYGQDSNPTTWKMAQMNLAIRGIEPDLGTYAA------DTFLDDRHPTLRAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y ++NPPF K E R+ G+P + + +L H+ L Sbjct: 272 YIMANPPFNLSDWGLD-------KLKEDQRWKYGIPPAGNANFAWLQHMIYHLAPA---- 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE EIR+ ++ DL+E IVA+PT LF+ T I LW ++ + Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQ 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K ++ G+ I+A + + K R + DD ++I D Y + +G Sbjct: 379 K--KQPGRTLFIDARKMGKMVSR---KLRELTDDDIKKISDTYEAFVDG-----TLENVK 428 Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 GY + + +IL +E + L M + + Sbjct: 429 GYCAVTDTAEIEKQDYILTPGRYVGIEEQEADDEPFEEKMDRLTSELAEMFAKSHELED 487 >gi|291515049|emb|CBK64259.1| Type I restriction-modification system methyltransferase subunit [Alistipes shahii WAL 8301] Length = 517 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 107/548 (19%), Positives = 197/548 (35%), Gaps = 67/548 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + IWK A+ + G+ +++ V+L L+ + E + + Sbjct: 1 MAAMNTADIGFEKEIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFEAKYQQLVAEGE 60 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDN 110 F + S G FY +E + +N I + Sbjct: 61 GFEEDKDEYLSNKNEKGSYDPVFYVPAEARWEAIAIHAHSPEIGTIIDNAMRAIEKENKR 120 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 K I + + L ++ F+ I +H ++ YE+ + +F Sbjct: 121 LKDILPKNFARPELDK----RRLGEVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAE 176 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V +L P R +YDP CG+GG + + + Sbjct: 177 GKLAGEFYTPACIVKTLVNVL----------QPYKGR-VYDPCCGSGGMFVQSAQFIENH 225 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + + +GQ+ P T + + IR +E+D + + T D Sbjct: 226 SGNIN---NISVYGQDSNPTTWKMAQMNLAIRGIEADLGQYNA------DTFFNDCHPTL 276 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + ++NPPF K + R+ G P + + ++ H+ + L Sbjct: 277 KADFVMANPPFNLSDWGAD-------KLADDVRWKYGTPPNGNANFAWIQHIIHHLAPT- 328 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GRA +VL++ L GE EIRR L+E DL++ ++A+P LF+ T I +W Sbjct: 329 ---GRAGVVLANGSL--SSQSGGEGEIRRKLVEADLVDCVIAMPPQLFYTTQIPVSIWFF 383 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND---------DQRRQILDIYVSREN 461 + K + +GK I+A +L T + K R + D ++I D Y + Sbjct: 384 NKNKQQ--KGKTLFIDARNLGTMVTR---KLRELTDSDTVDPIKRGDIQRIADTYNAYVA 438 Query: 462 GKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 GK G+ + V + FIL + A + + L Sbjct: 439 GKL-----ENEKGFCVVTSVAEIAKQDFILTPGRYVGIAAQEEDTEPFEEKMTRLTGELS 493 Query: 521 PMMQQIYP 528 + ++ + Sbjct: 494 GLFEKSHE 501 >gi|205372127|ref|ZP_03224943.1| type I restriction-modification system DNA methylase [Bacillus coahuilensis m4-4] Length = 506 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 108/538 (20%), Positives = 198/538 (36%), Gaps = 62/538 (11%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A+ L G ++ V+L L+ + A E + + + + S E + Sbjct: 12 LWSMADKLRGSMDSGEYKNVVLGLLFLKYVSDAFEERHAEL--EADEYADSEDRDEYVM- 68 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIARL 127 F+ E S + + + I + + + + + ++ Sbjct: 69 --DNIFWVPKEARWSYIKDNAKKPEIGQIIDKAMIAIEKENASLQGVLPKDYARPALDKV 126 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L + FS ++ V+ +YE+ + +F S + +F TP VV L Sbjct: 127 ----RLGETIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPSSVVRLL 182 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 +L +YDP CG+GG + V + + +GQE Sbjct: 183 VEML-----------EPYKGRIYDPCCGSGGMFVQSEKFVEEH---QGKLGDIAVYGQES 228 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 P T +C + IR ++ + + T DL G + Y L+NPPF K Sbjct: 229 NPTTWKLCKMNLAIRGIDGNIGTHNA------DTFHNDLHKGLKADYILANPPFNIKDWG 282 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 K E R+ G P + + ++ H+ +KL G A + S N Sbjct: 283 GD-------KLREDVRWQYGTPPTGNANYAWIQHMISKLAPAGTAGFVLA---NGSMSSN 332 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR----GKVQ 423 SGE EIR+ L+E DL+E IV LP LF+ T I +W +S K++ + G++ Sbjct: 333 ---TSGEGEIRKNLIEADLVECIVTLPGQLFYSTQIPVCIWFVSKNKSKTGKRTRNGEIL 389 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 I+A L + K D +I + + D + G+ + +L Sbjct: 390 FIDARKLGFMVDRTHK---EFTDVDIEKITKAFHTWRGTLGEAYEDVQ--GFCKAAMLEE 444 Query: 484 LRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +R + +IL LE + ++ + + + +Q E ++ ++ Sbjct: 445 VRNNDYILTPGRYVGLEE---VEDDTEPFEAKIVRLTTELSEQFEKSKELEDQIRRAL 499 >gi|224369050|ref|YP_002603214.1| HsdM2 [Desulfobacterium autotrophicum HRM2] gi|223691767|gb|ACN15050.1| HsdM2 [Desulfobacterium autotrophicum HRM2] Length = 515 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 111/485 (22%), Positives = 200/485 (41%), Gaps = 60/485 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T SL ++W +A+ L G +DF I L+R + + EK Sbjct: 1 MTLDLPSLETWLWGSADILRGSIDSSDFKNYIFGLLFLKRANDVFDEENEKLVEKENWDI 60 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSD---NAKAIFEDF 118 + + + F+ T+ + N ++ +A+ + N + + Sbjct: 61 EAAASDPDY-----HKFFIPDTARWQTIIEKTENIGQAIDEALAAIEEENLNLEGVMTAV 115 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F + L A LL ++ +F+ L D ++ + YE+LI+ F + + +F Sbjct: 116 HFGNK-DVLSDA-LLQRLLNHFNKYSLKNKDLYTPDLLGDAYEYLIKMFADDAGKKGGEF 173 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP+ VV L L+ P ++YDPTCG+GG L ++ ++A+ G Sbjct: 174 YTPKGVVRLIVQLI----------KPEPKNSVYDPTCGSGGMLVESARYIAEQGGKVGEL 223 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRF 292 GQE T A+C M++ +I++G TLS F Sbjct: 224 LDASLFGQEKNLGTWAICKINMILHN-------YSDADIKKGCTLSTPKHSTSDGELMIF 276 Query: 293 HYCLSNPPFGKKWEKDKDAVE--------------KEHKNGELGRFGPGLPKISDGSMLF 338 ++NPPF + D V+ + + GRF G+P + F Sbjct: 277 DRVIANPPFSQNKWWDAAEVDVKVNGNGKEMAVNYSKAVSDPYGRFQYGVPPRGYADLAF 336 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L H+ + L N G+ IVL LF G E +IR+ +L++D++EA+V LP+ LF Sbjct: 337 LQHMISVL----NQNGKLGIVLPHGVLFRGG---SEGKIRKGILKDDILEAVVGLPSKLF 389 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T I + I++ K + KV I+A+ + EGK + + ++ +++++ Y + Sbjct: 390 YNTGIPASILIVNKSKPIHLKNKVIFIDASQDY----KEGKNQNRLEEEHVKKVVEAYDA 445 Query: 459 RENGK 463 + Sbjct: 446 GQEID 450 >gi|317130967|ref|YP_004097249.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus cellulosilyticus DSM 2522] gi|315475915|gb|ADU32518.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus cellulosilyticus DSM 2522] Length = 485 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 117/461 (25%), Positives = 197/461 (42%), Gaps = 46/461 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 L +++W A L G +DF I P +R+ + E Y G + Sbjct: 2 KLEELESWLWGAANILRGPVDQSDFKSYIFPMLFFKRISDVYDEELQESMEIY----GED 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 D E + +N +G +++ + ++ IF D +S+ + Sbjct: 58 FDEEHRFIIPKGCHWNEVRSVTKNVGIK-ILSSIREIEKANPESLYGIFGDTQWSNK-DK 115 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L +L ++ ++FS L V M YE+LI++F ++ A +F TPR++V L Sbjct: 116 LTD-EILIELIEHFSQYNLGNKNVKSNTMGQAYEYLIKKFADVANKKAGEFYTPREIVKL 174 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 T LL P ++YDP CGTGG L +A++H+ D + +GQE Sbjct: 175 MTMLL----------DPEENESIYDPACGTGGMLLEAVDHLNDTSRDARTLK---LYGQE 221 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302 T ++ + + LE I + TL + F ++NPPF Sbjct: 222 KNLTTSSIARMNLFLHGLE-------DFKIVRNDTLKNPAYFEEDKLMTFDCVIANPPFS 274 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + E K+ GR G+P ++G ++ H+ +E+ GR A+VLS Sbjct: 275 LKSWGYE-----EWKDDPYGRNIAGIPPKTNGDYAWVQHMIKSMEMYT---GRMAVVLSQ 326 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 LF A E +IRR LL+ DL++ ++ L +LF+ TNI+ + K +R+GKV Sbjct: 327 GVLFRAGA---EGKIRRELLQQDLLDTVIGLAPNLFYGTNISACILFFRKDKPVDRKGKV 383 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 Q I+A+ L+ RN + + + +I +Y K Sbjct: 384 QFIDASQLFKKERN----QNTLLLEHVNEIFKLYNEYNTTK 420 >gi|15839312|ref|NP_300000.1| type I restriction-modification system DNA methylase [Xylella fastidiosa 9a5c] gi|9187843|gb|AAF85759.1|AE004078_11 type I restriction-modification system DNA methylase [Xylella fastidiosa 9a5c] Length = 424 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 119/430 (27%), Positives = 176/430 (40%), Gaps = 104/430 (24%) Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 M+ K++ G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+ Sbjct: 1 MNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFY 60 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVS 458 T IATY+W+L+N+K E RRGKVQLI+A+ + +R N GKK + +ILD+Y+ Sbjct: 61 NTGIATYIWVLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLG 120 Query: 459 R-ENGKFSRMLDYRTFGYRRIKV------------LRPLRMSFILDKTGL---------A 496 + + S+ D + FGY ++ + R + F + L Sbjct: 121 QTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEIYATHGE 180 Query: 497 RLEADITWRKLSPLHQ-------------------------------------------- 512 L + RK + Sbjct: 181 ALYTEFAKRKPAIEAWLKGEDENEDDDSDSGDDNEALAARKAVPTKRRKTLLDASTWQRD 240 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 +++ + Q + + + S K + S S A A +D A Sbjct: 241 KALMEVARRAQQALGRAVFDDHNAFCSGFDAVCKAQDERLSASEKKAIYKAVSWRDAAAL 300 Query: 573 PVTDVNG---------------------------EWIPDTNLTEYENVPYLE--SIQDYF 603 PV E+ PD+ L + E VP E I +F Sbjct: 301 PVIAKRSKLKAGDYFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQEPGGIDAFF 360 Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663 VREV PH PDA+I +VGYEI+F R+FY+ P R L DI A++ +E Q Sbjct: 361 VREVLPHAPDAWIATDK--------TQVGYEISFARYFYKPVPLRTLADIRADILALEQQ 412 Query: 664 IATLLEEMAT 673 LL ++ Sbjct: 413 TEGLLHKIVG 422 >gi|56697572|ref|YP_167940.1| type I restriction-modification system, M subunit [Ruegeria pomeroyi DSS-3] gi|56679309|gb|AAV95975.1| type I restriction-modification system, M subunit [Ruegeria pomeroyi DSS-3] Length = 900 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 192/496 (38%), Gaps = 67/496 (13%) Query: 1 MTEFTG---SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MT T + L ++ A+ L G ++F + I L+R E R + + Sbjct: 1 MTGATLAKLTLEKLERHLFAAADILRGKMDASEFKEYIFGILFLKRCSDVFEQQREKILK 60 Query: 58 KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGST---NTRNNLESYIASF- 107 + A G S + ++ A + F+ L + N N L + Sbjct: 61 EQRALGRSETEA---LQRADHPSSYTKTFFVPPVARWDRLLNDVHANVANELNKALEGLE 117 Query: 108 SDN---AKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHL 162 ++N + + +F+ + E L ++ +F+ L + + YE+L Sbjct: 118 NENHNALRGVLGHINFARKVGESEIPDERLRRLISHFNKYRLLDEDFEFPDLLGAAYEYL 177 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I F + A +F TPR VV L +L P +LYDPTCG+GG L Sbjct: 178 ISEFADSAGKKAGEFYTPRGVVQLMVRIL----------DPQGGTSLYDPTCGSGGMLNQ 227 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + L +GQE A+C +L+ + +I+ G TL Sbjct: 228 GYEYALQHDG-----RRLSLYGQEDNGAVWAICRMNLLLHGI-------PDADIRNGDTL 275 Query: 283 SKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 RF ++NPPF + + K RFG ++F Sbjct: 276 VDPKHIEDGHLMRFDRVIANPPFSQNYSKRGIQFGDRF------RFGWCPTTGKKADLMF 329 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 H+ L+ G+ A+V+ LF G E +IR LLE D IEA++ LP +LF Sbjct: 330 AQHMLASLKQT----GKMAVVMPHGVLFRGGE---ERKIRIALLEEDCIEAVIGLPQNLF 382 Query: 399 FRTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + T I + ++ + K + R+GKV INA EG+ + I+ + +I+ Y Sbjct: 383 YGTGIPACILVMRHPDGKPDARKGKVLFINADREH----REGRAQNFIDPEHIEKIVSAY 438 Query: 457 VSRENGK-FSRMLDYR 471 + + F+ ++D Sbjct: 439 DAFADVPGFAAVIDNT 454 >gi|291288454|ref|YP_003505270.1| Site-specific DNA-methyltransferase (adenine- specific) [Denitrovibrio acetiphilus DSM 12809] gi|290885614|gb|ADD69314.1| Site-specific DNA-methyltransferase (adenine- specific) [Denitrovibrio acetiphilus DSM 12809] Length = 525 Score = 339 bits (870), Expect = 8e-91, Method: Composition-based stats. Identities = 108/568 (19%), Positives = 203/568 (35%), Gaps = 74/568 (13%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + GSA + +W+ A+ L G+ +++ V+L L+ + + + + Sbjct: 1 MAKQNGSANIGFEDKLWQTADKLRGNMDASEYKHVVLGLIFLKYISDSFQAKYDELLATQ 60 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAK 112 + ++ F+ +E +L + L+ I + K Sbjct: 61 E--TDYTDPEDRDEYMSDNVFWVPAEARWESLIAKAKTPEIGKVLDDAMIAIEKENKTLK 118 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171 I I + L ++ I L ++ +YE+ I F S+ Sbjct: 119 NILPKTYSRPEIDK----SRLGELLDIIGSIPLIDKAQSSKDLLGRVYEYFIGMFASKEG 174 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +F TP+ VV L ++ +YDP CG+GG + + G Sbjct: 175 RSGGEFYTPQSVVQLLVEMI-----------EPYKGRVYDPCCGSGGMFVQSEKFAEEHG 223 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + +GQE T + + IR +E++ + T + DL + Sbjct: 224 GRLR---DISVYGQEYNATTWRLAKMNLAIRGIEANLGA------EWADTFTNDLHKDLK 274 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF +K R+ G P ++ + ++ H + L Sbjct: 275 SDFILANPPFNMSDWGG-------NKLKNDVRWKYGTPPDNNANYAWIQHFIHHLAP--- 324 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A VL++ + SGE EIR+ ++E DL++ ++ALP LF+ T I LW L+ Sbjct: 325 -NGVAGFVLANGSM--SSNTSGEGEIRKNIIEADLVDCMIALPGQLFYTTQIPVCLWFLA 381 Query: 412 NRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------- 460 K ER+G+ I+A + R++ + ++I Y + Sbjct: 382 RNKGKNGHRERKGETLFIDARKMGRLEDRV---HRVLVPEDIQKIASTYHAWRSNPDVIA 438 Query: 461 -NGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 GK S G+ + + + ++L E + + Sbjct: 439 SEGKQSYE---DVAGFCKSVTLDTIKEHDYVLTPGRYVGAEEV-------EDDGEPFDEK 488 Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546 +K + Q+Y + IK N AK Sbjct: 489 MKRLSTQLYSQMTEGEKLDAVIKENLAK 516 >gi|86742693|ref|YP_483093.1| N-6 DNA methylase [Frankia sp. CcI3] gi|86569555|gb|ABD13364.1| N-6 DNA methylase [Frankia sp. CcI3] Length = 816 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 108/473 (22%), Positives = 185/473 (39%), Gaps = 55/473 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L ++ A+ L G ++F + I L+R E + + +A G S Sbjct: 52 TLPQLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEKRIIAQLIADGRSR 111 Query: 67 IDLES---FVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASF----SDNAKAIFE 116 D E G + Y + + L N + L + S + + + Sbjct: 112 TDAERQATLRARYGDTLYVPEKARWAWLRDQIHHNVGDALNKALELLEHHNSTALEGVVQ 171 Query: 117 DFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGA 174 DF+ T+ + L + +F+ + L + + YE+LI F + Sbjct: 172 HIDFTRTVGQSSIPDRKLRDLIAHFNTVRLRNEDFEFPDLLGAAYEYLIGEFADSAGKKG 231 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VV + AL+ P +YDP G+GG L A + VA+ G Sbjct: 232 GEFYTPRAVVRMMVALV----------DPKPGMEVYDPCSGSGGMLILARDWVAEHGGD- 280 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 P L GQE ++ +L+ + +I+ G TL++ + + Sbjct: 281 --PRNLRLVGQEYNGGVWSISKMNLLLHGI-------PDADIRNGDTLAEPMHVSSGELE 331 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF LSNPPF + + ++ E R+G ++F+ H+ L Sbjct: 332 RFDRVLSNPPFSQNYSREGMDRENRF------RWGWAPEGGKKADLMFVQHMVAVLR--- 382 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G AA V+ LF G E +IR LL++D+IEA++ L +LF+ T I + +L Sbjct: 383 -ANGVAATVMPHGVLFRGGT---ERDIRTALLDDDVIEAVIGLAPNLFYGTGIPACVLVL 438 Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 K ER GKV +NA + G+ + + + +I+ Y + Sbjct: 439 RAPGSKPAERAGKVLFVNADAEF----RAGRAQNYLMPEHVEKIVAAYHGFTD 487 >gi|160903325|ref|YP_001568906.1| N-6 DNA methylase [Petrotoga mobilis SJ95] gi|160360969|gb|ABX32583.1| N-6 DNA methylase [Petrotoga mobilis SJ95] Length = 511 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 116/547 (21%), Positives = 224/547 (40%), Gaps = 53/547 (9%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + +L N++W+ A + G + ILP L+RL E + E Sbjct: 1 MAQNNLDTKTLENWLWEAACKIRGPIDAPKYKDYILPLIFLKRLSDVFE---DELNELSE 57 Query: 61 AFGGSNIDLESFVKVAGY-SFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDNAKAI 114 FG E G FY E S + +TN L IA ++ + + Sbjct: 58 KFGSLETAEEFSRIDPGLVRFYLPPEARWSEVAKKTTNVGEYLTDAVRTIARYNPKLQGV 117 Query: 115 FEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + DF++T R+ +L + L V ++ YE+L+R+F + Sbjct: 118 IDIVDFNATAGGQRIISDDVLVALIDVLGRHRLGLKDVDPDILGRAYEYLLRKFAEGSGQ 177 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP +V L + +L P +YDP CG+GG L A + S Sbjct: 178 SAGEFYTPGEVAILMSKIL----------DPKPGNEVYDPCCGSGGLLIKAHLRFKEKYS 227 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----- 287 + L +GQE+ T+A+ + I +E I G T+++ F Sbjct: 228 EDRTKEPLKFYGQEILHSTYAMAKMNIFIHDME--------AQIALGDTMNRPAFTTSEG 279 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 K+F +NP + + + + ++N RF G P + ++ H+ L+ Sbjct: 280 PLKKFDLVTANPMWNQTFSQSV------YENDPYNRFVFGYPPSNSADWGWIQHMFASLK 333 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 G+ A+V+ + + G G E +IR+ +E DL+E+++ LP +LF+ T+ Sbjct: 334 ND----GKMALVIDTGAVSRGSGNVGKNRERDIRKEFVEKDLVESVLLLPENLFYNTSAP 389 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463 + +++ K +R+ ++ LINA+ L+ G+ + + D+ +I +IY++ + + Sbjct: 390 GVIIVINKLKPAQRQDQILLINASKLYEK----GRPKNFLPDESVERIAEIYLNWKEEEG 445 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 S+++ + P R + LE + K + + + L+ ++ Sbjct: 446 ISKIISKEEAAKNDYNL-SPSRYVAQNGEDETLPLEDAVVQLKEAEEERKEADEKLEIIL 504 Query: 524 QQIYPYG 530 +++ + Sbjct: 505 KEMGLWN 511 >gi|253577074|ref|ZP_04854396.1| type I restriction-modification system DNA methylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843568|gb|EES71594.1| type I restriction-modification system DNA methylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 507 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 104/539 (19%), Positives = 197/539 (36%), Gaps = 61/539 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W A+ L G ++ V+L L+ + A E A++ + + Sbjct: 11 KLWSMADKLRGSMDAAEYKHVVLGLLFLKYVSDAFEEKYEALKNE-----PYADPEDRDE 65 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSSTIAR 126 VA F+ E S + + +N I + + K + + + Sbjct: 66 YVAENIFWVPKEARWSHIKDNAKKPEIGQTIDNAMIAIEKENPSLKGVLPKDYARPALDK 125 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L ++ FS ++ V+ +YE+ + +F S + +F TP VV L Sbjct: 126 ----TRLGEVIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPNSVVRL 181 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V + + +GQE Sbjct: 182 LVEMI-----------QPFKGRVYDPCCGSGGMFVQSEKFVEEHQGRIG---DIAIYGQE 227 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T +C + IR ++ + T DL + Y L+NPPF Sbjct: 228 SNPTTWKLCKMNLAIRGIDGNLGEH------HADTFHNDLHKNLKADYILANPPFNISDW 281 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + E R+ G+P + + ++ H+ NKL G A VL++ + Sbjct: 282 GGE-------RLTEDARWTYGVPPAGNANYAWIQHIVNKLAPS----GVAGFVLANGSMS 330 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 + E EIR L+ DL++ IV LP LF+ T I LW ++ K +RRG++ Sbjct: 331 TS--TTAEFEIRSKLVNADLVDCIVTLPGQLFYSTQIPVCLWFIAKNKAPKGFRDRRGEI 388 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-IKVL 481 I+A + + R ++ + R+I D Y + + + G+ + ++ Sbjct: 389 LFIDARKMGHMVDRT---HRELSTEDIRKIADTYHAWRGQAEAGTYEDV-KGFCKAAELA 444 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL +E + S + + + +Q E +++ + Sbjct: 445 EVQEHEYILTPGRYVGIED---VEEDSEPFEDKMARLTAELGEQFAKSRQLEDEIRKRL 500 >gi|328951821|ref|YP_004369155.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfobacca acetoxidans DSM 11109] gi|328452145|gb|AEB07974.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 116/467 (24%), Positives = 189/467 (40%), Gaps = 54/467 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +++W A L G D+ + I P +RL + E +A S Sbjct: 5 TQQQLESYLWGAATLLRGTIDAGDYKQFIFPLLFYKRLCDVFDE------ETQVALTESG 58 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFS----DNAKAIFEDFDF 120 D E + F E + + L + + S D IF D + Sbjct: 59 GDTEFAAYPENHRFQIPPEAHWQEMRQVAKDVGRTLHNALRSIETANPDKLYGIFGDAQW 118 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL A +L + ++F+ + L +P+ + YE+LI++F + A +F T Sbjct: 119 TNK-DRLPDA-MLRDLIEHFATLNLSLANLPEDELGQGYEYLIKKFADDSGHTAAEFYTN 176 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R +VHL T +L +P ++YDPTCG+GG L + H+ G + + Sbjct: 177 RTLVHLMTEML----------APQPGESVYDPTCGSGGMLLSCIAHLRRQGQEWR---NV 223 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE T A+ + +E +I +G TL+ F +RF L Sbjct: 224 RLYGQERNLMTSAIARMNCFLHGVE-------DFHIVRGDTLAHPRFVEGDRLQRFDVVL 276 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K K GR G P F H+ L GR Sbjct: 277 ANPPYSIKQWN-----RKAFAADPWGRNLFGTPPQGRADYAFWQHILCSLSPQT---GRC 328 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF E+E+RR ++E DLIE ++ L +LF+ + + + + K Sbjct: 329 AILFPHGVLFR----QEEAEMRRKIIEADLIECVLGLGPNLFYNSPMEACVVVCRMAKPR 384 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 ERRGK+ LINA + T R + + D + IL Y + ++ Sbjct: 385 ERRGKILLINAVNEVTRERA----QSFLTDTHIQHILHAYQTFQDEP 427 >gi|257080965|ref|ZP_05575326.1| HsdM protein [Enterococcus faecalis E1Sol] gi|256988995|gb|EEU76297.1| HsdM protein [Enterococcus faecalis E1Sol] Length = 507 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 100/524 (19%), Positives = 190/524 (36%), Gaps = 58/524 (11%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 + + +W A+ L G +++ V+L L+ + + E + + + Sbjct: 7 KIEDKLWAAADKLRGSMDASEYKNVVLGLIFLKYVSDSFEEKYEELTK--DEYADPEDKD 64 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122 E A F+ +E + + I + + K + Sbjct: 65 EYL---ADNIFWVPAEARWEKINRDAKTPKIGETIDEAMIAIEKENPSLKNVLPKNYSRP 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L + + I++ + + YE+ + +F S +G +F TPR Sbjct: 122 QLDK----TRLGETVDLITNIKVGDSENRKTDTLGRTYEYFLGKFASAEGKGGGEFYTPR 177 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L +L +YDP CG+GG + V + Sbjct: 178 SVVSLLVEML-----------EPYKGRIYDPCCGSGGMFIQSEKFVEKHQGKIG---DIS 223 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQE P T +C + IR ++ + + T DL G R Y L+NPPF Sbjct: 224 VYGQEFNPTTWQLCKMNLAIRGIDGNIGTHNA------DTFQNDLHKGLRADYILANPPF 277 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + K E R+ G+P ++ + ++ H+ +KL G A VL+ Sbjct: 278 NISDWGQE-------KLLEDSRWKYGIPPKNNANYAWIQHMVSKLAPE----GTAGFVLA 326 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE---- 417 + + E EIR+ L++NDL+E IV LP+ +F+ T I LW ++ K ++ Sbjct: 327 NGSMSTSTKE--EFEIRKNLIKNDLVECIVTLPSQMFYSTQIPVCLWFVTKSKAKKNERN 384 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +G++ I+A + K +++ +++ D Y + + + D F Sbjct: 385 HQGEILFIDARNEGFMADRTTK---EFSEEDIKKVADAYHAWKGTNDKKYTDVAGFCSSA 441 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 + +IL LE + + +L Sbjct: 442 -SLETVKEQDYILTPGRYVGLEDKVEDSEPFEEKMERLTTLLSE 484 >gi|319951306|ref|ZP_08025140.1| putative type I restriction/modification system DNA methylase [Dietzia cinnamea P4] gi|319435021|gb|EFV90307.1| putative type I restriction/modification system DNA methylase [Dietzia cinnamea P4] Length = 535 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 109/553 (19%), Positives = 210/553 (37%), Gaps = 70/553 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + L + +WK A+ L G + + V+L L+ + A E R A+RE+ Sbjct: 8 MPMEASTPKELKDTLWKAADKLRGSMDASQYKDVVLGLVFLKYVSDAFEERRDAIREEL- 66 Query: 61 AFGGSNIDLESFVKVAGY----SFYNTSEYSLSTL---------GSTNTRNNLESYIASF 107 + E+ Y F+ +E L STN ++ I + Sbjct: 67 SGEDEAYLAETLEDADEYLGSGVFWVPAEARWEYLSRHAKGIPASSTNDAQSIGELIDAA 126 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYE 160 E T+ L + L ++ F+ ++ +YE Sbjct: 127 MRALMQANES--LVGTLPVLFGRDNVEQRRLGELVDLFNAARFTGGGASKARDLLGEVYE 184 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + + +F + +F TP VV +L +YDP CG+GG Sbjct: 185 YFLDKFAKAEGKRGGEFYTPPVVVRTLVEIL-----------EPHSGRVYDPCCGSGGMF 233 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + H + P + +GQEL T + + I ++S + G Sbjct: 234 VQTEKFLE---GHKEDPTNVAVYGQELNERTWRMAKMNLAIHGIDSQGLGS-----RWGD 285 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 T ++D+ + Y ++NPPF ++ + + R+ G+P + + ++ Sbjct: 286 TFARDIHPDMQADYVMANPPFN---------IKDWARREDDPRWVYGVPPKRNANYAWMQ 336 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H+ +KL G A +V+++ + SGE +IR+ ++E D+++ IVALP LF Sbjct: 337 HILSKLAP----NGEAGVVMANGTMTTS--TSGEGDIRKAMVEGDVVQCIVALPGQLFRA 390 Query: 401 TNIATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 T I +W + KT +RRG+V I+A +L I R ++++ ++I + Sbjct: 391 TGIPVCVWFFAKNKTAGKGGSVDRRGQVLFIDARELGHMIDRVE---RTLSEEDLQRIAE 447 Query: 455 IYVSRENGKFSRMLDYRTF-GYRRI-KVLRPLRMSFILDKTGLARL-EADITWRKLSPLH 511 + S G+ S + +Y G+ + + + L + EA+ + Sbjct: 448 TFRSWR-GRPSAVGEYEDVPGFCKSATLEEIKAAGYALTPGRYVGVPEAEEDLEPIDEKI 506 Query: 512 QSFWLDILKPMMQ 524 ++ + + Sbjct: 507 ARLTGELTAALDE 519 >gi|78358466|ref|YP_389915.1| type I restriction-modification system methylation subunit-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220871|gb|ABB40220.1| type I restriction-modification system methylation subunit-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 504 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 115/529 (21%), Positives = 198/529 (37%), Gaps = 55/529 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + L +++W A L G D+ + I P +RL + E A S Sbjct: 8 SQSELESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 61 Query: 67 IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 D E + F + ++ L + + D +F D + Sbjct: 62 GDQEYAALPEQHRFQIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 121 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL +L ++ ++FS L P+ + YE LI++F + A +F T Sbjct: 122 TNK-DRLPDR-MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 179 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T +L P ++YDPTCG+ G L A+ H+ + L Sbjct: 180 RTVVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 226 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 GQE T A+ + + +E I +G TL+ F +F L Sbjct: 227 RLFGQERNLLTSAIGRMNLFLHGIE-------DFRIVRGDTLANPAFVEGDRLMQFDVVL 279 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K GR G P F H+ ++ GR Sbjct: 280 ANPPYSIKQWD-----RDAWSADPWGRNIYGTPPQGRADYAFWQHIIKSMKAKS---GRC 331 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF ES +R L+ +D++E ++ L +LF+ + + + I K + Sbjct: 332 AILFPHGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 387 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY 475 ERR KV INA + T R + + DD ++I+ Y + + F+R++ Sbjct: 388 ERRNKVLFINAVNEVTRERA----QSFLTDDHIQRIVAAYQAFGDEDGFARVVGNDEIRE 443 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + PL + ++ ++ Q + + + M Sbjct: 444 KASNLSIPLYVRAENGNGNGNGSTETVSLKQAIANWQESSMALRESMDG 492 >gi|71275992|ref|ZP_00652274.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Dixon] gi|71899062|ref|ZP_00681227.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] gi|71163225|gb|EAO12945.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Dixon] gi|71731175|gb|EAO33241.1| N-6 DNA methylase:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] Length = 524 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 109/574 (18%), Positives = 221/574 (38%), Gaps = 74/574 (12%) Query: 1 MTEFTGSAAS-------LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 M + + ++K A+ L G+ + +D+ V L L+ + A E S Sbjct: 1 MAHRKTTTKNGNGGTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHS 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107 + + + E F+ + S L + ++ + + I Sbjct: 61 ELLAE--DPQAAEDKDEYLAH---NVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEK 115 Query: 108 -SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRR 165 + + K + + ++ +L ++ SGI L+ + ++ +YE+ + + Sbjct: 116 DNPSLKHVLPKDYARPALNKV----MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQ 171 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + +F TPR VV + +L +YDP CG+GG + Sbjct: 172 FAGAEGKRGGEFYTPRSVVRVLVQML-----------EPYSGRVYDPCCGSGGMFVQSEK 220 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLS 283 V + G + +GQE T + + +R ++SD I+ + + Sbjct: 221 FVLEHGGRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFH 269 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D + Y L+NPPF + E R+ G+P + + +L H+ Sbjct: 270 NDALRDLKADYILANPPFNISDWGGD-------RLREDVRWKFGVPPAGNANYAWLQHIY 322 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + L G A +VL++ + SGE EIR ++E D+++ +VA+P LF+ T I Sbjct: 323 HHLAP----NGTAGVVLANGSM--SSNHSGEGEIRTHMIEADIVDCMVAMPGQLFYSTQI 376 Query: 404 ATYLWILSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW L+ K +RRG+V L++A L + RR + D+Q ++I D Y + Sbjct: 377 PACLWFLARNKNPGKGLRDRRGQVLLMDARALGVLVDRT---RRELTDEQIQKIADTYHA 433 Query: 459 RENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 + + G+ + + + ++L + + K + + Sbjct: 434 WRGEQGAADYADVA-GFCKSATLEDIRKHGYVLTPGRYVGI---KGFVKDNESFEERMTR 489 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 + + +Q+ ++ ++E +K L++K Sbjct: 490 LTTELGEQLAESATFQTTMREQLKLIGFPILELK 523 >gi|163737287|ref|ZP_02144705.1| Type I restriction-modification system methylation subunit [Phaeobacter gallaeciensis BS107] gi|161389891|gb|EDQ14242.1| Type I restriction-modification system methylation subunit [Phaeobacter gallaeciensis BS107] Length = 821 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 108/494 (21%), Positives = 188/494 (38%), Gaps = 62/494 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLA 61 + A L ++ A+ L G ++F + I L+R E R V +K Sbjct: 4 TLAQLERHLFSAADILRGKMDASEFKEYIFGMLFLKRCSDVFEQARLEVVQKRIASGVAP 63 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIAS-FSDNA--KAIF 115 + +F+ + L N + L + S+N + + Sbjct: 64 EQAAEEAENKVWYGRSGTFWVPPQSRFGHLVDEAHENIGDKLNKALGGVESENIALEGVL 123 Query: 116 EDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEG 173 + DF+ + + + + L ++ +F I L + + YE+LI F + Sbjct: 124 DHIDFTRKVGQSKISDQKLRQLINHFGEIRLRNEDFEFPDLLGAAYEYLIGEFADSAGKK 183 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VV + LL P + +YDP CG+GG L A +++ + G Sbjct: 184 GGEFYTPRSVVRMMVRLL----------KPTLEHDIYDPCCGSGGMLIAAKDYIDEHGQD 233 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289 + GQE ++ ML+ + S +++ TL + Sbjct: 234 GR---RANLFGQENSGTVWSIAKMNMLLHGIN-------SADLRNEDTLGEPQHVEDGEL 283 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEH--KNGELGRFGPGLP-KISDGSMLFLMHLANKL 346 +RF L+NPPF W E+ + RF +P ++FL H+ Sbjct: 284 RRFDRILTNPPFSINWGSKDKDRSGEYTWQPKFRERFFHEVPLGSKKADLMFLQHMLA-- 341 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GG A V+ LF G E +IR+ ++E+D +EA++ L LF+ T I Sbjct: 342 --VSRDGGMIATVMPHGVLFRGG---DEGKIRQKIIESDQVEAVIGLGPQLFYGTGIPAC 396 Query: 407 LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + +L R K ER+GKV INA + G+ + + + +I+ + Sbjct: 397 VIVLRQRVHHGANLVSGKPAERQGKVLFINADREYFE----GRAQNHLLPEHIEKIVTTF 452 Query: 457 VS-RENGKFSRMLD 469 R FS ++D Sbjct: 453 EEYRAIPGFSAIVD 466 >gi|183597752|ref|ZP_02959245.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827] gi|188023032|gb|EDU61072.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827] Length = 504 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 108/548 (19%), Positives = 201/548 (36%), Gaps = 61/548 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W + G + + IL L+ + + ++ +Y Sbjct: 1 MPHTLINQSEINKAVWNACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKVEELKAEYG 60 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 ++ +SF G SF++ E T L + I + K +F+D Sbjct: 61 DIPELIAEMLESQSFKIPTGSSFWDLYEARFEAGNGTRIDTALHA-IEEANTKLKGVFQD 119 Query: 118 FDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSE 172 F+ +K +L + ++F L+ V+ N YE+LI+ F + + Sbjct: 120 ISFNTDKLGDEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGK 179 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP +V L + +L +P T+ DP CG+G L V Sbjct: 180 SAGEFYTPAEVSDLLSIIL----------APQEGDTICDPACGSGSLLMKCGKQVQ---K 226 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290 + +GQE T ++ M + + + I+ G T+ Sbjct: 227 NFNGSKKYALYGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDANG 279 Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F +NPPF +D +N GRF G+P + G F+ H+ L+ Sbjct: 280 GLLHFDVVTANPPFSLDKWGHED-----AENDHFGRFRRGVPPKTKGDYAFISHMIETLK 334 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR +V+ LF S E +IR+ L+E +L++A++ LP LFF T I + Sbjct: 335 PQT---GRMGVVVPHGVLFR---ASSEGKIRQQLIEENLLDAVIGLPEKLFFGTGIPAAI 388 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I K ++ V I+A+ + GK + ++ ++ ++I+D Y +RE+ Sbjct: 389 LIFKKHKDDK---NVLFIDASREF----KSGKNQNVLTEENIQKIVDTYKARESVDKYAY 441 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 L + F L+ + L + + + + Sbjct: 442 LA---------TLEEIAENDFNLNIPRYVDTFEEEEEIDLMAVREERLALQNELADLEAE 492 Query: 528 PYGWAESF 535 G+ + Sbjct: 493 MEGYLKEL 500 >gi|283795955|ref|ZP_06345108.1| ribosomal protein L11 [Clostridium sp. M62/1] gi|291076600|gb|EFE13964.1| ribosomal protein L11 [Clostridium sp. M62/1] gi|295090949|emb|CBK77056.1| Type I restriction-modification system methyltransferase subunit [Clostridium cf. saccharolyticum K10] Length = 500 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 106/539 (19%), Positives = 193/539 (35%), Gaps = 60/539 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + +A IW A L G+ +++ V+L L+ + + A+ E+ Sbjct: 1 MPDKNTAAIGFEKQIWDAACVLRGNMDASEYKNVVLGLIFLKYISDRFDEKYKALVEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + + F+ + + + ++ I + K Sbjct: 59 ---GDGFEEDIDEYTSEGIFFVPAGARWRDIAAKAHTPEIGTVIDDAMRAIEKENKRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I++ ++ YE+ + F + + Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP VV +L +YDP CG+GG + V + + Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------KPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQ+ P T + + IR +E D + T KD R Sbjct: 221 I---SNISIYGQDSNPTTWKLAQMNLAIRGIEPDLGPYAA------DTFLKDCHPTLRAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y ++NPPF K E R+ G P + + +L H+ L Sbjct: 272 YIMANPPFNLSDWGLD-------KLKEDQRWKYGTPPAGNANFAWLQHMIYHLAPA---- 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE EIR+ ++ DL+E IVA+PT LF+ T I LW ++ + Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQ 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K ++ GK I+A + T + K R + D +I D Y + +G L+ Sbjct: 379 K--KQSGKTLFIDARKMGTMVNR---KLRELTDADINKISDTYEAFVDG----TLENI-K 428 Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + ++IL +E + + L M + + Sbjct: 429 GFCAVADTAEIEKQNYILTPGRYVGIEEQEEDDEPFEEKMTRLTSELSNMFAKSHELED 487 >gi|253576200|ref|ZP_04853531.1| type I restriction-modification system DNA methylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844327|gb|EES72344.1| type I restriction-modification system DNA methylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 507 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 105/539 (19%), Positives = 196/539 (36%), Gaps = 61/539 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W A+ L G ++ V L L+ + A E A++ + + Sbjct: 11 KLWSMADKLRGSMDAAEYKHVALGLLFLKYVSDAFEEKYEALKNE-----PYADPEDRDE 65 Query: 74 KVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 VA F+ E S + +N I + + K + + + Sbjct: 66 YVAENIFWVPKEARWSHIKDNAKKPEIGQIIDNAMIAIEKENPSLKGVLPKDYARPALDK 125 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L ++ FS ++ V+ +YE+ + +F S + +F TP VV L Sbjct: 126 ----TRLGEVIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPNSVVRL 181 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V + + +GQE Sbjct: 182 LVEMI-----------QPFKGRVYDPCCGSGGMFVQSEKFVEEHQGRIG---DIAVYGQE 227 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T +C + IR ++ + T DL + Y L+NPPF Sbjct: 228 SNPTTWKLCKMNLAIRGIDGNLGEH------HADTFHNDLHKNLKADYILANPPFNISDW 281 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + R+ G+P + + ++ H+ NKL G A VL++ + Sbjct: 282 GGE-------RLTDDTRWTYGVPPAGNANYAWIQHIVNKLAPS----GVAGFVLANGSMS 330 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 + E EIR L+ DL++ IV LP LF+ T I LW ++ K +RRG++ Sbjct: 331 TS--TTAEFEIRSKLVNADLVDCIVTLPGQLFYSTQIPVCLWFIAKNKAPKGFRDRRGEI 388 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVL 481 I+A + + R ++ + R+I D Y + + D + F + K+ Sbjct: 389 LFIDARKMGHMVDRT---HRELSTEDIRKIADTYHAWRGQAEVGAYEDVKGFC-KAAKLA 444 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL +E + S + + + + +Q E +++ + Sbjct: 445 DVQEHEYILTPGRYVGIED---VEEDSEPFEDKMARLTEELAEQFAKSRQLEDEIRKRL 500 >gi|189467605|ref|ZP_03016390.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM 17393] gi|189435869|gb|EDV04854.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM 17393] Length = 507 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 109/539 (20%), Positives = 201/539 (37%), Gaps = 70/539 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + IWK A+ L G+ +++ V+L L+ + E A+ ++ Sbjct: 1 MAKTNTAEIGFEKDIWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFEAKYQALIDE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + + F+ E S + +N I + K Sbjct: 59 ---GDGFEEDKDEYTSENIFFVPQEARWSMIAKAAHAPEIGTVIDNAMRLIEKENTRLKG 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I++ ++ YE+ + +F + Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKL 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP +V +L +YDP CG+GG + + + Sbjct: 172 AGEFYTPACIVRTLVEVL-----------QPYSGRVYDPACGSGGMFVQSAKFIERHQGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + GQ+ P T + + IR +E+D + + T D + Sbjct: 221 IN---NISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFDDQHPTLKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF K + R+ G+P + + +L H+ + L Sbjct: 272 YILANPPFNLSDWGVD-------KLQDDVRWKFGIPPAGNANFAWLQHMIHHLSPK---- 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE +IR +++ DLIE IVALP+ LF+ T I LW L+ Sbjct: 321 GRIGMVLANGSL--SSQSGGEGKIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNRA 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND------DQRRQILDIYVSRENGKFSRM 467 K ++ GK+ ++A ++ T + K R ++D ++I D + + G Sbjct: 379 K--KQTGKILFVDARNMGTMVTR---KLRELSDSEEGEKGDIQKIADTFHAFNEG----T 429 Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTG---LARLEAD-ITWRKLSPLHQSFWLDILKP 521 LD G+ I + + +IL +A +E D +++ S D+ Sbjct: 430 LDN-EKGFCAIATLEDVAKQDYILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLFAQ 487 >gi|307150615|ref|YP_003885999.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822] gi|306980843|gb|ADN12724.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece sp. PCC 7822] Length = 526 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 106/543 (19%), Positives = 185/543 (34%), Gaps = 69/543 (12%) Query: 2 TEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 TE T S + L + +WK A+ L G ++ V+L L+ + A + Sbjct: 7 TETTASNGNTVKLEDKLWKAADKLRGHLDAAEYKHVVLGLIFLKYISDAFGELYDKL--- 63 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 + + A + F+ E S L + ++ I + + Sbjct: 64 --STDEYADPEDKDEYTAEHIFWVPVEARWSHLQAKAKTPDIGKFVDEAMEAIEKENPSL 121 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEV 170 K + + + LL ++ I L ++ +YE+ + +F S Sbjct: 122 KGVLPKDYGKPALDK----RLLGELIDLIGTIGLGDAQNRSQDILGRVYEYFLGQFASAE 177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TPR VV L +L +YDP CG+GG + V Sbjct: 178 GKKGGQFYTPRCVVELLVDML-----------EPYKGRVYDPCCGSGGMFVQSEKFVEAH 226 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G + +GQE P T +C + IR ++ + + + DL Sbjct: 227 GGKIG---DISIYGQESNPTTWKLCKMNLAIRGIDGNLGA------KNADSFRNDLHKEL 277 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + Y L+NPPF + E R+ G P + + + ++ + L Sbjct: 278 KADYILANPPFNVSDWGGQH-------LREDSRWIYGTPPVGNANYAWIQQIITHLAPNG 330 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G A + S N SGE EIR+ L+E DL++ +VALP LF+ T I LW L Sbjct: 331 IAGFVLA---NGSMSSN---QSGEGEIRKALVEADLVDCMVALPGQLFYNTQIPACLWFL 384 Query: 411 SNRKTEER------------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + K + +G+ I+A L I R + ++ +I + Y + Sbjct: 385 TRNKGQSPLTLLNKGGMRQRKGETLFIDARKLGVLIDRV---HRELTSEEITRIAETYHN 441 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 D F + + ++L E + + Sbjct: 442 WRGSGKGEYEDVPGFC-KSAALEDIRGHGYVLTPGRYVGAEEVDDDDEPFEEKMERLTKL 500 Query: 519 LKP 521 L+ Sbjct: 501 LEE 503 >gi|304569843|ref|NP_942538.2| hypothetical protein slr6095 [Synechocystis sp. PCC 6803] Length = 512 Score = 336 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 108/473 (22%), Positives = 184/473 (38%), Gaps = 57/473 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGG 64 + L ++K A+ L G ++F + I L+R E + Sbjct: 5 TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRASDVFEQQYQQIIRDNLAKGRSE 64 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSD---NAKAIFEDF 118 + + F+ +T+ N N L +A+ + + Sbjct: 65 EEAKQRAERASSYQDFFVPERARWATIRDELHDNVGNGLNKALAALEESNVALSGVLGHI 124 Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAED 176 DF+ + + + L ++ +F+ L + + YE+LI F + + Sbjct: 125 DFNRKVGKTTLSDTKLRELIFHFNKYRLLNEDFVFPDLLGAAYEYLIAEFADSAGKKGGE 184 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TPRDVV L L+ P ++YDP G+GG L A ++ +CG + Sbjct: 185 FYTPRDVVQLMVRLV----------KPAAGMSIYDPCVGSGGMLIQAKQYIEECGGDSR- 233 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRF 292 L GQ+ A+C ML+ ++ I+ TL +RF Sbjct: 234 --NLSLCGQDNNGGVWAICKINMLLHGIK-------DARIENEDTLQNPRHIVDGELERF 284 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLANKLELPP 350 LSNPPF + +EK RF G S ++F H+ + L++ Sbjct: 285 DRVLSNPPFSQNYEKTN--------LEFKNRFNHGWCPESGKKADLMFAQHMLSVLKV-- 334 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG A V+ LF G E +IR+ L+E D IEAI+ LP +LF+ T I + ++ Sbjct: 335 --GGIVATVMPHGVLFRGG---DEQKIRKSLIEKDQIEAIIGLPPNLFYGTGIPACILVM 389 Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 K ERRGKV INA + + G+ + + + +I++ + + + Sbjct: 390 RRAGEKLPERRGKVLFINADAEFYA----GRAQNYLKPEHIEKIVNAFEAFVD 438 >gi|167904493|ref|ZP_02491698.1| Type I restriction-modification system methylation subunit [Burkholderia pseudomallei NCTC 13177] Length = 832 Score = 336 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 102/496 (20%), Positives = 181/496 (36%), Gaps = 65/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGG 64 + L ++K A+ L G ++F + I L+R + R V E Sbjct: 4 TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVVGLEMQAGKSE 63 Query: 65 SNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-------FSDNAKAI 114 + S SF+ S+ L + N+ Y+ + + + Sbjct: 64 AEARQSAENSRWYKKEGSFWVPSQSRYEFLINDA-HQNVGDYLNKALTGIETANTSLYDV 122 Query: 115 FEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSE 172 E DF+ + + + + L ++ +F+ L + + YE+LI F + Sbjct: 123 LEHIDFTRKVGQSKIPDIKLRQLITHFAKHRLRNEDFEFPDLLGAAYEYLIGEFADSAGK 182 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TPR VV + L+ P + +YDP CG+GG L A ++ + G Sbjct: 183 KGGEFYTPRSVVRMMVRLV----------KPELKHDVYDPCCGSGGMLIAAKEYIDEHGE 232 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 + GQE ++ ML+ + + N+Q TL+ Sbjct: 233 DGRK---ANLFGQEFNGTVWSIAKMNMLLHGI-------STTNLQNDDTLADPQHVEGGE 282 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVE--KEHKNGELGRFGPGLPK--ISDGSMLFLMHLAN 344 F ++NPPF W + + RF G ++FL H+ Sbjct: 283 LMHFDRVITNPPFSLPWGNTERNTDGTPAWAPKFPERFKYGQVPLGAKKADLMFLQHMLA 342 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 GG A V+ LF G E IR ++++DL+EA++ + +LF+ T I Sbjct: 343 ----VTRDGGMVATVMPHGVLFRGGE---ERAIRAGIIDDDLLEAVIGVAPNLFYGTGIP 395 Query: 405 TYLWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + +L R K +R+GKV INA + G+ + + + +I Sbjct: 396 ACILVLRQRVQNGANRVSGKPVKRQGKVLFINADREYFE----GRAQNHLLPEHIEKIAT 451 Query: 455 IYVSRENGK-FSRMLD 469 + FS ++D Sbjct: 452 TFDEFRAVPGFSAIVD 467 >gi|302343960|ref|YP_003808489.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfarculus baarsii DSM 2075] gi|301640573|gb|ADK85895.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfarculus baarsii DSM 2075] Length = 528 Score = 336 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 117/562 (20%), Positives = 205/562 (36%), Gaps = 58/562 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + L +++W A L G D+ + I P +RL + E A S Sbjct: 3 SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 D E + F + ++ L + + D +F D + Sbjct: 57 GDQEYAALPEQHLFQIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL +L ++ ++FS L P+ + YE LI++F + A +F T Sbjct: 117 TNK-DRLPDR-MLRELIEHFSSQTLSLANCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T +L P ++YDPTCG+ G L A+ H+ + L Sbjct: 175 RTVVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 GQE T A+ + + +E I +G TL+ F +F L Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGIE-------DFRIVRGDTLANPAFVEGDRLMQFDVVL 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K GR G P F H+ ++ GR Sbjct: 275 ANPPYSIKQWD-----RDAWSADPWGRNIYGTPPQGRADYAFWQHIIKSMKAKS---GRC 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF ES +R L+ +D++E ++ L +LF+ + + + I K + Sbjct: 327 AILFPHGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY 475 ERR KV INA + T R + + +D ++I+ Y + F+R++ Sbjct: 383 ERRNKVLFINALNEVTRERA----QSFLTNDHIQRIVSAYQDFCDEDGFARVVSNDEVRE 438 Query: 476 RRIKVLRPLRMSFI---LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 + + PL + + G A + + + + + + A Sbjct: 439 KASNLSIPLYVRADNGNCNGNGAAETVSLKQAIANWQESSMALRESMDGLFEVLEKGLSA 498 Query: 533 ESFVKESIKSNEAKTLKVKASK 554 + +K++ + S Sbjct: 499 DDADGCRLKTDSENLRESAQSA 520 >gi|198284500|ref|YP_002220821.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667614|ref|YP_002427163.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249021|gb|ACH84614.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519827|gb|ACK80413.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 525 Score = 336 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 103/488 (21%), Positives = 187/488 (38%), Gaps = 67/488 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 TE T ++ SL + +W A+ L G D+ V+L L+ + + + Sbjct: 10 TEDT-TSQSLESKLWATADKLRGHLDAADYKHVVLGLIFLKYISDRFAQRHEEIIREEAG 68 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 + E A F+ + + + + + ++ I + + K I Sbjct: 69 TYAAEDRDEY---TAEGVFWVPASSRWAVVQTAAKQPDIGKRIDGAMTDIERENPHLKNI 125 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173 T+ + L ++ I L + +YE+ + RF S + Sbjct: 126 LPKGYARPTLDQ----RRLGELVDLIGTIGLGTAEHQARDTLGRVYEYFLGRFASAEGKR 181 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP VV +L +YDP CG+GG + + G Sbjct: 182 GGEFYTPASVVRTLVTMLAPYKG-----------RIYDPCCGSGGMFVQSEKFIEAHGGK 230 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +G+E P T + + + IR +E+D + + T KDL R Sbjct: 231 VG---DISVYGEESNPNTWKLALMNLAIRGIEADLGPEAA------DTFHKDLHPDLRAD 281 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF + R+ G+P + + ++ H+ + L G Sbjct: 282 YILANPPFNISDWGGD-------LLRDDKRWQYGIPPTGNANFAWVQHMVHHLAPYGIAG 334 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 A + S N SGE EIR+ L+E DL++ +VA+P LF+ T I LW L+ Sbjct: 335 FVLA---NGSMSSN---TSGEGEIRKNLIEADLVDCMVAMPGQLFYSTQIPVCLWFLAKN 388 Query: 414 KTE----------ERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE-- 460 + + ER G+V I+A ++ + + R R + D+ ++I D Y + Sbjct: 389 RDDGRGMTGKELFERTGEVLFIDARNMGFMADRT----HRELTDEDIQKIADTYHNWRGD 444 Query: 461 -NGKFSRM 467 +G+++ + Sbjct: 445 GDGEYADI 452 >gi|224538865|ref|ZP_03679404.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus DSM 14838] gi|224519519|gb|EEF88624.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus DSM 14838] Length = 528 Score = 336 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 106/539 (19%), Positives = 198/539 (36%), Gaps = 70/539 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + IWK A+ L G+ +++ V+L L+ + E A+ + Sbjct: 22 MAKTNTAEIGFEKEIWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFETKYQALIAE-- 79 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + + F+ E S + T +N I + K Sbjct: 80 ---GDGFEEDKDEYTSENIFFVPQEARWSMIAKTAHAPEIGTVIDNAMRLIEKENTRLKG 136 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I++ ++ YE+ + +F + Sbjct: 137 ILPKNFARPELDK----RRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKL 192 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP +V +L +YDP CG+GG + + + Sbjct: 193 AGEFYTPACIVRTLVEVL-----------QPYSGRVYDPACGSGGMFVQSAKFIERHQGN 241 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + GQ+ P T + + IR +E+D + + T D + Sbjct: 242 IN---SISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFDDQHPTLKAD 292 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF K R+ G+P + + +L H+ + L Sbjct: 293 YILANPPFNLSDWGVD-------KLQGDVRWKFGIPPAGNANFAWLQHMIHHLSPK---- 341 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE +IR +++ DL+E IVALP+ LF+ T I LW L+ Sbjct: 342 GRIGMVLANGSL--SSQSGGEGKIRENIIKADLVEGIVALPSQLFYTTGIPVSLWFLNRT 399 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND------DQRRQILDIYVSRENGKFSRM 467 K ++ GK+ ++A ++ T + K R ++D ++I + + + G Sbjct: 400 K--KQTGKILFVDARNMGTMVTR---KLRELSDSEEGEKGDIQKIANTFHAFNEG----- 449 Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTG---LARLEAD-ITWRKLSPLHQSFWLDILKP 521 G+ I + + +IL +A +E D +++ S D+ Sbjct: 450 TLENEKGFCAIATLEDVAKQDYILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLFAQ 508 >gi|94970784|ref|YP_592832.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345] gi|94552834|gb|ABF42758.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345] Length = 511 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 103/554 (18%), Positives = 191/554 (34%), Gaps = 59/554 (10%) Query: 5 TGSAASL-ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 G+ + + +W A+ L + ++ V+L L+ + A E + + +K Sbjct: 3 NGTISEIDEAKLWSMADALRNNMDAAEYKHVVLGLIFLKYISDAFEAKHAELEQKMDQGA 62 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFE 116 E A F+ E + L + ++ + I + + K + Sbjct: 63 DPEDPDEY---RAVSIFWVPREARWAHLKDNAPQPKIGTLVDDAMAAIERDNQSLKGVLP 119 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + L ++ SGI P ++ +YE+ + +F S + Sbjct: 120 KDYARPGLDK----QRLGQLINLVSGIGLGTPAARAKDILGRVYEYFLAQFASAEGKKGG 175 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP VV + +L +YDP CG+GG + + Sbjct: 176 QFYTPSHVVRILVEMLAPYKG-----------RVYDPCCGSGGMFVSSEKFIEAHS---G 221 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + +GQE T + + IR ++ IQ G T D + Sbjct: 222 KLGDISIYGQESNYTTWRLAKMNLAIRGID--------AQIQHGDTFHNDRHPDLKADCV 273 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPF + + E R+ G+P + + ++ H L G Sbjct: 274 LANPPFNDSDWRGE-------LLKEDKRWVFGVPPAGNANFAWIQHFIYHLAPT----GL 322 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A VL++ + SGE EIR+ ++E+DL++ +VALP LF+ T I LW ++ K+ Sbjct: 323 AGFVLANGSMSTN--TSGEGEIRKGIIESDLVDCMVALPGQLFYSTGIPVCLWFVARSKS 380 Query: 416 ----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 RRG+ I+A + I R ++D +I Y + + + Sbjct: 381 SGRFRNRRGETLFIDARKFGSLIDRV---HRELSDADVAKIAGTYHAWRGDEGAGGYADV 437 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYG 530 + + + S IL + + D L+ + + G Sbjct: 438 AGFCKAATLDDIRKHSHILTPGRYVGAKETEDDGEPIEQKMKTLTDALRMQLAESRKLEG 497 Query: 531 WAESFVKESIKSNE 544 +KE Sbjct: 498 EITGNLKEIGYELA 511 >gi|94986116|ref|YP_605480.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300] gi|94556397|gb|ABF46311.1| Type I restriction-modification system DNA methylase [Deinococcus geothermalis DSM 11300] Length = 517 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 110/561 (19%), Positives = 210/561 (37%), Gaps = 70/561 (12%) Query: 1 MTEFTGSAAS-----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + + ++ ++K A+ L G+ + +D+ V L L+ + A E A+ Sbjct: 1 MKKNGTTNSNGGNLGFEADLFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHQAL 60 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFS 108 + + +A F+ E S L + R + I + Sbjct: 61 LAE-----DPRAAEDRDEYLADNVFWVPKEARWSHLRANARRPEIGLLIDEAMRAIEKEN 115 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167 ++ K + + ++ +L ++ SGI L + ++ +YE+ + +F Sbjct: 116 ESLKGVLPKDYARPALNKV----MLGELIDLISGIALGEEGDRSKDILGRVYEYFLGQFA 171 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + +F TPR VV + +L +YDP CG+GG + V Sbjct: 172 GAEGKRGGEFYTPRSVVRVLVEML-----------EPYHGRVYDPCCGSGGMFVQSEKFV 220 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKD 285 + G + +GQE T +C + +R +++D I+ + + KD Sbjct: 221 QEHGGRIG---DIAIYGQESNYTTWRLCKMNLAVRGIDAD--------IRWNNEGSFHKD 269 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + + L+NPPF + + E R+ G+P + + + +L H+ + Sbjct: 270 ELRDLKADFILANPPFNISDWGGE-------RLREDVRWSFGVPPVGNANYAWLQHIHHH 322 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L G A +VL++ + SGE EIR+ ++E D+++ +VALP LF+ T I Sbjct: 323 LAP----NGTAGVVLANGSM--SSNQSGEGEIRKAMVEADVVDCMVALPGQLFYSTQIPA 376 Query: 406 YLWILSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 LW L+ K +RRG+V I+A L + RR + D + ++I D Y + Sbjct: 377 CLWFLARNKNPGKGLRDRRGQVLFIDARKLGVLVDRT---RRELTDAEIQKIADTYHAWR 433 Query: 461 -NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRKLSPLHQSFWLDI 518 D F + + + F+L + + Sbjct: 434 GEPDAGEYQDVPGFC-KSATLEEIRKHGFVLTPGRYVGAAQQEDDGEPFEEKMARLAAQW 492 Query: 519 LKPMMQQIYPYGWAESFVKES 539 + E+ +KE Sbjct: 493 REQRAAAAKLDAAIEANLKEL 513 >gi|88811760|ref|ZP_01127014.1| type I restriction system adenine methylase [Nitrococcus mobilis Nb-231] gi|88791151|gb|EAR22264.1| type I restriction system adenine methylase [Nitrococcus mobilis Nb-231] Length = 522 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 114/550 (20%), Positives = 210/550 (38%), Gaps = 75/550 (13%) Query: 2 TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 + +G+ +L + +W A+ L G+ + +D+ V L L+ + A E R A+ + Sbjct: 15 AQKSGNGGNLGFESMLWAAADKLRGNMEPSDYKHVALGLIFLKYISDAFEVKREALLAE- 73 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAK 112 E A F+ E S L + + + I + + + K Sbjct: 74 -DLADPEDPEEYL---AENVFWVPKEARWSHLQANAKQATIGKLVDDAMLAIEAKNASLK 129 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVS 171 + + ++ +L ++ SGI + D ++ +YE+ + F Sbjct: 130 GVLPKDYARPALNKV----MLGELIDLISGIGMGEDADRSKDILGRVYEYFLGGFAGAEG 185 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TPR VV L +L +YDP CG+GG + V + G Sbjct: 186 KRGGEFYTPRSVVQLLVEML-----------EPYKGRVYDPCCGSGGMFVQSERFVEEHG 234 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTG 289 + +GQE T +C + +R +++D I+ + + KD Sbjct: 235 GRIG---DIAIYGQESNYTTWRLCKMNLAVRGIDAD--------IRWNNEGSFHKDELKD 283 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 R Y L+NPPF + + E R+ G+P + + +L H+ + L Sbjct: 284 LRADYVLANPPFNISDWGGE-------RLREDARWKYGVPPAGNANYAWLQHIYHHLAPD 336 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G A +VL+ + SGE +IRR L+E D+++ ++ LP LF+ I LW Sbjct: 337 ----GSAGVVLAKGSM--SSTQSGEGDIRRSLVEGDVVDCMIDLPGQLFYSVQIPACLWF 390 Query: 410 LSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----- 459 L+ K +RRG++ I+A L + R+ +++ +I Y S Sbjct: 391 LARNKNPGNRWRDRRGEILFIDARKLGQMVDRT---RKEFSEEDIAKIAGSYHSWRGAGP 447 Query: 460 -ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL--HQSFW 515 E+ F + + +L P R + L + + L + Q Sbjct: 448 YEDVPGFCKAVTLDEIREHSH-ILTPGRYVGAAAEEA-DNLSFEEQFADLKEILAEQFAH 505 Query: 516 LDILKPMMQQ 525 + L ++QQ Sbjct: 506 AEELSALIQQ 515 >gi|328950634|ref|YP_004367969.1| Site-specific DNA-methyltransferase (adenine-specific) [Marinithermus hydrothermalis DSM 14884] gi|328450958|gb|AEB11859.1| Site-specific DNA-methyltransferase (adenine-specific) [Marinithermus hydrothermalis DSM 14884] Length = 524 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 116/553 (20%), Positives = 209/553 (37%), Gaps = 69/553 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 +L ++W+ A + G F ILP L+RL E + E+Y + Sbjct: 6 NTLETWLWEAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDELERLAEEYGDRETAEQI 65 Query: 69 LESFVKVAG--------YSFYNTSEYSLSTLGS---TNTRNNLESYIAS---FSDNAKAI 114 +E + G FY + + L + + + + + Sbjct: 66 IED-ERAGGTISRGRGSVRFYIPENARWPRIRAHGRAGLGQFLTDAVRAVARENPRLQGV 124 Query: 115 FEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + DF++T R+ L ++ S L V ++ YE+L+R+F + Sbjct: 125 IDLVDFNATAAGQRIVPDEYLARLVDVLSHHRLGLQDVEPDILGRAYEYLLRKFAEGQGQ 184 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TPR+V L +L P T+YDP CG+GG L + + Sbjct: 185 SAGEFYTPREVAVLMARIL----------EPEPGMTVYDPACGSGGLLIKCHLRLLETHG 234 Query: 233 HHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +GQE+ P T A+ +I +E+D I+ G T+ Sbjct: 235 EQQNGHRCLPPEHAPLQLYGQEINPATFAMARMNAVIHDMEAD--------IRLGDTMRN 286 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 F RF ++NP + + + + ++N RF G P S +L Sbjct: 287 PAFKDASGRLMRFDLVVANPMWNQIFPTEV------YENDPYERFAFGTPPASTADWGWL 340 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTD 396 H+ L + GR A+VL + + G G E +IR+ +E DLIEA+V LP + Sbjct: 341 QHMLASL----SDTGRMAVVLDTGAVSRGSGTQGSNRERDIRKAFVEADLIEAVVLLPEN 396 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T + +++ RK G++ LINA+ L+ G+ + + ++ I +Y Sbjct: 397 LFYNTTAPGIILVVNRRK--RHPGEILLINASKLFAK----GRPKNYLAEEHIETIARLY 450 Query: 457 VSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 + S ++ + P R D+ + LE + + + ++ Sbjct: 451 HEWKAEEGLSAIITNDEAARNDYNL-SPSRYVASNDQEEVLPLEEAVVLLREAEEERADA 509 Query: 516 LDILKPMMQQIYP 528 L + + Sbjct: 510 DRKLNEALHILGM 522 >gi|58583080|ref|YP_202096.1| type I restriction system adenine methylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427674|gb|AAW76711.1| type I restriction system adenine methylase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 645 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 114/547 (20%), Positives = 218/547 (39%), Gaps = 78/547 (14%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 S + L A+ +WK A+ L G+ + +D+ V+L L+ + A E +A+ + Sbjct: 133 KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 189 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 + +A F+ + S L + ++++ + I +++ K + Sbjct: 190 --DPPAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 247 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173 + ++ +L ++ SGI L+ P V+ +YE+ + +F + Sbjct: 248 LPKDYARPALNKV----MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKR 303 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VVH ++ +YDP CG+GG + V + G Sbjct: 304 GGEFYTPRSVVHTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSEKFVNEHGGR 352 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKR 291 + +GQE T +C + +R ++SD I+ + + KD + Sbjct: 353 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLK 401 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + + + R+ G P + + + +L H+ + L Sbjct: 402 ADFILANPPFNISDWGGE-------RLRDDVRWAFGPPPVGNANYAWLQHIVHHLSPH-- 452 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A +VL++ + SGE +IR+ ++E +++ +VALP LF+ T I LWIL+ Sbjct: 453 --GFAGVVLANGSM--SSQQSGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLWILA 508 Query: 412 NR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461 K +RRG++ I+A ++ T + RR ++D + +I Y + Sbjct: 509 KDRSNGLVLQSKLRDRRGEILFIDARNMGTLVDRT---RRELSDAEVARIAATYHAWRGE 565 Query: 462 GKFSRMLDYRTF-------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 D F R+ VL P R + A ++L+ L + Sbjct: 566 QDAGDYADIAGFCKSAPLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAQK-MQRLATLWRE 624 Query: 514 FWLDILK 520 + K Sbjct: 625 QQQEAAK 631 >gi|88707233|ref|ZP_01104920.1| type I restriction-modification system, M subunit [Congregibacter litoralis KT71] gi|88698526|gb|EAQ95658.1| type I restriction-modification system, M subunit [Congregibacter litoralis KT71] Length = 497 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 122/520 (23%), Positives = 214/520 (41%), Gaps = 49/520 (9%) Query: 6 GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 +++L + +W+ A L G TD+ ILP +R+ + + E + Sbjct: 2 SQSSNLKSTLWEAANTLRGSAVDRTDWKGYILPLLFFKRISDCWDEETAEASELFGDPDP 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 S +V +N + +G+ ++ ++ + D IF D+ + Sbjct: 62 SLYQEMHRFQVPEGCHWNDVRGTAQNVGA-ALKHAMQEIERANPDTLYRIFGAADWGNKE 120 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDV 183 ++ LL + + FS I+L ++V ++ + YEHL+ +F +F TPR V Sbjct: 121 KFTDE--LLKDLIEGFSSIKLGNNSVDTDILGDAYEHLVGKFADVNRRNKAGEFYTPRSV 178 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V + +L P ++YDP CGTGG L A++HV G + + Sbjct: 179 VRMMVEIL----------DPKEGESIYDPACGTGGMLLAAIDHVKRNGGDPRTFFGK-IY 227 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSN 298 GQE T +V +++ +E + + TL FT F ++N Sbjct: 228 GQEKNLTTSSVARMNLVLHGIE-------DFQVAREDTLRDPAFTDGAGGLATFDCVIAN 280 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF K + +N GR G+P S G F+ H+ + G R A+ Sbjct: 281 PPFSLKEWG-----REVWENDPWGRAQYGMPPDSYGDYAFVQHMIASM--AQGRGSRMAV 333 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VL LF S E +IR LL DLIEA++ L +LF+ T +A + IL +K ER Sbjct: 334 VLPQGALFR---KSAEGKIREVLLREDLIEAVIGLAPNLFYGTGLAGCVVILRRKKPAER 390 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---FSRMLDYRTFGY 475 + KV +I+A+ L+ G+ + ++ QI+ + + E+ + +D Sbjct: 391 KNKVLIIDASSLFRK----GRAQNFLDSKHGEQIVKWFQAFEDVEDRAKVVAVDEIKDEG 446 Query: 476 RRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLH 511 + + R P+ L +A + +T + + H Sbjct: 447 WTLNISRYVLPPIGEDIPLLPEAVAAFKEALTEARSAEDH 486 >gi|152991448|ref|YP_001357170.1| type I restriction-modification system, M subunit [Nitratiruptor sp. SB155-2] gi|151423309|dbj|BAF70813.1| type I restriction-modification system, M subunit [Nitratiruptor sp. SB155-2] Length = 510 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 191/534 (35%), Gaps = 53/534 (9%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + S +WK A+ L + ++ V+L LR + A E ++ Sbjct: 1 MAKKKQNGDSFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISEAFEDLYEK-LKRGE 59 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 + A F+ E S L +N I + + K Sbjct: 60 GEYAGADPEDIDEYRAENVFFIPPEARWSHLKEKAKDPEIGKIIDNAMELIEKKNPSLKG 119 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172 + I + L + FS I ++ ++ +++E+ + F + Sbjct: 120 VLPKVYARGNIDPIA----LGGLIDLFSNIAINEAKEKTSDILGHVFEYFLGEFALAEGK 175 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TPR VV L +L ++DP CG+GG + V + Sbjct: 176 KGGQFYTPRSVVELLVEML-----------EPYRGRVFDPCCGSGGMFVQSEKFVQEHQG 224 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + +GQE T +C + IR ++S R + + D + Sbjct: 225 KIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVRWNPEG-----SFLNDAHKDLKS 276 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF + E R+ G+P + + ++ H L Sbjct: 277 DFVIANPPFNDSDWSGE-------LLREDARWKYGVPPAGNANYAWIQHFIFHLAPH--- 326 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+A VL+ L E EIR+ ++E+D+++ IV LP LF T I LW L Sbjct: 327 -GKAGFVLAKGALTT--KQKDEYEIRKNMIEDDIVDCIVNLPAKLFLNTQIPASLWFLRK 383 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 KT +G++ I+A D+ I ++RI+ + ++I D Y + + S Sbjct: 384 NKTTR-KGQILFIDARDMGKLINR---RQRILTPEDIKKIADTYHTWQKEDSSYE---DI 436 Query: 473 FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 G+ + + V + ++L L + + + L ++++ Sbjct: 437 KGFCKSVSVDEVKGLDYVLTPGRYVGLAEEEDDFDFEERFEKLKQEFLSQLVEE 490 >gi|48243660|gb|AAT40796.1| putative type I restriction-modification system methyltransferase protein [Haemophilus influenzae] Length = 398 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 127/405 (31%), Positives = 190/405 (46%), Gaps = 53/405 (13%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 N + + + G+E ET+A+C + M+I+ D +NI+ GST Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 L+ D F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAG 371 P+ SDG +LFLM + +K++ P + G R A V + S LF G AG Sbjct: 354 PRSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAG 398 >gi|288573656|ref|ZP_06392013.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569397|gb|EFC90954.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 527 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 116/540 (21%), Positives = 203/540 (37%), Gaps = 62/540 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + L +++W A L G D+ + I P +RL + E A S Sbjct: 3 SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALKESG 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 D E + F+ + ++ L + + D +F D + Sbjct: 57 GDQEYAALPEQHRFHIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL +L ++ ++FS L P+ + YE LI++F + A +F T Sbjct: 117 TNK-DRLPDH-MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T +L P ++YDPTCG+ G L A+ H+ + L Sbjct: 175 RTVVHLMTEIL----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 GQE T A+ + + +E I +G TL F +F L Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGVE-------DFRIVRGDTLGNPAFVEGDRLMQFDVVL 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K GR G P F H+ ++ GR Sbjct: 275 ANPPYSIKQWD-----RDAWSADPWGRSLYGTPPQGRADYAFWQHIIKSMKAKS---GRC 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF E +R L+ +D++E ++ L +LF+ + + + I K + Sbjct: 327 AILFPHGVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY 475 ERR KV INA + T R + + +D ++I+ Y + + F+R++ Sbjct: 383 ERRNKVLFINAVNEVTRERA----QSFLTNDHIQRIVAAYKAFGDEDGFARVVCNDEVRE 438 Query: 476 RRIKVLRPLRMSFI-------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + + PL + ++ +A W++ S + D+ + + Q+ Sbjct: 439 KGSNLSIPLYVRSDNGNGNSNGAAETVSLKQAISNWQQSSMELRESMDDLFEVLEQRTDH 498 >gi|116754513|ref|YP_843631.1| N-6 DNA methylase [Methanosaeta thermophila PT] gi|116665964|gb|ABK14991.1| N-6 DNA methylase [Methanosaeta thermophila PT] Length = 522 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 119/550 (21%), Positives = 211/550 (38%), Gaps = 66/550 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG----- 63 ++L ++W A + G F ILP L+RL E + E++ + Sbjct: 6 STLETWLWDAACAIRGPLDAPKFKDYILPLVFLKRLSDVFEDELDRLAEEFGSRDVATRI 65 Query: 64 -GSNIDLESFVKVAGY-SFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDNAKAIFE 116 + + G FY S + +T L + + + + + + Sbjct: 66 VEDERERGTIANSRGSVRFYIPERARWSNIRKQTTGLGQYLTDAVRAVARENPRLRGVID 125 Query: 117 DFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 DF++T + L K+ S L V ++ YE+L+R+F + A Sbjct: 126 LVDFNATAAGQHIVPDEYLAKLVNVLSRHRLGLRDVEPDILGRAYEYLLRKFAEGQGQSA 185 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR+V L +L P T+YDP CG+GG L + + Sbjct: 186 GEFYTPREVAVLMARIL----------EPEPGMTVYDPACGSGGLLIKCHLRLLETRGEQ 235 Query: 235 KIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + GQE+ P T A+ +I +E+D I+ G T+ Sbjct: 236 QNGHRRLPPEHAPLRLFGQEINPTTFAMARMNAVIHDMEAD--------IRLGDTMRNPA 287 Query: 287 FTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 F F +NP + + + + ++N RF G+P S +L H Sbjct: 288 FRDATGRLMTFDLVTANPMWNQDFPTEV------YENDPYERFRFGVPPSSSADWGWLQH 341 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398 + L N GR A+VL + + G G E +IRR +ENDLIEA + LP ++F Sbjct: 342 MLASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRRAFVENDLIEAAILLPENMF 397 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++ +++ RK R G++ LINA+ L+ G+ + + D+ I +Y Sbjct: 398 YNTTAPGFIIVVNRRK--RRPGEILLINASKLFAK----GRPKNYLADEHIETIARLYHD 451 Query: 459 -RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R + ++ + P R DK + LE + + + ++ Sbjct: 452 WRAEEGLAAVITNEEAARNDYNL-SPSRYVASNDKEEVLALEDAVVLLREAEEERAQADR 510 Query: 518 ILKPMMQQIY 527 L +++ + Sbjct: 511 KLNEVLKALG 520 >gi|312876125|ref|ZP_07736113.1| type I restriction-modification system, M subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311797111|gb|EFR13452.1| type I restriction-modification system, M subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 599 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 108/487 (22%), Positives = 204/487 (41%), Gaps = 52/487 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + L ++K A+ L G +++ + I L+ E R +++++ Sbjct: 1 MAGDKITLRQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELKDRFK 60 Query: 61 AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAK 112 A G S + ++ G +F+ + + + N L +++ + Sbjct: 61 AMGFSEKQIHELLEDPSSYGDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELD 120 Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170 + + DF++ K L + +F+ +L P + YE+L++ F Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ P ++YDPT G+GGFL +A ++V + Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 G + P L +GQEL T ++C M++ + +I+ L+ +F Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIN-------DAHIENEDVLTTPMFLEN 280 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 KRF L+NPPF + + + E+ K G G ++FL H+ L Sbjct: 281 GYIKRFDRILANPPFSENYTRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G A V+ LF G E IR ++ +DLIEAI+ LP LF+ T I Sbjct: 335 KDD----GVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + +++ K E+ + K+ INA + G+ + + + +I+ ++ ++ K+S Sbjct: 388 IIVINKNKPEQLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFDEKKEIPKYS 443 Query: 466 RMLDYRT 472 R++D + Sbjct: 444 RLVDIKE 450 >gi|239994326|ref|ZP_04714850.1| hypothetical protein AmacA2_07556 [Alteromonas macleodii ATCC 27126] Length = 457 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 139/455 (30%), Positives = 204/455 (44%), Gaps = 124/455 (27%) Query: 341 HLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 HL +K+ + GGR I+L+ SPLF G AGSGESEIRR++LE DL+EAIV+LP Sbjct: 1 HLISKMRDTQSVDGVISNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVSLP 60 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQIL 453 TD+F+ T IATY+W+L+N+K +ER+GKVQLI+ ++L+ +R G KR ++DD + I Sbjct: 61 TDMFYNTGIATYVWVLTNKKKDERKGKVQLIDGSNLYGKMRKSLGSKRNQMSDDDIKTIT 120 Query: 454 DIYVSRE-----------------------------NGKFSRMLDYRTFGYRRIKVLRPL 484 + E S++ + FGYRRI + RPL Sbjct: 121 RAFGDFEVIDAREIDKPTEQKSNRGRQSANAKQEAPKTFASKIFNTYEFGYRRITIERPL 180 Query: 485 RMSFILDKTGLARLEA---------------------------------------DITWR 505 R+S + + L + Sbjct: 181 RLSSQITDEAIESLRFAPKPFNMVMPRIYSEFGSAWNEENYGDLSQVQVEVRALIKAEFS 240 Query: 506 KLSP------------LHQSFWLDILKPMMQQIYP------YGWAESFVKESIKSNEAKT 547 +L L Q ++ ++ + ++ + E + K Sbjct: 241 ELKEANIKDILSSKLWLFQKALMEKVQELQSKLADVAGGRDKRSDDFNQFEIDYNKALKA 300 Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDV----------------------NGEWIP-- 583 L +K F++A K+P A+ V D G+ + Sbjct: 301 LYIKFDAKEKKQFLDAVTTKNPDAECVVDKALKSDKKPLYGAYEYKGPVSKWKGKVVSFK 360 Query: 584 -DTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636 D +L + ENVP S I+ YF++EV+PHV DA+I+ DEKD EIG VGYEI Sbjct: 361 QDGDLRDNENVPLNPSKITSDLIESYFLKEVAPHVSDAWINADKRDEKDGEIGIVGYEIP 420 Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 FNR FY YQP R L++ID +L V A+I LL+E+ Sbjct: 421 FNRHFYVYQPPRDLREIDKDLDAVSAEILQLLQEV 455 >gi|330721465|gb|EGG99515.1| Type I restriction-modification system2C DNA-methyltransferase subunit M [gamma proteobacterium IMCC2047] Length = 550 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 184/461 (39%), Gaps = 52/461 (11%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY---SFYN 82 +++ I L+RL A E + V + Y+ G + +FY Sbjct: 1 MDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYIDKGKTEAQARELADDEDEYDKTFYI 60 Query: 83 T--SEYSLSTLGSTNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 + + + + L I ++ + + + DF + +L L + Sbjct: 61 PPIARWDVIKDLKHDIGAELNKATEAIEEYNPSLEGVLVSIDF-NIKNKLSDKK-LRDLL 118 Query: 138 KNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 +FS L + YE+LI+ F + +F TP +VV L +LL Sbjct: 119 SHFSQHRLRNSDFDRPDLLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVSLL----- 173 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 P +YDPT G+GG L N++A G + P L GQE+ T A+C Sbjct: 174 -----KPHAGMRIYDPTVGSGGMLVQTRNYLASHG---ENPSNLSLFGQEMNLNTWAICK 225 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGKKWEKDKDAV 312 M + + S +I++G TL + T F ++NPPF K Sbjct: 226 MNMFLHGV-------YSADIRKGDTLREPQHTQGGGLMSFDRVIANPPFSLK-----KWG 273 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++E GRF G P G + F+ H+ L N G +V+ LF G Sbjct: 274 KEEADADNYGRFPYGTPPKDAGDLAFVQHMIASL----NAEGMMGVVMPHGELFRGA--- 326 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 E IR+ +L +DL+EA++ LP+ LF+ T I L I++ K +R+GKV IN+ + Sbjct: 327 SEKTIRQGILNDDLLEAVIGLPSALFYGTGIPACLLIINKDKPADRKGKVLFINSELEYQ 386 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 GK + + +I+ + K +S+++ Sbjct: 387 E----GKNQNKLRQQDVEKIVQTFDDYGEIKRYSKVVTLAD 423 >gi|260905939|ref|ZP_05914261.1| type I restriction-modification system, M subunit [Brevibacterium linens BL2] Length = 506 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 110/470 (23%), Positives = 189/470 (40%), Gaps = 53/470 (11%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAF 62 + L + +W A L G D+ + P + + + AVR+ Sbjct: 9 KKLTQRELESTLWAAANALRGPVDAGDYKAYVFPVFFFKWISDTYDYWHTQAVRDWGDEL 68 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASF---SDNAKAIFED 117 + F + + ST N L + + + +F D Sbjct: 69 TDEIEASDY------QPFIVPTGCRWKDVHSTVVNVGVALNTALQKVEQTNPELVGVFGD 122 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 ++++ RL + L + F + L PD V ++ YE+L+R F + A +F Sbjct: 123 INWANK-DRLPE-NALTDLLDAFHSVRLDPDHVEGDMLGAAYEYLLREFAEASGKKAGEF 180 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR VVHL +L P ++ DP CG+ G L + +N V + G P Sbjct: 181 FTPRHVVHLLVKIL----------QPQSGDSIIDPACGSAGMLVETVNEVKNSGGD---P 227 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293 L HGQE+ T A+ + + LE +I++G T S+ F F+ Sbjct: 228 RTLSLHGQEVNLTTSAIAKMNLYLHGLE-------DFSIKRGDTFSEPRFVTNGKLDAFN 280 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + N R G+P +G ++ H+ + ++ Sbjct: 281 VVIANPPFSLQNWGASSWS-----NDSYNRAFCGVPPAKNGDFAWIQHMISSMKEDT--- 332 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +V+ LF G E IR+ LLE DL+EA+++LP +LF+ T+I L I + Sbjct: 333 GRVGVVMPHGVLFRGGK---EGAIRQCLLEKDLLEAVISLPKNLFYSTSIPVCLLIFRAK 389 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 K+ ERR +V ++A+ + + G + +++ I Y E+ Sbjct: 390 KSAERRSRVLFVDASSRF----SAGTNQNTMSESDIDTIFAAYTRGEDID 435 >gi|84624919|ref|YP_452291.1| type I restriction system adenine methylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368859|dbj|BAE70017.1| type I restriction system adenine methylase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 604 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 114/547 (20%), Positives = 218/547 (39%), Gaps = 78/547 (14%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 S + L A+ +WK A+ L G+ + +D+ V+L L+ + A E +A+ + Sbjct: 92 KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 148 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 + +A F+ + S L + ++++ + I +++ K + Sbjct: 149 --DPPAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 206 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173 + ++ +L ++ SGI L+ P V+ +YE+ + +F + Sbjct: 207 LPKDYARPALNKV----MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKR 262 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VVH ++ +YDP CG+GG + V + G Sbjct: 263 GGEFYTPRSVVHTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSEKFVNEHGGR 311 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKR 291 + +GQE T +C + +R ++SD I+ + + KD + Sbjct: 312 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLK 360 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + + + R+ G P + + + +L H+ + L Sbjct: 361 ADFILANPPFNISDWGGE-------RLRDDVRWAFGPPPVGNANYAWLQHIVHHLSPH-- 411 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A +VL++ + SGE +IR+ ++E +++ +VALP LF+ T I LWIL+ Sbjct: 412 --GFAGVVLANGSM--SSQQSGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLWILA 467 Query: 412 NR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461 K +RRG++ I+A ++ T + RR ++D + +I Y + Sbjct: 468 KDRSNGLVLQSKLRDRRGEILFIDARNMGTLVDRT---RRELSDAEVARIAATYHAWRGE 524 Query: 462 GKFSRMLDYRTF-------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 D F R+ VL P R + A ++L+ L + Sbjct: 525 QDAGDYADIAGFCKSAPLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAQK-MQRLATLWRE 583 Query: 514 FWLDILK 520 + K Sbjct: 584 QQQEAAK 590 >gi|87310398|ref|ZP_01092528.1| type I restriction system adenine methylase [Blastopirellula marina DSM 3645] gi|87286897|gb|EAQ78801.1| type I restriction system adenine methylase [Blastopirellula marina DSM 3645] Length = 526 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 110/549 (20%), Positives = 204/549 (37%), Gaps = 65/549 (11%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 + +W A+ + + ++ V+L L+ + A E R + + G++ E Sbjct: 20 ESKLWLAADKMRNNMDAAEYKHVVLGLIFLKYISDAFEEMRQKLLAGEGDYAGAD-PEEP 78 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTI 124 A F+ + L + + I + K + DF+ Sbjct: 79 DEYRAENCFWVPTAARWQLLQDNAKQPTIGKLIDDAMVAIERDNPRLKGVLPK-DFAR-- 135 Query: 125 ARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 L+K L ++ I L + ++ +YE+ + F S + F TPR V Sbjct: 136 PALDK-QRLGELIDLIGTIGLGDAENRSKDILGRVYEYFLSEFASAEGKKGGQFYTPRCV 194 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V + +L +YDP CG+ G + V + G + + Sbjct: 195 VRVLVEMLAPGKG-----------RIYDPCCGSAGMFVQSEKFVEEHGGRIG---DIAVY 240 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQE P T + + + IR +E D + + T +DL + + L+NPPF Sbjct: 241 GQESNPTTRRLALMNLAIRGIEGDIGPENA------DTFRRDLHKDLKADFVLANPPFND 294 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 H+N + R+ G+P + + ++ H + L GG A VL++ Sbjct: 295 S---------DWHRNDDDVRWAYGVPPKGNANYAWVQHFIHHLAP----GGFAGFVLANG 341 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR---- 419 + SGE EIR+ ++E DL++ +VALP LF+ T I LW L+ K ++ R Sbjct: 342 SM--SSNQSGEGEIRKAIVEADLVDCMVALPGQLFYSTQIPVCLWFLTRGKKDKSRRNRV 399 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI- 478 G+ I+A L I R + D++ ++I D Y + + + Y I Sbjct: 400 GETLFIDARKLGVLIDRV---HRELTDEELQRIADTYHAWRGDLKTINPKSKLKKYEDIP 456 Query: 479 ------KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 K + ++L E + + + + + Q Sbjct: 457 GFCFSAKKEQIAEHGYVLTPGRYVGAEE---VEEDDEPFEEKMARLTQQLTDQFAESKKL 513 Query: 533 ESFVKESIK 541 E +++++K Sbjct: 514 EKAIQKNLK 522 >gi|332704540|ref|ZP_08424628.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfovibrio africanus str. Walvis Bay] gi|332554689|gb|EGJ51733.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfovibrio africanus str. Walvis Bay] Length = 564 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 117/577 (20%), Positives = 205/577 (35%), Gaps = 89/577 (15%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT G+ + L A+ +WK A+ L G ++ V+L L+ + + E R ++ + Sbjct: 1 MTNNDGTNSELVYADTLWKAADTLRGQVDAAEYKHVVLGLLFLKYISDSFEARREELQAE 60 Query: 59 YLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107 G + L + ++ A F+ E + L + TR ++ + I Sbjct: 61 LQTDGITEPQLTALLENRDEYTAERVFWVPPEARWANLQNQATRADIATLIDDAILAIER 120 Query: 108 -SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRR 165 + N K+ I +G L ++ + + + D + +YE+ + + Sbjct: 121 DNPNLKSKLPRDYARRGIE----SGRLKRLIELIADVGFKGDRAKARDTLGRVYEYFLGK 176 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + +F TPR VV L ++ +YDP CG+GG + Sbjct: 177 FAQAEGKLGGEFYTPRCVVRLLVEMI-----------EPYNGRVYDPCCGSGGMFVQSER 225 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 V G + GQE P T + + IR +E++ + T ++ Sbjct: 226 FVEAHGGQ---KTDISIFGQESNPTTWRLAHMNLAIRSIEANLGSQPA------DTFLRN 276 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 L + R Y L+NPPF K + R+ G P + + + ++ H + Sbjct: 277 LHSDLRADYILANPPFNVSDWSGK-------LLQDDVRWRYGTPPLGNANYAWIQHFIHH 329 Query: 346 LE-LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L GGG A V+++ L + GE EIR+ ++E DL++AIVALP LFF T I Sbjct: 330 LALPNGRGGGVAGFVMANGSLSSNA--GGEGEIRQRIVEADLVDAIVALPAQLFFTTGIP 387 Query: 405 TYLWILSNRK------------TEERRGKVQLINATDLWTSIRN------EGKKRRII-- 444 LW L+ K + R+G+ I+A L G + Sbjct: 388 VCLWFLTRDKTGKNLKNGCPNRPDGRKGETLFIDARKLGIMQTRTLRVLTGGDSGETLLA 447 Query: 445 -------NDDQRRQILDIYVSRENGKFSRMLDYRTFG---YRRIK-------VLRPLRMS 487 D +I+ + D G Y I + Sbjct: 448 DGIGDPKPDSDIGRIVYAFRQWRGEPKPEWWDEEKHGGWAYCDISGFCKATHIEEIKEQG 507 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 F+L E + + +L + + Sbjct: 508 FVLTPGRYVGAEEQ---ANDNEPFIEKYPQLLAELEE 541 >gi|87300611|ref|ZP_01083453.1| type I restriction system adenine methylase [Synechococcus sp. WH 5701] gi|87284482|gb|EAQ76434.1| type I restriction system adenine methylase [Synechococcus sp. WH 5701] Length = 603 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 109/552 (19%), Positives = 191/552 (34%), Gaps = 70/552 (12%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 +W A+ L + ++ V+L L+ + + E R+ + + G+N + Sbjct: 94 EAKLWLTADKLRNNMDAAEYKHVVLGLIFLKYISDSFEEHRAKLLAGEGDYEGAN-PEDP 152 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTI 124 A F+ +E S L + ++ + I + K + + Sbjct: 153 DEYKAENVFWVPAEARWSHLQANAKQSTIGKLVDDAMVAIERDNPRLKGVLPKDYARPAL 212 Query: 125 ARLEKAGLLYKICKNFSGIELHPD------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + L ++ + IEL ++ +YE+ + RF S + F Sbjct: 213 DK----QRLGELIDVIATIELTAASEGEQTHRSVDLLGRVYEYFLTRFASAEGKNGGQFY 268 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP VV +L +YDP CG+GG + V G Sbjct: 269 TPSCVVRCLVEML-----------EPYKGRIYDPCCGSGGMFVQSEKFVESHG---GKLG 314 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +GQE T + V + +R +E+D + + +DL R Y L+N Sbjct: 315 DISIYGQESNATTRRLAVMNLALRGIEADFGP------EHADSFRRDLHPDLRADYVLAN 368 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + + R+ G+P + + ++ H + L G A Sbjct: 369 PPFNDS---------DWFRKDDDVRWQFGVPPKGNANFAWVQHFIHHLAPQ----GMAGF 415 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-- 416 VL++ + SGE EIR+ L+E DL++ +VALP LF+ T I LW L+ K Sbjct: 416 VLANGSM--SSNQSGEGEIRKALIEADLVDCMVALPGQLFYSTQIPVCLWFLAKSKAADG 473 Query: 417 -----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLD 469 +RRG I+A L T I R + + +I Y NG+ S D Sbjct: 474 QRGFRDRRGHTLFIDARKLGTLIDRV---HRELLEADLAKISSTYHRWRCTNGEGSYE-D 529 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 F L E + ++ + Q Sbjct: 530 VPGFCKSATTAEIAAHGHV-LTPGRYVGAEE---VEDDGEPFEEKMPRLVAELEAQFAES 585 Query: 530 GWAESFVKESIK 541 E ++ +++ Sbjct: 586 AKLEQAIRANLR 597 >gi|15839331|ref|NP_300019.1| type I restriction-modification system DNA methylase [Xylella fastidiosa 9a5c] gi|9107980|gb|AAF85527.1|AE004080_9 type I restriction-modification system DNA methylase [Xylella fastidiosa 9a5c] Length = 519 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 103/518 (19%), Positives = 200/518 (38%), Gaps = 71/518 (13%) Query: 1 MTEFTGSAAS-------LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 M + + ++K A+ L G+ + +D+ V L L+ + A E S Sbjct: 1 MAHRKTTTKNGNGGTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHS 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107 A+ + + E F+ + S L + ++ + + I Sbjct: 61 ALLAE--DAQAAEDKDEYLAH---NVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEK 115 Query: 108 -SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRR 165 + + K + + ++ +L ++ SGI L+ + ++ +YE+ + + Sbjct: 116 DNPSLKHVLPKDYARPALNKV----MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQ 171 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + +F TPR VV + +L +YDP CG+GG + Sbjct: 172 FAGAEGKRGGEFYTPRSVVRVLVQML-----------EPYSGRVYDPCCGSGGMFVQSEK 220 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLS 283 V + G + +GQE T + + +R ++SD I+ + + Sbjct: 221 FVLEHGGRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFH 269 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D + Y L+NPPF + E R+ G+P + + +L H+ Sbjct: 270 NDALRDLKADYILANPPFNISDWGGD-------RLREDVRWKFGVPPAGNANYAWLQHIY 322 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + L G A +VL++ + SGE EIR ++E D+++ ++A+P LF+ T I Sbjct: 323 HHLAP----NGTAGVVLANGSM--SSNHSGEGEIRTHMIEADIVDCMIAMPGQLFYSTQI 376 Query: 404 ATYLWILSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW L+ K +RRG+V L++A L + RR + D+ +QI D Y + Sbjct: 377 PACLWFLARNKNPGKGLRDRRGQVLLMDARALGVLVDRT---RRELTDEHIQQIADTYHA 433 Query: 459 RENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGL 495 + + G+ + + + ++L Sbjct: 434 WRGEQGAAAYADVA-GFCKSATLEDIRKQGYVLTPGRY 470 >gi|313672539|ref|YP_004050650.1| site-specific DNA-methyltransferase (adenine-specific) [Calditerrivibrio nitroreducens DSM 19672] gi|312939295|gb|ADR18487.1| Site-specific DNA-methyltransferase (adenine-specific) [Calditerrivibrio nitroreducens DSM 19672] Length = 509 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 97/534 (18%), Positives = 197/534 (36%), Gaps = 53/534 (9%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + S +WK A+ L + ++ V+L LR + A E +++ Sbjct: 1 MAEQKQNIESFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISDAFEDLYEKLKKGEG 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 + G++ + A F+ E S L + + I + + K Sbjct: 61 EYSGAD-PEDVDEYKAENVFFIPPEARWSYLKAHAKSPEIGKIIDRAMDLIEKENPSLKG 119 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172 + I + + + F+ + ++ ++ +++E+ + +F + Sbjct: 120 VLPKVYARGNIDPIS----IGGLIDLFNNMAINEAKEKTSDILGHVFEYFLGQFALAEGK 175 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TPR VV L +L ++DP CG+GG + V + Sbjct: 176 KGGQFYTPRSVVELLVEML-----------EPYKGRVFDPCCGSGGMFVQSEKSVQEHQG 224 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + +GQE T +C + IR ++S + + + D + Sbjct: 225 KIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNPEG-----SFLNDAHKDLKA 276 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF + + R+ G+P + + ++ H L Sbjct: 277 DFVIANPPFNDSDWSGE-------LLRKDVRWKYGVPPEGNANYAWIQHFIFHLSPS--- 326 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+A VL+ L + E EIR+ ++++D+I+ IV LP LF T I LW + Sbjct: 327 -GKAGFVLAKGSLTT--KQNAEYEIRKNMIQDDIIDCIVNLPPKLFLNTQIPACLWFIRK 383 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 KT + +G++ I+A D+ I ++R++ +D R+I D Y + S Sbjct: 384 NKTTK-KGQILFIDARDMGQLINR---RQRVLTEDDIRKIADTYHKWQKEDGSYE---DI 436 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 G+ + + + ++L L + + L+ + ++ Sbjct: 437 KGFCKSATIEEVANLDYVLTPGRYVGLPDEEEDFDFEERFNKLKAEFLQQLKEE 490 >gi|224023386|ref|ZP_03641752.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM 18228] gi|224016608|gb|EEF74620.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM 18228] Length = 502 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 101/538 (18%), Positives = 194/538 (36%), Gaps = 64/538 (11%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + +A IWK A+ L G+ +++ V+L L+ + E + E+ Sbjct: 1 MAKKSNTADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDRFEVKYHELLEE- 59 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNA 111 G + + + F+ E + + T +N I + Sbjct: 60 ----GDGFEEDKDEYTSENIFFVPQEARWTVVTKAAHTPEIGTAI-DNAMRLIEKENPRL 114 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + L + F+ I++ ++ YE+ + +F Sbjct: 115 KGILPKNFARPELDK----RRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEG 170 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP +V +L +YDP CG+GG + + + Sbjct: 171 KLAGEFYTPACIVRTLVEVL-----------QPYSGRVYDPCCGSGGMFVQSAKFINEHQ 219 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + GQ+ P T + + IR +E+D + + T D + Sbjct: 220 GNIN---NISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFAA------DTFFDDQHPTLK 270 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF K + R+ G+P + + ++ H+ + L Sbjct: 271 ADYILANPPFNLSDWGAD-------KLQDDVRWKYGIPPSGNANFAWIQHMIHHLSPH-- 321 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GR +VL++ L GE IR +++ DL+E IV +P+ LF+ T I LW L+ Sbjct: 322 --GRIGMVLANGAL--SSQSGGEGTIRENIIKADLVECIVTMPSQLFYTTGIPVSLWFLN 377 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFSRMLDY 470 K ++ GK+ I+A + T + K R +++ ++I Y + G Sbjct: 378 RSK--KQIGKILFIDARQMGTMVTR---KLRELDEKKDIQRIAKTYNDFQAG-----TLE 427 Query: 471 RTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 GY + + + +IL + + L M ++ + Sbjct: 428 NEKGYCAVATLDEVAKQDYILTPGRYVGIAEAEDDGEPFQEKMERLTSELSDMFEKSH 485 >gi|85711390|ref|ZP_01042449.1| putative type I site-specific deoxyribonuclease LldI chain protein [Idiomarina baltica OS145] gi|85694891|gb|EAQ32830.1| putative type I site-specific deoxyribonuclease LldI chain protein [Idiomarina baltica OS145] Length = 511 Score = 333 bits (854), Expect = 6e-89, Method: Composition-based stats. Identities = 108/541 (19%), Positives = 201/541 (37%), Gaps = 56/541 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--- 60 T S S+ +W + G + +L L+ + + ++ Sbjct: 2 TTISQDSINKALWNACDTFRGTINAGTYQDFLLTMLFLKYISDVWQDHYDQYVAQHGDEP 61 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116 + E FV SFY + L + + K +F+ Sbjct: 62 ELIEEMMKSERFVLPRDASFYALYDRRYEPGNGERIDQALHAIEEANGTKLKDAGKSVFQ 121 Query: 117 DFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171 D F+ +K +L + ++F+ EL+ V+ N YE+LI+ F + Sbjct: 122 DISFNTDKLGEEKQKNDILRHLLEDFAKPELNLKPSRVGSLDVIGNAYEYLIKHFAASGG 181 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP ++ L LL P ++ DP CG+G L V Sbjct: 182 QKAGEFYTPPEISDLIAELL----------DPQPGDSICDPACGSGSLLMKCGRKVIANH 231 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + GQE T ++ M + + + I+ G T+ K Sbjct: 232 DSKE----YALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDKN 280 Query: 292 -----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 F +NPPF + +N + RF G+P + G F++H+ L Sbjct: 281 GDLMLFDIVTANPPFSLD-----KWGHDDAENDKFSRFRRGVPPKTKGDYAFILHMIETL 335 Query: 347 EL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 + GGR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 KPASSSKRGGRMGVVVPHGVLFRG---SKEGKIRQQLIDENLLDAVIGLPEKLFYGTGIP 392 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463 + + K++ KV I+A+ + GK + ++DD ++I+D Y SRE + Sbjct: 393 AAILVFKKSKSD---DKVLFIDASREF----KSGKNQNQLSDDNIQKIVDTYHSRETVEK 445 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +S + + P + ++ + + + +KL + + K + Sbjct: 446 YSYLATLGEIQENDYNLNIPRYVDTFEEEEEIDLMAVRVERQKLKVELEELESQMEKYLE 505 Query: 524 Q 524 + Sbjct: 506 E 506 >gi|259419466|ref|ZP_05743382.1| type I restriction-modification system, M subunit [Silicibacter sp. TrichCH4B] gi|259344707|gb|EEW56594.1| type I restriction-modification system, M subunit [Silicibacter sp. TrichCH4B] Length = 505 Score = 333 bits (853), Expect = 8e-89, Method: Composition-based stats. Identities = 111/541 (20%), Positives = 199/541 (36%), Gaps = 58/541 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + W + G + IL L+ + R++Y Sbjct: 1 MT-DQVTQQQINQTAWAACDTFRGAVDAGQYKDYILVMLFLKYISDLWNDHLETYRKQYG 59 Query: 61 AF---GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 ++ E F+ G SFY+ LE + + +F + Sbjct: 60 DDEARIRRRLERERFILPEGASFYDLYAQRNEANIGERINIALEKIEDANRAKLEGVFRN 119 Query: 118 FDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 DF+S ++ L + ++F+ ++L P V + ++ Y +LI RF S+ + Sbjct: 120 IDFNSEANLGRSKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP V L L +P T+ DP CG+G L A V Sbjct: 180 KAGEFFTPAPVSRLLAKL----------AAPQPGNTICDPACGSGSLLIQASQEVGSEN- 228 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 +GQE+ T A+ M + + I+ TL+ Sbjct: 229 -------FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEADH 274 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +RF L+NPPF +DA ++K RF G+P S G F+ H+ + Sbjct: 275 LQRFDVVLANPPFSLDKWGAEDAAGDQYK-----RFWRGVPPKSKGDYAFITHMIEIAKR 329 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR A+++ LF G A E IR+ L+E +L++A+V LP +LF T I + Sbjct: 330 QS---GRVAVIVPHGVLFRGGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPVAIL 383 Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463 I + E R V I+A+ +T GK + ++++ ++L+ Y +R + Sbjct: 384 IFDRSREEGGANTDRRDVLFIDASKEFTP----GKTQNVMDEVHVARVLETYATRAEVER 439 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +S + P + + + +++ + + + Sbjct: 440 YSHRASPEEIAENGYNLNIPRYVDTFEPEEEIDVAAVQKDIQRIEAELAEVRVKMAGYLK 499 Query: 524 Q 524 + Sbjct: 500 E 500 >gi|322369760|ref|ZP_08044323.1| type I restriction-modification system, M subunit [Haladaptatus paucihalophilus DX253] gi|320550678|gb|EFW92329.1| type I restriction-modification system, M subunit [Haladaptatus paucihalophilus DX253] Length = 520 Score = 333 bits (853), Expect = 8e-89, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 217/543 (39%), Gaps = 59/543 (10%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + T A+L + +W+ A+ L G D+ I L+R+ E + E+Y Sbjct: 13 NQQTLDLATLESHLWEAADILRGSIDAADYKNYIFGLLFLKRINDRFEEETEEIAEEYGI 72 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN----AKAIF 115 + + F+ + + T+ L +A+ D A + Sbjct: 73 DEDTVAHDRDLHEE----FWVPERAHWDHIAAQDTDIGATLNKALAAVEDENDAIADRVL 128 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGA 174 DF+ RL A L ++ +F+ + + D + YE+LIR+F + + Sbjct: 129 TSVDFNDK-DRLSDA-TLDELVTHFTKHRYRNEDLEDPDIFGRAYEYLIRQFADDAGKKG 186 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR+VV L + P +YDP CG+GG L + HV G Sbjct: 187 GEFYTPREVVQLLVDCV----------DPEEGDRVYDPACGSGGMLIYSAQHVEQEGGD- 235 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TG 289 + +GQE T A+ +L+ I +G T+++ F Sbjct: 236 --RDDISLYGQEKNLNTWAIGQMNVLLH-------ELQDAKIAKGDTITEPKFVTEHDEL 286 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + F ++NPP+ +K + E E RFG GLP + G ++ + L Sbjct: 287 EVFDRVVANPPWNQKKWSKEWVQENE----PYNRFGYGLPPKNRGDWSWIQLMLASL--- 339 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 + G+A IV+ + LF E +IR+ +LE DLIEA++ALP +LF+ T + I Sbjct: 340 -SETGKAGIVMDNGVLFRS---RSEKKIRKPILEADLIEAVIALPENLFYNTGSPGCILI 395 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEG-------KKRRIINDDQRRQILDIYVS-REN 461 ++ K EER+GKVQ I A D ++R G + + + + + +++ RE Sbjct: 396 MNKDKPEERKGKVQFIYAED--QTLRESGVQVFEELSNQNQLTQEGVEYLAETHLTGREE 453 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 SR++D + P + + + E +L+ + + + Sbjct: 454 DHHSRLVDLEEIEENDWNLNVPRYVDTTEPEEPIDVSEKLRELDELAEERRKTDEEFQQY 513 Query: 522 MMQ 524 M + Sbjct: 514 MEE 516 >gi|262198182|ref|YP_003269391.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium ochraceum DSM 14365] gi|262081529|gb|ACY17498.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium ochraceum DSM 14365] Length = 860 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 102/477 (21%), Positives = 171/477 (35%), Gaps = 59/477 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L ++ A+ L G ++F + I ++R E R + + A G S Sbjct: 23 TLGQLERHLYAAADILRGKMDASEFKEYIFGMLFIKRCSDEFEARREEILAEQQAAGASA 82 Query: 67 IDLESFVKVAG---YSFYNTSEYSL------STLGSTNTRNNLESYIASFSDNAKAIFED 117 + SF+ T L + + + + Sbjct: 83 EAAALAAEQPERYARSFFVPPSARWAQVSALERDLGTGLNAAL-AALEDTNPALHGVLRH 141 Query: 118 FDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGA 174 DF+ T+ +R+ L + +F L M YE+LI F + Sbjct: 142 IDFNRTVGKSRMPD-KRLRALVAHFGRHRLRNRDFEFSDMLGAAYEYLIGEFADSAGKKG 200 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VV L L P +YDP G+GG L A +V + G Sbjct: 201 GEFYTPRPVVRLIVRL----------SDPRPGMRVYDPCSGSGGMLILARQYVQEHGGDA 250 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289 +GQE + ML+ + +I+ G TL + L Sbjct: 251 GSLG---LYGQEDNGGVWTISQMNMLLHGV-------SDADIRNGDTLHEPLHIDPASGE 300 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 RF ++NPPF + + D+ + + RFG ++ H+ L Sbjct: 301 LLRFDRIITNPPFAQNYSPDELPLPERF------RFGMCPHAGKKADWMYAQHMLAALAP 354 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GG A V+ LF G E IR +LE DL+EA++ LP +LF+ T+I + Sbjct: 355 ----GGMAVTVMPHGVLFRGGV---EQAIRSRVLEADLVEAVIGLPPNLFYGTSIPACVL 407 Query: 409 ILSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 +L K ER+G+V ++A+D + + R + + + +I + Sbjct: 408 VLRAPEAKPPERQGRVLFVDASDEFHAARA----QNHLQPEHVEKIATAFERFAEVP 460 >gi|126726005|ref|ZP_01741847.1| type I restriction-modification system, M subunit [Rhodobacterales bacterium HTCC2150] gi|126705209|gb|EBA04300.1| type I restriction-modification system, M subunit [Rhodobacterales bacterium HTCC2150] Length = 502 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 104/532 (19%), Positives = 202/532 (37%), Gaps = 53/532 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63 + + + W + G +++ +L ++ L + R+ ++ Sbjct: 5 TQSEINKAAWAACDTFRGLIDASEYKDYVLTMLFMKYLSDVWQDHRTGYEAEHPDSPELV 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED--FDFS 121 + E+F G+SFY+ + ++ + + +F D F+ + Sbjct: 65 EELMRTEAFALPKGHSFYDLYDRRHEAGNGQRIDEATQAIEQANLSKLENVFRDISFNAN 124 Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178 +K LL + ++F+ ++L P V ++ YE+LI RF S + A +F Sbjct: 125 KLGEEDQKNDLLKSLLEDFNTPALDLRPSRVGQLDIIGGAYEYLISRFASSAGKKAGEFY 184 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V L L+ P + DPTCG+ L + D K Sbjct: 185 TPAQVSMLMARLM----------DPQQNDEICDPTCGSASLLMKCGKLIRDSSGTRK--- 231 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFH 293 +GQE T A+ + + E + +IQ G T+ T + F Sbjct: 232 -YALYGQEAIGSTWALAKMNLFLHGEE-------NHDIQWGDTIRSPKLTTGDDTLRHFD 283 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + + GRF G+P + G F++H+ ++ Sbjct: 284 VVVANPPFSLD-----KWGVAAAEADKFGRFTRGIPPKTKGDYAFILHMIETMKPRT--- 335 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR A+V+ LF G S E +IR+ L+E +L++A++ LP LFF T I + + R Sbjct: 336 GRMAVVVPHGVLFRG---SSEGKIRKQLIEQNLLDAVIGLPEKLFFGTGIPAAILVFRKR 392 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 K + V I+A+ + G + + D +I++ Y +R + K++ + Sbjct: 393 KAD---DTVLFIDASREFD----SGTNQNTLTDSHLDKIVETYAARADMDKYAHVASAAE 445 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + P + ++ + + KL+ + + + + Sbjct: 446 IAENDYNLNIPRYVDTFEEEEEIDLMAVRSERLKLNTEMEELEAKMAGYLAE 497 >gi|84385719|ref|ZP_00988750.1| type I restriction-modification system methylation subunit [Vibrio splendidus 12B01] gi|84379699|gb|EAP96551.1| type I restriction-modification system methylation subunit [Vibrio splendidus 12B01] Length = 492 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 128/551 (23%), Positives = 217/551 (39%), Gaps = 72/551 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE + + L ++ K A L G +DF I P +R+ + E+ Sbjct: 1 MTEK-LTLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEE-- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKA----I 114 S D E + F + + T N +E + + I Sbjct: 58 ----SGGDEEYASMPEMHRFEIPTGCHWRDVRETTTNVGITIEDALRGIEQANQEYLYGI 113 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F D +S+ +L LL + ++FS L V ++ N YE+LI+ F ++ A Sbjct: 114 FGDAQWSNK-NKLSD-ELLINLVEHFSQHTLGNQNVAPDMLGNAYEYLIKHFADLTNKKA 171 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VVHL +L P T+YDP CGTGG L + ++H+ D + Sbjct: 172 GEFYTPRSVVHLLGMIL----------DPHEGETIYDPACGTGGMLLECVDHLKDNKEDY 221 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 + GQE + ++ M + +E I +G TL F K Sbjct: 222 RTLK---LFGQEKNLTSSSIARMNMFLHGIEDFE-------ILRGDTLRHPAFFEADGLK 271 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F ++NPPF K ++ N GR G+P +G M ++ H+ + Sbjct: 272 TFDCVIANPPFSLKEWGAENWA-----NDPYGRNIAGVPPKGNGDMAWVQHMVKSM---- 322 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 N GR +VL LF A E +IR+ LLE D++EA++ L ++F+ T +A + + Sbjct: 323 NSTGRMTVVLPHGALFRKAA---EGKIRKQLLEQDMLEAVIGLGPNVFYGTQLAACVMVF 379 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 K +++GKV I+A+D G+ + + + +QI D Y ++ + Sbjct: 380 KQNKPADKKGKVMFIDASDQI----RVGRAQNFLEPNHVQQIYDWYHGYQDVEN------ 429 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 Y ++ + L L + K+ + + + + Q Sbjct: 430 ----YVKVASMDEL-------AENDYNLNIPLYVEKIIEDNLPSVEEAMADLKQAWQESL 478 Query: 531 WAESFVKESIK 541 AE K+ +K Sbjct: 479 EAEEKFKKVLK 489 >gi|167041819|gb|ABZ06560.1| putative N-6 DNA methylase [uncultured marine microorganism HF4000_097M14] Length = 572 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 122/576 (21%), Positives = 225/576 (39%), Gaps = 59/576 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E + L +F+W+ A+ L G+ +F I L+R+ + + R V K+L Sbjct: 1 MSEK-LTLQQLESFLWETADILRGNMDAAEFKDYIFATMFLKRISDSFDDEREKVINKFL 59 Query: 61 AFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKA 113 + E +F+ + + L + + L + I + + + Sbjct: 60 KKKKNQKQAEKLANDPDQYDTFFIPKKAHWNHLKNLKHDVGAVLNKATAAIEDQNPSLEG 119 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSE 172 + DF+ +K + +FS L M + YE+LI+ F + Sbjct: 120 VLVSIDFNKKDKLSDKKLR--DLLSHFSKHRLRNSDFEKPDLMGSAYEYLIKMFADSAGK 177 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +VV+L L+ P + DPTCG+GG L + N++ + G Sbjct: 178 KGGEFYTPSEVVNLLVRLI----------KPKAKMRVCDPTCGSGGMLIQSRNYLIEHG- 226 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 + P + GQE+ T A+C M + + + +I++G T+ Sbjct: 227 --ENPRNISLFGQEMNQGTWAICKINMFLHSV-------FNADIKKGDTIRDPKHLRSGE 277 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 F ++NPPF ++E N GRF G P G + F+ H+ L Sbjct: 278 LMTFDRVIANPPFSL-----AKWGKEEADNDSFGRFPYGTPPKDTGDLAFVQHMIASL-- 330 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 N G +V+ LF G E EIR+ +L+NDL+EA++ LP LF+ T I + Sbjct: 331 --NAYGVMGVVVPHGVLFRGA---SEMEIRKGILDNDLLEAVIGLPPKLFYGTGIPAAML 385 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467 I++ +K+++R+ K+ IN+ + GK + + + ++IL + + E+ K +S++ Sbjct: 386 IINKKKSKDRKNKIIFINSDLEFEE----GKNQNRLKEQDIKKILSKFNNFEDTKRYSKV 441 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM---- 523 + + +S + + + LK M Sbjct: 442 VSMDKIKENEYNLNIRRYADTSPPPEKFDTYALLNGGIPISEIEDEYIQETLKGMDVSCV 501 Query: 524 ---QQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556 + Y + + + KT K + F Sbjct: 502 FNKKDKNYYEFKSEIKSKEEIKDFLKTKNQKITAQF 537 >gi|313618466|gb|EFR90471.1| putatIve type i restriction enzyme hindviip m protein [Listeria innocua FSL S4-378] Length = 507 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 113/540 (20%), Positives = 206/540 (38%), Gaps = 71/540 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE TG+ +WK A+ L G +++ V+L L+ + E A+ E+ Sbjct: 1 MTENTGNIG-FEETLWKAADKLRGSMDASEYKHVVLGLIFLKYISDKFETKFDALIEE-- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAKA 113 G+ + + A F+ E S + + +I + + K Sbjct: 58 ---GAGFEEDRDEYEAENIFWVPKEARWSFIKDNAKDPKIGQFIDDAMILIEKENTSLKG 114 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + + I + L ++ S I+LH ++ +YE+ + +F S +G Sbjct: 115 VLDKRYARPEIDK----RRLGELIDLISTIKLH-QNGEKDLLGRVYEYFLGQFASVEGKG 169 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP +V ++ +YDP CG+GG + V D Sbjct: 170 GGEFYTPTSIVKTLVDMI-----------EPYQGRVYDPCCGSGGMFVQSEKFVEDHQGR 218 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + L +GQE+ T +C + IR L+++ T DL + Sbjct: 219 VE---NLSIYGQEMNSTTWKLCKMNLAIRGLDANLGPH------HDDTFHHDLHKTLKAD 269 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + L+NPPF ++ + R+ G+P + + +L H+ L Sbjct: 270 FILANPPFNISDWGG-------NQLTDDVRWKFGIPPAGNANYAWLQHMVYHLAP----N 318 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G A IVL++ L S E EIR+ LLE D+++AIVALP LF+ T I LWIL+ Sbjct: 319 GSAGIVLANGSLSTN--TSNEGEIRKNLLEEDMVDAIVALPDKLFYSTGIPVSLWILNRN 376 Query: 414 KTEERR-----GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE--NGKFSR 466 K + + +V I+A L I + R + ++ +I + Y +G++ Sbjct: 377 KKDNPKYRSREHEVLFIDARQLGEMIDR---RHRELTEEDISKISETYHEWRNIDGEYED 433 Query: 467 MLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD----ITWRKLSPLHQSFWLDILKP 521 + G+ + + ++L +E I + + + ++ Sbjct: 434 I-----KGFCKSASIEDIREHEYVLTPGRYVGIEDIEDDGIPFDEKMESMTAELAELFAK 488 >gi|301166115|emb|CBW25690.1| putative type I restriction enzyme modification protein [Bacteriovorax marinus SJ] Length = 580 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 112/492 (22%), Positives = 189/492 (38%), Gaps = 55/492 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT+ + A + +W + G ++ IL ++ L E A E++ Sbjct: 1 MTQK-VTQAEINKILWDACDTFRGVVDAGEYKNYILTMLFIKYLSDTYEEKYEAYSEQFK 59 Query: 61 AFG---GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 ++ E+FV G F + + LE + + + +F + Sbjct: 60 GNETRIKRALEKENFVLPDGCHFNDIYKQKEEKNIGEIIDVALEKIENANKEKLENVFRN 119 Query: 118 FDFS---STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171 F+ + + L + +F+ +L+ V+ N YE+LI F + Sbjct: 120 VSFNSEANLGKTKSRNARLKHLLDDFNSPKLNMRKSHIGNMDVIGNAYEYLIANFAAGAG 179 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP +V L L+ P +YDPTCG+G L + G Sbjct: 180 KKAGEFYTPSEVSQLLAMLV----------KPEKGSRIYDPTCGSGSLLIRCAEQLTKNG 229 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 + +GQE+ T A+ M + + I+ G T+ + Sbjct: 230 IN-----DFQIYGQEITGATWALAKMNMFLHGFDRSV-------IENGDTIRNPIHLEND 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F ++NPPF E K+ GRF G+P S G + F+ H+ L Sbjct: 278 ELMTFDVVVANPPFSLD-----KWGIDEAKSDSYGRFNYGIPPKSYGELAFVQHMVASL- 331 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N GR A+VL LF G S E IR L+ +DL+EA++ LP+ LFF T I + Sbjct: 332 ---NENGRCAVVLPHGVLFRG---SAEKRIREGLINDDLLEAVIGLPSGLFFGTGIPASI 385 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + + +K+ +R+ KV IN + GK + + D I+ YV + + Sbjct: 386 MVFNKKKSADRKDKVLFINGDLEYQE----GKNQNKLRDQDINHIVANYVEFKTEG---L 438 Query: 468 LDYRTFGYRRIK 479 + Y R+ Sbjct: 439 YRHEDKHYSRVV 450 >gi|292491020|ref|YP_003526459.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosococcus halophilus Nc4] gi|291579615|gb|ADE14072.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosococcus halophilus Nc4] Length = 519 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 101/550 (18%), Positives = 194/550 (35%), Gaps = 63/550 (11%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L +WK+A+ L + ++ V+L L+ + A E + + E + G+ Sbjct: 11 KTEEPLQKSLWKSADRLRKNMDAAEYKHVVLGLIFLKYISDAFEELHAKLSEGLGEYAGA 70 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKAIFEDF 118 + ++ A F+ S L + +++ I + K + Sbjct: 71 D-PEDADEYRAENVFFVPEGARWSYLQARAKLPGIGKDVDEAMEAIEKENPTLKGVLPKQ 129 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + + L + I L ++ +YE+ + F + + F Sbjct: 130 YARQNLDKAS----LGALIDLLGKIGLGDATARSRDILGRVYEYFLGEFAAAEGKKGGQF 185 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V L +L +YDP CG+GG + V Sbjct: 186 YTPAAIVKLLVNML-----------EPYKGRVYDPCCGSGGMFVQSEKFVEVHQGRID-- 232 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 + +GQE T+ +C + IR ++ R + + D + Y ++ Sbjct: 233 -DISIYGQESNQTTYRLCRMNLAIRGIDGSNVRWNGEG-----SFLNDAHKDMKAEYIIA 286 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF + + R+ G+P + + + ++ H+ L G Sbjct: 287 NPPFNDSDWSGE-------LLRDDPRWQFGVPPVGNANFAWMQHMIYHLAP----NGTLG 335 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL++ L GE EIR+ ++E L++ IVALP LF+ T I LW +S+ + Sbjct: 336 LVLANGSL--SSNSGGEGEIRKAIIEAKLVDCIVALPDKLFYNTGIPACLWFISHDRRNH 393 Query: 418 R----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--------FS 465 ++ I+A +L I + R +D+ +I D Y + N F Sbjct: 394 NFRNREDEILFIDARNLGQMITR---RNRDFSDEDIARIADTYHAWRNKDGGYEDVKGFC 450 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + + VL P R I D+ + + KL+ + + + + + Sbjct: 451 KAATLEDVRKHKH-VLTPGRYVGIPDEED-DGVPFEEKMTKLTEEL-AAQMAQGQALDAR 507 Query: 526 IYPYGWAESF 535 I F Sbjct: 508 IRENLAKVGF 517 >gi|291556523|emb|CBL33640.1| Type I restriction-modification system methyltransferase subunit [Eubacterium siraeum V10Sc8a] Length = 805 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 109/530 (20%), Positives = 204/530 (38%), Gaps = 61/530 (11%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ L + +++ L G ++ + P +RL + A E+ S Sbjct: 313 TTSQKLFSHLFEACNILRGPINQDEYKSYVTPILFFKRLSDVYDEETQAALEE------S 366 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFS----DNAKAIFEDFD 119 D E + F + N + + + D +F FD Sbjct: 367 GGDEEYASFAENHRFVIPDGCHWQDVREASENVGVAIVNAMNGIERANPDTLSGVFSSFD 426 Query: 120 FSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 ++ + + + L + ++ S +++ + VM + YE LI++F + A +F Sbjct: 427 DANWTDKTKLSDERLKDLIEHMSKLKVGNNNYSADVMGDSYEFLIKKFADLSKKNAGEFY 486 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR +V L LL +P T+YDP CGTGG L +A+ + H Sbjct: 487 TPRSIVKLLIMLL----------APKAGETVYDPACGTGGMLIEAIRFM-----HGDKLT 531 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294 +GQE T A+ + + + + QG TL + + + F Sbjct: 532 YGRIYGQEKNLATSAIARMNLFLHGAK-------DFKVTQGDTLRSPNYLERGSLQTFDC 584 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF K + + GR G P S+G +L H+ + G Sbjct: 585 VVANPPFSLKNWGSEQ-----FSSDIYGRNIWGCPTDSNGDFAWLQHMVKSMNPKT---G 636 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R A+VL LF E EIR+ L+E+D +EAI+ + + +F+ T ++ + L+N K Sbjct: 637 RCAVVLPQGVLFRSGK---EGEIRKQLVESDKLEAIITMASGVFYSTGVSACILFLNNNK 693 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN----GKFSRMLDY 470 RG++ +I+ + ++T R + I+ + + + D Y + E+ K + D Sbjct: 694 AVSHRGRICMIDGSSIYTPQRA----QNIMTEADIQTVFDYYTTYEDVIEKVKIVTIADI 749 Query: 471 RTFGYRRIK---VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R Y + + + + ++ EA + + L Sbjct: 750 REKDYSLAINNYIEKKEQETVPPEEIRRQYFEAYDEMIEAETRMRELLLK 799 >gi|322691670|ref|YP_004221240.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217] gi|291516263|emb|CBK69879.1| Type I restriction-modification system methyltransferase subunit [Bifidobacterium longum subsp. longum F8] gi|320456526|dbj|BAJ67148.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217] Length = 502 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 105/560 (18%), Positives = 213/560 (38%), Gaps = 68/560 (12%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + + A + IW A+ L G+ +++ V+L L+ + + + E+ Sbjct: 1 MAKKKDNTAEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQELVEE 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNA 111 G + + + F+ T+ + ++ I + ++ Sbjct: 61 -----GEGFEEDRDEYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKL 115 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I +F+ L+K L ++ F+ +++ ++ YE+ + +F Sbjct: 116 KGILPK-NFARQ--ELDKR-RLGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEG 171 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP VV ++ +YDP CG+GG + + V Sbjct: 172 KNAGEFYTPACVVKTLVEVI-----------EPYHGRVYDPCCGSGGMFVQSADFVKRHQ 220 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + +GQE P T + + IR +++D + T +DL ++ Sbjct: 221 GNIN---DISVYGQESNPTTWKMATMNLAIRGIDADLGDHNA------DTFFEDLHKTEK 271 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + L+NPPF K K K R+ G P + + ++ H+ + L N Sbjct: 272 FDFILANPPFNLKDWGGK-------KLENDVRWQYGTPPEGNANFAWVQHMIHHL----N 320 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GR +VL++ L + E EIR +++ DL+E I+A+P LF+ T I LWI++ Sbjct: 321 RSGRMGMVLANGAL--SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIIT 378 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K ++ GK I+A D+ T + + R D+ ++ + + +G Sbjct: 379 KNK--KQSGKTLFIDARDMGTMVSR---RLREFTDEDIAKVSTAFDAFRDG-----TLET 428 Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ I +IL + ++ + F + + + + Sbjct: 429 EKGFSAIATTEDIKAQDYILTPGRY------VGVAEVEEDDEPFEEKMTRLTGEIAKCFE 482 Query: 531 WAESFVKESIKSNEAKTLKV 550 + ++ K+ EA + Sbjct: 483 ESNRLQEQIKKNLEAIGYGM 502 >gi|294624818|ref|ZP_06703478.1| type I restriction-modification system DNA methylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600882|gb|EFF44959.1| type I restriction-modification system DNA methylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 536 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 112/547 (20%), Positives = 217/547 (39%), Gaps = 78/547 (14%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 S + L A+ +WK A+ L G+ + +D+ V+L L+ + A E +A+ + Sbjct: 24 KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 80 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 + +A F+ + S L + ++++ + I +++ K + Sbjct: 81 --DPQAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 138 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEG 173 + ++ +L ++ SGI L+ V+ +YE+ + +F + Sbjct: 139 LPKDYARPALNKV----MLGELIDLISGIALNDKGAKSKDVLGRVYEYFLGQFAGAEGKR 194 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VVH ++ +YDP CG+GG + V + G Sbjct: 195 GGEFYTPRSVVHTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSEKFVNEHGGR 243 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKR 291 + +GQE T +C + +R ++SD I+ + + KD + Sbjct: 244 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLK 292 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + + + R+ G P + + + +L H+ + L Sbjct: 293 ADFILANPPFNISDWGGE-------RLRDDVRWAFGPPPLGNANYAWLQHIVHHLSPH-- 343 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A +VL++ + SGE +IR+ ++E ++ +VALP LF+ T I LWIL+ Sbjct: 344 --GVAGVVLANGSM--SSQQSGEGDIRKAMIEAGAVDCMVALPGQLFYSTQIPACLWILA 399 Query: 412 NR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461 K +RRG++ I+A ++ + RR ++D + +I Y + Sbjct: 400 KDRSNGLVLKSKLRDRRGEILFIDARNMGALVDRT---RRELSDAEVARIAATYHAWRGE 456 Query: 462 GKFSRMLDYRTF-------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 +D F R+ VL P R + A ++L+ L + Sbjct: 457 QDAGDYVDIAGFCKAASLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAKK-MQRLATLWRE 515 Query: 514 FWLDILK 520 + +K Sbjct: 516 QQQEAVK 522 >gi|291457405|ref|ZP_06596795.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213] gi|291381240|gb|EFE88758.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213] Length = 502 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 105/560 (18%), Positives = 213/560 (38%), Gaps = 68/560 (12%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + + A + IW A+ L G+ +++ V+L L+ + + + E+ Sbjct: 1 MAKKKDNTAEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQELVEE 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNA 111 G + + + F+ T+ + ++ I + ++ Sbjct: 61 -----GEGFEEDRDEYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKL 115 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I +F+ L+K L ++ F+ +++ ++ YE+ + +F Sbjct: 116 KGILPK-NFARQ--ELDKR-RLGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEG 171 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP VV ++ +YDP CG+GG + + V Sbjct: 172 KNAGEFYTPACVVKTLVEVI-----------EPYHGRVYDPCCGSGGMFVQSADFVKRHQ 220 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + +GQE P T + + IR +++D + T +DL ++ Sbjct: 221 GNIN---DISVYGQESNPTTWKMATMNLAIRGIDADLGDHNA------DTFFEDLHKTEK 271 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + L+NPPF K K K R+ G P + + ++ H+ + L N Sbjct: 272 FDFILANPPFNLKDWGGK-------KLENDVRWQYGTPPEGNANFAWVQHMIHHL----N 320 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GR +VL++ L + E EIR +++ DL+E I+A+P LF+ T I LWI++ Sbjct: 321 RSGRMGMVLANGAL--SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIIT 378 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K ++ GK I+A D+ T + + R D+ ++ + + +G Sbjct: 379 KNK--KQSGKTLFIDARDMGTMVSR---RLREFTDEDIAKVSTAFDAFHDG-----TLET 428 Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ I +IL + ++ + F + + + + Sbjct: 429 EKGFSAIATTEDIKAQDYILTPGRY------VGVAEVEEDDEPFEEKMTRLTGEIAKCFE 482 Query: 531 WAESFVKESIKSNEAKTLKV 550 + ++ K+ EA + Sbjct: 483 ESNRLQEQIKKNLEAIGYGM 502 >gi|332535596|ref|ZP_08411364.1| type I restriction-modification system, DNA-methyltransferase subunit M [Pseudoalteromonas haloplanktis ANT/505] gi|332034980|gb|EGI71501.1| type I restriction-modification system, DNA-methyltransferase subunit M [Pseudoalteromonas haloplanktis ANT/505] Length = 506 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 113/551 (20%), Positives = 199/551 (36%), Gaps = 65/551 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + +W + G + + IL L+ + + + E+Y Sbjct: 1 MTNSQINQDEINKAVWAACDTFRGTVDPSTYKDFILTMLFLKYISDVYQDEYDKLLEQYG 60 Query: 61 AFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + + + FV G SF++ E L + + K +F+D Sbjct: 61 DQPDLIHAMMAKQRFVLPKGASFWDLYEERHKAGNGQRIDQALHAIEEANGGKLKNVFQD 120 Query: 118 FDFSSTIARL----EKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 F++ +L +K +L I ++F L+ ++ N YE+LI+ F + Sbjct: 121 ISFNT--DKLGQEKQKNDILRHILEDFGKEVLNLRPSRVGSLDIIGNAYEYLIKHFAASS 178 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L A+L P + DP CG+G L + + Sbjct: 179 GKSAGEFYTPPEVSDLLAAIL----------DPQEGDQICDPACGSGSLLMKCGRMIRN- 227 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST------LSK 284 + GQE T A+ M + + + I+ G T L K Sbjct: 228 --NFNGSKKYALFGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRHPMLLDK 278 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D F +NPPF + A E GRF G+P + G F+ H+ Sbjct: 279 DGTGLLHFDIVTANPPFSLDKWGFEGADNDEF-----GRFRRGVPPKTKGDYAFISHMVE 333 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ GR +V+ LF G A E +IR L+E +L++A++ LP LFF T I Sbjct: 334 TLKPES---GRMGVVVPHGVLFRGAA---EGKIRAQLIEENLLDAVIGLPEKLFFGTGIP 387 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + I +KT+ K+ I+ + + GK + + + ++I+D Y +RE Sbjct: 388 AAILIFKKQKTD---NKILFIDGSREF----KSGKNQNQLTANNIQKIIDTYKARETVDK 440 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L + F L+ + L + + Sbjct: 441 YAYLA---------TLEEIKENDFNLNIPRYVDTFEEEAEIDLVAVRTERLQLQNELKAL 491 Query: 525 QIYPYGWAESF 535 ++ G+ + Sbjct: 492 EVKMEGYLKEL 502 >gi|94263933|ref|ZP_01287736.1| Type I restriction-modification system M subunit [delta proteobacterium MLMS-1] gi|93455678|gb|EAT05857.1| Type I restriction-modification system M subunit [delta proteobacterium MLMS-1] Length = 868 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 102/492 (20%), Positives = 184/492 (37%), Gaps = 77/492 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + + + +DL G +++ + I L+R + R +R++ G S+ Sbjct: 6 TLTHLESLLLRACDDLRGSMDASEYKEYIFGMLFLKRASDLFDQRREELRQELKQKGMSD 65 Query: 67 ID----LESFVKVAGYSFYNTSEYSLSTLGST-----------------NTRNNLE---- 101 D L+ +G FY + + + N+ Sbjct: 66 ADIAIELDDPDHYSGKYFYVPPRARWNQPWQEEVVEGGEKKTVQRPALKHVKENVGTTLN 125 Query: 102 ---SYIASFSDNA-KAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTVPDRV-M 155 + I + +A + + +F+ I R L NF I L D + Sbjct: 126 KALAAIEDANPDALQDVLSGINFNRKIGQRTLDDDTLADFVTNFEKIPLRDDDFEFPDLL 185 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 YE LI+ F + A +F TP +VV L + P ++YDPT G Sbjct: 186 GAAYEWLIKFFADSAGKKAGEFYTPWEVVRLCVEIC----------DPEEGMSIYDPTVG 235 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +GG L + + + G GQE T ++C ML+ + + Sbjct: 236 SGGMLIQMRDFLREKGGDAGELA---LFGQEKIGTTWSICKMNMLLHGI-------SHAD 285 Query: 276 IQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I+Q TL + R+ ++NPPF + + K GRF +P+ Sbjct: 286 IRQEDTLREPQHLDDSNELRRYDRVVANPPFSQNYIK--------KDLKFSGRFPVMMPE 337 Query: 331 I-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 ++F+ H+ L+ GR A V+ LF G E R++ +++ +EA Sbjct: 338 KGKKADLMFVQHMLAVLKHD----GRMATVMPHGVLFRGGE---ERAARKYFIDHGYLEA 390 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP +LF+ T I L +L+ + R V INA + EGK + + + Sbjct: 391 VIGLPGNLFYGTGIPACLLVLNKAGSAN-RDHVLFINADREY----REGKAQNHLRPEDI 445 Query: 450 RQILDIYVSREN 461 +I+ + ++ Sbjct: 446 DKIIYAFRHGDD 457 >gi|304320736|ref|YP_003854379.1| type I restriction-modification system, M subunit [Parvularcula bermudensis HTCC2503] gi|303299638|gb|ADM09237.1| type I restriction-modification system, M subunit [Parvularcula bermudensis HTCC2503] Length = 504 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 98/483 (20%), Positives = 183/483 (37%), Gaps = 51/483 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 + +W+ + G + +L L+ L +++Y Sbjct: 2 NAQVKQDEINKAVWEACDTFRGTVDAGVYKDYVLTMLFLKYLSDVWNDHYEEYKKEYGDE 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + E FV +FY + L + + + +F+D Sbjct: 62 PELINEMMKNERFVLPESANFYALYKRRHEAGNGERIDKALHAIEEANIAKLRDVFQDIS 121 Query: 120 F--SSTIARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174 F + K LL ++ ++F+ + L P + ++ N YE LI++F ++ A Sbjct: 122 FNSNKLGEEAHKNELLKELLEDFAKDKLNLRPSRIGKLDIIGNAYEFLIKQFAADSGRKA 181 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L L+ +P + DPTCG+G L V Sbjct: 182 GEFYTPPEVSELMAELV----------APKEGDEICDPTCGSGSLLMKCGKRVQIENKGS 231 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289 K +GQE T A+ M + + + I+ G T+ Sbjct: 232 KK---YALYGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPKLLDGEDSL 281 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 K F ++NPPF + + + RF G+P + G F++H+ ++ Sbjct: 282 KHFDVVVANPPFSL-----EKWGHGTAEGDKFSRFRRGIPPKTKGDYAFILHMVETMKPK 336 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GR A+V LF G S E +IR+ L+E +L++A++ LP LF+ T I + I Sbjct: 337 S---GRMAVVAPHGVLFRG---STEGKIRQKLVEENLLDAVIGLPEKLFYGTGIPATILI 390 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 L +K++ V I+A+ + GK + ++++ +I++ Y +R++ Sbjct: 391 LRKKKSDR---NVLFIDASREFI----SGKNQNQLSNNHIAKIVETYQARKSVDKYAYFA 443 Query: 470 YRT 472 Sbjct: 444 TPE 446 >gi|312879436|ref|ZP_07739236.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas paucivorans DSM 12260] gi|310782727|gb|EFQ23125.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas paucivorans DSM 12260] Length = 507 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 108/477 (22%), Positives = 183/477 (38%), Gaps = 55/477 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + L ++W A L G D+ + I P +RL + E A S Sbjct: 3 SQSQLEAYLWGAATLLRGTIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 D E + F + ++ L + + D +F D + Sbjct: 57 GDREYAALPEQHRFQIPEDAHWKATRTQVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL +L ++ ++FS L P+ + YE LI++F + A +F T Sbjct: 117 TNK-DRLPDR-MLRELIEHFSSQTLSLAHCPEDELGVGYEFLIKQFADDSGHTAAEFYTN 174 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T +L P ++YDPTCG+ G L A+ H+ + L Sbjct: 175 RTVVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE T A+ + + +E + +G TL+ F +F L Sbjct: 222 RLYGQERNLLTSAIGRMNLFLHGIE-------DFRLVRGDTLAGPAFVEGDRLMQFDVVL 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K GR G P F H+ ++ GR Sbjct: 275 ANPPYSIKQWD-----RDAWSADPWGRNIYGTPPQGRADYAFWQHIIKSMKEDT---GRC 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF E +R L+ +D++E ++ L +LF+ + + + I K + Sbjct: 327 AILFPHGVLFRNE----ELAMREKLVGHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 ERRGKV +NA + T R + + ++ +I+ Y S + F+R++ Sbjct: 383 ERRGKVLFLNAVNEVTRERA----QSFLTEEHILRIVAAYRSFTDEDSFARVVSTEE 435 >gi|167847545|ref|ZP_02473053.1| N-6 DNA methylase [Burkholderia pseudomallei B7210] gi|226198245|ref|ZP_03793816.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei Pakistan 9] gi|225929765|gb|EEH25781.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei Pakistan 9] Length = 548 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 102/547 (18%), Positives = 191/547 (34%), Gaps = 70/547 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65 L +W A+ L ++ ++L L+ + A + R+ + + Sbjct: 23 QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRAQLAAAFGNQEDDLYL 82 Query: 66 -------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 E F+ + ++ + + ++ I + + + Sbjct: 83 PDAADHAEALEERDYYTMANVFWVPASARWESIRAQAKQPDIGVRIDSALEAIEADNKSL 142 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + G L ++ S + ++ +YE+ + +F + Sbjct: 143 KGILDK----RFGRTQLEPGRLGELVDLISTVGFGEGHHAKDLLGEVYEYFLGQFATAEG 198 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV + +L + +YDP CG+GG + + G Sbjct: 199 KKGGQFYTPASVVRVLVEVLAPHEG-----------RVYDPCCGSGGMFVQSEKFIESHG 247 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE P T + + IR L +D ++ + T +D R Sbjct: 248 GKAD---DISIYGQEANPTTWRLVAMNLAIRGLAADLGKEPA------DTFHRDQHPDLR 298 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + + R+ G+P + + +L H+ + L Sbjct: 299 ADYVLANPPFNISDWGGE-------RLADDRRWAYGVPPAGNANYAWLQHILHHLSPRGQ 351 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A + S + SGE EIRR ++E D+++ +VALP LFF T I LW L+ Sbjct: 352 AGVVLA---NGSM---SSSQSGEGEIRRAMVEADVVDVMVALPPQLFFNTQIPACLWFLA 405 Query: 412 NRK----------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460 K + +RRG+V I+A L R+ +D+ +I R Sbjct: 406 KDKSGTPVPGGKPSRDRRGEVLFIDARKLGRMASRVV---RVFDDEDIARIASTVHRWRA 462 Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 +G+ Y G+ R ++V ++L E + Sbjct: 463 DGEDGADEPYADVPGFCRSVQVAEIAEHGYVLTPGRYVGAEETEDDDEAFGEKMERLTAQ 522 Query: 519 LKPMMQQ 525 L M + Sbjct: 523 LAEQMAK 529 >gi|167829997|ref|ZP_02461468.1| N-6 DNA methylase [Burkholderia pseudomallei 9] Length = 528 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 102/547 (18%), Positives = 190/547 (34%), Gaps = 70/547 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65 L +W A+ L ++ ++L L+ + A + R+ + + Sbjct: 3 QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRAQLAAAFGNQEDDLYL 62 Query: 66 -------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 E F+ + ++ + + ++ I + + + Sbjct: 63 PDAADHAEALEERDYYTMANVFWVPASARWESIRAQAKQPDIGVRIDSALEAIEADNKSL 122 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + G L ++ S + ++ +YE+ + +F + Sbjct: 123 KGILDK----RFGRTQLEPGRLGELVDLISTVGFGEGHHAKDLLGEVYEYFLGQFATAEG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV + +L + +YDP CG+GG + + G Sbjct: 179 KKGGQFYTPASVVRVLVEVLAPHEG-----------RVYDPCCGSGGMFVQSEKFIESHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE P T + + IR L +D ++ + T +D R Sbjct: 228 GKAD---DISIYGQEANPTTWRLVAMNLAIRGLAADLGKEPA------DTFHRDQHPDLR 278 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + R+ G+P + + +L H+ + L Sbjct: 279 ADYVLANPPFNISDWGGERLADDR-------RWAYGVPPAGNANYAWLQHILHHLSPRGQ 331 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A + S + SGE EIRR ++E D+++ +VALP LFF T I LW L+ Sbjct: 332 AGVVLA---NGSM---SSSQSGEGEIRRAMVEADVVDVMVALPPQLFFNTQIPACLWFLA 385 Query: 412 NRK----------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460 K + +RRG+V I+A L R+ +D+ +I R Sbjct: 386 KDKSGTPVPGGKPSRDRRGEVLFIDARKLGRMASRVV---RVFDDEDIARIASTVHRWRA 442 Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 +G+ Y G+ R ++V ++L E + Sbjct: 443 DGEDGADEPYADVPGFCRSVQVAEIAEHGYVLTPGRYVGAEETEDDDEAFGEKMERLTAQ 502 Query: 519 LKPMMQQ 525 L M + Sbjct: 503 LAEQMAK 509 >gi|150401947|ref|YP_001329241.1| N-6 DNA methylase [Methanococcus maripaludis C7] gi|150032977|gb|ABR65090.1| N-6 DNA methylase [Methanococcus maripaludis C7] Length = 501 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 104/538 (19%), Positives = 199/538 (36%), Gaps = 59/538 (10%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK A+ L G+ +D+ V+L L+ + A E + + + E Sbjct: 10 LWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYNQLLLEVKDGADPEDPDEYKSN 69 Query: 75 VAGYS-FYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126 + G S F+ E + +++ I + K I + T+ + Sbjct: 70 IHGKSVFWVPKESRWEYIQERAKLDSIGVVIDGAMELIEKENSRLKGILPKEYANPTLDK 129 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L ++ I L ++ +YE+ + +F S + +F TP +V L Sbjct: 130 ----RRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPDCIVKL 185 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V + + +GQE Sbjct: 186 LVEMI-----------EPYKGRVYDPCCGSGGMFVQSEKFVIEHSGKIN---DISIYGQE 231 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +E+D I+ G + DL + + L+NPPF Sbjct: 232 SNPTTWKLANMNLAIRGIEAD--------IKFGDSFHNDLHPDLKADFILANPPFNISDW 283 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + R+ G+P + + ++ H+ + L G A + S Sbjct: 284 GG-------NLLTDDKRWKHGVPPTGNANFAWVQHMIHHLSTTGIAGFVLA---NGSMSS 333 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 N S E EIR ++ L++AIVALP+ LF+ T I LW + K +G+ I+ Sbjct: 334 N---TSSEGEIRTNIINAGLVDAIVALPSQLFYNTQIPACLWFIRRGKEVR-KGETLFID 389 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLR 485 A ++ I K R + ++ ++I +Y S NG+ + G+ + + + Sbjct: 390 AREMGEMISR---KNRSLTEEDIKKIAGVYHSWRNGEGYEDVP----GFCKSSDISDIEK 442 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 FIL + + + ++ + + + +KE++K Sbjct: 443 QGFILTPGRYVGFKEE---EDDGIPFEEKMESLVSELKKTFEEGEILDKRIKENLKKL 497 >gi|237653814|ref|YP_002890128.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp. MZ1T] gi|237625061|gb|ACR01751.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp. MZ1T] Length = 508 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 118/529 (22%), Positives = 204/529 (38%), Gaps = 62/529 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +++W A L G D+ + I P +R+ + + S+ Sbjct: 6 TQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWDEEYEVALAE------SD 59 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDNAKA-IFEDFDF 120 DL + F + + + T N ++ I S + + IF D + Sbjct: 60 GDLSYAKFAENHRFQIPAGAHWNDVRQTPRNVGAAIQQAMRAIESANPDLLDGIFGDAPW 119 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL L + ++FS L VP+ + N YE+LI++F + A +F T Sbjct: 120 TNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 177 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T LL +P ++YDPTCGTGG L A++ V G ++ Sbjct: 178 RTVVHLMTQLL----------APQADESIYDPTCGTGGMLISALDEVKRSGGEYRTLK-- 225 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE T ++ + + +E I +G TL++ +RF L Sbjct: 226 -LYGQERNLITSSIARMNLFLHGVE-------DFQIIRGDTLAEPRHIEGDRLRRFDVIL 277 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K + + GR G P F H+ L GR Sbjct: 278 ANPPYSIKQWD-----REAWTQDKWGRNFLGTPPQGRADYAFQQHILGSLSDR----GRC 328 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF E +R ++E D +EA+V L +LF+ + + + + I + RK Sbjct: 329 AILWPHGVLFRNE----EQAMRSKMIEQDWVEAVVGLGPNLFYNSPMESCILICNRRKPA 384 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLD 469 ER+G+V I+A T R + + + +++IL + + + + + Sbjct: 385 ERQGRVLFIDAVGEVTRERA----QSFLKPEHQQRILGAFKAFADAPGFARVATLAELHK 440 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + V RP + G W ++FW + Sbjct: 441 NAGNLSIPLYVKRPSASAAAAAAGGDQPASLAEAWDAWQESGRAFWQQM 489 >gi|295101615|emb|CBK99160.1| Type I restriction-modification system methyltransferase subunit [Faecalibacterium prausnitzii L2-6] Length = 514 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 104/550 (18%), Positives = 195/550 (35%), Gaps = 74/550 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + IW A L G+ +++ V+L L+ + E + + Sbjct: 1 MAEKNTADIGFEKQIWDAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVA--- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113 G + + + F+ + S + + ++ I + K Sbjct: 58 --DGDGFEEDRDEYTSEGIFFVPAGARWSDVSAKAHDPEIGQVIDDAMRAIEKENARLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L ++ F+ I++ ++ YE+ + F + + Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP VV +L +YDP CG+GG + V + + Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------QPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQ+ P T + + IR +E D + + T D R Sbjct: 221 IN---DISIYGQDSNPTTWKLAQMNLAIRGIEPDLGKYAA------DTFLDDQHPTMRAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y ++NPPF + + + R+ G+P S+ + +L H+ L G Sbjct: 272 YIMANPPFNLSNWGAE-------QLKDDVRWQYGMPPASNANFAWLQHMIYHLAP----G 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE +IR+ ++ DL++ I+A+PT LF+ T I LW +S R Sbjct: 321 GRMGMVLANGSL--SSQSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKR 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND--------------DQRRQILDIYVSR 459 K +R GK I+A + + K R + D + ++I D Y + Sbjct: 379 K--KRAGKTLFIDARKMGVMVSR---KLRELTDGTKEEYKNEDGTSKNDIKKIADTYNAY 433 Query: 460 ENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 NG G+ + + +IL +E + + Sbjct: 434 VNG-----TLEDVKGFCAVVDTEKIAEQDYILTPGRYVGVEEQEDDGEPFEEKMARLTSE 488 Query: 519 LKPMMQQIYP 528 L + +Q + Sbjct: 489 LSDLFKQSHK 498 >gi|251772354|gb|EES52922.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum] Length = 522 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 175/468 (37%), Gaps = 63/468 (13%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +W+ A+ L + ++ V+L L+ + + E + + + E Sbjct: 17 LEAKLWQAADKLRNNMDAAEYKHVVLGLLFLKYVSDSFEEHHAKLTNEVSQGANPEDPDE 76 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSST 123 A F+ E S L + R + I + + K + Sbjct: 77 Y---RADNVFWVPKEARWSVLQANAKRPEIGKVIDDAMVAIERDNKSLKGVLPKDYARPG 133 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + + L ++ I L ++ +YE+ + +F S + F TPR Sbjct: 134 LDK----QRLGELIDLVGTIGLGDKEHRSRDMLGRVYEYFLSQFASAEGKRGGQFYTPRS 189 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV + +L +YDP CG+GG + + G + Sbjct: 190 VVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEVHGGRIG---DISI 235 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T + + IR + ++ ++ + + KDL + Y L+NPPF Sbjct: 236 YGQESNHTTWKLAAMNLAIRGIAANLGQENA------DSFHKDLHPDLKADYILANPPFN 289 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + E R+ G+P + + + ++ H + L G A VL++ Sbjct: 290 SSDWGGD-------RLREDRRWVYGVPPVGNANFAWVQHFISHLAP----NGVAGFVLAN 338 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415 L SGE EIR+ ++E D+++ IVALP LF+ T I LW +S K Sbjct: 339 GSL--SSNQSGEGEIRKNMVEADVVDCIVALPGQLFYSTQIPVSLWFVSRNKKNGKGLEG 396 Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSR 459 +R G++ I+A L + + R R ++D+ +I Y + Sbjct: 397 KPLRDRSGEILFIDARKLGFMADRT----HRDLSDEDIAKIAGTYHNW 440 >gi|27380125|ref|NP_771654.1| type I restriction-modification system specificity subunit [Bradyrhizobium japonicum USDA 110] gi|27353279|dbj|BAC50279.1| type I restriction-modification system specificity subunit [Bradyrhizobium japonicum USDA 110] Length = 879 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 187/463 (40%), Gaps = 57/463 (12%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76 K ++L G+ +++ + I L+R + R + A G LE+ ++ Sbjct: 15 KACDELRGNMDASEYKEYIFGVLFLKRCSDLFDQQREKLTVNLRARGLDGQRLEALLESR 74 Query: 77 G-YSFYNTSEYSLST---LGST---NTRNNLESYIASFSDNAKAIFEDFDFSSTI--ARL 127 Y+FY + +T L L D + + E +F+ I L Sbjct: 75 DQYTFYVPPQARWATVRHLKEDVGNGLNAALGELERHNKDQLEDVLEHINFNRKIGQRTL 134 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + F I L + + YE+LI+ F + A +F TP DVV Sbjct: 135 SD-DTLVDFLQVFENIPLRDENFEFPDLLGAAYEYLIKYFADSAGKKAGEFYTPADVVRT 193 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ P ++YDPT G+GG L + ++V D G P L GQE Sbjct: 194 MVEIV----------DPQPGMSIYDPTVGSGGMLIQSRDYVRDNGGD---PNNLSLAGQE 240 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPF 301 + T ++C M++ + S +I+Q +TL+K G RF L+NPPF Sbjct: 241 SQGTTWSICRMNMILHDI-------QSADIRQENTLTKPQHRGDDGELIRFDRVLANPPF 293 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + + GRF +P+ ++F+ H+ L+ GGR A V+ Sbjct: 294 SQSYSA--------KDMEFKGRFVKWMPEKGKKADLMFVQHMLAVLKS----GGRMATVM 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 LF G E + R ++ ++A++ LP LF+ T I + ++S + + R Sbjct: 342 PHGVLFRGGE---EKDAREHFIKQGWLDAVIGLPPSLFYGTGIPACILVMSKER-ADLRK 397 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 V INA + EGK + + + +I+D+Y R++ Sbjct: 398 DVLFINADREY----REGKAQNFLRPEDMSKIVDVYRRRQDVP 436 >gi|159904435|ref|YP_001548097.1| N-6 DNA methylase [Methanococcus maripaludis C6] gi|159885928|gb|ABX00865.1| N-6 DNA methylase [Methanococcus maripaludis C6] Length = 501 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 106/538 (19%), Positives = 198/538 (36%), Gaps = 59/538 (10%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK A+ L G+ +D+ V+L L+ + A E + + E Sbjct: 10 LWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYKQLLLEVKDGADPEDPDEYKSN 69 Query: 75 VAGYS-FYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126 + G S F+ E + +++ I + K I + T+ + Sbjct: 70 IHGKSVFWVPKESRWEYIQELAKLDSIGIVIDSAMELIEKENSRLKGILPKEYANPTLDK 129 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L ++ I L ++ +YE+ + +F S + +F TP +V L Sbjct: 130 ----RRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPDCIVKL 185 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ P R +YDP CG+GG + V + + +GQE Sbjct: 186 LVEMI----------GPYKGR-VYDPCCGSGGMFVQSEKFVIEHSGRIN---DISIYGQE 231 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +E+D I+ G + DL + + L+NPPF Sbjct: 232 SNPTTWKLANMNLAIRGIEAD--------IKFGDSFHNDLHPDLKADFILANPPFNISDW 283 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + R+ G P + + ++ H+ + L G A + S Sbjct: 284 GG-------NLLTDDKRWKYGTPPTGNANFAWVQHMIHHLSTTGIAGFVLA---NGSMSS 333 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 N S E EIR ++ L++AIVALP+ LF+ T I LW + K G+ I+ Sbjct: 334 N---TSSEGEIRTNIINAGLVDAIVALPSQLFYNTQIPACLWFVRRGKDVR-NGETLFID 389 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLR 485 A ++ I K R + ++ ++I +Y S NG+ + G+ + + + Sbjct: 390 AREMGEMISR---KNRSLTEEDIKKIAGVYHSWRNGEGYEDVP----GFCKSSDISDIEK 442 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 FIL + + + ++ + + + +KE++K Sbjct: 443 QGFILTPGRYVGFKEE---EDDGIPFEEKMESLVSELKKTFEEGEILDKQIKENLKKL 497 >gi|326386412|ref|ZP_08208035.1| type I restriction-modification system, M subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326209073|gb|EGD59867.1| type I restriction-modification system, M subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 505 Score = 329 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 108/474 (22%), Positives = 185/474 (39%), Gaps = 57/474 (12%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESF 72 W + G + IL L+ + + R+++ A ++ E F Sbjct: 15 WAACDTFRGAVDAGQYKDYILVMLFLKYISDQWNEHVESYRQQFGGDEARIRRRLERERF 74 Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR---LEK 129 V G SFY+ E LE+ ++ + +F + DF+S ++ Sbjct: 75 VLPEGASFYDLHERRNEANIGELINEALEAIESTNIAKLEGVFRNIDFNSESNLGRVKDR 134 Query: 130 AGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L + ++F+ ++L P V + ++ Y +LI RF S+ + A +F TP V L Sbjct: 135 NRRLKNLLEDFAKPALDLRPSRVSEDIIGECYIYLISRFASDAGKKAGEFYTPSAVSGLL 194 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L +P T+ DP CG+G L A V +GQE+ Sbjct: 195 ARL----------ANPQPGNTICDPACGSGSLLIQASQQVGSDN--------FALYGQEV 236 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGK 303 T A+ M + + I+ TL+ +F L+NPPF Sbjct: 237 NGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDHLMKFDVVLANPPFSL 289 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + A + K RF G+P S G F+ H+ + GR A+++ Sbjct: 290 DKWGAEHAGDDPFK-----RFWRGIPPKSKGDYGFISHMIEIAKRQT---GRVAVIVPHG 341 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERR 419 LF G GE IR+ L+E +L++A++ LP +LF T I + + + E R Sbjct: 342 VLFRGG---GEGTIRKALIEENLLDAVIGLPANLFTTTGIPVAILVFDRSREEGGANADR 398 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472 V I+A+ T GK + ++++ I++ Y +R E K+S + Sbjct: 399 RDVLFIDASRDCTP----GKTQNLLDEGHIDHIVETYRARAEEPKYSHRASLQE 448 >gi|312963116|ref|ZP_07777601.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6] gi|311282627|gb|EFQ61223.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6] Length = 507 Score = 329 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 114/540 (21%), Positives = 203/540 (37%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 + + +W + G + IL L+ + + +++Y Sbjct: 2 NDKVNQDDINKALWAACDIFRGTISADTYKDFILTMLFLKYISDVWQDHYDNYKKEYGDE 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + E FV SFY E+ L + + K +F Sbjct: 62 PELIEEMLKNERFVLSRDASFYTLYEHRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L + +NF+ EL+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDKLGEEKQKNTILRHLMENFARAELNLKPSRVGSLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+ L V + Sbjct: 182 GQKAGEFYTPPEVSELIAELL----------DPQPGDTICDPACGSASLLMKCGRKVREH 231 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 S +GQE T ++ M + + + I+ G TL + Sbjct: 232 HSS----KQYALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTLRNPKLLDQ 280 Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 +F +NPPF +E ++ GRF G+P + G F++H+ Sbjct: 281 NGQLLKFDIVTANPPFSLD-----KWGHEEAEHDPFGRFNRGIPPKAKGDFAFILHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GR A+V+ LF G S E +IR+ L+E +L++A++ LP LF+ T I Sbjct: 336 LKAKT---GRMAVVVPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + + S KT+E V I+A+ + GK + ++ ++Q IL Y R N + Sbjct: 390 AILVFSKAKTDE---NVLFIDASRDF----KAGKNQNLLGEEQINNILLTYRHRINSDKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 S + + P + ++T + L ++L + L + + + + Sbjct: 443 SHRTSLQEIRDNDYNLNIPRYVDTFEEETEIDLLAVRKERQQLKTQLAALELQMDEYLKE 502 >gi|30250443|ref|NP_842513.1| type I restriction-modification system methylation subunit [Nitrosomonas europaea ATCC 19718] gi|30139284|emb|CAD86436.1| possible type I restriction-modification system methylation subunit [Nitrosomonas europaea ATCC 19718] Length = 504 Score = 329 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 120/545 (22%), Positives = 215/545 (39%), Gaps = 62/545 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L +++W A L G D+ + I P +R+ + A S Sbjct: 5 SQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALA------NSG 58 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDNAKA-IFEDFDF 120 DL + F + + + T N ++ I S + + IF D + Sbjct: 59 GDLSYAQFAENHRFQIPAGAHWNDVRQTPKNVGAAIQKAMRAIESANPDLLDGIFGDAPW 118 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL L + ++FS L VP+ + N YE+LI++F + A +F T Sbjct: 119 TNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 176 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T LL +P ++YDPTCGTGG L A++ V G ++ Sbjct: 177 RTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRAGGEYRTLK-- 224 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE T ++ + + +E I +G TL++ ++F L Sbjct: 225 -LYGQERNLITSSIARMNLFLHGVEDFE-------IIRGDTLAEPKHIEGDRLRQFDVIL 276 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K + + + GR G P F H+ L GR Sbjct: 277 ANPPYSIKQWN-----REAWSSDKWGRNSLGTPPQGRADYAFQQHILTSL----TAKGRC 327 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A++ LF E +R ++E D +EA++ L +LF+ + + + + I + +K Sbjct: 328 AVLWPHGVLFRNE----EQSMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKAA 383 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 R+GKV I+A + R + + + +++IL Y + + F+++ G Sbjct: 384 ARKGKVIFIDAVNEVARERA----QSFLKPEHQQRILTAYKTFADVPGFAKVATLAEIGA 439 Query: 476 RRIKVLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFW--LDILKPMMQQIYPY 529 + PL + I + + W + ++FW +D L + + Sbjct: 440 NAGNLSIPLYVKRIAAAIATDSNDDAVSLRSAWDQWQADGRAFWQQMDALVETLDGLVAQ 499 Query: 530 GWAES 534 A++ Sbjct: 500 EAADA 504 >gi|88604024|ref|YP_504202.1| N-6 DNA methylase [Methanospirillum hungatei JF-1] gi|88189486|gb|ABD42483.1| N-6 DNA methylase [Methanospirillum hungatei JF-1] Length = 532 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 108/560 (19%), Positives = 197/560 (35%), Gaps = 69/560 (12%) Query: 6 GSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 +AA+L +W A+ L + ++ V+L L+ L A E S++ + Y Sbjct: 10 TTAANLGFEATLWAAADKLRNNMDAAEYKHVVLGLIFLKYLSDAFEEKHSSLEQAYSDPQ 69 Query: 64 GS----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIAS 106 + + + + F+ E S + R + I Sbjct: 70 STWYIAEPEVRYGVIEDPDEYRSENIFWIPKEARWSYIQQNAKRPEIGKIVDDAMYAIER 129 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165 + K I + + L ++ + L + ++ +YE+ + Sbjct: 130 DNAVLKNILPKEYARPGLDK----EKLGELIDLIGTLNLSDSENRSKDIIGRVYEYFLSE 185 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F S + F TPR VV A++ +YDP CG+GG + Sbjct: 186 FASAEGKNGGQFYTPRCVVQTLVAMI-----------SPFKGRVYDPCCGSGGMFVQSEK 234 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 V G + +GQE P T + + IR ++ D + + +D Sbjct: 235 FVEAHGGRIG---DISIYGQESNPTTWKLAKMNLAIRGIDHDLGA------EHADSFRRD 285 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 L + Y L+NPPF K ++ + R+ G+P + + ++ H + Sbjct: 286 LHATLKADYILANPPFNMKDWGGEN-------LKDDVRWRYGIPPTGNANYAWIQHFIHH 338 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L G A + S N SGE EIR+ LLE DL++ +VALP LF+ T I Sbjct: 339 LSPSGIAGFVLA---NGSMSSN---QSGEGEIRKNLLEADLVDCMVALPGQLFYSTQIPA 392 Query: 406 YLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 LW ++ ++ +RRG+V I+A + R + D+ +I Y + Sbjct: 393 CLWFVARNRSNGRFRDRRGEVLFIDARKMGVMRDRT---HRELTDEDIERIAGTYHAWR- 448 Query: 462 GKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 G S G+ + + +L E + K Sbjct: 449 GDASAGEYEDVPGFCASATLEEIAKHGHVLTPGRYVGAEDA---EDDGEPFAEKMTRLTK 505 Query: 521 PMMQQIYPYGWAESFVKESI 540 + +Q+ + +K+++ Sbjct: 506 QLSEQMEDGARLDEEIKKNL 525 >gi|323699619|ref|ZP_08111531.1| type I restriction-modification system, M subunit [Desulfovibrio sp. ND132] gi|323459551|gb|EGB15416.1| type I restriction-modification system, M subunit [Desulfovibrio desulfuricans ND132] Length = 502 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 103/485 (21%), Positives = 188/485 (38%), Gaps = 54/485 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + + ++K + G + + IL ++ L + +++ Sbjct: 1 MTTTKVNQKEINDILFKACDTFRGILNASQYKDYILAMLFVKYLSDVYRERYDELSQQFK 60 Query: 61 AFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + E FV G +FY+ + +T E + + +F + Sbjct: 61 GDKERIGRRLARERFVMPEGCTFYDLYDQRNATNVGEVINTTFEKIEDANRAKLQGVFRN 120 Query: 118 FDFS---STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171 D++ + ++ L K ++ + ++L P V + V+ N YE+LI F + Sbjct: 121 IDYNSEANLGKTKDRNRRLKKFLEDLNDPRLDLRPSRVGNLDVIGNAYEYLIANFAAGAG 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP +V L L+ +P + DP CG+G L N V Sbjct: 181 KKAGEFYTPPEVSELIAELV----------APQPGERICDPACGSGSLLIKCGNRVRWTS 230 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290 +GQE+ ET A+ M + ++ ++ G TL + Sbjct: 231 ED------FSLYGQEINGETWALAKMNMFLHGMD-------RARVEWGDTLREPKLIEDD 277 Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 +F ++NPPF K A H RF GLP S F+ H+ E Sbjct: 278 TTMKFEVVVANPPFSLDKWGYKSAQSDPH-----NRFHRGLPPKSKADYAFISHMI---E 329 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR +V+ LF G A E +IR+ L+E +L++A++ LP +LFF T I + Sbjct: 330 TTTLESGRVGVVVPHGVLFRGGA---EGKIRQQLIEENLLDAVIGLPANLFFGTGIPAAI 386 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + + ++ V I+A+ + +N + + + R+I+D Y +RE Sbjct: 387 LVFKRNRPDK---DVLFIDASREYADAKN----QNKLRPENVRKIVDTYKAREFVDKYAY 439 Query: 468 LDYRT 472 + Sbjct: 440 VAGFD 444 >gi|94263483|ref|ZP_01287295.1| N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93456121|gb|EAT06264.1| N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 517 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 90/483 (18%), Positives = 175/483 (36%), Gaps = 61/483 (12%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MTE T + A+L N +W A+ + G ++ V+L L+ + A + + + Sbjct: 1 MTEKTTNGANLGFENKLWIMADKMRGHMDAGEYKHVVLGLIFLKYISDAFQGKYDEL--E 58 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111 + A F+ E + + + + I + + Sbjct: 59 ATRDTEYTDPEDRDEYAAANIFWVPKEARWDKVQAEAPQPTIGKAIDEAMVALERENPSL 118 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170 K + + + L ++ K I+L + +YE+ + +F + Sbjct: 119 KGVLPKDYSRPALDK----TRLGELVKTVGDIDLQARQSGVQDPLGRVYEYFLGKFAAAE 174 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP+ VV L ++ ++DP CG+GG + V Sbjct: 175 GKSGGEFYTPQCVVQLLVEMI-----------EPYKGRVFDPCCGSGGMFVQSERFVEAR 223 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G + +GQE P T + + IR +++D DL Sbjct: 224 GGRLG---DIAVYGQESNPTTWKLAKMNLAIRGIDADLGPH------HADCFHNDLHKDL 274 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + Y L+NPPF + + R+ G P ++ + ++ H + L Sbjct: 275 KADYILANPPFNMSDWGSD-------RLRDDVRWKYGTPPANNANYAWIQHFIHHLAPDG 327 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G A + S + S E IR+ +++ D+I+ +VALP LF+ T I LW + Sbjct: 328 IAGFVMA---NGSM---STSTSSEGAIRQAMIDQDMIDCMVALPGQLFYTTQIPVCLWFV 381 Query: 411 SNRKTEERR-------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461 + K + + G+ I+A L + I R ++ + I +Y + ++ Sbjct: 382 TRSKKADPKRGLRDRSGETLFIDARRLGSLIDRV---HRELSTADIKTITGVYHNWRNQD 438 Query: 462 GKF 464 G + Sbjct: 439 GDY 441 >gi|78777140|ref|YP_393455.1| Type I restriction-modification system M subunit [Sulfurimonas denitrificans DSM 1251] gi|78497680|gb|ABB44220.1| Type I restriction-modification system M subunit [Sulfurimonas denitrificans DSM 1251] Length = 495 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 108/541 (19%), Positives = 203/541 (37%), Gaps = 69/541 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + +++ N +WK + G +D+ +L ++ L + ++ +Y Sbjct: 4 TTQSTINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLDLLKAEYGDKTDR 63 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFED 117 K+ F + L NL + + + IF Sbjct: 64 IEA-----KLKREKFRLDESCTFDYLIKHKEAPNLGEIMNKVLERIEEDNRDKLEGIFRS 118 Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171 DF++ E+ +L + ++FS ++L P + + V+ + YE+LI F S+ Sbjct: 119 IDFNNKNKLGDTKERNTILKNLIEDFSDTRLDLRPSRLEGNDVIGDAYEYLISHFASDAG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +V L L+ P +YDPTCG+G L A + Sbjct: 179 KKGGEFYTPSEVSTLLAKLV----------EPKEGEMIYDPTCGSGSLLIKASKEIGSKN 228 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287 +GQE +T A+C M + + I+ G T+ L Sbjct: 229 --------FRLYGQEKNGQTQALCKMNMFLHEINDAV-------IEWGDTIRNPLHLQDN 273 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 K F ++NPPF ++ A + GRF G P S G F++H+ + L Sbjct: 274 LLKTFDVVVANPPFSLDKWGEEIASDDSF-----GRFKYGTPPKSKGDYAFVLHMISSLN 328 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ ++L LF G E +IR L+E +L++ ++ LP++LFF T+I + Sbjct: 329 SH----GKMGVILPHGVLFRGA---SEGKIREKLIEQNLLDTVIGLPSNLFFGTSIPACI 381 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 I + I+A+ + GK + + D+ +I D Y +R + +S Sbjct: 382 LIFKKN---RVHNDILFIDASREFEK----GKNQNNLTDEHIAKIFDTYKNRSEIEKYSH 434 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + + P R ++ + L+A T + + ++++ Sbjct: 435 VATLEEIQENDYNLNIP-RYVDTFEEEEIIDLDATKTNIATIEIELVEIKSKMNGYLKEL 493 Query: 527 Y 527 Sbjct: 494 G 494 >gi|146297671|ref|YP_001181442.1| type I restriction-modification system, M subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411247|gb|ABP68251.1| type I restriction-modification system, M subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 814 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 108/487 (22%), Positives = 204/487 (41%), Gaps = 52/487 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + L ++K A+ L G +++ + I L+ + E R +++++ Sbjct: 1 MAGDKITLRQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYISDVFEEKRHELKDRFK 60 Query: 61 AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAK 112 A G S + ++ G +F+ + + + N L +++ + Sbjct: 61 AMGFSERQIHELLEDPSSYGDAFFVPEKARWGNILKLKEDVGNQLNKALSALEEANPELD 120 Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170 + + DF++ K L + +F+ +L P + YE+L++ F Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ P ++YDPT G+GGFL +A ++V + Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 G + P L +GQEL T ++C M++ + +I+ L+ +F Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIN-------DAHIENEDVLTTPMFLEN 280 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 KRF L+NPPF + + + E+ K G G ++FL H+ L Sbjct: 281 GYIKRFDRILANPPFSENYTRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G A V+ LF G E IR ++ +DLIEAI+ LP LF+ T I Sbjct: 335 KDD----GVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + +++ K E + K+ INA + G+ + + + +I+ ++ ++ K+S Sbjct: 388 IIVINKNKPEHLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFDEKKEIPKYS 443 Query: 466 RMLDYRT 472 R++D + Sbjct: 444 RLVDIKE 450 >gi|188492079|ref|ZP_02999349.1| type I restriction-modification system, M subunit [Escherichia coli 53638] gi|188487278|gb|EDU62381.1| type I restriction-modification system, M subunit [Escherichia coli 53638] gi|322616182|gb|EFY13098.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620877|gb|EFY17736.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623032|gb|EFY19874.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628322|gb|EFY25110.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634727|gb|EFY31458.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638706|gb|EFY35401.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322646506|gb|EFY43015.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649129|gb|EFY45570.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654495|gb|EFY50817.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660786|gb|EFY57019.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665112|gb|EFY61300.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667856|gb|EFY64016.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671732|gb|EFY67853.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677222|gb|EFY73286.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680115|gb|EFY76154.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685456|gb|EFY81452.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193665|gb|EFZ78869.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199972|gb|EFZ85060.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204703|gb|EFZ89700.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205731|gb|EFZ90694.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213701|gb|EFZ98484.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216764|gb|EGA01488.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223409|gb|EGA07739.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231920|gb|EGA16027.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234447|gb|EGA18534.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237898|gb|EGA21957.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243501|gb|EGA27520.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249498|gb|EGA33412.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254258|gb|EGA38076.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255083|gb|EGA38869.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261255|gb|EGA44843.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266620|gb|EGA50107.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271346|gb|EGA54772.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 507 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 107/540 (19%), Positives = 199/540 (36%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S ++ +W + G + IL L+ + + +E+Y Sbjct: 2 NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYTLYERRYEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G +L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F+ H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + I +K KV I+A+ + GK + ++ + ++I++ Y +N + + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREY----KAGKNQNQLSAENIQKIVNTYREGDNVEKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + P + ++ + L +L ++ + + Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRSEREQLKVELAKLETEMAGYLKE 502 >gi|320450633|ref|YP_004202729.1| type I restriction-modification system subunit M [Thermus scotoductus SA-01] gi|320150802|gb|ADW22180.1| type I restriction-modification system, subunit M [Thermus scotoductus SA-01] Length = 523 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 108/480 (22%), Positives = 192/480 (40%), Gaps = 63/480 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 ++ N++W A + G F ILP L+RL E + + ++ + + Sbjct: 4 QTMENWLWSAACAIRGPVDAPKFKDYILPLIFLKRLSDVFEDEIARLSARFGSEKVARDL 63 Query: 69 LESFVKVAGY----SFYNTSEYSLSTLGST--NTRNNLESYIAS---FSDNAKAIFEDFD 119 +E + G FY E + L + + + + + D Sbjct: 64 VEK-ERQRGNVTLVRFYIPEEARWEAIRRQTVGLGQFLTDAVRAVARENPQLAGVIDMVD 122 Query: 120 FSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F++T R+ L + + S L V ++ YE+L+R+F + A +F Sbjct: 123 FNATAAGQRIVSDEHLKSLIEVLSQHRLGLADVEPDILGRAYEYLLRKFAEGQGQSAGEF 182 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR+V L LL P ++YDP CG+GG L + + Sbjct: 183 YTPREVGILMARLL----------EPEPGMSVYDPACGSGGLLIKCHLRLVEKYGQKDPS 232 Query: 238 PILVP---------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 L GQE+ P T A+ +I +E+D I+ G T+ + F Sbjct: 233 GRLHLPSTIAPLRVFGQEINPATFAMARMNAVIHDIEAD--------IRLGDTMRQPAFR 284 Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F +NP + +K+ ++ ++N RF G+P S +L H+ Sbjct: 285 DGSGRLQTFDLIAANPMWNQKFPQEL------YENDPFERFRYGVPPSSSADWGWLQHML 338 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400 L N GR A+VL + + G G E +IR+ +E DL+EA++ LP +LF+ Sbjct: 339 ASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRKAFVEADLVEAVILLPENLFYN 394 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T + +++ RK G++ LINA+ + G+ + + ++ I ++Y E Sbjct: 395 TTAPGVILVINRRK--RHPGEILLINASQQFAK----GRPKNYLAEEHIETIAEVYHRWE 448 >gi|291514833|emb|CBK64043.1| type I restriction system adenine methylase (hsdM) [Alistipes shahii WAL 8301] Length = 508 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 105/544 (19%), Positives = 190/544 (34%), Gaps = 77/544 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W+ + G + + IL L+ + + ++Y Sbjct: 6 TQEEINKVVWQACDTFRGVIDPSQYKDYILTMLFLKYVSDVSKAKYKEYLQRY-----DG 60 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDNAKA 113 + + F + S L +N+ I S++ Sbjct: 61 DTERAQRAMRRERFQVPEKSSFDYLFEHRNESNIGELIDIALADLEFANREKLSSEDGSG 120 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGS 168 IF + F+ + E+ L ++ +FS L D + V+ + Y LI +F S Sbjct: 121 IFRNISFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLENNDVIGDAYMFLIEKFAS 180 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + A +F TP++V L L + DPTCG+G L A V Sbjct: 181 DAGKKAGEFFTPKEVSTLLARL----------TKSAPGSRICDPTCGSGSLLIKAGREVG 230 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 +GQEL T A+ + ML+ + S I+ G TL Sbjct: 231 SDN--------FSLYGQELNGSTWALAMMNMLLHGFD-------SATIRWGDTLRNPKLK 275 Query: 289 G----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 +F ++NPPF + E + RF G+P S G F Sbjct: 276 EGDALMKFDTVVANPPFSL-----EKWGADEAADDPYNRFWRGIPPKSKGDWAF----IC 326 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 + N G+ +V+ LF G E +IR+ +E +L+EAI+ LP +LF+ T I Sbjct: 327 HMLEVANEHGKVGVVVPHGVLFRGA---SEGKIRQQTVEENLVEAIIGLPANLFYGTGIP 383 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + I + KT V I+A+ + + GK + + + I+ Y + Sbjct: 384 AAIAIFNKAKT---TTDVLFIDASREFEN----GKNQNRLRKEDIDHIVTTYRRFAKSEL 436 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ + + Y V R R + L T+ + + + + + Sbjct: 437 AQGVVEERYAY----VAR--REELADNDYNLNIPRYVDTFEEEPEIDIAAIQREIDALET 490 Query: 525 QIYP 528 ++ Sbjct: 491 ELAE 494 >gi|313157419|gb|EFR56841.1| type I restriction-modification system, M subunit [Alistipes sp. HGB5] Length = 508 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 101/479 (21%), Positives = 172/479 (35%), Gaps = 71/479 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W+ + G + + IL L+ + + ++Y Sbjct: 6 TQEEINKVVWQACDTFRGVIDPSQYKDYILTMLFLKYVSDVSKAKYKEYLQRY-----DG 60 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDNAKA 113 + + F + S L N+ I S++ Sbjct: 61 DTERAQRAMRRERFQVPEKSSFDYLFEHRNEPNIGELIDIALADLEFANREKLSSEDGSG 120 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168 IF + F+ + E+ L ++ +FS L D + V+ + Y LI +F S Sbjct: 121 IFRNISFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLANNDVIGDAYMFLIEKFAS 180 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + A +F TP++V L L + DPTCG+G L A V Sbjct: 181 DAGKKAGEFFTPKEVSSLLARL----------TKSAPGSRICDPTCGSGSLLIKAGREVG 230 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 +GQEL T A+ + ML+ + S I+ G TL Sbjct: 231 SDN--------FSLYGQELNGSTWALAMMNMLLHGFD-------SATIRWGDTLRNPKLK 275 Query: 289 G----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 +F ++NPPF + E + RF G+P S G F Sbjct: 276 EGDALMKFDTVVANPPFSL-----EKWGADEAADDPYNRFWRGIPPKSKGDWAF----IC 326 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 + N G+ +V+ LF G E +IR+ +E +L+EAI+ LP +LF+ T I Sbjct: 327 HMLEVANEHGKVGVVVPHGVLFRGA---SEGKIRQQTVEENLVEAIIGLPANLFYGTGIP 383 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I + KT V I+A+ + + GK + + D+ I+ Y G+ Sbjct: 384 AAIAIFNKAKT---TTDVLFIDASREFEN----GKNQNRLRDEDIDHIVTTYRRFAQGE 435 >gi|325110947|ref|YP_004272015.1| Site-specific DNA-methyltransferase (adenine-specific) [Planctomyces brasiliensis DSM 5305] gi|324971215|gb|ADY61993.1| Site-specific DNA-methyltransferase (adenine-specific) [Planctomyces brasiliensis DSM 5305] Length = 560 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 109/574 (18%), Positives = 200/574 (34%), Gaps = 86/574 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + T S S A+ +WK A+ L G ++ V+L L+ + + + R + + Sbjct: 1 MNDQTASDLSYADTLWKAADALRGQVDAAEYKHVVLGLLFLKYISDSFQSRRDELEAELT 60 Query: 61 AFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108 + G LE+ ++ A F+ E + L TR ++ + I + Sbjct: 61 SDGIKGEQLENLLESRDEYTAERVFWVPPESRWTNLQDQATRPDIATLIDDAILAVERDN 120 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167 N K+ I ++ L + + I + + +YE+ + +F Sbjct: 121 PNLKSKLPRDYARRGIEPVK----LKGLIDLIADIGFNGTREKARDTLGRVYEYFLGKFA 176 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + +F TPR +V + +L +YDP CG+GG + V Sbjct: 177 AAEGKLGGEFYTPRSIVRVLVEML-----------EPYQGRIYDPACGSGGMFVQSEKFV 225 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + + GQE P T + + I +E++ + T K Sbjct: 226 EAHGGN---RTDVSVFGQESNPTTWRLAHMNLAIHGIEANLGPQPA------DTFLKPQH 276 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 G + + L+NPPF + RF G P + + + ++ H + L Sbjct: 277 PGLQADFVLANPPFNVSDYSGQ-------LLRGDKRFSFGDPPVGNANYAWIQHFIHHLA 329 Query: 348 -LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GGG A V+++ L GE +IRR ++E DL++ IVA+P LFF T I Sbjct: 330 FPNGQGGGVAGFVMANGSL--SSNTGGEGDIRRKIVEADLVDCIVAMPAQLFFTTGIPVC 387 Query: 407 LWILSNRK------------TEERRGKVQLINATDLWTSIRNEGK-------------KR 441 LW L+ K E R+G+ I+A L + + Sbjct: 388 LWFLTRDKTGKNIRKGTPNRPEGRQGETLFIDARKLGSMQTRTLRVLSGLEEAEYVPGTS 447 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR----------IKVLRPLRMSFILD 491 + +I+ Y + + +G + + + + L Sbjct: 448 DPLPTSDIGRIVYAYRLWRGEPQPDWWNKKEYGEWTFMPTPGFASPATIEQIAKHGYALT 507 Query: 492 KTGLARL----EADITWRKLSPLHQSFWLDILKP 521 E D + + P + + L+ Sbjct: 508 PGRYVGAEVIEEDDEPFAEKYPRLVAEVEESLRE 541 >gi|162447450|ref|YP_001620582.1| type I site-specific restriction-modification system, M (modification) subunit [Acholeplasma laidlawii PG-8A] gi|161985557|gb|ABX81206.1| type I site-specific restriction-modification system, M (modification) subunit [Acholeplasma laidlawii PG-8A] Length = 495 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 96/524 (18%), Positives = 192/524 (36%), Gaps = 62/524 (11%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 + +W+ A+ L G+ + +++ VIL L+ + + ++ Y ++ + Sbjct: 9 EDKLWQMADKLRGNIESSEYKHVILGLVFLKYISDSFTERYEEIKANY-----PGMEEDR 63 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124 + F+ + + S +N I + + K + + Sbjct: 64 DAYESENVFFVPKDARWEYIKSQAKQSTIGQIIDNAMVQIEKENASLKGVLPKNYARPEL 123 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 + L ++ FS + V+ +YE+ +++F +F TP +V Sbjct: 124 DK----TRLGELIDLFSFNVGSKEARAKDVLGRVYEYFLKKF----GTTEGEFYTPPAIV 175 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 L ++ +YDP CG+GG + V + + +G Sbjct: 176 KLLVNMI-----------EPYNGRVYDPCCGSGGMFVQSAKFVEEHAGKIG---NISIYG 221 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QE T + + IR ++++ + G T + D R Y L+NPPF K Sbjct: 222 QEYVATTWRLAKMNLAIRGIDANLGE------RDGDTFTNDQHKTLRADYILANPPFNIK 275 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 + + R+ G P ++ + ++ H+ +KL G A VL++ Sbjct: 276 DWGQQHLIG-------DSRWQWGTPPATNANYAWISHMISKLSPR----GIAGFVLANGS 324 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 L S E EIR+ +LE L++ IVA+P+ LF+ +I LW +S K + KV Sbjct: 325 LSTS--RSEEYEIRKKILEEGLVDCIVAMPSQLFYDVSIPVSLWFVSKNKNGR-KDKVLF 381 Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRP 483 I+A + K R + D++ +I Y + + K + +D G+ + + Sbjct: 382 IDARKMGYMETR---KHRELTDEESEKIYSTYHAWRDDKDYQDID----GFCKSATLEEI 434 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 ++L +E L + ++ Sbjct: 435 RSHDYVLTPGRYVGIEEVEDDGIPFEEKMEKLTLELSELFEESK 478 >gi|237731957|ref|ZP_04562438.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907496|gb|EEH93414.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 507 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 108/540 (20%), Positives = 200/540 (37%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S ++ +W + G + IL L+ + + +E+Y Sbjct: 2 NNKISQDTINKALWSACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G +L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F++H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFILHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + I K KV LI+A+ + GK + ++ + ++I++ Y +N + + Sbjct: 390 AILIFKKHK---VDDKVLLIDASREY----KAGKNQNQLSAENIQKIVNTYREGDNVEKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + P + ++ + L +L + + + + Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAERDQLKAELAKLEMQMAGYLEE 502 >gi|85716964|ref|ZP_01047928.1| possible type I restriction-modification system methylation subunit [Nitrobacter sp. Nb-311A] gi|85696243|gb|EAQ34137.1| possible type I restriction-modification system methylation subunit [Nitrobacter sp. Nb-311A] Length = 499 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 103/467 (22%), Positives = 189/467 (40%), Gaps = 55/467 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +++W A L G +D+ + I P +RL + ++ Sbjct: 5 TQRELESYLWGAATLLRGLIDASDYKQYIFPLMFFKRLSDVWDEDYQQALDE-------T 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLES---YIASFSDN-AKAIFEDFDF 120 D + A F + + + + L S I + + + +F + ++ Sbjct: 58 GDEGYAINTANDRFVIPEGANWNDVRAAPRDVGRALLSAFLAIEAANPERLQGVFGNANW 117 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + A++ + L + ++FS +L VP+ + N YE+LI++F + A++F T Sbjct: 118 TDK-AQMPDS-TLKNLIEHFSKHDLTLAAVPEDELGNGYEYLIKKFADDSGHTAQEFYTN 175 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R +VHL +L P ++YDPTCGTGG L + V G + Sbjct: 176 RTLVHLMAQML----------EPQPGESIYDPTCGTGGMLISCLAEVKRRGGDIRTTG-- 223 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQEL T A+ ++I ++ +I G+TL+ F + F L Sbjct: 224 -LYGQELITITAAIARMNLVIHGVD-------DFHIASGNTLATPAFVQGDRLRTFDVVL 275 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K + GR G P F H+ + + GR Sbjct: 276 ANPPYSIK-----KWNRGAWEQDAWGRNFLGSPPQGRADYAFFQHILSSMHAKT---GRC 327 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF E+E+RR L+E+D +E ++ L LF+ + + + I ++K E Sbjct: 328 AILFPHGVLFRNE----EAEMRRRLVESDRVECVLGLGPGLFYNSPMEACVVICRSQKPE 383 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 R+G++ I+A R + + + + +IL Y + + Sbjct: 384 ARKGRILFIDAVAEIARERA----QSFLRPEHQARILSAYHAFADDP 426 >gi|323937174|gb|EGB33454.1| N-6 DNA methylase [Escherichia coli E1520] Length = 507 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 107/540 (19%), Positives = 200/540 (37%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S ++ +W + G + IL L+ + + +E+Y Sbjct: 2 NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G +L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F+ H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + I +K KV I+A+ + GK + ++++ ++I+ Y +N + + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIKKIVKTYRDGDNVEKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + P + ++ + L+ +L ++ + + Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEEEIDLLDVRAEREELKTELAKLETEMAGYLKE 502 >gi|111224380|ref|YP_715174.1| restriction enzyme subunit M (methylation) [Frankia alni ACN14a] gi|111151912|emb|CAJ63633.1| Restriction enzyme subunit M (methylation) [Frankia alni ACN14a] Length = 806 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 113/503 (22%), Positives = 188/503 (37%), Gaps = 65/503 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + L ++ A+ L G ++F + I L+R E V + + Sbjct: 1 MLGRKLTLPQLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEERVIAQLI 60 Query: 61 AFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYI----ASFSDN 110 A G S D E + Y E + L N + L + + Sbjct: 61 AEGRSRADAEQRATARARYRDTLYVPEEARWARLRDQVHHNVGDELNKALLALEECNNTA 120 Query: 111 AKAIFEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGS 168 + + + DF+ T+ + L + +F+ + L + + YE+LI F Sbjct: 121 LEGVVQHIDFTRTVGQSRIPDRKLRDLIAHFNTVRLRNEDFEFPDLLGAAYEYLIGEFAD 180 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +F TPR VV + AL+ P +YDP G+ G L A + VA Sbjct: 181 SAGKKGGEFYTPRAVVRMMVALV----------DPKPKMEIYDPCSGSAGMLILARDWVA 230 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 + G P L GQE ++ +L+ + +I+ G TL++ + Sbjct: 231 EHGGD---PRDLRLAGQEYNGGVWSISKMNLLLHGI-------PDADIRNGDTLAEPMHV 280 Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 +RF LSNPPF + ++ E R+G ++F+ H+ Sbjct: 281 SGGELERFDRVLSNPPFSLNYSREGMERENRF------RWGWAPEGGKKADLMFVQHMVA 334 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G AA V+ LF G E +IR LL +D+IEA++ L +LF+ T I Sbjct: 335 VLR----ANGVAATVMPHGVLFRGGT---ERDIRTALLNDDVIEAVIGLAPNLFYGTGIP 387 Query: 405 TYLWILSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + +L K ER GKV INA + G+ + + + +I+ Y + Sbjct: 388 ACVLVLRAPGAKPAERAGKVLFINADAEF----RAGRAQNYLMPEHVEKIVAAYREFTDI 443 Query: 463 KFSRMLDYRTFGYRRIKVLRPLR 485 GY ++ LR Sbjct: 444 P----------GYAKVVTRDELR 456 >gi|313896404|ref|ZP_07829955.1| putative type I restriction-modification system, M subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312974828|gb|EFR40292.1| putative type I restriction-modification system, M subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 806 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 101/481 (20%), Positives = 197/481 (40%), Gaps = 55/481 (11%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ L N ++ L G +F ++P +R+ + E+ S Sbjct: 313 TTSEQLFNHLFGACNILRGPINQDEFKSYVIPILFFKRISDVYDEEYQDALEE------S 366 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN----AKAIFEDFD 119 D E +SF + + N + + ++ +F FD Sbjct: 367 GGDEEYASAEDMHSFDIPEGCHWDDVRNVSENVGRAIVNAMSGIERANPLTLSGVFSSFD 426 Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + L + ++ S +++ +M + YE+LI++F + A +F Sbjct: 427 DGTWTNKNKLTDERLKDLVEHMSKVKVGNKNYTADIMGDSYEYLIKKFADMSKKNAGEFY 486 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR +V L LL P ++YDP CGTGG ++++H+ + + Sbjct: 487 TPRSIVKLMVRLL----------DPRPGESVYDPACGTGGMCIESIHHMKNSKLTYGK-- 534 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294 +GQE T A+ + + + I+QG TL K LF K F Sbjct: 535 ---IYGQENNLSTSAIARMNLYLHGAK-------DVQIRQGDTLRKPLFLEGGKLKTFDC 584 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG + + GR G P ++ +L H+ ++ G Sbjct: 585 VLANPPFGMS-----KWGADVFDSDQYGRNIWGCPTDANADFAWLQHMIKSMDKD---NG 636 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R A+VL LF+G E IR+ +++ DL+EAI+ L + +F+ T ++ + L+ +K Sbjct: 637 RCAVVLPQGVLFHGGK---EGSIRKEIIKADLLEAIITLASGVFYSTGVSACILFLTKKK 693 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTF 473 + +G++ LI+ ++++T +R + I++D+ + Y E+ + +++ Sbjct: 694 EHKHKGRICLIDGSEVYTPMRA----QNILSDENVDTLYQFYADYEDVMERCKVVTIADV 749 Query: 474 G 474 Sbjct: 750 E 750 >gi|254470667|ref|ZP_05084070.1| type I restriction-modification system, M subunit [Pseudovibrio sp. JE062] gi|211959809|gb|EEA95006.1| type I restriction-modification system, M subunit [Pseudovibrio sp. JE062] Length = 504 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 183/485 (37%), Gaps = 52/485 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ S + W + G + + +L L+ + + +++Y Sbjct: 1 MSVARVSQDQINKAAWGACDTFRGVVDPSIYKDYVLTMLFLKYISDVWQDHYDGFKQQYG 60 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE- 116 + E FV G SF + + L + + + +F+ Sbjct: 61 NEPELIAEMMKNEVFVLPEGASFGSLYDKRHQPGNGERIDVALTAIEEANGAKLRDVFQG 120 Query: 117 -DFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172 F+ ++ +K +L + ++F+ + L P V + V+ YE+LI RF + + Sbjct: 121 ISFNSNNLGDEQQKNDILRHVLEDFARDEMNLRPSRVGNLDVIGGAYEYLISRFAATAGK 180 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP +V L L+ P + DPTCG+G L ++ Sbjct: 181 KAGEFYTPAEVSELMAELVT----------PQEGDEICDPTCGSGSLLMKCGRQISARTG 230 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----- 287 GQE T A+ M + + + I+ G T+ Sbjct: 231 ----KKTYALFGQEAIGSTWALAKMNMFLHG-------ETNHQIEWGDTIRNPKLRTRED 279 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 ++F ++NPPF ++ + GRF GLP + G F+ H+ L+ Sbjct: 280 ALRKFDVVVANPPFSLD-----KWGIEQAEKDAFGRFSRGLPPKTKGDYAFISHMVETLK 334 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR A+V+ LF G S E +IR+ L+E +L++A++ LP LFF T I + Sbjct: 335 DDT---GRMAVVVPHGVLFRG---SSEGKIRKALIEENLLDAVIGLPEKLFFGTGIPAAI 388 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I K + V I+A+ + G + +N+ +I+ Y +R+ + Sbjct: 389 LIFKKGKGDNS---VLFIDASREYVE----GTNQNQLNETHIAKIVKTYTARQTAEKYAY 441 Query: 468 LDYRT 472 + Sbjct: 442 VAGLD 446 >gi|281358278|ref|ZP_06244761.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis vadensis ATCC BAA-548] gi|281315368|gb|EFA99398.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis vadensis ATCC BAA-548] Length = 500 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 203/550 (36%), Gaps = 64/550 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E T + IW A L G+ ++ +V+L L+ + + + + E+ Sbjct: 1 MSENTANIG-FEKEIWDAACILRGNMDAAEYKQVVLGLIFLKYISDKFDARYNELMEE-- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST----NTRNNLESY---IASFSDNAKA 113 + + + F+ +E + + + ++ I + K Sbjct: 58 ---DPDFAEDRDEYTSCNVFFVPAEARWAKIAEAAHTPDIGRTIDDAMILIEKENVRLKG 114 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I++ ++ YE+ + F + + Sbjct: 115 ILPKNFARPELDK----RRLGDVVDLFTNIKMKDHGDTRDILGRTYEYCLAMFAEQEGKK 170 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP VV L +YDP CG+GG + V + + Sbjct: 171 GGEFFTPACVVKTLVEFL-----------KPYNGRVYDPACGSGGMFVQSAKFVENHQGN 219 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQ+ P T + + IR +E++ + T D + Sbjct: 220 IN---NISVYGQDSNPTTWKMAQMNLAIRGIEANLGNYNA------DTFFNDCHPTLKAD 270 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + + R+ G+P + + +L H+ + L Sbjct: 271 FVMANPPFNLSDWGAD-------RLKDDVRWKYGVPPSGNANFAWLQHMIHHLAP----N 319 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+ +VL++ L GE EIR+ ++E+DL+ IVA+PT LF+ T I LW L Sbjct: 320 GKIGMVLANGSL--SSQSGGEGEIRKNIIEDDLVSCIVAMPTQLFYTTQIPVSLWFLCRN 377 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K +++GK I+A + T + K R++ D +++ + + ENG Sbjct: 378 K--KQKGKTCFIDARKMGTMVSR---KLRMLTDADIQELAKTFDAYENG-----TLEDVK 427 Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 G+ + + +IL +E + L + + + Sbjct: 428 GFCAVATTAQIAEQDYILTPGRYVGIEEQEDDGEPFDEKMERLTTELSTLFAKSH---DL 484 Query: 533 ESFVKESIKS 542 E+ +K+++K+ Sbjct: 485 ENEIKKNLKA 494 >gi|320449901|ref|YP_004201997.1| type I restriction-modification system subunit M [Thermus scotoductus SA-01] gi|320150070|gb|ADW21448.1| type I restriction-modification system, subunit M [Thermus scotoductus SA-01] Length = 522 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 118/556 (21%), Positives = 216/556 (38%), Gaps = 68/556 (12%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 +L ++W A + G F ILP L+RL E V + GG + L Sbjct: 5 TLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFE---DEVARRAQVLGGEKVVL 61 Query: 70 ESFVKVAG------YSFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDNAKAIFEDF 118 + + F+ + +T L + + + + + + Sbjct: 62 DLLEQERQRGQVTLVRFFIPENARWQAIRRQTTGLGQYLTDAVRAVARENPSLAGVIDMV 121 Query: 119 DFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 DF++T R+ L + S L + V ++ YE+L+R+F + A + Sbjct: 122 DFNATAAGQRIISDEHLKSLIDVLSRHRLGLEDVEPDILGRAYEYLLRKFAEGQGQSAGE 181 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TPR+V L LL P T+YDP CG+GG L + + + Sbjct: 182 FYTPREVAILMARLL----------EPEPGMTVYDPACGSGGLLIKCHLRLLERFGTMEN 231 Query: 237 PPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + GQE+ P T A+ +I LE+D I+ G T+ F Sbjct: 232 GHLRLPNQIKPLRLFGQEINPATFAMARMNAVIHDLEAD--------IRLGDTMRHPAFL 283 Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F ++NP + +K+ ++ ++N RF G P S ++ H+ Sbjct: 284 DAAGRLQTFDLVVANPMWNQKFGQEL------YENDPFERFRFGAPPSSSADWGWMQHML 337 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400 L GR A+VL + + G G E +IR+ +E DLIEA++ LP +LF+ Sbjct: 338 ASLNEK----GRMAVVLDTGAVSRGSGNQGANRERDIRKAFVEADLIEAVILLPENLFYN 393 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-R 459 T + +++ K + G++ LINA+ L+T G+ + + D+ ++I D+Y + R Sbjct: 394 TTAPGVILVINRAK--RKPGEILLINASKLFTK----GRPKNYLADEHIQRIADLYHTWR 447 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 S ++ + P R +K + E + + + ++ L Sbjct: 448 AEEGLSAIITKEEASRNDYNL-SPSRYVATGEKEDVLPPEEAMVLLREAEEERAAVDQEL 506 Query: 520 KPMMQQIYPYGWAESF 535 ++ + + + Sbjct: 507 AQVLHMLGLGDFRANN 522 >gi|52082597|ref|YP_081388.1| putative Type I restriction-modification system M subunit [Bacillus licheniformis ATCC 14580] gi|52787994|ref|YP_093823.1| hypothetical protein BLi04318 [Bacillus licheniformis ATCC 14580] gi|52005808|gb|AAU25750.1| putative Type I restriction-modification system M subunit [Bacillus licheniformis ATCC 14580] gi|52350496|gb|AAU43130.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 509 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 107/549 (19%), Positives = 203/549 (36%), Gaps = 68/549 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E + + + +W+ A+ G + + IL ++ L A + ++Y Sbjct: 1 MSEK-VTKDQINSVLWQAADTFRGKVDSSTYKDYILTMLFIKYLSDAYKEHLEEYTKRYN 59 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--------NAK 112 + ++ F + + L S + I + + Sbjct: 60 -----GDEQRIQRALSRERFVLDEQSTFDYLYSKRNDAEIGEIINKALERLENENTGKLR 114 Query: 113 AIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGS 168 +F + DF+S E+ +L + ++F+ + L P V + V+ + Y+++I RF S Sbjct: 115 GVFRNIDFNSEAILGKAKERNAMLRSLLEDFNKLTLKPSVVGSEDVIGDAYQYMIERFAS 174 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + +F TP L L+ P +YDPTCG+G L N V Sbjct: 175 DAGKKGGEFYTPSMASELLARLV----------KPQENDRVYDPTCGSGSLLIRVANQV- 223 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 + +GQE TH++ + M + ++ I+ G TL+ L Sbjct: 224 -------PNKKVAIYGQERNGATHSLALMNMYLHGID-------DAKIEWGDTLANPLHL 269 Query: 288 ---TGKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGPGLPKISDGSM 336 +F ++NPPF + E RF G+P S G Sbjct: 270 EDGKLMKFQAIVANPPFSLDKWAMGFAGEGTNDSKFKMEASLDPHRRFEWGVPPSSKGDY 329 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F+ H+ L GR A +L LF G E +IR+ ++E +L++A++ LP Sbjct: 330 AFVQHMLYSLAE----NGRMATILPHGVLFRGA---SEGKIRQQIIEMNLLDAVIGLPEG 382 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T I + + +T + V I+A+ + GK + + + +I+D Y Sbjct: 383 LFYGTGIPACILVFKKNRTRK---DVLFIDASAEGNYEK--GKNQNQLREQDIAKIVDTY 437 Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 RE K+S + + P + ++ + + Q Sbjct: 438 EKRETIDKYSYVATLDEIKENDYNLNIPRYVDTFEEEEPVDMHAVKENIANIKQELQEVE 497 Query: 516 LDILKPMMQ 524 ++ K + + Sbjct: 498 AEMEKYLKE 506 >gi|300837084|ref|YP_003754138.1| type I restriction-modification system M subunit [Klebsiella pneumoniae] gi|299474888|gb|ADJ18712.1| type I restriction-modification system M subunit [Klebsiella pneumoniae] Length = 507 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 106/540 (19%), Positives = 199/540 (36%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S ++ +W + G + IL L+ + + +++Y Sbjct: 2 NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKKQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G +L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGQDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F+ H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + I +K KV I+A+ + GK + ++++ ++I+ Y +N + + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIKKIVKTYRDGDNVEKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + P + ++ + L +L ++ + + Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAELAKLETEMAGYLKE 502 >gi|194436633|ref|ZP_03068734.1| type I restriction-modification system, M subunit [Escherichia coli 101-1] gi|194424665|gb|EDX40651.1| type I restriction-modification system, M subunit [Escherichia coli 101-1] Length = 528 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 107/540 (19%), Positives = 197/540 (36%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 + ++ +W + G + IL L+ + + + + +Y Sbjct: 2 NDKITQETINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDSYKAQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEALNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F+ H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + I +K KV I+A+ + GK + +++D R I+ Y + +N + + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEDNIRTIVKTYRNGDNVEKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + P + ++ + L +L + + + Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAELAKLETQMAGYLKE 502 >gi|121595901|ref|YP_987797.1| N-6 DNA methylase [Acidovorax sp. JS42] gi|120607981|gb|ABM43721.1| N-6 DNA methylase [Acidovorax sp. JS42] Length = 508 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 121/553 (21%), Positives = 219/553 (39%), Gaps = 64/553 (11%) Query: 1 MTEFTG--SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M+ + S L +++W A L G D+ + I P +R+ + A Sbjct: 1 MSHPSKRISQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALA- 59 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLES---YIASFSDNAKA 113 S DL + F + + N ++ I + + + Sbjct: 60 -----NSKGDLSYAQFAENHRFQIPQGAHWNDVRQAPKNVGAAIQKAMRAIETANPDLLD 114 Query: 114 -IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF D +++ RL L + ++FS L VP+ + N YE+LI++F + Sbjct: 115 GIFGDAPWTNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGH 172 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F T R VVHL T LL +P ++YDPTCGTGG L A++ V G Sbjct: 173 TAAEFYTNRTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGG 222 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 ++ +GQE T ++ + + +E I +G TL++ Sbjct: 223 EYRTLK---LYGQERNLITSSIARMNLFLHGVEDFE-------IIRGDTLAEPKHIEGDR 272 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F L+NPP+ K + + + GR G P F H+ L Sbjct: 273 LRQFDVILANPPYSIKQWN-----REAWSSDKWGRNSLGTPPQGRADYAFQQHILTSL-- 325 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR+A++ LF E +R ++E D +EA++ L +LF+ + + + + Sbjct: 326 --TAKGRSAVLWPHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIV 379 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467 I + +KT R+GKV I+A + T R + + + +++IL Y + + F+++ Sbjct: 380 ICNRKKTAARKGKVIFIDAVNEVTRERA----QSFLKPEHQQRILTAYKTFADVPGFAKV 435 Query: 468 LDYRTFGYRRIKVLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFW--LDILKP 521 G + PL + I + + W + ++FW +D L Sbjct: 436 ATLAEIGANAGNLSIPLYVKRIAAAIATDSNGDAVSLRSAWGQWQTDGRAFWQQMDALVE 495 Query: 522 MMQQIYPYGWAES 534 + + A++ Sbjct: 496 TLDGLVAQEAADA 508 >gi|258651342|ref|YP_003200498.1| Site-specific DNA-methyltransferase (adenine- specific) [Nakamurella multipartita DSM 44233] gi|258554567|gb|ACV77509.1| Site-specific DNA-methyltransferase (adenine- specific) [Nakamurella multipartita DSM 44233] Length = 548 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 94/484 (19%), Positives = 175/484 (36%), Gaps = 71/484 (14%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + L + +WK A+ L G + + VIL L+ + A + R +R + A G Sbjct: 22 ASTMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGI 81 Query: 65 SNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR----------------NNLESY 103 ++ F+ F+ + S L + Y Sbjct: 82 DEDQIDGFLDDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDY 141 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYEH 161 + + + +A + + L ++ F+ ++ +YE+ Sbjct: 142 LMDANPSLRATLPRIYNRDNVDQ----RRLGELLDLFNSARFTGQGATKARDLLGEVYEY 197 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + +F + +F TP L + +YDP CG+GG Sbjct: 198 FLEKFAKAEGKRGGEFYTPAS-----------VVRVLVEVLEPTRGRVYDPCCGSGGMFV 246 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + H+ + +GQEL T + + I L + + G T Sbjct: 247 QTEKFLEAH---HREGSEISVYGQELNERTWRMAKMNLAIHGLSGNLGP------RWGDT 297 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 ++D+ + Y L+NPPF ++ +N + R+ G+P + + ++ H Sbjct: 298 FARDIHPDVQADYVLANPPFN---------IKDWARNDKDPRWKFGVPPAGNANYAWIQH 348 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + +KL GG A +V+++ + GE IR L+E DL+ +VALPT LF T Sbjct: 349 IISKLAP----GGSAGVVMANGSMST--QSGGEGAIRAQLVEADLVSCMVALPTQLFRST 402 Query: 402 NIATYLWILSNRK------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 I LW + K + +R G+V I+A + + R ++DD I Sbjct: 403 GIPVCLWFFAKDKTVGTGGSVDRSGRVLFIDARSMGNMVDRAE---RSLSDDDIGLIAGT 459 Query: 456 YVSR 459 + + Sbjct: 460 FHAW 463 >gi|281420896|ref|ZP_06251895.1| ribosomal protein L11 [Prevotella copri DSM 18205] gi|281405188|gb|EFB35868.1| ribosomal protein L11 [Prevotella copri DSM 18205] Length = 502 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 106/538 (19%), Positives = 196/538 (36%), Gaps = 62/538 (11%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + + IWK A+ L G+ + + V+L L+ + E + Sbjct: 1 MAKKQDTISIGFEEKIWKAADILRGNLSASQYEGVVLGLIFLKYISDRFEQKFQEL---- 56 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--------TRNNLESYIASFSDNA 111 + A F+ +E S + + L + I ++ Sbjct: 57 -QGDEYADPEDKDEYTAENIFFVPAEARWSKISAAAHTPEIGVVIDEALTA-IERENERL 114 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + L + F+ IE+H ++ YE+ +++F S Sbjct: 115 KGILPKNFARPELDK----RRLGDVVDLFTNIEMHDAGEEKDLLGRTYEYCLQQFASLEG 170 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +V +L +YDP CG+GG + + Sbjct: 171 KNGGEFYTPSCIVRTLVEIL-----------EPYEGRVYDPCCGSGGMFVQSAKFIERHK 219 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + +GQE P+T + + IR L+++ T D + Sbjct: 220 GNLRK---ISIYGQEANPDTWKMAHMNLAIRGLDANLGN------VFADTFYDDQHPTLK 270 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF E R+ GLP + + ++ H+ + L Sbjct: 271 ADFILANPPFNLSDWGQSA-------LQEDVRWQYGLPPAGNANFAWMQHMIHHLAP--- 320 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+ +VL++ L GE +IR+ ++E DL+E IVALP+ LF+ T I LW +S Sbjct: 321 -NGKIGLVLANGAL--SSQSGGEGQIRQAIIEADLVEGIVALPSQLFYSTGIPVSLWFIS 377 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K + +GK I+A +L T + K R ++ D ++I D + + + G Sbjct: 378 RNKAQ--KGKTVFIDARNLGTMVTR--KLRELMPDTDIKKISDTFHAFQQG-----TLED 428 Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + + FIL + D + LK + ++ Sbjct: 429 EKGFCAVCTTEQIAAQDFILTPGRYVGIAEDEGDGVPFEEKMTNLTGELKQLFEESKK 486 >gi|118474825|ref|YP_892158.1| type I restriction-modification system, M subunit [Campylobacter fetus subsp. fetus 82-40] gi|118414051|gb|ABK82471.1| type I restriction-modification system, M subunit [Campylobacter fetus subsp. fetus 82-40] Length = 501 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 113/544 (20%), Positives = 207/544 (38%), Gaps = 79/544 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + ++ N IWK + G +++ IL ++ L + ++ +Y Sbjct: 6 TLEKTTKKTIENIIWKACDTFRGTMDGSNYKDYILTMLFVKYLSDFYKEKLELLKAEY-- 63 Query: 62 FGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA------- 113 LE K+ F + + +NL I + + Sbjct: 64 ----GDKLERIEAKLKKEKFRLDESCTFDYFIANKEASNLGEIINKALEKIEEDNRQKLN 119 Query: 114 -IFEDFDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRF 166 IF + DF+ST ++ +L + ++FS ++L P + + ++ ++YE+LI F Sbjct: 120 GIFRNIDFNSTAILGDTKQRNIILKNLIEDFSDDRLDLRPSMLENNDIIGDVYEYLIAHF 179 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 S + +F TP +V L L+ +P +YDPTCG+G L Sbjct: 180 ASNAGKKGGEFYTPSEVSTLLAKLV----------NPQEGDMIYDPTCGSGSLLIKVSKE 229 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + +GQE +THA+C M + + I+ G T+ L Sbjct: 230 IHSKN--------FRLYGQEKNGQTHALCKMNMFLHEINDAV-------IEWGDTIRNPL 274 Query: 287 F----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 K F ++NPPF ++ A GRF G+P S G F++H+ Sbjct: 275 HLQNNLLKTFDIVVANPPFSLDKWGEEIASGDSF-----GRFKFGIPPKSKGDYAFVLHM 329 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 + L G ++L LF G S E +IR+ L+E +L++AI+ LP +LF+ T Sbjct: 330 LSSLNSH----GTMGVILPHGVLFRG---SSEGKIRQKLIEQNLLDAIIGLPANLFYGTG 382 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 I + I +T V I+A+ + +N + +ND +I Y R + Sbjct: 383 IPACIMIFKKNRT---NNDVLFIDASSEFYKDKN----QNRLNDALIAKIAKTYNDRISV 435 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKP 521 L + + + + L+ + E + + + ++ Sbjct: 436 DKYAYLA---------TIEQIEQNDYNLNIPRYVDTYEEEKPIDIQATKDEIKRIENELN 486 Query: 522 MMQQ 525 ++Q Sbjct: 487 LVQN 490 >gi|260187773|ref|ZP_05765247.1| putative type I restriction/modification system DNA methylase [Mycobacterium tuberculosis CPHL_A] gi|289448412|ref|ZP_06438156.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis CPHL_A] gi|289421370|gb|EFD18571.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis CPHL_A] Length = 540 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 99/485 (20%), Positives = 181/485 (37%), Gaps = 66/485 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A + R A+R + A G Sbjct: 13 STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72 Query: 66 NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111 +E + F L N+ I D Sbjct: 73 ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132 Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164 + T+ RL L ++ F+ + +M +YE+ + Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + +F TP VV + +L +YDP CG+GG Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + P + +GQE ET + + I +++ + T ++ Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + Y ++NPPF ++ +N E R+ G+P ++ + ++ H+ Sbjct: 292 DQHPDVQMDYVMANPPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL GGRA +V+++ + +GE +IR ++E DL+ +VALPT LF T I Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396 Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW + K ++ G+V I+A +L + +R + +++ +I D + + Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA---KRALTNEEIVRIGDTFHA 453 Query: 459 RENGK 463 K Sbjct: 454 WRGSK 458 >gi|77920515|ref|YP_358330.1| type I restriction-modification system methyltransferase subunit [Pelobacter carbinolicus DSM 2380] gi|77546598|gb|ABA90160.1| type I restriction-modification system methyltransferase subunit [Pelobacter carbinolicus DSM 2380] Length = 708 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 109/467 (23%), Positives = 178/467 (38%), Gaps = 54/467 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + L +++W A L G D+ + I P +RL + E A S Sbjct: 3 SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 D E + F + ++ L + + D +F D + Sbjct: 57 GDQEYAALPEQHRFQIPEDAHWKATRTKVKNVGKVIQDALRAIETANPDTLYGVFGDAQW 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL +L ++ ++FS L P+ + YE LI++F + A +F T Sbjct: 117 TNK-DRLPDR-MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T +L P ++YDPTCG+ G L A+ H+ + L Sbjct: 175 RTVVHLMTEML----------EPRPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 GQE T A+ + + +E I +G TL+ F K+F L Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGIE-------DFRIVRGDTLANPAFVEGDRLKQFDVVL 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K GR G P F H+ ++ GR Sbjct: 275 ANPPYSIKQWD-----RDAWSADSWGRNLYGTPPQGRADYAFWQHIIKSMKAKS---GRC 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF E +R L+ +D++E ++ L +LF+ + + + I K + Sbjct: 327 AILFPHGVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 ERR KV INA + T R + + DD + I+ Y + + Sbjct: 383 ERRNKVLFINAVNEVTRERA----QSFLTDDHIQHIVAAYQTFGDED 425 >gi|308378090|ref|ZP_07668665.1| putative type I restriction-modification system, M subunit [Mycobacterium tuberculosis SUMu009] gi|308353571|gb|EFP42422.1| putative type I restriction-modification system, M subunit [Mycobacterium tuberculosis SUMu009] Length = 718 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 98/485 (20%), Positives = 179/485 (36%), Gaps = 66/485 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A + R A+R + A G Sbjct: 191 STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 250 Query: 66 NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111 +E + F L N+ I D Sbjct: 251 ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 310 Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164 + T+ RL L ++ F+ + +M +YE+ + Sbjct: 311 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 368 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + +F TP VV + +L +YDP CG+GG Sbjct: 369 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 417 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + P + +GQE ET + + I +++ + T ++ Sbjct: 418 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 469 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + Y ++N PF ++ +N E R+ G+P ++ + ++ H+ Sbjct: 470 DQHPDVQMDYVMANLPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 520 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL GGRA +V+++ + +GE +IR ++E DL+ +VALPT LF T I Sbjct: 521 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 574 Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW + K ++ G+V I+A +L + R + +++ +I D + + Sbjct: 575 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 631 Query: 459 RENGK 463 K Sbjct: 632 WRGSK 636 >gi|298504591|gb|ADI83314.1| type I restriction-modification system DNA adenine N6-methyltransferase [Geobacter sulfurreducens KN400] Length = 716 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 102/593 (17%), Positives = 207/593 (34%), Gaps = 66/593 (11%) Query: 3 EFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 + G+AA++ +W+ A+ L G ++ V L L+ + A E + + + Sbjct: 7 QANGTAANIGYEAELWQMADALRGSMDAAEYKHVALGLLFLKYISDAFEEKHAQLESERS 66 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKA 113 E A F+ E S L + + + I + K Sbjct: 67 QGADPEDPDEY---RALNIFWVPPEARWSHLKAQAKQPTIGQLVDDAMAGIERDNPALKG 123 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172 + + + L ++ S I + ++ V+ +YE+ + +F S + Sbjct: 124 VLPKEYARPALDK----QRLGQLIDLISNIRVGDAESRAKDVLGRVYEYFLSQFASAEGK 179 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-- 230 +F TPR VV L ++ +YDP CG+ G ++ + Sbjct: 180 KGGEFYTPRCVVRLLVEMI-----------EPYKGRVYDPCCGSSGMFVQSVEFIRAHAN 228 Query: 231 --GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G+ + +GQE T + + IR ++ I G T D F Sbjct: 229 GNGNSGNAKADISIYGQESNYTTWRLAKMNLAIRGIDG--------QIAHGDTFHNDRFP 280 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + + L+NPPF + + R+ G+P + + ++ H+ L Sbjct: 281 DLKADFILANPPFNISDWGGD-------RLRDDKRWQYGVPPTGNANFAWVQHMIYHLAP 333 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G + +S GE IR+ +++ +L++ IV LP LF+ T I +W Sbjct: 334 KGVAGFILGNISLTS------ETGGEDTIRKGIVDANLVDCIVTLPDRLFYSTPIPAGIW 387 Query: 409 ILSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 IL + + ++ I+A+ L ++ + R + DD +I Y + + K Sbjct: 388 ILRRGRDFDREVNKPNREILFIDASRLG---KSVTRTHRELTDDDLERIACTYRNWQ--K 442 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR---LEADITWRKLSPLHQSFWLDILK 520 S RR+++ + + L L A + +H +F + + Sbjct: 443 CSDAYLDVEGFCRRVELEEVIANGYNLLPAAYVNQGHLRATGGPQLHDVIHSNFRNETSQ 502 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573 + + E +K + +++ F+ + + A+ Sbjct: 503 SLDRVTDLNKAFEESLKMAEAELRILEQEIEFKSMFLGDILIRSDERLGNAEE 555 >gi|184200169|ref|YP_001854376.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201] gi|183580399|dbj|BAG28870.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201] Length = 521 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 108/542 (19%), Positives = 201/542 (37%), Gaps = 68/542 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T A +L +W A+ L G+ + +++ V+L L+ + E R ++ + A G Sbjct: 7 KTKPAKTLEQTLWDAADKLRGNQEPSEYKHVVLGLVFLKYVSDRFEERREQLKGELAAEG 66 Query: 64 GSNIDLESFVK-----VAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNA 111 +ESF++ + F+ S + ++ I + + Sbjct: 67 IKPERIESFLEDRDEYASQNVFWVPSLARWGYVQSVAKQPEIGQQIDQAMDLIEKENPSL 126 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFG-S 168 + + + + L ++ I D D V+ +YE+ + +F Sbjct: 127 RGVLPRNYGRDGLDK----RRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGK 182 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E + A F TPR VV +L +YDP G+GG + V Sbjct: 183 ETGKDAGAFYTPRSVVRTLVEML-----------EPYKGRVYDPAAGSGGMFVQSAEFVK 231 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G + +GQE T + + +R +E+D + + ++DL Sbjct: 232 AHG---GKRTDISVYGQEFTDTTWKLAKMNLALRGIEADMGTHSA------DSFTEDLHP 282 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 R + ++NPPF + K + R+ G P + + ++ H + L Sbjct: 283 DLRADFVIANPPFNVS-------DWWDAKLADDPRWKYGTPPKGNANFAWVQHFLHHLAP 335 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G A VL++ L SGE E R+ L+E L++ IVA+P LFF T I LW Sbjct: 336 Y----GTAGFVLANGSL--SSKSSGEGETRQRLVEAGLVDCIVAMPDKLFFNTGIPVSLW 389 Query: 409 ILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 +S + R+G+V I+A L K R++++D +I Y + + Sbjct: 390 FVSKGRDGNGHRARKGEVLFIDARKLGRMESR---KLRVLDNDDIGKIAGTYHAWRDHDG 446 Query: 465 SRMLDYRTFGYRR-IKVLRPLRMSFILDKTGL-----ARLEADITWRKLSPLHQSFWLDI 518 G+ + K+ + F+L A ++ + K+ L + + Sbjct: 447 GYQ---NETGFAKAAKIEEIEKHDFVLTPGRYVGAAEAEVDDEPIDEKIERLTTELFAEF 503 Query: 519 LK 520 + Sbjct: 504 ER 505 >gi|288817340|ref|YP_003431687.1| type I restriction-modification system methyltransferase subunit [Hydrogenobacter thermophilus TK-6] gi|288786739|dbj|BAI68486.1| type I restriction-modification system methyltransferase subunit [Hydrogenobacter thermophilus TK-6] gi|308750947|gb|ADO44430.1| type I restriction-modification system, M subunit [Hydrogenobacter thermophilus TK-6] Length = 813 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 103/489 (21%), Positives = 199/489 (40%), Gaps = 56/489 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + L ++K A+ L G +++ + I L+R+ + R + ++Y Sbjct: 1 MEKKKITLRELETHLFKAADILRGKMDASEYKEYIFGMLFLKRMSDVFDEEREKLFKEYK 60 Query: 61 AFGGSNIDLESFVKVAG---YSFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAK 112 G S+ +++ ++ +F+ + + + N L + + + + Sbjct: 61 NLGYSDEEIKEILEDPNIYSETFFVPEKARWEYILTLKEDVGNQLNKALAALEEANPELE 120 Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170 + + DF++ K L + +F+ L + + YE+L++ F Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLIHHFNKYRLRNEDFEFPDLLGAAYEYLLKEFADSA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ P +YDPT G+GGFL +A +V + Sbjct: 181 GKKGGEFYTPPSVKTLMVRLV----------KPKEGMRIYDPTVGSGGFLIEARQYVEEK 230 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 G + P L +GQE T ++C M++ + I+ TL+ F Sbjct: 231 GQN---PKNLALYGQENNGVTWSICKMNMILHGI-------PDAQIENEDTLTNPKFVEN 280 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLAN 344 K+F L+NPPF + + RF G ++FL H+ Sbjct: 281 GYIKQFDIVLANPPFSQNYT--------RANMHFPERFKYGFTPETGKKADLMFLQHMIA 332 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A V+ LF G E IR ++++DLI+AI+ LP LF+ T I Sbjct: 333 SLKPD----GIMATVMPHGVLFRGGQ---EKVIREGIVKDDLIQAIIGLPPKLFYNTGIP 385 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463 + +++ RK + + K+ INA + G+ + + + +I+ ++ + K Sbjct: 386 ACIIVINKRKPDHLKNKILFINADREYGE----GRNQNYLRPEDIEKIVTVFDNNLEIPK 441 Query: 464 FSRMLDYRT 472 +SR++D + Sbjct: 442 YSRLVDIKE 450 >gi|161503348|ref|YP_001570460.1| hypothetical protein SARI_01421 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864695|gb|ABX21318.1| hypothetical protein SARI_01421 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 507 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 107/540 (19%), Positives = 199/540 (36%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 + ++ +W + G + IL L+ + + +++Y Sbjct: 2 NDKITQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKKQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKNASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L + ++F+G L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRHLLEDFAGEALNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F++H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFILHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + I +K KV I+A+ + GK + +++D R I+ Y + +N + + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEDNIRTIVKTYRNGDNVEKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + P + ++ + L +L +++ + + Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEEEIDLLAVRAEREELKAELAKLEVEMTGYLKE 502 >gi|148544099|ref|YP_001271469.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016] gi|184153471|ref|YP_001841812.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM 1112] gi|227364523|ref|ZP_03848586.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus reuteri MM2-3] gi|325682361|ref|ZP_08161878.1| type I restriction-modification system DNA-methyltransferase [Lactobacillus reuteri MM4-1A] gi|148531133|gb|ABQ83132.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016] gi|183224815|dbj|BAG25332.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM 1112] gi|227070450|gb|EEI08810.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus reuteri MM2-3] gi|324978200|gb|EGC15150.1| type I restriction-modification system DNA-methyltransferase [Lactobacillus reuteri MM4-1A] Length = 510 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 120/553 (21%), Positives = 210/553 (37%), Gaps = 67/553 (12%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 ++ + +WK A+ L G +++ V+L L+ + E R + + Sbjct: 9 NIEDKLWKAADALRGSMDASEYRNVVLGLIFLKYASDSFEERRQELLKT----EYPEDAE 64 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122 + + + F+ E + + + I +D+ + I S Sbjct: 65 DPDMYLENNIFWVPQEARWAKIEHAAKTPQIGEVIDDAMTAIEKSNDSFRGILSKNYASP 124 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ S I++ D V+ +YE+ + F S+ + +F TPR Sbjct: 125 DLDK----TRLGEVVDLISDIKVGTKESTDKDVLGRVYEYFLNEFASQEGKHGGEFYTPR 180 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V + ++ +YDP CG+GG + V K L Sbjct: 181 SIVKILVEMI-----------EPYKGRIYDPCCGSGGMFVQSEEFVRHHQGELK---DLH 226 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 G+E P T + + IR ++SD QG T + DL G RF+Y L+NPPF Sbjct: 227 VFGEESNPTTWKLAKMNLAIRGIDSDLGPH------QGDTFTNDLHKGVRFNYILANPPF 280 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 K + K E R+ G+P + + ++ H+ +KL G+A VL+ Sbjct: 281 NIKNWGGE-------KLQEDARWKYGVPPTGNANYAWIEHIISKLAPD----GKAGFVLA 329 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE---- 417 + L E IR+ +LE+D I+AIVALP +F+ T I LW + K E Sbjct: 330 NGALSTSNKE--EFAIRKAILEDDKIDAIVALPEKMFYSTGIPVSLWFVDMNKESEDERS 387 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 R+G+ I+A +L I R NDD +++ D Y + D G+ + Sbjct: 388 RKGETLFIDARNLGEMIDRT---HRAFNDDDIKKVADTYHAYRGTNDQEYKDVA--GFCK 442 Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 I K+ + ++L L + + LK + ES Sbjct: 443 IAKLDEIAKNDYVLTPGRYVGLAKQEDDGESYEVKMKRLTSELKEQFE--------ESNK 494 Query: 537 KESIKSNEAKTLK 549 ++ + K L Sbjct: 495 LQAQIKDVLKELG 507 >gi|94263106|ref|ZP_01286924.1| N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93456477|gb|EAT06591.1| N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 517 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 88/483 (18%), Positives = 174/483 (36%), Gaps = 61/483 (12%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MTE T + A+L N +W A+ + G ++ V+L L+ + A + + + Sbjct: 1 MTEKTTNGANLGFENKLWIMADKMRGHMDAGEYKHVVLGLIFLKYISDAFQGKYDEL--E 58 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111 + A F+ E + + + + I + + Sbjct: 59 ATRDTEYTDPEDRDEYAAANIFWVPKEARWDKVQAEAPQPTIGKTIDEAMVALERENPSL 118 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170 + + + + L ++ K I+L + +YE+ + +F + Sbjct: 119 RGVLPKDYSRPALDK----TRLGELVKTVGDIDLQARQSGVQDPLGRVYEYFLGKFAAAE 174 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP+ VV L ++ ++DP CG+GG + V Sbjct: 175 GKSGGEFYTPQCVVQLLVEMI-----------EPYKGRVFDPCCGSGGMFVQSERFVEAR 223 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G + +GQE P T + + IR +++D DL Sbjct: 224 GGRLG---DIAVYGQESNPTTWKLAKMNLAIRGIDADLGPH------HADCFHNDLHKDL 274 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + Y L+NPPF + + R+ G P ++ + ++ H + L Sbjct: 275 KADYILANPPFNMSDWGGD-------RLRDDVRWKYGAPPANNANYAWIQHFIHHLAPDG 327 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G A + S + S E IR+ +++ D+I+ +VALP LF+ T I LW + Sbjct: 328 IAGFVMA---NGSM---STSTSSEGAIRQAMIDRDMIDCMVALPGQLFYTTQIPVCLWFV 381 Query: 411 SNRKTEERR-------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461 + K + + G+ I+A + I R ++ + I +Y + ++ Sbjct: 382 TRSKKADPKRGLRDRSGETLFIDARRMGNLIDRV---HRELSTADIKTITGVYHNWRNQD 438 Query: 462 GKF 464 G + Sbjct: 439 GDY 441 >gi|229541311|ref|ZP_04430371.1| type I restriction-modification system, M subunit [Bacillus coagulans 36D1] gi|229325731|gb|EEN91406.1| type I restriction-modification system, M subunit [Bacillus coagulans 36D1] Length = 509 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 105/547 (19%), Positives = 201/547 (36%), Gaps = 64/547 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E T + + + +W+ A+ G + + IL ++ L + + E Sbjct: 1 MVEQT-TQEKINSVLWQAADTFRGKIDSSTYKDYILTMLFIKYLSDTY---KEKLEEYTK 56 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAI 114 + G ++ + + TS + + LE S + + Sbjct: 57 RYNGDEQRIQRALSRERFVLDETSTFDYLYSKRNDPEIGEIINKALERIENENSGKLRGV 116 Query: 115 FEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEV 170 F + DF+S E+ +L + ++F+ + L P + + + N Y+++I F S+ Sbjct: 117 FRNIDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMIGLFASDA 176 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP +V L L+ P +YDPTCG+G L V Sbjct: 177 GKKGGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKVAKQV--- 223 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--- 287 + +GQE TH++ + M + ++ I+ G TL+ L Sbjct: 224 -----PSKKVAIYGQERNGATHSLALMNMYLHGID-------DAKIEWGDTLANPLHLED 271 Query: 288 -TGKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 +F ++NPPF + E RF G+P S G F Sbjct: 272 GKLMKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPSSKGDYAF 331 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H+ L GR A +L LF G E +IR+ ++E +L++A++ LP LF Sbjct: 332 VQHMLYSLAE----NGRMATILPHGVLFRGA---SEGKIRKQIIELNLLDAVIGLPEGLF 384 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T I + + +T + V I+A+ + GK + + + +I++ Y Sbjct: 385 YGTGIPACIMVFRKDRTRK---DVLFIDASGEEHYEK--GKNQNKLREQDIEKIVETYEK 439 Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 RE K+S + + P + ++ + + + Sbjct: 440 RETIDKYSYVATIDEIRENDYNLNIPRYVDTFEEEEPVDMEAVKENIANIKKELKEVEAQ 499 Query: 518 ILKPMMQ 524 + K + + Sbjct: 500 MEKYLKE 506 >gi|308270339|emb|CBX26951.1| hypothetical protein N47_A09800 [uncultured Desulfobacterium sp.] Length = 910 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 105/510 (20%), Positives = 196/510 (38%), Gaps = 78/510 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + L N + +DL G +++ + I L+R + ++ +R + Sbjct: 2 MVKTKLTLSRLENLLLTACDDLRGSMDASEYKEYIFGMLFLKRASDLFDQRQAELRTELA 61 Query: 61 AFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGST-----------------NTRNN 99 G S D+ + +G FY + + + N Sbjct: 62 GKGMSEEDITIALNDPDNYSGKYFYVPERARWNQAWDEEVIKDGEIKIIHHPALKHLKEN 121 Query: 100 LESYIASFSDNA--------KAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTV 150 + + + + + + + +F+ I R L +NF I L + Sbjct: 122 VGTMLNKALEAIEDANIDALQDVLKGINFNRKIGQRSLDDDTLADFIQNFEKIPLKDEDF 181 Query: 151 PDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + YE LI+ F + A +F TP +VV + + P ++ Sbjct: 182 EFPDLLGAAYEWLIKYFADSAGKKAGEFYTPVEVVRVCVEIC----------DPQEGMSI 231 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDPT G+GG L +++ +CG P L +GQE T ++C ML+ + Sbjct: 232 YDPTAGSGGMLIQTRDYLQECGGD---PGELSLNGQEKIGTTWSICKMNMLLHGI----- 283 Query: 270 RDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 +I+Q T+ + L + RF L+NPPF + + K + GRF Sbjct: 284 --SHADIRQADTIREPLHLDETNELKRFDRVLANPPFSQNYIK--------KELKFPGRF 333 Query: 325 GPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 +P+ ++F+ H+ + L+ GR A V+ LF G E RR+ +E Sbjct: 334 PVMMPEKGKKADLMFVQHMLSVLKHD----GRLATVMPHGVLFRGGE---ERAARRYFIE 386 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 +EAI+ LP++LF+ T I + +++ R V IN + EGK + Sbjct: 387 KGYLEAIIGLPSNLFYGTGIPACIMVMNKHGAAS-RDHVLFINGDREY----REGKAQNH 441 Query: 444 INDDQRRQILDIYVSREN-GKFSRMLDYRT 472 + + +I+ Y + + ++R + Sbjct: 442 LRPEDIDKIVHAYRNGLDIPDYARKVPVTE 471 >gi|309702143|emb|CBJ01458.1| putative type I methylase [Escherichia coli ETEC H10407] Length = 507 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 104/478 (21%), Positives = 181/478 (37%), Gaps = 56/478 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S ++ +W + G + IL L+ + + +E+Y Sbjct: 2 NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G +L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F+ H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I +K KV I+A+ + GK + ++++ +I+ Y +N + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIEKIVKTYRDGDNVE 440 >gi|260206067|ref|ZP_05773558.1| putative type I restriction/modification system DNA methylase [Mycobacterium tuberculosis K85] gi|289575453|ref|ZP_06455680.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis K85] gi|289539884|gb|EFD44462.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis K85] Length = 540 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 98/481 (20%), Positives = 179/481 (37%), Gaps = 66/481 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A + R A+R + A G Sbjct: 13 STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72 Query: 66 NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111 +E + F L N+ I D Sbjct: 73 ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132 Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164 + T+ RL L ++ F+ + +M +YE+ + Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + +F TP VV + +L +YDP CG+GG Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + P + +GQE ET + + I +++ + T ++ Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + Y ++NPPF ++ +N E R+ G+P ++ + ++ H+ Sbjct: 292 DQHPDVQMDYVMANPPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL GGRA +V+++ + +GE +IR ++E DL+ +VALPT LF T I Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396 Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW + K ++ G+V I+A +L + R + +++ +I D + + Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 453 Query: 459 R 459 Sbjct: 454 W 454 >gi|154249204|ref|YP_001410029.1| type I restriction-modification system, M subunit [Fervidobacterium nodosum Rt17-B1] gi|154153140|gb|ABS60372.1| type I restriction-modification system, M subunit [Fervidobacterium nodosum Rt17-B1] Length = 814 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 103/489 (21%), Positives = 197/489 (40%), Gaps = 56/489 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + L ++K A+ L G +++ + I L+ E R ++ ++ Sbjct: 1 MTGEKITLRQLEAHLFKAADKLRGKMDASEYKEYIFGMLFLKYASDVFEEKRRELKNEFR 60 Query: 61 AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDN---AK 112 G S + ++ G +F+ + + N L +++ + + Sbjct: 61 DMGYSEEQINELLEDPNSYGDTFFVPERARWENILKLKEDVGNQLNKALSALEEANTGLE 120 Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170 + + DF++ K L + +F+ +L P + YE+L++ F Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNNYKLIPSNFEFPDLLGAAYEYLLKEFADSA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ P ++YDPT G+GGFL +A ++V + Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 G + L +GQEL T ++C M++ + I+ L+ +F Sbjct: 231 GQN---SANLALYGQELNGLTWSICKMNMILHGIN-------DAQIENEDVLTNPMFLEN 280 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLAN 344 K+F L+NPPF + + RF G + ++FL H+ Sbjct: 281 GYIKKFDRILANPPFSENYS--------RANMQFTERFKYGFTPENGKKADLMFLQHMIA 332 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A V+ LF E IR ++ +DLIEAI+ LP LF+ T I Sbjct: 333 SLKD----NGVMATVMPHGVLFRSGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIP 385 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463 + +++ K E + K+ INA + G+ + + + +I+ ++ ++ K Sbjct: 386 ACIIVINKNKPENLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFEEKKEIPK 441 Query: 464 FSRMLDYRT 472 +S+++D + Sbjct: 442 YSKLVDIKE 450 >gi|302871461|ref|YP_003840097.1| type I restriction-modification system, M subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574320|gb|ADL42111.1| type I restriction-modification system, M subunit [Caldicellulosiruptor obsidiansis OB47] Length = 814 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 104/487 (21%), Positives = 201/487 (41%), Gaps = 52/487 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + L +++ A+ L G +++ + I L+ E R +R+++ Sbjct: 1 MASDKITLRQLETHLFRAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELRDRFQ 60 Query: 61 AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAK 112 S ++ ++ +F+ + + + N L +++ + Sbjct: 61 NMRFSEEQIQELLEDPVSYSDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELD 120 Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170 + + DF++ K L + +F+ +L P + YE+L++ F Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ P ++YDPT G+GGFL +A ++V + Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 G + P L +GQEL T ++C M++ + +I+ L+ +F+ Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIN-------DAHIENEDVLTTPMFSEN 280 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 KRF L+NPPF + + + E+ K G G ++FL H+ L Sbjct: 281 GYIKRFDRILANPPFSENYSRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G A V+ LF G E IR ++ +DLIEAI+ LP LF+ T I Sbjct: 335 KDD----GVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + +++ K E + K+ INA + G+ + + + +I+ ++ ++ K+S Sbjct: 388 IIVINKNKPEHLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFDEKKEIPKYS 443 Query: 466 RMLDYRT 472 ++D + Sbjct: 444 SLVDIKE 450 >gi|163798238|ref|ZP_02192170.1| type I restriction-modification system, M subunit [alpha proteobacterium BAL199] gi|159176486|gb|EDP61069.1| type I restriction-modification system, M subunit [alpha proteobacterium BAL199] Length = 505 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 187/489 (38%), Gaps = 58/489 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 MT + + W + G + IL L+ + R++Y Sbjct: 1 MT-DQLTQQQVNQTAWAACDTFRGVVDAGQYKDYILVMLFLKYISDHWNDHLETYRKQYG 59 Query: 60 --LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 A ++ E FV G SFY+ E LE + + +F + Sbjct: 60 GDEARIRRRLERERFVLPEGASFYDLYEARNEANIGERINIALERIEDTNRAKLEGVFRN 119 Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 DF+S ++ L + ++F+ ++L P V + ++ Y +LI RF S+ + Sbjct: 120 IDFNSEANLGRVKDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP V L L +P T+ DP CG+G L A V Sbjct: 180 KAGEFYTPSAVSRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEEVGSEN- 228 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 +GQE+ T A+ M + + I+ TL+ Sbjct: 229 -------FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDH 274 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +F ++NPPF ++A + K RF G+P S G F+ H+ Sbjct: 275 LMKFDVVVANPPFSLDKWGAENADTDQFK-----RFWRGIPPKSKGDYGFITHMIEIARR 329 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR A+++ LF G A E IR+ L+E +L++A+V LP +LF T I + Sbjct: 330 QS---GRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAIL 383 Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463 + + + E R V I+A+ +T GK + ++++ ++L+ Y SR + Sbjct: 384 VFDRSREQGGANEARRDVLFIDASKEFTP----GKTQNVMDEAHIGKVLETYASRAEIEK 439 Query: 464 FSRMLDYRT 472 +S Sbjct: 440 YSHRASPEE 448 >gi|15842294|ref|NP_337331.1| type I restriction system adenine methylase [Mycobacterium tuberculosis CDC1551] gi|31793930|ref|NP_856423.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium bovis AF2122/97] gi|121638634|ref|YP_978858.1| putative type I restriction/modification system DNA methylase hsdM [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215404725|ref|ZP_03416906.1| putative type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis 02_1987] gi|215412570|ref|ZP_03421298.1| putative type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis 94_M4241A] gi|215428188|ref|ZP_03426107.1| putative type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T92] gi|215431697|ref|ZP_03429616.1| putative type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis EAS054] gi|215447008|ref|ZP_03433760.1| putative type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T85] gi|219558766|ref|ZP_03537842.1| putative type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T17] gi|224991126|ref|YP_002645815.1| putative type I restriction/modification system DNA methylase [Mycobacterium bovis BCG str. Tokyo 172] gi|254232854|ref|ZP_04926181.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis C] gi|254365407|ref|ZP_04981452.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis str. Haarlem] gi|260201885|ref|ZP_05769376.1| putative type I restriction/modification system DNA methylase [Mycobacterium tuberculosis T46] gi|289444300|ref|ZP_06434044.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T46] gi|289570935|ref|ZP_06451162.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T17] gi|289746559|ref|ZP_06505937.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis 02_1987] gi|289751413|ref|ZP_06510791.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T92] gi|289754861|ref|ZP_06514239.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis EAS054] gi|289758883|ref|ZP_06518261.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis T85] gi|294994150|ref|ZP_06799841.1| putative type I restriction/modification system DNA methylase [Mycobacterium tuberculosis 210] gi|298526223|ref|ZP_07013632.1| type I restriction system adenine methylase [Mycobacterium tuberculosis 94_M4241A] gi|13882588|gb|AAK47145.1| type I restriction system adenine methylase [Mycobacterium tuberculosis CDC1551] gi|31619524|emb|CAD94962.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium bovis AF2122/97] gi|121494282|emb|CAL72760.1| Possible type I restriction/modification system dna methylase hsdM [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601913|gb|EAY60923.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis C] gi|134150920|gb|EBA42965.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis str. Haarlem] gi|224774241|dbj|BAH27047.1| putative type I restriction/modification system DNA methylase [Mycobacterium bovis BCG str. Tokyo 172] gi|289417219|gb|EFD14459.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T46] gi|289544689|gb|EFD48337.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T17] gi|289687087|gb|EFD54575.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis 02_1987] gi|289692000|gb|EFD59429.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis T92] gi|289695448|gb|EFD62877.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis EAS054] gi|289714447|gb|EFD78459.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis T85] gi|298496017|gb|EFI31311.1| type I restriction system adenine methylase [Mycobacterium tuberculosis 94_M4241A] gi|323718603|gb|EGB27767.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis CDC1551A] gi|326904371|gb|EGE51304.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis W-148] Length = 540 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 99/485 (20%), Positives = 180/485 (37%), Gaps = 66/485 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A + R A+R + A G Sbjct: 13 STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72 Query: 66 NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111 +E + F L N+ I D Sbjct: 73 ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132 Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164 + T+ RL L ++ F+ + +M +YE+ + Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + +F TP VV + +L +YDP CG+GG Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + P + +GQE ET + + I +++ + T ++ Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + Y ++NPPF ++ +N E R+ G+P ++ + ++ H+ Sbjct: 292 DQHPDVQMDYVMANPPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL GGRA +V+++ + +GE +IR ++E DL+ +VALPT LF T I Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396 Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW + K ++ G+V I+A +L + R + +++ +I D + + Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 453 Query: 459 RENGK 463 K Sbjct: 454 WRGSK 458 >gi|307353814|ref|YP_003894865.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanoplanus petrolearius DSM 11571] gi|307157047|gb|ADN36427.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanoplanus petrolearius DSM 11571] Length = 500 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 103/537 (19%), Positives = 192/537 (35%), Gaps = 62/537 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + IW A L G+ +++ V+L L+ + E +A+ Sbjct: 1 MAENNSANIGFEQEIWSAACVLRGNMDASEYKHVVLGLIFLKYISDKFEQKYNAL----- 55 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113 G + + +A FY E + ++ I + K Sbjct: 56 KEEGDGFEEDEDEYLAEGIFYVPPEARWDAIAKKAHTPEIGTTIDDAMRAIEKKNKRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L ++ F+ I++ ++ YE+ + +F + + Sbjct: 116 ILPKTFARPELDK----RRLGEVVDLFTNIQMADHGDSKDILGRAYEYCLAKFAEQEGKL 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP VV +L +YDP CG+GG + + + + Sbjct: 172 AGEFYTPACVVKTIVEVL-----------QPCQGRVYDPCCGSGGMFVQSAIFIENHRGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQ+ P T + + IR +E+D + + T DL + Sbjct: 221 IN---NISVYGQDSNPTTWKMAQMNLAIRGIEADLGKFSA------DTFYNDLHPTLKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF K + R+ G+P + + ++ H+ L Sbjct: 272 FIMANPPFNLSNWGAD-------KLADDPRWKYGIPPSGNANFAWMQHMIYHLAPK---- 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L GE EIR+ ++E DL+E IVA+P LF+ T I LW ++ Sbjct: 321 GRLGLVLANGSL--SSQSGGEGEIRKNIVEADLVECIVAMPPQLFYTTQIPVSLWFINRD 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467 K +++ K I+A + K R + ++ I E G FS + Sbjct: 379 K--KQKRKTLFIDARNKGEMRTR---KLRELTQEEIELIGKTVSQFEAGTLEEKKGFSAV 433 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + +L P R I D +L+ +++ K + Sbjct: 434 VSTEDIAKQDY-ILTPGRYVGIADVEDDGEPFEQK-MERLTGELSELFVESKKAEEE 488 >gi|227530269|ref|ZP_03960318.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus vaginalis ATCC 49540] gi|227349823|gb|EEJ40114.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus vaginalis ATCC 49540] Length = 512 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 116/563 (20%), Positives = 213/563 (37%), Gaps = 68/563 (12%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M T S S+ + +WK A+ L G +++ V+L L+ + + E + + + Sbjct: 1 MKMATKSKELSIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLK-- 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112 + + ++ F+ E + + + I S +D+ + Sbjct: 59 --SDYPEDAEDPDMYLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLR 116 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVS 171 + S + + L ++ S I L ++ +YE+ + F S+ Sbjct: 117 GVLSKNYASPDLDK----TRLGEVVDLISDISLGDKHAKQSDILGRVYEYFLNEFASQEG 172 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TPR +V ++ +YDP CG+GG + V + Sbjct: 173 KKGGEFYTPRSIVRTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSDKFVQEHQ 221 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 L +G+E P T + + IR ++++ QG T + DL G+R Sbjct: 222 GKIG---DLSVYGEESNPTTWKLAKMNLAIRGIDNNLGPH------QGDTFTNDLHKGER 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + L+NPPF K K E R+ G+P + + + ++ H+ +KL Sbjct: 273 FDFILANPPFNVKNWNGD-------KLREDARWKYGVPPVGNANYAWIEHIISKLAPD-- 323 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A VL++ L E IR+ LLE+D I+AIVA+P+ +F+ T I LW + Sbjct: 324 --GKAGFVLANGALSTSTKE--EYTIRKALLEDDKIDAIVAMPSQMFYSTGIPVSLWFID 379 Query: 412 NRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 K R+G+ I+A DL I R + D +++ D Y + Sbjct: 380 MNKESPDERNRKGETLFIDARDLGEMIDRT---HRAFSKDDIKKVADTYHAYRGTNKQEY 436 Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 D G+ +I K+ + ++L L + + LK + Sbjct: 437 KDVA--GFCKIAKLDEIAKNDYVLTPGRYVGLAKQADDGEPYEVKMKRLTGELKKQFE-- 492 Query: 527 YPYGWAESFVKESIKSNEAKTLK 549 ES ++ + K L Sbjct: 493 ------ESNKLQAEIKDVLKGLG 509 >gi|110799934|ref|YP_696989.1| type I restriction-modification system, M subunit [Clostridium perfringens ATCC 13124] gi|110674581|gb|ABG83568.1| type I restriction-modification system, M subunit [Clostridium perfringens ATCC 13124] Length = 505 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 207/471 (43%), Gaps = 52/471 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GS 65 + L + +W+ A+ L G+ ++ I L+RL + R R+++L G Sbjct: 5 TLQELESTLWQCADILRGELSAAEYKDYIFGMLFLKRLNDEFDEEREERRKEFLEDGLDK 64 Query: 66 NIDLESFVKVAGY-SFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAK-----AIFED 117 +E + Y +F+ + L + N L+ + D K + Sbjct: 65 EEVIELLEDPSIYETFFVPEQARWEKLRNLTLNIGPELDKAFKALEDEPKNSELVGVLST 124 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAED 176 +++ ++ L ++ FS + L + ++ + Y++LI++F + + + Sbjct: 125 TNYNDK-EKVPDKK-LAQLLVLFSTVNLANSNLASEDMLGDAYQYLIKQFADQGGKKGGE 182 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +VV + T +L P +YDPTCG+GG L ++ +V G + Sbjct: 183 FYTPTEVVKVITNIL----------KPQEGDRIYDPTCGSGGMLIQSIEYVKKHGGN--- 229 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 P L GQE+ T A+C ML + +IQ+G T+ + T K F Sbjct: 230 PKNLSLFGQEINLSTWAICKMNMLFHGAKG-------ADIQKGDTIREPKHTEGGALKVF 282 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPF K + E RF G+P S G + F+ H+ L + Sbjct: 283 DKVLANPPFSLKNWGAE-----EASYDAFHRFTYGIPPKSYGDLAFVEHMLGSLNMK--- 334 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ A V+ LF G S E +IR+ +E+DLIEA++ LP +LF+ T I + +L+ Sbjct: 335 -GKMASVVPHGVLFRG---SAEGKIRKGFIEDDLIEAVIGLPQNLFYGTGIPAAILVLNK 390 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 K+EER+ K+ I+ ++ + +G K + ++ +I+ + E+ + Sbjct: 391 AKSEERKNKILFIDGSNDFV---KQGNK-NKLREEDIEKIITAFDKFEDVE 437 >gi|59713718|ref|YP_206493.1| DNA methylase M [Vibrio fischeri ES114] gi|59481966|gb|AAW87605.1| DNA methylase M [Vibrio fischeri ES114] Length = 493 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 125/545 (22%), Positives = 214/545 (39%), Gaps = 71/545 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + L ++ K A L G +DF I P +R+ + E+ S+ Sbjct: 6 TLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEE------SD 59 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDF 120 D E + F + + T + L + + IF D + Sbjct: 60 GDEEYASMPEMHRFEIPTGCHWRDVRETTTSVGITIEDALRGIEQANQEYLYGIFGDAQW 119 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 S+ +L LL + ++FS L V ++ N YE+LI+ F ++ A +F TP Sbjct: 120 SNK-NKLSD-ELLINLVEHFSQYTLGNQNVEPDMLGNAYEYLIKHFADLTNKKAGEFYTP 177 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL +L P T+YDP CGTGG L + ++H+ D ++ Sbjct: 178 RSVVHLLGMIL----------DPHEGETIYDPACGTGGMLLECVDHLKDNKEDYRTLK-- 225 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 GQE + ++ M + +E I +G TL F K F + Sbjct: 226 -LFGQEKNLTSSSIARMNMFLHGIEDFE-------ILRGDTLRHPAFFEADGLKTFDCVI 277 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF K D + N GR G+P +G M ++ H+ L N GR Sbjct: 278 ANPPFSLK-----DWGSENWANDPYGRNIAGVPPKGNGDMAWVQHMVKSL----NSTGRM 328 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +VL LF A E +IR+ LL+ D++EA++ L ++F+ T +A + + K Sbjct: 329 TVVLPHGALFRKAA---EGKIRKQLLDQDMLEAVIGLGPNVFYGTQLAACVMVFKQNKPA 385 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 +++GKV I+A+D G+ + + + +QI D Y + ++ + Y Sbjct: 386 DKKGKVMFIDASDQI----RVGRAQNFLEPNHVQQIYDWYHNYQDVEN----------YV 431 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ + L L + K+ + + + + Q AE Sbjct: 432 KVASMDEL-------AENDYNLNIPLYVEKIIEDNLPSVEEAMADLKQAWQASLEAEEKF 484 Query: 537 KESIK 541 K +K Sbjct: 485 KSVLK 489 >gi|312973900|ref|ZP_07788071.1| type I restriction-modification system, M subunit [Escherichia coli 1827-70] gi|310331434|gb|EFP98690.1| type I restriction-modification system, M subunit [Escherichia coli 1827-70] Length = 507 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 104/478 (21%), Positives = 180/478 (37%), Gaps = 56/478 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S ++ +W + G + IL L+ + + +E+Y Sbjct: 2 NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G +L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F+ H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I +K KV I+A+ + GK + ++ + +I+ Y +N + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSAENIEKIVKTYRDGDNVE 440 >gi|120401062|ref|YP_950891.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1] gi|119953880|gb|ABM10885.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1] Length = 544 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 101/481 (20%), Positives = 182/481 (37%), Gaps = 66/481 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A + R A+R + A G Sbjct: 16 STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEADGLD 75 Query: 66 NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111 +E ++ F L N+ I D Sbjct: 76 AEQIEDLIEDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKNIGQLIDEAMDAV 135 Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164 + T+ RL L ++ F+ D +M +YE+ + Sbjct: 136 MK--ANPTLQGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGDGRARDLMGEVYEYFLG 193 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + +F TP VV + +L +YDP CG+GG Sbjct: 194 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSRGRVYDPCCGSGGMFVQTE 242 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + P + +GQE ET + + I +++ + G T ++ Sbjct: 243 KFIYEHDGD---PKEIAVYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWGDTFAR 294 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + Y L+NPPF ++ +N E R+ G+P ++ + ++ H+ Sbjct: 295 DQHPDVQMDYVLANPPFN---------IKDWARNEEDARWRFGVPPANNANYAWIQHILY 345 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL GG+A +V+++ + +GE +IR ++E DL+ ++ALPT LF T I Sbjct: 346 KLAS----GGKAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMIALPTQLFRSTGIP 399 Query: 405 TYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 +W + KT +R G+V I+A ++ + R ++DD +I D + + Sbjct: 400 VCVWFFAKDKTAGKQGSVDRSGQVLFIDAREMGYMVDRAE---RALSDDDIVKIGDTFHA 456 Query: 459 R 459 Sbjct: 457 W 457 >gi|83720663|ref|YP_443257.1| type I restriction system adenine methylase [Burkholderia thailandensis E264] gi|257139493|ref|ZP_05587755.1| type I restriction system adenine methylase [Burkholderia thailandensis E264] gi|83654488|gb|ABC38551.1| type I restriction system adenine methylase [Burkholderia thailandensis E264] Length = 518 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 109/478 (22%), Positives = 190/478 (39%), Gaps = 63/478 (13%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 ++K A+ L G+ + +D+ V L L+ + A E A+ + + E Sbjct: 18 EAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLAE--DVRAAEDKDEY 75 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTI 124 A F+ E S L + + + I +++ K + + Sbjct: 76 L---ADNVFWVPKEARWSHLQANAKLPAIGTLIDDAMRAIEKDNESLKGVLPKDYARPAL 132 Query: 125 ARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ +L ++ SGI L+ + ++ +YE+ + +F + +F TPR V Sbjct: 133 NKV----MLGELIDLISGIALNEEGDRSKDILGRVYEYFLGQFAGAEGKRGGEFYTPRSV 188 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V + +L +YDP CG+GG + V + G + + Sbjct: 189 VRVLVEML-----------EPYSGRVYDPCCGSGGMFVQSEKFVHEHGGRIG---DIAIY 234 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPF 301 GQE T + + +R ++SD I+ + + KD + Y L+NPPF Sbjct: 235 GQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLKADYVLANPPF 286 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + E R+ G P + + + +L H+ + L G A +VL+ Sbjct: 287 NISDWGGD-------RLREDVRWKFGAPPVGNANYAWLQHIFHHLAP----NGTAGVVLA 335 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----- 416 + + SGE EIRR ++E D ++ +VALP LF+ T I LW L+ K Sbjct: 336 NGSM--SSNQSGEGEIRRAMIEADAVDCMVALPGQLFYSTQIPACLWFLARNKNPGGGLR 393 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473 +RRG+V I+A L I RR +NDD ++I D Y + + D F Sbjct: 394 DRRGQVLFIDARKLGVLIDRT---RRELNDDDIKRIADSYHAWRGEKEAGEYADVLGF 448 >gi|323972572|gb|EGB67775.1| N-6 DNA methylase [Escherichia coli TA007] Length = 507 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 104/540 (19%), Positives = 200/540 (37%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 S ++ +W + G + IL L+ + + +++Y Sbjct: 2 NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDDYKKQYGDA 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + + E FV SFY E L + + K +F Sbjct: 62 PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L ++ ++F+G +L+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P T+ DP CG+G L + Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ K Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E +N + GRF G+P + G F+ H+ Sbjct: 281 NGNLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G GR +V+ LF G S E +IR+ +++ +L++A++ LP LF+ T I Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKMIDENLLDAVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + I +K KV I+A+ + GK + ++++ ++I+ Y +N + + Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIKKIVKTYRDGDNVEKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + P + ++ + + +L +++ + + Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLVAVRAEREQLKVELAKLEVEMAGYLKE 502 >gi|227539167|ref|ZP_03969216.1| site-specific DNA-methyltransferase (adenine-specific) [Sphingobacterium spiritivorum ATCC 33300] gi|227240849|gb|EEI90864.1| site-specific DNA-methyltransferase (adenine-specific) [Sphingobacterium spiritivorum ATCC 33300] Length = 513 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 106/558 (18%), Positives = 206/558 (36%), Gaps = 67/558 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + L +W+ A+ L + ++ V+L L+ + A + ++ G Sbjct: 1 MTNTLQ-LEKTLWQAADKLRNNMDAAEYKHVVLGLIFLKYISDAFDEHYEHLKSIEDQTG 59 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKAIFE 116 D + + A FY L +++ I + + K + Sbjct: 60 ADPEDKDEY--TADKIFYVPPSARWKWLQGRAKLPTIGKDIDDAMDAIEKDNPSLKGVLP 117 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + L ++ I L + V+ ++E+ + +F + Sbjct: 118 KDYARPALDK----QRLGELIDLIGSITLSKNGSGKGKDVLGFVFEYFLGQFADAEGKKG 173 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP+ +V+L +L +P + +YD CG+GG + + Sbjct: 174 GQFYTPQSIVNLLVEIL----------APEAEKRVYDGACGSGGMFVQSERFIEIHEHRK 223 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + GQE P T+ + + IR ++ I+ G TL D F + Y Sbjct: 224 GK---ISIFGQESNPTTYKLAKMNLAIRGID--------AKIELGDTLMNDKFPELKVDY 272 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF A E ++ G+P + + +L H +KL G Sbjct: 273 VIANPPFNVSDYNINKA--------ETHKWKYGIPPTGNANYAWLQHFVSKLAPY----G 320 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 A IVL++ + + A E +IR+ ++E DL++ +VALP+ LF+ T I LW L+ K Sbjct: 321 TAGIVLANGSMSSEIAT--EGQIRKEMIEADLVDCMVALPSQLFYNTQIPACLWFLARNK 378 Query: 415 T-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 R ++ I+A +L T I K+R + D ++ Y + + + Sbjct: 379 EGNSKLRNRNHEILFIDARELGTMISR---KQRELTDTDIARVAATYHNWRSPEKFATDY 435 Query: 470 YRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ + + + ++IL K + + +K + + Sbjct: 436 KDIPGFCKSANIQDVRKNNYILTPGRYIDF-------KAVEDDGVAFEEKMKTLTSTLAE 488 Query: 529 YGWAESFVKESIKSNEAK 546 + + + IK+N AK Sbjct: 489 QMHKANELDKLIKTNLAK 506 >gi|313896491|ref|ZP_07830042.1| putative type I restriction-modification system, M subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312974915|gb|EFR40379.1| putative type I restriction-modification system, M subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 501 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 101/497 (20%), Positives = 193/497 (38%), Gaps = 45/497 (9%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 E + + L +++W +A+ L G + + I P +RL E + ++ Sbjct: 2 ENKITLSELESYLWGSADILRGKMDAGSYKQYIFPLLFFKRLNDVYEEETAKAVKENGE- 60 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + D ++ ++ S +G + + S+ IF D +++ Sbjct: 61 EAAEWDEIHSYRIPDGFHWDDVRNVPSDVG-KAIVTAFRAMEKANSEKLTGIFGDGTWTN 119 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 RL LL + ++FS L + P+ + YE+LI++F + A++F T R Sbjct: 120 K-NRLPDR-LLKDLMEHFSKYTLSLENCPEDELGQGYEYLIKQFADDSGHTAQEFYTNRT 177 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VVHL T +L P ++YDPTCG+ G L A+ H+ G + + Sbjct: 178 VVHLMTEIL----------QPKSGESIYDPTCGSAGMLISAIAHLKRSGKEWR---NVSL 224 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSN 298 GQE+ + A+ + + +E I G TL+ F ++F ++N Sbjct: 225 FGQEINLLSSAIGRMNLFLHGIEDFE-------IVNGDTLANPAFTKNGKLRQFDMIVAN 277 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PP+ + + GR G+P + F H+ ++ GR AI Sbjct: 278 PPYSVNQWS-----RAAFEFDKYGRNILGVPPQARADYAFFQHILVSMKDKT---GRCAI 329 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 + LF E +R L+ +D ++ ++ L +LF+ + + + I K + Sbjct: 330 LFPHGVLFRNE----ERAMREKLVHSDWVDCVIGLGANLFYNSPMEACIVICRTEKPDTH 385 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRR 477 + V INA + T R + +I Y + + F++ + R Sbjct: 386 KNHVLFINALNEVTR----KNARSYLESQHIERISKAYNTYKSEEGFAKKVSIRDIEKND 441 Query: 478 IKVLRPLRMSFILDKTG 494 + PL + +++T Sbjct: 442 FSLNIPLYVQVTMEETK 458 >gi|302878446|ref|YP_003847010.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella capsiferriformans ES-2] gi|302581235|gb|ADL55246.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella capsiferriformans ES-2] Length = 516 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 111/542 (20%), Positives = 215/542 (39%), Gaps = 69/542 (12%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76 K A+ L G+ + +D+ V L L+ + A E A+ E+ + +A Sbjct: 21 KAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLEE-----DPQAAEDKDEYLA 75 Query: 77 GYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIARLEK 129 F+ + S L + + + I +++ K + + ++ Sbjct: 76 DNVFWVPKDARWSHLQANAKLPTIGTLIDDAMRAIEKDNESLKGVLPKDYARPALNKV-- 133 Query: 130 AGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +L ++ SGI L+ + ++ +YE+ + +F + +F TPR VV + Sbjct: 134 --MLGELIDLISGIALNEEGHASRDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVLV 191 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L +YDP CG+GG + V + G + +GQE Sbjct: 192 EML-----------EPYQGRIYDPCCGSGGMFVQSEKFVQEHGGRIG---DIAIYGQESN 237 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + +R ++SD I+ + + KD + Y L+NPPF Sbjct: 238 YVTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLKADYILANPPFNISDW 289 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + E R+ G P + + + +L H+ + L G A +VL++ + Sbjct: 290 GGD-------RLREDVRWKFGAPPVGNANYAWLQHIVHHLAP----NGTAGVVLANGSM- 337 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGK 421 SGE +IRR ++E D+++ +VALP LF+ T I LW L+ K +RRG+ Sbjct: 338 -SSTQSGEGDIRREMVEKDILDCMVALPGQLFYSTQIPACLWFLARNKNPGNGWRDRRGE 396 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 V I+A L + RR ++D ++I D Y + + + + G+ + L Sbjct: 397 VLFIDARKLGVLVDRT---RRELSDADVQKIADTYHAWRGEPNAGAYEDIS-GFCKSASL 452 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 +R + G A+ + + + L + Q+ + + ++++IK Sbjct: 453 DDIRKQGHVVAPGRYVGAAE------TDDDEEPTSEKLSRLSSQLRTHFSENAQLEQAIK 506 Query: 542 SN 543 + Sbjct: 507 NA 508 >gi|21232333|ref|NP_638250.1| type I restriction enzyme M protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767534|ref|YP_242296.1| type I restriction enzyme M protein [Xanthomonas campestris pv. campestris str. 8004] gi|188990647|ref|YP_001902657.1| type I site-specific DNA-methyltransferase catalytic subunit [Xanthomonas campestris pv. campestris str. B100] gi|21114104|gb|AAM42174.1| type I restriction enzyme M protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572866|gb|AAY48276.1| type I restriction enzyme M protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732407|emb|CAP50601.1| type I site-specific DNA-methyltransferase catalytic subunit [Xanthomonas campestris pv. campestris] Length = 502 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 99/484 (20%), Positives = 183/484 (37%), Gaps = 51/484 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + ++ +W + G + + +L L+ + + + K+ Sbjct: 1 MNKTDIAQDTINAAVWTACDTFRGTVDPSVYKDYVLTMLFLKYVSDVWQDHYDDYKTKHG 60 Query: 61 A---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + E FV +FY + L + + + +F+D Sbjct: 61 NKPGLIEELLKNERFVLPHRANFYTLYDQRHRPGNGERIDTALHAIEDANLGKLRDVFQD 120 Query: 118 --FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSE 172 F+ + +K LL + ++F+ L+ ++ N YE+LI+ F S + Sbjct: 121 ISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNFASSSGK 180 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP +V L L+ P + DPTCG+G L + + Sbjct: 181 KAGEFYTPPEVSALMARLM----------DPQQGDEICDPTCGSGSLLLKCGRLIRERTG 230 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 K +GQE T A+ M + + + I+ G T+ Sbjct: 231 SGK----YALYGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPKLLAGNH 279 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 K F ++NPPF + RF GLP + G F++H+ ++ Sbjct: 280 LKHFDIVVANPPFSL-----EKWGHDSADTDPHDRFRRGLPPRTKGDYAFILHMIATMKP 334 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR A+V+ LF G A E IR+ L+E +L++ ++ LP LF+ T I + Sbjct: 335 RT---GRMAVVVPHGVLFRGAA---EGRIRQKLIEENLLDVVIGLPEKLFYGTGIPAAVL 388 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 + +K ++ KV I+A+ + GK + ++ + ++ILD +R+N L Sbjct: 389 VFRTKKKDK---KVLFIDASRQYQD----GKNQNLLRESDLQRILDTVQARQNVDKYAYL 441 Query: 469 DYRT 472 Sbjct: 442 ASPD 445 >gi|154252793|ref|YP_001413617.1| type I restriction-modification system, M subunit [Parvibaculum lavamentivorans DS-1] gi|154156743|gb|ABS63960.1| type I restriction-modification system, M subunit [Parvibaculum lavamentivorans DS-1] Length = 505 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 106/489 (21%), Positives = 186/489 (38%), Gaps = 58/489 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + W + G + IL L+ + R+++ Sbjct: 1 MT-DQLTQQQVNQTAWAACDTFRGVVDAGQYKDYILVMLFLKYISDLWNDHVEVYRKQFG 59 Query: 61 AF---GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 ++ E F+ G SFY+ LE + + +F + Sbjct: 60 EDEARIRRRLERERFILPEGTSFYDLHAQRTEANIGELINIALEKIEDANRAKLEGVFRN 119 Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 DF+S ++ L + ++F+ ++L P V + ++ Y +LI RF S+ + Sbjct: 120 IDFNSEANLGRVKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP + L L +P T+ DP CG+G L A V Sbjct: 180 KAGEFYTPSAISRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEEVGSEN- 228 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288 +GQE+ T A+ M + + I+ TL+ Sbjct: 229 -------FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDH 274 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +F ++NPPF ++A + K RF G+P S G F+ H+ + Sbjct: 275 LMKFDVVVANPPFSLDKWGAENADTDQFK-----RFWRGIPPKSKGDYGFITHMIEIAKR 329 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR A+++ LF G A E IR+ L+E +L++A+V LP +LF T I + Sbjct: 330 QS---GRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAIL 383 Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-K 463 + + + E R V I+A+ +T GK + ++++ ++L+ Y SR K Sbjct: 384 VFDRSREQGGANEDRRDVLFIDASKEFTP----GKTQNVMDEAHIARVLEAYASRAETPK 439 Query: 464 FSRMLDYRT 472 +S Sbjct: 440 YSHRASPEE 448 >gi|25028883|ref|NP_738937.1| putative type I restriction-modification system methylase [Corynebacterium efficiens YS-314] gi|23494170|dbj|BAC19137.1| putative type I restriction-modification system methylase [Corynebacterium efficiens YS-314] Length = 536 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 103/564 (18%), Positives = 195/564 (34%), Gaps = 70/564 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A R+ + ++ +A G + Sbjct: 12 STMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMT 71 Query: 66 NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDF 118 + + F+ L N + + + + Sbjct: 72 DDQTAMLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAI 131 Query: 119 -----DFSSTIARL-----EKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRF 166 S+T+ R+ L ++ F+ ++ +YE+ + +F Sbjct: 132 MVANPALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARDLLGEVYEYFLEKF 191 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + +F TP L + +YDP CG+GG Sbjct: 192 ARAEGKRGGEFYTP-----------AGVVRVLVEVLEPTSGRVYDPCCGSGGMFVQTEKF 240 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + +GQEL T + + I L ++ + G T ++DL Sbjct: 241 LDAHNKDRTA---IAVYGQELNERTWRMAKMNLAIHGLNANLGP------RWGDTFARDL 291 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + Y ++NPPF ++ +N E R+ G+P ++ + ++ H+ +KL Sbjct: 292 HPEMQADYIMANPPFN---------IKDWARNEEDPRWRYGVPPKNNANYAWIQHIISKL 342 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G A + S N GE +IR L+E DL+ +VALPT LF T I Sbjct: 343 APGGSAGVVMA---NGSMSSNSG---GEGKIRAELVEADLVSCMVALPTQLFRSTGIPVC 396 Query: 407 LWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 +W + KT +R G+V I+A +L I R ++D+ +I D + + Sbjct: 397 VWFFAKDKTVGDQGAIDRTGQVLFIDARNLGHMIDRAE---RALSDEDIAKIADTFHTWR 453 Query: 461 NGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 ++ D F Y + + L Sbjct: 454 GTPSAKGRTYEDEAGFCYSA-TLEEIKDADYALTPGRYVGAAE---IEDDGEPIDEKIER 509 Query: 518 ILKPMMQQIYPYGWAESFVKESIK 541 + K ++ Q + V+E ++ Sbjct: 510 LKKELLDQFDESERLAAVVREQLR 533 >gi|257064463|ref|YP_003144135.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] gi|256792116|gb|ACV22786.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] Length = 503 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 95/509 (18%), Positives = 196/509 (38%), Gaps = 62/509 (12%) Query: 3 EFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 + + A + IW A+ L G+ +++ V+L L+ + E + ++ Sbjct: 4 KKADNTAEIGFEQQIWSAADKLRGNMDASEYKNVVLGLIFLKYISDKFEQRYQELVDE-- 61 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKA 113 G + + F+ E + +++ I + +D K Sbjct: 62 ---GEGFEEDRDEYTYKNIFFVPPEARWGVIAGAAHTPEIGKAIDNAMRLIEAENDKLKN 118 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I +F+ L+K L ++ F+ +++ ++ YE+ + +F + Sbjct: 119 ILPK-NFARQ--ELDKR-RLGEVVDLFTNVQMAEKGDTRDILGRTYEYCLSKFAEAEGKN 174 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP VV ++ +YDP CG+GG + V + Sbjct: 175 AGEFYTPACVVRTLVEII-----------EPYRGRVYDPCCGSGGMFVQSAQFVKNHQGR 223 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 L +GQE P T + + + IR +++D + T D+ +RF Sbjct: 224 I---DDLSVYGQESNPTTWKMAMMNLAIRGIDADLGTFNA------DTFFNDIHKNERFD 274 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + L+NPPF + + E R+ G P + + ++ H+ + L Sbjct: 275 FVLANPPFNMSDWGGE-------QLKEDPRWDFGTPPAGNANFAWMQHMIHHLADD---- 323 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +VL++ L + E IR+ +++ L+E IVA+P LF+ T I LWI+S Sbjct: 324 GRMGMVLANGSL--SSQTNNEGAIRQKIVDAGLVEGIVAMPDRLFYSTGIPVSLWIIS-- 379 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K R+ + ++A ++ T + + R D+ ++ + + + G+ Sbjct: 380 KESNRQRRTLFVDAREMGTMVSR---RLREFTDEDIAKVAETFDAFRKGEL-----EDEK 431 Query: 474 GYR-RIKVLRPLRMSFILDKTGLARLEAD 501 G+ + + + +IL ++ + Sbjct: 432 GFCAAVDIEDIAKQDYILTPGRYVGIKDE 460 >gi|259501399|ref|ZP_05744301.1| type I restriction-modification system [Lactobacillus iners DSM 13335] gi|259167148|gb|EEW51643.1| type I restriction-modification system [Lactobacillus iners DSM 13335] Length = 502 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 100/540 (18%), Positives = 203/540 (37%), Gaps = 60/540 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + +W A LWG ++ +VI+ LR + A + + + Sbjct: 1 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + F+ E T+ +N I + + K Sbjct: 59 ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L + F+ I++ + + ++ YE+ I +F + + Sbjct: 116 VLPKNYASPDLDK----QVLGDVVDIFTNRIDMSDNKQSEDLLGRTYEYCIAKFAEKEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YD CG+GG + + Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR +++D + T + DL + Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + K + R+ G P + + ++ H+ + L Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L + GE EIR+ ++E+DLIE I++LP LF+ +I LW +S Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISK 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +++GK I+A + + K R ++ +++ D + + +NG Sbjct: 380 NK--KQKGKTVFIDARKMGHMVDR---KHRDFTEEDIQKLADTFEAFQNG-----TLEDE 429 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + ++L +E + + L M ++ + Sbjct: 430 KGFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTKLTSELSDMFERSHELED 489 >gi|238855603|ref|ZP_04645904.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 269-3] gi|238831747|gb|EEQ24083.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 269-3] Length = 479 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 106/513 (20%), Positives = 199/513 (38%), Gaps = 61/513 (11%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + L + +W ++L G +++ V+L L+ + + E R + + Sbjct: 1 MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK---- 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 +S +A F+ + E + + + I +++ + I Sbjct: 57 SDYPEDAEDSDAYLADNIFWVSPEARWNNIQKAAKTPQIGEVIDHAMESIEKDNESLRGI 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + L+++ L + S I + + ++ +YE+ +++F S + Sbjct: 117 LSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKN 172 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VV ++ T+YDP CG+GG + V + Sbjct: 173 GGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQ 221 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 L +GQE P T + + IR ++++ + T + DL G F Sbjct: 222 I---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------DTFTNDLHKGTHFD 272 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF K + K + R+ G+P + + ++ H+ +KL Sbjct: 273 YILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKLNPD---- 321 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+A VL++ L E IR+ LLE D I+AIVALP +F+ T I LW + Sbjct: 322 GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDMN 379 Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 K +RRG+ I+A +L + R +++ ++I D Y + + D Sbjct: 380 KNSEDERDRRGETLFIDARELGEMVDRT---HREFSNEDIKKIADTYHAYRGTNKQKYED 436 Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD 501 G+ +I K+ + ++L L Sbjct: 437 VA--GFCKIAKLDEIAKNDYVLTPGRYVGLAEQ 467 >gi|229542810|ref|ZP_04431870.1| type I restriction-modification system, M subunit [Bacillus coagulans 36D1] gi|229327230|gb|EEN92905.1| type I restriction-modification system, M subunit [Bacillus coagulans 36D1] Length = 509 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 103/549 (18%), Positives = 200/549 (36%), Gaps = 68/549 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E T + + + +W+ A+ G + + IL ++ L + ++Y Sbjct: 1 MVEQT-TQEKINSVLWQAADTFRGKIDSSTYKDYILTMLFIKYLSDTYKEKLEEYTKRYN 59 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--------K 112 + ++ F + L S + I + + Sbjct: 60 -----GDEQRIQRALSRERFVLDETSTFDYLYSKRNDPEIGEIINKALERIENENAGKLR 114 Query: 113 AIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGS 168 +F + DF+S E+ +L + ++F+ + L P + + + N Y+++I F S Sbjct: 115 GVFRNIDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMIGLFAS 174 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + +F TP +V L L+ P +YDPTCG+G L V Sbjct: 175 DAGKKGGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKVAKQV- 223 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 + +GQE TH++ + M + ++ I+ G TL+ L Sbjct: 224 -------PSKKVAIYGQERNGATHSLALMNMYLHGID-------DAKIEWGDTLANPLHL 269 Query: 288 ---TGKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGPGLPKISDGSM 336 +F ++NPPF + E RF G+P S G Sbjct: 270 EDGKLMKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPSSKGDY 329 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F+ H+ L GR A +L LF G E++IR+ ++E +L++A++ LP Sbjct: 330 AFVQHMLYSLAE----NGRMATILPHGVLFRGA---SEAKIRKQIIELNLLDAVIGLPEG 382 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T I + + +T + V I+A+ + GK + + + +I++ Y Sbjct: 383 LFYGTGIPACIMVFRKDRTRK---DVLFIDASGEEHYEK--GKNQNKLREQDIEKIVETY 437 Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 RE K+S + + P + ++ + + + Sbjct: 438 EKRETIDKYSYVATIDEIRENDYNLNIPRYVDTFEEEEPVDMEAVKENIANIKKELKEVE 497 Query: 516 LDILKPMMQ 524 + K + + Sbjct: 498 AQMEKYLKE 506 >gi|91205221|ref|YP_537576.1| Type I restriction-modification system, M subunit [Rickettsia bellii RML369-C] gi|91068765|gb|ABE04487.1| Type I restriction-modification system, M subunit [Rickettsia bellii RML369-C] Length = 504 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 111/528 (21%), Positives = 198/528 (37%), Gaps = 59/528 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + N W + ++ IL + + + + E+ Sbjct: 1 MT-DQLKQNQINNAAWAACDTFRRVVDAANYKDYILVMLFFKYISDVWKAHKKECEERDK 59 Query: 61 AF---GGSNIDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAIFE 116 S ++ E FV G +FY+ L K +F Sbjct: 60 DEPSRIQSQLEREDFVIPKGANFYDIFVQREKSDSIGELINKALNEIEQKNLAKLKGVFR 119 Query: 117 DFDFSSTIA---RLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + DF+S E+ L + ++F ++L PD V + ++ Y +LI RF S+ Sbjct: 120 NVDFNSEFNLGKTKERNRRLKMLLEDFGKLELDLSPDRVNEDIIGECYIYLISRFASDAG 179 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP V L L +P + DP CG+G L A V D Sbjct: 180 KKAGEFYTPTAVSTLLAKL----------AAPKSGDIICDPACGSGSLLLRAAKEVGDNN 229 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----F 287 +GQE+ T A+ M + + +I G TL+ Sbjct: 230 --------YALYGQEMNNATWALAQMNMFLH-------SEGGAHIYWGDTLNHPEILEND 274 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 +F ++NPPF + ++A HK RF G+P + G F+ H+ + Sbjct: 275 KLMKFDIVIANPPFSLEKWGHENAANDNHK-----RFWRGIPPKTKGDYAFISHMIEVTK 329 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRAAIV+ LF G E IR+ L+E++L++A++ LP +LF T I + Sbjct: 330 PLS---GRAAIVVPHGVLFRGGT---EGLIRQSLIEDNLLDAVIGLPANLFTSTGIPVAI 383 Query: 408 WILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + +R V I+A+ + GK + + ++ +I+D Y +R+ + Sbjct: 384 LVFDRSRETGGQNNQRKDVLFIDASSSF----KAGKGQNFLEEEHINKIVDTYKNRKAIE 439 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +S + + + + P + ++ + E ++L Sbjct: 440 KYSHLANIHEIRENKHNLNIPRYVDTYEEEEEIDVAELQKEIQQLEKE 487 >gi|84387345|ref|ZP_00990365.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01] gi|84377794|gb|EAP94657.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01] Length = 505 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 104/485 (21%), Positives = 186/485 (38%), Gaps = 51/485 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + +W + G + + IL L+ + + + ++Y Sbjct: 1 MPHTPINQDDINKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKVDELAKEYG 60 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + ++ +SF G +F++ E + L + + K +F+D Sbjct: 61 DEPELIAAMMETQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQD 120 Query: 118 FDFS--STIARLEKAGLLYKICKNFSG--IELHPDTV-PDRVMSNIYEHLIRRFGSEVSE 172 F+ +K +L + ++F + L P V V+ N YE+LI+ F + + Sbjct: 121 ISFNTDKLGDEKQKNDILRHLLEDFGKETLNLRPSRVGTLDVIGNAYEYLIKHFAAGSGK 180 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP +V L + +L P T+ DP CG+G L V + + Sbjct: 181 SAGEFYTPPEVSDLLSIIL----------EPQQGDTICDPACGSGSLLMKCGKQVQNNFA 230 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290 K GQE T ++ M + + + I+ G T+ K Sbjct: 231 GSK---QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDKDG 280 Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F +NPPF +DA GRF G+P + G F+ H+ L+ Sbjct: 281 GLLHFDVVTANPPFSLDKWGFEDAGNDHF-----GRFRRGIPPKTKGDYAFISHMIETLK 335 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR +V+ LF S E +IR+ L++ +L++ ++ LP LFF T I + Sbjct: 336 PQT---GRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAI 389 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + +K + KV I+A+ + GK + + D ++I+D Y +RE Sbjct: 390 LLFKKQKDD---NKVLFIDASREF----KSGKNQNQLTPDNIQKIVDTYKARETTDKYSY 442 Query: 468 LDYRT 472 L Sbjct: 443 LASLE 447 >gi|38234849|ref|NP_940616.1| putative type I restriction/modification system DNA methylase [Corynebacterium diphtheriae NCTC 13129] gi|38201113|emb|CAE50837.1| Putative type I restriction/modification system DNA methylase [Corynebacterium diphtheriae] Length = 535 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 103/562 (18%), Positives = 203/562 (36%), Gaps = 70/562 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ + + +WK+A+ L G + + V L L+ + + E + +R + G Sbjct: 13 STSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELE---GK 69 Query: 66 NIDLESFVK--------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 D E ++ + F+ S L + +LE S + Sbjct: 70 GFDEEYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQ 129 Query: 118 F--DFSSTIARL--------EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRR 165 D S + L L ++ FS D ++ +YE+ + + Sbjct: 130 LMADNESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDK 189 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + +F TP+ VV +L +YDP CG+GG A Sbjct: 190 FAKAEGKRGGEFYTPQPVVRTLVEIL-----------EPTEGRVYDPCCGSGGMFVQAEK 238 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + + +GQEL T + + I + S + + G T ++D Sbjct: 239 FLE---VTKRDRSNIAVYGQELNERTWRMAKMNLAIHAISSSGLGE-----RWGDTFARD 290 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + G + Y ++NPPF ++ +N E R+ G+P + + ++ H+ +K Sbjct: 291 IHAGTKMDYIMANPPFN---------IKDWIRNEEDARWKYGVPPAKNANFAWIQHIISK 341 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G A + + SGE EIR+ ++E+D++ ++ALP LF T I Sbjct: 342 LKDHGEAGVVMA---NGTM---TSQSSGEGEIRKNMVEDDVVSCVIALPAQLFRGTGIPV 395 Query: 406 YLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 +W + K+ +RRG+V LI+A L I R +D+ +I + + + Sbjct: 396 CVWFFAKDKSAGVGGSVDRRGEVLLIDARQLGHMIDRTE---RAFSDEDITKIANAFRTW 452 Query: 460 ENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 K + G+ + + + L + + + Sbjct: 453 RGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVGMPEA---EEDDEPIDEKIARL 509 Query: 519 LKPMMQQIYPYGWAESFVKESI 540 + + ++ V+E + Sbjct: 510 TAELTAALDESARLDAVVREQL 531 >gi|227544655|ref|ZP_03974704.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus reuteri CF48-3A] gi|300909428|ref|ZP_07126889.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus reuteri SD2112] gi|227185380|gb|EEI65451.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus reuteri CF48-3A] gi|300893293|gb|EFK86652.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus reuteri SD2112] Length = 512 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 111/557 (19%), Positives = 216/557 (38%), Gaps = 63/557 (11%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M T S S+ + +WK A+ L G +++ V+L L+ + + E + + + Sbjct: 1 MKMATKSKELSIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLK-- 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112 + + ++ F+ E + + + I S +D+ + Sbjct: 59 --SDYPEDAEDPDMYLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLR 116 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVS 171 + S + + L ++ S I L ++ +YE+ + F S+ Sbjct: 117 GVLSKNYASPDLDK----ARLGEVVDLISDISLGDKHAKQSDILGRVYEYFLNEFASQEG 172 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TPR +V ++ +YDP CG+GG + V + Sbjct: 173 KKGGEFYTPRSIVRTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSDKFVQEHQ 221 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 L +G+E P T + + IR ++++ QG T + DL G+R Sbjct: 222 GKIG---DLSVYGEESNPTTWKLAKMNLAIRGIDNNLGPH------QGDTFTNDLHKGER 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + L+NPPF K K E R+ G+P + + + ++ H+ +KL Sbjct: 273 FDFILANPPFNVKNWNGD-------KLREDARWQYGVPPVGNANYAWIEHIISKLAPD-- 323 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A VL++ L + E +IR+ +LE+D I+AIVALP +F+ T I LW + Sbjct: 324 --GKAGFVLANGALSTS--TTAEHDIRKAILEDDKIDAIVALPDKMFYSTGIPVSLWFVD 379 Query: 412 NRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 K +R+G+ I+A DL I R + + +++ D Y + Sbjct: 380 MNKESENERDRKGETLFIDARDLGEMIDRT---HRAFSKEDIKKVADTYHAYRGTNDQEY 436 Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 D G+ ++ K+ + ++L L ++ + + +Q Sbjct: 437 KDVP--GFCKVAKLDEIAKNDYVLTPGRYVGLAKQ---EDDGEPYEVKMARLTGELKKQF 491 Query: 527 YPYGWAESFVKESIKSN 543 ++ +K+ +K Sbjct: 492 EESNKLQAEIKDVLKEL 508 >gi|320326658|gb|EFW82706.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. glycinea str. B076] Length = 574 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 92/498 (18%), Positives = 183/498 (36%), Gaps = 67/498 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + + L +W A+ L + ++ ++L L+ + + R+ ++ ++ Sbjct: 48 SSTSSTLQDLEKTLWATADKLRANMDAAEYKHIVLGLIFLKYISDSFAGRRAELKRRFAD 107 Query: 62 FGGS------------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------S 102 E F+ L + + ++ + Sbjct: 108 ASDDYYLGNDDSNLLAGELEERDYYKEVNVFWVPEAARWEALRAAAKQADIGKRIDEALA 167 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEH 161 I + + K I + + + G L ++ S I + ++ +YE+ Sbjct: 168 AIEAENQQLKNILDKRYARAQLPD----GKLGELVDMISIIGFGDNAHQARDLLGQVYEY 223 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + +F S + F TP +V A+L +YDP CG+GG Sbjct: 224 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPHQG-----------KVYDPCCGSGGMFV 272 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + G + +GQE P T + + IR ++ + ++ + + Sbjct: 273 QSEKFIEAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA------DS 323 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 ++ + R + L+NPPF + R+ G P + + +L H Sbjct: 324 FVRNQHSDLRADFVLANPPFNVS-------DWWHGSLEDDPRWVYGTPPPGNANYAWLQH 376 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L+ GRA IV+++ + + + E +IRR ++E D++E +VALP LFF T Sbjct: 377 MLFHLKST----GRAGIVMANGSMSSS--QNSEGDIRRAMIEADVVEVMVALPGQLFFNT 430 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460 I LW L+ +K + G+V I+A L RN + + + D +I + Sbjct: 431 QIPACLWFLAKQKNKRP-GEVLFIDARKLG---RNVSRVQIELRDSDIERIAQTVANWRG 486 Query: 461 -----NGKFSRMLDYRTF 473 G+ S D F Sbjct: 487 VPLDVGGEISEYADIPGF 504 >gi|251811429|ref|ZP_04825902.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis BCM-HMP0060] gi|251805058|gb|EES57715.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis BCM-HMP0060] Length = 504 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 107/539 (19%), Positives = 199/539 (36%), Gaps = 62/539 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G ++ V L L+ + + E + K ++ E Sbjct: 9 KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDSYADEEDQDEYL- 65 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIAR 126 A F+ E + + + I + +++ K + + + Sbjct: 66 --AENIFWVPKEARWQYINDNAKKPEIGQMIDKAMIAIENENESLKGVLPKEYARPALDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +YE+ I +F S + A +F TP +V L Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V H + +GQE Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +++D + T DL G + Y L+NPPF Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + ++ R+ G+P + + ++ H+ +KL G A VL++ + Sbjct: 280 GQEQLLD-------DYRWQFGIPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422 E EIR+ L+E DL+E IV LP LF+ T I LW +SN K +ERR ++ Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERRNEI 386 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481 I+A ++ + K +D+ +++ Y + D G+ ++ K+ Sbjct: 387 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHAWRGTNDKSYEDIA--GFCKVAKLE 441 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL L + + I + +Q E +++S+ Sbjct: 442 EVKNNEYILTPGRYVGLAD---VEEDKEPFEQKMERITSELSEQFAKSKELEDQIRKSL 497 >gi|302331823|gb|ADL22016.1| type I site-specific deoxyribonuclease methyltransferase subunit, HsdM [Staphylococcus aureus subsp. aureus JKD6159] Length = 504 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 108/539 (20%), Positives = 199/539 (36%), Gaps = 62/539 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G ++ V L L+ + + E + + E Sbjct: 9 KLWQAADKLRGSMDAAEYKNVALGIIFLKYVSDSFEEKYEELL--NDEYADEEDKDEYL- 65 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126 A F+ E + + + + I +++ K + + + Sbjct: 66 --AENIFWVPKESRWQYINDNSKKPEIGQIIDKAMIAIERENESLKGVLPKDYARPALDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +YE+ I +F S + A +F TP +V L Sbjct: 124 ----EKLGDIIDLFTFKVGDSESKKQDVLGRVYEYFIAKFASAEGKNAGEFYTPASIVKL 179 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V + +GQE Sbjct: 180 LVEMV-----------EPYEGRIYDPCCGSGGMFVQSERFVERH---QGRLDNIAVYGQE 225 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +++D T DL + + L+NPPF Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGDH------HADTFHNDLHKDLKADFILANPPFNASDW 279 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 K + R+ G+P + + ++ H+ +KL G A VL++ + Sbjct: 280 G-------REKLLDDYRWKFGIPPKGNANYAWIEHMISKLAPS----GTAGFVLANGSMS 328 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 E EIR+ L+E DL+E IV LP LF+ T I LW ++ K + ERRG+V Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFVTKNKAKNGKNERRGEV 386 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481 I+A ++ + + K ++DD+ + I ++Y S ++ D G+ ++ K Sbjct: 387 LFIDARNIGSMVSRTLK---EVSDDEIKDIANVYHSWRGTNNNQYEDKA--GFCKVAKTE 441 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL L + S + I + +Q E +++S+ Sbjct: 442 EIKNNEYILTPGRYVGLAE---VEEDSEPFEQKMERITADLSEQFAKSKELEDQIRKSL 497 >gi|302345836|ref|YP_003814189.1| putative type I restriction-modification system, M subunit [Prevotella melaninogenica ATCC 25845] gi|302149936|gb|ADK96198.1| putative type I restriction-modification system, M subunit [Prevotella melaninogenica ATCC 25845] Length = 501 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 102/539 (18%), Positives = 192/539 (35%), Gaps = 60/539 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + IWK A+ L G+ +++ V+L L+ + E + Sbjct: 1 MAKQNTADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDKFETKYQELVN--- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + +A F+ E S + +N I + K Sbjct: 58 --NGEGFEEDRDEYMADNIFFVPQEARWSVVAKAAHTPEIGTIIDNAMRLIEKENLRLKG 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I++ ++ YE+ + +F + Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEGKL 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP +V +L +YDP CG+GG + + + Sbjct: 172 AGEFYTPACIVQTLVEVL-----------KPYHGRVYDPACGSGGMFVQSAKFIERHQGN 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 K + +GQ+ P T + + IR +E+D + + T D + Sbjct: 221 IK---DISVYGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFDDQHPTLKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF K + R+ G+P + + +L H+ + L Sbjct: 272 FIMANPPFNLSDWGAD-------KLQDDVRWKFGIPPSGNANFAWLQHMIHHLSPK---- 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+ +VL++ L GE IR +++ DLIE IVALP+ LF+ T I LW L+ Sbjct: 321 GKIGMVLANGSL--SSQTGGEGTIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNRE 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K +++ K+ ++A ++ T + K R + + R+I D + K+S Sbjct: 379 K--KQKDKILFVDARNMGTMVTR---KLRELQEADIRKIADTF-----DKYSDGTLENEK 428 Query: 474 GYRRIKVL-RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + L + +IL + L + Q + Sbjct: 429 GFCAVVALGDVAKQDYILTPGRYVGIAEQEDDGIPFQEKMDKLTTELSDLFAQSHDLED 487 >gi|160902533|ref|YP_001568114.1| type I restriction-modification system, M subunit [Petrotoga mobilis SJ95] gi|160360177|gb|ABX31791.1| type I restriction-modification system, M subunit [Petrotoga mobilis SJ95] Length = 815 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 114/603 (18%), Positives = 228/603 (37%), Gaps = 62/603 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + L ++K A+ L G+ +++ + I L+R E ++ +R K+ Sbjct: 1 MNNGKITIRQLETHLFKAADILRGNMDASEYKEYIFGMLFLKRASDVFEVSKEKLRNKFK 60 Query: 61 AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAK 112 A ++ + ++ +F+ + + + N+L + + + Sbjct: 61 AQSFTDEQINELLEDPDLYWDTFFVPEKARWRNILTLKEDVGNHLNKALAALEEANRELD 120 Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170 + + DF++ K+ L + +F+ L + + YE+L++ F Sbjct: 121 GVLKYIDFNAIKGKTRLKSQQLIDLIHHFNKYRLTNEDFEFPDLLGAAYEYLLKEFADSA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ P T+YDPT G+GGFL ++ +++ + Sbjct: 181 GKKGGEFYTPTYVKKLMVRLV----------KPQEGMTIYDPTVGSGGFLIESRHYIEEQ 230 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 G P + +GQEL T ++C M++ + +I+ TL+ +F Sbjct: 231 GQD---PINIALYGQELNGLTWSICKMNMILHGI-------SDAHIENEDTLTTPMFVEN 280 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLAN 344 + F L+NPPF + + + ++ RF G ++FL H+ Sbjct: 281 GYIRHFDRVLANPPFSQNYTRTNMQFQE--------RFKYGFTPETGKKADLMFLQHMIA 332 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L N G A V+ LF G E IR ++ ++LIEAI+ LP+ LF+ I Sbjct: 333 SL----NDNGVMATVMPHGVLFRGGQ---EKVIREGIVRDNLIEAIIGLPSKLFYNVGIP 385 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463 + +++ K E + K+ INA + G+ + + + +I+ ++ +++ K Sbjct: 386 ACVIVINKNKPEHMKDKILFINADREYGE----GRNQNYLRPEDIEKIVTVFDEKKDIPK 441 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKT------GLARLEADITWRKLSPLHQSFWLD 517 +SR++D + + D L L QSF L Sbjct: 442 YSRIVDIMEIEDNDFNLNIRRYLDNSPDPEIEDVHAHLVCGVPKREVELYKELFQSFDLS 501 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577 + + + ++ Y ++E K E + D + Sbjct: 502 LNRLLKEKDKNYLEFNDNIEEKSKLREIIESDDNVRVTISKHREKLQEWWDKVTPEIERF 561 Query: 578 NGE 580 +G Sbjct: 562 HGN 564 >gi|254190415|ref|ZP_04896923.1| type I restriction-modification system methylation subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938091|gb|EDO93761.1| type I restriction-modification system methylation subunit [Burkholderia pseudomallei Pasteur 52237] Length = 543 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 187/467 (40%), Gaps = 55/467 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L N++W A L G D+ + I P +R+ + A SN Sbjct: 44 SQQELENYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALA------NSN 97 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDNAKA-IFEDFDF 120 DL + F + + + T N ++ I + + + IF D + Sbjct: 98 GDLSYAQFAENHRFQIPAGAHWNDVRQTPKNVGAAIQKAMRAIETANPDLLDGIFGDAPW 157 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL L + ++FS L VP+ + N YE+LI++F + A +F T Sbjct: 158 TNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 215 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T LL +P ++YDPTCGTGG L A++ V G ++ Sbjct: 216 RTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGGEYRTLK-- 263 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296 +GQE T ++ + + +E I +G TL+ ++F L Sbjct: 264 -LYGQERNLITSSIARMNLFLHGVEDFE-------IIRGDTLADPKHIEGDRLRQFDVIL 315 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K + + GR G P F H+ L GR Sbjct: 316 ANPPYSIKQWNREGWSSD-----KWGRNSLGTPPQGRADYAFQQHILTSL----TAKGRC 366 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A++ LF E +R ++E D +EA++ L +LF+ + + + + I + +KT Sbjct: 367 AVLWPHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKTA 422 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 RRGKV I+A R + + + ++ IL+ Y + Sbjct: 423 ARRGKVIFIDAVSEVARERA----QSFLKPEHQQHILNAYKMFADAP 465 >gi|256833459|ref|YP_003162186.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603] gi|256686990|gb|ACV09883.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603] Length = 521 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 107/544 (19%), Positives = 192/544 (35%), Gaps = 80/544 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 +L +W+ A+ L G+ + +++ V+L L+ + E R+ + + A G Sbjct: 10 TKTLEQTLWEAADKLRGNQEPSEYKHVVLGLVFLKYISDRFEERRATLEAELAAEGIKPE 69 Query: 68 DLESFVKVAG-----YSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNAKAIF 115 L F++ F+ + ++ I + + + Sbjct: 70 RLPDFLEDRDEYTSHNVFWVPELARWGYIQSVAKQPEIGQQIDQAMDLIEKENPTLRGVL 129 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFG-SEVSE 172 + + L ++ I D D V+ +YE+ + +F E + Sbjct: 130 PRNYGRDGLDK----RRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGKETGK 185 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A F TPR VV +L +YDP G+GG + V G Sbjct: 186 DAGAFYTPRSVVKTLVEML-----------EPYQGRVYDPAAGSGGMFVQSAEFVKAHG- 233 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + +GQE T + + +R +E+D + + + DL R Sbjct: 234 --GKRTDISVYGQEFTDTTWKLSKMNLALRGIEADMGP------RSADSFTDDLHPDLRA 285 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF + K R+ G P + + ++ H L Sbjct: 286 DFVIANPPFNVS-------DWWDAKLEGDPRWQYGTPPQGNANFAWVQHFIYHLSPK--- 335 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G A VL++ L GE E+RR L+E DL++ IVA+P LFF T I LW +S Sbjct: 336 -GTAGFVLANGSL--SSKSGGEGEMRRKLVEADLVDCIVAMPDKLFFNTGIPVALWFVSK 392 Query: 413 ----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 ERR +V I+A L T + R++ DD +I D Y + Sbjct: 393 ARHGNGHRERRSEVLFIDARKLGTMESR---RLRVLTDDDIAKIADTYHA---------W 440 Query: 469 DYRTFGYRRI-------KVLRPLRMSFILDKTGL-----ARLEADITWRKLSPLHQSFWL 516 GY + + + ++L A ++ + K+ L + + Sbjct: 441 RNHDGGYEDVPGFAKAASLEEIAKHDYVLTPGRYVGAAEAEVDDEPIDEKIERLTKELFA 500 Query: 517 DILK 520 + + Sbjct: 501 EFER 504 >gi|17232089|ref|NP_488637.1| type I restriction-modification system DNA methylase [Nostoc sp. PCC 7120] gi|17133734|dbj|BAB76296.1| type I restriction-modification system DNA methylase [Nostoc sp. PCC 7120] Length = 527 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 100/559 (17%), Positives = 197/559 (35%), Gaps = 61/559 (10%) Query: 1 MTEFTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE + +F +WK A+ L + ++ ++L L+ + A E + Sbjct: 1 MTEKAAKQNNSESFEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFEELHQKLLA 60 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA------ 111 + G+N + A F+ E S L + ++ + + Sbjct: 61 GEGDYAGAN-PEDRDEYSAENVFFVPVEARWSYLQGQAKQPDIGKTVDLAMEAIEQENAK 119 Query: 112 --KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168 K I + + L + I L V+ +YE+ + +F Sbjct: 120 RLKGILPKVYGQQKLDQ----KSLGGLIDLIGSITLGDAEAQAQDVLGRVYEYFLGQFAL 175 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + F TP +V L +L ++DP CG+GG + V Sbjct: 176 AEGKKGGQFYTPESIVKLLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFVK 224 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + +GQE T+ +C + IR ++ + + + D Sbjct: 225 NH---QGRLDDISIYGQESNETTYKLCRMNLAIRGIDGSNIKWNPEG-----SFLNDAHK 276 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + + ++NPPF + + +P + + + ++ H L Sbjct: 277 DLKADFVIANPPFNDSDWGGELLRNDGRWLDKD-----LVPPVGNANFAWVSHFIYHLAP 331 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G A VLS+ L SGE +IR+ L++ DL++ IV LPT LF+ T I LW Sbjct: 332 T----GSAGFVLSNGSL--SSNTSGEGDIRKALVQKDLVDCIVMLPTQLFYNTGIPACLW 385 Query: 409 ILSN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 LS K +R G+V I+A++L + R + + +I D Y + Sbjct: 386 FLSRYKNGNKNRDRHGEVLFIDASELGYMVNRSS---RAFTEAEISKIADTYHEWKKSGG 442 Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 S G+ + + + +F+L + ++ + + ++ + Sbjct: 443 SYR---DIKGFCKSASIAEIEKHNFVLTPGRYVGIPDEV---EDGVSFEEKMSELTMALG 496 Query: 524 QQIYPYGWAESFVKESIKS 542 +Q+ + +K+ + Sbjct: 497 EQMREGQLLDEEIKKQLLK 515 >gi|237756252|ref|ZP_04584812.1| type I restriction-modification system, M subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691589|gb|EEP60637.1| type I restriction-modification system, M subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 507 Score = 323 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 109/534 (20%), Positives = 215/534 (40%), Gaps = 52/534 (9%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 +L N++W+ A + G + + ILP L+RL + S + ++ + + + Sbjct: 7 TLENWLWEAASAIRGAVEANKYKDYILPLIFLKRLSDVFDDEISRLESEFGSRERALKIV 66 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIA---SFSDNAKAIFEDFDFSSTI 124 E + FY + + + L + + + + DF++++ Sbjct: 67 EM--DHSIVRFYIPEKARWKNIKAQSVRIGEYLTDAVREVAKENPKLEGVINIVDFNASV 124 Query: 125 --ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 R+ L ++ S L + V ++ YE+L+R+F + A +F TP++ Sbjct: 125 SGQRIIDDDRLKELINILSRHRLGLNDVEPDILGRAYEYLLRKFAEGSGQSAGEFYTPKE 184 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V L +L P +YDP CG+GG L + K L Sbjct: 185 VGILMAKIL----------DPKEGDEVYDPCCGSGGLLIKCYLRFKEKYQDKKDAIPLRF 234 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297 GQE+ T+A+ I +E+ I G ++ F K+F + Sbjct: 235 FGQEINHTTYAMAKMNAFIHDMENTE-------IALGDSMRNPAFKESDGSLKKFDVITA 287 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NP + + + ++ +KN RF G+P S ++ H+ L G+ A Sbjct: 288 NPMWNQNFSEEV------YKNDPYKRFEFGIPPSSSADWGWIQHMYASLRE----NGKIA 337 Query: 358 IVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +VL + + G G E +IR+ ++NDLIEA++ LP +LF+ T + +++ K Sbjct: 338 VVLDTGSVSRGSGNVGSNKERDIRKKFVDNDLIEAVILLPENLFYNTTAPGVIIVINKNK 397 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 E + ++ LINA+ L+ R + + D+ RQ+ +IY + E + S+++ Sbjct: 398 --EHKDQILLINASSLYEKER----PKNRLTDEGIRQVYEIYKNWEEREGLSKIVSKEEV 451 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + P R I + + L + + + + L+ ++ ++ Sbjct: 452 ARNDYNL-SPSRYVAINGEEEILDLNEAMVELLEAEEERREAEEKLRAVLSELG 504 >gi|297562021|ref|YP_003680995.1| Site-specific DNA-methyltransferase (adenine-specific) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846469|gb|ADH68489.1| Site-specific DNA-methyltransferase (adenine-specific) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 549 Score = 323 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 114/552 (20%), Positives = 205/552 (37%), Gaps = 70/552 (12%) Query: 5 TGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + + L + +WK A+ L G ++ +L L+ + A R + ++ G Sbjct: 11 TRTGSKDLKDTLWKAADKLRGSMDAAEYKHFVLGLIFLKYVSDAFAERRVHIEKELREEG 70 Query: 64 GSNIDL--ESFVKVAGY----SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 G + E+ Y F+ + E + D+A + Sbjct: 71 GYSETDIAETLEDREEYIGYGVFWVPQAARWEAIAERAKTGAGEDGVGKLLDDAMKAVAN 130 Query: 118 FD--FSSTIA------RLEKAGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHL 162 + +++ R L ++ + I PD V+ +YE+ Sbjct: 131 TNPSLRNSLPQGLFNARGVDERRLGELVDLINRIGFGDQLDPDGNRRSARDVLGEVYEYC 190 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + +F ++ TP VV L A+L P +YDP CG+GG Sbjct: 191 LGKFALAEGRRGGEYYTPACVVELIVAML----------EPQKGERVYDPACGSGGMFVQ 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A V G + + + +GQEL T + + I + +D + T Sbjct: 241 AEKFVESHGGNAR---DIAVYGQELNQNTWRLAKMNLAIHGISADLGT------KWDDTF 291 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 D R H ++NPPF + R+ G+P + + + +L H+ Sbjct: 292 HNDHHPDLRAHVVMANPPFNISDWGGD-------RLVMDPRWQWGVPPVGNANYAWLQHM 344 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 A KL GRA IVL++ + SGE +IRR ++E+ L+ +VALP LF T Sbjct: 345 AYKLAPKA---GRAGIVLANGSM--SSKQSGEGDIRRAMVEDGLVACMVALPGQLFRSTQ 399 Query: 403 IATYLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 I +WIL+ + +R G+V I+A +L + K+ + +D+ +QI + Sbjct: 400 IPACVWILAKDRGAKGGRGSIDRTGQVLFIDARELGEMVTRTEKQ---LTEDEIKQISNT 456 Query: 456 YVSRENGKFSRM--LDYRTF-GYRR-IKVLRPLRMSFILDKTGL---ARLEADITWRKLS 508 + + ++ L Y G+ + + + FIL A +E D L Sbjct: 457 FHAWLGTSSAKRNGLTYEDIGGFCKSVSLDEIREHDFILTPGRYVGAAEVEEDPDAEPLD 516 Query: 509 PLHQSFWLDILK 520 ++ + Sbjct: 517 EKVARLQKELFE 528 >gi|148976278|ref|ZP_01813002.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3] gi|145964372|gb|EDK29627.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3] Length = 515 Score = 323 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 112/552 (20%), Positives = 203/552 (36%), Gaps = 60/552 (10%) Query: 1 MTEFTGSAASLAN-----FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + L +W + G + + IL L+ + + + Sbjct: 1 MPHTKINQDPLYQEQVNKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKFDEL 60 Query: 56 REKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 +++ + + +SF G +F++ E + L + + K Sbjct: 61 SKQFNGNEQMITAMMSKQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLK 120 Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNF--SGIELHPDTV-PDRVMSNIYEHLIRRFG 167 +F+D F+ +K +L + ++F + L P V V+ N YE+LI+ F Sbjct: 121 NVFQDISFNTDKLGDEKQKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFA 180 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + A +F TP +V L + +L P ++ DP CG+G L V Sbjct: 181 AGSGKSAGEFYTPPEVSDLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQV 230 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + K GQE T ++ M + + + I+ G T+ Sbjct: 231 QKNFAGSK---QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKL 280 Query: 288 TGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 K F +NPPF +DA GRF G+P G F+ H+ Sbjct: 281 QDKEGGLLHFDVVTANPPFSLDKWGFEDAGNDHF-----GRFRRGIPPKIKGDYAFISHM 335 Query: 343 ANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L+ G GGR +V+ LF S E +IR+ L++ +L++ ++ LP LFF Sbjct: 336 IETLKPASQGKKGGRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T I + I +K + KV I+A+ + GK + + + ++I+D Y +RE Sbjct: 393 TGIPAAILIFKKQKDD---NKVLFIDASREF----KSGKNQNQLTPENIQKIVDTYKARE 445 Query: 461 NGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 +S + + P + ++ + T R Q+ D+ Sbjct: 446 TTDKYSYLASLEEVAENDYNLNIPRYVDTFEEEEEIDLA----TVRNERLALQNKLADLE 501 Query: 520 KPMMQQIYPYGW 531 M + G+ Sbjct: 502 GEMAGYLEELGY 513 >gi|260665337|ref|ZP_05866185.1| type I restriction-modification system, M subunit [Lactobacillus jensenii SJ-7A-US] gi|260560841|gb|EEX26817.1| type I restriction-modification system, M subunit [Lactobacillus jensenii SJ-7A-US] Length = 510 Score = 323 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 109/555 (19%), Positives = 211/555 (38%), Gaps = 64/555 (11%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + L + +W ++L G +++ V+L L+ + + E R + + Sbjct: 1 MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK---- 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 +S +A F+ + E + + + I +++ + I Sbjct: 57 SDYPEDAEDSDAYLADNIFWVSPEARWNNIQKAAKTPQIGEVIDHAMESIEKDNESLRGI 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + L+++ L + S I + + ++ +YE+ +++F S + Sbjct: 117 LSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKN 172 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VV ++ T+YDP CG+GG + V + Sbjct: 173 GGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQ 221 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 L +GQE P T + + IR ++++ + T + DL G F Sbjct: 222 I---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------DTFTNDLHKGTHFD 272 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF K + K + R+ G+P + + ++ H+ +KL Sbjct: 273 YILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKLNPD---- 321 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+A VL++ L E IR+ LLE D I+AIVALP +F+ T I LW + Sbjct: 322 GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDMN 379 Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 K +RRG+ I+A +L + R +++ ++I D Y + + D Sbjct: 380 KNSEDERDRRGETLFIDARELGEMVDRT---HREFSNEDIKKIADTYHAYRGTNKQKYED 436 Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ +I K+ + ++L L ++ + + +Q Sbjct: 437 VA--GFCKIAKLDEIAKNDYVLTPGRYVGLAEQ---EDDGEPYEVKMARLTGELKKQFEE 491 Query: 529 YGWAESFVKESIKSN 543 + +K+ +K Sbjct: 492 SDRLQDEIKDVLKEL 506 >gi|15609893|ref|NP_217272.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis H37Rv] gi|148662598|ref|YP_001284121.1| putative type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis H37Ra] gi|148823944|ref|YP_001288698.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis F11] gi|167968583|ref|ZP_02550860.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis H37Ra] gi|218754497|ref|ZP_03533293.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis GM 1503] gi|253798162|ref|YP_003031163.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN 1435] gi|254551815|ref|ZP_05142262.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553459|ref|ZP_06442669.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN 605] gi|289762928|ref|ZP_06522306.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis GM 1503] gi|297635365|ref|ZP_06953145.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN 4207] gi|297732363|ref|ZP_06961481.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN R506] gi|306777037|ref|ZP_07415374.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu001] gi|306780940|ref|ZP_07419277.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu002] gi|306785567|ref|ZP_07423889.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu003] gi|306790162|ref|ZP_07428484.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu004] gi|306794246|ref|ZP_07432548.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu005] gi|306798664|ref|ZP_07436966.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu006] gi|306804519|ref|ZP_07441187.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu008] gi|306807440|ref|ZP_07444108.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu007] gi|306973152|ref|ZP_07485813.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu010] gi|307080861|ref|ZP_07490031.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu011] gi|307085452|ref|ZP_07494565.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu012] gi|313659695|ref|ZP_07816575.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN V2475] gi|2624278|emb|CAA15552.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|148506750|gb|ABQ74559.1| putative type I restriction/modification system DNA methylase HsdM [Mycobacterium tuberculosis H37Ra] gi|148722471|gb|ABR07096.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis F11] gi|253319665|gb|ACT24268.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN 1435] gi|289438091|gb|EFD20584.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN 605] gi|289710434|gb|EFD74450.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis GM 1503] gi|308214548|gb|EFO73947.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu001] gi|308326196|gb|EFP15047.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu002] gi|308329750|gb|EFP18601.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu003] gi|308333357|gb|EFP22208.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu004] gi|308337381|gb|EFP26232.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu005] gi|308341044|gb|EFP29895.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu006] gi|308346170|gb|EFP35021.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu007] gi|308348850|gb|EFP37701.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu008] gi|308357414|gb|EFP46265.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu010] gi|308361366|gb|EFP50217.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu011] gi|308364976|gb|EFP53827.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis SUMu012] gi|328457935|gb|AEB03358.1| type I restriction/modification system DNA methylase hsdM [Mycobacterium tuberculosis KZN 4207] Length = 540 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 98/485 (20%), Positives = 179/485 (36%), Gaps = 66/485 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A + R A+R + A G Sbjct: 13 STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72 Query: 66 NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111 +E + F L N+ I D Sbjct: 73 ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132 Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164 + T+ RL L ++ F+ + +M +YE+ + Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + +F TP VV + +L +YDP CG+GG Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + P + +GQE ET + + I +++ + T ++ Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + Y ++N PF ++ +N E R+ G+P ++ + ++ H+ Sbjct: 292 DQHPDVQMDYVMANLPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL GGRA +V+++ + +GE +IR ++E DL+ +VALPT LF T I Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396 Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW + K ++ G+V I+A +L + R + +++ +I D + + Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 453 Query: 459 RENGK 463 K Sbjct: 454 WRGSK 458 >gi|256852236|ref|ZP_05557622.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 27-2-CHN] gi|260661732|ref|ZP_05862643.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 115-3-CHN] gi|297205598|ref|ZP_06922994.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus jensenii JV-V16] gi|256615282|gb|EEU20473.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 27-2-CHN] gi|260547479|gb|EEX23458.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 115-3-CHN] gi|297150176|gb|EFH30473.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus jensenii JV-V16] Length = 510 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 110/555 (19%), Positives = 210/555 (37%), Gaps = 64/555 (11%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + L + +W ++L G +++ V+L L+ + + E R + + Sbjct: 1 MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK---- 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 +S +A F+ + E + + I +++ + I Sbjct: 57 SDYPEDAEDSDAYLADNIFWVSPEARWDNIQKAAKTPEIGEVIDHAMESIEKDNESLRGI 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + L+++ L + S I + + ++ +YE+ +++F S + Sbjct: 117 LSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKN 172 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VV ++ T+YDP CG+GG + V + Sbjct: 173 GGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQ 221 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 L +GQE P T + + IR ++++ + T + DL G F Sbjct: 222 I---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------DTFTNDLHKGTHFD 272 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF K + K + R+ G+P + + ++ H+ +KL Sbjct: 273 YILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKLNPD---- 321 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+A VL++ L E IR+ LLE D I+AIVALP +F+ T I LW + Sbjct: 322 GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDMN 379 Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 K +RRG+ I+A +L + R +D+ ++I D Y + + D Sbjct: 380 KNSEDERDRRGETLFIDARELGEMVDRT---HREFSDEDIKKIADTYHAYRGTNEQKYED 436 Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ +I K+ + ++L L ++ + + +Q Sbjct: 437 MA--GFCKIAKLDEIAKNDYVLTPGRYVGLVEQ---EDDGEPYEVKMARLTAELKKQFEE 491 Query: 529 YGWAESFVKESIKSN 543 + +K+ +K Sbjct: 492 SDRLQDEIKDVLKEL 506 >gi|257094282|ref|YP_003167923.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046806|gb|ACV35994.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 539 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 99/484 (20%), Positives = 182/484 (37%), Gaps = 64/484 (13%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---- 57 S+A+L +W A+ L + ++ V+L L+ + + + + Sbjct: 8 KNDSSANLGFEAKLWLAADKLRNNMDAAEYKHVVLGLIFLKYISDTFDEHHARLVAGSVA 67 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDN 110 K + G+N + E A F+ + + + S +++ + + Sbjct: 68 KSGDYEGANPEDEDEYLAA-NVFWVPVDARWAQIQSRAKLPSIGKDVDDAMVALERDNPR 126 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSE 169 K + + + L ++ I+L + ++ ++E+ + +F S Sbjct: 127 LKGALNKNYGRADLDK----HRLGELIDLIGSIQLADVASRSKDLLGRVFEYFLTQFASA 182 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + F TP VV + +L +YDP CG+GG + V Sbjct: 183 EGKNGGQFYTPSCVVRVLVEMLAPYKG-----------RIYDPCCGSGGMFVQSEKFVEA 231 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 G + +GQE P T + + + +R +E+D ++ T +DL Sbjct: 232 HGGQLG---DISIYGQESNPTTRRLAIMNLALRGIEADFG------VENADTFRRDLHPD 282 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 R Y L+NPPF + + R+ G+P + + ++ H + L Sbjct: 283 LRADYVLANPPFNDS---------DWFRKDDDVRWQFGVPPKGNANFAWVQHFIHHLAPA 333 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G A + S N SGE +IR+ L+E DL++ +VALP LF+ T I LW Sbjct: 334 GFAGFVLA---NGSMSSN---QSGEGDIRQQLIEADLVDCMVALPGQLFYSTQIPVCLWF 387 Query: 410 LSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 L+ K ERR + I+A L T I R + D ++I+ Y + Sbjct: 388 LTKSKAAEAKRHFRERRKQTLFIDARKLGTLIDRV---HRELTDADLQKIVTTYHAWRGD 444 Query: 463 KFSR 466 + S Sbjct: 445 RVSH 448 >gi|303242501|ref|ZP_07328981.1| type I restriction-modification system, M subunit [Acetivibrio cellulolyticus CD2] gi|302589969|gb|EFL59737.1| type I restriction-modification system, M subunit [Acetivibrio cellulolyticus CD2] Length = 510 Score = 323 bits (827), Expect = 9e-86, Method: Composition-based stats. Identities = 104/496 (20%), Positives = 195/496 (39%), Gaps = 67/496 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + +W+ + G + + +L ++ + + + + +K+ Sbjct: 2 MEIKKYTQEEVNGTLWRACDTFRGKVDSSVYKDYVLVMLFIKYVSDIYKEHKEELMKKFD 61 Query: 61 AFGGSNIDLESFVKVAGY-SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111 D E + Y F + + + N+ I + + Sbjct: 62 N------DEEMVKRQMSYERFVLDEISTFDYIYDKRNQPNIGEIINTALAHVEEENKTKL 115 Query: 112 KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFG 167 + +F++ DF+S E+ +L + ++F ++L P V + V+ N YE++I F Sbjct: 116 RGVFKNIDFNSEAVLGNTKERNAMLKHLLEDFKDLDLRPSRLVGEDVIGNAYEYMIANFA 175 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S+ + +F TP +V L + L+ P +YDPTCG+G L A N + Sbjct: 176 SDAGKKGGEFFTPSEVSELLSRLV----------KPKENDRIYDPTCGSGSLLIKAFNKI 225 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 +GQE +TH++C M + ++ I G TLS L Sbjct: 226 --------PSGKAQIYGQERNGQTHSLCRMNMFLHSID-------DARIAWGDTLSNPLH 270 Query: 288 ----TGKRFHYCLSNPPFGKKWE-------KDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +F ++NPPF + + E RF G+P S G Sbjct: 271 LENDKLMKFQVVVANPPFSLDKWAMGFVGEGNDKEFKMEEGLDPYKRFSWGVPPSSKGDY 330 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H+ + L GGR +VL LF G E +IR+ +++ +L++A++ LP++ Sbjct: 331 AFVLHMLHSLAE----GGRMGVVLPHGVLFRGA---SEGKIRQKIIDMNLLDAVIGLPSN 383 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T I + + R V I+A+ + GK + + + ++I D Y Sbjct: 384 LFFGTGIPACILVFRQN---RDRDDVLFIDASGDNYYEK--GKNQNKLREADIKRIEDAY 438 Query: 457 VSRENGKFSRMLDYRT 472 EN + + + Sbjct: 439 EKYENIEKFAYVATKN 454 >gi|213962057|ref|ZP_03390322.1| type I restriction-modification system, M subunit [Capnocytophaga sputigena Capno] gi|213955410|gb|EEB66727.1| type I restriction-modification system, M subunit [Capnocytophaga sputigena Capno] Length = 510 Score = 323 bits (827), Expect = 9e-86, Method: Composition-based stats. Identities = 103/479 (21%), Positives = 179/479 (37%), Gaps = 63/479 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + ++ +WK + L + IL ++ L + + REKY Sbjct: 1 MEENKITRDTINAIVWKACDTLRPVMGSGQYKDYILTLLFVKYLSDVRKEKIESYREKYN 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA------- 113 + ++ F + + L NL I + Sbjct: 61 -----GDEAMVSRQLQKDRFIIPEKSTFDYLYDHRNEPNLGEIIDIGLTALEEANRSKLT 115 Query: 114 -IFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGS 168 +F F+S ++ +L K+ +F ++L P + V+ + YE+LI F Sbjct: 116 NVFRSISFNSEAVFGPTKQRNEILKKLLTDFLNLDLKPSHLAGNDVIGDSYEYLIAHFAG 175 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E + A +F TP +V L L+ +P + DP CG+G L V Sbjct: 176 EAGKKAGEFYTPAEVSTLLAKLV----------APKAGDRIADPACGSGSLLIKVAKEVQ 225 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 +GQE T A+C+ M + + NI G TL+ Sbjct: 226 GKN--------YSLYGQENNGSTWALCLMNMFLH-------EQDAANITWGDTLNHPQLI 270 Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 +F ++NPPF ++ + RF G+P + G F+ H+ Sbjct: 271 ENDALMKFDVVVANPPFSLDKWGVEN-----AASDPYQRFHRGIPPKTKGDYAFISHMI- 324 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 E GR +++ LF G S E IR+ L+E +L+EA++ LP +LF+ T+I Sbjct: 325 --ETTHETNGRVGVIVPHGVLFRG---SSEKTIRQQLIEENLLEAVIGLPANLFYGTSIP 379 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I + K V I+A+ + GK + + D+ I+ +Y + + K Sbjct: 380 AAILIFNRAKGAN--TDVLFIDASKAYE----SGKNQNHLRDEDISHIVSVYQNYKKAK 432 >gi|84489290|ref|YP_447522.1| putative type I restriction-modification system, methyltransferase subunit [Methanosphaera stadtmanae DSM 3091] gi|84372609|gb|ABC56879.1| putative type I restriction-modification system, methyltransferase subunit [Methanosphaera stadtmanae DSM 3091] Length = 508 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 116/540 (21%), Positives = 221/540 (40%), Gaps = 70/540 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 ++ +W A+ L G+ +F +L F R L LE T + + E+ Sbjct: 1 MSNYETKLWAIADKLRGNMDANEFKNYMLGFIFYRYLSEKLEMTLNELLEEDGINFQEAY 60 Query: 68 DLESFVK------VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASF------------ 107 E ++ + ++ +Y S++ + R LE +F Sbjct: 61 QDEELIEDLKEEGIEKLGYFIQPKYLFSSVINEIDKGREILECLSNAFIEINDSSFNTES 120 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 D+ + +FED D +S ++L EK L+ I ++ S I+ + ++ + YE+L Sbjct: 121 QDDFQNLFEDVDLNS--SKLGNTNAEKNKLISGILQDISDIDFELEKDNSDILGDAYEYL 178 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F S + A +F TP++V + ++ ++++YDPTCG+G L Sbjct: 179 ISQFASSAGKKAGEFYTPQEVSTILARIVTLNK--------TRLKSVYDPTCGSGSLLLR 230 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 K + +GQEL T+ + M++ ++ + NI+QG +L Sbjct: 231 VS----------KEADVSEFYGQELNQTTYNLARMNMILHGVKYN-----HFNIKQGDSL 275 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 D +F ++NPPF KW DK + E +G L S F+ H+ Sbjct: 276 ENDRHEELKFDAVVANPPFSAKWSSDKSFINDERFSGY-----GKLAPKSKADYAFVQHM 330 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 L G A+VL LF G A E IR++L++ + ++A++ LP ++F+ T Sbjct: 331 IYHLNEQ----GTLAVVLPHGVLFRGAA---EGTIRKYLIKELNYLDAVIGLPKNIFYGT 383 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + + +K E + I+A++ + +N + + + +I+ Y +RE Sbjct: 384 SIPTCILVF--KKCREEDDNILFIDASEYYEKAKN----QNKLRPEDIEKIVTTYKNREE 437 Query: 462 GK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 + +S + P + ++ + E RK+ + I+K Sbjct: 438 IEKYSHKATIEEIEENDYNLNIPRYVDTFEEEEPIDLDEVVREIRKIDEEMKEVDAKIIK 497 >gi|319428577|gb|ADV56651.1| N-6 DNA methylase [Shewanella putrefaciens 200] Length = 499 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 114/526 (21%), Positives = 203/526 (38%), Gaps = 58/526 (11%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 L +W A + G +D+ I P +R+ + + + D Sbjct: 7 KDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEYEDALTQIGDEELAKGD 66 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128 + +++ ++ S +S + ++ I + IF D +++ RL Sbjct: 67 MFHRIQIPELCHWD-SVFSETKDIGQALKDAFRG-IEMANPKLHGIFGDASWTNK-ERLS 123 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 LL + +F+ + L +V + M YE+LI+RF + ++ A +F TPR +V L Sbjct: 124 D-ELLATLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMV 182 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L P ++YDP CGTGG L + ++HV + G ++ GQE Sbjct: 183 NIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK---IKGQEKN 229 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKK 304 T A+ + + E +I +G TL + F + F ++NPPF K Sbjct: 230 LTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLKHDRLETFDCVIANPPFSLK 282 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 GR GL ++G ++ H+ L GR A+VL Sbjct: 283 EWGY-----DYWSADPYGRAKYGLAPKTNGDFAWVQHMFASLNES----GRMAVVLPHGV 333 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LF G A E IR LL+ + I A++ + ++LF+ T I + +L ++ + V + Sbjct: 334 LFRGGA---EGTIRENLLKENRIVAVIGVASNLFYGTGIPACILVLRKQRPVAHQDHVLI 390 Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--------------FSRMLDY 470 INA +++T G+ + +++ Q I DIY S + D Sbjct: 391 INAEEIFTK----GRAQNTLSETQADNIYDIYRQMRTKGPEADDIEGVARWVSHSEIEDN 446 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 V +PL I + L + + + + L Sbjct: 447 DFNLNIARYVQKPLEKETITVEEALKDFQLKLAALEKAEKELETLL 492 >gi|156978013|ref|YP_001448919.1| type I restriction enzyme M protein [Vibrio harveyi ATCC BAA-1116] gi|156529607|gb|ABU74692.1| hypothetical protein VIBHAR_06810 [Vibrio harveyi ATCC BAA-1116] Length = 526 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 97/471 (20%), Positives = 176/471 (37%), Gaps = 51/471 (10%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLES 71 +W + G + + IL L+ + + + ++ + + +S Sbjct: 36 VWSACDTFRGTVDPSIYKDFILTMLFLKYISDVRQDKVEELTTQFGDNKEMVEAMLASQS 95 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS--STIARLEK 129 F AG +F++ E + L + + K +F+D F+ +K Sbjct: 96 FKIPAGSTFWDLYEARFEAGNGSRIDQALHAIEEANGTKLKGVFQDISFNTDKLGDEKQK 155 Query: 130 AGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 +L + ++F L+ V+ N YE+LI+ F + + A +F TP +V L Sbjct: 156 NDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYTPPEVSDL 215 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 + +L P ++ DP CG+G L V + GQE Sbjct: 216 LSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQ---KNFGGSKQYALFGQE 262 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPF 301 T ++ M + + + I+ G T+ F +NPPF Sbjct: 263 AIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDSNGGLLHFDVVTANPPF 315 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 +D +N GRF G+P + G F+ H+ L+ GR +V+ Sbjct: 316 SLDKWGHED-----AENDHFGRFRRGVPPKTKGDYAFISHMIETLKPET---GRMGVVVP 367 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 LF S E +IR+ L+E +L++A++ LP LFF T I + I +K Sbjct: 368 HGVLFR---ASSEGKIRKQLIEENLLDAVIGLPEKLFFGTGIPAAILIFKKKK---DTND 421 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 V I+A+ + GK + ++ + +I+ Y S +N + Sbjct: 422 VMFIDASREF----KSGKNQNVLTAENIDKIVKTYRSGDNVDKYAYVATLD 468 >gi|118497300|ref|YP_898350.1| type I restriction-modification system, subunit M (methyltransferase) [Francisella tularensis subsp. novicida U112] gi|194323604|ref|ZP_03057381.1| type I restriction-modification system, M subunit [Francisella tularensis subsp. novicida FTE] gi|118423206|gb|ABK89596.1| type I restriction-modification system, subunit M (methyltransferase) [Francisella novicida U112] gi|194322459|gb|EDX19940.1| type I restriction-modification system, M subunit [Francisella tularensis subsp. novicida FTE] Length = 495 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 112/530 (21%), Positives = 204/530 (38%), Gaps = 73/530 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W + G + IL ++ L + + + ++Y Sbjct: 4 TTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSQRYNG---- 59 Query: 66 NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFE 116 D + + + F + L + + NL I + D + IF Sbjct: 60 --DEKMIERALSREKFRLDDSCTFDYLYANRDKENLGEIINAALDRIEEDNPQKLTGIFR 117 Query: 117 DFDFSS---TIARLEKAGLLYKICKNFS--GIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170 DF+ ++ +L + K+F+ ++L P + + V+ + YE+LI F S+ Sbjct: 118 GVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLDGNDVIGDSYEYLIANFASDS 177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ D YDPTCG+G L A + Sbjct: 178 GKKGGEFFTPSQVSSLLAMLVQAKDGDEI----------YDPTCGSGSLLIKAAKEIGSN 227 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 +GQE TH++C M + + NIQ G T+ Sbjct: 228 N--------FAIYGQERNSTTHSLCRMNMFLHDIN-------DANIQLGDTIRNPRILEN 272 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 K+F ++NPPF + + RF G+P S G F+ H+ L Sbjct: 273 DKLKKFDVVVANPPFSLD-----KWGADDVTSDVYSRFEFGIPPKSKGDYAFIQHMLASL 327 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GR A+V+ LF G A E +IR+ +++N+L++A++ LP++LFF T+I Sbjct: 328 NES----GRMAVVVPHGVLFRGAA---EGKIRQQIIDNNLLDAVIGLPSNLFFGTSIPAC 380 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + + +K V I+A++ + GK + + DD ++I D Y SRE+ K+S Sbjct: 381 IMVFKKQKDS---NDVLFIDASNEFEK----GKNQNKLTDDNIKKIFDTYKSRESLEKYS 433 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 + + P ++ ++ + T + ++ L Sbjct: 434 HVASLEEIKENDYNLNIP---RYVDTFEEEEPVDIEATKQTIAELEAKRE 480 >gi|258513150|ref|YP_003189406.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01] gi|256635053|dbj|BAI01027.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01] gi|256638108|dbj|BAI04075.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-03] gi|256641162|dbj|BAI07122.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-07] gi|256644217|dbj|BAI10170.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-22] gi|256647272|dbj|BAI13218.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-26] gi|256650325|dbj|BAI16264.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-32] gi|256653316|dbj|BAI19248.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656369|dbj|BAI22294.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-12] Length = 508 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 111/538 (20%), Positives = 204/538 (37%), Gaps = 59/538 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE S ++ +W + G + +L L+ + + +++Y Sbjct: 1 MTE-QISQDTINKALWNACDTFRGTVSPDTYRDYVLTMLFLKYISDVWQDHYDTYKKEYG 59 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113 + + E FV G FY + + L + + K Sbjct: 60 DNPELIEAMMAQERFVLPKGADFYTLYKERNTPGNGERIDKALHAIEEANGTKLKDAGKS 119 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGS 168 +F+D F+ +K +L + ++F+ +L+ P V + V+ N YE LI+ F + Sbjct: 120 VFQDISFNSDRLGDEKQKNTVLRHLLEDFAKPDLNLRPSRVGNLDVIGNGYEFLIKNFAA 179 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L +L SP ++ DP CG+ L V Sbjct: 180 SGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPACGSASLLMKCGKQVT 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-----LS 283 +H +GQE T + M + + + I+ G T L Sbjct: 230 Q---NHNGSKDYALYGQEAIGSTWSFAKMNMFLHGED-------NHRIEWGDTIRSPKLL 279 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D RF +NPPF +DA E H RF G+P + G F++H+ Sbjct: 280 DDKNHLMRFDVVTANPPFSLDKWGHEDAAEDVH-----HRFARGVPPKTKGDYAFILHMI 334 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + L+ GR +V+ LF G S E IR+ L+E +L++A++ LP LFF T I Sbjct: 335 STLKDRT---GRMGVVVPHGVLFRG---SSEGRIRQKLIEENLLDAVIGLPEKLFFGTGI 388 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462 + I + + V I+A+ + GK + ++ ++ +I++ Y +R++ Sbjct: 389 PAAILIFRKDRKTK---DVLFIDASREF----KAGKNQNVLTEENITKIVNTYRTRKDVD 441 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA--RLEADITWRKLSPLHQSFWLDI 518 K++ + + P + ++ + + + K +D Sbjct: 442 KYAHLATPDEIRENDYNLNIPRYVDTFEEEEEIDLNAVRKERAEIKAELAKLEAQMDA 499 >gi|58038320|ref|YP_190289.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H] gi|58000734|gb|AAW59633.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H] Length = 508 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 191/489 (39%), Gaps = 56/489 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE S ++ +W + G + +L L+ + + +++Y Sbjct: 1 MTE-QISQDTINKALWSACDTFRGTVSPDTYRDYVLTMLFLKYISDVWQDHYDGYKKEYG 59 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113 + + E FV G FY + + L + + K Sbjct: 60 DNPELIEAMMAQERFVLPKGSDFYTLYKDRNTPGNGERIDKALHAIEEANGTKLKDAGKS 119 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGS 168 +F+D F+ +K +L + ++F+ +L+ P V + V+ N YE LI+ F + Sbjct: 120 VFQDISFNSDKLGDEKQKNTILRHLLEDFAKPDLNLRPSRVGNLDVIGNGYEFLIKNFAA 179 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L +L SP ++ DP CG+ L V Sbjct: 180 SGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPACGSASLLMKCGKQVT 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-----LS 283 +HK +GQE T + M + + + I+ G T L Sbjct: 230 Q---NHKGSKDYALYGQEAIGSTWSFAKMNMFLHGED-------NHRIEWGDTIRNPKLL 279 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D RF +NPPF +DA E H RF G+P + G F++H+ Sbjct: 280 DDKNHLMRFDVVTANPPFSLDKWGHEDAAEDVH-----HRFARGVPPKTKGDYAFILHMI 334 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + L+ GR +V+ LF G S E IR+ L+E +L++A++ LP LFF T I Sbjct: 335 STLKDRT---GRMGVVVPHGVLFRG---SSEGRIRQKLIEENLLDAVIGLPEKLFFGTGI 388 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I + + V I+A+ + GK + ++ ++ +I+D Y +R++ Sbjct: 389 PAAILIFRKDRKTK---DVLFIDASREF----RAGKNQNVLTEENITKIVDTYRARKDVD 441 Query: 464 FSRMLDYRT 472 L Sbjct: 442 KYAHLATPD 450 >gi|253995602|ref|YP_003047666.1| adenine-specific DNA-methyltransferase [Methylotenera mobilis JLW8] gi|253982281|gb|ACT47139.1| Site-specific DNA-methyltransferase (adenine-specific) [Methylotenera mobilis JLW8] Length = 513 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 105/555 (18%), Positives = 198/555 (35%), Gaps = 56/555 (10%) Query: 1 MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + L +WK A+ L + ++ ++L L+ + E + + Sbjct: 1 MAKEQLTKQEPLEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDTFEQQFAKLAAGV 60 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112 + GS+ + +A F+ E S L S + +N I + + + K Sbjct: 61 GEYAGSD-PEDKDEYLAENVFFVPQEARWSYLQSQAKQPDIGKMVDNAMDAIEAENASLK 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171 + + L ++ I L + V+ +++E+ + F Sbjct: 120 GVLPKVFARDNL----DPASLGQLIDLVGNIALGDAKSRSADVLGHVFEYFLGEFALAEG 175 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TPR VV L +L ++DP CG+GG + +AD Sbjct: 176 KQGGQFYTPRSVVELLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFIADH- 223 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T + + IR +E+ + ++ + D + Sbjct: 224 --QGKVNDISIYGQESNQTTWRLAKMNLAIRGIEASQVKWNNEG-----SFLNDSHKDLK 276 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF + GR+ G+P + + +L H L Sbjct: 277 ADYIIANPPFNVSDWSGE-------LLRNDGRWQFGVPPAGNANFAWLQHFIYHLNPT-- 327 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL 410 G+A IVL+ L + SGE +IR+ L+E ++I+ IV LP LF T I LW + Sbjct: 328 --GQAGIVLAKGALTS--KTSGEGDIRKALIEQGNVIDCIVNLPAKLFLNTQIPAALWFM 383 Query: 411 SNR----KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 S K R ++ I+A +L I + + ++ +QI D Y + N S Sbjct: 384 SRNRTNGKFRNRSNEILFIDARNLGHLINR---RTKELSHTDIKQITDTYHNWRNPNGSY 440 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 D F + + R + ++L L D + + + ++++ Sbjct: 441 A-DVSGFC-ASVSLERVKELDYVLTPGRYVGLPDDEDDFNFAERFNALKAEYEAQLLEEE 498 Query: 527 YPYGWAESFVKESIK 541 + Sbjct: 499 KLNKAIAENLARVKL 513 >gi|325913365|ref|ZP_08175732.1| putative type I restriction-modification system, M subunit [Lactobacillus iners UPII 60-B] gi|325477291|gb|EGC80436.1| putative type I restriction-modification system, M subunit [Lactobacillus iners UPII 60-B] Length = 502 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 101/540 (18%), Positives = 203/540 (37%), Gaps = 60/540 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + +W A LWG ++ +VI+ LR + A + + + Sbjct: 1 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + + F+ E T+ +N I S + K Sbjct: 59 ---GDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIESENKTLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L + F+ I++ + ++ YE+ I +F + + Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YD CG+GG + + Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR +++D + T + DL + Sbjct: 222 NCG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + K + R+ G P + + ++ H+ + L Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L + GE EIR+ ++E+DLIE I++LP LF+ I LW +S Sbjct: 322 NGKIGLVLANGALSSQSC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVQIPVTLWFISQ 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +++GK I+A + + K R +++ +++ D + + +NG Sbjct: 380 NK--KQKGKTVFIDARKMGHMVDR---KHRDFSEEDIQKLADTFEAFQNG-----TLEDE 429 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + ++L +E + + L M ++ + Sbjct: 430 KGFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSDMFERSHELED 489 >gi|229526954|ref|ZP_04416351.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae 12129(1)] gi|229335566|gb|EEO01046.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae 12129(1)] Length = 507 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 100/540 (18%), Positives = 193/540 (35%), Gaps = 57/540 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60 + S+ +W + G + IL L+ + + + +Y Sbjct: 2 NDKINQDSINKALWNACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDGYKAEYGDE 61 Query: 61 -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115 + E FV SFY+ E L + + K +F Sbjct: 62 PELIEEMMKNERFVLPKAASFYSLYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L + ++F+ EL+ V+ N YE+LI+ F + Sbjct: 122 QDISFNTDKLGEEKQKNTILRHLLEDFAKPELNLKPSRVGTLDVIGNAYEYLIKNFAASG 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P ++ DP CG+G L V Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDSICDPACGSGSLLMKCGRKVVAN 231 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 +GQE T ++ M + + + I+ G T+ K Sbjct: 232 HGS----KQYALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF E ++ + RF G+P + G F++H+ Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAEHDKFSRFRRGVPPKTKGDYAFILHMIET 335 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GR +V+ LF G S E +IR+ L++ +L++ ++ LP LF+ T I Sbjct: 336 LKPKS---GRMGVVVPHGVLFRG---SSEGKIRQQLIDENLLDTVIGLPEKLFYGTGIPA 389 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464 + + K++ V I+A+ + GK + ++ + +I+ Y + + K+ Sbjct: 390 AILLFKKNKSD---DNVMFIDASRDF----KAGKNQNLLTQENIAKIVATYHAGNDVDKY 442 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + P + ++ + + +L ++ K + + Sbjct: 443 AYVASLEEIKENDYNLNIPRYVDTFEEEEEIDLMAVRAQREQLKAQLTELEAEMAKYLEE 502 >gi|46580119|ref|YP_010927.1| type I restriction-modification system, M subunit [Desulfovibrio vulgaris str. Hildenborough] gi|46449535|gb|AAS96186.1| type I restriction-modification system, M subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311233887|gb|ADP86741.1| type I restriction-modification system, M subunit [Desulfovibrio vulgaris RCH1] Length = 506 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 103/479 (21%), Positives = 184/479 (38%), Gaps = 52/479 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63 S + + +W + G + + +L L+ + + + +Y Sbjct: 6 SQKEVNDAVWNACDTFRGVVDASAYKDYVLTMLFLKYISDVWQDNYDTYKAEYGDAPELI 65 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + E FV SFY E L + + +F+D F+ST Sbjct: 66 EEMMKNERFVLPKDASFYALYERRFEAGNGERIDKALHAIEEANMGKLNDVFQDISFNST 125 Query: 124 --IARLEKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178 +K +L + ++FS EL+ P + + ++ N YE LI+ F + + A +F Sbjct: 126 KLGDDKQKNDILRHMLEDFSKPELNLRPSRIGNLDIIGNAYEFLIKHFAASSGKKAGEFY 185 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L L+ +P + DP CG+ L + D + K Sbjct: 186 TPPEVSQLIAELV----------NPQEGDEICDPACGSASLLMKCAKLIKDRFGNRK--- 232 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFH 293 +GQE T ++ M + + + I+ G TL L K F Sbjct: 233 -YALYGQEAIGSTWSLAKMNMFLHSED-------NHRIEWGDTLRNPLLLDGDDHLKHFD 284 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + + GRF G+P + G F++H+ L+ G Sbjct: 285 IVVANPPFSLDKWGHEA-----AEADRFGRFRRGIPPKTKGDYAFILHMIETLKP---GT 336 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +V+ LF S E EIR+ L++ +L++ ++ LP LF+ T I + + Sbjct: 337 GRMGVVVPHGVLFR---ASSEGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKN 393 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + V I+A+ + GK + + D+ +++LD +RE+ L Sbjct: 394 KKD---NNVLFIDASREYQD----GKNQNFLRDEDIQKVLDTAKARESVDKYAYLATLE 445 >gi|163801600|ref|ZP_02195498.1| type I restriction-modification system methyltransferase subunit [Vibrio sp. AND4] gi|159174517|gb|EDP59319.1| type I restriction-modification system methyltransferase subunit [Vibrio sp. AND4] Length = 499 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 115/533 (21%), Positives = 203/533 (38%), Gaps = 68/533 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +W A + G +D+ I P +R+ + E+ Sbjct: 5 NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFEEAMEQVG------ 58 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + + + + + L+ I + IF D ++ Sbjct: 59 -DEELAKGDMFHRIQIPANCHWKDVFAETKDIGQALKDSFRGIELENPQLHGIFGDASWT 117 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + +F+ + L +V + M YE+LI+RF + ++ A +F TPR Sbjct: 118 NK-ERLSD-ELLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPR 175 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L +L P ++YDP CGTGG L + ++HV + G ++ Sbjct: 176 TIVRLMVNIL----------DPQANESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 GQE T A+ + + E I +G TL F + F ++ Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQEDFE-------IVRGDTLRDPKFLQNDQLENFDCVIA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF K + GR GL ++G ++ H+ L GR A Sbjct: 276 NPPFSLKEWGH-----DYWTSDPYGRASFGLAPKTNGDFAWVQHMFASLNDE----GRMA 326 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL LF G A E +IR LL+ + I A++ + ++LF+ T I + +L + EE Sbjct: 327 VVLPHGVLFRGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKARPEE 383 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG--------------K 463 + V ++NA +++T G+ + +++ Q +I DIY Sbjct: 384 HKDHVLIVNAEEIFTK----GRAQNTLSEPQADEIYDIYQKMRTKGPKADDIEGVARWVP 439 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 S + + V +PL I + L + + +++ L Sbjct: 440 HSEIEENDFNLNIARYVQKPLEEETITVEEALKDFQQKLVALEVAEQELEALL 492 >gi|328545367|ref|YP_004305476.1| Type I restriction-modification system, M subunit [polymorphum gilvum SL003B-26A1] gi|326415109|gb|ADZ72172.1| Type I restriction-modification system, M subunit [Polymorphum gilvum SL003B-26A1] Length = 505 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 106/465 (22%), Positives = 175/465 (37%), Gaps = 56/465 (12%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESF 72 W + G + IL L+ + R +Y A ++ E F Sbjct: 15 WAACDTFRGAVDAGQYKDYILVMLFLKYISDLWNDHVETYRNQYGGDEARIRRRLERERF 74 Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA---RLEK 129 + G SFY+ LE + + +F + DF+S ++ Sbjct: 75 ILPEGASFYDLYAQRNEANIGELINIALEKIEDANRAKLEGVFRNIDFNSEANLGRPKDR 134 Query: 130 AGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L + ++F+ ++L P V + ++ Y +LI RF S+ + A +F TP V L Sbjct: 135 NRRLKNLLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKAGEFYTPTAVSRLL 194 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L +P T+ DP CG+G L A V +GQE+ Sbjct: 195 AKL----------AAPQPGNTICDPACGSGSLLIQASQEVGSEN--------FALYGQEV 236 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGK 303 T A+ M + + I+ TL+ RF L+NPPF Sbjct: 237 NGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDHLMRFDVVLANPPFSL 289 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 ++ + RF G+P S G F+ H+ GR A+++ Sbjct: 290 DKWGAEN-----AASDPYNRFWRGIPPRSKGDYAFITHMIEIARRQS---GRVAVIVPHG 341 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERR 419 LF G A E IR+ L+E +L++A+V LP +LF T I + I + E R Sbjct: 342 VLFRGGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPVAILIFDRSREEGGANAGR 398 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 V I+A+ +T GK + ++++ ++L+ Y SR Sbjct: 399 RDVLFIDASKEFTP----GKTQNVMDEAHVAKVLETYRSRAEVPR 439 >gi|259507945|ref|ZP_05750845.1| type I restriction-modification system, M subunit [Corynebacterium efficiens YS-314] gi|259164440|gb|EEW48994.1| type I restriction-modification system, M subunit [Corynebacterium efficiens YS-314] Length = 523 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 103/562 (18%), Positives = 194/562 (34%), Gaps = 70/562 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L + +WK A+ L G + + VIL L+ + A R+ + ++ +A G ++ Sbjct: 1 MKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMTDD 60 Query: 68 DLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDF-- 118 + F+ L N + + + + Sbjct: 61 QTAMLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAIMV 120 Query: 119 ---DFSSTIARL-----EKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGS 168 S+T+ R+ L ++ F+ ++ +YE+ + +F Sbjct: 121 ANPALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARDLLGEVYEYFLEKFAR 180 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +F TP L + +YDP CG+GG + Sbjct: 181 AEGKRGGEFYTP-----------AGVVRVLVEVLEPTSGRVYDPCCGSGGMFVQTEKFLD 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + +GQEL T + + I L ++ + G T ++DL Sbjct: 230 AHNKDRTA---IAVYGQELNERTWRMAKMNLAIHGLNANLGP------RWGDTFARDLHP 280 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + Y ++NPPF ++ +N E R+ G+P ++ + ++ H+ +KL Sbjct: 281 EMQADYIMANPPFN---------IKDWARNEEDPRWRYGVPPKNNANYAWIQHIISKLAP 331 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 + G A + S N GE +IR L+E DL+ +VALPT LF T I +W Sbjct: 332 GGSAGVVMA---NGSMSSNSG---GEGKIRAELVEADLVSCMVALPTQLFRSTGIPVCVW 385 Query: 409 ILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + KT +R G+V I+A +L I R ++D+ +I D + + Sbjct: 386 FFAKDKTVGDQGAIDRTGQVLFIDARNLGHMIDRAE---RALSDEDIAKIADTFHTWRGT 442 Query: 463 KFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 ++ D F Y + + L + Sbjct: 443 PSAKGRTYEDEAGFCYSA-TLEEIKDADYALTPGRYVGAAE---IEDDGEPIDEKIERLK 498 Query: 520 KPMMQQIYPYGWAESFVKESIK 541 K ++ Q + V+E ++ Sbjct: 499 KELLDQFDESERLAAVVREQLR 520 >gi|312875021|ref|ZP_07735039.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LEAF 2053A-b] gi|311089416|gb|EFQ47842.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LEAF 2053A-b] Length = 502 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 98/540 (18%), Positives = 203/540 (37%), Gaps = 60/540 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + +W A LWG ++ +VI+ LR + A + + + Sbjct: 1 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + F+ E T+ +N I + + K Sbjct: 59 ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S +A+ +L + F+ I++ + ++ YE+ I +F + + Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YD CG+GG + + Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR +++D + T + DL + Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + K + R+ G P + + ++ H+ + L Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L + GE EIR+ ++E+DLIE I+++P+ LF+ ++ LW ++ Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISMPSKLFYSVTLSVTLWFITK 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +++GK I+A + + K R D+ +++ + + + +NG Sbjct: 380 DK--KQKGKTLFIDARHMGHMVDR---KHRDFTDEDIQKLANTFEAFQNG-----TLEDK 429 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + ++L +E + + L M + + Sbjct: 430 KGFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSEMFAKSHELED 489 >gi|187930243|ref|YP_001900730.1| N-6 DNA methylase [Ralstonia pickettii 12J] gi|187727133|gb|ACD28298.1| N-6 DNA methylase [Ralstonia pickettii 12J] Length = 503 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 118/523 (22%), Positives = 212/523 (40%), Gaps = 52/523 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-AVREKYLAFGGS 65 S L +++W+ A L G D+ + I P +R+ + A+ E + Sbjct: 5 SQQELESYLWRAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWDEEYQSALVESDGDLSYA 64 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-IFEDFDFSSTI 124 ++ +N + +GS + + + I + + IF D +++ Sbjct: 65 QFAENHRFQIPEGVHWNDVRQTPKNVGS-AIQKAMRA-IELANPDMLDGIFGDASWTNR- 121 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 RL L + ++FS L VP+ + N YE+LI++F + A +F T R VV Sbjct: 122 ERLPD-ETLKDLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTVV 180 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 HL T LL +P ++YDPTCGTGG L A++ V G ++ +G Sbjct: 181 HLMTQLL----------APLAGESIYDPTCGTGGMLISALDEVKRSGGEYRTL---TLYG 227 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPP 300 QE T ++ + + + + I +G TL++ ++F L+NPP Sbjct: 228 QERNLITSSIARMNLFLHGV-------VDFEIIRGDTLAEPKHIEGDRLRQFDVILANPP 280 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + K + + + GR G P F H+ L GR A++ Sbjct: 281 YSIKQWD-----REAWSSDKWGRNTLGTPPQGRADYAFHQHILTSLTTK----GRCAVLW 331 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 LF E +R ++E D +EA++ L +LF+ + + + + I + RKT ER+G Sbjct: 332 PHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCVVICNRRKTSERKG 387 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK 479 KV I+A + T R + + + +R+IL Y + F+++ G Sbjct: 388 KVIFIDAVNEVTRERA----QSFLKPEHQRRILAAYEVFADEPGFAKVATLAEIGGNGGN 443 Query: 480 VLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + PL + + + + W K ++FW + Sbjct: 444 LSIPLYVKRIAAVVATDSNGDAVSLRSAWDKWQTDGRTFWQQM 486 >gi|206603733|gb|EDZ40213.1| N-6 DNA methylase [Leptospirillum sp. Group II '5-way CG'] Length = 524 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 100/482 (20%), Positives = 179/482 (37%), Gaps = 63/482 (13%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +W+ A+ L + ++ V+L L+ + + E + + + E Sbjct: 17 LETKLWQAADKLRNNMDAAEYKHVVLGLLFLKYVSDSFEEHHAKLTGEMDQGANPEDPDE 76 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSST 123 A F+ E S L + R + I + + KA+ DF+ Sbjct: 77 Y---RADNVFWVPKEARWSVLQANAKRPEIGKVIDDAMVAIERDNTSLKAVLPK-DFARP 132 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 L ++ I L ++ +YE+ + +F S + F TPR Sbjct: 133 G---LDKQRLGELIDLVGTIGLGDKEHRSRDMLGRVYEYFLSQFASAEGKKGGQFYTPRS 189 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV + +L +YDP CG+GG + + G + Sbjct: 190 VVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEVHGGRIG---DISI 235 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T + + IR + ++ ++ + + +DL + Y L+NPPF Sbjct: 236 YGQESNHTTWKLAAMNLAIRGIAANLGKENA------DSFHRDLHPDLKADYILANPPFN 289 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + E R+ G+P + + + ++ H + L G A VL++ Sbjct: 290 SSDWGGD-------RLREDRRWVYGVPPVGNANFAWVQHFISHLAP----NGVAGFVLAN 338 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415 L SGE EIR+ ++E D+++ IVALP LF+ T I LW +S K Sbjct: 339 GSL--SSNQSGEGEIRKNMVEGDIVDCIVALPGQLFYSTQIPVSLWFVSRNKKNGKGQEG 396 Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 +R G++ I+A L + + R R ++D+ +I Y + D Sbjct: 397 HALRDRSGEILFIDARKLGFMADRT----HRDLSDEDIAKIAGTYHHWRGDGDGQYEDIP 452 Query: 472 TF 473 F Sbjct: 453 GF 454 >gi|167631092|ref|YP_001681591.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1] gi|167593832|gb|ABZ85580.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1] Length = 486 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 96/523 (18%), Positives = 191/523 (36%), Gaps = 65/523 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77 A+ L G+ + +++ V+L L+ + + E + + + G + + + Sbjct: 1 MADKLRGNIEASEYKHVVLGLIFLKYISDSFEEKYNELVAE-----GEGFEEDIDAYMED 55 Query: 78 YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIARLEKA 130 F+ E + + + I + + K + + + Sbjct: 56 NIFFVPPEARWDYIKEQAKQPTIGQIIDDAMVAIEKNNPSLKGVLPKNYARPELDK---- 111 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L ++ FS + V+ +YE+ + +F +F TP +V L + Sbjct: 112 TKLGELIDLFSFKVGDKEAKAKDVLGRVYEYFLGKF----GSSEGEFYTPPSIVKLLVEM 167 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 + +YDP CG+GG + V + + +GQE Sbjct: 168 I-----------EPYKGRIYDPCCGSGGMFVQSQRFVEEH---QGRRDDIHVYGQEYTAT 213 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 T +C + IR ++++ + T + DL R Y L+NPPF K Sbjct: 214 TWRLCKMNLSIRGIDANLGE------RDDDTFANDLHKSLRADYILANPPFNIKDWGA-- 265 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++ R+ GLP ++ + ++ H+ +KL G A + S L N Sbjct: 266 -----NRLANDARWKYGLPPANNANYAWIQHIISKLSPSGVAGFVMA---NGSMLTN--- 314 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLIN 426 S ESEIR+ ++E L++ IV +P++LF+ I LW LS K +R ++ I+ Sbjct: 315 TSNESEIRKNIIEAKLVDCIVTMPSNLFYTVTIPVCLWFLSKNKMPKGLRDRSDEILFID 374 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLR 485 A + K R+++++ ++I Y + + G+ + G+ + + Sbjct: 375 ARKMGYMEDR---KHRVLSEEDIQRIAQTYRNWKKGEGYEDV----KGFCKSATLAEVRE 427 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 +IL +E + S L M + Sbjct: 428 HEYILTPGRYVGVEEVEADTEAFDEKMSRLTGELAEMFAKSRH 470 >gi|251771139|gb|EES51722.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum] Length = 525 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 101/493 (20%), Positives = 182/493 (36%), Gaps = 64/493 (12%) Query: 2 TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 T T A+ L +W+ A+ L + ++ V+L L+ + A E + Sbjct: 6 TSKTSDASPLGFEAKLWQAADKLRNNMDAAEYKHVVLGLIFLKYVSDAFEEFHDRLIST- 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112 + A F+ E STL + R + I + + K Sbjct: 65 -EIAAEADPEDPDEYRAENIFWVPPEARWSTLQAHAKRPEIGKIIDDAMVAIERENKSLK 123 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVS 171 AI +++ + L ++ I D ++ +YE+ + +F S Sbjct: 124 AILPKDYARTSLDK----QRLGELVDLVGTIGLGQKDHRSKDILGRVYEYFLSQFASAEG 179 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TPR VV + +L ++DP CG+GG + + G Sbjct: 180 KRGGQFYTPRSVVSVLVEMLAPYKG-----------RVFDPCCGSGGMFVQSEKFIEAHG 228 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T + + +R +E++ + + + +DL + Sbjct: 229 GRIG---DISIYGQESNNTTWKLAAMNLALRGIEANLGK------ENDDSFHRDLHPDLK 279 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + E R+ G+P + + ++ + L Sbjct: 280 ADYILANPPFNSSDWGGE-------RLREDKRWVYGVPPTGNANYAWVQNFIYHLAP--- 329 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A VL++ L S E EIR+ ++E D+++ IVA+P LF+ T I LW +S Sbjct: 330 -NGVAGFVLANGSL--SSNQSNEGEIRKSMVEADIVDCIVAMPGQLFYSTQIPVSLWFVS 386 Query: 412 NRKT----------EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 K +R G++ I+A L + S R R ++ D +I D Y + Sbjct: 387 RNKKNGKGVEGRPLRDRSGEILFIDARKLGFMSDRT----HRDLSVDDLARITDTYHNWR 442 Query: 461 NGKFSRMLDYRTF 473 D + F Sbjct: 443 GDGTGTYEDVQGF 455 >gi|329736387|gb|EGG72656.1| putative type I restriction-modification system, M subunit [Staphylococcus epidermidis VCU045] Length = 498 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 106/535 (19%), Positives = 196/535 (36%), Gaps = 60/535 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G ++ V L L+ + + E + K + E Sbjct: 9 KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQDEYL- 65 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126 A F+ E + + + I +++ K + + + Sbjct: 66 --AENIFWVPKEARWHYINDNAKKPEIGQLIDKAMIAIENENESLKGVLPKEYARPALDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +YE+ I +F S + A +F TP +V L Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V H + +GQE Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR ++++ + T DL G + Y L+NPPF Sbjct: 226 SNPTTWKLAKMNLAIRGIDNNLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + R+ G+P + + ++ H+ +KL G A VL++ + Sbjct: 280 GQE-------RLLDDYRWQFGVPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 E EIR+ L+E DL+E IV LP LF+ T I LW +SN K ER+ ++ I+ Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--ERKNEILFID 384 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLR 485 A ++ + K +D+ +++ Y S + D G+ +I + Sbjct: 385 AREIGHMVSRTLK---EFSDEDIQKVAQTYHSWKGTNDKSYEDIA--GFCKIANLEEVKN 439 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL L + + I + +Q E +++S+ Sbjct: 440 NEYILTPGRYVGLAD---VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL 491 >gi|148656810|ref|YP_001277015.1| N-6 DNA methylase [Roseiflexus sp. RS-1] gi|148568920|gb|ABQ91065.1| N-6 DNA methylase [Roseiflexus sp. RS-1] Length = 523 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 118/531 (22%), Positives = 197/531 (37%), Gaps = 69/531 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 ++L ++W A + G F ILP L+RL + + + Y G Sbjct: 5 STLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFDDEIKRLSDVYGNCGLVLHL 64 Query: 69 LESFVKVAGY----SFYNTSEYSLSTLGSTNTR---NNLESYIAS---FSDNAKAIFEDF 118 LE + G FY + R L + + + + Sbjct: 65 LEQ-ERERGQVHLVRFYIPENARWKAIRQRGVRTLGQFLTDAVRDVARENPALQGVINMV 123 Query: 119 DFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 DF++T R+ L K+ S L V ++ YE+L+R+F + A + Sbjct: 124 DFNATTAGQRIIPDDHLSKLIDVLSRHRLGLQDVEPDILGRAYEYLLRKFAEGQGQSAGE 183 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L LL P T+YDPTCG+GG L + + Sbjct: 184 FYTPGEVAILMAQLL----------DPQPRMTVYDPTCGSGGLLIKCHLRLLETHGVRSG 233 Query: 237 PPILV---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 GQE+ P T A+ +I LE+D I+ G T+ F Sbjct: 234 RKFSTATPGVAPLRLFGQEINPATFAMARMNAVIHDLEAD--------IRIGDTMRHPAF 285 Query: 288 TG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + F +NP + +K+ + ++N RF G+P S +L H+ Sbjct: 286 VDAAGRLQTFDRVTANPMWNQKFPVET------YENDPYERFTLGIPPHSSADWGWLQHM 339 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFF 399 L G+ A+VL + + G G E +IR+ +E DLIEA++ LP +LF+ Sbjct: 340 LASLHER----GKMAVVLDTGAVSRGSGNQGSNRERDIRKAFVERDLIEAVILLPENLFY 395 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T + +++ RK RG++ LINA+ + G+ + + ++ +I DIY Sbjct: 396 NTTAPGIILVVNRRKAR--RGEILLINASQQFAK----GRPKNYLTEEHIARIADIYHQW 449 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 G + + + I R + L + + L Sbjct: 450 RVGA-----NNHSPLHTIITTDEAARNDYNLSPSRYVSVNGKEDVLPLEEA 495 >gi|49257053|dbj|BAD24842.1| HsdM protein [Staphylococcus aureus] Length = 504 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 106/539 (19%), Positives = 197/539 (36%), Gaps = 62/539 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G ++ V L L+ + + E + + + Sbjct: 9 KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-----KLDPYADEEDQDE 63 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126 +A F+ E + R + I +++ K + + + Sbjct: 64 YLAENIFWVPKEARWQYINDNAKRPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +YE+ I +F S + A +F TP +V L Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V H + +GQE Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +++D + T DL G + Y L+NPPF Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + R+ G+P + + ++ H+ +KL G A VL++ + Sbjct: 280 GQE-------RLLDDYRWQFGIPPTGNANYAWIEHMISKLAP----NGIAGFVLANGSMS 328 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422 E EIR+ L+E DL+E IV LP LF+ T I LW +SN K +ERR ++ Sbjct: 329 TSNKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTPIPVCLWFISNNKGQNGKKERRNEI 386 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VL 481 I+A ++ I K +D+ +++ Y + + D G+ ++ + Sbjct: 387 LFIDAREIGHMISRTLK---EFSDEDIQEVAQTYHAWKGTNDKSYEDIA--GFCKVANLE 441 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL L + + I + +Q E +++S+ Sbjct: 442 EVKNNEYILTPGRYVDLAD---IEEDEEPFEQKMERITSELSEQFAKSKKLEDQIRKSL 497 >gi|89075002|ref|ZP_01161447.1| type I restriction-modification system, M subunit [Photobacterium sp. SKA34] gi|89049241|gb|EAR54805.1| type I restriction-modification system, M subunit [Photobacterium sp. SKA34] Length = 521 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 100/542 (18%), Positives = 190/542 (35%), Gaps = 60/542 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63 + + +W + G + + +L L+ + + + ++ A Sbjct: 23 NQDEINKTVWSACDTFRGTVDPSIYKDFVLTMLFLKYISDVRQDKVEELTAQFGDNQAMI 82 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-- 121 + + +SF G +F++ E+ + L + K +F+D F+ Sbjct: 83 EAMLASQSFKIPTGSTFWDLYEHRFEAGNGSRIDQALHAIEEENGTKLKGVFQDISFNTD 142 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +K +L + ++F L+ V+ N YE LI+ F + + A +F Sbjct: 143 KLGDEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEFLIKHFAASSGKSAGEFY 202 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L + +L P + DP CG+G L + + Sbjct: 203 TPPEVSDLLSIIL----------EPQQGDEICDPACGSGSLLMKCGKQIQ---KNFGGSK 249 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFH 293 GQE T ++ M + + + I+ G T+ F Sbjct: 250 QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDANGGLLHFD 302 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPF +D ++ GRF G+P + G F+ H+ L+ Sbjct: 303 VVTANPPFSLDKWGHED-----AESDHFGRFRRGIPPKTKGDYAFISHMIETLKPET--- 354 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR +V+ LF S E +IR+ L++ +L++ ++ LP LFF T I + + Sbjct: 355 GRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILLFKKH 411 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 KT+ KV I+A+ + GK + + D ++I+D Y +R+N L Sbjct: 412 KTD---NKVLFIDASREF----KSGKNQNALTSDNIQKIVDTYKARKNVDKYAYLA---- 460 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 + + L+ + L + + G+ E Sbjct: 461 -----TLEEIAENDYNLNIPRYVDTFEEEAEIDLMAVRSERLALKTELADLDAEMAGYLE 515 Query: 534 SF 535 Sbjct: 516 EL 517 >gi|163743541|ref|ZP_02150918.1| type I restriction system adenine methylase [Phaeobacter gallaeciensis 2.10] gi|161383126|gb|EDQ07518.1| type I restriction system adenine methylase [Phaeobacter gallaeciensis 2.10] Length = 520 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 104/474 (21%), Positives = 186/474 (39%), Gaps = 60/474 (12%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + A A ++K A+ + G + +++ V L L+ + A + + Sbjct: 1 MANTSRQADLDFAADLFKAADKMRGGLEPSEYKHVALGLIFLKYISEAFQAMHDQL---- 56 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------SDN 110 A + +A F+ S + N+ I ++ Sbjct: 57 -AKDDFADPEDPEEYLAENIFWVPETARWSFIQDNARSENIGKIIDDAMEAIEAEPTNET 115 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169 K + T+ + +L ++ FS +++H ++ +YE+ I F S Sbjct: 116 LKGVLPKNYARPTLDK----TMLGELVDLFSNVKMHDSADRARDLLGRVYEYFISGFASA 171 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TPR VV +L +YDP CG+GG + + D Sbjct: 172 EGKRGGEFFTPRSVVRTLVEML-----------EPYQGRVYDPCCGSGGMFIQSEKFIED 220 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 G + P L +GQE+ T + + + +++D D + + KD G Sbjct: 221 HGGN---PLNLSVYGQEINHTTWRLAKMNLAVHGIDADIAWDSAG------SFHKDAHPG 271 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + Y L+NPPF + + E R+ G P + + ++ H+ + L Sbjct: 272 LKADYILANPPFNISDWGGE-------RLLEDDRWQYGPPPKGNANFAWIQHIIHHLAPR 324 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G A +VL++ + SGE EIR+ L+E D ++ +VALP LF+ T I LWI Sbjct: 325 ----GHAGVVLANGSM--SSQTSGEGEIRKRLIEEDRVDCMVALPGQLFYSTQIPVCLWI 378 Query: 410 LSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 LS K+ +RRG+V I+A ++ + RR +D+ +I Y Sbjct: 379 LSRDKSANGLRDRRGEVLFIDARNMGHMVDRV---RREFSDEDIERIAGTYRRW 429 >gi|242279139|ref|YP_002991268.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638] gi|242122033|gb|ACS79729.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638] Length = 856 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 110/499 (22%), Positives = 203/499 (40%), Gaps = 68/499 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT+ + +SL ++K + L G+ + +++ + I L+RL R A+ + L Sbjct: 1 MTQK-LTLSSLERKLFKACDILRGNMEASEYKEYIFGMLFLKRLSDQFHKDR-AILAQDL 58 Query: 61 AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLG------STNTRNNLESYIASFSDNAK 112 A G K Y+FY + + L + + + + Sbjct: 59 AAKGIPEEAKAALLDKRNQYTFYVPESARWEQIQHIKKDVGSGLNKALAAIEEANPETLQ 118 Query: 113 AIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSE 169 + + +F+ + L+ + L + ++F+ I L D + YE LI+ F Sbjct: 119 DVLKSINFNRKVGQRTLDDS-TLVEFIQHFNDIPLSNDDFEFPDLLGAAYEFLIKHFADS 177 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP +VV ++ P +YDPT G+GG L + +V + Sbjct: 178 AGKKGGEFYTPTEVVRTLVEII----------EPQEGMGIYDPTAGSGGMLIQSAKYVQE 227 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285 CG + K L GQEL T ++C M++ + +S++I+Q L + Sbjct: 228 CGGNVK---NLSLAGQELAGSTWSMCKMNMILHGI-------VSQDIRQEDVLKRPLHLK 277 Query: 286 --------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSM 336 K + ++NPPF + + K + + RF LP + Sbjct: 278 KDPDQNNQNHELKTWDRVIANPPFSQNYSKKEMLFKD--------RFDVWLPTTGKKADL 329 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 +F+ H+ L+ G+ A+++ LF G E R +E ++EAIV LP+ Sbjct: 330 MFVQHMVAVLK----NNGKCAVIMPHGVLFRGGE---ERNCREKFIEKGILEAIVGLPSG 382 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T I + +L+ +R+ +V INA + EGK + + + +I +Y Sbjct: 383 LFYGTGIPACILVLNKEGAADRK-EVLFINADREY----KEGKNQNKLRPEDIAKITHVY 437 Query: 457 VSREN-GKFSRMLDYRTFG 474 +R K+SRM+ + Sbjct: 438 RNRLEVDKYSRMVPVQELE 456 >gi|254372672|ref|ZP_04988161.1| hypothetical protein FTCG_00237 [Francisella tularensis subsp. novicida GA99-3549] gi|151570399|gb|EDN36053.1| hypothetical protein FTCG_00237 [Francisella novicida GA99-3549] Length = 495 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 110/530 (20%), Positives = 202/530 (38%), Gaps = 73/530 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W + G + IL ++ L + + + ++Y Sbjct: 4 TTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSQRYNG---- 59 Query: 66 NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFE 116 D + + + F + L + + NL I + D + IF Sbjct: 60 --DEKMIERALSREKFRLDDSCTFDYLYANRDKENLGEIINAALDRIEEDNPQKLTGIFR 117 Query: 117 DFDFSS---TIARLEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEV 170 DF+ ++ +L + K+F+ +L + V+ + YE+LI F S+ Sbjct: 118 GVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLEGNDVIGDSYEYLIANFASDS 177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ + YDPTCG+G L A + Sbjct: 178 GKKGGEFFTPSQVSSLLAMLVQAKEGDEI----------YDPTCGSGSLLIKAAKEIGSN 227 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 +GQE TH++C M + + NIQ G T+ Sbjct: 228 N--------FAIYGQERNSTTHSLCRMNMFLHDIN-------DANIQLGDTIRNPRILEN 272 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 K+F ++NPPF + + RF G+P S G F+ H+ L Sbjct: 273 DKLKKFDVVVANPPFSLD-----KWGADDLTSDVYSRFEFGIPPKSKGDYAFIQHMLASL 327 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GR A+V+ LF G A E +IR+ +++N+L++A++ LP++LFF T+I Sbjct: 328 NES----GRMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPAC 380 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + + +K V I+A++ + GK + + DD ++I D Y SRE+ K+S Sbjct: 381 IMVFKKQKDS---NDVLFIDASNEFEK----GKNQNKLTDDNIKKIFDTYKSRESLEKYS 433 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 + + P ++ ++ ++T + ++ L Sbjct: 434 HVASLEEIKENDYNLNIP---RYVDTFEEEESVDIEVTKQAIAELEAKRE 480 >gi|91217919|ref|ZP_01254872.1| type I restriction-modification system, M subunit [Psychroflexus torquis ATCC 700755] gi|91183896|gb|EAS70286.1| type I restriction-modification system, M subunit [Psychroflexus torquis ATCC 700755] Length = 505 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 103/546 (18%), Positives = 207/546 (37%), Gaps = 57/546 (10%) Query: 1 MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M+ + + +W + G +++ IL F ++ L + +A++E+Y Sbjct: 1 MSNKIKPTQDQINAALWNACDTFRGAVDSSEYKNYILVFMFIKYLSDVWKDHYNALKEQY 60 Query: 60 ---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 + E FV SF E+ T S + +F Sbjct: 61 GDDEELIQRKLKRERFVLPDKCSFDYIYEHRNDTDIGEKIDKIFAQIEESNLEKLDGVFR 120 Query: 117 DFDFS--STIARLEKAGLLYKICKNFS--GIELHPDTVP--DRVMSNIYEHLIRRFGSEV 170 + F+ ++ L + +F+ ++ P ++ Y +L+ +F S Sbjct: 121 NISFNSDKLGQTKDRNRRLKNLINDFAKPELDFRPSLWEGKQDILGEAYMYLLEKFASGA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP++V L L+ SP ++DPTCG+G L D Sbjct: 181 GKKGGEFFTPKEVSGLLAKLV----------SPKEGDRIFDPTCGSGSLLIKVAEETKDA 230 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 + +GQE +T A+ + ++ S I+ T++ Sbjct: 231 KGN--TTNNFAIYGQESNGDTWALSKMNCFLHTMD-------SAQIEWCDTINNPKLKEG 281 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 +F ++NPPF ++A +K RF G+P S G F++H+ Sbjct: 282 DALMKFDIVVANPPFSLDKWGHENAEADRYK-----RFLRGVPPKSKGDYAFILHMI--- 333 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G+ +++ LF G S E +IR+ L+E +L+EA++ LPT+LF+ T I Sbjct: 334 -ETTLPTGKVGVIVPHGVLFRG---SAEQKIRQKLIEENLLEAVIGLPTNLFYGTGIPAA 389 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + I + KT E + ++A+ + GKK+ ++ +I+ Y + + +S Sbjct: 390 ILIFNKAKTTE---DILFMDASKEFDD----GKKQNVLRTQDINKIVTTYKDFKTIEKYS 442 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 ++ + P + ++ + E KL ++ +++ M + Sbjct: 443 SVVKPAEVAENDFNLNIPRYVDTFEEEEPVDIAEVQQNIEKL----EAELVEVRSEMKKH 498 Query: 526 IYPYGW 531 + G+ Sbjct: 499 LKELGY 504 >gi|294339001|emb|CAZ87346.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp. 3As] gi|294341828|emb|CAZ90257.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp. 3As] Length = 521 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 106/540 (19%), Positives = 198/540 (36%), Gaps = 63/540 (11%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-----FG 63 L +W A+ L ++ ++L ++ + A + R ++ ++ + Sbjct: 3 QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKTQFNDPASDLYL 62 Query: 64 GSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 D + ++ Y F+ TL + ++ I + + Sbjct: 63 PDAADQAAALEERDYYTMANVFWVPEVARWETLRAQAKLWDIGIRIDQALDAIEADNPRL 122 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + + G + ++ S I T V+ +YE+ + +F S Sbjct: 123 KGILDKRYGRAQLE----PGKMGELVDLVSTIGFGTGTQAKDVLGEVYEYFLGQFASAEG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV + +L +YDP CG+GG + + G Sbjct: 179 KKGGQFYTPASVVKVLVEVLAPHQG-----------KVYDPCCGSGGMFVQSEKFIESHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE P T + + IR ++ + ++ + T +D + Sbjct: 228 GR---FGDISIYGQEANPTTWRLVAMNLAIRGMDFNLGKEPA------DTFHRDQHPDLK 278 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + R+ G P S+ + +L H+ L N Sbjct: 279 ADYVLANPPFNISDWGGD-------RLLDDKRWLYGTPNPSNANYAWLQHILWHL----N 327 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A +VL++ + + E IR+ ++E D++E +VALP LFF T I LW L+ Sbjct: 328 ANGQAGVVLANGSM--SSNQNNEGTIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFLT 385 Query: 412 NRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRM 467 KT +RRG+V I+A L R+ +D+ +I R++G+ Sbjct: 386 KSKTAHGRDRRGEVLFIDARKLGRMETRV---NRVFDDEDVARIAGTVHRWRQDGEAGAQ 442 Query: 468 LDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 Y G+ R +K+ +L EA + +L M + Sbjct: 443 EPYADVPGFCRAVKLAEIAEHGHVLTPGRYVGAEAVDDDDEAFNEKMERLTTLLAEQMAK 502 >gi|146295059|ref|YP_001185483.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] gi|145566749|gb|ABP77684.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] Length = 499 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 120/547 (21%), Positives = 212/547 (38%), Gaps = 66/547 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +W A + G +D+ I P +R+ + + G Sbjct: 5 NIKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYD---EEFIDAMEQVGDEE 61 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 + + E + + + L+ I + IF D ++ Sbjct: 62 LAKGDMF----HRIQIPQECHWKDVFAETKDIGQALKDAFRGIELANPKLHGIFGDASWT 117 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + +F+ + L +V D M YE+LI+RF + ++ A +F TPR Sbjct: 118 NK-ERLSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPR 175 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L +L P ++YDP CGTGG L + ++HV + G ++ Sbjct: 176 TIVRLMVNIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 GQE T A+ + + E +I +G TL + F + F ++ Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLVSDRLETFDCVIA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF K GR GL ++G ++ H+ L GR A Sbjct: 276 NPPFSLKEWGY-----DLWSADPYGRKQYGLAPKTNGDFAWVQHMFASLNEQ----GRMA 326 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL LF G A E IR LL+ + IEAI+ + ++LF+ T I + +L + + Sbjct: 327 VVLPHGVLFRGGA---EGAIRTKLLQENRIEAIIGVASNLFYGTGIPACILVLRKSRPAD 383 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 + V +INA +++T G+ + +++DQ I +IY +E T G + Sbjct: 384 HQDHVLIINAEEIFTK----GRAQNTLSNDQADDIFNIYRQQE-----------TLGPKA 428 Query: 478 IKVLRPLRMSFILD-KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ R + + + L +K + LK Q++ AE+ + Sbjct: 429 EEIEGVARWVALTEIEENDFNLNIARYVQKPLEEETITVEEALKDFQQKLAALEQAENEL 488 Query: 537 KESIKSN 543 + + Sbjct: 489 EALLVKE 495 >gi|85716902|ref|ZP_01047867.1| type I restriction system adenine methylase [Nitrobacter sp. Nb-311A] gi|85696282|gb|EAQ34175.1| type I restriction system adenine methylase [Nitrobacter sp. Nb-311A] Length = 513 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 117/555 (21%), Positives = 214/555 (38%), Gaps = 78/555 (14%) Query: 1 MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT + LA ++K A+ L G+ + +++ V L L+ + A E R VR Sbjct: 1 MTTASNGNGDLAFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEAQR--VRLT 58 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------SD 109 + + E A + F+ E S L + R + I ++ Sbjct: 59 TDQYADAEDPEEYL---AEHVFWVPKEARWSYLQANAKRPEIGKLIDEAMEAIEKAPSNE 115 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168 K + T+ + +L ++ FS I +H T ++ +YE+ + F Sbjct: 116 GLKGVLPKNYARPTLNK----TMLGELIDLFSNIGMHDSTDKAKDLLGRVYEYFLSGFAG 171 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +F TPR VV +L +YDP CG+GG + + Sbjct: 172 SEGKRGGEFFTPRSVVRTLVEML-----------EPYQGRVYDPCCGSGGMFVQSEKFIE 220 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDL 286 + G + +GQE+ T + + ++ +++D I+ + + +D Sbjct: 221 EHGGRRDA---IAVYGQEINHTTWRLAKMNLAVQGIDAD--------IRWNNEGSFHRDE 269 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 F + + L+NPPF + + E R+ G P S+ + +L H+ + L Sbjct: 270 FADLKADFILANPPFNISDWGGE-------RLSEDQRWKYGTPPKSNANFAWLQHILHHL 322 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G A +VL++ + SGE +IR+ ++E D+++A+VALP LFF T I Sbjct: 323 APR----GTAGVVLANGSM--SSQQSGEGDIRKAMIEADVVDAMVALPGQLFFSTQIPAC 376 Query: 407 LWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 LW+L+ K +RRG++ I+A L + RR + + +I D Y Sbjct: 377 LWVLARDKGANGHRDRRGEILFIDARKLGFMVDRV---RREFSAEDISRIADAYHRWRGK 433 Query: 463 KFSRMLDYRTFGYRRIK----------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 + G+ + VL P R D + + L Q Sbjct: 434 DHADAYA-DEPGFCKSATLAEVREHGHVLTPGRYVGAADAED-DGVPFAEKFEALREQLQ 491 Query: 513 SFWLDILKPMMQQIY 527 + + D + + ++I Sbjct: 492 ARF-DEGRALEERIA 505 >gi|25026813|ref|NP_736867.1| putative restriction enzyme subunit M [Corynebacterium efficiens YS-314] gi|259506125|ref|ZP_05749027.1| type I restriction-modification system, M subunit [Corynebacterium efficiens YS-314] gi|23492092|dbj|BAC17067.1| putative restriction enzyme subunit M [Corynebacterium efficiens YS-314] gi|259166299|gb|EEW50853.1| type I restriction-modification system, M subunit [Corynebacterium efficiens YS-314] Length = 800 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 98/475 (20%), Positives = 174/475 (36%), Gaps = 55/475 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L ++ A+ L G + + + + I L+ E + V + + G S Sbjct: 5 TLPQLERHLFAAADVLRGSMEASAYKEYIFGMLFLKYASDQFEAEQQQVIAEQRSRGRSQ 64 Query: 67 IDLESFVKVAGY--SFYNTSEYSLSTLGS---TNTRNNLESYIASF---SDNAKAIFEDF 118 + E + + +FY + + + L + + + + + Sbjct: 65 AEAEQRAESPSFYRAFYVPQRARWDQIRDHLHKSVGSGLNKALEELEHSNRSLDGVLQHI 124 Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAED 176 DF+ I + + L ++ +F+ + L + YE+LIR F + + Sbjct: 125 DFNRKIGQSSMSDKKLRELIMHFNKVPLRQQDFEFPDLLGAAYEYLIRDFADSAGKKGGE 184 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TPRDVV L + P ++YDP G+GG L + +V + G + Sbjct: 185 FYTPRDVVRLMVQI----------ADPRPGMSVYDPCTGSGGMLILSKEYVEESGGDGR- 233 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRF 292 L GQE + A+ ML+ + R+ TL +RF Sbjct: 234 --NLALAGQEKDGSVWAISKMNMLLHGIPDADLRNNDDG-----TLEDPAHIAGGELQRF 286 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLANKLELPP 350 ++NPPF + D RF G ++F+ H+ Sbjct: 287 DRVITNPPFSMNYSADAIP--------FSERFRYGYTPEKGKKADLMFVQHMLAVTRP-- 336 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG V+ LF G E +IR L +DL+EA++ L LF+ T I + +L Sbjct: 337 --GGLVTTVMPHGVLFRGG---DEGKIRTGFLNDDLLEAVIGLGPQLFYGTGIPACILVL 391 Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 K + R KV INA + EG+ + + + +I+ Y + E+ Sbjct: 392 RPLGSKPQHREDKVLFINADRDY----REGRAQNYLEPEHIEKIVSAYRAFEDVP 442 >gi|297587128|ref|ZP_06945773.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia magna ATCC 53516] gi|297575109|gb|EFH93828.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia magna ATCC 53516] Length = 500 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 108/532 (20%), Positives = 197/532 (37%), Gaps = 58/532 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M TG+ I++ A+ L G+ ++ V+L L+ + + E + + E+ Sbjct: 1 MDNITGANLGFEKEIFQAADKLRGNIDAAEYKNVVLGLIFLKYISDSFEQKYNQLLEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113 G + + +A F+ + S + I +D + Sbjct: 59 ---GDGFEEDRDEYIAENVFFVPKTARWEYVASKAMTAEIGKIIDEAMVAIEQENDRLRG 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L ++ F+ ++L ++ YE+ I +F S + Sbjct: 116 ILPKNYARPELDK----RRLGEVVDLFNNLKLKEHGNSKDILGRTYEYTIAQFASLEGKN 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP +V +L +YDP CG GG + V + Sbjct: 172 AGEFYTPTSIVKTLVEIL-----------EPYEGRVYDPCCGAGGMFVQSAKFVENHQGR 220 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQE T + + I LE D + T KD + + Sbjct: 221 INE---ISIYGQEYNTNTWKLAQMNLAIHGLEGDLGHGAA------DTFFKDQHSSLKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + L+NPPF K K E R+ G P + + ++ H+ L+ Sbjct: 272 FILANPPFNLKEWGGD-------KLSEDSRWKYGTPPQGNANYAWMQHMIYHLDDNT--- 321 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+ +VL++ L A E EIR ++++DL+E I+A+P LF+ T I+ LWIL+ Sbjct: 322 GKMGLVLANGSL---SASGKEGEIRENIIKDDLVECIIAMPDRLFYSTGISVSLWILNKN 378 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K + + K ++ +L I R ++++ +I Y + NGK L Y Sbjct: 379 KQQ--KNKTLFLDCRNLGHMIDRA---HRDLSEEDIAKITTTYKNFVNGKDIEELGYAHA 433 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 Y ++ L F+L LE + + LK + ++ Sbjct: 434 AYMD-EIETNL---FVLTPGRYVGLEEMDDDGEDFEDKMQRLTEELKDLFEE 481 >gi|328675904|gb|AEB28579.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Francisella cf. novicida 3523] Length = 495 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 114/540 (21%), Positives = 207/540 (38%), Gaps = 75/540 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W + G + IL ++ L + + + E+Y Sbjct: 4 TTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSERYNG---- 59 Query: 66 NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFE 116 D + + + F + L + + NL I + D + IF Sbjct: 60 --DEKRIERALSREKFTLDDSCTFDYLYANKDKENLGEIINAALDRIEEDNPQKLTGIFR 117 Query: 117 DFDFSS---TIARLEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEV 170 DF+ ++ +L + K+F+ +L+ + V+ + YE+LI F S+ Sbjct: 118 GVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLNLSPSKLEGNDVIGDSYEYLIANFASDS 177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP V L L+ + YDPTCG+G L A + Sbjct: 178 GKKGGEFFTPSQVSSLLAMLVQAKEGDEI----------YDPTCGSGSLLIKAAKEIGSN 227 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 +GQE TH++C M + + NIQ G T+ Sbjct: 228 N--------FAIYGQERNSTTHSLCRMNMFLHDIN-------DANIQLGDTIRNPRILEN 272 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 K+F ++NPPF + + RF G+P S G F+ H+ L Sbjct: 273 DKLKKFDVVVANPPFSLD-----KWGADDVTSDVYSRFEFGIPPKSKGDYAFIQHMLASL 327 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GR A+V+ LF G A E +IR+ +++N+L++A++ LP++LFF T+I Sbjct: 328 NES----GRMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPAC 380 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + + +K V I+A++ + GK + + DD ++I D Y SRE+ K+S Sbjct: 381 IMVFKKQKDS---NDVLFIDASNEFEK----GKNQNKLTDDNIKKIFDTYKSRESLEKYS 433 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + + P ++ ++ + T + ++ L + LK M + Sbjct: 434 HVAKLDEIKENDYNLNIP---RYVDTFEEEEPVDIEATKQTIAELEAK--REALKTKMAE 488 >gi|313112144|ref|ZP_07797925.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa 39016] gi|310884427|gb|EFQ43021.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa 39016] Length = 507 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 114/550 (20%), Positives = 202/550 (36%), Gaps = 62/550 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + + +W + G + IL L+ + + + R +Y Sbjct: 1 MSDK-VNQDDINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDSYRMEYG 59 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113 + E FV SFY + L S + K Sbjct: 60 DEPELIEEMLKNERFVLPRNASFYALYDRRYEPGNGERIDQALHSIEEANGTKLKDAGKS 119 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168 +F+D F+ +K +L + ++F+ EL V+ N YE+LI+ F + Sbjct: 120 VFQDISFNTDKLGEEKQKNTILRHLLEDFAREELDLKPSRVGSLDVIGNAYEYLIKNFAA 179 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L LL P ++ DP CG+ L V Sbjct: 180 SGGQKAGEFYTPPEVSELIAELL----------DPQPGDSICDPACGSASLLMKCGRKVR 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + +GQE T ++ M + + + I+ G TL Sbjct: 230 EHH----NSKQYALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTLRNPKLL 278 Query: 289 GK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 +F +NPPF E ++ + GRF G+P + G F++H+ Sbjct: 279 DTNGQLLKFDIVTANPPFSLD-----KWGHDEAEHDQFGRFKRGIPPKTKGDFAFILHMI 333 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ GR A+++ LF G S E +IR+ L+E +L++A++ LP LF+ T I Sbjct: 334 ETLKAKT---GRMAVIVPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPEKLFYGTGI 387 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + S KT+E V I+A+ + GK + ++ ++Q IL Y R N Sbjct: 388 PAAILVFSKAKTDE---NVLFIDASRDF----KSGKNQNVLGEEQINNILLTYRHRINSD 440 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 +S + + P R ++ L + RK ++ ++ M Sbjct: 441 KYSHRASLQEIRDNDYNLNIP-RYVDTFEEEKEVNL---MAVRKERAQLKAKLAELEIAM 496 Query: 523 MQQIYPYGWA 532 + G+ Sbjct: 497 DTYLRELGYD 506 >gi|229002235|dbj|BAH57701.1| type I restriction-modification system DNA methylase [Staphylococcus aureus] Length = 507 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 105/539 (19%), Positives = 195/539 (36%), Gaps = 62/539 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G ++ V L L+ + + E + K + E Sbjct: 12 KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQDEYL- 68 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126 A F+ E + + + I +++ K + + + Sbjct: 69 --AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK 126 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +YE+ I +F S + A +F TP +V L Sbjct: 127 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 182 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V H + +GQE Sbjct: 183 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 228 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +++D + T DL G + Y L+NPPF Sbjct: 229 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 282 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + R+ G+P + + ++ H+ +KL G A VL++ + Sbjct: 283 GQE-------RLLDDYRWQFGIPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 331 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422 E EIR+ L+E DL+E IV LP LF+ T I LW +SN K +ER ++ Sbjct: 332 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEI 389 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VL 481 I+A ++ + K +D+ +++ Y + D G+ ++ + Sbjct: 390 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHAWRGTNDKPYEDIA--GFCKVANLE 444 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL L + + I + +Q E +++S+ Sbjct: 445 EVKNNEYILTPGRYVGLAD---VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL 500 >gi|257465468|ref|ZP_05629839.1| type I restriction-modification system, M subunit [Actinobacillus minor 202] gi|257451128|gb|EEV25171.1| type I restriction-modification system, M subunit [Actinobacillus minor 202] Length = 503 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 98/484 (20%), Positives = 174/484 (35%), Gaps = 56/484 (11%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--- 60 + + + +W + G + IL L+ + + + +Y Sbjct: 1 MSINQDDINKALWSACDTFRGTISPDTYKDFILTMLFLKYISDVWQDHYQQYQAEYGDVP 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116 + E FV +FY E L + + K +F+ Sbjct: 61 ELIEEMMKQERFVLPPHANFYRLYEQRFEAGNGERIDQALHAIEEANGTKLKDAGKSVFQ 120 Query: 117 DFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171 D F+ +K +L ++ ++F+ EL ++ N YE+LI+ F + Sbjct: 121 DISFNTDKLGEEKQKNTILRELLEDFAKPELDLKPSKVGTLDIIGNAYEYLIKNFAASGG 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP +V L LL P M ++ DP CG+G L V Sbjct: 181 QKAGEFYTPPEVSDLIAELL----------DPQMGDSICDPACGSGSLLMKCGQKVVKNH 230 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290 +GQE T ++ M + + + I+ G T+ Sbjct: 231 QS----KNYALYGQEAIGSTWSLAKMNMFLHSED-------NHRIEWGDTIRNPKLLDSN 279 Query: 291 ----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 F +NPPF E RF GLP + G F+ H+ L Sbjct: 280 GELITFDIVTANPPFSLD-----KWGYDEVSQDRFQRFEHGLPPKTKGDYAFISHMIKTL 334 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + GR +V+ LF G A E +IR+ L++ +L++A++ LP LF+ T I Sbjct: 335 KEKT---GRMGVVVPHGVLFRGAA---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPAA 388 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + I KT+ V I+A++ + GK + + + +I+ Y +R+ + Sbjct: 389 ILIFRKNKTD---DTVLFIDASNEF----KPGKNQNTLTVENIEKIVRTYRTRQAVEKYA 441 Query: 467 MLDY 470 + Sbjct: 442 FVAT 445 >gi|238768521|dbj|BAH66833.1| type I restriction-modification system DNA methylase [Staphylococcus aureus] Length = 504 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 105/539 (19%), Positives = 195/539 (36%), Gaps = 62/539 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G ++ V L L+ + + E + K + E Sbjct: 9 KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQDEYL- 65 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126 A F+ E + + + I +++ K + + + Sbjct: 66 --AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +YE+ I +F S + A +F TP +V L Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V H + +GQE Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +++D + T DL G + Y L+NPPF Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + R+ G+P + + ++ H+ +KL G A VL++ + Sbjct: 280 GQE-------RLLDDYRWQFGIPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422 E EIR+ L+E DL+E IV LP LF+ T I LW +SN K +ER ++ Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEI 386 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VL 481 I+A ++ + K +D+ +++ Y + D G+ ++ + Sbjct: 387 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHAWRGTNDKPYEDIA--GFCKVANLE 441 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +IL L + + I + +Q E +++S+ Sbjct: 442 EVKNNEYILTPGRYVGLAD---VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL 497 >gi|297545264|ref|YP_003677566.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843039|gb|ADH61555.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 514 Score = 320 bits (821), Expect = 5e-85, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 209/563 (37%), Gaps = 73/563 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + A+ +W A+ L + + +++ ++L L+ + A + + + Sbjct: 1 MGQNNDGVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRKEELEYLIK 60 Query: 61 AFGGSN-----------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 I + +A FY E + + R+++ I Sbjct: 61 DPKSEEYYCETNEEAQLILEDKDEYMAANVFYVPPEARYEYIMANARRSDIGKLID---- 116 Query: 110 NAKAIFEDFD---FSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 NA + E + + ++ L +I I V+ +YE+ Sbjct: 117 NAMDLIEKENPKQLRGVLPKVYTRAPLDPHTLGEIVTLIGSINFG-KNEELDVLGRVYEY 175 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + F + + +F TP VV L ++ + ++DP CG+GG Sbjct: 176 FLSEFARKEGKRGGEFFTPSTVVKLLVEMI-----------QPLHGRVFDPCCGSGGMFV 224 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++ V + +GQE P T+ +C + IR +E+D I+ G++ Sbjct: 225 QSIRFVEAH---AGKKGDISIYGQESNPTTYRLCKMNLAIRGIEAD--------IRLGNS 273 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 + D F R Y L+NPPF + R+ GLP S+ + ++ H Sbjct: 274 FTDDQFKDLRADYILANPPFNDSAWGAD-------RLANDVRWKYGLPPDSNANYAWIQH 326 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L G A VL++ + + E EIR+ ++E++L++ +VALP LF+ T Sbjct: 327 FIYHLAPK----GVAGFVLANGSMTTSN--NAEYEIRKRIIEDNLVDCMVALPPQLFYTT 380 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 I LW + + + + I+A + + R + D++ ++I Y + N Sbjct: 381 GIPACLWFIRKGRETK---ETLFIDARKIGVMVDRT---HRELTDEEIQKIAQTYHNWRN 434 Query: 462 GKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 + G+ + + + ++L +E R+ + ++ + Sbjct: 435 KNGYEDV----KGFCASVPMEVIAQNDYVLAPGRYVGVEDT---REDDIPFEEKMAELTE 487 Query: 521 PMMQQIYPYGWAESFVKESIKSN 543 + QQ+ + +K +++ Sbjct: 488 KLYQQMKEAKRLDEVIKANLEEL 510 >gi|312136020|ref|YP_004003358.1| Site-specific DNA-methyltransferase (adenine-specific) [Caldicellulosiruptor owensensis OL] gi|311776071|gb|ADQ05558.1| Site-specific DNA-methyltransferase (adenine-specific) [Caldicellulosiruptor owensensis OL] Length = 514 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 102/562 (18%), Positives = 214/562 (38%), Gaps = 71/562 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56 M + + A+ +W A+ L + + +++ ++L L+ + A + + + Sbjct: 1 MGQNNDGVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRQEELEYLIK 60 Query: 57 ----EKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 E+Y I + +A FY E + + R+++ I Sbjct: 61 DPKNEEYYCGSEEEAQLILEDKDEYMAANVFYVPPEARYEYIMANARRSDIGKLID---- 116 Query: 110 NAKAIFEDFD---FSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 +A + E + + ++ L +I I V+ +YE+ Sbjct: 117 DAMDLIEKENPKQLRGVLPKVYTKAPLDPHTLGEIVNLIGSINFG-KNEELDVLGRVYEY 175 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + F + + +F TP VV L ++ + ++DP CG+GG Sbjct: 176 FLSEFARKEGKRGGEFFTPSSVVKLLVEMI-----------QPLHGRVFDPCCGSGGMFV 224 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++ V + +GQE P T+ +C + IR +E+D I+ G++ Sbjct: 225 QSIRFVEAH---AGKKGDISIYGQESNPTTYRLCKMNLAIRGIEAD--------IRLGNS 273 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 + D F R Y L+NPPF + R+ GLP S+ + ++ H Sbjct: 274 FTDDQFKDLRADYILANPPFNDSAWGAD-------RLANDVRWKYGLPPDSNANYAWIQH 326 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L G A VL++ + + E EIR+ ++E++L++ +VALP LF+ T Sbjct: 327 FIYHLAPK----GVAGFVLANGSMTTSN--NAEYEIRKRIIEDNLVDCMVALPPQLFYTT 380 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 I LW + + + + I+A + + R + D++ ++I + Y + N Sbjct: 381 GIPACLWFIRKGRETK---ETLFIDARKMGVMVDRT---HRELTDEEIQKIAETYHNWRN 434 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 S D + F + + + ++L +E ++ + ++ + Sbjct: 435 K--SGYEDLKGFC-ASVPMEVIAQNDYVLAPGRYVGVEDT---QEDDIPFEEKMAELTEK 488 Query: 522 MMQQIYPYGWAESFVKESIKSN 543 + QQ+ + +K +++ Sbjct: 489 LYQQMKEARRLDEIIKANLEEL 510 >gi|302528797|ref|ZP_07281139.1| type I restriction-modification system, M subunit [Streptomyces sp. AA4] gi|302437692|gb|EFL09508.1| type I restriction-modification system, M subunit [Streptomyces sp. AA4] Length = 541 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 99/483 (20%), Positives = 172/483 (35%), Gaps = 70/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYL 60 + L + +WK A+ L G + VIL L+ + A + R A+R E Y Sbjct: 13 STMKELKDTLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAYDERREAIRADLTAEGYD 72 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---------TNTRNNLESYIASF---- 107 A +++ + F L T N+ I Sbjct: 73 AEQIADLIDDPEEYQGYGVFVVPPTAQWDYLAQYAKGKPAEGTEPAKNIGQLIDEAMDLV 132 Query: 108 ---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162 + + I + L ++ F+ + +M +YE+ Sbjct: 133 MKTNPALQGTLPRLYNKDNIDQ----RRLGELIDLFNSARFSRQGEHRARDLMGEVYEYF 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + F + +F TP VV + +L +YDP CG+GG Sbjct: 189 LGNFARSEGKRGGEFFTPPSVVRVIVEVL-----------EPSSGRVYDPCCGSGGMFVQ 237 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + P + GQE ET + + I +E+ + G T Sbjct: 238 TEKFIYEHNGD---PKDVSIFGQESLEETWRMAKMNLAIHGIENKGLGA-----RWGDTF 289 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 ++D + Y ++NPPF K+ +N E R+ G+P ++ + ++ H+ Sbjct: 290 ARDQHADLQMDYVMANPPFNIKYWS---------RNTEDPRWKFGVPPATNANYAWIQHI 340 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 KL + G A + S N GE IR ++E DL+ +VALPT LF T Sbjct: 341 LYKLAPGGSAGVVMA---NGSMSSNSN---GEGAIRAQIVEADLVSCMVALPTQLFRSTG 394 Query: 403 IATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 I +W + K +R G+V I+A +L + R ++++ +I D Y Sbjct: 395 IPVCVWFFAKDKRAGKHGAVDRSGQVLFIDARELGYMVDRAE---RTLSNEDIAKIADTY 451 Query: 457 VSR 459 + Sbjct: 452 HAW 454 >gi|51893048|ref|YP_075739.1| type I restriction-modification system DNA methylase [Symbiobacterium thermophilum IAM 14863] gi|51856737|dbj|BAD40895.1| type I restriction-modification system DNA methylase [Symbiobacterium thermophilum IAM 14863] Length = 537 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 103/539 (19%), Positives = 190/539 (35%), Gaps = 61/539 (11%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA------F 62 + +W A+ L ++ ++L L+ + + R +R+ Sbjct: 19 NEMKRTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDSFVAQRERLRKVLADPASDLYL 78 Query: 63 GGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + + F+ + T+ + + ++ + I + + E+ Sbjct: 79 DDPADREAALEEREYYTMDNVFWVPDQARWETIRAHAKQPDIGARIDQALEAIEE--ENP 136 Query: 119 DFSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + + + G L ++ S I + V+ +YE+ + +F S + Sbjct: 137 RLKGLLDKRYGRAHLEPGRLGELVDLISTIGFGEEHRARDVLGEVYEYFLGQFASAEGKK 196 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP VV L A+L +YDP CG+GG A + G Sbjct: 197 GGQFYTPASVVKLLVAILAPYKG-----------KVYDPCCGSGGMFVQAERFLESRGGR 245 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 L +GQE P T + + IR L+ + ++ + T ++ R Sbjct: 246 ---FGDLSIYGQEANPTTWRLVAMNLTIRGLDFNLGKEPA------DTFHRNQHPDLRAD 296 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF + + + R+ G P + + +L H+ L G Sbjct: 297 YILANPPFNMSDWGGE-------RLVDDPRWIYGTPPAGNANFAWLQHILWHLAPAGQAG 349 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 A + S + E EIR+ ++E D++E +VALP LFF T I LW L Sbjct: 350 VVLA---NGSM---SSQQNNEGEIRKNMVEADVVEVMVALPPQLFFNTQIPACLWFLCKD 403 Query: 414 KTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV----SRENGKFSR 466 KT+ +RRG+V I+A + R+++D++ +I + RE Sbjct: 404 KTKNGRDRRGEVLFIDARKMGRMETRV---NRVLDDEEIAKIANTVHLWRQDREAPPGQV 460 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 D F R +K+ ++L E + L M++ Sbjct: 461 YEDVPGFC-RAVKLEEIAANGYVLTPGRYVGAEEVEDDDETFAEKMERLTAELAEQMKK 518 >gi|148982142|ref|ZP_01816609.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3] gi|145960647|gb|EDK25994.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3] Length = 510 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 112/550 (20%), Positives = 203/550 (36%), Gaps = 61/550 (11%) Query: 1 MTEFTGSAASLAN-----FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + L +W + G + + IL L+ + + + Sbjct: 1 MPHTKINQDPLYQEQVNKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKFDEL 60 Query: 56 REKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 +++ + + +SF G +F++ E + L + + K Sbjct: 61 SKQFNGNEQMITAMMSKQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLK 120 Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNF--SGIELHPDTV-PDRVMSNIYEHLIRRFG 167 +F+D F+ +K +L + ++F + L P V V+ N YE+LI+ F Sbjct: 121 NVFQDISFNTDKLGDEKQKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFA 180 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + A +F TP +V L + +L P ++ DP CG+G L V Sbjct: 181 AGSGKSAGEFYTPPEVSDLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQV 230 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + S K GQE T ++ M + + + I+ G T+ Sbjct: 231 QNNFSGSK---QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKL 280 Query: 288 TGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 K F +NPPF +DA GRF G+P + G F+ H+ Sbjct: 281 QDKEGGLLHFDVVTANPPFSLDKWGFEDAGNDHF-----GRFRRGIPPKTKGDYAFISHM 335 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L+ GR +V+ LF S E +IR+ L++ +L++ ++ LP LFF T Sbjct: 336 IETLKPES---GRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFGTG 389 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 I + I +K + KV I+A+ + GK + + + R+I+D Y +RE Sbjct: 390 IPAAILIFKKQKDD---NKVLFIDASREF----KSGKNQNQLTPENIRKIVDTYKARETT 442 Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 +S + + P + ++ + T R Q+ D+ Sbjct: 443 DKYSYLASLEEVAENDYNLNIPRYVDTFEEEEEIDLA----TVRNERLALQNKLADLEGE 498 Query: 522 MMQQIYPYGW 531 M + G+ Sbjct: 499 MAGYLEELGY 508 >gi|296270473|ref|YP_003653105.1| site-specific DNA-methyltransferase [Thermobispora bispora DSM 43833] gi|296093260|gb|ADG89212.1| Site-specific DNA-methyltransferase (adenine- specific) [Thermobispora bispora DSM 43833] Length = 540 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 103/472 (21%), Positives = 175/472 (37%), Gaps = 57/472 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + A L + +WK A+ L G + +L L+ + A E R A+RE+ L G Sbjct: 19 TMADLRDTLWKAADKLRGSMDAAQYKDFVLGLVFLKYVSDAFEERREAIREEILEQGIPE 78 Query: 67 IDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 L+ F+ F+ E S L + + I D + + Sbjct: 79 SRLDMFLDDKDEYIGHGVFWVPEEARWSHLAAHAKSEGIGELIDRAMDAIMK--SNQSLA 136 Query: 122 STIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + ++ L ++ H D V+ +YE+ + +F + Sbjct: 137 GVLPKIFNRDNVDQRRLGELVDLIGDARFTGHGDRPARDVLGEVYEYFLEKFARAEGKRG 196 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP VV L +L +YDP CG+GG A V Sbjct: 197 GEFYTPASVVKLLVEVL-----------EPYAGRVYDPCCGSGGMFVQAEKFVIAHRG-I 244 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + + +GQE T + + I + + + T +D + + Sbjct: 245 QHKDDIAVYGQESNERTWRLAKMNLAIHGISGNLGP------RWADTFREDKHPDLKADF 298 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPF + + R+ G P ++ + +L H+ +KL G Sbjct: 299 VLANPPFNMS---------DWSRQVDDPRWRFGTPPANNANFAWLQHIISKLAER----G 345 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 A +VL++ + SGE EIR ++E DL+ +VALP LF T I LW K Sbjct: 346 TAGVVLANGSM--SSKQSGEGEIRAAIVEADLVSCMVALPPQLFRTTQIPACLWFFDKDK 403 Query: 415 T-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + +RRG+V I+A ++ T + R++ D +I D Y + Sbjct: 404 SPQGAKRLADRRGEVLFIDARNMGTMVDRTE---RVLTADDIARIADTYHAW 452 >gi|126434842|ref|YP_001070533.1| N-6 DNA methylase [Mycobacterium sp. JLS] gi|126234642|gb|ABN98042.1| N-6 DNA methylase [Mycobacterium sp. JLS] Length = 316 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 160/296 (54%), Gaps = 15/296 (5%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 AN IWK AE L G ++ +G VILPFT+LRRL+C LEPT+ V +Y + +D Sbjct: 6 ANLIWKIAELLRGPYQPNQYGDVILPFTILRRLDCILEPTKDEVLAEYAKISATKVDPAV 65 Query: 72 FVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128 +K FYNTS ++ + L +NL YI FS N + +F+ F IA L Sbjct: 66 MLKAKFKLPFYNTSRWTFAALVGDPEGVADNLIDYIERFSPNVRDVFDGFKMVDLIADLA 125 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 K+ LY I K F+ ++LHP+ V + M I+E LIR+F + A D TPR+V+ L Sbjct: 126 KSDRLYLIVKEFAAVDLHPNVVTNHDMGYIFEELIRKFAESNNAQAGDHFTPREVIALMV 185 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L D PG +RT+YDP GTGG L+ A +H+ + + V +GQ++ Sbjct: 186 DILFHAQDDALT-KPGTVRTIYDPAAGTGGMLSTAHDHLIEMNPKAR----PVLYGQDIN 240 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 P ++A+C + M+++ + D NI G TL+ D F K F + LSNPPF K Sbjct: 241 PRSYAMCKSDMIVKGQDVD-------NIYLGDTLTDDGFRTKTFDFLLSNPPFRKM 289 >gi|118580277|ref|YP_901527.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379] gi|118502987|gb|ABK99469.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379] Length = 540 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 93/476 (19%), Positives = 179/476 (37%), Gaps = 62/476 (13%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGG 64 L +W A+ L + ++ ++L ++ + + S +RE++ + Sbjct: 4 ELIKTLWATADKLRANMDAAEYKHIVLGLIFVKYISDTFQTRSSELRERFGNPDDEYYIQ 63 Query: 65 SNIDLESFVKVAG-------YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN 110 D ++ +F+ + + + ++ I + + Sbjct: 64 DADDETLVCELEDRDYYREVNTFWVPEAARWENIRAQAKQPDIGKRIDDALTLIEAENPK 123 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169 K I + + G L ++ S I ++ +YE+ + +F S Sbjct: 124 LKGILDKRYARVQLPD----GKLGELVDMVSTIGFGVTGESARDILGQVYEYFLGQFASA 179 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + F TP +V A+L +YDP CG+GG + + Sbjct: 180 EGKRGGQFYTPASIVRTLVAILAPHHG-----------QVYDPCCGSGGMFVQSEKFIEA 228 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 G + +GQE P T + + IR ++ + ++ + T ++ Sbjct: 229 HGGRIG---DVSIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA------DTFVRNQHPD 279 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 R + L+NPPF R+ G P + + +L H+ L+ Sbjct: 280 LRADFVLANPPFNVS-------DWWHPSLEGDPRWEYGTPPQGNANYAWLQHMLYHLKPT 332 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GRA IVL++ + + + E EIRR L+E D +E +VA+P LFF T I LW Sbjct: 333 ----GRAGIVLANGSMSSS--QNSEGEIRRALVEADKVEVMVAMPGQLFFNTQIPACLWF 386 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKF 464 L+ +K+ +G+V I+A L T I + +D+ ++I D + +G+ Sbjct: 387 LAKQKSVR-QGEVLFIDARKLGTMISRV---QIEFSDEDIQRIADTVHAWRGDGEI 438 >gi|70725065|ref|YP_251979.1| type I restriction-modification system DNA methylase [Staphylococcus haemolyticus JCSC1435] gi|68445789|dbj|BAE03373.1| type I restriction-modification system DNA methylase [Staphylococcus haemolyticus JCSC1435] Length = 504 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 104/532 (19%), Positives = 190/532 (35%), Gaps = 63/532 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G ++ V L L+ + + E + K + E Sbjct: 9 KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYKEL--KQDPYADEEDQDEYL- 65 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIAR 126 A F+ E + + + I +++ K + + + Sbjct: 66 --AENIFWVPKEARWQYINDNAKKPEIGQLIDKAMIAIEKENESLKGVLPKEYARPALDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +YE+ I +F S + A +F TP +V L Sbjct: 124 ----EKLGDIIDLFTFKLGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG + V H + +GQE Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + + IR +++D + T DL G + Y L+NPPF Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + R+ G+P + + ++ H+ +KL G A VL++ + Sbjct: 280 GQE-------RLLDDYRWQFGVPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422 E EIR+ L+E DL+E IV LP LF+ T I LW +SN K +ER+ ++ Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERKNEI 386 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYRRIK- 479 I+A ++ + K +D+ +++ Y S N K+ + G+ ++ Sbjct: 387 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHSWRGTNDKYYEDIA----GFCKVVN 439 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + +IL L + L + Sbjct: 440 LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMKRITSELSEQFAKSKELED 491 >gi|258517330|ref|YP_003193552.1| type I restriction-modification system, M subunit [Desulfotomaculum acetoxidans DSM 771] gi|257781035|gb|ACV64929.1| type I restriction-modification system, M subunit [Desulfotomaculum acetoxidans DSM 771] Length = 527 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 99/495 (20%), Positives = 181/495 (36%), Gaps = 72/495 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + IW+ A G ++ ILP ++ L + + +KY Sbjct: 1 MATTRKDIEAAIWRGANTFRGAIDAANYKDYILPMLFVKYLSDSYLEKVEKLEQKY---- 56 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IF 115 N + + + F ++ S L +NL I + +F Sbjct: 57 --NDPVRAERAINRLPFAIKEKHRFSWLYQNRYNDNLGELINIALRGIEDDNPSLFTGVF 114 Query: 116 EDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHLIRR 165 + DF+S +K L ++ ++F ++L P + + + YE++I Sbjct: 115 RNIDFNSEAMLGNHNQKNTRLRELLEDFEPLDLRPSAIEPEEGKVAADTIGDAYEYMIGE 174 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + A F TP +V L ++ +P + T+YDPTCG+G L Sbjct: 175 FARQAGKKAGSFFTPSEVSELIARIV----------NPKISDTMYDPTCGSGSLLIRTGK 224 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + L +GQE+ + ++ M + + + I G +L+ Sbjct: 225 --KAIEKENGNIKTLALYGQEMNGSSWSMAKMNMFLHEI-------MDARIAWGDSLANP 275 Query: 286 LFTG-----KRFHYCLSNPPFGKK-----------WEKDKDAVEKEHKNGELGRFGPGLP 329 + +F ++N PF + + E + RF G+P Sbjct: 276 MHLDPDGNLMQFDVIVANMPFSQDKWAAGFNTGGEMTGKGKQFKMEASLDKFHRFDWGVP 335 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S G FL+H+ L+ GGR A V LF G E IR+ ++E +L++A Sbjct: 336 PASKGDWAFLLHMIASLKS----GGRIAAVAPHGVLFRGA---SEGRIRQAVIERNLLDA 388 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKR-RIIND 446 ++ LP +LF+ T I + + R V I+A+ D +R K + Sbjct: 389 VIGLPANLFYGTGIPACILVFKKN---RNRNDVLFIDASGKDEKGHLRYRKDKNQNRLET 445 Query: 447 DQRRQILDIYVSREN 461 I+ Y +R + Sbjct: 446 KHIEDIVKAYETRSD 460 >gi|299065074|emb|CBJ36237.1| Type I restriction-modification system methylation subunit [Ralstonia solanacearum CMR15] Length = 536 Score = 320 bits (820), Expect = 6e-85, Method: Composition-based stats. Identities = 109/492 (22%), Positives = 192/492 (39%), Gaps = 71/492 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + +L +++W++A L G +DF I L+R E V + Sbjct: 3 NKLTLDTLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEER---VSQLMANED 59 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-----IFEDF 118 S + ++ V +F T+ + T + N L+ K + Sbjct: 60 LSQAEADAEVCEDQGAFPPTARWGWLTTRTENIGEALDKAFHDIEAGVKGTDLQHVLTAT 119 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + R+ L ++ ++F+ +L D ++ + YE+LI++F + + +F Sbjct: 120 QYGDK--RVLSDHTLQRLLRHFNQYKLGNADLYKADMLGDAYEYLIKQFADDAGKKGGEF 177 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP+ VV L LL P ++YDPTCG+GG L ++ +H+A + Sbjct: 178 YTPKGVVQLVVGLL----------DPQPGMSVYDPTCGSGGMLVESAHHIAGLPGGTLLG 227 Query: 238 PILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291 +GQE T A+ + + + ++ I++G TL + K Sbjct: 228 GKPNVLLYGQEKNLGTWAIAKLNLYLHNMRAE--------IERGDTLVEPKHLDGDYLKT 279 Query: 292 FHYCLSNPPFGKKWE-------------KDKDAVEKEHKN--GELGRFGPGLPKISDGSM 336 F ++NPPF K +K +K GRFG G P + Sbjct: 280 FDRVIANPPFSAKAWWAPLELAAEAEQEGEKKPKAPNYKQVSDPYGRFGYGFPPRGYADL 339 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------ENDL 386 F H+ L+ GR ++L LF E +IR LL DL Sbjct: 340 AFAQHMLASLKAD----GRMGVILPHGVLFRSGE---EGKIRDGLLFGTDAASGQQPGDL 392 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 IEAI+ LP+ LF+ T I + +L+ K +GKV +I+A+ + GK + ++ Sbjct: 393 IEAIIGLPSALFYNTGIPACVLVLNKNKPATLKGKVIIIDASRDYLE----GKAQNMLRP 448 Query: 447 DQRRQILDIYVS 458 +I+ + + Sbjct: 449 GDITRIVARHKA 460 >gi|229822392|ref|YP_002883918.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333] gi|229568305|gb|ACQ82156.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333] Length = 541 Score = 319 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 93/484 (19%), Positives = 172/484 (35%), Gaps = 71/484 (14%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + L + +WK A+ L G + + VIL L+ + A + R+ + + A G Sbjct: 15 ATTMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRAVIAAELAADGI 74 Query: 65 SNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLES----------------Y 103 ++ F+ L Sbjct: 75 GEEQAGPLLEEVDEYRAAGVFWVPPRARWGYLAQHAKGRPAGDPEGQATIGELVDEAMVL 134 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEH 161 I + F+ L ++ F+ D V+ +YE+ Sbjct: 135 IMGTNPALATTLPQI-FNKEN---VDQRRLGELIDLFNSARFTGDGARKARDVLGEVYEY 190 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + +F + + +F TP L + +YDP CG+GG Sbjct: 191 FLGKFAAAEGKRGGEFYTPP-----------GVVRVLVEVLEPYRGRVYDPCCGSGGMFV 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + G P + +GQEL T + + + L + + G T Sbjct: 240 QAEKFIERHGED---PQAISVYGQELNERTWRMAKMNLAVHGLTAQLGP------RWGDT 290 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 ++D+ + + ++NPPF ++ +N E R+ G+P + + ++ H Sbjct: 291 FARDVHPDVQMDFVMANPPFN---------IKDWARNAEDARWKFGVPPAGNANYAWIQH 341 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + +KL GG A +V+++ + + GE EIR L+E DL+ +VALPT LF T Sbjct: 342 ILSKLAP----GGSAGVVMANGSMSSNSV--GEGEIRAALVEVDLVSCMVALPTQLFRST 395 Query: 402 NIATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 I +W + K +R G+V I+A +L + R ++D+ +I Sbjct: 396 GIPVCVWFFAKSKAAGASGSVDRTGQVLFIDARNLGHMVTRAE---RELSDEDIARIAGT 452 Query: 456 YVSR 459 + + Sbjct: 453 FHAW 456 >gi|326201154|ref|ZP_08191026.1| type I restriction-modification system, M subunit [Clostridium papyrosolvens DSM 2782] gi|325988722|gb|EGD49546.1| type I restriction-modification system, M subunit [Clostridium papyrosolvens DSM 2782] Length = 507 Score = 319 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 114/477 (23%), Positives = 200/477 (41%), Gaps = 52/477 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + L +WK A+ L G+ + I L+R+ + R ++++L Sbjct: 1 MIMAKLTLQELEANLWKAADILRGELNAAQYKDYIFDLLFLKRMNDEFQTERETKKQEFL 60 Query: 61 AFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAK---- 112 G +++ ++ SF+ L + N L+ + D K Sbjct: 61 KQGMPAEEVDELLEDPQVYVSFFVPERARWDNLKNLNLNIGPELDKAFKAIEDEPKNVEL 120 Query: 113 -AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEV 170 + +F+ R+ L ++ F ++L D + M + Y++LI+ F E Sbjct: 121 IGVLTTTNFNDK-ERVSDKK-LSQLLLLFDTMQLDADNLESSDMLGDAYQYLIKEFADEG 178 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +F TP +VV + +L P +YDPT G+GG L ++ +V D Sbjct: 179 GAKGGEFYTPSEVVQVLVNIL----------KPQEGDRIYDPTVGSGGMLIKSIEYVRDH 228 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 G + P L GQE+ T A+C M+ + +I++G T+ + Sbjct: 229 GGN---PRNLSLFGQEINLSTWAICKMNMIFHNAKG-------ADIRKGDTIRNPMHLEG 278 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 K F L+NPPF K + E RF G+P S G + F+ H+ L Sbjct: 279 GVLKTFDKVLANPPFSLKNWGHE-----EAMADPYHRFVYGVPPQSYGDLAFVSHMVASL 333 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 N G+ V+ LF A E +IR+ ++DLIEAIV LP++ F+ +I Sbjct: 334 ----NAKGKMGTVVPHGVLFRSGA---EGKIRKGFAKDDLIEAIVGLPSNCFYGASIPAA 386 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 L I++ K++ER+GK+ I+A+ + G K R + D+ + I + + ++ + Sbjct: 387 LMIINKNKSKERKGKILFIDASQGFV---KNGNKNR-LRDEDIKAITQAFDAFDDQE 439 >gi|87309189|ref|ZP_01091326.1| putative type I restriction-modification system, M subunit [Blastopirellula marina DSM 3645] gi|87288180|gb|EAQ80077.1| putative type I restriction-modification system, M subunit [Blastopirellula marina DSM 3645] Length = 543 Score = 319 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 99/478 (20%), Positives = 189/478 (39%), Gaps = 59/478 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + + S +W A+ L G + +++ V+L L+ + + R+A+ + A Sbjct: 20 NKESKAKKSFEQTLWDTADKLRGTVESSEYKHVVLSLIFLKFVSDRFQQRRAALIAEGKA 79 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 ++ FY ST+ + ++ +I S + + K Sbjct: 80 DYVDMVE----FYTMQNVFYLPENSRWSTIVKQAKQADIAVHIDSALHAVEKNNPSLKGA 135 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 D FS + K L N S + + ++ +YE+ + +F + +G Sbjct: 136 LPDNYFSRMGIDVAKLAALIDSINNLSTVADQAAESEEDIVGRVYEYFLGKFAATEGKGG 195 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ VV+L +L +YDP CG+GG ++ + + Sbjct: 196 GEFYTPKCVVNLLAEML-----------EPYSGKIYDPCCGSGGMFVQSVKFITSHHGNQ 244 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 K + +GQE T+ + + IR + + + T KD + Y Sbjct: 245 K---DISIYGQEQTSTTYKLAKMNLAIRGIAGNLGEVPA------DTFFKDQHPDLKADY 295 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPF K + D + + R+ G +P + + +++H+ +KL + Sbjct: 296 ILANPPFNLKAWRGPD------ELTDDPRWSGYDVPPAGNANYGWILHMISKL----SEN 345 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G A VL++ + SGE IR+ ++ENDL++ ++ALP LF+ T I LW L+ Sbjct: 346 GVAGFVLANGSMSTS--TSGEGAIRQKIIENDLVDCMIALPGQLFYTTQIPVCLWFLTKS 403 Query: 414 KTE------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 K +R G+ I+A + T + K + + +I Y + Sbjct: 404 KQARKVQGHSELNQRKRSGETLFIDARNHGTMVDRTHK---ELTETDIAEITQTYHAW 458 >gi|269103361|ref|ZP_06156058.1| type I restriction-modification system M subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268163259|gb|EEZ41755.1| type I restriction-modification system M subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 889 Score = 319 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 96/473 (20%), Positives = 190/473 (40%), Gaps = 56/473 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65 + L++ ++K + L G +++ + I L+R+ + ++ + E Sbjct: 5 TLNKLSSKLFKACDILRGKMDASEYKEYIFGILFLKRMSDQFHKDYQAKISELKKEGHDD 64 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN-----AKAIFEDF 118 + + F+ + L TN + L + + ++ + + + Sbjct: 65 DEIELLLEDEEQFDFFVPEKARWENLKHLKTNVGSGLNKALEALEESNTKKGLEGVLKHI 124 Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAED 176 +F+ + + L + ++F I L + YE+LI+ F + + Sbjct: 125 NFNRKVGKKPIPDERLVEFIQHFDSIPLSNSDFEFPDLLGAAYEYLIKYFADSAGKKGGE 184 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +VV L +L P +YDPTCG+GG L + N+V + G + K Sbjct: 185 FYTPAEVVRLLVEIL----------EPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKK 234 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKR 291 + GQE T ++C M++ +I+ G TL+ L + Sbjct: 235 ---IHLFGQEDNGGTWSICKMNMILHG-------TGGADIENGDTLATPLHRTKDGEVRP 284 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPP 350 F ++NPPF + ++K +++ RF +P+ ++F+ H+ L+ Sbjct: 285 FDRVIANPPFSQNYKKADMQLKE--------RFNTFMPESGKKADLMFVQHMVASLK--- 333 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+AA+V+ LF G E R+ +E ++EA++ LP LF+ T I + +L Sbjct: 334 -ANGKAAVVMPHGVLFRGAE---ERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVL 389 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + ++R V INA + EGK + + + +I +Y + Sbjct: 390 NKA-GCKKRDSVLYINADREY----REGKNQNSLRPEDIEKITSVYKVMLEDE 437 >gi|239906157|ref|YP_002952896.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1] gi|239796021|dbj|BAH75010.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1] Length = 531 Score = 319 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 103/471 (21%), Positives = 193/471 (40%), Gaps = 59/471 (12%) Query: 3 EFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 + G+ A+L ++K A+ L G+ + +D+ V L L+ + + E +A+ + Sbjct: 23 KSNGTGANLGFEGELFKAADKLRGNMEPSDYKHVALGLIFLKHISDSFEAKHAALTAE-- 80 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113 + + +A F+ E S L + + + I + +++ K Sbjct: 81 ---DPSCAEDPDEYLAENIFWVPKEARWSHLQANAKQPGIGKIVDDALVAIEAKNESLKG 137 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + ++ +L ++ SGI V+ +YE+ + +F + Sbjct: 138 VLPKDYARPALNKV----MLGELIDLISGIGLGTEQGQSRDVLGRVYEYFLSQFAGSEGK 193 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TPR VV + +L +YDP CG+GG + VA+ G Sbjct: 194 RGGEFYTPRSVVRVLVDML-----------EPFKGRVYDPCCGSGGMFVQSNKFVAEHGG 242 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + +GQE T +C + +R ++SD R + + KD R Sbjct: 243 RLG---DIAIYGQESNYTTWRLCKMNLAVRGIDSDIRWNSEG------SFHKDELKDLRA 293 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + + E R+ G+P + + +L H+ + L Sbjct: 294 DFILANPPFNISDWGGE-------RLREDVRWSFGIPPAGNANFAWLQHIFHHLGP---- 342 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G A +VL++ + + SGE +IR+ +LE D+++ ++ALP LF+ T I LW L+ Sbjct: 343 NGTAGVVLANGSMSSS--QSGEGDIRKAMLEADVVDCMIALPGQLFYSTQIPACLWFLAR 400 Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 K +RRG+V I+A L + RR + + +I Y + Sbjct: 401 DKANHGFRDRRGEVLFIDARKLGHLVDRT---RREFSAEDIAKIAGTYHAW 448 >gi|326314830|ref|YP_004232502.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371666|gb|ADX43935.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 540 Score = 319 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 112/495 (22%), Positives = 191/495 (38%), Gaps = 74/495 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + +L +++W++A L G +DF I L+R E R ++ Sbjct: 1 MSLTLDTLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEE-RVKQLQQVEGLS 59 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + +E K F + +S + N L+ I + + + + + Sbjct: 60 LLDATVEVLDKWGD--FPPEARWSHLIARTENIGEALDKAFADIEANNTELQHVLTATQY 117 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 L A L ++ ++F+ L D ++ + YE+LI++F + + +F T Sbjct: 118 GDK-RVLSDA-TLQRLLRHFNQYRLGNADLYKADMLGDAYEYLIKQFADDAGKKGGEFYT 175 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238 P+ VV L L+ P ++YDPTCG+GG L ++ +H+A P Sbjct: 176 PKAVVQLVVELI----------DPQPGHSVYDPTCGSGGMLVESAHHIAKLPKGTLLGQP 225 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294 + +GQE T A+ + + + I +G TL + K F Sbjct: 226 NALLYGQEKNLGTWAIAKLNLYLHNMR--------AQIDRGDTLVEPRHLEGGYLKTFDR 277 Query: 295 CLSNPPFGKKWE-------------------KDKDAVEKEHKN--GELGRFGPGLPKISD 333 ++NPPF K ++ +K GRF G+P Sbjct: 278 VIANPPFSAKAWWTPLELEAEAAQDSEGGADNNRKPKTPNYKTVSDPFGRFSYGVPPRGY 337 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------E 383 + F H+ L+ GR I+L LF G E +IR LL Sbjct: 338 ADLAFAQHMLASLKAD----GRMGIILPHGVLFRGGE---EGKIREGLLFGTDAASGGQP 390 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 DLIEAIV LP LF+ T I + +L+ RK RGKV +I+A+ + GK + Sbjct: 391 GDLIEAIVGLPPALFYNTGIPACVLVLNKRKPVGLRGKVIIIDASREYLE----GKAQNS 446 Query: 444 INDDQRRQILDIYVS 458 + +I+ + + Sbjct: 447 LRPKDVERIVRTHKA 461 >gi|294101456|ref|YP_003553314.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261] gi|293616436|gb|ADE56590.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261] Length = 493 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 97/526 (18%), Positives = 191/526 (36%), Gaps = 61/526 (11%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 + +W+ A+ L G+ + +D+ V+L L+ + + E + + + + Sbjct: 6 EFEDKLWEMADKLRGNIQPSDYKDVVLGLIFLKYISDSFEEKYNELVAE-----EEGFEE 60 Query: 70 ESFVKVAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSS 122 + VA FY + + + ++ I + N K + Sbjct: 61 DRDAYVAENIFYVPPSARWDFIKKNAKQSTIGQIIDDAMITIERENRNLKGVLPKNYARP 120 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + + L ++ FS + + ++ +YE+ + +F +F TP Sbjct: 121 ELDK----AKLGELVDLFSFNLGNKEAKAQDILGRVYEYFLGKF----GSSEGEFYTPPS 172 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V L ++ +YDP CG+GG + V + + Sbjct: 173 IVKLLVGMI-----------EPYKGRVYDPCCGSGGMFVQSSRFVEEH---QGRKDDIHI 218 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQE T +C + IR ++ + + T DL R Y L+NPPF Sbjct: 219 FGQEYTATTWRLCKMNLAIRGIDGNLGA------RDADTFGNDLHKNIRADYILANPPFN 272 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + R+ G+P + + ++ H+ +KL G A VL++ Sbjct: 273 VS---------DYTLIPDDARWKYGIPPEKNANYAWIEHIISKLSPT----GVAGFVLAN 319 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 + E+EIR+ ++E L++ IV +P +LF+ I LW +S K E ++ K+ Sbjct: 320 GSMST--TTKAEAEIRKNIIEAGLVDCIVTMPPNLFYNVTIPVCLWFISK-KRENKQDKI 376 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 I+A + T + K R +D + +I D Y + + K D + F + + Sbjct: 377 LFIDARKMGTMVTR---KHREFSDGEIAKIYDTYHNWRDNKK-EYKDIQGFC-KSADIEE 431 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 +IL +E + + L M + + Sbjct: 432 VREHEYILTPGRYVGIEEVEDDGEPFEEKMTRLTGELAEMFAKSHK 477 >gi|298292626|ref|YP_003694565.1| type I restriction-modification system, M subunit [Starkeya novella DSM 506] gi|296929137|gb|ADH89946.1| type I restriction-modification system, M subunit [Starkeya novella DSM 506] Length = 505 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 104/487 (21%), Positives = 184/487 (37%), Gaps = 57/487 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59 + + +W + G + IL L+ + R+++ Sbjct: 2 NDHLTQQQVNQTVWAACDTFRGVVDAGQYKDYILVMLFLKYISDHWNDHLEIYRKQFGGD 61 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 ++ E FV G SFY+ E LE + + +F + D Sbjct: 62 ETRIRRRLERERFVLPEGASFYDLYEARNEPNIGELINIALERIEDANRTKLEGVFRNID 121 Query: 120 FSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F+S ++ L + ++F+ ++L P V + ++ Y +LI RF S+ + A Sbjct: 122 FNSEANLGRVKDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKA 181 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP V L L +P T+ DP CG+G L A V Sbjct: 182 GEFYTPSAVSRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEEVGSEN--- 228 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 +GQE+ T A+ M + + I+ TL+ Sbjct: 229 -----FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDHLM 276 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 +F ++NPPF + A + K R+ G+P S G F+ H+ + Sbjct: 277 KFDVVVANPPFSLDKWGAESADTDQFK-----RYWRGIPPKSKGDYGFITHMIEIAKRLS 331 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GR A+++ LF G A E IR+ L+E +L++A+V LP +LF T I + + Sbjct: 332 ---GRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVF 385 Query: 411 SNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + + E R V I+A +T GK + ++++ ++L+ Y +R + +S Sbjct: 386 DRSREQGGVNEDRRDVLFIDAGKEFTP----GKTQNVMDEAHISKVLETYAARSEIEKYS 441 Query: 466 RMLDYRT 472 Sbjct: 442 HRASPEE 448 >gi|169825074|ref|YP_001692685.1| type I restriction-modification system DNA methylase [Finegoldia magna ATCC 29328] gi|167831879|dbj|BAG08795.1| type I restriction-modification system DNA methylase [Finegoldia magna ATCC 29328] Length = 502 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 114/540 (21%), Positives = 208/540 (38%), Gaps = 60/540 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E T + IW A LWG ++ KVI+ LR + A E + E+ Sbjct: 1 MAEKTNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISTAFEQRYKELVEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKA 113 G + + F+ E ST+ + + + I S + N K Sbjct: 59 ---GDGFEDDRDAYTMENIFFVPKEARWSTIAAAAHSPEIGTVIDSAMRAIETENKNLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L + F + I++ + ++ YE+ I +F + Sbjct: 116 VLPKNYGSPDLDK----KVLGDVVDIFTNNIDMSDTEASEDLLGRTYEYCIAQFAEKEGV 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 G +F TP VV ++L P +YD CG+GG + + G+ Sbjct: 172 GGGEFYTPSSVVKTLVSIL----------KPFENCRVYDCCCGSGGMFVQSEKFLEAHGA 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + +GQE P+T + M IR +++D + T S DL + Sbjct: 222 KRGA---ISVYGQEANPDTWKMAKMNMAIRGIDADFGPYNA------DTFSNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + + R+ GLP + + ++ H+ + L Sbjct: 273 DFILANPPFNYHPWGQQA-------LQDDKRWKYGLPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L SGE IR+ ++E+DLIE IVA+PT LF+ I LW +S Sbjct: 322 NGKIGLVLANGALST--QTSGEGTIRKKIIEDDLIEGIVAMPTQLFYSVTIPVTLWFISK 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +++GK I+A + + K R +++ +++ D + + +NG Sbjct: 380 NK--KQKGKTLFIDARKMGHMVDR---KHRDFDEEDIQKLADTFTAFQNG-----TLEDV 429 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + +IL +E + + L M ++ + Sbjct: 430 KGFCAVASLEDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMARLTSELSDMFEKSHELED 489 >gi|124008339|ref|ZP_01693034.1| type I restriction-modification system M subunit [Microscilla marina ATCC 23134] gi|123986128|gb|EAY25964.1| type I restriction-modification system M subunit [Microscilla marina ATCC 23134] Length = 524 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 113/504 (22%), Positives = 198/504 (39%), Gaps = 76/504 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + +L ++W +A+ L G +DF I L+R E + +K Sbjct: 1 MSK--LTLETLEGWLWDSADILRGSTDSSDFKNYIFGLLFLKRSNDVFEEEVAQKMDK-E 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLES---YIASFSDNAKAIF 115 + + + E + F E L N L+ I + + + + Sbjct: 58 SLSREDAEEEVY-------FKMPPEARWQYLIEQTENIGIALDKAFGAIERENQSLEGVM 110 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F + +L ++ ++F+ L D ++ + YE+LI++F + + Sbjct: 111 TAIKFGDK--EVLSNEVLQRLLRHFNKHSLQNKDLESGDLLGDAYEYLIKQFADDAGKKG 168 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR VV+L L+ P +YDPTCG+GG L ++ +VA+ Sbjct: 169 GEFYTPRGVVNLIVRLI----------KPQPGHRVYDPTCGSGGMLIESARYVANQPEGI 218 Query: 235 K-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-- 291 K + GQE T A+ M++ E S ++Q+G TL+ + Sbjct: 219 KGGVVDIALFGQEKNLSTWAIGKLNMILHNFE-------SADLQKGDTLTNPRHADAQKG 271 Query: 292 ---FHYCLSNPPFGKKWE------------------------KDKDAVEKEHKNGELGRF 324 F ++NPPF K K + + GR Sbjct: 272 LQVFDRVIANPPFSMNGWWTPAENAAEEENNDQDRTPDAKKKKKKTPNYAKEVSDPFGRL 331 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G+P + FL H+ L G+A +VL LF G E +IR+ LL+ Sbjct: 332 VYGVPPRGYADLAFLQHMLASLRQD----GKAGVVLPHGTLFRGG---SEGKIRQALLQA 384 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E IV LP+ LF+ T I +W+L+ K ++G+V ++ A+ + GKK+ + Sbjct: 385 DLVEGIVGLPSALFYNTGIPAAIWLLNKDKNPAQKGRVAIVEASRDYQE----GKKQNQL 440 Query: 445 NDDQRRQILDIYVSRENGKFSRML 468 D +I+ Y + + Sbjct: 441 LDTHIDKIVKAYEVLADVDKYMRV 464 >gi|59713720|ref|YP_206495.1| type I restriction-modification system methylation subunit [Vibrio fischeri ES114] gi|59481968|gb|AAW87607.1| type I restriction-modification system methylation subunit [Vibrio fischeri ES114] Length = 488 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 113/492 (22%), Positives = 198/492 (40%), Gaps = 55/492 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L ++W A L G D+ + I P +R+ + + S+ Sbjct: 3 TQQELEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRICDVYDEEFENALAE------SD 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDN-AKAIFEDFDF 120 DLE + F + + T T N I + + + IF D + Sbjct: 57 GDLEYAAFAENHHFQVPKGAHWNDVRETTTNIGLALQNAMRAIEKANPDTLEGIFGDASW 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL A +L + +++S L+ VPD + N YE+LI+ F + A +F T Sbjct: 117 TNK-ERLSDA-MLTNLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTN 174 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VV L T ++ +P ++YDPTCG+GG L + H+ D G ++ Sbjct: 175 RTVVKLMTMIM----------APQPGESVYDPTCGSGGLLLNCALHLKDEGKEYRTLK-- 222 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE+ T A+ M + +E +I +G+TLS K+F+ L Sbjct: 223 -LYGQEINLLTSAIARMNMFMHGIE-------EFDIVRGNTLSNPGLLENDELKKFNVIL 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K K ++ GR G P F H+ + G GR+ Sbjct: 275 ANPPYSIKSWD-----RKAFESDPYGRNVWGTPPQGCADYAFQQHIQ---KSLDLGNGRS 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 + LF E+ +RR ++E D +E ++ L +LF+ + + L I K E Sbjct: 327 ISLWPHGILFR----DAETAMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIE 382 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475 ++ K+ INA +N G ++ +I + Y E F+ ++D + Sbjct: 383 SKKDKILFINAVKEVRQDKNIG----YLDQVHIDKIFNAYNKFENEDSFAVLVDKQEVLD 438 Query: 476 RRIKVLRPLRMS 487 ++ + L + Sbjct: 439 KKANMAINLYIR 450 >gi|146295062|ref|YP_001185486.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] gi|145566752|gb|ABP77687.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] Length = 505 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 118/531 (22%), Positives = 208/531 (39%), Gaps = 54/531 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +W AE L G +D+ + I P +RL + E + Sbjct: 5 NKKKLEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEALEIHEG----- 59 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + F E + S N +++ I + + +F D ++ Sbjct: 60 -DAEYAAMPMFHRFDIPKEARWEKVRHTSKNIGEAIQNALRLIEANNPRLHGVFGDAQWT 118 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + ++FS I L +V + YE+LI++F + A +F T R Sbjct: 119 NK-ERLPDH-LLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 176 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPP 238 VVHL T ++ T YDPTCGTGG L +A+ + G + Sbjct: 177 TVVHLMTRIMGL----------KPGETAYDPTCGTGGMLLNAVMDLRTHGEPSADQQQWR 226 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294 + +GQE+ T A+ M + +E ++ +G TL+ F K+F Sbjct: 227 TVHLYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLADPKFIENDQLKQFDV 279 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPP+ K + GR G+P F H+ L+ G Sbjct: 280 IFANPPYSIK-----KWNRDKFAADPYGRNLYGVPPQGCADYAFYTHIIKSLKPDT---G 331 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA++ LF E IR+ ++E+D+IEA++ L +LF+ + + + + +L+ K Sbjct: 332 RAAMLWPHGVLFR----DSEQSIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNK 387 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473 ER+ KV IN + T R ++D+ + + Y + E + ++D T Sbjct: 388 PAERKNKVLFINGVEHVTRERA----HSRLSDEDLAVLCEAYFAPEKQSDITALVDIDTL 443 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + PL + + A +W+ + + K + + Sbjct: 444 KENLYNLSIPLYVQAQNNGEVHDIEHAIESWKVSRVQLKKQTNKLFKSLKE 494 >gi|114330559|ref|YP_746781.1| N-6 DNA methylase [Nitrosomonas eutropha C91] gi|114307573|gb|ABI58816.1| N-6 DNA methylase [Nitrosomonas eutropha C91] Length = 542 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 193/490 (39%), Gaps = 73/490 (14%) Query: 2 TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 + + L ++K A+ L G+ + +D+ V L L+ + A E + Sbjct: 4 SNNNKTTDHLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHAE--LAA 61 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112 + + E A F+ E S L + R + + I +++ K Sbjct: 62 ESAAAAEDKDEYL---ADNIFWVPKEGRWSHLKANAKRPEIGTLIDDAMRAIEKDNESLK 118 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171 + + ++ +L ++ SGI ++ V+ +YE+ + +F Sbjct: 119 GVLPKDYARPALNKV----MLGELIDLISGIAMNEGGDKSKDVLGRVYEYFLSQFAGAEG 174 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TPR VV + +L +YDP CG+GG + V + G Sbjct: 175 KRGGEFYTPRSVVQVLVQML-----------EPYAGRVYDPCCGSGGMFVQSEKFVLEHG 223 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTG 289 + +GQE T + + +R ++SD I+ + + KD Sbjct: 224 GRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRD 272 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 RF + L+NPPF + E R+ G+P + + + +L H+ L Sbjct: 273 LRFDHILANPPFNISDWGGD-------RLREDPRWQFGVPPVGNANYAWLQHIHWHLAPF 325 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G A +VL++ + SGE EIR+ ++E D ++ +V LP LF+ T I LW Sbjct: 326 ----GTAGVVLANGSM--SSNQSGEGEIRKAMVEADAVDCMVTLPGQLFYSTQIPACLWF 379 Query: 410 LSNRKT--------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 L+ K+ +RRG+V I+A ++ T + RR + D+ ++I D Sbjct: 380 LARDKSNGKRGSLSKGGETLRDRRGEVLFIDARNMGTLVDRT---RRELTDEDIQKIADT 436 Query: 456 YVSRENGKFS 465 Y + K + Sbjct: 437 YHAWRGEKVA 446 >gi|198283096|ref|YP_002219417.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666139|ref|YP_002425314.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247617|gb|ACH83210.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518352|gb|ACK78938.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 520 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 125/551 (22%), Positives = 216/551 (39%), Gaps = 58/551 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M G SL ++IW A + G + ILP +RL + + + + Sbjct: 1 MANNNGKDKSLESWIWDAACSIRGAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVG 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLES---YIASFSD 109 + + ++ K+ FY +S+ S + S IA + Sbjct: 61 SRKKAFQLAKADHKLV--RFYLPLVPDDPEQPVWSVIRKLSDWIGEGVTSHMRAIARENP 118 Query: 110 NAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + I + DF++T R L + + S L + V ++ YE+LIR+F Sbjct: 119 LLQGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFA 178 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + A +F TP +V + + +L P +YDPTCG+GG L + Sbjct: 179 EGGGQSAGEFYTPPEVGTIMSRVL----------QPEPGMEIYDPTCGSGGLLVKCEIAM 228 Query: 228 ADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + K GQE PET A+ M+I +E I+ G T Sbjct: 229 EETAKGKKRTVAPLKLFGQEFTPETWAMANMNMIIHDMEG--------QIEIGDTFKNPK 280 Query: 287 F----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLM 340 F + F ++NP + + W E ++ N EL RF G G P S ++ Sbjct: 281 FRSKGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKSSADWGWVQ 335 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDL 397 H+ + N GRAA+VL + G +G E +R+W +++DLIE+++ LP +L Sbjct: 336 HIHASM----NATGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPENL 391 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T + L+ K ER+GKV L+NA+ ++ G + I + ++I D + Sbjct: 392 FYNTTAPGIVLFLNKAKAHERKGKVFLVNASQVFEK----GDPKNFIPEAGIQRIADTLI 447 Query: 458 SRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + SR++D+ + P R D + + + Sbjct: 448 GWVEAEKLSRIVDHAELKKNDYNI-SPSRYIHTSDAETYRPIAEIVEELEAIEAEAKETD 506 Query: 517 DILKPMMQQIY 527 L +++Q+ Sbjct: 507 QALDRILKQLG 517 >gi|255322118|ref|ZP_05363265.1| type I restriction-modification system, M subunit [Campylobacter showae RM3277] gi|255300816|gb|EET80086.1| type I restriction-modification system, M subunit [Campylobacter showae RM3277] Length = 496 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 109/529 (20%), Positives = 200/529 (37%), Gaps = 72/529 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + ++ N +WK + G +D+ +L ++ L + +R +Y Sbjct: 4 TTQETINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLEQLRAEYGDKTER 63 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFED 117 K+ F + L + NL + + + IF Sbjct: 64 IEA-----KLKKEKFKLDESCTFEYLLAHKEAVNLGEIMNKTLEKIEEDNKDKLEGIFRS 118 Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171 DF++ E+ +L + ++F+ ++L P + + ++ + YE+LI F S+ Sbjct: 119 IDFNNKNKLGDTKERNAILQNLLEDFNDSRLDLRPSMLEGNDIIGDAYEYLIAHFASDAG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +V L L+ P +YDPTCG+G L A V Sbjct: 179 KKGGEFYTPSEVSTLLAKLV----------EPKDGDMIYDPTCGSGSLLIKASKEVGSKN 228 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289 +GQE +THA+C M + + I+ G T+ L Sbjct: 229 --------FRLYGQEKNGQTHALCKMNMFLHEINDAV-------IEWGDTIRNPLHLHDN 273 Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346 K F ++NPPF N RF LP S G F++H+ L Sbjct: 274 LIKTFDIVVANPPFSLD-----KWGADFAGNDPFMRFSSYALPPKSKGDYAFVVHMIKSL 328 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 N G+ +VL LF G S E +IR+ L+E +L++A++ LP +LF+ T+I Sbjct: 329 ----NKNGKMGVVLPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPANLFYGTSIPAC 381 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + + ++ E V I+A+ + GK + + +I+ +Y +R + +S Sbjct: 382 ILVFKKNRSNE---DVLFIDASKEFEK----GKNQNSLTAQNIDKIVSVYKNRSEIEKYS 434 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + + P ++ ++ + T ++S L Sbjct: 435 HLASLSEIKENDYNLNIP---RYVDTFEEEEAVDIEATKAEISRLEAEL 480 >gi|197247972|ref|YP_002149445.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211675|gb|ACH49072.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 499 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 186/461 (40%), Gaps = 54/461 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +W A + G +D+ I P +R+ + E++ S Sbjct: 5 NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYD-------EEFADAMESV 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + + + + L+ I + IF D ++ Sbjct: 58 GDAELAKGKMFHRIQIPENCHWRDVFAETKDIGQALKDSFRGIELANPKLHGIFGDASWT 117 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + +F+ + L +V D M YE+LI+RF + ++ A +F TPR Sbjct: 118 NK-ERLSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPR 175 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L +L P ++YDP CGTGG L + ++HV + G ++ Sbjct: 176 TIVRLMVNIL----------DPKAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 GQE T A+ + + E +I +G TL + F + F ++ Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLQSDRLETFDCVVA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF K N GR GL ++G ++ H+ L N GR A Sbjct: 276 NPPFSLKEWGY-----DLWSNDPYGRKQYGLAPKTNGDFAWVQHMFASL----NDNGRMA 326 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL LF G A E IR LL+ + I AI+ + ++LF+ T I + +L + Sbjct: 327 VVLPHGVLFRGGA---EGVIRTKLLKENRIVAIIGVASNLFYGTGIPACILVLRKSRPAT 383 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + V +INA +++T G+ + +++ Q I IY Sbjct: 384 HKDHVLIINAEEIYTK----GRAQNTLSNKQADDIYQIYHD 420 >gi|271968782|ref|YP_003342978.1| Site-specific DNA-methyltransferase [Streptosporangium roseum DSM 43021] gi|270511957|gb|ACZ90235.1| Site-specific DNA-methyltransferase (adenine- specific) [Streptosporangium roseum DSM 43021] Length = 544 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 104/562 (18%), Positives = 184/562 (32%), Gaps = 67/562 (11%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-----REKYL 60 S + + +WK A+ L G + + +L L+ + A R+ + + Sbjct: 18 SSTKEIQDILWKAADKLRGSMDAAQYKEFVLGLVFLKYVSDAFAERRATLAADPELAELP 77 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---------TRNNLESYIASFSDNA 111 + E F+ + ++ I + Sbjct: 78 EHRRAAFLEEKDEYTEANVFWVPPPARWDYISDNAQSAVDGVGKLLDDAMDAIMKENPTL 137 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFGSE 169 + + + L ++ S V+ YE+ + RF Sbjct: 138 TGVLPKIFNRDNVDK----KRLKELVDLISDARFTGHGARPAQDVLGETYEYFLERFARA 193 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP VV L +L +YDP CG+GG A V Sbjct: 194 EGKRAGEFYTPASVVRLLVEIL-----------EPYEGRVYDPCCGSGGMFVQAGKFVTA 242 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + +GQE T + + I ++ D + T D Sbjct: 243 HAGRDHTH-DIAVYGQETNERTWRLAKMNLAIHGMDPKGVGD-----RWADTFDDDKLPD 296 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + + ++NPPF +N R+ G+P S+ + +L H+ KL Sbjct: 297 LKADFVMANPPFNLS---------DWARNVGDRRWMYGVPPQSNANYAWLQHIVFKL--- 344 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G ++ + S SGE EIR L++ DL+ +VALP +LF T I LW Sbjct: 345 GERGSAGVVLANGSM---ASKQSGEGEIRTKLVQADLVACMVALPGNLFRTTAIPACLWF 401 Query: 410 LSNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 L+ KT ERRG+V I+A +L T + RI+ D+ +I D Y + Sbjct: 402 LTKDKTPQGAKALAERRGEVLFIDARNLGTMVDRTE---RILTDEDLARIADTYHAWRGT 458 Query: 463 KFSR----MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + +R + + F+L ++ + + + Sbjct: 459 RSARAKGLKYENVAGFCHSASLEEIREHDFVLTPGRYVG-ATEVEEDPDAEPVEERVARL 517 Query: 519 LKPMMQQIYPYGWAESFVKESI 540 K + + E V+E + Sbjct: 518 TKELFEHFEESARLEKVVREQL 539 >gi|317501108|ref|ZP_07959314.1| type I restriction-modification system [Lachnospiraceae bacterium 8_1_57FAA] gi|316897495|gb|EFV19560.1| type I restriction-modification system [Lachnospiraceae bacterium 8_1_57FAA] Length = 501 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 97/539 (17%), Positives = 205/539 (38%), Gaps = 59/539 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + IW A LWG +++ VI+ L+ + A + + + Sbjct: 1 MAEKNTANIGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDKKYQQLVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113 G + + + F+ + + + + + + I + + K Sbjct: 59 ---GDGFEDDPDAYLEDNVFFVPEDARWDKIAAAAHKPEIGTVIDDAMRAIEADNKKLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + S + + +L + F+ +++ V+ YE+ I +F + +G Sbjct: 116 VLPKNYASPDLDK----RVLGDVVDLFTNMDMGETEGNRDVLGRTYEYCIAQFAEKEGKG 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP +V+ ++L P +YD CG+GG + + + Sbjct: 172 GGEFYTPSSIVNTLVSIL----------KPYSNCRVYDCCCGSGGMFVQSAKFIQAHSGN 221 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQE P+T + + + IR L++D T + DL + Sbjct: 222 RG---SISIYGQEANPDTWKMAIMNLTIRGLDADLGA------YHADTFTNDLHPTLKAD 272 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + L+NPPF ++ R+ G+P S+ + ++ H+ + L Sbjct: 273 FILANPPFNYNPWGQDKLMD-------DVRWKYGIPPASNANFAWIQHMIHHLAP----N 321 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+ +VL++ L GE EIR+ ++E+DLIE I+A+P LF+ I LW +S Sbjct: 322 GKIGLVLANGAL--SSQSGGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFISKG 379 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K +++GK I+A + + K R ++ +++ + + + +NG Sbjct: 380 K--KQKGKTVFIDARKMGHMVDR---KHRDFTEEDIQKLANTFEAFQNG-----TLEDEK 429 Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + ++L +E + + + L M ++ + Sbjct: 430 GFCSVATIQDIAKQDYVLTPGRYVGIEEQVDDGEPFEEKMTRLTSELSDMFERSHELED 488 >gi|78044904|ref|YP_359683.1| type I restriction-modification system subunit M [Carboxydothermus hydrogenoformans Z-2901] gi|77997019|gb|ABB15918.1| type I restriction-modification system, M subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 814 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 104/482 (21%), Positives = 198/482 (41%), Gaps = 55/482 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + A L ++K A+ L G +++ + I L+ + + Y G S+ Sbjct: 9 TLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGFSD 68 Query: 67 IDLESFVKVAGY--SFYNTSEYSLSTLGS--TNTRNNLESYIASF---SDNAKAIFEDFD 119 ++ + FY + + + + N L +++ + + + D Sbjct: 69 EQIKELTEDPNSYDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPELDGVLKHID 128 Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDF 177 F++T +++ K L + +F+ L P++ + YE+L++ F + +F Sbjct: 129 FNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFPDLLGAAYEYLLKEFADSAGKKGGEF 188 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP V L L+ PG T+YDPT G+GGFL +A ++V + G Sbjct: 189 YTPAGVKKLMVRLV----------KPGENMTVYDPTVGSGGFLIEAFHYVEEKGQD---R 235 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFH 293 L +GQEL T ++C M++ + +I+ L+ +F KRF Sbjct: 236 YNLGLYGQELNGLTWSICKMNMILHGI-------SDAHIENEDVLTTPMFLENGYIKRFD 288 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLANKLELPPN 351 L+NPPF + + RF G ++FL H+ L+ Sbjct: 289 RVLANPPFSENYT--------RANMQYPERFKYGFTPETGKKADLMFLQHMIASLKDD-- 338 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A V+ LF G E IR +++ +IEAI+ LP LF+ T I + +++ Sbjct: 339 --GIMATVMPHGVLFRGGQ---EKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVIN 393 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470 K E + K+ INA + G+ + + + +I++++ ++ +SR++D Sbjct: 394 KNKPEHLKNKILFINADREYGE----GRNQNFLRPEDIEKIVNVFDEKKEIPGYSRLVDI 449 Query: 471 RT 472 + Sbjct: 450 KE 451 >gi|330874480|gb|EGH08629.1| type I restriction-modification system DNA methylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 418 Score = 318 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 107/412 (25%), Positives = 168/412 (40%), Gaps = 105/412 (25%) Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 + + S LF G AGSGES IRR L+ENDL++AI+ LP +LF+ T I TY+W+LS+ K +R Sbjct: 1 MHNGSSLFTGDAGSGESNIRRHLIENDLLDAIIQLPNNLFYNTGITTYIWLLSSNKPVQR 60 Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRE--------NGKFSRMLD 469 RGKVQLI+A+ L+ +R N G K + I Y+ +G +++ D Sbjct: 61 RGKVQLIDASLLYRKLRKNLGNKNCEFAPEHIELITQTYLDVASLDRPAGGDGIAAQVFD 120 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP-------- 521 R FGY ++ + RP R + L D R+ W + L Sbjct: 121 NRDFGYHKVSIERPDRRKAQFSAERIETLRFDKALREPMQWIYQQWGEALYQDETLAKHE 180 Query: 522 ----------------------------------------MMQQIYPYGWAESFVKESIK 541 +MQ I + + + + Sbjct: 181 KAILAWCEEQGLELNIKQRKKLLNLETWAKQALLVTVANYLMQAIGSDEYDDFNLFAKLV 240 Query: 542 SNEAKTL----KVKASKSFIVAFINAFGRKDPRADPVT---------------------- 575 K L +K S +NA D A V Sbjct: 241 DKVLKQLNKEVGIKLGASERNQVLNAVSWYDENAVKVLRKVEKFDRAELAALLERLDCIE 300 Query: 576 -----------DVNGE---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621 D GE + +++L + E++P +SI +F EV PHV +A+I+ Sbjct: 301 ADLVDFGYYPSDKAGEWITYESNSDLRDSESIPLADSIHHFFKAEVQPHVEEAWINL--- 357 Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 E ++GYEI+FN++FY++QP R + ++ E+ +E Q L+ E+ Sbjct: 358 -----ESVKIGYEISFNKYFYKHQPLRSMDEVAREIVALEQQAEGLIAEILG 404 >gi|294339298|emb|CAZ87654.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp. 3As] Length = 521 Score = 318 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 99/474 (20%), Positives = 181/474 (38%), Gaps = 60/474 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-----FG 63 L +W A+ L ++ ++L ++ + A + R ++ ++ + Sbjct: 3 QDLKKTLWATADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKAQFNDPASDLYL 62 Query: 64 GSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 D E+ ++ Y F+ TL ++ I + + Sbjct: 63 PDAADQEAALEERDYYTMANVFWVPEAARWETLRGQAKFWDIGIRIDQALDAIEADNPRL 122 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + + G + ++ S I T V+ +YE+ + +F S Sbjct: 123 KGILDKRFGRAQLE----PGKMGELVDLVSTIGFGSGTHAKDVLGEVYEYFLGQFASAEG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV + +L +YDP CG+GG + + G Sbjct: 179 KKGGQFYTPASVVKVLVEVLAPHKG-----------KVYDPCCGSGGMFVQSEKFIESHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE P T + + IR ++ + ++ + T +D + Sbjct: 228 GR---FGDISIYGQEANPTTWRLVAMNLAIRGMDFNLGKEPA------DTFHRDQHPDLK 278 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + R+ G P S+ + +L H+ L N Sbjct: 279 ADYVLANPPFNISDWGGD-------RLLDDKRWLYGTPNPSNANYAWLQHILWHL----N 327 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A +VL++ + + E IR+ ++E D++E +VALP LFF T I LW L+ Sbjct: 328 ASGQAGVVLANGSM--SSNQNNEGVIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFLT 385 Query: 412 NRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 KT +RRG+V I+A L EG+ R+ +D+ +I D Sbjct: 386 KSKTAHGRDRRGEVLFIDARKLGRM---EGRVFRVFDDEDVAKIADTVHRWRQD 436 >gi|149920794|ref|ZP_01909257.1| possible type I restriction-modification system methylation subunit [Plesiocystis pacifica SIR-1] gi|149818312|gb|EDM77764.1| possible type I restriction-modification system methylation subunit [Plesiocystis pacifica SIR-1] Length = 511 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 114/535 (21%), Positives = 208/535 (38%), Gaps = 62/535 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ T + L +++W A L G D+ + I P +RL + + Y Sbjct: 4 MS-DTLTQDELESYLWGAATILRGLVDAGDYKQFIFPLVFYKRLSDVWDEDYAEALADY- 61 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLES---YIASFSD-NAKAI 114 + E + A F + L + N ++ I + + + I Sbjct: 62 -----DDSEELALAQANERFVIPEGAHWNDLRKAAKNVGKAIQDAMRAIEAANPGRLEGI 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F D +++ RL L + ++FSG L VP+ ++ + YE+L+ +F + A Sbjct: 117 FGDAPWTNK-NRLPDH-TLKSLLEHFSGQVLSIARVPEDMLGDGYEYLVGKFADDGGSTA 174 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++F T R +VHL +L P ++YDPTCGTGG L A+ V G Sbjct: 175 QEFYTNRTLVHLMAQML----------KPQDGESIYDPTCGTGGMLLSALAEVRRTGGDQ 224 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 + +GQE T ++ +++ +E I++G TL++ F + Sbjct: 225 RTLG---LYGQERNHMTASIARMNLVLHGVEDFE-------IKRGDTLARPRFVEGDRLR 274 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F L+NPP+ K + GR G P F H+ ++ Sbjct: 275 TFDVVLANPPYSIKRWN-----REAWGADAWGRNFLGTPPQGRADYAFFQHILKSMDPET 329 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GR AI+ LF E ++R+ L+E DL+E ++ L +LFF + + + Sbjct: 330 ---GRCAILFPHGVLFR----KAEQDLRQKLVEADLVECVLGLGPNLFFNSPMEACVVFC 382 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469 + K R+G++ I+A + R + + +++I Y + + FS++ Sbjct: 383 RSEKPAARKGRILFIDAVNEIARERAVS----FLRPEHQQRIFGAYEAFGDESSFSKVAT 438 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT------WRKLSPLHQSFWLDI 518 R + PL + ++ K E W + ++FW + Sbjct: 439 LDEVAARGHNLSIPLYVKRVVKKKKKKAAEDSGARSLSEVWTEWEQEDRAFWQQM 493 >gi|271498973|ref|YP_003331998.1| type I restriction-modification system, M subunit [Dickeya dadantii Ech586] gi|270342528|gb|ACZ75293.1| type I restriction-modification system, M subunit [Dickeya dadantii Ech586] Length = 507 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 107/542 (19%), Positives = 196/542 (36%), Gaps = 58/542 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ + N +W + G + IL L+ + + + +Y Sbjct: 1 MSNKID-QNRINNVLWSVCDIFRGTISPDTYKDFILTMLFLKYISDVWQDHYDGYKAEYG 59 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113 + E FV SFY ++ L + + K Sbjct: 60 DEPELIEEMMKNERFVLPKQASFYTLFQHRNEPGNGERIDKALHAIEEANGTKLKDAGKS 119 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGS 168 +F+D F+ +K G+L + + FS +L V+ N YE+LI +F + Sbjct: 120 VFQDISFNTDKLGEEKQKNGILKDLLEEFSCADLDLKPSRIGGLDVIGNAYEYLIGKFAA 179 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A ++ TP +V L LL P T+ DP CG+ L V Sbjct: 180 NSGQKAGEYYTPPEVSDLMAELL----------DPQPGDTICDPACGSASLLMKCGRKVV 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 +GQE T ++ M + + + I+ G T+ Sbjct: 230 QNHGS----KQYELYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLL 278 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K F +NPPF E ++ + RF GLP + G F++H+ Sbjct: 279 DKNGDLKLFDIVTANPPFSLD-----KWGYSEVESDKFSRFRRGLPPKTKGDYAFILHMI 333 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ GR +V+ LF G S E +IR+ L+E +L++A++ LP LFF T I Sbjct: 334 ETLKPKA---GRMGVVVPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPEKLFFGTGI 387 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462 + I +K V I+A+ + GK + ++ + +++ IY R+N Sbjct: 388 PASILIFKKQK---VDDNVLFIDASREFDP----GKNQNRLSTENIVKVVKIYRDRDNVD 440 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 K++ + + + P + ++ + + ++L ++ K + Sbjct: 441 KYAYLASLQEIRDNDYNLNIPRYVDTFEEEQEIDLMVVRAERKQLQAQLAELEAEMAKYL 500 Query: 523 MQ 524 + Sbjct: 501 EE 502 >gi|254448602|ref|ZP_05062061.1| type I restriction-modification system methyltransferase subunit [gamma proteobacterium HTCC5015] gi|198261791|gb|EDY86077.1| type I restriction-modification system methyltransferase subunit [gamma proteobacterium HTCC5015] Length = 499 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 119/533 (22%), Positives = 207/533 (38%), Gaps = 68/533 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +W A + G +D+ I P +R+ + + G Sbjct: 5 NIKDFEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYD---EEFIDAMEQVGDEE 61 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 + + E + S + L+ I + IF D ++ Sbjct: 62 LAKGDMF----HRIQIPQECHWKDVFSETKDIGQALKDAFRGIELANPKLHGIFGDASWT 117 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + +F+ + L +V D M YE+LI+RF + ++ A +F TPR Sbjct: 118 NK-DRLSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPR 175 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L +L P ++YDP CGTGG L + ++HV + G ++ Sbjct: 176 TIVRLMVNIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 GQE T A+ + + E +I +G TL + F + F ++ Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLVNDRLETFDCVIA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF K GR GL ++G ++ H+ L GR A Sbjct: 276 NPPFSLKEWGHALWSAD-----PYGRKQYGLAPKTNGDFAWVQHMFASLNEQ----GRMA 326 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL LF G A E IR LL+ + IEAI+ + ++LF+ T I + +L + + Sbjct: 327 VVLPHGVLFRGGA---EGAIRTKLLQENCIEAIIGVASNLFYGTGIPACILVLRKSRPAD 383 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD--YRTFG 474 + V +INA +++T G+ + +++DQ +I +IY +E G + ++ R Sbjct: 384 HQDHVLIINAEEIFTK----GRAQNTLSNDQADEIFNIYRQQETLGPKAEEIEGVARWVA 439 Query: 475 YRRIK-----------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 I+ V +PL I + L + + + + L Sbjct: 440 LTEIEENDFNLNIARYVQKPLEEETITVEEALKDFQQKLAALERAENELEALL 492 >gi|91773202|ref|YP_565894.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242] gi|91712217|gb|ABE52144.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242] Length = 519 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 99/542 (18%), Positives = 194/542 (35%), Gaps = 61/542 (11%) Query: 1 MTEFTGSAA--SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + ++ +WK A+ L + ++ ++L L+ + + E +++ Sbjct: 1 MAKNNNKTQDETIEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELYQKLQKG 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 + G++ + A F+ + S L S + + I + Sbjct: 61 DGDYTGAD-PEDRDEYKAENVFFVPAIARWSYLQSKAKQPEIGKDVDRAMDAIERENPLL 119 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170 K + + L + S I L ++ +++E+ + F Sbjct: 120 KGVLPKVFARGNL----DPTSLGGLIDLVSNIALGDAKARSADILGHVFEYFLGEFALAE 175 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TPR VV L +L ++DP CG+GG + VAD Sbjct: 176 GKRGGQFYTPRSVVELLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFVADH 224 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + +GQE T + + IR ++S + ++ + D Sbjct: 225 RGKVN---DISIYGQESNQTTWRLAKMNLAIRGIDSSQVKWNNEG-----SFLNDSHKDL 276 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + Y ++NPPF + GR+ G+P + + ++ H L Sbjct: 277 KADYVIANPPFNDSDWSGD-------LLRKDGRWKYGVPPAGNANYAWIQHFLYHLSP-- 327 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+A VL+ L + SGE +IR+ L+E+ +++ IV LP LF T I LW L Sbjct: 328 --NGQAGFVLAKGSLTS--KSSGEGDIRKELVESRMVDCIVNLPPKLFLNTQIPASLWFL 383 Query: 411 SNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 S K R ++ I+A ++ I + R + + +++ D Y + N + Sbjct: 384 SRNKANGKYRNRTDEILFIDARNMGHLINR---RTREFSPEDIQKVADTYHNWRNPDGNY 440 Query: 467 MLDYRTFGYRRIK-VLRPLRMSFILDKTGLARL---EADITWRKLSPLHQSFWLDILKPM 522 G+ + R + +++ L E D + + ++ + LK Sbjct: 441 E---DVKGFCNSTSIERVHELDYVVTPGRYVGLPVEEDDFDFNERFTGLKAEFEGQLKEE 497 Query: 523 MQ 524 Q Sbjct: 498 EQ 499 >gi|260905625|ref|ZP_05913947.1| N-6 DNA methylase [Brevibacterium linens BL2] Length = 532 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 96/477 (20%), Positives = 169/477 (35%), Gaps = 65/477 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L +WK A+ L G + VIL L+ + A E +S +R +Y G Sbjct: 12 TTMNELKATLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAFEEEQSLLRVEYEEQGID 71 Query: 66 NIDLESFVKVAG-----YSFYNTSEYSLSTLGSTNTRNN----------------LESYI 104 D+ + F + L + Sbjct: 72 EEDIAELLLDTDTYVGEGIFLVPEAARWTFLAENAKGQAPSGAEAGRTVGALIDEAMDQL 131 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162 + + + I + L ++ FS + +M +YE+ Sbjct: 132 MRANPSLRGTLPRLYNKDNIDQ----RRLGELVDLFSSTRFSRQGEHKARDLMGEVYEYF 187 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + F + +F TPR VV +L +YDP CG+GG Sbjct: 188 LGEFARAEGKRGGEFFTPRPVVRTMVEIL-----------EPYSGRVYDPCCGSGGMFVQ 236 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + D P + +GQE ET + + I +E + + G T Sbjct: 237 SEKFIEDNNGD---PREIAVYGQESIEETWRMAKMNLAINGIEVQGLGE-----KWGDTF 288 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 ++D+ + Y L+NPPF K ++ E R+ G+P + + ++ H+ Sbjct: 289 ARDIHADTQMDYVLANPPFNLK---------AWARSEEDPRWTFGVPPEKNANYAWIQHI 339 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 +KL G A + S N GE +IR ++E DL+ ++ALPT LF T Sbjct: 340 LSKLNDSGKAGVVMA---NGSMSSNTG---GEGDIRAQIVEADLVSCMLALPTQLFRSTG 393 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 I +W + +K G+V I+A D+ I R ++++ +I + + Sbjct: 394 IPVCVWFFAKKKGAR-AGEVLFIDARDMGHMISRAE---RSLSNEDIEKIAGTFHAW 446 >gi|28867248|ref|NP_789867.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|28850482|gb|AAO53562.1| type I restriction-modification system, M subunit, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 568 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 105/489 (21%), Positives = 193/489 (39%), Gaps = 68/489 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 S +L +++W++A L G +DF I L+R + + +RE+ Sbjct: 35 DKLSLETLESWLWESANILRGSIDSSDFKNYIFGLLFLKRYNDVFDERVTKLREE-ENLS 93 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 E K Y ++ + + N L+ I + + + + + Sbjct: 94 YGEAQEEIEDKWGKYP--ISARWFDLISRTENIGEALDKAFATIEANNPELQHVLTATQY 151 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 L A L ++ ++F+ +L D ++ + YE+LI++F + + +F T Sbjct: 152 GDK-RVLADA-TLQRLLRHFNQYKLGNDDLYKADMLGDAYEYLIKQFADDAGKKGGEFYT 209 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238 P+ VV L L+ P ++YDPTCG+GG L ++ +HV+ P Sbjct: 210 PKAVVQLVVELI----------DPRPGHSVYDPTCGSGGMLVESAHHVSGLPDGTLMGKP 259 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294 ++ +GQE T A+ + + + +I++G TL + K F Sbjct: 260 NVLLYGQEKNLGTWAIAKLNLYLHNMH--------ASIERGDTLVEPKHLDGDYLKTFDR 311 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN---------------GELGRFGPGLPKISDGSMLFL 339 ++NPPF K + E++ GR G+P + F Sbjct: 312 VIANPPFSAKSWWTPLELSNENEQENGKKVKAPNYKQVSDPYGRLVYGVPPRGYADLAFA 371 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------ENDLIEA 389 H+ L+ GR ++L LF E +IR LL D+IEA Sbjct: 372 QHMLASLKAD----GRMGVILPHGVLFRSGE---EGKIREGLLFGTGAASGNQPGDVIEA 424 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 IV LP+ LF+ T I + IL+ +K + KV +I+ + + GK + ++ + Sbjct: 425 IVGLPSALFYNTGIPACVLILNKQKPSALKDKVIIIDGSRDYLE----GKAQNSLHAEDI 480 Query: 450 RQILDIYVS 458 +I+ + + Sbjct: 481 LRIVSTHKA 489 >gi|21673506|ref|NP_661571.1| type I restriction system adenine methylase [Chlorobium tepidum TLS] gi|21646613|gb|AAM71913.1| type I restriction system adenine methylase [Chlorobium tepidum TLS] Length = 531 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 109/574 (18%), Positives = 207/574 (36%), Gaps = 93/574 (16%) Query: 2 TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 ++ G+ +L ++K A+ L G+ + +D+ V L L+ + A E A Sbjct: 6 SDKNGNGGNLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHKA--LLA 63 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112 + E A F+ E S L + + + + I + + K Sbjct: 64 EDALAAEDKDEYL---ADNVFWVPKEARWSHLQANAKQPTIGTLIDDAMRAIEKDNASLK 120 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI----------ELHPDTVPDRVMSNIYEHL 162 + + ++ +L ++ SGI + ++ +YE+ Sbjct: 121 GVLPKDYARPALNKV----MLGELIDLISGIGHLLPSPSGRGAGGEGQSFDILGRVYEYF 176 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + +F + +F TPR VV + +L +YDP CG+GG Sbjct: 177 LGQFAGAEGKRGGEFYTPRSVVRVLVEML-----------EPYSGRVYDPCCGSGGMFVQ 225 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-- 280 + V + G + +GQE + + +R +++D I+ + Sbjct: 226 SEKFVQEHGGRIG---DIAIYGQESNYTAWRLAKMNLAVRGIDAD--------IRWNNEG 274 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 + KD + Y L+NPPF + E R+ G+P + + + +L Sbjct: 275 SFHKDELRDLKADYILANPPFNISDWGGD-------RLREDVRWQFGVPPVGNANYAWLQ 327 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H+ L G A +VL++ + SGE EIRR +LE D ++ +VALP LF+ Sbjct: 328 HIYWHLAP----NGTAGVVLANGSM--SSNQSGEGEIRRAMLEADAVDCMVALPGQLFYS 381 Query: 401 TNIATYLWILSNRKTE---------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 T I LW L+ K +RRG V I+A + + RR ++D++ ++ Sbjct: 382 TQIPACLWFLARNKNPANGKTGGLRDRRGHVLFIDARKMGVLVDRT---RRELSDEEIQK 438 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIK----------VLRPLRMSFILDKTGLARLEAD 501 I Y + + G+ + VL P R + + Sbjct: 439 IARTYHAWRGEPDAGDYADVA-GFCKSATLDEIRKHGHVLTPGRYVGAAEVEDDGEPFEE 497 Query: 502 ITWRKLSPLHQS-----FWLDILKPMMQQIYPYG 530 R + Q ++ ++++ + Sbjct: 498 KMARLAAQWRQQRDEAAKLDAAIEANLKELGFWE 531 >gi|37680392|ref|NP_935001.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] gi|37199139|dbj|BAC94972.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] Length = 499 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 114/533 (21%), Positives = 202/533 (37%), Gaps = 68/533 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +W A + G +D+ I P +R+ + E+ Sbjct: 5 NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFEDAMEQVG------ 58 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + + + + + L+ I + IF D ++ Sbjct: 59 -DEELAKGDMFHRIQIPANCHWKDVFAETKDIGQALKDSFRGIELENPQLHGIFGDASWT 117 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + +F+ + L +V + M YE+LI+RF + ++ A +F TPR Sbjct: 118 NK-ERLSD-ELLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPR 175 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L +L P ++YDP CGTGG L + ++HV + G ++ Sbjct: 176 TIVRLMVNIL----------DPQANESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 GQE T A+ + + E I +G TL F + F ++ Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQEDFE-------IVRGDTLRDPKFLKNDQLENFDCVIA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF K + GR GL ++G ++ H+ L GR A Sbjct: 276 NPPFSLKEWGY-----DYWTSDPYGRASFGLAPKTNGDFAWVQHMFASLNDE----GRMA 326 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL LF G A E +IR LL+ + I A++ + ++LF+ T I + +L + EE Sbjct: 327 VVLPHGVLFRGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKVRPEE 383 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG--------------K 463 + V ++NA +++T G+ + +++ Q +I IY Sbjct: 384 HKDHVLIVNAEEIFTK----GRAQNTLSEPQADEIYGIYQKMRTKGPKVDDIEGVARWVP 439 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 S + + V +PL I + L + ++ + + L Sbjct: 440 HSEIEENDFNLNIARYVQKPLEEETISVEEALKDFQKKLSALEQAEQELEALL 492 >gi|329118872|ref|ZP_08247568.1| type I restriction-modification system DNA-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465063|gb|EGF11352.1| type I restriction-modification system DNA-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 577 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 100/566 (17%), Positives = 192/566 (33%), Gaps = 81/566 (14%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------------- 56 SL + +WK A+ L + ++ ++L L+ + + + Sbjct: 49 SLEDTLWKAADKLRSELDAANYKHIVLGLIFLKYISDTFAAQQRKILADLQNPENPLYLD 108 Query: 57 -EKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESY------- 103 Y + LE+ ++ Y F+ + + N Sbjct: 109 PALYESPEDYQAALEAELEERDYYTQDNVFWVPRPARWHEIAAAALLENGAELPWGGRFN 168 Query: 104 -IASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHPDT--VPDRV 154 + + DNA E + + R+ + L + + FS + Sbjct: 169 SVPALIDNAFDAVEKDNPRLKGVLERISGYGVRGDTLIGLIQLFSQNTFQSHGTLTAKDI 228 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + ++YE+ + RF + + TP+ +V L ALL +YDP Sbjct: 229 LGHVYEYFLGRFALAEGKRGGQYFTPKAIVSLIVALL-----------EPYQGRVYDPAM 277 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+GGF + + + +GQE T + M I LE + + + Sbjct: 278 GSGGFFIQTERFIRAHQGNTG---NISIYGQEKNRTTWKLAAMNMAIHGLEYNFGKGNA- 333 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 T + ++ + ++NPPF E G R+ G P + Sbjct: 334 -----DTFTAPQHLDQKMDFVMANPPFNAS------DWWSEELAG-DPRWQYGTPPEGNA 381 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + +L H+ + L GR A++L++ + SGE +IRR L++ DL+EA++ALP Sbjct: 382 NYAWLQHMLHHLAPA----GRMALLLANGSM--SSQSSGEGDIRRALIQADLVEAMIALP 435 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 LF T I +WIL K + +G+ I+A ++ +R + +I D Sbjct: 436 GQLFTNTQIPACIWILHKAKPQ--KGQTLFIDARNMGYLKDRA---QRDLAPADIERIAD 490 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL-----ARLEADITWRKLSP 509 Y + + R ++L A +++ K++ Sbjct: 491 TYHRWQKAD---RYQNQPAYCHAATTEEIARNDYVLTPGRYVGTVEAEADSEPFVEKMAR 547 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESF 535 L + + + E Sbjct: 548 LTKQLNEQFAQGAELEAQIKKNLEEL 573 >gi|91215848|ref|ZP_01252817.1| type I restriction-modification system methyltransferase subunit [Psychroflexus torquis ATCC 700755] gi|91185825|gb|EAS72199.1| type I restriction-modification system methyltransferase subunit [Psychroflexus torquis ATCC 700755] Length = 693 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 172/729 (23%), Positives = 305/729 (41%), Gaps = 111/729 (15%) Query: 12 ANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGSNIDL 69 + IW+ A+ L G K +DF K ++PF L +E L ++ V + Sbjct: 7 ESEIWETADLLRGAGIKTSDFPKYMMPFFALLMVESRLIRESKRMVDDGESQDNMDEFVE 66 Query: 70 ESFVKVAGY-SFYNTSEYSLSTLGSTNT--RNNLESYIASFSDNAKAIF--------EDF 118 ++ GY F SL + + + +SYI SF K + E F Sbjct: 67 IFQLEGLGYNDFVIREGKSLKDICKNDKTFDVDFQSYIKSFDAETKYLLGVDKGTEEEKF 126 Query: 119 -DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 D S L+K +L+ K +S I+L P + ++ + EH+ R++ +E A + Sbjct: 127 LDISGISGLLKKKRILFNTVKTWSAIDLTP--YNNSEITTLEEHIKRKWADISAETAGEQ 184 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP D++ L T L+ + ++YDPTCG G L + + + + Sbjct: 185 YTPDDIISLITELIATRIEDN-----EQFLSIYDPTCGGGNLLFGVEDKI-----NKEFN 234 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G++ +A+ + R I+ G+TL+ F KRF ++ Sbjct: 235 RPTSTFGEDWSDSLYALAK---------IESRFRQDSTIKYGNTLTDINFIEKRFDVIVA 285 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+G W+ K + +N RF LP ISDG LF H+ +LE G A Sbjct: 286 NPPYGVDWKGFKKDI----ENDTTERFID-LPSISDGQFLFTQHILYQLEDD----GFAV 336 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V + S LF+G AGSGES IR+ E D +EAI+ +PTD FF T I TYLW+ + K + Sbjct: 337 VVHNGSTLFSGDAGSGESNIRKHFFEQDWVEAIIQMPTDEFFNTGIYTYLWVFNKNKKAD 396 Query: 418 RRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 R+ KV L+NA+DL+ +++GKKR+ +N D R +I+ + + +++++ D F + Sbjct: 397 RKDKVMLLNASDLFEKLKKSKGKKRKKMNADNRAEIVKAFTDYKENEYTKIFDKWEFYFN 456 Query: 477 RIKV----------------------LRPLRMSFILDKTGLARLE--ADITWRKLSPLHQ 512 + + + S +D + + L+ + + ++ + Sbjct: 457 KQSIMLTNVDENGKSITMPTKENREGELVEQKSIKIDASSVLILDSFKENGMKAINQMET 516 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572 + + + +++ Y + + + K++ L + I + Sbjct: 517 TEYPEDEYQNLKEYYDKHYKNYVAEFNYKADAFAVLDTNGNAYTYNTSIETIIETTKKQV 576 Query: 573 PVTDVNGEWIPDT---------------------NL-TEYENVPY-------LESIQDYF 603 NG+ + +L +YE + Y ++I ++ Sbjct: 577 ETELGNGKIVVKASYKKATKTREAKIEVAVTLTKDLQKDYEIINYAPIEATNQQNIANFM 636 Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663 + ++ P YID VG E+NFN+ FY+ + R + I A+L +E Sbjct: 637 AKYITK--PFEYIDN-----------VVGVELNFNKVFYKSEILRTVSTITADLNSLEND 683 Query: 664 IATLLEEMA 672 + L +E+A Sbjct: 684 LQDLEKELA 692 >gi|189423916|ref|YP_001951093.1| N-6 DNA methylase [Geobacter lovleyi SZ] gi|189420175|gb|ACD94573.1| N-6 DNA methylase [Geobacter lovleyi SZ] Length = 492 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 110/466 (23%), Positives = 187/466 (40%), Gaps = 60/466 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L +++W A L G D+ + I P +R+ + Sbjct: 6 SQQELESYLWGAATLLRGLIDAGDYKQFIFPLLFFKRVSDVYDEEYQ-----------QA 54 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDN-AKAIFEDFDF 120 +D + F + + S + T N +++ I + + + IF D + Sbjct: 55 MDESGGDFAENHRFQIPAGFHWSDVRQTPKNVGMTIQTAMRAIEAANPDQLTGIFGDAPW 114 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL L + ++FS L VP+ + N YE LI++F + A +F T Sbjct: 115 TNK-ERLPD-ETLKDLIEHFSTQTLSVANVPEDELGNAYEFLIKKFADDSGHTAAEFYTN 172 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VVHL T LL P ++YDPTCGTGG L A+ V G ++ Sbjct: 173 RTVVHLMTQLL----------DPQPGESIYDPTCGTGGMLLSALAEVKRTGGEYRTLK-- 220 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296 +GQE T + + + +E I +G TL++ K+F L Sbjct: 221 -LYGQERNLMTSGIARMNLFLHGIE-------DFQIARGDTLAEPKLIEGDRLKQFDVIL 272 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K ++ + GR G P F H+ L GR Sbjct: 273 ANPPYSIKQWD-----RPAFESDKWGRNFLGTPPQGRADYAFFQHILKSLTKK----GRC 323 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AI+ LF E E+R ++ DL+EA++ L +LF+ + + + + + KT Sbjct: 324 AILWPHGVLFRNE----EQEMRAKMIAQDLVEAVIGLGPNLFYNSPMESCVVVCRRNKTG 379 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 ER+GKV I+A + T R + + + + +IL + + ++ Sbjct: 380 ERKGKVLFIDALNEVTRERA----QSFLKPEHQDRILAAFRNFQDD 421 >gi|28868301|ref|NP_790920.1| type I restriction-modification system subunit M [Pseudomonas syringae pv. tomato str. DC3000] gi|28851538|gb|AAO54615.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 576 Score = 317 bits (813), Expect = 4e-84, Method: Composition-based stats. Identities = 95/498 (19%), Positives = 183/498 (36%), Gaps = 67/498 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + + L +W A+ + + ++ ++L L+ + + R+ + K+ Sbjct: 50 TATSSTLQDLEKTLWATADKMRANMDPAEYKHIVLGLIFLKYISDSFAGRRAELERKFSD 109 Query: 62 FGGS------------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105 G + E F+ +L + + ++ I Sbjct: 110 AGDDYYLGGDDPTYLASELEERDYYKEVNVFWVPEPARWESLRAAAKQVDIGKRIDDALA 169 Query: 106 ---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEH 161 + + K I + + + G L ++ S I D ++ +YE+ Sbjct: 170 DIEAENPQLKNILDKRYARAQLPD----GKLGELVDMISIIGFSSDANKARDLLGQVYEY 225 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + +F S + F TP +V A+L +YDP CG+GG Sbjct: 226 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPHHG-----------KVYDPCCGSGGMFV 274 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + G + +GQE P T + + IR ++ + ++ + + Sbjct: 275 QSEKFIEAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGMDFNLGKEPA------DS 325 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 ++ + R + L+NPPF R+ G P + + +L H Sbjct: 326 FIRNQHSDLRADFVLANPPFNIS-------DWWHGSLDGDSRWVYGTPPQGNANYAWLQH 378 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L+ GRA IVL++ + + + E +IRR ++E D++E +VALP LFF T Sbjct: 379 MLFHLKSS----GRAGIVLANGSMSSS--QNSEGDIRRAMVEADVVEVMVALPGQLFFNT 432 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460 I LW L+ +K + G+V I+A L T+I + + D I + Sbjct: 433 QIPACLWFLAKQKNKRP-GEVLFIDARKLGTNISRV---QIELLDSDIESIAQTVANWRG 488 Query: 461 -----NGKFSRMLDYRTF 473 +G+ + D F Sbjct: 489 VPLEVDGEIAEYADVAGF 506 >gi|152979298|ref|YP_001344927.1| type I restriction-modification system, M subunit [Actinobacillus succinogenes 130Z] gi|150841021|gb|ABR74992.1| type I restriction-modification system, M subunit [Actinobacillus succinogenes 130Z] Length = 505 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 101/474 (21%), Positives = 180/474 (37%), Gaps = 56/474 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63 + + +W + G + IL L+ + + + +Y Sbjct: 6 NQDDINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYQNYQAEYGDVPELI 65 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFED-- 117 + E FV +FY E+ L + + K +F+D Sbjct: 66 EEMMKQERFVLPPQANFYYLYEHRFEAGNGERIDLALHAIEEANGTKLKDAGKSVFQDIA 125 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174 F+ +K +L ++ ++F+ EL ++ N YE+LI+ F + + A Sbjct: 126 FNTDKLGEEKQKNTILRELLEDFAKPELDLKPSRVGTLDIIGNAYEYLIKNFAASGGQKA 185 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L LL P + ++ DP CG+G L V Sbjct: 186 GEFYTPPEVSDLIAELL----------DPQIGDSICDPACGSGSLLMKCGRKVQQNYQS- 234 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290 +GQE T ++ M + + + I+ G T+ T K Sbjct: 235 ---KNYELYGQEAIGSTWSLAKMNMFLHSED-------NHRIEWGDTIRNPKLTDKQGNL 284 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F +NPPF ++A + + RF GLP + G F+ H+ L+ Sbjct: 285 LKFDIVTANPPFSLDKWGYEEAGQDRFQ-----RFVRGLPPKTKGDYAFISHMIATLKD- 338 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G GR +V+ LF G A E +IR+ L+E +L++A++ LP LF+ T I + I Sbjct: 339 --GTGRMGVVVPHGVLFRGAA---EGKIRQKLIEENLLDAVIGLPEKLFYGTGIPAAILI 393 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 KT++ V I+A+ + GK + + + +I Y +R+ + Sbjct: 394 FRKDKTDDS---VLFIDASQEF----KAGKNQNTLTSENITKIHRTYQARQAVE 440 >gi|307947316|ref|ZP_07662650.1| N-6 DNA methylase [Roseibium sp. TrichSKD4] gi|307769458|gb|EFO28685.1| N-6 DNA methylase [Roseibium sp. TrichSKD4] Length = 403 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 112/339 (33%), Positives = 173/339 (51%), Gaps = 29/339 (8%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + L IW A L G ++ + +V+LP T+LRR++ L PT+ V ++Y Sbjct: 27 SQNHDQLVGLIWNIANKLRGPYRPPQYRRVMLPLTVLRRMDLVLAPTKDKVLKQYAKLQA 86 Query: 65 SNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAI 114 ++ K+ G YN S+Y L N NL +YI FS AK I Sbjct: 87 QGHSEDAVHKILGKTASGDREQPLYNVSQYDFEKLLGDPNNIARNLVTYIEGFSPKAKDI 146 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 F F F + I +L+ A L+ I K F+ +LHPD V + M ++E L+R+F + +E Sbjct: 147 FSKFGFDAEIEKLDNANRLFMIIKEFTDPRVDLHPDRVNNLQMGYVFEELVRKFNEQANE 206 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A D TPR+V+ L L+ D+ ++ PG+ RT+YDPTCGTGG L+ + ++ + Sbjct: 207 EAGDHFTPREVIRLMAHLMYTEDEDVYT--PGIARTIYDPTCGTGGMLSVSEEYIREQNP 264 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFT 288 + + +GQE E++A+C + +LI+ D NI G TL S+D Sbjct: 265 QANL----ILYGQEYNAESYAICCSDLLIKDEPID-------NIHFGDTLGDGKSEDGHP 313 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 K+FHY ++NPPFG +W+ + V+KE L RFG Sbjct: 314 DKKFHYMMANPPFGVEWKTQQSIVQKELTRLVLSRFGAA 352 >gi|327460986|gb|EGF07319.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK1057] Length = 512 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 97/537 (18%), Positives = 207/537 (38%), Gaps = 55/537 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W A+ L G +++ KVI+ L+ + A E + + Sbjct: 12 MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G + + F+ + S + + + + + ++ Sbjct: 70 ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSKIGTVLDKAMREIEE--DNPSL 124 Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + ++ +L ++ F+ I+++ ++ YE+ I +F + + Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V +L +YDP CG+GG + + + + Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIKNHSGNIN 233 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L GQE +T + M+IR +++D + ++ DL + +Y Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + R+ G P S+ + ++ H+ + ++ G+ Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 +VL++ L SGE +IR+ ++E+DLIE I+ALP +LF+ I LW +S K Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 +++GK I+A ++ I K R +++ +++ D + + +NG F G+ Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSNEDIKKLADTFEAFQNGNF-----EDVKGF 442 Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 ++ + FIL +E + L + + + Sbjct: 443 CASVETAEIAKQDFILTPGRYVGIEDKEDDGEPFEEKMDRLTTELSELFTKSHKLED 499 >gi|134294136|ref|YP_001117871.1| N-6 DNA methylase [Burkholderia vietnamiensis G4] gi|134137293|gb|ABO53036.1| N-6 DNA methylase [Burkholderia vietnamiensis G4] Length = 528 Score = 316 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 102/547 (18%), Positives = 184/547 (33%), Gaps = 70/547 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67 L +W A+ L ++ ++L L+ + A R+ + + Sbjct: 3 QDLKKTLWAAADKLRASMDAAEYKHIVLGLIFLKYISDAFCERRAQLSAAFADESDDLFL 62 Query: 68 ---------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 E F+ + TL + + ++ I + + Sbjct: 63 PDATDHVVALEERDYYTMANVFWVPAVARWETLRAQAKQADIGVRIDAALEAIEADNARL 122 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + G L ++ S I ++ +YE+ + +F + Sbjct: 123 KGILDK----RFGRTQLEPGKLGELVDLISKIGFGEGHHAKDLLGEVYEYFLGQFATAEG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV + +L +YDP CG+GG + + G Sbjct: 179 KKGGQFYTPASVVRVLVEVLAPHQG-----------RVYDPCCGSGGMFVQSEKFIESHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE P T + + IR +D ++ + T +D R Sbjct: 228 GRAD---DISIYGQEANPTTWRLVAMNLAIRGFAADLGKEPA------DTFHRDQHPDLR 278 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + R+ G P + + +L H+ + L Sbjct: 279 ADYVLANPPFNISDWGGERLADDR-------RWAHGTPPAGNANYAWLQHILHHLSPHGQ 331 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A + S N + E +IRR ++E D+I+ +VALP LF T I LW L+ Sbjct: 332 AGVVLA---NGSMTSN---QNSEGDIRRAMVEADVIDVMVALPPQLFLNTQIPACLWFLT 385 Query: 412 NRKT----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460 K+ +RRG+V I+A L R+ +++ +I R Sbjct: 386 KDKSGAPIAGAKPGRDRRGEVLFIDARKLGRMESRVV---RVFDEEHISKIAGTVHRWRA 442 Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 +G+ Y G+ R +K+ +L EA ++ Sbjct: 443 DGEDGTDEPYADVPGFCRSVKLAEIAEHGHLLTPGRYVGAEATEDDDEVFDEKMERLTSQ 502 Query: 519 LKPMMQQ 525 L M + Sbjct: 503 LFEQMAK 509 >gi|84385717|ref|ZP_00988748.1| type I restriction-modification system methylation subunit [Vibrio splendidus 12B01] gi|84379697|gb|EAP96549.1| type I restriction-modification system methylation subunit [Vibrio splendidus 12B01] Length = 488 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 113/492 (22%), Positives = 197/492 (40%), Gaps = 55/492 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L ++W A L G D+ + I P +R+ + E A S+ Sbjct: 3 TQQDLEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRISDVYDE------EFENALADSD 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDN-AKAIFEDFDF 120 DLE + F + T N I + + + IF D + Sbjct: 57 GDLEYAAFAENHHFQVPEGAHWNDARETTVNIGLALQNAMRAIEKANPDTLEGIFGDASW 116 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ RL A +L + +++S L+ VPD + N YE+LI+ F + A +F T Sbjct: 117 TNK-ERLSDA-MLTNLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTN 174 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VV L T ++ P ++YDPTCG+GG L + H+ G ++ Sbjct: 175 RTVVKLMTMIM----------DPQPGESVYDPTCGSGGLLLNCALHLKGEGKEYRTLK-- 222 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE+ T A+ M + +E +I +G+TLS K+F+ L Sbjct: 223 -LYGQEINLLTSAIARMNMFMHGIE-------EFDIVRGNTLSNPGLLENDELKKFNVIL 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K K ++ GR G P F H+ + G GR+ Sbjct: 275 ANPPYSIKSWD-----RKAFESDPHGRNVWGTPPQGCADYAFQQHIQ---KSLDLGNGRS 326 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 + LF E+++RR ++E D +E ++ L +LF+ + + L I K E Sbjct: 327 ISLWPHGILFR----DAETDMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIE 382 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475 ++ K+ INA +N G ++ +I + Y++ F+ ++D + Sbjct: 383 SKKDKILFINAVKEVRQDKNIG----YLDQVHIDKIFNAYINFTSEENFAVLVDKQAVLD 438 Query: 476 RRIKVLRPLRMS 487 R+ + L + Sbjct: 439 RKANMAINLYIR 450 >gi|327384000|gb|AEA55475.1| type I restriction modification system protein [Lactobacillus casei LC2W] gi|327387192|gb|AEA58665.1| type I restriction modification system protein [Lactobacillus casei BD-II] Length = 538 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 122/576 (21%), Positives = 208/576 (36%), Gaps = 73/576 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53 M+E T A+ L + +W A+ L G +++ +L R L Sbjct: 1 MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100 V KY + +LE Y NT Y + L +T ++L Sbjct: 61 NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150 + + + + DFS A ++ + L + + + Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ + YE+LI +F S+ + A +F TPR V + ++ +RT+Y Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQR----NAGDNQVRTIY 236 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+G L + HV D ++ HGQEL T+ + +++ + D Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288 Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +++ G TLSKD + F + NPP+ W + K RF Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S FL+H L+ G IVL LF G E +IR+ LL ++ Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLMDNR 390 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+AI+ LP ++F T I T + IL KT V I+A+ + +N + + Sbjct: 391 IDAIIGLPANIFHSTGIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 ++I+ Y +R++ K++ + + P R + L Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIP-RYVDTFEPEPEIDLNQVKADL 502 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 K S + Q+ + E+ K Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQVNDQSKPEAHK 538 >gi|88856340|ref|ZP_01130999.1| type I restriction-modification system methylation subunit [marine actinobacterium PHSC20C1] gi|88814424|gb|EAR24287.1| type I restriction-modification system methylation subunit [marine actinobacterium PHSC20C1] Length = 507 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 104/463 (22%), Positives = 178/463 (38%), Gaps = 43/463 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGS 65 + L + +W A L G DF + P + + + + R AV + A Sbjct: 12 TQRQLESALWSAANALRGPVDAGDFKSFVFPVMFFKWISDSWDFQHRQAVSDFGDALTPE 71 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + +N Y ++ + L + +F D ++S+T Sbjct: 72 IEADYHPFLIPDECHWNDV-YDVTVNTGSKLGKTLLRIQEANPGKLDGVFGDVNWSNT-D 129 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 RL ++ L K+ F + L P+ ++ YE+L+R F + A +F TPR VVH Sbjct: 130 RLPES-ALTKLLDAFDKLTLDPNNASGDMLGAGYEYLLREFAEASGKKAGEFFTPRHVVH 188 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L LL P ++ DP CG+ G L + +N V G + +GQ Sbjct: 189 LLVKLL----------QPQSGDSVCDPACGSAGMLVETVNAVDASGGDSRTL---TLYGQ 235 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPP 300 E T A+ + + E S I +G T + + +F ++NPP Sbjct: 236 EFNLTTAAMARMNLYLHGQE-------SFQIMRGDTFREPKLLDEAGQLRKFDVVIANPP 288 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F + +K G +P ++G ++ H+ + ++ GRA I++ Sbjct: 289 FSLRNWGADMWARDPYKRAIGG----EVPPPANGDWAWIQHMVSTIKDDT---GRAGIIM 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 LF G E+ IR + L+EA++ LPT+LF+ T+I + I K ER Sbjct: 342 PHGALFRGGK---EAAIREHFVRTGLLEAVIGLPTNLFYSTSIQVCILIFRKNKLAERVN 398 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 KV I+A L G + ++ I Y + + Sbjct: 399 KVMFIDAKSLSVP----GTNQNTMSVANIEAIDSAYKTGRDID 437 >gi|325924114|ref|ZP_08185679.1| type I restriction system adenine methylase HsdM [Xanthomonas gardneri ATCC 19865] gi|325545416|gb|EGD16705.1| type I restriction system adenine methylase HsdM [Xanthomonas gardneri ATCC 19865] Length = 525 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 99/507 (19%), Positives = 184/507 (36%), Gaps = 74/507 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + ++ +W + G + + +L L+ + + + K+ Sbjct: 1 MNKTDIAQDTINAAVWTACDTFRGTVDPSVYKDYVLTMLFLKYVSDVWQDHYDDYKTKHG 60 Query: 61 A---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + E FV +FY + L + + + +F+D Sbjct: 61 NKPGLIEELLKNERFVLPHRANFYTLYDQRHRPGNGERIDTALHAIEDANLGKLRDVFQD 120 Query: 118 --FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSE 172 F+ + +K LL + ++F+ L+ ++ N YE+LI+ F S + Sbjct: 121 ISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNFASSSGK 180 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP +V L L+ P + DPTCG+G L + + Sbjct: 181 KAGEFYTPPEVSALMARLM----------DPQQGDEICDPTCGSGSLLLKCGRLIRERTG 230 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 K +GQE T A+ M + + + I+ G T+ Sbjct: 231 SGK----YALYGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPKLLDGER 279 Query: 290 ------------------------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 K F ++NPPF + + RF Sbjct: 280 WDPFAAARGKNAKTHGSLTKPQTLKHFDIVVANPPFSL-----EKWGHDTAEVDPHDRFR 334 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 GLP + G F++H+ ++ GR A+V+ LF G A E IR+ L+E + Sbjct: 335 RGLPPRTKGDYAFILHMIEVMKPKS---GRMAVVVPHGVLFRGAA---EGRIRQKLIEEN 388 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 L++ ++ LP LF+ T I + + +K ++ KV I+A+ + GK + ++ Sbjct: 389 LLDVVIGLPEKLFYGTGIPAAVLVFRTKKKDK---KVLFIDASRQYQD----GKNQNLLR 441 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRT 472 + ++ILD +R+N L Sbjct: 442 ESDLQRILDTVQARQNVDKYAYLASPD 468 >gi|134045655|ref|YP_001097141.1| type I restriction-modification system, M subunit [Methanococcus maripaludis C5] gi|132663280|gb|ABO34926.1| type I restriction-modification system, M subunit [Methanococcus maripaludis C5] Length = 494 Score = 316 bits (810), Expect = 8e-84, Method: Composition-based stats. Identities = 106/541 (19%), Positives = 197/541 (36%), Gaps = 70/541 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + A++ +WK + G + IL ++ L + Sbjct: 1 MKTNQATINAILWKACDTFRGTINSDQYKDYILTMLFVKYLSD------YYKEKLEEYKE 54 Query: 64 GSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------I 114 + K + F + + NL I S + + + Sbjct: 55 KYGDKEDRIQKSLSREKFILDESCTFEYIYKNRNAENLGEIINSALERIEEDNKAKLEGV 114 Query: 115 FEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHP---DTVPDRVMSNIYEHLIRRFGS 168 F + DF+S E+ LL + +F+ +L + V+ + YE++I F S Sbjct: 115 FRNIDFNSEAMLGKTKERNALLKHLLDDFNDPKLDLRPSKLAGNDVIGDSYEYMIAYFAS 174 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + +F TP V L L+ SP +YDPTCG+G L A V Sbjct: 175 DAGKKGGEFFTPSQVSRLVAKLV----------SPKSGNRIYDPTCGSGSLLIKASKEVP 224 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 D +GQE +T+A+C M + ++ I+ G T+ L Sbjct: 225 DNN--------FQIYGQEKNGQTYALCRMNMFLHEID-------DAKIEWGDTIRNPLHL 269 Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + +F ++NPPF + +N RFG G+P S G F+ H+ Sbjct: 270 ENDSLMKFDVVVANPPFSLD-----KWGDDYAENDPYKRFGYGIPPKSKGDYAFVEHMVY 324 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 N G +VL LF G E +IR L+ ++ ++A++ LP +LFF T I Sbjct: 325 S----ANENGTVGVVLPHGVLFRGA---SEGKIREGLINDNYLDAVIGLPQNLFFGTGIP 377 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463 + + K V I+A+ + GK + ++ D +I++ Y +R++ + Sbjct: 378 ACILVFKKNK---ITNDVIFIDASKEFE----SGKNQNVLRDLDIEKIVETYKNRQDIEK 430 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +S + + P + ++ + + K+ + ++ K + Sbjct: 431 YSHVASLEEIRENDYNLNIPRYVDTFEEEEPVDLNQVKTDISKIEGELKDIQKEMDKYLD 490 Query: 524 Q 524 + Sbjct: 491 E 491 >gi|126665439|ref|ZP_01736421.1| putative type I restriction-modification system, M subunit [Marinobacter sp. ELB17] gi|126630067|gb|EBA00683.1| putative type I restriction-modification system, M subunit [Marinobacter sp. ELB17] Length = 533 Score = 316 bits (810), Expect = 8e-84, Method: Composition-based stats. Identities = 95/487 (19%), Positives = 186/487 (38%), Gaps = 67/487 (13%) Query: 1 MTEFTGSAA----SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M++ + S + +W A+ L G + +++ V+L L+ + E + A+ Sbjct: 1 MSKQSSSVKKNTRTFEQSLWDTADKLRGTVESSEYKHVVLSLIFLKFVSDKFEARKQALI 60 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLES---YIASFSD 109 + ++ FY +TL + +++ I + Sbjct: 61 AEGQEAYVDMVE----FYTMKNVFYLPEHARWNTLQKQAKQDDIAIKIDTALYAIEKLNP 116 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH----PDTVPDRVMSNIYEHLIRR 165 + K D FS + K L N + + PD + ++ +YE+ + + Sbjct: 117 SLKGALPDNYFSRMGLEVSKLAALIDSINNIATVSDQSSAGPDGNEEDLVGRVYEYFLGK 176 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + +G +F TP+ +V+L ++ +YDP CG+GG ++ Sbjct: 177 FAATEGKGGGEFYTPKCIVNLLAEMI-----------EPYQGKIYDPCCGSGGMFVQSVK 225 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + + K + +GQE T+ + + IR + S+ + T K+ Sbjct: 226 FLRNHEGNQK---DISIYGQEYTATTYKLAKMNLAIRGIASNLGDVPA------DTFFKN 276 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLAN 344 + + ++NPPF K + D + R+ G P + + +++H+ + Sbjct: 277 QHPDLKADFIMANPPFNMKAWRGAD------ELSTDPRWAGYDAPPTGNANYAWILHMVS 330 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL G A + S SGE IR+ L+ENDL++ ++ALP LF+ T I Sbjct: 331 KLSAQGTAGFVMA---NGSM---STNTSGEGVIRQKLIENDLVDCMIALPGQLFYTTQIP 384 Query: 405 TYLWILSNRKTE------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LW ++ K R G+ I+A ++ + I K + D +I Sbjct: 385 VCLWFVTKNKKAQAIAGHSDSNHRNREGETLFIDARNMGSMISRTHK---ELTADDIAEI 441 Query: 453 LDIYVSR 459 Y + Sbjct: 442 TRTYHAW 448 >gi|91785554|ref|YP_560760.1| Type I restriction-modification system, M subunit [Burkholderia xenovorans LB400] gi|91689508|gb|ABE32708.1| Type I restriction-modification system, M subunit [Burkholderia xenovorans LB400] Length = 519 Score = 316 bits (810), Expect = 8e-84, Method: Composition-based stats. Identities = 100/540 (18%), Positives = 190/540 (35%), Gaps = 63/540 (11%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65 + +W A+ + ++ ++L L+ + R+ + ++ Sbjct: 2 LDDIKKTLWATADKQRANMDAAEYKHIVLGLIFLKYISDTFAGRRAELTRRFADENDEYF 61 Query: 66 ----------NIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFS 108 + F+ +L T+ ++ I + + Sbjct: 62 LRECDDELLAEELEDRDYYREVNVFWVPETARWESLRSAAKQTDIGKRIDEALAEIEAEN 121 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFG 167 K I + S + G L ++ S I D V+ +YE+ + +F Sbjct: 122 PKLKGILDKRYARSQLPD----GKLGELVDLISTIGFGEDASHARDVLGQVYEYFLGQFA 177 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + F TP +V A+L +YDP CG+GG + + Sbjct: 178 SAEGKKGGQFYTPASIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEKFI 226 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + +GQE P T + + IR ++ + R+ + T ++ Sbjct: 227 EAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDYNLGREPA------DTFVRNQH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 R + L+NPPF R+ G P + + +L H+ L+ Sbjct: 278 PDLRADFVLANPPFNVS-------DWWHGSLEGDPRWVYGTPPQGNANYAWLQHMLYHLK 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRA IVL++ + + + E +IRR +++ D++E +VALP LFF T I L Sbjct: 331 P----NGRAGIVLANGSMSSS--QNSEGDIRRAMVDADVVEVMVALPGQLFFNTQIPACL 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 W L+ +KT +G+V I+A L + I + + D+ +I + + + Sbjct: 385 WFLAKQKTTR-KGEVLFIDARKLGSMISRV---QTELTDEIIERIANTVAAWRGEAIDGV 440 Query: 468 LDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +Y GY R +K+ +L E + ++L M + Sbjct: 441 GEYADVPGYCRSVKLAEIAEHGHVLTPGRYVGAEKVEDDDEAFVEKMQKLTEMLGEQMAK 500 >gi|220911869|ref|YP_002487178.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6] gi|219858747|gb|ACL39089.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6] Length = 543 Score = 316 bits (810), Expect = 9e-84, Method: Composition-based stats. Identities = 95/483 (19%), Positives = 177/483 (36%), Gaps = 67/483 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK A+ L G + + VIL L+ + A + R+ ++ + A G + Sbjct: 12 STMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRNQIQAELEADGLN 71 Query: 66 NIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLES-----YIASFSDNAKAIF 115 + + + F+ + S L I D+A + Sbjct: 72 EEQIAQLIDDVDEYTSRGVFWVSGRARWSYLAENAKGLPAMDGAAPKSIGLLIDDAMDLI 131 Query: 116 --EDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRF 166 ++ ++T+ R+ L ++ F+ ++ +YE+ + +F Sbjct: 132 MTDNKSLAATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGASKARDLLGEVYEYFLEKF 191 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + +F TP L + +YDP CG+GG A Sbjct: 192 AKAEGKRGGEFYTP-----------AGVVRVLVEVLEPHRGRVYDPCCGSGGMFVQAEKF 240 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + +GQEL T + + I L ++ + G T ++D Sbjct: 241 LEAHNMEG---SDISVYGQELNERTWRMAKMNLAIHGLNANLAA------RWGDTFARDQ 291 Query: 287 FTGKRFH----YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + + ++NPPF K ++ R+ G+P + + ++ H+ Sbjct: 292 HPELTGNTGADFIMANPPFNIKVWS---------RSESDPRWKYGVPPAGNANYAWIQHI 342 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 +KL + G A + S N GE EIR L+E DL+ +VALPT LF T Sbjct: 343 ISKLAPGGSAGVVMA---NGSMSSNSG---GEGEIRAQLVEADLVSCMVALPTQLFRSTG 396 Query: 403 IATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 I W + KT +R G+V I+A +L + R ++D+ +I + Y Sbjct: 397 IPVCTWFFAKDKTAGKKGSIDRTGQVLFIDARNLGYMVDRAE---RALSDEDITKIANTY 453 Query: 457 VSR 459 + Sbjct: 454 HAW 456 >gi|325690777|gb|EGD32778.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK115] Length = 513 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 191/467 (40%), Gaps = 49/467 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W A+ L G +++ KVI+ L+ + A E + + Sbjct: 12 MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G + + F+ + S + + + + + ++ Sbjct: 70 ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124 Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + ++ +L ++ F+ I+++ ++ YE+ I +F + + Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V +L +YDP CG+GG + + + + Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIKNHSGNIN 233 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L GQE +T + M+IR +++D + ++ DL + +Y Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + R+ G P S+ + ++ H+ + ++ G+ Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 +VL++ L SGE +IR+ ++E+DLIE I+ALP +LF+ I LW +S K Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 +++GK I+A ++ I K R +D+ +++ D + + +NG Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSDEDIKKLADTFEAFQNG 434 >gi|294495710|ref|YP_003542203.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219] gi|292666709|gb|ADE36558.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219] Length = 499 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 104/483 (21%), Positives = 192/483 (39%), Gaps = 56/483 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E S L ++W A L G ++ +I P +R+ + E+ Sbjct: 1 MSEP-ISQQQLEQYLWGAATLLRGVIDPGEYKSIIFPLMFFKRISDVYDEEYQQALEE-- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS------TNTRNNLESYIASFSDNAKAI 114 S D E + F + + + + + ++ + D I Sbjct: 58 ----SGGDQEYAEFAENHRFQVPAGAHWNDVRNVSINVGQAIKTAMDDIEKANPDKLTGI 113 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F D ++++ RL +L + ++FS + L VP + YE+LI++F + A Sbjct: 114 FGDANWTNK-NRLSD-NILIDLIEHFSTVNLSITNVPQDEFGSGYEYLIKKFADDSGHTA 171 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F T R VV L + ++ P ++YDPTCG+GG L +A + G + Sbjct: 172 AEFYTNRTVVRLMSLIV----------DPKSGESIYDPTCGSGGMLLNAALLAKEKGQEY 221 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290 + + +GQE+ T A+ M + E + +G TLS F K Sbjct: 222 R---NIKLYGQEINIITSAIARMNMFLHGFEDFY-------VIRGDTLSNPAFVEDDRVK 271 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 +F ++NPP+ K + R G P F H+ ++ Sbjct: 272 KFDIVIANPPYSIK-----KWNRDGWIHDSWNRNTYGTPPQGCADYAFFQHIIASMKEDT 326 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GR AI+ L E ++R+ ++ENDLIE ++ L +LF+ +++ + + I Sbjct: 327 ---GRCAILYPHGVLERNN----EKKMRKEIIENDLIECVIGLGKNLFYNSSMKSCIVIC 379 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469 + K E R+ K+ I+A D + + K + + +I Y ++ + F+ +D Sbjct: 380 NKNKPENRKNKILFIDAKDEISINTTQAK----LESEHIDKIHAAYSDFKSIEKFANAVD 435 Query: 470 YRT 472 Sbjct: 436 IEE 438 >gi|153829663|ref|ZP_01982330.1| type I restriction-modification system, M subunit [Vibrio cholerae 623-39] gi|148874839|gb|EDL72974.1| type I restriction-modification system, M subunit [Vibrio cholerae 623-39] Length = 510 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 104/480 (21%), Positives = 180/480 (37%), Gaps = 57/480 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + + +W + G D+ +IL L+ + + + +Y Sbjct: 1 MNE-NINQDRINKALWDSCNIFRGTTDADDYIDLILTMLFLKYISDVWQDHYDGYKAQYG 59 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113 + E F SFY E+ L + + + Sbjct: 60 DASELIEETVQYERFALPKNASFYYLYEHRNEPGNGKRIDQALHAIEEANGTKLRDSGKS 119 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168 +F+D F+ +K +L + + F+ EL+ V+ N YE+LI+ F Sbjct: 120 VFQDISFNTDRLGEDKQKNNILRYLLEVFAKPELNLKPSRVSTLDVIGNAYEYLIKNFAV 179 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + +F TP +V L T LL P ++ DPTCG+G L N V Sbjct: 180 SSGKKSGEFYTPPEVSDLITELL----------EPQPGDSICDPTCGSGSLLIKCGNKVR 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 +GQE+ T + M + + + I+ G T+ Sbjct: 230 TKFDS----KNYALYGQEMNGSTWSRAKMNMFLHGED-------NHKIEWGDTIRNPKLL 278 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K F +NPPF +D +N + RF G+P + G F++H+ Sbjct: 279 DKNGDLMLFDIVAANPPFSVDQWGHED-----AENDKFNRFRRGIPPKTKGDYAFILHMI 333 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ GR +++ LF G S ES+IR+ L++ +L++A++ LP LF+ T I Sbjct: 334 ETLKPKT---GRMGVIVPHGVLFRG---STESKIRQQLIDENLLDAVIGLPDKLFYGTGI 387 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I K V I+A+ + GK + ++ D +I+ Y + EN Sbjct: 388 PAVILIFKKEK---VDDNVLFIDASHEF----KPGKNQNQLSADNIAKIVATYKANENVD 440 >gi|325696152|gb|EGD38043.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK160] gi|328946725|gb|EGG40863.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK1087] Length = 513 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 97/537 (18%), Positives = 206/537 (38%), Gaps = 55/537 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W A+ L G +++ KVI+ L+ + A E + + Sbjct: 12 MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G + + F+ + S + + + + + ++ Sbjct: 70 ---GYGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124 Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + ++ +L ++ F+ I+++ ++ YE+ I +F + + Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V +L +YDP CG+GG + + + + Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L GQE +T + M+IR +++D + ++ DL + +Y Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + R+ G P S+ + ++ H+ + ++ G+ Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 +VL++ L SGE +IR+ ++E+DLIE I+ALP +LF+ I LW +S K Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 +++GK I+A ++ I K R +D+ +++ D + + +NG G+ Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSDEDIKKLADTFEAFQNGNL-----EDVKGF 442 Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 ++ + FIL +E + L + + + Sbjct: 443 CASVETAEIAKQDFILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELFTKSHKLED 499 >gi|327490259|gb|EGF22047.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK1058] Length = 512 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 191/467 (40%), Gaps = 49/467 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W A+ L G +++ KVI+ L+ + A E + + Sbjct: 12 MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G + + F+ + S + + + + + ++ Sbjct: 70 ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124 Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + ++ +L ++ F+ I+++ ++ YE+ I +F + + Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V +L +YDP CG+GG + + + + Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L GQE +T + M+IR +++D + ++ DL + +Y Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + R+ G P S+ + ++ H+ + ++ G+ Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 +VL++ L SGE +IR+ ++E+DLIE I+ALP +LF+ I LW +S K Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 +++GK I+A ++ I K R +D+ +++ D + + +NG Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSDEDIKKLADTFEAFQNG 434 >gi|124265198|ref|YP_001019202.1| type I restriction-modification system, M subunit [Methylibium petroleiphilum PM1] gi|124257973|gb|ABM92967.1| type I restriction-modification system, M subunit [Methylibium petroleiphilum PM1] Length = 528 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 95/471 (20%), Positives = 174/471 (36%), Gaps = 63/471 (13%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS---- 65 L +W A+ L + ++ ++L L+ + + R+ + ++ Sbjct: 4 DLKRTLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFQARRTELTARFADPADEYHLD 63 Query: 66 ---------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSD 109 ++ + + A F+ + S + ++ I + + Sbjct: 64 GATPADIAAELEDRDYYREA-NVFWVPEAARWEAIRSAAKQPDIGKRIDDALSLIEAENP 122 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168 K I + + + G L ++ S I V+ +YE+ + F S Sbjct: 123 KLKGILDKRFARAQLPD----GKLGELVDLVSTIGFGESAATARDVLGQVYEYFLGMFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + F TPR +V A+L +YDP CG+GG + + Sbjct: 179 AEGKRGGQFYTPRSIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEEFIL 227 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G + GQE P T + + IR ++ + R+ + T +K+ F Sbjct: 228 SHG---GKLGDVAIFGQEANPTTWRLAAMNLAIRGIDFNLGREPA------DTFTKNQFP 278 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 R + L+NPPF R+ G P + + +L H+ + L+ Sbjct: 279 DLRADFILANPPFNIS-------DWWHASLTGDARWHYGDPPQGNANYAWLQHMLHHLKP 331 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GGRA IVL++ + + + E +IR +E D++E ++ALP LFF T I LW Sbjct: 332 ----GGRAGIVLANGSMSSS--QNNEGQIRAATVEADVVEVMIALPGQLFFNTQIPACLW 385 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 L K + RG+V I+A L T I + + D+ +I + Sbjct: 386 FLVKDKRQR-RGEVLFIDARKLATMISRV---QCELKDEVIERIAGTVAAW 432 >gi|78189087|ref|YP_379425.1| type I restriction-modification system specificity subunit [Chlorobium chlorochromatii CaD3] gi|78171286|gb|ABB28382.1| type I restriction-modification system specificity subunit [Chlorobium chlorochromatii CaD3] Length = 527 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 99/555 (17%), Positives = 193/555 (34%), Gaps = 70/555 (12%) Query: 1 MTEFTGSAAS--------LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52 M + + L +WK A+ L + ++ ++L L+ + + E Sbjct: 1 MAKQKATLRQTQGKQEEPLEKQLWKTADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELY 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + ++ + E A F+ + + L S + I F D+A Sbjct: 61 AKLQAEEANGADPEDKDEY---KAENVFFVPQDARWNYLQSKAKQPE----IGKFVDDAM 113 Query: 113 AIFEDFD--FSSTIARLE-----KAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164 + E + + ++ L ++ I L V+ +++E+ + Sbjct: 114 DVIEKENASLKGVLPKVFARQNLDPTSLGELIDLVGNIALGDAKARSADVLGHVFEYFLG 173 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + F TPR VV L +L ++DP CG+GG + Sbjct: 174 EFALAEGKKGGQFYTPRSVVELLVEML-----------EPYKGRVFDPCCGSGGMFVHSE 222 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 V + + +GQE T +C + IR ++S + ++ + Sbjct: 223 TFVTEH---QGKVNDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNNEG-----SFLN 274 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + Y ++NPPF GR+ G P + + ++ H Sbjct: 275 DAHKDLKADYIIANPPFNVSDWGGDLMRS-------DGRWQYGTPPTGNANFAWMQHFIY 327 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G+A +VL+ L + SGE +IR+ L+EN LI+ IV LP LF T I Sbjct: 328 HLAP----NGQAGVVLAKGALTS--KTSGEGDIRKALVENGLIDCIVNLPAKLFLNTQIP 381 Query: 405 TYLWIL---------SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 LW L +N K +R ++ I+ +L I + R ++ + +I Sbjct: 382 AALWFLRRDAKFFVSTNGKFRDRSNEILFIDTRNLGHLINR---RTRELSKEDIYKIAST 438 Query: 456 YVSRENGKFSRMLDYRT--FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 Y + + G+ + + + + ++L L D + Sbjct: 439 YHAWRTLPEALNGSAYADILGFCASVAISKVAELDYVLTPGRYVGLPDDEDDFDFAERFT 498 Query: 513 SFWLDILKPMMQQIY 527 + ++ + ++ Sbjct: 499 ALKAELEMQLQEEAQ 513 >gi|227533323|ref|ZP_03963372.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189042|gb|EEI69109.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 538 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 125/576 (21%), Positives = 215/576 (37%), Gaps = 73/576 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53 M+E T A+ L + +W A+ L G +++ +L R L Sbjct: 1 MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100 V +KY + +LE Y NT Y + L +T ++L Sbjct: 61 NVTQKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150 + + + + DFS A ++ + L + + + Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ + YE+LI +F S+ + A +F TPR V + ++ +A K+ +RT+Y Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRTIY 236 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+G L + HV D ++ HGQEL T+ + +++ + D Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288 Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +++ G TLSKD + F + NPP+ W + K RF Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S FL+H L+ G IVL LF G E +IR+ LL ++ Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+AI+ LP ++F T+I T + IL KT V I+A+ + +N + + Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 ++I+ Y +R++ K++ + + P R + L Sbjct: 444 VNIQKIVTTYQNRQDVDKYAHVASPAEIKANDYNLNIP-RYVDTFEPEPEIDLNQVKADL 502 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 K S I + Q+ + E+ K Sbjct: 503 KQLDEEISQNEQIFNELASQLVTTQVNDQSKPEAHK 538 >gi|308270633|emb|CBX27245.1| hypothetical protein N47_A12740 [uncultured Desulfobacterium sp.] Length = 491 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 106/478 (22%), Positives = 192/478 (40%), Gaps = 55/478 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +++W A L G DF + I P +R+ + A S Sbjct: 2 TKKQLEDYLWGAANILRGMIDAADFKQYIFPLLFFKRISDVWDEEYQT------ALNESG 55 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDN----AKAIFEDFDF 120 DL+ + F + + L+ I+ +F D + Sbjct: 56 NDLDYAGFRENHRFQIPKGCHWEDVRKKTIDVGAALQKAISGIEKANFEMLHDVFGDAQW 115 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ R+ +L + ++FS ++L VP +M YE+LI++F + A +F T Sbjct: 116 TNK-RRMSDEKML-DLIEHFSQMDLTVSNVPHDIMGEGYEYLIKKFADDSGHTAAEFYTN 173 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R VV L T + P ++YDPTCG+GG L ++ H+ + G ++ Sbjct: 174 RTVVKLMTQI----------TDPQSAESIYDPTCGSGGILLSSVLHLKERGKEYRNLK-- 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYCL 296 +GQEL T A+ M + ++ I QG TL K+F + Sbjct: 222 -LYGQELNLITSAIARINMFMHNVDEFL-------IVQGDTLESPQILENDELKQFDVIM 273 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ K K + N GR G P F H+ L+ GR+ Sbjct: 274 ANPPYSVKRWNQKKWM-----NDPFGRNIWGTPPQGCADYAFQQHIMKSLKPDT---GRS 325 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 ++ LF ES+IRR ++E D ++A++ L +LF+ +++ + L + +K + Sbjct: 326 VVLWPHGVLFR----DAESQIRRKMIEEDYVDAVIGLGKNLFYNSSMESCLLVCRMKKPK 381 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 ER+GK+ I+A + + ++I D Y + + F++++ + Sbjct: 382 ERKGKIIFIDAKQELRIEKT----NAWLELQHIKKIADAYWKFKEAEGFAKVMSNKEV 435 >gi|324990377|gb|EGC22315.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK353] Length = 538 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 103/488 (21%), Positives = 182/488 (37%), Gaps = 64/488 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE---CALEPTRSAVREKYLAF 62 +A + +W A L G +++ ILPF R L E++ Sbjct: 2 STANDITTKLWAMANKLRGTMDASEYKNYILPFMFYRYLSENQDVYLA--QNGLEEFYDV 59 Query: 63 GGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTN-----TRNNLESYIASFSDNAK---- 112 + ++ Y EY+ L + ++ + SF AK Sbjct: 60 IDDEEQEDYLEDISSNLGYAIKPEYTWGRLVAKIENHRIKASDFQDMFDSFETQAKRNPM 119 Query: 113 ------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 +F D + T + E+A L I D ++ ++YE+LI Sbjct: 120 AEQDFANVFSDINLGDTRLGSSTNERAKALNDIVLMIHEFSFK-DESGRDILGDVYEYLI 178 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 +F + + +F TP +V + L+ + +YDPT G+G L Sbjct: 179 GQFAANAGKKGGEFYTPHEVSQILAKLVTVDAKENDDQ-----FRVYDPTMGSGSLLLTV 233 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + K + +GQEL T+ + +++ + N+++G TL Sbjct: 234 QKEL----PEGKREGSVAFYGQELNTTTYNLARMNLMMHGVNYRNM-----NLKRGDTLD 284 Query: 284 KDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 D ++ F ++NPP+ +KWE K + RF G+ S Sbjct: 285 TDWPFAEKDGIQLPLKFDAVVANPPYSQKWE------IKSIDRSKDSRFKFGVAPASKAD 338 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H L G AIVL LF G A E +IR+ +++ +L+ A++ LP Sbjct: 339 YAFILHGLYHL----ESTGTMAIVLPHGVLFRGAA---EGKIRKKIIDENLLHAVIGLPA 391 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T+I T + + RK V I+ + GK + + D +I++ Sbjct: 392 NLFYGTSIPTCVLVFKGRKARGECSDVLFIDGASDFEK----GKNQNKLTADNITKIIET 447 Query: 456 YVSRENGK 463 Y RE+ Sbjct: 448 YHEREHVD 455 >gi|121610070|ref|YP_997877.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] gi|121554710|gb|ABM58859.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] Length = 518 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 102/490 (20%), Positives = 199/490 (40%), Gaps = 68/490 (13%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + + +L ++K A+ L G+ + +D+ V L L+ + A E + + Sbjct: 1 MAQNDNNGGNLGFEAELFKTADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHAQLL-- 58 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111 + + +A F+ E S L + ++++ + I +++ Sbjct: 59 ---AEDAAAAEDKDEYLADNIFWVPREARWSHLQANAKQSSIGTLIDDAMRAIERDNESL 115 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170 K + + ++ +L ++ SGI L+ + V+ +YE+ + +F Sbjct: 116 KGVLPKDYARPALNKV----MLGELIDLISGIALNEGNDKSKDVLGRVYEYFLGQFAGAE 171 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TPR VV +L +YDP CG+GG + VA+ Sbjct: 172 GKRGGEFYTPRSVVRTLVEML-----------EPYTGRVYDPCCGSGGMFVQSEKFVAEH 220 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G + +GQE T + + +R ++SD + + + KD Sbjct: 221 GGRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSDIKWNNEG------SFHKDELRDL 271 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + L+NPPF + E R+ G P + + +L H+ + L Sbjct: 272 KADFILANPPFNISDWGG-------GRLREDVRWAFGAPPAGNANYAWLQHIFHHLSPH- 323 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G A +VL++ + SGE +IR+ ++E ++++ +VALP LF+ T I LWIL Sbjct: 324 ---GFAGVVLANGSM--SSQQSGEGDIRKAMIEANVVDCMVALPGQLFYSTQIPACLWIL 378 Query: 411 SNR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-- 459 S K +RRG+V I+A + + RR + +++ +I Y + Sbjct: 379 SKDRSNGLVKKTKLRDRRGEVLFIDARKMGVLVDRT---RRELTNEEIGRIAATYHAWRG 435 Query: 460 --ENGKFSRM 467 + G++S + Sbjct: 436 EADAGEYSDI 445 >gi|324993827|gb|EGC25746.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK405] gi|324994852|gb|EGC26765.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK678] gi|327474702|gb|EGF20107.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus sanguinis SK408] Length = 512 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 96/537 (17%), Positives = 206/537 (38%), Gaps = 55/537 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W A+ L G +++ KVI+ L+ + A E + + Sbjct: 12 MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G + + F+ + S + + + + + ++ Sbjct: 70 ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSKIGTVLDKAMREIEE--DNSSL 124 Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + ++ +L ++ F+ I+++ ++ YE+ I +F + + Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V +L +YDP CG+GG + + + + Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L GQE +T + M+IR +++D + ++ DL + +Y Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + R+ G P S+ + ++ H+ + ++ G+ Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 +VL++ L SGE +IR+ ++E+DLIE I+ALP +LF+ I LW +S K Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 +++GK I+A ++ I K R +++ +++ D + + +NG G+ Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSNEDIKKLADTFEAFQNGNL-----EDVKGF 442 Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 ++ + FIL +E + L + + + Sbjct: 443 CASVETAEIAKQDFILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELFTKSHKLED 499 >gi|194333150|ref|YP_002015010.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271] gi|194310968|gb|ACF45363.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271] Length = 547 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 129/578 (22%), Positives = 223/578 (38%), Gaps = 85/578 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M G+ SL ++IW+ A + G + ILP +RL + + + + Sbjct: 1 MVNNNGNRKSLESWIWEAACSIRGAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVG 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLESY---IASFSD 109 + + + K+ FY +S+ S + +Y IA + Sbjct: 61 SRKKAFQLARADHKLV--RFYLPLIPDDPEQPVWSVIRKLSDRIGEGVTTYMRAIARENP 118 Query: 110 NAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + I + DF++T R L + + S L D V ++ YE+LIR+F Sbjct: 119 LLQGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLDDVEADIIGKSYEYLIRKFA 178 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + A +F TP +V + + L P +YDPTCG+GG L + Sbjct: 179 EGGGQSAGEFYTPPEVGTIMSRAL----------QPEQGMEIYDPTCGSGGLLVKCEIAM 228 Query: 228 ADCGSHHKI---------------------------PPILVPHGQELEPETHAVCVAGML 260 + K L GQE PET A+ M+ Sbjct: 229 EEQRREIKEGGHSCPPLHSELNGYPLCNGGLENPPSFAPLKLFGQEYIPETWAMANMNMI 288 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKE 315 I +E I+ G T F K+ F ++NP + + W E + Sbjct: 289 IHDMEG--------QIEIGDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEAD 335 Query: 316 HKNGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 + N EL RF G G P S ++ H+ L N GRAAIVL + + G +G Sbjct: 336 YDNDELDRFPAGAGFPGKSSADWGWVQHMHASL----NDTGRAAIVLDTGAVSRGSGNAG 391 Query: 374 ---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 E +R+W ++ND+IE+++ LP +LF+ T + L+ K E+R+ KV L+NA+ + Sbjct: 392 TNKEKNVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNKAKPEDRKSKVFLVNASRI 451 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFI 489 + G + I D+ ++I+D + + + SR++D+ + P R Sbjct: 452 FEK----GDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVDHAELKKNDYNI-SPSRYIHT 506 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + L+ +++Q+ Sbjct: 507 GEAETYRLIPEIVKELNAIEEEARETDKALRNILKQLG 544 >gi|169346894|ref|ZP_02865842.1| type I restriction-modification system, M subunit [Clostridium perfringens C str. JGS1495] gi|169296953|gb|EDS79077.1| type I restriction-modification system, M subunit [Clostridium perfringens C str. JGS1495] Length = 514 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 98/493 (19%), Positives = 193/493 (39%), Gaps = 69/493 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++L + +W A DL G+ ++F IL R L +E + + E+ Sbjct: 9 EQQSNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSYEE 68 Query: 66 NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAI 114 + E + ++ ++ L + + E I + +++ Sbjct: 69 AWEDEELREALKEELVNDIGYFIEPKFLFDKLLAKIETGDFDIEILEEAINNITESTLGQ 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + +F ++ ++ L+ K+ + I+ D ++ + YE+L Sbjct: 129 ESEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYEYL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + ++ L + +YDPTCG+G L Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + +GQE T+ + ML+ ++ NI+ TL Sbjct: 241 VS----------REAKVRMFYGQEKTSTTYNLARMNMLLHGVK-----YSDFNIKNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLM 340 +F ++NPP+ KW D ++ E RF L S F+ Sbjct: 286 ENPQHGDLKFEAIVANPPYSAKWSGDDKFLDDE-------RFSAYGKLAPKSKADFAFIQ 338 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399 H+ + L G A+VL LF G A E IR+ L+E ++++A++ LP ++FF Sbjct: 339 HMIHHL----EDNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFF 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + + +K + + I+A++ + GK + ++ D +I++ Y R Sbjct: 392 GTSIPTVILVF--KKNRKNADNIMFIDASNEFEK----GKNQNVLRDRDVEKIVETYKKR 445 Query: 460 ENGKFSRMLDYRT 472 EN + Sbjct: 446 ENVDKYAYVATME 458 >gi|329903168|ref|ZP_08273390.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Oxalobacteraceae bacterium IMCC9480] gi|327548463|gb|EGF33135.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Oxalobacteraceae bacterium IMCC9480] Length = 475 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 91/519 (17%), Positives = 180/519 (34%), Gaps = 73/519 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65 + +W A+ L + ++ ++L ++ + + R+ + K+ Sbjct: 2 LDDIKKTLWATADKLRANMDAAEYKHIVLGLIFVKYISDPFQTRRAELTHKFADTSDDYF 61 Query: 66 ----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108 + F+ TL + + ++ I + Sbjct: 62 LGEVDQAQLHAELEDRDYYREVNVFWVPEAARWETLRAQAKQADIGKRIDDALSLIETEN 121 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLI 163 K I + + G L ++ F ++ +YE+ + Sbjct: 122 PKLKGILDKRYARVQLPD----GKLGELVDLVSQIGFGESTDTAKNHARDLLGQVYEYFL 177 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 +F S + F TP +V+ ++L +YDP CG+GG + Sbjct: 178 GQFASAEGKRGGQFYTPASIVNTLVSVLAPHHG-----------QVYDPCCGSGGMFVQS 226 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + G + +GQE P T + + IR ++ + + + T Sbjct: 227 EKFIEAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGK------EPDDTFV 277 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 ++ R + L+NPPF R+ G P + + +L H+ Sbjct: 278 RNQHPDLRADFVLANPPFNIS-------DWWHGSLEGDPRWVYGTPPQGNANYAWLQHML 330 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ GRA IVL++ + + + E +IRR ++E D +E ++ALP LFF T I Sbjct: 331 YHLKPT----GRAGIVLANGSMSSS--QNTEGDIRRAMVEADKVEVMIALPGQLFFNTQI 384 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG- 462 LW L K +G+V I+A L + I + D +I + +G Sbjct: 385 PACLWFLVKEKRAR-QGEVLFIDARKLGSMISRV---QCEFTVDVIERIAGTVAAWRDGG 440 Query: 463 -KFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLE 499 +++ + GY R + + +L + G++ Sbjct: 441 AEYADVA-----GYCRSVTLEEIAEHGHVLSRGGMSEPR 474 >gi|168211072|ref|ZP_02636697.1| type I restriction-modification system, M subunit [Clostridium perfringens B str. ATCC 3626] gi|170710874|gb|EDT23056.1| type I restriction-modification system, M subunit [Clostridium perfringens B str. ATCC 3626] Length = 514 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 102/546 (18%), Positives = 212/546 (38%), Gaps = 70/546 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++L + +W A DL G+ ++F IL R L +E + + E+ Sbjct: 9 EQQSNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSYEE 68 Query: 66 NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAI 114 + E + ++ ++ L + + E I + +++ Sbjct: 69 AWEDEELREALKEELVNDIGYFIEPKFLFDKLLAKIETGDFDIEILEEAINNITESTLGQ 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + +F ++ ++ L+ K+ + I+ D ++ + YE+L Sbjct: 129 ESEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYEYL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + ++ L + +YDPTCG+G L Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + +GQE T+ + ML+ ++ NI+ TL Sbjct: 241 VS----------REAKVRMFYGQEKTSTTYNLARMNMLLHGVK-----YSDFNIKNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLM 340 +F ++NPP+ KW +D ++ E RF L S F+ Sbjct: 286 ENPQHGDLKFEAIVANPPYSAKWSRDDKFLDDE-------RFSAYGKLAPKSKADFAFIQ 338 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399 H+ + L G A+VL LF G A E IR+ L+E ++++A++ LP ++FF Sbjct: 339 HMIHHL----EDNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFF 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + + +K + + I+A++ + GK + ++ D +I++ Y R Sbjct: 392 GTSIPTVILVF--KKNRKNADNIMFIDASNEFEK----GKNQNVLRDRDVEKIVETYKKR 445 Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 EN K++ + + P + ++ + +E ++L + + Sbjct: 446 ENVDKYAYVATMEEVKENDYNLNIPRYVDTFEEEEEIDIIEVQKNIKELDKEIEELKKSL 505 Query: 519 LKPMMQ 524 + + Sbjct: 506 EADLKE 511 >gi|197249396|ref|YP_002149446.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213099|gb|ACH50496.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 496 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 116/464 (25%), Positives = 191/464 (41%), Gaps = 53/464 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L +W AE L G +D+ + I P +RL + E + Sbjct: 2 SNKKLEELLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYNEAMELHEG----- 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + F SE + + +T N +++ I + +F D ++ Sbjct: 57 -DAEYAAMPMFHRFNIPSEAAWEKVRNTSKNIGEAIQNALRLIEVNNPRLHGVFGDAQWT 115 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + ++FS I L +V + YE+LI++F + A +F T R Sbjct: 116 NK-ERLPDH-LLADLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 173 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VVHL T ++ T YDPTCGTGG L +A V D + + + Sbjct: 174 TVVHLMTRIMGL----------KPGETAYDPTCGTGGMLLNA---VMDLRARGEEWRSVH 220 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLS 297 +GQE+ T A+ M + +E ++ +G TL++ F K+F + Sbjct: 221 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLAEPKFIENDRLKQFDVIFA 273 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+ K + GR G+P F H+ L+ GRAA Sbjct: 274 NPPYSIK-----KWNRDKFAADPYGRNLYGVPPQGCADYAFYTHIIKSLKPDT---GRAA 325 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 ++ LF E IR+ ++E+D+IEA++ L +LF+ + + + + +L+ K E Sbjct: 326 MLWPHGVLFR----DSEQTIRKQVVESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKPAE 381 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 R+ KV IN + T R ++ D + + Y S EN Sbjct: 382 RKNKVLFINGVEHVTRERA----HSRLSKDDLAVLCEAYFSPEN 421 >gi|158315560|ref|YP_001508068.1| N-6 DNA methylase [Frankia sp. EAN1pec] gi|158110965|gb|ABW13162.1| N-6 DNA methylase [Frankia sp. EAN1pec] Length = 564 Score = 314 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 100/503 (19%), Positives = 158/503 (31%), Gaps = 90/503 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + A L +WK A+ L G + +L L+ + A R +R+ LA G Sbjct: 14 TMAQLRETLWKTADKLRGSMDAAQYKDFVLVLIFLKYVSDAFAERREQIRQDVLADGIDE 73 Query: 67 IDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114 E F+ F+ + + + + + + + Sbjct: 74 SRAEEFLDDVDEYAGQGVFWVPGRARWEHIAANAKSAGIGELLNAAMDAVMKTNPALTGV 133 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---------------------- 152 F+ L ++ + Sbjct: 134 LPRI-FNGEG---VDQHRLGELVDLLGDARFTGHRATERPPSTPTGEDGALFGESAAGVP 189 Query: 153 ---------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 V+ +YE+ + RF + +F TP VV L +L Sbjct: 190 TEAATRPARDVLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVL-----------E 238 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 +YDP CG+GG A V + +GQE T + + I Sbjct: 239 PYEGRVYDPCCGSGGMFVQAEKFVVAHRG-LTHSGDIAVYGQESNERTWRLAKMNLAIHG 297 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + D + T D R + L+NPPF + + R Sbjct: 298 ITGDLSA------RWDDTFRNDRHPDLRADFILANPPFNMS---------DWARTVDDQR 342 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + G P + + +L H+ KL G A + S SGE EIR L+E Sbjct: 343 WRYGTPPTGNANFAWLQHIIAKLGSRGTAGVVMA---NGSM---SSKQSGEGEIRAALVE 396 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------EERRGKVQLINATDLWTSIRN 436 DL+ ++ALP LF T I LW + K ERRG+ I+A D+ T I Sbjct: 397 ADLVACMIALPPQLFRTTQIPACLWFFAKDKGQLGARWLAERRGETLFIDARDMGTMIDR 456 Query: 437 EGKKRRIINDDQRRQILDIYVSR 459 RI+ D +I D Y + Sbjct: 457 TE---RILTDGDLEKITDTYRAW 476 >gi|21228300|ref|NP_634222.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] gi|20906762|gb|AAM31894.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] Length = 505 Score = 314 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 98/506 (19%), Positives = 177/506 (34%), Gaps = 54/506 (10%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + +WK A+ L + ++ ++L LR + A E ++ Sbjct: 1 MSDFEKQLWKAADKLRKNIDAAEYKHIVLGLIFLRYISDAFEELYEK-LQQGEGEYAGAD 59 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDF 120 + A F+ + L S + +N I + + + Sbjct: 60 PEDRDEYKAENVFFVPAISRWPYLQSEAKKPDIGKSVDNAMDAIEKENPLLRGVLPKVFA 119 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + L + S + L + V+ +++E+ + F + F T Sbjct: 120 RGNL----DPTNLGGLIDLVSNVALGDAKSRSADVLGHVFEYFLGEFALAEGKKGGQFYT 175 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR VV L +L ++DP CG+GG + VAD Sbjct: 176 PRSVVELLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFVADHQGKIN---D 221 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + +GQE T + + IR ++S + ++ + D+ + Y ++NP Sbjct: 222 ISIYGQESNQTTWRLAKMNLAIRSIDSSQVKWNNEG-----SFLNDVHKDLKADYVIANP 276 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF + GR+ G+P + + ++ H L G+A V Sbjct: 277 PFNDSDWSGD-------LLRKDGRWKYGVPPAGNANYAWIQHFLYHLGPS----GQAGFV 325 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415 L+ L + SGE +IR+ L+E L++ IV LP LF T I LW LS K Sbjct: 326 LAKGSLTS--KSSGEGDIRKELVEARLVDCIVNLPPKLFLNTQIPASLWFLSRNKANGKH 383 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 R ++ I+A ++ I + R + + +QI Y N + D + F Sbjct: 384 RNRTDEILFIDARNMGHLINR---RTREFSPEDIQQIAGTYHKWRNPEG-NYEDVKGFC- 438 Query: 476 RRIKVLRPLRMSFILDKTGLARLEAD 501 + R + ++L L D Sbjct: 439 NSAPIERVRELGYVLTPGRYVGLPDD 464 >gi|315222636|ref|ZP_07864525.1| putative type I restriction-modification system, M subunit [Streptococcus anginosus F0211] gi|315188322|gb|EFU22048.1| putative type I restriction-modification system, M subunit [Streptococcus anginosus F0211] Length = 496 Score = 314 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 109/528 (20%), Positives = 200/528 (37%), Gaps = 46/528 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L ++W +A L + + I P +RL + VR ++ + Sbjct: 6 TIDELEKYLWGSAVLLRTHVDAGAYKQYIFPLLFFKRLSDVYDEECEKVRAEFGE-EALD 64 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + ++ + +N ++S A+ + IF D +++ R Sbjct: 65 WEENHQFQIPDGAHWNDVR-NVSQDVGKAIIEAFHKIEAANPEKLHGIFGDASWTNK-NR 122 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L LL + ++FS L P + YE+LI++F + A++F T R VV+L Sbjct: 123 LPDR-LLKDMLEHFSTKTLSIANCPADELGQGYEYLIKQFADDSGHTAQEFYTNRTVVNL 181 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L P ++YDPTCG+ G L A+ ++ G + L +GQE Sbjct: 182 MIEML----------KPQPSESIYDPTCGSAGMLISAVAYLKQQGLEWR---NLSIYGQE 228 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG 302 + T A+ +L+ + NI TL FT ++F L+NPP+ Sbjct: 229 IVTLTSAIARMNLLLHGV-------QDFNIVNADTLKTPAFTDHAKLQQFDLILANPPYS 281 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 ++ + GR G P F H+ L+ GR AI+ Sbjct: 282 ISQWD-----RTAFESDKYGRNFLGTPPQGRADYAFFQHI---LKSLDEKTGRCAILFPH 333 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 LF E ++R L+++DL+E ++ L +LF+ + + + I RK R G+V Sbjct: 334 GVLFRNE----EKDMREKLVKSDLVECVIGLGPNLFYNSPMEACIIICRTRKAVNREGQV 389 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVL 481 INA + T + + D +I Y E +G ++++ + + Sbjct: 390 LFINALNEVTR----KNAQSYLEDKHIEKIAKAYDKYESDGDIAKVVTIKDIAKNDYSLS 445 Query: 482 RPLRMSFILDKTGLARLEADITWR-KLSPLHQSFWLDILKPMMQQIYP 528 PL + ++ R + K + S + + M+ Sbjct: 446 IPLYIQTSSEEQEDDRTIQECYSDWKEAAEMASRHFESINKMIGGDGN 493 >gi|208780344|ref|ZP_03247685.1| N-6 DNA Methylase family protein [Francisella novicida FTG] gi|208743712|gb|EDZ90015.1| N-6 DNA Methylase family protein [Francisella novicida FTG] Length = 512 Score = 314 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 95/540 (17%), Positives = 186/540 (34%), Gaps = 62/540 (11%) Query: 1 MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + + + +WK A+ L + ++ V+L L+ + + E + + + Sbjct: 1 MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAEL--QS 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112 + E F+ ++ S L + + I +++ K Sbjct: 59 EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171 + + + L ++ I + + V+ +++E+ + F Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP+ VV L +L ++DP CG+GG + V Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T +C + IR ++S + S+ + D + Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF + R+ G P S+ + ++ H L Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPASNANYAWIQHFLYHLAPT-- 323 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A VL+ L + SGE +IR+ L+E +L++ IV LP LF T I LW + Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI- 378 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K + + I+A + I K +DD +I Y + + S + Sbjct: 379 --KRGRKTKDILFIDARNKGHLINRITK---EFSDDDITEIAQTYHNWKLSCHSELDSKS 433 Query: 472 T-----FGYRRIKV-LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 G+ + ++++L LE + S + + M Q+ Sbjct: 434 HKYEDIKGFCKSASYEEVAELNYVLTPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQE 493 >gi|331018716|gb|EGH98772.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 576 Score = 314 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 98/550 (17%), Positives = 192/550 (34%), Gaps = 68/550 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + + L +W A+ + + ++ ++L L+ + + R+ + ++ Sbjct: 50 TATSITLQDLEKTLWATADKMRANMDPAEYKHIVLGLIFLKYISDSFAGRRAELERRFAD 109 Query: 62 FGGS------------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105 E F+ ++ + + ++ I Sbjct: 110 ASDDYYLGGDDPTYLAAELEERDYYKEVNVFWVPGVARWESIRANAKQVDIGKRIDDALA 169 Query: 106 ---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEH 161 + + K I + + + G L ++ S I D ++ +YE+ Sbjct: 170 DIEAENPQLKNILDKRYARAQLPD----GKLGELVDMISIIGFSSDANKARDLLGQVYEY 225 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + +F S + F TP +V A+L +YDP CG+GG Sbjct: 226 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPHHG-----------KVYDPCCGSGGMFV 274 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + G + +GQE P T + + IR ++ + R+ + T Sbjct: 275 QSEKFIEAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDFNLGREPA------DT 325 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 + + R + L+NPPF R+ G P + + +L H Sbjct: 326 FIYNQHSDLRADFVLANPPFNVS-------DWWHGSLEGDPRWVYGTPPQGNANYAWLQH 378 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L+ GRA IVL++ + + E +IRR ++E D++E +VALP LFF T Sbjct: 379 MLFHLKSS----GRAGIVLANGSM--SSTQNTEDDIRRAMVEADVVEVMVALPGQLFFNT 432 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460 I LW L+ +K G+V I+A L +++ + + D +I + Sbjct: 433 QIPACLWFLAKQKVTRP-GEVLFIDARKLGSNVSRV---QIELLDSDIERIAQTVANWRG 488 Query: 461 -----NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 G+ + +D F R + + + +L EA + Sbjct: 489 VPLDVGGEIAEYVDVAGFC-RSVTLAEIAKHGHVLTPGRYVGAEAVEDDDEAFAEKMQNL 547 Query: 516 LDILKPMMQQ 525 +L M + Sbjct: 548 TALLGEQMAK 557 >gi|258509976|ref|YP_003175639.1| Type I restriction modification system protein HsdMI, M subunit [Lactobacillus rhamnosus Lc 705] gi|257152817|emb|CAR91788.1| Type I restriction-modification system, M subunit [Lactobacillus rhamnosus Lc 705] Length = 540 Score = 314 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 122/577 (21%), Positives = 210/577 (36%), Gaps = 73/577 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53 M+E T A+ L + +W A+ L G +++ +L R L Sbjct: 1 MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100 V +KY + +LE Y NT Y + L +T ++L Sbjct: 61 NVTQKYAQYMNPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYATLIGKIQAHTFALDDL 120 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150 + + + + DFS A ++ + L + + + Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLIHH 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ + YE+LI +F S+ + A +F TPR V + ++ +RT+Y Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQR----NAGDNQVRTIY 236 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+G L + HV D P ++ HGQEL T + +++ + D Sbjct: 237 DPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTFNLARMNLMLHGVSYDDM- 288 Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +++ G TLSKD + F + NPP+ W + K RF Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S FL+H L+ G IVL LF G E +IR+ LL ++ Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+AI+ LP ++F T+I T + IL KT V I+A+ + +N + + Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 ++I+ Y +R++ K++ + + P R + L+ Sbjct: 444 VNIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIP-RYVDTFEPEPEIDLDQVKADL 502 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 K S + Q+ + E+ Sbjct: 503 KQLDEAISHHEQAFNELASQLVVTQVNDQSKPEAHNE 539 >gi|291534512|emb|CBL07624.1| Type I restriction-modification system methyltransferase subunit [Roseburia intestinalis M50/1] Length = 805 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 115/534 (21%), Positives = 215/534 (40%), Gaps = 61/534 (11%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T+ ++ L N +++ L G +F + P +R+ + E Sbjct: 309 TKEETTSRQLFNHLFEACNILRGPINQDEFKSYVTPVLFFKRISDVYDEEYEEALEF--- 365 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLST--LGSTNTRNNLESY---IASFSDN-AKAIF 115 S D+E +SF + + S + + I + + +F Sbjct: 366 ---SGGDVEYAEAEDMHSFVIPDGCHWNDVRMVSQDVGKAIVKAMTGIEKANPDTLSGVF 422 Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 FD ++ + + L + ++ S I++ +M + YE LI++F + A Sbjct: 423 SSFDDATWTDKNKLTDERLKNLIEHMSLIKVGNKNYSADIMGDSYEFLIKKFADMSKKNA 482 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR +V L LL P T+YDP CGTGG L +A++H+ ++ Sbjct: 483 GEFYTPRTIVKLMVNLL----------DPKPGETVYDPACGTGGMLIEAIHHM-----NN 527 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290 GQE T A+ + + + ++QG TL LF K Sbjct: 528 DRLAYGRIFGQENNLSTSAIARMNLYLHGAK-------DVQVKQGDTLRNPLFLEKGKLK 580 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F L+NPPFG K + ++ + GR G P S +L H+ ++ Sbjct: 581 TFDCVLANPPFGMK-----KWGAGQFESDQYGRNMWGCPSDSSADFAWLQHMIKSMDSK- 634 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GR A+VL LF+ E EIR L+ +D +EA++ L + +F+ T ++ + L Sbjct: 635 --NGRCAVVLPQGVLFHSGK---EGEIREQLVRSDKLEAVITLASGVFYSTGVSACILFL 689 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLD 469 +N+K + +G++ LI+ T+++T R + II+ D + + +Y + + +++ Sbjct: 690 NNKKEHKHKGRICLIDGTEIYTPQRA----QNIISPDNVKTLYKLYTDYVDVIEKCKIVT 745 Query: 470 YRTFGYR------RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 + + + + + +K LA EA RK + ++ Sbjct: 746 IDDVEKGGFELSVKKYIEQKAKEAIPHEKVLLAYYEALTKVRKSEEKMRKLLIE 799 >gi|168207083|ref|ZP_02633088.1| type I restriction-modification system, M subunit [Clostridium perfringens E str. JGS1987] gi|170661530|gb|EDT14213.1| type I restriction-modification system, M subunit [Clostridium perfringens E str. JGS1987] Length = 514 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 101/493 (20%), Positives = 196/493 (39%), Gaps = 69/493 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++L + +W A DL G+ +F IL R L +E + + E+ Sbjct: 9 EQQSNLQSNLWNIANDLRGNMDANEFKNYILGLIFYRYLSENVESRANRLLEEDNMTYAE 68 Query: 66 NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAI 114 + E + +Y ++ L S + E I + +++ Sbjct: 69 AWEDEELREALQEELVNDIGYYIEPKFLYHNLLSKIETGDFDIEMLEEAINNITESTLGE 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + +F ++ ++ L+ K+ + I+ ++ + YE+L Sbjct: 129 DSEEEFDHLFDDMDLKSTKLGKDVKSRSDLIAKVMGKIAQIDFSFSNSEIDILGDAYEYL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + ++ L + +YDPTCG+G L Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + +GQEL T+ + ML+ + R +I+ TL Sbjct: 241 VS----------REANVRTFYGQELTSTTYNLARMNMLLHGV-----RYSDFDIKNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLM 340 RF ++NPP+ KW D+ ++ E RF L S F+ Sbjct: 286 ENPQHIDLRFEAVVANPPYSAKWSGDEKFLDDE-------RFSAYGKLAPKSKADFAFVQ 338 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399 H+ ++L + G A+VL LF G A E IR++L+E ++++A++ LP ++FF Sbjct: 339 HMIHQL----DNNGTMAVVLPHGVLFRGAA---EGVIRKYLIEKRNVLDAVIGLPANIFF 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + + +K + + I+A++ + GK + ++ D +I++ Y +R Sbjct: 392 GTSIPTVILVF--KKNRKNTDNIMFIDASNEFEK----GKNQNLLRDSDVDKIIETYKNR 445 Query: 460 ENGKFSRMLDYRT 472 EN + Sbjct: 446 ENVDKYAYVSSME 458 >gi|220908526|ref|YP_002483837.1| N-6 DNA methylase [Cyanothece sp. PCC 7425] gi|219865137|gb|ACL45476.1| N-6 DNA methylase [Cyanothece sp. PCC 7425] Length = 540 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 101/558 (18%), Positives = 190/558 (34%), Gaps = 72/558 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + SL +WK A+ L + ++ ++L L+ + A + + + + Sbjct: 7 NDKHNNESLEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFDKLHAKLVAGEGEY 66 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDN-AKAI 114 G++ + A F+ + S L + + I + K I Sbjct: 67 AGAD-PEDPDEYKAENVFFVPPDARWSVLQGQAKQPTIGQKVDEAMEAIERENPKLLKGI 125 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MS 156 + L + L + Sbjct: 126 LPKVYGQQKL----DPTALGGLIDMIGSTNLAKAEAESDGQLVLETEPIAEPRRQQDLLG 181 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +YE+ + +F + F TP VV + +L ++DP CG+ Sbjct: 182 QVYEYFLGQFALAEGKKGGQFYTPESVVKVLVEML-----------EPYKGRVFDPCCGS 230 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG + V H + +GQE T+ +C + IR ++ R + Sbjct: 231 GGMFVQSEKFV---SHHQGRLNDISIYGQESNETTYKLCRMNLAIRGIDGSNIRWNPEG- 286 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + KD + + ++NPPF + GR+ G+P + + + Sbjct: 287 ----SFLKDAHKDLKADFVIANPPFNDSDWGGD-------LLRQDGRWQYGVPPVGNANF 335 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 ++ H L G A VLS+ L SGE EIR+ L++ DL++ IV LPT Sbjct: 336 AWVQHFLYHL----ALTGAAGFVLSNGSL--SSNTSGEGEIRKALVQADLVDCIVMLPTQ 389 Query: 397 LFFRTNIATYLWILSN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LF+ T I LW LS K +R+G+V I+A++L + + R ++ ++I Sbjct: 390 LFYNTGIPACLWFLSRYKNGNKNRDRKGEVLFIDASELGYMVNR---RNRAFAEEDIQKI 446 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 Y + S D + F + + + +F+L + ++ Sbjct: 447 AGTYHEWK-RDGSTYQDIKGFC-KSATLAEIEKHNFVLTPGRYVGIPDEVESEVSFEETM 504 Query: 513 SFWLDILKPMMQQIYPYG 530 + L M++ Sbjct: 505 AALTAELAAQMKEAAELD 522 >gi|257883803|ref|ZP_05663456.1| DNA-methyltransferase [Enterococcus faecium 1,231,501] gi|257819641|gb|EEV46789.1| DNA-methyltransferase [Enterococcus faecium 1,231,501] Length = 538 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 101/496 (20%), Positives = 197/496 (39%), Gaps = 62/496 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64 + + + + +W A L G +++ ILPF R L + + E+Y Sbjct: 2 SNTSEITSKLWAMANKLRGTMDASEYKNYILPFMFYRYLSENQDDYLKKNGLEEYYEVTD 61 Query: 65 SNIDLESFVKVAGYSFYNTSE-YSLSTLGST-----NTRNNLESYIASFSDNAK------ 112 + +++ Y + Y+ L ++ + SF+ NAK Sbjct: 62 PEEKEDYLQEISRGIGYAIAPEYTWEQLVKKIENHQIKASDFQDLFDSFNANAKRNPLAE 121 Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 +F D + T E+A L I + D ++ ++YE+LI + Sbjct: 122 DDFANVFSDINLGDTRLGSNTNERAKALNDIVLMINDFVFK-DEAGHDILGDVYEYLIGQ 180 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + +F TP +V + ++ +YDPT G+G L Sbjct: 181 FAANAGKKGGEFYTPHEVSQVLAKIVTSD-----ANVEDNQFRVYDPTMGSGSLLLTVKK 235 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + +GQEL T+ + +++ + + N+++ TL D Sbjct: 236 EL----PAGDKSGSVDFYGQELNTTTYNLARMNLMMHGIN-----YQNMNLRRADTLDAD 286 Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336 + +F ++NPP+ KW D V++E + RF G G+ S Sbjct: 287 WPFAEKEGMQIPLKFDAVVANPPYSAKW--DIKDVDRE----KDTRFKGYGVAPASKADY 340 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H L+ G AIVL LF G A E +IR+ +++N+L++A++ +P + Sbjct: 341 AFVLHGLYHLDKS----GTMAIVLPHGVLFRGAA---EGKIRKNIIDNNLLDAVIGMPAN 393 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T+I T + + + + + I+A+ + GK + ++DD +I++ Y Sbjct: 394 LFYGTSIPTTVLVF-KGREARKTKDILFIDASSEFVK----GKNQNKLSDDNINKIIETY 448 Query: 457 VSRENGKFSRMLDYRT 472 RE+ + + Sbjct: 449 EKREDVEKYAHVATLE 464 >gi|227510763|ref|ZP_03940812.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189765|gb|EEI69832.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 540 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 124/577 (21%), Positives = 213/577 (36%), Gaps = 73/577 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53 M+E T A+ L + +W A+ L G +++ +L R L Sbjct: 1 MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100 V KY + +LE Y NT Y + L +T ++L Sbjct: 61 NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150 + + + + DFS A ++ + L + + + Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLIHH 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ + YE+LI +F S+ + A +F TPR V + ++ +A K+ +RT+Y Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRTIY 236 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+G L + HV D P ++ HGQEL T+ + +++ + D Sbjct: 237 DPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288 Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +++ G TLSKD + F + NPP+ W + K RF Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S FL+H L+ G IVL LF G E +IR+ LL ++ Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+AI+ LP ++F T I T + IL KT V I+A+ + +N + + Sbjct: 391 IDAIIGLPANIFHSTGIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 ++I+ Y +R++ K++ + + P R + L+ Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIP-RYVDTFEPEPEIDLDQVKADL 502 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 K S + Q+ + E+ Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQVNDQSKLEAHNE 539 >gi|219851734|ref|YP_002466166.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c] gi|219545993|gb|ACL16443.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c] Length = 513 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 104/479 (21%), Positives = 188/479 (39%), Gaps = 54/479 (11%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +++W+ A + G+ + ILP L+RL + + Y G ++ + Sbjct: 15 LESWLWEAACKIRGEIDAPKYKDYILPLIFLKRLSDVFDDEAKKMERTY---GNRDLVEK 71 Query: 71 SFVKVAGY-SFYNT--SEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTI 124 + FY S + ST L IA + + + DF++T Sbjct: 72 ILAEDHQLVRFYLPPESRWDAIAQKSTGLGELLTDAMRSIARENPKLQGSIDIVDFNATA 131 Query: 125 --ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 R+ L + L V ++ + YE+L+R+F + A +F TPR+ Sbjct: 132 AGQRIIPDDSLRTLIGVMGKYRLGLADVEPDIIGHAYEYLLRKFAEGSGQSAGEFYTPRE 191 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V L +L P +YDP CG+GG L + + + L Sbjct: 192 VALLMARIL----------DPKPGEEVYDPCCGSGGLLIKCAMYFRERYHNDPEVAPLQF 241 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLS 297 GQE + T A+ I +E I T+ F + F + Sbjct: 242 CGQENQHSTFAMAKMNTFIHDME--------AQIALQDTMRFPQFLNRDGSLRLFDIVTA 293 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NP + + +E +K ++ RF G P S ++ H+ L+ GR A Sbjct: 294 NPMWNQDFE------QKIYETDTYNRFTIGYPPSSSADWGWIQHMFASLKK----NGRMA 343 Query: 358 IVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +VL + + G +G E +IR+ E+DL+EA++ LP +LF+ T + +++ K Sbjct: 344 VVLDTGAVSRGSGNTGKNRERDIRKNFAEHDLVEAVILLPENLFYNTTAPGIILVINQGK 403 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 +G++ L+NA+ L+ G+ + I D+ Q+ I+ + + S ++ Sbjct: 404 --LHKGEILLVNASKLFQK----GRPKNFIPDECIAQVAGIFRDWKAVDEISTIVSAID 456 >gi|146291272|ref|YP_001181696.1| type I restriction-modification system, M subunit [Shewanella putrefaciens CN-32] gi|145562962|gb|ABP73897.1| type I restriction-modification system, M subunit [Shewanella putrefaciens CN-32] Length = 506 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 105/487 (21%), Positives = 177/487 (36%), Gaps = 54/487 (11%) Query: 1 MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 MT + + +W + G + IL L+ + + + +Y Sbjct: 1 MTSTNQINQDDINKAVWAACDTFRGVISADTYKDFILTMLFLKYISDVYKDEYKKLVAQY 60 Query: 60 L---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 + + + FV G SF++ E L + + K +F+ Sbjct: 61 GDNPELIHAMMSKQRFVLPEGASFWDLYEKRYEAGNGERIDKALHAIEEANGSKLKNVFQ 120 Query: 117 DFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171 D F+ +K LL + ++F L+ T ++ N YE+LI+ F + Sbjct: 121 DISFNTDRLGQEKQKNDLLRHLLEDFGKDILNLSTERVGSLDIIGNAYEYLIKHFAAGSG 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 A ++ TP +V L L P + DP G+G L V Sbjct: 181 ATAGEYYTPPEVSTLLATAL----------EPVEGDQICDPCTGSGSLLLKCGAMVRKNS 230 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290 K GQE T A+ M + + + I+ G T+ L K Sbjct: 231 GSKK----YALFGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPLLKEKD 279 Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F +NPPF + N GRF G+P + G F+ H+ Sbjct: 280 GNGLLHFDVVTANPPFSLD-----KWGHDDASNDPYGRFRRGIPPKTKGDYAFITHMIET 334 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GR +V+ LF S E +IR+ L+E +L++ ++ LP LFF T I Sbjct: 335 LKPET---GRMGVVVPHGVLFR---ASSEGKIRKQLIEENLLDTVIGLPEKLFFGTGIPA 388 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465 + I KT++ V I+A+ + GK + + D+ ++I+D Y +RE+ Sbjct: 389 AILIFKKHKTDK---NVLFIDASREF----KPGKNQNQLTDENIQKIIDTYKARESVDKY 441 Query: 466 RMLDYRT 472 L Sbjct: 442 AYLASFD 448 >gi|51598167|ref|YP_072358.1| type I site-specific deoxyribonuclease LldI chain hs... [Yersinia pseudotuberculosis IP 32953] gi|186897391|ref|YP_001874503.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis PB1/+] gi|51591449|emb|CAH23120.1| putative type I site-specific deoxyribonuclease LldI chain hs [Yersinia pseudotuberculosis IP 32953] gi|186700417|gb|ACC91046.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis PB1/+] Length = 507 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 105/542 (19%), Positives = 201/542 (37%), Gaps = 58/542 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ + +W + G + IL L+ + + + +Y Sbjct: 1 MSNMID-QDRINRVLWGVCDTFRGTISPDTYKDFILTMLFLKYISDVWQDHYDGYKAQYG 59 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113 + E FV SFY + L + + K Sbjct: 60 DEPELIEEMMKNERFVLPKDASFYALYKRRSEAGNGERIDVALHAIEEANGTKLKDGSKS 119 Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168 +F++ F+ +K +L ++ ++F+ EL+ V+ N YE+LI +F + Sbjct: 120 VFQEISFNTNKLGDEKQKNLILKQLLEDFTHPELNLKPSRVGGLDVIGNAYEYLIGKFAA 179 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A ++ TP +V L ALL P ++ DPTCG+ L VA Sbjct: 180 NSGQKAGEYYTPPEVSDLLAALL----------DPQPGESICDPTCGSASLLMKCGKWVA 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + +GQE T ++ M + + + I+ G T+ Sbjct: 230 EKYHS----KNYELYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLL 278 Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K F +NPPF + D + + RF GLP + G F++H+ Sbjct: 279 DKNANLMLFDVVTANPPFSLEKWGIDDVSDDQF-----SRFRRGLPPKTKGDYAFILHMI 333 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 ++ GR +V+ LF G S E +IR+ L++ +L++A++ LP LFF T I Sbjct: 334 ETMKPKT---GRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFFGTGI 387 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I K V I+A+ + N GK + ++ + +I+ Y +N + Sbjct: 388 PAAILIFKKSK---VDDNVLFIDASREF----NSGKNQNQLSTENIAKIVKTYRDGDNVE 440 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 ++ + + + P + ++T + + A ++L +++ K + Sbjct: 441 KYAYLASLQEIRDNDYNLNIPRYVDTFEEETEIDLMTARAERKQLQAQLADLEVEMTKYL 500 Query: 523 MQ 524 + Sbjct: 501 RE 502 >gi|323491151|ref|ZP_08096339.1| putative type I restriction-modification system methyltransferase subunit; (hsdM-like) protein [Vibrio brasiliensis LMG 20546] gi|323314616|gb|EGA67692.1| putative type I restriction-modification system methyltransferase subunit; (hsdM-like) protein [Vibrio brasiliensis LMG 20546] Length = 538 Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 103/464 (22%), Positives = 184/464 (39%), Gaps = 54/464 (11%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + + + +D++ F + Sbjct: 21 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQKMID---DGQEAFVDMKEFYQ 77 Query: 75 VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127 FY +S +S N +++ I + + K D FS + Sbjct: 78 Q-DNIFYLEESSRWSFVQKHAKQDNIAVVIDTALASIEKANPSLKGALPDNYFSRQDLEV 136 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 +K L +N + D + ++ +YE+ + +F + +G +F TP+ VV L Sbjct: 137 KKLASLIDTIENIDTLADECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSVVTLL 196 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 T +L +YDP CG+GG ++ V K + +GQEL Sbjct: 197 TEML-----------EPFQGKIYDPACGSGGMFVQSLKFVKQHEGRTK---DIAIYGQEL 242 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + + IR L + + T D + Y ++NPPF + Sbjct: 243 TSTTYKLAKMNLAIRGLSGNLGE------RPADTFFADQHKDLKADYIMANPPFNISQWR 296 Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 D E++ + RF G P + + +++H+ +KL G A + S Sbjct: 297 D------ENELTKDPRFSGYRTPPTGNANYGWILHMLSKLSETGTAGFVLA---NGSMSS 347 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-------RR 419 N SGE EIR+ L+END++E ++ALP LF+ T I +W ++ K R Sbjct: 348 N---TSGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNKQANSSKGYRPRE 404 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I+A ++ T K + D I D Y + + Sbjct: 405 KETLFIDAREMGTMTSRVHK---ELTVDDIALIADTYHAWRSDD 445 >gi|237755861|ref|ZP_04584457.1| type I restriction-modification system, M subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691972|gb|EEP60984.1| type I restriction-modification system, M subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 506 Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 101/511 (19%), Positives = 179/511 (35%), Gaps = 57/511 (11%) Query: 1 MTEFTGSAAS--LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + T + L +WK A+ L + ++ V+L L+ + A E +++ Sbjct: 1 MAKKTKVKNNEPLEAKLWKAADTLRKNIDAAEYKHVVLGLVFLKYISDAFEKLYEELKK- 59 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNA 111 + +A FY + S + + I + Sbjct: 60 ----DPYADPEDKDEYLAKNVFYIPEKARWSEIKKHAKNPEIGKILDEAMDEIERENPQL 115 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170 K + I L L + F IEL ++ ++E+ + +F Sbjct: 116 KGVLPKVYSKGNIDPLS----LGGLIDLFDNIELEAVKEKSADILGYVFEYFLGQFALAE 171 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP+ VV L ++ ++DP CG+GG + V Sbjct: 172 GKKGGQFYTPKSVVELLVEMI-----------QPFKGRVFDPCCGSGGMFVQSEKFVLAH 220 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + +GQE T +C + IR ++S + S+ +L D Sbjct: 221 QGKI---DDISIYGQESNQTTWKLCKMNLAIRHIDSSQVKWNSEG-----SLLNDAHKDL 272 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + Y L+NPPF +K R+ G+P + + ++ H L Sbjct: 273 KADYILANPPFNQKEWG-------REYLENDPRWQYGIPPAGNANYAWIQHFIYHLSNKG 325 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G A + +S E EIR+ L+E DL+E IV LP LF I LW + Sbjct: 326 KAGFVLAKISLTS------KQKEEYEIRKNLIEADLVECIVNLPGKLFLNAPIPVCLWFI 379 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + K +R+G++ I+A D+ I + R++ + R+I D Y + G D Sbjct: 380 NKNK--KRKGQILFIDARDMGELINR---RLRVLRPEDIRKIADTYHEWQKGSDGNYQDI 434 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 F + + + + L L + Sbjct: 435 VGFC-KSASLEEVRNLDYALAPGRYVGLPEE 464 >gi|260102294|ref|ZP_05752531.1| type I restriction-modification system [Lactobacillus helveticus DSM 20075] gi|260083891|gb|EEW68011.1| type I restriction-modification system [Lactobacillus helveticus DSM 20075] Length = 540 Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 115/497 (23%), Positives = 196/497 (39%), Gaps = 71/497 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-------CALEPTRS 53 M+E T A+ L + +W A+ L G +++ +L R L Sbjct: 1 MSEKTMQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSEWAGETE 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSLS--TLGSTNTR---------NNL 100 V +KY + +LE Y NT Y + L +T ++L Sbjct: 61 NVTQKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIKPQALYTTLIGKIQAHTFALDDL 120 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150 + + + + DFS A ++ + L + + + Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ + YE+LI +F S+ + A +F TPR V + ++ +A K+ +RT+Y Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRTIY 236 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+G L + HV D ++ HGQEL T+ + +++ + D Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288 Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +++ G TLSKD + F + NPP+ W + K RF Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S FL+H L+ G IVL LF G E +IR+ LL ++ Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+AI+ LP ++F T+I T + IL KT V I+A+ + +N + + Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDNVLFIDASREFEKDKN----QNKLTA 443 Query: 447 DQRRQILDIYVSRENGK 463 ++I+ Y +R++ Sbjct: 444 ANIQKIVTTYQNRQDVD 460 >gi|189501455|ref|YP_001960925.1| type I restriction-modification system, M subunit [Chlorobium phaeobacteroides BS1] gi|189496896|gb|ACE05444.1| type I restriction-modification system, M subunit [Chlorobium phaeobacteroides BS1] Length = 527 Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 101/496 (20%), Positives = 183/496 (36%), Gaps = 80/496 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63 + + W + G + IL L+ + + +++Y Sbjct: 7 QKDINSAAWSACDTFRGVVDPAQYKDYILVMLFLKYISDVWQDHYEEYQKQYGDDDIRIR 66 Query: 64 GSNIDLESFVKVAGYSFYNTS----------EYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + V + N + +L + N+ I D+ + Sbjct: 67 RKLERERFVLPVVKLTEKNDETGEEAVLDEFPATYYSLYERRSAANIGELINIVLDHIED 126 Query: 114 --------IFEDFDFS---STIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYE 160 +F + DF+ + ++ L ++ ++F + + P V + V+ N Y Sbjct: 127 SNKVKLEGVFRNIDFNSEANLGKTKDRNRRLKQLLEDFHKPQLNMKPSLVSEDVIGNTYI 186 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI RF S+ + A +F TP V L L P + DP CG+GG L Sbjct: 187 YLIERFASDSGKKAGEFFTPFKVSELVAKL----------ADPRPGDRICDPACGSGGLL 236 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A V D GQE T A+C M + + S I+ Sbjct: 237 IKAAKEVGDRN--------FALFGQESNGSTWALCRMNMFLHSFD-------SARIEWCD 281 Query: 281 TLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 TL+ L +F+ ++NPPF ++ ++ + RF G+P S G Sbjct: 282 TLNSPLLVENDRLMKFNCVVANPPFSLDKWGAEN-----AESDQYNRFWRGVPPKSKGDW 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F+ H+ E+ GR A+V+ LF G A E IR+ ++E +L++A++ LP + Sbjct: 337 SFISHMV---EIALEKEGRVAVVVPHGVLFRGAA---EGRIRQKMIEENLLDAVIGLPGN 390 Query: 397 LFFRTNIATYLWILSNRKTEERRG---------KVQLINATDLWTSIRNEGKKRRIINDD 447 LF TNI + + + + V ++A+ + GK + ++D+ Sbjct: 391 LFQTTNIPVAILVFDRSREGTTKDTKSTKGENRDVLFVDASREFV----SGKNQNTLSDE 446 Query: 448 QRRQILDIYVSRENGK 463 Q +I+ Y R + Sbjct: 447 QIAKIMRTYRERTEVE 462 >gi|229550755|ref|ZP_04439480.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus rhamnosus LMS2-1] gi|229315866|gb|EEN81839.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus rhamnosus LMS2-1] Length = 540 Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 121/577 (20%), Positives = 209/577 (36%), Gaps = 73/577 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53 M+E T A+ L + +W A+ L G +++ +L R L Sbjct: 1 MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100 V KY + +LE Y NT Y + L +T ++L Sbjct: 61 NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150 + + + + DFS A ++ + L + + + Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ + YE+LI +F S+ + A +F TPR V + ++ +RT+Y Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQR----NAGDNQVRTIY 236 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+G L + HV D ++ HGQEL T+ + +++ + D Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288 Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +++ G TLSKD + F + NPP+ W + K RF Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S FL+H L+ G IVL LF G E +IR+ LL ++ Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+AI+ LP ++F T+I T + IL KT V I+A+ + +N + + Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 ++I+ Y +R++ K++ + + P R + L+ Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPVEIKENDYNLNIP-RYVDTFEPEPEIDLDQVKADL 502 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 K S + Q+ + E+ Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQINDQSKPEAHNE 539 >gi|317130966|ref|YP_004097248.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522] gi|315475914|gb|ADU32517.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522] Length = 488 Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 112/472 (23%), Positives = 196/472 (41%), Gaps = 48/472 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L ++W +A L G D+ + I P L+RL + + G Sbjct: 5 SLEKLERYLWGSANFLRGHIDAGDYKQFIFPLLFLKRLCDVYD---EEYNDSLNTLGEDF 61 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + F+ G+ +N ++ +G T + + + + IF D +++ R Sbjct: 62 DENHRFIIPKGH-HWNDIRKKVNNIG-TAIQTAMAEIEKANIGRLEGIFGDAQWTNK-DR 118 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + LL + ++FS L V + + YE+LI++F + A++F + R +V L Sbjct: 119 LPDS-LLKDLIEHFSQQTLSLQNVSEDELGQAYEYLIKKFADDSGHTAQEFYSNRTIVRL 177 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 T LL P ++YDPTCG+GG L + H+ + G ++ L GQE Sbjct: 178 MTELL----------EPNPKESVYDPTCGSGGMLLLSALHLKEKGKEYR---SLRLFGQE 224 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302 + T ++ M + +E I +G TL F ++F L+NPP+ Sbjct: 225 INLITSSIAKMNMFLHGIEDFE-------ILRGDTLENPAFIKNDKLRQFDIVLANPPYS 277 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + + GR G P S FL H+ L+ GR AI+ Sbjct: 278 IKRWN-----RERWETDPYGRNIYGTPPKSRADYAFLQHIIKSLKADT---GRCAILFPH 329 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 LF E E+R L+++D+IE I+ L ++LF+ + + + K E+R+GK+ Sbjct: 330 GVLFR----DAEQEMRENLVKSDVIECILGLGSNLFYNSPMEACVIFCRTNKKEDRKGKI 385 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473 INA + R I+ + +I +Y ++ FS +++ Sbjct: 386 LFINAINQVRRERTMS----YIDPEHIEEIKGVYDEFKSINGFSNVVEVDEV 433 >gi|307608918|emb|CBW98318.1| putative type I site-specific deoxyribonuclease LldI chain protein [Legionella pneumophila 130b] Length = 533 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 99/487 (20%), Positives = 178/487 (36%), Gaps = 70/487 (14%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---------GGSNI 67 + G + IL L+ + + +++Y + Sbjct: 28 AACDTFRGTISADTYKDFILTMLFLKYISDVWQDHFDEYQKQYGDEPELIHEMMKNERFV 87 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------------SFSDNAKAIF 115 E +K S + + + L I DNAK++F Sbjct: 88 IPEIILKNEDGSVRDQFQATFKNLWERRHEPGNGERIDLCLHAIEEANGTKLRDNAKSVF 147 Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170 +D F+ +K +L + ++F+ EL+ ++ N YE+LI+ F + Sbjct: 148 QDISFNTDKLGEEKQKNTILRHLLEDFAKPELNLRPSRVAGLDIIGNAYEYLIKHFAASG 207 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L LL P ++ DP CG+G L + + Sbjct: 208 GQKAGEFYTPPEVSSLMATLL----------DPQPGDSICDPACGSGSLLMKCGRLIREN 257 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 GQE T ++ M + + + I+ G T+ Sbjct: 258 HH----QKNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDS 306 Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + F +NPPF +E +N GRF G+P + G F++H+ Sbjct: 307 KGHLMLFDIVTANPPFSLD-----KWGHEEAENDHFGRFRRGIPPKTKGDYAFILHMIET 361 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GR +V+ LF G S E +IR+ L+E +L++ ++ LP LF+ T I Sbjct: 362 LKPKT---GRMGVVVPHGVLFRG---SSEGKIRQKLIEENLLDTVIGLPEKLFYGTGIPA 415 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465 + I +K++ KV I+A + GK + ++ D +I++ Y R++ Sbjct: 416 AILIFKKQKSD---DKVLFIDAAKEF----KSGKNQNQLSQDNIDKIIETYKQRQSVDRY 468 Query: 466 RMLDYRT 472 L Sbjct: 469 AYLASLD 475 >gi|75907382|ref|YP_321678.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413] gi|75701107|gb|ABA20783.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413] Length = 516 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 131/549 (23%), Positives = 221/549 (40%), Gaps = 55/549 (10%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAV 55 M E G+ SL N+IW A + G + + ILP +RL + V Sbjct: 1 MGERNGNGDKSLENWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAEKV 60 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGSTNTRNNLESY---IASFSDN 110 + AF +D N + +S+ S L Y IA + Sbjct: 61 GSRAKAFKLVAMDHNLVRFYLPLQPQNPDDPVWSVIRKLSDKIGEKLTDYLREIAKANPL 120 Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 I DF++T R L + + S L V ++ YE+LIR+F Sbjct: 121 LNGIINRVDFNATTHGQRDLDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE 180 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP++V + ++ P T+YDP CG+ G L + Sbjct: 181 GSGQSAGEFYTPKEVGLIMAKIM----------QPEPGMTIYDPCCGSAGLLIKCQLVLQ 230 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 + + L +GQE P T A+ M+I +E I+ G T F Sbjct: 231 ESQGATEKFAPLQLYGQEYTPNTWAMANMNMIIHDMEG--------KIEIGDTFRHPKFM 282 Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMHL 342 +F ++NP + +KW EK++ ELGRF G G P S ++ H+ Sbjct: 283 QAGKLAQFERVVANPMWNQKW-----FTEKDYDGDELGRFPKGAGYPGSS-ADWGWVQHI 336 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNG---RAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 L+ G+AAIVL + G + E E+R+W +E DLIE ++ LP +LF+ Sbjct: 337 LASLDKT----GKAAIVLDTGAASRGSGNANKNKEKEVRKWFVEQDLIEGVIYLPQNLFY 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS- 458 T+ L L+ K +ER+GK+ INA+ ++ G + I D++ +I + +++ Sbjct: 393 NTSAPGILLFLNRAKPKERQGKLFFINASLVFAK----GDPKNYIPDEEIERIANTFLTW 448 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 RE KFS ++ + + P R I ++ + + ++ + + Sbjct: 449 REEEKFSLIVYKDKIAHNDYNI-SPSRYIHITEEEDFRPIAEILEELEVLEKEAAETNKL 507 Query: 519 LKPMMQQIY 527 L ++ + Sbjct: 508 LMKVLGRYQ 516 >gi|314934744|ref|ZP_07842103.1| type I restriction-modification system, M subunit [Staphylococcus caprae C87] gi|313652674|gb|EFS16437.1| type I restriction-modification system, M subunit [Staphylococcus caprae C87] Length = 518 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 114/548 (20%), Positives = 209/548 (38%), Gaps = 74/548 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ +F IL R L +E T + + + Sbjct: 9 QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSARLLAEDNITYSE 68 Query: 66 NIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114 ++ E + + F E S L + E I S+ K + Sbjct: 69 AMNNEDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFE--IEDLSNAIKNVENSTR 126 Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158 F+D D +S +RL L+ K+ N S + + ++ + Sbjct: 127 GHESEDDFIHLFDDMDLNS--SRLGNTNAARTKLIGKVMMNISTLPFVHSDLEIDMLGDA 184 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ V + ++ D + L R++YDPTCG+G Sbjct: 185 YEYLIGQFAANAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGS 236 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L +GQE T+ + ML+ + + I+ Sbjct: 237 LLLRVGREAKVRN----------YYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIEN 281 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G TL G++F ++NPP+ KW + ++ E + L S F Sbjct: 282 GDTLEDPAHRGEQFDAVVANPPYSAKWSAEPSFLDDERFSDY-----GKLAPKSKADFAF 336 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397 + H+ L+ G A+VL LF G A E IR++L+E + ++A++ LP +L Sbjct: 337 IQHMIYHLDDE----GTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANL 389 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + + +K + V I+A+ + GK + + D+ +I++ Y Sbjct: 390 FFGTSIPTCVLVF--KKCRKADDDVVFIDASQSFEK----GKNQNHLTDEDVEKIVETYS 443 Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 RE K+S + + P + ++ + + + + + Sbjct: 444 KRETIDKYSYVASLDEIKENDYNLNIPRYVDTFEEEEPIDLDQVQQQLKDIDKEIANVES 503 Query: 517 DILKPMMQ 524 +I + + + Sbjct: 504 EINEYLKE 511 >gi|32455519|ref|NP_862271.1| hypothetical protein pRV500_p03 [Lactobacillus sakei] gi|24461246|gb|AAN61993.1|AF438419_3 HsdM [Lactobacillus sakei] Length = 510 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 107/554 (19%), Positives = 201/554 (36%), Gaps = 61/554 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + T + + +W+ A+ L G + + V+L L+ + + ++ + Sbjct: 1 MAKKTAEL-KIEDALWQAADQLRGSMDASQYRNVVLGLIFLKYVSDSFNEKYESLIK--- 56 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKA 113 + + A F+ E + S + I +D K Sbjct: 57 -SDYPEDAEDRDMYTAENIFWLPKEARWDVIASDAKTPEIGETIDKAMEAIERENDQIKG 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSE 172 + S + ++ L + S I++ + + V+ +Y++ + F ++ + Sbjct: 116 VLPKNYASPDLDKV----RLGGVIDLISNIKVGDEESRKNDVLGRVYDYFLSNFAAQEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TPR +V +L +YDP G+GG + V + Sbjct: 172 NGGEFYTPRSIVRTLVEML-----------EPYKGRIYDPAAGSGGMFVQSEEFVREH-- 218 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + L +GQE P T + + IR +++D QG T + DL G+RF Sbjct: 219 -QGVISDLSVYGQEANPTTWKLAKMNLAIRGIDNDFGPH------QGDTFTNDLHKGRRF 271 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 Y L+NPPF K K + R+ G+P + + ++ H+ +KL Sbjct: 272 DYILANPPFNLKEWGAD-------KLQDDSRWVYGVPPEGNANYAWIEHMISKLAPD--- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+A VL++ L E IR+ +LE D I+AIVALP +F+ T I LW + Sbjct: 322 -GKAGFVLANGALSTSTKE--EYAIRKAILEADKIDAIVALPGQMFYSTQIPVSLWFVDM 378 Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 K +R G+ I+A +L K + +I D Y + Sbjct: 379 NKASSDERKRNGETLFIDARELGFMADRTHK---EFAREDIAKIADTYHAYRGTNDQVYE 435 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 D F + + ++L L + ++ + + Q Sbjct: 436 DVPGF-SKAAMIEEIRENDYVLTPGRYVGLAER---QDDGEPYEEKMARLTSELSDQFKK 491 Query: 529 YGWAESFVKESIKS 542 E +++++K Sbjct: 492 SAELEEQIRDALKE 505 >gi|99078524|ref|YP_611782.1| type I restriction-modification system, M subunit [Ruegeria sp. TM1040] gi|99035662|gb|ABF62520.1| type I restriction-modification system; M subunit [Ruegeria sp. TM1040] Length = 499 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 91/470 (19%), Positives = 182/470 (38%), Gaps = 53/470 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63 + + + W + G + + +L L+ + + +++ Y Sbjct: 5 TQSEINKAAWGACDTFRGVVDPSIYKDYVLTMLFLKYVSDVWKDHKASYAAHYPDSPELV 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF--S 121 + ++ E+F SF L + + + +F+D F + Sbjct: 65 AAMMERETFKLPETASFDALHGRRHEPGNGERIDKALHAIEEANGSKLRDVFQDISFNSN 124 Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178 +K +L + ++F+ ++L P V + ++ YE+LI RF + + A +F Sbjct: 125 KLGDEEQKNDILRHLLEDFAKTALDLRPSRVGNLDIIGGAYEYLISRFAATAGKKAGEFY 184 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L L+ P + DPTCG+ L + + GS Sbjct: 185 TPAEVSELMARLV----------DPQPGDDICDPTCGSASLLMKCGRLIREGGSKA---- 230 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFH 293 GQE T A+ + + E + I+ G T+ + F Sbjct: 231 -YALFGQEAIGSTWALAKMNLFLHGEE-------NHQIEWGDTIRNPKLRTSDDMLRHFD 282 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + + + RF G+P + G F++H+ L+ Sbjct: 283 VVVANPPFSLDKWGVES-----AEADKFARFRRGIPPKTKGDYAFILHMIETLKPKT--- 334 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR A+V+ LF G S E +IR L+E++L++A++ LP LFF T I + + + Sbjct: 335 GRMAVVVPHGVLFRG---SSEGKIRHKLIEDNLLDAVIGLPEKLFFGTGIPSAILVFRKD 391 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 K ++ V ++A+ + + G + ++ +I+ + +R+ + Sbjct: 392 KADDS---VLFVDASREFVA----GTNQNALDMTLIEKIVATHQTRQTVE 434 >gi|332285463|ref|YP_004417374.1| Type I restriction-modification system, M subunit [Pusillimonas sp. T7-7] gi|330429416|gb|AEC20750.1| Type I restriction-modification system, M subunit [Pusillimonas sp. T7-7] Length = 520 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 95/541 (17%), Positives = 199/541 (36%), Gaps = 67/541 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65 + +W A+ L + ++ ++L ++ + + R+A+ +++ G Sbjct: 3 QDIKKTLWAAADKLRANMDAAEYKHLVLGLIFVKYISDSFAAHRAALTKRFADQGDDYVL 62 Query: 66 ---------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSD 109 + E A F+ L + + ++ I + + Sbjct: 63 PDADEALIASELEERDYYTAANIFWVPEAARWEALRAAAKQPDIGKRIDDALTAIEAENP 122 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168 K I + + + G L ++ S I D ++ +YE+ + +F S Sbjct: 123 KLKGILDKRYGRAQLPD----GKLGELVDMISTIGFGGDANTARDILGQVYEYFLGQFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + F TP +V+ A+L +YDP CG+GG + + Sbjct: 179 AEGKKGGQFYTPASIVNTLVAVLAPHKG-----------QVYDPCCGSGGMFVQSEKFIE 227 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G + + +GQE P T + + IR ++ + ++ + T +++ Sbjct: 228 AHGGNIG---DVSIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA------DTFTRNQHP 278 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 R + L+NPPF R+ G P + + +L H+ + L+ Sbjct: 279 DLRADFILANPPFNIS-------DWWHGSLEGDPRWQYGDPPKGNANYAWLQHMLHHLKP 331 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GRA IVL++ + + + E IR +++ D++E ++ALP LFF T I LW Sbjct: 332 T----GRAGIVLANGSMSSS--QNNEGVIRAAMVDADVVEVMIALPGQLFFNTQIPACLW 385 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSR 466 L+ +K +R+G+V I+A + I + ++D +I + + E + Sbjct: 386 FLAKQK--KRKGEVLFIDARKMGRMISRV---QAELDDAAITRIAETVAAWRGEVEDGAT 440 Query: 467 MLDYRTF-GYRRIKV--LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + +Y+ G+ R + + E + + Q + + M Sbjct: 441 ITEYQDVPGFCRSVPLAEIAQHGHVLTTGRYVGAEEVEDDDEAFAEKMQKLTEKLGEQMA 500 Query: 524 Q 524 + Sbjct: 501 K 501 >gi|37680390|ref|NP_934999.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] gi|37199137|dbj|BAC94970.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] Length = 509 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 117/528 (22%), Positives = 211/528 (39%), Gaps = 54/528 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +W AE L G +D+ + + P +RL + E + Sbjct: 15 NKNKLEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLSDVYLEEYNEALELHEG----- 69 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + F E S + +T + +++ I + ++ +F D ++ Sbjct: 70 -DAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQWT 128 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + ++FS I L +V + YE+LI++F + A +F T R Sbjct: 129 NK-ERLPDH-LLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 186 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VVHL T ++ + YDPTCGTGG L +A V D S + + Sbjct: 187 TVVHLMTRIM----------KLKPGESAYDPTCGTGGMLLNA---VMDLRSQGEEWRGVH 233 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 +GQE+ T A+ M + +E ++ +G TL F K+F + Sbjct: 234 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVMRGDTLGDPKFIENDQLKQFDVIFA 286 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+ K ++ GR G+P F H+ L+ GRAA Sbjct: 287 NPPYSIK-----KWNREKFAADPYGRNMYGVPPQGCADYGFYTHIIKSLKPDT---GRAA 338 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 ++ LF E IR+ ++E+D+IEA++ L +LF+ + + + + +L+ K E Sbjct: 339 MLWPHGVLFR----DSEQAIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKPFE 394 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR 476 R+ K+ IN + T R ++DD + + Y + +G + ++D Sbjct: 395 RKNKILFINGVEHVTRERA----HSRLSDDDLDVLCEAYFKPDSHGDIAALVDLDDIREN 450 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + PL + D A W+ + + + + + Sbjct: 451 QHNLSIPLYVQAQTDTEVHDIEHAIEEWKVSRVQLKKQTNKLFQSLAE 498 >gi|89902764|ref|YP_525235.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] gi|89347501|gb|ABD71704.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] Length = 514 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 97/540 (17%), Positives = 204/540 (37%), Gaps = 55/540 (10%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +WK A+ L + ++ V+L L+ + + E + ++ + G++ + + Sbjct: 15 LEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELFTKLQGGAGDYAGADPEDK 74 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123 K F+ + S L + ++ I + + K + F+ Sbjct: 75 DEYKAE-NVFFVPPQARWSFLLGKAKQPDVGSHVDAAMDAIEKENPSLKGVLPKV-FARQ 132 Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 L+ A L + I L V+ +++E+ + F + F TPR Sbjct: 133 --NLDPAS-LGGLIDLVGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPRS 189 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V L +L ++DP CG+GG + V + + Sbjct: 190 IVELLVVML-----------EPYKGRVFDPCCGSGGMFVQSEKFVTEHQGRIN---DISI 235 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 GQE T + + IR +++ + ++ + D + + ++NPPF Sbjct: 236 FGQESNQTTWRLAKMNLAIRGIDASQVKWNNEG-----SFLNDAHKDVKADFIIANPPFN 290 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + + GR+ G+P + + +L H + L GRA +VL+ Sbjct: 291 VSDWNGE-------LLRKDGRWQYGVPPTGNANFAWLQHFNHHLAP----NGRAGVVLAK 339 Query: 363 SPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTDLFFRTNIATYLWILS--NRKTEERR 419 L + SGE +IR+ + ++ +LI+ IV LP LF T I LW ++ R+ Sbjct: 340 GALTS--KSSGEGDIRKAMVVDGNLIDCIVNLPAKLFLNTQIPAGLWFMNRARNNGHPRK 397 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-I 478 G++ I+A +L I + R ++D+ +++ +Y + G+ S D G+ + Sbjct: 398 GEILFIDARNLGHLINR---RTRELSDEDIQKVASVYHAWRTGE-SEYAD--EKGFCASV 451 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + R + ++L L + + S ++ ++++ + + Sbjct: 452 PLARVAELDYVLTPGRYVGLPDEEDDFDFAERFASLKAELEAQLLEEAELNQAIAENLAK 511 >gi|297568980|ref|YP_003690324.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfurivibrio alkaliphilus AHT2] gi|296924895|gb|ADH85705.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfurivibrio alkaliphilus AHT2] Length = 538 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 107/554 (19%), Positives = 207/554 (37%), Gaps = 70/554 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 S +W+ A+ L G + +++ V+L L+ + E + + + G + Sbjct: 25 TKSFEQTLWETADRLRGTVESSEYKHVVLSLIFLKFVSDKFEQRKRELIAE----GQGDY 80 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYI---ASFSDNAKAIFEDFDF 120 FY E ST+ + +++ + + + D F Sbjct: 81 VDMVEFYTMKNVFYLPEEARWSTIRKAAKQDDIAVRIDTALHTVEKNNPALRGALPDNYF 140 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 S + K L + + + I+ D V+ +YE+ + +F + +G +F TP Sbjct: 141 SRLGLDVSK---LAALIDSINNIDTVAD-HEQDVVGRVYEYFLGKFAATEGKGGGEFYTP 196 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + VV L ++ +YDP CG+GG ++ V + Sbjct: 197 KCVVKLIAEMI-----------EPFRGKIYDPCCGSGGMFVQSVKFVESH---RGSKKDI 242 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +GQE T+ + + IR + ++ + T KD + + ++NPP Sbjct: 243 SIYGQEYTSTTYKLSKMNLAIRGIAANLGEAPA------DTFFKDQHPDLKADFIMANPP 296 Query: 301 FGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 F ++ + R+ G +P + + +++H+ +KL + G A V Sbjct: 297 FNL------KEWRAANELTDDPRWAGYEVPPTGNANYAWILHMVSKL----SENGVAGFV 346 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--- 416 L++ + SGE IRR L+ENDLI+ ++A+P LF+ T I LW ++ K Sbjct: 347 LANGSMSTN--TSGEGLIRRKLIENDLIDCMIAMPGQLFYTTQIPVCLWFITRNKKAQRI 404 Query: 417 ---------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466 +RRG+ I+A ++ T I K + D +I Y + K Sbjct: 405 EGHSDSSHRDRRGETLFIDARNMGTMIDRTHK---ELTCDDIAEIARTYHAWRGEAKDGA 461 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADIT--WRKLSPLHQSFWLDILKP 521 D F + + ++L A +E D +K++ L Q+ + + + Sbjct: 462 YQDQPGFC-KAATLAEIKANDYVLTPGRYVGAAEIEDDGIPFEQKMTELSQTLYRQMAEA 520 Query: 522 MMQQIYPYGWAESF 535 E+ Sbjct: 521 EKLDAVIRRNLEAL 534 >gi|224437017|ref|ZP_03657998.1| type I restriction-modification system specificity subunit [Helicobacter cinaedi CCUG 18818] gi|313143489|ref|ZP_07805682.1| type I restriction-modification system [Helicobacter cinaedi CCUG 18818] gi|313128520|gb|EFR46137.1| type I restriction-modification system [Helicobacter cinaedi CCUG 18818] Length = 500 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 100/538 (18%), Positives = 190/538 (35%), Gaps = 68/538 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + L ++ A+ L + ++ ++L L+ + + E + + Sbjct: 1 MAKVKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 59 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKA 113 + +A F+ + STL S +L+ I + K Sbjct: 60 DAEDKD------EYIAKNIFFVPQDSRWSTLLSKAKSPQIGKDLDYALDLIEKDNPQLKG 113 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + + + L + I L+ + D + +I+E+ + F + Sbjct: 114 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSDI-LGHIFEYFLGEFALSEGKK 168 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP+ VV L A+L ++DP CG+GG + V + Sbjct: 169 GGQFYTPKSVVELLVAML-----------EPYNGRVFDPCCGSGGMFVQSERFVREHQGK 217 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQE T + + +R+++S + S+ + D + Sbjct: 218 I---SDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 269 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + R+ G P ++ + ++ H + L Sbjct: 270 FIIANPPFNATDWGSEA-------LENDVRWQYGTPPSTNANYAWISHFIHHLAPK---- 318 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA VL+ L + S E +IR+ L+E++LIE IV LP LF T I LW + Sbjct: 319 GRAGFVLAKGSLTSN--TSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 376 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----ENGKFSRML 468 K I+A L I K RI+N D +I + Y +NG +S +L Sbjct: 377 KPHNNT---LFIDARSLGELINR---KNRILNKDDIDKITETYHKWQKAQEQNGDYSDIL 430 Query: 469 DYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 G+ + + + ++L L D ++ + ++ Sbjct: 431 -----GFCKSVSKEEMANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEE 483 >gi|261339076|ref|ZP_05966934.1| hypothetical protein ENTCAN_05288 [Enterobacter cancerogenus ATCC 35316] gi|288318911|gb|EFC57849.1| ribosomal protein L11 [Enterobacter cancerogenus ATCC 35316] Length = 539 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 118/574 (20%), Positives = 211/574 (36%), Gaps = 84/574 (14%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R ++++ G +++E F + Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEVFYQ 75 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY S + ++NL S I + K D FS Sbjct: 76 Q-DNIFYLPEAARWSFIKQNAKQDNLAVLIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + + E RF G P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNDAELTEDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRARMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +G+ I+A +L T + K + D I + Y + Sbjct: 400 GYRNRQGETLFIDARNLGTMMNRTTK---ELTADDIATIAETYHA--------------- 441 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD-ILKPMMQQIYPYGWA 532 R L + LA+ E + K++ + + D +L P Sbjct: 442 --WRSTPEE-LAERVKRGDSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGAAEQED 498 Query: 533 ESFVKESIKSNEAKTL--KVKASKSFIVAFINAF 564 + E+ +KTL ++K ++ A Sbjct: 499 DGVAFETKMRELSKTLFEQMKQAEELDNAIRQNL 532 >gi|168179782|ref|ZP_02614446.1| type I restriction-modification system, M subunit [Clostridium botulinum NCTC 2916] gi|182669249|gb|EDT81225.1| type I restriction-modification system, M subunit [Clostridium botulinum NCTC 2916] Length = 511 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 109/489 (22%), Positives = 195/489 (39%), Gaps = 69/489 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ A+L +W A DL G+ + +F IL R L +E + ++ Sbjct: 1 MSVSREQQANLHARLWDIANDLRGNMEANEFKNYILGLIFYRYLSEKVEGRAENLLKEDN 60 Query: 61 AFGGSNIDLESFVKV------AGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSD 109 + + + + A ++ +Y S+L N + I ++ Sbjct: 61 ISYREAWEDDEYRQALQEELLAQIGYFIEPKYLFSSLMKEIETGNFDVEMLQGSINDITE 120 Query: 110 NAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + DF ++ ++ L+ K+ N S I+ D V+ + Sbjct: 121 STLGHKSQDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDVLGD 180 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI +F + + A +F TP+ V + L+ L +++YDP CG+G Sbjct: 181 AYEYLISQFAATAGKKAGEFYTPQQVSKILAKLVTVGKKDL--------KSVYDPACGSG 232 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L K + +GQEL T+ + ML+ + + +I+ Sbjct: 233 SLLLRVS----------KEANVRKFYGQELTSTTYNLARMNMLLHDVSYER-----FDIR 277 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGS 335 TL +F ++NPP+ KW DK ++ E RF L S Sbjct: 278 NDDTLENPQHIDMKFDAVVANPPYSAKWSADKKFLDDE-------RFSAYGKLAPKSKAD 330 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394 F+ H+ +L N GG A+VL LF G A E IR++L+E + ++ ++ LP Sbjct: 331 YAFVQHMIYQL----NEGGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDGVIGLP 383 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 ++FF T+I T + + +K+ E V I+A+ + GK + ++ D +I+ Sbjct: 384 ANIFFGTSIPTVILVF--KKSRENSDNVMFIDASREFEK----GKNQNVLKDKDVEKIIS 437 Query: 455 IYVSRENGK 463 Y+ RE Sbjct: 438 TYIKRETVD 446 >gi|312886110|ref|ZP_07745731.1| type I restriction-modification system, M subunit [Mucilaginibacter paludis DSM 18603] gi|311301409|gb|EFQ78457.1| type I restriction-modification system, M subunit [Mucilaginibacter paludis DSM 18603] Length = 519 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 108/567 (19%), Positives = 197/567 (34%), Gaps = 78/567 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT+ + + + +WK + G + + +L ++ L + A +KY Sbjct: 1 MTKI--TQKDINDAVWKACDTFRGSIDPSVYKDYVLTMLFIKYLSDVHDDKMDAYLKKYN 58 Query: 61 AFGGSNIDLESFVKVAGY-SFYNTSEYSLSTLGSTNTRNNLESYIA-------------S 106 D+E + + F + L ++ N+ I Sbjct: 59 G------DMERAKRAMQHERFIVPEHSHFNFLYNSRNEANIGELINIALADLEEANREKL 112 Query: 107 FSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEH 161 +S++ IF++ DF+ +K L + +F+ + L P + ++ Y Sbjct: 113 YSEDGAGIFQNIDFNSSKLGEPKDKNTRLKHLLLDFNKDALNLRPSHLDGVDIIGGAYMF 172 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI F S+ + A +F TP++V L L + DPTCG+ L Sbjct: 173 LIENFASDAGKKAGEFFTPKEVSTLIAKL----------TKSKPGSRICDPTCGSASLLI 222 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A V +GQE T A+ V M + + + I+ G T Sbjct: 223 KAGEEVGSDN--------FSLYGQEANGSTWALAVMNMFLHGFD-------NATIRWGDT 267 Query: 282 LSKDLFTG----KRFHYCLSNPPFGKKWE-------KDKDAVEKEHKNGELGRFGPGLPK 330 + +F ++NPPF DK V + + + RF G+P Sbjct: 268 IRNPKLKEGDMLMKFDTVVANPPFSLDKWGKVEDKEGDKTTVSYDPETDKYNRFWRGVPP 327 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S G F+ H+ L GRA +V+ LF S E IR+ +E +L+EA+ Sbjct: 328 KSKGDWAFISHMIETLNEH----GRAGVVVPHGVLFRS---SSEGRIRQRTIEENLLEAV 380 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LFF T I + I + +K+ I+A+ + + +N + + Sbjct: 381 IGLPANLFFGTGIPAAILIFNKQKSS---NNFLFIDASKQYKNAKN----QNRLRARDIE 433 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+ Y GK + F Y + L+ + ++ + Sbjct: 434 LIVKTYRDFAEGKLKPGIVEEKFSYVA-TPEEVQENDYNLNLPRYVDTFEEEPEVDIAKV 492 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVK 537 + + Q + +K Sbjct: 493 QEEIIGLEEELSKVQHEINQYLNQLIK 519 >gi|121609950|ref|YP_997757.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] gi|121554590|gb|ABM58739.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] Length = 520 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 97/479 (20%), Positives = 187/479 (39%), Gaps = 68/479 (14%) Query: 2 TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 + ++L ++K A+ L G+ + +D+ V L L+ + E ++ Sbjct: 4 NDTNKKGSNLGFEAEMFKAADKLRGNMEPSDYKHVALGLIFLKYISDTFEARHKSLLA-- 61 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112 + +A F+ + S L + + + + I + + Sbjct: 62 ---DNPQDVEDRDAYLADNVFWVPKDARWSHLQAHAKQPTIGTLIDDAMRAIEKDNATLQ 118 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVS 171 ++ + ++ +L ++ SGI L+ + ++ +YE+ + +F Sbjct: 119 SVLPKDYARPALNKV----MLGELIDLISGITLNQEGHASRDILGRVYEYFLGQFAGAEG 174 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP VV +L +YDP CG+GG + V + G Sbjct: 175 KRGGEFYTPGSVVRTLVEML-----------EPYQGRIYDPCCGSGGMFVQSEKFVQEHG 223 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTG 289 + +GQE T + + +R ++SD I+ + + KD Sbjct: 224 GRIG---DIAIYGQESNHVTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRD 272 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + Y L+NPPF + E R+ G+P + + + +L H+ + L Sbjct: 273 LKADYILANPPFNISDWGGD-------RLREDVRWKFGVPPVGNANYAWLQHIVHHLAP- 324 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G A +VL++ + + SGE +IRR ++E D+++ +VALP LF+ T I LW Sbjct: 325 ---NGTAGVVLANGSMSSS--QSGEGDIRREMVEQDIVDCMVALPGQLFYSTQIPACLWF 379 Query: 410 LSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 L+ K+ +RR +V I+A L + RR + D R+I Y + Sbjct: 380 LARDKSNGRAGKAYLRDRRKEVLFIDARKLGVLVDRT---RRELTDADVRRIAGTYHAW 435 >gi|257093459|ref|YP_003167100.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045983|gb|ACV35171.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 515 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 105/558 (18%), Positives = 195/558 (34%), Gaps = 80/558 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------------ALEPTRSAV 55 + +W A+ L + ++ ++L ++ + +P Sbjct: 2 LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELARRFADPADDYY 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108 + D + + +V F+ L + + ++ I + Sbjct: 62 LDAADLIAEELEDRDYYREV--NVFWVPESARWEALRTAAKQPDIGKRIDDALTLIEVEN 119 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167 K I + + + G L ++ S I D V+ +YE+ + +F Sbjct: 120 PKLKGILDKRYARAQLPD----GKLGELVDLVSTIGFGADPGKARDVLGQVYEYFLGQFA 175 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + F TP +V A+L +YDP CG+GG + V Sbjct: 176 SAEGKKGGQFYTPASIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEKFV 224 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + +GQE P T + + IR ++ + R+ + T +++ Sbjct: 225 EAHG---GKLGNVSIYGQESNPTTWRLAAMNLAIRGIDFNLGREPA------DTFTRNQH 275 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 R + L+NPPF R+ G P + + +L H+ L+ Sbjct: 276 PDLRADFILANPPFNVS-------DWWHGSLEGDPRWEFGTPPQGNANYAWLQHMLYHLK 328 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRA IVL++ + + + E +IRR +++ D++E ++ALP LFF T I L Sbjct: 329 PS----GRAGIVLANGSMSSS--QNSEGDIRRAMVDADVVEVMIALPGQLFFNTQIPACL 382 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 W L+ K G+V I+A L I + ++D+ +I + + + Sbjct: 383 WFLTKHKAARP-GEVLFIDARKLARMISRV---QTELSDEVIDRIAGTVAAWRDEADAEE 438 Query: 468 LDYRTFGYRRIK----------VLRPLRM----SFILDKTGLARLEADITWRKLSPLHQS 513 GY R VL P R D A +T + + + Sbjct: 439 YQDIP-GYCRSVNLAEIADHGHVLTPGRYVGAEEVEDDDEAFADKMQKLTEKLGEQMAKG 497 Query: 514 FWLDILKPMMQQIYPYGW 531 LD L + Q++ G+ Sbjct: 498 AELDAL--IRQKLGGLGY 513 >gi|227505724|ref|ZP_03935773.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum ATCC 6940] gi|227197692|gb|EEI77740.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum ATCC 6940] Length = 543 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 90/478 (18%), Positives = 172/478 (35%), Gaps = 62/478 (12%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + L + +WK A+ L G + + ++L L+ + A + R+ +R + G Sbjct: 16 ATTLKELKDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRAELRAEGEERGD 75 Query: 65 -----SNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + F+ + ++ S + S + Sbjct: 76 SEEYIQEDLEDIDAYREKNVFWVDPIARWTFLRDNSKGKSADAGQEYQSIGKLIDNAMKQ 135 Query: 118 FDFSST--IARLEKA--------GLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRR 165 + + L L ++ FS + ++ +YE+ + + Sbjct: 136 LMLDNESLLGTLPTNFASESVDQRRLGELIDLFSTTRFTAEGPERARDLLGEVYEYFLEK 195 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + +F TPR VV +L +YDP CG+GG A Sbjct: 196 FARAEGKRGGEFYTPRPVVRTLVEIL-----------EPTQGRVYDPCCGSGGMFVQAEK 244 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + +GQEL T + + I + S + + T ++D Sbjct: 245 FLETTEKDRTALA---IYGQELNERTWRMAKMNLAIHAISSAGLGE-----RWADTFARD 296 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + K+ Y ++NPPF ++ +N E R+ G+P + + ++ H+ +K Sbjct: 297 IHPDKQMDYVMANPPFN---------IKDWSRNEEDTRWKYGVPPKRNANFAWMQHIISK 347 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L G A + + N SGE +IR+ ++E+D++ ++ALP LF T I Sbjct: 348 LTPQGEAGVVMA---NGTMTSNS---SGEGDIRKAMVEDDIVSCVIALPAQLFRGTQIPV 401 Query: 406 YLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 +W + K +R +V I+A +L I R +D+ ++I D Y Sbjct: 402 CVWFFAKDKKAGSKGTIDRTNQVLFIDARELGHMIDRTE---RTFSDEDIQKIADTYR 456 >gi|167620605|ref|ZP_02389236.1| type I restriction-modification system, M subunit [Burkholderia thailandensis Bt4] Length = 542 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 106/505 (20%), Positives = 187/505 (37%), Gaps = 71/505 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE S + W + G + IL L+ + + + +Y Sbjct: 1 MTEK-LSQQEVNATAWAACDTFRGVVDPAQYKDYILVMLFLKYVSDLWNDHYAEYKTQYG 59 Query: 61 AFGG---SNIDLESFV---------KVAGYSFYNTSEY--SLSTLGSTNTRNNLESYIAS 106 ++ E F+ A T + + L N+ I Sbjct: 60 DDDERIRRKLERERFILPYVELKEDDPATGKSRVTDRFLGDFNALYERRNEPNIGELINI 119 Query: 107 FSDNAKA--------IFEDFDFS---STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 D+ + +F + DF+ + ++ L + ++F+ ++L P V + V+ Sbjct: 120 VLDHIEDVNKAKLEGVFRNIDFNSEANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSEDVI 179 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 N Y +LI RFGS+ + A +F TP+ V L +AL P + DP+CG Sbjct: 180 GNTYIYLIERFGSDAGKKAGEFYTPKMVSRLLSAL----------ARPKPGDRICDPSCG 229 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L +A V SH G+E+ T A+ M I + + Sbjct: 230 SGSLLIEAAQMVEAQDSH-----NYALFGEEVNGATWALARMNMFIHSKD-------AAR 277 Query: 276 IQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I+ TL+ +F+ ++NPPF N RF G+P Sbjct: 278 IEWCDTLNSPALIEGDRLMKFNVVVANPPFSLD-----KWGADHADNDRFNRFWRGVPPK 332 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S G F++++ + GR A+V+ LF G A E IR+ L+E +L++A+V Sbjct: 333 SKGDWAFIVNMIERALPQE---GRVAVVVPHGVLFRGGA---EGRIRQKLIEENLLDAVV 386 Query: 392 ALPTDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 LP +LF T+I + + + E V ++A+ + GK + ++D+ Sbjct: 387 GLPGNLFPTTSIPVAILLFDRSREKGGPSEHVRDVLFVDASREFIP----GKNQNQLSDE 442 Query: 448 QRRQILDIYVSRENGKFSRMLDYRT 472 +I+ R + Sbjct: 443 HFEKIVTTVAERRIVDKYAYVASLD 467 >gi|304437971|ref|ZP_07397916.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369055|gb|EFM22735.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 538 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 104/537 (19%), Positives = 202/537 (37%), Gaps = 59/537 (10%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + S+A + IW A LWG ++ KVI+ LR + E + + + Sbjct: 36 MAKSKTSSAKIGFEKQIWDAAVKLWGHISAAEYRKVIVGLIFLRYISSVFEKRYAELVAE 95 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNA 111 G + + A F+ + S + + I + + Sbjct: 96 -----GDGFEDDPDAYEAENIFFVPENARWKLIASKAHTPEIGTVIDEAMRAIEADNKTL 150 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K + S + + +L ++ F+ +++ ++ YE+ I +F + Sbjct: 151 KNVLPKNYASPDLDK----RVLGEVVDLFTNMDMESAENTKDLLGRTYEYCIAQFAAYEG 206 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +V A+L P +YDP CG+GG + + G Sbjct: 207 KKGGEFYTPASIVKTIVAVL----------RPFSNCRVYDPCCGSGGMFVQSAKFIEVHG 256 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + GQE P+T + + IR ++++ + T DL+ + Sbjct: 257 GRRGA---VTVFGQESNPDTWKMAKMNLAIRGIDANLGEYQA------DTFFNDLYANLK 307 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + ++NPPF K + E R+ G+P + + ++ H+ + L+ Sbjct: 308 ADFIMANPPFNKDDWGQP-------QLKEDARWKYGVPPAGNANYAWIQHMISHLKP--- 357 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+ +VL++ L GE EIRR ++E DL+E I+ALP LF+ I LW ++ Sbjct: 358 -NGKIGLVLANGALST--QTGGEGEIRRKIIEADLVEGIIALPDKLFYSVTIPVTLWFIT 414 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K + +GK I+A + + K R +D+ +I D +V+ +NG+ + + Sbjct: 415 RNKQQ--KGKTLFIDARKMGAMVDR---KHRDFSDEDIDKIADTFVAFQNGRLDDVKGFC 469 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 F + ++L +E + L + + + Sbjct: 470 AFA----SLDDIAAQDYVLTPGRYVGIEEQEDDDEPFEDKMKRLTGELSELFAKSHE 522 >gi|257060099|ref|YP_003137987.1| N-6 DNA methylase [Cyanothece sp. PCC 8802] gi|256590265|gb|ACV01152.1| N-6 DNA methylase [Cyanothece sp. PCC 8802] Length = 522 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 120/544 (22%), Positives = 213/544 (39%), Gaps = 53/544 (9%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVR 56 + S SL ++IW A + G + + ILP +RL + + R Sbjct: 11 NNSNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAVKVKTR 70 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKA 113 EK + +L F + + +S+ S L Y IA + K Sbjct: 71 EKAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKG 130 Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 I + DF++TI R L + + S L V ++ YE+LIR+F Sbjct: 131 IIDRVDFNATIHGERELDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE-SG 189 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP++V + ++ P +YDP CG+ G L +A+ Sbjct: 190 KSAGEFYTPKEVGIIMAKIM----------QPQPGMAIYDPCCGSAGLLIKCQLVLAESQ 239 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--- 288 L +GQE +T A+ M+I +E I+ G + F Sbjct: 240 EKGGKYAPLQLYGQEYTGDTWAMANMNMIIHDMEG--------KIEIGDSFRFPKFKQGG 291 Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKL 346 +F ++NP + + W ++D E GRF G S ++ H+ L Sbjct: 292 NLAQFDRVVANPMWNQNWFTEQDYDGDEW-----GRFPQGAGFPGSKADWGWVQHIWASL 346 Query: 347 ELPPNGGGRAAIVLSSSPLFNG---RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + G++AIVL + G E E+R+W +E D+IE ++ LP +LF+ T+ Sbjct: 347 QPH----GQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLFYNTSA 402 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462 + IL+ K+E R+ ++ LINA+ + G + I+D+ +I+ +++ E Sbjct: 403 PGIILILNKAKSEARKHQLLLINASLEFAK----GDPKNYISDEGINRIVTAFLNWEEQD 458 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 KFSR++ + P R + + + + + IL + Sbjct: 459 KFSRIVSKEEIAKNDYNI-SPSRYIHVAEAEEFRPISEILQELEELESQAEETNRILMQV 517 Query: 523 MQQI 526 + + Sbjct: 518 LSKF 521 >gi|53803793|ref|YP_114323.1| type I restriction-modification system, M subunit [Methylococcus capsulatus str. Bath] gi|53757554|gb|AAU91845.1| type I restriction-modification system, M subunit [Methylococcus capsulatus str. Bath] Length = 526 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 102/508 (20%), Positives = 185/508 (36%), Gaps = 77/508 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE S + W + G + IL L+ + + + +Y Sbjct: 1 MTEK-LSQQEVNATAWAACDTFRGVVDPAQYKDYILVMLFLKYISDLWNDHYAEYKAQYG 59 Query: 61 AFGGS---------------NIDLESFVKVAGYSFYNTSEY--SLSTLGSTNTRNNLESY 103 + + + + L N+ Sbjct: 60 DDDERIRRKLERERFILPYVELKEDDQETGKSQV---IDRFLGDFNALYERRNEPNIGEL 116 Query: 104 IASFSDNAKA--------IFEDFDFS---STIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + D+ + +F + DF+ + ++ L + ++F+ ++L P V + Sbjct: 117 VNIVLDHIEDANKAKLEGVFRNIDFNSEANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSE 176 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ N Y +LI RFGS+ + A +F TP+ V L AL +P + DP Sbjct: 177 DVIGNTYIYLIERFGSDAGKKAGEFYTPKMVSRLLAAL----------ANPRPGDRICDP 226 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 +CG+G L +A V GSH G+E+ T A+ M I + Sbjct: 227 SCGSGSLLIEAAQWVEAQGSH-----NYALFGEEVNGATWALARMNMFIHSKD------- 274 Query: 273 SKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + I+ TL+ +F+ ++NPPF + A RF G+ Sbjct: 275 AARIEWCDTLNSPALIEGDRLMKFNVVVANPPFSLDKWGAEHADHDRF-----NRFWRGV 329 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 P S G F+ ++ + GR A+V+ LF G A E IRR ++E +L++ Sbjct: 330 PPKSKGDWAFITNMIERALPRE---GRVAVVVPHGVLFRGGA---EGRIRRAMIEENLLD 383 Query: 389 AIVALPTDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRII 444 A+V LP +LF T+I + + + E V ++A+ + GK + + Sbjct: 384 AVVGLPGNLFPTTSIPVAILLFDRAREKGGPREDVRDVLFVDASREFIP----GKNQNQL 439 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472 ++ ++I+ +R N + Sbjct: 440 SEAHFQKIVSTVAARRNVDKYAYVASLD 467 >gi|319744117|gb|EFV96490.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus agalactiae ATCC 13813] Length = 501 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 101/534 (18%), Positives = 200/534 (37%), Gaps = 62/534 (11%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T ++A++ +W A+ L G D+ KVI+ L+ + + + + ++ Sbjct: 3 KTNTSANIGFEKELWDAADSLRGHISAADYRKVIIGLIFLKYVSDSFTIKYNYLLKE--- 59 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAI 114 + + V+ F+ + + ++ I S + + + Sbjct: 60 --DEGFEEDRDEYVSENIFFVPQKSRWDYIAENAHSPEIGIILDDAMREIESENKSLVGV 117 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + + +L ++ F+ I + ++ YE+ + +F + + Sbjct: 118 LPKVYATPDLDK----RVLGEVVDIFTNINMFAHGNEKDLLGRTYEYCLEQFAAYEGKNG 173 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V +L +YDP CG+GG + V + + Sbjct: 174 GEFYTPTSIVKTIVEIL-----------KPFNGRVYDPACGSGGMFVQSETFVENHSGNI 222 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 L +GQE +T + M IR +E + + T DL + Y Sbjct: 223 N---NLSIYGQEANADTWKMAKINMAIRGIEPNFGPHQA------DTFIDDLHPTLKADY 273 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF K K + R+ G P S+ + ++ H+ + L G Sbjct: 274 IMANPPFNLKKWGAD-------KLVDDVRWKYGTPPDSNANYAWIQHMIHHLAP----NG 322 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 + +VL++ L SGE +IR+ ++E+DL+E IVALP LF+ I LW +S K Sbjct: 323 KIGLVLANGSL--SSTQSGEGDIRKAIIEDDLVEGIVALPAQLFYSVTIPACLWFISKNK 380 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 +++GK I+A +L + K R DD ++I + + + G G Sbjct: 381 --KQKGKTVFIDARNLGHMVDR---KHRDFTDDDIQKIAKTFEAFQEG-----TLENEKG 430 Query: 475 YRRIKVLRPL-RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + + +IL +E + L + +Q + Sbjct: 431 FCAVVETKAIAEQDYILTPGRYIGIEDKEEDSEPFEEKMERLTTELSELFKQSH 484 >gi|227892231|ref|ZP_04010036.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus salivarius ATCC 11741] gi|227865953|gb|EEJ73374.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus salivarius ATCC 11741] Length = 506 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 113/555 (20%), Positives = 215/555 (38%), Gaps = 65/555 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E T ++ +W+ A+ L G +++ V+L L+ + + E R + Sbjct: 1 MVEKTKEL-NIERDLWQAADKLRGSMDESEYRNVVLGLIFLKYVSDSFEEKRDEIL---- 55 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 E +A F+ E S + +N I +++ + Sbjct: 56 NSDYPEEVEEPDAYLAENIFWVPKEARWSVIQKAAKTPQVGEIIDNAMDAIEKNNNSLRG 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + S I + L + S I L D ++ +YE+ + +FG + Sbjct: 116 VLNKNYASPDIDK----TRLGGVVDLVSNISLKGDG-KLDLLGRVYEYFLNKFG--SGKT 168 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP+ +V ++ +YDP CG+GG + V + Sbjct: 169 GGEFYTPQSIVKTLVEMI-----------EPYRGRIYDPCCGSGGMFVQSGKFVQEHQGR 217 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 L +G+E P T + + IRR++++ + QG T + DL G+RF Sbjct: 218 IG---DLSIYGEESNPTTWKLAKMNLAIRRIDNNLGQ------YQGDTFTNDLHKGERFD 268 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + L+NPPF K + K E R+ G+P + + + ++ H+ +KL Sbjct: 269 FILANPPFNIKDWSGE-------KLREDARWKYGVPPVGNANYAWIQHIISKLTPD---- 317 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+A VL++ L E IR+ ++E+D I+AIVA+P +F+ T I LW + Sbjct: 318 GKAGFVLANGALSTSTKE--EYAIRKAIIEDDKIDAIVAIPDKMFYTTGIPASLWFIDMD 375 Query: 414 KT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 K+ +R G+ I+A +L + R +D+ ++I D Y + D Sbjct: 376 KSSDDERKRNGETLFIDARELGEMLDRT---HRGFSDEDIKKIADTYHAYRGTNDKEYKD 432 Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ ++ K+ + ++L L ++ + + +Q Sbjct: 433 IA--GFCKVAKIEDIAKNDYVLTPGRYVGLAEK---EDDGEPYEVKMERLTNELKEQFEE 487 Query: 529 YGWAESFVKESIKSN 543 ++ +KE +K Sbjct: 488 SNKLQAEIKEVLKEL 502 >gi|237752774|ref|ZP_04583254.1| type I restriction-modification system [Helicobacter winghamensis ATCC BAA-430] gi|229376263|gb|EEO26354.1| type I restriction-modification system [Helicobacter winghamensis ATCC BAA-430] Length = 507 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 96/539 (17%), Positives = 190/539 (35%), Gaps = 69/539 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + L ++ A+ L + ++ ++L L+ + + E + + Sbjct: 7 MAKVKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 65 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKA 113 + +A F+ + S+L S +L+ I + K Sbjct: 66 DAEDKD------EYIAKNIFFVPQDSRWSSLLSKAKSPQIGKDLDYALDLIEKDNPQLKG 119 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + + + L + I L+ + D + +I+E+ + F + Sbjct: 120 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSDI-LGHIFEYFLGEFALSEGKK 174 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP+ VV L A+L ++DP CG+GG + V + Sbjct: 175 GGQFYTPKSVVELLVAML-----------EPYNGRVFDPCCGSGGMFVQSERFVREHQGK 223 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQE T + + +R+++S + S+ + D + Sbjct: 224 I---SDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 275 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + R+ G P ++ + ++ H + L Sbjct: 276 FIIANPPFNATDWGSEA-------LENDVRWQYGTPPSTNANYAWISHFIHHLAPK---- 324 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA VL+ L + S E +IR+ L+E++LIE IV LP LF T I LW + Sbjct: 325 GRAGFVLAKGSLTSN--TSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 382 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------NGKFSRM 467 K+ I+A L I K RI+ +I + Y + +G++S + Sbjct: 383 KSHNNT---LFIDARSLGELINR---KNRILTQSDIAKITETYHKWQKAQEQKDGEYSDI 436 Query: 468 LDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 L G+ + + + ++L L D ++ + ++ Sbjct: 437 L-----GFCKSVSKEEIANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEE 490 >gi|242372574|ref|ZP_04818148.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis M23864:W1] gi|242349791|gb|EES41392.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis M23864:W1] Length = 518 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 108/495 (21%), Positives = 192/495 (38%), Gaps = 73/495 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ +F IL R L +E + + + + Sbjct: 9 QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEESSAKLLSEDNISYQE 68 Query: 66 NIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114 ++ + + + F E S L + E I S+ K + Sbjct: 69 AMNNDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFE--IEDLSNAIKNVENSTR 126 Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158 F+D D +S +RL L+ K+ N S + + ++ + Sbjct: 127 GHESEDDFIHLFDDMDLNS--SRLGNTNAARTKLIAKVMMNISTLPFVHSDLEIDMLGDA 184 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ V + ++ D + L R++YDPTCG+G Sbjct: 185 YEYLIGQFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGS 236 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + +GQE T+ + ML+ + + I+ Sbjct: 237 LLLRVG----------RESKVRNYYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIEN 281 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G TL G++F ++NPP+ W + ++ E + L S F Sbjct: 282 GDTLEDPAHKGEQFDAVVANPPYSANWSAESSFLDDERFSDY-----GKLAPKSKADFAF 336 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397 + H+ L+ G A+VL LF G A E IR++L+E + ++A++ LP +L Sbjct: 337 IQHMIYHLDDE----GTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANL 389 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + + +K + V I+A+ + GK + + D+ +I+D Y Sbjct: 390 FFGTSIPTCVLVF--KKCRQADDDVVFIDASQSFEK----GKNQNHLTDEDVDKIVDTYS 443 Query: 458 SRENGKFSRMLDYRT 472 RE + Sbjct: 444 QRETIDKYSYVATLD 458 >gi|254372254|ref|ZP_04987745.1| hypothetical protein FTCG_01320 [Francisella tularensis subsp. novicida GA99-3549] gi|151569983|gb|EDN35637.1| hypothetical protein FTCG_01320 [Francisella novicida GA99-3549] Length = 503 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 95/554 (17%), Positives = 189/554 (34%), Gaps = 61/554 (11%) Query: 1 MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + + + +WK A+ L + ++ V+L L+ + + E + + + Sbjct: 1 MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAEL--QS 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112 + E F+ ++ S L + + I +++ K Sbjct: 59 EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171 + + + L ++ I + + V+ +++E+ + F Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP+ VV L +L ++DP CG+GG + V Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T +C + IR ++S + S+ + D + Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF + R+ G P + + ++ H L Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPAGNANYAWIQHFLYHLAPT-- 323 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A VL+ L + SGE +IR+ L+E +L++ IV LP LF T I LW + Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI- 378 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K + + I+A + I K +DD +I Y + + K + Sbjct: 379 --KRGRKTKDILFIDARNKGHLINRRTK---EFSDDDITEIAQTYHNWKVDKDYEDI--- 430 Query: 472 TFGYRRIKV-LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ + ++++L LE + S + + M Q+ Sbjct: 431 -KGFCKSASYEEVAELNYVLTPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQEEALNQ 489 Query: 531 WAESFVKESIKSNE 544 + + + E Sbjct: 490 RIMDNLAKIKIAEE 503 >gi|168464569|ref|ZP_02698472.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632696|gb|EDX51150.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 539 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 115/577 (19%), Positives = 210/577 (36%), Gaps = 84/577 (14%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 + +W A L G + +++ V+L L+ + E R ++++ G +++E Sbjct: 16 EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEV 72 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124 F + FY E S + ++++ S I + K D FS Sbjct: 73 FYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + L + IE + ++ +YE+ + +F + +G +F Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP+ VV L T +L +YDP CG+ G ++ V Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +GQEL T+ + + IR L ++ + T D + Y L+N Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPF + + + RF G P + + +++H+ +KL + G A Sbjct: 289 PPFNL------KDWRNDAELTKDLRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 VL++ + SGE EIR ++ENDLI+ ++ALP LFF T I LW ++ K + Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396 Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 +G+ I+A +L T + K + D I D Y + Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMMNRTTK---ELTADDIATIADTYHA------------ 441 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 R L + LA+ E + K++ + + D + + + Sbjct: 442 -----WRSTPEE-LAARVKRGDSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGAAE 495 Query: 531 WAESFVKESIKSNEAKT---LKVKASKSFIVAFINAF 564 + V K E ++K ++ A Sbjct: 496 QEDDGVAFETKMRELSQTLFAQMKQAEELNKAIRQNL 532 >gi|19881211|gb|AAM00826.1|AF486545_4 HsdM [Campylobacter jejuni] Length = 500 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 103/546 (18%), Positives = 195/546 (35%), Gaps = 64/546 (11%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 L + +WK+A+ L + ++ ++L LR + + + ++ Sbjct: 8 KLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDAD 67 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSS 122 E A F+ + + + + I +D K + Sbjct: 68 EYL---ADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKD 124 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + + L ++ I V+ +++E+ + F + F TP+ Sbjct: 125 NL----DSKCLGELIDLIGNIAF-DTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKC 179 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV L +L ++DP CG+GG + V + Sbjct: 180 VVELLVTML-----------EPYKGRVFDPCCGSGGMFVQSEEFVKSH---QGRLDDISI 225 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T+ + + IR++ES ++ + D + + ++NPPF Sbjct: 226 YGQESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFN 280 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + GR+ G+P S+ + ++ H L GG A VL+ Sbjct: 281 DSDWSGE-------LLENDGRWKYGVPPASNANYAWIQHFLYHLSPN---GGVAGFVLAK 330 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 L + E+ IR+ L+E+DLI+ IV LP LF T I LW + +K + K Sbjct: 331 GALTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKT 388 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKV 480 I+A DL T ++ + +N D QI +IY + +NG DY G+ + + + Sbjct: 389 LFIDARDLGT---RINRRNKTLNKDDINQIANIYKAWKNG-----TDYEDIKGFCKSVSI 440 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +S++L L + + ++ ++ E + E+I Sbjct: 441 DEIRELSYVLTPGRYVGLADS--------DDEFDFDTRFNELLAKLKSQIKTEQELSETI 492 Query: 541 KSNEAK 546 N K Sbjct: 493 LKNLEK 498 >gi|241895464|ref|ZP_04782760.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Weissella paramesenteroides ATCC 33313] gi|241871438|gb|EER75189.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Weissella paramesenteroides ATCC 33313] Length = 517 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 119/550 (21%), Positives = 220/550 (40%), Gaps = 80/550 (14%) Query: 1 MTEF----TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M+E A L +W A DL G+ ++F IL R L + + Sbjct: 1 MSETHTVQATQQAELQRKLWAIANDLRGNMDASEFRNYILGLIFYRFLSDGVSAYVKELL 60 Query: 57 --------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESY 103 E Y + ++ + G F+ E+ TL + L++ Sbjct: 61 VNDDITFAEAYADDEMRDDLVDDITEAMG--FFVAPEFLFETLVADAQAGRFDVEKLQTA 118 Query: 104 IAS---------FSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDT 149 + + ++ + +F+D D +ST RL E++ L+ K+ N + +++ D Sbjct: 119 VNAVQSSTIGEESEEDFRGLFDDLDLNST--RLGNTVAERSALMQKVLLNLADLDMGHDE 176 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 V V+ + YE+LI +F + + A +F TP+ V L ++ D L + + Sbjct: 177 VQIDVLGDAYEYLIGQFAANAGKKAGEFYTPQQVSKLLAQIVTKGHDTL--------QNV 228 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDPT G+G L ++ + +GQEL T+ + +L+ + + Sbjct: 229 YDPTMGSGSLLLRIGDYA----------TVGNYYGQELNRTTYNLGRMNLLMHGVSYN-- 276 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 ++QQG TL D F G++F ++NPP+ KW D ++ R Sbjct: 277 ---QFSVQQGDTLENDYFEGQQFDAVVANPPYSAKWNTDGKLDDERF------RKYGKTA 327 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIE 388 S F+ H+ L N G A+VL LF G A E IRR+++E D +++ Sbjct: 328 PKSKADFAFVEHMLAHL----NVTGTMAVVLPHGVLFRGAA---EGTIRRYMIEQDNVLD 380 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 A++ LP +LFF T+I T + + ++ + V I+A+ + GK + + D Q Sbjct: 381 AVIGLPANLFFGTSIPTTVLVFKKNRSNQ---DVFFIDASADFEK----GKNQNNLTDTQ 433 Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 +I+D Y RE+ + ++ + + P + ++ + + Sbjct: 434 LARIVDTYDKREDVEKYAHLASRDEIIENDFNLNIPRYVDTFEEEEPIDLAATQKEIEET 493 Query: 508 SPLHQSFWLD 517 + Sbjct: 494 DAEIAKLTAE 503 >gi|237751050|ref|ZP_04581530.1| type I restriction-modification system [Helicobacter bilis ATCC 43879] gi|229373495|gb|EEO23886.1| type I restriction-modification system [Helicobacter bilis ATCC 43879] Length = 501 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 96/539 (17%), Positives = 188/539 (34%), Gaps = 69/539 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + L ++ A+ L + ++ ++L L+ + + E + + Sbjct: 1 MAKIKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 59 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKA 113 + +A F+ + S L S +L+ I + K Sbjct: 60 DAEDKD------EYIAKNIFFVPQDSRWSALLSKAKSPQIGKDLDYALDLIEKDNPQLKG 113 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + + + L + I L+ + D + +I+E+ + F + Sbjct: 114 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSDI-LGHIFEYFLGEFALSEGKK 168 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP+ VV L A+L ++DP CG+GG + V + Sbjct: 169 GGQFYTPKSVVELLVAML-----------EPYNGRVFDPCCGSGGMFVQSERFVREHQGK 217 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQE T + + +R+++S + S+ + D + Sbjct: 218 I---SDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 269 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + R+ G P ++ + ++ H + L Sbjct: 270 FIIANPPFNATDWGSEA-------LENDVRWQYGTPPSTNANYAWISHFIHHLAPK---- 318 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA VL+ L + S E +IR+ L+E++LIE IV LP LF T I LW + Sbjct: 319 GRAGFVLAKGSLTSN--TSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 376 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN------GKFSRM 467 K+ I+A L I K RI+ +I + Y + G++S + Sbjct: 377 KSHNNT---LFIDARSLGELINR---KNRILTQSDIAKITETYHKWQKAQEQQSGEYSDI 430 Query: 468 LDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 L G+ + + + ++L L D ++ + ++ Sbjct: 431 L-----GFCKSVSKEEIANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEE 484 >gi|71065437|ref|YP_264164.1| putative type I restriction-modification system, M subunit [Psychrobacter arcticus 273-4] gi|71038422|gb|AAZ18730.1| putative type I restriction-modification system, M subunit [Psychrobacter arcticus 273-4] Length = 529 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 204/549 (37%), Gaps = 70/549 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAFGGSNIDLESFV 73 +W A L G + +++ ++L L+ + E R + + Y Sbjct: 21 LWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHIDMVQAY---- 76 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126 FY +E S + + ++ S I + + K D FS Sbjct: 77 -TKDNVFYLPAESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGLT 135 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 K L + N I + + +YE+ + +F + +G +F TP+ VV+L Sbjct: 136 ASKLAALIDVVNNIDTIGNP----EEDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVNL 191 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG ++ + + K + +GQE Sbjct: 192 IAEMV-----------EPYQGKIYDPCCGSGGMFVQSIKFIESHHGNTK---DVSIYGQE 237 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T+ + + IR + S+ + T KD + + ++NPPF + Sbjct: 238 YTSTTYKLAKMNLAIRGISSNLGDVAA------DTFFKDQHEDLKADFIMANPPFNQ--- 288 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + + R+ G P + + +++H+ +KL G A VL++ + Sbjct: 289 ---KDWRASDELVDDPRWAGYPTPPTGNANYAWILHMISKLSEH----GTAGFVLANGSM 341 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-------- 417 SGE EIR+ ++ENDL++ ++ALP LF+ T I LW ++ K + Sbjct: 342 ST--TTSGEGEIRQQIIENDLVDCMIALPGQLFYTTQIPVCLWFINKDKQAKSADSKARG 399 Query: 418 ---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD--YRT 472 R G+ I+A + + I + + D I Y + K + + Sbjct: 400 LRNRSGETLFIDARAIGSMISRT---NKELTKDDIEAIAKTYHAWRGEKEAGGYEAYTDE 456 Query: 473 FGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 GY + L ++ + ++L ++ L++ + + Q+ Sbjct: 457 AGYCKSATLDDMKANDYVLTPGRYV---GAAAIEDDGISFETKMLELSQTLYAQMQASEK 513 Query: 532 AESFVKESI 540 ++ +++++ Sbjct: 514 LDATIRQNL 522 >gi|242372373|ref|ZP_04817947.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis M23864:W1] gi|242349892|gb|EES41493.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis M23864:W1] Length = 518 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 113/548 (20%), Positives = 207/548 (37%), Gaps = 74/548 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ +F IL R L +E T + + Sbjct: 9 QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSGRLLSEDNISYQE 68 Query: 66 NIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114 ++ + + + F E S L + E I S+ K + Sbjct: 69 AMNNDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFE--IEDLSNAIKNVENSTR 126 Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158 F+D D +S +RL L+ K+ N S + + ++ + Sbjct: 127 GHESEDDFIHLFDDMDLNS--SRLGNTNAARTKLIAKVMMNISTLPFVHSDLEIDMLGDA 184 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ V + ++ D + L R++YDPTCG+G Sbjct: 185 YEYLIGQFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGS 236 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L +GQE T+ + ML+ + + I+ Sbjct: 237 LLLRVGREAKVRN----------YYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIEN 281 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G TL G++F ++NPP+ W D ++ E + L S F Sbjct: 282 GDTLEDPAHKGEQFDAVVANPPYSANWSADPSFLKDERFSDY-----GKLAPKSKADFAF 336 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397 + H+ L+ G A+VL LF G A E IR++L+E + ++A++ LP +L Sbjct: 337 IQHMIYHLDDE----GTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANL 389 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + + +K ++ V I+A+ + GK + + D+ +I+ Y Sbjct: 390 FFGTSIPTCVLVF--KKCRQQDDDVVFIDASQSFEK----GKNQNHLTDEDVDKIVKTYS 443 Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 RE K+S + + P + ++ + + + + + Sbjct: 444 QRETIDKYSYVATLDEIKENDYNLNIPRYVDTFEEEEPIDLEQVQQQLKDIDKDIANVES 503 Query: 517 DILKPMMQ 524 +I + + + Sbjct: 504 EINEYLKE 511 >gi|146294000|ref|YP_001184424.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] gi|145565690|gb|ABP76625.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] Length = 523 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 93/472 (19%), Positives = 176/472 (37%), Gaps = 61/472 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65 + +W A+ L + ++ ++L L+ + R+ + +++ Sbjct: 2 LDDIKKTLWAAADKLRANVDAAEYKHLVLGLIFLKFVSDTFAARRAELERRFVDVNDDYF 61 Query: 66 ----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFS 108 E + F+ L + + N+ I + Sbjct: 62 LHDADADFIAEELEERDYYIEVNVFWVPEPARWEGLRANAKQANIGKQIDDALDAIEKEN 121 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167 + K I + + + G L ++ S I D ++ +YE+ + +F Sbjct: 122 PSLKGILDKRYARAPLPD----GKLGELVDLISTIGFGEDQSKARDILGQVYEYFLGQFA 177 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + F TP+ +V+ A+L +YDP CG+GG + + Sbjct: 178 SAEGKKGGQFYTPQSIVNTLVAVLDPHQG-----------KVYDPCCGSGGMFVQSEKFI 226 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + +GQE P T + + IR ++ + R + G T +K+ Sbjct: 227 EAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDFNLGR------EPGDTFTKNQH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + R Y L+NPPF R+ G P + + +L H+ L+ Sbjct: 278 SDLRADYILANPPFNIS-------DWWHGSLEGDPRWVYGNPPQGNANYAWLQHMLYHLK 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRA IVL++ + + + E +IRR +++ D++E +VALP LFF T I L Sbjct: 331 PT----GRAGIVLANGSMSSS--QNTEGDIRRAMVDADVVEVMVALPGQLFFNTQIPACL 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 W L+ +KT +G+V I+A L I + ++ +I + + Sbjct: 385 WFLTKQKTAR-KGEVLFIDARKLGKMISRV---QSELDQAAIDRIANTAKAW 432 >gi|68536334|ref|YP_251039.1| putative DNA restriction-modification system, DNA methylase [Corynebacterium jeikeium K411] gi|68263933|emb|CAI37421.1| putative DNA restriction-modification system, DNA methylase [Corynebacterium jeikeium K411] Length = 819 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 110/475 (23%), Positives = 193/475 (40%), Gaps = 76/475 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +WK+A++L G + + +L ++ + + Sbjct: 6 KKSDLYSSLWKSADELRGGMDASQYKDYVLTLLFVKYVSD----------------KAKS 49 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFDFSST 123 G SF L L +T+ + I ++ + + + + DF Sbjct: 50 DPYSLIEVPEGGSF-----DDLVALKGATDIGEKMNIAIRRLAEANDLQGVINNADFDDP 104 Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +L + L + F I+ D ++ + YE+L+R F +E + F Sbjct: 105 -NKLGEGKAMQDRLTNLVSIFQDIDFTGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFY 163 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V + +L P D T+YDPTCG+G L + P Sbjct: 164 TPAEVSRIMAQVLEIPKD------TPRSTTVYDPTCGSGSLLIKVAD---------SAPN 208 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294 L +GQE + T A+ M++ E + +I+QG TLS F + F Y Sbjct: 209 GLSIYGQEKDNATWALSRMNMILHGNE-------THDIRQGDTLSDPKFLRGEQLQTFDY 261 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF K K + E GRF G P +G FL+H+ L+ Sbjct: 262 FVANPPFSVKTWK-------NGFDKEYGRFEGFAEPPEKNGDYAFLLHMVKSLKSD---- 310 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR A++L LF G E++IR L+ LI+AI+ LP +LF+ T I + ++ + Sbjct: 311 GRGAVILPHGVLFRGNT---EAQIREELIRRGLIKAIIGLPANLFYGTGIPACIIVIDKK 367 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 + R G + +++A+ + +G K R + R+I+D Y++ E + + Sbjct: 368 EAANRTG-IFMVDASKGFE---KDGAKNR-LRPRDMRKIIDTYLAGEEVERYARM 417 >gi|332292955|ref|YP_004431564.1| type I restriction-modification system, M subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171041|gb|AEE20296.1| type I restriction-modification system, M subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 531 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 96/489 (19%), Positives = 187/489 (38%), Gaps = 72/489 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M E L +W A L G DF IL F + L ++ + + E Sbjct: 1 MAEDAK--QQLEQQLWNIANTLRGKMDADDFRDYILGFIFYKYLSTKMDMYANRILEPDG 58 Query: 58 ----KYLAFGGSNIDLESFVKVA--GYSFYNTSEYSLSTL--------GSTNTRNNLESY 103 + +E+ A ++ S L + +L Sbjct: 59 LTFQQVEGHEQEAAYMEAIKDAALDKLGYFLLPSELFSELARRGNAGCKNQFILGDLAKV 118 Query: 104 IASFSDNAKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVP 151 + + + DF + L +K L+ K+ + I+ Sbjct: 119 LTHIEQSTMGSESEEDFGNLFEDLDLTSSKLGKSENDKNELIVKVLSHLDEIDFDIANTE 178 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 ++ + YE+LI +F S + A +F TP+ V ++ L+ D ++++YD Sbjct: 179 SDLLGDAYEYLIGQFASGAGKKAGEFYTPQQVSNILAQLVTVGKD--------RLKSVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L V + + +GQE+ P T+ +C M++ + Sbjct: 231 PTCGSGSLLLRVAKQVKEVSA---------FYGQEMNPTTYNLCRMNMIMHDVH-----Y 276 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 +I+ TL + +RF ++NPPF KW + + L Sbjct: 277 KRFDIKNEDTLERPQHLDQRFEAIVANPPFSAKWSASPLFMSDDRFANY-----GKLAPS 331 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390 S F+ H+ ++L G A+VL LF G A E IR++L+++ + ++A+ Sbjct: 332 SKADFAFVQHMVHQLAD----NGTMAVVLPHGVLFRGGA---EGHIRKYLIKDRNYLDAV 384 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + +L +K + + I+ + + ++ + + ++ Sbjct: 385 IGLPANIFYGTSIPTCILVL--KKERVHKDNILFIDGSQHFEKVKT----QNYLREEDIT 438 Query: 451 QILDIYVSR 459 +++D Y S Sbjct: 439 KLIDTYKSY 447 >gi|86149451|ref|ZP_01067682.1| type I restriction-modification system specificity subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596435|ref|ZP_01099672.1| type I restriction-modification system specificity subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121612527|ref|YP_001001194.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|167006086|ref|ZP_02271844.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|218563146|ref|YP_002344925.1| putative type I restriction enzyme M protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|19881206|gb|AAM00822.1|AF486544_5 HsdM3 [Campylobacter jejuni] gi|19881245|gb|AAM00854.1|AF486551_5 HsdM [Campylobacter jejuni] gi|19881287|gb|AAM00889.1|AF486558_5 HsdM [Campylobacter jejuni subsp. jejuni 81-176] gi|85840233|gb|EAQ57491.1| type I restriction-modification system specificity subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|87249780|gb|EAQ72739.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88191276|gb|EAQ95248.1| type I restriction-modification system specificity subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360852|emb|CAL35653.1| putative type I restriction enzyme M protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926752|gb|ADC29104.1| putative type I restriction enzyme M protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315926723|gb|EFV06101.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929701|gb|EFV08876.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 500 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 103/546 (18%), Positives = 194/546 (35%), Gaps = 64/546 (11%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 L + +WK+A+ L + ++ ++L LR + + + ++ Sbjct: 8 KLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDAD 67 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSS 122 E A F+ + + + + I +D K + Sbjct: 68 EYL---ADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKD 124 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + + L ++ I V+ +++E+ + F + F TP+ Sbjct: 125 NL----DSKCLGELIDLIGNIAF-DTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKC 179 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV L +L ++DP CG+GG + V + Sbjct: 180 VVELLVTML-----------EPYKGRVFDPCCGSGGMFVQSEEFVKSH---QGRLDDISI 225 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T+ + + IR++ES ++ + D + + ++NPPF Sbjct: 226 YGQESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFN 280 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + GR+ G+P S+ + ++ H L GG A VL+ Sbjct: 281 DSDWSGE-------LLENDGRWKYGVPPASNANYAWIQHFLYHLSPN---GGVAGFVLAK 330 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 L + E+ IR+ L+E+DLI+ IV LP LF T I LW + +K + K Sbjct: 331 GALTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKT 388 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKV 480 I+A DL T ++ + +N D QI +IY + +NG DY G+ + + + Sbjct: 389 LFIDARDLGT---RINRRNKTLNKDDINQIANIYKAWKNG-----TDYEDIKGFCKSVSI 440 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +S++L L + + ++ ++ E + E I Sbjct: 441 DEIRELSYVLTPGRYVGLADS--------DDEFDFDTRFNELLAKLKSQIKTEQELSEII 492 Query: 541 KSNEAK 546 N K Sbjct: 493 LKNLEK 498 >gi|164688031|ref|ZP_02212059.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM 16795] gi|164602444|gb|EDQ95909.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM 16795] Length = 524 Score = 310 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 118/545 (21%), Positives = 205/545 (37%), Gaps = 79/545 (14%) Query: 1 MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE + L +W+ A DL G+ + +F IL R L + E Sbjct: 1 MTESQQQSQHQKELHARLWEMANDLRGNMEAYEFKNYILGMIFYRYLSDKTTAFVEKLLE 60 Query: 58 KYL-----AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIAS 106 + AF + ++ + L + NN L I S Sbjct: 61 EDEVDYRGAFNDEEYKEDLIEEMLESLGFVIEPDDLFSEMVKKVENNSFDIEDLHEAINS 120 Query: 107 FSDNA---------KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPD 152 +++ + +F+D D SST +L K + L+ KI IE D Sbjct: 121 LTESTLGRPSQDAFEGLFDDMDLSST--KLGKDVSTRSKLMAKIISAIDSIEFGIDETSI 178 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ + YE+LI +F + + A +F T L L + + DP Sbjct: 179 DVLGDAYEYLIGQFAANAGKKAGEFYTATGPAELLCRLTTIGLTDVL--------SAADP 230 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L + + GQEL T+ + M++ + Sbjct: 231 TCGSGSLLLRLNKYA----------NVRTFFGQELTSTTYNLARMNMILHGVPYQNFT-- 278 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 I G TL +D F +F ++NPP+ KW DK + E RF L Sbjct: 279 ---IYNGDTLEEDHFEENKFRIQVANPPYSAKWSADKRFEQDE-------RFSVYGKLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389 S FL H+ ++ GR AI+L LF G A E +IRR+++E + ++A Sbjct: 329 KSKADFAFLQHMIYHMDDD----GRIAILLPHGVLFRGAA---EEKIRRYIIEEQNYLDA 381 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP +LFF T+I + +L + + + + I+A+ + GK + + + Sbjct: 382 VIGLPANLFFGTSIPVCILVLKKDR-ADNKDNIFFIDASKEFE----SGKNQNRLRREDI 436 Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 +I+D Y+ RE+ + ++ + P ++ ++ D + L+ Sbjct: 437 NKIVDTYIKREDVEKYAHKATMDEIAENDFNLNIP---RYVDTFEEEPEVDLDKEFEALA 493 Query: 509 PLHQS 513 + Sbjct: 494 ECMRK 498 >gi|323497665|ref|ZP_08102681.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326] gi|323317248|gb|EGA70243.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326] Length = 538 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 102/464 (21%), Positives = 183/464 (39%), Gaps = 54/464 (11%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + + + ++++ F + Sbjct: 21 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQQMID---DEQEAFVEMKEFYQ 77 Query: 75 VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127 FY S +S N +++ I + + K D FS + Sbjct: 78 Q-DNIFYLEEASRWSYVKKHAKQDNIAVIIDTALSNIEKANPSLKGALPDNYFSRQDLEV 136 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 +K L +N + D + ++ +YE+ + +F + +G +F TP+ VV L Sbjct: 137 KKLASLIDTIENIDTLANECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSVVTLL 196 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 T +L +YDP CG+GG ++ V K + +GQEL Sbjct: 197 TEML-----------EPFQGKIYDPACGSGGMFVQSLKFVKQHEGRTK---DIAIYGQEL 242 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + + IR L + + T D + Y ++NPPF + Sbjct: 243 TSTTYKLAKMNLAIRGLSGNLGE------RPADTFFADQHKDLKADYIMANPPFNISQWR 296 Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 D E++ + RF G P + + +++H+ +KL G A + S Sbjct: 297 D------ENELTKDPRFSGYRTPPTGNANYGWILHMLSKLSETGTAGFVLA---NGSMSS 347 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-------RR 419 N SGE EIR+ L+END++E ++ALP LF+ T I +W ++ K R Sbjct: 348 N---TSGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNKQANAAKGYRQRE 404 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I+A ++ T K + D I D Y + + Sbjct: 405 KETLFIDAREMGTMTSRVHK---ELTVDDIALIADTYHAWRSDD 445 >gi|253569549|ref|ZP_04846959.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251841568|gb|EES69649.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 498 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 104/466 (22%), Positives = 179/466 (38%), Gaps = 54/466 (11%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 +L NF+++ L G +F I P +R+ + E+ S D Sbjct: 15 QNLYNFLFEACNILRGPVSQDNFKDYITPILYFKRISDVYDEETQTALEE------SGGD 68 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY---IASFSDN-AKAIFEDFDFSS 122 E + F S + N + I + + + F Sbjct: 69 EEYASLPEQHRFVIPDGCHWSDIRERSENLGAAIVGAMRGIELANPDTLYGVLSMFSAQK 128 Query: 123 TIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + + + ++ S L + P +M + YE L+++F + A +F TPR Sbjct: 129 WTDKKNLSDGKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGEFYTPR 188 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L +L P T+YDP CG+GG L +A+ H+ +H Sbjct: 189 SVVSLLVRIL----------DPKPGETVYDPACGSGGMLIEAVQHM-----NHSSLCCGS 233 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYCLS 297 GQE A+ + + NI QG TL +F ++ Sbjct: 234 IFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRSPKILQNGEIAKFDCVIA 286 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF + E + + GR G P S G ++ H+ + +G GR A Sbjct: 287 NPPFSL-----EKWGSVEWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASGNGRMA 338 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V+ LF G E IR L+++DLIEA+V L LF+ T ++ IL K Sbjct: 339 VVMPQGVLFRGNE---EGRIREKLVKSDLIEAVVTLGDKLFYGTGLSPCFLILRRLKPAA 395 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 +V +I+ T + T R + I++ + ++ ++Y++ E+ + Sbjct: 396 HSARVLMIDGTKILTVKRA----QNILSPENVDRLYELYINYEDVE 437 >gi|57865903|ref|YP_190015.1| type I restriction-modification system, M subunit [Staphylococcus epidermidis RP62A] gi|57636561|gb|AAW53349.1| type I restriction-modification system, M subunit [Staphylococcus epidermidis RP62A] Length = 518 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 109/533 (20%), Positives = 204/533 (38%), Gaps = 69/533 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + + ++ Sbjct: 9 QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68 Query: 66 NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114 + E++ + F + S L E I ++ + Sbjct: 69 AWEDEAYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + DF A ++ + L+ K+ N + + + ++ + YE+L Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + ++ ++ +YDPTCG+G L Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + +GQE T + ML+ + I TL Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F G++F ++NPP+ KW D ++ E +G L S F+ H+ Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 + L + G A+VL LF G A E IR++L+E + ++A++ LP +LFF T Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNHLDAVIGLPANLFFGT 393 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + + +K E V I+A+ + GK + ++ D+ +I++ Y +RE Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNLLTDEDVDKIVETYRNRET 447 Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 KFS ++ + P ++ ++ D ++LS + + Sbjct: 448 IDKFSYVVSLDEIIENDYNLNIP---RYVDTFEEEEPIDLDQVQQQLSDIDKE 497 >gi|225619379|ref|YP_002720605.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1] gi|225214198|gb|ACN82932.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1] Length = 500 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 106/523 (20%), Positives = 203/523 (38%), Gaps = 60/523 (11%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + + +W ++ L G+ +++ VIL L+ + E + + ++ G Sbjct: 4 SENDKDIKKELWAASDKLRGNIDASEYKHVILGLVFLKYISDKFEIRYNELVKE-----G 58 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFED 117 ++ ++ FY E + S + + + I + K I Sbjct: 59 FDMQDDAEAYREKNIFYLPEESRFDYISSHARSDEIGAIIDEAMLKIEENNKKLKGILPK 118 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + + L +I FS I++ D + N+YE+ + +F + + +F Sbjct: 119 NYSRPELDK----RRLGEIIDLFSNIKIANKNKKDI-LGNVYEYFLSQFATAEGKRGGEF 173 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V L +L +YDP CG+GG + + Sbjct: 174 YTPSPIVKLLVEIL-----------EPYKGRIYDPCCGSGGMFVQSAKFLEAHSESVN-- 220 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 + +GQE P T +C + I ++ + ++ + T +DL + Y L+ Sbjct: 221 -NISVYGQESNPTTWKLCNMNVAIHGIDGNLGKNNA------DTFFEDLHKNLKADYILA 273 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF + R+ G+P + + +L H+A+KL G+A Sbjct: 274 NPPFNMSDWGADA-------LKDDYRWKWGIPPNGNANYGWLSHIASKLSES----GKAG 322 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL++ L SGE IR+ ++++DLIE I++LPT LF T I LW L+ K + Sbjct: 323 VVLANGSLST--QTSGEGLIRQNMIKDDLIECIISLPTQLFISTQIPVSLWFLNKDK--K 378 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 ++G + I+A + +R+++DD I S + GK + + GY + Sbjct: 379 QKGHILFIDARNYGRMESRV---QRVLDDDDIEAIAKTVHSWQKGKGYKDI----KGYCK 431 Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + + +IL LE + + + L Sbjct: 432 SASLEEISKEDYILTTGRYVGLEEEDNKEEDFDAKMKVLTEEL 474 >gi|116669552|ref|YP_830485.1| N-6 DNA methylase [Arthrobacter sp. FB24] gi|116609661|gb|ABK02385.1| N-6 DNA methylase [Arthrobacter sp. FB24] Length = 527 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 110/567 (19%), Positives = 194/567 (34%), Gaps = 86/567 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EK 58 +L +W A+ L G+ + +++ V+L L+ + E R A+ E+ Sbjct: 8 KVKTLEQRLWDTADALRGNQEPSEYKHVVLGLVFLKYISDRFEERRRAIETSLSDPNSEE 67 Query: 59 Y--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSD 109 Y S + + F+ L L+ I + Sbjct: 68 YIPNEARRSEFLEDRDEYASHNVFWVPELARWGYLQDNAKLPKIGQQLDQAMDLIEKENP 127 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167 + + + + L ++ I D D V+ +YE+ + +F Sbjct: 128 IIRGVLPRNYGREGLDK----SRLGQLVDLIGSIGFTESDDHGSDDVLGRVYEYFLGQFA 183 Query: 168 -SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E + A F TPR VV +L +YDP CG+GG + Sbjct: 184 GKETGKDAGAFYTPRSVVKTLVEML-----------EPFHGRVYDPACGSGGMFVQSAEF 232 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V G + +GQE T + + +R +E+D + + ++DL Sbjct: 233 VTAHGGE---RTDISVYGQEFTDTTWKLAKMNLALRGIEADLGD------RSADSFTQDL 283 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 R + ++NPPF K + R+ G P + + ++ H + L Sbjct: 284 HRDLRADFIIANPPFNVSNW-------WNAKLADDPRWKYGTPPEGNANFAWVQHFLHHL 336 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G A VLS+ SGE EIRR L+E DL++ IVA+P LFF T I Sbjct: 337 SPK----GTAGFVLSNGS--LSSKSSGEGEIRRKLVEADLVDCIVAMPDKLFFNTGIPVS 390 Query: 407 LWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 LW +S + R+G+V I+A+ L + R + +D +I Y + Sbjct: 391 LWFISKERHGNGHRARQGEVLFIDASKLGRMENR--RLRVLDDDRDIAKIAGAYHA---- 444 Query: 463 KFSRMLDYRTFGYRRI-------KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 GY + + + F+L K + Sbjct: 445 -----WRNHDGGYEDVPGFVVAATLEEIRQHDFVLTPGRY-------VGTKEAEADWEPV 492 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKS 542 D + + ++Y ++E ++ Sbjct: 493 EDKIARLTGELYAEFERGRKLEEVVRE 519 >gi|223940844|ref|ZP_03632674.1| type I restriction-modification system, M subunit [bacterium Ellin514] gi|223890494|gb|EEF57025.1| type I restriction-modification system, M subunit [bacterium Ellin514] Length = 496 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 103/546 (18%), Positives = 187/546 (34%), Gaps = 75/546 (13%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + W + G + IL L+ L +++ Sbjct: 6 QDQINQVAWNACDTFRGTIDPAQYKDYILVTLFLKYLSDVWLD-----KKEEYEKEFKGD 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFD 119 + ++A F TL + N+ I + + +F + D Sbjct: 61 AERAKRRLARERFILPDGCDFYTLYGKRSEANIGELINVALEQIEDANKTKLEGVFRNID 120 Query: 120 FS---STIARLEKAGLLYKICKNFS--GIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEG 173 F+ + E+ L + + F+ ++L P V ++ N Y++LI F S+ + Sbjct: 121 FNSEANLGQTKERNKRLKSLLEKFAVEELDLRPSRVGKQDIIGNTYQYLIGHFASDAGKK 180 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP +V L LL +P + DPTCG+G L + V D Sbjct: 181 GGEFYTPGEVSELLAKLL----------APKKGSRICDPTCGSGSLLIQVGDEVGDN--- 227 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289 +GQE+ T A+C ML+ + + I+ G T++ + Sbjct: 228 -----DFSLYGQEMNGSTWALCRMNMLVHNKD-------AARIEWGDTINNPKLIERDSL 275 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F ++NPPF D + RF G+P S G F+ H+ E Sbjct: 276 MKFDIVVANPPFSL-----ADWGADSADADKFHRFHRGVPPKSKGDYAFISHMV---ETA 327 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G G+ ++ LF G A E IR+ +E +++EA++ LP LFF T I + I Sbjct: 328 IEGTGKVGVIAPHGVLFRGGA---EERIRKAFIEENVLEAVIGLPEKLFFGTGIPAVILI 384 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + K + V I+A+ + N + ++ D +I+ Y + + Sbjct: 385 FNKGKNTK---DVLFIDASREFVEDTN----QNKLSQDHITKIVATYAAFK--------- 428 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 R + F L+ L + ++ + Sbjct: 429 TVDKYAYRATPEQIDENDFNLNIPRYVDTFEPEKPVNLKAVQNDIDDLEIELARVRKQMA 488 Query: 530 GWAESF 535 G+ + Sbjct: 489 GYLKEL 494 >gi|209527338|ref|ZP_03275846.1| N-6 DNA methylase [Arthrospira maxima CS-328] gi|209492196|gb|EDZ92543.1| N-6 DNA methylase [Arthrospira maxima CS-328] Length = 497 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 95/493 (19%), Positives = 181/493 (36%), Gaps = 62/493 (12%) Query: 22 LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81 + G ++ V L L+ + A + + + + V F+ Sbjct: 1 MRGHMDAAEYKHVTLGLIFLKYISDAFQERYDDLAARQE--TDYTDPEDRDEYVGENMFW 58 Query: 82 NTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134 E ST+ ++ + ++ I + K + + + L Sbjct: 59 VPQEARWSTIQASAKQPDIGKRIDEAMLAIEKENPRLKGVLPSNYNRPDLDK----QRLG 114 Query: 135 KICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 ++ S I L + ++ +YE+ + +F + +G +F TP+ VV L ++ Sbjct: 115 ELIDLISTIGLGDAENRSKDILGRVYEYFLGQFAEKEGKGGGEFYTPQSVVRLLVEMI-- 172 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 P R +YDP CG+GG + V G + +GQE P T Sbjct: 173 --------QPYKGR-IYDPCCGSGGMFVQSEKFVEAHGGRKG---DIAIYGQESNPTTRR 220 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 +C+ + IR ++ + +Q + + DL + Y L+NPPF Sbjct: 221 LCLMNLAIRGIDGNIGD------RQADSFTNDLHKDLKADYILANPPFNIS-------DW 267 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 K E R+ G P + + ++ H+ + L G A + S N SG Sbjct: 268 WNEKLAEDVRWQYGTPPKGNANYAWIQHIIHHLAPNGIAGFVLA---NGSMSSN---QSG 321 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----------EERRGKVQ 423 E +IR+ L+ +DL++ ++ALP LF+ T I LW ++ K+ R+G+ Sbjct: 322 EGDIRKALIASDLVDCMIALPGQLFYTTQIPACLWFVARDKSGKPTAGHKPCRNRKGQTL 381 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLR 482 I+A L I R + D++ +I Y + + + G+ + + Sbjct: 382 FIDARKLGVLIDRT---HRELIDEELARIAGTYQAWRGESGADEYEDLP-GFCKSATLEE 437 Query: 483 PLRMSFILDKTGL 495 ++L Sbjct: 438 IASHGYVLTPGRY 450 >gi|49658897|emb|CAF28523.1| putative HsdM-like N-methyl transferase [Yersinia pseudotuberculosis] Length = 568 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 108/592 (18%), Positives = 192/592 (32%), Gaps = 110/592 (18%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56 M L N WK A+ L + ++ V+L L+ + A E + + Sbjct: 1 MNNTEQLFLNELDNKFWKAADKLRSNMDAANYKHVVLGLIFLKYVSDAFEARQQELITLF 60 Query: 57 --------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95 E+Y +++E + F+ TL + Sbjct: 61 RDVGNPDNIYAISRDDYATDEEYAQAIQEELEVEDYY-TEKNVFWVPKAARWETLKNKAT 119 Query: 96 -----------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132 +N I + K I + Sbjct: 120 LPVGTVLWVDELGQEVKLRSVSWLIDNALDKIEDANPKLKGILNRIGQYQLG-----NEV 174 Query: 133 LYKICKNFSGIELHPDTV--------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 L + FS + ++ ++YE+ + +F + + TP+ +V Sbjct: 175 LIGLINTFSDANFNNPEYNGEKLQLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIV 234 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPI 239 L +L P R +YDP G+GGF + + + + Sbjct: 235 TLIVEML----------QPYKGR-VYDPAMGSGGFFVSSDRFIEEHAGEKHYNVAEQKRN 283 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + +GQE P T + M IR ++ + + + TL D R + ++NP Sbjct: 284 ISVYGQESNPTTWKLAAMNMAIRGIDFNFGK------KNADTLLDDQHPDLRADFVMANP 337 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF K K R+ G P + + ++ H+ + L G A ++ Sbjct: 338 PFNMKEW-------WSAKLEGDVRWQYGTPPQGNANFAWMQHMIHHLAPK---GSMALLL 387 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415 + S N E EIRR L+E DL+E +VALP LF T I +W+L+ KT Sbjct: 388 ANGSMSSNTNN---EGEIRRNLIEADLVECMVALPGQLFTNTQIPACIWLLTKDKTGGNG 444 Query: 416 -EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 R+G+V I+A + + R R D +I D + + + K D F Sbjct: 445 KAHRKGEVLFIDARQIGFMRDRVL----RDFTKDDIAKIADTFHAWQEDK--DYQDEAGF 498 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + + + F+L + + LK +++ Sbjct: 499 CFAA-TLEDIKKNDFVLTPGRYVGAAEQDEDSEPFAEKMTRLTQQLKVQLEE 549 >gi|149185165|ref|ZP_01863482.1| type I restriction-modification system, M subunit [Erythrobacter sp. SD-21] gi|148831276|gb|EDL49710.1| type I restriction-modification system, M subunit [Erythrobacter sp. SD-21] Length = 517 Score = 309 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 104/544 (19%), Positives = 193/544 (35%), Gaps = 78/544 (14%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKV 75 W + G + + IL F + L R A ++Y + ++ Sbjct: 14 WDACDTFRGTIDPSAYKDYILVFLFWKFLSDLWADERKAAEDQY-----AGDSERVARRL 68 Query: 76 AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--------KAIFEDFDFS---STI 124 + + F S L +N+ + + + + + D++ + Sbjct: 69 SRFRFQIPEGSSFHDLYPNRNADNIGEQVNVALEAIEQANIAKLEGVLSETDYNSRTNLG 128 Query: 125 ARLEKAGLLYKICKNFSGIE-------LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 ++ + + NF+ + + V+ Y +LI RF S+ + A +F Sbjct: 129 ETADRNRRIKDLFDNFARPALDFSPSRFGGEDNAEDVIGETYIYLISRFASDAGKKAGEF 188 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKI 236 TPR V L L P + DP CG+ L A +VA G H Sbjct: 189 FTPRKVSELLVRL----------ADPQPGNKILDPACGSSTLLVRAAEYVAGIEGKEHAS 238 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 GQE +T A+ M + L+ + I+ G TL+ F RF Sbjct: 239 QANAQVFGQEATNQTQALARMNMFLHGLD-------NARIEWGDTLTNPKFVNGDALMRF 291 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 ++NPPF K + A + R+ G+P S G F+ H+ + Sbjct: 292 DRIIANPPFSLKKWGHEVAGDDRF-----NRYHRGVPPKSRGDYAFISHMVESAKPRE-- 344 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GR A++ LF A E +IR+ L+E +L++ +V LP LF T I + I Sbjct: 345 -GRVAVIAPHGVLFRSGA---EGKIRQALIEENLLDGVVGLPAQLFPSTGIPVCMVIFDR 400 Query: 413 RKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 + + E V I+A+ + GKK+ ++ D +I+D + +RE+ + + Sbjct: 401 AREKGGAREDADDVLFIDASREFVP----GKKQNELSKDHLNKIVDTWRAREDVERYASV 456 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 I + + L+ T+ + + ++ + +++ Sbjct: 457 ---------ITREQIAENGYNLNIPRYV-----DTFEPEEEIDIAAVQAEIEELEKELAE 502 Query: 529 YGWA 532 Sbjct: 503 TRQK 506 >gi|192362278|ref|YP_001984093.1| type I restriction-modification system specificity subunit [Cellvibrio japonicus Ueda107] gi|190688443|gb|ACE86121.1| type I restriction-modification system specificity subunit [Cellvibrio japonicus Ueda107] Length = 521 Score = 309 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 98/544 (18%), Positives = 194/544 (35%), Gaps = 61/544 (11%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 TE L +WK A+ L + ++ V+L L+ + + E +++ Sbjct: 6 TEKPTKTEPLEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELHIKLKKGKGD 65 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114 + G++ + + K F+ + S L + ++ I + + K + Sbjct: 66 YVGADPEDKDEYKAE-NIFFVPRKARWSFLLGKAKQPDIGLHVDAAMDAIEKENPSLKGV 124 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEG 173 + L + S I L V+ +++E+ + F + Sbjct: 125 LPKVYARQNL----DPTSLGGLIDLVSNIALGDAKARSADVLGHVFEYFLGEFALAEGKQ 180 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TPR +V L A+L ++DP CG+GG + V + Sbjct: 181 GGQFYTPRSIVELLVAML-----------EPYKGRVFDPCCGSGGMFVQSEKFVEEHQGR 229 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQE T + + IR +++ + ++ + D + Sbjct: 230 VN---DISIYGQESNQTTWRLAKMNLAIRGIDASQVKWNNEG-----SFLNDAHKDVKAD 281 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNG 352 Y ++NPPF + GR+ G P + + +L H L Sbjct: 282 YIIANPPFNVSDWSGE-------LLRTDGRWKYGPPPPLGNANFAWLQHFIYHLAPK--- 331 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A +VL+ L + SGE EIR+ L+ E +LI+ IV LP LF T I LW ++ Sbjct: 332 -GKAGVVLAKGALTS--KTSGEGEIRKALIAEGNLIDCIVNLPAKLFLNTQIPAALWFMN 388 Query: 412 NRKTEE-------RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + R+ ++ I+A +L I + R ++ D +I +Y + G+ Sbjct: 389 RARGSSSKSSGHPRKSEILFIDARNLGHLINR---RTRELSHDDINKIAGVYHNWRTGEG 445 Query: 465 SRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 G+ + + R + ++L L + + + + + Sbjct: 446 EYE---DVKGFCASVSLERVAELDYVLTPGRYVGLPEEEDDFNFAERFAALKAEFEAQLK 502 Query: 524 QQIY 527 ++ Sbjct: 503 EEAK 506 >gi|319400012|gb|EFV88254.1| type I restriction-modification system, M subunit [Staphylococcus epidermidis FRI909] Length = 518 Score = 309 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 107/544 (19%), Positives = 202/544 (37%), Gaps = 66/544 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + + ++ Sbjct: 9 QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68 Query: 66 NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114 E + + F + S L E I ++ + Sbjct: 69 AWKDEEYREALQQELINLIGFVIEPQDLFSHLIQKIESQTFEIEDLHKAINKIEESTRGE 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + DF A ++ + L+ K+ N + + + ++ + YE+L Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + ++ ++ +YDPTCG+G L Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + +GQE T + ML+ + I TL Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F G +F ++NPP+ KW D ++ E +G L S F+ H+ Sbjct: 286 ENPAFRGGKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 + L + G A+VL LF G A E IR++L+E + ++A++ LP +LF+ T Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFYGT 393 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + + +K E V I+A+ + GK + ++ D+ +I++ Y +RE Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNLLTDEDVDKIVETYRNRET 447 Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 KFS + + P + ++ + + + + L+I + Sbjct: 448 IDKFSYVATLDEIKDNDYNLNIPRYVDTFEEEEPIDLDQVQQQLSDIDKEIANVELEINE 507 Query: 521 PMMQ 524 + + Sbjct: 508 YLKE 511 >gi|121583502|ref|YP_973928.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2] gi|120596752|gb|ABM40186.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2] Length = 517 Score = 309 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 102/539 (18%), Positives = 193/539 (35%), Gaps = 63/539 (11%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------EKYL 60 + +W A+ L + ++ ++L ++ + R+ + + Y Sbjct: 2 LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTARLTNPADAYY 61 Query: 61 AFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLES-------YIASFS 108 + D+E+ ++ Y +F+ +L + + ++ I + + Sbjct: 62 YGDAAPEDIEAELEDRDYYKEVNAFWVPEAARWESLRAAAKQVDIGKRIDDALSLIEAEN 121 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167 K I + + + G L ++ S I + V+ +YE+ + F Sbjct: 122 PTLKGILDKRYARAQLPD----GKLGELVDLISTIGFGDNPSTARDVLGQVYEYFLGMFA 177 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + F TP +V A+L +YDP CG+GG + + Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAILGPH-----------SGKVYDPCCGSGGMFVQSEKFI 226 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + +GQE P T + + IR ++ + + + G T +++ Sbjct: 227 EAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGK------EPGDTFTRNQH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 R + L+NPPF R+ G P + + +L H+ + L+ Sbjct: 278 PDLRADFILANPPFNIS-------DWWHGSLMGDARWVHGDPPPGNANYAWLQHMLHHLK 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRA IVL++ + + + E +IR ++E D++E +VALP LFF T I L Sbjct: 331 PT----GRAGIVLANGSMSSS--QNSEGQIRAAMVEADVVEVMVALPGQLFFNTQIPACL 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466 W L +KT +G+V I+A L T I + D +I + Sbjct: 385 WFLVKQKTHR-KGEVLFIDARKLATMISRV---QSEFTDAVIERIAATVAAWRGEADAGE 440 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 D F R +K+ + +L EA + + L M + Sbjct: 441 YRDTLGFC-RSVKLAEIAQHGHVLTPGRYVGAEAVEDNDEDFATKMQQLTEKLGEQMAR 498 >gi|215486218|ref|YP_002328649.1| predicted type I restriction-modification enzyme, M subunit [Escherichia coli O127:H6 str. E2348/69] gi|215264290|emb|CAS08643.1| predicted type I restriction-modification enzyme, M subunit [Escherichia coli O127:H6 str. E2348/69] Length = 812 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 104/483 (21%), Positives = 191/483 (39%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120 V G SF + L + + + I ++ K + ++ DF Sbjct: 45 YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + V D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMIDRLSKLVGIFEGLDLSSNRVEGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPRDATVYDPTCGSGSLL---------LKVNDE 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 L GQE++ T A+ M++ + + I QG+TLS + K Sbjct: 204 ARRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + K RFG G+P +G FL+H+ L+ Sbjct: 257 AFDFAVANPPFSNKNWTNGLTP----KKDPFERFGWGIPPEKNGDYAFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR L++ I+ ++ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469 R+G + +I+A+ + +G K R + +I+D++ R +SRM+ Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSQDIHRIVDVFNHQRTVPGYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 SSE 423 >gi|212703156|ref|ZP_03311284.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098] gi|212673422|gb|EEB33905.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098] Length = 517 Score = 309 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 97/529 (18%), Positives = 188/529 (35%), Gaps = 57/529 (10%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +W A+ L + ++ V+L L+ + A E + + + G++ + Sbjct: 13 LEKQLWSAADKLRKNIDAAEYKHVVLGLIFLKYISDAFEALHATLTAGEGEYEGAD-PED 71 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123 +A F+ S L + ++ I + + Sbjct: 72 RDEYLAQNIFFVPVSARWSHLRDHAKQPDIGVLLDKAMEAIEQENSELAGVLPKVYAR-- 129 Query: 124 IARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 L+ A L + S I V+ +++E+ + F + F TPR Sbjct: 130 -PNLDPAN-LGGLIDLVSNIAFGDTPEQSADVLGHVFEYFLGEFALAEGKKGGQFYTPRS 187 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V L A+L + DP CG+GG + V + + L Sbjct: 188 IVELLVAML-----------EPFRGRVMDPCCGSGGMFVQSEQFVREH---QGMLEDLSL 233 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T + + IR ++S ++ + D R Y L+NPPF Sbjct: 234 YGQESNQTTWRLAKMNLAIRAIDSSQVLWNNEG-----SFLHDAHPDVRVEYILANPPFN 288 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 R+ G+P + + ++ H + L G+A +VL+ Sbjct: 289 DSDWSGD-------LLQNDARWQYGVPPAGNANFAWMQHFIHHLSPR----GQAGVVLAK 337 Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT----EE 417 L + +GE +IRR ++E +L++ IV LP LF T I LW L+ + + Sbjct: 338 GSLTS--KTNGEGDIRRRMIEEGNLVDCIVNLPAKLFLNTQIPACLWFLARDRKNGPFRD 395 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR- 476 R G++ I+A ++ I + RI+ + I + Y + N + G+ Sbjct: 396 RSGEILFIDARNMGQLINR---RTRILTAEDIATISNAYHNWRNPDGAYE---DVKGFCA 449 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + + R + ++L L + + S ++ + ++ Sbjct: 450 AVPLSRVAELDYVLTPGRYVGLPDEEDDFDFAERFASLKQELAAQLEEE 498 >gi|258513099|ref|YP_003189355.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01] gi|256635002|dbj|BAI00976.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01] gi|256638057|dbj|BAI04024.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-03] gi|256641111|dbj|BAI07071.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-07] gi|256644166|dbj|BAI10119.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-22] gi|256647221|dbj|BAI13167.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-26] gi|256650274|dbj|BAI16213.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-32] gi|256653265|dbj|BAI19197.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656318|dbj|BAI22243.1| type I DNA methyltransferase M subunit HsdM [Acetobacter pasteurianus IFO 3283-12] Length = 537 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 108/545 (19%), Positives = 194/545 (35%), Gaps = 67/545 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77 A+ L + + +D+ V L LR + A E + + + +A Sbjct: 41 AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM-----LEDPEAAEDPDEYLAE 95 Query: 78 YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129 F+ S L N+ I + K + + + Sbjct: 96 NIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALDTV-- 153 Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +L ++ S I + D V+ +YE+ + F + +F TP VV Sbjct: 154 --MLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 211 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++L +YDP CG+GG + V G + +GQE Sbjct: 212 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 257 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + +R + +D I+ + + +D RF Y L+NPPF Sbjct: 258 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 307 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 E R+ G P + + +L H+ L G A +VL++ + Sbjct: 308 -----DWWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSMS 358 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 + + E EIRR ++E D+++ +VALP LF+ T I LW L+ K +RRG++ Sbjct: 359 SN--QNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKNPKGWRDRRGEI 416 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481 I+A L + RR + D+ +I D Y + K + + G+ + + Sbjct: 417 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKNAGKYEDIP-GFCKSATLD 472 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + F+L E + S + + K + +Q + + S+K Sbjct: 473 EVEQHGFVLTPGRYVGAEEA---EEDSVPFTERFAALEKTLKEQFAQGETLNAKITASLK 529 Query: 542 SNEAK 546 K Sbjct: 530 LIVQK 534 >gi|161507538|ref|YP_001577492.1| Type I restriction-modification system modification subunit [Lactobacillus helveticus DPC 4571] gi|160348527|gb|ABX27201.1| Type I restriction-modification system modification subunit [Lactobacillus helveticus DPC 4571] Length = 551 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 119/584 (20%), Positives = 220/584 (37%), Gaps = 82/584 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPTRS 53 E + L + ++ A+ L ++ +L + L LE R Sbjct: 3 EEKVLTKKELESALFSAADALRSKMDANEYKNYLLGIIFYKYLSDKMLYHVGEVLEGRRD 62 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSF-YNTSE-YSLSTLGST----------------- 94 E+ D E +F Y S ++ + + + Sbjct: 63 LSLEENQKIYEEKFDTEDLQDDIKTTFSYTISPEHTFTYILNEINGTARTKDGKIKTFQI 122 Query: 95 -NTRNNLESYIASFSDNAKAIFEDFDFSS---TIARLEKAGLLYKICKNFSGIELHPDTV 150 + + ++ + + +F D S ++A + + K +EL Sbjct: 123 SDLADAFNDIESTKDSDFEGLFADVQLYSPRLGTNAQKQADTIANVIKAIGDLELVNQVD 182 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + YE+LI++F SE + A +F TP++V L T L L + T+Y Sbjct: 183 NKDTLGDAYEYLIKQFASESGKKAGEFYTPQEVSELLTKLTLVDK------NYPEEMTVY 236 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+G L ++ + +GQE+ T+ + M++ ++S + Sbjct: 237 DPAMGSGSLLLKFKKYIKLANGQADK---IFYYGQEINMSTYNLARMNMILHGVDSSNQE 293 Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +++G TL +D + F + NPP+ KW +K ++ RF P Sbjct: 294 -----LRRGDTLDEDWPPVSKTMFDAVVMNPPYSLKWSANKGFLQ-------DPRFSPYG 341 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S FL+H L+ G AIVL LF G A E +IR+ LLEN Sbjct: 342 VLPPKSKADYAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRKKLLENGS 394 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+A++ LP++LF+ T+I T + +L KT+ V I+A+ + +N + + + Sbjct: 395 IDAVIGLPSNLFYSTSIPTVIVVLKKDKTDRS---VMFIDASKGFEKKKN----QNELRE 447 Query: 447 DQRRQILDIYVSRENGKFS------RMLDYRTF------GYRRIKVLRPLRMSFILDKTG 494 + ++ILD Y RE+ + ++ F P+ + + Sbjct: 448 EDIQKILDTYEKREDVERYAHLAKFDEIEENDFNLNIPRYVDTFVPEPPVDLKKVATDLH 507 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 +E + R+L + + D + M E+ + E Sbjct: 508 ETNVEIEKNQRELVGMLKELTSDDTEIMDGLDAIIKELEAELHE 551 >gi|85859881|ref|YP_462083.1| type I restriction-modification system methylation subunit [Syntrophus aciditrophicus SB] gi|85722972|gb|ABC77915.1| type I restriction-modification system methylation subunit [Syntrophus aciditrophicus SB] Length = 515 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 90/471 (19%), Positives = 173/471 (36%), Gaps = 52/471 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + ++K A+ L + ++ ++L L+ + + E ++E Sbjct: 1 MANNNNKTEAFEKTLFKAADKLRKNMDAAEYKHIVLGLIFLKYISDSFEALYEKIKEGKG 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113 F G++ + + F+ S L S +++ I + K Sbjct: 61 DFEGADPEDPDEYRAE-NVFFVPQAARWSYLHSRAKLPSIGKDVDDAMEAIEKENQTLKG 119 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSE 172 I + + L + I L + ++ +YE+ + F + + Sbjct: 120 ILPQVYARPNLDKAA----LGGLIDLVGNIALGTEAAKAKDLLGRVYEYFLGEFANAEGK 175 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TP+ +V L ++ +YDP CG+GG + V + Sbjct: 176 KGGQFYTPKSIVRLMVEMI-----------EPFKGRVYDPCCGSGGMFIMSERFVENH-- 222 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + GQE T+ +C + IR ++ + ++ + D+ + Sbjct: 223 -QGKVDDISIFGQESNQTTYRLCRMNLAIRGIDGSQVKWNTEG-----SFLNDVHKDLKS 276 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + R+ G+P+ ++ + +L H+ L Sbjct: 277 DFILANPPFNDSDWSGQ-------LLQSDPRWKYGVPQAANANFAWLQHMIYHLSPK--- 326 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G A VL++ L + E EIR+ L+ENDL++ IVALP LF+ T I LW LS Sbjct: 327 -GIMACVLANGSL--SSQTNNEGEIRKSLVENDLVDCIVALPKQLFYNTGIPACLWFLSR 383 Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 ++ +R ++ I+A++ R +DD +I Y Sbjct: 384 KRAGNGDRKRSSEILFIDASEEGFMEDRT---HRAFSDDDIAKIAGTYHEW 431 >gi|328952628|ref|YP_004369962.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] gi|328452952|gb|AEB08781.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] Length = 522 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 113/548 (20%), Positives = 208/548 (37%), Gaps = 63/548 (11%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +++W+ A + G F ILPF L+RL + V FG I Sbjct: 10 LESWLWEAACQIRGPLDAPKFKDYILPFIFLKRLSDVFD---DEVEHLAHDFGDRKIAAT 66 Query: 71 SFVKVAGY-SFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDNAKAIFEDFDFSSTI 124 + FY + +T L + + + + + DF++T Sbjct: 67 LVDQDHKLVRFYMPKAARWPHIATITTGLGQALTDAVRAVARENPKLSGVIDITDFNATA 126 Query: 125 --ARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 R+ L + + + + V ++ YE+L+R+F + A +F TP Sbjct: 127 AGQRIVDDSRLAALVQVLNNPNYRLGLEDVEPDILGRAYEYLLRKFAEGQGQSAGEFYTP 186 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V + +L P T+ DP CG+GG L + + + Sbjct: 187 LEVGIVMARIL----------EPQPGMTVCDPCCGSGGLLIKCHLRLLETKGEKHNGRLK 236 Query: 241 --------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 +GQE+ T A+ I +E+D I G T+ + FT Sbjct: 237 LPPAIAPLQLYGQEINSVTFAMARMNAFIHDMEAD--------IALGDTMHRPAFTEGDG 288 Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + F +NP + +K+ ++N RFG G+P S ++ H+ L Sbjct: 289 RLRHFALVTANPMWNQKFGA------ATYENDTYERFGRGVPPSSSADWGWVQHMTAILS 342 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 GR A+VL + + G +G E +IR+ +E D IEA++ LP +LF+ T Sbjct: 343 DS----GRMAVVLDTGAVSRGSGNTGSNKERDIRKKFVEEDRIEAVLLLPENLFYNTTAP 398 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + +L+ RK G++ LINA+ L+ G+ + + + QI +Y + + Sbjct: 399 GIVMVLNCRK--RHPGEILLINASKLFAK----GRPKNYLEEAHLEQIAQVYQDWQAKES 452 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + R L P R ++ + L+ + + ++ L +++ Sbjct: 453 LATVITKAEAARNDYNLSPSRYVSTGVESEVLPLDEAVVLLAEAEEERAEADRQLDEILK 512 Query: 525 QIYPYGWA 532 ++ GW Sbjct: 513 KLGFIGWR 520 >gi|270157704|ref|ZP_06186361.1| putative type I restriction-modification system M subunit [Legionella longbeachae D-4968] gi|269989729|gb|EEZ95983.1| putative type I restriction-modification system M subunit [Legionella longbeachae D-4968] Length = 531 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 106/575 (18%), Positives = 205/575 (35%), Gaps = 84/575 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE SL +W A L + V+L L+ + + E R ++ + Sbjct: 1 MTENQF-LKSLEVKLWAAANKLLPSLDAAVYKHVVLGMIFLKYVSDSFETRREELKSAFA 59 Query: 61 A-----FGGSNIDLESFVKV--------AGYSFYNTSEYSLSTLGSTNTR---------- 97 + G +I+ + + F+ + L N R Sbjct: 60 NPKNDYYLGEDIEEDILKEELENRDYYTEKNVFWVPRAARWNYL-QDNIRLSLGAPLPLG 118 Query: 98 ----------NNLESYIASFSDNAKAIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELH 146 ++ + I + + K I + DFS I L + + I H Sbjct: 119 GEFKGAGKLIDDAMALIEAENPKLKKILKK-DFSQLQIEH----DKLANLLDLIATIPFH 173 Query: 147 PDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 D + ++ ++YE+ + +F + + F TP+ +V+L ++ Sbjct: 174 YDGMKSKDILGHVYEYFLGQFAAAEGKKGGQFYTPKSIVNLIVEMV-----------EPF 222 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP G+GGF + + + + +GQE P T + M IR ++ Sbjct: 223 KGRVYDPAMGSGGFFISSEKFIEEH---QGRLGDISVYGQESNPTTWRLAAMNMAIRGID 279 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + ++ + T +KD R + L+NPPF K + R+ Sbjct: 280 FNFGKEPA------DTFTKDQHPDLRADFVLANPPFNMKEW-------WDGSLDGDSRWK 326 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G P ++ + ++ H+ + G +VL++ L + SGE E+R +++ D Sbjct: 327 YGQPAENNANFAWMQHMLHHTSP----NGVVGLVLANGSLSSN--TSGEKEVRESIIKAD 380 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 L+EAIVALP+ LF T I +WIL+ K ++ K I+A I K+R Sbjct: 381 LVEAIVALPSQLFSNTTIPACIWILNKNKAQKE--KTLFIDARQFGYMIDR---KQRAFT 435 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504 D+ +I ++ + + + Y + +IL ++ + Sbjct: 436 DNDIHEIAKVFRNWRKDEN---YENVAGKYYEATTEDIAKHEYILTPGRYVGAVDVEDDG 492 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 + Q + + + ++E Sbjct: 493 VSFAEKMQELTNSLSEQFAESSKLEKQIRKNLEEL 527 >gi|329113898|ref|ZP_08242666.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter pomorum DM001] gi|326696764|gb|EGE48437.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter pomorum DM001] Length = 537 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 108/545 (19%), Positives = 194/545 (35%), Gaps = 67/545 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77 A+ L + + +D+ V L LR + A E + + + +A Sbjct: 41 AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM-----LEDPEAAEDPDEYLAE 95 Query: 78 YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129 F+ S L N+ I + K + + + Sbjct: 96 NIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALDTV-- 153 Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +L ++ S I + D V+ +YE+ + F + +F TP VV Sbjct: 154 --MLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 211 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++L +YDP CG+GG + V G + +GQE Sbjct: 212 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 257 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + +R + +D I+ + + +D RF Y L+NPPF Sbjct: 258 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 307 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 E R+ G P + + +L H+ L G A +VL++ + Sbjct: 308 -----DWWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSMS 358 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 + + E EIRR ++E D+++ +VALP LF+ T I LW L+ K +RRG++ Sbjct: 359 SN--QNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKNPKGWRDRRGEI 416 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481 I+A L + RR + D+ +I D Y + K + + G+ + + Sbjct: 417 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKNAGKYEDIP-GFCKSATLD 472 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + F+L E + S + + K + +Q + + S+K Sbjct: 473 EVEQHGFVLTPGRYVGAEEA---EEDSVPFTERFAALEKTLKEQFAQGDALNAKITASLK 529 Query: 542 SNEAK 546 K Sbjct: 530 LIVQK 534 >gi|218247023|ref|YP_002372394.1| N-6 DNA methylase [Cyanothece sp. PCC 8801] gi|218167501|gb|ACK66238.1| N-6 DNA methylase [Cyanothece sp. PCC 8801] Length = 522 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 120/544 (22%), Positives = 214/544 (39%), Gaps = 53/544 (9%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVR 56 + S SL ++IW A + G + + ILP +RL + + R Sbjct: 11 NNSNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAVKVKTR 70 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKA 113 EK + +L F + + +S+ S L Y IA + K Sbjct: 71 EKAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKG 130 Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 I + DF++TI R L + + S L V ++ YE+LIR+F Sbjct: 131 IIDRVDFNATIHGERELDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE-SG 189 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP++V + ++ P +YDP CG+ G L +A+ Sbjct: 190 KSAGEFYTPKEVGIIMAKIM----------QPQPGMAIYDPCCGSAGLLIKCQLVLAESQ 239 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--- 288 + L +GQE +T A+ M+I +E I+ G + F Sbjct: 240 EKGEKYAPLQLYGQEYTGDTWAMANMNMIIHDMEG--------KIEIGDSFRFPKFKQGG 291 Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKL 346 +F ++NP + + W ++D E GRF G S ++ H+ L Sbjct: 292 NLAQFDRVVANPMWNQNWFTEQDYDGDEW-----GRFPQGAGFPGSKADWGWVQHIWASL 346 Query: 347 ELPPNGGGRAAIVLSSSPLFNG---RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 +L G++AIVL + G E E+R+W +E D+IE ++ LP +LF+ T+ Sbjct: 347 QLH----GQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLFYNTSA 402 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462 + IL+ K+E R+ ++ LINA+ + G + I+D +I+ +++ E Sbjct: 403 PGIILILNKAKSEARKHQLLLINASLEFAK----GDPKNYISDQGINRIVTAFLNWEEQD 458 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 KFSR++ + P R + + + + + +L + Sbjct: 459 KFSRIVSLEEIAKNDYNI-SPSRYIHVTEAEEFRPIGEILQELEELESQAEETNRVLMQV 517 Query: 523 MQQI 526 + + Sbjct: 518 LSKF 521 >gi|189499313|ref|YP_001958783.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1] gi|189494754|gb|ACE03302.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1] Length = 547 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 123/576 (21%), Positives = 222/576 (38%), Gaps = 81/576 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M G+ SL ++IW A + G + + ILP +RL + + + + Sbjct: 1 MANNNGNGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRLCDVFDDELNRIAAEVG 60 Query: 61 AFGGSNIDLESFVKVAGY-----SFYNTSE-YSLSTLGSTNTRNNLES---YIASFSDNA 111 + + + + K+ + F +S+ S + + IA + Sbjct: 61 SRKKAFQLVRADHKLVRFYLPLVPFDPEEPVWSVIRKFSDRIGEGVTTHMRAIARENPLL 120 Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + I + DF++T R L + + S L D V ++ YE+LIR+F Sbjct: 121 QGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKCLGLDDVEADIIGKSYEYLIRKFAEG 180 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP +V + + +L +P +YDP CG+GG L + + Sbjct: 181 GGQSAGEFYTPPEVGTIMSRVL----------APEPGMDIYDPCCGSGGLLVKCEIAMEE 230 Query: 230 CGSHHKIPPIL---------------------------VPHGQELEPETHAVCVAGMLIR 262 K +GQE +T A+ M+I Sbjct: 231 KRREIKEGGHSCPPLHSELNGYPSCNGGLENPPSIAPLKLYGQEYIADTWAMANMNMIIH 290 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHK 317 +E I+ G T F K+ F ++NP + + W E ++ Sbjct: 291 DMEG--------QIEIGDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEADYD 337 Query: 318 NGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-- 373 N EL RF G G P S ++ H+ L GRAAIVL + + G +G Sbjct: 338 NDELDRFPAGAGFPGKSSADWGWIQHIHASLNNS----GRAAIVLDTGAVSRGSGNAGTN 393 Query: 374 -ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 E +R+W ++ND+IE+++ LP +LF+ T + L+ K ER G V L+NA+ ++ Sbjct: 394 KEKSVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNRDKEIEREGCVLLVNASRIFE 453 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILD 491 G + I D+ ++I+D + + + SR+++ + P R + Sbjct: 454 K----GDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVNLAELKKNDYNI-SPSRYIHTGE 508 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 +E + L + L+ +++Q+ Sbjct: 509 AETYRPIEDIVKDLNAIELEARETDEALRKILKQLG 544 >gi|256023433|ref|ZP_05437298.1| predicted type I restriction-modification enzyme, M subunit [Escherichia sp. 4_1_40B] gi|315618356|gb|EFU98944.1| type I restriction-modification system, M subunit [Escherichia coli 3431] Length = 812 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 103/483 (21%), Positives = 189/483 (39%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120 V G SF + L + + + I ++ K + ++ DF Sbjct: 45 YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G+ L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMIDRLSKLVGIFEGLNLSSNRAEGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLL---------LKVNDE 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 L GQE++ T A+ M++ + + I QG+TLS + K Sbjct: 204 ARRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + K RFG G+P +G FL+H+ L+ Sbjct: 257 AFDFAVANPPFSNKNWTNGLTP----KKDPFERFGWGIPPEKNGDYAFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR L++ I+ ++ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469 R+G + +I+A+ + +G K R + +I+D++ R +SRM+ Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTVPGYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 SSE 423 >gi|282865862|ref|ZP_06274911.1| N-6 DNA methylase [Streptomyces sp. ACTE] gi|282559186|gb|EFB64739.1| N-6 DNA methylase [Streptomyces sp. ACTE] Length = 886 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 102/502 (20%), Positives = 184/502 (36%), Gaps = 70/502 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-AFGGS 65 + A L ++ A+ L G +++ I L+R E R ++E+ +G Sbjct: 5 TLAQLERHLFAAADILRGTMDASEYKDYIFGLLFLKRANDEFEAARERIKEQAKRDWGFD 64 Query: 66 NIDLESFVKV-----AGYSFYNTSEYSLSTL--GSTNTRNNL----ESYIASFSDNAKAI 114 +L++F++ + + + + N ++ + ++ + Sbjct: 65 GEELDAFLEQEAPYRERDVLFVPEKARWHEISGVTRNINESVLRPALQLLEGQNEKLTGL 124 Query: 115 FEDFDFSST-------IARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRF 166 F+ DF+ L + +F + L D + YE+LI+ F Sbjct: 125 FDHLDFNRIGGSGAAAGTATLADKRLELLIAHFGRVRLRTDDFEFPDLIGAAYEYLIKEF 184 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 +F TPR VV + LL +P +YDP G+GG L A + Sbjct: 185 ADSAGRKGGEFYTPRAVVRMMVELL----------APTQGMRIYDPCVGSGGMLIHAAEY 234 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V + G + GQ+ + + M++ + ++ G TL++ Sbjct: 235 VEEHGGD---TSDMFFAGQDANSGSWIMSTMNMVLHGV-------RRFDLTTGDTLARPT 284 Query: 287 F----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-ISDGSMLFLMH 341 RF LSNPPF + A E R GL ++FL H Sbjct: 285 HIPTSDADRFDGVLSNPPFSMDYTATDLAHRTE-------RTYYGLTSERGKADLMFLQH 337 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + + + GG V+ LF G GE +IR LL+ D +EA++ L +LF+ T Sbjct: 338 MLWETKKEGR-GGMVITVMPHGVLFRGG---GEQQIRTKLLDEDAVEAVIGLAPNLFYGT 393 Query: 402 NIATYLWIL---------SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 I + +L + + ER GKV INA + + R + ++ + +I Sbjct: 394 GIPACILVLRPPGCKGRDRSEREPERAGKVLFINADREFHAERA----QNVLLPEHAEKI 449 Query: 453 LDIYVSRENGK-FSRMLDYRTF 473 + + FSR++ Sbjct: 450 TTTFRTFAEVPGFSRVVTREEL 471 >gi|288937351|ref|YP_003441410.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella variicola At-22] gi|288892060|gb|ADC60378.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella variicola At-22] Length = 539 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 112/556 (20%), Positives = 201/556 (36%), Gaps = 79/556 (14%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 + +W A L G + +++ V+L L+ + E R ++++ G +++E Sbjct: 16 EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEV 72 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124 F + FY E S + ++++ S I + K D FS Sbjct: 73 FYQQ-DNIFYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + L + IE + ++ +YE+ + +F + +G +F Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP+ VV L T +L +YDP CG+ G ++ V Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +GQEL T+ + + IR L ++ + T D + Y L+N Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPF + + + RF G P + + +++H+ +KL + G A Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 VL++ + SGE EIR ++ENDLI+ ++ALP LFF T I LW ++ K + Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396 Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------- 460 +G+ I+A +L T I K + D I D Y + Sbjct: 397 PAKGYRDRQGETLFIDARNLGTMINRTTK---ELTADDIATIADTYHAWRSTPEELAERV 453 Query: 461 ---NGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + K ++ D G+ ++ + +L + Sbjct: 454 KRGDSKLAQYEDQA--GFCKVATIEEIKANENVLTPGRYVGAAEQEDDGVAFEIKMRELS 511 Query: 517 DILKPMMQQIYPYGWA 532 L M+Q A Sbjct: 512 QTLFAQMKQAQELDNA 527 >gi|253681576|ref|ZP_04862373.1| type I restriction-modification system, M subunit [Clostridium botulinum D str. 1873] gi|253561288|gb|EES90740.1| type I restriction-modification system, M subunit [Clostridium botulinum D str. 1873] Length = 538 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 102/570 (17%), Positives = 219/570 (38%), Gaps = 63/570 (11%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64 +A + + +W+ A L G +++ ILPF R L + + E++ Sbjct: 2 SNAKDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQDEYLKVNGLEEFYEVTD 61 Query: 65 SNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIASFSDNAK------ 112 + E +++ Y Y+ + + ++ + SF+ NAK Sbjct: 62 EDEKEEYLEEISKGIGYAIDPAYTWNKIVSKIEDHKIKASDFQDMFDSFNTNAKRNAVAE 121 Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 +F D + T + E+A L I + D+ ++ ++YE+LI + Sbjct: 122 ADFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFNFKDDSG-RDILGDVYEYLIGQ 180 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + +F TP +V + ++ G +YDPT G+G L Sbjct: 181 FAANAGKKGGEFYTPHEVSQILAKIVTVD-----AHRTGNQFRVYDPTMGSGSLLLTVQK 235 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + + GQEL T+ + +++ + +++ TL D Sbjct: 236 EL----PYGDEEGSVEFFGQELNTTTYNLARMNLMMHGVNYRNME-----LKRADTLDAD 286 Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336 + +F ++NPP+ +KW K+ + RF G G+ S Sbjct: 287 WPFAEKDGTQIPLKFDAVVANPPYSQKWN------TKDVDREKDIRFKGYGVAPASKADY 340 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H L+ G AIVL LF E +IR+ +++N+L++ ++ LP++ Sbjct: 341 AFVLHGLYHLDKA----GTMAIVLPHGVLFRSA---SEGKIRKNIIDNNLLDTVIGLPSN 393 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T+I T + + + + V I+A++ + GK + + D +I+D Y Sbjct: 394 LFYGTSIPTCVLVF-KGREARKNKDVLFIDASNEFEK----GKNQNKLTPDNINKIIDTY 448 Query: 457 VSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 +R++ + +S + + P + ++ + E ++ ++ + Sbjct: 449 HNRQDVEKYSHVASLDEIKENDYNLNIPRYVDTFEEEEVIPLSEVAKELTEVKAEIENSY 508 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + + + + A+ + + I Sbjct: 509 ESLFRLLNELNGTTDEAKDELSKFINLLTK 538 >gi|91787817|ref|YP_548769.1| N-6 DNA methylase [Polaromonas sp. JS666] gi|91697042|gb|ABE43871.1| N-6 DNA methylase [Polaromonas sp. JS666] Length = 535 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 89/472 (18%), Positives = 170/472 (36%), Gaps = 61/472 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65 + +W A+ L + ++ ++L ++ + RS V + Sbjct: 2 LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRSEVATRLADPKDEYF 61 Query: 66 ----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108 + + F+ +L + + ++ I + Sbjct: 62 FEGATPKTLAVELEDRDYYKSVNVFWVPEAARWESLRAAAKQPDIGKRIDEALTLVEVEN 121 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167 K I + + + G L ++ S + + +V ++ +YE+ + F Sbjct: 122 PKLKGILDKRYARAQLPD----GKLGELVDLISTVGFGDNPSVARDILGQVYEYFLGMFA 177 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + F TP +V A+L +YDP CG+GG + + Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAVLNPH-----------SGKVYDPCCGSGGMFVQSEKFI 226 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G +GQE P T + + IR ++ + R+ + T ++ Sbjct: 227 EAHG---GKLGDASIYGQEANPTTWRLAAMNLAIRGIDFNLGREPA------DTFVRNQH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 R + L+NPPF R+ G P + + +L H+ + L+ Sbjct: 278 PDLRADFILANPPFNIS-------DWWHASLTGDARWQYGDPPTGNANYAWLQHMLHHLK 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRA IVL++ + + + E +IR ++E D++E ++ALP LFF T I L Sbjct: 331 PT----GRAGIVLANGSMSSS--QNSEGQIRAAMVEADVVEVMIALPGQLFFNTQIPACL 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 W L +KT +G+V I+A L T I + D+ +I + + Sbjct: 385 WFLVKKKTRR-QGEVLFIDARKLATMISRV---QSEFTDEVIARIANTVAAW 432 >gi|257452048|ref|ZP_05617347.1| type I restriction-modification system DNA methylase [Fusobacterium sp. 3_1_5R] gi|257466153|ref|ZP_05630464.1| type I restriction-modification system DNA methylase [Fusobacterium gonidiaformans ATCC 25563] gi|315917310|ref|ZP_07913550.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563] gi|317058596|ref|ZP_07923081.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R] gi|313684272|gb|EFS21107.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R] gi|313691185|gb|EFS28020.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563] Length = 502 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 109/547 (19%), Positives = 208/547 (38%), Gaps = 63/547 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + IW A LWG D+ KVI+ LR + + E + E+ Sbjct: 1 MAKKSNVKIGFEKEIWDAACVLWGHIPAADYRKVIVGLIFLRYISSSFEKKYKELLEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + + F+ E ST+ + +N I + + K Sbjct: 59 ---GYGFEDDRDAYMEDNIFFVPKEARWSTISAATHTAEIGMVIDNAMRAIEAENKTLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L ++ F + I + ++ YE+ I +F + Sbjct: 116 VLPKIYASPDLDK----RVLGEVVDLFTNNINMEDTEESKDLLGRTYEYCIAQFAAYEGT 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V +L P +YDP CG+GG ++ + Sbjct: 172 KGGEFYTPSSIVKTIVEIL----------KPFDNCRVYDPCCGSGGMFVQSVKFLQAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + GQE +T + M IR ++++ + T DL + + Sbjct: 222 NRNH---ISVFGQESNADTWKMAKMNMAIRGIDANFGPYQA------DTFFNDLHSTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF K + R+ GLP + + ++ H+ + L Sbjct: 273 DFIMANPPFNLSNWGQD-------KLQDDVRWKYGLPPAGNANYAWIQHMVHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L SGE IR+ ++E+DLIE IVA+PT LF+ I LW +S Sbjct: 322 NGKIGLVLANGALST--QTSGEGNIRKAIIEDDLIEGIVAMPTQLFYSVTIPVTLWFISK 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSR 466 K +++GK I+A ++ + K R ++ +++ + + + G F Sbjct: 380 NK--KQKGKTLFIDARNMGFMVDR---KHRDFTEEDIQKLANTFTHFQEGILEDEKGFCA 434 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW--LDILKPMMQ 524 +++ + +L P R I D + R S L F ++ + + Sbjct: 435 VVETEEIRKQDY-ILTPGRYVGIADPEDDGEPFEEKMTRLTSELSDMFEKSHELEDEIRK 493 Query: 525 QIYPYGW 531 ++ G+ Sbjct: 494 KLGAIGY 500 >gi|218281999|ref|ZP_03488311.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989] gi|218216986|gb|EEC90524.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989] Length = 521 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 109/546 (19%), Positives = 199/546 (36%), Gaps = 76/546 (13%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE------- 57 A L +W A DL G ++F IL R L L E Sbjct: 8 AKQQAELHTQLWAMANDLRGSMDASEFKNYILGLIFYRYLSDKLSNFVDEELEDDDISYA 67 Query: 58 -KYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE-----SYIASFSDN 110 + +++ V G Y + STL + + +++ Sbjct: 68 DAWKDEDFKQDIIDALVDDEGGLGYVIEPANLWSTLIDKINVKQFDISMLAKAVNDLTES 127 Query: 111 AKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 + DF + + +++ L+ K+ I H + V+ + Sbjct: 128 TIGLGSQRDFENLFDDMDLNASKLGKSEADRSALIAKVMLKIDDINFHYEDAEIDVLGDA 187 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ V L L+ ++ +YDPTCG+G Sbjct: 188 YEYLIGQFAASAGKKAGEFYTPQQVSKLLAKLVTVGK--------SKLKNVYDPTCGSGS 239 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L K ++ +GQE T+ + ML+ + + +I+ Sbjct: 240 LLLRV----------AKETDVVSFYGQEKVSTTYNLARMNMLLHGVPFN-----HFDIEN 284 Query: 279 GSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDG 334 TL RF ++NPP+ KW D ++ E RF L S Sbjct: 285 NDTLEHPNEEHMKMRFDAVVANPPYSAKWSADPKFLDDE-------RFSAYGKLAPKSKA 337 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVAL 393 F+ H+ L+ G A+VL LF G A E IR++L+ E + ++A++ L Sbjct: 338 DYAFVQHMLYLLDDA----GTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGL 390 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P +LFF T+I T + + KT + I+A+ + GK + + D ++I+ Sbjct: 391 PANLFFGTSIPTCVLVFKKCKTH---DDIFFIDASKEFE----SGKNQNRLTDANIQKIM 443 Query: 454 DIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 D Y++R++ + ++ + P + ++ + ++L Sbjct: 444 DTYLARKDVEKYAHCASLEEIAENDYNLNIPRYVDTFEEEEEIDIHAVMKEIKELEAKRD 503 Query: 513 SFWLDI 518 +I Sbjct: 504 ELDKEI 509 >gi|326319451|ref|YP_004237123.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376287|gb|ADX48556.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 520 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 108/561 (19%), Positives = 198/561 (35%), Gaps = 81/561 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------- 58 + +W A+ L + ++ ++L L+ + + + + Sbjct: 2 LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFTARTAELAARLRDPDDEYF 61 Query: 59 YLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFS 108 Y +I + + F+ + T +++ I + + Sbjct: 62 YGDASDEDIAAELEDRDYYTSANVFWVPEAARWEAIRAAAKQTTIGKHIDDALGLIEAEN 121 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167 K I + + + G L ++ S I D V V+ +YE+ + F Sbjct: 122 PKLKGILDKRYARAQLP----GGKLGELVDLVSTIGFGTDPAVARDVLGQVYEYFLGMFA 177 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + F TP +V A+L +YDP CG+GG + + Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEKFI 226 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + +GQE P T + + IR ++ + R+ + T + + Sbjct: 227 EAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGREPA------DTFTHNQH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 R Y L+NPPF R+ G P + + +L H+ + L+ Sbjct: 278 PDLRADYILANPPFNIS-------DWWHGSLAGDARWHYGDPPQGNANYAWLQHMLHHLK 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRA IVL++ + + + E IR +++ D++E +VALP LFF T I L Sbjct: 331 PT----GRAGIVLANGSMSSS--QNNEGVIRAAMVDADVVEVMVALPGQLFFNTQIPACL 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---NGKF 464 W LS RK +R+G+V I+A L I + ++D +I + + Sbjct: 385 WFLSQRK--KRKGEVLFIDARKLGKMISRV---QAELDDAAIARIAETVAAWRGEVEAGA 439 Query: 465 SRMLDYRTFGYRRIK----------VLRPLRM----SFILDKTGLARLEADITWRKLSPL 510 + G+ R VL P R + D A +T + + Sbjct: 440 TITTYADVPGFCRSVPLPEIAQHGHVLTPGRYVGAEAVENDDEAFAEKMQKLTEKLGEQM 499 Query: 511 HQSFWLDILKPMMQQIYPYGW 531 + LD L + Q++ G+ Sbjct: 500 AKGAELDAL--IRQKLGGLGY 518 >gi|319778988|ref|YP_004129901.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Taylorella equigenitalis MCE9] gi|317109012|gb|ADU91758.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Taylorella equigenitalis MCE9] Length = 497 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 183/460 (39%), Gaps = 54/460 (11%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 +W+ A LWG D+ KVI+ L+ + + + ++ G + + Sbjct: 7 EKQLWEAACKLWGSIPAADYRKVIIGLIFLKYVSTTFDKRFQQLLDE-----GEGFENDI 61 Query: 72 FVKVAGYSFYNTSEYSLSTL-GSTNTR------NNLESYIASFSDNAKAIFEDFDFSSTI 124 + FY E + + +++T +N I + + + + S I Sbjct: 62 DAYTSKNLFYIPEEARWNHISKASHTEKIGVVIDNAMRQIETQNKSLNGVLPKIYASPDI 121 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + +L + F+ + ++ YE+ I F S +F TP + Sbjct: 122 DK----HVLSDVVDLFTNSINFESIEQNKDILGRTYEYCIANFASYEGRRGGEFYTPASI 177 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V +L P +YDP G+GG + + ++ + + Sbjct: 178 VKTMVEIL----------KPQSGMRIYDPCMGSGGMIVQSAKYIEQH---AGKRFSISVY 224 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQE P+T + M IR ++++ + T DL K+F ++NPPF Sbjct: 225 GQESNPDTWKMAKMNMAIRGIDANLGQH------HADTFKNDLHPQKKFDIIMANPPFNL 278 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 ++ VE R+ G+P S+ + ++ H+ + L G+ +VL++ Sbjct: 279 SEWGQENLVE-------DIRWKYGVPPKSNANYAWIQHMIHHLAT----NGKIGLVLANG 327 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 L SGE EIRR ++E+DLIE IVALPT LF+ I LW ++ K +++GK Sbjct: 328 AL--SSQSSGEGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTL 383 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 I+A ++ + R D+ + + +NGK Sbjct: 384 FIDARNIGYMVDRT---HRDFTDEDIDLLAKTFEDFQNGK 420 >gi|300727763|ref|ZP_07061147.1| type I restriction-modification system, M subunit [Prevotella bryantii B14] gi|299774973|gb|EFI71581.1| type I restriction-modification system, M subunit [Prevotella bryantii B14] Length = 511 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 109/534 (20%), Positives = 196/534 (36%), Gaps = 67/534 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 +L NF+++ + G +F I P +R+ + A E+ S D Sbjct: 28 QNLYNFLFEACNIIRGPVSQDNFKDYITPILYYKRISDVYDEETEAALEE------SGGD 81 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--------DNAKAIFEDFDF 120 +E + F + + NL + I D + F Sbjct: 82 MEYATLPEQHRFVIPDGCHWKDVRERS--ENLGAAIVGAMRGIELANPDTLYGVLSMFSA 139 Query: 121 SSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + + + ++ S +L + P +M + YE L+++F + A +F T Sbjct: 140 QKWTDKKNLSDGKIRDLIEHLSTRKLGNNDYPTDLMGDAYEILLKKFADDSKAKAGEFYT 199 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR VV L +L P ++YDP CG+GG L +A++H+ +H Sbjct: 200 PRSVVQLLVRIL----------DPQPGESVYDPACGSGGMLIEAVHHM-----NHSNLCC 244 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYC 295 GQE A+ + + NI QG TL +F Sbjct: 245 GNIFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRNPKILQGGEVAKFDCV 297 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K E + + GR G P S G ++ H+ + G GR Sbjct: 298 IANPPFSLK-----KWGSVEWSSDKYGRNIWGTPSDSCGDYAWIQHMIASMAP---GKGR 349 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A+V+ LF G E IR L+++D++EA+V L LF+ T ++ I+ K Sbjct: 350 MAVVMPQGVLFRG---KEEGHIREKLVKSDMVEAVVTLGDKLFYGTGLSPCFLIIRKMKP 406 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML---DYR 471 ++ +I+ T + T R + I+ ++ ++YV+ EN + FS+++ D Sbjct: 407 AAHSARILMIDGTKILTPKRA----QNILEQKDVDRLFELYVNYENVEDFSQVVTLDDIA 462 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 GY + + + K + + ++ Sbjct: 463 AKGYDLSP-----NKYVQYHREAIKPYTEVLAEFKAAYEEVKLREAEFRKIINA 511 >gi|258654735|ref|YP_003203891.1| type I restriction-modification system, M subunit [Nakamurella multipartita DSM 44233] gi|258557960|gb|ACV80902.1| type I restriction-modification system, M subunit [Nakamurella multipartita DSM 44233] Length = 810 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 107/476 (22%), Positives = 187/476 (39%), Gaps = 74/476 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + L +WK+ ++L G + + IL ++ + Sbjct: 6 SDLYGSLWKSCDELRGGMDASQYKDYILTLLFVKYVSD----------------KAKTDP 49 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTIAR 126 G SF + L+ G + L IA ++ + + + DF+ + Sbjct: 50 NTLIDVPRGGSF----DDMLAAKGDKEIGDRLNKIIAKLAEANGLRNVIDQADFNDE-EK 104 Query: 127 LEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 L K L K+ F+ ++ D ++ + YE+L+R F +E + F TP Sbjct: 105 LGKGKEMQDRLSKLVTIFNDLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPA 164 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V + ++ +T+YDPTCG+G L A + P + Sbjct: 165 EVSRILAKVV------GINSRTRQDKTVYDPTCGSGSLLLKAA---------SEAPRGMT 209 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 +GQE + T A+ M++ E +I +G T++ F + F + + Sbjct: 210 IYGQEKDNATWALSKMNMILHGNEI-------ADIAKGDTITNPQFVSGNHLRTFDFVVM 262 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF K + GRF G P +G FL+H L+ G+AA Sbjct: 263 NPPFSLKSWS-------NGLENDYGRFEYGRPPEKNGDYAFLLHALKSLKSV----GKAA 311 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L LF G A E+ +R+ LL+ I+ I+ LP +LF+ T I + IL Sbjct: 312 IILPHGVLFRGHA---EATVRQRLLKQGFIKGIIGLPPNLFYGTGIPACIVILDKENAVA 368 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 R G V +I+A+ + +G K R + +I+D + + + +SRM+ Sbjct: 369 RTG-VFMIDASKGFM---KDGNKNR-LRSQDIHKIVDTFNKQLEVERYSRMVPLSE 419 >gi|294793176|ref|ZP_06758322.1| type I restriction-modification system, M subunit [Veillonella sp. 6_1_27] gi|294456121|gb|EFG24485.1| type I restriction-modification system, M subunit [Veillonella sp. 6_1_27] Length = 503 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 113/548 (20%), Positives = 210/548 (38%), Gaps = 63/548 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + IW A LWG ++ KVI+ LR + A E + ++ Sbjct: 1 MAAKNNTDIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELIKE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + F+ E +T+ S +N I + K Sbjct: 59 ---GDGFENDRDAYAEENIFFVPEEARWTTIASAAHTPEIGLVIDNAMRAIEKENTTLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L ++ F + +++ ++ YE+ I +F S Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGT 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YDP CG+GG + V Sbjct: 172 KGGEFYTPSSIVKTIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR ++++ + T DL + Sbjct: 222 NRG---TISVYGQESNADTWKMAKMNMAIRGIDANFGPYQA------DTFFNDLHKTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF + K + R+ GLP + + ++ H+ + L Sbjct: 273 DFIMANPPFNLSNWGQE-------KLKDDVRWKYGLPPAGNANYAWIQHMIHHL----GS 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L SGE +IR+ ++E DL+E IVALPT LF+ I LW +S Sbjct: 322 NGKIGLVLANGAL--SSQTSGEGDIRKNIIEADLVEGIVALPTQLFYSVTIPVTLWFISM 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466 K +++GK I+A ++ + K R DD +++ D + S ++G F Sbjct: 380 NK--KQKGKTLFIDARNMGYMVNR---KHRDFTDDDIQRLADTFSSFQDGTLEDVKGFCA 434 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW--LDILKPMMQ 524 ++D + + +L P R I + R S L + F ++ + + Sbjct: 435 VVDTKKIEEQDY-ILTPGRYVGIEAVEEDNEPFEEKMSRLTSELSEMFIKSRELETEIRE 493 Query: 525 QIYPYGWA 532 ++ G+ Sbjct: 494 KLGAIGYD 501 >gi|269140412|ref|YP_003297113.1| type I restriction-modification system, M subunit [Edwardsiella tarda EIB202] gi|267986073|gb|ACY85902.1| type I restriction-modification system, M subunit [Edwardsiella tarda EIB202] Length = 812 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 103/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF + L + + + I ++ + K + ++ DF Sbjct: 45 YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMIDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 L GQE++ T A+ M++ + + I QG+TLS + K Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKICQGNTLSDPQWKEADGRLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + K RF G+P +G FL+H+ L+ Sbjct: 257 AFDFAVANPPFSNKNWTSGLDL----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR L++ I+ I+ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469 R+G + +I+A+ + +G K R + +I+D++ R +SRM+ Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTLPGYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 LSD 423 >gi|170761794|ref|YP_001787475.1| type I restriction-modification system, M subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408783|gb|ACA57194.1| type I restriction-modification system, M subunit [Clostridium botulinum A3 str. Loch Maree] Length = 511 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 111/486 (22%), Positives = 195/486 (40%), Gaps = 69/486 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ + A+L +W A DL G+ + +F IL R L +E + ++ Sbjct: 1 MSVSSEQQANLHARLWDIANDLRGNMEANEFKNYILELIFYRYLSEKVEGRAEDLLKEDN 60 Query: 61 AFGGSNIDLESFVKV------AGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSD 109 + E + + A ++ +Y S+L N + I ++ Sbjct: 61 ISYREAWEDEEYREALQEELLAQIGYFIEPKYLFSSLMKEIETGNFDVEMLQGAINDITE 120 Query: 110 NAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + + DF ++ ++ L+ K+ N S I+ D V+ + Sbjct: 121 STLGHKSEDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDVLGD 180 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI +F + + A +F TP+ V + L+ L +++YDP CG+G Sbjct: 181 AYEYLISQFAATAGKKAGEFYTPQQVSKILAKLVTVGKKDL--------KSVYDPACGSG 232 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L K + +GQEL T+ + ML+ + + +I+ Sbjct: 233 SLLLRVS----------KEANVRYFYGQELTSTTYNLARMNMLLHDISYER-----FDIR 277 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGS 335 TL +F ++NPP+ KW D ++ E RF L S Sbjct: 278 NDDTLENPEHIDMKFDAVVANPPYSAKWSADNKFLDDE-------RFSAYGKLAPKSKAD 330 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394 F+ H+ +L N GG A+VL LF G A E IR++L+ E + ++ I+ LP Sbjct: 331 YAFVQHMIYQL----NDGGTMAVVLPHGVLFRGAA---EGVIRKYLIKEKNYLDGIIGLP 383 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 ++FF T+I T + + +K E V I+A+ + GK + ++ D +I+ Sbjct: 384 PNIFFGTSIPTAILVF--KKCRENSDNVIFIDASREFEK----GKNQNVLRDCDVEKIIS 437 Query: 455 IYVSRE 460 YV RE Sbjct: 438 TYVKRE 443 >gi|285959361|gb|ADC39983.1| type I restriction-modification system DNA methylase [Staphylococcus aureus] Length = 518 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 108/533 (20%), Positives = 203/533 (38%), Gaps = 69/533 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + + ++ Sbjct: 9 QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68 Query: 66 NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114 + E + + F + S L E I ++ + Sbjct: 69 AWEDEEYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + DF A ++ + L+ K+ N + + + ++ + YE+L Sbjct: 129 DSEEDFDHLFADMDLNATRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + ++ ++ +YDPTCG+G L Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + +GQE T + ML+ + I TL Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F G++F ++NPP+ KW D ++ E +G L S F+ H+ Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 + L + G A+VL LF G A E IR++L+E + ++A++ LP +LFF T Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + + +K E V I+A+ + GK + ++ D+ +I++ Y +RE Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNLLTDEDVDKIVETYRNRET 447 Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 KFS + + P ++ ++ D+ ++L+ + + Sbjct: 448 IDKFSYVATLDEIKDNDYNLNIP---RYVDTFEEEEPIDLDLVQQQLTDIDKE 497 >gi|331671460|ref|ZP_08372258.1| putative type I restriction-modification system, M subunit [Escherichia coli TA280] gi|331071305|gb|EGI42662.1| putative type I restriction-modification system, M subunit [Escherichia coli TA280] Length = 539 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 109/524 (20%), Positives = 188/524 (35%), Gaps = 81/524 (15%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + + RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +GK I+A +L T I K + + I D Y + Sbjct: 400 GYRDRQGKTLFIDARNLGTMISRTTK---ELTTEDIATIADTYHA--------------- 441 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R L + L + E + K++ L D Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDND 482 >gi|198242593|ref|YP_002218397.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205355247|ref|YP_002229048.1| type I restriction-modification system methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859652|ref|YP_002246303.1| type I restriction-modification system methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|1679866|emb|CAA68057.1| Sty SBLI [Salmonella enterica] gi|197937109|gb|ACH74442.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205275028|emb|CAR40114.1| Type I restriction-modification system methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206711455|emb|CAR35839.1| Type I restriction-modification system methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626205|gb|EGE32550.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630410|gb|EGE36753.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 539 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 112/529 (21%), Positives = 200/529 (37%), Gaps = 81/529 (15%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 + +W A L G + +++ V+L L+ + E R + ++ G +++E Sbjct: 16 EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQMEDE---GQGDFLEMEV 72 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124 F + FY E S + ++++ S I + + K D FS Sbjct: 73 FYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYFSRQN 131 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + L + IE + ++ +YE+ + +F + +G +F Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP+ VV L T +L +YDP CG+ G ++ V Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +GQEL T+ + + IR L ++ + T D + Y L+N Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPF + + + RF G P + + +++H+ +KL + G A Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 VL++ + SGE+EIR ++ENDLI+ ++ALP LFF T I LW ++ K + Sbjct: 339 FVLANGSM--SSNTSGEAEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396 Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 +G+ I+A +L T I K + D I D Y + + Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMINRTTK---ELTADDIATIADTYHAWRSTP------- 446 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 V R R LA+ E + K++ + + D + Sbjct: 447 ------EELVERVKRGDSQ-----LAQYEDQAGFCKVATIAEIKANDSV 484 >gi|149915111|ref|ZP_01903639.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b] gi|149810832|gb|EDM70671.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b] Length = 508 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 104/502 (20%), Positives = 196/502 (39%), Gaps = 61/502 (12%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 + ++ A+ + G ++ V L LR + A E R+ E + Sbjct: 5 IEKILFSAADKMRGAMDPGEYKHVALGLLFLRYVSAAFEAKRAEFAE-----DDLIDLED 59 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFEDFDFSST 123 A F+ L + +++ I + + + Sbjct: 60 PEEYQAESVFWVPEGARWDRLAANAKAHDIGVQVDDAMREIERANPTLQDALPKVYGRAN 119 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + R ++ + + F+ +ELH + ++ IYE+ I F S + +F TP+ V Sbjct: 120 LDR----SIVTGLIEMFTNLELHGTSADFDLIGRIYEYFIGEFASSEGKRGGEFYTPKSV 175 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V + +L +YDP CGTGGF + + + + Sbjct: 176 VSVLVEML-----------EPTSGRVYDPCCGTGGFFVQSEKFIEAHQGRIG---DIAVY 221 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQE T + + IR + D R + TL ++ F +RF + L+NPPF Sbjct: 222 GQERNHTTFRLARMNLAIRGILGDIRWNQEG------TLKRNAFPDERFDFILANPPFNI 275 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + E R+ G P + + + ++ H+ + L + G A +V+++ Sbjct: 276 S-------DWDSDQLREDHRWKFGTPPVGNANFAWMAHVHHHL----SANGIAGVVMANG 324 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------- 415 + SGE EIR+ +++ D ++AIVALP LFF T I LWIL+ K+ Sbjct: 325 SM--SSMQSGEGEIRKAMVQQDAVDAIVALPGQLFFGTQIPACLWILAKDKSNGQAAGRT 382 Query: 416 -EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 +RR +V I+A + I +K++ +++D+ +I Y + G+ G Sbjct: 383 LRDRRQEVLFIDARKMGALIPGS-RKQKKLSEDEIGKIAGAYHAWR-GELGDDAYADEPG 440 Query: 475 YRR-IKVLRPLRMSFILDKTGL 495 + + ++ + +F+L Sbjct: 441 FCKAARIDEIEQHNFVLTPGRY 462 >gi|238755001|ref|ZP_04616349.1| Type I restriction-modification system methyltransferase subunit like protein [Yersinia ruckeri ATCC 29473] gi|238706705|gb|EEP99074.1| Type I restriction-modification system methyltransferase subunit like protein [Yersinia ruckeri ATCC 29473] Length = 534 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 102/518 (19%), Positives = 196/518 (37%), Gaps = 72/518 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + + + +D++ F + Sbjct: 17 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRKQLID---NGQEAFVDMDVFYQ 73 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 F+ E S + + ++++ S I + + D FS + Sbjct: 74 Q-DNVFFLPPEARWSFVKARAKQDDIAVIIDTALSTIEKRNASLTGALPDNYFSRQGLEV 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 ++ L +N + D + ++ +YE+ + +F + +G +F TP+ VV L Sbjct: 133 KRLASLIDSIENIDTLANESDLTEEDLVGRVYEYFLGKFAASEGKGGGEFYTPKAVVTLL 192 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 +L +YDP CG+GG ++ + + +GQEL Sbjct: 193 AEML-----------EPYQGKIYDPCCGSGGMFVQSLKFIESHK---GKSRDIAIYGQEL 238 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + + +R L + + T D + + ++NPPF Sbjct: 239 TSTTYKLAKMNLAVRGLSGNLGE------RAADTFFADQHPDLKADFIMANPPFNL---- 288 Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 E + RF G P + + +++H+ +KL G A + S Sbjct: 289 --KDWRNEAELTNDPRFAGFRTPPTGNANYAWILHMLSKLSEDGTAGFVLA---NGSMSS 343 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERR 419 N SGE EIR+ L+E+D IE ++ALP LFF T I LW +S K +RR Sbjct: 344 N---TSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFISKSKKANPQYGYRDRR 400 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 G+ I+A +L T + ++ + + I D + + + Sbjct: 401 GETLFIDARNLGTMVSRT---QKELTKEDIATIADTFHAWRSS----------------- 440 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 L+ ++ G+ + + + K++ L D Sbjct: 441 -ESELKRRIESNEIGVEQYQDQAGFCKVATLDDMKAND 477 >gi|320528569|ref|ZP_08029726.1| type I restriction-modification system, M subunit [Solobacterium moorei F0204] gi|320131155|gb|EFW23728.1| type I restriction-modification system, M subunit [Solobacterium moorei F0204] Length = 521 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 110/546 (20%), Positives = 199/546 (36%), Gaps = 76/546 (13%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE------- 57 A L +W A DL G ++F IL R L L E Sbjct: 8 AKQQAELHTQLWAMANDLRGSMDASEFKNYILGLIFYRYLSDKLSNFVDEELEDDDISYA 67 Query: 58 -KYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE-----SYIASFSDN 110 + +++ V G Y + STL + + +++ Sbjct: 68 DAWKDEDFKQDIIDALVDDEGGLGYVIEPANLWSTLIDKINVKQFDISMLAKAVNDLTES 127 Query: 111 AKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 + DF + + +++ L+ K+ I H + V+ + Sbjct: 128 TIGLGSQRDFENLFDDMDLNASKLGKSEADRSVLIAKVMLKIDDINFHYEDAEIDVLGDA 187 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ V L L+ ++ +YDPTCG+G Sbjct: 188 YEYLIGQFAASAGKKAGEFYTPQQVSKLLAKLVTVGK--------SKLKNVYDPTCGSGS 239 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L K ++ +GQE T+ + ML+ + + +I+ Sbjct: 240 LLLRV----------AKETDVVSFYGQEKVSTTYNLARMNMLLHGVPFN-----HFDIEN 284 Query: 279 GSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDG 334 TL RF ++NPP+ KW D ++ E RF L S Sbjct: 285 NDTLEHPNEEHMKMRFDAVVANPPYSAKWSADPKFLDDE-------RFSAYGKLAPKSKA 337 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVAL 393 F+ H+ L+ G A+VL LF G A E IR++L+ E + ++A++ L Sbjct: 338 DYAFIQHMLYLLDDA----GTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGL 390 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P +LFF T+I T + + KT V I+A+ + GK + + D ++I+ Sbjct: 391 PANLFFGTSIPTCVLVFKKCKTH---DDVFFIDASKEFE----SGKNQNRLTDANIQKIM 443 Query: 454 DIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 D Y++R++ + ++ + P + ++ + ++L Sbjct: 444 DTYLARKDVEKYAHCASLEEIDENDYNLNIPRYVDTFEEEEEIDIHAVMKEIKELEAKRD 503 Query: 513 SFWLDI 518 +I Sbjct: 504 ELDKEI 509 >gi|268323495|emb|CBH37083.1| putative type I restriction-modification system DNA methylase (M protein) [uncultured archaeon] Length = 517 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 100/558 (17%), Positives = 181/558 (32%), Gaps = 56/558 (10%) Query: 1 MTEFTGSAAS--LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + L +WK A+ L + ++ + L L+ + A E +K Sbjct: 1 MAKNEIKTEEEPLEKQLWKAADKLRKNIDAAEYKHIALGLIFLKYISDAFEGLYHK-LQK 59 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 + A F+ S L + + + I + Sbjct: 60 GEGDYAGADPEDRDEYKAENVFFVPEIARWSYLQARAKQPEIGKDVDFAMDAIEKENPLL 119 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170 K + + L + I L ++ +++E+ + F Sbjct: 120 KGVLPKVYARGNL----DPTSLGGLIDLVGNIALGDAKARSADILGHVFEYFLGEFALAE 175 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TPR VV L +L ++DP CG+GG + VA Sbjct: 176 GKKGGQFYTPRSVVQLLVEML-----------EPYNGRVFDPCCGSGGMFVHSEKFVAQH 224 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + +GQE T +C + IR +S + ++ + D Sbjct: 225 QGQVN---DISIYGQESNQTTWRLCKMNLAIRSTDSSQVKWNNEG-----SFLNDAHKDL 276 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + Y ++NPPF + GR+ G+P + + ++ H L Sbjct: 277 KADYVIANPPFNDSDWSGD-------LLRKDGRWNYGVPPTGNANYAWIQHFLYHLSPSG 329 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G VL+ L + A GE EIR+ L+E LI+ IV LP LF T I LW L Sbjct: 330 QTG----FVLAKGALTSKTA--GEGEIRKELVEARLIDCIVNLPPKLFLNTQIPASLWFL 383 Query: 411 SNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 S K R ++ I+A ++ I + R + ++ +I + Y + N Sbjct: 384 SRNKANGKYRNRTDELLFIDARNMGHLINR---RTREFSKEEIEKIAETYHNWRNPDG-D 439 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 D + F + R + ++L L D + + + + ++ Sbjct: 440 YKDVKGFC-NSASIERVKELDYVLTPGRYVGLPDDEDDFDFNERFSKLKTEFEEQLKEEA 498 Query: 527 YPYGWAESFVKESIKSNE 544 + +E Sbjct: 499 ELNRKILENLARVSVKDE 516 >gi|307721265|ref|YP_003892405.1| type I restriction-modification system, M subunit [Sulfurimonas autotrophica DSM 16294] gi|306979358|gb|ADN09393.1| type I restriction-modification system, M subunit [Sulfurimonas autotrophica DSM 16294] Length = 520 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 104/547 (19%), Positives = 201/547 (36%), Gaps = 82/547 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E L +W A L G +F IL F + L + + ++ Sbjct: 1 MSEEQKKL--LEQQLWNIANTLRGKMDADEFRDYILGFIFYKYLSEKINDYADNLLKEDK 58 Query: 61 ---------AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + G + Y L + + ++ ++I ++ Sbjct: 59 ILFCDLDENSEEGKEMLEAIKEDAIESLGYFLKPSELFSAVAKRGNSDTNNFI---LEDL 115 Query: 112 KAIFEDF-----------DFSSTIARLE------------KAGLLYKICKNFSGIELHPD 148 I + DF L+ K L+ K+ + I+ Sbjct: 116 TGILRNIEQSTMGHESEDDFEHLFEDLDLTSTKLGKTEEAKNKLIAKVLSHLDKIDFELK 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V+ + YE+LI +F S + A +F TP+ V + ++ +++ Sbjct: 176 NHDRDVLGDAYEYLIAQFASGAGKKAGEFYTPQQVSKILAKIV--------TNKKTKLKS 227 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDPTCG+G L V D + +GQEL T+ + M++ + Sbjct: 228 VYDPTCGSGSLLLRVAKEVQD---------VSNFYGQELNRTTYNLARMNMIMHDVH--- 275 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 +I+Q TL KRF ++NPPF W + + + + L Sbjct: 276 --YRKFDIKQEDTLENPQHRDKRFEAIVANPPFSAHWSANPLFMSDDRFSQY-----GKL 328 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387 S F+ H+ +L + G A+VL LF G A E IRR+L+E+ + + Sbjct: 329 APKSKADYAFVQHMIYQL----DDNGTMAVVLPHGVLFRGAA---EGHIRRYLIEDRNYL 381 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 +A++ LP ++F+ T+I T + + +K E V I+A++ + +N + ++ D+ Sbjct: 382 DAVIGLPANIFYGTSIPTCILVF--KKCREDSENVLFIDASNEFEKAKN----QNVLTDE 435 Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +I+ + R K+S + + + P ++ ++ + ++ Sbjct: 436 NIDKIITTFKERSTIDKYSHLATLKEIKENDYNLNIP---RYVDTFEEEEPIDLNAVSQE 492 Query: 507 LSPLHQS 513 L L Sbjct: 493 LKALENE 499 >gi|238921301|ref|YP_002934816.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri 93-146] gi|238870870|gb|ACR70581.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri 93-146] Length = 812 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 103/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF + L + + + I ++ + K + ++ DF Sbjct: 45 YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMMDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGK 290 L GQE++ T A+ M++ + + I QG+TLS + K Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKVANGKLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + K RF G+P +G FL+H+ L+ Sbjct: 257 TFDFAVANPPFSNKNWTSGLDL----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR L++ I+ I+ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469 R+G + +I+A+ + +G K R + +I+D++ R +SRM+ Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTLPGYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 LSD 423 >gi|156932818|ref|YP_001436734.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894] gi|156531072|gb|ABU75898.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894] Length = 569 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 106/608 (17%), Positives = 190/608 (31%), Gaps = 114/608 (18%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56 M L N WK A+ L + ++ V+L L+ + A E + + Sbjct: 1 MNNAEQQFLNELDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELMTLF 60 Query: 57 --------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95 E+Y +++E + F+ TL + Sbjct: 61 RDVGNPDNIYAISRDDYSSDEEYAQALLDELEVEDYY-TEKNVFWVPKAARWETLKNKAM 119 Query: 96 ------------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG 131 +N I + K I Sbjct: 120 LPTGTVLWVDETTGQDVKLRSVSWLVDNALDEIEKTNPKLKGILNRISQYQLG-----NE 174 Query: 132 LLYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +L + FS ++ ++YE+ + +F + + TP+ + Sbjct: 175 VLTGLINTFSDANFSNPEYNGEKLSLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSI 234 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPP 238 V L +L +YDP G+GGF + + + + Sbjct: 235 VTLIVEML-----------QPYNGRVYDPAMGSGGFFVSSDRFIEEHAGEKHYNAAEQKQ 283 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +GQE P T + M IR ++ + + TL D R + ++N Sbjct: 284 KISVYGQESNPTTWRLAAMNMAIRGIDFNFGT------KNADTLLDDQHPDLRADFVMAN 337 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF K K R+ G P + + ++ H+ + L G A + Sbjct: 338 PPFNMKEW-------WSAKLENDVRWKYGTPPQGNANFAWMQHMIHHLAPK---GSMALL 387 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT--- 415 + + S N E EIRR L+E DL+E +VALP LF T I +W L+ KT Sbjct: 388 LANGSMSSNTNN---EGEIRRNLIEADLVECMVALPGQLFTNTQIPACIWFLTKDKTGGN 444 Query: 416 --EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 R+G+V I+A + + R R + +I D + + K D Sbjct: 445 GKAHRKGEVLFIDARKIGFMKDRVL----RDFTREDIAKIADTFHKWQADK--DYEDEAG 498 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 F + + + F+L + + + Q+ Sbjct: 499 FCFSA-TLEDIQKNDFVLTPGRYVGAAEQ---EEDDEPFAEKMARLTAQLKDQLEESAKL 554 Query: 533 ESFVKESI 540 E+ +K ++ Sbjct: 555 EAQIKANL 562 >gi|229165871|ref|ZP_04293637.1| Type I restriction-modification system, M subunit [Bacillus cereus AH621] gi|228617576|gb|EEK74635.1| Type I restriction-modification system, M subunit [Bacillus cereus AH621] Length = 538 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 99/496 (19%), Positives = 198/496 (39%), Gaps = 62/496 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64 +A + + +W+ A L G +++ ILPF R L + + E++ Sbjct: 2 SNATDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQDEYLKVNDLEEFYEVTD 61 Query: 65 SNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIASFSDNAK------ 112 + +++ Y Y+ + S ++ + SF+ NAK Sbjct: 62 DTEKEDYLEEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSFNTNAKRNAIAE 121 Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 +F D + T + E+A L I + D+ ++ ++YE+LI + Sbjct: 122 ADFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFTFKDDSG-HDILGDVYEYLIGQ 180 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + +F TP +V + ++ G +YDPT G+G L N Sbjct: 181 FAANAGKKGGEFYTPHEVSQVLAKIVTID-----AAGTGDQFRVYDPTMGSGSLLLTVQN 235 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + + +GQEL T+ + +++ + +++ TL D Sbjct: 236 EL----PNGDEEGSVEFYGQELNTTTYNLARMNLMMHGVNYRNME-----LKRADTLDAD 286 Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336 + +F ++NPP+ +KW D V++E + RF G G+ S Sbjct: 287 WPFAEKDGTQIPLKFDAVVANPPYSQKW--DTKDVDRE----KDTRFKGYGVAPASKADY 340 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H L+ G AIVL LF G E IR+ +++N+L++ ++ LP + Sbjct: 341 AFILHGLYHLDKA----GTMAIVLPHGVLFRGA---SEGRIRKNIIDNNLLDTVIGLPAN 393 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T I T + + + + + I+A++ + GK + ++ + +I++ Y Sbjct: 394 LFYGTGIPTCVLVF-KGREARKNKDILFIDASNEFEK----GKNQNKLSAENINKIIETY 448 Query: 457 VSRENGKFSRMLDYRT 472 RE+ + + Sbjct: 449 SIREDVEKYAHVASLD 464 >gi|119632845|gb|ABL84420.1| type I DNA methylase [Klebsiella pneumoniae subsp. pneumoniae] Length = 539 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 112/556 (20%), Positives = 202/556 (36%), Gaps = 79/556 (14%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 + +W A L G + +++ V+L L+ + E R ++++ G +++E Sbjct: 16 EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEV 72 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124 F + FY E S + ++++ S I + K D FS Sbjct: 73 FYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + L + IE + ++ +YE+ + +F + +G +F Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP+ VV L T +L +YDP CG+ G ++ V Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +GQEL T+ + + IR L ++ + T D + Y L+N Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPF + + + RF G P + + +++H+ +KL + G A Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 VL++ + SGE EIR ++ENDLI+ ++ALP LFF T I LW ++ K + Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396 Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------- 460 +G+ I+A +L T I K + D I D Y + Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMINRTTK---ELTADDIVTIADTYHAWRSTPEELAERV 453 Query: 461 ---NGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + K ++ D G+ ++ + ++L + Sbjct: 454 KRGDSKLAQYEDRA--GFCKVATIAEIKANDYVLTPGRYVGAAEQEDDGVAFEIKMRELS 511 Query: 517 DILKPMMQQIYPYGWA 532 L M+Q A Sbjct: 512 QTLFAQMKQAEELDKA 527 >gi|320526800|ref|ZP_08027990.1| putative type I restriction-modification system, M subunit [Solobacterium moorei F0204] gi|320132768|gb|EFW25308.1| putative type I restriction-modification system, M subunit [Solobacterium moorei F0204] Length = 510 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 109/545 (20%), Positives = 196/545 (35%), Gaps = 68/545 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + IW A LWG ++ KVI+ LR + A E + ++ Sbjct: 1 MVSKNNTNIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFERRYDELLKE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + FY E S + S +N I + + K Sbjct: 59 ---GEGFENDRDAYAEENIFYVPEEARWSKIASAAHTPEIGAVIDNAMRSIEKENTSLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L ++ F + I++ + ++ YE+ I +F + Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEIKMDGTELSKDLLGRTYEYCIAQFAAYEGA 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V A+L P +YDP CG+GG + V Sbjct: 172 KGGEFYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSD 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + I + +GQE +T + M IR ++++ T D+ + Sbjct: 222 NRGI---ISVYGQESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKS 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF K R+ G+P + + ++ H+ L Sbjct: 273 DFIMANPPFNLSNWGAD-------KLKVDPRWKYGVPPSGNANYAWIQHMIYHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L SGE EIR+ ++E+DLIE IVALPT LF+ I LW +S Sbjct: 322 NGKIGLVLANGAL--SSQSSGEGEIRKKIIEDDLIEGIVALPTQLFYSVTIPVTLWFISR 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKF 464 K +++GK I+A + + K R + + + +NG Sbjct: 380 NK--KQKGKTLFIDARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNG-- 432 Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + G+ I + + +IL +E + + L M Sbjct: 433 ---VLKEKKGFSAIATIEDIAKQDYILTPGRYVGIEEQKDDGEPFGEKMTRLTSELSGMF 489 Query: 524 QQIYP 528 ++ + Sbjct: 490 EKSHE 494 >gi|306815459|ref|ZP_07449608.1| putative type I restriction-modification system methyltransferase subunit; (hsdM-like) protein [Escherichia coli NC101] gi|305851121|gb|EFM51576.1| putative type I restriction-modification system methyltransferase subunit; (hsdM-like) protein [Escherichia coli NC101] Length = 539 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 115/574 (20%), Positives = 204/574 (35%), Gaps = 84/574 (14%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + + RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +G+ I+A +L T I K + + I D Y + Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTTEDIATIADTYHA--------------- 441 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 R L + L + E + K++ L D + + + E Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQEE 498 Query: 534 S-FVKESIKSNEAKTL--KVKASKSFIVAFINAF 564 E+ +KTL ++K ++ A Sbjct: 499 DGVAFETKMRELSKTLFEQMKQAEELDRAIRKNL 532 >gi|240171167|ref|ZP_04749826.1| putative type I restriction/modification system DNA methylase [Mycobacterium kansasii ATCC 12478] Length = 520 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 106/559 (18%), Positives = 205/559 (36%), Gaps = 75/559 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK+A+ L G + + VIL L+ L A R A+ A G Sbjct: 10 STLKELQDTLWKSADKLRGSIGASQYKDVILGLLFLKYLSDADTEQRIAIGATLSAGG-- 67 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-----YIASFSDNAKAIFEDFD- 119 +F L + ++ + I + D+A + Sbjct: 68 ---------TDRGAFTVPPNARWELLAAHAEGKSVVAGEPAKSIGALIDDAMDAVMQANP 118 Query: 120 -FSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVS 171 + ++ R+ L ++ FS + +M +YE+ + F Sbjct: 119 ALAVSLPRMYNRDNIDQRRLGELVGLFSTARFSRQGEHRARDLMGEVYEYFVGNFARAEG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP VV + +L +YDP CG+GG A + Sbjct: 179 KRGGEFFTPASVVKVIVEVL-----------EPSRGRVYDPCCGSGGMFVQAEKFAYEHS 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE ET + + + ++ +K ++ G T D G R Sbjct: 228 GDVN---DICIYGQESVEETWRMAKMNLAVHGID-------NKGLRWGDTFVCDQHAGVR 277 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF ++ ++ + R+ G+P ++ + ++ H+ +KL Sbjct: 278 MDYVMANPPFN---------IKDWARDEKDPRWRFGVPPANNANYAWIQHILSKLAP--- 325 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRA +V+++ + +GE IR +++ DL+ +VALP LF T I LW + Sbjct: 326 -GGRAGVVMANGSM--SSNSNGEGIIRAHIVDADLVSCMVALPAQLFRSTGIPVCLWFFA 382 Query: 412 NRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF- 464 K +R G+V I+A + + R + ++ I D Y + + Sbjct: 383 MDKKAGCQGAIDRSGQVLFIDAREFGHLVDRTE---RALAAEEITLIGDTYHAWRGTRSA 439 Query: 465 -SRMLDYRTF-GYRRIKVLRPLR-MSFILDKTG-LARLEADITWRKLSPLHQSFWLDILK 520 S+ + Y+ G+ + +L +R ++ L + E + + D+L Sbjct: 440 GSKSIAYQDVCGFCKSVMLAEIRAANYALTPGRYVDAPETECDGEPIGGDITRLTEDLLT 499 Query: 521 PMMQQIYPYGWAESFVKES 539 + + +K Sbjct: 500 ALDESARLETVLRKQLKRL 518 >gi|154492485|ref|ZP_02032111.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC 43184] gi|254881870|ref|ZP_05254580.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|154087710|gb|EDN86755.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC 43184] gi|254834663|gb|EET14972.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 513 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 88/542 (16%), Positives = 187/542 (34%), Gaps = 70/542 (12%) Query: 1 MTEFTGSA----ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + + ++ +W +A +L G+ ++ V+L L+ + + + Sbjct: 1 MAKKAKTKDVAKKTIEQTLWDSANELRGNLDAAEYKSVVLGLVFLKYINDCFKVKHDELV 60 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSD 109 + G+ + + + F+ ++ + + + + + Sbjct: 61 AE-----GAGFEEDPDEYIGDNIFFVPTDARWDKIVKASLTAEIGVVIDTAMEALEQENR 115 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 K+I + + L + F T V+ +YE+ + F E Sbjct: 116 QLKSILPKNYARPELDK----RRLGNVIDIFENNLHFTGTEARDVLGRVYEYFLGEFARE 171 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TP VV ++ ++DP CG+GG + + Sbjct: 172 EGKKGGEFYTPSCVVRTIVEVI-----------QPYKGKIFDPACGSGGMFVQSSKFIER 220 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + + +GQEL T + + I +E++ G + D Sbjct: 221 HRGNIN---QISVYGQELNSNTWKLAQMNLAICGIEANFGDS------FGDSFHDDKHPF 271 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + + ++NPPF + + R+ G+P + + ++ H+ L Sbjct: 272 LKADFVMANPPFNISKWGGD-------QLRDDPRWQYGIPPEGNANFAWMQHMLYHLAD- 323 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GR +VL++ L E EIR+ ++ DL+E IVA+P+ LF+ I LW Sbjct: 324 ---NGRIGLVLANGSL--SSQQGTEGEIRKNIVNADLVEGIVAMPSQLFYNVQIPCCLWF 378 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGK-----KRRIINDDQRRQILDIYVSRENGKF 464 L+ +K + GK I+A ++ + + + + +I + + G Sbjct: 379 LTKKKAQ--PGKTLFIDARNMGYMKDRTHRELSCGEETEDHGNDIGRIAETFEQFRAG-- 434 Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTG---LARLEAD-ITWRKLSPLHQSFWLDIL 519 G+ I + + FIL +A +E D +++ S D+ Sbjct: 435 ---TLETEKGFSAIATIEDIEKQDFILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLF 491 Query: 520 KP 521 Sbjct: 492 AQ 493 >gi|42525032|ref|NP_970412.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus HD100] gi|39577243|emb|CAE81066.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus HD100] Length = 585 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 113/493 (22%), Positives = 193/493 (39%), Gaps = 65/493 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63 + + +W + G ++ IL ++ L E +++ + Sbjct: 5 TQDEINKILWDACDTFRGVVDAGEYKNYILTMLFIKYLSDTYEEKYEEYEKQFGGNESRI 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-- 121 ++ E+FV G F + LE + + + +F + F+ Sbjct: 65 KRALEKENFVLPVGCHFKDIYAQKEEKNIGEIIDIALEKIEKANKEKLENVFRNVSFNSE 124 Query: 122 -STIARLEKAGLLYKICKNFSGIELHP---DTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + ++ L + +F+ +L+ + V+ N YE+LI F + + A +F Sbjct: 125 ANLGKTKDRNARLKHLLDDFNNQKLNMRKSNIGDLDVIGNAYEYLIANFAAGAGKKAGEF 184 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V L L+ +P +YDPTCG+G L + G + Sbjct: 185 YTPSEVSQLLAKLV----------APQKGNRIYDPTCGSGSLLIRCAEQLTKKGEN---- 230 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFH 293 +GQE+ T A+ M + + I+ G T+ L +F Sbjct: 231 -DFQIYGQEITGATWALAKMNMFLHGFDRSV-------IENGDTIRSPLHLEDDTIMKFD 282 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + +E KN RF G+P S G + F+ H+ L N Sbjct: 283 IVVANPPFSL-----EKWGIEEAKNDPYDRFSYGIPPQSYGELAFVQHMIASL----NEN 333 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN------DLIEAIVALPTDLFFRTNIATYL 407 G+AA+VL LF G S E +IR +++ DL+EA++ LPT+LFF T I + Sbjct: 334 GKAAVVLPHGVLFRG---SSEQKIREGIIKGTDVLKGDLLEAVIGLPTNLFFGTGIPAAI 390 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-------- 459 +L+ K ER+GKV INA + GK + + I+ + Sbjct: 391 MVLNKNKPVERKGKVLFINADLEFQE----GKNQNKLRVSDIDHIVKNFKEFKTENLYRH 446 Query: 460 ENGKFSRMLDYRT 472 E FSR++D R Sbjct: 447 EEKHFSRVVDVRD 459 >gi|325121239|gb|ADY80762.1| type I site-specific deoxyribonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 523 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 103/501 (20%), Positives = 191/501 (38%), Gaps = 75/501 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------- 47 MT+ L +W A L G +F IL + L Sbjct: 1 MTQ--VQLQELQKQLWNIANTLRGKMGADEFRDYILGLIFYKYLSEKVLNSANAELADEG 58 Query: 48 -----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 L+ + +E A +++ + F++ +E ++L Sbjct: 59 IEFPDLDASNEEHQEFLEALKQESLENMGYFLEPNQLFHSIAE---RAKKEEFILDDLIK 115 Query: 103 YIASFSDNAKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTV 150 + S + + DF+ L ++ L+ K+ + I+ Sbjct: 116 TLKSIEQSTQDADSADDFAHLFEDLDLTSTKLGNNANDRNELIAKVIIHLDAIDFDISNT 175 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ + YE+LI F S + A +F TP+ V L ++ + +R++Y Sbjct: 176 ESDVLGDAYEYLIGEFASGAGKKAGEFYTPQMVSTLLARIVTQGKE--------RLRSVY 227 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L V + + +GQE+ T+ + M++ + Sbjct: 228 DPTCGSGSLLLRVKREVGNH--------VDAIYGQEMNRTTYNLARMNMILHDVHF---- 275 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 +I+Q TL K K+F ++NPPF KW D + E L Sbjct: 276 -SKFDIRQEDTLKKPQHLDKKFDAIVANPPFSAKWSADPLFMNDERFKSY-----GKLAP 329 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389 S M F+ H+ +L+ G A+VL LF G S E IR++++E ++I+ Sbjct: 330 SSKADMAFVQHMLYQLDEH----GTMAVVLPHGVLFRG---SSEGHIRQFMIEQMNVIDT 382 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP ++F+ T+I T + +L +K E + + I+A++ + +N + + + Sbjct: 383 IIGLPANIFYGTSIPTCILVL--KKNREHKDNILFIDASNEFEKQKN----QNKLLPEHL 436 Query: 450 RQILDIYVSRENGKFSRMLDY 470 I+ Y +R+N + Sbjct: 437 DNIIGAYENRQNIDKYAYVAT 457 >gi|323965459|gb|EGB60914.1| N-6 DNA methylase [Escherichia coli M863] gi|327250266|gb|EGE61985.1| N-6 DNA Methylase family protein [Escherichia coli STEC_7v] Length = 539 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 108/562 (19%), Positives = 212/562 (37%), Gaps = 78/562 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + +T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + + RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF--------- 464 +G+ I+A +L T I K + + I D Y + + Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTAEDIATIADTYHAWRSTPEELAARIARG 456 Query: 465 -SRMLDYRT-FGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 S++ Y G+ ++ L+ ++ + ++L + ++ ++ K Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNGYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513 Query: 522 MMQQIYPYGWAESFVKESIKSN 543 + +Q+ + +++++++ Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535 >gi|193070116|ref|ZP_03051062.1| type I restriction-modification system, M subunit [Escherichia coli E110019] gi|218561525|ref|YP_002394438.1| type I restriction-modification system methyltransferase subunit; (hsdM-like) [Escherichia coli S88] gi|192956569|gb|EDV87026.1| type I restriction-modification system, M subunit [Escherichia coli E110019] gi|218368294|emb|CAR06112.1| putative type I restriction-modification system methyltransferase subunit; (hsdM-like) [Escherichia coli S88] Length = 539 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 108/524 (20%), Positives = 188/524 (35%), Gaps = 81/524 (15%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + + RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +G+ I+A +L T I K + + I D Y + Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTAEDIATIADTYHA--------------- 441 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R L + L + E + K++ L D Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDND 482 >gi|283477075|emb|CAY72970.1| type I restriction-modification system DNA methylase [Erwinia pyrifoliae DSM 12163] Length = 566 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 100/525 (19%), Positives = 174/525 (33%), Gaps = 97/525 (18%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55 M L + WK A+ L + ++ V+L L+ + A E + + Sbjct: 1 MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLF 60 Query: 56 -------------------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95 +Y +++E + F+ TL S Sbjct: 61 RQVGNADNTYAIPREEYDSEAEYQQAIDQELEVEDYY-AEKNVFWVPKAARWETLKSQAA 119 Query: 96 --TRNNLESYIASFS----------DNAKAIFE--DFDFSSTIARLEK----AGLLYKIC 137 + L DNA E + + R+ +L + Sbjct: 120 LPVGSVLGRDENGKELKLRSVSLLIDNALDKIEQSNGKLKGVLNRIAHYQLGNEVLIGLI 179 Query: 138 KNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 FS ++ ++YE+ + +F + + TP+ +V L Sbjct: 180 NTFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVE 239 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPILVPHG 244 +L +YDP G+GGF + + + +V +G Sbjct: 240 MLQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYG 288 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QE P T + M IR ++ D + TL D R + ++NPPF K Sbjct: 289 QESNPTTWRLAAMNMAIRGIDFDFGT------KNADTLLDDQHPDLRADFVMANPPFNMK 342 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 K R+ G P + + ++ H+ + L G A ++ + S Sbjct: 343 EW-------WSAKLENDVRWQYGTPPQGNANFAWMQHMIHHLAPQ---GSMALLLANGSM 392 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERR 419 N E EIRR L+E DL+E +VALP LF T I +W+L+ K+ R+ Sbjct: 393 SSNTNN---EGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRK 449 Query: 420 GKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 G+V I+A + R R + +I + + + K Sbjct: 450 GEVLFIDARQTGFMKDRVL----RDFTTEDIAKIAATFHAWQTDK 490 >gi|170768502|ref|ZP_02902955.1| type I restriction-modification system, M subunit [Escherichia albertii TW07627] gi|170122606|gb|EDS91537.1| type I restriction-modification system, M subunit [Escherichia albertii TW07627] Length = 539 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 108/524 (20%), Positives = 187/524 (35%), Gaps = 81/524 (15%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + + RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR- 419 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPTK 399 Query: 420 ------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 G+ I+A +L T I K + + I D Y + Sbjct: 400 GYRNRQGETLFIDARNLGTMISRTTK---ELTTEDIATIADTYHA--------------- 441 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R L + L + E + K++ L D Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDND 482 >gi|206577799|ref|YP_002240753.1| type I restriction-modification system, M subunit [Klebsiella pneumoniae 342] gi|206566857|gb|ACI08633.1| type I restriction-modification system, M subunit [Klebsiella pneumoniae 342] Length = 814 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 102/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 + G SF + L + + + I ++ + K + ++ DF Sbjct: 45 YKGDPDGIILIPKGASF-----DDMVALKNDKEIGDKINKIIRKLAEENDLKGVIDEADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMIDRLTKLVGIFEGLDLSSNRADGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRILAKVI------SITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 L GQE++ T A+ M++ + + I QG+TLS + K Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + K RF G+P +G FL+H+ L+ Sbjct: 257 AFDFAVANPPFSNKN----WTSGLDPKKDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR L++ I+ I+ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469 R+G + +I+A+ + +G K R + +I+D++ R +SRM+ Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTVSGYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 LSE 423 >gi|19881239|gb|AAM00849.1|AF486550_5 HsdM [Campylobacter jejuni] Length = 500 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 103/546 (18%), Positives = 193/546 (35%), Gaps = 64/546 (11%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 L + +WK+A+ L + + ++L LR + + + ++ Sbjct: 8 KLEDALWKSADKLRKNIDAAGYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDAD 67 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSS 122 E A F+ + + + + I +D K + Sbjct: 68 EYL---ADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKD 124 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + + L ++ I V+ +++E+ + F + F TP+ Sbjct: 125 NL----DSKCLGELIDLIGNIAF-DTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKC 179 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 VV L +L ++DP CG+GG + V + Sbjct: 180 VVELLVTML-----------EPYKGRVFDPCCGSGGMFVQSEEFVKSH---QGRLDDISI 225 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T+ + + IR++ES ++ + D + + ++NPPF Sbjct: 226 YGQESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFN 280 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + GR+ G+P S+ + ++ H L GG A VL+ Sbjct: 281 DSDWSGE-------LLENDGRWKYGVPPASNANYAWIQHFLYHLSPN---GGVAGFVLAK 330 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 L + E+ IR+ L+E+DLI+ IV LP LF T I LW + +K + K Sbjct: 331 GALTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKT 388 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKV 480 I+A DL T ++ + +N D QI +IY + +NG DY G+ + + + Sbjct: 389 LFIDARDLGT---RINRRNKTLNKDDINQIANIYKAWKNG-----TDYEDIKGFCKSVSI 440 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +S++L L + + ++ ++ E + E I Sbjct: 441 DEIRELSYVLTPGRYVGLADS--------DDEFDFDTRFNELLAKLKSQIKTEQELSEII 492 Query: 541 KSNEAK 546 N K Sbjct: 493 LKNLEK 498 >gi|242243195|ref|ZP_04797640.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis W23144] gi|242233349|gb|EES35661.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus epidermidis W23144] Length = 518 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 186/491 (37%), Gaps = 65/491 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + + ++ Sbjct: 9 QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68 Query: 66 NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114 + E++ + F + S L E I ++ + Sbjct: 69 AWENEAYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + DF A ++ + L+ K+ N + + + ++ + YE+L Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + ++ ++ +YDPTCG+G L Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + +GQE T + ML+ + I TL Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F G++F ++NPP+ KW D ++ E +G L S F+ H+ Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 + L + G A+VL LF G A E IR++L+E + ++A++ LP +LFF T Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + + +K E V I+A+ + GK + + D+ +I++ Y +RE Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNHLTDEDVDKIVETYRNRET 447 Query: 462 GKFSRMLDYRT 472 + Sbjct: 448 IDKFSYVASLD 458 >gi|153805904|ref|ZP_01958572.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185] gi|149130581|gb|EDM21787.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185] Length = 508 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 115/530 (21%), Positives = 199/530 (37%), Gaps = 74/530 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 +L NF+++ L G +F I P +R+ + E+ S D Sbjct: 25 QNLYNFLFEACNILRGPVSQDNFKDYITPILYFKRISDVYDEETQTALEE------SGGD 78 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--------DNAKAIFEDFDF 120 E + F S + + NL + I D + F Sbjct: 79 EEYASLPEQHRFVIPDGCHWSDIRERS--ENLGAAIVGAMRGIELANPDTLYGVLSMFSA 136 Query: 121 SSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + + + ++ S L + P +M + YE L+++F + A +F T Sbjct: 137 QKWTDKKNLSDGKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGEFYT 196 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR VV L +L P T+YDP CG+GG L +A+ H+ +H Sbjct: 197 PRSVVSLLVRIL----------DPKPGETVYDPACGSGGMLIEAVQHM-----NHSSLCC 241 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYC 295 GQE A+ + + NI QG TL +F Sbjct: 242 GSIFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRSPKILQNGEIAKFDCV 294 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF + E + + GR G P S G ++ H+ + +G GR Sbjct: 295 IANPPFSL-----EKWGSVEWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASGNGR 346 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A+V+ LF G E IR L+++DL+EA+V L LF+ T ++ IL K Sbjct: 347 MAVVMPQGVLFRGNE---EGRIREKLVKSDLVEAVVTLGDKLFYGTPLSPCFLILRRLKP 403 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML------ 468 +V +I+ T + T R + I++ + ++ ++Y + E+ + FS+++ Sbjct: 404 AAHSARVLMIDGTKILTVKRA----QNILSPEDVNRLYELYTNYEDVEDFSKVVTLDDIA 459 Query: 469 -------DYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPL 510 + Y + ++ RP K + + +RKL L Sbjct: 460 AKDYDLSPNKYVEYHKEEI-RPYAEVLAEFKAAYEEVKRFEGEFRKLINL 508 >gi|89900159|ref|YP_522630.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] gi|89344896|gb|ABD69099.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] Length = 697 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 181/719 (25%), Positives = 287/719 (39%), Gaps = 103/719 (14%) Query: 10 SLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 A IW A+ L G K +++ ++PF L LE L + +Y G+ D Sbjct: 11 EYAGKIWDTADTLRGAGIKESEWPTYMMPFFALMMLESRLRRFKQERIAEYEEETGAAFD 70 Query: 69 LESFVKVA---------GYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKA 113 E G ++ L T N N L S++ S+ + K Sbjct: 71 PEDATHAKWLDDTAKAVGKGYHKDLLLHDKGLRETCLVPGGNFLNRLLSHLNSYDPDTKK 130 Query: 114 IFE--------DF-DFSSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + F D + L LY + ++ I+L P + ++ I EH+ Sbjct: 131 LLGIDYAQGSAKFLDMQGKASDLNARDNNPLYPFAQKWASIDLTP--FDNSEITTIEEHI 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 R++ +E A + TP DV+ LATA++ K G+ +YD CG G FL Sbjct: 189 KRKWADISAETAGEQYTPSDVIDLATAII-IELRREGKGGTGIAD-VYDMACGGGNFLFA 246 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + D + GQEL A+ + R I+ G+TL Sbjct: 247 TEDALRDAFPKLSVRTR----GQELNDPLFALA---------SIEARFREDAQIEWGNTL 293 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMH 341 + DLF +F ++NPP+G W+ K ++ + GRF +P SDG +LFL H Sbjct: 294 TNDLFLLDKFDAIVANPPYGVDWKDFKQSLGMDA----SGRFAKDRMPPTSDGQLLFLQH 349 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 A L G AAIV S S LF+G AG GESE RRWL++ D++EAI+ LP + FF Sbjct: 350 AAFHLSEV----GVAAIVHSGSTLFSGDAGGGESETRRWLIQQQDIVEAIIQLPKNEFFN 405 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-QRRQILDIYVSR 459 T I+TYLWIL+ K + R+GKV LINA D + ++ K+ D+ I+ + + Sbjct: 406 TGISTYLWILNRAKPQARKGKVLLINAEDQFVKLKKNLNKKNCKIDEANCAAIVKAFRAC 465 Query: 460 ENGKFSRMLDYRTFGYRRIKVL--------RPLRMSFILDKTGLA-RLEADITWRKLSPL 510 ++G S++L Y +++++ R ++ L+ + + K PL Sbjct: 466 KDGPISKVLTVDQLLYNKVEIILHRHDAEGRAIQEETALNGEVITVTIGGQSHIIKNGPL 525 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK-----SNEAKTLKVKASKSFIVAFINAFG 565 + L + AE+ +S K NE +++ + + Sbjct: 526 IKPDHLTTKEAAAAFNEAIKAAETLTVQSGKLTYTRDNETGAIRLDDGTTLSELGLGVLA 585 Query: 566 RKDPRAD----PVTDVNGEWIPDTNLTEYENVPYLES-------IQDYFVREVS-PH--V 611 K A V V P + E + I+D+ V P V Sbjct: 586 VKAKVAKARGAEVLKVEVTLGPLKE-KDTETTAFSFDPAGNDAIIRDFLATWVKEPFERV 644 Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV-----EAQIA 665 PDA VG EINFN+ F + ++D+ +L + E + Sbjct: 645 PDA--------------VTVGCEINFNKQFPKKSEVGTVKDLLEKLHRLNAKGAEQEAD 689 >gi|328676367|gb|AEB27237.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Francisella cf. novicida Fx1] Length = 443 Score = 306 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 166/469 (35%), Gaps = 56/469 (11%) Query: 1 MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + + + +WK A+ L + ++ V+L L+ + + E + + + Sbjct: 1 MVKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAEL--QS 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112 + E F+ ++ S L + + I +++ K Sbjct: 59 EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171 + + + L ++ I + + V+ +++E+ + F Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP+ VV L +L ++DP CG+GG + V Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T +C + IR ++S + S+ + D + Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF + R+ G P + + ++ H L Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPAGNANYAWIQHFLYHLAPT-- 323 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A VL+ L + SGE +IR+ L+E +L++ IV LP LF T I LW + Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI- 378 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 K + + I+A + I K +DD +I Y + + Sbjct: 379 --KRGRKTKDILFIDARNKGHLINRRTK---EFSDDDITEIAQTYHNWK 422 >gi|331681327|ref|ZP_08381964.1| putative type I restriction-modification system, M subunit [Escherichia coli H299] gi|331081548|gb|EGI52709.1| putative type I restriction-modification system, M subunit [Escherichia coli H299] Length = 539 Score = 306 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 107/562 (19%), Positives = 208/562 (37%), Gaps = 78/562 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + +T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + + RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF--------- 464 +G+ I+A +L T I K + + I D Y + + Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTTEDIATIADTYHAWRSTPEELAARIARG 456 Query: 465 -SRMLDYRT-FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 S++ Y G+ ++ + ++L + ++ ++ K Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513 Query: 522 MMQQIYPYGWAESFVKESIKSN 543 + +Q+ + +++++++ Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535 >gi|259907263|ref|YP_002647619.1| Type I restriction modification DNA modification domain protein [Erwinia pyrifoliae Ep1/96] gi|224962885|emb|CAX54366.1| Type I restriction modification DNA modification domain protein [Erwinia pyrifoliae Ep1/96] Length = 568 Score = 306 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 100/525 (19%), Positives = 174/525 (33%), Gaps = 97/525 (18%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55 M L + WK A+ L + ++ V+L L+ + A E + + Sbjct: 1 MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLF 60 Query: 56 -------------------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95 +Y +++E + F+ TL S Sbjct: 61 RQVGNADNTYAIPREEYDSEAEYQQAIDQELEVEDYY-AEKNVFWVPKAARWETLKSQAA 119 Query: 96 --TRNNLESYIASFS----------DNAKAIFE--DFDFSSTIARLEK----AGLLYKIC 137 + L DNA E + + R+ +L + Sbjct: 120 LPVGSVLGRDENGKELKLRSVSLLIDNALDKIEQSNGKLKGVLNRIAHYQLGNEVLIGLI 179 Query: 138 KNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 FS ++ ++YE+ + +F + + TP+ +V L Sbjct: 180 NTFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVE 239 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPILVPHG 244 +L +YDP G+GGF + + + +V +G Sbjct: 240 MLQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYG 288 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QE P T + M IR ++ D + TL D R + ++NPPF K Sbjct: 289 QESNPTTWRLAAMNMAIRGIDFDFGT------KNADTLLDDQHPDLRADFVMANPPFNMK 342 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 K R+ G P + + ++ H+ + L G A ++ + S Sbjct: 343 EW-------WSAKLENDVRWQYGTPPQGNANFAWMQHMIHHLAPQ---GSMALLLANGSM 392 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERR 419 N E EIRR L+E DL+E +VALP LF T I +W+L+ K+ R+ Sbjct: 393 SSNTNN---EGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRK 449 Query: 420 GKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 G+V I+A + R R + +I + + + K Sbjct: 450 GEVLFIDARQTGFMKDRVL----RDFTTEDIAKIAATFHAWQTDK 490 >gi|323935282|gb|EGB31635.1| N-6 DNA methylase [Escherichia coli E1520] Length = 539 Score = 306 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 108/562 (19%), Positives = 208/562 (37%), Gaps = 78/562 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + +T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + E RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTEDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF--------- 464 +G+ I+A +L T I K + + I D Y + + Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTAEDIATIADTYHAWRSTPEELAARIARG 456 Query: 465 -SRMLDYRT-FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 S++ Y G+ ++ + ++L + ++ ++ K Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513 Query: 522 MMQQIYPYGWAESFVKESIKSN 543 + +Q+ + +++++++ Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535 >gi|329919647|ref|ZP_08276625.1| putative type I restriction-modification system, M subunit [Lactobacillus iners SPIN 1401G] gi|328937299|gb|EGG33723.1| putative type I restriction-modification system, M subunit [Lactobacillus iners SPIN 1401G] Length = 502 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 95/540 (17%), Positives = 200/540 (37%), Gaps = 60/540 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + +W A LWG ++ +VI+ LR + A + + + Sbjct: 1 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + F+ E T+ +N I + + K Sbjct: 59 ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S +A+ +L + F+ I++ + ++ YE+ I +F + + Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YD CG+GG + + Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR +++D + T + DL + Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + K + R+ G P + + ++ H+ + L Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L + GE EIR+ ++E+DLIE I+++P++LF+ ++ LW ++ Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISMPSNLFYSVTLSVTLWFITK 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K ++ + I+A + + R +++ +++ + +NG Sbjct: 380 GKKQKGKT--LFIDARHMGHMVDQS---HRDFSEEDIQKLATTFEKFQNG-----TLENV 429 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + +IL +E + + L M ++ + Sbjct: 430 KGFCYVATTEDIAKQDYILTPGRYVGIEDQEDDGEPFDEKMTRLTSELSEMFKKSHKLED 489 >gi|116255297|ref|YP_771130.1| putative type I restriction enzyme [Rhizobium leguminosarum bv. viciae 3841] gi|115259945|emb|CAK03042.1| putative type I restriction enzyme [Rhizobium leguminosarum bv. viciae 3841] Length = 519 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 99/475 (20%), Positives = 183/475 (38%), Gaps = 63/475 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + ++K A+ L G+ + +++ V L L+ + A E + + Sbjct: 1 MAKDNNGDLGFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEGLHARLTA--D 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------SDNA 111 + + E A F+ +E L + R + I ++ Sbjct: 59 EYADAEDPEEYL---AENVFWVPTEARWPFLQANAKRPEIGKLIDEAMEAIERFPSNEGL 115 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170 K + T+ + +L ++ FS I LH ++ +YE+ + F Sbjct: 116 KGVLPKNYARPTLNK----TMLGELIDLFSNIGLHDSKDTAKDLLGRVYEYFLSGFAGSE 171 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TPR VV +L +YDP CG+GG + N + + Sbjct: 172 GKRGGEFFTPRSVVRTLVEML-----------EPYKGRVYDPCCGSGGMFVQSENFIEEH 220 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFT 288 G + +GQE+ T + + ++ +++D I+ + + +D Sbjct: 221 GGRRN---DIAVYGQEINHTTWRLAKMNLAVQGIDAD--------IRWNNEGSFHRDELP 269 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + + L+NPPF + + E R+ G P + + +L H+ + L Sbjct: 270 DLKADFILANPPFNISDWGGE-------RLAEDTRWKFGKPPNGNANFGWLQHIIHHLAP 322 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G A +VL++ + SGE EIR+ ++E D ++ +VALP LF+ T I LW Sbjct: 323 R----GTAGVVLANGSM--SSQQSGEGEIRKAMIERDQVDCMVALPGQLFYSTQIPACLW 376 Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 IL+ K+ +RRG++ I+A L + RR D +I Y Sbjct: 377 ILARDKSANGHRDRRGEILFIDARKLGFMVDRV---RREFTADDIEKITGAYHRW 428 >gi|227356295|ref|ZP_03840683.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus mirabilis ATCC 29906] gi|227163405|gb|EEI48326.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus mirabilis ATCC 29906] Length = 534 Score = 306 bits (784), Expect = 9e-81, Method: Composition-based stats. Identities = 110/581 (18%), Positives = 207/581 (35%), Gaps = 75/581 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + +W A L G + +++ V+L L+ + E RS + + Sbjct: 4 SPAKKTTKGFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRSQLIK---N 60 Query: 62 FGGSNIDLESFVKVAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDNAKAI 114 + +D++ F + F+ S +S + +++ I + + Sbjct: 61 GQEAFVDMDVFYQQ-DNVFFLPQVSRWSYVQERAKQDDIAVIIDTALSTIEKSNASLTGA 119 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 D FS +K L +N + + + ++ +YE+ + RF + +G Sbjct: 120 LPDNYFSRQGLEPKKLASLIDSIENINTLATECGVGEEDLVGRVYEYFLGRFAASEGKGG 179 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ VV L +L +YDP CG+GG ++ V Sbjct: 180 GEFYTPKSVVTLLAEML-----------EPYQGKVYDPCCGSGGMFVQSLKFVESH---Q 225 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + +GQEL T+ + + +R L + + T D + + Sbjct: 226 GKSKDIAIYGQELTSTTYKLAKMNLAVRGLTGNLGE------RPADTFFADQHPDLKADF 279 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF E + RF G P + + +++H+ +KL G Sbjct: 280 IMANPPFNL------KDWRNEAELTNDPRFAGFRTPPTGNANYAWILHMLSKLSEDGVAG 333 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 A + S N SGE EIR+ L+E+D IE ++ALP LFF T I LW +S Sbjct: 334 FVLA---NGSMSSN---TSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFISKS 387 Query: 414 KTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 K +R+G+ I+A L T I ++ + + I D + + + Sbjct: 388 KQASAKYGYRDRQGETLFIDARHLGTMISRT---QKELTAEDIATIADTFHAWRSS---- 440 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD-ILKPMMQQ 525 L+ + G+ + + + K++ L D +L P Sbjct: 441 --------------ESELKRRIATKEIGIEQYQDQAGFCKVATLDDIKANDFVLTPGRYV 486 Query: 526 IYPYGWAESFVKESIKSNEAKTL--KVKASKSFIVAFINAF 564 + E+ +TL ++ + A Sbjct: 487 GAAEVKDDGVAFETKMQELTQTLYRQMNEAAELDKAIRKNM 527 >gi|294794794|ref|ZP_06759929.1| type I restriction-modification system, M subunit [Veillonella sp. 3_1_44] gi|294454156|gb|EFG22530.1| type I restriction-modification system, M subunit [Veillonella sp. 3_1_44] Length = 510 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 107/548 (19%), Positives = 199/548 (36%), Gaps = 68/548 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + IW A LWG ++ KVI+ LR + A E + ++ Sbjct: 1 MAAKNNTDIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFERRYEELIKE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + F+ E ST+ S +N I + K Sbjct: 59 ---GDGFENDRDAYAEENIFFVPEEARWSTIASAAHTPEIGLVIDNAMRAIEKENTTLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L ++ F + +++ ++ YE+ I +F S Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGT 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YDP CG+GG + V Sbjct: 172 KGGEFYTPSSIVKTIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR ++++ + T DL + Sbjct: 222 NRG---TISVYGQESNADTWKMAKMNMAIRGIDANFGPYQA------DTFFNDLHKTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF + K + R+ GLP + + ++ H+ + L Sbjct: 273 DFIMANPPFNLSNWGQE-------KLKDDVRWKYGLPPAGNANYAWIQHMIHHLGP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L SGE EIRR ++E+DLIE IVALPT LF+ I LW ++ Sbjct: 322 NGKIGLVLANGAL--SSQSSGEGEIRRRIIEDDLIEGIVALPTQLFYSVTIPVTLWFITK 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKF 464 K +++GK I+A + + K R + ++ + ++G Sbjct: 380 CK--KQKGKTLFIDARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLVKTFEEFQSG-- 432 Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + G+ I + + ++L +E + + L M Sbjct: 433 ---MLVEKKGFSAIATIEDIAKQDYLLTPGRYVGIEEQEGDGEPFEEKMTRLTSELSDMF 489 Query: 524 QQIYPYGW 531 ++ + Sbjct: 490 EKSHKLED 497 >gi|255011914|ref|ZP_05284040.1| N-6 DNA methylase [Bacteroides fragilis 3_1_12] gi|313149748|ref|ZP_07811941.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138515|gb|EFR55875.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 497 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 106/492 (21%), Positives = 186/492 (37%), Gaps = 66/492 (13%) Query: 1 MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + T + A L NF+++ + G +F I P +R+ + Sbjct: 1 MAKKTITKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108 A S D E + F + NL + I Sbjct: 59 ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112 Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 D + F + L + + + ++ S +L P +M + YE L+++ Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRKLGNKDYPADLMGDAYEILLKK 171 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + A +F TPR VV L +L P T+YDP CG+GG L +A+ Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPKPGETVYDPACGSGGMLIEAIR 221 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 ++ D GQE A+ + + N+ QG TL Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269 Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +F ++NPPF + ++K R G P S G ++ H Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATGWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + + +G GR A+V+ LF G E+EIR+ L+E+DLIEA+V L LF+ T Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESDLIEAVVTLGDKLFYGT 378 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460 ++ I+ K G++ +I+ + + T R + I+ ++ ++ +Y + + Sbjct: 379 GLSPCFLIIRRMKPAHHSGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 434 Query: 461 NGKFSRMLDYRT 472 +SR++ + Sbjct: 435 EEDYSRIVTLQE 446 >gi|304560217|gb|ADM42881.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Edwardsiella tarda FL6-60] Length = 812 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 103/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF + L + + + I ++ + K + ++ DF Sbjct: 45 YKGDPYGMIVVPKGASF-----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMIDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 L GQE++ T A+ M++ + + I QG+TLS + K Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEADGRLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + K RF G+P +G FL+H+ L+ Sbjct: 257 AFDFAVANPPFSNKNWTSGLDL----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR L++ I+ I+ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLVKQGYIKGIIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469 R+G + +I+A+ + +G K R + +I+D++ R +SRM+ Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTLPGYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 LSD 423 >gi|238918945|ref|YP_002932459.1| hypothetical protein NT01EI_1012 [Edwardsiella ictaluri 93-146] gi|238868513|gb|ACR68224.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 539 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 101/508 (19%), Positives = 189/508 (37%), Gaps = 66/508 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + + +D++ F + Sbjct: 22 LWDTANQLRGSVESSEYKHVVLSLVFLKFITDKFEAKRKQLMA---NGQEAFVDMDVFYQ 78 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 F+ S + + ++++ + I + D FS + Sbjct: 79 Q-DNVFFLPEAARWSYVKARAKQDDIAVIIDSALATIEKSNSALTGALPDNYFSRQGLEV 137 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 +K L +N + + ++ +YE+ + RF + +G +F TP+ VV L Sbjct: 138 KKLASLIDTIENIDTLASECQLSEEDLVGRVYEYFLGRFAASEGKGGGEFYTPKSVVTLL 197 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 +L +YDP CG+GG ++ V + +GQEL Sbjct: 198 AEML-----------EPYEGKIYDPCCGSGGMFVQSLKFVESH---QGKSKDIAIYGQEL 243 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + + IR L + + T D + + ++NPPF Sbjct: 244 TTTTYKLAKMNLAIRGLIGNLGE------RPADTFFADQHPDLKADFIMANPPFNL---- 293 Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 E + RF G P + + +++H+ KL + G A VL++ + Sbjct: 294 --KEWRSESELTNDPRFAGFRTPPTGNANYAWILHMLAKLSVD----GTAGFVLANGAMS 347 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR------- 419 + SGE EIR+ L+E+D IE ++ALP LF+ T I LW +S K R Sbjct: 348 SN--TSGEGEIRQKLIEDDRIECMIALPGQLFYTTQIPVCLWFISKSKQANPRYGYRARS 405 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----------ENGKFSRML 468 G+ I+A +L T + + + +I D + + + G+ S Sbjct: 406 GETLFIDARELGTMVSRT---NKELTAADIARIADTFHAWRCSESELKRRVKAGEISISE 462 Query: 469 DYRTFGYRRI-KVLRPLRMSFILDKTGL 495 G+ ++ + F+L Sbjct: 463 YQDHAGFCKVATLDEIKANDFVLTPGRY 490 >gi|110639723|ref|YP_679933.1| type I restriction-modification system, M subunit [Cytophaga hutchinsonii ATCC 33406] gi|110282404|gb|ABG60590.1| type I restriction-modification system, M subunit [Cytophaga hutchinsonii ATCC 33406] Length = 528 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 104/568 (18%), Positives = 212/568 (37%), Gaps = 84/568 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTR 52 M+E L +W A L G +F IL F + L L+ + Sbjct: 1 MSEDQKRI--LEQQLWNIANTLRGKMNADEFRDYILGFIFYKYLSEKMEIFANDILKQDK 58 Query: 53 -----------------SAVREKYLAFGGSNIDLESF--VKVAGYSFYNTSEYSLSTLGS 93 A+RE+ L G + E N + + Sbjct: 59 ISFREITPKLKQGKEYLEAIREEALEKLGYFLKPEELFSEVAKRGRGSNDEGENFDEAKT 118 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFS 141 +L+ + + + + DF + ++ + ++ K+ + Sbjct: 119 NFILEDLQKILINIQLSTMGTDSEEDFDNLFEDMDLNSTKLGKTPDARNAIIAKVLTHLD 178 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 I+ + + V+ + YE+LI +F S + A +F TP+ V + ++ Sbjct: 179 KIDFKLEDLESDVLGDSYEYLIGQFASGAGKKAGEFYTPQQVSKILAKIVTTEKH----- 233 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 ++++YDPTCG+G L V D +GQE+ T+ + M++ Sbjct: 234 ---KLKSVYDPTCGSGSLLLRVAREVKDVAK---------FYGQEMNRTTYNLARMNMIL 281 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + +I+Q TL G++F ++NPPF +W + + + + Sbjct: 282 HGVH-----YRKFDIKQEDTLEHPQHMGQQFEAIVANPPFSAQWSANPLHLSDDRFSQY- 335 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 L S F+ H+ + L G A+VL LF G A E IR++L Sbjct: 336 ----GKLAPASKADYAFVQHMVHHLAE----NGIMALVLPHGVLFRGGA---EQHIRKYL 384 Query: 382 LE-NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 +E + ++A++ LP ++F+ T+I T + ++ +K E + I+A+ + ++ Sbjct: 385 IEQKNYLDAVIGLPGNIFYGTSIPTCILVI--KKCREMPDNILFIDASKEFEKVKT---- 438 Query: 441 RRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 + I+ + +I+D Y SR+ + +S + + P R ++ ++ Sbjct: 439 QNILREKHIDKIVDTYRSRKEIEKYSHCASLKEIAENDFNLNIP-RYVDTFEEEEEIDIQ 497 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIY 527 A + K ++ + M+++ Sbjct: 498 AVMAEIKNLEAKRTDLDKQIDVYMKELG 525 >gi|2408224|gb|AAB70709.1| HsdM [Klebsiella pneumoniae] Length = 539 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 116/577 (20%), Positives = 209/577 (36%), Gaps = 84/577 (14%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 + +W A L G + +++ V+L L+ + E R + ++ G +++E Sbjct: 16 EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMEDE---GQGDFLEMEV 72 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124 F + FY E S + ++++ S I + K D FS Sbjct: 73 FYQQ-DNIFYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + L + IE + ++ +YE+ + +F + +G +F Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP+ VV L T +L +YDP CG+ G ++ V Sbjct: 189 TPKCVVTLLTEML-----------EPFEGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +GQEL T+ + + IR L ++ + T D + Y L+N Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPF + + + RF G P + + +++H+ +KL + G A Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 VL++ + SGE EIR ++ENDLI+ ++ALP LFF T I LW ++ K + Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396 Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 +G+ I+A +L T I K + D I D Y + Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMINRTIK---ELTADDIAIIADTYHA------------ 441 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 R L + LA+ E + K++ + + D + + + Sbjct: 442 -----WRSTPEE-LVERVKRGDSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGAAE 495 Query: 531 WAESFVKESIKSNEAKT---LKVKASKSFIVAFINAF 564 + V K E ++K ++ A Sbjct: 496 QEDDGVAFETKMRELSQTLFAQMKQAEELDKAIRQNL 532 >gi|308272900|emb|CBX29504.1| Putative type I restriction enzyme HindVIIP M protein [uncultured Desulfobacterium sp.] Length = 516 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 99/556 (17%), Positives = 197/556 (35%), Gaps = 58/556 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +WK A+ L + ++ ++L LR + A E + ++ + Sbjct: 6 KNNIKEEPIEKQLWKAADKLRKNIDAAEYKHIVLGLMFLRYISDAFEDLYNKLKNGDGEY 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIF 115 G++ + + K F+ + + L + + I + + K + Sbjct: 66 AGADPEDKDEYKAE-NVFFVPEKARWAYLLAKAKLPEIGKVVDEAMDAIEKDNPSLKDVL 124 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 S + L + I + ++ +++E+ + F + Sbjct: 125 PKVFARSNL----DPTNLGGLIDLVGNIAMGAAKARSADILGHVFEYFLGEFALAEGKKG 180 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TPR VV L +L ++DP CG+GG + VAD Sbjct: 181 GQFYTPRSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVADH---Q 226 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + +GQE T + + IR ++S + ++ + D + Y Sbjct: 227 GKVSDISIYGQESNHTTWRLARMNLAIRGIDSSQVKWNNEG-----SFLNDSHKDLKADY 281 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF + + GR+ G+P + + ++ H L G Sbjct: 282 VIANPPFNDSDWSGEI-------LKKDGRWKYGIPPSGNANYAWIQHFLYHLSPS----G 330 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR- 413 +A VL+ L + SGE +IR+ L+E+ +++ IV LP LF T I LW LS Sbjct: 331 QAGFVLAKGSLTS--KTSGEGDIRKALIEDRMVDCIVNLPAKLFLNTQIPASLWFLSRNR 388 Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 K R ++ I+A ++ I + R ++ + I Y + N D Sbjct: 389 ANGKFRNRTNEIFFIDARNMGYLINR---RTRELSAEDINTISGTYHNWRNPDG-NYEDV 444 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 + F + R + ++L L + + + +Q+ Sbjct: 445 KGFC-NSASIERVKELDYVLTPGRYVGL----PDDEDDFDFNERFSKLKSEFEEQLKEEE 499 Query: 531 WAESFVKESIKSNEAK 546 + +K+++K E K Sbjct: 500 RLNALIKDNLKKIEIK 515 >gi|228475400|ref|ZP_04060119.1| type I restriction-modification system, M subunit [Staphylococcus hominis SK119] gi|228270583|gb|EEK12015.1| type I restriction-modification system, M subunit [Staphylococcus hominis SK119] Length = 518 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 113/550 (20%), Positives = 204/550 (37%), Gaps = 78/550 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A+DL G+ +F IL R L +E + + + Sbjct: 9 QQQAELQKNLWSIADDLRGNMDANEFKNYILGMIFYRFLSEKIEEQAQILLAEDNIDYET 68 Query: 66 NIDLESFVKVAGYSF-----YNTSE-YSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114 + E + V F Y Y L + E + S+ K I Sbjct: 69 AMADEDYRPVLEQEFISRIGYVIEPQYLFGHLVKKIEKQAFE--MEDLSNAIKNIENSTR 126 Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158 F+D D +S +RL + L+ K+ S + + ++ + Sbjct: 127 GHDSEDDFIHLFDDLDLNS--SRLGNSNAARTKLISKVMMKISTLPFVHSDMEIDMLGDA 184 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ V + ++ I+++YDPTCG+G Sbjct: 185 YEYLIGQFAASSGKKAGEFYTPQQVSTILAKIVTVNKKD--------IKSVYDPTCGSGS 236 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + +GQE T+ + ML+ + + I+ Sbjct: 237 LLLRVG----------REANVRQYYGQEYNSTTYNLARMNMLLHDVN-----YANFKIEN 281 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSM 336 G T+ + +RF ++NPP+ KW D +E RF L S Sbjct: 282 GDTIEDPAISDERFEAVVANPPYSAKWSSDPQFLE-------DPRFSNYGKLAPKSKADF 334 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPT 395 F+ H+ L + G A+VL LF G A E IR +L+ E + ++A++ LP Sbjct: 335 AFIQHMIYHL----DDNGTMAVVLPHGVLFRGAA---EGVIREYLIKEKNYLDAVIGLPA 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+I T + + +K E V I+A+ + GK + + + +I++ Sbjct: 388 NLFFGTSIPTSILVF--KKCREDDDNVLFIDASQSFEK----GKNQNHLTTEDVEKIVET 441 Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 Y +RE K+S + P + ++ + + ++ Sbjct: 442 YKNRETLDKYSYAASLEEIAENDYNLNIPRYVDTFEEEEPIDLEQVQKDLNQIDDEIIEV 501 Query: 515 WLDILKPMMQ 524 +I + + Sbjct: 502 EQEINNYLKE 511 >gi|254037298|ref|ZP_04871375.1| type I restriction-modification system [Escherichia sp. 1_1_43] gi|226840404|gb|EEH72406.1| type I restriction-modification system [Escherichia sp. 1_1_43] Length = 534 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 100/518 (19%), Positives = 197/518 (38%), Gaps = 72/518 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + + + +D++ F + Sbjct: 17 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRKQLID---NGQEAFVDMDVFYQ 73 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 F+ + S + + ++++ S I + + D FS + Sbjct: 74 Q-DNVFFLPPDARWSYVKARAKQDDIAVIIDTALSTIEKRNASLTGALPDNYFSRQGLEV 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 ++ L +N + + + ++ +YE+ + +F + +G +F TP+ VV L Sbjct: 133 KRLASLIDSIENIDTLANECELTEEDLVGRVYEYFLGKFAASEGKGGGEFYTPKAVVTLL 192 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 +L +YDP CG+GG ++ V + +GQEL Sbjct: 193 AEML-----------EPYQGKIYDPCCGSGGMFVQSLKFVESH---QGKSKDIAIYGQEL 238 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + + +R L + + T D + + ++NPPF K Sbjct: 239 TSTTYKLAKMNLAVRGLSGNLGE------RPADTFFADQHPDLKADFIMANPPFNLKN-- 290 Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 E + RF G P + + +++H+ +KL G A + S Sbjct: 291 ----WRNEAELTNDPRFAGFRTPPTGNANYAWILHMLSKLSEDGTAGFVLA---NGSMSS 343 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERR 419 N SGE EIR+ L+E+D IE ++ALP LFF T I +W +S K +RR Sbjct: 344 N---TSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCMWFISKSKKANPQYGYRDRR 400 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 G+ I+A +L T + ++ + + I D + + + Sbjct: 401 GETLFIDARNLGTMVSRT---QKELTKEDIATIADTFHAWRSS----------------- 440 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 L+ ++ + + + + K++ L + D Sbjct: 441 -ESELKRRIEANEISVEQYQDQAGFCKVATLDEIKDND 477 >gi|163801599|ref|ZP_02195497.1| type I restriction-modification system methyltransferase subunit [Vibrio sp. AND4] gi|159174516|gb|EDP59318.1| type I restriction-modification system methyltransferase subunit [Vibrio sp. AND4] Length = 504 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 189/463 (40%), Gaps = 54/463 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +W AE L G +D+ + + P +RL + E + Sbjct: 2 NKNKLEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLSDVYLEEYNEALELHEG----- 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + F E S + +T + +++ I + ++ +F D ++ Sbjct: 57 -DAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQWT 115 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + ++FS I L +V + YE+LI++F + A +F T R Sbjct: 116 NK-ERLPDH-LLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 173 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL- 240 VVHL T ++ + YDPTCGTGG L +A+ + G Sbjct: 174 TVVHLMTRIM----------KLKPGESAYDPTCGTGGMLLNAVMDLRAQGEESSTNGQQW 223 Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293 +GQE+ T A+ M + +E ++ +G TL + F K+F Sbjct: 224 RGVHLYGQEVNLLTSAIARMNMFLHDIE-------EFDVMRGDTLGEPKFIENDQLKQFD 276 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPP+ K ++ GR G+P F H+ L+ Sbjct: 277 VIFANPPYSIK-----KWNREKFAADPYGRNMYGVPPQGCADYGFYTHIIKSLKPDT--- 328 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRAA++ LF E IR+ ++E+D+IEA+V L +LF+ + + + + +L+ Sbjct: 329 GRAAMLWPHGVLFR----DSEQAIRKQVIESDIIEAVVGLGPNLFYNSPMESCVVVLNCN 384 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 K ER+ K+ IN + T R ++DD + + Y Sbjct: 385 KPVERKNKILFINGIEHVTRERA----HSRLSDDDLDVLCEAY 423 >gi|332308206|ref|YP_004436057.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175535|gb|AEE24789.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola agarilytica 4H-3-7+YE-5] Length = 535 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 183/476 (38%), Gaps = 73/476 (15%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R ++ E+ G S+ + Sbjct: 17 LWDTANKLRGSVESSEYKHVVLSLIFLKFISDKFEAQRKSLVEQ----GMSDYVEQIEFY 72 Query: 75 VAGYSFYNTSEYSLSTL----GSTNTRNNLESYI---ASFSDNAKAIFEDFDFSSTIARL 127 F+ + S + + +++ + + + K D FS L Sbjct: 73 AKDNVFFLPEQARWSYIQQQMKQDDIAVKIDTALHTVEKNNPSLKGALPDNYFSRLG--L 130 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------------DRVMSNIYEHLIRRFGSEVSEGAE 175 + L + + I+ + + ++ +YE+ + +F + +G Sbjct: 131 VSSK-LASLIDTINNIDTYTSKSSANECGSDDIKSEEDLVGRVYEYFLGKFAASEGKGGG 189 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP+ +V L ++ +YDP CG+GG ++ + + K Sbjct: 190 EFYTPKSIVSLIAEMI-----------EPYKGKIYDPCCGSGGMFVQSLKFIDSHKGNKK 238 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + +GQE T+ + + +R + ++ G T KD + + Sbjct: 239 ---DISIYGQEYTNTTYKLAKMNLAVRGISANLGEVA------GDTFFKDQHPDLKADFI 289 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF + E++ + R+ G +P + + ++MH+ +KL G Sbjct: 290 MANPPFN------QKQWRGENELVDDPRWSGFDVPPTGNANYAWIMHMISKLSEHGTAGF 343 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 A + S N SGE EIR+ ++E DL++ ++ALP LF+ T I LW +S K Sbjct: 344 VLA---NGSMSSN---TSGEGEIRKKIIEKDLVDCMIALPGQLFYTTQIPVCLWFISKNK 397 Query: 415 TE-----------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 R+G+ I+A ++ + + + + D I Y + Sbjct: 398 KAVDASEDFAKRRNRQGETLFIDAREMGSMVSRV---NKELTTDDIAHIAQTYHAW 450 >gi|322411067|gb|EFY01975.1| type I restriction-modification system M protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 531 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 108/494 (21%), Positives = 191/494 (38%), Gaps = 76/494 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58 MT+ S + L +W +A+ L +D+ +L + L L ++ Sbjct: 1 MTDTNNSRS-LYQALWNSADILRSKMDASDYKSYLLGLIFYKYLSDKLLLAVCDNLDEPF 59 Query: 59 ----------YLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS---------TNTRN 98 F ++ + + Y + S L S Sbjct: 60 VSFSQAQALYQENFSDEDVHDDLVEVLMDELGYVIEPGLTFSFLVSEIYEGRFQLEALAQ 119 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 I ++ + +FED D S +L ++ + + K + ++L Sbjct: 120 AFRD-IEQSNEAFENLFEDIDLYSK--KLGATPQKQNTTVSDVMKELNTLDLTVHAGD-- 174 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ + YE+LI +F S+ + A +F TP+ V HL T ++ + TLYDPT Sbjct: 175 ILGDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVFVGRED------KKGMTLYDPT 228 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L +A + + GQE+ T+ + M++ + + + Sbjct: 229 MGSGSLLLNAKRY-------SNQASTVSYFGQEVITSTYNLARMNMMLHGVPIE-----N 276 Query: 274 KNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 ++++ G TL D F L NPP+ KW ++ RF L Sbjct: 277 QHLRNGDTLDADWPTTEPTDFDGVLMNPPYSMKWSGAAGFLQ-------DPRFSAFGVLA 329 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ Sbjct: 330 PKSKADFAFLLHGYYHLKHS----GVMAIVLPHGVLFRGAA---EKKIRQHLLEEGAIDT 382 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP+++F+ T+I T + IL +T + V I+A+ + +N + + D Sbjct: 383 VIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFIKNKN----QNNMTDAHI 435 Query: 450 RQILDIYVSRENGK 463 +IL Y +RE+ Sbjct: 436 EKILKTYEAREDVD 449 >gi|227893571|ref|ZP_04011376.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus ultunensis DSM 16047] gi|227864623|gb|EEJ72044.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus ultunensis DSM 16047] Length = 565 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 116/508 (22%), Positives = 202/508 (39%), Gaps = 77/508 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M T + L+N ++ A+ L ++ +L + L L V E Sbjct: 21 MANNT-TKTELSNALFSAADALRSKMDANEYKNYLLGIVFYKYLSDKLLYHVGEVLENNP 79 Query: 58 -----KYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGST---------------- 94 + Y SF +++ + + + Sbjct: 80 NLSLDQAQKLYEDQYRDPDLQDELKYSLSFSLEPKHTFTYILNEINGEARDEKGIKTFQI 139 Query: 95 -NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 + + I S S + + +F+D S RL ++A + + K +E+ Sbjct: 140 SDLADAFND-IESTSSDFEGLFQDVQLYS--PRLGANAQKQADTIANVIKAIGNLEIV-- 194 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 P V+ + YE+LI +F SE + A +F TP+ V L T L L + T Sbjct: 195 HAPGDVLGDAYEYLIGQFASETGKKAGEFYTPQKVSELLTKLTLVNK------NYPNGMT 248 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP G+G L + ++ D G ++ +GQE+ T + M++ ++S Sbjct: 249 VYDPAMGSGSLLLNFRKYIEDVGGKENE---VIYYGQEINMSTFNLAKMNMILHGVDS-- 303 Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +++++ G TL +D + F + NPP+ + W +K ++ RF P Sbjct: 304 ---SNQHLRNGDTLDEDWPPLSQTMFDSVVMNPPYSQHWSANKGFLQ-------DPRFSP 353 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S FL+H L+ G AIVL LF G A E +IR+ LLEN Sbjct: 354 YGVLAPKSKADYAFLLHGLYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRKKLLEN 406 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 I+A++ LP +LF+ T+I T + +L K V I+A+ + +N + + Sbjct: 407 GSIDAVIGLPANLFYNTSIPTVIIVLKKDKENRS---VMFIDASKGFEKKKN----QNAL 459 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472 ++ ++ILD Y RE+ K L Sbjct: 460 REEDIQKILDTYRKREDLKRYAHLAKYD 487 >gi|172039827|ref|YP_001799541.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] gi|171851131|emb|CAQ04107.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] Length = 528 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 200/551 (36%), Gaps = 69/551 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------EKYLA 61 + +WK A+ L G + + ++L L+ + A + R + Sbjct: 7 KEFEDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRLELLAELEEEGATAEE 66 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIF 115 D +++++ F+ E L + + +S + A+A+ Sbjct: 67 IAEELEDRDAYLE--KNVFWVAKEARWDYLQRHSKGKTDDAGGEFKSIGKLIDEAAEALM 124 Query: 116 -EDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFG 167 ++ T+ + L ++ FS + ++ +YE+ + RF Sbjct: 125 TDNLSLEGTLPHNYNSDSVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFA 184 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + +F TPR VV +L +YDP CG+GG A + Sbjct: 185 SAEGKRGGEFYTPRSVVRTLVEIL-----------EPTEGRVYDPCCGSGGMFVQAEKFL 233 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 P + +GQEL T + + I L S + + G T ++D+ Sbjct: 234 DAHDKD---PSAIAIYGQELNERTWRLARMNLAIHALNSKGLGE-----RWGDTFARDIH 285 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 G Y L+NPPF ++ +N + R+ G+P + + ++ H+ +KL Sbjct: 286 PGVEMDYVLANPPFN---------IKDWVRNTDDKRWSYGVPPAKNANFGWMQHIISKLS 336 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G A + + N SGE EIR+ +LE+D++ +V LP LF T I + Sbjct: 337 AQGEAGVVMA---NGTMTSN---TSGEGEIRKNMLEDDIVSCVVTLPAQLFRGTQIPVCV 390 Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 W + K +RRG+ LI+A +L + R +D+ ++I + + + Sbjct: 391 WFFAKDKGAGSKGFVDRRGEFLLIDARELGHMVDRTE---RTFSDEDIQKIANTFRTWR- 446 Query: 462 GKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 G+ S +Y GY + + + + L + + + L Sbjct: 447 GRSSAEGEYEDAPGYCKSVSLDEIREADYALTPGRYVGFAEEEEDGEPIDEKIARLTAEL 506 Query: 520 KPMMQQIYPYG 530 + + Sbjct: 507 TAALDESARLN 517 >gi|95929209|ref|ZP_01311953.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684] gi|95134707|gb|EAT16362.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684] Length = 550 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 99/590 (16%), Positives = 197/590 (33%), Gaps = 97/590 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E +L +W A+ L + +L ++ + A + R + E++ Sbjct: 1 MSE-QEFLQNLEKKLWNAADKLRSTLDAAQYKHAVLGLLFIKYVSDAFDIRRQELIEQFQ 59 Query: 61 AFG----------------GSNIDLESFVK---VAGYSFYNTSEYSLSTLGSTN------ 95 I +E V+ F+ + + L Sbjct: 60 DENHDYYLDPADFASEVECQEEIAVELEVRDYYTEKNVFWVPALGRWANLQDNAKLPPGT 119 Query: 96 -------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136 ++ I + K + I L ++ Sbjct: 120 KIEIKNGKTTTYEMRSVGRLIDDALDAIEKDNPKLKRVLNKSYGRLQI----DPAKLGEL 175 Query: 137 CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + I ++ ++ ++YE+ + +F + F TP+ +V L +L Sbjct: 176 IDLIATIPFKHASLQAKDILGHVYEYFLGQFALAEGKKGGQFYTPKSIVSLIVEML---- 231 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 +YDP G+GGF + + + G + +GQE T + Sbjct: 232 -------QPFSGRVYDPAMGSGGFFVQSEQFIKEHG---GKLGNVSIYGQEYNHTTWQLA 281 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M+IR L+ + ++ + +T + D R + ++NPPF K Sbjct: 282 AMNMVIRGLDFNFGKEPA------NTFTNDQHPDLRADFVMANPPFNMKEW-------DT 328 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + R+ G P + + +L H+ L GG ++L++ + + E Sbjct: 329 GVKDDDPRWHYGKPPSGNANFAWLQHMLYHLAP----GGSMGLLLANGSM--SSNTNTEG 382 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDL 430 +IRR L+E+DL+E +VALP LF T I +W L+ K +R GKV I+A +L Sbjct: 383 DIRRALVEHDLVECMVALPGQLFTNTQIPACIWFLTRNKKARGNLADRSGKVLFIDARNL 442 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490 R + +++ D + + G+ D F + + F+L Sbjct: 443 GYMKDRV---LRDFKPEDIQKVADTFHVWQQGE--DYADEAGFC-CSATLEEIKKHDFVL 496 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 ++ + + + +Q E +K ++ Sbjct: 497 TPGRYVGAADEV---EDGEPFAEKMARLTTQLQEQFARSSELEGDIKRNL 543 >gi|149199876|ref|ZP_01876905.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155] gi|149137047|gb|EDM25471.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155] Length = 502 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 96/490 (19%), Positives = 169/490 (34%), Gaps = 62/490 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + + +W + G + IL L+ L + +++Y Sbjct: 1 MT-TQINQDDINKKLWSCCDIFRGTISADIYKDYILSMLFLKYLSDVWQDHYDNYKKQYG 59 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--------STNTRNNLESYIASFSDNAK 112 + + F + E + L L + S + Sbjct: 60 -----DEPELIAEMMKSERFILSEESNYKYLYKKRHEAGNGERIDQALHAIEESNLSKLR 114 Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFG 167 +F+D F+ +K L + + F+ EL ++ N YE+LI +F Sbjct: 115 GVFQDISFNSDKLGEEKQKNEHLKDLLEVFAEAELDLRPSRVGKLDIIGNAYEYLIAKFA 174 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + A F TP +V L +L P + DP G+G + V Sbjct: 175 AGGGSTAGQFFTPPEVSDLMAEIL----------DPQEGDEMCDPCTGSGSLIMKCGRKV 224 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 +H GQE T A+ M + + + I+ G TL Sbjct: 225 QQ---NHNGSKNYALFGQESIGSTWALAKMNMFLHGED-------NHRIEWGDTLRNPKL 274 Query: 288 TG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 ++ +NPPF + + GRF G+P + G F+ H+ Sbjct: 275 IDSQGQLLQYDIVTANPPFSLD-----KWGHDGASDDKFGRFRRGIPPKTKGDYAFISHM 329 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L+ GR A+V+ LF G S E +IR L+E +L++ ++ LP +LFF T Sbjct: 330 IETLKPQS---GRMAVVVPHGVLFRG---SSEGKIRTKLIEENLLDTVIGLPANLFFGTG 383 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 I + ++ KV I+A+ + GK + ++ + ++I+ + RE Sbjct: 384 IPAAILYFK---KKKDDKKVLFIDASREFD----SGKNQNKLSSENVKKIIKTFNDREAI 436 Query: 463 KFSRMLDYRT 472 L Sbjct: 437 DKYSYLASLE 446 >gi|300775817|ref|ZP_07085678.1| type I site-specific deoxyribonuclease methyltransferase subunit [Chryseobacterium gleum ATCC 35910] gi|300505844|gb|EFK36981.1| type I site-specific deoxyribonuclease methyltransferase subunit [Chryseobacterium gleum ATCC 35910] Length = 516 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 107/544 (19%), Positives = 203/544 (37%), Gaps = 78/544 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL--------ECALEPTR 52 M+E L +W A L G +F IL F + L LE + Sbjct: 1 MSEEQKKI--LEQQLWNIANTLRGKMNADEFRDYILGFIFYKYLAEKMEIYANSILEEDQ 58 Query: 53 -----------------SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 A+RE+ L G + N + L L Sbjct: 59 IQFRDIKEDTPKGLEYIEAIREEALETLGYFLKPSELFSEITKRGDN--NFILEDLQKIL 116 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFS-STIARLEK--AGLLYKICKNFSGIELHPDTVPD 152 T L + ++ + +F D D + + + R L+ K+ K+ I+ + Sbjct: 117 TNIQLSTMGTQSEEDFEDLFSDMDLNSNNLGRTADARNTLIVKVLKHLDEIDFKLNDTEL 176 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ + YE+LI +F S + A +F TP++V + ++ ++++YDP Sbjct: 177 DVLGDAYEYLIGQFASGAGKKAGEFYTPQEVSKILAKIVTTGK--------NRLKSVYDP 228 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L V D +GQE+ T+ + M++ + Sbjct: 229 TCGSGSLLLRVAREVKDVN---------NFYGQEMNRTTYNLARMNMILHGVH-----YR 274 Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 +I+Q TL F ++NPPF KW + + + + L Sbjct: 275 QFDIKQEDTLEHPQHLNDMPFEAIVANPPFSAKWSANPLFLNDDRFSQY-----GKLAPS 329 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 S F+ H+ L G AIVL LF G A E IR++L+E + ++A+ Sbjct: 330 SKADFAFVQHMIYHLAE----NGTMAIVLPHGVLFRGAA---ELHIRKYLIEQKNYLDAV 382 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + + K E + I+A+ + ++N + ++ ++ Sbjct: 383 IGLPANIFYGTSIPTCILVFKKCK--EDPDHILFIDASKEFEKVKN----QNMLREEHID 436 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y +R + +S + + + P ++ ++ +++ Sbjct: 437 KIVETYRNRTTIEKYSHLATLKEVEENDYNLNIP---RYVDTFEAEEEIDIQAVMQEIKS 493 Query: 510 LHQS 513 L Sbjct: 494 LEAK 497 >gi|311033111|ref|ZP_07711201.1| Type I restriction-modification system methyltransferase subunit [Bacillus sp. m3-13] Length = 538 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 98/496 (19%), Positives = 198/496 (39%), Gaps = 62/496 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64 +A + + +W+ A L G +++ ILPF R L E + E++ Sbjct: 2 SNARDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQEEYLKVNDLEEFYEVTD 61 Query: 65 SNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIASFSDNAK------ 112 + +++ Y Y+ + S ++ + SF+ NAK Sbjct: 62 DTEKEDYLEEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSFNTNAKRNAVAE 121 Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 +F D + T + E+A L I + D+ ++ ++YE+LI + Sbjct: 122 ADFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFTFKDDSG-RDILGDVYEYLIGQ 180 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + +F TP +V + ++ + D G +YDPT G+G L Sbjct: 181 FAANAGKKGGEFYTPHEVSQILAKIVTNDAD-----GTGDQFRVYDPTMGSGSLLLTVQK 235 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + + +GQEL T+ + +++ + +++ TL D Sbjct: 236 EL----PNGDKEGSVEFYGQELNTTTYNLARMNLMMHGVNYRNME-----LKRADTLDAD 286 Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336 + +F +SNPP+ + W D V++E + RF G G+ S Sbjct: 287 WPFAEKDGTQIPLKFDAVVSNPPYSQNW--DTKDVDRE----KDTRFKGFGVAPASKADY 340 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H L+ G AIVL LF G E +IR+ +++N+L++ ++ LP + Sbjct: 341 AFVLHGLYHLDKA----GTMAIVLPHGVLFRGA---SEGKIRKNIIDNNLLDTVIGLPPN 393 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ +I T + + + + + I+A+ + +GK + + + +I+ Y Sbjct: 394 LFYGASIPTCVLVF-KGREARKSKDILFIDASKEF----KKGKSQNKLTAENINKIIGTY 448 Query: 457 VSRENGKFSRMLDYRT 472 +R++ + + Sbjct: 449 SNRKDVEKYAHVASLD 464 >gi|312115547|ref|YP_004013143.1| type I restriction-modification system, M subunit [Rhodomicrobium vannielii ATCC 17100] gi|311220676|gb|ADP72044.1| type I restriction-modification system, M subunit [Rhodomicrobium vannielii ATCC 17100] Length = 824 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 103/485 (21%), Positives = 192/485 (39%), Gaps = 75/485 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + + +W++ + L G + + IL ++ + Sbjct: 1 MAVKKSQIYSSLWQSCDKLRGGMDASQYKDYILVLLFVKYVSDRY--------------- 45 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120 + V G SF + L + + IA ++ K + + +F Sbjct: 46 -AGDPNAVIVVPEGGSF-----ADMVKLRGDKEIGDRINKIIAKLAEANGLKGVIDVANF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + +L L + F EL+ D ++ + YE+L+R F +E + Sbjct: 100 NDP-DKLGDGKEMIDRLSDLIAIFDRPELNFRKNRADGDDILGDAYEYLMRHFATESGKS 158 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP +V + ++ + + + +TLYDPTCG+G L A Sbjct: 159 KGQFYTPAEVSRIIAKVI------GIRHAKSVSQTLYDPTCGSGSLLLKA---------R 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 + P + +GQE + T A+ M++ +I + +TLS F Sbjct: 204 SESPVGITVYGQEKDVATRALAKMNMVLH-------DCPDADIVRDNTLSSPYFREKDQS 256 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 KRF + ++NPPF K ++ + GRF G P +G +L+H+ L+ Sbjct: 257 LKRFDFVVANPPFSDKAWTTGVSLGSD---DPDGRFEYGTPPAKNGDYAYLLHVIASLKS 313 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AI+L LF G A E+EIR+ ++ I+ I+ LP +LF+ T I + Sbjct: 314 T----GKGAIILPHGVLFRGNA---EAEIRKNIIAKGFIKGIIGLPANLFYGTGIPACII 366 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467 +L + R G + +I+A+ + +G K R + +I+D + + + FSR+ Sbjct: 367 VLDKENADRRTG-IFMIDASKGFV---KDGNKNR-LRAQDIHKIVDAFTKQIEIEKFSRL 421 Query: 468 LDYRT 472 + Sbjct: 422 VPLSE 426 >gi|253735333|ref|ZP_04869498.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|253726740|gb|EES95469.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 579 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 346 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 507 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 508 TIDKYSYSATLQEIAENDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 567 NAYLKELGVLKD 578 >gi|313892812|ref|ZP_07826393.1| type I restriction-modification system, M subunit family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442743|gb|EFR61154.1| type I restriction-modification system, M subunit family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 348 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 106/372 (28%), Positives = 180/372 (48%), Gaps = 44/372 (11%) Query: 313 EKEHKNGELGRFGP---------GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K+ RF +P+ISDG +LFL++ +K++ G R A V ++S Sbjct: 4 NGWKKDILDSRFNAYLEDGTQLMMIPRISDGQLLFLLNNVSKMKTDTALGSRIAEVHNAS 63 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G AGSGES RR+++ENDL+EAI+ALP ++F+ T + T++W+LSN+K + R+GK+Q Sbjct: 64 SLFTGDAGSGESNARRYMIENDLVEAIIALPDNMFYNTPLGTFIWVLSNKKEDRRKGKIQ 123 Query: 424 LINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 LI+AT + + +R N GKK ++ D R++I+ I++ E SR+ D FG+ + V R Sbjct: 124 LIDATAMKSPLRKNMGKKNCELSSDIRKEIIRIFMDMEESDVSRVFDNDEFGFWLVTVER 183 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L++ D+ + + L + + W+ Sbjct: 184 SLKLRIYPDRKIPSSVFK-------KEEEAELVRRTLATLSDNVPLDDWSAFAKAT---- 232 Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQ 600 K + + K A V+ D +L E +P+ I Sbjct: 233 --------KLKAAILKKIRPYITEKSADAKTVSG-----ESDADLRTTEIIPFKYEGGID 279 Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660 + EV P+ PDA+ D++ ++GYE++F ++FY+ R++ +I ELKG+ Sbjct: 280 QFMENEVHPYAPDAW--------YDEKNIKIGYELSFIKYFYKPMELRQMSEIVEELKGL 331 Query: 661 EAQIATLLEEMA 672 EA +L ++ Sbjct: 332 EADANGMLGDIL 343 >gi|258424533|ref|ZP_05687410.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9635] gi|257845128|gb|EEV69165.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9635] Length = 569 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 117/545 (21%), Positives = 205/545 (37%), Gaps = 68/545 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 60 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 119 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 120 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 178 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 179 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 238 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 239 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 290 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 291 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 335 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 336 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 390 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 391 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 443 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + + D Q +I++ Y +E Sbjct: 444 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLTDAQVERIINTYKCKE 497 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P + ++ + + + + +I Sbjct: 498 TIDKYSYSATLQEIAENDYNLNIPRYVDTFEEEEPIDLEQVQQDLKNIDKEIAQVEQEIN 557 Query: 520 KPMMQ 524 + + Sbjct: 558 AYLKE 562 >gi|1747491|gb|AAC44666.1| ALXA and HSDM [Mannheimia haemolytica] Length = 616 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 102/571 (17%), Positives = 191/571 (33%), Gaps = 82/571 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56 L +W A+ L + ++ ++L F L+ + + ++ ++ Sbjct: 81 LNELDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 140 Query: 57 ---EKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLSTLGST---NTRNNL--ESYI 104 + S I E + A F+ + + S N + L Sbjct: 141 LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 200 Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151 S FE + R+ +L + FS Sbjct: 201 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 260 Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 261 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML-----------EPYSG 309 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGF A + + + +GQE T + V M IR + D Sbjct: 310 RIYDPAMGSGGFFVQADRFIQAHAGNRNA---ISVYGQESNSTTRKLAVMNMAIRGIPFD 366 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + TL L K+ ++NPPF +K R+ G Sbjct: 367 FGD------KPEDTLLNPLHIDKKMDVVMANPPFNQKEW-------WNESLANDPRWAYG 413 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 P + + +L H+ L G+ A++ + + SGE +IR+ +++ DL+ Sbjct: 414 TPPQGNANFAWLQHMIYHLSPK----GKMALLPRNGSM--SSQTSGEGDIRKNIVQADLV 467 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ALP LF T I +WI++ K +G+V INAT + R D Sbjct: 468 EAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYLKDRV---LRDFTAD 522 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506 +I D Y + + K + + F Y + + F+L ++ + + Sbjct: 523 DIAKISDTYHNWQ--KQNGYENIPAFCYCA-TLDEIAKNDFVLTAGRYVGAVQEENDGVR 579 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 + Q + + Q +K Sbjct: 580 FAEKMQELTALLNEQFKQGRELEQQIAENLK 610 >gi|34557510|ref|NP_907325.1| type I site-specific deoxyribonuclease [Wolinella succinogenes DSM 1740] gi|34483227|emb|CAE10225.1| TYPE I SITE-SPECIFIC DEOXYRIBONUCLEASE [Wolinella succinogenes] Length = 520 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 103/543 (18%), Positives = 200/543 (36%), Gaps = 75/543 (13%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---------- 60 L +W A L G +F IL F + L +E + ++ Sbjct: 9 LEQQLWNIANTLRGKMDADEFRDYILGFIFYKYLSEKMEYYADEILKEDEIGYLSLDENS 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKA 113 A G ++ + ++ + + + +L + + Sbjct: 69 AEGQEYLEAIREEAIEKLGYFLKPSELFTQIAKRGNGDKNNFILEDLTKILRRIEQSTMG 128 Query: 114 IFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + DF L+ K L+ K+ + I V+ + YE+ Sbjct: 129 HESEDDFVHLFEDLDLSSTKLGKTEEAKNALIAKVLFHLDQINFELKNHDRDVLGDAYEY 188 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F + + A +F TP+ V + ++ ++++YDPTCG+G L Sbjct: 189 LIAQFAAGAGKKAGEFYTPQQVSKILAKIV--------TNGKSKLKSVYDPTCGSGSLLL 240 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 V+D + +GQEL T+ + M++ + +I+Q T Sbjct: 241 RVAKEVSDVSA---------FYGQELNRTTYNLARMNMIMHDVH-----YRKFDIKQEDT 286 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG-LPKISDGSMLFL 339 L +F ++NPPF W + + + RF G L S F+ Sbjct: 287 LEHPQHGAMKFEAIVANPPFSAHWSANPLHMSDD-------RFSQYGVLAPSSKADFAFV 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLF 398 H+ + L + G AIVL LF G S E IRR+L+EN + ++A++ LP ++F Sbjct: 340 QHMIHHL----DENGTMAIVLPHGVLFRG---SSEGTIRRYLIENKNYLDAVIGLPANIF 392 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+I T + + +K E + I+A++ + +N + I+ D+ +I+ Y + Sbjct: 393 YGTSIPTSILVF--KKCREDSEHILFIDASNDFEKAKN----QNILTDEHVEKIITTYKN 446 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R + +S + + P + ++ + R++ ++ Sbjct: 447 RIEIERYSHLAPLSEIAQNDYNLNIPRYVDTFEEEEAIDLEAVTRELREIDEQMKTTDAT 506 Query: 518 ILK 520 I Sbjct: 507 IAA 509 >gi|254506511|ref|ZP_05118653.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus 16] gi|219550685|gb|EED27668.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus 16] Length = 514 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 105/526 (19%), Positives = 195/526 (37%), Gaps = 72/526 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G+ DF IL + L L + + +D + + Sbjct: 13 LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGITFIGAVDNKELLN 72 Query: 75 ------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-------DFDFS 121 V ++ + S+L + I I + DF+ Sbjct: 73 DLREECVENLGYFIAPKQLFSSLAGRGKKQEFI--IDELDRTLADIEQSTTAADSADDFN 130 Query: 122 STIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 L+ + L+ ++ + I+ H + ++ + YE+LI +F S Sbjct: 131 GLFEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASG 190 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP+ V + L+ G ++++YDPTCG+G L V Sbjct: 191 AGKKAGEFYTPQQVSKILAKLVSLN---------GNVKSVYDPTCGSGSLLLRVAREVGS 241 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 GQE P T+ + ML+ + D +I+ TL + Sbjct: 242 HNLE--------FCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLE 288 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +RF ++NPPF W ++ + E L S F++H+ ++L Sbjct: 289 QRFDAVVANPPFSANWSANELHLNSERFADY-----GKLAPKSKADFAFVLHMIHQL--- 340 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLW 408 N G A+V+ LF G A E IR+ L+E + ++A++ LP +FF T I T + Sbjct: 341 -NETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIFFGTGIPTCIL 396 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467 + +K + V I+A++ + GK + + +D +I++ Y RE+ + F+ + Sbjct: 397 VF--KKNRKNDDNVLFIDASNHFEK----GKAQNFMRNDDVERIVEAYSKRESVEKFAHV 450 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + P ++ + D +L+ L Sbjct: 451 AKLIEIEENDYNLNIP---RYVDTFEEEEPVALDTVASELAELETK 493 >gi|50914977|ref|YP_060949.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10394] gi|50904051|gb|AAT87766.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10394] Length = 526 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 120/502 (23%), Positives = 197/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L +++ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLDQHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ ++ + V G Y + L + LES Sbjct: 58 NTFTDAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 FS ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFSDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + + + + Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGVAIENQHLGNA 280 Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 TL D T + ++ L NPP+ KW + RF G L Sbjct: 281 -----DTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|93006185|ref|YP_580622.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5] gi|92393863|gb|ABE75138.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5] Length = 529 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 201/549 (36%), Gaps = 70/549 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAFGGSNIDLESFV 73 +W A L G + +++ ++L L+ + E R + + Y Sbjct: 21 LWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHINMVQAY---- 76 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126 FY E S + + ++ S I + + K D FS Sbjct: 77 -TKDNVFYLPEESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGLT 135 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 K L + N I + + +YE+ + +F + +G +F TP+ VV+L Sbjct: 136 ASKLAALIDVVNNIDTIGNP----EEDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVNL 191 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP CG+GG ++ + + K + +GQE Sbjct: 192 IAEMV-----------EPYQGKIYDPCCGSGGMFVQSIKFIESHHGNTK---DVSIYGQE 237 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T+ + + IR + S+ + T KD + + ++NPPF + Sbjct: 238 YTSTTYKLAKMNLAIRGISSNLGDVAA------DTFFKDQHEDLKADFIMANPPFNQ--- 288 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + + R+ G P + + +++H+ +KL G A VL++ + Sbjct: 289 ---KDWRASDELVDDPRWAGYPTPPTGNANYAWILHMISKLSEH----GTAGFVLANGSM 341 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 SGE EIR +++NDL++ ++ALP LF+ T I LW +S K Sbjct: 342 ST--TTSGEGEIREQIIKNDLVDCMIALPGQLFYTTQIPVCLWFISKDKQATSADSKAKG 399 Query: 417 --ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR--T 472 R G+ I+A ++ I K + D I Y + K + + Sbjct: 400 LRNRSGETLFIDARNIGAMIDRTHK---EFSTDDIEAIAKTYHAWRGEKEAGGYEAYADE 456 Query: 473 FGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 GY + L ++ + ++L ++ L++ + + Q+ Sbjct: 457 AGYCKSASLDDIKANDYVLTPGRYV---GAAAIEDDGIPFETKMLELSQTLYAQMQESEK 513 Query: 532 AESFVKESI 540 ++ +++++ Sbjct: 514 LDATIRQNL 522 >gi|239629954|ref|ZP_04672985.1| type I restriction-modification system methyltransferase subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527566|gb|EEQ66567.1| type I restriction-modification system methyltransferase subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 532 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 106/494 (21%), Positives = 196/494 (39%), Gaps = 77/494 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52 M + T +L +W +A+ L +++ +L + L LE Sbjct: 1 MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58 Query: 53 SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107 + + + A+ ++ + V+ Y+ + + L + + Sbjct: 59 TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116 Query: 108 SDNAKAI----------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 S + + I FED D S +L ++ ++ + K S ++L + Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYS--RKLGATPQKQNQVISDVMKQISTLDLVGQN-TN 173 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ + YE+LI +F S+ + A +F TP+ V L T + + + + T+YDP Sbjct: 174 DILGDAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDP 227 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 T G+G L +A + + GQEL T+ + M++ + + Sbjct: 228 TMGSGSLLLNARRY-------SNERLSINYFGQELNTSTYNLARMNMILHGVPIN----- 275 Query: 273 SKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP 329 ++++ TL +D F + NPP+ W+ K RF GL Sbjct: 276 NQHLHNADTLDQDWPIEEPTNFDAVVMNPPYSAHWQPSKGTEN-------DPRFVSYGLA 328 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H L+ G IVL LF G A E IR+ LLEN I+ Sbjct: 329 PKSKADFAFLLHGYYHLKDT----GVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDT 381 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++FF T+I T + +L K V I+A+ + +N + + DD Sbjct: 382 VIGLPANIFFNTSIPTTVTVL---KKSRTTRDVLFIDASKEFEKAKN----QNHLTDDNI 434 Query: 450 RQILDIYVSRENGK 463 ++IL+ Y++R++ Sbjct: 435 QKILETYINRKDVD 448 >gi|289550025|ref|YP_003470929.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Staphylococcus lugdunensis HKU09-01] gi|289179557|gb|ADC86802.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Staphylococcus lugdunensis HKU09-01] Length = 518 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 115/545 (21%), Positives = 206/545 (37%), Gaps = 80/545 (14%) Query: 1 MTEFTGSAASLAN---FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M+ LA+ +W A DL G+ +F IL R L E + + + Sbjct: 1 MSTTEKQRQQLADLQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKNEDIAAGLLK 60 Query: 58 KYLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + ++ +++ +A F ++ S L + + I S+ Sbjct: 61 EDDISYEEAMNNDTYKPIVEKELIARIGFVIEPQFLFSNLINKIEAQTFQ--IEDLSNAV 118 Query: 112 KAI----------------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTV 150 K + F+D D +S +RL L+ K+ + + + Sbjct: 119 KNVENSTRGHDSEDDFIHLFDDMDLTS--SRLGNTNAKRTQLISKVMVQIATLPFVHSDL 176 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++ + YE+LI +F + + A +F TP+ V + ++ + L R++Y Sbjct: 177 EIDMLGDAYEYLIGQFAASAGKKAGEFYTPQQVSTILAKIVTTGRNDL--------RSIY 228 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L + +GQE T+ + ML+ + Sbjct: 229 DPTCGSGSLLLRVGAEAK----------VRQYYGQEYNSTTYNLARMNMLLHDVN----- 273 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I+ TL +RF ++NPP+ W D +E E + L Sbjct: 274 YKQFQIENDDTLESPAVHDERFDAVVANPPYSAHWSADPSFLEDERFSNY-----GKLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389 F+ H+ L+ G A+VL LF G A E IR++L+E + I+A Sbjct: 329 KKTADYAFIQHMIYHLDDH----GTMAVVLPHGVLFRGNA---EGTIRKYLIEDKNYIDA 381 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP +LFF TNI T + + +K E V I+A+ + GK + + DD Sbjct: 382 VIGLPANLFFGTNIPTCILVF--KKCREESDDVLFIDASQSFEK----GKNQNHLTDDDV 435 Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 +I+D Y RE K+S ++ + P ++ ++ D +KL Sbjct: 436 NKIVDTYRQRETIDKYSFVVSLDEIRENDYNLNIP---RYVDTFEEEEPIDLDQVQQKLK 492 Query: 509 PLHQS 513 + + Sbjct: 493 DIDKE 497 >gi|329114039|ref|ZP_08242803.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter pomorum DM001] gi|326696578|gb|EGE48255.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter pomorum DM001] Length = 537 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 107/545 (19%), Positives = 194/545 (35%), Gaps = 67/545 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77 A+ L + + +D+ V L LR + A E + + + +A Sbjct: 41 AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM-----LDDPAAAEDPDEYLAE 95 Query: 78 YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129 F+ S L +++ I + + K + + Sbjct: 96 NIFWVPENARWSHLRDNARSSSIGKLIDEAMLAIEKANPDQLKGVLPKDYGRPAL----D 151 Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + +L ++ S I + D V+ +YE+ + F + +F TP VV Sbjct: 152 SVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 211 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++L +YDP CG+GG + V G + +GQE Sbjct: 212 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 257 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + +R + +D I+ + + +D RF Y L+NPPF Sbjct: 258 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 307 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 E R+ G P + + +L H+ L G A +VL++ + Sbjct: 308 -----DWWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSMS 358 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 + + E EIRR ++E D+++ +VALP LF+ T I LW L+ K + +RRG++ Sbjct: 359 SN--QNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKKQKGWRDRRGEI 416 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVL 481 I+A L + RR + D+ +I D Y + D F + + Sbjct: 417 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKDAGTYEDSPGFC-KSATLD 472 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + F+L E + S + + K + +Q + + S+K Sbjct: 473 EVEQHGFVLTPGRYVGAEEA---EEDSVPFTERFAALEKTLKEQFAQGEELNAKITASLK 529 Query: 542 SNEAK 546 K Sbjct: 530 LIVQK 534 >gi|294790580|ref|ZP_06755738.1| type I restriction-modification system, M subunit [Scardovia inopinata F0304] gi|294458477|gb|EFG26830.1| type I restriction-modification system, M subunit [Scardovia inopinata F0304] Length = 566 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 108/585 (18%), Positives = 205/585 (35%), Gaps = 79/585 (13%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51 E A +L++ +W A DL G ++F IL F R L E Sbjct: 12 EKNNQAGNLSSQLWAMANDLRGKMDASEFRDYILGFIFYRYLSDRQEHYLESSGTVDIEE 71 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-----LSTLGSTNTR-NNLESYIA 105 ++ + Y ++ Y L + + R + ++ Sbjct: 72 GESLNDAYTRCSKREGIELYREDLSNELGYAIDPADTWQSLLDKIQNQRIRPEDFQNIFD 131 Query: 106 SFSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD 152 F NA + +F+D + S++ + +A L I + + ++ D Sbjct: 132 HFKRNALLNPNSEKDFRDVFDDINLSNSSLGTSTAARAKALAAIVEKINEVDF-LDEGGR 190 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK------ESPGMI 206 ++ ++YE+LI +F + A +F TP +V + L+ + Sbjct: 191 DILGDVYEYLIEKFAGSSGKKAGEFYTPHEVSKVLAKLVTYAAPDASDESKDVINNEDST 250 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 T+YDPT G+G L + ++ +GQEL T + +L+ + Sbjct: 251 FTIYDPTMGSGSLLLTVQKELTGLDHRSRV----HFYGQELNRTTFNLARMNLLMHGVGY 306 Query: 267 DPRRDLSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 ++ TL D G F ++NPP+ +KW + Sbjct: 307 QSMF-----LRNADTLESDWPDGVDAQGINHPLFFDAVVANPPYSQKW-------DNNAT 354 Query: 318 NGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + RF L S F+ H ++ GR AIVL LF G A E Sbjct: 355 KMKDPRFKEYGKLAPKSAADFAFVEHCLYHMK----LTGRMAIVLPHGVLFRGGA---EG 407 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 IR+ LLE + ++A++ LP++LF+ T IAT + + KT V I+A+ + + Sbjct: 408 IIRKALLEKNYLDAVIGLPSNLFYSTGIATVVLVFRKDKT---TDNVLFIDASQHFEKRK 464 Query: 436 NEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 N + + D+ I Y R++ K + + + + P + ++ Sbjct: 465 N----QNTLRDEDINLIFQTYKDRKDVDKLAHVASRDEIIHNEYNLNIPRYVDTFEEEEP 520 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 + E + + + + + + ++ Sbjct: 521 IDLNEVNQQIADVDKEIERLQTQFESMVADLVETSIDDDENEAKN 565 >gi|284051207|ref|ZP_06381417.1| type I restriction-modification system, M subunit [Arthrospira platensis str. Paraca] Length = 499 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W ++L G + + +L L+ + Sbjct: 1 MAVKKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 + + G +F L L + + I + + + K + + DF Sbjct: 45 YAGKPNPLIIVPQGAAFS-----DLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L ++ F GI L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + +L P T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 P L +GQE++ T+++ M + + I + +TL+ + K Sbjct: 204 APNGLSIYGQEMDNATYSLARMNMFMHN-------HPTAEIWKDNTLAAPYWKEKDGSLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF + ++NPPF K + + E RFG G+P +G FL+H+ L+ Sbjct: 257 RFDFAVANPPFSYKSWSNGVDTAR----DEFNRFGYGVPPAKNGDYAFLLHILKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+AA++L LF G A E+ IR+ L+ I+ I+ LP +LF+ T I + +L Sbjct: 312 ---GKAAVILPHGVLFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVL 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469 + R G + +I+A+ + +G K R + +I+D++ ++ ++SR++ Sbjct: 366 DKAEAATRDG-LFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNNQLEIPRYSRLVS 420 Query: 470 YRT 472 Sbjct: 421 LEE 423 >gi|153807713|ref|ZP_01960381.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185] gi|160886165|ref|ZP_02067168.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483] gi|160889103|ref|ZP_02070106.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492] gi|149129322|gb|EDM20536.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185] gi|156108050|gb|EDO09795.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483] gi|156861570|gb|EDO55001.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492] Length = 497 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 106/492 (21%), Positives = 187/492 (38%), Gaps = 66/492 (13%) Query: 1 MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + T + A L NF+++ + G +F I P +R+ + Sbjct: 1 MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108 A S D E + F + NL + I Sbjct: 59 ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112 Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 D + F + L + + + ++ S +L P +M + YE L+++ Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRKLGNKDYPADLMGDAYEILLKK 171 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + A +F TPR VV L +L P T+YDP CG+GG L +A+ Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIR 221 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 ++ D GQE A+ + + N+ QG TL Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269 Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +F ++NPPF + + ++K R G P S G ++ H Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + + +G GR A+V+ LF G E+EIR+ L+E+DLIEA+V L LF+ T Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESDLIEAVVTLGDKLFYGT 378 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460 ++ I+ K G++ +I+ + + T R + I+ ++ ++ +Y + + Sbjct: 379 GLSPCFLIIRRMKQAHHSGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 434 Query: 461 NGKFSRMLDYRT 472 +SR++ + Sbjct: 435 EEDYSRIVTLQE 446 >gi|292491160|ref|YP_003526599.1| type I restriction-modification system, M subunit [Nitrosococcus halophilus Nc4] gi|291579755|gb|ADE14212.1| type I restriction-modification system, M subunit [Nitrosococcus halophilus Nc4] Length = 739 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 100/473 (21%), Positives = 191/473 (40%), Gaps = 73/473 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W++ ++L G + + +L ++ + R+A+ Sbjct: 1 MAIKKSELYSSLWQSCDELRGGMDASQYKDYVLTLLFVKYMSDKYAGNRNAL-------- 52 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF + L + + + I ++ + K + + DF Sbjct: 53 --------IVVPEGGSF-----ADMLKLKGDKEIGDKINTIIGRLAEENDLKGVIDVADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L + L K+ F+ I+L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGRGKEMVDRLSKLLTIFNDIDLRANRAEGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + +L +T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRIMAKVL------GISRDTRQDQTVYDPTCGSGSLLLKVAD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTG---K 290 P L GQE++ T A+ M++ + I +TL+ K Sbjct: 204 APRGLSIFGQEMDNATSALARMNMILH-------DAPTAEIWHANTLASPYWKHKDGSLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF + + ++ H GRF G P +G FL+H+ L+ Sbjct: 257 TFDFVVANPPFSQ--KNWTSGLDPAH--DPFGRFELGAPPAKNGDYAFLLHIIKSLKSTG 312 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G A++L LF G A E+ IR+ L+ LI+ I+ LP +LF+ T I + ++ Sbjct: 313 QG----AVILPHGVLFRGGA---EAVIRKNLIRRGLIKGIIGLPPNLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + R G V +++A+ + +G K R + +I+D++ + + Sbjct: 366 DKEQAPTRTG-VFMMDASKGYM---KDGNKNR-LRSQDLHKIVDVFTRQIDRD 413 >gi|253732462|ref|ZP_04866627.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723852|gb|EES92581.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 579 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 346 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 401 MIHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 507 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 567 NAYLKELGVLKD 578 >gi|157157373|ref|YP_001461440.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A] gi|157079403|gb|ABV19111.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A] Length = 569 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 103/600 (17%), Positives = 190/600 (31%), Gaps = 113/600 (18%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56 L N WK A+ L + ++ V+L L+ + A E + + Sbjct: 9 LNELDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTTLFRDVGNPDN 68 Query: 57 ------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--------- 95 E+Y +++E + F+ TL + Sbjct: 69 IYAMSRDDYGSDEEYAQAIQEELEVEDYY-TEKNIFWVPKAARWDTLKNKAMLPTGTVLW 127 Query: 96 ----------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139 +N I + K I +L + Sbjct: 128 VDETTGKDVTLRSVSWLVDNALDEIEKTNPKLKGILNRISQYQLG-----NEVLTGLINT 182 Query: 140 FSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 FS + ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 183 FSDANFSNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML 242 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVPHGQE 246 +YDP G+GGF + + + + + +GQE Sbjct: 243 -----------QPYNGRVYDPAMGSGGFFVSSDRFIEEHAGEKQYNAAEQKRNISVYGQE 291 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 P T + M IR ++ + + TL D R + ++NPPF K Sbjct: 292 SNPTTWKLAAMNMAIRGIDFNFGS------KNADTLLDDQHPDLRADFVMANPPFNMKEW 345 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 K R+ G P + + ++ H+ + L G A ++ + S Sbjct: 346 -------WNAKLENDVRWKYGTPPQGNANFAWMQHMIHHLAPK---GSMALLLANGSMSS 395 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGK 421 N E EIRR L++ DL+E +VALP LF T I +W L+ K+ R+G+ Sbjct: 396 NTNN---EGEIRRNLIKADLVECMVALPGQLFTNTQIPACIWFLTKDKSSGNGKAHRKGE 452 Query: 422 VQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 V I+A + + R R + +I D + + K D F + + Sbjct: 453 VLFIDARKIGFMKDRVL----RDFTREDIARIADTFHKWQADK--EYEDEAGFCFSA-TL 505 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 + F+L + + + Q+ E+ +K ++ Sbjct: 506 EDIQKNDFVLTPGRYVGAAEQ---AEDDEPFAEKMARLTAQLKGQLEESAKLEAQIKANL 562 >gi|183600211|ref|ZP_02961704.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827] gi|188022508|gb|EDU60548.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827] Length = 515 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 93/556 (16%), Positives = 205/556 (36%), Gaps = 62/556 (11%) Query: 1 MTEF-TGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M + + + L +WK A+ L + ++ V+L L+ + + E ++ Sbjct: 1 MAKKPKETKSEPLEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYEKLKAG 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 F G++ +S +A F+ + + L + + N+ I + Sbjct: 61 QGEFAGAD-PEDSDEYLAYNVFFVPEKARWTNLLNNAKQPNIGKLVDDAMEAIEEDNPQL 119 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170 K + + A +L ++ I L + V+ +++E+ + F Sbjct: 120 KGVLPKVYARQNL----DATVLGELIDLVGDIALGDAKSRSADVLGHVFEYFLGEFALAE 175 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP+ +V L +L ++DP CG+GG + V Sbjct: 176 GKQGGQFYTPKSIVSLLVNML-----------EPYEGRIFDPCCGSGGMFVQSEKFVESH 224 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + + +GQE T + + IR + S+ + ++ + D Sbjct: 225 QGNI---DNISIYGQESNQTTWRLAKMNLAIRGINSEQVKWNNEG-----SFLNDAHKDL 276 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 R + ++NPPF + + + R+ G P + + ++ H L Sbjct: 277 RADFIIANPPFNVSDWSGE-------QLRKDARWQYGAPPAGNANFAWMQHFLYHLSPK- 328 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWI 409 G+A +VL+ L + SGE +IR L+++ ++I+ IV LP LF T I LW Sbjct: 329 ---GQAGVVLAKGALTS--KTSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWF 383 Query: 410 LSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENG 462 + + ++R G++ I+A +L I K +++D+ + I D Y + ++G Sbjct: 384 MRRDRNNSSVYQDRSGEILFIDARNLGYLINRRTK---VLSDEDIKLISDTYHNWRNKDG 440 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 ++ + + + + + + ++L L + + + + Sbjct: 441 EYEDVAGFCA----SVAIDKVAELDYVLTPGRYVGLADEEDDFDFKERFTALKTEFEAQL 496 Query: 523 MQQIYPYGWAESFVKE 538 ++ + + Sbjct: 497 EEEAKLNQAIAENLAK 512 >gi|87161919|ref|YP_494443.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151221912|ref|YP_001332734.1| type I restriction-modification system, methyltransferase subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|87127893|gb|ABD22407.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150374712|dbj|BAF67972.1| type I restriction-modification system, methyltransferase subunit [Staphylococcus aureus subsp. aureus str. Newman] Length = 579 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 507 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 567 NAYLKELGVLKD 578 >gi|289450588|ref|YP_003474820.1| putative type I restriction-modification system, M subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185135|gb|ADC91560.1| putative type I restriction-modification system, M subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 501 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 96/539 (17%), Positives = 200/539 (37%), Gaps = 59/539 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + IW A LWG +++ VI+ L+ + A + + + Sbjct: 1 MADKSKATLGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDKKYQQLIAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113 G + + + F+ + + + I + + K Sbjct: 59 ---GDGFENDPDAYLEDNVFFVPEDARWEKIAKAAHEPEIGKVIDEAMRAIEADNKKLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + S + + +L + F+ +++ V+ YE+ I +F + +G Sbjct: 116 VLPKNYASPDLDK----KILGNVVDLFTNMDMSDTEGNRDVLGRTYEYCIAQFAEKEGKG 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP +V+ A+L P +YD CG+GG + + + Sbjct: 172 GGEFYTPSSIVNTLVAIL----------KPYANCRVYDCCCGSGGMFVQSAKFIQAHSGN 221 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQE P+T + + + IR L++D T + DL + Sbjct: 222 RG---SISIYGQEANPDTWKMAIMNLTIRGLDADLGA------YHADTFTNDLHPTLKAD 272 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + L+NPPF +D + R+ G+P S+ + ++ H+ + L Sbjct: 273 FILANPPFNYNPWGQED-------LKDDVRWKYGVPPASNANYAWIQHMIHHLAPS---- 321 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+ +VL++ L GE EIR+ ++E+DLIE I+A+P LF+ I LW ++ Sbjct: 322 GKIGLVLANGAL--SSQNGGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFITKG 379 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K ++ + I+A + + K R ++ +++ D + +NG Sbjct: 380 KKQKGKT--VFIDARKMGHMVDR---KHRDFTEEDIQKLADTIEAFQNG-----TLEDEK 429 Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + ++L +E + + L M ++ + Sbjct: 430 GFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSDMFERSHELED 488 >gi|218263901|ref|ZP_03477849.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii DSM 18315] gi|218222412|gb|EEC95062.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii DSM 18315] Length = 497 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 106/492 (21%), Positives = 187/492 (38%), Gaps = 66/492 (13%) Query: 1 MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + T + A L NF+++ + G +F I P +R+ + Sbjct: 1 MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108 A S D E + F + NL + I Sbjct: 59 ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112 Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 D + F + L + + + ++ S +L P +M + YE L+++ Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSRRKLGNKDYPADLMGDAYEILLKK 171 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + A +F TPR VV L +L P T+YDP CG+GG L +A+ Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIR 221 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 ++ D GQE A+ + + N+ QG TL Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269 Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +F ++NPPF + + ++K R G P S G ++ H Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + + +G GR A+V+ LF G E+EIR+ L+E+DLIEA+V L LF+ T Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESDLIEAVVTLGDKLFYGT 378 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460 ++ I+ K G++ +I+ + + T R + I+ ++ ++ +Y + + Sbjct: 379 GLSPCFLIIRRMKQAHHSGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 434 Query: 461 NGKFSRMLDYRT 472 +SR++ + Sbjct: 435 EEDYSRIVTLQE 446 >gi|303326058|ref|ZP_07356501.1| type I restriction-modification system, M subunit [Desulfovibrio sp. 3_1_syn3] gi|302863974|gb|EFL86905.1| type I restriction-modification system, M subunit [Desulfovibrio sp. 3_1_syn3] Length = 535 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 116/514 (22%), Positives = 195/514 (37%), Gaps = 80/514 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MTE + L +W A+ L G DF +L F LR L E + + +Y Sbjct: 1 MTE--QNQKQLGAVLWSIADTLRGAMDADDFRDYMLAFLFLRYLSDNYEVAAKKELGNEY 58 Query: 60 LA-------------FGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLE--- 101 + + D+ F K+ + EY ++ N E Sbjct: 59 PDAGTQPGVTPLRIWYAANQADVPDFEKLMRRRVHYVIKPEYLWDSIAEMARTQNGELLK 118 Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 YI SF + +F + + +S +L E+ L I K + L Sbjct: 119 TLQDGFKYIENESFDSTFQGLFSEINLTS--EKLGKRNAERNEKLCDIIKKIAE-GLSSF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F + + A +F TP ++ + + ++ + + Sbjct: 176 SSEGDTLGDAYEYLIDKFAAGSGKKAGEFYTPHEISSILSGIVTLDSQDPGTGPKKHLAS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + I +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVR-------GRMGAQGIGKIYGQEKNVTTYNLARMNMLLHGVK--- 285 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL+ D F ++NPPF +W + GE Sbjct: 286 --DSEFEIFHGDTLTNDWDMLRETNPAKKPYFDAVVANPPFSYRWNPSEA-------LGE 336 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L+ G AI+L LF G A E IRR Sbjct: 337 DVRFKNYGLAPKSAADFAFLLHGFHYLKRE----GTMAIILPHGVLFRGGA---EERIRR 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLE+ I+ I+ LP +LF+ T I + +L K + V INA++ + GK Sbjct: 390 KLLEDGNIDTIIGLPANLFYSTGIPVCVLVLKKCK---KSDDVLFINASEHFEK----GK 442 Query: 440 KRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 ++ ++ + ++I+D Y R + +S+ + Sbjct: 443 RQNRLSTEHIKKIVDTYQFRTEEERYSKCVSMEE 476 >gi|331681143|ref|ZP_08381780.1| putative type I restriction-modification system, M subunit [Escherichia coli H299] gi|331081364|gb|EGI52525.1| putative type I restriction-modification system, M subunit [Escherichia coli H299] Length = 539 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 104/562 (18%), Positives = 206/562 (36%), Gaps = 78/562 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + G ++ Sbjct: 19 LWDAANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRKKMIA----DGQADFLEMEVFY 74 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + ++++ S I + K D FS Sbjct: 75 QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNQTLKGALPDNYFSRQNL-- 132 Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L + IE + ++ +YE+ + +F + +G +F TP+ Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VV L T +L +YDP CG+ G ++ V + Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL T+ + + IR L ++ + +T D + Y L+NPPF Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291 Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 E + + RF G +P + + +++H+ +KL + G A VL Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + SGE EIR ++ENDLI+ ++ALP LF+ T I LW ++ K + Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYR 471 +G+ I+A +L T I K + + I + Y + + + + Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTTEDIATIANTYHAWRSTQEELAARIARG 456 Query: 472 TF---------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 G+ ++ + ++L + ++ ++ K Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513 Query: 522 MMQQIYPYGWAESFVKESIKSN 543 + +Q+ + +++++++ Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535 >gi|253687262|ref|YP_003016452.1| type I restriction-modification system, M subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753840|gb|ACT11916.1| type I restriction-modification system, M subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 814 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 102/483 (21%), Positives = 186/483 (38%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF + L + + I + + K++ + DF Sbjct: 45 YKGDPYGMIVIPQGTSF-----DDMVALKGDKEIGDKINKIIQKLAAENDLKSVIDVADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 +L K L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 DDE-DKLGKGKEMIDRLSKLVGIFEGLDLSGNRAEGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRILAKVI------GITPETPQDATVYDPTCGSGSLL---------LKVNDE 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 L +GQE++ T A+ M++ + + I +G+TLS + K Sbjct: 204 ARRGLSIYGQEMDNATSALARMNMILHN-------NTTAKIWKGNTLSDPQWKEANGRLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K K RF G P +G FL+H+ L+ Sbjct: 257 AFDFAVANPPFSNKN----WTSGLNPKKDPFERFVWGTPPEKNGDYTFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR L++ I+ I+ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EATIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469 R+G + +I+A+ + +G K R + +I+D++ R +SRM+ Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTVPGYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 VSE 423 >gi|15839313|ref|NP_300001.1| type I restriction-modification system [Xylella fastidiosa 9a5c] gi|9187844|gb|AAF85760.1|AE004078_12 type I restriction-modification system [Xylella fastidiosa 9a5c] Length = 382 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 111/374 (29%), Positives = 176/374 (47%), Gaps = 45/374 (12%) Query: 1 MTEFTGSAASL---ANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + + + ++FIW A+ L + + VILPFT+LRRL+ LE T+ AV Sbjct: 18 MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEGTKDAVL 77 Query: 57 EKYLAFG--GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110 E+ + AG +FYN SE++L+ L ++ R++ +Y+ FS + Sbjct: 78 ERKKFLDVHQVAEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSLD 137 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156 + I F+F + I +L + +L + ++F E++ + + M Sbjct: 138 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 197 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E LIRRF + +E A + TPRDVV L LL P + S +LYD +CGT Sbjct: 198 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 254 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG LT A + H + GQE+ ET+A+C A +L++ ++NI Sbjct: 255 GGMLTVAEEALHALAQQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 309 Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327 G STLS D F + F + +SNPP+GK W+ D + + + K RF Sbjct: 310 VGGADKSTLSADQFPSRAFDFMISNPPYGKSWKTDLERMGGK-KEFSDPRFIVSHAGNAE 368 Query: 328 ---LPKISDGSMLF 338 L + SDG +LF Sbjct: 369 FKLLTRSSDGQLLF 382 >gi|55822680|ref|YP_141121.1| type I restriction-modification system methyltransferase subunit [Streptococcus thermophilus CNRZ1066] gi|55738665|gb|AAV62306.1| type I restriction-modification system methyltransferase subunit [Streptococcus thermophilus CNRZ1066] Length = 534 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 122/595 (20%), Positives = 216/595 (36%), Gaps = 94/595 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51 M+E T ++ SL +W +A+ L D+ +L + L + E T Sbjct: 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60 Query: 52 R--SAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105 Y + E + S+ + + + L + LE Sbjct: 61 ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120 Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F SD +FED D S +L ++ + + K + +++ + Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F ++ + A +F TP+ V L T + + TLYD T Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + P +V GQEL T+ + M++ + + + Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 + TL +D F L NPP+ KW ++ RF P L Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E IR+ LLE I+ + Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++FF T++ T + IL +T V I+A+ + GK + I+ D Sbjct: 386 IGLPANIFFNTSVPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +IL+ Y SRE+ + + + + + ++ + Sbjct: 439 KILNAYKSREDID---------------------KFAHLASFEEIVENDYNLNIPRYVDT 477 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564 + ++ L ++ +I S+ + + AF+ AF Sbjct: 478 FEEEEVEPLTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEADEELKAFVKAF 532 >gi|71904274|ref|YP_281077.1| type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS6180] gi|306826650|ref|ZP_07459954.1| type I restriction-modification system DNA-methyltransferase [Streptococcus pyogenes ATCC 10782] gi|71803369|gb|AAX72722.1| type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS6180] gi|304431177|gb|EFM34182.1| type I restriction-modification system DNA-methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 526 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 120/502 (23%), Positives = 196/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L E++ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLFAVCDNLEEHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ + + V G Y + L + LES Sbjct: 58 NTFTDAQKIFENAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGWED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + ++ L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|331017721|gb|EGH97777.1| N-6 DNA methylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 533 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 115/559 (20%), Positives = 197/559 (35%), Gaps = 71/559 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------PTRSA 54 ++ +W A L G ++ +L L+ + + P+ Sbjct: 2 TSEEFKKTLWDTANKLRGSVSAAEYKYPVLGLVFLKYVSDLYDTQAGVIQDRLADPSSEL 61 Query: 55 VRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 E + A + + F+ +E TL + N + A Sbjct: 62 YIEDAELRAESAAIFVEDKTFFTQDNVFWVPAEAKFETLLQSAAAANFAQLLDK----AM 117 Query: 113 AIFEDFDFS------STIARLE-KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIR 164 + E + S +RLE + G L ++ + + ++ P V +YE+ + Sbjct: 118 GLIESENLSLKGVLYREFSRLELEPGKLGELFELIAKLKFDPKEHGSRDVFGEVYEYFLG 177 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 +F A +F TP+ +V L +L T+YDP CG+GG + Sbjct: 178 QFALNEGARAGEFYTPKSLVSLLVEILA-----------PFKGTIYDPACGSGGMFVQSA 226 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 L +GQE ET +C+ + + L+ + + GST + Sbjct: 227 KFKDAHAKQLGSKGDLPIYGQEKMAETRRLCLMNLAVHGLDGNIGQT------YGSTFTN 280 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D R Y L+NPPF + + K R+ G+P + + +L H+ Sbjct: 281 DQHKTLRADYILANPPFNISDWEGE-------KLKGDPRWAHGIPPKGNANYAWLQHILA 333 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 +L GRA +VL++ + SGE +IR+ ++ D++E +VALP LF T I Sbjct: 334 RLSSR----GRAGVVLANGSMST--QQSGEDKIRQSMVIKDVVECMVALPGQLFSNTQIP 387 Query: 405 TYLWILSNRKTEERRGK------VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 LW LS K GK + I+A + +K+ +D I Y Sbjct: 388 ACLWFLSKDKRIGPNGKTDRSSQILFIDARK--ATSGRISRKQVEFTEDDMEGIAQTYHR 445 Query: 459 RENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 N FS D F Y + FIL E + + L Sbjct: 446 WRNTVFSDGEGYEDIPGFCYSA-SFEDVQKHGFILTPGRYVGAE---SVEEDDQLFSDKL 501 Query: 516 LDILKPMMQQIYPYGWAES 534 +++ + +QI E Sbjct: 502 NHLIEQLGEQIAERNAIEK 520 >gi|255690135|ref|ZP_05413810.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] gi|260624419|gb|EEX47290.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] Length = 497 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 105/492 (21%), Positives = 187/492 (38%), Gaps = 66/492 (13%) Query: 1 MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + T + A L NF+++ + G +F I P +R+ + Sbjct: 1 MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108 A S D E + F + NL + I Sbjct: 59 ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112 Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 D + F + L + + + ++ S +L P +M + YE L+++ Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRKLGNKDYPADLMGDAYEILLKK 171 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + A +F TPR VV L +L P T+YDP CG+GG L +A+ Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIR 221 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 ++ D GQE A+ + + N+ QG TL Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269 Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +F ++NPPF + + ++K R G P S G ++ H Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + + +G GR A+V+ LF G E+EIR+ L+E++LIEA+V L LF+ T Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESNLIEAVVTLGDKLFYGT 378 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460 ++ I+ K G++ +I+ + + T R + I+ ++ ++ +Y + + Sbjct: 379 GLSPCFLIIRRMKQAHHSGRILMIDGSQILTQKRA----QNILEENDIDRLYSLYQNYSD 434 Query: 461 NGKFSRMLDYRT 472 +SR++ + Sbjct: 435 EEDYSRIVTLQE 446 >gi|260776279|ref|ZP_05885174.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio coralliilyticus ATCC BAA-450] gi|260607502|gb|EEX33767.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio coralliilyticus ATCC BAA-450] Length = 519 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 106/524 (20%), Positives = 199/524 (37%), Gaps = 68/524 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------YLAFGGSNID 68 +W A L G+ DF IL + L L + + A I+ Sbjct: 13 LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGITFVAAADDKELIN 72 Query: 69 LESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 V ++ + S+L + L+ +A + A DF+ Sbjct: 73 DLREECVENLGYFIAPKQLFSSLAGRGKKQEFIVDELDRTLADIEQSTTAADSADDFNGL 132 Query: 124 IARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 L+ + L+ ++ + I+ H + ++ + YE+LI +F S Sbjct: 133 FEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASGAG 192 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP+ V + L+ G ++++YDPTCG+G L V Sbjct: 193 KKAGEFYTPQQVSKILAKLVSLD---------GNVKSVYDPTCGSGSLLLRVAREVGSHN 243 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 GQE P T+ + ML+ + D +I+ TL + +R Sbjct: 244 LE--------FCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLEQR 290 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F ++NPPF W ++ + E L S F++H+ ++L N Sbjct: 291 FDAVVANPPFSANWSANELHLNSERFADY-----GKLAPKSKADFAFVLHMIHQL----N 341 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLWIL 410 G A+V+ LF G A E IR+ L+E + ++A++ LP +FF T+I T + + Sbjct: 342 ETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIFFGTSIPTCILVF 398 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469 +K + V I+A++ + GK + + ++ +I++ Y RE+ + F+ + Sbjct: 399 --KKNRKNDDNVLFIDASNHFEK----GKAQNFMRNEDVERIVEAYRKRESVEKFAHVAK 452 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + P ++ ++ D + L+ L Sbjct: 453 LTEVEENDYNLNIP---RYVDTFEEEEPVDLDAVAQDLASLETK 493 >gi|260768976|ref|ZP_05877910.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio furnissii CIP 102972] gi|260617006|gb|EEX42191.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio furnissii CIP 102972] Length = 514 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 99/475 (20%), Positives = 180/475 (37%), Gaps = 68/475 (14%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G+ DF IL + L L + + D + + Sbjct: 13 LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGVTFVGAADDQELIH 72 Query: 75 V------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-------DFDFS 121 ++ + S+L + + I I + DF+ Sbjct: 73 ELREECVENLGYFIAPKQLFSSLAARGQKQEFI--IDELDRVLADIEQSTTTADSADDFN 130 Query: 122 STIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 L+ + L+ ++ + I+ H + ++ + YE+LI +F S Sbjct: 131 GLFEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASG 190 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP+ V + L+ G ++++YDPTCG+G L V Sbjct: 191 AGKKAGEFYTPQQVSKILAKLVSLD---------GNVKSVYDPTCGSGSLLLRVAREVGS 241 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 GQE P T+ + ML+ + D +I+ TL + Sbjct: 242 HNLE--------FCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLE 288 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 KRF ++NPPF W ++ + E L + F++H+ ++L Sbjct: 289 KRFDAVVANPPFSANWSANELHLNSERFADY-----GKLAPKTKADFAFVLHMIHQL--- 340 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLW 408 N G A+V+ LF G A E IR+ L+E + ++A++ LP +FF T I T + Sbjct: 341 -NETGTLAVVVPHGILFRGAA---EGHIRQHLIEKKNYLDAVIGLPAGIFFGTGIPTCIL 396 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + +K + V I+A++ + GK + + D +I++ Y RE+ + Sbjct: 397 VF--KKNRKHADNVLFIDASNHFEK----GKAQNFMRDADVERIVEAYSKRESVE 445 >gi|296110699|ref|YP_003621080.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154] gi|295832230|gb|ADG40111.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154] Length = 514 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 103/550 (18%), Positives = 205/550 (37%), Gaps = 59/550 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-----CALEPTRS-- 53 MTE T +L +W +A L G +++ +L R L ++ T Sbjct: 1 MTENTSK--TLEQALWNSANVLRGKMDASEYKNYLLGLIFYRFLSHKTMAAVIDATGEIG 58 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFS 108 Y + D F + +L + ++L++ + + Sbjct: 59 DPIAIYKQYWQDQRDDIIAELYTANGFIIQPDELFDSLVTRIQNHQFQVSDLKTALFNLE 118 Query: 109 DNAKAIFEDFDFSSTIARLE-KAGLLYK-----ICKNFSGIELHPDTVPDRVMSNIYEHL 162 + K + DF + ++ + L K + + ++ V+ + YE+L Sbjct: 119 QSVKGHKSEDDFEGLFSDIDLDSNRLGKNPSQVMNDTITALKDIDFDSDRDVLGDAYEYL 178 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I F + A +F TPR V + ++ + IR++YDP G+G L Sbjct: 179 ISEFAMSAGKKAGEFYTPRTVSEIIARIVAKGHED----GDNQIRSVYDPAMGSGSLLLT 234 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + HGQEL T + +++ + + +++ G TL Sbjct: 235 VA-------GQVTGNKTIAYHGQELNTTTFNLARMNLMLHGVSFEDI-----HVRNGDTL 282 Query: 283 SKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 D +F + NPP+ W D+ + + L S FL+ Sbjct: 283 DNDWPAQEPYQFDAVVMNPPYSAHWNNDESRLSEPRFRDY-----GKLAPKSKADYAFLL 337 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H L+ G IVL LF G A E +IR+ L+++++I+A++ LP ++F+ Sbjct: 338 HGLYHLKPS----GTMGIVLPHGVLFRGAA---EGKIRQQLIDSNMIDAVIGLPANIFYS 390 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + IL K + V I+A + +T GK + +++++ +I+ Y R+ Sbjct: 391 TSIPTVILILKKNKATK---DVLFIDAINQFTK----GKNQNVLSEENIDKIVSTYDKRQ 443 Query: 461 NGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + + ++ + + P R ++ LEA K + + Sbjct: 444 DVEKYAHVALIDEIKENDYNLNIP-RYVDTFEEEEPIDLEAVRQQLKQDDIEIQKLEKEI 502 Query: 520 KPMMQQIYPY 529 + ++++ Sbjct: 503 EETLKELGVK 512 >gi|310780626|ref|YP_003968957.1| type I restriction-modification system, M subunit [Ilyobacter polytropus DSM 2926] gi|309749949|gb|ADO84609.1| type I restriction-modification system, M subunit [Ilyobacter polytropus DSM 2926] Length = 513 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 117/544 (21%), Positives = 210/544 (38%), Gaps = 70/544 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----- 58 + L +W A +L G+ +F IL F + L +E E Sbjct: 1 MSEHKQELEKRLWAIANELRGNMGADEFRDYILGFIFFKFLSEKMENFAKKELEVEGISF 60 Query: 59 ---------YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNLESYI 104 ++ + + F+N S + + ES + Sbjct: 61 ADAVKDPEIMEDLKEEAMESLGYFIEPRHLFHNIAARARSREMIIEDLIKAMKEVEESAL 120 Query: 105 ASFSD-NAKAIFEDFDFSST--IARLEKAGLL-YKICKNFSGIELHPDTVPDRVMSNIYE 160 S+ + +FED D +ST +E+ L ++ K+ I + V+ + YE Sbjct: 121 GHESEQDFTGLFEDVDLTSTKLGRTVEQKNRLISEVIKHLDEINFKFEDTEMDVLGDAYE 180 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI F S + A +F TP+ V + L+ + I+T+YDPTCG+G L Sbjct: 181 YLIGEFASGAGKKAGEFYTPQQVSKILAKLVTLGKE--------KIKTVYDPTCGSGSLL 232 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + + +GQEL T+ + M++ ++ I+QG Sbjct: 233 LRVS----------RESDVSFFYGQELNTTTYNLARMNMILH-----DKKFSDFEIEQGD 277 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLF 338 TL KRF ++NPPF KW ++ + E RF L + F Sbjct: 278 TLEDPHHLDKRFEAVVANPPFSAKWSANQTFLSDE-------RFSAYGKLAPKTKADFAF 330 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397 + H+ ++L + G A VL LF G A E IR++L+E + ++A++ LP ++ Sbjct: 331 VQHMIHQL----DENGTMATVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANI 383 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T+I T + + +K E V I+A++ + +N + + D+ +I+D Y Sbjct: 384 FYGTSIPTCVLVF--KKCRENPENVLFIDASNYFEKAKN----QNYLRDEDVERIIDTYR 437 Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 +R + FS + + P + ++ + E + L S Sbjct: 438 NRTEIEKFSHVATMAEIKENDYNLNIPRYVDTFEEEEPVDLAEVAKAIKALDKDILSIDE 497 Query: 517 DILK 520 +I K Sbjct: 498 EIKK 501 >gi|55820777|ref|YP_139219.1| type I restriction-modification system methyltransferase subunit [Streptococcus thermophilus LMG 18311] gi|55736762|gb|AAV60404.1| type I restriction-modification system methyltransferase subunit [Streptococcus thermophilus LMG 18311] Length = 534 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 123/595 (20%), Positives = 216/595 (36%), Gaps = 94/595 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51 M+E T ++ SL +W +A+ L D+ +L + L + E T Sbjct: 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60 Query: 52 R--SAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105 Y + E + S+ + + + L + LE Sbjct: 61 ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120 Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F SD +FED D S +L ++ + + K + +++ + Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F ++ + A +F TP+ V L T + + TLYD T Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + P +V GQEL T+ + M++ + + + Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 + TL +D F L NPP+ KW ++ RF P L Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E IR+ LLE I+ + Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++FF T+I T + IL +T V I+A+ + GK + I+ D Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +IL+ Y SRE+ + + + + + ++ + Sbjct: 439 KILNAYKSREDID---------------------KFAHLASFEEIVENDYNLNIPRYVDT 477 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564 + ++ L ++ +I S+ + + AF+ AF Sbjct: 478 FEEEEVEPLTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEADEELKAFVKAF 532 >gi|298693765|gb|ADI96987.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Staphylococcus aureus subsp. aureus ED133] Length = 518 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADGEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|19746827|ref|NP_607963.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes MGAS8232] gi|19749065|gb|AAL98462.1| putative type I site-specific deoxyribonuclease [Streptococcus pyogenes MGAS8232] Length = 526 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 120/502 (23%), Positives = 197/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L +++ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLDQHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ ++ + V G Y + L + LES Sbjct: 58 NTFTDAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 FS ++ + +FED D S +L ++ + + K + I + V Sbjct: 118 GFSDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIGF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + ++ L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|257424551|ref|ZP_05600980.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427217|ref|ZP_05603619.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257429853|ref|ZP_05606240.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus 68-397] gi|257432557|ref|ZP_05608920.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus E1410] gi|257435461|ref|ZP_05611512.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M876] gi|282903019|ref|ZP_06310912.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C160] gi|282907408|ref|ZP_06315256.1| type I restriction-modification system M subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282912639|ref|ZP_06320435.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913267|ref|ZP_06321059.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M899] gi|282922895|ref|ZP_06330585.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C101] gi|283959867|ref|ZP_06377308.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293498314|ref|ZP_06666168.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509255|ref|ZP_06667972.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M809] gi|293550522|ref|ZP_06673194.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M1015] gi|295426965|ref|ZP_06819604.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus EMRSA16] gi|257273569|gb|EEV05671.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257276848|gb|EEV08299.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257280334|gb|EEV10921.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus 68-397] gi|257283436|gb|EEV13568.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus E1410] gi|257286057|gb|EEV16173.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M876] gi|282315116|gb|EFB45502.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C101] gi|282323367|gb|EFB53686.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M899] gi|282324335|gb|EFB54651.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282330307|gb|EFB59828.1| type I restriction-modification system M subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282597478|gb|EFC02437.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C160] gi|283789459|gb|EFC28286.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290919569|gb|EFD96645.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M1015] gi|291097245|gb|EFE27503.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467894|gb|EFF10403.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M809] gi|295129417|gb|EFG59044.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus EMRSA16] Length = 525 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 16 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 75 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 76 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 134 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 135 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 194 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 195 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 246 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + GQE T+ + ML+ + R + +I+ T Sbjct: 247 RVGKEAK----------VYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 291 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 292 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 346 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 347 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 399 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 400 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 453 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 454 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 512 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 513 NAYLKELGVLKD 524 >gi|158520268|ref|YP_001528138.1| type I restriction-modification system, M subunit [Desulfococcus oleovorans Hxd3] gi|158509094|gb|ABW66061.1| type I restriction-modification system, M subunit [Desulfococcus oleovorans Hxd3] Length = 808 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 93/474 (19%), Positives = 177/474 (37%), Gaps = 60/474 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + ++L G + + +L ++ + + Sbjct: 1 MALKKSELYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISD--------------KYA 46 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSS 122 S+ G SF + + + + I S S A++ F DF+ + Sbjct: 47 ASDDYAPPVTIPRGASFQDMVKLKGKSDIGDKINTQIIQPLIDSNSRLARSDFPDFNDPN 106 Query: 123 TIARLEK-AGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + L + F EL D ++ + YE+L+R F E + F Sbjct: 107 KLGEGKAMVDRLTNLISIFQKPELDFSKNRADHDDILGDAYEYLMRHFAQESGKSKGQFY 166 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V + ++ T YDPTCG+G L + Sbjct: 167 TPSEVSRIIAKVIGISPQKAV-----ASTTAYDPTCGSGSLL---------LKVAAEAGK 212 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294 + GQE + T + M++ + NI G+TL+ F + + + Sbjct: 213 HITLEGQEKDVTTAGLARMNMILH-------DFPTANILNGNTLASPKFKDGEKLRTYDF 265 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF K +N RF G+P G +L+H+ ++ G Sbjct: 266 VVANPPFSDKTWSTGLTS----ENDPYQRFEWGVPPAKQGDYAYLLHIIRSMKST----G 317 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA +L LF G A E+ IR+ L+ + ++ I+ LP +LF+ T I + +L Sbjct: 318 KAACILPHGVLFRGNA---ENVIRKRLVRSGYLKGIIGLPANLFYGTGIPACILVLDKEN 374 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 R+G + +I+A+ + +G K R + + +I+D + + + Sbjct: 375 ATARKG-IFMIDASRGFI---KDGNKNR-LREQDIHKIVDTFRKQAETPRYARM 423 >gi|227533895|ref|ZP_03963944.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188457|gb|EEI68524.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 532 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 102/492 (20%), Positives = 194/492 (39%), Gaps = 73/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52 M + T +L +W +A+ L +++ +L + L LE Sbjct: 1 MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58 Query: 53 SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107 + + + A+ ++ + V+ Y+ + + L + + Sbjct: 59 TDLDKAQQIYTDAYDDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116 Query: 108 SDNAKAIFEDFDFSSTI--------ARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 S + + I + +F S + +L ++ ++ + K S ++L + + Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQN-TNDI 175 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F S+ + A +F TP+ V L T + + + + T+YDPT Sbjct: 176 LGDAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDPTM 229 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + GQEL T+ + M++ + + ++ Sbjct: 230 GSGSLLLNARRY-------SNERLSINYFGQELNTSTYNLARMNMILHGVPIN-----NQ 277 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKI 331 ++ TL +D F + NPP+ W K RF GL Sbjct: 278 HLHNADTLDQDWPIEEPTNFDAVVMNPPYSAHWRPSKGTEN-------DPRFVSYGLAPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G IVL LF G A E IR+ LLEN I+ ++ Sbjct: 331 SKADFAFLLHGYYHLKDT----GVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVI 383 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP ++FF T+I T + +L K V I+A+ + +N + + D ++ Sbjct: 384 GLPANIFFNTSIPTTVTVL---KKSRTTRDVLFIDASKEFEKAKN----QNHLTGDNIQK 436 Query: 452 ILDIYVSRENGK 463 IL+ Y++R++ Sbjct: 437 ILETYINRKDVD 448 >gi|253735165|ref|ZP_04869330.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|253726829|gb|EES95558.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 518 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 121/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYL 60 A L +W A DL G+ ++F IL R L E S Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYSDALAGEDIAYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|89890210|ref|ZP_01201720.1| type I restriction-modification system methyltransferase [Flavobacteria bacterium BBFL7] gi|89517125|gb|EAS19782.1| type I restriction-modification system methyltransferase [Flavobacteria bacterium BBFL7] Length = 551 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 101/503 (20%), Positives = 187/503 (37%), Gaps = 83/503 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M+E L +W A DL G+ DF IL F + L +E + + + Sbjct: 1 MSEE-EKQQILKQTLWNIANDLRGNMDADDFRDYILGFIFYKYLSRKMELYANVILQPDG 59 Query: 58 ------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + + ++ + + ++ S L N ++I N Sbjct: 60 LDYGTVEQHSQADELLEAIRYEALDKLGYFLKPSELFSELAKRGNSGNKNNFILGDLANV 119 Query: 112 KAIFED--------FDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVP 151 E DF + L+ K L+ K+ + GI+ + Sbjct: 120 LTSIEQSTMGSESEDDFGNLFEDLDLTSSKLGKTEDAKNELIVKVLTHLEGIDFDLENSD 179 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 ++ + YE+LI +F S + A +F TP+ V + L+ ++++YD Sbjct: 180 SDILGDAYEYLIGQFASGAGKKAGEFYTPQQVSKILAQLVTTNK--------TKLKSVYD 231 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L V + G +GQE P T+ +C M++ + Sbjct: 232 PTCGSGSLLLRVAKEVKEVGE---------FYGQESNPTTYNLCRMNMIMHDVH-----Y 277 Query: 272 LSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 +I TL KRF ++NPPF W + + + L Sbjct: 278 KRFDIYNEDTLVNPSPNHLDKRFEAIVANPPFSANWSASPLFMSDDRFSDY-----GKLA 332 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIE 388 S F+ H+ ++L + G A VL LF G A E IR++L+E + ++ Sbjct: 333 PKSKADFAFVQHMIHQL----DDNGTMATVLPHGVLFRGAA---EGHIRKFLIEEKNYLD 385 Query: 389 AIVALPTDLFFRTNIATYLWILSN------------RKTEERRGKVQLINATDLWTSIRN 436 A++ LP ++F+ T+I T + +L K +R + I+A+ + ++ Sbjct: 386 AVIGLPANIFYGTSIPTCILVLKKDRACHTEPVEVHDKKLKREETILFIDASAHFEKVKT 445 Query: 437 EGKKRRIINDDQRRQILDIYVSR 459 + ++ + +I+ Y + Sbjct: 446 ----QNVLLPEHIDKIITTYRNY 464 >gi|21282121|ref|NP_645209.1| type I site-specific deoxyribonuclease LldI chain hsdM [Staphylococcus aureus subsp. aureus MW2] gi|300911069|ref|ZP_07128518.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus TCH70] gi|21203557|dbj|BAB94257.1| probable type I site-specific deoxyribonuclease LldI chain hsdM [Staphylococcus aureus subsp. aureus MW2] gi|300887248|gb|EFK82444.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus TCH70] Length = 518 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + + D Q +I++ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQEDYVLFIDASNDFEK----GKNQNHLTDAQVERIINTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|325982846|ref|YP_004295248.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosomonas sp. AL212] gi|325532365|gb|ADZ27086.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosomonas sp. AL212] Length = 549 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 97/575 (16%), Positives = 184/575 (32%), Gaps = 88/575 (15%) Query: 1 MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + L +WK A L + ++ V+L L+ + A E EK Sbjct: 1 MAKTKAIKTEPLEKQLWKAACKLQKNIDAAEYKHVVLGLMFLKYISDAFEELHDR-LEKG 59 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAK 112 + A F+ +E L + + ++ I + + K Sbjct: 60 EGDLVGADPEDKDEYRAENVFFVPAESRWPHLVAHARQPDIGTHVDAAMDAIEKENPSLK 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171 + + L ++ I L V+ +++E+ + F Sbjct: 120 GVLPKVYARQNL----DPTSLGELIDLIGNIALGDAKARSQDVLGHVFEYFLGEFALAEG 175 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TPR +V L +L ++DP CG+GG + V + Sbjct: 176 KQGGQFYTPRSIVELLVNML-----------EPYQGRVFDPCCGSGGMFVQSEKFVEEHQ 224 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T + + IR ++S + ++ + D + Sbjct: 225 GRID---DISIYGQESNQTTWRLAKMNLAIRGIDSSQVKWNNEG-----SFLNDAHKDLK 276 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + ++NPPF + + R+ G P + + +L H L Sbjct: 277 ADFIIANPPFNVSDWSGE-------QLRGDARWQYGTPPPGNANFAWLQHFIYHLSPT-- 327 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410 G A +VL+ L + SGE +IR+ L+ + +LI+ IV LP LF T I LW L Sbjct: 328 --GIAGVVLAKGALTS--KTSGEGDIRKRLITDGNLIDCIVNLPAKLFLNTQIPAALWFL 383 Query: 411 SNRKT--------------------------------EERRGKVQLINATDLWTSIRNEG 438 + + R ++ I+A +L I Sbjct: 384 NRNRAGMDIGGHAKTIVGANNHLPLQNPPQQNPPQYHHPRTHEILFIDARNLGHLINRRT 443 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-----FGYRR-IKVLRPLRMSFILDK 492 K ++ D +QI + Y + N G+ + V R + ++L Sbjct: 444 K---ELSHDDIQQIANTYHAWRNPAVIPAQTGIQPYEDIKGFCASVPVERVAELDYVLTP 500 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 L + + + + +++ Sbjct: 501 GRYVGLPDEEDDFNFPERFAALKAEFEAQLQEEVA 535 >gi|254438740|ref|ZP_05052234.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307] gi|198254186|gb|EDY78500.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307] Length = 911 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 191/485 (39%), Gaps = 76/485 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + + +W + + L G + + +L ++ + Sbjct: 1 MAVKKSEIYSSLWASCDALRGGMDASQYKDYVLVLLFVKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 + G SF + L + + I+ ++ + K + + DF Sbjct: 45 YAGDPDGLIEIPEGGSF-----ADMVALKGDKEIGDKINVIISRLAEANDLKGVIDVADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + +L L + F+ EL + D ++ + YE+L+R F +E + Sbjct: 100 NEE-EKLGTGKEMVDRLSNLIAIFNRPELDFRNNRAEGDDILGDAYEYLMRHFATEAGKS 158 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP +V + + S +T+YDPTCG+G L A + Sbjct: 159 KGQFYTPAEVSRIMAKAI------GISASNRPDQTIYDPTCGSGSLLLKARD-------- 204 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 + P + +GQE + T A+ M++ D + I + +TL+ F Sbjct: 205 -EAPAGITIYGQEKDVATRALAKMNMVLH-------DDPTAEIWRDNTLASPHFKNDTGG 256 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 K F + ++NPPF K + + N + RFG G+P +G +L+H+ L+ Sbjct: 257 LKTFDFVVANPPFSDK----AWSTGLDPVNDQYDRFGYGVPPAKNGDYAYLLHIVASLKT 312 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ A++L LF G A ESEIR ++ I+ I+ LP +LF+ T I + Sbjct: 313 T----GKGAVILPHGVLFRGNA---ESEIREKIIRKGYIKGIIGLPANLFYGTGIPACII 365 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467 ++ + R G + +++A+ + +G K R + +I+D + + K+SRM Sbjct: 366 VIDKENAQARTG-IFMVDASKGFV---KDGNKNR-LRSQDLHKIVDAFTKQIEIDKYSRM 420 Query: 468 LDYRT 472 + Sbjct: 421 VPLAE 425 >gi|312870866|ref|ZP_07730971.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LEAF 3008A-a] gi|311093556|gb|EFQ51895.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LEAF 3008A-a] Length = 502 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 95/540 (17%), Positives = 198/540 (36%), Gaps = 60/540 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + +W A LWG ++ +VI+ LR + A + + + Sbjct: 1 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + F+ E T+ +N I + + K Sbjct: 59 ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S +A+ +L + F+ I++ + ++ YE+ I +F + + Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YD CG+GG + + Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR +++D + T + DL + Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + K + R+ G P + + ++ H+ + L Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L GE EIR+ ++E+DLIE I+++P+ LF+ ++ LW ++ Sbjct: 322 NGKIGLVLANGAL--SSQKCGEGEIRQKIIEDDLIEGIISMPSKLFYSVTLSVTLWFITK 379 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K ++ + I+A + + R +++ +++ + +NG Sbjct: 380 GKKQKGKT--LFIDARHMGHMVDQS---HRDFSEEDIQKLTTTFEKFQNG-----TLENV 429 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + +IL +E + + L M ++ + Sbjct: 430 KGFCYVATTKDIAKQDYILTPGRYVGIEDQEDDGEPFDEKMTRLTSELSEMFKKSHKLED 489 >gi|283469726|emb|CAQ48937.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus ST398] Length = 518 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|139474406|ref|YP_001129122.1| type I restriction-modification system M protein [Streptococcus pyogenes str. Manfredo] gi|134272653|emb|CAM30920.1| type I restriction-modification system M protein [Streptococcus pyogenes str. Manfredo] Length = 526 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 121/502 (24%), Positives = 196/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L EK+ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ + + V G Y + L + LES Sbjct: 58 NTFTEAQKIFEDAYQDQGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + ++ L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|284108344|ref|ZP_06386408.1| Type I restriction-modification system, M subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829905|gb|EFC34191.1| Type I restriction-modification system, M subunit [Candidatus Poribacteria sp. WGA-A3] Length = 545 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 123/560 (21%), Positives = 212/560 (37%), Gaps = 67/560 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------R 56 + SL ++IW A + G + ILP +RL + + + R Sbjct: 17 NTEANDKSLESWIWDAACSIRGAKDAPKYKDYILPLIFAKRLCDVFDDELNRIATEVGSR 76 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLESY---IA 105 EK ++ + K A FY +S+ S + ++ IA Sbjct: 77 EKAFQLVVADWRRVADKKKAMVRFYLPLMPKDTEQPVWSVIRKLSDKIGEGVTTHMREIA 136 Query: 106 SFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 + K I + DF++T R L + + S L V ++ YE+LI Sbjct: 137 RENPLLKGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLADVEADIIGKSYEYLI 196 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F + A +F TP +V + +L +P +YDPTCG+GG L Sbjct: 197 RKFAEGSGQSAGEFYTPGEVGEIMARVL----------APDPGMEIYDPTCGSGGLLIKC 246 Query: 224 MNHVADCGSHHKIPPIL----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + K GQE PET A+ M+I +E I+ G Sbjct: 247 ELAMEAKVKAAKKTKDAPLPLKLFGQEYVPETWAMANMNMIIHDMEG--------QIEIG 298 Query: 280 STLSKDLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKI 331 T F ++ F ++NP + + +E ++ N EL RF G G P Sbjct: 299 DTFKNPRFRAEKSGKLRTFDRVVANPMWNQD-----SYIEADYDNDELDRFPAGAGFPGK 353 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIE 388 S ++ H+ L GRAA+VL + G +G E +R+W ++ DLIE Sbjct: 354 SSADWGWVQHMHASLNDK----GRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDQDLIE 409 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 +++ LP +LF+ T + L+ K R+GK+ L+NA+ ++ G + I + Sbjct: 410 SVLYLPENLFYNTTAPGIVLFLNKAKPRARQGKIFLVNASQVFEK----GDPKNFIPPEG 465 Query: 449 RRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 +I I + + + SR++ + + P R + L + Sbjct: 466 IARIAGILIKWKEEEKLSRIVAHAELKKNDYNI-SPSRYIHTGEAEAYRPLAEIVADLDA 524 Query: 508 SPLHQSFWLDILKPMMQQIY 527 L+ ++++I Sbjct: 525 IEEEAKETDRALREILERIG 544 >gi|15675719|ref|NP_269893.1| putative type I site-specific deoxyribonuclease [Streptococcus pyogenes M1 GAS] gi|71911436|ref|YP_282986.1| type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS5005] gi|13622937|gb|AAK34614.1| putative type I site-specific deoxyribonuclease [Streptococcus pyogenes M1 GAS] gi|71854218|gb|AAZ52241.1| type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS5005] Length = 526 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 121/502 (24%), Positives = 197/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L EK+ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ + + V G Y + L + LES Sbjct: 58 NTFTEAQKIFEDAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + ++ L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPINFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D+ + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDNHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|241763494|ref|ZP_04761547.1| N-6 DNA methylase [Acidovorax delafieldii 2AN] gi|241367335|gb|EER61666.1| N-6 DNA methylase [Acidovorax delafieldii 2AN] Length = 516 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 96/538 (17%), Positives = 191/538 (35%), Gaps = 62/538 (11%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------EKYL 60 + +W A+ L + ++ ++L ++ + R+ + ++Y Sbjct: 2 LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTARLTNPDDEYF 61 Query: 61 AFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLES-------YIASFS 108 D+E+ ++ Y F+ L + + ++ I + + Sbjct: 62 YGDADPADIEAELEDRDYYKEVNVFWVPEGARWEALRNAAKQPDIGKRIDDALTLIEAEN 121 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167 K I + + + G L ++ S I D + V+ +YE+ + F Sbjct: 122 PKLKGILDKRYARAQLPD----GKLGELVDLVSTIGFGEDAAIARDVLGQVYEYFLGMFA 177 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + F TP +V A+L + +YDP CG+GG + + Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAILSPHEG-----------KVYDPCCGSGGMFVQSEKFI 226 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + +GQE P T + + IR ++ + R+ + T +++ Sbjct: 227 EAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDYNLGREPA------DTFTRNQH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 R Y L+NPPF R+ G P + + +L H+ + L+ Sbjct: 278 PDLRADYILANPPFNIS-------DWWHGSLEGDPRWEFGDPPHGNANYAWLQHMLHHLK 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GRA IVL++ + + + E IR +++ D++E +VALP LFF T I L Sbjct: 331 PT----GRAGIVLANGSMSSS--QNNEGVIRAAMVDADVVEVMVALPGQLFFNTQIPACL 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 W L+ +K +G+V I+A I + + D+ +I + + + Sbjct: 385 WFLAKQKAR--KGEVLFIDARKQGRMISRV---QAELTDETIARIEAVVAAWRGEPGAGS 439 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + R + + + +L E + + L M + Sbjct: 440 YEDVKGFCRSVPLAEIAQHGHVLTPGRYVGAEEVEDDDEAFADKMQKLTEKLGEQMAK 497 >gi|49482660|ref|YP_039884.1| type I restriction enzyme modification protein [Staphylococcus aureus subsp. aureus MRSA252] gi|297588824|ref|ZP_06947465.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus MN8] gi|49240789|emb|CAG39454.1| putative type I restriction enzyme modification protein [Staphylococcus aureus subsp. aureus MRSA252] gi|297577335|gb|EFH96048.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus MN8] gi|312436477|gb|ADQ75548.1| type I restriction-modification system DNA-methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315193171|gb|EFU23570.1| putative type I restriction enzyme modification protein [Staphylococcus aureus subsp. aureus CGS00] Length = 518 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVGKEAK----------VYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|307711302|ref|ZP_07647723.1| type I restriction-modification system, M subunit [Streptococcus mitis SK321] gi|307616953|gb|EFN96132.1| type I restriction-modification system, M subunit [Streptococcus mitis SK321] Length = 533 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 106/494 (21%), Positives = 189/494 (38%), Gaps = 76/494 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------------AL 48 M++ S L +W A+ L G + ++ +L + L Sbjct: 1 MSQTDLSR-ELYQSLWNAADILRGQMEANEYKSYLLGLIFYKYLSDNILQAVCDNLDETF 59 Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS---------TNTRN 98 E + A F +++ + + Y + + L + Sbjct: 60 ESFQQAQLLYEENFADADVSEDLIEVLNDDLGYVIEPSLTFTKLVQSIHEGTFQLESLAQ 119 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDR 153 + I ++ + +FED D + +L + ++ K + + + Sbjct: 120 SFRD-IEQANEKFENLFEDIDLYAK--KLGNTPQKQNKTISEVMKQLNDLNV--SGHAGD 174 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ + YE+LI +F S+ + A +F TP+ V HL T ++ + ++YDPT Sbjct: 175 ILGDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVFAGREH------QKGMSVYDPT 228 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L +A + + +GQEL T + M++ + + + Sbjct: 229 MGSGSLLLNAKRYSKQAS-------TISYYGQELITSTFNLARMNMMLHGVAIENYHLSN 281 Query: 274 KNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LP 329 TL +D F L NPP+ KW D ++ RF G L Sbjct: 282 H-----DTLDEDWPTTEPTDFDGVLMNPPYSLKWSADSGFLQ-------DPRFSSYGVLA 329 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ Sbjct: 330 PKSKADFAFLLHGFYHLKHS----GVMAIVLPHGVLFRGAA---EQKIRQHLLEEGAIDT 382 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++F+ T+I T + IL +T + V I+A+ + GK + + +D Sbjct: 383 VIGLPANIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFEK----GKNQNNMTEDHI 435 Query: 450 RQILDIYVSRENGK 463 +IL+ Y REN + Sbjct: 436 AKILETYQKRENVE 449 >gi|21911180|ref|NP_665448.1| putative type I site-specific deoxyribonuclease hsdM modification subunit [Streptococcus pyogenes MGAS315] gi|28896556|ref|NP_802906.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes SSI-1] gi|21905392|gb|AAM80251.1| putative type I site-specific deoxyribonuclease hsdM modification subunit [Streptococcus pyogenes MGAS315] gi|28811810|dbj|BAC64739.1| putative type I site-specific deoxyribonuclease [Streptococcus pyogenes SSI-1] Length = 526 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 122/502 (24%), Positives = 196/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L EK+ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ ++ + V G Y + L + LES Sbjct: 58 NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFHDIEQNGEDFENLFEDIDLYSK--KLGSTPQKQNQTIANVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGCED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + F L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|302333478|gb|ADL23671.1| Type I restriction-modification system methyltransferase subunit, HsdM_2 [Staphylococcus aureus subsp. aureus JKD6159] Length = 518 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 118/545 (21%), Positives = 206/545 (37%), Gaps = 68/545 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWTDEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K+ ++ V I+A++ + GK + + D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKSRQQDDNVLFIDASNDFEK----GKNQNHLTDTQVDRIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P + ++ + + + + +I Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEEPIDLEQVQQDLKNIDKEIAEIEQEIN 506 Query: 520 KPMMQ 524 + + Sbjct: 507 AYLKE 511 >gi|94991200|ref|YP_599300.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10270] gi|94544708|gb|ABF34756.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10270] Length = 526 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 123/502 (24%), Positives = 197/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L EK+ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ ++ + V G Y + L + LES Sbjct: 58 NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + F L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + DD + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDDHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|88195628|ref|YP_500434.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258415889|ref|ZP_05682160.1| type I restriction-modification system [Staphylococcus aureus A9763] gi|258420718|ref|ZP_05683657.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9719] gi|258438383|ref|ZP_05689667.1| type I restriction-modification system [Staphylococcus aureus A9299] gi|258443827|ref|ZP_05692166.1| type I restriction-modification system [Staphylococcus aureus A8115] gi|258448234|ref|ZP_05696361.1| type I restriction-modification system [Staphylococcus aureus A6224] gi|258454237|ref|ZP_05702208.1| type I restriction-modification system, M subunit [Staphylococcus aureus A5937] gi|282893296|ref|ZP_06301530.1| type I restriction-modification system, M subunit [Staphylococcus aureus A8117] gi|282928537|ref|ZP_06336136.1| type I restriction-modification system, M subunit [Staphylococcus aureus A10102] gi|295406113|ref|ZP_06815921.1| type I restriction-modification system [Staphylococcus aureus A8819] gi|297244963|ref|ZP_06928840.1| type I restriction-modification system [Staphylococcus aureus A8796] gi|300911561|ref|ZP_07129006.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus TCH70] gi|87203186|gb|ABD30996.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257839482|gb|EEV63955.1| type I restriction-modification system [Staphylococcus aureus A9763] gi|257843322|gb|EEV67732.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9719] gi|257848427|gb|EEV72418.1| type I restriction-modification system [Staphylococcus aureus A9299] gi|257851233|gb|EEV75176.1| type I restriction-modification system [Staphylococcus aureus A8115] gi|257858473|gb|EEV81349.1| type I restriction-modification system [Staphylococcus aureus A6224] gi|257863689|gb|EEV86446.1| type I restriction-modification system, M subunit [Staphylococcus aureus A5937] gi|282589746|gb|EFB94831.1| type I restriction-modification system, M subunit [Staphylococcus aureus A10102] gi|282764614|gb|EFC04740.1| type I restriction-modification system, M subunit [Staphylococcus aureus A8117] gi|294969110|gb|EFG45131.1| type I restriction-modification system [Staphylococcus aureus A8819] gi|297178043|gb|EFH37291.1| type I restriction-modification system [Staphylococcus aureus A8796] gi|300887193|gb|EFK82393.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus TCH70] Length = 579 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 118/552 (21%), Positives = 204/552 (36%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + + I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDT 345 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y + Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKA 507 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 567 NAYLKELGVLKD 578 >gi|303244599|ref|ZP_07330932.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanothermococcus okinawensis IH1] gi|302485025|gb|EFL47956.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanothermococcus okinawensis IH1] Length = 539 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 104/579 (17%), Positives = 200/579 (34%), Gaps = 78/579 (13%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + L +W +AE L G + + ++L L+ E R + + Sbjct: 5 KKQEMLKKLEKTLWGSAEKLRGSVDPSRYKDIVLGIIFLKYASDMFEERRRELIDLSKNP 64 Query: 63 GGS----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105 + ++ ++ FY + L N+ + Sbjct: 65 KSDYYCETEDELIGLLEDNEEYISENVFYVPEQSRWDYLIKNAKNPNIAKLLDDAMILLE 124 Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYE 160 + K + + I L + F+ I D V IY Sbjct: 125 KHNSKLKGVLPKEYVRAEIPH----EKLGALLDLFNNINYKEFIENKDESIGDVFGTIYG 180 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + +R F ++ + +F TP +V L L+ + +YDP CG+GG Sbjct: 181 YFMRNFSQKLGQKGGEFFTPECIVKLLVELV-----------EPLRGRIYDPACGSGGMF 229 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + V + + L +GQEL +C + I RL D I+QG Sbjct: 230 VQSSKFVKEYLKNGNG-IDLAIYGQELNSSNVRICKMNLAIHRLSHD-------QIKQGD 281 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------D 333 TLS D + Y ++NPPF K + RF G+ + Sbjct: 282 TLSNDKHRDLKADYIITNPPFNYK-------DYDQKVLEGDVRFPYGIVPKKAENAKSGN 334 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + L++ H L + G AA ++++ L G E EIR+ ++E +++ I++L Sbjct: 335 ANFLWIQHFIYHL----SDNGIAAFIMANGSLSAGGK---EGEIRKKIIEEGIVDCIISL 387 Query: 394 PTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 P +F+ T I +W++ K R+ + I+A +++T + + +D+Q Sbjct: 388 PNKMFYTTQIPACIWVIDKNKENGRFRSRKWETLFIDAREIYTPVAR---NQNEFSDEQI 444 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++I D+Y G+ G+ ++ + +IL + + S Sbjct: 445 KKIADVYRCYR-GEDGYPDYKDEKGFCKVATIDEIREQDYILTPGRYVGIAD---VEEDS 500 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 + + K + + E +K ++ K Sbjct: 501 EPFEDKMERLTKELSEHFKKSRELEERIKNNLSELGFKA 539 >gi|57650597|ref|YP_186690.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus COL] gi|148266892|ref|YP_001245835.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH9] gi|150392937|ref|YP_001315612.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH1] gi|161510023|ref|YP_001575682.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258413472|ref|ZP_05681747.1| type I restriction-modification system [Staphylococcus aureus A9763] gi|258421404|ref|ZP_05684331.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9719] gi|258436896|ref|ZP_05689236.1| type I restriction-modification system [Staphylococcus aureus A9299] gi|258444386|ref|ZP_05692720.1| type I restriction-modification system [Staphylococcus aureus A8115] gi|258445598|ref|ZP_05693778.1| type I restriction-modification system [Staphylococcus aureus A6300] gi|258448130|ref|ZP_05696259.1| type I restriction-modification system [Staphylococcus aureus A6224] gi|258455962|ref|ZP_05703917.1| type I restriction-modification system, M subunit [Staphylococcus aureus A5937] gi|282893571|ref|ZP_06301804.1| type I restriction-modification system, M subunit [Staphylococcus aureus A8117] gi|282927465|ref|ZP_06335083.1| type I restriction-modification system, M subunit [Staphylococcus aureus A10102] gi|295405681|ref|ZP_06815491.1| type I restriction-modification system [Staphylococcus aureus A8819] gi|297245589|ref|ZP_06929457.1| type I restriction-modification system [Staphylococcus aureus A8796] gi|304378946|ref|ZP_07361711.1| type I restriction-modification system DNA-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284783|gb|AAW36877.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus COL] gi|147739961|gb|ABQ48259.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945389|gb|ABR51325.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH1] gi|160368832|gb|ABX29803.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257839719|gb|EEV64188.1| type I restriction-modification system [Staphylococcus aureus A9763] gi|257842828|gb|EEV67250.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9719] gi|257848687|gb|EEV72674.1| type I restriction-modification system [Staphylococcus aureus A9299] gi|257850645|gb|EEV74593.1| type I restriction-modification system [Staphylococcus aureus A8115] gi|257855548|gb|EEV78483.1| type I restriction-modification system [Staphylococcus aureus A6300] gi|257858645|gb|EEV81519.1| type I restriction-modification system [Staphylococcus aureus A6224] gi|257862174|gb|EEV84947.1| type I restriction-modification system, M subunit [Staphylococcus aureus A5937] gi|269941283|emb|CBI49678.1| type I restriction-modification system modification protein [Staphylococcus aureus subsp. aureus TW20] gi|282590789|gb|EFB95865.1| type I restriction-modification system, M subunit [Staphylococcus aureus A10102] gi|282764257|gb|EFC04384.1| type I restriction-modification system, M subunit [Staphylococcus aureus A8117] gi|285816131|gb|ADC36618.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Staphylococcus aureus 04-02981] gi|294969756|gb|EFG45775.1| type I restriction-modification system [Staphylococcus aureus A8819] gi|297177575|gb|EFH36826.1| type I restriction-modification system [Staphylococcus aureus A8796] gi|304342474|gb|EFM08348.1| type I restriction-modification system DNA-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312828927|emb|CBX33769.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130059|gb|EFT86048.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus CGS03] gi|329314488|gb|AEB88901.1| Type I restriction-modification system, methyltransferase subunit [Staphylococcus aureus subsp. aureus T0131] gi|329725916|gb|EGG62395.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 21172] Length = 518 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|114567766|ref|YP_754920.1| type I restriction-modification system, M subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338701|gb|ABI69549.1| type I restriction-modification system, M subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 891 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 104/504 (20%), Positives = 191/504 (37%), Gaps = 71/504 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-Y 59 M + + L +F+ K A+ L G ++F + I ++RL + R + +K + Sbjct: 1 MANEKITLSQLEHFLLKAADILRGKMDASEFKEFIFGMLFIKRLSDEFDLKRQKLIKKDF 60 Query: 60 LAFGGSNIDLESFVKVA---GYSFYNTSEYSL---------------STLGST--NTRNN 99 + ++ G +F+ L N N Sbjct: 61 AHLKDQPDLIHELLEDKTSYGETFFVPVRARWHESWVDENGDTVPALKDLKYDIGNMLNK 120 Query: 100 LESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVP---DRV 154 + I +D + ++ DF++ + + +K + +F+ + + Sbjct: 121 AIAAIEEENDALAGVLKNNIDFNAVKGKTKIPDQKWKDLIDHFNQPQFVLVNDNFEFPDL 180 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+LI+ F + +F TP +VV L L P T+YDPT Sbjct: 181 LGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVQL----------TKPEAGNTIYDPTV 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+GGFL + +V + G P L GQ+ ++C M++ + Sbjct: 231 GSGGFLIQSYQYVEEQGQD---PNDLALFGQDSNGTVWSICNMNMILHNITRFT------ 281 Query: 275 NIQQGSTLSK----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I+ G TL D + F L+NPPF + + RF P+ Sbjct: 282 -IENGDTLEDPLILDKGKIRTFERVLANPPFSQNYS--------RANMKFSNRFWEWCPE 332 Query: 331 I-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 ++F+ H+ L+ G A ++ LF G E IR L+ +D+IEA Sbjct: 333 TGKKADLMFVQHMLASLKPD----GHMATIMPHGVLFRGGK---EKLIREILINDDVIEA 385 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I++LP LF+ T I + + + K + + KV INA + GK + + + Sbjct: 386 IISLPPGLFYGTGIPACILVCNKSKPDSLKNKVLFINADREYAE----GKAQNKLRPEDI 441 Query: 450 RQILDIYVSREN-GKFSRMLDYRT 472 +I ++ ++ K+SR++ Sbjct: 442 EKIDFVFTNKLEIPKYSRLVTKEE 465 >gi|56808773|ref|ZP_00366489.1| COG0286: Type I restriction-modification system methyltransferase subunit [Streptococcus pyogenes M49 591] gi|209560056|ref|YP_002286528.1| Putative type I site-specific deoxyribonuclease [Streptococcus pyogenes NZ131] gi|209541257|gb|ACI61833.1| Putative type I site-specific deoxyribonuclease [Streptococcus pyogenes NZ131] Length = 526 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 122/502 (24%), Positives = 197/502 (39%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L EK+ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ ++ + V G Y + L + LES Sbjct: 58 NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTIANVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + F L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D+ + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDNHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +ILD Y SR+N L Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456 >gi|254360726|ref|ZP_04976874.1| type I site-specific deoxyribonuclease, methyltransferase subunit [Mannheimia haemolytica PHL213] gi|153091296|gb|EDN73270.1| type I site-specific deoxyribonuclease, methyltransferase subunit [Mannheimia haemolytica PHL213] Length = 604 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 104/574 (18%), Positives = 194/574 (33%), Gaps = 84/574 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56 L +W A+ L + ++ ++L F L+ + + ++ ++ Sbjct: 69 LNELDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 128 Query: 57 ---EKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLSTLGST---NTRNNL--ESYI 104 + S I E + A F+ + + S N + L Sbjct: 129 LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 188 Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151 S FE + R+ +L + FS Sbjct: 189 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 248 Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 249 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML-----------EPYSG 297 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGF A + + + +GQE T + V M IR + D Sbjct: 298 RIYDPAMGSGGFFVQADRFIQAHAGNRNA---ISVYGQESNSTTRKLAVMNMAIRGIPFD 354 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + TL L K+ ++NPPF +K R+ G Sbjct: 355 FGD------KPEDTLLNPLHIDKKMDVVMANPPFNQKEW-------WNESLANDPRWAYG 401 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 P + + +L H+ L G+ A++L++ + SGE +IR+ +++ DL+ Sbjct: 402 TPPQGNANFAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGDIRKNIVQADLV 455 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ALP LF T I +WI++ K +G+V INAT + R D Sbjct: 456 EAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYLKDRV---LRDFTAD 510 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 +I D Y + + K + + F Y + + F+L + Sbjct: 511 DIAKISDTYHNWQ--KQNGYENIPAFCYCA-TLDEIAKNDFVLTAGRYV---GAVQEEND 564 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 ++ + +Q E + E++K Sbjct: 565 GVPFAEKMQELTALLNEQFKQGRELEQQIAENLK 598 >gi|283954323|ref|ZP_06371844.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794122|gb|EFC32870.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 414] Length = 335 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 119/385 (30%), Positives = 194/385 (50%), Gaps = 60/385 (15%) Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFLMHLANKLELPP 350 LSNPP+GK WE D+ + E K RF G+ SDG M++L+++ +K++ Sbjct: 1 MLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFRVGITSKSDGQMMYLLNMLSKMKTDS 60 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G R A V + S LFN SG + IR+ ++E D +EAIVALPT++F+ T I T++WI+ Sbjct: 61 PLGSRIASVHNGSSLFNSD--SGMAAIRKDIIEKDYLEAIVALPTNMFYNTGIPTFIWII 118 Query: 411 SNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +N+K E ++GKV LINAT+ ++ ++ G K+ + + +I +++ K ++ Sbjct: 119 TNKKPEHKKGKVWLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENATNKDCKI 178 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 D + FGY +I + +P + + D A+L+ + L+ L+ + Q Sbjct: 179 YDNKDFGYTKITIEKPKSIEALKDDEKFAKLK-----------DKEKILEKLQELEQNPQ 227 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNL 587 + E F+ K L VK KS I D++ Sbjct: 228 DFKDREEFI---------KFLGVKLKKSEENLII----------------------DSDK 256 Query: 588 T-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 T E +P IQ Y+ EV P+V +++I + E VGYEI FN++FY Y P Sbjct: 257 TNNTEKIPLKIDIQSYYDTEVKPYVKNSWIAR--------ESASVGYEILFNKYFYTYTP 308 Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671 RKL++I+ EL+ +E ++ LL E+ Sbjct: 309 PRKLEEINNELEKLEKEVQDLLREI 333 >gi|256841216|ref|ZP_05546723.1| type I restriction-modification system, M subunit [Parabacteroides sp. D13] gi|256737059|gb|EEU50386.1| type I restriction-modification system, M subunit [Parabacteroides sp. D13] Length = 496 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 106/492 (21%), Positives = 187/492 (38%), Gaps = 67/492 (13%) Query: 1 MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 M + T + A L NF+++ + G +F I P +R+ + Sbjct: 1 MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108 A S D E + F + NL + I Sbjct: 59 ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112 Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 D + F + L + + + ++ S EL P +M + YE L+++ Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRELGNKDYPADLMGDAYEILLKK 171 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + A +F TPR VV L +L P T+YDP CG+GG L +A+ Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETIYDPACGSGGMLIEAIR 221 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 ++ D GQE A+ + + N+ QG TL Sbjct: 222 YMHD-----DFLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269 Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +F ++NPPF + + ++K R G P S G ++ H Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + + +G GR A+V+ LF + E+EIR+ L+E+DLIEA+V L LF+ T Sbjct: 325 MICSM---VSGQGRMAVVMPQGILFRNQ----ETEIRKQLVESDLIEAVVTLGDKLFYGT 377 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460 ++ I+ K G++ +I+ + + T R + I+ ++ ++ +Y + + Sbjct: 378 GLSPCFLIIRRMKPAHHFGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 433 Query: 461 NGKFSRMLDYRT 472 +SR++ + Sbjct: 434 EEDYSRIVTLQE 445 >gi|237747137|ref|ZP_04577617.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes HOxBLS] gi|229378488|gb|EEO28579.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes HOxBLS] Length = 526 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 112/550 (20%), Positives = 208/550 (37%), Gaps = 88/550 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45 M+E L +W A L G +F IL F + L Sbjct: 1 MSEEQKRL--LQQQLWNIANTLRGKMNADEFRDYILGFIFYKYLSEKVETYANKALEPDN 58 Query: 46 ---CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN--------TSEYSLSTLGST 94 L+ T+ + A ++ + F+ T Y L L Sbjct: 59 KVFAELDETKPEDKAYIDAIREEAVEDIGYFLKPSELFHVIAQKGNKKTDNYILVDLIG- 117 Query: 95 NTRNNLESYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147 N+E D+ +FED D +S ++L +K L+ ++ + I+ Sbjct: 118 -ILKNIEQSTMGHDSADDFINLFEDIDLTS--SKLGRSNTDKNALIARVLAHLDAIDFDL 174 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 V+ + YE+LI F S + A +F TP+ V L L+ +R Sbjct: 175 SNTETDVLGDAYEYLIGEFASGAGKKAGEFYTPQPVSTLLAKLVTCHRK--------KLR 226 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDPTCG+G L + + +GQEL T+ + M++ + Sbjct: 227 NVYDPTCGSGSLL---------LRVKREAESVGRIYGQELNRTTYNLARMNMILHDVH-- 275 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326 +I+Q TL + RF ++NPPF +W + + E RF Sbjct: 276 ---YSDFDIRQEDTLERPQHRDLRFDAIVANPPFSAQWSANPLFMNDE-------RFSVY 325 Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN- 384 L S + F+ H+ +L G A+V+ LF G S E+ IRR ++E Sbjct: 326 GKLAPASKADLAFVEHMIYQLSEE----GTMAVVMPHGVLFRG---SSEAHIRRHIIEKM 378 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + ++A++ LP+++F+ T+I T + +L +K + + I+A+ + ++ + + Sbjct: 379 NYLDAVIGLPSNIFYGTSIPTCILVL--KKCRKHPDNILFIDASQHFEKVKT----QNFL 432 Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 + +I++ Y R+N KF+ + + + P ++ ++ Sbjct: 433 RSEDIERIVNAYAERKNIDKFAHVATLKEIEENDYNLNIP---RYVDTFEKEEEIDIAAV 489 Query: 504 WRKLSPLHQS 513 ++L+ L Sbjct: 490 AKELAALETD 499 >gi|290957396|ref|YP_003488578.1| type I restriction modification system protein [Streptomyces scabiei 87.22] gi|260646922|emb|CBG70021.1| putative type I restriction modification system protein [Streptomyces scabiei 87.22] Length = 813 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 103/481 (21%), Positives = 186/481 (38%), Gaps = 77/481 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L +W++ ++L G + + IL ++ + + Sbjct: 6 KKSDLYGSLWRSCDELRGGMDASQYKDYILTLLFVKYVTD----------------KAKS 49 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASF---SDNAKAIFEDFDFSS 122 G SF + L + + I + + + DF+ Sbjct: 50 DPNSLIDVPVGGSF-----DDMVALKGDKEIGDKINKIIGRLAEANPTLVKVIDLTDFND 104 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDF 177 +L K L K+ F+ ++ D ++ + YE+L+R F +E + F Sbjct: 105 E-EKLGKGKEMQDRLSKLVTIFADLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQF 163 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V + ++ S T+YDPTCG+G L + + P Sbjct: 164 YTPAEVSRILAKVV------GIDPSTRQDHTVYDPTCGSGSLLLKVAD---------EAP 208 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293 + +GQE + T A+ M++ + +I +G T++ F + F Sbjct: 209 RGITIYGQEKDNATWALAKMNMILH-------DNEDADILKGDTITNPQFTTGRQLRTFD 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF K + GRF G P +G FL+H+ L+ Sbjct: 262 FAVANPPFSIKSWS-------NGLENDYGRFEYGRPPEKNGDYAFLLHILKSLKST---- 310 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+AAI+L LF G A E+ IRR LL I+ I+ LP +LF+ T I + +L Sbjct: 311 GKAAIILPHGVLFRGHA---EASIRRELLRRGYIKGIIGLPANLFYGTGIPACIIVLDKE 367 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 + R G V +I+A+ + +G K R + +I+D++ + + +SRM+ Sbjct: 368 NAQARTG-VFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNRQVEIERYSRMVPLHE 422 Query: 473 F 473 Sbjct: 423 V 423 >gi|49485299|ref|YP_042520.1| putative restriction enzyme modification protein [Staphylococcus aureus subsp. aureus MSSA476] gi|49243742|emb|CAG42167.1| putative restriction enzyme modification protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 518 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 118/552 (21%), Positives = 205/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 + + ++ Y + + L +T R S + Sbjct: 69 TWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + + D Q +I++ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQEDYVLFIDASNDFEK----GKNQNHLTDAQVERIINTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|329730414|gb|EGG66804.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 21193] Length = 518 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I++ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|120400560|gb|ABM21472.1| HsdM1 [Staphylococcus aureus] Length = 518 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEEITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I++ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|227508544|ref|ZP_03938593.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191876|gb|EEI71943.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 532 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 202/475 (42%), Gaps = 71/475 (14%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDL 69 +W A DL G+ ++F IL R L ++ + + + A+ + Sbjct: 19 LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78 Query: 70 ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLE-------------SYIASFSD-NAKAI 114 + ++ + F+ + ++ N + S I S+ + K + Sbjct: 79 DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138 Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 FED D +S +RL E++ L+ K+ N + I+ H + + V+ + YE+LI +F + Sbjct: 139 FEDMDLAS--SRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAAT 196 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP+ V + + L+ + +RT+YDPT G+G L ++ Sbjct: 197 AGKKAGEFYTPQQVSKVLSQLVTLNREE--------VRTVYDPTMGSGSLLLRVGDYAK- 247 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + +GQEL T+ + ML+ + +++QG TL D F Sbjct: 248 ---------VAEYYGQELNGTTYNLARMNMLMHGIN-----YSRFDLRQGDTLENDQFPE 293 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + F ++NPP+ W ++ R S F+ H+ L+ Sbjct: 294 RTFDAVVANPPYSANWNATDKLDDERF------RKYGKTAPKSKADFAFVEHMLYHLKTD 347 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLW 408 GR A+VL LF G A E +IR++++E D +++A++ +P +LF+ T+I T + Sbjct: 348 ----GRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVL 400 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + I+A+ + GK + + D+ ++I+D Y R++ K Sbjct: 401 VFDK---SRINHDILFIDASKDFEK----GKNQNNLTDENVKKIIDTYKDRKDVK 448 >gi|116495552|ref|YP_807286.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus casei ATCC 334] gi|116105702|gb|ABJ70844.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus casei ATCC 334] Length = 532 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 105/494 (21%), Positives = 195/494 (39%), Gaps = 77/494 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52 M + T +L +W +A+ L +++ +L + L LE Sbjct: 1 MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58 Query: 53 SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107 + + + A+ ++ + V+ Y+ + + L + + Sbjct: 59 TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116 Query: 108 SDNAKAI----------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 S + + I FED D S +L ++ ++ + K S ++L + Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYS--RKLGATPQKQNQVISDVMKQISTLDLVGQN-TN 173 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ + YE+LI +F S+ + A +F TP+ V L T + + + + T+YDP Sbjct: 174 DILGDAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDP 227 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 T G+G L +A + + GQEL T+ + M++ + + Sbjct: 228 TMGSGSLLLNARRY-------SNERLSINYFGQELNTSTYNLARMNMILHGVPIN----- 275 Query: 273 SKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP 329 ++++ TL +D F + NPP+ W+ K RF GL Sbjct: 276 NQHLHNADTLDQDWPIEEPTNFDAVVMNPPYSAHWQPSKGTEN-------DPRFVSYGLA 328 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H L+ G IVL LF G A E IR+ LLEN I+ Sbjct: 329 PKSKADFAFLLHGYYHLKDT----GVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDT 381 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++FF T+I T + +L K V I+A+ + +N + + DD Sbjct: 382 VIGLPANIFFNTSIPTTVTVL---KKSRTTRDVLFIDASKEFEKAKN----QNHLTDDNI 434 Query: 450 RQILDIYVSRENGK 463 ++IL+ ++R++ Sbjct: 435 QKILETCINRKDVD 448 >gi|298695076|gb|ADI98298.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Staphylococcus aureus subsp. aureus ED133] Length = 518 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 122/551 (22%), Positives = 207/551 (37%), Gaps = 67/551 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL GD ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGDMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------------GSTNTRNNLESYIAS 106 A+ + ++ Y L + +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFYIEHLATAIRKVETSTLGE 128 Query: 107 FSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 S+N +F D D SST E+ L+ K+ N + + ++ + YE L Sbjct: 129 ESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFL 188 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 189 IGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLR 240 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 K + GQE T+ + ML+ + R + +I+ TL Sbjct: 241 VG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTL 285 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F G F ++NPP+ KW D E +G L S F+ H+ Sbjct: 286 ENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHM 340 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T Sbjct: 341 VHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGT 393 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y S+E Sbjct: 394 SIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKSKET 447 Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 K+S + + P R ++ L+ K + + Sbjct: 448 IDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEIN 506 Query: 521 PMMQQIYPYGW 531 ++++ Sbjct: 507 AYLKELGVLKD 517 >gi|322377802|ref|ZP_08052291.1| type I restriction-modification system, M subunit [Streptococcus sp. M334] gi|321281225|gb|EFX58236.1| type I restriction-modification system, M subunit [Streptococcus sp. M334] Length = 535 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 124/572 (21%), Positives = 212/572 (37%), Gaps = 74/572 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51 E T ++ SL +W +A+ L D+ +L + L + + Sbjct: 4 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 63 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 A E Y + E + V ++ E + + L + LE F Sbjct: 64 LEAALEVYRNYYEDADTHEDLLAVMKDELNYSIKPELTFTALVARVNEGTFQLEDLAQGF 123 Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 SD +FED D S +L ++ + + K + +++ ++ Sbjct: 124 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 179 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 180 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDQL------GFTIYDATMGS 233 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P +V GQEL T+ + M++ + + + + Sbjct: 234 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 281 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + + RF P L S Sbjct: 282 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSANSGFLN-------DPRFSPFGKLAPQS 334 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 335 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 388 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T+ V I+A+ + GK + I+ D +I Sbjct: 389 LPANIFFNTSIPTTVIILKKNRTDR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 441 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y SRE KF+ + Y + P R ++ + L ++ + Sbjct: 442 LEAYKSREEMDKFAHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINTTNEA 500 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 L M+ Q++ + Sbjct: 501 IQNQTASLLEMLGQLHGTTPEADAEFKEFLKE 532 >gi|57651317|ref|YP_185366.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus COL] gi|87160229|ref|YP_493119.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220610|ref|YP_001331432.1| type I restriction-modification system, methyltransferase subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|161508680|ref|YP_001574339.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141678|ref|ZP_03566171.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|57285503|gb|AAW37597.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus COL] gi|87126203|gb|ABD20717.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373410|dbj|BAF66670.1| type I restriction-modification system, methyltransferase subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160367489|gb|ABX28460.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|269940011|emb|CBI48387.1| type I restriction-modification system modification protein [Staphylococcus aureus subsp. aureus TW20] gi|302750321|gb|ADL64498.1| Type I restriction-modification system methyltransferase subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320139279|gb|EFW31158.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 518 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|227523728|ref|ZP_03953777.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus hilgardii ATCC 8290] gi|227089043|gb|EEI24355.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus hilgardii ATCC 8290] Length = 532 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 202/475 (42%), Gaps = 71/475 (14%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDL 69 +W A DL G+ ++F IL R L ++ + + + A+ + Sbjct: 19 LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78 Query: 70 ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLE-------------SYIASFSD-NAKAI 114 + ++ + F+ + ++ N + S I S+ + K + Sbjct: 79 DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138 Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 FED D +S +RL E++ L+ K+ N + I+ H + + V+ + YE+LI +F + Sbjct: 139 FEDMDLAS--SRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAAT 196 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP+ V + + L+ + +RT+YDPT G+G L ++ Sbjct: 197 AGKKAGEFYTPQQVSKVLSQLVTLNREE--------VRTVYDPTMGSGSLLLRVGDYAK- 247 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + +GQEL T+ + ML+ + +++QG TL D F Sbjct: 248 ---------VAEYYGQELNGTTYNLARMNMLMHGIN-----YSRFDLRQGDTLENDQFPE 293 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + F ++NPP+ W ++ R S F+ H+ L+ Sbjct: 294 RTFDAVVANPPYSANWNATDKLDDERF------RKYGKTAPKSKADFAFVEHMLYHLKTD 347 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLW 408 GR A+VL LF G A E +IR++++E D +++A++ +P +LF+ T+I T + Sbjct: 348 ----GRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVL 400 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + I+A+ + GK + + D+ ++I+D Y R++ K Sbjct: 401 VFDK---SRINHDILFIDASKDFEK----GKNQNNLTDENVKKIIDTYKDRKDVK 448 >gi|120400562|gb|ABM21473.1| HsdM2 [Staphylococcus aureus] Length = 518 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEEITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDEQFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYGATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|24636602|dbj|BAC22943.1| probable type I site-specific deoxyribonuclease LldI chain hsdM [Staphylococcus aureus] Length = 518 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 208/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILSKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MIHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPFDLDQVQQDLKNIDKEIAEVEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|15923421|ref|NP_370955.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus aureus subsp. aureus Mu50] gi|156978760|ref|YP_001441019.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus aureus subsp. aureus Mu3] gi|255005227|ref|ZP_05143828.2| type I site-specific deoxyribonuclease LldI chain [Staphylococcus aureus subsp. aureus Mu50-omega] gi|14246199|dbj|BAB56593.1| probable type I site-specific deoxyribonuclease LldI chain [Staphylococcus aureus subsp. aureus Mu50] gi|156720895|dbj|BAF77312.1| probable type I site-specific deoxyribonuclease LldI chain [Staphylococcus aureus subsp. aureus Mu3] Length = 518 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPVNIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCCQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|291566631|dbj|BAI88903.1| type I restriction enzyme, modification chain [Arthrospira platensis NIES-39] Length = 813 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W ++L G + + +L L+ + Sbjct: 1 MAVKKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 + + G +F L L + + I + + + K + + DF Sbjct: 45 YAGKPNPLIIVPQGAAFS-----DLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L ++ F GI L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + +L P T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 P L +GQE++ T+++ M + + I + +TL+ + K Sbjct: 204 APNGLSIYGQEMDNATYSLARMNMFMHN-------HPTAEIWKDNTLAAPYWKEKDGSLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF + ++NPPF K + + E RFG G+P +G FL+H+ L+ Sbjct: 257 RFDFAVANPPFSYKSWSNGVDTAR----DEFNRFGYGVPPAKNGDYAFLLHILKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+AA++L LF G A E+ IR+ L+ I+ I+ LP +LF+ T I + +L Sbjct: 312 ---GKAAVILPHGVLFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVL 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469 + R G + +I+A+ + +G K R + +I+D++ ++ ++SR++ Sbjct: 366 DKAEAATRDG-LFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNNQLEIPRYSRLVS 420 Query: 470 YRT 472 Sbjct: 421 LEE 423 >gi|15926109|ref|NP_373642.1| type I site-specific deoxyribonuclease LldI chain hsdM [Staphylococcus aureus subsp. aureus N315] gi|13700322|dbj|BAB41620.1| probable type I site-specific deoxyribonuclease LldI chain hsdM [Staphylococcus aureus subsp. aureus N315] Length = 518 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPVNIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|241762572|ref|ZP_04760646.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372833|gb|EER62530.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 495 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 104/533 (19%), Positives = 190/533 (35%), Gaps = 68/533 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77 A+ L + + +D+ V L LR + A E A+ + +A Sbjct: 4 AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHVALM-----LDDPAAAEDPDEYLAE 58 Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIA--------SFSDNAKAIFEDFDFSSTIARLEK 129 F+ S L ++ I + + K + + Sbjct: 59 NIFWVPETARWSHLRDNARSPSIGKIIDEAMLAIEKANPEQLKGVLPKDYGRPAL----D 114 Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + +L ++ S I + D V+ +YE+ + F + +F TP VV Sbjct: 115 SVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 174 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++L +YDP CG+GG + V G + +GQE Sbjct: 175 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 220 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + +R + +D I+ + + +D RF Y L+NPPF Sbjct: 221 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 270 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + E R+ G P + + +L H+ L G A +VL++ + Sbjct: 271 ------DWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSM- 319 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 + E EIRR ++E D+++ +VALP LF+ T I LW L+ K + +R G++ Sbjct: 320 -SSNQNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKKQKGWRDRGGEI 378 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481 I+A L + RR + D+ +I D Y + K + + + G+ + + Sbjct: 379 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKDAGTYEDIS-GFCKSATLD 434 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 F+L E + S + + K + +Q + Sbjct: 435 EVAHQGFVLTPGRYVGAEE---VEEDSVPFTERFAALEKTLKEQFAQGEALNA 484 >gi|323442787|gb|EGB00413.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O46] Length = 518 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFIHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I++ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDTQVERIINTYKGKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|253730780|ref|ZP_04864945.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725493|gb|EES94222.1| site-specific DNA-methyltransferase (adenine-specific) [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 518 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 205/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + + D Q +I+ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLTDAQVERIISTYKHKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|330506919|ref|YP_004383347.1| N-6 DNA methylase [Methanosaeta concilii GP-6] gi|328927727|gb|AEB67529.1| N-6 DNA Methylase [Methanosaeta concilii GP-6] Length = 546 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 112/525 (21%), Positives = 194/525 (36%), Gaps = 63/525 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNI 67 + L ++W A + G F ILP +RL E +A VRE I Sbjct: 32 SMLETWLWDAACAIRGATDAPKFKDFILPLVFFKRLSDVFEDEFAAHVREYGDEELARTI 91 Query: 68 DLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKAI 114 E FY +Y+ + + L ++ A + + + + Sbjct: 92 VEEDLAHSLKTGSTPIIRFYVPGDYNWRAIRNHGADGRLGEFVTESLREVARLNPDLQGV 151 Query: 115 FE--DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + D++ + R L + + S L + ++ YE+L+R+F + Sbjct: 152 LDIKDYNERQSGQRTLDDDRLGALIEVLSRHRLGLENAEPDILGRAYEYLLRKFAEGQGQ 211 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A +F TP++V L L+ P T+YDP CG+GG L A Sbjct: 212 SAGEFYTPKEVGDLIAELI----------DPVPYSTIYDPACGSGGLLIKARLLYERRHP 261 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290 + GQEL P T A+ M + G T K F + Sbjct: 262 DERSRA-PRLWGQELNPVTFAMAKMNMFLHDYTDSSFAI-------GDTFRKPGFGPEGS 313 Query: 291 --RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +F Y ++NP + + D ++N RF G+P S ++ H+ L+ Sbjct: 314 LMQFDYVVANPMWNQDNYDD-----AFYENDSFNRFNFGIPPRSSADWGWVQHMFASLKE 368 Query: 349 PPNGGGRAAIVLSSSPLFNGRAG---SGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 GGRAA+VL + + G + E IR+ +E D IE +V LP +LF+ T Sbjct: 369 ----GGRAAVVLDTGAVSRGSGSRSSNREKAIRQAFVEADAIEGVVLLPENLFYNTTAPG 424 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465 + +L K EER G++ L+NA++ + + + + + + ++Y E Sbjct: 425 IILLLRKGKPEERAGQILLVNASNYFVKEK----PKNALTPEGIAAVAEVYQKWE----- 475 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 R R I + + L + + R ++ + Sbjct: 476 ----TREKLSRVITLDEVREADYNLSPSQFVEINEREKHRPIAEI 516 >gi|229512706|ref|ZP_04402174.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae TMA 21] gi|229350216|gb|EEO15168.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae TMA 21] Length = 523 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 102/485 (21%), Positives = 175/485 (36%), Gaps = 69/485 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +W A L G+ DF IL + L L + + S I Sbjct: 6 QQELKKQLWNIANTLRGNMDADDFRDYILGLIFYKYLSDKLNQYADDLLSE-DGLTFSEI 64 Query: 68 DL-------------ESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNA 111 D E + GY F + + + N +++ + + Sbjct: 65 DEKSEQGKAMLAAIREEALDTLGYFFAPSELFHVIAQAGANGEFILDDVRDVLNDIEQST 124 Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 DF+ L+ + L+ ++ + I+ H ++ + Y Sbjct: 125 LGAESADDFNGLFDELDLQSNKLGKTPEARNKLIAQVLVHLDNIDFHLQESEIDILGDAY 184 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F S + A +F TP+ V L L+ I+++YDPTCG+G Sbjct: 185 EYLIGMFASGAGKKAGEFYTPQMVSKLLAKLVTLD--------NPNIKSVYDPTCGSGSL 236 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L K +GQE P T+ + M++ + +I+ Sbjct: 237 LLRVAK--EANNPDIK------YYGQERNPSTYNLARMNMIMHDVH-----YKRFDIEND 283 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 TL RF ++NPPF W + + L S F+ Sbjct: 284 DTLEAPQHLDLRFDAVVANPPFSANWSASPLHLSSDRFADY-----GKLAPQSKADFAFV 338 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLF 398 +H+ ++L N G A+VL LF G A E IR+ LL E + ++ ++ LP ++F Sbjct: 339 LHMLHQL----NDTGTMAVVLPHGVLFRGAA---EGHIRQHLLKEKNYLDMVIGLPANIF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + + + + KV I+A+ + G + ++ ++ILD Sbjct: 392 FGTSIPTCVLVFKKNRQAD--DKVLFIDASQYYEK----GTNNNQMREEDLQRILDAVTK 445 Query: 459 RENGK 463 REN Sbjct: 446 RENID 450 >gi|282850456|ref|ZP_06259835.1| type I restriction-modification system, M subunit [Veillonella parvula ATCC 17745] gi|282579949|gb|EFB85353.1| type I restriction-modification system, M subunit [Veillonella parvula ATCC 17745] Length = 533 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 103/504 (20%), Positives = 191/504 (37%), Gaps = 79/504 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP---------- 50 M E A ++++ +W A DL G + F ILPF + L E Sbjct: 1 MAE--SKAQNISSQLWAIANDLRGTMDASSFKDYILPFLFYKYLSIHQEEYLVNSDLVDI 58 Query: 51 -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTN-----TRNNLESY 103 +V E Y + +AG Y E + ++L + ++ + Sbjct: 59 SDGKSVNEAYKELVEDAGLEACLIDIAGTLGYAINPEDTWASLTESIHNGSVIPSDYQRL 118 Query: 104 IASFSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTV 150 +F+ NA + IF + + + L + IE + Sbjct: 119 FENFNKNAEINKEAAADFRGIFNYINLGDSGLGSTTAGRTKTLNAVVTKIDEIEYKDENG 178 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 D + IYE+LI +F + + +F TP +V + ++ + T+Y Sbjct: 179 KDI-LGEIYEYLIGKFAANAGKKGGEFYTPHEVSKILAKIVTGNIKSQND-----TFTVY 232 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPT G+G L V + + +GQEL T+ + +++ + + Sbjct: 233 DPTMGSGSLLLT----VRNELPDGSRQGAVSFYGQELNTVTYNLARMNLMMHGVTYNNMT 288 Query: 271 DLSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + TL D G + F ++NPP+ KW+ + + + Sbjct: 289 LNNA-----DTLESDWPDGPDRDGIDRPRSFDAVVANPPYSAKWDNSESKL-------KD 336 Query: 322 GRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF L S F++H L G AIVL LF G A E +IR+ Sbjct: 337 PRFSDYGKLAPASKADYAFILHSLYHLNNE----GTMAIVLPHGVLFRGAA---EGKIRQ 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 ++E + ++A++ LP +LF+ T+I T + + +T V I+A++ + GK Sbjct: 390 TIIEKNYLDAVIGLPANLFYGTSIPTTILVFKKNRTTR---DVLFIDASNEFEK----GK 442 Query: 440 KRRIINDDQRRQILDIYVSRENGK 463 + ++ + +I++ Y +R++ Sbjct: 443 NQNNLSKENITKIIETYQNRQDVD 466 >gi|282881750|ref|ZP_06290411.1| putatIve type i restriction enzyme hindviip m protein [Peptoniphilus lacrimalis 315-B] gi|281298400|gb|EFA90835.1| putatIve type i restriction enzyme hindviip m protein [Peptoniphilus lacrimalis 315-B] Length = 510 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 104/534 (19%), Positives = 192/534 (35%), Gaps = 68/534 (12%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 IW A LWG ++ KVI+ LR + A E + + G + + Sbjct: 12 EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLK-----DGDGFENDR 66 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124 F+ E S + S ++ I + + K + S + Sbjct: 67 DAYAEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEKENTSLKNVLPKNYASPDL 126 Query: 125 ARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + +L ++ F + +++ ++ YE+ I +F + +F TP + Sbjct: 127 DK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSI 182 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V A+L P +YDP CG+GG + V + + + Sbjct: 183 VKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---NISVY 229 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQE +T + M IR ++++ T D+ + + ++NPPF Sbjct: 230 GQESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKSDFIMANPPFNL 283 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K + R+ G P + + ++ H+ + L G+ +VL++ Sbjct: 284 SNWGAD-------KLKDDVRWKYGTPPSGNANYAWIQHMIHHLAP----NGKIGLVLANG 332 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 L SGE EIRR ++E+DLIE IVALPT LF+ I LW ++ K +++GK Sbjct: 333 AL--SSQSSGEGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTL 388 Query: 424 LINATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGY 475 I+A + + K R + + + +NG+ G+ Sbjct: 389 FIDARKMGYMVDR---KHRDFTEGIQADGSLGDIDLLAKTFEDFQNGEL-----KEKKGF 440 Query: 476 RRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 I + + +IL +E + + L M ++ + Sbjct: 441 SAIASIEDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSGMFEKSHE 494 >gi|269202053|ref|YP_003281322.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus ED98] gi|262074343|gb|ACY10316.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus ED98] Length = 518 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGILFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|163790646|ref|ZP_02185074.1| type I restriction-modification system methyltransferase subunit [Carnobacterium sp. AT7] gi|159874094|gb|EDP68170.1| type I restriction-modification system methyltransferase subunit [Carnobacterium sp. AT7] Length = 540 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 116/497 (23%), Positives = 197/497 (39%), Gaps = 70/497 (14%) Query: 1 MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPT 51 MTE +++ L +W +A+ L ++ +L + L LE Sbjct: 1 MTEKIEKSSTTLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60 Query: 52 RSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYI 104 ++ A S I + ++ Y T + LE + Sbjct: 61 TEDLQVAQKLYVEACEDSAIKEDLLEELQDEFSYTIEPQLTFTAQVNAIHDGSFQLEDLV 120 Query: 105 ASF------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 F S+ + +FED D S ++ ++ + + K S L+ V+ Sbjct: 121 QGFRDIEQSSEIFENLFEDIDLYSKKLGVSPQKQNKTIADVMKELS--VLNMAGHAGDVL 178 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+LI +F SE + A +F TP+ V L T ++L + ++YDPT G Sbjct: 179 GDAYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKEN------QKGFSVYDPTMG 232 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L +A + P + GQEL T+ + M++ + + +++ Sbjct: 233 SGSLLLNAKKY-------SNEPGTISYFGQELNTSTYNLARMNMILHGVST-----ANQD 280 Query: 276 IQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 + TL +D T + F L NPP+ W DK +E RF L Sbjct: 281 LHNADTLDQDWPTEEPTNFDAVLMNPPYSANWSADKGFLE-------DVRFSTYGVLAPK 333 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G AIVL LF G GE +IR+ LLEN I+ ++ Sbjct: 334 SKADFAFLLHGYYHLKDS----GVMAIVLPHGVLFRGG---GEGKIRKVLLENGAIDTVI 386 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP ++FF T+I T + IL ++ + V I+A+ + +N + + D+ Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRSTK---DVLFIDASQGFEKSKN----QNTLTDEHIDT 439 Query: 452 ILDIYVSRENGKFSRML 468 IL + REN + + Sbjct: 440 ILKAHSKRENKEKYAYV 456 >gi|283769412|ref|ZP_06342310.1| putative type I restriction-modification system, M subunit [Bulleidia extructa W1219] gi|283103937|gb|EFC05322.1| putative type I restriction-modification system, M subunit [Bulleidia extructa W1219] Length = 510 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 102/532 (19%), Positives = 193/532 (36%), Gaps = 64/532 (12%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 IW A LWG ++ KVI+ LR + A E + ++ G + + Sbjct: 12 EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKE-----GDGFENDR 66 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----- 126 V F+ E S + S + + I + E+ + + + Sbjct: 67 DAYVEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEK--ENVSLKNVLPKNYASP 124 Query: 127 LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L ++ F + +++ ++ YE+ I +F + +F TP +V Sbjct: 125 DLDKRVLGEVVDLFTNEVKMDETEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVK 184 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 A+L P +YDP CG+GG + V + + +GQ Sbjct: 185 TIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---NISVYGQ 231 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E +T + M IR ++++ T D+ + + ++NPPF Sbjct: 232 ESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKSDFIMANPPFNLSN 285 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 K + R+ G P + + ++ H+ + L G+ +VL++ L Sbjct: 286 WGAD-------KLKDDVRWKYGTPPSGNANYAWIQHMIHHLAP----NGKIGLVLANGAL 334 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 SGE EIR+ ++E+DL+E IVALPT LF+ I LW ++ K +++GK I Sbjct: 335 --SSQSSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTLFI 390 Query: 426 NATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +A + + K R + + + +NG+ G+ Sbjct: 391 DARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNGEL-----EEKKGFSA 442 Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 I + + +IL +E + + L M ++ + Sbjct: 443 IASIEDIAKQDYILTPGRYVGIEEQEDDGEPFEKKMTRLTSELSDMFKKSHE 494 >gi|154685169|ref|YP_001420330.1| type I restriction-modification system methyltransferase subunit like protein [Bacillus amyloliquefaciens FZB42] gi|154351020|gb|ABS73099.1| type I restriction-modification system methyltransferase subunit like protein [Bacillus amyloliquefaciens FZB42] Length = 523 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 101/551 (18%), Positives = 209/551 (37%), Gaps = 73/551 (13%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + S+ +W +A L G + +++ V+L L+ E ++ + ++ Sbjct: 1 MAKKKDTKEKSMEETLWDSANKLRGSVEASEYKHVVLGLIFLKFASDKFEERKAELLDEG 60 Query: 60 LAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTRNNLESYI---ASFSDNAK 112 ++ FY TS +S + +++ + + K Sbjct: 61 KEKYVDMVE----FYTMKNVFYLSETSRWSYLVENAKQEDIALKIDTALFTVEKNNPALK 116 Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + +RL L + + I D D + IYE+ + +F Sbjct: 117 GALP----DNYYSRLNLDVSKLASLIDTINNINTIKDKQQDI-VGRIYEYFLSKFALAEG 171 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +G +F TP+ +V+L +L +YDP CG+GG ++ + Sbjct: 172 KGKGEFYTPKSIVNLIAEML-----------EPYKGKIYDPACGSGGMFVQSVKFIESHQ 220 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + +GQE T+ + + IR + ++ + T D + Sbjct: 221 GN---KKDISIYGQEYTTTTYKLAKMNLAIRGISANLGETAA------DTFFNDQHKDLK 271 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPP 350 + ++NPPF + E++ + R+ G +P + + +++++ +KL Sbjct: 272 ADFIMANPPFN------QKQWRAENELTDDPRWAGYEVPPRGNANYAWILNIVSKL---- 321 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 + G A +L++ L G E +IR+ L+ENDL+E+I+ LP ++F+ TNI+ LWIL Sbjct: 322 SENGVAGFLLANGALSGGG---DEYKIRKKLIENDLVESIIVLPQNMFYTTNISVTLWIL 378 Query: 411 SNRKTEERRG-------------KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + K +V ++ ++ K ++D ++ +IY Sbjct: 379 NKNKKARTIDQNGSLKKYRNREKEVLFMDLREMGVPFEK---KYTQFSEDDITKVTNIYH 435 Query: 458 SRENGKFSRMLDY-RTFGYRRIKVLRPLRMSFILDKTGLARL---EADITWRKLSPLHQS 513 + + + F Y + F L + + DI + + L QS Sbjct: 436 NWQQTDYETKYQNIPEFSYSA-TFEEVVNKDFSLVPSKYIEFANRDEDIDFDEKMKLIQS 494 Query: 514 FWLDILKPMMQ 524 ++D+LK Sbjct: 495 EFVDLLKAEED 505 >gi|227529075|ref|ZP_03959124.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus vaginalis ATCC 49540] gi|227351087|gb|EEJ41378.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus vaginalis ATCC 49540] Length = 550 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 106/508 (20%), Positives = 191/508 (37%), Gaps = 80/508 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSA 54 A + N IW+ A L G+ +++ IL F R L + Sbjct: 2 SKAQKITNKIWEMANRLRGNMDASEYRDYILGFMFYRYLSEHQEKYLVKNEVVFPEEGQS 61 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIASFS 108 V + YL ++ +AG Y + Y+ +T+ + ++ + SF+ Sbjct: 62 VNDAYLTQVPEEDLNDALADIAGSLGYAIAPQYTWATIVDKVHDNKIAASDYQDMFDSFN 121 Query: 109 DNAK----------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 N +F+D + +++ +A L I IE + D + Sbjct: 122 HNLNLNANSKMDFTGVFDDMNLNNSRLGNNTAARAKALTNIIDLVDEIEYRDENGKDI-L 180 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +IY +LI F S + A +F TP V + L+ + D ++YD CG Sbjct: 181 GDIYTYLIAEFASNSGKKAGEFFTPHQVSEVLAKLVTENLDKNITRP-----SVYDFACG 235 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + ++ HGQEL T+ + +++ + + + Sbjct: 236 SGSLLLTVSEQLPS-------NMVVHYHGQELNTSTYNLARMNLMMHDVRYENM-----D 283 Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 ++ TL D G + F ++NPP+ +W + + RF Sbjct: 284 LRNADTLEMDWPDGVDEHGVDHPRSFDMVVANPPYSARW-------DNNDNKLKDPRFKE 336 Query: 327 --GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + FL+H L+ G AIVL LF G E++IR+ LLE Sbjct: 337 YGALAPKTKADYAFLLHGLYHLKQD----GTMAIVLPHGVLFRGAK---EAKIRQALLEK 389 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+AI+ LP +LF+ T I T + +L K + V I+A+ + GK + + Sbjct: 390 NQIDAIIGLPANLFYSTGIPTVVLVLKKNKENK---DVLFIDASKDFEK----GKNQNTL 442 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472 + +I++ Y R++ + Sbjct: 443 RKEDIDKIINTYKERKDVDKYAHVASID 470 >gi|309808312|ref|ZP_07702218.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a] gi|308168459|gb|EFO70571.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a] Length = 398 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 88/439 (20%), Positives = 170/439 (38%), Gaps = 49/439 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + +W A LWG ++ +VI+ LR + A + + + Sbjct: 1 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + F+ E T+ +N I + + K Sbjct: 59 ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L + F+ I++ + ++ YE+ I +F + + Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YD CG+GG + + Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR +++D + T + DL + Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + K + R+ G P + + ++ H+ + L Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L + GE EIR+ ++E+DLIE I++LP LF+ +I LW +S Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISK 379 Query: 413 RKTEERRGKVQLINATDLW 431 K ++ + + ++ D W Sbjct: 380 NKNKKEKQSLLMLAKWDTW 398 >gi|254448598|ref|ZP_05062057.1| type I restriction-modification system methyltransferase subunit [gamma proteobacterium HTCC5015] gi|198261787|gb|EDY86073.1| type I restriction-modification system methyltransferase subunit [gamma proteobacterium HTCC5015] Length = 494 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 109/459 (23%), Positives = 187/459 (40%), Gaps = 53/459 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +W AE L G +D+ + I P +RL + E + Sbjct: 5 NKKKLEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEALEIHEG----- 59 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESY---IASFSDNAKAIFEDFDFS 121 D E + F E + S N +++ I + + +F D ++ Sbjct: 60 -DAEYAAMPMFHRFDIPQEARWEKVRHTSKNIGEAIQNALRLIEANNPRLHGVFGDAQWA 118 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + RL LL + ++FS I L +V + YE+LI++F + A +F T R Sbjct: 119 NK-ERLPDH-LLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 176 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 VVHL T ++ T YDPTCGTGG L +A V D S + + Sbjct: 177 TVVHLMTRIMGL----------KPGETAYDPTCGTGGMLLNA---VMDLRSQGQEWRGVH 223 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297 +GQE+ T A+ M + +E ++ +G TL++ F K+F + Sbjct: 224 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLAEPKFIENDQLKQFDVIFA 276 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+ K + GR G+P F H+ L+ GRAA Sbjct: 277 NPPYSIK-----KWNRDKFAADPYGRNLYGVPPQGCADYAFYTHIIKSLKPDT---GRAA 328 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 ++ LF E IR+ ++E+D+IEA++ L LF+ + + + + +L+ K + Sbjct: 329 MLWPHGVLFR----DSEKSIRKQVIESDIIEAVIGLGPSLFYNSTMESCVVVLNKNKRNK 384 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + +V I+A++ + R R +++ I Y Sbjct: 385 LKNRVLFIDASEEISKERG----RTFLSEKNIDSICKKY 419 >gi|15924798|ref|NP_372332.1| type I restriction enzyme EcoR124II M protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927382|ref|NP_374915.1| hypothetical protein SA1626 [Staphylococcus aureus subsp. aureus N315] gi|21283480|ref|NP_646568.1| hypothetical protein MW1751 [Staphylococcus aureus subsp. aureus MW2] gi|49486627|ref|YP_043848.1| putative type I restriction enzyme modification protein [Staphylococcus aureus subsp. aureus MSSA476] gi|148268280|ref|YP_001247223.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH9] gi|150394345|ref|YP_001317020.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH1] gi|156980124|ref|YP_001442383.1| type I restriction enzyme EcoR124II M protein [Staphylococcus aureus subsp. aureus Mu3] gi|255006594|ref|ZP_05145195.2| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258446038|ref|ZP_05694214.1| type I restriction-modification system [Staphylococcus aureus A6300] gi|269203441|ref|YP_003282710.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus ED98] gi|13701601|dbj|BAB42894.1| SA1626 [Staphylococcus aureus subsp. aureus N315] gi|14247580|dbj|BAB57970.1| type I restriction enzyme EcoR124II M protein homolog [Staphylococcus aureus subsp. aureus Mu50] gi|21204921|dbj|BAB95616.1| hsdM [Staphylococcus aureus subsp. aureus MW2] gi|49245070|emb|CAG43536.1| putative type I restriction enzyme modification protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147741349|gb|ABQ49647.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946797|gb|ABR52733.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus JH1] gi|156722259|dbj|BAF78676.1| type I restriction enzyme EcoR124II M protein homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257855280|gb|EEV78219.1| type I restriction-modification system [Staphylococcus aureus A6300] gi|262075731|gb|ACY11704.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus ED98] gi|285817487|gb|ADC37974.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Staphylococcus aureus 04-02981] gi|312830179|emb|CBX35021.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130553|gb|EFT86539.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus CGS03] gi|329727301|gb|EGG63757.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 21172] Length = 518 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 118/552 (21%), Positives = 204/552 (36%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + + I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y + Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKA 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|323490714|ref|ZP_08095916.1| type I restriction-modification system, M subunit [Planococcus donghaensis MPA1U2] gi|323395596|gb|EGA88440.1| type I restriction-modification system, M subunit [Planococcus donghaensis MPA1U2] Length = 527 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 119/550 (21%), Positives = 212/550 (38%), Gaps = 70/550 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G + DF IL R L E + + E+ Sbjct: 9 QQQAELHKKLWTMANDLRGQMEAYDFKNYILGLIFYRYLSEKTEARIAKLLEEDNISYED 68 Query: 66 NIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNN--------LESYIASFSDNA 111 E + + + F E+ S++ + +++ L I + ++ Sbjct: 69 AWKDEEYREGLIETLLEEIGFVIEPEFLFSSMVTEIPKSDQGKFDVELLHKAIKAIEEST 128 Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 DF ++ ++ L+ KI + + I D V V+ + Y Sbjct: 129 LGTDSQQDFEHLFDDMDLTSTKLGRDVKSRSKLIAKIILSINDIPFLHDDVDIDVLGDAY 188 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI +F + + A +F TP+ V + ++ L + +YDPTCG+G Sbjct: 189 EYLISQFAANAGKKAGEFYTPQQVSKILAKIVTHEKPDL--------KNVYDPTCGSGSL 240 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + K + + +GQEL T + ML+ L R +IQ Sbjct: 241 MLRV----------AKESNVRLFYGQELTTTTFNLARMNMLLHDL-----RYTDFDIQNE 285 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 +TL RF ++NPP+ W D ++ E + GR L S F+ Sbjct: 286 NTLENPKHVDMRFEAVVANPPYSANWSADAKYLDDERFSDY-GR----LAPKSKADFAFV 340 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLF 398 H+ ++L + G A+VL LF G A E IR++L+E + ++A++ LP ++F Sbjct: 341 QHMIHQL----DDNGTMAVVLPHGVLFRGGA---EGVIRQFLIEDKNYLDAVIGLPANVF 393 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + + +KT + V I+A++ + GK + + D+ +I+D Y + Sbjct: 394 FGTSIPTCVLVF--KKTRKEDADVIFIDASNEFEK----GKNQNNLTDENVDKIVDTYKT 447 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 RE + +S + P R ++ L LEA Sbjct: 448 REKIERYSYAASLEEIKENDYNLNIP-RYVDTFNEEELVDLEAVQVRLNEIDQEIEEIDR 506 Query: 518 ILKPMMQQIY 527 L+ +++ Sbjct: 507 ELEQYFKELG 516 >gi|78773893|gb|ABB51238.1| type I RM system M subunit [Arthrospira platensis] Length = 814 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W ++L G + + +L L+ + Sbjct: 1 MAVKKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 + + G +F L L + + I + + + K + + DF Sbjct: 45 YAGKPNPLIIVPQGAAFS-----DLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L ++ F GI L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + +L P T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 P L +GQE++ T+++ M + + I + +TL+ + K Sbjct: 204 APNGLSIYGQEMDNATYSLARMNMFMHN-------HPTAEIWKDNTLAAPYWKEKDGSLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF + ++NPPF K + + E RFG G+P +G FL+H+ L+ Sbjct: 257 RFDFAVANPPFSYKSWSNGVDTAR----DEFNRFGYGVPPAKNGDYAFLLHILKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+AA++L LF G A E+ IR+ L+ I+ I+ LP +LF+ T I + +L Sbjct: 312 ---GKAAVILPHGVLFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVL 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469 + R G + +I+A+ + +G K R + +I+D++ ++ ++SR++ Sbjct: 366 DKAEAATRDG-LFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNNQLEIPRYSRLVS 420 Query: 470 YRT 472 Sbjct: 421 LEE 423 >gi|329313150|gb|AEB87563.1| Type I restriction-modification system, methyltransferase subunit [Staphylococcus aureus subsp. aureus T0131] Length = 518 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI F + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGHFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|311278008|ref|YP_003940239.1| type I restriction-modification system, M subunit [Enterobacter cloacae SCF1] gi|308747203|gb|ADO46955.1| type I restriction-modification system, M subunit [Enterobacter cloacae SCF1] Length = 535 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 98/545 (17%), Positives = 192/545 (35%), Gaps = 78/545 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----Y 59 + + L +W A+ L G +F L F + L + + + Y Sbjct: 6 EAQNLSELQGRLWNIADTLRGKMNADEFRDYCLGFIFYKYLSEKFVAYANKILAEDGIQY 65 Query: 60 LAFGGSNIDLESFVKVAGYS--------------FYNTSEYSLSTLGSTN---TRNNLES 102 + + V F+ +E T +L + Sbjct: 66 NELTAEHPAYQDIVDAVKEDSIQTLGYFLPPTDLFHTMAERVAKDPKGTGTGFILEDLAT 125 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTV 150 + + + DFS+ L+ K L+ K+ + + Sbjct: 126 TLRNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVVTELDKLSFNLSEA 185 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++ + YE+LI +F S + A +F TP+ V L ++ ++ +Y Sbjct: 186 SSDILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKL--------KLKNVY 237 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L + + +GQE+ T+ + M++ + Sbjct: 238 DPTCGSGSLL---------LRVKREASSVGKIYGQEMNRTTYNLARMNMILHGVHYADFE 288 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I Q TL T +F ++NPPF KW + + L Sbjct: 289 -----IIQEDTLEHPQHTHLKFDAIVANPPFSAKWSASPLFMNDDRFAQY-----GKLAP 338 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389 S M F+ H+ + LE G A+VL LF G A E IR++++E + I+A Sbjct: 339 SSKADMAFVQHMFHHLEDD----GTMAVVLPHGVLFRGAA---EGHIRQFMIEKLNCIDA 391 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++F+ T+I T + +L RK + + I+A++ + ++ + + + Sbjct: 392 VIGLPANIFYGTSIPTCVLVL--RKCRKHNDSILFIDASNDFEKVKT----QNRLLPEHI 445 Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 +I D Y + K+S + + P ++ ++ + +++ Sbjct: 446 DKIADTYNDWKALEKYSHIATLEEIRNNDYNLNIP---RYVDTFEAEEEIDLNAVAQEIR 502 Query: 509 PLHQS 513 L Sbjct: 503 DLEGK 507 >gi|315038269|ref|YP_004031837.1| type I restriction-modification system, M subunit [Lactobacillus amylovorus GRL 1112] gi|312276402|gb|ADQ59042.1| type I restriction-modification system, M subunit [Lactobacillus amylovorus GRL 1112] Length = 557 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 116/515 (22%), Positives = 199/515 (38%), Gaps = 79/515 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------ 48 M E T + L + ++ A+ L ++ +L + L L Sbjct: 1 MAE-TLTKTELEHALFSAADSLRSKMDANEYKNYLLGIIFYKYLSDKLLYIAAESLDPNF 59 Query: 49 -EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEY-------------------S 87 + +K+ N D + + Y S + Sbjct: 60 IDDRDDLPLDKWQKMYAENADDAELLSDLKATLMYLISPEHTFTYIFNEINGEARTKDGN 119 Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICK---NFS 141 L T ++ + I S S + +F+D S ++A + ++ K + Sbjct: 120 LKTFQISDLADAFND-IESTSKDFDGLFKDVQLYSQKLGSNAQKQADTISEVIKSIGKIN 178 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 IE + + + YE+LIR F SE + A +F TP+ V L T L L Sbjct: 179 LIEQDDQNNKNDTLGDAYEYLIREFASESGKKAGEFYTPQKVSELLTKLTLVGKK----- 233 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 T+YDP G+G L + ++ D P ++ +GQE+ T + M++ Sbjct: 234 -YPEGMTVYDPAMGSGSLLLNFKKYIKDFAG--GDPNKVIYYGQEINISTFNLARMNMIL 290 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 ++S +++++QG TL D + F + NPP+ KW +K ++ Sbjct: 291 HGVDS-----GNQHLRQGDTLDADWPPISQTMFDAVVMNPPYSLKWSANKGFLQ------ 339 Query: 320 ELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 RF P L S FL+H L+ G AIVL LF G A E +I Sbjct: 340 -DPRFSPYGVLAPKSKADYAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKI 391 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R+ LLEN I+A++ LP +LF+ T+I T + +L K V I+A+ + +N Sbjct: 392 RKKLLENGSIDAVIGLPANLFYNTSIPTVILVLKKNKENR---DVIFIDASKGFEKKKN- 447 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + + ++ ++ILD Y E+ + L Sbjct: 448 ---QNELREEDIQKILDTYEKHEDVERYAHLAKYD 479 >gi|94989256|ref|YP_597357.1| type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS9429] gi|94993144|ref|YP_601243.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS2096] gi|94542764|gb|ABF32813.1| type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS9429] gi|94546652|gb|ABF36699.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS2096] Length = 526 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 119/502 (23%), Positives = 195/502 (38%), Gaps = 76/502 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52 M E T S L +W +A+ L G D+ +L + L LE Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLIAVCDNLEEHF 57 Query: 53 SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 + + A+ + + V G Y + L + LES Sbjct: 58 NTFTDAQKIFEDAYQDQGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + +GQE+ T+ + M++ + ++ Sbjct: 228 GSGSLLLNAKKYSHQ-------SDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275 Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330 ++ TL D T + F L NPP+ KW + RF G L Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E +IR+ LLE I+ I Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+++F+ T+I T + IL +T + V I+A+ + GK + + D + Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 ++L+ Y SR+N L Sbjct: 435 KVLNAYKSRDNSDKFSYLASFD 456 >gi|302332146|gb|ADL22339.1| Type I restriction-modification system methyltransferase subunit, HsdM_1 [Staphylococcus aureus subsp. aureus JKD6159] Length = 518 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWIADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I++ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDAFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|253756219|ref|YP_003029359.1| type I restriction-modification system M protein [Streptococcus suis BM407] gi|251818683|emb|CAZ56518.1| type I restriction-modification system M protein [Streptococcus suis BM407] Length = 529 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 107/572 (18%), Positives = 204/572 (35%), Gaps = 91/572 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52 + + ++ N IW A +L G+ +++ IL F R L +E Sbjct: 1 MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106 V++ Y N +E A + Y + + L + ++ ++ Sbjct: 61 ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ N + +F D + + + + +A L I K IE D D Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + ++YDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L N + + +GQE+ T+ + +++ ++ + Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYSNMILNN 287 Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D G + F ++NPP+ KW + + RF Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335 Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L S F++H L N G AIVL LF G A E IR+ ++ Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E + ++A++ LP +LF+ T I T + + + + V I+A+ + GK + Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 ++DD +I++ Y +R+ + + + L+ + Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492 Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532 L + Q D ++ + +I Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524 >gi|93005780|ref|YP_580217.1| type I restriction-modification system, M subunit [Psychrobacter cryohalolentis K5] gi|92393458|gb|ABE74733.1| type I restriction-modification system, M subunit [Psychrobacter cryohalolentis K5] Length = 809 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 103/506 (20%), Positives = 199/506 (39%), Gaps = 75/506 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + +W + +L G + + +L ++ + Sbjct: 1 MALKKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120 + V G SF + L ++ IA ++ + + + DF Sbjct: 45 YKDDAFGDIVVPEGGSF-----DDMVALKGDKEIGEKVDKIIAKLAEANGLRGVIDVADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-EKLGTGKEHVDRLSKLIGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ D+ T+YDP CG+G L + + Sbjct: 159 QFYTPSEVSRILAKIIGVDDNTPLDA------TVYDPACGSGSLLLKVSD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291 P L +GQE++ T A+ M++ +I +G+TLS F K Sbjct: 204 APRGLTIYGQEMDFATTALAKMNMILHGATG-------ADIYKGNTLSSPHFVEGNQLKT 256 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + ++NPPF K ++ E RF G+P +G FL+H+ L+ Sbjct: 257 FDFIVANPPFSNKN----WTSGLNPESDEFDRFTWGIPPEKNGDYAFLLHIIKSLKST-- 310 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A++L LF G A E+ IR+ L++ I+ I+ LP +LF+ T I + ++ Sbjct: 311 --GVGAVILPHGVLFRGNA---EAHIRQNLIKQGYIKGIIGLPANLFYGTGIPACVIVID 365 Query: 412 NRKTE-ERRGK--VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467 + +G + +++A+ + +G K R + +I+D++ S+ N +SRM Sbjct: 366 KNTAQSRAKGDAGLFMVDASRGYM---KDGNKNR-LRSQDIHKIVDVFNSQLNLTGYSRM 421 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKT 493 ++ + P + +D+ Sbjct: 422 VELDEIIDNDYNLNIPRYIDASIDED 447 >gi|302024399|ref|ZP_07249610.1| type I restriction-modification system, M subunit [Streptococcus suis 05HAS68] gi|330833400|ref|YP_004402225.1| type I restriction-modification system, M subunit [Streptococcus suis ST3] gi|329307623|gb|AEB82039.1| type I restriction-modification system, M subunit [Streptococcus suis ST3] Length = 529 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 107/572 (18%), Positives = 204/572 (35%), Gaps = 91/572 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52 + + ++ N IW A +L G+ +++ IL F R L +E Sbjct: 1 MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106 V++ Y N +E A + Y + + L + ++ ++ Sbjct: 61 ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ N + +F D + + + + +A L I K IE D D Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + ++YDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L N + + +GQE+ T+ + +++ ++ + Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVSYSNMILNN 287 Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D G + F ++NPP+ KW + + RF Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335 Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L S F++H L N G AIVL LF G A E IR+ ++ Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E + ++A++ LP +LF+ T I T + + + + V I+A+ + GK + Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 ++DD +I++ Y +R+ + + + L+ + Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492 Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532 L + Q D ++ + +I Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524 >gi|295132749|ref|YP_003583425.1| type I restriction-modification system, M subunit [Zunongwangia profunda SM-A87] gi|294980764|gb|ADF51229.1| type I restriction-modification system, M subunit [Zunongwangia profunda SM-A87] Length = 531 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 115/560 (20%), Positives = 200/560 (35%), Gaps = 87/560 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPTR 52 M+E A L +W A L G D+ IL F + L LEP Sbjct: 1 MSEDQKKA--LEKQLWAIANLLRGKMDADDYRNYILGFIFFKYLSEKLHIYADRILEPDG 58 Query: 53 SAVREKYLAFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGSTN------------- 95 E + +E+ K GY + ++ N Sbjct: 59 LKYTEIDENSEEGKVYIEAIKKACIKNIGYFLKPSELFTSIANKGANLTGIATNENQEAT 118 Query: 96 ---TRNNLESYIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNF 140 +LE + + + + DF L+ K L+ KI + Sbjct: 119 QFFILEDLEHILNNIEQSTMGTDSEDDFVRLFEDLDLTSSKLGRTVKAKNELIAKILAHL 178 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 + I+ + V+ + YE+LI +F + A +F TP+ V + ++ Sbjct: 179 NQIDFQLENAESDVLGDAYEYLIGQFAENAGKKAGEFYTPQQVSTILAKIV--------T 230 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 I+++YDPTCG+G L V D G +GQEL T+ + M+ Sbjct: 231 SRKKRIKSVYDPTCGSGSLLLRVAKEVEDVG---------YFYGQELNRTTYNLARMNMI 281 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + + +I+Q TL + + ++NPPF KW + + Sbjct: 282 LHDVHF-----SKFDIKQEDTLEEPQHLDVQAEAIVANPPFSAKWSAKGVFSSDDRFSQY 336 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 L S F+ H+ + L+ G A VL LF G A E IR++ Sbjct: 337 -----GKLAPKSKADFAFVQHMIHHLDES----GIMATVLPHGVLFRGAA---EGHIRKY 384 Query: 381 LLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E+ + I+A++ LP ++FF T I T + ++ +K E V I+A+ + +G Sbjct: 385 LIEDRNYIDAVIGLPANIFFGTGIPTCILVI--KKCREIDDDVLFIDASKGFE---KQG- 438 Query: 440 KRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 K ++ + +I+D Y R+ KFS + P ++ + Sbjct: 439 KDNVLLPEHIEKIVDTYTERKELDKFSYCASLAEIKENDYNLNIP---RYVDTFEEEEPV 495 Query: 499 EADITWRKLSPLHQSFWLDI 518 + + ++L L Sbjct: 496 DIEAVAKELKALETEIQQTD 515 >gi|91773784|ref|YP_566476.1| type I restriction-modification system, M subunit [Methanococcoides burtonii DSM 6242] gi|91712799|gb|ABE52726.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242] Length = 554 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 107/570 (18%), Positives = 199/570 (34%), Gaps = 108/570 (18%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----------K 58 L +W A +L G +F IL F + L +E + + + Sbjct: 7 KQLEQQLWNIANELRGKMNADEFRDYILGFIFYKYLSNKIEIYADEILKPDGIAFKDIKE 66 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------------------------- 91 G I+ S V ++ S + Sbjct: 67 DTELGKEFIEAISEASVEKLGYFLKPSELFSEVARRGSSSYSASSGSSNYSNSSLSVEPF 126 Query: 92 --GSTNTRNNLESYIASF-SDNAKAIFEDF-----------DFSSTIARLE--------- 128 G SY F ++ + I + DF + ++ Sbjct: 127 VTGQNAMAVAESSYGDEFILEDLQGILNNIQSSTMGTESEDDFENLFEDMDLNSSKLGKT 186 Query: 129 ---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + L+ K+ + I+ + V+ + YE+LI +F S + A +F TP+ V Sbjct: 187 PAARNALISKVLSHLDKIDFQLEHTELDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVST 246 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 + L+ +R++YDPTCG+G L V D + +GQ Sbjct: 247 ILAKLVTTGKK--------RLRSVYDPTCGSGSLLLRVAREVEDVSA---------FYGQ 289 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL T+ + M++ + +I+Q TL G +F ++NPPF +W Sbjct: 290 ELNRTTYNLARMNMILHNVH-----YRKFDIKQEDTLEYPQHLGMQFEAIVANPPFSAQW 344 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + E + L S F+ H+ + L G AIVL L Sbjct: 345 SANPLFSSDERFSQY-----GKLAPKSKADYAFVQHMIHHLAE----NGSMAIVLPHGVL 395 Query: 366 FNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 F G A E IR++L+E + ++A++ LP ++F+ T+I T + + +K E + Sbjct: 396 FRGAA---EGHIRQFLIEEKNYLDAVIGLPANVFYGTSIPTCVLVF--KKCRENPDDILF 450 Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRP 483 I+A+ + ++ + + +I+D Y +R+ + +S + + P Sbjct: 451 IDASQDYEKVKT----QNQLRPCDIDKIVDTYRNRKEIEKYSHVASLDEIKENDYNLNIP 506 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQS 513 ++ ++ D L L + Sbjct: 507 ---RYVDTFEEEEPIDIDAVAASLLELDEK 533 >gi|30248402|ref|NP_840472.1| hsdM; site-specific DNA-methyltransferase, type I modification [Nitrosomonas europaea ATCC 19718] gi|30138288|emb|CAD84296.1| hsdM; site-specific DNA-methyltransferase, type I modification [Nitrosomonas europaea ATCC 19718] Length = 571 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 109/587 (18%), Positives = 193/587 (32%), Gaps = 119/587 (20%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----------- 57 L +W A+ L + + V+L L+ + A E + +RE Sbjct: 10 NDLEKKLWTAADKLRSNLDAAVYKHVVLGLIFLKYVSDAFEERQRELREQFTNPQHDYYM 69 Query: 58 -----------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----------- 95 +Y + +++ + F+ E TL Sbjct: 70 DPEEYGGAGTPEYEDNIAAELEVRDYY-TEKNVFWVPVEARWQTLRDCAQLPPKAALPWN 128 Query: 96 ---------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 +N I + K + DF+ +L+ + L ++ F Sbjct: 129 KPGKDEPEEMRSVGWLIDNAMEAIERENIRLKNVLNK-DFARV--QLDSSK-LGELIALF 184 Query: 141 SGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 S + ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 185 SDTDFAAKTYKGQPLSLQSRDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEML- 243 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPE 250 +YDP G+GGF + + G + +GQE P Sbjct: 244 ----------QPFKGRVYDPAMGSGGFFVQSEEFIGQHGGKAANGKSGQISVYGQESNPT 293 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 T + M IR ++ + + TL DL R + ++NPPF K Sbjct: 294 TWRLAAMNMAIRGIDFNFGSGPA------DTLLNDLHPDLRADFVMANPPFNMKEW---- 343 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 K R+ G P + + +L H+ L G A ++ + S N Sbjct: 344 ---WNEKLANDPRWIAGTPPQGNANFAWLQHMLWHLAPT---GSMALLLANGSMSSN--- 394 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGK 421 + E EIR+ L E+D +E +VALP LF T I +W L+ +K +RRG+ Sbjct: 395 TNSEGEIRKRLTEDDYVECMVALPGQLFTNTQIPACIWFLTRDKQNGFALDKKKRDRRGE 454 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-- 479 I+A + R D ++I D + + + G + G+ + Sbjct: 455 FLFIDARQMGYMKDRV---LRDFTVDDIQKIADTFHAWQQGDGYEDVP----GFCKSASL 507 Query: 480 --------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 VL P R ++ AD R + L + F Sbjct: 508 EEVRKHEHVLTPGRYVGTAEQEEDGEPFADKMQRLTAQLAEQFAESA 554 >gi|82750144|ref|YP_415885.1| type I site-specific deoxyribonuclease [Staphylococcus aureus RF122] gi|82751391|ref|YP_417132.1| type I restriction-modification system M subunit [Staphylococcus aureus RF122] gi|82655675|emb|CAI80072.1| type I site-specific deoxyribonuclease [Staphylococcus aureus RF122] gi|82656922|emb|CAI81357.1| type I restriction-modification system M subunit [Staphylococcus aureus RF122] Length = 518 Score = 299 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 118/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDSKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGA---SEGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I++ Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|223934049|ref|ZP_03626001.1| type I restriction-modification system, M subunit [Streptococcus suis 89/1591] gi|223897276|gb|EEF63685.1| type I restriction-modification system, M subunit [Streptococcus suis 89/1591] Length = 529 Score = 299 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 107/572 (18%), Positives = 205/572 (35%), Gaps = 91/572 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52 + + ++ N IW A +L G+ +++ IL F R L +E Sbjct: 1 MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106 V++ Y+ N +E A + Y + + L + ++ ++ Sbjct: 61 ETVQDAYVREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ N + +F D + + + + +A L I K IE D D Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + ++YDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L N + + +GQE+ T+ + +++ ++ + Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVSYSNMILNN 287 Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D G + F ++NPP+ KW + + RF Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335 Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L S F++H L N G AIVL LF G A E IR+ ++ Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E + ++A++ LP +LF+ T I T + + + + V I+A+ + GK + Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 ++DD +I++ Y +R+ + + + L+ + Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492 Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532 L + Q D ++ + +I Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524 >gi|330991916|ref|ZP_08315865.1| Putative type I restriction enzyme HindVIIP M protein [Gluconacetobacter sp. SXCC-1] gi|329760937|gb|EGG77432.1| Putative type I restriction enzyme HindVIIP M protein [Gluconacetobacter sp. SXCC-1] Length = 536 Score = 299 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 101/527 (19%), Positives = 186/527 (35%), Gaps = 68/527 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77 A+ L + + +D+ V L LR + A E A+ + + E A Sbjct: 40 AADKLRKNLEPSDYKHVTLGLIFLRYISTAFEAHHEALL--HDDREAAEDPDEYL---AE 94 Query: 78 YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129 F+ S L + + + + I + + K + + Sbjct: 95 NIFWVPEAARWSHLQANARSSAIGTMIDDAMLAIEQANPDQLKNVLPKDYGRREL----D 150 Query: 130 AGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + +L ++ S I + V+ +YE+ + F +F TP VV Sbjct: 151 SVMLGELVDLISEIGMGGSEDQARDVLGRVYEYFLGGFAGAEGRRGGEFYTPSSVVRTLV 210 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++L +YDP CG+GG + V G + +GQE Sbjct: 211 SML-----------EPYKGRVYDPCCGSGGMFVQSEQFVESHG---GKLGDIAIYGQESN 256 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + +R + +D I+ + + +D RF L+NPPF Sbjct: 257 YTTWRLAKMNLAVRGIGAD--------IRWNNEGSFLRDALKDLRFDTILANPPFNVSEW 308 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 E R+ G P + + +L H+ L G A +VL++ + Sbjct: 309 -------WNASLEEDPRWQYGKPSAGNANYAWLQHILWHLAPD----GMAGVVLANGSMS 357 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422 + +GE +IRR ++ D+++ +VALP LF+ T I LW L+ K +RRG++ Sbjct: 358 SD--QNGEGDIRRRMVGADVVDCMVALPGQLFYSTQIRACLWFLARNKNPKGWRDRRGEI 415 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-IKVL 481 I+A L + RR + D I Y + K + G+ + + + Sbjct: 416 LFIDARKLGIMVDRT---RRELTDADVALIAGTYHAWRGEKGAGPYGDIP-GFCKSVTLE 471 Query: 482 RPLRMSFILDKTGL----ARLEADITWRKLSPLHQSFWLDILKPMMQ 524 R F+L +E I + + + + + + Sbjct: 472 DVERHGFVLTPGRYVGKKKTVEDSIPFAERFAVLEKTLQAQFRQGAE 518 >gi|146321640|ref|YP_001201351.1| Type I restriction-modification system methyltransferase subunit [Streptococcus suis 98HAH33] gi|253752459|ref|YP_003025600.1| type I restriction-modification system M protein [Streptococcus suis SC84] gi|253754285|ref|YP_003027426.1| type I restriction-modification system M protein [Streptococcus suis P1/7] gi|145692446|gb|ABP92951.1| Type I restriction-modification system methyltransferase subunit [Streptococcus suis 98HAH33] gi|251816748|emb|CAZ52390.1| type I restriction-modification system M protein [Streptococcus suis SC84] gi|251820531|emb|CAR47286.1| type I restriction-modification system M protein [Streptococcus suis P1/7] gi|292559063|gb|ADE32064.1| Type I restriction-modification system M subunit [Streptococcus suis GZ1] gi|319758863|gb|ADV70805.1| Type I restriction-modification system methyltransferase subunit [Streptococcus suis JS14] Length = 529 Score = 299 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 107/572 (18%), Positives = 204/572 (35%), Gaps = 91/572 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52 + + ++ N IW A +L G+ +++ IL F R L +E Sbjct: 1 MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106 V++ Y N +E A + Y + + L + ++ ++ Sbjct: 61 ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ N + +F D + + + + +A L I K IE D D Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVVRAKSLNSIVKLIDSIEYKNDEGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + ++YDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L N + + +GQE+ T+ + +++ ++ + Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYSNMILNN 287 Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D G + F ++NPP+ KW + + RF Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335 Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L S F++H L N G AIVL LF G A E IR+ ++ Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E + ++A++ LP +LF+ T I T + + + + V I+A+ + GK + Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 ++DD +I++ Y +R+ + + + L+ + Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492 Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532 L + Q D ++ + +I Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524 >gi|328676719|gb|AEB27589.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Francisella cf. novicida Fx1] Length = 522 Score = 299 bits (766), Expect = 9e-79, Method: Composition-based stats. Identities = 97/567 (17%), Positives = 216/567 (38%), Gaps = 71/567 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + S+ +W +A L G + +++ ++L L+ + E R + + Sbjct: 4 AKNKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAE--- 60 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114 + ID+ F FY E S + ++++ S I + + K Sbjct: 61 GKEAFIDMVEFY-TMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGA 119 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 D FS + K L + + I D + ++ +YE+ + +F +G Sbjct: 120 LPDNYFSRLGLDVSK---LSSLIDTINNINTIADKG-NDIVGRVYEYFLSKFAIAEGKGK 175 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ +V+L ++ +YDP CG+GG ++ + + Sbjct: 176 GEFYTPKSIVNLIANMI-----------EPYKGKIYDPACGSGGMFVQSIKFIEAHKGN- 223 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + +GQE T+ + + IR + ++ + T KD + + Sbjct: 224 --KKDISIYGQEYTGTTYKLAKMNLAIRGISANLGDVPA------DTFFKDQHPDLKADF 275 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + ++ + R+ G +P S+ + +++++ +KL + Sbjct: 276 IMANPPFN------QKDWRGANELLDDPRWAGYDVPPKSNANYGWILNIVSKL----SQN 325 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G A +L++ L G E +IR+ L+ENDL+EAI+ LP ++F+ TNI+ +WIL+ Sbjct: 326 GVAGFILANGALSGGGE---EYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWILNAN 382 Query: 414 KTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 K + +R ++ ++ K +++ ++I D Y + + Sbjct: 383 KKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEK---KFIQFDEENIQEISDTYHTWQ 439 Query: 461 -NGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + + + + Y + + + + L + ++ + Sbjct: 440 SDKEAYQDIP----EYCKSVTLEEVRAKDYSLVPSKYIEFVNRDENIDFDEKMKNLQTEF 495 Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEA 545 + + Q+ + KE + Sbjct: 496 RELLKQEEQSKQELLTVFKELGYEIKL 522 >gi|330684125|gb|EGG95874.1| type I restriction-modification system, M subunit [Staphylococcus epidermidis VCU121] Length = 518 Score = 299 bits (766), Expect = 9e-79, Method: Composition-based stats. Identities = 116/546 (21%), Positives = 204/546 (37%), Gaps = 70/546 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVRE 57 L +W A DL G+ ++F IL R L AL E Sbjct: 9 QQQQELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEAEVADALADEDVTYEE 68 Query: 58 KYLAFGGSNIDLESFVKVAGY------------SFYNTSEYSLSTLGSTNTRNNLESYIA 105 + E ++ GY + + L + + Sbjct: 69 AWEDDEYREDLKEELLENVGYYIEPQDLFSSMVKEIENQRFDIEHLAQAIRKVETSTLGQ 128 Query: 106 SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 ++ +F D D SST RL ++ L+ K+ + + + + ++ + YE Sbjct: 129 DSEEDFIGLFSDMDLSST--RLGNTVKDRTALIGKVMIHLAELPFVHSDMEIDMLGDAYE 186 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI RF + + A +F TP+ V + ++ D L R +YDPTCG+G L Sbjct: 187 FLIGRFAANAGKKAGEFYTPQQVSKILAKIVTQGKDQL--------RNVYDPTCGSGSLL 238 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 K + +GQE T+ + ML+ + R + +IQ Sbjct: 239 LRVG----------KETKVYRYNGQERNNTTYNLARMNMLLHDV-----RYENFDIQNAD 283 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL F ++F ++NPP+ KW D + E + L S F+ Sbjct: 284 TLENPAFMEEKFDAVVANPPYSAKWSADSQFNDDERFSNY-----GKLAPKSKADYAFIQ 338 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399 H+ + L+ G A+VL LF G A E IR++L+E + I+A++ LP ++F+ Sbjct: 339 HMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYIDAVIGLPANIFY 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + + +K E V I+A+ + GK + + DD QI+D Y R Sbjct: 392 GTSIPTCILVF--KKCREANDNVVFIDASQSFEK----GKNQNHLTDDDVNQIVDTYSKR 445 Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 E K+S + + P + ++ + + + + +I Sbjct: 446 ETIDKYSYVASLDDIKDNDYNLNIPRYVDTFEEEEPIDLDQVQQDLKNIDKEIADVESEI 505 Query: 519 LKPMMQ 524 + + + Sbjct: 506 NEYLKE 511 >gi|319945007|ref|ZP_08019269.1| type I modification enzyme [Lautropia mirabilis ATCC 51599] gi|319741577|gb|EFV94002.1| type I modification enzyme [Lautropia mirabilis ATCC 51599] Length = 571 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 109/600 (18%), Positives = 198/600 (33%), Gaps = 115/600 (19%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----------- 57 L +W A+ L + + ++L L+ + A E + +RE Sbjct: 10 NDLEKKLWTAADKLRSNLDAAVYKHIVLGLIFLKYVSDAFEERQRELREQFTNPDHDYYM 69 Query: 58 -----------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----------- 95 +Y + +++ + F+ E TL Sbjct: 70 DPDEYGGAGTLEYEDNIATELEVRDYY-TEKNVFWVPLEARWQTLRDCAQLPPKAALPWN 128 Query: 96 ---------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 +N + + K + DF+ +L+ + L + +F Sbjct: 129 KPGKDEPEEMRSVGWLIDNAMEAVERENARLKNVLNK-DFARV--QLDSSK-LAGLISHF 184 Query: 141 SGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 S + D ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 185 SDTDFSAKEYKGQPLDLKSKDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEML- 243 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPE 250 +YDP G+GGF + + G + +GQE P Sbjct: 244 ----------QPFKGRVYDPAMGSGGFFVQSEEFIEQHGGKATNGKSGQISVYGQESNPT 293 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 T + M IR ++ + + TL DL R + ++NPPF K Sbjct: 294 TWRLAAMNMAIRGIDFNFGSGPA------DTLLNDLHPDLRADFVMANPPFNMKEW---- 343 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 K R+ G P + + +L H+ L G A ++ + S N Sbjct: 344 ---WNEKLAADPRWIAGTPPQGNANFAWLQHMLWHLAPT---GSMALLLANGSMSSNTNN 397 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGK 421 E EIR+ L+E+D +E +VALP LF T I +W L+ +K +RRGK Sbjct: 398 ---EGEIRKRLVEDDYVECMVALPGQLFTNTQIPACIWFLTRDKQNGFALDKKKRDRRGK 454 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYRTFG 474 I+A + R + ++I D + + + G+ F Sbjct: 455 FLFIDARQMGYMKDRV---LRDFTVEDIQKIADTFHAWQQGEGYEDVPGFCHSAKLDEIR 511 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI--LKPMMQQIYPYGWA 532 VL P R ++ A+ R + L + F + + + G+A Sbjct: 512 KHEH-VLTPGRYVGAAEQEDDGEPFAEKMQRLTAQLAEQFVESAKLEAEIKKNLAGLGYA 570 >gi|28377765|ref|NP_784657.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus plantarum WCFS1] gi|28270598|emb|CAD63502.1| site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus plantarum WCFS1] Length = 528 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 108/487 (22%), Positives = 199/487 (40%), Gaps = 71/487 (14%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-A 61 E A L +W A DL G+ +++ IL R L +E + + + Sbjct: 5 EQAEQQAELQKRLWAVANDLRGNMDASEYRNYILGLIFYRFLSEKVENYANELLQDDDVD 64 Query: 62 FGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLG-------------STNTRNNLESY 103 F + D + + F+ Y +T+ S Sbjct: 65 FADAEQDADLMQDLKDEVIDVLGFFIEPRYLFTTMVKKINAGDFDVEMLQNAINEVQNST 124 Query: 104 IASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + S+N K +FED D +RL +++ L+ K+ + S I+ + ++ + Sbjct: 125 LGKESENDFKGLFEDLDL--QSSRLGNTVAKRSELIAKVILSLSNIDFGEQDIKIDILGD 182 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI +F + + A +F TP+ V L ++ D ++T+YDPT G+G Sbjct: 183 AYEYLIGQFAASAGKKAGEFYTPQQVSKLLARIVTAGKD--------RLKTVYDPTMGSG 234 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L N+ I +GQE+ T+ + +L+ + + +++ Sbjct: 235 SLLLQLGNYA----------TIGNYYGQEINGTTYNLARMNLLMHEVSYNR-----FDLR 279 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 QG TL +D F F ++NPP+ KW D ++ R S Sbjct: 280 QGDTLEEDHFDDLTFDAVVANPPYSAKWNPDDKLDDERF------RKYGKTAPKSKADFA 333 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTD 396 F+ H+ L G A+VL LF G A E +IR++++E+D +++A++ LP + Sbjct: 334 FVEHMLYHLNNE----GTMAVVLPHGVLFRGAA---EGKIRQYMIEHDNVLDAVIGLPAN 386 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T+I T + + + R + I+A++ + GK + + D+ +IL+ Sbjct: 387 LFYGTSIPTVVLVFKKGRE---RQDIFFIDASNDFEK----GKNQNNLTDENVDKILETL 439 Query: 457 VSRENGK 463 RE+ Sbjct: 440 EKREDVD 446 >gi|35381318|gb|AAQ84546.1| type I restriction-modification enzyme subunit M [Klebsiella pneumoniae] Length = 877 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 103/492 (20%), Positives = 190/492 (38%), Gaps = 80/492 (16%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 L + +W + ++L G + + +L ++ + Sbjct: 56 HMAIKKNELYSCLWASCDELRGGMDASQYKDYVLTLLFMKYVSD---------------- 99 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFD 119 G SF + L + + I ++ + K + + D Sbjct: 100 KAKGNPYAMIEVPEGASF-----DDMVALKGNKEIGEKINKTIRLLAEANDLKGVIDIAD 154 Query: 120 FSSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174 F+ +L K L K+ F G++L + V D ++ + YE+L+R F +E + Sbjct: 155 FNDE-DKLGKGKEMIDRLSKLVAIFEGLDLSANRVDGDDLLGDAYEYLMRHFATESGKSK 213 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V + ++ + T+YDPTCG+G L A + Sbjct: 214 GQFYTPAEVSRILAKVI------GISKETPQDATVYDPTCGSGSLLLKASDEA------- 260 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289 P L +GQE++ T A+ M++ + + I +G+TL+ + Sbjct: 261 -GPKGLTIYGQEMDYATSALARMNMILH-------DNATAKIWKGNTLADPHWKDGNDNL 312 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 K F + ++NPPF K + N RF G P +G FL+H+ L+ Sbjct: 313 KTFDFAVANPPFSNKN----WTSGLDAANDTFDRFVWGTPPEKNGDYAFLLHIIKSLKST 368 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+ A++L LF G A E+ IR LL+ I+ I+ LP +LF+ T I + + Sbjct: 369 ----GKGAVILPHGVLFRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIV 421 Query: 410 LSNRKTE--------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + + E + + +I+A+ + +G K R + +I+D + + Sbjct: 422 IDKEDAQLRAFNANGESQQGIFMIDASKGFI---KDGNKNR-LRAQDIHKIVDAFNREQE 477 Query: 462 -GKFSRMLDYRT 472 +FSRM+ Sbjct: 478 IPRFSRMVPLSE 489 >gi|314950056|ref|ZP_07853344.1| type I restriction-modification system, M subunit [Enterococcus faecium TX0082] gi|313643614|gb|EFS08194.1| type I restriction-modification system, M subunit [Enterococcus faecium TX0082] Length = 492 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 116/490 (23%), Positives = 195/490 (39%), Gaps = 74/490 (15%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPT 51 MTE + SL +W +A+ L ++ +L + L LE Sbjct: 1 MTEQIEKNSKSLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60 Query: 52 RSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYI 104 + + AF ++I + ++ Y + T + LE + Sbjct: 61 TDDLNKAQDLYVEAFKDADIKDDLLYELKDEFSYTIAPALTFTAQVAAIHDGSFQLEDLV 120 Query: 105 ASF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 F S+N + +FED D S +L ++ + + K G+ Sbjct: 121 QGFRDIEQSSENFENLFEDIDLYSK--KLGSTPQKQNKTIADVMKELEGLN--MAGHAGD 176 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V+ + YE+LI +F SE + A +F TP+ V L T ++L + ++YD T Sbjct: 177 VLGDAYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKED------KKGFSVYDAT 230 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L +A + P + GQEL T+ + M++ + + Sbjct: 231 MGSGSLLLNAKKYSHQ-------PGTISYFGQELNTSTYNLARMNMILHGV-----PIAN 278 Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +++ TL +D T + F L NPP+ KW DK ++ RF L Sbjct: 279 QHLHNADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD-------DPRFSAYGVLA 331 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H L+ G AIVL LF G A E +IR+ LLEN I+ Sbjct: 332 PKSKADFAFLLHGYYHLKDT----GVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDT 384 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++FF T+I T + IL + ++ V I+A+ + I+ + + D Sbjct: 385 VIGLPANIFFNTSIPTTVIILKKDRAKK---DVLFIDASQDFEKIKT----QNTLRDYHI 437 Query: 450 RQILDIYVSR 459 IL+ Y +R Sbjct: 438 DAILEAYKTR 447 >gi|262369032|ref|ZP_06062361.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii SH046] gi|262316710|gb|EEY97748.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii SH046] Length = 533 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 111/532 (20%), Positives = 208/532 (39%), Gaps = 82/532 (15%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------------LEPTRSAVRE 57 W A L G +F IL F + L L+ Sbjct: 25 WNIANTLRGTMGADEFRDYILGFIFFKYLSEKSVNFANELLDGEDLSFLELDENNPEHVP 84 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + I + F+ +E ++L + + S + Sbjct: 85 YIEEIKKNAIAEVGYALTPKQLFHTLAE---RGRQGEFILDDLTATLKSIEQSTLGTDSA 141 Query: 118 FDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 DF++ L ++ L+ K+ + I+ V+ + YE+LI Sbjct: 142 DDFANLFEDLDLNSTKLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYLIGE 201 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F S + A +F TP+ V L ++ D +R++YDPTCG+G L Sbjct: 202 FASGAGKKAGEFYTPQTVSTLLAKIVTQGKD--------RLRSVYDPTCGSGSLLLRVKR 253 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 V D + + +GQE+ T+ + M++ + +I+Q +TL++ Sbjct: 254 EVKD---------VDMIYGQEMNRTTYNLARMNMVLHDVHF-----AKFDIKQENTLTRP 299 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLA 343 K+F ++NPPF KW D ++ E RF L S M F+ H+ Sbjct: 300 QHLDKKFDAVVANPPFSAKWSADPLFLQDE-------RFAAYGKLAPSSKADMAFVQHML 352 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402 +L + G A+VL LF G S E IR++L+E ++++AI+ LP ++F+ T+ Sbjct: 353 YQL----DDNGTMAVVLPHGILFRG---SSEGVIRQYLIEQMNVVDAIIGLPANIFYGTS 405 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 I T + +L +K+ E+ G + I+A++ + +N + + + +I+ + REN Sbjct: 406 IPTCILVL--KKSREQSGNILFIDASNDFEKQKN----QNKLLPEHLDKIVAAFEKRENI 459 Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + ++ + + + P ++ A ++ D ++L L Q Sbjct: 460 EKYAHVATLQEVKDNDYNLNIP---RYVDTFEAEAEIDLDAIAKQLQALEQD 508 >gi|257880781|ref|ZP_05660434.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecium 1,230,933] gi|257891263|ref|ZP_05670916.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecium 1,231,410] gi|257815009|gb|EEV43767.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecium 1,230,933] gi|257827623|gb|EEV54249.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecium 1,231,410] Length = 540 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 120/565 (21%), Positives = 216/565 (38%), Gaps = 75/565 (13%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPT 51 MTE + SL +W +A+ L ++ +L + L LE Sbjct: 1 MTEQIEKNSKSLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60 Query: 52 RSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYI 104 + + AF ++I + ++ Y + T + LE + Sbjct: 61 TDDLNKAQDLYVEAFKDADIKDDLLYELKDEFSYTIAPALTFTAQVAAIHDGSFQLEDLV 120 Query: 105 ASF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 F S+N + +FED D S +L ++ + + K G+ Sbjct: 121 QGFRDIEQSSENFENLFEDIDLYSK--KLGSTPQKQNKTIADVMKELEGLN--MAGHAGD 176 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V+ + YE+LI +F SE + A +F TP+ V L T ++L + ++YD T Sbjct: 177 VLGDAYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKED------KKGFSVYDAT 230 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L +A + P + GQEL T+ + M++ + + Sbjct: 231 MGSGSLLLNAKKYSHQ-------PGTISYFGQELNTSTYNLARMNMILHGV-----PIAN 278 Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +++ TL +D T + F L NPP+ KW DK ++ RF L Sbjct: 279 QHLHNADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD-------DPRFSAYGVLA 331 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H L+ G AIVL LF G A E +IR+ LLEN I+ Sbjct: 332 PKSKADFAFLLHGYYHLKDT----GVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDT 384 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++FF T+I T + IL + ++ V I+A+ + I+ + + D Sbjct: 385 VIGLPANIFFNTSIPTTVIILKKDRAKK---DVLFIDASQDFEKIKT----QNTLRDYHI 437 Query: 450 RQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 IL+ Y +R K++ + ++ + P + ++ + + ++ Sbjct: 438 DAILEAYKTRTIKDKYAYVAEFDEIVENDYNLNIPRYVDTFEEEEVIPLDSVSKSIQETK 497 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAE 533 ++ + + AE Sbjct: 498 AELAQAETELFNMLKELNGTTEEAE 522 >gi|226225491|ref|YP_002759597.1| type I restriction-modification system DNA methylase [Gemmatimonas aurantiaca T-27] gi|226088682|dbj|BAH37127.1| type I restriction-modification system DNA methylase [Gemmatimonas aurantiaca T-27] Length = 538 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 118/562 (20%), Positives = 208/562 (37%), Gaps = 88/562 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MTE + L N +WK A+DL G DF +L F LR L E R + + Y Sbjct: 1 MTE--ANQKQLGNTLWKIADDLRGAMDADDFRDYMLSFLFLRYLSDNYEAAARKELGKDY 58 Query: 60 LAFGGS--------------NIDLESFVKVAGYSFYNT-------SEYSLSTLGSTNTRN 98 GG + E ++ Y S S++ + + Sbjct: 59 PDTGGDARKVPLELWYANNRDDIPEFEKQMRRKVHYVIKPAHLWNSVASMARTQNEDLLK 118 Query: 99 NLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 L+ YI SF + +F + D S +L ++ L + + + L+ Sbjct: 119 TLQEGFKYIETESFESTFQGLFSEIDLGS--PKLGKTYADRNAKLCTVIQKIAE-GLNNF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F + + A +F TP+ + + +A++ + + Sbjct: 176 SADVDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLEN 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + V+ GQE T+ + ML+ ++ Sbjct: 236 VMDFACGSGSLLLNVRKRVSQADGTIG-----RIFGQEKNITTYNLARMNMLLHGVK--- 287 Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL + + F ++NPPF +W+ + G+ Sbjct: 288 --DTEFEIFHGDTLLNEWDMLRELNPARKPLFDAIVANPPFSYRWDPGESI-------GD 338 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L+ G AI+L LF G A E IR Sbjct: 339 DVRFKSHGLAPKSAADFAFLLHGFHYLKDE----GVMAIILPHGVLFRGGA---EERIRT 391 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ ++ LP +LF+ T I + +L K V INA + GK Sbjct: 392 KLLKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAAHFEK----GK 444 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 ++ + + +I+D Y R RR+++ + F L+ + + Sbjct: 445 RQNQLKPEHIGKIIDTYQHRTEAPR---------YSRRVEMDEIEKNDFNLNISRY--IS 493 Query: 500 ADITWRKLSPLHQSFWLDILKP 521 + ++ L +++ Sbjct: 494 TAVAEEEIDLAATHAELAVIED 515 >gi|307710636|ref|ZP_07647069.1| type I restriction-modification system, M subunit [Streptococcus mitis SK564] gi|307618579|gb|EFN97722.1| type I restriction-modification system, M subunit [Streptococcus mitis SK564] Length = 533 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 126/571 (22%), Positives = 214/571 (37%), Gaps = 73/571 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51 E T ++ SL +W +A+ L D+ +L + L + + Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 + E Y + E + V ++ E + + L LE F Sbjct: 62 LESALEVYRNYYEDAETHEDLLAVMKDELNYSIKPELTFTALVERVNEGTFQLEDLAQGF 121 Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 SD +FED D S +L ++ + + K + +++ ++ Sbjct: 122 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDQL------GFTIYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P +V GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 LD Y SRE KF+ + Y + P + ++ + + Sbjct: 440 LDAYKSREEIDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINTTNQAI 499 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 Q+ +LK + Q A++ +K+ +K Sbjct: 500 QNQTASLLKMLNQLHGTTPEADAELKKFLKE 530 >gi|167571302|ref|ZP_02364176.1| N-6 DNA methylase [Burkholderia oklahomensis C6786] Length = 528 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 100/547 (18%), Positives = 191/547 (34%), Gaps = 70/547 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65 L +W A+ L ++ ++L L+ + A + R + + Sbjct: 3 QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRVQLAAAFADGNDDLYL 62 Query: 66 -------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111 E F+ + TL + + ++ + I + + Sbjct: 63 PDAADHAEALEERDYYTMANVFWVPASARWETLRAQAKQADIGARIDAALEAIEADNPRL 122 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K I + + G L ++ S + ++ +YE+ + +F + Sbjct: 123 KGILDK----RFGRTQLEPGRLGELVDLISTVGFGEGHRAKDLLGEVYEYFLGQFATAEG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV + +L +YDP CG+GG + + G Sbjct: 179 KKGGQFYTPASVVKVLVEVLAPHQG-----------RVYDPCCGSGGMFVQSEKFIEAHG 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE P T + + IR +D ++ + T +D R Sbjct: 228 GKAD---DISIYGQEANPTTWRLVAMNLAIRGFAADLGKEPA------DTFHRDQHPDLR 278 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y L+NPPF + + E R+ G P ++ + +L H+ + L Sbjct: 279 ADYVLANPPFNISDWGGE-------RLTEDRRWSYGSPPAANANYAWLQHIVHHLSPR-- 329 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A +VL++ + + E +IRR +++ D+++ +VALP LFF T I LW L+ Sbjct: 330 --GQAGVVLANGSMSTN--QNSEGDIRRAMVDADVVDVMVALPPQLFFNTTIPACLWFLA 385 Query: 412 NRKT----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460 K+ +RR ++ I+A L R+ +D+ +I R Sbjct: 386 KDKSGGAVPGGKRGRDRRNEMLFIDARKLGRMETRVV---RVFDDEDIARIAATVHRWRA 442 Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 +G+ S Y G+ R +K+ +L E + + Sbjct: 443 DGEDSADELYTDVPGFCRAVKLAEIAEHGHVLTPGRYVGAEEAENDDEAFNEKMERLTSV 502 Query: 519 LKPMMQQ 525 L M + Sbjct: 503 LAEQMAK 509 >gi|257425924|ref|ZP_05602348.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257428591|ref|ZP_05604989.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257431226|ref|ZP_05607603.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus 68-397] gi|257433907|ref|ZP_05610265.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus E1410] gi|257436823|ref|ZP_05612867.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M876] gi|282904387|ref|ZP_06312275.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C160] gi|282911436|ref|ZP_06319238.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282914606|ref|ZP_06322392.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M899] gi|282924952|ref|ZP_06332618.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C101] gi|283958567|ref|ZP_06376018.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293503683|ref|ZP_06667530.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510700|ref|ZP_06669405.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M809] gi|293537241|ref|ZP_06671921.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M1015] gi|295428388|ref|ZP_06821017.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus EMRSA16] gi|257271618|gb|EEV03764.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275432|gb|EEV06919.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257278174|gb|EEV08822.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus 68-397] gi|257282000|gb|EEV12137.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus E1410] gi|257284174|gb|EEV14297.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M876] gi|282313318|gb|EFB43714.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C101] gi|282321787|gb|EFB52112.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M899] gi|282325131|gb|EFB55441.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282596005|gb|EFC00969.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus C160] gi|283790716|gb|EFC29533.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290920086|gb|EFD97154.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095349|gb|EFE25614.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466591|gb|EFF09112.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus M809] gi|295127788|gb|EFG57425.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus EMRSA16] gi|312437726|gb|ADQ76797.1| type I restriction-modification system DNA-methyltransferase [Staphylococcus aureus subsp. aureus TCH60] Length = 579 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + V++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 453 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y ++ Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 507 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 567 NAYLKELGVLKD 578 >gi|308178071|ref|YP_003917477.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] gi|307745534|emb|CBT76506.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] Length = 816 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 115/582 (19%), Positives = 219/582 (37%), Gaps = 95/582 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W +A++L G + + +L ++ + + +S++ Sbjct: 1 MALKKSDLYSSLWSSADELRGSMDASQYKDYVLTLLFVKYVSDKAKEDKSSLI------- 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDNAKAIFED 117 Y + S L S + ++ + + ++ + + Sbjct: 54 -----------------YVPDDGSFDYLVSLKGKPDVGEKVNIAVRRLAEENDLLGVINN 96 Query: 118 FDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSE 172 DF +L A L + F ++ D ++ + YE+L+R F ++ + Sbjct: 97 ADFDDP-TKLGDAKELQVKVSNLIGIFQDMDFTGSKAEGDDLLGDAYEYLMRHFATQSGK 155 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TP +V + LL P S T+YDPTCG+G L + Sbjct: 156 SKGQFYTPAEVSRVMAQLLQIP------ASTPKSTTVYDPTCGSGSLLIKVADA------ 203 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 P L +GQE + T A+ M++ E + +++QG+TL+ F Sbjct: 204 ---APNGLSIYGQENDNATWALARMNMILHGNE-------THDLRQGNTLADPKFINSGS 253 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLE 347 + F Y ++NPPF K + GRF G G P +G FL+H+ L Sbjct: 254 LQTFDYLVANPPFSVKTWT-------NGFDSSYGRFDGFGTPPDKNGDYAFLLHMIKSLR 306 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ +VL LF G E+ IR L++ I+AI+ LPT+LF+ T I L Sbjct: 307 PR----GKGVVVLPHGVLFRGN---SEARIRTELIKRGYIKAIIGLPTNLFYGTGIPACL 359 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 ++ + + R G + +I+A+ + +G K R + +I+D + + ++SR Sbjct: 360 IVIDKQDAQARTG-IFMIDASKGFA---KDGPKNR-LRPRDMHKIVDAFTGSKEIARYSR 414 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW-LDILKPMMQQ 525 M+ + P + ++ L+ A + L Q L+ + Sbjct: 415 MVPISE-------ITDP-KNNYNLNIPRYIDSSAPEDIQDLCAHMQGGIPNSDLEALQPY 466 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + S + ++ ++K I + + G Sbjct: 467 WDAFPSLRSELFAPLRDG---YSELKVQTGEIRSIVTGTGEY 505 >gi|297590647|ref|ZP_06949285.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus MN8] gi|297575533|gb|EFH94249.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus MN8] Length = 579 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + V++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 453 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y ++ Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 507 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 567 NAYLKELGVLKD 578 >gi|307704331|ref|ZP_07641248.1| type I restriction-modification system, M subunit [Streptococcus mitis SK597] gi|307622091|gb|EFO01111.1| type I restriction-modification system, M subunit [Streptococcus mitis SK597] Length = 533 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 124/556 (22%), Positives = 209/556 (37%), Gaps = 74/556 (13%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51 E T ++ SL +W +A+ L D+ +L + L + + Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 A E Y + E + V ++ E + + L + LE F Sbjct: 62 LEAALEVYRNYYEDADTHEDLLAVMKDELNYSIKPELTFTALVARVNEGTFQLEDLAQGF 121 Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 SD +FED D S +L ++ + + K + +++ ++ Sbjct: 122 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTRIAFLGREDQL------GFTIYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P +V GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y SRE KF+ + Y + P R ++ + L ++ + Sbjct: 440 LEAYKSREEIDKFAHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINTTNQA 498 Query: 512 QSFWLDILKPMMQQIY 527 L M+ Q++ Sbjct: 499 IQNQTASLLEMLGQLH 514 >gi|237807947|ref|YP_002892387.1| type I restriction-modification system, M subunit [Tolumonas auensis DSM 9187] gi|237500208|gb|ACQ92801.1| type I restriction-modification system, M subunit [Tolumonas auensis DSM 9187] Length = 805 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 103/483 (21%), Positives = 196/483 (40%), Gaps = 74/483 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L F ++ + Sbjct: 1 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTFLFMKYVSDRY--------------- 45 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF + L + + I++ ++ + K + + DF Sbjct: 46 -KGDPYGMIVIPLGASF-----DDMKALKGDKEIGDKMNKIISALAEENDLKGVIDVADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMIDRLSKLIGIFEGLDLSANRADGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + + ++ S T+YDPTCG+G L A + + Sbjct: 159 QFYTPSEVSRILSKVI------GIDASTPQDATVYDPTCGSGSLLLKASD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 L +GQE++ T A+ M++ + + I +G+TL + K Sbjct: 204 AERGLSIYGQEMDNATSALARMNMILHN-------NATAKIWKGNTLVDPQWKEANGQLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + RF G+P +G FL+H+ L+ Sbjct: 257 TFDFAVANPPFSNKNWTSGLNPNE----DPFDRFTWGIPPEKNGDYTFLLHIIKSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR LL+ I+ I+ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIVI 365 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469 + R+G + +I+A+ + +G K R + +++D++ + E ++SRM+ Sbjct: 366 DKAQAHSRKG-IFMIDASKGFI---KDGNKNR-LRAQDIHKVVDVFTKQLEQPRYSRMVP 420 Query: 470 YRT 472 Sbjct: 421 LSE 423 >gi|317494152|ref|ZP_07952568.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917925|gb|EFV39268.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 535 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 188/540 (34%), Gaps = 75/540 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----Y 59 + + L + +W A+ L G +F L F + L + + ++ Y Sbjct: 6 EAQNLSELQSRLWNIADTLRGKMNADEFRDYCLGFIFYKYLSEKFVTYANKILKEDGIKY 65 Query: 60 LAFGGSNIDLESFVKVAG------YSFYNTSEYSLSTLGST-----------NTRNNLES 102 + + + ++ T+ +L + Sbjct: 66 NELTAEHPAYQDIIDAVKDDSIQTLGYFLPPTDLFHTMAQRVAKDQKGAGEGFILEDLAT 125 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTV 150 + + + DFS+ L+ K L+ K+ + + Sbjct: 126 TLRNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVITELDKLSFNLSEA 185 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++ + YE+LI +F S + A +F TP+ V L ++ ++ +Y Sbjct: 186 SSDILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKL--------KLKNVY 237 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L + + +GQE+ T+ + M++ + Sbjct: 238 DPTCGSGSLL---------LRVKREASSVGKIYGQEMNRTTYNLARMNMILHGVHYADFE 288 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I Q TL T +F ++NPPF KW + + L Sbjct: 289 -----IMQEDTLEHPQHTHLKFDAIVANPPFSAKWSASPLFMNDDRFAQY-----GKLAP 338 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389 S M F+ H+ LE G A+VL LF G A E IR++++E + I+A Sbjct: 339 SSKADMAFVQHMFYHLEDD----GTMAVVLPHGVLFRGAA---EGHIRKFMIEQQNCIDA 391 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++F+ T+I T + +L RK + + I+A++ + ++ + + + Sbjct: 392 VIGLPANIFYGTSIPTCVLVL--RKCRKHNDGILFIDASNDFEKVKT----QNRLLPEHI 445 Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 +I D Y + K+S + + P + + + R L Sbjct: 446 DKIADTYNDWKALEKYSHIATLEEIRNNDYNLNIPRYVDTFEAEDEIDLNAVAKEIRNLE 505 >gi|293401669|ref|ZP_06645811.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304927|gb|EFE46174.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 508 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 99/540 (18%), Positives = 200/540 (37%), Gaps = 63/540 (11%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + A++ IW A LWG ++ KVI+ LR + A + + + E+ Sbjct: 1 MASNNANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFDKRYNELVEE--- 57 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKAI 114 G + + + F+ + S + ++ I + + K + Sbjct: 58 --GYGFENDRDAYIEENVFFVPEKARWSYISKNAHTHEIGKVIDDAMRAIEAENKTLKNV 115 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + + +L + F+ +++ ++ YE+ I+ F + Sbjct: 116 LPKNYATPDLDK----RVLGNVVDVFNCVDMKDTEDSKDLLGRTYEYCIQEFAAHEGVKG 171 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V +L P +YDP CG+GG ++ + + Sbjct: 172 GEFYTPSSIVKTIVEIL----------KPFDNCRVYDPCCGSGGMFVQSVKFLQAHSGNR 221 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + +GQE +T + M IR ++++ T +DL + + Sbjct: 222 N---RISVYGQESNADTWKMAKMNMAIRGIDANFGP------YHADTFFEDLHPTLKADF 272 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF K E R+ G+P + + ++ H+ + L G Sbjct: 273 IMANPPFNLSNWGQD-------KLKEDKRWVYGIPPAGNANFAWIQHMIHHLAP----NG 321 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 + +VL++ L SGE +IR+ ++E DLIE IVALPT LF+ I LW ++ K Sbjct: 322 KIGLVLANGAL--SSQTSGEGQIRKNIIEADLIEGIVALPTQLFYSVTIPVTLWFITKNK 379 Query: 415 TEERRGKVQLINATDL-WTSIRNEGKKRRIINDD----QRRQILDIYVSRENGKFSRMLD 469 +++GK I+A + + + R I +D ++ + + G + Sbjct: 380 --KQKGKTLFIDARKMGYMADRKHRDFTVGIQEDGSLGDVDKLAKTFELFQEGNLEDI-- 435 Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G+ ++ ++ +IL +E + L M ++ + Sbjct: 436 ---KGFCKVASTEDIIKQDYILTPGRYVGIEEQEDDGEPFDDKMKRLTSELSDMFKKSHE 492 >gi|219870605|ref|YP_002474980.1| Type I restriction-modification system methyltransferase subunit [Haemophilus parasuis SH0165] gi|219690809|gb|ACL32032.1| Type I restriction-modification system methyltransferase subunit [Haemophilus parasuis SH0165] Length = 562 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 99/570 (17%), Positives = 192/570 (33%), Gaps = 82/570 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65 L +WK A+ L ++ ++L L+ + + + ++++Y Sbjct: 28 LNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQEIIKQRYTDPTSDFY 87 Query: 66 ----------------NIDLESFVKVAGYSFYNTSEYSLSTLG---STNTRNNL--ESYI 104 E F+ + + N + + E Sbjct: 88 LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTF 147 Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151 ++ F+ + I R+ +L + FS T+ Sbjct: 148 KGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVDESILLGLIDLFSDTNFTRPTLDGKPI 207 Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 208 SLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYKG 256 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGF + + + + GQE P T + M IR +E D Sbjct: 257 RIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEFD 313 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + + T S K+ + ++NPPF K + R+ G Sbjct: 314 FGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWNESLAQDPRWQYG 360 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 +P + + +L H+ L GR A++L++ + + E EIR+ +L+ DL+ Sbjct: 361 IPPEGNANFAWLQHMIYHLSP----NGRMALLLANGSMSSNTNN--EGEIRKNILKADLV 414 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ALP+ LF T I +WIL+ K +G+V I+A L R D Sbjct: 415 EAMIALPSQLFTNTQIPACIWILNKNKAR--KGEVLFIDARQLGYMKDRV---LRDFTAD 469 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506 ++ D Y S + + + F Y + + F+L E + Sbjct: 470 DIAKVADTYHSWQQS--ADYQNIPAFCYTA-SLDEIAQNDFVLTPGRYVGAAEQEDDGVP 526 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q + + Q ++ + Sbjct: 527 FAEKMQELTALLQQQFQQSAELEAKIKANL 556 >gi|329732563|gb|EGG68913.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 21193] Length = 518 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 118/545 (21%), Positives = 206/545 (37%), Gaps = 68/545 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LEIPAFLGTTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P + ++ + + + + +I Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEEPIDLDQVQQDLKNIDKEIAEIEQEIN 506 Query: 520 KPMMQ 524 + + Sbjct: 507 AYLKE 511 >gi|218263900|ref|ZP_03477848.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii DSM 18315] gi|218222411|gb|EEC95061.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii DSM 18315] Length = 510 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 102/485 (21%), Positives = 189/485 (38%), Gaps = 62/485 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65 + L +F+W A L G + + I P +R+ + V E + + G Sbjct: 16 TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112 ++ G + + N N L I + + Sbjct: 76 QVEDLPIRIPDGAH------WRDVREVTENVSNKLVEAFIAIEQANPAKEMDGRKIGGLE 129 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF D + A++ + ++ + ++FS L P M YE+L+ +F + Sbjct: 130 GIFGPKDGWTNKAKMPDS-IITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A++F T R VV L +L P ++YDPTCG+GG L ++++ + G Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPKPNESIYDPTCGSGGMLVKCLDYLRNKG- 237 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 + + GQE+ T ++ + + +E +I TL F Sbjct: 238 --EEWQSVQVFGQEVNGLTSSIARMNLYLNGVE-------DFSIVCADTLEHPAFLDGSH 288 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F L+NPP+ K ++ N + GR G P FL H+ + Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFLQHIIASMNE 343 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR AI+ LF E E+R+ L+E D+++ I+ L +LF+ + + + Sbjct: 344 TQ---GRCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACIL 396 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRM 467 I + K ++ +V +INA + T ++ + ++I++ Y +RE FSR+ Sbjct: 397 ICNCSKANSKKNRVLMINAVNEVTR----KNAESMLLAEHIQRIVNAYQQNRELDGFSRI 452 Query: 468 LDYRT 472 + Sbjct: 453 VSNDE 457 >gi|124002924|ref|ZP_01687775.1| type I restriction-modification system, M subunit [Microscilla marina ATCC 23134] gi|123991574|gb|EAY30982.1| type I restriction-modification system, M subunit [Microscilla marina ATCC 23134] Length = 538 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 118/580 (20%), Positives = 206/580 (35%), Gaps = 88/580 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKY 59 MT+ L + +WK A++L G F +L F L+ L E + + Y Sbjct: 1 MTQ-QEQHNQLGSTLWKIADELRGAMNADSFRDYMLSFLFLKYLSSNYEEAAKRELGSDY 59 Query: 60 LAFGGSNID---------------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 G E ++ Y L S R+ E + Sbjct: 60 PKLDGEEDTRTPLSIWYAANADDVPEFEAQMRKKVHYVIEPIYLWKSISELARSQHEDLL 119 Query: 105 ------------ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 SF + +F + S E+ L I S + + Sbjct: 120 KTLKEGFKYIENESFESAFQGLFSEIHLDSEKLGKNTTERNKRLCTIVSKISA-GIAEFS 178 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + + YE+LI +F + + A +F TP+ + + + ++ + + Sbjct: 179 TDSDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISGILSEIVTLDCQNPAAGKKKKLEHV 238 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 D CG+G L + + G +GQE T+ + ML+ ++ Sbjct: 239 LDFACGSGSLLLNVRKRMVQAGGSTGK-----IYGQEKNVTTYNLARMNMLLHGMK---- 289 Query: 270 RDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D +I G TL + +F ++NPPF +W+ D E Sbjct: 290 -DTEFDIFHGDTLLNQWGVLNEMNPAKKPKFDAIVANPPFSLRWDSSSD-------LAED 341 Query: 322 GRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 RF G GL S FL+H + L + G I+L LF G A E IR Sbjct: 342 FRFRGYGLAPKSAADFAFLLHGFHYL----SDNGTMTIILPHGVLFRGGA---EERIRTK 394 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LL+++ I+ ++ LP++LF+ T I + +L K R V INA++ + GK+ Sbjct: 395 LLKDNHIDTVIGLPSNLFYSTGIPVCILVL---KKCTRANDVLFINASEHFDK----GKR 447 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 + +N+D +I+D Y R+ + +R+ + + L+ T Sbjct: 448 QNALNEDHIAKIIDTYQHRKEEER---------YSQRVTMAEIEEQGYNLNITRYVSTAK 498 Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWA-ESFVKES 539 L ++ L+ + + I + A F+KE Sbjct: 499 PEPKVDLKEVNAE-----LRTVNKDIKKHTDAHNEFLKEL 533 >gi|296453353|ref|YP_003660496.1| type I restriction-modification system subunit M [Bifidobacterium longum subsp. longum JDM301] gi|296182784|gb|ADG99665.1| type I restriction-modification system, M subunit [Bifidobacterium longum subsp. longum JDM301] Length = 520 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 122/559 (21%), Positives = 206/559 (36%), Gaps = 75/559 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------ALEPTRS 53 MT A L IW A L G DF + +L F R + E Sbjct: 1 MTNSGAQRAELHKAIWNIANVLRGSVDGWDFKQYVLGFLFYRFISEDITSYLNGYEHQAG 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSDNA- 111 V Y + + V ++ + + + + NL + N Sbjct: 61 DVDFDYAKLDDATAEQVRKSMVEEKGYFILPSDLFANVRNRADGDENLNETLQRVFKNIE 120 Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-- 152 + +F+D D +S +L E+ L K+ ++L ++ D Sbjct: 121 GSAIGSRSESSLRGLFDDLDLNS--RKLGDTVVERNAKLVKVLNAIGNLDLGTESFADNT 178 Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE+L+ + + + +F TP++V L T + + K +YD Sbjct: 179 IDAFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIATHGKSEVNK--------VYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L ++ + K GQE T+ +C M + + D Sbjct: 231 PACGSGSLLLQSIKVL------GKDKVRQGFFGQEKNLTTYNLCRINMFLHDVNYD---- 280 Query: 272 LSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 NI G TL + F +SNPP+ KWE D + RF P L Sbjct: 281 -HFNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPT-----LINDPRFSPAGVL 334 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F MH+ + L G AAIV L+ G E +IR++LLE + I+ Sbjct: 335 APKSKADLAFTMHMLSWLAAD----GTAAIVEFPGVLYRGGK---EQKIRKYLLEKNFID 387 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 A++ LP +LFF T+IAT + +L K ++ V I+A++ + + N + ++ D Sbjct: 388 AVIQLPPNLFFGTSIATCIIVLRKSKNDDS---VLFIDASERFVHVGN----QNQLSPDD 440 Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWR 505 I+D YV RE + FS + + + + +A L I+ Sbjct: 441 IAAIMDAYVKREPVEHFSAVASLEDIRKNDYVLSVSSYVQPKDTREKIDIAALNRQISDI 500 Query: 506 KLSPLHQSFWLDILKPMMQ 524 +D + ++ Sbjct: 501 VARENELRTQIDAIIADLE 519 >gi|49484057|ref|YP_041281.1| type I restriction modification system modification protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49242186|emb|CAG40888.1| type I restriction modification system modification protein [Staphylococcus aureus subsp. aureus MRSA252] gi|315195725|gb|EFU26112.1| type I restriction modification system modification protein [Staphylococcus aureus subsp. aureus CGS00] Length = 518 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + V++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y ++ Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|311063620|ref|YP_003970345.1| type I restriction-modification system methyltransferase subunit [Bifidobacterium bifidum PRL2010] gi|310865939|gb|ADP35308.1| Type I restriction-modification system methyltransferase subunit [Bifidobacterium bifidum PRL2010] Length = 520 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 124/562 (22%), Positives = 206/562 (36%), Gaps = 81/562 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT A L IW A L G DF + +L F R + E S + E Sbjct: 1 MTNSGTQRAELHKTIWSIANVLRGSVDGWDFKQYVLGFLFYRFIS---EDITSYLNEYEH 57 Query: 61 AFGGSNIDLESFVKVAGYS-----------FYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 G + D F S+ + + NL + Sbjct: 58 QAGDVDFDYAKLDDATAEQVRKSMVEEKGYFILPSDLFANVRRCADADENLNETLQRVFK 117 Query: 110 NA-------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151 N + +F+D D +S +L ++ L K+ ++L ++ Sbjct: 118 NIEGSAIGSRSESSLRGLFDDLDLNS--RKLGDTVVDRNAKLVKVLNAIGDLDLGTESFA 175 Query: 152 D---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 D + YE+L+ + + + +F TP++V L T + + K Sbjct: 176 DNKIDAFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIATHGKSEVNK-------- 227 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L ++ + K GQE T+ +C M + + D Sbjct: 228 VYDPACGSGSLLLQSIKVL------GKDKVRQGFFGQEKNLTTYNLCRINMFLHDVNYD- 280 Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 NI G TL + F +SNPP+ KWE D + RF P Sbjct: 281 ----HFNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPT-----LINDPRFAPA 331 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L S + F MH+ + L G AAIV L+ G E +IR++LLE + Sbjct: 332 GVLAPKSKADLAFTMHMLSWLAAD----GTAAIVEFPGVLYRGGK---EQKIRKYLLEGN 384 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+A++ LP +LFF T+IAT + +L K ++ V I+A++ + + N + ++ Sbjct: 385 FIDAVIQLPPNLFFGTSIATCIIVLKKSKNDDS---VLFIDASERFVHVGN----QNQLS 437 Query: 446 DDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADI 502 D I+D YV RE + FS + + + + +A L I Sbjct: 438 PDDIAAIMDAYVKREPVEHFSAVASLEDIRKNDYVLSVSSYVQPKDTREKIDIAALNRQI 497 Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524 + +D + ++ Sbjct: 498 SDIVARESELRTQIDAIVADLE 519 >gi|302878640|ref|YP_003847204.1| type I restriction-modification system, M subunit [Gallionella capsiferriformans ES-2] gi|302581429|gb|ADL55440.1| type I restriction-modification system, M subunit [Gallionella capsiferriformans ES-2] Length = 553 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 103/545 (18%), Positives = 200/545 (36%), Gaps = 86/545 (15%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLE------------------CALEPTRSAVRE 57 W A L G +F IL F + L AL+ + R Sbjct: 36 WNIANTLRGKMGADEFRDYILGFIFYKYLSEKIQRFADAELAQENLHFAALKESTEEGRA 95 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTS-----EYSLSTLGSTN--TRNNLESYIASFSDN 110 A + + + F+ + + LG ++ +L + + + Sbjct: 96 YIAALEEAALGELGYFLKPSELFHAIAMKGSNQEDEHKLGDSHNFILADLTRILKNIEQS 155 Query: 111 AKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 DF + L+ K L+ K+ + I+ + V+ + Sbjct: 156 TLGTESADDFVNLFEDLDLTSSKLGNSEKEKNALVAKVLTHLDKIDFNLSDSTADVLGDA 215 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI F S + A +F TP+ V L L+ ++++YDPTCG+G Sbjct: 216 YEYLIGEFASGAGKKAGEFYTPQPVSTLLAKLVTA--------QKQTLKSVYDPTCGSGS 267 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + +GQEL T+ + M++ + +I+Q Sbjct: 268 LL---------LRVKREAKQVDKIYGQELNRTTYNLARMNMILHDVH-----YADFDIKQ 313 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSM 336 TL + RF ++NPPF +W + + + RF L S M Sbjct: 314 EDTLERPQHRELRFDAIVANPPFSAQWSASQLHMSDD-------RFSVYGKLAPASKADM 366 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395 F+ H+ +L G A+VL LF G A E IR++L+E + ++A++ LP Sbjct: 367 AFVQHMVYQLAEE----GTMAVVLPHGVLFRGAA---EGHIRQYLIEQLNCLDAVIGLPA 419 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 ++F+ T+I T + + +K + + I+A+ + ++ ++ + ++I+D Sbjct: 420 NIFYGTSIPTCVLVF--KKCRKNPDNILFIDASQHFDKVKTT----NVMRPEHIQKIVDT 473 Query: 456 YVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 Y +R K+S + + + P ++ ++ + +L L ++ Sbjct: 474 YKARSNEEKYSHVASIESIKANDYNLNIP---RYVDTFEAEEAIDLAVISAQLIELDKAS 530 Query: 515 WLDIL 519 Sbjct: 531 LTTDA 535 >gi|116627584|ref|YP_820203.1| type I restriction-modification system methyltransferase subunit [Streptococcus thermophilus LMD-9] gi|116100861|gb|ABJ66007.1| Type I restriction-modification system methyltransferase subunit [Streptococcus thermophilus LMD-9] Length = 534 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 121/595 (20%), Positives = 215/595 (36%), Gaps = 94/595 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49 M+E T ++ SL +W +A+ L D+ +L + L + Sbjct: 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60 Query: 50 PTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105 + Y + E + S+ + + + L + LE Sbjct: 61 ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120 Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F SD +FED D S +L ++ + + K + +++ + Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F ++ + A +F TP+ V L T + + TLYD T Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + P +V GQEL T+ + M++ + + + Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 + TL +D F L NPP+ KW ++ RF P L Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E IR+ LLE I+ + Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++FF T+I T + IL +T V I+A+ + GK + I+ D Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +IL+ Y SRE+ + + + + + ++ + Sbjct: 439 KILNAYKSREDMD---------------------KFAHLASFEEIVENDYNLNIPRYVDT 477 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564 + ++ L ++ +I S+ + + AF+ AF Sbjct: 478 FEEEEVEPLTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEADKELKAFVEAF 532 >gi|328471218|gb|EGF42120.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus 10329] Length = 544 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 99/500 (19%), Positives = 176/500 (35%), Gaps = 77/500 (15%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + N W + G + IL ++ + + +++Y Sbjct: 6 NDKIQQKDINNAAWAACDTFRGAVDPAQYKDYILVMLFVKYISDVWNDHYAEYKKQYGDD 65 Query: 63 GG------------------SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + K +T + +L N+ I Sbjct: 66 DVRIRRKLERERFVLPMVELTEEVEDPATKEKKTVVTDTFLANYYSLLERKNEPNIGELI 125 Query: 105 A--------SFSDNAKAIFEDFDFS---STIARLEKAGLLYKICKNFSG--IELHPDTVP 151 + + +F + DF+ + ++ L + +F+ +++ P V Sbjct: 126 NIVLEHIETANKAKLEGVFRNIDFNSEANLGKTKDRNRRLKTLLDDFNKPALDMSPSRVS 185 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + V+ N Y +LI RFGS+ + A +F TP V L L +P + D Sbjct: 186 EDVIGNTYIYLIERFGSDAGKKAGEFYTPHKVSELVARL----------SAPKSGARICD 235 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+ G L +A V D +G E+ T A+ M + + Sbjct: 236 PACGSAGLLIEAARQVGDRN--------YSLYGMEVNGSTWALARMNMFLHGSDF----- 282 Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 I+ +TL+ +F ++NPPF D E R+ G Sbjct: 283 --ARIEWCNTLTSPALVENDRLMKFDNVVANPPFSLDKWGADDVTEDR-----YNRYWRG 335 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP S F+ H+ E GR A+V+ LF G A E IR+ L+E +L+ Sbjct: 336 LPPKSKADFAFISHMV---EAAVEKEGRIAVVVPHGVLFRGAA---EGRIRQKLIEENLL 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRI 443 +A++ LP +LF T I + I + + E R V ++A+ GK + I Sbjct: 390 DAVIGLPGNLFPSTGIPVAILIFDRSREKGGANENRKDVLFVDASGKDHY--QAGKNQNI 447 Query: 444 INDDQRRQILDIYVSRENGK 463 + D+ +I+ +R + Sbjct: 448 LLDEHLDKIVAAVTARNEVE 467 >gi|153807714|ref|ZP_01960382.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185] gi|160886164|ref|ZP_02067167.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483] gi|160889102|ref|ZP_02070105.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492] gi|149129323|gb|EDM20537.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185] gi|156108049|gb|EDO09794.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483] gi|156861569|gb|EDO55000.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492] Length = 510 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 99/476 (20%), Positives = 183/476 (38%), Gaps = 61/476 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65 + L +F+W A L G + + I P +R+ + V E + + G Sbjct: 16 TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112 ++ G + + N N L I + + Sbjct: 76 QVEDLPIRIPDGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF D + A++ ++ + ++FS L P M YE+L+ +F + Sbjct: 130 GIFGPKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A++F T R VV L +L P ++YDPTCG+GG L ++++ + G+ Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGA 238 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 + GQE+ T ++ + + +E +I TL F Sbjct: 239 E---WQSVQVFGQEVNGLTSSIARMNLYLNGVE-------DFSIACADTLEHPAFLDGSH 288 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F L+NPP+ K ++ N + GR G P F H+ ++ Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFFQHIIASMDR 343 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR AI+ LF E E+R+ L+E D+++ ++ L +LFF ++ + Sbjct: 344 NT---GRCAILFPHGVLFRDE----EYELRKKLVEIDIVDCVIGLGPNLFFNASMEACII 396 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 I NRK + +GKV I+A + + + ++I+ Y + E+ ++ Sbjct: 397 ICKNRKEDSHKGKVIFIDAKGE----VSRKNAESYLENTHIQKIISAYENFEDIEY 448 >gi|78046069|ref|YP_362244.1| type I site-specific deoxyribonuclease (modification subunit) [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034499|emb|CAJ22144.1| type I site-specific deoxyribonuclease (modification subunit) [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 538 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 113/575 (19%), Positives = 213/575 (37%), Gaps = 91/575 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT+ L +W A+ L G DF +L F LR L E + + Y Sbjct: 1 MTKDDQK--ELGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGSDY 58 Query: 60 LAFGGSN---------------IDLESFVKVA--GYSFYNTSEYSLSTLGSTNTRN--NL 100 D+ +F + + +Y + + +L Sbjct: 59 PDAKAIGNSDKTPLSVWYAANPDDVAAFEQQMRRKAHYVIKPKYLWGNIVNLAKTQSHDL 118 Query: 101 ESYI---------ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELH 146 + SF + +F + + +S +L ++ L I + Sbjct: 119 LDTLQQGFKHIEEDSFESEFQGLFSEINLAS--DKLGRKYDDRNAKLCSIISEIARGMAL 176 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+LI +F + + A +F TP+++ ++ +A++ G + Sbjct: 177 STKTDS--LGDAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEPKTGPRGKL 234 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +++D CG+G L + N + G +GQE T+ + ML+ ++ Sbjct: 235 DSVFDFACGSGSLLLNIRNRMTSSGGSIGK-----IYGQEYNVTTYNLARMNMLLHGVK- 288 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 D I G TL D + RF ++NPPF +WE + + Sbjct: 289 ----DTEFEIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQ----- 339 Query: 319 GELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 RF G+ S FL+H L+ G AI+L LF G E++I Sbjct: 340 --DARFKNHGVAPKSAADFAFLLHGLQYLKDD----GVMAIILPHGVLFRGGK---EADI 390 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 RR LL++ I+ ++ LP +LF+ T I + +L K V INA + +T Sbjct: 391 RRKLLDDGHIDTVIGLPPNLFYSTGIPVCILVLKKCKKP---DDVLFINACEQFTR---- 443 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 GK++ + D+ ++I+D Y +R+ + +RI + R + L+ + Sbjct: 444 GKRQNQLTDEHIKRIVDTYKNRDEQER---------YSKRISMTRIAEEGYNLNISRY-- 492 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 + ++++ L ++ +++ A Sbjct: 493 VSTAKADKEINLEAVHVDLKAIESELEKAKKRHNA 527 >gi|329731922|gb|EGG68280.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 21193] Length = 518 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 118/552 (21%), Positives = 203/552 (36%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ +F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDANEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + + I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y + Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKG 446 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 447 TIDKYSYSATLQEIAENDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 506 NAYLKELGVLKD 517 >gi|254520681|ref|ZP_05132737.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA] gi|226914430|gb|EEH99631.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA] Length = 518 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 101/558 (18%), Positives = 208/558 (37%), Gaps = 77/558 (13%) Query: 1 MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 M E + SL +W A L G + ++F IL R L +E Sbjct: 1 MEEDMNTEEKQREQQGSLQTKLWDIANTLRGSMEASEFKNYILGLIFYRYLSENVEERAL 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGY------SFYNTSEYSLSTLG-----STNTRNNLES 102 + E+ + E + + ++ +Y L LE Sbjct: 61 KLLEEDNVTYEKAWEDEEYREALQEELVNDIGYFIEPKYLFRVLLRGIETGDFDIETLEE 120 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTV 150 I +++ + DF ++ ++ ++ K+ + + I Sbjct: 121 AINDITESTLGHESEEDFDHLFDDMDLKSTKLGKDVKSRSEIIGKVMGSIASIPFKFGDS 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++ + YE+LI +F + + A +F TP+ V + ++ L + +Y Sbjct: 181 EIDILGDAYEYLIGQFAANAGKKAGEFYTPQQVSRILAKIVTMDKKDL--------KNVY 232 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L K + +GQE T+ + M++ + Sbjct: 233 DPTCGSGSLLLRVS----------KEANVRTFYGQEKVSTTYNLARMNMILHGV-----S 277 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GL 328 NI+ TL +F ++NPP+ W D ++ E RF L Sbjct: 278 YKDFNIKNDDTLENPQHKDMKFEAIVANPPYSANWSAKADFLDDE-------RFSAYGKL 330 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387 S F+ H+ +L + G A+VL LF G A E IR++L+E +++ Sbjct: 331 APKSKADFAFIQHMIYQL----DDNGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNVL 383 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 +A++ LP ++FF T+I T + + N + + + + I+A++ + GK + ++ D+ Sbjct: 384 DAVIGLPANIFFGTSIPTVILVFKNNR--KDKENILFIDASNDFEK----GKNQNLLRDE 437 Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +I++ +RE K+S + + + P + ++ + + + Sbjct: 438 DVEKIINTIRNREAIDKYSYVANIEEIKDNDYNLNIPRYVDTFEEEEEIDIKAVQESIKN 497 Query: 507 LSPLHQSFWLDILKPMMQ 524 + + + + + + Sbjct: 498 RDKTLEELYKKLEEDLKE 515 >gi|312872245|ref|ZP_07732318.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1] gi|311092329|gb|EFQ50700.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1] Length = 398 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 89/439 (20%), Positives = 170/439 (38%), Gaps = 49/439 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT T + +W A LWG ++ +VI+ LR + A + + + Sbjct: 1 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + + F+ E T+ +N I S + K Sbjct: 59 ---GDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIESENKTLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + S + + +L + F+ I++ + ++ YE+ I +F + + Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V ++L P +YD CG+GG + + Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + +GQE +T + M IR +++D + T + DL + Sbjct: 222 NCG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPF + K + R+ G P + + ++ H+ + L Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ +VL++ L + GE EIR+ ++E+DLIE I++LP LF+ I LW +S Sbjct: 322 NGKIGLVLANGALSSQSC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVQIPVTLWFISQ 379 Query: 413 RKTEERRGKVQLINATDLW 431 K ++ + + ++ D W Sbjct: 380 NKNKKEKQSLLMLAKWDTW 398 >gi|310765245|gb|ADP10195.1| Type I restriction modification DNA modification domain protein [Erwinia sp. Ejp617] Length = 568 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 101/529 (19%), Positives = 176/529 (33%), Gaps = 105/529 (19%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55 M L + WK A+ L + ++ V+L L+ + A E + + Sbjct: 1 MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQKELTKLF 60 Query: 56 -------------REKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTN-- 95 RE+Y + ++ ++V Y F+ TL S Sbjct: 61 REVGNADNSYAIPREEYDSEAAYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAAL 120 Query: 96 ----------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133 +N I +D K I +L Sbjct: 121 PVGSVLGLDAKGKEVTLRSVSLLIDNALDKIEQSNDKLKGIINRIAHYQLG-----NEVL 175 Query: 134 YKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + FS ++ ++YE+ + +F + + TP+ +V Sbjct: 176 IGLINTFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVT 235 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPIL 240 L +L +YDP G+GGF + + + + Sbjct: 236 LIVEMLQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKI 284 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 V +GQE P T + M IR ++ + + TL D R + ++NPP Sbjct: 285 VVYGQESNPTTWRLAAMNMAIRGIDFEFGT------KNADTLLDDQHPDLRADFVMANPP 338 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F K K R+ G P + + ++ H+ + L G A++L Sbjct: 339 FNMKEW-------WNAKLENDVRWQYGTPPQGNANFAWMQHMIHHLAPK----GAMALLL 387 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415 + + E EIRR L+E DL+E +VALP LF T I +W+L+ K+ Sbjct: 388 --ANGSMSSNSNNEGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKDKSGGNGK 445 Query: 416 EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 R+G+V I+A + R R + +I D + + + K Sbjct: 446 AHRKGEVLFIDARQTGFMKDRVL----RDFTTEDIAKIADTFHAWQTDK 490 >gi|291167073|gb|EFE29119.1| type I restriction-modification system, M subunit [Filifactor alocis ATCC 35896] Length = 510 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 102/532 (19%), Positives = 192/532 (36%), Gaps = 64/532 (12%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 IW A LWG ++ KVI+ LR + A E + ++ G + + Sbjct: 12 EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKE-----GDGFENDR 66 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----- 126 F+ E S + S + + I + E+ + + + Sbjct: 67 DAYAEENIFFVPKEARWSKISSAAHTPEIGTVIDDAMRAIEK--ENITLKNVLPKNYASP 124 Query: 127 LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L ++ F + +++ ++ YE+ I +F + +F TP +V Sbjct: 125 DLDKRVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVK 184 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 A+L P +YDP CG+GG + V + + +GQ Sbjct: 185 TIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---NISVYGQ 231 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E +T + M IR ++++ T D+ + + ++NPPF Sbjct: 232 ESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKSDFIMANPPFNLSN 285 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 K E R+ G P + + ++ H+ + L G+ +VL++ L Sbjct: 286 WGAD-------KLKEDVRWKYGTPPSGNANYAWIQHMIHHL----AANGKIGLVLANGAL 334 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 SGE EIR+ ++E+DL+E IVALPT LF+ I LW ++ K +++GK I Sbjct: 335 --SSQSSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTLFI 390 Query: 426 NATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +A + + K R + + + +NG + G+ Sbjct: 391 DARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNG-----VLEEKKGFSA 442 Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 I + + +IL +E + + L M ++ + Sbjct: 443 IASIEDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSDMFKKSHE 494 >gi|291277029|ref|YP_003516801.1| type I restriction-modification system M protein [Helicobacter mustelae 12198] gi|290964223|emb|CBG40072.1| type I restriction-modification system M protein [Helicobacter mustelae 12198] Length = 542 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 119/533 (22%), Positives = 198/533 (37%), Gaps = 77/533 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREKYLAFGG 64 + L N IWK A +L G DF + +L R + L R + Y Sbjct: 36 QSELHNTIWKVANELRGSVDGWDFKQYVLGMIFYRYISENLANYINAREGKPKFYEDLSD 95 Query: 65 S--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------------SFSD 109 E +K G+ F S + + + NL + + D Sbjct: 96 EIAETVREDLIKAKGF-FIPPSALFCNVVKNAPNDENLNTTLGNIFKNIEKSSIGTGSED 154 Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163 N K +F D D +S +L EK L K+ + ++L V + YE+L+ Sbjct: 155 NVKGLFADLDVNS--NKLGNSVDEKNKKLIKLLCAINSMQLGEIKQSGIDVFGDAYEYLM 212 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S + +F TP++V L + L +++ K +YDP CG+G L Sbjct: 213 AMYASNAGKSGGEFFTPQEVSQLLAKIALHGQESVNK--------VYDPCCGSGSLLLQC 264 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + K + +GQE+ T+ +C M + ++ NI G TL+ Sbjct: 265 AKVI------GKENVLKGFYGQEINLTTYNLCRINMFLHDID-----YHKFNIAHGDTLT 313 Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340 + F +SNPP+ KW D D RF L + F M Sbjct: 314 DPKHRDDEPFDAIVSNPPYSTKWVGDDDPT-----LMGDERFRAAGKLAPKGSADLAFTM 368 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H+ + L G AIV L+ A E IR +L+ +D ++ ++ LP++LFF Sbjct: 369 HMLHSLSNS----GTCAIVEFPGVLYRSGA---EKTIREYLINHDYVDCVIQLPSNLFFG 421 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+IAT + +L K + K I+A+ + GKK + + R +IL ++ RE Sbjct: 422 TSIATAILVLKKNKRD---DKTLFIDASAEFV---KSGKK-NKLTEQNREKILQTWIQRE 474 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 L + + + + L + + L+Q Sbjct: 475 ELPHFSTL---------VSMEKIKDNDYNLSVNRYIETQEQKEEIDIQALNQE 518 >gi|228994625|ref|ZP_04154449.1| Type I restriction-modification system, M subunit [Bacillus pseudomycoides DSM 12442] gi|228765110|gb|EEM13840.1| Type I restriction-modification system, M subunit [Bacillus pseudomycoides DSM 12442] Length = 517 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 109/557 (19%), Positives = 195/557 (35%), Gaps = 77/557 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVRE 57 A L +W A DL G +F IL R L L + E Sbjct: 9 QQQAELHKKLWAMANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFVE 68 Query: 58 KYLAFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNA 111 + E + GY Y S + N ++E + Sbjct: 69 AWENDEYREDLQEYLINELGYVITPQYLFSTFVKEIELGANGNFDIEMLQNGVKFIESST 128 Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 DF + ++ ++ L+ K+ N + I D V V+ + Y Sbjct: 129 MGADSQEDFENLFDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAY 188 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E++I +F + + A +F TP+ V + ++ I+ +YD TCG+G Sbjct: 189 EYMISQFAANAGKKAGEFYTPQQVSRILAKIVTAGKTE--------IKDVYDGTCGSGSL 240 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + +GQE T+ + ML+ + +I+ Sbjct: 241 LLRVGKEAK----------VYNYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNA 285 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 TL + KRF ++NPP+ KW D + E + L S F+ Sbjct: 286 DTLEEPQHLDKRFEAIVANPPYSAKWSADDKFQDDERFSNY-----AKLAPKSKADFAFV 340 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLF 398 H + L + G A+VL LF G A E IR++L+E + ++A++ LP ++F Sbjct: 341 QHFIHHL----DDNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPGNIF 393 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + + +K + V I+A++ + GK + ++DDQ +I+D Y+S Sbjct: 394 FGTSIPTCILVF--KKCRKHDDNVIFIDASNEFEK----GKNQNHLSDDQVEKIVDTYLS 447 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 RE + + + L+ + L+ + + Sbjct: 448 RE---------TIDKYAYAATLDKIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLQAID 498 Query: 519 LKPMMQQIYPYGWAESF 535 + + + Sbjct: 499 EEIAKVDEELAAYFKEL 515 >gi|291530635|emb|CBK96220.1| type I restriction system adenine methylase (hsdM) [Eubacterium siraeum 70/3] Length = 534 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 116/560 (20%), Positives = 209/560 (37%), Gaps = 69/560 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------- 56 A L+N +W A DL G + F IL R L E + Sbjct: 10 QQAQELSNKLWAIANDLRGTMDASKFKDYILGIIFYRFLSEKTEKYMEEILKNDGITYAD 69 Query: 57 -------EKYLAFGGSNIDLESFVKVAGYSF----------YNTSEYSLSTLGSTNTRNN 99 E A ++D ++ YSF Y+ +S+ L + Sbjct: 70 ALASNDEELLAALDKYSLDNLGYIIRPEYSFGYIVNMIANKYDGKVFSVDYL-EKAIASI 128 Query: 100 LESYIASFSDNAKA-IFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 +S + S+ A IF+ D ++ + K+ + IE D V+ Sbjct: 129 QQSTLGQKSEAAFDGIFDAMDLKDKDLGKEVSDRTKQIAKVINRVNDIEFSYDDAQFDVL 188 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 Y LI F S+ + +F TP V L + L + ++ + DPTCG Sbjct: 189 GTAYMILIGLFASDSGKKGGEFFTPSAVSELCSKLATVGLKS--------VKNVCDPTCG 240 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + L + V G + + +GQEL T+ + ML+ + N Sbjct: 241 SASMLLEVRKAVIANGGTDE-HAVGHYYGQELNGTTYNLARMNMLMHDV-----PYQYFN 294 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333 + +TL KD F +F ++NPP+ KW ++ RF G G L S Sbjct: 295 LFNDNTLEKDNFGATKFTVQVANPPYSAKWSASSSFLD-------DPRFSGAGKLAPSSK 347 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVA 392 F+ H+ ++ GR A++L LF E IRR+L+++ ++++A++ Sbjct: 348 ADFAFVEHMVYHMDDD----GRIAVLLPHGVLFRSG---SEDTIRRYLIKDLNVLDAVIG 400 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LF T I +L + G + I+A+ +T GK ++ + +I Sbjct: 401 LPANLFHGTGIPVCCLVLRKYRNGN-AGNICFIDASKYYTP----GKNMNQLSAEDIDRI 455 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 ++ YV R++ KF + + + P R ++ ++A + K Sbjct: 456 VNAYVERKDIDKFCHVAEMSEIEENDFNLNIP-RYVDTFEEEPEIDIKAVMAEIKELESQ 514 Query: 512 QSFWLDILKPMMQQIYPYGW 531 ++ D + ++++ Sbjct: 515 RASLDDEINKYLKELGILED 534 >gi|322372660|ref|ZP_08047196.1| type I restriction-modification system, M subunit [Streptococcus sp. C150] gi|321277702|gb|EFX54771.1| type I restriction-modification system, M subunit [Streptococcus sp. C150] Length = 534 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 113/493 (22%), Positives = 189/493 (38%), Gaps = 72/493 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49 M+E T ++ SL +W +A+ L D+ +L + L + Sbjct: 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60 Query: 50 PTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105 + Y + E + S+ + + L + LE Sbjct: 61 ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPNLTFTALVERVNDGSFQLEDLAQ 120 Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F SD +FED D S +L ++ + + K + +++ + Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F ++ + A +F TP+ V L T + + T+YD T Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTIYDATM 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + P +V GQEL T+ + M++ + + + Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 + TL +D F L NPP+ KW ++ RF P L Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E IR+ LLE I+ + Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++FF T+I T + IL +T V I+A+ + GK + I+ D Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438 Query: 451 QILDIYVSRENGK 463 +IL+ Y SRE+ Sbjct: 439 KILNAYKSREDMD 451 >gi|282906211|ref|ZP_06314066.1| type I restriction-modification system M subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282331503|gb|EFB61017.1| type I restriction-modification system M subunit [Staphylococcus aureus subsp. aureus Btn1260] Length = 579 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + V++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F G F ++NPP+ KW D E +G L S F+ H Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400 + + L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 453 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Y ++ Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 507 Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K+S + + P R ++ L+ K + + Sbjct: 508 TIDKYSYSATLQEIDDNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566 Query: 520 KPMMQQIYPYGW 531 ++++ Sbjct: 567 NAYLKELGVLKD 578 >gi|312863190|ref|ZP_07723428.1| type I restriction-modification system, M subunit [Streptococcus vestibularis F0396] gi|311100726|gb|EFQ58931.1| type I restriction-modification system, M subunit [Streptococcus vestibularis F0396] Length = 534 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 117/495 (23%), Positives = 190/495 (38%), Gaps = 76/495 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------ 48 M+E T ++ SL +W +A+ L D+ +L + L + Sbjct: 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60 Query: 49 --EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS--TNTRNNLESY 103 AV KY + + + Y + + L + LE Sbjct: 61 ESLEEALAVYRKY--YEDEETHEDLLSVITDEMSYAIHPDLTFTALVERVNDGSFQLEDL 118 Query: 104 IASF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 F SD +FED D S +L ++ + + K + +++ Sbjct: 119 AQGFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAG 174 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ + YE+LI +F ++ + A +F TP+ V L T + + TLYD Sbjct: 175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDA 228 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 T G+G L +A + + P +V GQEL T+ + M++ + + + Sbjct: 229 TMGSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF-- 279 Query: 273 SKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GL 328 + TL +D F L NPP+ KW ++ RF P L Sbjct: 280 ---LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKL 329 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S FL+H L+ G AIVL LF G A E IR+ LLE I+ Sbjct: 330 APKSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAID 383 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 ++ LP ++FF T+I T + IL +T V I+A+ + GK + I+ D Sbjct: 384 TVIGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAH 436 Query: 449 RRQILDIYVSRENGK 463 +ILD Y SRE+ Sbjct: 437 IEKILDAYKSREDMD 451 >gi|315651209|ref|ZP_07904239.1| type I restriction-modification system DNA-methyltransferase [Eubacterium saburreum DSM 3986] gi|315486505|gb|EFU76857.1| type I restriction-modification system DNA-methyltransferase [Eubacterium saburreum DSM 3986] Length = 510 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 101/532 (18%), Positives = 194/532 (36%), Gaps = 64/532 (12%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 IW A LWG ++ KVI+ LR + A E + E+ G + + Sbjct: 12 EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLEE-----GDGFEDDR 66 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----- 126 F+ E S + S+ + I + + E+ + + + Sbjct: 67 DAYAEENIFFVPEEARWSKIASSAHTAEIGIVIDNAMREIEK--ENVSLKNVLPKNYAGP 124 Query: 127 LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L ++ F + +++ ++ YE+ I +F + +F TP +V Sbjct: 125 DLDKRVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVK 184 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 A+L P +YDP CG+GG + V + + +GQ Sbjct: 185 TIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---SISVYGQ 231 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 E +T + M IR ++++ T D+ + + ++NPPF Sbjct: 232 ESNADTWKMAKMNMAIRGIDANFGP------YHADTFFNDIHKTLKSDFIMANPPFNLSN 285 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 K + R+ G+P + + ++ H+ + L G+ +VL++ L Sbjct: 286 WGAD-------KLKDDVRWKYGMPPAGNANYAWIQHMIHHLAP----NGKIGLVLANGAL 334 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 SGE EIR+ ++E+DL+E IVALPT LF+ I LW ++ K +++G+ I Sbjct: 335 --SSQTSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGRTLFI 390 Query: 426 NATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 +A + + K R + + + +NG + G+ Sbjct: 391 DARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNG-----VLKERKGFSA 442 Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 I + + +IL +E + + L M ++ + Sbjct: 443 IATIKDIAKHDYILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSDMFKKSHE 494 >gi|315158691|gb|EFU02708.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0312] Length = 531 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 102/544 (18%), Positives = 209/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLYSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK- 112 + + Y S L + + + + + Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFVQL 122 Query: 113 --------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 +F+D D S ++ + ++ K + +++ V+ + YE Sbjct: 123 SSTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ NI+ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NIRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|254374065|ref|ZP_04989547.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548] gi|151571785|gb|EDN37439.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548] Length = 538 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 97/579 (16%), Positives = 215/579 (37%), Gaps = 79/579 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + S+ +W +A L G + +++ ++L L+ + E R + + Sbjct: 4 AKKKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLITE--- 60 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114 + ID+ F FY E + + ++++ S I + + K Sbjct: 61 GKEAFIDMVEFY-TMENVFYLPEESRWTYIKQNAKQDDIALKIDTALSTIEKNNPSLKGA 119 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 D FS + K L + + I D + ++ +YE+ + +F +G Sbjct: 120 LPDNYFSRLGLDVSK---LSSLIDTINNINTIADKG-NDIVGRVYEYFLSKFAIAEGKGK 175 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ +V+L ++ +YDP CG+GG ++ + + Sbjct: 176 GEFYTPKSIVNLIANMI-----------EPYKGKIYDPACGSGGMFVQSIKFIEAHKGN- 223 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + +GQE T+ + + IR + ++ + T KD + + Sbjct: 224 --KKDISIYGQEYTGTTYKLAKMNLAIRGISANLGDVPA------DTFFKDQHPDLKADF 275 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + ++ + R+ G +P S+ + +++++ +KL + Sbjct: 276 IMANPPFN------QKDWRGANELLDDPRWAGYDVPPKSNANYGWILNIVSKL----SQN 325 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G A +L++ L G E +IR+ L+ENDL+EAIV LP ++F+ T+I+ +WIL+ Sbjct: 326 GVAGFILANGALSGGGE---EYKIRKKLIENDLVEAIVILPRNMFYTTDISVTIWILNAN 382 Query: 414 KTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 K + +R ++ ++ K +++ ++I D Y + + Sbjct: 383 KKQREFEQNGKQKSHRDRSNEILFMDLRQKGVPFEK---KFIQFDEENIQEISDTYHAWQ 439 Query: 461 NGK-------FSRMLDYRTFGYRR-------IKVLRPLRMSFILDKTGLARLEADITWRK 506 + S Y+ + + + L + Sbjct: 440 SVGKTTPSCSASHPFKEGELVYKDIPEYCKSVTLEEIRAKDYSLVPSKYIEFVNRDENID 499 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 ++ ++ + + Q+ + KE + Sbjct: 500 FDEKMKNLQVEFSELLKQEEQSKQELLTVFKELGYEIKL 538 >gi|220934949|ref|YP_002513848.1| type I restriction-modification system specificity subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219996259|gb|ACL72861.1| type I restriction-modification system specificity subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 799 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 113/578 (19%), Positives = 208/578 (35%), Gaps = 81/578 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W ++L G + + +L ++ + Sbjct: 1 MALKKSELYSSLWSGCDELRGGMDASQYKDYVLVLLFIKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122 + G SF ++ L + + + I + NA + E DF+ Sbjct: 45 YAGQPYAPITIPPGASFK-----DMAALKGKPDIGDQINKKIIAPLANANQLSEMPDFND 99 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 +L L + F L D ++ + YE+L+R F +E + Sbjct: 100 P-NKLGSGKEMVDRLTNLIAIFEDKRLDFSKNRADGDDILGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + +L + S T+YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRVMAQIL-----GIRNASTSADTTVYDPTCGSGSLLLKVAD---------E 204 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291 + +GQE + T + M++ + + I QG+TL+ F K Sbjct: 205 AGTDVTLYGQEKDAATSGLARMNMILHN-------NPTALIMQGNTLADPKFLDGQSLKT 257 Query: 292 FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELP 349 F Y ++NPPF K+W D H+ RF G+P G +L+H+ L+ Sbjct: 258 FDYVVANPPFSDKRWSTGLDPASDPHE-----RFKHYGIPPDKQGDYAYLLHILRSLKST 312 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GR A +L LF G A E++IRR L+ I+ I+ LP +LF+ T I + + Sbjct: 313 ----GRGACILPHGVLFRGNA---EADIRRNLVRKGYIKGIIGLPPNLFYGTGIPACIVV 365 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468 + R + +I+A+ + +G K R + +I+D++ + ++R + Sbjct: 366 VDKA-EAHGRDGIFMIDASGGFM---KDGPKNR-LRSQDIHKIVDVFTKQAELPGYARRV 420 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + P + + + QS+W D+ + Q + Sbjct: 421 PLAEIEKNDYNLNLPRYIDSQQAEDRQDIEGHLRGGIPEADVDALQSYW-DVCPGLRQAL 479 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 + K++ T+ AFI+A Sbjct: 480 FRPNRPGYLDLAVDKADIRATI---YGHPEFTAFIDAM 514 >gi|300866159|ref|ZP_07110878.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506] gi|300335838|emb|CBN56038.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506] Length = 527 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 111/547 (20%), Positives = 203/547 (37%), Gaps = 62/547 (11%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EKYLAFGGS 65 +W A+ L G ++ ++L L+ + E + + L G Sbjct: 23 KLWAAADKLRGQMDSAEYKHIVLGLIFLKSISDQFEERYDQLEIWGLDSSSQFSLPDGND 82 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSST 123 E + F S L S N+ + I A + E + SS Sbjct: 83 KFTEEQDCGLTDNRFEIPESVRWSNLKSQANLLNIGNLID----EAMMVIEKENSSLSSI 138 Query: 124 IARLE---KAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + L ++ + I+L ++ +YE+ + RF + +G +F T Sbjct: 139 LPKAYSSLDPRRLSELIAIINTIDLGEKNSSSKDILGRVYEYFLGRFANWEGKG-GEFYT 197 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P+ VV L + +YDP CG+GG + V G Sbjct: 198 PQSVVKLLVEMTQPYQG-----------KIYDPCCGSGGIFVQSEKFVLAAGGKAN---D 243 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 ++ +GQE T +C + IR +E++ + TL+ DL + + L+NP Sbjct: 244 ILIYGQESNQTTWRLCKMNLAIRGIEANIGECNA------DTLNSDLHPDLKADFILANP 297 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF + ++ + R+ G+P S+ + ++ H+ L G A V Sbjct: 298 PFNMSDWEG-------YRLHQDQRWHYGIPPASNANFAWIQHIIYHLSDR----GIAGFV 346 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--- 416 LS+ L +G E EIR ++E+DLI+ IVALP+ LF+ T IA LW ++ K + Sbjct: 347 LSNGSLNHG---QVEGEIRSKIIEDDLIDCIVALPSQLFYTTQIAASLWFIAKNKRDDKW 403 Query: 417 -ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 +R G+ I A + R I DD+ +I + Y + G+ Sbjct: 404 RDRAGESLFIYAANFGQMADRT---HRTIADDEIAKIANTYNLWRSRDRINEYKDIP-GF 459 Query: 476 RRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + + L + ++T + ++ + D+ + + A + Sbjct: 460 CKSATLEEIRYHKMSLVPGRYVGFDENLTKQWDITELRAEFTDVENRIAEIDRASNSALN 519 Query: 535 FVKESIK 541 +KE + Sbjct: 520 VLKELLY 526 >gi|300865423|ref|ZP_07110226.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506] gi|300336582|emb|CBN55376.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506] Length = 540 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 109/562 (19%), Positives = 199/562 (35%), Gaps = 92/562 (16%) Query: 1 MTE----FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------- 45 MT G L +W A+ L G +F L F + L Sbjct: 1 MTNGLNGQNGHKKKLETQLWNIADSLRGKMNADEFRDYCLGFIFYKYLSERQYIYANGVL 60 Query: 46 -----CALE--PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--- 95 LE + +E A +I + F + ++ +L + Sbjct: 61 AEDGIDFLEIDESSEEGQEYLEAIKEESIAELGYFLKPSELFSSLAKRALGNQADKDEIS 120 Query: 96 ----------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLE------------KAGLL 133 +L + + + + DF L+ K L+ Sbjct: 121 DEELEKSSIFILGDLTDVLNNIERSTMGKESEEDFDHLFEDLDLNSTKLGRTPKAKNALI 180 Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 KI + I+ V+ + YE+LI +F S + A +F TP+ V + ++ Sbjct: 181 AKILVHLDKIDFRLGDTESDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSKVLAKIVTT 240 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 + ++++YDPTCG+G L V G +GQE+ T+ Sbjct: 241 GKE--------RLKSVYDPTCGSGSLLLRVAREVESVGD---------FYGQEMNRTTYN 283 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 + M++ + + +++Q TL G RF ++NPPF +W +K Sbjct: 284 LARMNMILHGVH-----YRNFDLRQEDTLENPQHEGMRFEAVVANPPFSAQWSANKLFES 338 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 + + L +S F+ H+ + L + G A+VL LF G A Sbjct: 339 DDRFSQY-----GKLAPVSKADFAFVQHMLHHL----DENGIMAVVLPHGVLFRGGA--- 386 Query: 374 ESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 E IR++L+ E + ++A++ LP ++F+ T+I T + +L +K E V I+A+ + Sbjct: 387 EGHIRQYLIKERNWLDAVIGLPANIFYGTSIPTCILVL--KKCRESPEDVLFIDASAYFE 444 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 N + ++ +I+ Y R E K+S + P ++ Sbjct: 445 KATN----QNLLRAQDVDKIISTYRQRIEEDKYSYRAPLAEIEENNFNLNIP---RYVDT 497 Query: 492 KTGLARLEADITWRKLSPLHQS 513 ++ KL Q Sbjct: 498 FEEEEEIDLAAVAAKLRQCDQD 519 >gi|228478347|ref|ZP_04062955.1| type I restriction-modification system, M subunit [Streptococcus salivarius SK126] gi|228250026|gb|EEK09296.1| type I restriction-modification system, M subunit [Streptococcus salivarius SK126] Length = 534 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 114/493 (23%), Positives = 190/493 (38%), Gaps = 72/493 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49 M+E T ++ SL +W +A+ L D+ +L + L + Sbjct: 1 MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60 Query: 50 PTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105 + Y + E + S+ + + + L + LE Sbjct: 61 ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120 Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F SD +FED D S +L ++ + + K + +++ + Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F ++ + A +F TP+ V L T + + TLYD T Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + + P +V GQEL T+ + M++ + + + Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 + TL +D F L NPP+ KW ++ RF P L Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ G AIVL LF G A E IR+ LLE I+ + Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++FF T+I T + IL +T V I+A+ + GK + I+ D Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438 Query: 451 QILDIYVSRENGK 463 +IL+ Y SRE+ Sbjct: 439 KILNAYKSREDMD 451 >gi|262374615|ref|ZP_06067888.1| type I restriction-modification system, M subunit [Acinetobacter junii SH205] gi|262310405|gb|EEY91496.1| type I restriction-modification system, M subunit [Acinetobacter junii SH205] Length = 522 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 108/532 (20%), Positives = 204/532 (38%), Gaps = 82/532 (15%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------------LEPTRSAVRE 57 W A L G +F IL F + L L+ Sbjct: 14 WNIANTLRGTMGADEFRDYILGFIFFKYLSEKSVNFANELLDGEEVSFLELDENNPEHVP 73 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + I + F+ +E ++L + + S + Sbjct: 74 YIEEIKKNAIAEVGYALTPKQLFHTLAE---RGRQGEFILDDLTATLKSIEQSTLGTDSA 130 Query: 118 FDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 DF++ L ++ L+ K+ + I+ V+ + YE+LI Sbjct: 131 DDFANLFEDLDLNSTKLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYLIGE 190 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F S + A +F TP+ V L ++ D +R++YDPTCG+G L Sbjct: 191 FASGAGKKAGEFYTPQTVSTLLAKIVTQGKD--------RLRSVYDPTCGSGSLLLRVKR 242 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 V D + + +GQE+ T+ + M++ + +I+Q +TL++ Sbjct: 243 EVKD---------VDMIYGQEMNRTTYNLARMNMILHDVHF-----AKFDIKQENTLTRP 288 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLA 343 K+F ++NPPF W D ++ E RF L S M F+ H+ Sbjct: 289 QHLDKKFDAVVANPPFSANWSADPLFLQDE-------RFAAYGKLAPSSKADMAFVQHML 341 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402 +L + G A+VL LF G S E IR++L+E ++++AI+ LP ++F+ T+ Sbjct: 342 YQL----DDNGTMAVVLPHGVLFRG---SSEGVIRQYLIEQMNVVDAIIGLPANIFYGTS 394 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 I T + +L +K E+ + I+A++ + +N + + + +I+ + REN Sbjct: 395 IPTCILVL--KKNREQSSNILFIDASNEFEKQKN----QNKLLPEHLDKIVAAFGKRENI 448 Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + ++ + + + P ++ A ++ D ++L L Sbjct: 449 EKYAHVATLQEVKDNDYNLNIP---RYVDTFEAEAEIDLDEIAKQLQALEHD 497 >gi|240949256|ref|ZP_04753600.1| Type I restriction-modification system methyltransferase subunit [Actinobacillus minor NM305] gi|240296372|gb|EER47016.1| Type I restriction-modification system methyltransferase subunit [Actinobacillus minor NM305] Length = 561 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 100/570 (17%), Positives = 193/570 (33%), Gaps = 82/570 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65 L +WK A+ L ++ ++L L+ + + + ++++Y Sbjct: 27 LNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQDIIKQRYTDPTSDFY 86 Query: 66 ----------------NIDLESFVKVAGYSFYNTSEYSLSTLG---STNTRNNL--ESYI 104 E F+ + + N + + E Sbjct: 87 LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVVGANIGDKIWGEKTF 146 Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151 ++ F+ + I R+ +L + FS T+ Sbjct: 147 KGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVDESILLGLIDLFSNTNFIRPTLDGKPI 206 Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 207 SLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYKG 255 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGF + + + + GQE P T + M IR +E D Sbjct: 256 RIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEFD 312 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + + T S K+ + ++NPPF K + R+ G Sbjct: 313 FGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWHPSLAQDLRWQYG 359 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 +P S+ + +L H+ L GR A++L++ + + E EIR+ +L+ DL+ Sbjct: 360 IPPESNANFAWLQHMIYHLSP----NGRMALLLANGSMSSNTNN--EGEIRKNILKADLV 413 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ALP+ LF T I +WIL+ K +G+V I+A L R D Sbjct: 414 EAMIALPSQLFTNTQIPACIWILNKDKAR--KGEVLFIDARQLGYMKDRV---LRDFTAD 468 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506 ++ D Y S + + + F Y + + F+L E + Sbjct: 469 DIAKVADTYHSWQQS--ADYQNIPAFCYTA-SLDEIAQNDFVLTPGRYVGAAEQEDDGVP 525 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q + + Q ++ + Sbjct: 526 FAEKMQELTALLQQQFKQSAELEAKIKANL 555 >gi|256841217|ref|ZP_05546724.1| type I restriction-modification system, M subunit [Parabacteroides sp. D13] gi|256737060|gb|EEU50387.1| type I restriction-modification system, M subunit [Parabacteroides sp. D13] Length = 510 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 102/485 (21%), Positives = 187/485 (38%), Gaps = 62/485 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65 + L F+W A L G + + I P +R+ + V E + + G Sbjct: 16 TLDELKGFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112 ++ G + + N N L I + + Sbjct: 76 QVEDLPIRIPDGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF D + A++ ++ + ++FS L P M YE+L+ +F + Sbjct: 130 GIFGPKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A++F T R VV L +L P ++YDPTCG+GG L ++++ + G+ Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGA 238 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 + GQE+ T ++ + + +E +I TL F Sbjct: 239 E---WQSVQVFGQEVNGLTSSIAQMNLYLNGVE-------DFSIACADTLEHPAFLDGSH 288 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F L+NPP+ K ++ N + GR G P FL H+ + Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFLQHIIASMNE 343 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR AI+ LF E E+R+ L+E D+++ I+ L +LF+ + + + Sbjct: 344 TQ---GRCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACIL 396 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRM 467 I + K ++ +V +INA + T ++ + ++I++ Y +RE FSR+ Sbjct: 397 ICNCSKANSKKNRVLMINAVNEVTR----KNAESMLLAEHIQRIVNAYQQNRELDGFSRI 452 Query: 468 LDYRT 472 + Sbjct: 453 VSNDE 457 >gi|237729542|ref|ZP_04560023.1| N4/N6-methyltransferase [Citrobacter sp. 30_2] gi|226908148|gb|EEH94066.1| N4/N6-methyltransferase [Citrobacter sp. 30_2] Length = 515 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 93/547 (17%), Positives = 190/547 (34%), Gaps = 60/547 (10%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +WK A+ L + ++ V+L L+ + + E + + + Sbjct: 13 LEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYE-LLKASEGEFAGADPED 71 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSST 123 A F+ + L S ++ I + + K + Sbjct: 72 KDEYTAYNIFFVPELARWNYLISKARLPEIGKLVDDAMELIEAGNPQLKGVLPKVYARQN 131 Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + A +L ++ I L V+ +++E+ + F + F TP+ Sbjct: 132 L----DATVLGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKS 187 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V L +L ++DP CG+GG + V + + Sbjct: 188 IVSLLVNML-----------EPYKGRVFDPCCGSGGMFVQSEKFVEAHQGNI---DDISI 233 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T + + IR + S+ R S+ + D + + ++NPPF Sbjct: 234 YGQESNQTTWRLAKMNLAIRGINSEHVRWNSEG-----SFLNDAHKDLKSDFIIANPPFN 288 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + + R+ G+P + + ++ H L G+A +VL+ Sbjct: 289 VSDWSGE-------QLRGDARWQYGIPPTGNANFAWMQHFLYHLSPK----GQAGVVLAK 337 Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT-----E 416 L + SGE +IR L+++ ++I+ IV LP LF T I LW + + Sbjct: 338 GALTS--KSSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDRENSSQYR 395 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF-GY 475 +R ++ I+A +L I K +++DD + I D Y + N DY G+ Sbjct: 396 DRSKEILFIDARNLGHLINRRTK---VLSDDDIKTIADTYHNWRNKGG----DYEDVAGF 448 Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + + ++ ++L L + + + + ++ Sbjct: 449 CASVDINEVAKLDYVLTPGRYVGLTDEEDDFDFKERFTALKAEFEAQLKEEARLNNTIAE 508 Query: 535 FVKESIK 541 + + + Sbjct: 509 NLAKVVL 515 >gi|295135271|ref|YP_003585947.1| type I restriction-modification system methyltransferase subunit like protein [Zunongwangia profunda SM-A87] gi|294983286|gb|ADF53751.1| type I restriction-modification system methyltransferase subunit like protein [Zunongwangia profunda SM-A87] Length = 521 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 99/558 (17%), Positives = 204/558 (36%), Gaps = 71/558 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + T S+ +W A L G + +++ V+L L+ E R + + Sbjct: 4 KKTTKEKSIEESLWDAANKLRGSIEPSEYKHVVLGLIFLKFASDKFEVRREELIAE---G 60 Query: 63 GGSNIDLESFVKVAGYSFY-NTSEYSL--STLGSTNTRNNLESYIASF---SDNAKAIFE 116 ++++ F + F TS ++ + +++ + + + K Sbjct: 61 KEKYLEMKDFYNMKNVFFLAETSRWNYLIKNAKQDDIALKIDTALNQIEKNNPSLKGALP 120 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 D FS L+K+ L + + I+ D ++ +YE+ + +F +G + Sbjct: 121 DNYFSRLG--LDKSK-LSALLDTINKIDTQKDK-SQDIVGRVYEYFLSKFALAEGKGKGE 176 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ +V+L ++ +YDP CG+GG ++ + H Sbjct: 177 FYTPKSIVNLIAEMI-----------EPYKGIIYDPACGSGGMFVQSIKFIESH---HGS 222 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 + +GQE T+ + + IR + ++ + T S D + Y + Sbjct: 223 KREISIYGQEYTNTTYKLAKMNLAIRGISANLGDKAA------DTFSNDQHKDLKADYIM 276 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +NPPF + + + R+ G +P S+ + +++++ +KL G Sbjct: 277 ANPPFN------QKDWRGPQELIDDPRWQGYEVPPKSNANYGWILNMVSKLSDD----GV 326 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A +L++ L G E +IRR L+EN+L+EAI+ LP ++F+ TNI+ +WIL+ KT Sbjct: 327 AGFILANGALSGGGE---EYKIRRKLVENNLVEAIIILPQNMFYTTNISVTVWILNRNKT 383 Query: 416 EERR-------------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461 R +V ++ K + Q + I Y + Sbjct: 384 AHTRSIGDEERHYRDRHEEVLFMDLRQNGEPFEK---KFIQFSGTQIKDIARTYHDWQQE 440 Query: 462 -------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 ++ + ++ + F+ + + Sbjct: 441 DTNYKDIPEYCYSATKADIEKKDFSLVPSKYIEFVNRDENIDFDTKMAGLQTELTDLLQQ 500 Query: 515 WLDILKPMMQQIYPYGWA 532 D K ++ G+A Sbjct: 501 EEDSKKELLDVFKELGYA 518 >gi|297618846|ref|YP_003706951.1| type I restriction-modification system, M subunit [Methanococcus voltae A3] gi|297377823|gb|ADI35978.1| type I restriction-modification system, M subunit [Methanococcus voltae A3] Length = 514 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 119/554 (21%), Positives = 214/554 (38%), Gaps = 73/554 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T+ L +W A DL G+ +H +F IL R L LE S + ++ Sbjct: 5 TKQKEQKNQLNTKLWSIANDLRGNMEHNEFKNYILGVIFYRYLSEKLENRVSNLLKEDNI 64 Query: 62 FGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109 + E + + +Y EY ST+ + T L I S ++ Sbjct: 65 TYAEAWNDEEYTEELKEELLDEIGYYIAPEYLFSTMVNKITNTKDFTIEELSKAIGSINE 124 Query: 110 NA-----KAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + + FE+ D +L ++ L+ K+ + I+ + V+ + Sbjct: 125 STLGTKSQDAFENLFDDLDLESNKLGQKVEARSKLMAKVLSKIAEIDFSHEDSEIDVLGD 184 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI +F S + A +F TP+ V + ++ L +++YDPTCG+G Sbjct: 185 AYEFLISQFASSAGKKAGEFYTPQQVSKILAKIVTMGKKDL--------KSVYDPTCGSG 236 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L K + +GQE+ T+ + ML+ + D +IQ Sbjct: 237 SLLLRIS----------KEADVRKFYGQEVISTTYNLARMNMLLHNVSYDK-----FDIQ 281 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGS 335 L GK+F ++NPP+ + W + + RF + S Sbjct: 282 NDDVLENPKHLGKKFDAVVANPPYSQTW--------DNSMHNDDDRFSEYGKMAPNSKAD 333 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394 F+ H+ L G A+VL LF G A E IR++L+ E + ++A++ LP Sbjct: 334 FAFVQHMIYHLADK----GVMAVVLPHGVLFRGNA---EGTIRKYLIKEKNYLDAVIGLP 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +++FF T I T + + +K E V I+A++ + GK + I+ D+ +I+D Sbjct: 387 SNIFFGTGIPTTILVF--KKCRETGDNVLFIDASNDYEP----GKNQNILRDEDVEKIID 440 Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 Y R+ K+S + + P R ++ +E K Sbjct: 441 TYKERKAIDKYSAVATLDDIKENDYNLNIP-RYVDTFEEEEPVNMEKVKAEIKELKEQFL 499 Query: 514 FWLDILKPMMQQIY 527 + L+ ++ ++ Sbjct: 500 KQDEDLEKILNELE 513 >gi|170017258|ref|YP_001728177.1| Type I restriction-modification system, M subunit [Leuconostoc citreum KM20] gi|169804115|gb|ACA82733.1| Type I restriction-modification system, M subunit [Leuconostoc citreum KM20] Length = 531 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 108/544 (19%), Positives = 208/544 (38%), Gaps = 71/544 (13%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA--------- 61 L +W A+ L G +++ +L + L R ++ Sbjct: 5 LEQQLWAAADILRGKMDASEYKNYLLGLVFYKYLSD--SELREVYEQENGQTTDFPTRSI 62 Query: 62 --------FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSD--- 109 F + +L +++ F S+ + + NL A F++ Sbjct: 63 QYQTLMDWFEDDSEELAEIIQLQKGYFIKPSQLFYTYRQQADRYEFNLTDLQAGFNELER 122 Query: 110 ---NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 K +F D D +ST ++ + ++ + I+L V+ + YE+LI Sbjct: 123 QGDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLF--EHDGDVIGDAYEYLI 180 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 +F + + A +F TP+ V + + + + +YDPT G+G + + Sbjct: 181 GQFAAGAGKKAGEFYTPQAVSRIISEIAAIGQEDR------APFHIYDPTMGSGSLMLNI 234 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++++ P + HGQEL T+ + +++ ++ D N+ G TL Sbjct: 235 RRYLSN-------PKQVHYHGQELNTTTYNLARMNLILHGVDQDRM-----NLNNGDTLD 282 Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 D T + +F + NPP+ KW + + RFG L S FL+H Sbjct: 283 ADWPTEEPHQFDAVVMNPPYSAKWSAADKFLSDQR----FERFG-KLAPKSKADFAFLLH 337 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L+ G IVL LF G A E IR+ LLE I+A++ LP ++F+ T Sbjct: 338 GFYHLKDS----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFYGT 390 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + IL ++ V I+A+ + + + +++ ++I+ Y R + Sbjct: 391 SIPTTVIILKKNRSSR---DVLFIDASQDFDKQKT----QNVLSPKHIQKIVSAYKERTD 443 Query: 462 GK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 + +S + Y + P + D+ + ++ K+ D+L Sbjct: 444 TEKYSHVASYDEIKENDFNLNIPRYVDTFEDEAPVDLVKVSDEISKIDQELSEKQSDLLA 503 Query: 521 PMMQ 524 M + Sbjct: 504 MMNE 507 >gi|325832722|ref|ZP_08165485.1| type I restriction-modification system, M subunit [Eggerthella sp. HGA1] gi|325485861|gb|EGC88322.1| type I restriction-modification system, M subunit [Eggerthella sp. HGA1] Length = 524 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 114/559 (20%), Positives = 210/559 (37%), Gaps = 75/559 (13%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59 ++ A+ L+ +W A DL G+ T F IL L E + ++ Sbjct: 6 KYQAQASELSQKLWAIANDLRGNMDSTKFRNYILGTIFYSYLSERTEEYMQEILKEDGLT 65 Query: 60 --LAFGGSNIDLESFVKVAGYSFYNTSEYSL---------------------------ST 90 AF ++ + Y +L + Sbjct: 66 YEQAFSDADYRPIVEQWSIEHLGYIIKPENLFRELVRKIVRPEGDVDKFSVEDYERAVNE 125 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L + E+ ++ K +D D T+A E+ L+ K+ S I+ Sbjct: 126 LTGSTMGQASEAAFNGLFNDMK--LQDPDLGDTVA--ERTALISKVIVKISEIDFSLSDS 181 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ Y LI F S+ + + +F TP L L D +T+ Sbjct: 182 QFDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA--------KTVG 233 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 D TCG+ L + H+ + +GQE T+ + ML+ ++ Sbjct: 234 DCTCGSASMLLEVQKHLT-------TGRVGHFYGQENNATTYNLARMNMLMHGVD----- 281 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + +I +G TL +D + + + NPP+ K++ + ++ +G LP Sbjct: 282 YQNFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDANPALLDDPRYSG-----AGKLPP 336 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389 S F+ H+ ++ GR A++L LF G A E IR++++++ + ++A Sbjct: 337 KSHADYAFVEHMIYHMDDDD---GRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNRLDA 390 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ L +LF T+I L +L K G V I+A+ + GK + + D+ Sbjct: 391 VIGLAPNLFHGTSIPVCLLVL-KTKRNGNSGNVLFIDASKEF----KPGKNQNTLEDEHI 445 Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++I+D YV RE+ KF+ + D + P R ++ LEA K Sbjct: 446 QKIVDAYVKREDVDKFAHVADMAEIEANGWNLNIP-RYVDTFEEEKPVDLEAVRDDLKRI 504 Query: 509 PLHQSFWLDILKPMMQQIY 527 + +D + M++Q+ Sbjct: 505 ESEKKAAIDKAELMLRQLG 523 >gi|283796923|ref|ZP_06346076.1| type I restriction-modification system, M subunit [Clostridium sp. M62/1] gi|291075333|gb|EFE12697.1| type I restriction-modification system, M subunit [Clostridium sp. M62/1] Length = 522 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 120/567 (21%), Positives = 212/567 (37%), Gaps = 75/567 (13%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48 M + L N +W A L G+ + +F IL L Sbjct: 1 MDNSIQAHQKELCNKLWAMANALRGNMEAYEFKNYILGMIFYYYLSDRTEKYMANLLKDD 60 Query: 49 ----------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 E ++AV E+ L G I+ + + N S + + L + Sbjct: 61 GIGYEEAWADEEYKTAVIEEALRDLGYVIEPQYLFRKMVKMVENRS-FDIEFL-QSAINA 118 Query: 99 NLESYIASFS-DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 +ES I + S ++ +F D S ++L +++ ++ KI + I D Sbjct: 119 LMESTIGNDSQEDFDGLFSDMQLDS--SKLGHTVKDRSAVMAKIIASLDEINFGVDDTKI 176 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ N YE+LI +F + + A +F TP L L ++ DP Sbjct: 177 DVLGNAYEYLIGQFAATAGKKAGEFYTPSGPAELLCRLACLGLTD--------VKDAADP 228 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L N+ +GQEL T+ + M++R + Sbjct: 229 TCGSGSLLLRLKNYANVRN----------YYGQELTSTTYNLARMNMILRGV-----PYR 273 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + NI G TL D F +F ++NPP+ W D +E E N L S Sbjct: 274 NFNIYNGDTLEHDYFGDMKFRVQVANPPYSANWSADMHFMEDERFNEY-----GKLAPKS 328 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391 F+ H+ ++ GRA ++L LF G A E IR+ L++ ++++A++ Sbjct: 329 KADFAFVQHMVYHMDED----GRAVVLLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVI 381 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T I + +L + + I+A+ + + GK + I+ + + Sbjct: 382 GLPANLFFGTGIPVCVLVLKRERNGN-SDNILFIDASSDFEA----GKNQNILRECDIDK 436 Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I++ Y R++ K++ + + + P + + + E RKL Sbjct: 437 IVETYERRQDVDKYAHVATMQEIEENGFNLNIPRYVDTFEPEPEIDLNEVAAEIRKL-QS 495 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVK 537 LKP ++ + K Sbjct: 496 EIKDIDAELKPFFDELGLDFPFDVEGK 522 >gi|315127914|ref|YP_004069917.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913] gi|315016428|gb|ADT69766.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913] Length = 559 Score = 296 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 93/531 (17%), Positives = 174/531 (32%), Gaps = 100/531 (18%) Query: 1 MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT L +W A+ L + +L ++ + A + + + Sbjct: 1 MTNTEEQQFLTDLEKKLWNAADKLRSTLDAAQYKHAVLGLVFIKYVSDAFKIRQDELISA 60 Query: 59 YLA-FGGSNIDLESF--------------------VKVAGYSFYNTSEYSLSTLGSTN-- 95 + +D E F + +F+ ++ S L N Sbjct: 61 FNNPDSDYFLDPEDFGGKESAEYQEELAVELEQRDYYLETNTFWVPTQARWSFLQDNNKT 120 Query: 96 ----------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133 +N I + K + I +++ L Sbjct: 121 VIGGAELPIGNDKTIKITSVGHLIDNALDAIEVANPKLKGVLNKQYTRLQIDQVK----L 176 Query: 134 YKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 ++ + I H ++ ++YE+++ +F + F TP+ +V L ++ Sbjct: 177 AELIDLIATIPFVHASLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPKSIVSLMVQMM- 235 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 +YDP G+GGF + + + + +GQE T Sbjct: 236 ----------EPFKGRVYDPAMGSGGFFVQSEHFINAHKGKIG---DVSIYGQEYNHTTW 282 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M IR ++ + ++ + +T + D R + ++NPPF K Sbjct: 283 QLASMNMAIRGIDFNFGKEPA------NTYTNDQHPDLRADFVMANPPFNMKEW------ 330 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + + R+ G P + + +L H+ + G A + S N Sbjct: 331 -DVGVSDDDPRWAYGTPPSGNANFAWLQHMLYHTAPNGSVGLLLA---NGSMSSNTNN-- 384 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKV 422 E IR+ L+E DL+E +VALP LF T I +W L+ K +RRGKV Sbjct: 385 -EGAIRKALIEQDLVECMVALPGQLFTNTQIPACIWFLTKNKNARVSASGRQLTDRRGKV 443 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 I+A +L R Q+ + + + + S D F Sbjct: 444 LFIDARNLGYMKDRV---LRDFTQTDLDQVTATFHNWQ--QASDYQDTAGF 489 >gi|239637508|ref|ZP_04678481.1| type I restriction-modification system, M subunit [Staphylococcus warneri L37603] gi|239596903|gb|EEQ79427.1| type I restriction-modification system, M subunit [Staphylococcus warneri L37603] Length = 518 Score = 296 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 119/539 (22%), Positives = 203/539 (37%), Gaps = 81/539 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVRE 57 L +W A DL G+ ++F IL R L AL E Sbjct: 9 QQQQELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEAEVAEALSDEEITYEE 68 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI--- 114 + E ++ GY Y + S++ + I S + + Sbjct: 69 AWKDEEYREDLKEELIENVGY--YIEPQDLFSSMVKEIENQRFD--IEHLSQAIRKVETS 124 Query: 115 -------------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 F D D SST RL ++ L+ K+ + S + + ++ Sbjct: 125 TLGQDSEEDFVGLFSDMDLSST--RLGNTVKDRTALIGKVMVHLSELPFVHSDMEIDMLG 182 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE LI RF + + A +F TP+ V + ++ D +R +YDPTCG+ Sbjct: 183 DAYEFLIGRFAANAGKKAGEFYTPQQVSKILAKIVTQGKD--------KLRNVYDPTCGS 234 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L K + +GQE T+ + ML+ + R + +I Sbjct: 235 GSLLLRVG----------KETKVYRYNGQERNNTTYNLARMNMLLHDV-----RYENFDI 279 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 Q G TL F ++F ++NPP+ W D + E + L + Sbjct: 280 QNGDTLENPAFMDEKFDAVVANPPYSAHWSADSKFNDDERFSNY-----GKLAPVKKADY 334 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395 F+ H+ + L+ G A+VL LF +A E IRR+L+E + ++A++ LP Sbjct: 335 AFVQHMIHYLDDE----GTMAVVLPHGVLFRSQA---EGVIRRYLIEEKNYLDAVIGLPN 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T I+T + + +K E V I+A+ + GK + + DD +I+D Sbjct: 388 NLFFGTPISTCILVF--KKCREIDDNVLFIDASQSFEK----GKNQNHLTDDDVNKIVDT 441 Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 Y RE K+S + + P ++ ++ D + L + + Sbjct: 442 YSKRETIDKYSYVASLDDIKDNDYNLNIP---RYVDTFEEEESIDLDQVQQDLKDIDKE 497 >gi|198284106|ref|YP_002220427.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665706|ref|YP_002426761.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248627|gb|ACH84220.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517919|gb|ACK78505.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 537 Score = 296 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 122/572 (21%), Positives = 220/572 (38%), Gaps = 85/572 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MTE + L N +W A+ L G DF +L F LR L E + + Y Sbjct: 1 MTE--QNQKQLGNTLWSIADQLRGAMDADDFRDYMLSFLFLRYLSDNYETAAKKELGRDY 58 Query: 60 LAFGGSN-------------IDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRN 98 GG D+ +F K + S +L+ + + + Sbjct: 59 PDVGGDARKVPLALWYANNVDDIPAFEKQMRRKVHYVIQPAHLWNSIANLARTQNPDLLD 118 Query: 99 NLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 L++ YI SF + +F + D SS +L ++ L I + + L Sbjct: 119 TLQAGFKYIETESFESTFQGLFSEIDLSS--PKLGKSYSDRNAKLCTIIQKIAE-GLAAF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F + + A +F TP+ + + +A++ + + + Sbjct: 176 STNIDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLDS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + V G +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRKKVNQAGGSIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287 Query: 269 RRDLSKNIQQGSTLSK------DLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL + ++ F ++NPPF +WE + Sbjct: 288 --DTEFEIFHGDTLLNEWDMLREQNPARKPSFDAVVANPPFSYRWEPTDA-------LAD 338 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L+ G AI+L LF G A E IR Sbjct: 339 DVRFKSHGLAPKSAADFAFLLHGFHYLKDE----GVMAIILPHGVLFRGGA---EERIRT 391 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ ++ LP +LF+ T I + +L K V INA + + GK Sbjct: 392 KLLKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFVK----GK 444 Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-- 496 ++ ++D+ +I++ Y R E +++R +D + +S +D+ + Sbjct: 445 RQNHLSDEHIAKIIETYQFRTEEPRYARRVDMAEIEKNDFNLNISRYISTAVDEEEIDLT 504 Query: 497 -----RLEADITWRKLSPLHQSFWLDILKPMM 523 + + ++ + H F ++ P++ Sbjct: 505 ATHANLVNIEKAIQQATAKHNEFLKELGMPLL 536 >gi|182412907|ref|YP_001817973.1| type I restriction-modification system, M subunit [Opitutus terrae PB90-1] gi|177840121|gb|ACB74373.1| type I restriction-modification system, M subunit [Opitutus terrae PB90-1] Length = 547 Score = 296 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 114/567 (20%), Positives = 200/567 (35%), Gaps = 93/567 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT L +W A+ L G DF +L F LR L + + + Y Sbjct: 1 MTH--QDQQRLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYDVAAKKELGSDY 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLST---------LGSTNTRNNLE--------- 101 F + + + A + + N+ Sbjct: 59 PKFAADDPRVPLAIWYANNPGDVV---DFEKQMRRKVHYVIKPDHLWANIANLARSESDE 115 Query: 102 ---------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145 YI SF + +F + + S +L EK L I K + L Sbjct: 116 LLETLKAGFDYIENESFQSTFQGLFSEINLYS--EKLGRSQSEKNKKLCGIIKKIAD-GL 172 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 + + + YE+LI +F + + A +F TP+ + + + ++ Sbjct: 173 KEFSTDTDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISTILSRIVTLDSQEPKTGKVPH 232 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + +++D CG+G L + + G GQE T+ + ML+ ++ Sbjct: 233 LGSVFDFACGSGSLLLNVRKQMGAHGIG-------RIFGQEKNITTYNLARMNMLLHGVK 285 Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 D I G TL+ D +F ++NPPF +W E + + Sbjct: 286 -----DTEFEIYHGDTLTNDWDFLRETNPAKMPKFDAVVANPPFSLRW-------EPKDE 333 Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 GE RF G+ S FL+H + L+ G AI+L LF G A E Sbjct: 334 LGEDVRFKNHGIAPKSAADFAFLLHGFHYLKDQ----GVMAIILPHGVLFRGGA---EER 386 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR LL++ I+ ++ LP +LF+ T I + +L K V INA + + Sbjct: 387 IRTKLLKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFDK--- 440 Query: 437 EGKKRRIINDDQRRQILDIYVSR-ENGKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKT 493 GK++ ++ ++ +I+ Y R E ++S+ +D + + R +I Sbjct: 441 -GKRQNVLTEEHLEKIVATYQLRKEEARYSKRVAMDRIEAEGYNLNISR-----YISTAE 494 Query: 494 GLARLEADITWRKLSPLHQSFWLDILK 520 ++ T L + + K Sbjct: 495 QEEEIDLTATHTNLVEIEKRIQTAAQK 521 >gi|73661362|ref|YP_300143.1| type I restriction-modification system methyltransferase subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493877|dbj|BAE17198.1| putative type I restriction-modification system methyltransferase subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 518 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 117/553 (21%), Positives = 214/553 (38%), Gaps = 78/553 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------E 57 A L +W A DL G+ ++F IL R L E + E Sbjct: 9 QQQAELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAETEVAEALSGEDLTYEE 68 Query: 58 KYLAFGGSNIDLESFVKVAGY------------SFYNTSEYSLSTLGSTNTRNNLESYIA 105 + + ++ GY + + + L + + Sbjct: 69 AWEDEEYREDLKDELIENVGYYIEPQDLFSSMVTEIENQRFDIEHLVQAIRKVETSTLGQ 128 Query: 106 SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + ++ +F D D SST RL E+ L+ K+ N + + ++ + YE Sbjct: 129 NSEEDFIGLFSDMDLSST--RLGNTVKERTALISKVMVNLGDLPFVHSDMEIDMLGDAYE 186 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI RF + + A +F TP+ V + ++ D +R +YDPTCG+G L Sbjct: 187 FLIGRFAANAGKKAGEFYTPQQVSKILAQIVTLGKD--------KLRNVYDPTCGSGSLL 238 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 K + +GQE T+ + ML+ + + + +IQ Sbjct: 239 LRVG----------KETTVYRYNGQERNNTTYNLARMNMLLHDVRFE-----NFDIQNDD 283 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL F G++F ++NPP+ KW D + E + L S F+ Sbjct: 284 TLENPAFEGEKFDAVVANPPYSAKWSADSKFNDDERFSNY-----GKLAPKSKADFAFIQ 338 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399 H+ + L+ G A+VL LF G A E IR++L+E + ++A++ LP ++F+ Sbjct: 339 HMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFY 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + + +K E V I+A++ + GK + + D+Q +I+ Y +R Sbjct: 392 GTSIPTCVLVF--KKCREADQDVLFIDASNEFEK----GKNQNHLTDEQVEKIIATYKNR 445 Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 E K+S + + + P ++ ++ D + L+ + D Sbjct: 446 EAVDKYSYAANLKEIDENDYNLNIP---RYVDTFEEEEPVDLDKVQQDLNQID-----DE 497 Query: 519 LKPMMQQIYPYGW 531 + + ++I Y Sbjct: 498 IAQVEKEIDGYLK 510 >gi|167626409|ref|YP_001676909.1| type I restriction-modification system methyltransferase subunit-like protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596410|gb|ABZ86408.1| type I restriction-modification system methyltransferase subunit like protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 531 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 99/575 (17%), Positives = 217/575 (37%), Gaps = 74/575 (12%) Query: 1 MT--EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT + + S+ +W +A L G + +++ ++L L+ + E R + + Sbjct: 1 MTQAKNKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAE 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 + ID+ F FY E S + ++++ S I + + Sbjct: 61 ---GKEAFIDMVEFY-TMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSL 116 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K D FS + K L + + I D + ++ +YE+ + +F Sbjct: 117 KGALPDNYFSRLGLDVSK---LSSLIDTINNINTIADKG-NDIVGRVYEYFLSKFAIAEG 172 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +G +F TP+ +V+L ++ +YDP CG+GG ++ + Sbjct: 173 KGKGEFYTPKSIVNLIANMI-----------EPYKGKIYDPACGSGGMFVQSIKFIEAHK 221 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + +GQE T+ + + I + ++ + T KD + Sbjct: 222 GN---KKDISIYGQEYTGTTYKLAKMNLAICGISANLGDVPA------DTFFKDQHPDLK 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPP 350 + ++NPPF + ++ + R+ G +P S+ + +++++ +KL Sbjct: 273 ADFIMANPPFN------QKDWRGVNELLDDPRWAGYDVPPKSNANYGWILNIVSKL---- 322 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 + G A +L++ L G E +IR+ L+ENDL+EAI+ LP ++F+ TNI+ +WIL Sbjct: 323 SQNGVAGFILANGALSGGGE---EYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWIL 379 Query: 411 SNRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + K + +R ++ ++ K ++ ++I + Y Sbjct: 380 NANKKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEK---KFIQFDEKNIQEISNTYH 436 Query: 458 SRENGKFSRMLDYRTFGYRR-------IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 + ++ +D + GY+ + + + + L + Sbjct: 437 TWQSIGGHSKIDSESQGYKDIPEYCKSVTLDEVIAKDYSLVPSKYIEFVNRDENIDFDEK 496 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 ++ + + + Q+ KE + Sbjct: 497 MKNLQTEFRELLKQEEQSKKELLKVFKELGYEIKL 531 >gi|307824515|ref|ZP_07654740.1| type I restriction-modification system, M subunit [Methylobacter tundripaludum SV96] gi|307734499|gb|EFO05351.1| type I restriction-modification system, M subunit [Methylobacter tundripaludum SV96] Length = 818 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 102/505 (20%), Positives = 192/505 (38%), Gaps = 74/505 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W ++L G + + +L ++ + Sbjct: 1 MAIKKSELYSSLWSGCDELRGGMDASQYKDYVLVLLFIKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + + G SF + + + + I + NA + + DF+ Sbjct: 45 YAGVPYAPIIIPEGASFK-----DMVAFKGKPDIGDQINKKIIAPLANANKLSDMPDFND 99 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 ++L L + F L D ++ + YE+L+R F +E + Sbjct: 100 P-SKLGSGQEIVERLTNLIAIFENKALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ D T+YDP CG+G L + + Sbjct: 159 QFYTPAEVSRIMAQIIGIRDA-----CTTNDTTVYDPACGSGSLLLKVGD---------E 204 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 + +GQE + T + M++ + + I+QG+TL+ LFT K Sbjct: 205 AHAKVTLYGQEKDAATSGLARMNMILH-------DNPTALIKQGNTLANPLFTSDDGQLK 257 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELP 349 F Y ++NPPF K + + + N RF G P G +L+H+ L+ Sbjct: 258 TFDYVVANPPFSDK----RWSTGIDPLNDPHRRFHDFGTPPDKQGDYAYLLHIVRSLKST 313 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+ A +L LF G A E++IR+ L+ I+ I+ LP +LF+ T I + + Sbjct: 314 ----GKGACILPHGVLFRGNA---EADIRKNLIRKGYIKGIIGLPANLFYGTGIPACIIV 366 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468 + R+G + +I+A+ + +G K R + D +I+D++ R K+SRM+ Sbjct: 367 IDKENAHTRKG-IFMIDASSGYI---KDGNKNR-LRDMDIHRIVDVFNKRLEVAKYSRMV 421 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKT 493 + P + + Sbjct: 422 GVEEIEKNEFNLNIPRYIDSQQAED 446 >gi|332364614|gb|EGJ42383.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK1059] Length = 533 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 123/571 (21%), Positives = 214/571 (37%), Gaps = 73/571 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR- 52 E T ++ SL +W +A+ L D+ +L + L L E T Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKLLFFVAETMEEETES 61 Query: 53 -SAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 Y ++ E + ++ + + + L LE F Sbjct: 62 LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPDLTFTALVDRVNEGTFQLEDLAQGF 121 Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + + +FED D S +L + ++ + K + +++ ++ Sbjct: 122 RDIEQCDELYENLFEDIDLYSK--KLGATPQKANSVVGAVMKELAVLDV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P +V GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW ++ RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLQ-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDTHIEKI 439 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y SRE KF+ + Y + P + ++ E + Sbjct: 440 LEAYKSREEIDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAI 499 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 +S +L+ + Q A++ +K+ +K Sbjct: 500 ESQTASLLEMLNQLHGTTPEADAELKQFLKE 530 >gi|17227995|ref|NP_484543.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120] gi|17129844|dbj|BAB72457.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120] Length = 537 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 105/564 (18%), Positives = 201/564 (35%), Gaps = 89/564 (15%) Query: 1 MTE-FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------ 47 MT G L +W A+ L G +F L F + L Sbjct: 1 MTNGQNGQKKKLETQLWNIADSLRGKMNADEFRDYCLGFIFYKYLSERQHLYANEVLAED 60 Query: 48 ------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTRNN 99 ++ + +E A +I + F + +E +L T N + Sbjct: 61 GIDFINIDESSKEGQEYLEAIKEESIATLGYFLKPSELFSSLAERALGAKTASEENLADE 120 Query: 100 LESYIASFSDNAKAIFEDF-----------DFSSTIARLE------------KAGLLYKI 136 D+ + DF L+ K L+ KI Sbjct: 121 DFEASNFILDDLTQVLSSIERSTMGKESEEDFDHLFEDLDLTSTKLGRTPKAKNALIAKI 180 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + I+ + V+ + YE+LI +F S + A +F TP+ V + ++ Sbjct: 181 LVHLNKIDFRLEDTESDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSKVLAKIVTTGK- 239 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 ++++YDPTCG+G L V G +GQE+ T+ + Sbjct: 240 -------SRLKSVYDPTCGSGSLLLRVAREVESVGD---------FYGQEMNRTTYNLAR 283 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 M++ + + +++Q TL G RF ++NPPF +W +K + Sbjct: 284 MNMILHGVH-----YRNFDLRQEDTLENPQHEGMRFEAVVANPPFSAQWSANKLFESDDR 338 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + L S F+ H+ + L + G A+VL LF G A E Sbjct: 339 FSQY-----GKLAPASKADFAFVQHMIHHL----DDNGIMAVVLPHGVLFRGAA---EGH 386 Query: 377 IRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 IR++++ E + ++A++ LP ++F+ T+I T + + +K E + I+A+ + + Sbjct: 387 IRKYVIKERNWLDAVIGLPANIFYGTSIPTCILVF--KKCRENPDDILFIDASAYFEKAK 444 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 N + + D+ +I+ Y R + +S + P ++ Sbjct: 445 N----QNYLRDEDVEKIVSTYRQRIQSEKYSYRAPLTEIAENDFNLNIP---RYVDTFEE 497 Query: 495 LARLEADITWRKLSPLHQSFWLDI 518 ++ D R++ + + Sbjct: 498 EEEIDLDAVAREIREIDREMVETD 521 >gi|157159201|ref|YP_001463944.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A] gi|157081231|gb|ABV20939.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A] Length = 515 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 91/547 (16%), Positives = 191/547 (34%), Gaps = 60/547 (10%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 L +WK A+ L + ++ V+L L+ + + E + + + Sbjct: 13 LEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYE-LLKAGEGEFAGADPED 71 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSST 123 A F+ + L S ++ I + + K + Sbjct: 72 KDEYTAYNIFFVPELARWNYLISKAKLPEIGKLVDDAMELIEAGNPQLKGVLPKVYARQN 131 Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + A +L ++ I L V+ +++E+ + F + F TP+ Sbjct: 132 L----DATVLGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKS 187 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V L +L ++DP CG+GG + V + + Sbjct: 188 IVSLLVNML-----------EPYKGRVFDPCCGSGGMFVQSEKFVEAHQGNI---DDISI 233 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE T + + IR + S+ R ++ + D + + ++NPPF Sbjct: 234 YGQESNQTTWRLAKMNLAIRGINSEHVRWNNEG-----SFLNDAHKDLKSDFIIANPPFN 288 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + + R+ G+P + + ++ H L G+A +VL+ Sbjct: 289 VSDWSGE-------QLRGDARWQYGIPPAGNANFAWMQHFLYHLSPK----GQAGVVLAK 337 Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT-----E 416 L + SGE +IR L+++ ++I+ IV LP LF T I LW + + Sbjct: 338 GALTS--KSSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDRENSSHYR 395 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF-GY 475 +R ++ I+A +L I K +++D+ + I D Y + N DY G+ Sbjct: 396 DRSKEILFIDARNLGHLINRRSK---VLSDEDIKTIADTYHNWRNKGG----DYEDVAGF 448 Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + + ++ ++L L + + + + ++ + Sbjct: 449 CASVDINEVAKLDYVLTPGRYVGLADEEDDFDFKERFTALKAEFEAQLEEEAHLNKSIAE 508 Query: 535 FVKESIK 541 + + + Sbjct: 509 SLAKVVL 515 >gi|260913242|ref|ZP_05919724.1| type I restriction-modification system [Pasteurella dagmatis ATCC 43325] gi|260632829|gb|EEX50998.1| type I restriction-modification system [Pasteurella dagmatis ATCC 43325] Length = 537 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 113/504 (22%), Positives = 186/504 (36%), Gaps = 77/504 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT+ L +W A+ L G DF +L F LR L E K Sbjct: 1 MTQ--EQLNQLGKTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGKDY 58 Query: 61 AFGGSNIDLESFVKVAGYS----------------------FYNTSEYSLSTLGSTNTRN 98 + G + F S L+ + S N Sbjct: 59 PQLADDDRRTPLSVWYGENADFVADFEKQMRRKVHYVIKPEFLWGSVAELARIQSDQLLN 118 Query: 99 NLE---SYI--ASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPD 148 L+ YI SF +F + + +S +L K L +I K + + Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNS--EKLGKNYDKRNDRLVEIVKCIAE-GISEF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F S + A +F TP+ V + + ++ + + Sbjct: 176 STDSDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTVLSRIVTLDSQNPASGNKIKLDN 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + +A H +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRHQMAQNNGHIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D +I G +L D F ++NPPF +WE + + Sbjct: 288 --DTEFSIHHGDSLLNDWDILNETNPAKKLTFDAVIANPPFSYRWEPKE-------ELAN 338 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L + G AI+L LF A E +IR+ Sbjct: 339 DFRFKNYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRSGA---EEKIRK 391 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ I+ LP +LF+ T I + +L K + V INA D + GK Sbjct: 392 KLLKDGHIDTIIGLPANLFYSTGIPVCVLVLKKCKKD---DDVLFINAADDFEK----GK 444 Query: 440 KRRIINDDQRRQILDIYVSRENGK 463 ++ + D+ +I+D Y R+ + Sbjct: 445 RQNRLTDEHIDKIVDCYQFRKEEQ 468 >gi|89898854|ref|YP_521325.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] gi|89343591|gb|ABD67794.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] Length = 544 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 111/564 (19%), Positives = 191/564 (33%), Gaps = 83/564 (14%) Query: 1 MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M E +L +W A+ L +++ V+L L+ + A + R ++ + Sbjct: 1 MNDEEQQYLNNLDKQLWAAADRLRAAVNPSEYMHVVLGLVFLKYISDAFKERRLELQAAF 60 Query: 60 LAFGGS---NIDLESFVK---------VAGYSFYNTSEYSLSTLGSTN-----------T 96 D + + F+ + L Sbjct: 61 QDPANDYYLGTDADELIAQELEARDYYTETNVFWVPALARWDFLKDNAKVAIDTVLTVKN 120 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKA-------GLLYKICKNFSGIELHP 147 E E + + + L+K+ L + FS I + Sbjct: 121 GKTFEYKFKGIGRLLDDALEAVEKDNPKLKGVLDKSYARWRVDEALPGLIDEFSKIPFNH 180 Query: 148 DTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + ++ +IYE+ + F + +F TP+ +V + +L Sbjct: 181 GALKAKDILGHIYEYFLGEFSIAAGKRGGEFYTPKSIVSVIVEML-----------EPFE 229 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP CG+GGF + V + G L +GQE P T + M IR L+ Sbjct: 230 GRVYDPCCGSGGFFVQSERFVLEHGGKIG---QLSIYGQEFNPTTWRLASMNMAIRGLDF 286 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D ++ + ST ++ R + ++NPPF K K E + R+ Sbjct: 287 DFGKEPA------STYTRPQHPDLRADFIMANPPFNMKAWK-------EGVKDDDPRWKY 333 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 G+P + + ++ H+ + L G A ++ + S N E EIR+ L+E DL Sbjct: 334 GVPPDGNANFAWMQHMIHHLAPH---GSMALLLANGSMSSNTNN---EGEIRKALIEADL 387 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEE-----RRGKVQLINATDLWTSIRNEGKKR 441 +E +VALP LF T I +W L+ K E R G+V I+A L Sbjct: 388 VECMVALPGQLFTNTQIPACIWFLTRSKAERKAKRSRHGEVLFIDARQLGYMKDRV---L 444 Query: 442 RIINDDQRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 R + ++ D + + + F + G VL P R + Sbjct: 445 RDFKPEDLAKVADTFHAWQRGVGYADEAGFCKAATLADIGKADY-VLTPGRYVGAAAQEA 503 Query: 495 LARLEADITWRKLSPLHQSFWLDI 518 A D R + L F Sbjct: 504 DAEPFEDKMARLTAALGDQFKESA 527 >gi|300113975|ref|YP_003760550.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii C-113] gi|299539912|gb|ADJ28229.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosococcus watsonii C-113] Length = 570 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 105/609 (17%), Positives = 195/609 (32%), Gaps = 115/609 (18%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M +L + +WK A+ L + ++ V+L L+ + A E + A+ E++ Sbjct: 1 MNNPEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEALLERF 60 Query: 60 LAFGGS--NIDLESFVKVAGY------------------SFYNTSEYSLSTLGSTNTR-- 97 + E F Y F+ STL Sbjct: 61 KDENDDIYYLPREDFDSDEDYQQALQEELEILDYYREANVFWVPKAARWSTLKEKAVLPV 120 Query: 98 ----------------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135 +N I + K I + L Sbjct: 121 GTVLWQDDTGHDVKLRSVSWLMDNALEAIEKSNAKLKGILNRISQYQL-----ENDKLLG 175 Query: 136 ICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + FS D ++ ++YE+ + +F + + TP+ +V L Sbjct: 176 LINTFSDTSFTKPMFDGEQLDLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLI 235 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVP 242 A+L +YDP G+GGF + + + H + + Sbjct: 236 VAML-----------EPYSGRVYDPAMGSGGFFVSSDKFIEEHAKEHHYDPSEQKKHISV 284 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE P T + M IR ++ + + + T D R + ++NPPF Sbjct: 285 YGQESNPTTWRLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFN 338 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + R+ G P + + ++ H+ + L G A ++ + Sbjct: 339 MK-------DWWSESLADDARWQYGTPPKGNANFAWMQHMIHHLAPT---GSMALLLANG 388 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS---------NR 413 S + G IR+ L+E DL+E + ALP LF T I +W L+ N Sbjct: 389 SMSSHTNNEGG---IRQRLVEEDLVECMAALPGQLFTNTQIPACIWFLTRDKANGLVRNE 445 Query: 414 KTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +RR + I+A +L + R R D +I D + + + G+ + Sbjct: 446 KKRDRREEFLFIDARNLGFMRDRVL----RDFTVDDIAKIADTFHAWQRGEHYEDVA--- 498 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + F+L + + +Q Sbjct: 499 -GFCKSASLDEIKKHDFVLTPGRYVGAREQ---EDDGEPFAEKMARLTGQLQEQFVESER 554 Query: 532 AESFVKESI 540 E+ +K ++ Sbjct: 555 LEAEIKRNL 563 >gi|327467251|gb|EGF12755.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK330] Length = 533 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 123/571 (21%), Positives = 213/571 (37%), Gaps = 73/571 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR- 52 E T ++ SL +W +A+ L D+ +L + L L E T Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVAETMEEETES 61 Query: 53 -SAVREKYLA-FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRN--NLESYIASF 107 Y + + + + + Y + + L LE F Sbjct: 62 LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPALTFTALVDRVNEGTFQLEDLAQGF 121 Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + + +FED D S +L ++ L+ + K + +++ ++ Sbjct: 122 RDIEQCDELYENLFEDIDLYSK--KLGATPQKQNQLVAAVMKELAVLDV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + TLYD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDE------QGFTLYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P + GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKYSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLH-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439 Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L Y SRE+ + F+ + Y + P + ++ E + Sbjct: 440 LKAYKSREDMEKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAI 499 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 +S + +L+ + Q A++ +K+ +K Sbjct: 500 ESQTVSLLEMLNQLHGTTPEADAELKQFLKE 530 >gi|85711747|ref|ZP_01042803.1| type I restriction-modification system methylation subunit [Idiomarina baltica OS145] gi|85694362|gb|EAQ32304.1| type I restriction-modification system methylation subunit [Idiomarina baltica OS145] Length = 571 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 99/610 (16%), Positives = 196/610 (32%), Gaps = 116/610 (19%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56 M L + +WK A+ L + ++ V+L L+ + A E + + Sbjct: 1 MDNTEQKFLKQLDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEQLLELF 60 Query: 57 -------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96 E+Y +++ + + A F+ STL Sbjct: 61 KTDDEDNLYYLPRDDFDSNEEYQEALTEELEVLDYYREA-NVFWVPKAARWSTLKEKAVL 119 Query: 97 -----------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133 +N I + K I + L Sbjct: 120 PIGSVLWKDDAGNDVKLRSVSWLIDNALEEIEKSNSKLKGILNRISQYQL-----ENEKL 174 Query: 134 YKICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + FS + ++ ++YE+ + +F + + TP+ +V Sbjct: 175 IGLINAFSDTSFTKPVLGGERLNLQSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVT 234 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPIL 240 L +L +YDP G+GGF + + + + + Sbjct: 235 LIVEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIEEHAKEQHYDASEQRKHI 283 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +GQE P T + M IR ++ + + + + D R + ++NPP Sbjct: 284 SVYGQESNPTTWRLAAMNMAIRGIDFNFGK------KNADSFLNDQHADLRADFVMANPP 337 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F K + R+ G P + + ++ H+ + L G I+L Sbjct: 338 FNIK-------DWWNESLADDVRWKYGTPPKGNANFAWVQHMLHHLAPT----GSMGILL 386 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415 ++ + + E EIR+ L+E DL+E +VALP LF T I +W L+ K Sbjct: 387 ANGSMSSNTNN--EGEIRKRLIEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGMVR 444 Query: 416 ----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 +RRG+ I+A +L R +D ++ D + + G+ + Sbjct: 445 NEKKRDRRGEFLFIDARELGYMKDRV---LRDFTNDDIAKVADTFHMWQQGESYEDIA-- 499 Query: 472 TFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ + + + + F+L + + + +Q Sbjct: 500 --GFCKSVNLDEIKKHDFVLTPGRYVGAKEQ---EDDGEPFNKKMARLTAQLSEQFAESE 554 Query: 531 WAESFVKESI 540 E+ +K ++ Sbjct: 555 RLEAEIKRNL 564 >gi|157151457|ref|YP_001449876.1| type I restriction-modification system, M subunit [Streptococcus gordonii str. Challis substr. CH1] gi|157076251|gb|ABV10934.1| type I restriction-modification system, M subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 535 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 125/571 (21%), Positives = 213/571 (37%), Gaps = 73/571 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR- 52 E T ++ SL +W +A+ L D+ +L + L L E T Sbjct: 4 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVAETMEEETES 63 Query: 53 -SAVREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 Y + E + ++ + + + L LE F Sbjct: 64 LDEALALYRTYYEDPDSQEDLITVITDELNYVIKPDLTFTALVDRVNEGTFQLEDLAQGF 123 Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + + +FED D S +L ++ L+ + K + +E+ ++ Sbjct: 124 RDIEQCDELYENLFEDIDLYSK--KLGATPQKQNQLVAAVMKELAVLEV--AGHAGDMLG 179 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + TLYD T G+ Sbjct: 180 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDE------QGFTLYDATMGS 233 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P + GQEL T+ + M++ + + + + Sbjct: 234 GSLLLNAKKYSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVENQF-----L 281 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 282 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN-------DPRFSPFGKLAPQS 334 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 335 KADFAFLLHGYYHLKQDK---GVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 388 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 389 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 441 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y SRE KF+ + Y + P + ++ E + + Sbjct: 442 LEAYKSREEMDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINETNKAI 501 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 +S +L+ + Q A++ +K+ +K Sbjct: 502 ESQTASLLEMLNQLHGTTPEADAELKQFLKE 532 >gi|315445330|ref|YP_004078209.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] gi|315263633|gb|ADU00375.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] Length = 810 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 103/481 (21%), Positives = 190/481 (39%), Gaps = 74/481 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK+ ++L G + + IL ++ + Sbjct: 1 MALKKSDLYTSLWKSCDELRGGMDASQYKDYILTLLFVKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 AG SF + L+ G + + IA+ ++ + + + DF+ Sbjct: 45 AKADPNSLIDVPAGGSF----DDMLAAKGDKEIGDRMNKIIAALAEANGLQKVIDLADFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAED 176 +L K L + F+ ++ D ++ + YE+L+R F +E + Sbjct: 101 DE-EKLGKGKEMQDRLSALVGIFNTLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V + ++ S +T+YDPTCG+G L + Sbjct: 160 FYTPAEVSRILAKVV------GISASTKQDQTVYDPTCGSGSLL---------LKVAAEA 204 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 P + +GQE + T A+ M++ E +I++G T++ FT + F Sbjct: 205 PRGITIYGQEKDNATWALSRMNMILHGNEV-------ADIRKGDTITSPQFTKNDQLRSF 257 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++NPPF K + + GRF G P +G FL+H+ L+ Sbjct: 258 DFAVANPPFSVKSWS-------NGLDKDYGRFEFGKPPEKNGDYAFLLHVLKSLKST--- 307 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ A++L LF G A E+ IR LL+ I I+ LP +LF+ T I + +L Sbjct: 308 -GKGAVILPHGVLFRGGA---EARIRTELLKRGYIRGIIGLPANLFYGTGIPACIVVLDK 363 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYR 471 R G V +++A+ + +G K R + +++D++ + +SRM+ Sbjct: 364 ENAAGRTG-VFMVDASKGFI---KDGNKNR-LRSQDIHKVVDVFNKQTEVDRYSRMVPLT 418 Query: 472 T 472 Sbjct: 419 E 419 >gi|330994842|ref|ZP_08318764.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp. SXCC-1] gi|329758103|gb|EGG74625.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp. SXCC-1] Length = 546 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 151/504 (29%), Positives = 226/504 (44%), Gaps = 86/504 (17%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 IW+ AE L G ++G VIL FT+LRRLE L R A + + Sbjct: 11 IWRIAELLRGVVPPGEYGPVILAFTVLRRLE--LARGRPV-----SALAAVASVADPLAR 63 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134 LE+ + + + + RL +AG+L Sbjct: 64 -------------------------LETLLGRLPAPVRGMMAQMEMGPLATRLARAGVLG 98 Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 ++ +F+ ++L P + M+ ++E L+R F + + TP ++ L T L+ P Sbjct: 99 RVAAHFAALDLSPALYGTQAMARLFEELVRHF--DAGQATGAHYTPPEIGDLMTDLVFAP 156 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 D A G LYDP GTG L A + + + GQE+ A+ Sbjct: 157 DAA------GTRHALYDPAAGTGVLLGRAADRL------AGRGVAVDLFGQEISARACAI 204 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 C A ML+R +I G+TL+ D +RF L+NPPFG W + V+ Sbjct: 205 CQADMLLRGRNP-------AHILPGNTLAVDHHASRRFARMLANPPFGVDWRAIRPLVQA 257 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 EH G GRF GLP+++DGSMLF++HL ++ P GG R +V + L G A SGE Sbjct: 258 EHATGSAGRFAAGLPRVADGSMLFMLHLLARMRAPARGGARVGMVTHGAALAGGGADSGE 317 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS- 433 S IRR L+++DLI+ ++ALP D+F T IATY+WIL NRK R+G V+L++AT LW Sbjct: 318 SAIRRHLVDHDLIDTVIALPGDMFVNTGIATYVWILDNRKPAGRQGMVRLVDATGLWRRC 377 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGK------------------------------ 463 R+ G+KRR + ++ ++ + Sbjct: 378 PRSSGEKRREMTQAHIATVVQAALAGTDMDLIVQPGADGAPARWQAVACDGPEGQDGTGC 437 Query: 464 --FSRMLDYRTFGYRRIKVLRPLR 485 SR++ R F YR + V R +R Sbjct: 438 VPLSRIVPGRDFLYRSVSVERRVR 461 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656 + +F R + P P A +D G I+F R+F + P R L I AE Sbjct: 477 DDPDSWFARMILPFDPTAKLDMARCA--------TGCAISFARYFSRPAPPRPLAAIRAE 528 Query: 657 LKGVEAQIATLL 668 L+ A++A L+ Sbjct: 529 LRRSMARLAALM 540 >gi|160939420|ref|ZP_02086770.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC BAA-613] gi|158437630|gb|EDP15392.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC BAA-613] Length = 522 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 110/492 (22%), Positives = 194/492 (39%), Gaps = 73/492 (14%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48 M + L N +W A L G+ + +F IL L Sbjct: 1 MDNSIQAHQKELCNKLWAMANALRGNMEAYEFKNYILGMIFYYYLSDRTEKYMTNLLKDD 60 Query: 49 ----------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 E ++AV E+ L G I+ + + N S + + L + Sbjct: 61 NISYEDAWTDEEYKTAVVEEALRDLGFIIEPQFLFRKMVKMVENRS-FDIEFL-QKAINS 118 Query: 99 NLESYIASFS-DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 +ES + + S ++ +F D ST +L +++ ++ KI + I + Sbjct: 119 LMESTLGNDSQEDFDGLFSDMQLDST--KLGHTVKDRSAVMAKIIASLDEINFSVEDTKI 176 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ N YE+LI +F + + A +F TP L L ++ DP Sbjct: 177 DVLGNAYEYLIGQFAATAGKKAGEFYTPSGPAELLCRLACLGLTD--------VKDAADP 228 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L ++ +GQEL T+ + M++R + Sbjct: 229 TCGSGSLLLRLKSYANVRN----------YYGQELTSTTYNLARMNMILRGI-----PYR 273 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + NI G TL D F +F ++NPP+ KW D +E N L S Sbjct: 274 NFNIYNGDTLEHDYFGDMKFRVQVANPPYSAKWSGDLSFMEDPRFNEY-----GKLAPKS 328 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391 F+ H+ + ++ GRA ++L LF G A E IR+ L++ ++++A++ Sbjct: 329 KADFAFVQHMVHHMDED----GRAVVLLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVI 381 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T I + +L R+ + + I+A+ + + GK + I+ + + Sbjct: 382 GLPANLFFGTGIPVCVLVL-KRERNDNADNILFIDASGDFEA----GKNQNILRECDIDK 436 Query: 452 ILDIYVSRENGK 463 I++ Y RE+ Sbjct: 437 IVETYERREDVD 448 >gi|21229943|ref|NP_635860.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766819|ref|YP_241581.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv. campestris str. 8004] gi|21111454|gb|AAM39784.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572151|gb|AAY47561.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv. campestris str. 8004] Length = 538 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 108/516 (20%), Positives = 197/516 (38%), Gaps = 81/516 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT+ L +W A+ L G DF +L F LR L E + + Y Sbjct: 1 MTKDDQK--ELGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGSDY 58 Query: 60 LAFGGSNI---------------DLESFVKVA--GYSFYNTSEYSLSTLGSTNTRNN--L 100 D+ +F + + +Y + + + N L Sbjct: 59 PDAKTIGNSDKTPLSVWYASNPGDVAAFEQQMRRKAHYVIKPKYLWGNIVNLAKKQNHDL 118 Query: 101 ESYI---------ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELH 146 + SF + +F + + +S +L ++ L I + Sbjct: 119 LDTLQQGFKHIEEDSFESEFQGLFSEINLAS--DKLGRKYDDRNAKLCSIISEIARGMAL 176 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+LI +F + + A +F TP+++ ++ +A++ G + Sbjct: 177 SAKTDS--LGDAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEPKTGPRGKL 234 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +++D CG+G L + N + + G +GQE T+ + ML+ ++ Sbjct: 235 DSVFDFACGSGSLLLNIRNRMTNSGGSIGK-----IYGQEYNVTTYNLARMNMLLHGVK- 288 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 D I G TL D + RF ++NPPF +WE + + Sbjct: 289 ----DTEFEIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQ----- 339 Query: 319 GELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 RF G+ S FL+H L+ G AI+L LF G E++I Sbjct: 340 --DARFKNHGVAPKSAADFAFLLHGLQYLKDD----GVMAIILPHGVLFRGGK---EADI 390 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 RR LL++ I+ ++ LP +LF+ T I + +L K V INA + Sbjct: 391 RRKLLDDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAGHFAK---- 443 Query: 438 GKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472 GK++ + D+ ++I++ Y +R + ++SR + + Sbjct: 444 GKRQNQLTDEHIQRIVNTYQNRNKQDRYSRCVSMKE 479 >gi|153000715|ref|YP_001366396.1| type I restriction-modification system, M subunit [Shewanella baltica OS185] gi|151365333|gb|ABS08333.1| type I restriction-modification system, M subunit [Shewanella baltica OS185] Length = 847 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 105/513 (20%), Positives = 194/513 (37%), Gaps = 103/513 (20%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKNELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF + + + L I S ++ + K + + DF Sbjct: 45 YKGDPYGMIVVPKGASF-----DDMIAAKNDKEIGDKLNKIIGSLAEENDLKGVIDVADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D ++ + YE+L+R F +E + Sbjct: 100 NDE-DKLGKGKEMVDRLTKLVGIFQGLDLTGNRADGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ + + T+YDPTCG+G L A N + Sbjct: 159 QFYTPSEVSQILAKVV------GIQNNTPQDATVYDPTCGSGSLLLKASN---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 P L GQE++ T A+ M++ + + I +G+TL+ + K Sbjct: 204 APRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWKGNTLADPQWKDGANKLK 256 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K N GRF G P +G FL+H+ L+ Sbjct: 257 TFDFAVANPPFSNKN----WTSGLNPLNDPYGRFTWGTPPEKNGDYTFLLHIITSLKST- 311 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A++L LF G A E+ IR+ L++ I+ I+ LP +LF+ T I + ++ Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRQNLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365 Query: 411 SN---RKTEERRGK---------------------------VQLINATDLWTSIRNEGKK 440 +K G+ + +I+A+ + +G K Sbjct: 366 DKEHAQKAAVHFGEALQGERPLIEGHGNDVKNNQTHITGRSIFMIDASKGFI---KDGNK 422 Query: 441 RRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 R + +I+D++ + FSR++ Sbjct: 423 NR-LRSQDIHKIVDVFNKGLELERFSRLVTIDE 454 >gi|224282780|ref|ZP_03646102.1| putative type I restriction-modification system methyltransferase subunit [Bifidobacterium bifidum NCIMB 41171] gi|313139939|ref|ZP_07802132.1| type I restriction-modification system [Bifidobacterium bifidum NCIMB 41171] gi|313132449|gb|EFR50066.1| type I restriction-modification system [Bifidobacterium bifidum NCIMB 41171] Length = 524 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 110/557 (19%), Positives = 201/557 (36%), Gaps = 71/557 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-- 59 ++ A L+ +W A DL G+ T F IL R L + + ++ Sbjct: 5 AKYQAQAGELSQKLWAIANDLRGNMDSTKFRNYILGTIFYRYLSERTKDYMQEILKEDGL 64 Query: 60 ---LAFGGSNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFS 108 AF + + Y +L R N+E Y + + Sbjct: 65 TYEQAFADDDYRPVVEQWSIEHLGYIIRPENLFGELVRKIVRPDGDADRFNVEDYERAVN 124 Query: 109 D------------NAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVP 151 + +F D L L+ K+ S I+ Sbjct: 125 ELIGSTMGQASEAAFSGLFNDMKLQD--PDLGDTVAARTSLIAKVIVKISEIDFKLADSQ 182 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 V+ Y LI F S+ + + +F TP L L D RT+ D Sbjct: 183 FDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA--------RTVGD 234 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 TCG+ L + H+ + +GQE T+ + ML+ ++ Sbjct: 235 CTCGSASMLLEVQKHLT-------TGRVGHFYGQENNATTYNLARMNMLMHGVD-----Y 282 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 +I +G TL +D + + + NPP+ K++ + ++ +G LP Sbjct: 283 QHFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDGNPALLDDPRYSG-----AGKLPPK 337 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390 S F+ H+ ++ GR A++L LF G A E IR++++++ + ++A+ Sbjct: 338 SHADYAFIEHMVYHMDDND---GRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNRLDAV 391 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + L +LF T+I L +L K G V I+A+ + GK + + D + Sbjct: 392 IGLAPNLFHGTSIPVCLLVL-KSKRNGNSGNVLFIDASKEF----KPGKNQNTLEDAHIQ 446 Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y +R + KF+ + D + P R ++ L A K Sbjct: 447 KIVEAYKNRADVDKFAHVADMAEIEANGWNLNIP-RYVDTFEEEEPVDLAAVRDDLKRIE 505 Query: 510 LHQSFWLDILKPMMQQI 526 + +D ++ M+ Q+ Sbjct: 506 SEKKAAIDKVESMLHQL 522 >gi|324992013|gb|EGC23935.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK405] Length = 533 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 122/571 (21%), Positives = 210/571 (36%), Gaps = 73/571 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51 E T ++ SL +W +A+ L D+ +L + L L + Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVVETMEEETES 61 Query: 52 RSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 Y ++ E + ++ + + + L LE F Sbjct: 62 LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPDLTFTALVDRVNEGIFQLEDLAQGF 121 Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + + +FED D S +L ++ L+ + K + +E+ ++ Sbjct: 122 RDIEQCDELYENLFEDIDLYSK--KLGATPQKQNQLVAAVMKELAVLEV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A P + GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKFSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGFYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y SRE KFS + Y + P + ++ E + Sbjct: 440 LEAYKSREEIDKFSHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAI 499 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 +S + +L+ + Q + +K+ +K Sbjct: 500 ESQTVSLLEMLNQLHGTTPETDVELKQFLKE 530 >gi|239994805|ref|ZP_04715329.1| type I site-specific deoxyribonuclease [Alteromonas macleodii ATCC 27126] Length = 530 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 105/482 (21%), Positives = 184/482 (38%), Gaps = 74/482 (15%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE------------------CALEPTR 52 L +W A + G+ +F IL F + L A++ T Sbjct: 9 LEKQLWNIANSMRGNMSADEFRDYILGFIFYKYLSERMDIYADELLKADDIKFDAIDETT 68 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105 +E A ID + F+ ++ L + Sbjct: 69 DEGQEYLSAIQEEAIDHLGYFLKPSELFHVLAQ---KGEAGEFILQPLTEVLNHIEQSTM 125 Query: 106 --SFSDNAKAIFEDFDFS-STIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + D+ +F+D D + + + + EKA L+ KI + I+ V+ + YE Sbjct: 126 GTAAEDDFNGLFDDIDLTSNKLGKTEKAKNELVSKILAHLDAIDFLHHETDIDVLGDAYE 185 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI F S + A +F TP V L L+ ++++YDPTCG+G L Sbjct: 186 YLIGMFASGAGKKAGEFYTPPMVSKLLAKLVTMGK--------TKLKSVYDPTCGSGSLL 237 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 V + G GQE P T+ + M++ + +IQQ Sbjct: 238 LRVAKEVKEVGK---------YCGQESNPSTYNLARMNMILHGVH-----YRQFDIQQDD 283 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL +RF ++NPPF W + + E L S F+ Sbjct: 284 TLETPHHIEERFEAVVANPPFSANWSASQGFLSDERFQDY-----GKLAPKSKADFAFVQ 338 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399 H+ ++L + G A+VL LF G A E IR+ L++N + ++ ++ LP ++F+ Sbjct: 339 HMVHQL----DENGTMAVVLPHGVLFRGAA---EGHIRKHLIKNKNYLDVVIGLPANIFY 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L +K + + + I+A+ + N + I ++ +IL+ R Sbjct: 392 GTSIPTCILVL--KKHRQHKDNILFIDASQNFGKATN----QNYIREEDLARILEAVDER 445 Query: 460 EN 461 E Sbjct: 446 EQ 447 >gi|312865348|ref|ZP_07725576.1| type I restriction-modification system, M subunit [Streptococcus downei F0415] gi|311099459|gb|EFQ57675.1| type I restriction-modification system, M subunit [Streptococcus downei F0415] Length = 533 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 123/576 (21%), Positives = 214/576 (37%), Gaps = 75/576 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 M+E ++ SL +W +A+ L D+ +L + L + Sbjct: 1 MSEI-QTSQSLYQALWNSADILRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAKTMEQET 59 Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIA 105 E Y ++ ++V S+ + + + L LE Sbjct: 60 QDLDQALELYRSYYADEETHADLIEVTKDEMSYAIEPDLTFTALVQEINAGTFQLEHLAQ 119 Query: 106 SFSDNAKA------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F + + +FED D S +L ++ + + K + +++ + Sbjct: 120 GFRNIEQDDELFENLFEDIDLYSK--KLGATPQKQNQTIANVMKELAVLDV--AGHAGDM 175 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F ++ + A +F TP+ V L T + L + +LYDPT Sbjct: 176 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIALMGRED------KQGFSLYDPTM 229 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L +A + P + GQEL T + M++ + + ++ Sbjct: 230 GSGSLLLNAKKYSH-------KPNTVAYFGQELNTSTFNLARMNMILHGVPIE-----NQ 277 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 + TL +D F L NPP+ KW D ++ RF P L Sbjct: 278 KLHNADTLDEDWPTQEPTNFDAVLMNPPYSAKWSADAGFLQ-------DPRFSPFGKLAP 330 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H L+ GG AIVL LF G A E IR+ LLE I+ + Sbjct: 331 KSKADFAFLLHGYFHLKQD---GGVMAIVLPHGVLFRGNA---EGAIRKHLLEEGAIDTV 384 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++FF T+I T + IL + E V I+A+ +T GK + I+ D Sbjct: 385 IGLPANIFFNTSIPTTVIILKKDRQER---DVYFIDASKEFTK----GKNQNIMEDSHLE 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +IL+ Y R++ F+ + + + P R ++ +A L + K + Sbjct: 438 KILETYRKRKDSDKFAHLASFEEIEENDFNLNIP-RYVDTFEEEEVAPLTEIVANIKTTN 496 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 L M+ Q+ E + Sbjct: 497 QAIEEKTSELMAMLGQLKGTNPESQKELEDFLKDLK 532 >gi|301156219|emb|CBW15690.1| unnamed protein product [Haemophilus parainfluenzae T3T1] Length = 556 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 96/577 (16%), Positives = 197/577 (34%), Gaps = 95/577 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56 L +W +A+ L ++ ++L L+ + + + ++ Sbjct: 21 LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSDPENPLY 80 Query: 57 ---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 E+Y + ++ + A F+ + + + + N+ + + Sbjct: 81 LDRTFYDTDEEYQEALAAELENRDYY-TADNVFWVPQQARWDEIKAVSIL-NIGAELPWG 138 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 FS AK I + FD +L+ L + FS T Sbjct: 139 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 198 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 199 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 247 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 248 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 304 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 305 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 351 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 352 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 405 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +G+V I+A + R Sbjct: 406 DLVECMVALPGQLFTNTQIPACIWFLNRNKAR--KGEVLFIDARQIGYMKDRV---LRDF 460 Query: 445 NDDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 D +I D + + F + + VL P R ++ Sbjct: 461 TADDIAKIADTLHAWQQSDGYEDQAAFCKSASLEEIASKEY-VLTPGRYVGTAEQED-DG 518 Query: 498 LEADITWRKLSPLHQSFW---LDILKPMMQQIYPYGW 531 + + L+ L + + ++ + + + G+ Sbjct: 519 VPFAEKMQNLTDLLKEQFAKSAELEAEIKKNLGGLGY 555 >gi|183981973|ref|YP_001850264.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium marinum M] gi|183175299|gb|ACC40409.1| type I restriction/modification system DNA methylase HsdM [Mycobacterium marinum M] Length = 484 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 89/459 (19%), Positives = 160/459 (34%), Gaps = 71/459 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L + +WK AE L G + + VIL L+ + A + + Sbjct: 4 STMKELKDTLWKGAEKLRGSIPASQYKDVILGLVFLKFVSDARDGRK------------- 50 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 F E L ++ I + + + ++T+ Sbjct: 51 -------------PFVVPPEARWEALAGNAKSPDIGQLIDTAMLSVMT--ANPSLAATLP 95 Query: 126 RL---EKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 +L L ++ + + P +M +YE+ + F +F TP Sbjct: 96 QLYHKVDQRRLGELVEVLGAARFSGRPSHRARDLMGEVYEYFLGNFARAEGRRGGEFFTP 155 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 VV + +L +YDP CG+GG + P + Sbjct: 156 PSVVRVIVEIL-----------EPSSGRIYDPCCGSGGMFVQTERFICAHDGD---PAQI 201 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +GQE +T + + + ++ + G T + D G Y ++NPP Sbjct: 202 SIYGQESVEQTWRMAKMNLAVHGIDDAGLGA-----RWGDTFATDQHDGVPMDYVMANPP 256 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F ++ ++ + R+ G P ++ + ++ H+ +KL G A Sbjct: 257 FN---------IKDWARDEQDPRWRFGTPPAANANFAWIQHILSKLAPTGQAGVVMA--- 304 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + S +GE IR +++ DL+ +VALPT LF T I LW + K G Sbjct: 305 NGSM---SSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTGIPVCLWFFAKDKKAR-SG 360 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 +V I+A L + + R + DD +I D Y Sbjct: 361 QVLFIDARGLGSMVDRCE---RTLTDDDVARIGDTYHGW 396 >gi|300173281|ref|YP_003772447.1| type I restriction-modification system subunit M [Leuconostoc gasicomitatum LMG 18811] gi|299887660|emb|CBL91628.1| type I restriction-modification system, M subunit [Leuconostoc gasicomitatum LMG 18811] Length = 531 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 115/572 (20%), Positives = 213/572 (37%), Gaps = 72/572 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63 A SL +W A+ L G +++ +L + L R ++ Sbjct: 2 ATSLEQQLWAAADILRGKMDASEYKNYLLGLVFYKYLSD--AELREVYEQENGQTKDFPD 59 Query: 64 --------------GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 + E GY T + + NL A F++ Sbjct: 60 RSVQFQTLTEWFKDDAEELTEIIQLQKGYFIQPTQLFYTYRQQADRYEFNLTDLQAGFNE 119 Query: 110 ------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 K +F D D +ST ++ + ++ + I+L V+ + YE Sbjct: 120 LERQGDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLF--EHDGDVIGDAYE 177 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI +F + + A +F TP+ V + + + + +YDPT G+G + Sbjct: 178 YLIGQFAAGAGKKAGEFYTPQAVSRIISEITSIGQEDRT------PFHIYDPTMGSGSLM 231 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + ++++ P + HGQEL T+ + +++ ++ + N+ G Sbjct: 232 LNIRRYLSN-------PKQIHYHGQELNTTTYNLARMNLILHGVDQERM-----NLNNGD 279 Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 TL D T + + + + NPP+ KW + + RFG L S F Sbjct: 280 TLDSDWPTEEPYQFDAVVMNPPYSAKWSAADKFLSDQR----FERFG-KLAPKSKADFAF 334 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++F Sbjct: 335 LLHGFYHLKDT----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIF 387 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+I T + IL + V I+A+ + +N + I+ +I+ Y Sbjct: 388 YGTSIPTTVIILKKHRATR---DVLFIDASSDFDKQKN----QNILLPAHIEKIVKAYKQ 440 Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 RE+ K+S + + + P + ++ + ++ K+ D Sbjct: 441 REDADKYSHVASFEEIKENDFNLNIPRYVDTFEEEEPVNLVKVSNEIAKIENELSKNQSD 500 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 +L MM QI +E ++ + K + Sbjct: 501 LL-DMMNQITVTKESEEIIEATKKILAGGQHE 531 >gi|327470618|gb|EGF16074.1| site-specific DNA-methyltransferase [Streptococcus sanguinis SK330] Length = 407 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 81/424 (19%), Positives = 169/424 (39%), Gaps = 44/424 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W A+ L G +++ KVI+ L+ + A E + + Sbjct: 12 MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLIAE-- 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G + + F+ + S + + + + + ++ Sbjct: 70 ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124 Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + ++ +L ++ F+ I+++ ++ YE+ I +F + + Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V +L +YDP CG+GG + + + + Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L GQE +T + M+IR +++D + ++ DL + +Y Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + R+ G P S+ + ++ H+ + ++ G+ Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 +VL++ L SGE +IR+ ++E+DLIE I+ALP +LF+ I LW +S K Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNKN 392 Query: 416 EERR 419 ++ R Sbjct: 393 KKER 396 >gi|76787763|ref|YP_330354.1| type I restriction-modification system, M subunit [Streptococcus agalactiae A909] gi|77406552|ref|ZP_00783602.1| type I restriction-modification system, M subunit [Streptococcus agalactiae H36B] gi|77411600|ref|ZP_00787941.1| type I restriction-modification system, M subunit [Streptococcus agalactiae CJB111] gi|76562820|gb|ABA45404.1| type I restriction-modification system, M subunit [Streptococcus agalactiae A909] gi|77162317|gb|EAO73287.1| type I restriction-modification system, M subunit [Streptococcus agalactiae CJB111] gi|77174830|gb|EAO77649.1| type I restriction-modification system, M subunit [Streptococcus agalactiae H36B] Length = 526 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 116/499 (23%), Positives = 193/499 (38%), Gaps = 73/499 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---- 59 SL +W +A+ L G D+ +L + L L E++ Sbjct: 1 MAEKITSLRQALWNSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEEHFNTF 60 Query: 60 --------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIASF- 107 A+ ++ + V G Y + L + LES F Sbjct: 61 TDTQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQGFR 120 Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 ++ + +F+D D S +L ++ + + K + I+ ++V + + Sbjct: 121 DIEQSGEDFENLFKDIDLYSK--KLGSTPQKQNQTIANVMKTLNEIDF--ESVDGDTLGD 176 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI F SE + A +F TP+ V HL T ++ + TLYDP +G Sbjct: 177 AYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFSGRED------QKGMTLYDPAMESG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L +A + + +GQE+ T+ + M++ + ++++ Sbjct: 231 TLLLNAKKYSHQ-------SDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHLS 278 Query: 278 QGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333 TL D T + F L NPP+ KW + RF G L S Sbjct: 279 NADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAPKSK 331 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L+ G AIVL LF G A E +IR+ LLE I+ I+ L Sbjct: 332 ADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGL 384 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P+++F+ T+I T + IL +T + V I+A+ + GK + + D ++IL Sbjct: 385 PSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDAHIKKIL 437 Query: 454 DIYVSRENGKFSRMLDYRT 472 D Y SR+N L Sbjct: 438 DAYKSRDNSDKFSYLASFD 456 >gi|217425685|ref|ZP_03457176.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei 576] gi|217391361|gb|EEC31392.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei 576] Length = 870 Score = 294 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 128/672 (19%), Positives = 233/672 (34%), Gaps = 116/672 (17%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W++ + L G + + +L ++ + Sbjct: 71 MAIKKSDLYSSLWESCDLLRGGMDASQYKDYVLVLLFIKYVSD----------------K 114 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122 + G SF + L + + + I A + + DF+ Sbjct: 115 YAGQRYAPITIPEGASF-----ADMVALKGKPDIGDQINKKIVGPLAAANKLSDMPDFND 169 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 + +L L + F +L D ++ + YE+L+R F +E + Sbjct: 170 S-GKLGTGAEMVRRLTDLIAVFENPDLDFSKNRADGDDILGDAYEYLMRHFATESGKSKG 228 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ + T+YDPTCG+G L + Sbjct: 229 QFYTPAEVSRIMAQII-----GISSTRTSSETTVYDPTCGSGSLLLKVGDA--------- 274 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291 P + +GQE + T + M++ + + I QG+TL+ F K Sbjct: 275 APTSVTLYGQEKDSATSGLARMNMILH-------DNPTALIGQGNTLTDPKFRDGDRLKT 327 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + + + N GRF G+P G +L+H+ L+ Sbjct: 328 FDFVVANPPFSDK----RWSTGLDPFNDPYGRFDTFGVPPAKQGDYAYLLHIVRSLKST- 382 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A +L LF G A E+EIRR L+ I+ I+ LP +LF+ T I + ++ Sbjct: 383 ---GKGACILPHGVLFRGNA---EAEIRRNLIRYGYIKGIIGLPANLFYGTGIPACIIVV 436 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + R+G + +I+A+ + +G K R + + +I+D++ ++ Sbjct: 437 DKEDAQARKG-IFMIDASQGFI---KDGPKNR-LREQDIHRIVDVFNRQDESDPRYA--- 488 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 R + V + F L+ + L D + + Sbjct: 489 -----RMVSVAEIEKNDFNLNLPRYIDSSVAEDIQDLKGHLHGGIPDA--DVDALDDYWA 541 Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIV----------AFINAFGRKDPR--ADPVTDVN 578 S K K + K+ I AFI G + A V + Sbjct: 542 ICPSLKKTLFKPRTPGYYDLAVDKAAIKSTILQHPQFAAFIEEMGAHFEQWRARTVQTLK 601 Query: 579 G-EW----------IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY----IDKIFIDE 623 E + D L YE P I Y +V H+ D + D ++ Sbjct: 602 ALEPGFHPKQLIVELADGLLNHYEGKPL---IDAY---DVYQHLMDYWEETMQDDAYLLA 655 Query: 624 KDKEIGRVGYEI 635 D + + Y I Sbjct: 656 SDGWVAKT-YRI 666 >gi|156976837|ref|YP_001447743.1| type I restriction-modification system specificity subunit [Vibrio harveyi ATCC BAA-1116] gi|156528431|gb|ABU73516.1| hypothetical protein VIBHAR_05613 [Vibrio harveyi ATCC BAA-1116] Length = 873 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 96/460 (20%), Positives = 182/460 (39%), Gaps = 58/460 (12%) Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGSNIDLESFVKVAGY 78 +++ + I L+R+ + ++ V E A + + Sbjct: 4 NIFR--LDQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQF 61 Query: 79 SFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN-----AKAIFEDFDFSSTIARLEKAG 131 FY + L TN + L + + + + + + +F+ + + Sbjct: 62 DFYVPEKARWENLKHLKTNAGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIPD 121 Query: 132 -LLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 L + ++F I L + ++ YE+LI+ F + +F TP +VV L Sbjct: 122 ERLVEFIQHFDSIPLSNEDFELPDLLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVE 181 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 +L P +YDPTCG+GG L + N+V + G + K + GQE Sbjct: 182 IL----------EPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKK---IHLLGQEDNG 228 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKK 304 T ++C M++ +I+ G TL+ L + F ++NPPF + Sbjct: 229 GTWSICKMNMILHG-------SGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQN 281 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 ++K +++ RF +P+ G ++F+ H+ L+ G+AA+V+ Sbjct: 282 YKKADMQLKE--------RFNTFMPESGKKGDLMFVQHMVASLK----ANGKAAVVMPHG 329 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G E R+ +E ++EA++ LP LF+ T I + +++ E R V Sbjct: 330 VLFRGAE---ERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVINKG-GRENRDSVL 385 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 INA + EGK + + + +I +Y + Sbjct: 386 FINADREY----REGKNQNSLRPEDIEKITSVYKAMLEDD 421 >gi|283458000|ref|YP_003362607.1| type I restriction-modification system methyltransferase subunit [Rothia mucilaginosa DY-18] gi|283134022|dbj|BAI64787.1| type I restriction-modification system methyltransferase subunit [Rothia mucilaginosa DY-18] Length = 569 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 119/555 (21%), Positives = 215/555 (38%), Gaps = 80/555 (14%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 A L + IW+ A DL G DF + +L R L +++ ++ Sbjct: 45 NRNAERAQLHSTIWRIANDLRGSVDGWDFKQYVLGMLFYRYLS----ESQARFIDENYTL 100 Query: 63 GGSNIDLESFVKVAGYS--------FYNTSEYSLSTLGST-----NTRNNLESYIASF-- 107 G ++L+ G F+ S + + N L + +F Sbjct: 101 KGPFVELKDEDCNEGGRQVVLRERGFFLLPSQLFSNVYAKARQDQNLNETLANVFKAFEE 160 Query: 108 -------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP--DTVPDR 153 +N K +F+DF S +L + L K+ +G+ L + + Sbjct: 161 SARGTESEENVKGLFDDFVLDS--NKLGVSPAARHENLLKLMDAVAGMNLGKGYEDSEND 218 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + + + ++ TP++V L + +D DA IR++YDP Sbjct: 219 AFGDAYEYLMGMYAANAGKSGGEYYTPQEVSELLAKIAMDGRDAD------KIRSVYDPA 272 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + G + K GQE+ T+ +C M++ + D Sbjct: 273 CGSGSLLL---KFKRELGKNSKGL---RFIGQEINLTTYNLCRMNMMLHGVPVDEFS--- 323 Query: 274 KNIQQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I G TL + F +SNPP+ KW+ D D R+ P Sbjct: 324 --IAHGDTLIDPKHRNGKNPKFVEPFGAIVSNPPYSTKWKGDDDPT-----LKHDDRYAP 376 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S + F MH+ L G AAIV L+ A E IR +LL Sbjct: 377 AGVLAPKSKADLAFTMHMLKSLHEA----GTAAIVEFPGVLYRSGA---ERTIREYLLIE 429 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + ++A++ LP++LF+ T+IAT + +L + ++ V ++A+ L+ GK + I+ Sbjct: 430 NRVDAVIQLPSNLFYGTSIATCILVLKKGRRKDHS--VLFVDASALFDK----GKNQNIL 483 Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 R +ILD+ +RE + FS ++ + + + + + + +E + Sbjct: 484 GKSHREKILDVLATREEREHFSALVPVQKLLEQEANLAVSSWVEPEDTRERVDIVELNSR 543 Query: 504 WRKLSPLHQSFWLDI 518 + ++I Sbjct: 544 IENIVARQAQLRVEI 558 >gi|257078398|ref|ZP_05572759.1| type I restriction modification system protein HsdMI [Enterococcus faecalis JH1] gi|294780143|ref|ZP_06745515.1| type I restriction-modification system, M subunit [Enterococcus faecalis PC1.1] gi|256986428|gb|EEU73730.1| type I restriction modification system protein HsdMI [Enterococcus faecalis JH1] gi|294452686|gb|EFG21116.1| type I restriction-modification system, M subunit [Enterococcus faecalis PC1.1] Length = 529 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + +K S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLKDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|331650405|ref|ZP_08351477.1| HsdM site-specific DNA-methyltransferase, type I modification [Escherichia coli M605] gi|331040799|gb|EGI12957.1| HsdM site-specific DNA-methyltransferase, type I modification [Escherichia coli M605] Length = 568 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 100/607 (16%), Positives = 201/607 (33%), Gaps = 115/607 (18%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56 M L + WK A+ L + ++ V+L L+ + A + + ++ Sbjct: 1 MDNAEQQFLNDLDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFDARQKELKGLF 60 Query: 57 --------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG---- 92 E Y ++++ + F+ TL Sbjct: 61 EDKSNPDNIYALSRDDYDTEEAYQQAIAEELEVQDYY-TEKNVFWVPKLARWETLKTNAA 119 Query: 93 --------STNTRNNLE------------SYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132 ++ ++ I + + K I L Sbjct: 120 LPVGTVLGKDDSGKDIVMTSVSKLIDIALDTIENSNPKLKNILNRIGHYQLG-----NDL 174 Query: 133 LYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 L + FS + ++ ++YE+ + +F + + TP+ +V Sbjct: 175 LISLINVFSDTSFSEPKYNGVKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIV 234 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPI 239 L +L +YDP G+GGF + + + Sbjct: 235 TLIVEML-----------QPYNGRVYDPAMGSGGFFVSSDRFIEAHADEKHYNAAEQKRN 283 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 + +GQE P T + M+IR ++ + + + T D R + ++NP Sbjct: 284 ISVYGQESNPTTWRLAAMNMVIRGIDFNFGKQNA------DTFLNDQHPDLRADFVMANP 337 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF K K + R+ G P + + ++ H+ + L G A ++ Sbjct: 338 PFNMKEW-------WNAKLEDDVRWQYGTPPQGNANFAWMQHMIHHLAPK---GSMALLL 387 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415 + S N + E EIRR ++E DL+E +VALP LF T I +W+L+ K+ Sbjct: 388 ANGSMSSN---TNSEGEIRRAIIEADLVECMVALPGQLFTNTQIPACIWLLTKDKSGSNG 444 Query: 416 -EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRT 472 R+G+V I+A + + R R + D ++I D + S + + + Sbjct: 445 KAHRKGEVLFIDARQIGFMKERVL----RDFSTDDIKKIADTFHSWQMDKDY-----KDE 495 Query: 473 FGYR-RIKVLRPLRMSFILDKTGLA-RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ + + F+L +E D + + + +++ Sbjct: 496 AGFCFAATLDDIKKNDFVLTPGRYVGAVEKDEDDEPFAEKMVWLTTCLKEQLIESAKLEK 555 Query: 531 WAESFVK 537 ++ +K Sbjct: 556 QIKADLK 562 >gi|254428124|ref|ZP_05041831.1| N-6 DNA Methylase family [Alcanivorax sp. DG881] gi|196194293|gb|EDX89252.1| N-6 DNA Methylase family [Alcanivorax sp. DG881] Length = 571 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 102/610 (16%), Positives = 193/610 (31%), Gaps = 116/610 (19%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M L + +WK A L ++ ++L L+ + A + + E + Sbjct: 1 MNNTEQQFLKELDDKLWKAACKLQASMDAANYKHIVLGLIFLKYVSDAFAERQDELLELF 60 Query: 60 LAFGGSNI---DLESFVKVAGY------------------SFYNTSEYSLSTLGSTNT-- 96 NI E F A Y F+ TL Sbjct: 61 QTDDDDNIYYLPREDFDSDAEYQQAIEDELEVLDYYREANVFWMPKAARWQTLKEKAVLP 120 Query: 97 ----------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134 +N I + K I + L Sbjct: 121 TGTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSNAKLKGILNRIGQYQQ-----ENETLI 175 Query: 135 KICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + FS + ++ ++YE+ + F + + TP+ +V L Sbjct: 176 GLINTFSDTSFTKPVFSGEKLNLHSKDILGHVYEYFLGEFALAEGKQGGQYYTPKSIVTL 235 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILV 241 +L +YDP G+GGF + + + S + + Sbjct: 236 IVEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIENHASEQHYDAAEQKKHIS 284 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQE P T + M IR ++ + + +T + D R + ++NPPF Sbjct: 285 VYGQEANPTTWKLAAMNMAIRGIDFNFGT------KNANTFTNDQHPDLRADFVMANPPF 338 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 K + R+ G P + + ++ H+ + L G A ++ + Sbjct: 339 NMK-------DWWSESLADDARWQYGTPPKGNANFGWMQHMLHHLAPT---GSMALLLAN 388 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------ 415 S + E EIR+ L+E D +E +VALP LF T I +W L+ KT Sbjct: 389 GSM---SSKTNNEGEIRKRLIEEDRVECMVALPGQLFTNTQIPACIWFLTKDKTNGMVRN 445 Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 +RRG+ I+A +L + R R ++ +I D + + + + + Sbjct: 446 EKKRDRRGEFLFIDARNLGFMKDRVL----RDFTNEDIAKIADTFHAWQQDEGYEDVA-- 499 Query: 472 TFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ + + + ++L + + + + +Q Sbjct: 500 --GFCKSSTLDEIKKYDYVLTPGRYVGAQEQ---EDDGEPFAEKMARLTEQLKEQFAESD 554 Query: 531 WAESFVKESI 540 E+ VK+ + Sbjct: 555 RLEAEVKQHL 564 >gi|325695188|gb|EGD37089.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK150] Length = 535 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 194/498 (38%), Gaps = 74/498 (14%) Query: 1 MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------ 47 MT+ T ++ L +W +A+ L D+ +L + L Sbjct: 1 MTQETIQTSQRLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKLLFFVAETMGEE 60 Query: 48 ---LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 LE R Y ++ + Y+ ++ L + LE Sbjct: 61 TEDLEQALDIYRRYYEDEETKADLIDVIKQDLSYAMKPDLTFTNLVLQVNSGTFQLEHLA 120 Query: 105 ASF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 F SD +FED D S +L ++ + + K + +++ Sbjct: 121 QGFRNIEQSDELFENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGD 176 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ + YE+LI +F ++ + A +F TP+ V L T + + TLYDPT Sbjct: 177 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QKGFTLYDPT 230 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L +A + + G + GQEL T+ + M++ + + + Sbjct: 231 MGSGSLLLNAKRYSHEAG-------TVSYFGQELNTATYNLARMNMILHGVPIENQF--- 280 Query: 274 KNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLP 329 + TL +D F L NPP+ KW ++ RF L Sbjct: 281 --LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSAADGFLQ-------DPRFSSFGALA 331 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H L+ GG AIVL LF G A E +IR+ LLE I+ Sbjct: 332 PKSKADFAFLLHGFYHLK---QAGGVMAIVLPHGVLFRGNA---EGKIRKALLEEGAIDT 385 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP ++FF T+I T + IL +T V I+A+ + GK + I+ D Sbjct: 386 VIGLPANIFFNTSIPTTVIILKKDRTNR---DVFFIDASKEFDK----GKNQNIMTDIHI 438 Query: 450 RQILDIYVSREN-GKFSR 466 +IL++Y +RE+ KFS Sbjct: 439 DKILEVYKAREDVNKFSH 456 >gi|256960372|ref|ZP_05564543.1| type I restriction modification system protein HsdMI [Enterococcus faecalis Merz96] gi|293384345|ref|ZP_06630230.1| type I restriction-modification system, M subunit [Enterococcus faecalis R712] gi|293388418|ref|ZP_06632926.1| type I restriction-modification system, M subunit [Enterococcus faecalis S613] gi|312908546|ref|ZP_07767490.1| type I restriction-modification system, M subunit [Enterococcus faecalis DAPTO 512] gi|312908984|ref|ZP_07767846.1| type I restriction-modification system, M subunit [Enterococcus faecalis DAPTO 516] gi|256950868|gb|EEU67500.1| type I restriction modification system protein HsdMI [Enterococcus faecalis Merz96] gi|291078337|gb|EFE15701.1| type I restriction-modification system, M subunit [Enterococcus faecalis R712] gi|291082193|gb|EFE19156.1| type I restriction-modification system, M subunit [Enterococcus faecalis S613] gi|310625513|gb|EFQ08796.1| type I restriction-modification system, M subunit [Enterococcus faecalis DAPTO 512] gi|311290684|gb|EFQ69240.1| type I restriction-modification system, M subunit [Enterococcus faecalis DAPTO 516] gi|315149120|gb|EFT93136.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0012] Length = 529 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + ++ S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|145638854|ref|ZP_01794462.1| transcription elongation factor NusA [Haemophilus influenzae PittII] gi|145271826|gb|EDK11735.1| transcription elongation factor NusA [Haemophilus influenzae PittII] Length = 576 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 96/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------------A 47 L +W +A+ L ++ ++L L+ + Sbjct: 41 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQKKIQAELTDPENPLY 100 Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 + T E+Y + ++ + A F+ + L + N + + Sbjct: 101 FDRTFDDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 158 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 FS AK I + FD +L+ L + FS T Sbjct: 159 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 218 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 219 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 267 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 268 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 324 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 325 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 371 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 372 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 425 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 426 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 480 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I D + + S + + + + F+L E + Sbjct: 481 TADDIAKIADTLHAWQT---SDGYEDQAAFCKSTTLEEIAGNDFVLTPGRYVGTAEQEDD 537 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 538 GVPFAEKMQNLTALLKEQFAKSTELEAEIKKNL 570 >gi|2689699|gb|AAB91416.1| modification subunit [Lactococcus lactis subsp. lactis bv. diacetylactis] Length = 531 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 100/487 (20%), Positives = 185/487 (37%), Gaps = 78/487 (16%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52 L +W +A+ L G +++ +L + L E Sbjct: 5 LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64 Query: 53 SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 + E Y I+ + + FY+ + + N NL A F+ Sbjct: 65 AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118 Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + + +F D D +ST ++ + ++ + I+L V+ + Y Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F + A +F TP+ V + + + ++ +YDP G+G Sbjct: 177 EYLIGMFAEGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ + + HGQEL T + +++ ++ + N+ G Sbjct: 231 MLNIRRYLLNPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL D + + + + + NPP+ KW + RFG L S Sbjct: 279 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++ Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ Y Sbjct: 387 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439 Query: 458 SRENGKF 464 RE+ + Sbjct: 440 KREDIER 446 >gi|117923445|ref|YP_864062.1| type I restriction-modification system, M subunit [Magnetococcus sp. MC-1] gi|117607201|gb|ABK42656.1| type I restriction-modification system, M subunit [Magnetococcus sp. MC-1] Length = 537 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 112/576 (19%), Positives = 199/576 (34%), Gaps = 88/576 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT+ + L +W A+DL G DF +L F LR L E + + Y Sbjct: 1 MTKEE--LSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 58 Query: 60 LAFGGS--------------NIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--- 101 + ++ Y Y S++ + E Sbjct: 59 PKLQEDDRRTPLAVWYAANTEDIPDLEKQMRRKMHYVIHPDYLWSSIYERARTQDAELLQ 118 Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 YI SF+ + +F + + S +L ++ L I + Sbjct: 119 TLQRGFKYIENESFASAFQGLFSELNLHS--EKLGRTPVDRNKKLCAIITKVAEGIAQFS 176 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++ + YE+LI +F + + A +F TP+ + + + ++ + Sbjct: 177 -TDSDILGDAYEYLIGQFAAGSGKKAGEFYTPQSLSTILSRIVTLDSQEPATGKKRKLSC 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + G +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRKQMGTHGIGM-------IYGQEKNITTYNLARMNMLLHGVK--- 285 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G +L D + ++NPPF +WE ++ GE Sbjct: 286 --DSGFQIHHGDSLINDWDMLSEMNPAKKVKCDAIVANPPFSYRWEPNEA-------LGE 336 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L G AI+L LF G ES IR Sbjct: 337 DFRFKSHGLAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGV---ESRIRT 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ ++ LP +LFF T I + +L K V INA++ + GK Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINASEYFEK----GK 442 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 ++ + + I++ Y R+ + RR+++ + + L+ + Sbjct: 443 RQNQLLPEHIDNIVETYQYRKEEERYA---------RRVEMAEIEKNDYNLNISRYVSTA 493 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 L ++ K + G+ E Sbjct: 494 MSEQQIDLGAVNHKLVALEEKIVAATQKHNGFLEEL 529 >gi|270293232|ref|ZP_06199443.1| type I restriction-modification system, M subunit [Streptococcus sp. M143] gi|270279211|gb|EFA25057.1| type I restriction-modification system, M subunit [Streptococcus sp. M143] Length = 533 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 122/572 (21%), Positives = 209/572 (36%), Gaps = 74/572 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51 E T ++ SL +W +A+ L D+ +L + L + + Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 A Y + E + V ++ + + + L + LE F Sbjct: 62 LEAALVVYRNYYEDADTHEDLLAVMKDELNYSIKPDLTFTALVARVNEGTFQLEDLAQGF 121 Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 SD +FED D S +L ++ + + K + +++ ++ Sbjct: 122 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P +V GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDVHIEKI 439 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y SRE KF+ + Y + P R ++ + L ++ + Sbjct: 440 LEAYKSREEIDKFAHLASYEDIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINETNKA 498 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 L M+ Q++ + Sbjct: 499 IESQTASLLDMLNQLHGTTPEADAELKQFLEK 530 >gi|22416339|emb|CAC87150.1| restriction-modification enzyme type I M subunit [Streptococcus thermophilus] Length = 531 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 104/547 (19%), Positives = 205/547 (37%), Gaps = 71/547 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63 A SL +W +A+ L G +++ +L + L + R ++ Sbjct: 2 ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSD--KQLREVYEQENGKTDTFPE 59 Query: 64 -----------GSNIDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD 109 + + Y L + + N NL A F++ Sbjct: 60 RSTLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNE 119 Query: 110 NAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + +F D D +ST ++ + ++ + I+L V+ + YE Sbjct: 120 LERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAYE 177 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI F + + A +F TP+ V + + + ++ + +YDP G+G + Sbjct: 178 YLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------VPFHIYDPAMGSGSLM 231 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + ++ P + HGQEL T + +++ ++ + N+ G Sbjct: 232 LNIRRYLI-------HPNQVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNGD 279 Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 TL D + + + + + NPP+ KW + RFG L S F Sbjct: 280 TLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFAF 334 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++F Sbjct: 335 LLHGFYHLKES----GTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIF 387 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ Y Sbjct: 388 FGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKK 440 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 RE+ + ++ + + + P + ++ + +E + K++ Sbjct: 441 REDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTNLLKINEELVQQEQT 500 Query: 518 ILKPMMQ 524 +L + Sbjct: 501 LLSLIDD 507 >gi|77163968|ref|YP_342493.1| Type I restriction-modification system M subunit [Nitrosococcus oceani ATCC 19707] gi|76882282|gb|ABA56963.1| Type I restriction-modification system M subunit [Nitrosococcus oceani ATCC 19707] Length = 534 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 114/503 (22%), Positives = 183/503 (36%), Gaps = 75/503 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT + L +W A+DL G DF +L F LR L E + + Y Sbjct: 1 MTRD--QLSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 58 Query: 60 LAFGGSN-------------IDLESFVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYI- 104 + D+ +F K Y L + + R E + Sbjct: 59 PKLADDDRRAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQ 118 Query: 105 -----------ASFSDNAKAIFEDFDFSST--IARLEKAGL-LYKICKNFSGIELHPDTV 150 SF+ + +F + + S L L I + T Sbjct: 119 TLAGGFKHIENESFASTFQGLFSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTG 178 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 D + + YE+LI +F + + A +F TP+ V + + ++ + + Sbjct: 179 SDI-LGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVL 237 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 D CG+G L + N + I + +GQE T+ + ML+ ++ Sbjct: 238 DFACGSGSLLLNVRNQM-------GPRGIGMIYGQEKNITTYNLARMNMLLHGMK----- 285 Query: 271 DLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 D I G TL D + ++NPPF +WE D+ GE Sbjct: 286 DTEFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDF 338 Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 RF GL S FL+H + L G AIVL LF G A E+ IR L Sbjct: 339 RFESHGLAPKSAADFAFLLHGLHFLSDE----GTMAIVLPHGVLFRGGA---EARIRTKL 391 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 L++ I+ ++ LP++LFF T I + +L K V INA++ + GK++ Sbjct: 392 LKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKP---DDVLFINASEHFEK----GKRQ 444 Query: 442 RIINDDQRRQILDIYVSRENGKF 464 + +I+D Y R+ + Sbjct: 445 NALRPVDIDKIVDTYQYRKEEER 467 >gi|254436009|ref|ZP_05049516.1| type I restriction-modification system, M subunit [Nitrosococcus oceani AFC27] gi|207089120|gb|EDZ66392.1| type I restriction-modification system, M subunit [Nitrosococcus oceani AFC27] Length = 541 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 114/503 (22%), Positives = 183/503 (36%), Gaps = 75/503 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT + L +W A+DL G DF +L F LR L E + + Y Sbjct: 8 MTRD--QLSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 65 Query: 60 LAFGGSN-------------IDLESFVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYI- 104 + D+ +F K Y L + + R E + Sbjct: 66 PKLADDDRRAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQ 125 Query: 105 -----------ASFSDNAKAIFEDFDFSST--IARLEKAGL-LYKICKNFSGIELHPDTV 150 SF+ + +F + + S L L I + T Sbjct: 126 TLAGGFKHIENESFASTFQGLFSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTG 185 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 D + + YE+LI +F + + A +F TP+ V + + ++ + + Sbjct: 186 SDI-LGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVL 244 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 D CG+G L + N + I + +GQE T+ + ML+ ++ Sbjct: 245 DFACGSGSLLLNVRNQM-------GPRGIGMIYGQEKNITTYNLARMNMLLHGMK----- 292 Query: 271 DLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 D I G TL D + ++NPPF +WE D+ GE Sbjct: 293 DTEFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDF 345 Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 RF GL S FL+H + L G AIVL LF G A E+ IR L Sbjct: 346 RFESHGLAPKSAADFAFLLHGLHFLSDE----GTMAIVLPHGVLFRGGA---EARIRTKL 398 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 L++ I+ ++ LP++LFF T I + +L K V INA++ + GK++ Sbjct: 399 LKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKP---DDVLFINASEHFEK----GKRQ 451 Query: 442 RIINDDQRRQILDIYVSRENGKF 464 + +I+D Y R+ + Sbjct: 452 NALRPVDIDKIVDTYQYRKEEER 474 >gi|10956197|ref|NP_051026.1| type IC modification subunit [Streptococcus thermophilus] gi|6137148|gb|AAF04357.1| type IC modification subunit [Streptococcus thermophilus] Length = 531 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 104/542 (19%), Positives = 204/542 (37%), Gaps = 71/542 (13%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63 A SL +W +A+ L G +++ +L + L + R ++ Sbjct: 2 ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSD--KQLREVYEQENGKTDTFPE 59 Query: 64 -----------GSNIDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD 109 + + Y L + + N NL A F++ Sbjct: 60 RSTLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNE 119 Query: 110 NAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + +F D D +ST ++ + ++ + I+L V+ + YE Sbjct: 120 LERQGEEFSGLFSDIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAYE 177 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI F + + A +F TP+ V + + + ++ + +YDP G+G + Sbjct: 178 YLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------VPFHIYDPAMGSGSLM 231 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + ++ P + HGQEL T + +++ ++ + N+ G Sbjct: 232 LNIRRYLI-------HPNQVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNGD 279 Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 TL D + + + + + NPP+ KW + RFG L S F Sbjct: 280 TLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFAF 334 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++F Sbjct: 335 LLHGFYHLKES----GTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIF 387 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ Y Sbjct: 388 FGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKK 440 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 RE+ + ++ + + + P + ++ + +E + K++ Sbjct: 441 REDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTNLLKINEELVQQEQT 500 Query: 518 IL 519 +L Sbjct: 501 LL 502 >gi|291529890|emb|CBK95475.1| Type I restriction-modification system methyltransferase subunit [Eubacterium siraeum 70/3] Length = 511 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 108/554 (19%), Positives = 217/554 (39%), Gaps = 70/554 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ + R + ++Y G +D +F Sbjct: 5 LWKSADKLRGSVEPAEYKHVVLSLFFLKFAGDKFDAQREMIAKQY---GEKFVDTVAFY- 60 Query: 75 VAGYSFYNT--SEYS--LSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127 FY S +S + + +++ I + K + +RL Sbjct: 61 TKDNVFYLPPESRWSYIMENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 116 Query: 128 E-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + L + + I D + ++ IYE+ + +F +G +F TP+ +V+L Sbjct: 117 QLDTAKLASLLDEINRINT--DDKENDIIGRIYEYFLSKFALAEGKGKGEFYTPKCIVNL 174 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L D LYDP CG+GG +M V H + +GQE Sbjct: 175 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAH---HGNKKQVSIYGQE 220 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T+ +C + IR + ++ + +T + D + Y ++NPPF + Sbjct: 221 YTNTTYKLCKMNLAIRGISANLGETAA------NTFTNDQHKDLKADYIMANPPFNQ--- 271 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 A E++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 272 ---KAWRAENELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 324 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 + E +IR+ L+EN+L+EAI+ LP +LF+ T+I+ LWIL+ K Sbjct: 325 SDDGT---ELKIRKQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEQNGQL 381 Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471 +R ++ ++ + K + D R ++ +Y + + + + Sbjct: 382 KRYRDREREILFMDLRQMGGPYEK---KYIELTDKDRAKVTSVYHNWQQEGYEETYENIP 438 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F Y V + F L + ++ ++ + ++Q+ Sbjct: 439 EFCYSASFVEVAEK-GFTLVPSRYIEFVNRDENIDFDAKMKTLQAELKELLVQEEQSKAD 497 Query: 532 AESFVKESIKSNEA 545 + KE E Sbjct: 498 LLAVFKELGYEIEL 511 >gi|322392309|ref|ZP_08065770.1| type I restriction-modification system DNA-methyltransferase [Streptococcus peroris ATCC 700780] gi|321144844|gb|EFX40244.1| type I restriction-modification system DNA-methyltransferase [Streptococcus peroris ATCC 700780] Length = 533 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 127/572 (22%), Positives = 216/572 (37%), Gaps = 75/572 (13%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51 E T ++ SL +W +A+ L D+ +L + L + + Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGTDS 61 Query: 52 RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 E Y + E V V ++ + + + L + LE F Sbjct: 62 LEDALEVYRNYYEDAETHEDLVSVMNDELNYIIKPDLTFTALVARVNEGTFQLEDLAQGF 121 Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 SD+ +FED D S +L ++ + + K + +++ ++ Sbjct: 122 RDIEQSDDLYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREN------QEGFTIYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P +V GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y SRE KF + Y + P R ++ + L ++ + Sbjct: 440 LEAYKSREEIDKFVHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINETNKA 498 Query: 512 QSFWLDILKPMMQQI-YPYGWAESFVKESIKS 542 L M+ Q+ A++ +KE +K+ Sbjct: 499 IESQTASLLEMLGQLHGTTPEADAELKEFLKN 530 >gi|269793144|ref|YP_003318048.1| type I restriction-modification system, M subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100779|gb|ACZ19766.1| type I restriction-modification system, M subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 522 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 119/559 (21%), Positives = 212/559 (37%), Gaps = 77/559 (13%) Query: 1 MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---------ALE 49 M A L IW A DL G DF + +L R + E Sbjct: 1 MENNRKEQERAELHRTIWNMANDLRGSVDGWDFKQYVLGMLFYRYISENITAYINAGEWE 60 Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIAS-F 107 + L+ + E VK G F+ + + + NL + F Sbjct: 61 AGNTEFDYAKLSDEEAEQAREDLVKTKG--FFILPSELFENVRARAKDDENLNETLEQIF 118 Query: 108 S------------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DT 149 S DN K +F+D D +S +L ++ L K+ + ++L Sbjct: 119 SNIEASAQGTESEDNFKGLFDDIDVNS--NKLGNTVAKRNEKLVKLLNSVGEMKLGDYKD 176 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + YE L+ + S + ++ TP++V L T L + + K + Sbjct: 177 NTIDAFGDAYEFLMGMYASNAGKSGGEYYTPQEVSELLTHLTIVGKTEVNK--------V 228 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDP CG+G L + GQE+ T+ +C M + ++ D Sbjct: 229 YDPACGSGSLLLKFAKILGKENVRQG------FFGQEINITTYNLCRINMFLHDIDYDKF 282 Query: 270 RDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +I G TL+ + F +SNPP+ KW+ D D + RF P Sbjct: 283 -----DIALGDTLTDPQHWDDEPFEAIVSNPPYSIKWKGDSDPI-----LINDPRFSPAG 332 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 L S + F+MH + L G AAIV ++ G A E +IR++L++N+ Sbjct: 333 VLAPKSKADLAFIMHSLSWLAT----NGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNY 385 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+ I+ LP +LF+ T+IAT + +L K++ I+A+ + + N + Sbjct: 386 IDCIIQLPDNLFYGTSIATCIMVLKKSKSDNST---LFIDASKEFVKVTN----NNKLTQ 438 Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + + IL+ Y+ R++ + F+R++ + + + + + + + Sbjct: 439 ENIKNILNTYIDRKDIEHFARLVPNSEIAEQDYNLSVATYVEQEDTREKIDIVALNAEIE 498 Query: 506 KLSPLHQSFWLDILKPMMQ 524 K+ Q +I K + + Sbjct: 499 KIVARQQILREEIDKIIAE 517 >gi|257090571|ref|ZP_05584932.1| type I restriction-modification system M subunit [Enterococcus faecalis CH188] gi|312905100|ref|ZP_07764221.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0635] gi|256999383|gb|EEU85903.1| type I restriction-modification system M subunit [Enterococcus faecalis CH188] gi|310631490|gb|EFQ14773.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0635] gi|315579072|gb|EFU91263.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0630] Length = 530 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 102/544 (18%), Positives = 210/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK- 112 + + Y+ S L + + + + + Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYSISPEYLFNVLADQAKQAIFQLNDLNKAFVQL 122 Query: 113 --------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 SSTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|313892755|ref|ZP_07826336.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412] gi|313442686|gb|EFR61097.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412] Length = 332 Score = 293 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 31/331 (9%) Query: 9 ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 S+ +FIW A+D L + + VILP T++RRL+ LE T+ V E + I Sbjct: 7 NSIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEHTKPVVLEMKKKMDEAGI 66 Query: 68 --DLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + AG +F N S + L L + + E+Y+ FS N + I F F Sbjct: 67 TNQWPALCNAAGQAFCNASPFVLKDLTSRVKKQTLKADFEAYLDGFSPNVQEILAKFQFR 126 Query: 122 STIARLEKAGLLYKICKNF----------------SGIELHPDTVPDRVMSNIYEHLIRR 165 + I + +A +L + + F S + + + M ++E L+R+ Sbjct: 127 NQIDTMIEADILGAVIEKFVSPTINLSPKPIYTDDSKNVIKLPALDNHAMGTVFEELVRK 186 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F +E A + TPRDVV L L+ P K+ + YD CGTGG LT A + Sbjct: 187 FNEANNEEAGEHWTPRDVVDLMADLIFIPIADEIKD---ATYSCYDGACGTGGMLTVAQD 243 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + GQE++PET+A+C A ML++ D +++I GSTLS D Sbjct: 244 RLTSLAKRRSKEVSIHLFGQEVQPETYAICKADMLLKG-----DGDQAEHIAYGSTLSAD 298 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 ++F + L+NPP+GK W+ D + ++ Sbjct: 299 GNASRQFDFMLANPPYGKSWKTDAEKWVEKR 329 >gi|312952954|ref|ZP_07771810.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0102] gi|310629095|gb|EFQ12378.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0102] Length = 531 Score = 293 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 105/544 (19%), Positives = 211/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y S L + + + L +F Sbjct: 63 QTILYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|219871811|ref|YP_002476186.1| type I restriction-modification system, M subunit [Haemophilus parasuis SH0165] gi|219692015|gb|ACL33238.1| type I restriction-modification system, M subunit [Haemophilus parasuis SH0165] Length = 537 Score = 293 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 126/577 (21%), Positives = 212/577 (36%), Gaps = 88/577 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58 MT+ L +W A+ L G DF +L F LR L E + Sbjct: 1 MTQ--EQLNQLGKTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGRDY 58 Query: 59 ---------------YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRN 98 Y D E ++ + S L+ + ST + Sbjct: 59 PQLSNDDKRTPLAVWYQENADFTADFEKQMRRKVHYVIKPEYLWGSIAELARVQSTELLS 118 Query: 99 NLE---SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 L+ YI SF +F + + +S +L E+ L +I K + + Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNS--EKLGKSYTERNNKLAEIVKRIAE-GISEF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F S + A +F TP+ V + + ++ + + Sbjct: 176 SADSDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKRKKLDS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + +A+ G H +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRHQMAENGGHIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G +L D F ++NPPF +W+ +D Sbjct: 288 --DTEFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDPKEDLAN------- 338 Query: 321 LGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF G GL S FL+H + L + G AI+L LF G A E +IR+ Sbjct: 339 DFRFNGYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRK 391 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL + I+A++ LP +LF+ T I + +L K E + INA D + GK Sbjct: 392 KLLNDGNIDAVIGLPANLFYSTGIPVCILVLKKCKKE---DDILFINAADAFEK----GK 444 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARL 498 ++ + D+ +I++ Y R+ + GY +RI V + L+ Sbjct: 445 RQNRLTDEHIAKIIEHYQYRKETQ----------GYAKRISVQEIEDNDYNLNIARYVNN 494 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 A L+ HQ+ K + + + Sbjct: 495 TAVEEEIDLAANHQALMDLDAKIKVATAKHNVFLKEL 531 >gi|315169213|gb|EFU13230.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX1341] gi|315171542|gb|EFU15559.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX1342] Length = 529 Score = 293 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + ++ S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLEDEDSRQDLIDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|69245865|ref|ZP_00603682.1| Type I restriction-modification system M subunit [Enterococcus faecium DO] gi|257879183|ref|ZP_05658836.1| type I restriction-modification system M subunit [Enterococcus faecium 1,230,933] gi|257881998|ref|ZP_05661651.1| type I restriction-modification system M subunit [Enterococcus faecium 1,231,502] gi|257890013|ref|ZP_05669666.1| type I restriction-modification system M subunit [Enterococcus faecium 1,231,410] gi|260560170|ref|ZP_05832347.1| type I restriction-modification system M subunit [Enterococcus faecium C68] gi|293560248|ref|ZP_06676747.1| type I restriction-modification system, M subunit [Enterococcus faecium E1162] gi|294620836|ref|ZP_06700040.1| type I restriction-modification system, M subunit [Enterococcus faecium U0317] gi|314947719|ref|ZP_07851126.1| type I restriction-modification system, M subunit [Enterococcus faecium TX0082] gi|68195567|gb|EAN10009.1| Type I restriction-modification system M subunit [Enterococcus faecium DO] gi|257813411|gb|EEV42169.1| type I restriction-modification system M subunit [Enterococcus faecium 1,230,933] gi|257817656|gb|EEV44984.1| type I restriction-modification system M subunit [Enterococcus faecium 1,231,502] gi|257826373|gb|EEV52999.1| type I restriction-modification system M subunit [Enterococcus faecium 1,231,410] gi|260073737|gb|EEW62062.1| type I restriction-modification system M subunit [Enterococcus faecium C68] gi|291599621|gb|EFF30634.1| type I restriction-modification system, M subunit [Enterococcus faecium U0317] gi|291605792|gb|EFF35227.1| type I restriction-modification system, M subunit [Enterococcus faecium E1162] gi|313645699|gb|EFS10279.1| type I restriction-modification system, M subunit [Enterococcus faecium TX0082] Length = 530 Score = 293 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 105/544 (19%), Positives = 212/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y S L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + ++ + P + ++ + + +K+ Q ++ Sbjct: 444 KDVEKYAHLANFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|46019874|emb|CAE52400.1| putative restriction-modification enzyme type I M subunit [Streptococcus thermophilus] Length = 537 Score = 293 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 105/554 (18%), Positives = 206/554 (37%), Gaps = 71/554 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M A SL +W +A+ L G +++ +L + L + R ++ Sbjct: 1 MEGRIIMATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSD--KQLREVYEQENG 58 Query: 61 AFG---------------GSNIDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLES 102 + + Y L + + N NL Sbjct: 59 KTDTFPERSTLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTD 118 Query: 103 YIASFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 A F++ + +F D D +ST ++ + ++ + I+L Sbjct: 119 LQAGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD-- 176 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V+ + YE+LI F + + A +F TP+ V + + + ++ + +YDP Sbjct: 177 VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------VPFHIYDPA 230 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G + + ++ P + HGQEL T + +++ ++ + Sbjct: 231 MGSGSLMLNIRRYLI-------HPNQVHYHGQELNTTTFNLARMNLILHGVDKERM---- 279 Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 N+ G TL D + + + + + NPP+ KW + RFG L Sbjct: 280 -NLNNGDTLDADWPSEEPYQFDSVVMNPPYSVKWSAADKFLSDPR----FERFG-KLAPK 333 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G IVL LF G A E IR+ LLE I+A++ Sbjct: 334 SKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVI 386 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP ++FF T+I T + IL ++ V I+A+ + +N + ++ D+ + Sbjct: 387 GLPANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDK 439 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+ Y RE+ + ++ + + + P + ++ + +E + K++ Sbjct: 440 IVSTYKKREDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTILLKINEE 499 Query: 511 HQSFWLDILKPMMQ 524 +L + Sbjct: 500 LVQQEQVLLSLIDD 513 >gi|56476900|ref|YP_158489.1| Type I site-specific deoxyribonuclease, methylase subunit [Aromatoleum aromaticum EbN1] gi|56312943|emb|CAI07588.1| Type I site-specific deoxyribonuclease,methylase subunit [Aromatoleum aromaticum EbN1] Length = 543 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 119/578 (20%), Positives = 211/578 (36%), Gaps = 91/578 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 MTE L +W A+ L G DF +L F LR L E + + Y Sbjct: 1 MTE--QDQKQLGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEQAAKKELGADY 58 Query: 60 LA-------------------FGGSNIDLESFVKVAGYSFYNTSEY-------SLSTLGS 93 ++ E ++ Y L+ S Sbjct: 59 PDVAPGVMEQTDSTTPLQIWYEENADDVAEFEKQMRRKVHYVIEPDYLWGSIVHLAKTES 118 Query: 94 TNTRNNLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143 + + L+ YI SF N + +F + + +S +L ++ L I + Sbjct: 119 SKLLDTLQKGFKYIEERSFQSNFQGLFSEINLAS--DKLGRKYEDRNDKLCSIISELAR- 175 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + + + + YE+LI +F + + A +F TP+ + + +A++ + Sbjct: 176 GMSLFSTDTDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKEGPR 235 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + ++D CG+G L + + + G +GQE T+ + ML+ Sbjct: 236 KKLENVFDFACGSGSLLLNVRHRMKKAGGTIGK-----IYGQEYNVTTYNLARMNMLLHG 290 Query: 264 LESDPRRDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 ++ D I G TL+ + +F ++NPPF +W+ E Sbjct: 291 VK-----DTEFEIYHGDTLANTWDSLRETNPAKKPQFDAVVANPPFSYRWDLGDAMSE-- 343 Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 RF G+ S FL+H + L+ G AI+L LF G A E Sbjct: 344 -----DMRFKNHGVAPKSAADFAFLLHGLHYLKDD----GVMAIILPHGVLFRGGA---E 391 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 IRR LL + I+ +V LP +LF+ T I + +L K V INA + + Sbjct: 392 ERIRRKLLIDGHIDTVVGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK- 447 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 GK++ ++D+ ++I+D Y R + RR+ + + F L+ + Sbjct: 448 ---GKRQNQLSDEHIQRIIDTYQQR-----PSDIPRYA---RRVGMEEIEKNDFNLNISR 496 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 L +HQ +DI K +++ + Sbjct: 497 YVSTAVAEEEVDLKAVHQQ-LVDIEKQIVKAKDKHNAF 533 >gi|258593067|emb|CBE69378.1| N-6 DNA methylase [NC10 bacterium 'Dutch sediment'] Length = 640 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 112/560 (20%), Positives = 209/560 (37%), Gaps = 81/560 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 S+ +WK A + G+ F ILP ++RL E + + E Y G Sbjct: 122 TKSMEGLLWKAACSIRGEKDAPKFKDYILPLVFIKRLSDVFEDEMAGLTETYE--GNEER 179 Query: 68 DLESFVKVAGY-SFYNTSEYSL------------STLGSTNTRNNLES---YIASFSDNA 111 G FY + + L + IA + + Sbjct: 180 ARTVLEADHGVVRFYIPPQATWPVVSSRQMFEWPEGKRPKTLGEQLTTTVRAIARLNPSL 239 Query: 112 KAIFEDFDFSST--IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFG 167 + + + D++ R G L ++ + S V + YE+L+R+F Sbjct: 240 QGVIDIVDYNEIRNGEREISDGALSRLIELLSDPRYRMGLHDVEPDFLGRAYEYLLRKFA 299 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + A +F TP++V L L+ P + DP CG+GG L + Sbjct: 300 EGQGQSAGEFFTPKEVGWLIAYLM----------RPKQGEEVNDPCCGSGGLLIKCELVL 349 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G +I L +GQEL + A+ M++ +E + I +G++++ F Sbjct: 350 K--GQEEEIARPLRLYGQELTGSSFAIARMNMVLHDMEGE--------IVRGNSMANPKF 399 Query: 288 TG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMH 341 +RF ++NP + + + ++N RF G S +L H Sbjct: 400 LDGSSLRRFDIVVTNPMWNQD-----NFDPASYENDPFERFVERGGFAPASSADWAWLQH 454 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLF 398 + L GRAA+V+ + G GE++ IRRW ++ D IE ++ LP +LF Sbjct: 455 VHASLNDA----GRAAVVIDTGAASRGSGSQGENKEKTIRRWFVDRDAIEGVILLPDNLF 510 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T A + +L+ +K + R+G+V LINA+ + G+ + I D ++I + + + Sbjct: 511 YNTTAAGIIILLNRQKAKGRQGRVILINASTEFEK----GRPKNFIPDASVKKIAEAFHA 566 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + + + + + L + +P + Sbjct: 567 GKDVERFVKVAS---------IEEIAKNDYNLSPSRY--------IETTAPTEHRDIQTV 609 Query: 519 LKPMMQQIYPYGWAESFVKE 538 L + + +S +KE Sbjct: 610 LDDLSKLDAEVKQLDSELKE 629 >gi|313887163|ref|ZP_07820859.1| putative type I restriction-modification system, M subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312923392|gb|EFR34205.1| putative type I restriction-modification system, M subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 525 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 99/563 (17%), Positives = 208/563 (36%), Gaps = 61/563 (10%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + G S+ +W++A L G + +++ V+L L+ R+ + K Sbjct: 5 MAKKQGKKEKSIEESLWESANKLRGSVEPSEYKHVVLSLIFLKYANDCFIERRAQLIAK- 63 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 G E+ A FY T S L + ++ I + + + E Sbjct: 64 ---GEERYVDEAAFYTATNVFYLTEHSRWSYLMEHAKQPDIAIKIDAALAEVERVNETLK 120 Query: 120 ---FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 S+ + L L + + I+ D ++ +YE+ I +F +G Sbjct: 121 GALPSNYYSSLGLDQTKLSALLDEINKIDTLKDR-EHDLIGRVYEYFISKFAIAEGKGKG 179 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 ++ TP+ +V+L ++ + +YDP CG+GG +M + H Sbjct: 180 EYYTPKSIVNLIAEMIQPYEG-----------KIYDPCCGSGGMFVQSMKFIEAH---HG 225 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + +GQE T+ + + IR + S+ + T D + + Sbjct: 226 NKKNISVYGQEYTNTTYKLAKMNLAIRGIASNLGAVAA------DTFHNDQHKDLKADFI 279 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF + + +++ + R+ G +P S+ + +++++ +KL + G Sbjct: 280 MANPPFN------QKSWRAKNELVDDPRWAGYEVPPTSNANYGWILNIVSKL----SVNG 329 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 A +L++ L E IR+ L+EN L+EAIV LP ++F+ T+I+ LWIL+ K Sbjct: 330 VAGFLLANGAL---SGEGTEQAIRKQLIENKLVEAIVILPRNMFYSTDISVTLWILNRNK 386 Query: 415 TE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +R KV ++ K + +Q +I + + + + Sbjct: 387 KARTINQNGALVKYRDRERKVLFMDLRQSGEPFEK---KYIQFSPEQIAEIANNFHTWQQ 443 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 D + Y + + L + + ++++ Sbjct: 444 EGGKPYQDVPEYCYSA-TIEEIAETGYSLVPSKYIEFVDRDEGIDYNERLHELNAELMQL 502 Query: 522 MMQQIYPYGWAESFVKESIKSNE 544 + ++ + + + K Sbjct: 503 LEEEAASRKELITLMSKLTKGEA 525 >gi|229042277|ref|ZP_04190029.1| Type I restriction-modification system, M subunit [Bacillus cereus AH676] gi|228727068|gb|EEL78273.1| Type I restriction-modification system, M subunit [Bacillus cereus AH676] Length = 530 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 105/496 (21%), Positives = 200/496 (40%), Gaps = 72/496 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY---- 59 A L + ++ A++L +++ +L + L L E+Y Sbjct: 1 MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTPE 60 Query: 60 -------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111 A +I + + Y+ Y + L + +N + + + Sbjct: 61 KQTQLYREALADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQ--LNDLNKAF 118 Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158 + +D F+ ++ K+ L ++ K + I++ V+ + Sbjct: 119 IGLSTKYDQFNGLFDDMDLKSKKLGSDDQQRNITVTEVLKKLNDIDVI--GHNGDVIGDA 176 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI +F SE + A +F TP +V + + + + +++DPT G+G Sbjct: 177 YEFLIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + + N++ P + HGQEL T+ + +++ ++ + ++ Sbjct: 231 LMLNIRNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMS-----LRN 278 Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G TL+KD T + + + L NPP+ KW D ++ R+G L S Sbjct: 279 GDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADF 333 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L+ G AIVL LF G A E IR+ LLE+ I+A++ +P + Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T+I T + IL +T V I+A++ +T GK + ++ + +I++ Y Sbjct: 387 LFFGTSIPTTVIILKKNRTTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETY 439 Query: 457 VSRENGKFSRMLDYRT 472 RE+ + + Sbjct: 440 KKREDVEKYAYVATFD 455 >gi|322388270|ref|ZP_08061874.1| type I restriction-modification system DNA-methyltransferase [Streptococcus infantis ATCC 700779] gi|321140942|gb|EFX36443.1| type I restriction-modification system DNA-methyltransferase [Streptococcus infantis ATCC 700779] Length = 533 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 122/556 (21%), Positives = 208/556 (37%), Gaps = 74/556 (13%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51 E T ++ SL +W +A+ L D+ +L + L + + Sbjct: 2 ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGTDS 61 Query: 52 RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 E Y + E V V ++ + + + L + LE F Sbjct: 62 LEDALEVYRNYYEDADTHEDLVSVMNDELNYIIKPDLTFTALVARVNEGTFQLEDLAQGF 121 Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 SD+ +FED D S +L ++ + + K + +++ ++ Sbjct: 122 RDIEQSDDLYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F ++ + A +F TP+ V L T + + T+YD T G+ Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QEGFTIYDATMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P +V GQEL T+ + M++ + + + + Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279 Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 TL +D F L NPP+ KW + RF P L S Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN-------DPRFSPFGKLAPQS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++FF T+I T + IL +T V I+A+ + GK + I+ D +I Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439 Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 L+ Y S E KF+ + Y + P R ++ + L ++ + Sbjct: 440 LEAYKSHEEMDKFAHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINQTNQA 498 Query: 512 QSFWLDILKPMMQQIY 527 L M+ Q++ Sbjct: 499 IESQTASLLEMLGQLH 514 >gi|57505320|ref|ZP_00371249.1| type I restriction-modification system, M subunit [Campylobacter upsaliensis RM3195] gi|57016456|gb|EAL53241.1| type I restriction-modification system, M subunit [Campylobacter upsaliensis RM3195] Length = 533 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 119/509 (23%), Positives = 203/509 (39%), Gaps = 80/509 (15%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREK--- 58 +L + IWK A L G+ DF +L R + L + + Sbjct: 9 QAQRDALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISSTGGR 68 Query: 59 --------YLAFGGSNIDL-----ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL 100 Y +ID+ E+ + G+ Y S+ + L + TN L Sbjct: 69 GGGGEPNSYENLSDKDIDVNEKSREAIIDAKGFLIY-PSQLFCNVLKAHAQDTTNLNQTL 127 Query: 101 ESYIASFSDNA---------KAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHP 147 + A + K +F D D +S+ L++ LY++ + + ++LH Sbjct: 128 SNVFAQIEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEKLYQVMQEIATLDLHY 187 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + YE+L+R + + + +F TP++V HL L+ ++ K Sbjct: 188 NDNAIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSHLLARLVSYGKQSVNK------- 240 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP CG+G L + GQE+ P ++ +C ML+ + Sbjct: 241 -VYDPACGSGSLLLQFAKVLGIDNIKQG------FFGQEINPTSYNLCRINMLLHDI--- 290 Query: 268 PRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + +I G TL + + F +SNPP+ KW D + K RF P Sbjct: 291 --GFENFDIALGDTLLEPKHADDEPFDAIVSNPPYSTKWIGD-----DDLKLINDPRFAP 343 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S + F MH+ + L G AIV L+ G E +IR++L++ Sbjct: 344 AGVLAPKSYADLAFTMHMLSWLSPS----GTCAIVEFPGVLYRGGK---EKQIRKYLIDQ 396 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+ I+ LP +LFF TNIAT + +L K I+A++ +T I K+ I+ Sbjct: 397 NFIDTIIQLPENLFFGTNIATSIIVLKKNKQSVAT---LFIDASEQFTKIT----KKNIL 449 Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRT 472 I++ Y RE+ + FSR++ Sbjct: 450 ESTHINTIVEAYAKREDIEHFSRLVSLEE 478 >gi|145629353|ref|ZP_01785152.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] gi|144978856|gb|EDJ88579.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] Length = 586 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 96/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------------A 47 L +W +A+ L ++ ++L L+ + Sbjct: 51 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQKKIQAELTDPENPLY 110 Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 + T E+Y + ++ + A F+ + L + N + + Sbjct: 111 FDRTFDDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 168 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 FS AK I + FD +L+ L + FS T Sbjct: 169 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 228 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 229 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 277 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 278 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 334 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 335 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 381 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 382 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 435 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 436 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 490 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I D + + S + + + + F+L E + Sbjct: 491 TADDIAKIADTLHAWQT---SDGYEDQAAFCKSTTLEEIAGNDFVLTPGRYVGTAEQEDD 547 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 548 GVPFAEKMQNLTALLKEQFAKSTELEAEIKKNL 580 >gi|253699076|ref|YP_003020265.1| type I restriction-modification system, M subunit [Geobacter sp. M21] gi|251773926|gb|ACT16507.1| type I restriction-modification system, M subunit [Geobacter sp. M21] Length = 827 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 92/470 (19%), Positives = 180/470 (38%), Gaps = 61/470 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + ++L G + + +L ++ + + Sbjct: 1 MAVKKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISD--------------KYA 46 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 ++ + V G SF + + + + + ++ ++ F DFD Sbjct: 47 DADCFAPAVVIPPGASFKDMIVLKGKSDIGEKINTQVIAPLVKSNERRLGRSDFPDFDDP 106 Query: 122 STIAR-LEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGAEDF 177 + + K L + F L D ++ + YE+L+R F +E + F Sbjct: 107 NRLGEGQAKVERLTNLISIFENPALDFSKNRAEHDDILGDAYEYLMRHFATESGKSKGQF 166 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V + ++ + + YDPTCG+G L + Sbjct: 167 YTPSEVSRVVAKVIGISRANIV-----ASTSAYDPTCGSGSLLLKVAE---------EAG 212 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FH 293 + GQE + T + M++ + NI G+TL+ F + + Sbjct: 213 KHITLEGQEKDVTTAGLARMNMILH-------HFPTANILSGNTLAAPKFKDGKQLRTYD 265 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y ++NPPF K N + RF G+P G +L+H+ ++ Sbjct: 266 YVVANPPFSDKTWSTGLLPA----NDDFERFAWGVPPTKQGDYAYLLHIIRSMKST---- 317 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+AA +L LF G A E+ IR+ L+ + ++ I+ LP +LF+ T I + +L Sbjct: 318 GKAACILPHGVLFRGNA---EATIRKQLVRSGYLKGIIGLPANLFYGTGIPACILVLDKE 374 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 R+G V +I+A+ + +G K R + D +I+D + +++ Sbjct: 375 NAAGRKG-VFMIDASKGFI---KDGNKNR-LRDQDIHKIVDTFARQDDSD 419 >gi|2865243|gb|AAC15897.1| type IC modification subunit [Lactococcus lactis] Length = 531 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 106/485 (21%), Positives = 184/485 (37%), Gaps = 74/485 (15%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52 L +W +A+ L G +++ +L + L E Sbjct: 5 LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + E Y I E+ GY + + + N NL A F++ + Sbjct: 65 AGFMEWYEEDKDDLI--ENIQPKQGYFIQPDQLFYSYRIKADNYEFNLTDLQAGFNELER 122 Query: 113 ------AIFEDFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVPDRVMSNIYEH 161 +F D D +ST +L LL + + I+L V+ + YE+ Sbjct: 123 QGEEFSGLFADIDLNST--KLGSNALLRNVTITEVLRALDEIDLFEHNGD--VIGDAYEY 178 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI F S + A +F TP+ V + + + + +YDP G+G + Sbjct: 179 LIGEFASSAGKKAGEFYTPQAVSKIMSEITSIGQE------TRAPFHIYDPAMGSGSLML 232 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + ++ P + HGQEL T + +++ ++ + N+ G T Sbjct: 233 NIRRYL-------NNPDQVHYHGQELNTTTFNLARMNLILHGIDKERM-----NLNNGDT 280 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L D + + + + NPP+ KW + RFG L S FL Sbjct: 281 LDADWPSEEPYQFDSVCMNPPYSAKWSAADQFLSDPR----FERFG-KLAPKSKADFAFL 335 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G IVL LF G A E IR+ LLE I+A++ LP ++FF Sbjct: 336 LHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFF 388 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ I+ R Sbjct: 389 GTSIPTTVIILKRNRSRR---DVLFIDASQDFEKRKN----QNVLLDEHIDKIVSIHKKR 441 Query: 460 ENGKF 464 E+ + Sbjct: 442 EDIER 446 >gi|329116119|ref|ZP_08244836.1| type I restriction-modification system, M subunit [Streptococcus parauberis NCFD 2020] gi|326906524|gb|EGE53438.1| type I restriction-modification system, M subunit [Streptococcus parauberis NCFD 2020] Length = 531 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 100/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52 L +W +A+ L G +++ +L + L E Sbjct: 5 LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64 Query: 53 SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 + E Y I+ + + FY+ + + N NL A F+ Sbjct: 65 AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118 Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + + +F D D +ST ++ + ++ + I+L V+ + Y Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F + + A +F TP+ V + + + ++ +YDP G+G Sbjct: 177 EYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ + + HGQEL T + +++ ++ + N+ G Sbjct: 231 MLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL D + + + + + NPP+ KW + RFG L S Sbjct: 279 DTLDADWPSEEPYQFDSVIMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++ Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ Y Sbjct: 387 FFGTSIPTTIIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439 Query: 458 SRENGKF 464 RE+ + Sbjct: 440 KREDIER 446 >gi|315148961|gb|EFT92977.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX4244] Length = 529 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + ++ S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|315172562|gb|EFU16579.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX1346] Length = 537 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 102/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52 L +W +A+ L G +++ +L + L E Sbjct: 11 LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 70 Query: 53 SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 + E Y I+ + + FY+ + + N NL A F+ Sbjct: 71 AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 124 Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + + +F D D +ST ++ + ++ + I+L V+ + Y Sbjct: 125 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 182 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F S + A +F TP+ V + + + + +YDP G+G Sbjct: 183 EYLIGEFASSAGKKAGEFYTPQAVSKIMSEITSIGQE------TRAPFHIYDPAMGSGSL 236 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ + P + HGQEL T + +++ ++ + N+ G Sbjct: 237 MLNIRRYLTN-------PDQVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 284 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL D + + + + + NPP+ KW + RFG L S Sbjct: 285 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 339 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++ Sbjct: 340 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 392 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ Y Sbjct: 393 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 445 Query: 458 SRENGKF 464 RE+ + Sbjct: 446 KREDIER 452 >gi|73748045|ref|YP_307284.1| putative type I restriction-modification system methylation subunit [Dehalococcoides sp. CBDB1] gi|73659761|emb|CAI82368.1| putative type I restriction-modification system methylation subunit [Dehalococcoides sp. CBDB1] Length = 645 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 111/537 (20%), Positives = 201/537 (37%), Gaps = 68/537 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + A L F+ K A L G+ H++F + +R+ E+ Sbjct: 14 TQAELDAFLEKAANILRGNVDHSEFRGYVFALLFFKRISDV-------YIEEVRKLTAQL 66 Query: 67 IDLESFVKVAGYSFYNT--SEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFED-F 118 D ++F S + ++ S N + + + I Sbjct: 67 GDETLAKDPKMHNFVVPDGSLWDIAARQSRNQVGTTLNEAMIAIERANQPKFDGILTSGV 126 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF+ +L + L + +FS V D V+ N YE+LIR F S + + +F Sbjct: 127 DFNDA-EKLPR-DKLINLINHFSSQIFDRAHVTDDVLGNAYEYLIRNFASRAGKSSGEFY 184 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP++V +L + ++ P +++ D G+GG L N+V P Sbjct: 185 TPKEVAYLMSEIV----------EPQPGQSICDWASGSGGLLLQCRNYVTRQCKD---PD 231 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFH 293 L+ + QE T+ + M++ ++S + +L L +F Sbjct: 232 RLLLYAQESNLSTYNISRINMILHGVKSWEH-------RHQDSLRNPLHVDDGKKLLKFD 284 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + NPPF + D GRFG G+P ++G +L H+ L+ Sbjct: 285 RIVMNPPFSLEDWGYDDFQGG----DPFGRFGYGMPPRNNGDYAWLEHVLKSLKDT---- 336 Query: 354 GRAAIVLSSSPLFNGRAGSGESE------------IRRWLLENDLIEAIVALPTDLFFRT 401 G+A +V+S LF G+ E + IR ++ D IE ++ LP+ LF+ Sbjct: 337 GKAIVVMSQGVLFRGQPEQTEEDDGRNQSADAEYVIREGFIKADAIECVIVLPSKLFYGN 396 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + L I++ K ER+ K+ +I A+ + + + I+ +IL + + + Sbjct: 397 TVPGCLIIMNKNKPPERKNKILMIWASRNFQN----ANPQNILRPSDLMRILVPWRAFGD 452 Query: 462 GKFSRMLDY--RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 +R L + ++ R R+ I D + +LS L S W Sbjct: 453 LDLARRLVSIHEEKLVQEEELERQRRLKDIEDAYAPILEPLETLTLELSRLETSNWQ 509 >gi|294788779|ref|ZP_06754020.1| type I restriction-modification system, M subunit [Simonsiella muelleri ATCC 29453] gi|294483261|gb|EFG30947.1| type I restriction-modification system, M subunit [Simonsiella muelleri ATCC 29453] Length = 547 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 95/572 (16%), Positives = 193/572 (33%), Gaps = 85/572 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59 L +W +A+ L ++ ++L L+ + + + ++ + Y Sbjct: 12 LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSNPENPLY 71 Query: 60 LAFGGSNIDLESFVK-----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYI---A 105 L + D E A F+ + + + + N+ + + Sbjct: 72 LDRAFYDTDEEYQEALTIELENRDYYTADNVFWVPQQARWDEIKAVSIL-NIGAELPWGG 130 Query: 106 SFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP-- 151 FS AK I + FD +L+ L + FS T Sbjct: 131 KFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGE 190 Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 191 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 239 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP G+GGF + + + +GQE P T + M IR ++ Sbjct: 240 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 296 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 D + + + ++ K+ + ++NPPF + R+ Sbjct: 297 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 343 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ D Sbjct: 344 YGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 397 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 L+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 398 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 452 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504 D +I + + + S + + + + F+L E + Sbjct: 453 TDDIAKIANTLHTWQT---SDGYEDQATFCKSATLEEIADNDFVLTPGRYVGTAEQEDDG 509 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 510 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 541 >gi|327404778|ref|YP_004345616.1| adenine-specific DNA-methyltransferase [Fluviicola taffensis DSM 16823] gi|327320286|gb|AEA44778.1| Site-specific DNA-methyltransferase (adenine-specific) [Fluviicola taffensis DSM 16823] Length = 521 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 107/546 (19%), Positives = 214/546 (39%), Gaps = 71/546 (13%) Query: 1 MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + T + S+ +W +A L G + +++ V+L L+ E R + + Sbjct: 1 MAKQTAKNTKSIEETLWDSANKLRGTVESSEYKHVVLALIFLKFTSDKFEERRQELVAE- 59 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAK 112 G F+ E S + + +N++ I + + K Sbjct: 60 ---GKDKYLEMPEFYNMKNVFFLAEESRWSYIIANAKQNDISLKIDTALHTVEKNNASLK 116 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 D FS + K L + + I+ D D + +YE+ + +F + Sbjct: 117 GALPDNYFSRLNMDVSK---LAALLDTINNIDTLKDKQQDI-VGRVYEYFLSKFALAEGK 172 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 G +F TP+ +V+L ++ +YDP CG+GG +M + Sbjct: 173 GKGEFYTPKSIVNLIAEMI-----------EPYKGVIYDPACGSGGMFVQSMKFIQSHHG 221 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + K + +GQE T+ + + IR + ++ + T +KD + Sbjct: 222 NTK---DISIYGQEYTNTTYKLAKMNLAIRGISANLGAVAA------DTFAKDQHPDLKA 272 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351 + ++NPPF + + + R+ G LP S+ + +++++A+KL + Sbjct: 273 DFIMANPPFN------QKDWRASDELTDDPRWKGYDLPPTSNANYAWILNMASKL----S 322 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A +L++ L G E +IR+ L+EN ++EA+V LP +F+ T+I+ LWIL+ Sbjct: 323 ENGVAGFILANGALSGGGE---EYKIRKKLIENGVVEAVVILPRSMFYTTDISVTLWILN 379 Query: 412 NRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 N KTE R+ ++ ++ ++ K ++D ++I Y + Sbjct: 380 NNKTERVVKHPDETRNYRNRKDEILFMDLREIGEPFEK---KFTQFSEDHIKEIAGTYHT 436 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL---EADITWRKLSPLHQSFW 515 + K S D + Y + + L + + +I + Q+ + Sbjct: 437 WQQ-KNSNYKDIPEYCYSA-TLENVKSKDYSLVPSKYIEFVNRDENIDFDDKMKSLQAEF 494 Query: 516 LDILKP 521 ++LK Sbjct: 495 TELLKA 500 >gi|227517373|ref|ZP_03947422.1| possible site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX0104] gi|227075243|gb|EEI13206.1| possible site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX0104] Length = 529 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 196/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + + S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLADEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|222152467|ref|YP_002561642.1| type I restriction-modification system M protein [Streptococcus uberis 0140J] gi|222113278|emb|CAR40812.1| type I restriction-modification system M protein [Streptococcus uberis 0140J] Length = 516 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 119/493 (24%), Positives = 199/493 (40%), Gaps = 70/493 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------- 51 M+E L + IWK A+D+ G DF + IL R + + Sbjct: 1 MSE-QAQRQELHSKIWKIADDVRGAVDGWDFKQYILGILFYRFISENFKNYMEAGDPNIN 59 Query: 52 RSAVREKY--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES------- 102 V E + + + + F N + S + N +L++ Sbjct: 60 YENVPESLITDDIKDDAVKTKGYFIMPNQLFSNIVK---SARTNDNLNTDLKAIFDAIQA 116 Query: 103 -YIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRV 154 I S+N K +F+D D +T RL EK L I + + + H + + Sbjct: 117 SAIGYESENDIKGLFDDVD--TTSNRLGNTVPEKNKRLADILEGIASLNFGHFEDNKIDL 174 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+LI + S + +F TP++V L +++ K + +YDP C Sbjct: 175 FGDAYEYLISNYASNAGKSGGEFFTPQNVSKLLAKIVMLGRSESNKIN-----KIYDPAC 229 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L A + +GQE+ T+ + M + + D Sbjct: 230 GSGSLLLQAQKQFTEHVIEDG------FYGQEINLTTYNLARMNMFLHNINYDK-----F 278 Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 NIQ+G TL+ + F +SNPP+ W D RF P L Sbjct: 279 NIQRGDTLTDPKHGNDKPFDAIVSNPPYSINWIGKDDPT-----LINDDRFAPAGVLAPK 333 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S F+MH + L + GRAAIV+ L+ G A E +IR++L++N+ +EAI+ Sbjct: 334 SKADFAFIMHSLSYL----SAQGRAAIVVFPGILYRGGA---EQKIRKYLVDNNFVEAII 386 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T+IAT + +L+ KT I+A+ + N ++ ++ + Sbjct: 387 QLPNNLFFGTSIATCILVLAKNKT---NTDTLFIDASAEFKKATN----NNVLTEENIDK 439 Query: 452 ILDIYVSRENGKF 464 IL+ ++EN + Sbjct: 440 ILESIENKENKDY 452 >gi|256854686|ref|ZP_05560050.1| type I restriction modification system protein HsdMI [Enterococcus faecalis T8] gi|256710246|gb|EEU25290.1| type I restriction modification system protein HsdMI [Enterococcus faecalis T8] gi|315030629|gb|EFT42561.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX4000] Length = 529 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + ++ S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|32455489|ref|NP_862615.1| hypothetical protein pAH82_p16 [Lactococcus lactis subsp. lactis] gi|7767522|gb|AAF69138.1|AF228680_2 HsdM [Lactococcus lactis] gi|9789463|gb|AAF98315.1|AF243383_16 HsdM [Lactococcus lactis subsp. lactis] Length = 537 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 102/497 (20%), Positives = 189/497 (38%), Gaps = 78/497 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT---- 51 M A L +W +A+ L G +++ +L + L E Sbjct: 1 MERRIIMATGLKQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKT 60 Query: 52 ---------RSAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 + E Y I+ + + + FY+ + + N Sbjct: 61 DTFPERSTQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDHLFYHY------RIKADNYEF 114 Query: 99 NLESYIASFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 NL A F++ + +F D D +ST ++ + ++ + I+L Sbjct: 115 NLTDLQAGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN 174 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 V+ + YE+LI F + + A +F TP+ V + + + ++ + Sbjct: 175 GD--VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHI 226 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDP G+G + + ++ + + HGQEL T + +++ ++ + Sbjct: 227 YDPAMGSGSLMLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM 279 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 N+ G TL D + + + + + NPP+ KW + RFG Sbjct: 280 -----NLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-K 329 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S FL+H L+ G IVL LF G A E IR+ LLE I Sbjct: 330 LAPKSKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAI 382 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 +A++ LP ++FF T+I T + IL ++ V I+A+ + +N + ++ D+ Sbjct: 383 DAVIGLPANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDE 435 Query: 448 QRRQILDIYVSRENGKF 464 +I+ Y RE+ + Sbjct: 436 HIDKIVSTYKKREDIER 452 >gi|326407943|gb|ADZ65012.1| type I restriction-modification system, M subunit [Lactococcus lactis subsp. lactis CV56] Length = 531 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 100/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52 L +W +A+ L G +++ +L + L E Sbjct: 5 LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64 Query: 53 SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 + E Y I+ + + FY+ + + N NL A F+ Sbjct: 65 AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118 Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + + +F D D +ST ++ + ++ + I+L V+ + Y Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F + + A +F TP+ V + + + ++ +YDP G+G Sbjct: 177 EYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ + + HGQEL T + +++ ++ + N+ G Sbjct: 231 MLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL D + + + + + NPP+ KW + RFG L S Sbjct: 279 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++ Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ Y Sbjct: 387 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439 Query: 458 SRENGKF 464 RE+ + Sbjct: 440 KREDIER 446 >gi|229547563|ref|ZP_04436288.1| possible site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX1322] gi|229307336|gb|EEN73323.1| possible site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX1322] Length = 529 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 106/483 (21%), Positives = 196/483 (40%), Gaps = 68/483 (14%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGGS 65 L ++ A++L +++ +L + L L T E+Y Sbjct: 4 ELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTKQ 63 Query: 66 NIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASFS 108 + ++ S+ +Y S+L + ++L+ S Sbjct: 64 TELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYLS 123 Query: 109 DNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 N K +F+D D S ++ + ++ K + I++ V+ + YE L Sbjct: 124 SNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEFL 181 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F SE + A +F TP V + ++ + + +++DPT G+G + + Sbjct: 182 ISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLMLN 235 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 N++ P + HGQEL T + +++ +E++ N++ G TL Sbjct: 236 VRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDTL 283 Query: 283 SKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 +KD T + + + + NPP+ KW D ++ R+G L S FL+ Sbjct: 284 NKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFLL 338 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 339 HGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFFG 391 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R+ Sbjct: 392 TSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIERQ 444 Query: 461 NGK 463 + + Sbjct: 445 DVE 447 >gi|169350757|ref|ZP_02867695.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552] gi|169292620|gb|EDS74753.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552] Length = 546 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 190/489 (38%), Gaps = 66/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52 M E ++ L + +W A+ L ++ +L + L + + Sbjct: 13 MAE-AENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLINDEK 71 Query: 53 ----SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL--ESYIAS 106 E+Y E ++ Y T + RNN Y+ Sbjct: 72 PSSLKEALEEYREALKDESADELMEEIKSACHYVIEPDLTYTYFADAARNNSFNREYLQK 131 Query: 107 FSDNAK-------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N + +F D D S +++ + + K +L ++ Sbjct: 132 AFNNIEQSNPLFADLFTDIDLYSNRLGTGDQKQSDTISNLIKEIDKADLL--NTDADILG 189 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 N YE+LI +F SE + A +F TP+ V + T + + + ++YDP G+ Sbjct: 190 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAIAGQEN------KKGLSVYDPCMGS 243 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + D P + +GQEL T+ + M + + + ++ + Sbjct: 244 GSLLLNAKKYSKD-------PRNIKYYGQELMTSTYNLARMNMFLHGVVPE-----NQKL 291 Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + G TL D T + F L NPP+ KW ++ E + FG L S Sbjct: 292 RNGDTLDADWPTDEETNFDMVLMNPPYSAKWSAAAGFLQDERFSD----FGV-LAPKSKA 346 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 FL+H L+ G AIVL LF G A E +IR LL + I A++ LP Sbjct: 347 DYAFLLHGLYHLKNS----GTMAIVLPHGVLFRGVA---EGKIREKLLRSGNIYAVIGLP 399 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+I T + +L + V I+A+ + N+GKK+ + D+ ++D Sbjct: 400 ANLFYNTSIPTCIVVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIESVID 452 Query: 455 IYVSRENGK 463 +Y+ RE Sbjct: 453 LYMKRETVD 461 >gi|261366732|ref|ZP_05979615.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176] gi|282571559|gb|EFB77094.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176] Length = 524 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 104/554 (18%), Positives = 210/554 (37%), Gaps = 70/554 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ E R A+ EKY G +D +F Sbjct: 18 LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDNVAFY- 73 Query: 75 VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127 F+ S +S + +++ I + K + +RL Sbjct: 74 TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALP----DNYYSRL 129 Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + I + ++ +YE+ + +F +G +F TP+ +V+L Sbjct: 130 HIDTAKLASLLDEIDKINTGDK--ENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 187 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ D LYDP CG+GG +M V + K + +GQE Sbjct: 188 IAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAHHGNKKK---VSIYGQE 233 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T+ +C + IR + ++ + +T + D + Y ++NPPF Sbjct: 234 YTNTTYKLCKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 283 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + +++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 284 --QKEWRGDNELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 337 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 + E +IRR L+EN+L+EAI+ LP +LF+ T+I+ LWIL+ K Sbjct: 338 SDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEETGEV 394 Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471 R ++ ++ + + K + ++ R ++ +Y + + + Sbjct: 395 KRFRNREREILFMDLRQMGSPYEK---KYIELTEEDRAKVTGVYHAWQQEGYEETYQNVP 451 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F Y F L + ++ ++ ++ + Sbjct: 452 EFCYSA-SFDEVAEKGFTLVPSRYIEFVNRDENIDFDTKMKALQSELRDLLIAEEKSKAD 510 Query: 532 AESFVKESIKSNEA 545 + KE E Sbjct: 511 LLTVFKELGYEIEL 524 >gi|257417159|ref|ZP_05594153.1| type I restriction modification system protein HsdMI [Enterococcus faecalis AR01/DG] gi|257158987|gb|EEU88947.1| type I restriction modification system protein HsdMI [Enterococcus faecalis ARO1/DG] Length = 529 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 106/484 (21%), Positives = 196/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + + S+ +Y ++L + ++L+ Sbjct: 63 QTELYKELLADEDSRQDLVDTLVDTLSYDIEPDYLFNSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|300070273|gb|ADJ59673.1| type I restriction-modification system, M subunit [Lactococcus lactis subsp. cremoris NZ9000] Length = 539 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 100/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52 L +W +A+ L G +++ +L + L E Sbjct: 5 LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64 Query: 53 SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 + E Y I+ + + FY+ + + N NL A F+ Sbjct: 65 AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118 Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + + +F D D +ST ++ + ++ + I+L V+ + Y Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F + + A +F TP+ V + + + ++ +YDP G+G Sbjct: 177 EYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ + + HGQEL T + +++ ++ + N+ G Sbjct: 231 MLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL D + + + + + NPP+ KW + RFG L S Sbjct: 279 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G IVL LF G A E IR+ LLE I+A++ LP ++ Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL ++ V I+A+ + +N + ++ D+ +I+ Y Sbjct: 387 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439 Query: 458 SRENGKF 464 RE+ + Sbjct: 440 KREDIER 446 >gi|91772524|ref|YP_565216.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242] gi|91711539|gb|ABE51466.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242] Length = 568 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 97/561 (17%), Positives = 188/561 (33%), Gaps = 113/561 (20%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-- 66 +WK A+ L + ++ V+L L+ + A E ++ + E + N Sbjct: 10 KEFETKLWKAADKLRSNMDVANYKHVVLGLIFLKYVSDAFEERQNELVELFKKDDDENIY 69 Query: 67 ----------------IDLESFVK---VAGYSFYNTSEYSLSTLGSTNT----------- 96 I E ++ F+ L + Sbjct: 70 YLPREDYSSTEEYQHAIAEELEIRDYYAEKNVFWVPKTARWDILKEKSVLSLNTVIWQNE 129 Query: 97 -------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG- 142 +N I + K I + L + NFS Sbjct: 130 QGKDVKLKSVSWLIDNALDEIEKANPKLKGILNRIGQYQL-----DSEKLIGLINNFSNT 184 Query: 143 -------IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 185 RFHHPEFNDKKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML---- 240 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEPE 250 +YDP G+GGF + + + + + +GQE P Sbjct: 241 -------EPYKGRVYDPAMGSGGFFVSSDKFIENHANVKHYNASEQKKQISVYGQESNPT 293 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 T + M IR ++ + + + + D R + ++NPPF K Sbjct: 294 TWKLAAMNMAIRGIDFNFGK------KNADSFLDDQHPDLRADFVMANPPFNMKEW---- 343 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 K + R+ G P ++ + ++ H+ + L G A ++ + S N Sbjct: 344 ---WHEKLADDPRWKYGTPPKNNANFAWMQHMLHHLAPT---GSMALLLANGSMSSNTNN 397 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-----RRGKVQLI 425 E +IR+ L+END++E +VALP LF T I + L+ K + R G++ I Sbjct: 398 ---EGKIRKTLVENDIVECMVALPGQLFTNTQIPACICFLTKDKAAKDDKRNRHGEILFI 454 Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR----RIKV 480 +A +L + R R D+ ++I D + + ++ D G+ + Sbjct: 455 DARNLGFMKDRVL----RDFKDEDIQRIADTFHTWQHN---WSEDKNEPGFCFSANHATI 507 Query: 481 LRPLRMSFILDKTGLARLEAD 501 + +F+L EA+ Sbjct: 508 EK---HNFVLTPGRYVGAEAE 525 >gi|300727765|ref|ZP_07061149.1| type I restriction-modification system methyltransferase subunit [Prevotella bryantii B14] gi|299774975|gb|EFI71583.1| type I restriction-modification system methyltransferase subunit [Prevotella bryantii B14] Length = 513 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 98/469 (20%), Positives = 178/469 (37%), Gaps = 49/469 (10%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + T S L +F+W A L G + + I P +R+ + + Sbjct: 13 ADETISLDELKSFLWSAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFDGFVAEGGE 72 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAK------A 113 E +++ + + +G +E + + Sbjct: 73 EYAGMQAAELAIRIPDGAHWRDVREVTENVGQRLVEAFIAIEQANPGEEADGRVIGGLDG 132 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF D + ++ ++ + ++FS L + P M YE+L+ +F + Sbjct: 133 IFGPKDGWTNKNKMPDH-IITSLIEDFSRYNLGLSSCPADEMGQAYEYLVGKFADDAGNT 191 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A++F T R VV L +L P ++YDPTCG+GG L ++ + G Sbjct: 192 AQEFYTNRTVVTLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDFLRQKGL- 240 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 + GQE+ T ++ + + +E +I + TL+ F Sbjct: 241 --PWQGVKVFGQEINALTASIARMNLYLNGVE-------DFSIVREDTLAHPAFVDGSHL 291 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 ++F L+NPP+ ++ + GR G P F+ H+ + Sbjct: 292 RKFDIVLANPPYSISEWN-----RSAFEHDKWGRNMWGTPPQGRADYAFIQHIVASMNND 346 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GR AI+L LF ESE+R+ L+ +D IEA++ L +LF+ + + I Sbjct: 347 H---GRCAILLPHGILFRNE----ESEVRKGLVLSDKIEAVIGLGPNLFYNAPMEACILI 399 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 +NRK +E + KV INA + R + + ++I + Y S Sbjct: 400 CNNRKAKELKNKVIFINAK--YEVTRK--NAESFLENSHIKKIAEAYKS 444 >gi|199581425|gb|ACH89414.1| FclIM [Flavobacterium columnare] Length = 814 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 114/579 (19%), Positives = 215/579 (37%), Gaps = 85/579 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +WK+ ++L G + + +L ++ + Sbjct: 1 MAIKKSELYSSLWKSCDELRGGMDASQYKDYVLTLLFVKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122 + G SF + L T N +++ I + A + + DF+ Sbjct: 45 YKGKKFSAIKVPEGASF-----DDMVALVGTPNIGDDINKKILNPIKEANKLNDFPDFND 99 Query: 123 TIARLEKAGLL----YKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 +L K L K+ F+ +L + D ++ + YE+L+R F ++ + Sbjct: 100 E-TKLGKGKNLVDTVGKLILIFNSPDLDFSSNNANDDDLLGDAYEYLMRHFATDSGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ + ++ T YDPTCG+G L Sbjct: 159 QFYTPSEVSKVLAKVI-----GITPQNSNAQTTAYDPTCGSGSLLLKVAEAAEKTID--- 210 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------ 289 +GQE E T + M++ + S I TLS F Sbjct: 211 ------LYGQEKEFATANLAKMNMILHG-------NPSAEIIADDTLSHPYFKSDNDDDN 257 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 K F Y +SNPPF K + ++ KN RF G+P +G FL+H+ ++ Sbjct: 258 LKSFDYIVSNPPFSLKSWSNGVSI----KNDPYKRFELGVPPEKNGDYAFLLHIIKSMKS 313 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+AAIVL LF G A E+EIR+ +++ I+ I+ LP +LF+ T I + Sbjct: 314 T----GKAAIVLPHGVLFRGNA---EAEIRKEIIKKGFIKGIIGLPANLFYGTGIPACII 366 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 +L R + +++A+ +T +G K R + + +I+D++ + Sbjct: 367 VLDKE-NAHNRSHIFMMDASKGFT---KDGNKNR-LQEKNIHKIVDVFNNELEVP----- 416 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 R++++ + + R + + + I + ++ + Sbjct: 417 ----KYSRKVEIKEISDDKNDYN-LNIPRYIDAQEEEDIQDIDAHIFGGIPERDIEALGK 471 Query: 529 YGWAESFVKESIKSNEAKT-LKVKASKSFIVAFINAFGR 566 Y +K + + K +K +S I I F Sbjct: 472 YWNIFPNLKNDLFVLQRKGYYDLKIDRSQIKNTIFNFQE 510 >gi|253569550|ref|ZP_04846960.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251841569|gb|EES69650.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 512 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 91/480 (18%), Positives = 173/480 (36%), Gaps = 53/480 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L +F+W A L G + + I P +R+ + + + Sbjct: 16 SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGYVCEGGIEYANA 75 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD----------NAKAIFE 116 E +++ + + +G + I + + IF Sbjct: 76 QAQELVIRIPDGAHWRDVRECTENVGQRLVEAFI--AIEQANPGEHADGRVIGGLEGIFG 133 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 D + A++ ++ + ++FS L P M YE+L+ +F + A++ Sbjct: 134 PKDGWTNKAKMPDH-IITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F T R VV L +L P ++YDPTCG+GG L ++ + + Sbjct: 193 FYTNRTVVDLMAEIL----------QPRPGESIYDPTCGSGGMLVKCLDFLR---KKGEP 239 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 + GQE+ T A+ + + +E +I + TL+ F ++F Sbjct: 240 WQGVKVFGQEINALTSAIARMNLYLNGVE-------DFSIVREDTLAHPAFVDGSRLRKF 292 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPP+ K + N + GR G P F H+ ++ Sbjct: 293 DIVLANPPYSIKTWN-----REAFMNDKWGRNFLGTPPQGRADYAFFQHILASMDDKT-- 345 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GR AI+ LF E +R L+++D++E ++ L +LF+ + + + I +N Sbjct: 346 -GRCAILFPHGVLFRDE----EQSLREKLIKSDVVECVIGLGANLFYNSPMEACILICNN 400 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 +K + K+ INA T + +I+ Y + + + Sbjct: 401 QKRSTLKNKIIFINALKEVTR----KNAESYLEKVHIEKIVSAYFNASEIQNFSTVASLE 456 >gi|225026005|ref|ZP_03715197.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353] gi|224956655|gb|EEG37864.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353] Length = 532 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 123/580 (21%), Positives = 214/580 (36%), Gaps = 91/580 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 M E ++ L + +W A+ L ++ +L + L + Sbjct: 1 MAEI-ENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDMICDGK 59 Query: 50 -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIA 105 T E Y S E ++ Y Y+ + N N E Sbjct: 60 PGTLKEALEAYEEVLQSEDGEELKAEMKQECHYVIEPELTYTCFADAARNNSFNREQLQK 119 Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +F+ +F D D S +++ + + K +L ++ Sbjct: 120 AFNNIEQSDPIFADLFTDIDLYSNRLGTGDQKQSDTVANLIKEIDKADLLNSDAE--ILG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 N YE+LI +F SE + A +F TP+ V + T + +D + ++YDP G+ Sbjct: 178 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAIDGQEE------KKGLSVYDPCMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A +V K P + +GQEL T+ + M + + ++ + Sbjct: 232 GSLLLNAKKYV-------KYPEYIRYYGQELNTSTYNLARMNMFLHGI-----VAENQKL 279 Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + G TL D TG+ F+ L NPP+ KW ++ E + L S Sbjct: 280 RNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDERFSDYGV-----LAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 FL+H L+ G AIVL LF G A E +IR LL + I A++ LP Sbjct: 335 DYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIGLP 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+I T + +L + V I+A+ + N+GKK+ + D+ ++D Sbjct: 388 ANLFYNTSIPTCIIVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIEAVMD 440 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 +Y RE V + SF+ + + + ++ + + Sbjct: 441 LYSKRE------------------TVEK---ESFLASFEDIEKNDFNLNIPRYVDTFEKE 479 Query: 515 ----WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550 ++LK M Q AE +K + K+ Sbjct: 480 PEIDLNEVLKEMEQTNKEIEQAEGEFLSLLKELTSSDEKI 519 >gi|294619904|ref|ZP_06699280.1| type I restriction-modification system, M subunit [Enterococcus faecium E1679] gi|291593841|gb|EFF25339.1| type I restriction-modification system, M subunit [Enterococcus faecium E1679] Length = 531 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 102/546 (18%), Positives = 210/546 (38%), Gaps = 73/546 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEHVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDN-- 110 + + Y EY + L + + + + Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAIVPEYLFNVLADQAKQATFQ--LNDLNKAFV 120 Query: 111 --------AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 +F+D D S ++ + ++ K + +++ V+ + Y Sbjct: 121 QLASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVL--EHDGDVIGDAY 178 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LI +F SE + A +F TP V + ++ + +++DPT G+G Sbjct: 179 EFLISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + N++ P + HGQEL T+ + +++ ++++ N++ G Sbjct: 233 MLNVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNG 280 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL+KD T + + + + NPP+ W D ++ R+G L S Sbjct: 281 DTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFA 335 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +L Sbjct: 336 FLLHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANL 388 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y Sbjct: 389 FFGTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYA 441 Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 R++ + ++ + + + P + ++ + + +K+ Q Sbjct: 442 ERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEK 501 Query: 517 DILKPM 522 ++L+ + Sbjct: 502 ELLEAI 507 >gi|10954529|ref|NP_044168.1| type I restriction system protein M [Methanocaldococcus jannaschii DSM 2661] gi|2496240|sp|Q60297|T1MH_METJA RecName: Full=Putative type I restriction enzyme MjaXP M protein; Short=M.MjaXP gi|1522675|gb|AAC37111.1| type I restriction enyzme ECOR124/3 I M protein [Methanocaldococcus jannaschii DSM 2661] Length = 558 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 103/549 (18%), Positives = 209/549 (38%), Gaps = 58/549 (10%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 N +WK A+ L + + V+L LR L C R + E+ Sbjct: 47 EFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEEELSNPNSELYTE 106 Query: 70 ESFVKV---AGYSFYNTS---------EYSL--STLGSTNTRNNLESYIA----SFSDNA 111 + ++ FY + + + S N +++ I + D Sbjct: 107 DPELRKMILEDEDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRL 166 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K + S L+ Y + FS I + V IYE+ + +F Sbjct: 167 KDVIPKIYAQSP---LDNHDYSY-LINKFSEISFGKEHRVKDVFGRIYEYFLGKFTEVEG 222 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TPR + L +L +++DP CG+GGF A+ + G Sbjct: 223 KLGGKFYTPRSLTKLIVDVLDV-----------KGGSIFDPACGSGGFFVSALEKLEREG 271 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +GQ+ +P + + ++IR E D I+ + D F Sbjct: 272 IDINEL---SIYGQDSDPMAYRLTKMNLIIRGAEGD--------IRIDDSYHDDKFMDMT 320 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F Y ++NPPF D + ++ + +G +P + + ++++H Sbjct: 321 FDYVVANPPFNDSEW-DANRIKPDDPRLRIGNKKVPVPPNGNANYMWILHFIYHTAP--- 376 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A V+++ L G E EIR+ ++ENDL+ IVA P LF+ ++ LW + Sbjct: 377 -NGKAGFVMANGALSAGNV---EGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIR 432 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K + +GKV INA +L+ + +++ I+ ++ ++I+D + E+G+ ++ Sbjct: 433 KEKPDYMKGKVLFINAKNLY---KQISRRQNILTEEHIKKIVDKFRMFESGEDEDKIN-- 487 Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ ++ + + ++L ++ + + + ++ K + ++ Sbjct: 488 ELGFAKVATIDEIAKNGYVLTPGRYVGVKIEDDGIPFEVKMKEYSEELKKLLDEEEKLRN 547 Query: 531 WAESFVKES 539 + + Sbjct: 548 KVKEILDAL 556 >gi|125623518|ref|YP_001032001.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis subsp. cremoris MG1363] gi|124492326|emb|CAL97260.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis subsp. cremoris MG1363] Length = 545 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 102/497 (20%), Positives = 188/497 (37%), Gaps = 78/497 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT---- 51 M A L +W +A+ L G +++ +L + L E Sbjct: 1 MERRIIMATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKT 60 Query: 52 ---------RSAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 + E Y I+ + + FY+ + + N Sbjct: 61 DTFPERSTQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEF 114 Query: 99 NLESYIASFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 NL A F++ + +F D D +ST ++ + ++ + I+L Sbjct: 115 NLTDLQAGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN 174 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 V+ + YE+LI F + + A +F TP+ V + + + ++ + Sbjct: 175 GD--VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHI 226 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDP G+G + + ++ + + HGQEL T + +++ ++ + Sbjct: 227 YDPAMGSGSLMLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM 279 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 N+ G TL D + + + + + NPP+ KW + RFG Sbjct: 280 -----NLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-K 329 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S FL+H L+ G IVL LF G A E IR+ LLE I Sbjct: 330 LAPKSKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAI 382 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 +A++ LP ++FF T+I T + IL ++ V I+A+ + +N + ++ D+ Sbjct: 383 DAVIGLPANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDE 435 Query: 448 QRRQILDIYVSRENGKF 464 +I+ Y RE+ + Sbjct: 436 HIDKIVSTYKKREDIER 452 >gi|308190009|ref|YP_003922940.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma fermentans JER] gi|307624751|gb|ADN69056.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma fermentans JER] Length = 540 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 120/540 (22%), Positives = 218/540 (40%), Gaps = 64/540 (11%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAVR-- 56 A L IWK A DL G DF + +L F R + L T+ Sbjct: 15 NSKEAQRAELHKTIWKIANDLRGSVDGWDFKQYVLGFLFYRYISENLTNFVNTKQEEAGV 74 Query: 57 ----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 ++ + I + F + F N ++ + L T +N+ I + Sbjct: 75 KDFDYAEISDKQANEIRNTLIQEKGFFILPSKLFKNVAKNCRNDLNLNETLDNIFKGIEA 134 Query: 107 F-----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RV 154 S+N K +F D + ++ +L E+ L I + + ++L + Sbjct: 135 SAIGTPSENDIKGLFNDVNVNN--DKLGNNVIERNKKLSGILEAINEMQLGDFHGHNIDA 192 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+L+ + + + +F TP++V L +L L + +E + ++YDP C Sbjct: 193 FGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLASLTLVDFSSDKREMKKEVDSVYDPAC 252 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + K GQE+ T+ + M + + Sbjct: 253 GSGSLLLKFAKIL------GKDKVTKGFFGQEINLTTYNLARINMFLHGINF-----ADF 301 Query: 275 NIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I+ G TL+ + K F +SNPP+ KW+ D + RF P L Sbjct: 302 SIKHGDTLNHPQYFENVKNFEAIVSNPPYSIKWDGDTNTT-----LINDRRFAPAGVLAP 356 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F+MH+ + L + G AAIV L+ G A E +IR++L++N+ ++AI Sbjct: 357 KSKADLAFVMHILHLL----SAKGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAI 409 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP++LFF T+IAT + +L K + + INA++ + +N + D+ Sbjct: 410 IQLPSNLFFGTSIATCIIVLRKNKKDS---DILFINASNEFIKEKN----NNKLTDENIN 462 Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 ILDIY + ++ SR + Y + + + ++ + ++L+ Sbjct: 463 NILDIYRYTKEKEYVSRNVPYEEVKENDYSLSVSTYVKAKDTSEKIDIVQVNAQLKELTK 522 >gi|262374258|ref|ZP_06067534.1| type I restriction-modification system, M subunit [Acinetobacter junii SH205] gi|262310816|gb|EEY91904.1| type I restriction-modification system, M subunit [Acinetobacter junii SH205] Length = 576 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 94/524 (17%), Positives = 167/524 (31%), Gaps = 105/524 (20%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L + +WK A+ L ++ ++L L+ + A + +S ++E + NI Sbjct: 9 LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68 Query: 68 -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTN----------- 95 D + F+ S + Sbjct: 69 YYMPRDQYDSEEEYQQAIADELEILDYYQEKNVFWVPKAGRWSNIRDAAALPIGSVIWQD 128 Query: 96 -------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 +N I + K I L + FS Sbjct: 129 EQGADVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183 Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 184 TSFTNPEYNGEQLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249 P R +YDP G+GGF + + + + +GQE P Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNP 292 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 T + M IR ++ + + + + +D R + ++NPPF K Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADSFLEDQHPDLRADFVMANPPFNIK----- 341 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 R+ G P + + ++ H+ + L G A ++ + S N Sbjct: 342 --DWWHASLENDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420 E EIR+ L+E DL+E IVALP LF T I +W L+ +K R G Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K I+A +L R D +I + + + G+ Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITNALHAWQQGEN 494 >gi|257900171|ref|ZP_05679824.1| type I restriction-modification system M subunit [Enterococcus faecium Com15] gi|293379346|ref|ZP_06625491.1| type I restriction-modification system, M subunit [Enterococcus faecium PC4.1] gi|257838083|gb|EEV63157.1| type I restriction-modification system M subunit [Enterococcus faecium Com15] gi|292642038|gb|EFF60203.1| type I restriction-modification system, M subunit [Enterococcus faecium PC4.1] Length = 531 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 104/544 (19%), Positives = 211/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y + L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|145634363|ref|ZP_01790073.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae PittAA] gi|229845102|ref|ZP_04465237.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae 6P18H1] gi|145268343|gb|EDK08337.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae PittAA] gi|229811938|gb|EEP47632.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae 6P18H1] Length = 558 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 91/572 (15%), Positives = 188/572 (32%), Gaps = 85/572 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W +A+ L ++ ++L L+ + + + + Sbjct: 23 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 82 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNL--ES 102 E+Y + ++ + A F+ TL NT L Sbjct: 83 LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQTLQEVSILNTGAELPWGG 141 Query: 103 YIASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP-- 151 ++ + F+ + R+ L + FS T Sbjct: 142 KLSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGE 201 Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 202 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 250 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP G+GGF + + + +GQE P T + M IR ++ Sbjct: 251 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 307 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 D + + + ++ K+ + ++NPPF + R+ Sbjct: 308 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 354 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ D Sbjct: 355 YGTPTKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 408 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 L+E +VALP+ LF T I +W L+ K +R+G+V I+A + R Sbjct: 409 LVECMVALPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 463 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504 + +I D + + S + + + + F+L E + Sbjct: 464 ANDIAKIADTLHAWQT---SDGYEDQAAFCKSATLEDIAGYEFVLTPGRYVGTAEQEDDG 520 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 521 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 552 >gi|218133858|ref|ZP_03462662.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC 43243] gi|217991233|gb|EEC57239.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC 43243] Length = 523 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 98/554 (17%), Positives = 206/554 (37%), Gaps = 70/554 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ E R+ + + G Sbjct: 17 LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH----GEKYADMKPFY 72 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E + ++++ I + K + +RL Sbjct: 73 TQENVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 128 Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + + I D + ++ +YE+ + +F +G +F TP+ +V+L Sbjct: 129 HIDTAKLASLLDEINRINT--DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 186 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L D LYDP CG+GG ++ V + K + +GQE Sbjct: 187 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + IR + ++ + +T + D + + ++NPPF Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADFIMANPPFN---- 282 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + E++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 283 --QKQWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 336 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 + E +IR+ L+EN L+EAI+ LP +LF+ T+I+ LW+L+ K Sbjct: 337 SDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQNGKL 393 Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471 +R ++ ++ + + K + ++ R ++ +Y + + + + Sbjct: 394 KRYRDREDEILFMDLRQMGSPYEK---KYIELTEEDRAKVTSVYHNWQQEGYEETYENVP 450 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F Y F L + +S ++ + ++Q+ Sbjct: 451 EFCYSA-SFEEVKEKGFTLVPSRYIEFVNRDENIDFDTKMKSLQGELKELLVQEEKSKSD 509 Query: 532 AESFVKESIKSNEA 545 + KE E Sbjct: 510 LLAVFKELGYEIEL 523 >gi|15603402|ref|NP_246476.1| hypothetical protein PM1537 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721926|gb|AAK03621.1| HsdM [Pasteurella multocida subsp. multocida str. Pm70] Length = 568 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 98/585 (16%), Positives = 193/585 (32%), Gaps = 99/585 (16%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48 M L +WK+A+ L + + ++ VIL L+ + A Sbjct: 1 MNNSEQQYLNELDAKLWKSADKLRSNIEAANYKHVILSLIFLKYVSDAFLARQHSIQQQL 60 Query: 49 -EPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---T 96 +P E+Y + ++ + F+ L + Sbjct: 61 TDPEHLYYLDPSFYDSEEEYQQALANELEQLDYY-TEENVFWVPKTARWDVLKTKATTPV 119 Query: 97 RNNLESYIASFSDNAKAI----------FEDFD--FSSTIARLE----KAGLLYKICKNF 140 L + + E + + +AR+ + L ++ F Sbjct: 120 GAVLWQDEQGEDVKMRNVSWLVDLALDTIEKSNDKLKNILARISQYQVEDNRLIELISLF 179 Query: 141 SGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 S + ++ ++YE+ + +F + ++ TP+ +V+L +L Sbjct: 180 SDTYFANPEYQGEKLNLKSKDILGHVYEYFLGKFALAEGKNGGEYYTPKSIVNLIVEMLQ 239 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVPHGQEL 247 ++DP G+GGF + + + +GQE Sbjct: 240 PYQG-----------RVFDPAMGSGGFFVSNDKFIETHAKEKHYASDEQRRRISIYGQES 288 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T + V M+IR ++ + + + + ++D R + ++NPPF K Sbjct: 289 TSTTWKLAVMNMVIRGIDFNFGK------KHADSFTEDQHPDLRADFVMANPPFNKD--- 339 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 R+ G P + + + ++ H+ L G A ++ + S N Sbjct: 340 ----DWWHESLEHDARWQYGTPPVGNANFAWVQHMLYHLAPT---GSMALLLANGSMSSN 392 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEER 418 GE EIR+ L++ D++E +V+LP LF T I +W L+ +K R Sbjct: 393 TG---GEGEIRKRLIDEDVVECMVSLPDKLFTNTRIPACIWFLTKDKKNGVSFDKKKRNR 449 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 G+V I+A L R D ++I+ + + + G+ D F Y Sbjct: 450 SGEVLFIDARQLGYMKDRV---LRDFTDADTQKIVQTFHNWQYGE--SYQDEAGFCYSA- 503 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 K+ + +IL A + +L M Sbjct: 504 KLADIQKHDYILTPGRYVGAVAQEEDCEPFAEKMQKLTALLNQQM 548 >gi|323700559|ref|ZP_08112471.1| type I restriction-modification system, M subunit [Desulfovibrio sp. ND132] gi|323460491|gb|EGB16356.1| type I restriction-modification system, M subunit [Desulfovibrio desulfuricans ND132] Length = 540 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 115/504 (22%), Positives = 191/504 (37%), Gaps = 79/504 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKY 59 MTE L +W A+ L G DF +L F LR L E + + + Y Sbjct: 1 MTESNQKR--LGQILWDIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEQAAKKELGKDY 58 Query: 60 -------------------LAFGGSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNT 96 G + + A Y ++ ++ + Sbjct: 59 PDPNAVDNGGRTPLSVWYDNNPGDIAAFEKQMRRKAHYVIKPDHLWTNIAYMAKTQNDEL 118 Query: 97 RNNLES---YI--ASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELH 146 N L+ YI SF +F + + S +L K L I + L Sbjct: 119 LNTLQEGFKYIENESFESTFSGLFSEINLGS--EKLGKTYQNRNDKLCTIITKIAD-GLA 175 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 T + + YE+LI +F + + A +F TP+ + + +A++ + Sbjct: 176 DFTTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDGQDPKTGPRKKL 235 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 ++ D CG+G L + + + + G + +GQE T+ +C ML+ ++ Sbjct: 236 ASVMDFACGSGSLLLNVRHKMVNAGGSVG-----MIYGQEKNITTYNLCRMNMLLHGVK- 289 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 D I G TL+ D + F ++NPPF +WE ++ Sbjct: 290 ----DSEFEIFHGDTLTNDWDKLREQNPAKKPTFDAVVANPPFSYRWEPNEA-------L 338 Query: 319 GELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 GE RF GL S FL+H + L+ G AI+L LF G E+ I Sbjct: 339 GEDMRFKNYGLAPKSAADFAFLLHGFHYLKDE----GVMAIILPHGVLFRGGK---EAAI 391 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 RR LLE+ I+ ++ LP +LF+ T I + +L K V +INA + + Sbjct: 392 RRKLLEDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLIINAAEHFEK---- 444 Query: 438 GKKRRIINDDQRRQILDIYVSREN 461 GK++ +N + +I+D Y R Sbjct: 445 GKRQNYLNAEHIDKIIDTYQQRPE 468 >gi|154499002|ref|ZP_02037380.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC 29799] gi|150271842|gb|EDM99068.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC 29799] Length = 524 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 104/554 (18%), Positives = 210/554 (37%), Gaps = 70/554 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ E R A+ EKY G +D +F Sbjct: 18 LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDNVAFY- 73 Query: 75 VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127 F+ S +S + +++ I + K + +RL Sbjct: 74 TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALP----DNYYSRL 129 Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + I + ++ +YE+ + +F +G +F TP+ +V+L Sbjct: 130 HIDTAKLASLLDEIDKINTGDK--ENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 187 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ D LYDP CG+GG +M V + K + +GQE Sbjct: 188 IAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAHHGNKKK---VSIYGQE 233 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T+ +C + IR + ++ + +T + D + Y ++NPPF Sbjct: 234 YTNTTYKLCKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 283 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + +++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 284 --QKEWRGDNELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 337 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 + E +IRR L+EN+L+EAI+ LP +LF+ T+I+ LWIL+ K Sbjct: 338 SDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEENGEV 394 Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471 R ++ ++ + + K + ++ R ++ +Y + + + Sbjct: 395 KRFRNREREILFMDLRQMGSPYEK---KYIELTEEDRAKVTGVYHAWQQEGYEETYQNVP 451 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F Y F L + ++ ++ ++ + Sbjct: 452 EFCYSA-SFDEVAEKGFTLVPSRYIEFVNRDENIDFDTKMKTLQSELRDLLVAEEKSKAD 510 Query: 532 AESFVKESIKSNEA 545 + KE E Sbjct: 511 LLTVFKELGYEIEL 524 >gi|256853743|ref|ZP_05559108.1| type I restriction-modification system M subunit [Enterococcus faecalis T8] gi|256710686|gb|EEU25729.1| type I restriction-modification system M subunit [Enterococcus faecalis T8] gi|315030240|gb|EFT42172.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX4000] gi|315144777|gb|EFT88793.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX2141] Length = 530 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 105/544 (19%), Positives = 211/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y S L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQNR---DVLFIDASREFVK----GKNQNKLSEENIQKILENYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|167856382|ref|ZP_02479108.1| type I restriction-modification system, M subunit [Haemophilus parasuis 29755] gi|167852488|gb|EDS23776.1| type I restriction-modification system, M subunit [Haemophilus parasuis 29755] Length = 537 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 124/577 (21%), Positives = 209/577 (36%), Gaps = 88/577 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58 MT+ L +W A+ L G DF +L F LR L E + Sbjct: 1 MTQ--EQLNQLGKTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGRDY 58 Query: 59 ---------------YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRN 98 Y D E ++ + S L+ + ST + Sbjct: 59 PQLSNDDKRTPLAVWYQENADFTADFEKQMRRKVHYVIKPEYLWGSIAELARVQSTELLS 118 Query: 99 NLE---SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 L+ YI SF +F + + +S +L E+ L +I K + + Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNS--EKLGKSYTERNNKLAEIVKRIAE-GISEF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F S + A +F TP+ V + + ++ + + Sbjct: 176 SADSDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKKKKLDS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + +A+ G H +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRHQMAENGGHIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G +L D F ++NPPF +W+ +D Sbjct: 288 --DTEFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDPKEDLAN------- 338 Query: 321 LGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF G GL S FL+H + L + G AI+L LF G A E +IR+ Sbjct: 339 DFRFNGYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRK 391 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL + I+A++ LP +LF+ T I + +L K E + INA D + + Sbjct: 392 KLLNDGNIDAVIGLPANLFYSTGIPVCILVLKKCKKE---DDILFINAADAFEKSKR--- 445 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARL 498 + + D+ +I++ Y R+ + GY +RI V + L+ Sbjct: 446 -QNRLTDEHIAKIIEHYQYRKETQ----------GYAKRISVQEIEDNDYNLNIARYVNN 494 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 A L+ HQ K + + + Sbjct: 495 TAVEEEIDLAANHQVLMDLDAKIKVATAKHNVFLKEL 531 >gi|237798537|ref|ZP_04586998.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021390|gb|EGI01447.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. oryzae str. 1_6] Length = 540 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 113/585 (19%), Positives = 205/585 (35%), Gaps = 97/585 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 M + L +W A+ L G DF +L F LR L E + + Y Sbjct: 1 MNDTN--RKQLGQTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEIAAKKELGNDY 58 Query: 60 LAF-------------------GGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNN 99 ++ Y +++ + N Sbjct: 59 PELPTDVLVKKGAATPLQVWYQENKADIPAFEKQMRRKVHYVIEPAHLWNSIANMARTQN 118 Query: 100 LE---------SYI--ASFSDNAKAIFEDFDF-SSTIAR--LEKAGLLYKICKNFSGIEL 145 E YI SF + +F + + S + R +++ L I + + L Sbjct: 119 GELLSTLQAGFKYIETESFESTFQGLFSEINLGSDKLGRTYVDRNAKLCTIIQKIAE-GL 177 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 + + + + YE+LI +F + + A +F TP+ + + +A++ Sbjct: 178 NEFSTDIDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGPKKR 237 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + ++ D CG+G L + V + +GQE T+ + ML+ ++ Sbjct: 238 LESVLDFACGSGSLLLNVRKRV-------GPHGVGKIYGQEKNITTYNLARMNMLLHGVK 290 Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 D I G TLS D F ++NPPF +W + + Sbjct: 291 -----DTEFEIYHGDTLSNDWDILRELNPAKKPAFDAIVANPPFSYRWNPTEAMAD---- 341 Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 RF G+ S FL+H + L+ G AI+L LF A E Sbjct: 342 ---DVRFKNHGVAPKSAADFAFLLHGFHFLKDE----GVMAIILPHGVLFRSGA---EER 391 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR LL++ I+ ++ LP++LF+ T I + +L K V INA + + Sbjct: 392 IRTKLLKDGHIDTVIGLPSNLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFAK--- 445 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGL 495 GK++ + ++ +I+ Y +RE GY RR+++ + + L+ + Sbjct: 446 -GKRQNQLTEEHIAKIISTYQTRE----------PEPGYARRVEMEEIEKNGYNLNISRY 494 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA-ESFVKES 539 T + + D L + + +F+KE Sbjct: 495 -----ISTASTETEIDLQAVNDELAALEEATQEARDKHNAFLKEL 534 >gi|145637804|ref|ZP_01793453.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] gi|145268997|gb|EDK08951.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] Length = 572 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 94/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W +A+ L ++ ++L L+ + + + + Sbjct: 36 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 95 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 E+Y + ++ + A F+ L + N + + Sbjct: 96 LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQALQEVSIL-NTGAELPWG 153 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 FS AK I + FD +L+ L + FS T Sbjct: 154 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 213 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 214 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 262 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 263 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 319 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 320 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 366 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 367 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKGIINA 420 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 421 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 475 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I + + + S + + + + F+L E + Sbjct: 476 TADDIAKIANTLHAWQK---SDGYEDQAAFCKSATLEEIADNDFVLTPGRYVGTAEQEDD 532 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 533 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 565 >gi|255690134|ref|ZP_05413809.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] gi|260624418|gb|EEX47289.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] Length = 507 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 110/535 (20%), Positives = 207/535 (38%), Gaps = 62/535 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65 + L +F+W A L G + + I P +R+ + V E + + G Sbjct: 16 TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112 ++ G + + N N L I + + Sbjct: 76 QVEDLPIRIPDGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF D + A++ ++ + ++FS L P M YE+L+ +F + Sbjct: 130 GIFGPKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKVCPADEMGQAYEYLVGKFADDAGN 188 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A++F T R VV L +L P ++YDPTCG+GG L ++++ + G+ Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGA 238 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 + GQE+ T ++ + + +E +I TL F Sbjct: 239 E---WQSVQVFGQEVNGLTSSIARMNLYLNGIE-------DFSIACADTLENPAFLDGSH 288 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F L+NPP+ K ++ N + GR G P F+ H+ ++ Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFIQHILASMDE 343 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR AI+L L E +RR L+E DL+++++++ +LFF + + + Sbjct: 344 KT---GRCAILLPHGVLNRME----EEIMRRKLIEEDLVDSVISIGKNLFFNSPMEACIM 396 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRM 467 + S++K +R +V I ATDL R G+ + ++ +I+ +Y N S + Sbjct: 397 LCSSKKPSDRIKQVLFIRATDLVE--RKNGE--SYLTEEHVEEIVSLYRGNTNVDNRSCI 452 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 +D +T + L + + L E W++ S S + ++ + Sbjct: 453 VDTKTISQNEYSISPKLYVKQTQTENILKFSEQIEQWQEYSCNIHSEYTKLINLL 507 >gi|145633239|ref|ZP_01788970.1| type I modification enzyme [Haemophilus influenzae 3655] gi|144986085|gb|EDJ92675.1| type I modification enzyme [Haemophilus influenzae 3655] Length = 571 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 91/572 (15%), Positives = 188/572 (32%), Gaps = 85/572 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W +A+ L ++ ++L L+ + + + + Sbjct: 36 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 95 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNL--ES 102 E+Y + ++ + A F+ TL NT L Sbjct: 96 LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQTLQEVSILNTGAELPWGG 154 Query: 103 YIASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP-- 151 ++ + F+ + R+ L + FS T Sbjct: 155 KLSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGE 214 Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 215 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 263 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP G+GGF + + + +GQE P T + M IR ++ Sbjct: 264 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 320 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 D + + + ++ K+ + ++NPPF + R+ Sbjct: 321 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 367 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ D Sbjct: 368 YGTPTKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 421 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 L+E +VALP+ LF T I +W L+ K +R+G+V I+A + R Sbjct: 422 LVECMVALPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 476 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504 + +I D + + S + + + + F+L E + Sbjct: 477 ANDISKIADTLHAWQT---SDGYEDQAAFCKSATLEDIAGYEFVLTPGRYVGTAEQEDDG 533 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 534 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 565 >gi|187927550|ref|YP_001898037.1| type I restriction-modification system, M subunit [Ralstonia pickettii 12J] gi|187724440|gb|ACD25605.1| type I restriction-modification system, M subunit [Ralstonia pickettii 12J] Length = 537 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 119/569 (20%), Positives = 202/569 (35%), Gaps = 86/569 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGGS-- 65 L +W A+ L G DF +L F LR L E + + Y S Sbjct: 7 QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGRDYPQQLDSSV 66 Query: 66 ------------NIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103 + E ++ Y + + + SY Sbjct: 67 STPLQRWYESNLDDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDAVLLKTLQKGFSY 126 Query: 104 IA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I SF+ + +F + + +S +L E+ L KI K + L + + Sbjct: 127 IETESFASTFRGLFSEINLAS--DKLGKTYAERNARLCKIIKEIAD-GLKQFSTDSDTLG 183 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F + + A +F TP+ + + +A++ + + D CG+ Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHLDRVMDLACGS 243 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L + + + + +GQE T+ + ML+ ++ D I Sbjct: 244 GSLLLNVRHRMKEAKGTIGK-----IYGQEKNITTYNLARMNMLLHGVK-----DSEFEI 293 Query: 277 QQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327 G TL + +F ++NPPF +WE + GE RF G Sbjct: 294 FHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEA-------LGEDVRFKNYG 346 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S FL+H L+ G AI+L LF G A E+ IR LL++ I Sbjct: 347 LAPKSAADFAFLLHGFQFLKQD----GVMAIILPHGVLFRGGA---EARIRTKLLKDGHI 399 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + ++ LP +LFF T I + +L K V INA + + GK++ I + Sbjct: 400 DTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GKRQNQILPE 452 Query: 448 QRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +I+D Y R E ++S RR+ + + F L+ + Sbjct: 453 HIDKIIDTYQFRKEEARYS----------RRVGMEEIEKNDFNLNISRYVSTTEAEEEID 502 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESF 535 L+ +H K M + + Sbjct: 503 LAAVHAELVSLDKKIKMATEQHNKFLKEL 531 >gi|325104014|ref|YP_004273668.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter saltans DSM 12145] gi|324972862|gb|ADY51846.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter saltans DSM 12145] Length = 519 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 209/561 (37%), Gaps = 67/561 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + ++ +W +A L G + +++ V+L L+ R + ++ Sbjct: 1 MAKKVQTKST-EEILWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFIRRREELIKE-- 57 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKA 113 G + A FY E + + + ++ I + + + Sbjct: 58 --GQNAFLEIPEFYQAENVFYLPVESRWTYIIENAKQEDITLKVDSALKTIERTNKSLEG 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 D FS L+++ + + I+ D D + +YE+ + +F +G Sbjct: 116 ALPDNYFSRLG--LDQSK-FSALLDTINNIDTLRDEAQDI-VGRVYEYFLSKFAIAEGKG 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TP+ +V+L ++ +YDP+CG+GG ++ + H Sbjct: 172 KGEFYTPKSIVNLIAEMI-----------EPYKGKIYDPSCGSGGMFVQSLKFIE---KH 217 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +GQEL T + + IR + ++ + T + D + Sbjct: 218 QGNKKDISIYGQELTNTTFKLAKMNLAIRGISANLGNKAA------DTFADDQHKELKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNG 352 Y ++NPPF E++ + R+ G +P S+ + +++++ +KL + Sbjct: 272 YIMANPPFNL------KDWRAENELTDDTRWTGYEVPPKSNANYAWILNMISKL----SQ 321 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G A +L++ L G E +IR+ ++ENDL+EAIV LP +F+ T+I+ LWIL+ Sbjct: 322 NGVAGFILANGALSGGGE---EYKIRKQIIENDLVEAIVILPRAMFYSTDISVTLWILNR 378 Query: 413 RKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 KTE R+G+V ++ K +++ I Y + Sbjct: 379 NKTERTVEVNDGIKNYRNRKGEVLFMDLRQKGEPFEK---KFIQFSENDIEYITGTYHNW 435 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + F V + + L + QS + L Sbjct: 436 QQKDFESKYTNEAEYCYSANVEEIRKKDYSLVPSKYIEFVNRDENLDYDTQMQSLQTE-L 494 Query: 520 KPMMQQIYPYGWAESFVKESI 540 K + QQ + V +S+ Sbjct: 495 KDLFQQEEALKQEVANVFKSL 515 >gi|294616002|ref|ZP_06695828.1| type I restriction-modification system, M subunit [Enterococcus faecium E1636] gi|291591136|gb|EFF22819.1| type I restriction-modification system, M subunit [Enterococcus faecium E1636] Length = 530 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 102/544 (18%), Positives = 211/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L ++Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEHVVLLADESLDEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y + L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +++ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVL--EHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|197302014|ref|ZP_03167077.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC 29176] gi|197298962|gb|EDY33499.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC 29176] Length = 532 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 111/563 (19%), Positives = 204/563 (36%), Gaps = 87/563 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 M E ++ L + +W A+ L ++ +L + L + Sbjct: 1 MAEI-ENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLLYDEK 59 Query: 50 -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIA 105 T E Y E +++ Y Y+ + N N E Sbjct: 60 PATLKEALEAYKEALEDESAEELKDQLSEECHYVMEPELTYTYFADAARNNSFNREQLQK 119 Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 F+ +F D D S +++ + + K +L ++ Sbjct: 120 GFNNIEQSDPIFADLFTDIDLYSNRLGAGDQKQSDTVASLIKEIDKADLLNSDAE--ILG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 N YE+LI +F SE + A +F TP+ V + T + + + ++YDP G+ Sbjct: 178 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAISGQED------KKGLSVYDPCMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + P + +GQE T+ + M + + ++++ Sbjct: 232 GSLLLNAKKY-------ASAPEYIKYYGQEQNTSTYNLARMNMFLHGI-----VAENQHL 279 Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + G TL D TG+ F+ L NPP+ KW ++ E + L S Sbjct: 280 RNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDERFSDYGV-----LAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 FL+H L+ G AIVL LF G A E +IR LL + I A++ LP Sbjct: 335 DYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIGLP 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+I T + +L + V I+A+ + N+GKK+ + D+ ++L Sbjct: 388 ANLFYNTSIPTCIIVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIDEVLA 440 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 +Y R+ V + S++ + + + ++ + + Sbjct: 441 LYSDRK------------------TVEK---ESYLASFEDIEKNDFNLNIPRYVDNFEKE 479 Query: 515 WLDILKPMMQQIYPYGWAESFVK 537 + ++Q + VK Sbjct: 480 EDVDINTLLQDMKKTDDELEQVK 502 >gi|291551220|emb|CBL27482.1| Type I restriction-modification system methyltransferase subunit [Ruminococcus torques L2-14] Length = 523 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 98/554 (17%), Positives = 206/554 (37%), Gaps = 70/554 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ E R+ + + G Sbjct: 17 LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH----GEKYADMKPFY 72 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E + ++++ I + K + +RL Sbjct: 73 TQENVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 128 Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + + I D + ++ +YE+ + +F +G +F TP+ +V+L Sbjct: 129 HIDTAKLASLLDEINRINT--DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 186 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L D LYDP CG+GG ++ V + K + +GQE Sbjct: 187 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + IR + ++ + +T + D + + ++NPPF Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADFIMANPPFN---- 282 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + E++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 283 --QKQWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SRNGVAGFLLANGAL 336 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 + E +IR+ L+EN L+EAI+ LP +LF+ T+I+ LW+L+ K Sbjct: 337 SDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQNGKL 393 Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471 +R ++ ++ + + K + ++ R ++ +Y + + + + Sbjct: 394 KRYRDREDEILFMDLRQMGSPYEK---KYIELTEEDRAKVTSVYHNWQQEGYEETYENVP 450 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F Y F L + +S ++ + ++Q+ Sbjct: 451 EFCYSA-SFEEVKEKGFTLVPSRYIEFVNRDENIDFDTKMKSLQGELKELLVQEEKSKSD 509 Query: 532 AESFVKESIKSNEA 545 + KE E Sbjct: 510 LLAVFKELGYEIEL 523 >gi|315639285|ref|ZP_07894447.1| type I restriction-modification system DNA-methyltransferase [Campylobacter upsaliensis JV21] gi|315480611|gb|EFU71253.1| type I restriction-modification system DNA-methyltransferase [Campylobacter upsaliensis JV21] Length = 535 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 120/511 (23%), Positives = 201/511 (39%), Gaps = 82/511 (16%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVR----- 56 +L + IWK A L G+ DF +L R + L + + Sbjct: 9 QAQRDALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISPATMQ 68 Query: 57 --------EKYLAFGGSNIDL-----ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRN 98 Y +ID E+ + G+ Y S+ + L S TN Sbjct: 69 TGGGGDNPNAYENLSDKDIDENEKSREAIIDAKGFFIY-PSQLFCNVLKSHAQDTTNLNQ 127 Query: 99 NLESYIASFSDNA---------KAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIEL 145 L + A + K +F D D +S+ L++ LY++ + + ++L Sbjct: 128 TLSNVFAQIEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEKLYQVMQEIATLDL 187 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 H + YE+L+R + + + +F TP++V +L L+ ++ K Sbjct: 188 HYSDNAIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSYLLARLVSYGKQSVNK----- 242 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP CG+G L + GQE+ P ++ +C ML+ + Sbjct: 243 ---VYDPACGSGSLLLQFAKVLGIDNIKQG------FFGQEINPTSYNLCRINMLLHDI- 292 Query: 266 SDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + +I G TL + + F +SNPP+ KW D D K RF Sbjct: 293 ----GFENFDIALGDTLLEPKHADDEPFDAIVSNPPYPTKWIGDDDP-----KLINDPRF 343 Query: 325 GPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 P L S + F MH+ + L G AIV L+ G E +IR++L+ Sbjct: 344 APAGVLAPKSYADLAFTMHMLSWLSPS----GTCAIVEFPGVLYRGGK---EKQIRKYLI 396 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + + I+ I+ LP +LFF TNIAT + +L K I+A++ +T I K+ Sbjct: 397 DQNFIDTIIQLPENLFFGTNIATSIIVLKKNKQSVAT---LFIDASEQFTKIT----KKN 449 Query: 443 IINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 I+ I++ Y RE+ + FSR++ Sbjct: 450 ILESTHINTIVEAYAKREDREHFSRLVSLEE 480 >gi|37679000|ref|NP_933609.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] gi|37197742|dbj|BAC93580.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] Length = 546 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 120/578 (20%), Positives = 208/578 (35%), Gaps = 89/578 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT+ L +W A+ L G DF +L F LR L E + + + Y Sbjct: 1 MTQ--EQLNKLGKTLWDIADTLRGAMNADDFRDYMLSFLFLRYLSDNFEAAAKKELGKDY 58 Query: 60 LAFGGSNIDLESF---------VKVAGYSFYNT-----------------SEYSLSTLGS 93 L + SF+ T S ++ + Sbjct: 59 LDLPKDVLRDLKMSNPLEVWYDENPDDISFFETQMRRKLHYIIKPEHLWSSIAEMARVQD 118 Query: 94 TNTRNNLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143 LE YI SF+ + + +F + + +S +L ++ L I + S Sbjct: 119 DELLKTLEEGFKYIENESFNSSFQGLFSEINLNS--EKLGKKPSDRNAKLCTIIQKVSEG 176 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 ++ + YE+LI F + + A +F TP+ + + + ++ Sbjct: 177 IAQFS-TDTDILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKK 235 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + + D CG+G L + H+ G +GQE T+ + ML+ Sbjct: 236 NKLNRVLDFACGSGSLLLNVRKHITVAGGSIGK-----IYGQEKNITTYNLARMNMLLHG 290 Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 ++ D +I G TL D +F ++NPPF +WE D Sbjct: 291 VK-----DTEFDIFHGDTLFNDWELLNEKNPAKKLKFDAVVANPPFSYRWESD------R 339 Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + E RF G+ S FL+H + L G AI+L LF A E Sbjct: 340 AEFKEDFRFKNHGIAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRSGA---E 392 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 IR LL++ I+ ++ LP++LFF T I + +L K V INA+D Sbjct: 393 QRIRSKLLKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKY---DDVLFINASDEENFE 449 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 + GK++ + + ++I+D Y R+ + RR+ + + F L+ + Sbjct: 450 K--GKRQNKLRPEDIQKIVDTYRFRDQEER---------YSRRVSMEEIEKNDFNLNISR 498 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 L H+ +DI K + + + + Sbjct: 499 YVSTAKAEAKVDLQAEHKK-LVDIEKNINEALDKHNSF 535 >gi|213971212|ref|ZP_03399330.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv. tomato T1] gi|301382340|ref|ZP_07230758.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. tomato Max13] gi|302062746|ref|ZP_07254287.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. tomato K40] gi|213924081|gb|EEB57658.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv. tomato T1] Length = 540 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 118/561 (21%), Positives = 206/561 (36%), Gaps = 85/561 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 M + + L +W A+ L G DF +L F LR L E + + Y Sbjct: 1 MNDT--NRKQLGQTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEIAAKKELGNDY 58 Query: 60 LA------------------FGGSNIDLESFVKVA-GYSFYNTSEYSL----STLGSTNT 96 + + D+ +F K Y L + + T + Sbjct: 59 PQLPADVRLKTDGPTPLQIWYEENEADIPAFEKQMRRKVHYVIEPAHLWNSIANMARTQS 118 Query: 97 RNNLE------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143 L YI SF + +F + + S +L ++ L I + + Sbjct: 119 GELLTTLQAGFKYIETESFESTFQGLFSEINLGS--EKLGRTYVDRNAKLCTIIQKIAE- 175 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 L+ + + + YE+LI +F + + A +F TP+ + + +A++ Sbjct: 176 GLNEFSSDIDSLGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSHEPKTGPK 235 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + ++ D CG+G L + V I +GQE T+ + ML+ Sbjct: 236 RRLESVLDFACGSGSLLLNVRKRV-------GPHGIGKIYGQEKNITTYNLARMNMLLHG 288 Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 ++ D I G TLS D F ++NPPF +W+ + E Sbjct: 289 VK-----DTEFEIYHGDTLSNDWDVLRQLNPAKKPTFDAIVANPPFSYRWDPTEAMAE-- 341 Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 RF GL S FL+H + L+ G AI+L LF A E Sbjct: 342 -----DVRFKNHGLAPKSAADFAFLLHGFHFLKDD----GVMAIILPHGVLFRSGA---E 389 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 IR LL++ I+ ++ LP++LF+ T I + IL K + V INA D +T Sbjct: 390 ERIRTKLLKDGHIDTVIGLPSNLFYSTGIPVCILILKKCK---QTDDVLFINAADHFTK- 445 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 GK++ + D+ +I+ Y +RE +++R ++ + +S + +T Sbjct: 446 ---GKRQNQLTDEHIAKIIKAYQTREPEPRYARRVEMEEIEKNAYNLNISRYISMVSAET 502 Query: 494 GLARLEADITWRKLSPLHQSF 514 + + L Q+ Sbjct: 503 EIELQAVNDELTTLEETIQAA 523 >gi|262377417|ref|ZP_06070640.1| type I restriction-modification system, M subunit [Acinetobacter lwoffii SH145] gi|262307647|gb|EEY88787.1| type I restriction-modification system, M subunit [Acinetobacter lwoffii SH145] Length = 576 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 93/524 (17%), Positives = 167/524 (31%), Gaps = 105/524 (20%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L + +WK A+ L ++ ++L L+ + A + +S ++E + NI Sbjct: 9 LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68 Query: 68 -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTNTR--------- 97 D + F+ ++ + + Sbjct: 69 YYMPRDQYDSEEEYQQAIADELEILDYYQEKNVFWVPKAARWLSIRNAAAQAIGSIIWQD 128 Query: 98 ---------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 +N I + K I L + FS Sbjct: 129 EQGQDVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183 Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 184 TSFTNPEYNGEQLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249 P R +YDP G+GGF + + + + +GQE P Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNP 292 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 T + M IR ++ + + + + D R + ++NPPF K Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADSFLDDQHPDLRADFVMANPPFNIK----- 341 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 R+ G P + + ++ H+ + L G A ++ + S N Sbjct: 342 --DWWHASLESDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420 E EIR+ L+E DL+E IVALP LF T I +W L+ +K R G Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K I+A +L R D +I + + G+ Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITQTLHAWQQGEN 494 >gi|159038425|ref|YP_001537678.1| N-6 DNA methylase [Salinispora arenicola CNS-205] gi|157917260|gb|ABV98687.1| N-6 DNA methylase [Salinispora arenicola CNS-205] Length = 810 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 101/477 (21%), Positives = 187/477 (39%), Gaps = 76/477 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + L +W++ ++L G + + +L ++ + ++ Sbjct: 6 SDLYGALWRSCDELRGGMDASQYKDYVLTLLFVKYVTD----------------KATSDR 49 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFEDFDFSSTIA 125 AG SF + + + I A + + DF+ Sbjct: 50 TSLVDVPAGGSF-----DDMVACKGDREIGDKINRIVGRLAEANGLGRVVDLADFNDE-D 103 Query: 126 RLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 RL K L K+ + ++ + D ++ + YE+L+R F E + F TP Sbjct: 104 RLGKGKEMQDRLSKLVTIIADLDFRDNRAEGDDLLGDAYEYLMRHFARESGKSKGQFYTP 163 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V + L+ T+YDPTCG+G L + P L Sbjct: 164 AEVSRVLARLVGIG------PGTRQDHTVYDPTCGSGSLL---------LKVAAEAPRGL 208 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE + T A+ M++ E +I++G T++ F + F + + Sbjct: 209 TIYGQEKDNATWALARMNMILHGYE-------DCDIRKGDTIASPQFTQGAQLQTFDFAV 261 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF + + +E E GRF G P +G FL+H+ L+ G+A Sbjct: 262 ANPPFSV--KSWSNGLEHE-----YGRFDVGRPPDKNGDFAFLLHILTSLKS----NGKA 310 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+++ LF G A +G IR+ LL I ++ LP +LF+ T I + +L + Sbjct: 311 AVIMPHGVLFRGNAEAG---IRKELLRRGYIMGVIGLPANLFYGTGIPACMVVLDKEHAQ 367 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 E R + +I+A+ + +G K R + +I+D++ R + +SR++ Sbjct: 368 E-RTSIFMIDASQGFI---KDGSKNR-LRSQDIHRIVDVFTRRTEVERYSRVVPLYE 419 >gi|229105723|ref|ZP_04236352.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock3-28] gi|228677612|gb|EEL31860.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock3-28] Length = 497 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 105/528 (19%), Positives = 204/528 (38%), Gaps = 80/528 (15%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDLESF 72 A DL G +F IL R L +E + ++ A+ + Sbjct: 1 MANDLRGQMDAYEFKDYILGLIFYRYLSEKVEHRAEQLLKEDNITFSQAWTDKEYKEDLA 60 Query: 73 VKVAGYSFYNTSE----YSLSTLGSTNTRNNLE--------SYIASFS------DNAKAI 114 + G Y + + N + I + + ++ + + Sbjct: 61 EYLVGELGYVIEPQYLFSNFVSEIEKGVNGNFDVELLQNGVKAIEASTMGTDSQEDFQNL 120 Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 F+D D +S ++L ++ L+ K+ N + I D V ++ + YE++I +F + Sbjct: 121 FDDMDLTS--SKLGRTVESRSKLIAKVIINIAEIPFLQDDVEIDILGDAYEYMISQFAAN 178 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP+ V + ++ IR++YD TCG+G L Sbjct: 179 AGKKAGEFYTPQQVSKVLAKIVTAGKSE--------IRSVYDGTCGSGSLLLRVGKEAK- 229 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + +GQE T+ + ML+ + +I+ TL + Sbjct: 230 ---------VYKYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNADTLEEPQHLD 275 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLE 347 +RF ++NPP+ KW D + E RF L S F+ H ++L Sbjct: 276 ERFEAIVANPPYSAKWSADDKFKDDE-------RFSAYSKLAPKSKADFAFIQHFIHQL- 327 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATY 406 +G G A+VL LF G A E IR++L+E + ++A++ LP ++F+ T+I T Sbjct: 328 ---DGNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPTC 381 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + + +K + V I+A++ + GK + ++D+ +I+ Y++RE K+S Sbjct: 382 ILVF--KKCRKHDEHVVFIDASNEFEK----GKNQNHLSDEHVEKIVSTYLNRETIDKYS 435 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + P ++ ++ + ++L + Sbjct: 436 YAATLDEIKENDYNLNIP---RYVDTFEEEEPVDLEAVAKRLQEIDAE 480 >gi|319939011|ref|ZP_08013375.1| type I restriction-modification system [Streptococcus anginosus 1_2_62CV] gi|319812061|gb|EFW08327.1| type I restriction-modification system [Streptococcus anginosus 1_2_62CV] Length = 531 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 104/509 (20%), Positives = 199/509 (39%), Gaps = 78/509 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSA 54 + N IW A +L G+ +++ IL F R L L+ Sbjct: 2 SQTQEITNKIWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEQYLINNDILDLEDGKT 61 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIASFS 108 + + Y + +A Y + + +L + ++ ++ F+ Sbjct: 62 INQLYKEQATGEELADYLEDIASSLGYAIAPEDTWLSLLTRIENNEVIPSDYQTIFDHFN 121 Query: 109 DNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 NA + +F D + T + ++A L +I K I D ++ Sbjct: 122 ANAELNKEAVQDFRGVFNDINLGYTRLGSSTNDRAKSLNRIVKLVDDINYKSDDG-RDIL 180 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 IYE LI++F + + +F TP +V + ++ D + ++YDPT G Sbjct: 181 GFIYEELIKKFAASAGKKGGEFYTPHEVSQILAKIVTDKVE-----QTERTFSVYDPTMG 235 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L N + + + P + GQEL T+ + +++ + + N Sbjct: 236 SGSLLLTVGNEL----PNGQKPGAIKYFGQELNTTTYNLARMNLMMHGV-----TYSNMN 286 Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + TL D G + F ++NPP+ KW+ + + + RF Sbjct: 287 LSNADTLESDWPDGPDEKGVDHPRSFDAVVANPPYSAKWDNADNKL-------KDPRFSE 339 Query: 327 --GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S F++H L N G AIVL LF G A E +IR+ L+E Sbjct: 340 YGKLAPASKADFAFILHSVYHL----NDTGTMAIVLPHGVLFRGAA---ELKIRQTLVEK 392 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + ++ ++ LP +LF+ T+I T + + K + I+A+ + GK + + Sbjct: 393 NYLDTVIGLPANLFYGTSIPTTVLVFRKNKENR---DILFIDASKDFDK----GKNQNTL 445 Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRT 472 ND +I++ + +R++ K++R++ + Sbjct: 446 NDTHIEKIIETFRNRQDVNKYARLVSFEE 474 >gi|251788561|ref|YP_003003282.1| type I restriction-modification system, M subunit [Dickeya zeae Ech1591] gi|247537182|gb|ACT05803.1| type I restriction-modification system, M subunit [Dickeya zeae Ech1591] Length = 535 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 121/557 (21%), Positives = 209/557 (37%), Gaps = 90/557 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------- 51 MTEF L +W A+ L G DF +L F LR L E Sbjct: 1 MTEFEK--QKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58 Query: 52 -RSAVREK-------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-- 101 + E+ Y + E ++ + + +Y +++ +++ Sbjct: 59 PKQKEGERQPPLTLWYEQNEQDVPEFEKLMRRKVH-YVIEPQYLWTSIAEMARTQHVKLL 117 Query: 102 -------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147 YI SF+ + +F + + +S +L E+ L KI K + L Sbjct: 118 NTLQAGFKYIEEESFASVFRGLFSEINLAS--EKLGKTYGERNDRLCKIIKEIAD-GLKQ 174 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + + YE+LI +F + + A +F TP+ + + +A++ + Sbjct: 175 FSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQRSHLD 234 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +++D CG+G L + + G +GQE T+ + ML+ ++ Sbjct: 235 SVFDFACGSGSLLLNIRKRMGQHGIGK-------IYGQEKNITTYNLARMNMLLHGVK-- 285 Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 D +I G TL D + +F ++NPPF +WE + Sbjct: 286 ---DSEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPTET-------LA 335 Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + RF GL S FL+H + L+ G AI+L LF A E+ IR Sbjct: 336 DDVRFKNHGLAPKSAADFAFLLHGFHFLKED----GVMAIILPHGVLFRSGA---EARIR 388 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 LL++ I+ ++ LP +LFF T I + +L K V INA + + G Sbjct: 389 TKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFDK----G 441 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 K++ I+ D ++I+D Y GK RR+ + + F L+ + Sbjct: 442 KRQNQISSDHIKEIIDTY-KFRKGKTRYA--------RRVSMEEIEKNDFNLNISRYVST 492 Query: 499 EADITWRKLSPLHQSFW 515 KLS +H Sbjct: 493 AEAEEEIKLSSVHAELV 509 >gi|220930107|ref|YP_002507016.1| type I restriction-modification system, M subunit [Clostridium cellulolyticum H10] gi|220000435|gb|ACL77036.1| type I restriction-modification system, M subunit [Clostridium cellulolyticum H10] Length = 525 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 107/561 (19%), Positives = 211/561 (37%), Gaps = 69/561 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVREK---- 58 + L N +W +A+ L G +++ +L + L E V E Sbjct: 1 MSDLNNQLWASADILRGKMDASEYKNYLLGLIFYKYLSDQELRAVYEEEHGKVSEYPNRH 60 Query: 59 ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDN 110 + + D++ + ++ +Y TL + + +F + Sbjct: 61 DQLAGLLEWYKEDSADVKDII-SKKLGYFIVPDYLFYTLRKKADEYELQISDLQNAFIEL 119 Query: 111 AK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + +F+D D +ST ++ + ++ K I L V+ + YE+ Sbjct: 120 GRQGNHFTGLFDDIDLTSTKLGANAQQRNITITEVIKALDEIYLF--GHDGDVIGDAYEY 177 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F + + A +F TP+ V + + ++ + + +YDP G+G + Sbjct: 178 LIGQFAAGAGKKAGEFYTPQTVSKIISEIVSIGQEEV------APFHIYDPAMGSGSLML 231 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + V + P + HGQEL T+ + +++ +E ++ G T Sbjct: 232 NIRQFVKN-------PWKVHYHGQELNTTTYNLARMNLILHNVE-----QSQMRLRNGDT 279 Query: 282 LSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L +D + + F+ + NPP+ W D + R+G L S FL Sbjct: 280 LDEDWPSDEPYLFNAVVMNPPYSANWSADDKFLSDPR----FERYG-KLAPKSKADFSFL 334 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L N G IVL LF G E IR+ LLE I+A++ LP ++F+ Sbjct: 335 LHGFYHL----NENGTMGIVLPHGVLFRGA---SEGVIRKTLLEMGAIDAVIGLPANIFY 387 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + I+ + + V I+A+ + +N + + + ++I+D Y R Sbjct: 388 GTSIPTTVLIMKKNRGKR---DVLFIDASKDFEKQKN----QNNLRKEDIQKIVDTYKKR 440 Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 E+ K++ + DY + P + ++ + + L+ + ++ Sbjct: 441 ESIHKYAHLADYDEIVRNEYNLNIPRYVDTFEEEVQIDIVALSNEMVDLNLQIKQKEMEF 500 Query: 519 LKPMMQQIYPYGWAESFVKES 539 L + G E Sbjct: 501 LGLLDDLAITDGTRELIEATK 521 >gi|38423944|dbj|BAD02152.1| slr6095 [Synechocystis sp. PCC 6803] Length = 477 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 101/442 (22%), Positives = 170/442 (38%), Gaps = 57/442 (12%) Query: 38 FTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-- 93 L+R E + + + F+ +T+ Sbjct: 1 MLFLKRASDVFEQQYQQIIRDNLAKGRSEEEAKQRAERASSYQDFFVPERARWATIRDEL 60 Query: 94 -TNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPD 148 N N L +A+ + + DF+ + + + L ++ +F+ L + Sbjct: 61 HDNVGNGLNKALAALEESNVALSGVLGHIDFNRKVGKTTLSDTKLRELIFHFNKYRLLNE 120 Query: 149 TVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + YE+LI F + +F TPRDVV L L+ P Sbjct: 121 DFVFPDLLGAAYEYLIAEFADSAGKKGGEFYTPRDVVQLMVRLV----------KPAAGM 170 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 ++YDP G+GG L A ++ +CG + L GQ+ A+C ML+ ++ Sbjct: 171 SIYDPCVGSGGMLIQAKQYIEECGGDSR---NLSLCGQDNNGGVWAICKINMLLHGIK-- 225 Query: 268 PRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 I+ TL +RF LSNPPF + +EK R Sbjct: 226 -----DARIENEDTLQNPRHIVDGELERFDRVLSNPPFSQNYEKTN--------LEFKNR 272 Query: 324 FGPGLPKIS--DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F G S ++F H+ + L++ GG A V+ LF G E +IR+ L Sbjct: 273 FNHGWCPESGKKADLMFAQHMLSVLKV----GGIVATVMPHGVLFRGG---DEQKIRKSL 325 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGK 439 +E D IEAI+ LP +LF+ T I + ++ K ERRGKV INA + + G+ Sbjct: 326 IEKDQIEAIIGLPPNLFYGTGIPACILVMRRAGEKLPERRGKVLFINADAEFYA----GR 381 Query: 440 KRRIINDDQRRQILDIYVSREN 461 + + + +I++ + + + Sbjct: 382 AQNYLKPEHIEKIVNAFEAFVD 403 >gi|150020305|ref|YP_001305659.1| type I restriction-modification system, M subunit [Thermosipho melanesiensis BI429] gi|149792826|gb|ABR30274.1| type I restriction-modification system, M subunit [Thermosipho melanesiensis BI429] Length = 799 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 120/584 (20%), Positives = 224/584 (38%), Gaps = 92/584 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L +W+ A +L G + + +L ++ V ++Y Sbjct: 1 MAMRKTQLYTHLWEAANELRGGMDASQYKNYVLTILFVKY-----------VTDRYKNDP 49 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDNAKAIFED 117 ++ F + S L + ++ I + + K + + Sbjct: 50 YAD-------------FVVPEDGSFDALVEAKGKPDIGERINKVLARLAEENELKGVIDL 96 Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171 DF + +K L K+ F EL+ D ++ ++YE+ +++F +E Sbjct: 97 VDFDDSTKLGNGKDKVDKLTKLIAIFENPELNFSKNRADGDDILGDVYEYFMKKFATEAG 156 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP +V + ++ + + +T YDPTCG+G L + Sbjct: 157 KSKGQFYTPAEVSRIMAKII------GIENANSPDQTAYDPTCGSGSLLLKVAD------ 204 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289 + P + +GQE++ + + M++ I+QG+TLS F Sbjct: 205 ---EAPVEISLYGQEIDIDVANLARMNMILHG-------KPDAVIEQGNTLSDPKFKNKD 254 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 K F + ++NPPF + + + V+ E N RF G+P +G FL+H L Sbjct: 255 GSLKTFDFAVANPPFSQ--KNWMNGVDPE--NDSFHRFDDGIPPAKNGDYAFLLHFIKSL 310 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G GR AI+L LF G A E+EIRR L++ I+ I+ LP +LF+ T I Sbjct: 311 KP---GKGRGAIILPHGVLFRGNA---EAEIRRNLVKKGYIKGIIGLPPNLFYGTGIPAI 364 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + ++ R+G + +I+A+ + R +G K R + + +I+ +V+ E Sbjct: 365 IMVIDKENAHARKG-IFMIDASKGF---RKDGPKNR-LRERDIHKIVTTFVNFEEIP--- 416 Query: 467 MLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 GY R + + + + L+ + R + +H I K + + Sbjct: 417 -------GYSRMVSLEEIEKNDYNLN---IPRYVDSTEEEDIQDIHAHLHGGIPKRDIDK 466 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569 I + KE + E ++K + FI D Sbjct: 467 IEELKIFKGLKKELFEEKEDCYYRLKVGIELLQEFIEIHEEIDK 510 >gi|148827015|ref|YP_001291768.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae PittGG] gi|148718257|gb|ABQ99384.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae PittGG] Length = 558 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 94/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W +A+ L ++ ++L L+ + + + + Sbjct: 23 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 82 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 E+Y + ++ + A F+ L + N + + Sbjct: 83 LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQALQEVSIL-NTGAELPWG 140 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 FS AK I + FD +L+ L + FS T Sbjct: 141 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNG 200 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 201 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 249 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 250 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 306 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 307 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 353 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + ++ H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 354 AYGTPPKGNANYAWIQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 407 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DLIE +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 408 DLIECMVALPGQLFTNTQIPACIWFLNCNK--KRKGEVLFIDARQIGYMKDRV---LRDF 462 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I + + + S + + + + F+L E + Sbjct: 463 TADDIAKIANTLHAWQT---SDGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 519 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 520 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 552 >gi|261492504|ref|ZP_05989058.1| type I site-specific deoxyribonuclease, methyltransferase subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496910|ref|ZP_05993278.1| type I site-specific deoxyribonuclease, methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307434|gb|EEY08769.1| type I site-specific deoxyribonuclease, methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311867|gb|EEY13016.1| type I site-specific deoxyribonuclease, methyltransferase subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 552 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 102/538 (18%), Positives = 185/538 (34%), Gaps = 83/538 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56 L +W A+ L + ++ ++L F L+ + + ++ ++ Sbjct: 19 LNDLDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 78 Query: 57 ---EKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLSTLGST---NTRNNL--ESYI 104 + S I E + A F+ + + S N + L Sbjct: 79 LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 138 Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151 S FE + R+ +L + FS Sbjct: 139 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 198 Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 199 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML-----------KPYSG 247 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGF A + + + +GQE P T + V M IR + D Sbjct: 248 RIYDPAMGSGGFFVQADRFIQAHQGNRNA---ISVYGQESNPNTRKLAVMNMAIRGIPFD 304 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + TL L K+ ++NPPF +K + R+ G Sbjct: 305 FGD------KPEDTLLNPLHIDKKMDVVMANPPFNQKAWWSESLAN-------DPRWAYG 351 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 P + + +L H+ L G+ A++L++ + SGE +IR+ +++ DL+ Sbjct: 352 TPPQGNANFAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGDIRKNIVQADLV 405 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ALP LF T I +WI++ K + +V INAT + R D Sbjct: 406 EAMIALPNQLFTNTQIPACIWIINKAKAR--KKEVLFINATQIGYMKDRV---LRDFTAD 460 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL--ARLEADIT 503 +I D Y + + + F Y + + F+L A +E D Sbjct: 461 DIAKISDTYHNWQKQD--GYENIPAFCYCA-TLDEIAKNDFVLTAGRYVGAAVEEDDG 515 >gi|312902060|ref|ZP_07761321.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0470] gi|311290842|gb|EFQ69398.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0470] Length = 529 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 198/484 (40%), Gaps = 68/484 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + ++ S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPYQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTYNLAKMNLILHGVEAEDM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL + V I+A+ +T GK + + + +I+ Y+ R Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443 Query: 460 ENGK 463 ++ + Sbjct: 444 QDVE 447 >gi|293603337|ref|ZP_06685765.1| type I restriction-modification system DNA-methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292818247|gb|EFF77300.1| type I restriction-modification system DNA-methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 535 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 119/569 (20%), Positives = 206/569 (36%), Gaps = 88/569 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY-------- 59 L +W A+ L G DF +L F LR L E + + + Y Sbjct: 7 QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKRELGQDYPIQIDNSV 66 Query: 60 ----LAFGGSNIDL--ESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103 + SN+D E ++ Y Y + + E SY Sbjct: 67 STPLQRWYESNLDDVPEFEKQMRRKVHYVIEPQYLWGNIAELARTQDGELLKTLQRGLSY 126 Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I SF+ + +F + + +S +L E+ L KI + L + + Sbjct: 127 IETESFASTFRGLFSEINLAS--DKLGKTYTERNARLCKIIMEIAD-GLSQFSTDSDTLG 183 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F + + A +F TP+ + + +A++ + + D CG+ Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQPISTILSAIVTLDGQEPATGQRSHLDNVLDFACGS 243 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L + + + I HGQE T+ + ML+ ++ D +I Sbjct: 244 GSLLLNVRHRM-------GPHGIGKIHGQEKNITTYNLSRMNMLLHGVK-----DSEFDI 291 Query: 277 QQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327 G TL + + +F ++NPPF +W + E RF G Sbjct: 292 FHGDTLLNEWDALRETNPAKMPKFDAVVANPPFSYRW-------DSSASLAEDMRFKNYG 344 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S FL+H + L+ G AI+L LF G A E+ IR LL + I Sbjct: 345 LAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---EARIRTKLLRDGHI 397 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + ++ LP +LFF T I + +L K V INA + + GK++ + + Sbjct: 398 DTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GKRQNQLLPE 450 Query: 448 QRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +I+D Y R+ ++S RR+ + + F L+ + Sbjct: 451 HIDKIIDTYQFRKVEPRYS----------RRVGMEEIEKNDFNLNISRYVSTAEAEEEID 500 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESF 535 L+ +H + K + + Sbjct: 501 LAAVHANLLATEQKIAEAKKRHNQYLAEL 529 >gi|331654119|ref|ZP_08355119.1| type I restriction-modification system, M subunit [Escherichia coli M718] gi|331047501|gb|EGI19578.1| type I restriction-modification system, M subunit [Escherichia coli M718] Length = 535 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 116/556 (20%), Positives = 199/556 (35%), Gaps = 88/556 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTEF L +W A+ L G DF +L F LR L E Sbjct: 1 MTEFDK--QKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYS----------------LSTLGSTNTRNNLE--- 101 + + SE+ +++ +++ Sbjct: 59 PKQKEGKRQPPLTLWYEQNEQDISEFEKLMRRKVHYVIEPQYLWTSIAEMARTQHVKLLN 118 Query: 102 ------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 YI SF+ + +F + + +S +L E+ L KI K + Sbjct: 119 TLQAGFKYIEEESFASVFRGLFSEINLAS--EKLGKTYGERNDRLCKIIKEIADGLKQFS 176 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 T + + YE+LI +F + + A +F TP+ + + +A++ I + Sbjct: 177 TNS-DTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQRSHIDS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 ++D CG+G L + + G +GQE T+ + ML+ ++ Sbjct: 236 VFDFACGSGSLLLNIRKRMGQHGIGK-------IYGQEKNITTYNLARMNMLLHGVK--- 285 Query: 269 RRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D +I G TL D + +F ++NPPF +WE + + Sbjct: 286 --DSEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPSET-------LAD 336 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L+ G AI+L LF E+ IR Sbjct: 337 DVRFKNYGLAPKSAADFAFLLHGFHFLKED----GVMAIILPHGVLFRSGT---EARIRT 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ I+ LP +LFF T I + +L K + INA + + GK Sbjct: 390 KLLKDGHIDTIIGLPANLFFSTGIPVCILVLKKCKKP---DDILFINAAEHFDK----GK 442 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 ++ I+ D ++I+D Y R+ RR+ + + F L+ + Sbjct: 443 RQNQISSDHIKKIIDAYKFRKEEPRYA---------RRVSMEEIEKNDFNLNISRYVSTA 493 Query: 500 ADITWRKLSPLHQSFW 515 L+ +H Sbjct: 494 EPEEEINLTAVHAELV 509 >gi|146329144|ref|YP_001209148.1| type I restriction-modification system, M subunit [Dichelobacter nodosus VCS1703A] gi|146232614|gb|ABQ13592.1| type I restriction-modification system, M subunit [Dichelobacter nodosus VCS1703A] Length = 826 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 96/482 (19%), Positives = 185/482 (38%), Gaps = 68/482 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISDKY--------------- 45 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSS 122 G + D G SF + + + I + + A++ F DF+ + Sbjct: 46 GDSDDFPPVTIPPGASFKDMIALKGKSDIGDKINTQIIQPLIDANTRLARSDFPDFNDPN 105 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 +L + + + F EL+ D ++ + YE+L+R F S+ + Sbjct: 106 ---KLGEGQAMVDRISNLIGIFQKPELNFSKNRAENDDILGDAYEYLMRHFASQSGKSKG 162 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T YDPTCG+G L + Sbjct: 163 QFYTPSEVSRIMAKIVGISPANTV-----ASTTAYDPTCGSGSLL---------LKVAAE 208 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291 + GQE++ T + M++ + NI QG+TL+ F + Sbjct: 209 AGKPITLEGQEMDVTTAGLARMNMILH-------DFPTANILQGNTLTSPKFKDGELLRT 261 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPPF K + RF G P G +L+H+ ++ Sbjct: 262 YDYVVANPPFSDKTWSTGLTPANDA----YQRFVWGEPPKKQGDYAYLLHIIRSMKST-- 315 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+ A +L LF G A E+ IR L+++ +++ I+ LP++LF+ T I + +L Sbjct: 316 --GKGACILPHGVLFRGNA---EAVIREKLVQSGILKGIIGLPSNLFYGTGIPACILVLD 370 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470 ER+G + +I+A+ + +G K R + + +I+D + ++SRM+ Sbjct: 371 KETASERKG-IFMIDASKGFI---KDGAKNR-LREQDIHKIVDTFTKLTELPRYSRMVPL 425 Query: 471 RT 472 Sbjct: 426 TE 427 >gi|293556630|ref|ZP_06675196.1| type I restriction-modification system, M subunit [Enterococcus faecium E1039] gi|291601216|gb|EFF31502.1| type I restriction-modification system, M subunit [Enterococcus faecium E1039] Length = 531 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 103/544 (18%), Positives = 210/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYNTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y + L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ ++ Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|226954358|ref|ZP_03824822.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244] gi|226834894|gb|EEH67277.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244] Length = 576 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 96/522 (18%), Positives = 167/522 (31%), Gaps = 105/522 (20%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L + +WK A+ L ++ ++L L+ + A + ++ ++E + NI Sbjct: 9 LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVADAFDERQAELKELFAQADDHNI 68 Query: 68 -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTN----------- 95 D + F+ +TL +T Sbjct: 69 YYMPRDQYDTEEEYQQAIADELEIIDYYQEKNVFWVPKAARWTTLQNTAALAIGSIIWQD 128 Query: 96 -------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 +N I + K I L + FS Sbjct: 129 EHGQDVKLRSISWLVDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183 Query: 143 IEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 184 TSFTKPEYNGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249 P R +YDP G+GGF + + + + +GQE P Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNP 292 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 T + M IR ++ + + + T D R + ++NPPF K Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFNIK----- 341 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 R+ G P + + ++ H+ + L G A ++ + S N Sbjct: 342 --DWWHASLESDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420 E EIR+ L+E DL+E IVALP LF T I +W L+ +K R G Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 K I+A +L R D +I + + G Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITHTLHAWQQG 492 >gi|68250154|ref|YP_249266.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae 86-028NP] gi|68058353|gb|AAX88606.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae 86-028NP] Length = 556 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 94/572 (16%), Positives = 187/572 (32%), Gaps = 85/572 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +W +A+ L ++ ++L L+ + + ++ + Sbjct: 21 LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDNFTHQQEKIQAELSDAENPLY 80 Query: 68 DLESFVK-------------------VAGYSFYNTSEYSLSTLGSTNTRNNLESYI---A 105 +F A F+ + L + N + + Sbjct: 81 LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSIL-NTGAELPWGG 139 Query: 106 SFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP-- 151 FS AK I + FD +L+ L + FS T Sbjct: 140 KFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGE 199 Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 200 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 248 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP G+GGF + + + +GQE P T + M IR ++ Sbjct: 249 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 305 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 D + + + ++ K+ + ++NPPF + R+ Sbjct: 306 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 352 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ D Sbjct: 353 YGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 406 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 L+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 407 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 461 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504 D +I D + + S + + + + F+L E + Sbjct: 462 ADDIAKIADTLHTWQK---SDGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDDG 518 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 519 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 550 >gi|315641380|ref|ZP_07896455.1| type I restriction-modification system DNA-methyltransferase [Enterococcus italicus DSM 15952] gi|315482873|gb|EFU73394.1| type I restriction-modification system DNA-methyltransferase [Enterococcus italicus DSM 15952] Length = 535 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 106/489 (21%), Positives = 192/489 (39%), Gaps = 74/489 (15%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVR 56 ++ +L +W +A+ L ++ +L + L LE + S + Sbjct: 4 NQNSKNLYQALWSSADILRSKMDANEYKNYLLGIVFYKYLSDRMLVFAVDLLEESASDLE 63 Query: 57 EKY----LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIASF-- 107 E A + + + Y + + L + LE F Sbjct: 64 EAQVIFTKAMDDGEVKDDLLYALKDEFSYLIEPSLTFTALVHDVYRGKFQLEDLAQGFRN 123 Query: 108 ----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 ++ + +FED D S +L ++ + + K + ++L ++ + Sbjct: 124 IEQSNELFENLFEDVDLYSK--KLGATPQKQNQTIANVMKELADLDL---AHQGDILGDA 178 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F SE + A +F TP+ + L T + +D + ++YDPT G+G Sbjct: 179 YEYLISQFASESGKKAGEFYTPQPISELMTRIAIDGKED------QKGFSVYDPTMGSGS 232 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + GQEL T + M++ ++S +++++ Sbjct: 233 LLLNVRRF-------SNEKGFINYFGQELNTSTFNLARMNMILHGVDS-----ANQHLRN 280 Query: 279 GSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL D T + F L NPP+ KW +K ++ RF L S Sbjct: 281 GDTLDGDWPTEEPTNFDAVLMNPPYSAKWSGEKGFLD-------DPRFSMYGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 FL+H L+ G AI+L LF G E +IR LL N I+ ++ LP Sbjct: 334 DFAFLLHGYYHLKES----GVMAIILPHGVLFRGN---SEGKIREILLRNGAIDTVIGLP 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 ++FF T+I T + IL + + V I+A++ +T GK + ++ + I+D Sbjct: 387 ANIFFSTSIPTTVIILKKNRPNQ---DVLFIDASNGFTK----GKNQNVLEPNHIEAIID 439 Query: 455 IYVSRENGK 463 Y R + + Sbjct: 440 TYQKRVSIE 448 >gi|290473111|ref|YP_003465972.1| Type I restriction-modification enzyme subunit M [Xenorhabdus bovienii SS-2004] gi|289172405|emb|CBJ79172.1| Type I restriction-modification enzyme subunit M [Xenorhabdus bovienii SS-2004] Length = 819 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 101/475 (21%), Positives = 181/475 (38%), Gaps = 70/475 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKNELYSSLWASCDELRGGMDASQYKDYVLTMLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDN--AKAIFEDFDF 120 N V G F + L + + + I +D +F+ +F Sbjct: 45 YKNDRYGIIVIPEGAGF-----DDMVALKGKKDIGDEINKIIRKLADENGLGTMFDVANF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D +M + YE+L+R F +E + Sbjct: 100 NDE-EKLGKGKEMIDRLSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ D ++YDPTCG+G L A + + Sbjct: 159 QFYTPAEVSLVLAKIIGINDK------TPRDASVYDPTCGSGSLLLKASD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 P L GQE++ T ++ M++ ESD N D K F + Sbjct: 204 APRGLSIFGQEMDVTTSSLAKMNMILHGHESDVHSIQQGNTIASPVFKDDKGQLKTFDFA 263 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + E GRFG G+P +G FL+H+ L+ G+ Sbjct: 264 VANPPFSNKN----WTSGINPREDEFGRFGWGIPPEKNGDYAFLLHILKSLKST----GK 315 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A++L LF G A ES IR L++ I I+ LP +LF+ T I + +L + Sbjct: 316 GAVILPHGVLFRGNA---ESLIRENLIKQGYIRGIIGLPANLFYGTGIPACIIVLDKQDA 372 Query: 416 EERR----------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + +I+A+ + +G K R + +I++++ ++ Sbjct: 373 ISADFDAEGKVTRGRDIFMIDASRDFI---KDGNKNR-LRSQDIYKIVEVFTQQK 423 >gi|332655470|ref|ZP_08421207.1| ribosomal protein L11 [Ruminococcaceae bacterium D16] gi|332515605|gb|EGJ45218.1| ribosomal protein L11 [Ruminococcaceae bacterium D16] Length = 524 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 104/554 (18%), Positives = 211/554 (38%), Gaps = 70/554 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ E R A+ EKY G +D +F Sbjct: 18 LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDNVAFY- 73 Query: 75 VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127 F+ S +S + +++ I + K + +RL Sbjct: 74 TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALP----DNYYSRL 129 Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + I + ++ +YE+ + +F +G +F TP+ +V+L Sbjct: 130 HIDTAKLASLLDEIDKINTGDK--ENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 187 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ D LYDP CG+GG +M V + K + +GQE Sbjct: 188 IAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAHHGNKKK---VSIYGQE 233 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T+ +C + IR + ++ + +T + D + Y ++NPPF Sbjct: 234 YTNTTYKLCKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 283 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + +++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 284 --QKEWRGDNELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 337 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 + E +IRR L+EN+L+EAI+ LP +LF+ T+I+ LWIL+ K Sbjct: 338 SDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEENGEV 394 Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471 R ++ ++ + + K + ++ R ++ +Y + + + Sbjct: 395 KRFRNREREILFMDLRQMGSPYEK---KYIELTEEDRAKVRSVYHAWQQEGYEETYQNVP 451 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F Y F L + ++ ++ + ++ + Sbjct: 452 EFCYSA-SFDEVAEKGFTLVPSRYIEFVNRDENIDFDTKMKTLQSELRELLVAEEKSKAD 510 Query: 532 AESFVKESIKSNEA 545 + KE E Sbjct: 511 LLTVFKELGYEIEL 524 >gi|283778919|ref|YP_003369674.1| type I restriction-modification system, M subunit [Pirellula staleyi DSM 6068] gi|283437372|gb|ADB15814.1| type I restriction-modification system, M subunit [Pirellula staleyi DSM 6068] Length = 835 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 108/556 (19%), Positives = 202/556 (36%), Gaps = 84/556 (15%) Query: 19 AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78 ++L G + + +L L+ + +N+ G Sbjct: 51 CDELRGGMDASQYKDYVLVLLFLKYISD----------------KYANVPYAPIEVPKGS 94 Query: 79 SFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLL 133 SF + L T + +++ I + A + + DF+ + +L EK L Sbjct: 95 SFK-----DMVALKGTKDIGDDINKKIIAPIAQANRLSDMPDFNDS-TKLGSGKEKVDRL 148 Query: 134 YKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 + F L D ++ + YE+L+R F +E + F TP +V + + Sbjct: 149 TNLIAIFENKSLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQI 208 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 + T+YDPTCG+G L + + + +GQE + Sbjct: 209 IGIK-----TAKTTGSTTVYDPTCGSGSLLLKVSD---------EAQTPVTLYGQEKDAA 254 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWE 306 T + ++ + + I+QG+TLS F K F Y ++NPPF K Sbjct: 255 TSGLARMNTILHNMPTAL-------IEQGNTLSNPRFVDGSSLKTFDYVVANPPFSDK-- 305 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + + RF G+P G +L+H+ L+ G A +L LF Sbjct: 306 --RWSTGLDPASDPHARFTLGIPPAKQGDYAYLLHIIRSLKSTGQG----ACILPHGVLF 359 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 G A E+EIR+ LL I+ I+ LP +LF+ T I + ++ K RR + +I+ Sbjct: 360 RGNA---EAEIRKNLLRKGYIKGIIGLPANLFYGTGIPACIVVIDK-KEANRRQAIFMID 415 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485 A+ + +G K R + +I+D + + K+S R + + + Sbjct: 416 ASSGYM---KDGPKNR-LRARDIHKIVDTFNQQLEVPKYS----------RLVTIEEIEK 461 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 F L+ + + + + ++ + K K N Sbjct: 462 NDFNLNLPRYIDSQTPEDIQNIDGHLKGGIP--VEDTTSLEPYWKVCPGLQKALFKKNRT 519 Query: 546 KTLKVKASKSFIVAFI 561 + ++ + I I Sbjct: 520 GFVDLRVEPAEIKTTI 535 >gi|154496690|ref|ZP_02035386.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC 29799] gi|150273942|gb|EDN01042.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC 29799] Length = 524 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 103/557 (18%), Positives = 198/557 (35%), Gaps = 71/557 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-G 64 + + N + + A+ L ++ +LP ++ L + E ++++Y Sbjct: 2 TTKKDIENALMRGADTLRDTIDAANYKDYVLPIMFVKYLSDSYEDALDELKKEYSGIRLE 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS--S 122 F SF + + S + A + + D++ + Sbjct: 62 RQKRYLPFTIAEECSFQSLYDQRFSDKIGQLINAAMRKIEADNNQQLAGVLNTVDYNSEN 121 Query: 123 TIARLE-KAGLLYKICKNFSGIELHPDTVP-------DRVMSNIYEHLIRRFGSEVSEGA 174 + L+ K +L + ++F + L P + V+ + YE++I +F S + A Sbjct: 122 ALGTLDHKKAILRDLLEDFESLSLRPSEIEVKAGQVPADVIGDAYEYMIGQFASMAGKKA 181 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP V + ++ +YDPTCG+G L A Sbjct: 182 GSFYTPAAVSEIMARIV----------DVQPGERVYDPTCGSGSLLIKAAK--------K 223 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291 + + +GQE+ + A+ M I + I G TL+ LF Sbjct: 224 QNSKEVSIYGQEVNGSSVAMAKMNMYIHEI-------RDAKIAWGDTLANPLFLDSDGNL 276 Query: 292 --FHYCLSNPPFGKKWE------------KDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 F ++N PF K K K + E + RF G+P S G Sbjct: 277 LLFDAIVANMPFSKDKWASGFNPGGESSGKGKKEFKMEASLDKFHRFDWGVPPASKGDWA 336 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H+ L + GR A V LF G A E IR+ ++E +L++A++ LP +L Sbjct: 337 FLLHMIASL----SVNGRIAAVAPHGVLFRGAA---EGRIRQKVIEENLLDAVIGLPENL 389 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---RRIINDDQRRQILD 454 F+ T+I + + +T + I+A+ + K + + + I++ Sbjct: 390 FYGTSIPACILVFKKNRT---NTDILFIDASKKDENGNPRYIKASNQNELAPEHIDAIVE 446 Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 Y +R + KF+ + + P ++ ++ + L ++ Sbjct: 447 AYQTRTDKDKFAHVATLEEIQENEYNLNIP---RYVDTFEEEEPIDIQKVQANIDRL-KA 502 Query: 514 FWLDILKPMMQQIYPYG 530 + M + G Sbjct: 503 EIAEAETQMDAYLKELG 519 >gi|261210086|ref|ZP_05924384.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC341] gi|297580647|ref|ZP_06942573.1| type I restriction-modification system methyltransferase subunit [Vibrio cholerae RC385] gi|260840851|gb|EEX67393.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC341] gi|297535063|gb|EFH73898.1| type I restriction-modification system methyltransferase subunit [Vibrio cholerae RC385] Length = 546 Score = 289 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 122/578 (21%), Positives = 208/578 (35%), Gaps = 89/578 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT+ L +W A+ L G DF +L F LR L E + + + Y Sbjct: 1 MTQ--EQLNKLGKTLWDIADTLRGAMNADDFRDYMLSFLFLRYLSDNFEAAAKKELGKDY 58 Query: 60 LAFGGSNIDLESF---------VKVAGYSFYNT-----------------SEYSLSTLGS 93 L + SF+ T S ++ + Sbjct: 59 LDLPKDVLRDLKMSNPLEVWYDENPDDISFFETQMRRKLHYIIKPEHLWSSIAEMARVQD 118 Query: 94 TNTRNNLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143 LE YI SF+ + + +F + + +S +L ++ L I + S Sbjct: 119 DELLKTLEEGFKYIENESFNSSFQGLFSEINLNS--EKLGKKPSDRNAKLCTIIQKVSEG 176 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 ++ + YE+LI F + + A +F TP+ + + + ++ Sbjct: 177 IAQFS-TDTDILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKK 235 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + + D TCG+G L + H+ G +GQE T+ + ML+ Sbjct: 236 KNLNRVLDFTCGSGSLLLNVRKHITSAGGSIGK-----IYGQEKNITTYNLARMNMLLHG 290 Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 ++ D I G TL D +F ++NPPF +WE D Sbjct: 291 VK-----DTEFEIFHGDTLLNDWDLLNEKNPAKKLKFDAVVANPPFSYRWESD------R 339 Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + E RF G+ S FL+H + L G AI+L LF G E Sbjct: 340 AEFKEDFRFKNHGIAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGG---SE 392 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 IR LL++ I+ ++ LP++LFF T I + +L K V INA+D Sbjct: 393 QRIRSKLLKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKY---DDVLFINASDEENFE 449 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 + GK++ + D ++I+D Y R+ + RR+ + + F L+ + Sbjct: 450 K--GKRQNKLRPDDIQKIVDTYRFRDQEER---------YSRRVSMEEIEKNDFNLNISR 498 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 L H+ +DI K + + + + Sbjct: 499 YVSTAKAEAKVDLQAEHKK-LVDIEKDINEALDKHNSF 535 >gi|303241302|ref|ZP_07327807.1| type I restriction-modification system, M subunit [Acetivibrio cellulolyticus CD2] gi|302591141|gb|EFL60884.1| type I restriction-modification system, M subunit [Acetivibrio cellulolyticus CD2] Length = 802 Score = 289 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/627 (17%), Positives = 228/627 (36%), Gaps = 96/627 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKSELYSSLWSSCDELRGGMDASQYKDYVLVMLFVKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + G +F + L T N +++ I + + DF+ Sbjct: 45 YAGMPYAPVTIPEGSTFK-----DMVALKGTANIGDDINKKIIGPIAEKNQLSDMPDFND 99 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 + +L L + F EL D ++ + YE+L+R F +E + Sbjct: 100 -VNKLGSGKEMVDRLTNLIAIFEHKELDFSKNRADGDDILGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F +P +V + + ++ + ++ T+YDPTCG+G L + + Sbjct: 159 QFYSPAEVSRVISKIIGINTSNVNAQT-----TVYDPTCGSGSLLLKVSD---------E 204 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----- 290 + +GQE + T + M + + I+QG+TL+ +F + Sbjct: 205 AGIKISLYGQEKDSATTGLARMNMYLH-------DNPLHEIKQGNTLANPMFKDENGKLK 257 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELP 349 F Y ++NPPF K + + E RF G+P +G +L+H+ L+ Sbjct: 258 TFDYVVANPPFSDK----RWGNGVNTEKDEYERFKDYGVPPSKNGDFAYLLHIIRSLKSS 313 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+ A +L LF G A E+EIR+ ++ I+ I+ LP +LF+ T I + + Sbjct: 314 K---GKGACILPHGVLFRGNA---EAEIRKNIIRKGYIKGIIGLPANLFYGTGIPACIIV 367 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRML 468 L R+G + +I+A+ + +G K R + +I+D++ + E K+S+M+ Sbjct: 368 LDKENAANRKG-IFMIDASKGFM---KDGNKNR-LRSMDIHKIVDVFNNQYEIDKYSKMV 422 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ-SFWLDILKPMMQQIY 527 + + P + + + + + + + + ++ Sbjct: 423 TFSEIENNEYNLNIPRYIDSQEGEDVQDIEAHLLGGIPMYDIEALKDYWKVCPNLKGALF 482 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF-----GRKDPRADPVTD-VNG-- 579 + ++ + + K K + A+ + KD + + G Sbjct: 483 SKSSRDRYLDLKVAKDYIK--KTIFEHTEFKAYSDKMEAHFKEWKDKYIEILKGMKKGLV 540 Query: 580 --EWIPDTNLTEYENVPYLESIQDYFV 604 + I D ESI ++ Sbjct: 541 PKKVIAD----------LSESILAHYK 557 >gi|150398838|ref|YP_001322605.1| type I restriction-modification system, M subunit [Methanococcus vannielii SB] gi|150011541|gb|ABR53993.1| type I restriction-modification system, M subunit [Methanococcus vannielii SB] Length = 520 Score = 289 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 119/549 (21%), Positives = 217/549 (39%), Gaps = 71/549 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA- 54 M A L IW+ A +L G DF + +L R + L E R A Sbjct: 1 MISKEQERAELHRTIWQIANNLRGSVDGWDFKQYVLGMLFYRFISENLTNYINEEERKAG 60 Query: 55 ---------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101 ++ + + F + FYN ++ + L T N+E Sbjct: 61 NKDFDYSKLSDKEAEFGRKDTVIEKGFYILPSELFYNVTKNARNDPNLNETLSKVFKNIE 120 Query: 102 SYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 S F D+ K +F+D D +S +L ++ L + + + ++L Sbjct: 121 SSAKGFESEDDLKGLFDDLDVNS--NKLGSTVEQRNKQLVNLLEAINELKLGNYSENTID 178 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + + + +F TP++V L + + + K +YDPT Sbjct: 179 AFGDAYEYLMTMYAANAGKSGGEFYTPQEVSELLAKITIVGKKDVNK--------VYDPT 230 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + +GQE+ T+ +C M + + + Sbjct: 231 CGSGSLLLKFAKVLGKENVRQG------FYGQEINLTTYNLCRINMFLHDINYN-----H 279 Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G+TL+ + F +SNPP+ KWE D + + RF P L Sbjct: 280 FDIAHGNTLTDPKHFDDEPFDAIVSNPPYSIKWEGDSNPI-----LINDPRFSPAGVLAP 334 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F MH+ L G AAIV L+ G A E +IR++L++N+ ++ + Sbjct: 335 KSKADLAFTMHMLAWLSTS----GTAAIVEFPGVLYRGGA---EQKIRKYLIDNNYVDCV 387 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP+DLFF T IAT + +L K K I+A+ + G K ++D+ Sbjct: 388 IQLPSDLFFGTTIATCIIVLKKSK---IDNKTLFIDASKEFV---RAGNK-NKLSDENIN 440 Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +ILD +++R + ++ S+++D + ++ + + E + ++ Sbjct: 441 KILDAFLNRNDIEYFSKLVDNTDISKNDYNIAVSSYVTVEDTREIIDIKELNKKISEIVK 500 Query: 510 LHQSFWLDI 518 ++I Sbjct: 501 RQNELRIEI 509 >gi|168698315|ref|ZP_02730592.1| type I restriction-modification system specificity subunit [Gemmata obscuriglobus UQM 2246] Length = 521 Score = 289 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 107/509 (21%), Positives = 185/509 (36%), Gaps = 71/509 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + + L G + + +L ++ + Sbjct: 1 MALKKSELYSSLWSSCDALRGGMDASQYKDYVLFMLFIKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ G F + N+ I +N F D DF+ Sbjct: 45 YADNPFPPIKIPEGARFKDMVALKGKPDIGDQINKNVLGPIGK--ENGID-FGDLDFNDA 101 Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAED 176 A+L L + F L D ++ + YE+L+R F +E + Sbjct: 102 -AKLGSGKEMVDRLTTLVAIFEDKRLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQ 160 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V + +L D T+YDPTCG+G L + + Sbjct: 161 FYTPAEVSRIIAQVLGIRDA-----KTSANTTVYDPTCGSGSLLLKVAD---------EA 206 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 +GQE + T + M++ + I QG+TL+ F K F Sbjct: 207 RTKPTLYGQEKDAATSGLARMNMILH-------DNAGALIVQGNTLTDPKFKDGDALKTF 259 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF K + + + RF G P G +L+H+ L+ Sbjct: 260 DYVVANPPFSDK----RWSTGLDPLKDTYERFQHFGAPPAKQGDYAYLLHIVRSLKST-- 313 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GR A +L LF G A E+EIR+ L+ I+ I+ LP +LF+ T I + ++ Sbjct: 314 --GRGACILPHGVLFRGNA---EAEIRKKLVAKRYIKGIIGLPANLFYGTGIPACIIVID 368 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY 470 + R G V +I+A+ + +G K R + +I+D + R KFSR++ + Sbjct: 369 KQDAAARAG-VFMIDASAGFM---KDGPKNR-LRARDIHKIVDAFTQGRTIPKFSRLVPF 423 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLE 499 + P + + L +E Sbjct: 424 EEIEKNDFNLNLPRYIDSQ-EAEDLQNIE 451 >gi|254786393|ref|YP_003073822.1| type I restriction-modification system, M subunit [Teredinibacter turnerae T7901] gi|237686117|gb|ACR13381.1| type I restriction-modification system, M subunit [Teredinibacter turnerae T7901] Length = 535 Score = 289 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 118/576 (20%), Positives = 209/576 (36%), Gaps = 88/576 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 MT+ L +W A+ L G DF +L F LR L E Sbjct: 1 MTK--EQLNQLGKTLWDIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEQAAKKELGRDY 58 Query: 50 --PTRSAVREK----YLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRN 98 P + R Y D E +++ + +F +S ++ T+ + Sbjct: 59 PKPEKDDRRAPLAIWYQNNPADIADFEKQMRLKTHYVIEPAFLWSSVAEMARTQHTDLLD 118 Query: 99 NLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 L YI SF+ + +F + + S +L ++ L I + + + Sbjct: 119 TLWKGFKYIEEKSFNSTFQGLFSEINLHS--EKLGKKPADRNAKLCAIIQKIAE-GISQF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + YE+LI +F + + A +F TP+ + + + ++ I+ Sbjct: 176 STDTDILGDAYEYLIGQFAAGSGKKAGEFYTPQPISQILSEIVTLDSQEPATGKKKKIKQ 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + I +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRKQL-------GPHGIGKIYGQEKNITTYNLARMNMLLHGVK--- 285 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL D +F ++NPPF +W + GE Sbjct: 286 --DTEFEIHHGDTLENDWDILNEMNPAKKMQFDAVVANPPFSLRWSPTEA-------LGE 336 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L G AI+L LF G A E IR Sbjct: 337 DFRFKNYGLAPKSAADFAFLLHGFHFLSDD----GVMAIILPHGVLFRGGA---EERIRT 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ ++ LP +LFF T I + +L K + V INA + + GK Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKRCK---KSDDVLFINAAEHFEK----GK 442 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 ++ + D+ +I+D Y R+ + RR+ + + + L+ + Sbjct: 443 RQNYLEDEHIAKIIDCYQFRKEEERYA---------RRVPMDEIKKNDYNLNISRYVSTA 493 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 L+ +H S + + + + Sbjct: 494 KPEEKIDLAKVHNSLVDLEGEIKLATKKHNKFLKEL 529 >gi|323340759|ref|ZP_08081011.1| type I restriction-modification system DNA-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091882|gb|EFZ34502.1| type I restriction-modification system DNA-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 556 Score = 289 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 108/511 (21%), Positives = 188/511 (36%), Gaps = 78/511 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-------------CALEPTR 52 +A + N IW A +L G+ +++ IL F R L Sbjct: 2 STAEDIKNKIWAMANELRGNMDASEYRDYILGFMFYRFLSEHQLNWQSENEFPDLAGKKL 61 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTR-----NNLESYIAS 106 + ++Y + E +A Y ++ ++ + + Sbjct: 62 EKINQRYAKEAIGDDLTEYLKDIADALGYAIEPKFTWISIVERVNDRSFAPSEFQEMFDK 121 Query: 107 FSDNAK----------AIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVP 151 F++NAK +F D + + +RL A L I + IE D Sbjct: 122 FANNAKLNPNAVNDFTGVFSDINLGN--SRLGDSTNVRAKTLLDIVNLVNEIEYK-DEAG 178 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 ++ +IYE+LI F + +F TP V + ++ D + +YD Sbjct: 179 HDILGDIYEYLIAEFAGNAGKKGGEFFTPHQVSLVLAKIIAANMDPEIEHPE-----VYD 233 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 CG+G L + + + + +GQEL + + +++ ++ Sbjct: 234 FACGSGSLLLTVEDELQ--IPGSQKRRRVRYYGQELNTTNYNMARMNLMMHGVDYQMM-- 289 Query: 272 LSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 +++ TL D G F ++NPP+ +W+ + + + Sbjct: 290 ---DLRNADTLENDWPDGVGNDNIDHPHFFDAVVANPPYSSRWDNSANKI-------KDA 339 Query: 323 RFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 RF GL + FL+H L N G AIVL LF G A E +IR+ L Sbjct: 340 RFKDYGLAPKTKADYAFLLHGLYHL----NSRGTMAIVLPHGVLFRGNA---EGKIRKAL 392 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 LE + I+AI+ LP LFF T I T + +L KT + V I+A+ + KK+ Sbjct: 393 LEKNQIDAIIGLPAGLFFSTGIPTIIMVLKKNKTNK---DVLFIDASGEDHYEK--IKKQ 447 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + ++ I+D Y RE+ + Sbjct: 448 NFLREEDINLIIDTYKKREDVDKYAHVASID 478 >gi|153811904|ref|ZP_01964572.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174] gi|149832038|gb|EDM87123.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174] Length = 523 Score = 289 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 98/554 (17%), Positives = 205/554 (37%), Gaps = 70/554 (12%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ E R+ + + G Sbjct: 17 LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH----GEKYADMKPFY 72 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E + ++++ I + K + +RL Sbjct: 73 TQENVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 128 Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + + I D + ++ +YE+ + +F +G +F TP+ +V+L Sbjct: 129 HIDTAKLASLLDEINRINT--DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 186 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L D LYDP CG+GG ++ V + K + +GQE Sbjct: 187 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + IR + ++ + +T + D + + ++NPPF Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADFIMANPPFN---- 282 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + E++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 283 --QKQWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 336 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416 + E +IR+ L+EN L+EAI+ LP +LF+ T+I+ LW+L+ K Sbjct: 337 SDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQNGKL 393 Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471 R ++ ++ + + K + ++ R ++ +Y + + + + Sbjct: 394 KRYRNREDEILFMDLRQMGSPYEK---KYIELTEEDRAKVTSVYHNWQQEGYEETYENVP 450 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 F Y F L + +S ++ + ++Q+ Sbjct: 451 EFCYSA-SFDEVKEKGFTLVPSRYIEFVNRDENIDFDTKMRSLQGELKELLVQEEKSKSD 509 Query: 532 AESFVKESIKSNEA 545 + KE E Sbjct: 510 LLAVFKELGYEIEL 523 >gi|289423461|ref|ZP_06425263.1| type I restriction-modification system, M subunit [Peptostreptococcus anaerobius 653-L] gi|289156095|gb|EFD04758.1| type I restriction-modification system, M subunit [Peptostreptococcus anaerobius 653-L] Length = 535 Score = 289 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 113/573 (19%), Positives = 208/573 (36%), Gaps = 87/573 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--- 60 S+ + +W A +L G+ ++F IL F R L + +Y Sbjct: 1 MDNKVQSITSKLWAMANELRGNMDASEFKNYILAFMFYRYLS----EHQENYMVEYGIID 56 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTR-----NNLESY 103 + +A Y + +L + ++ + Sbjct: 57 SEDGMSNNEVYKRDSAGDLDTFIKDIADELGYAIYPDDTWESLCNKIDEGKIVPSDYQKL 116 Query: 104 IASFSDNAK----------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 + +F++NA+ +F D + ++L +A L I K +E + Sbjct: 117 LDNFNNNARINERAEEDFSGVFNDINLGD--SKLGASATARARSLNNIVKLVDEVEYKGE 174 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 D + IYE+LI +F + + +F TP V + ++ + + Sbjct: 175 DGKDI-LGEIYEYLIGQFAASAGKKGGEFYTPHQVSQILAKIVTTG-----RVASKKTFN 228 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 LYDPT G+G L V D + +GQEL T+ + +++ +E Sbjct: 229 LYDPTMGSGSLLLT----VRDELPGGDRVGAMDFYGQELNTTTYNLARMNLMMHGVEYKN 284 Query: 269 RRDLSKNIQQGSTLSKD---------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 ++ G TL +D K F ++NPP+ KW+ ++ ++ NG Sbjct: 285 MS-----LKNGDTLEEDWPIDTDKNGKMEPKWFDAVVANPPYSAKWDNNERKIKDPRFNG 339 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 L S F++H L+ G AIVL LF G A E IR+ Sbjct: 340 Y-----GKLAPASKADFAFILHSVYHLKED----GTMAIVLPHGVLFRGAA---EGVIRK 387 Query: 380 WLLEND-LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 L+E D ++A++ LP +LF+ T+I T + + +T V I+A+ + G Sbjct: 388 TLIEKDNYLDAVIGLPANLFYGTSIPTTILVFKKDRTARGVSDVLFIDASSDFVK----G 443 Query: 439 KKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 K + + D+ +I+ Y R+ K+S + + P ++ Sbjct: 444 KNQNTLTDEFIDKIVSTYRYRKAIDKYSYVASLDEVKENDYNLNIP---RYVDTFEEEEP 500 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 ++ I KL + +M+Q+ G Sbjct: 501 VDL-IAVSKLIEEDNKEIAKLESEIMEQLRILG 532 >gi|254172724|ref|ZP_04879399.1| type I restriction-modification enzyme, M subunit [Thermococcus sp. AM4] gi|214033653|gb|EEB74480.1| type I restriction-modification enzyme, M subunit [Thermococcus sp. AM4] Length = 523 Score = 289 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 118/541 (21%), Positives = 222/541 (41%), Gaps = 49/541 (9%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LA 61 + L + K A+ + + IL L+RL E +K Sbjct: 17 KALTREELERVLKKAADLIRTRVD---YK-YILLLLFLKRLSDEWEKEFEEYVKKLMEEG 72 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASF---SDNAKAIF 115 + + Y+ EY L + NL + + N + + Sbjct: 73 LDRKTAEELALQDKEAYTINYPPEYLWRKLREKDIENLPQNLSQALKKLAELNPNLRGVV 132 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + FDF + + A +L ++ + FSG+ L V+ + YE ++R F + ++ Sbjct: 133 DRFDFMEFMLHRDNAEILRQLFELFSGLNL--KNASPDVLGDAYEWILRYFAPQKAKE-G 189 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TPR+V+ L +L P +YDP G+GG L A +V + + Sbjct: 190 EVYTPREVIRLLVEIL----------KPKPGEEVYDPAMGSGGMLIGAYLYVKEKHGESE 239 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291 + +GQE+ P T+A+ M++ ++ S + G TL + F KR Sbjct: 240 AKKLF-LYGQEVNPTTYALAEMNMILHGIK-------SPKLAVGDTLLRPAFKEGNKLKR 291 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F+ ++NPP+ + + + E K RF G P + ++ H+ L + Sbjct: 292 FNVVIANPPWNQDGYGEATLKKAEFKEE---RFKYGYPPNNSADWAWIQHM---LASARD 345 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GR IV+ + LF G A E +IR +L++DL+EA++ LP LF+ T + I + Sbjct: 346 EDGRVGIVIDNGALFRGGA---EKKIRAKVLKDDLVEAVILLPEKLFYNTGAPGAIMIFN 402 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470 K ERRGKV INA+ + +K + D R+I+D + E+ + F+R+++ Sbjct: 403 RNKPTERRGKVLFINASQEYEKHPEV-RKLNRLGDGHIRKIVDAFEKFEDVEGFARVVEL 461 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 + L + F +++ ++A+ K + + ++ ++++ +G Sbjct: 462 DEIKENDHNLNVTLYV-FPMEEEEEIDVKAEWEELKRINEELAKVDEKIEGYLKELGYWG 520 Query: 531 W 531 Sbjct: 521 K 521 >gi|262383640|ref|ZP_06076776.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294538|gb|EEY82470.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 530 Score = 289 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 96/499 (19%), Positives = 193/499 (38%), Gaps = 69/499 (13%) Query: 1 MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M + + + + +WK + L G + +++ V+L L+ E R + Sbjct: 1 MAKKSINKKDNLPMEEVLWKACDALRGSIEPSEYKHVVLSLIFLKYAGFHFEKRRQEIV- 59 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDN 110 G + A FY L + + N+ S I + Sbjct: 60 ---NDGLEDFVDNVEFYAAKNVFYLPETARWPYLKENSKQPNIASIVDKALSDIEKENKP 116 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169 + + +SS +A L + G + ++ + ++ +YE+ + +F + Sbjct: 117 LRGALPNNYYSSLG---IEAEKLGSLLDKIDGFDTILESADGNDIIGRVYEYFLSKFAIK 173 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 +G +F TP+ +V+L ++ +YDP CG+GG +M V Sbjct: 174 EGKGKGEFYTPKTIVNLIAEMI-----------EPYEGKIYDPCCGSGGMFVQSMKFVES 222 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + + + +GQE T + + IR + +D + +T + D Sbjct: 223 HHGNRRK---VSVYGQEYTKTTFKLAKMNLAIRGIAADLGDYAA------NTFTDDRHKD 273 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLEL 348 + + ++NPPF + +++ + R+ G +P S+ + +++++ +KL Sbjct: 274 LKADFIMANPPFN------QKDWRADNQLTDDPRWDGYDVPPTSNANYAWILNMVSKL-- 325 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 + G A +L++ L A E EIRR ++E L+EAIV LP +LF+ T+I+ LW Sbjct: 326 --SSNGVAGFILANGAL---SADGTEGEIRRKMIERGLVEAIVILPRNLFYSTDISVTLW 380 Query: 409 ILSNRKT-------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 I++ K +R ++ I+ + K D+ R++ D Sbjct: 381 IINANKKGRLVNRNGEDIHYRDREKEILFIDMRQMGEPFEK---KYVRFTDEDIRKVADT 437 Query: 456 YVSRE-NGKFSRMLDYRTF 473 Y + + G D F Sbjct: 438 YHNWQREGHTETYTDIPEF 456 >gi|315152687|gb|EFT96703.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0031] Length = 531 Score = 289 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 103/544 (18%), Positives = 209/544 (38%), Gaps = 69/544 (12%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y + L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T+ + +++ ++++ N++ G T Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ W D ++ R+G L S FL Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + + ++ + + + P + ++ + + +K+ ++ Sbjct: 444 KGVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKEL 503 Query: 519 LKPM 522 L+ + Sbjct: 504 LEAI 507 >gi|77165284|ref|YP_343809.1| hypothetical protein Noc_1809 [Nitrosococcus oceani ATCC 19707] gi|254434165|ref|ZP_05047673.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27] gi|76883598|gb|ABA58279.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090498|gb|EDZ67769.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27] Length = 849 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 155/473 (32%), Gaps = 93/473 (19%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + SL N +WK A+ L + ++ V+L L+ + A E + + + Sbjct: 1 MNDTEQQFLKSLDNKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEQLLALF 60 Query: 60 ------------LAFGGSNIDLESFVKVAG--------YSFYNTSEYSLSTLGSTNTR-- 97 + G ++ F+ +T+ Sbjct: 61 KDESNDIYYLSPEDYDGDADYQQALRDELEILDYYREANVFWVPKAARWNTVKEKAVLPV 120 Query: 98 ----------------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135 +N I + + I + +LE LL Sbjct: 121 GTVLWQDDAGNDVKLRSVSWLMDNALEAIEKSNAKLRGILNRI----SQYQLENEKLLG- 175 Query: 136 ICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + FS ++ ++YE+ + +F + + TP+ +V L Sbjct: 176 LINTFSDTSFTKPVYGGEKLHLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLI 235 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVP 242 +L +YDP G+GGF + + + + + Sbjct: 236 VEML-----------EPYSGRVYDPAMGSGGFFVSSDKFIEEHAKEQHYDPAEQKKHISV 284 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE P T + M IR ++ + + + T D R + ++NPPF Sbjct: 285 YGQESNPTTWKLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFN 338 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + R+ G P + + ++ H+ + L G A ++ + Sbjct: 339 MK-------DWWSESLADDARWQYGTPPKGNANFAWMQHMIHHLAPT---GSMALLLANG 388 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 S + E +IR+ L+E DL+E +VALP LF T I +W L+ K Sbjct: 389 SM---SAHTNNEGKIRQRLIEEDLVECMVALPGQLFTNTQIPACIWFLTKDKA 438 >gi|298253166|ref|ZP_06976958.1| type I restriction system adenine methylase (hsdM) [Gardnerella vaginalis 5-1] gi|297532561|gb|EFH71447.1| type I restriction system adenine methylase (hsdM) [Gardnerella vaginalis 5-1] Length = 561 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 111/565 (19%), Positives = 206/565 (36%), Gaps = 72/565 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREK- 58 T A L IWK A+DL G DF +L R + L + + Sbjct: 30 TRKEEERAELHRTIWKIADDLRGSVDGWDFKAYVLCTMFYRYISENLCDYINKDEHESEG 89 Query: 59 ------YLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIA------ 105 Y + + ++ F+ SE + L + +NL ++ Sbjct: 90 GDPDFDYAKISDEDAEPLRSEMISEKGFFILPSELFCNVLKNAPQDSNLNETLSRVFRNI 149 Query: 106 -------SFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHP-DTVPD 152 S + K +F D+D ++ +L K+ + S ++L + Sbjct: 150 EASSQGTDSSGDFKGLFSDYDVNNI--KLADTVEGRNKRFVKLLQVISEMKLGSVNNNVI 207 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + S + ++ TP +V L T L I ++YDP Sbjct: 208 EAFGDAYEYLMGLYASNAGKSGGEYFTPAEVSMLLTRLGTTGK--------SSISSVYDP 259 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + + +GQE ++ +C M + + + Sbjct: 260 ACGSGSLLLKTKKVLGIENINGG------FYGQEKNVTSYNLCRMNMFLHDVNFNKFE-- 311 Query: 273 SKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 I G TL K+F +SNPP+ WE D + + RF P L Sbjct: 312 ---ITCGDTLINPQIDANKKFELVVSNPPYSTSWEGDSNPLMIN-----DPRFAPAGVLA 363 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S M F++H L G AAIV ++ G A E +IR++L+E++ ++ Sbjct: 364 PKSKADMAFVLHCLAHLAED----GAAAIVCFPGIMYRGGA---EQKIRQYLIEHNAVDC 416 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP++LFF T+IAT + +L K + + ++A+ + N ++D+ Sbjct: 417 VIQLPSNLFFGTSIATCIMVLRKNKQNDTS--ILFVDASQQFVKSTNS----NKLSDENI 470 Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 QI+ Y SR++ + + + + + + + + E + + Sbjct: 471 EQIVKWYTSRQDVEHIAHVASLEEVESNKYNLSVSTYVEVEDTREKINITELNAQIASVC 530 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAE 533 Q I K + + + Sbjct: 531 AREQELREQIEKIVSEIEAGSVNFD 555 >gi|160887311|ref|ZP_02068314.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483] gi|260171380|ref|ZP_05757792.1| Type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2] gi|315919693|ref|ZP_07915933.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2] gi|156107722|gb|EDO09467.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483] gi|313693568|gb|EFS30403.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2] Length = 514 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 111/557 (19%), Positives = 213/557 (38%), Gaps = 76/557 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58 M+E L + +W A L G+ +DF L F + L +E + + E+ Sbjct: 1 MSEEL--QQKLRSQLWTVANTLRGNMSASDFMYFTLGFIFYKYLSEKIELYANEILEEDH 58 Query: 59 ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASF 107 + + ++ EY ST+ N +LE + Sbjct: 59 ITFKEVWNGKDEELKQDVKEECIQNLGYFIEPEYLYSTIIELISKKENILPSLERSLKKI 118 Query: 108 SDNAKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVM 155 D+ + DF + L +K L+ + +GI+ D + Sbjct: 119 EDSTIGQDSEDDFGGLFSDLDLASPKLGKTADDKNKLISDVLIALNGIDFGLQEAGDIDI 178 Query: 156 -SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE++I +F + + A +F TP++V + +++ ++ ++DPTC Sbjct: 179 LGDAYEYMISQFAAGAGKKAGEFYTPQEVSQILAEIVITGKV--------RLKDVFDPTC 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L K GQE P T +C ML+ ++ + Sbjct: 231 GSGSLLL----------RTAKSGKADSIFGQEKNPTTFNLCRMNMLLHGVKYN-----DF 275 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 +IQ G TL D F ++F ++NPPF W + RF L S Sbjct: 276 DIQNGDTLEADAFGDRQFDAVVANPPFSADWTAADKFNNDD-------RFSKAGVLAPRS 328 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIV 391 F++H+ L N GG A V LF G A E +IR++L+E + I+AI+ Sbjct: 329 KADYAFILHMIYHL----NDGGTMACVAPHGVLFRGAA---EGKIRQFLIEKKNYIDAII 381 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP ++F+ T+I T + ++ +K + + I+A+ + ++ + + + ++ Sbjct: 382 GLPANIFYGTSIPTCILVI--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPEHIQK 435 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D Y R+ + +S + + P R ++ + A +T K Sbjct: 436 IIDTYRERKEIEKYSHCATLQEVKENDYNLNIP-RYVDTFEEEEEIDIHAVMTEIKELEA 494 Query: 511 HQSFWLDILKPMMQQIY 527 ++ + ++++ Sbjct: 495 KRAELDKQIDVYLKELG 511 >gi|311747174|ref|ZP_07720959.1| type I restriction-modification system, M subunit [Algoriphagus sp. PR1] gi|126578883|gb|EAZ83047.1| type I restriction-modification system, M subunit [Algoriphagus sp. PR1] Length = 802 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 105/500 (21%), Positives = 192/500 (38%), Gaps = 72/500 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKSELYSSLWASCDELRGGMDASQYKDYVLVMLFIKYISDKW--------------- 45 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + G SF + L T+ + + I + A + + DF+ Sbjct: 46 -AGQPFAPITIPEGASFK-----DMIALKGKTDIGDQINKKIIAPLKEANNLSDMPDFND 99 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 + +L L + F EL D ++ + YE+L+ F +E + Sbjct: 100 -VNKLGDGKEMVDRLSNLITIFQKKELDFSKNRAEGDDILGDAYEYLMMHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ D T+YDPTCG+G L + Sbjct: 159 QFYTPAEVSRIMAMIIGISQD-----QTNANTTVYDPTCGSGSLLLRIGSAAKT------ 207 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291 + +GQE + T A+ M++ S I+QG+TL+ LF K+ Sbjct: 208 ---KVTLYGQEKDSATSALSRMNMILH-------DYPSAEIKQGNTLANPLFLEDGKMKQ 257 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPP 350 F Y ++NPPF K + ++ + RF G G+P +G +L+H+ L+ Sbjct: 258 FDYVVANPPFSDKRWSNGLSIPND---EPNNRFAGFGVPPSKNGDFAYLLHIVRSLKRNA 314 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G AI+L LF G A E+EIR L++ I+ I+ LP +LF+ T I + ++ Sbjct: 315 KG----AIILPHGVLFRGNA---EAEIRTNLIKKGYIKGIIGLPANLFYGTGIPACIILI 367 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLD 469 R+ V +++A+ + +G K R + + R I D++ + E +SRM+ Sbjct: 368 DKENALNRKA-VFMVDASKGYI---KDGNKNR-LREQDIRNITDVFNAQFEVPGYSRMVS 422 Query: 470 YRTFGYRRIKVLRPLRMSFI 489 + P + Sbjct: 423 KHEIEQNEYNLNLPRYIDSQ 442 >gi|262369882|ref|ZP_06063209.1| N-6 DNA methylase [Acinetobacter johnsonii SH046] gi|262314921|gb|EEY95961.1| N-6 DNA methylase [Acinetobacter johnsonii SH046] Length = 576 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 94/524 (17%), Positives = 168/524 (32%), Gaps = 105/524 (20%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L + +WK A+ L ++ ++L L+ + A + +S ++E + NI Sbjct: 9 LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68 Query: 68 -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTN----------- 95 D + F+ S + Sbjct: 69 YYMPRDQYDSEEEYQQSIADELEILDYYQEKNVFWVPKAGRWSNIRDAAALPIGSIIWQD 128 Query: 96 -------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 +N I + K I L + FS Sbjct: 129 EQGQDVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183 Query: 143 IEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 + ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 184 TSFTQPEYNGEKLNLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249 P R +YDP G+GGF + + + + +GQE P Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKRYKASEQKKHISIYGQESNP 292 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 T + M IR ++ + + + + +D R + ++NPPF K Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADSFLEDQHPDLRADFVMANPPFNIK----- 341 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 R+ G P + + ++ H+ + L G A ++ + S N Sbjct: 342 --DWWHASLENDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420 E EIR+ L+E DL+E IVALP LF T I +W L+ +K R G Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K I+A +L R D +I + + + G+ Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITNALHAWQQGEN 494 >gi|297625332|ref|YP_003687095.1| Type I restriction-modification system DNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921097|emb|CBL55644.1| Type I restriction-modification system DNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 522 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 117/559 (20%), Positives = 207/559 (37%), Gaps = 70/559 (12%) Query: 1 MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPT 51 MTE T + A L IW+ A DL G DF +L R + L E Sbjct: 1 MTESTKESERAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYINKGEHA 60 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-RNNLESYIASFSDN 110 V Y S+ + V F+ + NL +A+ N Sbjct: 61 AGDVDFNYADLPDSDAAMALRETVDEKGFFILPSDLFENVRHDAPHNPNLNETLANAFAN 120 Query: 111 A-------------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT-VPDR 153 K +F+D D +S + +++ L K+ + L Sbjct: 121 IENSAAGTSSEGDLKGLFDDLDVNSNRLGNSVMQRNEKLVKLLDAVGDLPLGNFGEHTID 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + + YE+L+ + S + +F TP++V L T + + + K +YDP Sbjct: 181 LFGDAYEYLMTMYASSAGKSGGEFYTPQEVSELLTRITVVGKTHVNK--------VYDPA 232 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + G GQE+ T+ +C M + + Sbjct: 233 CGSGSLLLKFGQVLGQGGVRKG------YFGQEINLSTYNLCRINMFLHGIN-----YSD 281 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G TL++ + F +SNPP+ W + + RF P L Sbjct: 282 FDIALGDTLTEPKHWDEEPFEAIVSNPPYSIHWAGNDNPT-----LINDPRFSPAGVLAP 336 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F MH+ + L + G AAIV L+ G A E +IR++L++N+ ++ + Sbjct: 337 KSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---ERKIRKYLIDNNFVDTV 389 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP DLFF T I T + +L K + V ++ + + G K ++D R+ Sbjct: 390 IQLPPDLFFGTTIGTCIIVLKKSKRDNS---VLFVDGSAEFV---RPGNK-NKLDDANRQ 442 Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +ILD + +RE+ + ++++ + + + E + K+ Sbjct: 443 KILDAFTAREDADYFAKLVPASELADNDYNLSVSSYVQPEDTTEKIDITELNARIAKI-V 501 Query: 510 LHQSFWLDILKPMMQQIYP 528 QS + ++ + Sbjct: 502 ARQSELRTQIDAIVADLED 520 >gi|153805905|ref|ZP_01958573.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185] gi|149130582|gb|EDM21788.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185] Length = 506 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 101/489 (20%), Positives = 188/489 (38%), Gaps = 55/489 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L +F+W A L G + + I P +R+ + + + Sbjct: 16 SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGYVCEGGIEYANA 75 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD----------NAKAIFE 116 E +++ + + +G + I + + IF Sbjct: 76 QAQELVIRIPDGAHWRDVRECTENVGQRLVEAFI--AIEQANPGEHADGRVIGGLEGIFG 133 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 D + A++ ++ + ++FS L P M YE+L+ +F + A++ Sbjct: 134 PKDGWTNKAKMPDH-IITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F T R VV L +L P ++YDPTCG+GG L ++ + + Sbjct: 193 FYTNRTVVDLMAEIL----------QPRPGESIYDPTCGSGGMLVKCLDFLR---KKGEP 239 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 + GQE+ T A+ + + +E +I + TL+ F ++F Sbjct: 240 WQGVKVFGQEINALTSAIARMNLYLNGVE-------DFSIVREDTLAYPAFVDGSKLRKF 292 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPP+ K + + N + GR G P S F+ H+ + + Sbjct: 293 DIVLANPPYSIKTWDREAFI-----NDKWGRNFLGTPPQSKADYAFIQHILSSMNDH--- 344 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GR AI+L L E +IR+ L++NDLI+A++++ +LFF + + + I + Sbjct: 345 -GRCAILLPHGVLNR----LIEKDIRQKLIQNDLIDAVISIGKNLFFNSPMEACILICRS 399 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYR 471 K +R+ K+ LI ATDL + ++ I IY N S++++ Sbjct: 400 NKPTDRKNKILLIKATDLVER----KNTESYLTNEHISIITSIYTRYTNIDGRSKIINNN 455 Query: 472 TFGYRRIKV 480 + + Sbjct: 456 EIPDNKYSI 464 >gi|242280199|ref|YP_002992328.1| site-specific DNA-methyltransferase (adenine-specific) [Desulfovibrio salexigens DSM 2638] gi|242123093|gb|ACS80789.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfovibrio salexigens DSM 2638] Length = 548 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 106/572 (18%), Positives = 202/572 (35%), Gaps = 82/572 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--------- 59 L +W A L + V+L L+ + + E + + + + Sbjct: 11 KDLDKRLWDAACKLLPSLDAAVYKHVVLGLVFLKYVGDSFEQRKYELLKNFTNPDHEYFL 70 Query: 60 -LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--------------------TNTRN 98 E V F+ L + Sbjct: 71 EDDEDPMEEIEERDYYVEENVFWVPESGRWVNLMDCAKLNPGEPLPWGDKTFKSVGALID 130 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + + + + K + + G L ++ + I H ++ + Sbjct: 131 DAMTAVEKENPVLKNVLNKDYARLEVPD----GKLSEVMDLINSIPFEHESLKSKDILGH 186 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+ + F + + + TP+ +V+L T +L P R +YDP CG+G Sbjct: 187 VYEYFLGEFAAAEGKKGGQYYTPKSIVNLITEML----------RPYKGR-IYDPACGSG 235 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 GF + V P L +GQE P T + M IR +E D ++ + Sbjct: 236 GFFVSSEEFVETHTHR---PADLAIYGQESNPTTWRLAAMNMAIRGIEYDFGKEPA---- 288 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 T + D RF Y ++NPPF K R+ GLP ++ + Sbjct: 289 --DTFTNDQHGTMRFDYIMANPPFNLKGWGADSLAN-------DVRWKYGLPPDNNANFA 339 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H+ + L G+ ++L++ + A SGE +IRR ++E+DL+E IVALP L Sbjct: 340 WMQHMIHHLSPK----GKMGLLLANGSM--SSATSGEGDIRRKIIEDDLVECIVALPGQL 393 Query: 398 FFRTNIATYLWILSNRKT--------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 F T I +W L+ K+ R G+V I+A + + R + Sbjct: 394 FTNTQIPACIWFLNKDKSNGQNIEDLRNRTGEVLFIDARNCGYMLDRVL--RDFHPEKDI 451 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYR-RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++I +S + G+ S + G+ + + + ++L E Sbjct: 452 QRIAHTLLSWQVGEKSAVKYEDVPGFCAAVTLDDIRKHDYVLTPGRYVGAEE---IEDNG 508 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 P + ++ + +Q+ + ++E++ Sbjct: 509 PPFEEKMGELSTSLYEQMREGERLDKLIRENL 540 >gi|260582497|ref|ZP_05850288.1| type I restriction-modification system, M subunit [Haemophilus influenzae NT127] gi|260094477|gb|EEW78374.1| type I restriction-modification system, M subunit [Haemophilus influenzae NT127] Length = 579 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 93/572 (16%), Positives = 190/572 (33%), Gaps = 86/572 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W +A+ L ++ ++L L+ + + + + Sbjct: 45 LNELDEKLWASADKLRKQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELTDPENPLY 104 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 E+Y + ++ + A F+ + L + N + + Sbjct: 105 FDRTFFDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 162 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVPD 152 F+ AK I + FD +L L + FS P + Sbjct: 163 GKFAGVAKLIDDAFDAIEKDNEKLTGVLQRISGYAVNEDTLRGLIILFSDTHTRPTYNGE 222 Query: 153 -------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++ ++YE+ + F + + TP+ +V L +L Sbjct: 223 PVHLGAKDILGHVYEYFLGHFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 271 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP G+GGF + + + +GQE P T + M IR ++ Sbjct: 272 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 328 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 D + + + ++ K+ + ++NP F D + R+ Sbjct: 329 YDFGKYNA------DSFTQPQHIDKKMDFIMANPHFN-------DKDWWNESLADDPRWA 375 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ D Sbjct: 376 YGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 429 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 L+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 430 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 484 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504 D +I D + + S + + + + F+L E + Sbjct: 485 ADDIAKIADTLHTWQT---SDGYENQAAFCKSTTLEEIKDNDFVLTPGRYVGTAEQEDDG 541 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 542 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 573 >gi|21228396|ref|NP_634318.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] gi|20906869|gb|AAM31990.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] Length = 808 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 101/504 (20%), Positives = 192/504 (38%), Gaps = 73/504 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + ++L G + + +L ++ + Sbjct: 1 MALKKSELYSSLWSSCDELRGGMDASQYKDYVLVLLFIKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++I G SF + L + + + I + NA + + DF+ Sbjct: 45 YADIPFAPINVPEGASFK-----DMVALKGKPDIGDQINKKIIAPLVNANKLSDMPDFND 99 Query: 123 TIARLEKAG----LLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 + A+L L + F L D ++ + YE+L+R F +E + Sbjct: 100 S-AKLGSGKEQVERLTNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + +L + T YDPTCG+G L + + Sbjct: 159 QFYTPAEVSRIIAQILGIRYADTTSST-----TAYDPTCGSGSLLLKVAD---------E 204 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291 + +GQE + T + M++ + I QG+TL+ F K Sbjct: 205 ARTKITLYGQEKDATTSGLARMNMILHN-------NPEALIVQGNTLTDPRFKDRETLKT 257 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPP 350 F Y ++NPPF K + + + RF P G+P G +L+H+ L+ Sbjct: 258 FDYVVANPPFSDK----RWSTGLDPLKDIYERFKPFGIPPAKQGDYAYLLHIVRSLKST- 312 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ A +L LF G E+EIR L+ I+ I+ LP +LF+ T I + ++ Sbjct: 313 ---GKGACILPHGVLFRGN---SEAEIRHALVRKGYIKGIIGLPANLFYGTGIPACIIVI 366 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469 + + R+ + +I+A+ + +G K R + +I+D++ + K+SR++ Sbjct: 367 DKEEAQNRKS-IFMIDASAGFM---KDGPKNR-LRAQDIHRIVDVFTRQAEIPKYSRIVS 421 Query: 470 YRTFGYRRIKVLRPLRMSFILDKT 493 + + P + D+ Sbjct: 422 FEEIEKNEFNLNLPRYIDSQQDED 445 >gi|167740610|ref|ZP_02413384.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei 14] Length = 535 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 206/574 (35%), Gaps = 94/574 (16%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLA------ 61 L +W A+ L G DF +L F LR + E + + Y Sbjct: 7 QKLGKALWAIADQLRGAMNADDFRDYMLAFLFLRYISDNYEAAAKKELGSDYPEAIDGAA 66 Query: 62 --------FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103 G E ++ Y + + + E SY Sbjct: 67 STPLQLWYEGNFEDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDKELLKTLQKGFSY 126 Query: 104 IA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I SF+ + +F + + +S +L E+ L KI + L + + Sbjct: 127 IENESFASTFRGLFSEINLAS--DKLGKTYGERNAQLCKIIGEITK-GLAAFSTDSDTLG 183 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F + + A +F TP+ V + + ++ + ++ D CG+ Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQPVSTILSTIVTLDSQEPATGQRSHLESVMDFACGS 243 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L + + + G +GQE T+ + ML+ ++ D I Sbjct: 244 GSLLLNVRHRMGTHGIGK-------IYGQEKNITTYNLARMNMLLHGVK-----DSEFEI 291 Query: 277 QQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327 G TL D +F ++NPPF +WE + GE RF G Sbjct: 292 FHGDTLFNDWDMLRETNPAKMPKFDAVVANPPFSYRWESTEAM-------GEDVRFKNHG 344 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S FL+H + L+ G AI+L LF A E+ IR LL++ I Sbjct: 345 LAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRSGA---EARIRTKLLKDGHI 397 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + ++ LP +LFF T I + +L K V INA + + GK++ + + Sbjct: 398 DTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEYFEK----GKRQNQLLPE 450 Query: 448 QRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +I+D Y R E ++S RR+ + + F L+ + T Sbjct: 451 HIHKIVDTYKFRKEEARYS----------RRVSMEEIEKHDFNLNISRYVS-----TAEA 495 Query: 507 LSPLHQSFWLDILKPMMQQIYPY-GWAESFVKES 539 + + D L + ++I F+KE Sbjct: 496 DEEIDFAAVHDELVSLGKKIKSATEQHNKFLKEL 529 >gi|11500027|ref|NP_071277.1| type I restriction-modification enzyme, M subunit [Archaeoglobus fulgidus DSM 4304] Length = 508 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 99/543 (18%), Positives = 211/543 (38%), Gaps = 59/543 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 E + L + A+ + + IL L++L + RE Sbjct: 8 EIETTKDELIRACKQAADLIRTRVD---YK-YILVLLFLKKLSDEW---KREYREALKTL 60 Query: 63 GGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKA 113 +D E +A + F +Y+ L + +A + + Sbjct: 61 MEKGVDEEEAKILAKDRSFHKFDYPEKYTWEELRKNVNELPVRLSEALKLLAEKNPELQG 120 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + + DF + +L ++ + FSG+ L D ++ + YE LI F + ++ Sbjct: 121 VVDRLDFLEFTRARDNFDILVQLFELFSGLNLG--RASDSILGDAYEWLIGYFAPQKAKE 178 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 + TP +VV L ++ P + ++YDP G L A ++V + Sbjct: 179 -GEVFTPSEVVELIVRIV----------DPKPMDSVYDPAAGYARMLIRAYDYVKEKYGE 227 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 ++ + +GQE+ P T+A+ ++ ++ N+ G TL F Sbjct: 228 EEVRKLF-LYGQEVNPTTYAIAKMNAIVHGIKDI-------NLVVGDTLKNPRFKEGETF 279 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 ++F ++NPP+ + +++ + E RF G ++ H+ + Sbjct: 280 RKFDIVIANPPWNQDGYGEEELKKAEF---YDERFRYGFTPKQSADWAWIQHMLASAKK- 335 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 + +V+ + LF G E IR+ ++E+DLIE ++ LP LF+ T + I Sbjct: 336 -----KVGVVIDNGCLFRGGK---EGAIRKAVVEDDLIECVILLPEKLFYNTGAPGAIII 387 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468 + +K E R+GK+ INA++ + +K + + +I+ Y ++G F R++ Sbjct: 388 FNKQKPESRKGKILFINASNEYEKHPEV-RKLNRLGEKHIEKIVSAYREFKDGDGFCRVV 446 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 D + L ++ + + ++ W +L + + ++ + + + + Sbjct: 447 DVEEVRKNDYNLNVTL---YVFPQEEVEEIDVAKEWEELRGIERE-IDEVERRIEEYLAE 502 Query: 529 YGW 531 G+ Sbjct: 503 LGF 505 >gi|254181647|ref|ZP_04888244.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei 1655] gi|184212185|gb|EDU09228.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei 1655] Length = 537 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 118/567 (20%), Positives = 206/567 (36%), Gaps = 82/567 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLA------ 61 L +W A+ L G DF +L F LR L E + + Y Sbjct: 7 QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGPDYPQQIDGSV 66 Query: 62 -------FGGSNIDLESFVKVAG-YSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103 + G+ ID+ F K Y + + + SY Sbjct: 67 STPLQLWYEGNLIDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDAALLKTLQRGFSY 126 Query: 104 IA--SFSDNAKAIFEDFDF-SSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 I SF+ + +F + + S + + +E+ L KI K + L + + + Sbjct: 127 IENESFASTFRGLFSEINLASDKLGKTYVERNTRLCKIIKEIAD-GLKQFSTDSDTLGDA 185 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ + + +A++ + ++ D CG+G Sbjct: 186 YEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSNLDSVMDLACGSGS 245 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + + + +GQE T+ + ML+ ++ D I Sbjct: 246 LLLNVRHRMKEAKGTIGK-----IYGQEKNITTYNLARMNMLLHGVK-----DSEFEIFH 295 Query: 279 GSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLP 329 G TL + +F ++NPPF +WE + E RF GL Sbjct: 296 GDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEA-------LSEDVRFKNYGLA 348 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H + L+ G AI+L LF G A E+ IR LL++ I+ Sbjct: 349 PKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---EARIRTKLLKDGHIDT 401 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP +LFF T I + +L K V INA + + GK++ I + Sbjct: 402 VIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GKRQNQILPEHI 454 Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 +I+D Y R E ++S RR+ + + F L+ + L+ Sbjct: 455 DKIIDTYQFRKEEARYS----------RRVGMEEIEKNDFNLNISRYVSTAEAEEQIDLA 504 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESF 535 +H + + + + Sbjct: 505 AVHAELVSLDKQIKLATERHNEFLKEL 531 >gi|60681329|ref|YP_211473.1| putative type I restriction enzyme methylase [Bacteroides fragilis NCTC 9343] gi|60492763|emb|CAH07537.1| putative type I restriction enzyme methylase [Bacteroides fragilis NCTC 9343] Length = 513 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 112/554 (20%), Positives = 210/554 (37%), Gaps = 83/554 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTR 52 M+E L +WK A ++ G+ +DF L + L L+ Sbjct: 1 MSEEQQRI--LKAQLWKMACEMRGNMNASDFMNFGLGLIFYKYLSERIEMFINDQLQNDN 58 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL------------ 100 + R + V + ++ EY STL + Sbjct: 59 TDFRTVWADGNEDIKQELRNVAIEDIGYFLEPEYLFSTLATDAKDGKFILEALGQSFKHI 118 Query: 101 -ESYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 +S +++ S++ + +F+D D +S +L +K L+ + I+ Sbjct: 119 EDSTLSADSEDDFQNLFDDVDLTSV--KLGKTADDKNKLISNLLLALDEIDFCLKDTEID 176 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ + YE++I F + + A +F TP+ V + ++ + +R +YDPT Sbjct: 177 ILGDAYEYMIGEFAAGAGQKAGEFYTPQQVSKVLAQIVTADKE--------RVRNVYDPT 228 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L K +GQE P T+ + ML+ D Sbjct: 229 CGSGSLLLSV----------AKEGFAEFIYGQEKNPTTYNLARMNMLLHNKRYDK----- 273 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 +I+ G TL D F + F ++NPPF +W D + R G L S Sbjct: 274 FDIRSGDTLEDDQFENEVFDAIVANPPFSAQWSADSKFNTDDR----FSRAGA-LAPKSK 328 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392 F++H+ + L GG A V LF G E +IRR+L+E + I+AI+ Sbjct: 329 ADYAFILHMIHHLHD----GGTMACVAPHGVLFRGA---SEGKIRRYLIEAKNYIDAIIG 381 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LF+ T+I T + +L +K + V I+A+ + I+ + ++ + +I Sbjct: 382 LPANLFYGTSIPTCILVL--KKCRKEGDDVLFIDASKGFEKIKT----QNKLSPEHIEKI 435 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLH 511 ++ Y +R + + + F L+ + E + + + Sbjct: 436 VNTYKNRAEIE---------KYSHKATIEEIAENDFNLNIPRYVDTFEEEEEIDIKAVMK 486 Query: 512 QSFWLDILKPMMQQ 525 + L+ + + + Sbjct: 487 EIKMLEAKRSELDR 500 >gi|91775573|ref|YP_545329.1| type I restriction-modification system, M subunit [Methylobacillus flagellatus KT] gi|91709560|gb|ABE49488.1| type I restriction-modification system, M subunit [Methylobacillus flagellatus KT] Length = 540 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 128/587 (21%), Positives = 213/587 (36%), Gaps = 101/587 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 MTE L +W A+ L G DF +L F LR L E Sbjct: 1 MTESEK--QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGTDY 58 Query: 60 -----------------LAFGGSNIDL--ESFVKVAGYSFYNTSE-YSLSTLGSTNTRNN 99 A+ N+D E ++ Y Y + + Sbjct: 59 PDLPSDVLRQTGVNTPLQAWYEENLDDVSEFEKQMRRKVHYVIEPQYLWGNIAEMARTQD 118 Query: 100 LE---------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143 E YI SF+ + +F + + +S +L E+ L KI + Sbjct: 119 DELLHTLQKGFKYIEEESFASTFRGLFSEINLAS--DKLGKTYTERNARLCKIIAEIAK- 175 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 L + + + YE+LI +F + + A +F TP+ + + +A++ Sbjct: 176 GLGQFSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKR 235 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + +++D CG+G L + + I +GQE T+ + ML+ Sbjct: 236 SHLDSVFDFACGSGSLLLNVRRLM-------GPHGIGKIYGQEKNITTYNLARMNMLLHG 288 Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 ++ D I G TL + +F ++NPPF +WE + Sbjct: 289 VK-----DSEFEIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSEA----- 338 Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 GE RF GL S FL+H + L+ G AI+L LF G A E Sbjct: 339 --LGEDVRFKNYGLAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---E 389 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 + IR LL++ I+ ++ LP +LFF T I + +L K V INA + + Sbjct: 390 ARIRTKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFER- 445 Query: 435 RNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 GK++ + + +I+D Y R E ++S RR+ + + F L+ + Sbjct: 446 ---GKRQNQLLPEHIDKIIDTYRYRKEEPRYS----------RRVSMEEIEKNDFNLNIS 492 Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA-ESFVKES 539 T + + + LK + Q+IY F+KE Sbjct: 493 RYVS-----TAITEEEVDLNAVIGQLKAIEQEIYQAKSKHNEFLKEL 534 >gi|300721109|ref|YP_003710377.1| type I restriction-modification enzyme subunit M [Xenorhabdus nematophila ATCC 19061] gi|297627594|emb|CBJ88113.1| Type I restriction-modification enzyme subunit M [Xenorhabdus nematophila ATCC 19061] Length = 819 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 102/475 (21%), Positives = 183/475 (38%), Gaps = 70/475 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + ++L G + + +L ++ + Sbjct: 1 MAIKKNELYSSLWASCDELRGGMDASQYKDYVLTMLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAK--AIFEDFDF 120 N V G SF + L + + I +D + +F+ +F Sbjct: 45 YKNDRYGIIVIPEGASF-----DDMVALKGKKEIGDKINKIIRKLADENRLGTMFDVANF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + +L K L K+ F G++L + D +M + YE+L+R F +E + Sbjct: 100 NDE-EKLGKGKEMIDRLSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ D ++YDPTCG+G L A + + Sbjct: 159 QFYTPAEVSLVLAKIIGINDK------TPRDASVYDPTCGSGSLLLKASD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 P L GQE++ T ++ M++ ESD N D K F + Sbjct: 204 APRGLSIFGQEMDVTTSSLAKMNMILHGHESDVHSIQQGNTIASPVFKDDKGQLKTFDFA 263 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF K + E GRFG G+P +G FL+H+ L+ G+ Sbjct: 264 VANPPFSNKN----WTSGINPREDEFGRFGWGIPPEKNGDYAFLLHILKSLKST----GK 315 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A++L LF G A ES IR L++ I+ I+ LP +LF+ T I + +L + Sbjct: 316 GAVILPHGVLFRGNA---ESLIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVLDKQDA 372 Query: 416 EERR----------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + +I+A+ + +G K R + +I++++ ++ Sbjct: 373 ISADFDAEGKVTRGRDIFMIDASRGFI---KDGNKNR-LRSQDIYKIVEVFTQQK 423 >gi|170025887|ref|YP_001722392.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis YPIII] gi|169752421|gb|ACA69939.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis YPIII] Length = 910 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 98/495 (19%), Positives = 192/495 (38%), Gaps = 64/495 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L TR + + + Sbjct: 49 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 108 Query: 65 SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117 ++ + + S +N+ +++F S K +FE Sbjct: 109 EEDADTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEG 168 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I V+ IYE+L+ +F + Sbjct: 169 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAANA 227 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + Sbjct: 228 GKKAGEFYTPHEVSVLMSNIIAHELKH------KDTIKIYDPTSGSGSLLINIGEAFE-- 279 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + K + + QEL+ T+ + +++R +++ + + G TL +D Sbjct: 280 -KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEEDWPYFD 333 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ + W+ + RF GL + FL Sbjct: 334 DSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 386 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G E +IR+ L+E + I+ ++ LP ++FF Sbjct: 387 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTVIGLPANIFF 439 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + IL K + + V +++A+ + K + ++I D ++R Sbjct: 440 GTGIPTVILIL---KQKRQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVINR 492 Query: 460 EN-GKFSRMLDYRTF 473 E+ KFS+++ +T Sbjct: 493 ESIDKFSQLVSKQTL 507 >gi|313904109|ref|ZP_07837489.1| type I restriction-modification system, M subunit [Eubacterium cellulosolvens 6] gi|313471258|gb|EFR66580.1| type I restriction-modification system, M subunit [Eubacterium cellulosolvens 6] Length = 531 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 104/498 (20%), Positives = 189/498 (37%), Gaps = 68/498 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTR 52 M E L N +W A+ L G ++ +L + L L T Sbjct: 1 MAEK----KDLLNVLWSGADVLRGKMDANEYKTYLLGLVFFKYLSDSYLAKVYDLLNDTT 56 Query: 53 SAVREK----YLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE------ 101 ++ Y S + ++ Y + ++ + N Sbjct: 57 PDSLDEAQSQYEEIMKSEDAEDLLAELRDSMHYTLEPNMTYQSILNDAKNNAFNREKLQA 116 Query: 102 --SYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + I + +F D D S +++ + ++ K G +L V+ Sbjct: 117 AFNRIQESDEIFNGLFSDVDLYSNRLGTGDQKQSDTIAEVIKVLDGADLI--HTSGDVLG 174 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 N YE+LI +F SE + A +F TP + + + + +YDP G+ Sbjct: 175 NAYEYLIGQFASETGKKAGEFYTPHGPAQILCRIAMTGQEN------KKGLQVYDPCMGS 228 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G + N+ + P + +GQEL P T+ + M + + + ++++ Sbjct: 229 GSLMLSCKNYSTE-------PDFIKYYGQELMPSTYNLARMNMFLHGILPE-----NQHL 276 Query: 277 QQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + G TL D T + F NPP+ KW + + E G+ L S Sbjct: 277 RNGDTLDADWPTDEETEFDVVTMNPPYSAKWSAAEGFKQDERFMDYGGK----LAPKSKA 332 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 FL+H L+ G AIVL LF G A E IR+ LLEN I A++ LP Sbjct: 333 DYAFLLHGFYHLKPS----GTMAIVLPHGVLFRGAA---EGTIRQTLLENGSIYAVIGLP 385 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +++F+ T+I T + +L + V I+A++L+ + K+ ++ ++ ++L+ Sbjct: 386 SNMFYNTSIPTCIIVLKKHREGR---DVLFIDASNLYEKDK----KQNVMKEEHISKVLE 438 Query: 455 IYVSRENGKFSRMLDYRT 472 +Y +R + L Sbjct: 439 LYKNRASVDKQAYLASYE 456 >gi|313639655|gb|EFS04450.1| type I restriction-modification system, M subunit [Listeria seeligeri FSL S4-171] Length = 503 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 109/526 (20%), Positives = 187/526 (35%), Gaps = 79/526 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTR-----------SA 54 ++ + +W A +L G + + +L + L LE + Sbjct: 3 TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEIFKANSDCGQVSESEL 62 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103 V E A L+ ++ F + L N E Sbjct: 63 VEEYAKARADYGESLDKMIQGVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122 Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I + SD+ + +F T L E++ + + + F + + V+ Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F E + A +F TPR V + + I ++YDPT G+ Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L H+ + ++ L +GQE T+ + +L+ + + + Sbjct: 233 GSLLLTVKKHLKE-----EVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEKMS-----V 282 Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 + G TLS+D F + NPP+ K + RF Sbjct: 283 KNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFELAGV 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP S G FL+H L G AIVL LF G E EIR+ LL + I Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + I+ LP +LF T I + IL +T V +I+A+ + + K+ ++ + Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRT--ISDPVLVIDASRNFIKV----GKQNVLQEK 443 Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 +I+D YV R +S + + P + I ++ Sbjct: 444 DIARIVDTYVERAEKTGYSHLASREEIIENEYNMNIPRYVEAIDEE 489 >gi|229553103|ref|ZP_04441828.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus rhamnosus LMS2-1] gi|258540282|ref|YP_003174781.1| type I restriction-modification system, M subunit [Lactobacillus rhamnosus Lc 705] gi|229313600|gb|EEN79573.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus rhamnosus LMS2-1] gi|257151958|emb|CAR90930.1| Type I restriction-modification system, M subunit [Lactobacillus rhamnosus Lc 705] Length = 549 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 111/591 (18%), Positives = 210/591 (35%), Gaps = 96/591 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58 M E A + + +W A +L G+ ++F IL F R L + ++ Sbjct: 1 MAEKNI-AQEITSQLWAMANELRGNMDASEFRNYILGFMFYRYLS----EHQERYLQETN 55 Query: 59 --------------YLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRN 98 E ++ Y + + ++L + Sbjct: 56 LFEPEAGQTWNDAFREVASDPESRKEYLEDISSELGYAIAPEQTWASLVQKVNDDKIVPS 115 Query: 99 NLESYIASFSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL 145 + + F+ NA + IF D + + + +A L + + E Sbjct: 116 DYQDLFDDFNKNAALNPNSEADFRGIFADINLGDSRLGSSTTARAKALNGVVRLVDQFEY 175 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 D ++ ++YE+LI +F + A +F TP V + L+ + Sbjct: 176 -NDKQGRDILGDVYEYLIAQFAGNSGKKAGEFYTPHQVSKVLAKLVALGV-----QKDQE 229 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 I T+YDPT G+G L + + ++ HGQEL T + +++ + Sbjct: 230 IFTVYDPTMGSGSLLLTVRDELPATVKA------VMFHGQELNTTTFNLARMNLMMHNV- 282 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + +++ TL D G + F ++NPP+ W+ ++ + Sbjct: 283 ----PYTNMSLRNADTLEDDWPDGVVGGVDSPRSFDAVVANPPYSIHWDNSENKL----- 333 Query: 318 NGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + RF P L S F+ H L N G AIVL LF G A E Sbjct: 334 --KDPRFKPFGALAPKSKADFAFVEHGLYHL----NDTGTMAIVLPHGVLFRGAA---EG 384 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +IR+ ++E + ++A++ +P LFF T I T + + +T + I+A++ + Sbjct: 385 KIRKAIIEKNYLDAVIGMPAGLFFSTGIPTVVLVFKKNRTNR---DIFFIDASNNFEK-- 439 Query: 436 NEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 GK + I+ D +I++ Y RE+ K++ + + P + + Sbjct: 440 --GKNQNILRDSDIDKIIEAYSKREDVDKYAHKAELDEIVENEYNLNIPRYVDTTEPEKP 497 Query: 495 LARL-------EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + + E D KLS D++ + + K Sbjct: 498 IDVVQVVADIKETDKKIAKLSSELAKDIDDLVANNDEAAKQLAALKELFKN 548 >gi|238760352|ref|ZP_04621493.1| Restriction-modification system, modification (Methylase) subunit [Yersinia aldovae ATCC 35236] gi|238701412|gb|EEP93988.1| Restriction-modification system, modification (Methylase) subunit [Yersinia aldovae ATCC 35236] Length = 776 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 101/495 (20%), Positives = 195/495 (39%), Gaps = 64/495 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFG 63 + LA IW++A + + ++ IL F + L L T+ + E A Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPEDIKALN 61 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117 ++D +V+ F Y+ + S +N+ +++F S K +FE Sbjct: 62 EEDVDTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I V+ IYE+L+ +F + Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + Sbjct: 181 GKKAGEFYTPHEVSVLMSNIIAHELKHKNTIK------IYDPTSGSGSLLINIGEAFEQY 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + + QEL+ T+ + +++R +++ + + G TL +D Sbjct: 235 AKN---KDSITYFAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEEDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ + W+ + RF GL + FL Sbjct: 287 DSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G E +IR+ L+E + I+ ++ LP ++FF Sbjct: 340 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTVIGLPANIFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + +L K + + V +++A+ + K + ++I D ++R Sbjct: 393 GTGIPTVILVL---KQKRQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVINR 445 Query: 460 EN-GKFSRMLDYRTF 473 E+ KFS+ + +T Sbjct: 446 ESIDKFSQRVSKQTL 460 >gi|327401776|ref|YP_004342615.1| adenine-specific DNA-methyltransferase [Archaeoglobus veneficus SNP6] gi|327317284|gb|AEA47900.1| Site-specific DNA-methyltransferase (adenine-specific) [Archaeoglobus veneficus SNP6] Length = 509 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 94/516 (18%), Positives = 203/516 (39%), Gaps = 67/516 (12%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG--SNIDLESFVK 74 + A+ + + IL L+RL + + + + G E Sbjct: 22 QAADLIRTRVD---YK-YILVLLFLKRLSDEWKREYNEALKYLIEKEGLSREEAEELAKD 77 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAIFEDFDFSSTIARLEK 129 ++ + F +Y+ L ++ +A + + + + DF + Sbjct: 78 ISFHRFMYPEKYTWEELRKNVNELPVKLSEALKLLAEKNPELQGVVDRLDFLEFTRHRDN 137 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 +L ++ + FSG+ L D ++ + YE ++ F + ++ + TP +VV L Sbjct: 138 FDILVQLFELFSGLNLG--RTSDSILGDAYEWIVGYFAPQKAKE-GEVFTPSEVVELIVK 194 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 ++ +P + ++YDP G L A ++V + + + +GQE+ P Sbjct: 195 IV----------APKPLESVYDPAAGYARMLIRAYDYVKEKYGEEEAKKLF-LYGQEVNP 243 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKW 305 T+A+ ++ ++ N+ G TL F +RF ++NPP+ + Sbjct: 244 TTYAIAKMNAIVHGIKDI-------NLVVGDTLKNPRFKDGESFRRFDVVIANPPWNQDG 296 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + + + E RF G P + ++ H+ + +V+ + L Sbjct: 297 YGEVELKKAEF---YEERFKYGYPPNNSADWAWIQHMLASAKRC------VGVVIDNGCL 347 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 F G E IR+ +L +DL+E ++ LP LF+ T + I + +K EER+ KV I Sbjct: 348 FRGGK---EKTIRKAILMDDLLECVILLPEKLFYNTGAPGAILIFNKQKPEERKSKVLFI 404 Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485 NA++ + +K + D+ +I++ Y ++ + G+ R+ L ++ Sbjct: 405 NASNEYEKHPEV-RKLNRLGDEHIEKIVNAYREFKDVE----------GFCRVVSLDEIK 453 Query: 486 MS--------FILDKTGLARLEADITWRKLSPLHQS 513 + ++ K + ++ W +L + + Sbjct: 454 ENDYNLNVTLYVFPKEEVEEIDVAREWEELKAIEEE 489 >gi|229846817|ref|ZP_04466924.1| type I modification enzyme [Haemophilus influenzae 7P49H1] gi|229810306|gb|EEP46025.1| type I modification enzyme [Haemophilus influenzae 7P49H1] Length = 576 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 86/499 (17%), Positives = 173/499 (34%), Gaps = 83/499 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W +A+ L ++ ++L L+ + + + + Sbjct: 41 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 100 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 E+Y + ++ + A F+ + L + N + + Sbjct: 101 LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 158 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 F+ A+ I + FD +L+ L + FS T Sbjct: 159 GKFAGVARLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 218 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 219 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 267 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 268 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 324 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 325 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 371 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 372 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKGIINA 425 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 +L+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 426 NLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 480 Query: 445 NDDQRRQILDIYVSRENGK 463 D +I + + + Sbjct: 481 TADDIAKIANTLHAWQKSD 499 >gi|153948702|ref|YP_001402490.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis IP 31758] gi|152960197|gb|ABS47658.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis IP 31758] Length = 863 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 105/496 (21%), Positives = 195/496 (39%), Gaps = 66/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L TR + + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFSDNAKAIFE 116 D ++ V G Y + +L S +N R+ L ++ S K +FE Sbjct: 62 EE-DADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE 120 Query: 117 DF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + +++L ++ + + I V+ IYE+L+ +F + Sbjct: 121 GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAAN 179 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP +V L + ++ +YDPT G+G L + Sbjct: 180 AGKKAGEFYTPHEVSVLMSNIIAYELKH------KDTIKIYDPTSGSGSLLINIGEAFE- 232 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286 + K + + QEL+ T+ + +++R +++ + + G TL D Sbjct: 233 --KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPFF 285 Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + +SNPP+ + W+ + RF GL + F Sbjct: 286 DDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAF 338 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G AIVL LF G E +IR+ L+E + I+ I+ LP ++F Sbjct: 339 LLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTIIGLPANIF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T I T + +L K + + V +I+A+ + K + ++I D ++ Sbjct: 392 FGTGIPTVILVL---KQKRQNTDVLVIDASKHFMKE----GKNNKLQASDIKRITDAVIN 444 Query: 459 REN-GKFSRMLDYRTF 473 RE+ KFS+ + +T Sbjct: 445 RESIDKFSQRVSKQTL 460 >gi|157372316|ref|YP_001480305.1| type I restriction-modification system, M subunit [Serratia proteamaculans 568] gi|157324080|gb|ABV43177.1| type I restriction-modification system, M subunit [Serratia proteamaculans 568] Length = 863 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 98/495 (19%), Positives = 190/495 (38%), Gaps = 64/495 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L TR + + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTLN 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFED 117 + ++ + ST +N R+ L ++ S K +F+ Sbjct: 62 EEDTDTVEYVQSNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFDG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I V+ IYE+L+ +F + Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNSNQGYDVLGYIYEYLLEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + Sbjct: 181 GKKAGEFYTPHEVSVLMSNIIAHELKH------KDTIKIYDPTSGSGSLLINIGEAFE-- 232 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + K + QEL+ T+ + +++R +++ + + G TL +D Sbjct: 233 -KYAKNKDSITYFAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEEDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ + W+ + RF GL + FL Sbjct: 287 DSDPQGSYYALHVDAVVSNPPYSQNWDPSFKESDPR-----YSRF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G E +IR+ L+E + IE ++ LP ++FF Sbjct: 340 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIETVIGLPANIFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + +L + + V +++A+ + K + ++I D ++R Sbjct: 393 GTGIPTVILVLRQK---RQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVINR 445 Query: 460 EN-GKFSRMLDYRTF 473 E+ KFS+++ T Sbjct: 446 ESIDKFSQLVSKETL 460 >gi|104774034|ref|YP_619014.1| Type I restriction-modification system, modification subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423115|emb|CAI97854.1| Type I restriction-modification system, modification subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 532 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 116/485 (23%), Positives = 197/485 (40%), Gaps = 70/485 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------ALEPTRSA 54 M E + + L + ++ A+ L ++ K IL + L A + + Sbjct: 1 MAEENSTVS-LQSGLFAAADVLRSKMDANEYKKYILGIVFYKYLSDQQLYKLAEDAGKDD 59 Query: 55 VR-----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------- 101 V E Y LE GY EY+ + + + + + Sbjct: 60 VTLDVAQETYEDNLEEGDLLEEVKSELGYM--IGPEYTYTKILANANNGSFQLNQLKDAF 117 Query: 102 SYIASFSDNAKAIFEDFDF--SSTIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNI 158 + + S ++ + +FEDFD L+K + + K +EL P + + Sbjct: 118 TQLESQGNSFEGLFEDFDLYSRQLGQNLQKQTDTIVGVIKAIGKLELV--NTPGDTLGDA 175 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F SE + A +F TP++V L L L D T+YDP G+G Sbjct: 176 YEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSNGMTVYDPAMGSGS 229 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + +V + + +GQE+ T + M++ R++ ++ ++ Sbjct: 230 LLLNFKKYVPNSS-------RITYYGQEINTSTFNLARMNMILHRVDL-----ANQKLRN 277 Query: 279 GSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDG 334 G TL +D + F + NPP+ +KW+ DK ++ RF G LP S Sbjct: 278 GDTLDEDWPAEEITNFDSVVMNPPYSQKWKADKGFLD-------DPRFSKYGVLPPKSKA 330 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 FL+H L+ G AIVL LF G A E +IR+ LLE I+A++ LP Sbjct: 331 DYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGLP 383 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF T+I T + +L K + V I+A+ + ++ + + + +IL Sbjct: 384 ANLFHSTSIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKILK 436 Query: 455 IYVSR 459 Y R Sbjct: 437 TYEER 441 >gi|253576957|ref|ZP_04854281.1| type I restriction-modification system [Paenibacillus sp. oral taxon 786 str. D14] gi|251843688|gb|EES71712.1| type I restriction-modification system [Paenibacillus sp. oral taxon 786 str. D14] Length = 885 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 105/489 (21%), Positives = 191/489 (39%), Gaps = 83/489 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + + L G + + IL ++ + Sbjct: 10 MAVKKSELYSSLWASCDALRGGMDASQYKDYILTLLFVKYVSDKF--------------- 54 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + G SF + L+ +G+ N ++ IA ++ N + + ++ F+ Sbjct: 55 -KGVAYGDIEVPEGGSF----DDMLALIGNKNIGEEMDKIIAKLAEANNLRGVIDNAHFN 109 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGA 174 +L K L ++ F + D ++ + YE+L+R F +E + Sbjct: 110 DE-DKLGKGKEMVDKLSELLGIFRDLMPDFSRHSADGDDIIGDAYEYLMRNFATESGKSK 168 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V + ++ TLYDP CG+G L A Sbjct: 169 GQFYTPSEVSRILAKVVGIEHAKAGDT------TLYDPACGSGSLLIRAAEA-------- 214 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTG---- 289 P + +GQE E T + +++ + I+ G ST S F Sbjct: 215 -APVDVAIYGQEKEGTTAGLARMNLVLHN-------RATAEIKGGYSTFSDPQFKNPNDD 266 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLAN 344 ++F + ++NPPF K H E GRF G G P +G +L+H+ Sbjct: 267 GALRQFDFVVANPPFSDKNWT--------HGLKEYGRFDGYGDRPPRKNGDFAWLLHVIK 318 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G+AA++L LF G A E+ IR+ L++ LI+ I+ LP +LF+ T I Sbjct: 319 SLK----RNGKAAVILPHGVLFRGNA---EATIRQSLIDKGLIKGIIGLPANLFYGTGIP 371 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463 + ++ +ER G + +I+A+ + +G K R + + +I ++ R Sbjct: 372 ACVIVIDKENADERDG-IFMIDASRDFI---KDGNKNR-LREQDVYKITTVFNQRIELPN 426 Query: 464 FSRMLDYRT 472 +SR + Y Sbjct: 427 YSRFVPYDE 435 >gi|218261758|ref|ZP_03476493.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii DSM 18315] gi|218223772|gb|EEC96422.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii DSM 18315] Length = 553 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 118/593 (19%), Positives = 208/593 (35%), Gaps = 88/593 (14%) Query: 4 FTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLA 61 T L +W+ A+DL G DF +L F LR + +E R + Y Sbjct: 1 MTIKEQHELGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYISDNYIEAARKELGRDYPD 60 Query: 62 FGGSNIDL-------------------ESFVKVAGYSFYNTSE-------YSLSTLGSTN 95 + + ++ Y Y L+ + + Sbjct: 61 KAPEELKEHGVSTPLQLWYGENPADVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDD 120 Query: 96 TRNNLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145 LE YI SF + +F + + +S +L E+ LL K+ + Sbjct: 121 LLKTLEKGFKYIENESFDRAFQGLFSEINLNS--DKLGKNYDERNALLCKVITKIAEGIA 178 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 T ++ + YE+LI F + + A +F TP+ + + + ++ Sbjct: 179 QFST-DTDILGDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTHDPKSGPKKK 237 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + + D CG+G L + + + G +GQE T+ + ML+ ++ Sbjct: 238 LENVLDFACGSGSLLLNVRHRMKANGGSIGK-----IYGQEKNITTYNLARMNMLLHGVK 292 Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 D I G +L D F ++NPPF +WE + + Sbjct: 293 -----DSEFEIHHGDSLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPTE-------E 340 Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G+ RF GL S FL+H + L+ G AI+L LF G A E Sbjct: 341 MGKDFRFKNYGLAPKSAADFAFLLHGFHFLKQD----GTMAIILPHGVLFRGGA---EER 393 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR LL++ I+A++ LP +LFF T I + +L K + V INA+D + Sbjct: 394 IRTKLLKDGNIDAVIGLPANLFFSTGIPVCILVLKKCK---KSDDVLFINASDKENFEK- 449 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 GKK+ + +I+D Y R+ + R + + R + L+ + Sbjct: 450 -GKKQNKLQTKDIDKIIDTYKQRKEEER---------YSRPVSMDEIERNGYNLNISRYV 499 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + + L +++ K + + ++ K Sbjct: 500 SIAKEDVKIDLLQVNKKLIELEGKIADASERHNKFLAELGLPLLTKSKEGETK 552 >gi|326569343|gb|EGE19403.1| putative type I restriction enzyme HindVIIP M protein [Moraxella catarrhalis BC8] Length = 545 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 102/580 (17%), Positives = 192/580 (33%), Gaps = 96/580 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W+ A+ L + ++ ++L F L+ + + R Sbjct: 12 LNKLDQDLWRAADTLRKNLDAANYKHIVLGFIFLKYISDSFNDFRKKHALNLTNPDSETY 71 Query: 56 -------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------------- 95 + +Y I+ + A FY + + + Sbjct: 72 LDPALFDKAEYQQILNDEIEERDYY-TAENIFYVPQQARWENIKDNSKLNAGDELPWGGK 130 Query: 96 ------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 ++ I + K + + + L + FS + Sbjct: 131 FKNVSILLDDAFEAIEQENPKLKGVLQRIAGFGVPDEM-----LRGLIDLFSRTDFTRPM 185 Query: 150 VP--------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 186 YNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML---------- 235 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YDP G+GGF + + + +GQE P T + V M I Sbjct: 236 -EPYSGRVYDPAMGSGGFFVQTDRFIQAHQGNRNA---ISVYGQESNPTTRKLAVMNMAI 291 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 R + D + TL L K+ + ++NPPF E G Sbjct: 292 RGIPFDFGD------KPEDTLLNPLHIDKKMDFVMANPPFNM------KEWWSESLAG-D 338 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 R+ G P + ++ +L H+ L G+ A++L++ + SGE EIR+ + Sbjct: 339 PRWAYGTPPQGNANLAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGEIRKNI 392 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + DL+EA++ALP LF T I +WI++ K +G+V INAT + Sbjct: 393 ITADLVEAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYMKDRV---L 447 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 R D +I D Y + + + F Y + + F+L Sbjct: 448 RDFTVDDIAKISDTYHNWQKQD--GYENIPAFCYSA-TLDEIAKNDFVLTAGRYV---GA 501 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 +T ++ + +Q E + E++K Sbjct: 502 VTEEDDGVPFSDKMQELTACLNEQFKQERELEQQITENLK 541 >gi|296188045|ref|ZP_06856437.1| type I restriction-modification system, M subunit [Clostridium carboxidivorans P7] gi|296047171|gb|EFG86613.1| type I restriction-modification system, M subunit [Clostridium carboxidivorans P7] Length = 529 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 111/590 (18%), Positives = 212/590 (35%), Gaps = 102/590 (17%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTR 52 + + ++ + +W A +L G +++ IL F R L E Sbjct: 1 MSNNLQTITSKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEKYLVGNNVIDVEKG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTN-----TRNNLESYIAS 106 ++ + YL + ++ Y + + +L + ++ ++ + Sbjct: 61 ESINDAYLKQAVGADLDDYLQDISLSLGYAIAPNDTWESLINKINDAQVIPSDYQTIFDN 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ NA + IF D + + + E+A L I K GIE D D Sbjct: 121 FNKNAELNKEAVKDFRGIFNDINLGDSRLGSSTNERAKSLNNIVKLVDGIEYKGDDGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + LYDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTSGVE-----KSDEFFNLYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L + + GQEL T+ + +++ + + + Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHDVSYNNMVLNN 287 Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D G + F ++NPP+ KW+ D+ + + RF Sbjct: 288 A-----DTLESDWPDGPDGKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRF 335 Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L S F++H L N G AIVL LF G A E +IR+ L+ Sbjct: 336 SDYGKLAPASKADYAFILHSIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQTLI 388 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E + ++ ++ LP +LF+ T+I T + + + + + I+A++ + GK + Sbjct: 389 EKNYLDTVIGLPANLFYGTSIPTTILVFKKNRKTK---DILFIDASNDFEK----GKNQN 441 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 +ND+ +I++ + R++ + + F L+ + Sbjct: 442 NLNDENIDKIINTFKERKDVDKYAHVAS---------IEEIKENEFNLNIPRYVDTFEEE 492 Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552 L +++ D E E+ + + K L VK Sbjct: 493 APIDLEEVNKQLEQD-------------NKEIAELEAEINEQLKILGVKI 529 >gi|120556287|ref|YP_960638.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] gi|120326136|gb|ABM20451.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] Length = 570 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 102/609 (16%), Positives = 194/609 (31%), Gaps = 115/609 (18%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-------- 51 M +L + +WK A+ L + ++ V+L L+ + A E Sbjct: 1 MNNTEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEELLERF 60 Query: 52 RSAVREKY----LAFGGSNIDLESFVKVAG--------YSFYNTSEYSLSTLGSTNT--- 96 + + Y + G ++ ++ F+ STL Sbjct: 61 KDQNDDIYYLPPEDYDGHEDYQQALLEELEILDYYREANVFWVPKPARWSTLKEKAVLPV 120 Query: 97 ---------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135 +N I + K I L Sbjct: 121 GTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSNAKLKGILNRISQYQL-----DNDKLLG 175 Query: 136 ICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + FS ++ ++YE+ + +F + + TP+ +V L Sbjct: 176 LINTFSDTSFTRPVFEGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLI 235 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVP 242 +L +YDP G+GGF + + + S + + Sbjct: 236 VEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIEEHASEQHYDAGEQKKHISV 284 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE P T + M IR ++ + + + T D R + ++NPPF Sbjct: 285 YGQESNPTTWRLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFN 338 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + R+ G P + + ++ H+ + L G A ++ + Sbjct: 339 IK-------DWWSESLADDVRWKYGTPPKGNANFGWMQHMLHHLAPT---GSMALLLANG 388 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415 S N E EIR+ L+E DL+E +VALP LF T I +W L+ K Sbjct: 389 SMSSNTNN---EGEIRKRLVEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGMVRNE 445 Query: 416 --EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 +RR + I+A +L + R R +D +I D + + + G+ + Sbjct: 446 KKRDRREEFLFIDARNLGFMRDRVL----RDFTNDDVAKIADTFHAWQRGEGYEDVA--- 498 Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 G+ + + + F+L + + + +Q Sbjct: 499 -GFCKSASLDEIKKHDFVLTPGRYVGAQEQ---EDDGEPFAEKMARLTGQLREQFAESDR 554 Query: 532 AESFVKESI 540 E+ +K ++ Sbjct: 555 LEAEIKRNL 563 >gi|332983076|ref|YP_004464517.1| type I restriction-modification system, M subunit [Mahella australiensis 50-1 BON] gi|332700754|gb|AEE97695.1| type I restriction-modification system, M subunit [Mahella australiensis 50-1 BON] Length = 521 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 105/486 (21%), Positives = 181/486 (37%), Gaps = 70/486 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---------ALEPTRSAVREKY 59 A L IW A +L G DF + +L R + R Sbjct: 11 AELHRTIWNIANNLRGSVDGWDFKQYVLGMLFYRYISENITAYINAGEWAAGRPEFNYAK 70 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAI 114 ++ + E V+ G F+ + + N LE + +A+ Sbjct: 71 ISDAEAEKIREDLVEAKG--FFILPSELFENVRARAKNDENLNETLERVFRNIEASAQGT 128 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + DF L+ + L ++ + + ++L + YE+ Sbjct: 129 ESEPDFKGLFDDLDVNSNKLGSTVAKRNEKLAQLLDSIAEMKLGDYKDNTIDAFGDAYEY 188 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + S + ++ TP++V L T L L + K +YDP CG+G L Sbjct: 189 LMGMYASNAGKSGGEYYTPQEVSELLTRLTLVGKTEVNK--------VYDPACGSGSLLL 240 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + K L GQE+ T+ +C M + ++ D NI G T Sbjct: 241 KFAKIL------GKDNVRLGFFGQEINITTYNLCRINMFLHDIDYDKF-----NIALGDT 289 Query: 282 LSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L+ + F +SNPP+ W+ D D + RF P L S + F Sbjct: 290 LTDPKHRDNEPFEAIVSNPPYSISWKGDSDPI-----LINDPRFAPAGVLAPKSKADLAF 344 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 +MH L G AAIV ++ G A E +IR++L++N+ I+ I+ LP +LF Sbjct: 345 IMHCLAWL----AANGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNYIDCIIQLPDNLF 397 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+IAT + +L K + I+A+ + N + IL+ + Sbjct: 398 YGTSIATCIMVLKKSKRDNST---LFIDASKEFVKATN----NNKLTQKNIETILNAFKD 450 Query: 459 RENGKF 464 R++ ++ Sbjct: 451 RKDIEY 456 >gi|217980318|ref|YP_002364294.1| N-6 DNA methylase [Shewanella baltica OS223] gi|217500955|gb|ACK48927.1| N-6 DNA methylase [Shewanella baltica OS223] Length = 567 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 95/562 (16%), Positives = 187/562 (33%), Gaps = 97/562 (17%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57 M + L +W A+ L + +L ++ + A + + ++ Sbjct: 1 MNQTEQQFLKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADI 60 Query: 58 ---KYLAFGGSNI-------------DLESFVKVAGYSFYNTSEYSLSTLGST------- 94 ++ + + F+ +E L Sbjct: 61 ANPEHEYYLDPADYSEEELAEEIAIELEQRDFYTEKNVFWLPTESRWQFLQDNGPLVIGG 120 Query: 95 ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 + +N I + K + S I + L ++ Sbjct: 121 AELDINGKAKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSSLKIDQ----AKLNELIN 176 Query: 139 NFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + I H D ++ ++YE+++ +F + F TP +V L ++ Sbjct: 177 LIATIPFVHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMI------ 230 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252 +YDP G+GGF + + ++ + +GQE T Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERHAHEKQVDALTQKHKISIYGQEYNYTTW 285 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M IR L+ D ++ + ST + R + ++NPPF K Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT---- 335 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + RF G P + + ++ H+ + L G +A ++ + S Sbjct: 336 ---GVDDNDPRFKYGQPPSGNANFAWMQHMLHHLAP---EGSQALLLANGSMSSTTNN-- 387 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGKV 422 E IR+ L+ENDLIE +VALP LF T I +W L+ K R+G+V Sbjct: 388 -EGTIRQALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKNPRVDKAGRKLRGRKGEV 446 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480 I+A +L R + + +++ D++ + + G+ + Y G+ + + Sbjct: 447 LFIDARNLGYMKDRV---LRDFSFEDIQKVADVFHAWKTGETVNGVTYEDQAGFCKSATL 503 Query: 481 LRPLRMSFILDKTGLARLEADI 502 + F+L +I Sbjct: 504 AEIAKHDFVLTPGRYVGAADEI 525 >gi|15839317|ref|NP_300005.1| type I restriction-modification system DNA methylase [Xylella fastidiosa 9a5c] gi|9107964|gb|AAF85513.1|AE004079_4 type I restriction-modification system DNA methylase [Xylella fastidiosa 9a5c] Length = 525 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 123/562 (21%), Positives = 217/562 (38%), Gaps = 78/562 (13%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTR 52 M+ A L IW+ A DL G DF +L R + L E Sbjct: 1 MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRA 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL------- 100 Y ++ + V FY + + N L Sbjct: 61 DDPDFDYAQLSDADAESGRAETVKEKGFYILPSELFVRVRAGAKCDDNLNETLSKVFANI 120 Query: 101 -ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELHPD 148 S I S S+ + K +F+D D +S ++L ++ L K+ + + E Sbjct: 121 ERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGGFT 178 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + YE+L++ + S + +F TP++V L T + + + K Sbjct: 179 DNTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK-------- 230 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L N V G +GQE+ T+ +C M + + + Sbjct: 231 VYDPACGSGSLLL---NFVKVLGHDQ---VRRGFYGQEINLTTYNLCRINMFLHNVNYEK 284 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL+ + F +SNPP+ KW+ D +A+ RF P Sbjct: 285 F-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFAPP 334 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L S + F +H+ + L + G AAIV L+ G A E +IR++L++N+ Sbjct: 335 GILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNN 387 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++A++ LP DLFF T IAT + +L K + ++A+ L G K + Sbjct: 388 YVDAVIQLPADLFFGTTIATCIIVLKKSKRDNAT---LFMDASSLCV---RSGTK-NKLT 440 Query: 446 DDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADI 502 +++ILD + +R++ + F+R++D + ++ + + L DI Sbjct: 441 PAHQKKILDGFTARQDIEHFARLVDNSDIAANGYNIAVSSYIAHADTRESIDIKALNRDI 500 Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524 +D + ++ Sbjct: 501 ARIVARQAELRKQIDAIVADLE 522 >gi|15676726|ref|NP_273871.1| type I restriction enzyme EcoR124II M protein [Neisseria meningitidis MC58] gi|7226064|gb|AAF41241.1| type I restriction enzyme EcoR124II M protein [Neisseria meningitidis MC58] gi|316984502|gb|EFV63470.1| type I restriction-modification system, M subunit [Neisseria meningitidis H44/76] gi|325140020|gb|EGC62549.1| type I restriction-modification system, M subunit [Neisseria meningitidis CU385] Length = 514 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 189/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A+ + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLIEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|332829719|gb|EGK02365.1| type I restriction-modification system, M subunit [Dysgonomonas gadei ATCC BAA-286] Length = 513 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 111/557 (19%), Positives = 202/557 (36%), Gaps = 83/557 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------- 51 M+E L +WK A ++ G+ +DF L + L +E Sbjct: 1 MSEEQQRI--LKAQLWKMACEMRGNMNASDFMNFGLGLIFYKYLSERIEMFINDQLQNDN 58 Query: 52 -------RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS------EYSLSTLGSTNTRN 98 + I+ + Y F S ++ L LG + Sbjct: 59 TDFRTIWTEGDEDIKQELRNVAIEDIGYFLEPKYLFSTLSADAKDGKFILEALGQSFKHI 118 Query: 99 NLESYIASFSDNAKAIFEDFDFSS-TIARL--EKAGLLYKICKNFSGIELHPDTVPDRVM 155 + A D+ + +F+D D +S + + +K L+ + I+ ++ Sbjct: 119 EDSTLSADSEDDFQNLFDDVDLTSAKLGKTADDKNKLISNLLLALDEIDFCLKDTEIDIL 178 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE++I F + + A +F TP+ V + ++ + +R +YDPTCG Sbjct: 179 GDAYEYMIGEFAAGAGQKAGEFYTPQQVSKVLAQIVTADKE--------RVRNVYDPTCG 230 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L K +GQE P T+ + ML+ D Sbjct: 231 SGSLLLSV----------AKEGFAEFIYGQEKNPTTYNLARMNMLLHNKRYDKFE----- 275 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I+ G TL D F + F ++NPPF +W D+ + R G L S Sbjct: 276 IRSGDTLEDDQFESEVFDAIVANPPFSAQWSADRKFNTDDR----FSRAGA-LAPKSKAD 330 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALP 394 F++H+ + L GG A V LF G E +IRR+L+E + I+AI+ LP Sbjct: 331 YAFILHMIHHLHD----GGTMACVAPHGVLFRGA---SEGKIRRYLVETKNYIDAIIGLP 383 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+I T + +L +K + V I+A+ + ++ + + + +I++ Sbjct: 384 ANLFYGTSIPTCILVL--KKCRKEGDDVLFIDASKGFEKVKT----QNKLLPEHINKIVE 437 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 Y R + + + F L+ T+ + + Sbjct: 438 TYKRRAEIE---------KYSHKATIEEIAENDFNLNIPRYV-----DTFEEEEDIDIKA 483 Query: 515 WLDILKPMMQQIYPYGW 531 + +K + Q Sbjct: 484 VMAEIKTLEAQRGELDK 500 >gi|121610476|ref|YP_998283.1| type I restriction-modification system, M subunit [Verminephrobacter eiseniae EF01-2] gi|121555116|gb|ABM59265.1| type I restriction-modification system, M subunit [Verminephrobacter eiseniae EF01-2] Length = 535 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 118/566 (20%), Positives = 202/566 (35%), Gaps = 89/566 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 MTE L + +W A+ L G DF +L F LR L E Sbjct: 1 MTE--QDQKQLGSILWNIADRLRGAMNADDFRDYMLSFLFLRYLSDNYEAATRKELGCDY 58 Query: 50 -----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--- 101 R A + S+ D + + +Y ++ + + Sbjct: 59 PALESEDRRAPLAVWYEQNPSDTDDFERQMRSKTHYVIRPKYLWGSIAEMARTQDKDLLR 118 Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 SYI SF+ +F + + SS +L E+ L I + + L Sbjct: 119 TLQESFSYIENESFASTFDGLFSEINLSS--EKLGKSYTERNAKLCSIIQEIAD-GLTKF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 +V + + YE+LI +F + + A +F TP+ + + +A++ + + Sbjct: 176 SVDKDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISSILSAIVALDSQNPAAGKKKHLNS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + I +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGALLLNVRKQL-------GPNGIGRIYGQEKNITTYNLARMNMLLHGVK--- 285 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL D RF ++NPPF +W + G+ Sbjct: 286 --DSEFEIFHGDTLINDWDMLRESNPAKMPRFDAVVANPPFSYRW-------DPTGAMGD 336 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L+ G AI+L LF G A E IR Sbjct: 337 DVRFKNHGLAPKSAADFAFLLHGFHYLKQE----GVMAIILPHGVLFRGGA---EERIRT 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ ++ LP +LFF T I + +L K V INA + + GK Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GK 442 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 ++ + + +I+D Y R + + + + + L+ + Sbjct: 443 RQNRLLLEHIDKIIDTYRFRNEEERYARC---------VSMEEIEKNDYNLNISRYISTA 493 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQ 525 L+ + +DI K + + Sbjct: 494 QAEEEVDLAA-VNARLVDIEKEIEKA 518 >gi|325200488|gb|ADY95943.1| type I restriction-modification system, M subunit [Neisseria meningitidis H44/76] Length = 513 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 189/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A+ + N ++ ++ +I+ Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLIEEHIAEIVK 439 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 440 LFADKADVPH 449 >gi|126665697|ref|ZP_01736678.1| type I restriction-modification system methylation subunit [Marinobacter sp. ELB17] gi|126629631|gb|EBA00248.1| type I restriction-modification system methylation subunit [Marinobacter sp. ELB17] Length = 570 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 100/565 (17%), Positives = 185/565 (32%), Gaps = 114/565 (20%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------- 49 M +L + +WK A+ L + ++ V+L L+ + A E Sbjct: 1 MHNTEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEELLELF 60 Query: 50 -----------PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-- 96 P EKY +++ + + A F+ +TL Sbjct: 61 KTDSDDNIYYLPREDFDDEKYQQALIEELEVLDYYREA-NVFWVPKPARWNTLKEKAVLP 119 Query: 97 ----------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134 +N I + K I L Sbjct: 120 VGTVLWQDDVGGDVKLRSVSWLIDNALEDIEKSNTKLKGILNRISQYQL-----DNDKLL 174 Query: 135 KICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + FS + ++ ++YE+ + +F + + TP+ +V L Sbjct: 175 GLINTFSDTSFTKPIFEGEKLELQSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTL 234 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILV 241 +L +YDP G+GGF + + S + + Sbjct: 235 IVEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIEQHASEQHYDAAEQKKHIS 283 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQE P T + M IR ++ + + + T D R + ++NPPF Sbjct: 284 VYGQESNPTTWKLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPF 337 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + E R+ G P + + +L H+ + L G A ++ + Sbjct: 338 NIR-------DWWNESLTEDARWKYGTPPKGNANFGWLQHMLHHLAPT---GSMALLLSN 387 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------ 415 S N E EIR+ L+E DL+E +VALP LF T I +W L+ K Sbjct: 388 GSMSSNTNN---EGEIRKRLVEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGAIRN 444 Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 R+ ++ I+A +L + R R ++ +I D + + + G+ + Sbjct: 445 EKKRGRQKELLFIDARNLGFMRDRVL----RDFTNEDIAKIADTFHAWQRGENYEDVA-- 498 Query: 472 TFGYRR-IKVLRPLRMSFILDKTGL 495 G+ + + + + F+L Sbjct: 499 --GFCKSVSLDEIKKHDFVLTPGRY 521 >gi|229176526|ref|ZP_04303955.1| Type I restriction-modification system, M subunit [Bacillus cereus MM3] gi|228606963|gb|EEK64356.1| Type I restriction-modification system, M subunit [Bacillus cereus MM3] Length = 530 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 104/487 (21%), Positives = 199/487 (40%), Gaps = 72/487 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLA-- 61 A L + ++ A++L +++ +L + L L E+Y Sbjct: 1 MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTPE 60 Query: 62 ---------FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111 +I + + Y+ Y + L + +N + + + Sbjct: 61 KQTQLYRDLLADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQ--LNDLNKAF 118 Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158 + +D F+ ++ K+ L ++ K + I++ V+ + Sbjct: 119 IDLSTKYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDIDVL--GHSGDVIGDA 176 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI +F SE + A +F TP +V + + + + +++DPT G+G Sbjct: 177 YEFLIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + + N++ P + HGQEL T+ + +++ ++ + R ++ Sbjct: 231 LMLNIRNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRN 278 Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G TL+KD T + + + L NPP+ KW D ++ R+G L S Sbjct: 279 GDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADF 333 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L+ G AIVL LF G A E IR+ LLE+ I+A++ +P + Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T+I T + IL +T V I+A++ +T +N + ++ + +I++ Y Sbjct: 387 LFFGTSIPTTVIILKKNRTTR---DVLFIDASNEFTKEKN----QNKLSKENIDKIVETY 439 Query: 457 VSRENGK 463 RE+ + Sbjct: 440 KKREDVE 446 >gi|300087356|ref|YP_003757878.1| type I restriction-modification system subunit M [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527089|gb|ADJ25557.1| type I restriction-modification system, M subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 523 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 113/562 (20%), Positives = 202/562 (35%), Gaps = 76/562 (13%) Query: 1 MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSA 54 MT + L IW+ A D+ G DF + +L R + L R Sbjct: 1 MTNHNSTKEQERAALHRTIWQIANDMRGSVDGWDFKQYVLGMLFYRFISENLTSYLNREE 60 Query: 55 VREKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTN-TRNNLESYIA--- 105 R F + + E V FY + NL +A Sbjct: 61 RRSGNQDFDYTRLPDEQAEFGRADTVKEKGFYILPSELFVNVCGKARLDANLNETLATVF 120 Query: 106 ----------SFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DT 149 D+ K +F+D D +T+ + + L ++ + + L Sbjct: 121 RNIENSAKGADSEDDLKGLFDDLDVNSSKLGNTVEK--RNQKLTRLIEAIGELRLGNYSD 178 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + YE L+ + S + +F TP++V L L + K + Sbjct: 179 NTIDAFGDAYEFLMTMYASNAGKSGGEFFTPQEVSELLARLATVGKKEVNK--------V 230 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDP CG+G L + GQE+ T+ +C M + + + Sbjct: 231 YDPACGSGSLLLKFAKILGKENVRIG------FFGQEINITTYNLCRINMFLHDINYNHF 284 Query: 270 RDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 I G TL+ + F +SNPP+ KWE D + + RF P Sbjct: 285 E-----IAHGDTLTDPKHWDDEPFDAIVSNPPYSTKWEGDSNPL-----LINDPRFSPAG 334 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 L S + F MH+ + L G AAIV L+ G A E +IR++L++N+ Sbjct: 335 VLAPKSKADLAFTMHMLSWLSTS----GTAAIVEFPGVLYRGGA---EQKIRKYLIDNNY 387 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+ ++ LP DLFF IAT + +L K + K I+A+ + G + + + Sbjct: 388 IDTVIQLPPDLFFGVTIATCIIVLKKSKKD---NKTLFIDASTEFVR----GGNKNKLTE 440 Query: 447 DQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 D +IL+ + +R + ++ ++++D + + ++ + + ++ Sbjct: 441 DNLAKILEAFTNRTDVEYFAKLVDNKAIEENACNIAVSSYVAQKDTREAID-IQKLNAEI 499 Query: 506 KLSPLHQSFWLDILKPMMQQIY 527 Q+ + ++ I Sbjct: 500 AGIVARQNELRKAIDEIVADIE 521 >gi|52079176|ref|YP_077967.1| Type I restriction modification system protein HsdMI [Bacillus licheniformis ATCC 14580] gi|52784543|ref|YP_090372.1| hypothetical protein BLi00744 [Bacillus licheniformis ATCC 14580] gi|52002387|gb|AAU22329.1| Type I restriction modification system protein HsdMI [Bacillus licheniformis ATCC 14580] gi|52347045|gb|AAU39679.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 530 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 103/487 (21%), Positives = 195/487 (40%), Gaps = 72/487 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKY---- 59 A L + ++ A++L +++ +L + L L + E+Y Sbjct: 1 MAELHSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIAGESLEEYNTQD 60 Query: 60 -------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111 + I + + Y+ Y S L + +N ++ + Sbjct: 61 KQTQLYMESLADEEIKNDLIETLVDTLGYDIEPKYLFSVLANQAKQNTF--HLNDLNKAF 118 Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158 + +D F+ ++ K+ L ++ K + + + V+ + Sbjct: 119 IDLSTKYDQFNGLFDDVDLKSKKLGSDDPQRNITITEVLKKLNDVNVIEHNGD--VIGDA 176 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F SE + A +F TP V + + + + +++DPT G+G Sbjct: 177 YEYLISQFASEAGKKAGEFYTPHQVSDMMARIAAIGQED------KKLFSVFDPTMGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + + N++ P + HGQEL T + +++ + + R ++ Sbjct: 231 LMLNIRNYI-------NYPDSVKYHGQELNTTTFNLAKMNLILHGVNKEDMR-----LRN 278 Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G TL+KD T + + + L NPP+ KW D ++ R+G L S Sbjct: 279 GDTLNKDWPTDEPYTFDAVLMNPPYSAKWSADTTFIDDSR----FNRYG-KLAPKSKADF 333 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L+ G AIVL LF G A E IR+ LLE+ I+A++ +P + Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T+I T + IL ++ V I+A+ + GK + ++ + +I++ Y Sbjct: 387 LFFGTSIPTTVIILKKNRSTR---DVLFIDASKEFIK----GKNQNKLSKENIDKIVETY 439 Query: 457 VSRENGK 463 RE+ + Sbjct: 440 KKREDVE 446 >gi|167912941|ref|ZP_02500032.1| type I restriction-modification system, M subunit [Burkholderia pseudomallei 112] Length = 536 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 115/562 (20%), Positives = 199/562 (35%), Gaps = 82/562 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 MTEF L +W A+ L G DF +L F LR L E Sbjct: 1 MTEFEK--QQLGKILWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGPDY 58 Query: 58 ------------KYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRN--NLES 102 + G + E ++ Y Y + L Sbjct: 59 PTQLDSSVSTPLQLWYEGNLDDVPEFEKQMRRKVHYVIEPQYLWGNIAQMAREQSKYLLD 118 Query: 103 YI---------ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 + SF+ + +F + + +S +L E+ L KI + L Sbjct: 119 TLQKGFGYIETESFASTFRGLFSEINLTS--DKLGKNYDERNARLCKIINEIAK-GLTQF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F + + A +F TP+ + + +A++ + + Sbjct: 176 STDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISSILSAIVTLDGQEPATGQRKHMDS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + + I +GQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRHRM-------GPHGIGKIYGQEKNITTYNLARMNMLLHGVK--- 285 Query: 269 RRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL + + +F ++NPPF +WE + GE Sbjct: 286 --DSEFEIFHGDTLLNEWDMLRETNPAKIPKFDAVVANPPFSYRWESTEA-------LGE 336 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L+ G AI+L LF G E+ IR Sbjct: 337 DVRFKNYGLAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGV---EARIRT 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL++ I+ ++ LP +LFF T I + +L K V INA + + GK Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GK 442 Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 ++ + + +I+D Y R E ++SR + + ++ + Sbjct: 443 RQNQLLPEHINKIIDTYQFRKEEARYSRRVGMEEIE--KKNDFNLNISRYVSTAEAEEEI 500 Query: 499 EADITWRKLSPLHQSFWLDILK 520 + +L L Q + + Sbjct: 501 DLAAVHAELVSLDQKIEMATKQ 522 >gi|325144135|gb|EGC66442.1| type I restriction-modification system, M subunit [Neisseria meningitidis M01-240013] gi|325203906|gb|ADY99359.1| type I restriction-modification system, M subunit [Neisseria meningitidis M01-240355] gi|325206332|gb|ADZ01785.1| type I restriction-modification system, M subunit [Neisseria meningitidis M04-240196] Length = 513 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 189/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + + + +TN + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNVAAKAHQNEELNTNLKEIFTAIESSAS 119 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A+ + N ++ ++ I+ Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIADIVK 439 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 440 LFADKADVPH 449 >gi|256851078|ref|ZP_05556467.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 27-2-CHN] gi|260660504|ref|ZP_05861419.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 115-3-CHN] gi|282933734|ref|ZP_06339089.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 208-1] gi|297205944|ref|ZP_06923339.1| type I site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus jensenii JV-V16] gi|256616140|gb|EEU21328.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 27-2-CHN] gi|260548226|gb|EEX24201.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 115-3-CHN] gi|281302113|gb|EFA94360.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 208-1] gi|297149070|gb|EFH29368.1| type I site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus jensenii JV-V16] Length = 550 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 98/578 (16%), Positives = 211/578 (36%), Gaps = 79/578 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSAV 55 S + +W A +L G+ +++ IL F R L L+ +V Sbjct: 2 SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLVKNDILDIEDGESV 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRNNLESYIASF-- 107 + Y+ + +A Y + + ++L ++ + + F Sbjct: 62 NDAYVREASGEDLTDYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121 Query: 108 ----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 S + + +F D + + ++A + KI + IE + D Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI- 180 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + IYE+LI +F + + +F TP +V + L+ +YDPTC Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLK-----GEPEEFEVYDPTC 235 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L V K P ++ +GQE T+ + +++ +E + Sbjct: 236 GSGSLLLT----VQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNA 291 Query: 275 NIQQGSTLSKDLF-------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326 + + D F ++NPP+ W+ +++ + + RF Sbjct: 292 DTLEAD--WPDGLDAQGVDRPKTNFDAVVANPPYSAHWDNNENKL-------KDPRFSAY 342 Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + F++H L G AIVL LF G A E IR+ ++E + Sbjct: 343 GKLAPKTKADYAFVLHGLYHLSPE----GTMAIVLPHGVLFRGAA---EGVIRQNIIEKN 395 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++A++ LP +LF+ +I T + + + + + I+A+ + GK + + Sbjct: 396 YLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEK----GKNQNKLT 448 Query: 446 DDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 ++ +I+ Y+ RE+ K++ + + P ++ ++ Sbjct: 449 EENIDKIISTYLKREDVDKYAHKAELDEIKENDYNLNIP---RYVDTFEPEPPVDLGKVA 505 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 +L ++Q + K +++ + + ++ + Sbjct: 506 DELEEVNQK-IAENKKELLEMLKELTTDDDDLRAQLDK 542 >gi|218677780|ref|ZP_03525677.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium etli CIAT 894] Length = 251 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 123/259 (47%), Positives = 163/259 (62%), Gaps = 17/259 (6%) Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 EL E+ +C + ML+ + +NI G+TL++D +RFHY LSNPP+G W Sbjct: 1 ELNGESFGICKSDMLVTGHDP-------ENIAFGNTLTQDAHKDRRFHYMLSNPPYGVDW 53 Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 +K ++ + E G+ GRFG GLP+ISDG +LFL H+ +K+ G R IV++ SP Sbjct: 54 KKYQEPIRDEAATQGKDGRFGAGLPRISDGQLLFLQHMISKMRTD-EIGSRIGIVMNGSP 112 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 LF G AGSGESEIRRW+LE+D IEAIVALPTDLF+ T I TY+W+L+NRK +RRGKVQL Sbjct: 113 LFTGGAGSGESEIRRWMLESDWIEAIVALPTDLFYNTGIQTYVWLLTNRKERKRRGKVQL 172 Query: 425 INAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476 I+A+ W +R N G KRR I DD R I I+ NG S++ D FGYR Sbjct: 173 IDASGERFWAPMRKNLGSKRREIRDDGRETITHIFHETANGGGPWSAVSKIFDASDFGYR 232 Query: 477 RIKVLRPLRMSFILDKTGL 495 I+V RPLR++F + Sbjct: 233 EIRVERPLRLNFQSSPERI 251 >gi|110004783|emb|CAK99117.1| probable adenine-specific dna-methyltransferase hsdm subunit transmembrane protein [Spiroplasma citri] Length = 517 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 105/543 (19%), Positives = 204/543 (37%), Gaps = 84/543 (15%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVR 56 + L + +W + L G + +++ + IL R L + + Sbjct: 5 EKQNVQQQQLFSKLWDISNTLRGIMEPSEYKEYILGLIFYRYLSDNVQSIIEKDLKIEWI 64 Query: 57 EKYLAFGGSNIDLESFVKVAGYS---FYNTSEYSLSTLGSTN---------TRNNLESYI 104 + + + + +Y EY + + R E I Sbjct: 65 DYQTSLTDEKYRNDFLEVLYDNDSAGYYIEPEYLWQEIINKINIGKFDIFLLRKAFEKLI 124 Query: 105 A---SFSDNAK--AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 +S + +F+ D S ++L EK+ ++ K+ + I + + Sbjct: 125 ESTIGYSSEKQFENLFDSVDLDS--SKLGKTEAEKSKIIAKVMLKINEINFEINESEIDI 182 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F SE + A +F TP+ V L L+ + I+T+YDPTC Sbjct: 183 LGDAYEYLISKFASESVKAAGEFYTPQPVSKLLAKLV--------SQGKTEIKTVYDPTC 234 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + I +GQEL+ ++ + M++ L+ + Sbjct: 235 GSGSLLLRVYKELK----------IGHLYGQELKTNSYNIARMNMMLHGLKYNK-----F 279 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 NI G TL D F G+ F ++NPP+ W ++ + E RF L + Sbjct: 280 NIYNGDTLEDDGFKGQEFEIIVANPPYSSHWSANQKFLSDE-------RFSAYGKLAPKT 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F+ ++ KL + G A V+ LF G A E IR++++E + I+ I++ Sbjct: 333 KADFAFIQNMIYKL----SDNGVMAAVIPHGILFRGNA---ELIIRKYMIEKNWIDTIIS 385 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++F+ T+I T + ++ K + I+A+ + +G K + + + + I Sbjct: 386 LPVNMFYGTSIPTCIIVMKKCK---IDNSILFIDASKEFQ---KQGNKNTLTDKNIIKII 439 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 + KFS ++D + + L+ + + L Sbjct: 440 NIFNKRKTIDKFSNLVD----------IEIIKENDYNLNIARYVDNTEEKEIINIKALQD 489 Query: 513 SFW 515 + Sbjct: 490 NLI 492 >gi|210623094|ref|ZP_03293581.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275] gi|210153897|gb|EEA84903.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275] Length = 522 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 117/560 (20%), Positives = 211/560 (37%), Gaps = 78/560 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA-- 54 + L IW A++L G DF +L R + + E R A Sbjct: 5 NKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITNYINEGEREAGD 64 Query: 55 -------VREKYLAFGGSN-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 + ++Y I+ + F + F N N LE Sbjct: 65 TDFDYACLSDEYAEEAREGLIEEKGFFILPSELFCNV---RAKAKDDDNLNETLERVFRH 121 Query: 107 FSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVP 151 ++AK +F+DFD ++ +L ++ L K+ + + L + Sbjct: 122 IEESAKGSESESDFAGLFDDFDVNN--NKLGSTVAKRNEKLCKLLDGIADMNLGYVKNHD 179 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE+L+ + S + +F TP DV L T L + K +YD Sbjct: 180 IDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYD 231 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L A + K +GQE+ T+ +C M + + D Sbjct: 232 PACGSGSLLLKAEKLL------GKDKIRNGFYGQEINITTYNLCRINMFLHDIGFDKF-- 283 Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 NI TL+ + F +SNPP+ KW + + + RF P L Sbjct: 284 ---NIACEDTLTAPAHWDDEPFELIVSNPPYSIKWAGNDNPL-----LINDPRFAPAGVL 335 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F+MH + L G AAIV ++ G A E +IR++L++N+ ++ Sbjct: 336 APKSKADLAFIMHSLSWLAP----NGTAAIVCFPGIMYRGGA---EQKIRKYLIDNNFVD 388 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 I+ LP++LFF T+IAT + +L K++ R I+AT+ + N + + Sbjct: 389 CIIQLPSNLFFGTSIATCIMVLKKNKSDNRT---LFIDATNEFVKATN----NNHMTQEN 441 Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 +I+D + +R K FS + Y + + + + ++ + +++ Sbjct: 442 MDKIVDCFANRNEVKHFSHLATYDEVAENDYNLSVSTYVEAEDTREKIDIVKLNAEIKEI 501 Query: 508 SPLHQSFWLDILKPMMQQIY 527 + + ++ +I Sbjct: 502 -VAREEALRKAIDEIIAEIE 520 >gi|325125903|gb|ADY85233.1| HsdM [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 376 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 91/415 (21%), Positives = 166/415 (40%), Gaps = 52/415 (12%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + L + +WK A+ L G+ +++ V+L L+ + A E + + Sbjct: 1 MATKSKELNFEDKLWKAADALRGNMDASEYRNVVLGLIFLKYVSDAFEEKHQELLK---- 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114 + A F+ + + + + I + + + I Sbjct: 57 SDFPEDAEDRDAYEAENIFWIPKQARWENIAGASKTQQIGEVIDQAMEAIEKENPSIQGI 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + L+K+ L K+ S I++ ++ V+ +YE+ +++F S G Sbjct: 117 LSK---NYESPDLDKS-RLGKVVDLISDIDVGSKESQDRDVLGRVYEYFLQQFASAEGRG 172 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR +V ++ +YDP CG+GG + V + Sbjct: 173 GGEFYTPRSIVKTLVEMI-----------EPYKGRVYDPCCGSGGMFVQSEEFVKEHQGR 221 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 L +G+E P T + + IR +++D QG T + D+ G F Sbjct: 222 I---DDLAVYGEESNPTTWKLAKMNLAIRGIDNDLGPH------QGDTFANDMHKGTHFD 272 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF K + K + R+ G+P S+ + ++ H+ +KL+ Sbjct: 273 YILANPPFNIKDWGGE-------KLKDDARWKYGVPPESNANYAWMEHIISKLQPD---- 321 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYL 407 G+A VL++ L R E IR+ +LE+D I+AIVALP ++ F T+ L Sbjct: 322 GKAGFVLANGALSTSRKE--ELAIRKAVLEDDKIDAIVALPGANVLFNTDPCFSL 374 >gi|303230705|ref|ZP_07317452.1| type I restriction-modification system, M subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514465|gb|EFL56460.1| type I restriction-modification system, M subunit [Veillonella atypica ACS-049-V-Sch6] Length = 531 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 110/560 (19%), Positives = 216/560 (38%), Gaps = 76/560 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 A L ++ A+ L G + +L + L L + V + Y + N Sbjct: 3 AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLE--ATVVKAYKSLDEYNTL 60 Query: 69 LES--------FVKVAGYSF---------YNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + + F Y+ L + + + +NN + + Sbjct: 61 EKQTELYKSYILDDKSKEFFIATMSDTLGYHIEPQYLFSELANSVKNNSFELVHLKNAFV 120 Query: 112 K---------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + +F+D D S + ++ + + K I++ V+ + Y Sbjct: 121 RLETAYTQFEGLFDDIDLDSKQLGVDANQRNITISDVIKKLDDIDVL--GHDGDVIGDAY 178 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F + + A +F TP+ V + ++ ++ T+YDPT G+G Sbjct: 179 EYLIGEFAAGSGKKAGEFYTPQQVSDMMAQIVTIGQEST------PAFTVYDPTMGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ + P + HGQEL T+ + +++ + SD +N+ G Sbjct: 233 MLNVRKYLKN-------PDRVQYHGQELNVTTYNLARMNLILHEVNSD-----DQNLHNG 280 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL+KD + + + + NPP+ KW D ++ R+G L S Sbjct: 281 DTLNKDWPVDEPYMFDSVVMNPPYSAKWSADPTFMDDAR----FNRYG-KLAPKSKADFA 335 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +L Sbjct: 336 FLLHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVIGMPANL 388 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL + V I+A++ +T +N + + + ++I+D Y Sbjct: 389 FFGTSIPTTVIILKKNRPGR---DVLFIDASNDFTKFKN----QNKLEPEHIKRIVDTYN 441 Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH---QS 513 +R++ + +S + + + P + ++ + + + ++ + Sbjct: 442 NRKSIEKYSYLASFDEIKDNDFNLNIPRYVDTFEEEAPIDMVALGKEMKSINEEEVKLEK 501 Query: 514 FWLDILKPMMQQIYPYGWAE 533 D+L + Q W Sbjct: 502 EIYDMLLQLECQNDDKDWLN 521 >gi|308189189|ref|YP_003933320.1| Type I restriction-modification system methyltransferase subunit [Pantoea vagans C9-1] gi|308059699|gb|ADO11871.1| Type I restriction-modification system methyltransferase subunit [Pantoea vagans C9-1] Length = 863 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 102/495 (20%), Positives = 193/495 (38%), Gaps = 64/495 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L T+ + K + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPKDIKALN 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFED 117 ++ + ST +N R+ L ++ S N K +FE Sbjct: 62 EEDADTVKYVQDNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPNYKKLFEG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I V+ IYE+LI +F + Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNSNQGYDVLGYIYEYLIEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + V Sbjct: 181 GKKAGEFYTPHEVSVLMSHIIAHELKH------KETIKIYDPTSGSGSLLINIGEAVE-- 232 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + K + QEL+ T+ + +++R +++ + + G TL D Sbjct: 233 -KYAKSKDSITYFAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ + W+ + RF GL + FL Sbjct: 287 DSDPQGSYYTLHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G E +IR+ L+E + I+ ++ LP ++FF Sbjct: 340 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTVIGLPANIFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L K + + V +++A+ + K + ++I D ++R Sbjct: 393 GTSIPTVILVL---KQKRQNTDVLVVDASRHFMKE----GKSNKLQASDIKRITDAVINR 445 Query: 460 EN-GKFSRMLDYRTF 473 E+ KFS+++ +T Sbjct: 446 ESIDKFSQLVSKQTL 460 >gi|268611918|ref|ZP_06145645.1| type I restriction-modification system methylation subunit [Ruminococcus flavefaciens FD-1] Length = 534 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 101/566 (17%), Positives = 209/566 (36%), Gaps = 70/566 (12%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------PTR 52 ++ L + +W A+ L G ++ +L + L + Sbjct: 4 NENSKDLLSVLWAGADILRGKMDANEYKNYLLGIVFYKYLSDTFLTHVYDLLNNEKPESM 63 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--------SY 103 + + Y + E + Y + + L ++N + ++ Sbjct: 64 AEAQAAYEEVYSTEDAEELLEDIKESYHYTIEPELTYTKLAEAASKNAFQREMLKKAFNH 123 Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + +F D D ST +++ + ++ K + +L V+ + YE Sbjct: 124 VEQSDPIFANLFADVDLYSTRLGSGEQKQSATVAEVVKKINEADLL--NHEGDVLGDAYE 181 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI +F SE + A +F TP+ V + T + + + +YD G+G L Sbjct: 182 YLIGQFASETGKKAGEFYTPQAVSQILTRVAIQGQED------KQGLLVYDAAMGSGSLL 235 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +A P + GQEL T+ + M + ++ + + ++ Sbjct: 236 LNARKFSH-------KPDYIRYFGQELSTTTYNLARMNMFLHGVDPENQT-----LRNAD 283 Query: 281 TLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL D T + F L NPP+ KW + + RF L S Sbjct: 284 TLDADWPTDEETDFDMVLMNPPYSAKWSAAQGFLN-------DSRFSDYGVLAPKSKADY 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L+ G AI+L LF G A E +IR+ L+++ I A++ LP + Sbjct: 337 AFLLHGFYHLKNT----GTMAIILPHGVLFRGAA---EGKIRQKLIDSGAIYAVIGLPAN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T+I T + L + + I+A+ + GKK+ ++ + I+++Y Sbjct: 390 LFYNTSIPTTIIALKKNRDGR---DILFIDASQQFVK----GKKQNSMSPENIDHIIELY 442 Query: 457 VSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 +R++ + + + Y + P + + ++ + + +S + Sbjct: 443 TARQDVEKEAHLATYEEIKANDYNLNIPRYVDTFEQEEQISLSDLASEFSDISAEMDTAA 502 Query: 516 LDILKPMMQQIYPYGWAESFVKESIK 541 D++ M + ++ + + +K Sbjct: 503 TDLITQMGELTAADADTKNELADLMK 528 >gi|297581881|ref|ZP_06943802.1| type I restriction enzyme M protein [Vibrio cholerae RC385] gi|297533975|gb|EFH72815.1| type I restriction enzyme M protein [Vibrio cholerae RC385] Length = 832 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 98/487 (20%), Positives = 185/487 (37%), Gaps = 72/487 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W + ++L G + + +L ++ + +G Sbjct: 1 MAIKKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYVSD--------------KYG 46 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSS 122 S+ G SF + + + I + + A++ F DF+ + Sbjct: 47 DSDDFAPPVTIPPGASFKDMVALKGKSDIGDKINTQIIQPLIDANTRLARSDFPDFNDPN 106 Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175 +L + L + F EL D ++ + YE+L+R F S+ + Sbjct: 107 ---KLGEGQAMVDRLSNLIGIFQKPELDFSKNRAENDDILGDAYEYLMRHFASQSGKSKG 163 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ T YDPTCG+G L + Sbjct: 164 QFYTPSEVSRIMAKVVGISPANAV-----ASTTAYDPTCGSGSLL---------LKVAAE 209 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------ 289 + GQE++ T + M++ + NI QG+TL+ F Sbjct: 210 AGKHITLEGQEMDVTTAGLARMNMILH-------DFPTANILQGNTLASPKFKDGRKDGT 262 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + + Y ++NPPF K + RF G P G +L+H+ + Sbjct: 263 EVLRTYDYVVANPPFSDKTWSTGLTPASDAHQ----RFAWGEPPKKQGDYAYLLHIIRSM 318 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ A +L LF G A E+ IR L+ + +++ I+ LP++LF+ TNIA Sbjct: 319 KST----GKGACILPHGVLFRGNA---EAVIREKLVRSGILKGIIGLPSNLFYGTNIAAC 371 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465 + +L R+G + +I+A+ + +G K R + + +I+D + ++S Sbjct: 372 ILVLDKENASARKG-IFMIDASKGFI---KDGAKNR-LREQDIHKIVDAFTKLAELPRYS 426 Query: 466 RMLDYRT 472 RM+ Sbjct: 427 RMVPLTE 433 >gi|194467963|ref|ZP_03073949.1| type I restriction-modification system, M subunit [Lactobacillus reuteri 100-23] gi|194452816|gb|EDX41714.1| type I restriction-modification system, M subunit [Lactobacillus reuteri 100-23] Length = 549 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 104/508 (20%), Positives = 183/508 (36%), Gaps = 81/508 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTRSA 54 A + + +W+ A L + +++ IL F R L E + Sbjct: 2 NKAQEITSQLWEMANRLRSNMDASEYRNYILGFMFYRYLSEHQEKSMVENKLIDVAEGQS 61 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTR-----NNLESYIASFS 108 V + Y + ++A Y + Y+ +T+ ++ + + SF+ Sbjct: 62 VNDAYKEQASGEDLNDYLEEIASSLGYAIAPEYTWATIVDKVNNNTIAPSDYQDMLDSFN 121 Query: 109 DNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 N IF+D + ++ + +A L I IE D ++ Sbjct: 122 HNLNLNRNAKMDFHGIFDDMNLGNSRLGNSTSARAKALTDIVNLVDQIEYK-DENGHDIL 180 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +IY +LI F + A +F TP V + L+ D K +YD CG Sbjct: 181 GDIYTYLIAEFAGNSGKKAGEFYTPHQVSEILAKLVTLNLDPGIKNPE-----VYDFACG 235 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + V L GQEL T+ + +++ + Sbjct: 236 SGSLLLTVQDQV--------PNRRLKYAGQELNTTTYNLARMNLMMHDVRYQNMT----- 282 Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 ++ TL D G F ++NPP+ +W + + RF Sbjct: 283 LKNADTLEMDWPDGIDEHGVDHPHSFDMVVANPPYSARW-------DNNDNKLKDPRFKE 335 Query: 327 --GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + FL+H L+ G AIVL LF G E++IR+ LLE Sbjct: 336 YGALAPKTKADYAFLLHGLYHLKQD----GTMAIVLPHGVLFRGAK---EAQIRKALLEK 388 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+AI+ LP +LF+ T I T + +L K + V I+A+ + GK + ++ Sbjct: 389 NQIDAIIGLPANLFYSTGIPTVVLVLKKNKENK---DVLFIDASKNFEK----GKNQNVL 441 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472 + +I+ Y R++ + Sbjct: 442 RKEDIDKIIGTYKERKDVDKYAHVATID 469 >gi|145630827|ref|ZP_01786605.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae R3021] gi|144983709|gb|EDJ91169.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae R3021] Length = 555 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 95/573 (16%), Positives = 191/573 (33%), Gaps = 87/573 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L W +A+ L ++ ++L L+ + + + + Sbjct: 20 LNELDEKFWVSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPGNPLY 79 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 E+Y + ++ + A F+ + L + N + + Sbjct: 80 LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 137 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 FS AK I + FD +L+ L + FS T Sbjct: 138 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNG 197 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 198 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 246 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF +A + + +GQE P T + M IR + Sbjct: 247 YSGRVYDPAMGSGGFFVQTERFIAAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 303 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 304 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 350 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 351 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 404 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 405 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRQGEVLFIDARQIGYMKDRV---LRDF 459 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I + + + S + + + + F+L E + Sbjct: 460 TADDIAKIANTLHAWQK---SNGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 516 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 517 GVPFTEKMQNLTALLKEQFEKSTKLEAEIKKNL 549 >gi|255011913|ref|ZP_05284039.1| type I restriction-modification system methylation subunit [Bacteroides fragilis 3_1_12] gi|313149747|ref|ZP_07811940.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138514|gb|EFR55874.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 512 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 96/490 (19%), Positives = 181/490 (36%), Gaps = 67/490 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65 + +F+W A L G + + I P +R+ + V E + + G Sbjct: 16 TLDEFKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGK 75 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDN----------AK 112 ++ G + + N N L I + + Sbjct: 76 QVEDLPIRIPEGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF D + A++ + ++ + ++FS L P M YE+L+ +F + Sbjct: 130 GIFGPKDGWTNKAKMPDS-IITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A++F T R VV L +L P ++YDPTCG+GG L ++++ + G Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGD 238 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 + GQE+ T ++ + + +E +I TL F Sbjct: 239 E---WQSVQVFGQEVNGLTSSIARMNLYLNGVE-------DFSIVCADTLEHPAFLDGSH 288 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F L+NPP+ K ++ N + GR G P F+ H+ + Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFIQHILASMN- 342 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GR AI+L LF E +IR+ L+ +D +EA++ L +LF+ + + + Sbjct: 343 --EKNGRCAILLPHGILFR----QEEKDIRKSLVLSDSLEAVIGLGPNLFYNSPMEACIL 396 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENG 462 + K + + K+ INA + R G+ + + ++IL + + + Sbjct: 397 FCNKNKPQHLKDKIIFINAIN--EVTRKNGE--SYLEEKHIKKILSAFYNNSDIPQFKET 452 Query: 463 KFSRMLDYRT 472 + Sbjct: 453 IDINDICNNE 462 >gi|21226531|ref|NP_632453.1| type I restriction-modification system methylation subunit [Methanosarcina mazei Go1] gi|20904801|gb|AAM30125.1| type I restriction-modification system methylation subunit [Methanosarcina mazei Go1] Length = 576 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 103/582 (17%), Positives = 196/582 (33%), Gaps = 97/582 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L N +W+ A+ L + ++ V+L L+ + A E + + E + NI Sbjct: 9 LNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNI 68 Query: 68 ---------DLESFVKV------------AGYSFYNTSEYSLSTLGS------------- 93 E++ + F+ + L Sbjct: 69 YYLPREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQD 128 Query: 94 ---TNTR--------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 + + +N I + K I A L + FS Sbjct: 129 EQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRISQYQL-----DADKLIGLINEFSL 183 Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 + + ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 184 TSFNNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEP 249 +YDP G+GGF + + + + + +GQE P Sbjct: 241 --------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP 292 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKD 308 T + M+IR ++ + + + + D R + ++NPPF W + Sbjct: 293 TTWKLAAMNMVIRGIDFNFGK------KNADSFLDDQHPDLRADFVMTNPPFNMKDWWHE 346 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 K A + G P + + +++H+ L G A ++ + S N Sbjct: 347 KLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT---GSMALLLANGSMSSNT 403 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQ 423 E EIR+ L+E DL+E +VALP LF T I +W L+ K +RRG+V Sbjct: 404 NN---EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVL 460 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 I+A L R D+ +++ D + + + ++S + F + + Sbjct: 461 FIDARKLGYMKDRV---LRDFKDEDIQKLADTFHNWQQ-EWSEENNQAGFCFSA-DLALI 515 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + F+L EA+ L + LK ++ Sbjct: 516 RKNDFVLTPGRYVGAEAEEDDGILFADKMAVLTSQLKEQFEE 557 >gi|260495161|ref|ZP_05815289.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_33] gi|260197218|gb|EEW94737.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_33] Length = 520 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 214/563 (38%), Gaps = 86/563 (15%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EP 50 M A L IW A DL G DF + +L R + L E Sbjct: 1 MNNKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEA 60 Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 S L+ + + E ++ G+ F SE ++ + NL + + N Sbjct: 61 GNSDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFINVRRKADKDENLNVTLDTIFKN 119 Query: 111 A-------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151 K +F+D D +S +L ++ L + ++L Sbjct: 120 IENSANGTESESDLKGLFDDIDVNS--NKLGGTVVKRNENLVNLINGVGDMKLGDYQENT 177 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE+L+ + S + ++ TP++V L T L L + K +YD Sbjct: 178 IDAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYD 229 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 230 PACGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF-- 281 Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 282 ---DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVL 333 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ Sbjct: 334 APKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYID 386 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 I+ LP +LF+ T+IAT + +L K KV I+A+ + + N + + Sbjct: 387 CIIQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKH 439 Query: 449 RRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEAD 501 I++ + REN ++ S ++D Y +I V +S + +E + Sbjct: 440 IDDIVEKFTKRENIEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELN 493 Query: 502 ITWRKLSPLHQSFWLDILKPMMQ 524 ++ + +I K + + Sbjct: 494 KEIERIVVREEELRKEIDKIIAE 516 >gi|121609378|ref|YP_997185.1| type I restriction-modification system, M subunit [Verminephrobacter eiseniae EF01-2] gi|121554018|gb|ABM58167.1| type I restriction-modification system, M subunit [Verminephrobacter eiseniae EF01-2] Length = 526 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 112/497 (22%), Positives = 187/497 (37%), Gaps = 71/497 (14%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA 54 M + A L IW+ A DL G DF +L R + L E R+A Sbjct: 1 MNNSKETERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTAYLNEQERNA 60 Query: 55 V--REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIA------ 105 +Y A S + VA FY + + NL ++ Sbjct: 61 GDPEFEYAALNDSGAEFGRAETVAEKGFYILPSHLFDNVRKQARLDANLNETLSRVFADI 120 Query: 106 SFSDNAKAIFEDF-----DFSSTIARL-----EKAGLLYKICKNF-----SGIELHPDTV 150 S N +DF D ++L ++ L K+ + Sbjct: 121 ESSANGADSEDDFKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSAPGKFSDN 180 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + YE+L++ + S + +F TP++V L + + + K +Y Sbjct: 181 TIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSELLARITVVGKTEINK--------VY 232 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP CG+G L + GQE+ T +C M + + + Sbjct: 233 DPACGSGSLLLKFAKVLGHDAVRQG------FFGQEINLTTFNLCRINMFLHDVNYEKF- 285 Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 N+ G TL+ + F +SNPP+ +W+ D + + RF P Sbjct: 286 ----NVAHGDTLTDPAHWDDEPFEAIVSNPPYSIRWDGDANPL-----LINDPRFAPAGV 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S + F MH+ + L + G AAIV L+ G A E +IR++L++N+ + Sbjct: 337 LAPKSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYV 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + ++ LP DLFF T IAT + +L K + ++A+ + G K + D Sbjct: 390 DTVIQLPPDLFFGTTIATCIIVLKKSKRDNAT---LFVDASAEFM---RSGNK-NKLTDA 442 Query: 448 QRRQILDIYVSRENGKF 464 +++ILD Y+ R N Sbjct: 443 HQQKILDAYIERRNIDH 459 >gi|306826261|ref|ZP_07459595.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431537|gb|EFM34519.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 519 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 109/493 (22%), Positives = 181/493 (36%), Gaps = 69/493 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M L IWK A+++ G DF + IL R + + E Sbjct: 1 MMSEQVQRQELHRKIWKIADEVRGAVDGWDFKQYILGILFYRFISENFKTYIEGGDESIN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 Y I E Y L + R N + + K IF+D Sbjct: 61 YEEISEDLITPEVRDDAIKTKGYFIMPSQLFSSVVKAARQN-----EHLNTDLKDIFDDI 115 Query: 119 ------------------DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155 D + +L E+ L I + + ++ + Sbjct: 116 ESSAIGYASEHDIKGLFDDVDTRSNKLGSTVPERNQRLTLILEGIASLDFGNFEDNHIDL 175 Query: 156 -SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+LI + S + +F TP+ V L +++ + K + +YDP C Sbjct: 176 FGDAYEYLISNYASNAGKSGGEFFTPQSVSKLLARIVMLGKNEKNKIN-----KIYDPAC 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L A + +GQE+ T+ + M + + D Sbjct: 231 GSGSLLLQAKKQFNEHIIEDG------FYGQEINMTTYNLARMNMFLHNINYDKFS---- 280 Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 I++G+TL + F +SNPP+ KW D RF P L Sbjct: 281 -IERGNTLLDPKHVNDKPFDAIVSNPPYSIKWIGSDDPT-----LINDDRFAPAGVLAPK 334 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S F+MH + L GRAAIV + G A E +IR++L++N+ +EA++ Sbjct: 335 SKADFAFIMHSLSYLSNK----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVEAVI 387 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T+IAT + IL+ K + ++A+ + N ++ ++ + Sbjct: 388 QLPDNLFFGTSIATCILILAKNKP---TTDILFVDASKQFKKETN----NNVLTEENIEK 440 Query: 452 ILDIYVSRENGKF 464 ILD +EN + Sbjct: 441 ILDSVEKKENEDY 453 >gi|291288564|ref|YP_003505380.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809] gi|290885724|gb|ADD69424.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809] Length = 521 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 100/552 (18%), Positives = 196/552 (35%), Gaps = 65/552 (11%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W +A L G + +++ V+L L+ E + + + ++ Sbjct: 14 LWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFEERKKELIAEGKEKYTDMVE----FY 69 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 FY E S + + ++N+ S + + K D FS L Sbjct: 70 TMRNVFYLPEESRWSHIKKNSKQSNIALIVDTALSTVEKNNAALKGALPDNYFSRLG--L 127 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E + L + S I+ D ++ +YE+ + +F +G +F TP+ +V+L Sbjct: 128 ETSK-LAALIDTISNIDTLKDK-ERDIVGKVYEYFLSKFALAEGKGKGEFYTPKSIVNLI 185 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 ++ +YDP CG+GG +M + + K + +GQEL Sbjct: 186 AEMI-----------EPYKGKIYDPCCGSGGMFVQSMKFIDAHKGNRK---DVSIYGQEL 231 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + + IR + ++ T D F + Y ++NPPF Sbjct: 232 TAATYKLAKMNLAIRGISANLGEIGK------DTFLNDQFPDLKADYIMANPPFN----- 280 Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + R+ G P + + + +++H+ +KL + G A +L++ L Sbjct: 281 -QKDWRAGTELTSDPRWNGYETPPVGNANYGWILHMVSKL----SENGVAGFILANGALS 335 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG------ 420 G E +IR+ ++EN+L+EAI+ LP ++F+ TNI+ LWI++ K E Sbjct: 336 GGG---DEYKIRKKIIENNLVEAIIILPQNMFYTTNISVTLWIINKNKKERVVNIPDSTR 392 Query: 421 -------KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +V ++ K ++D ++ + + + +F D Sbjct: 393 EYRSREKEVLFMDLRQEGEPFEK---KYIQFHEDHIKRFARTFHTWQTKQFHDEFDNVPE 449 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 F L + +S D + + + Sbjct: 450 YCYSATFDEIKAKDFSLVPSKYIEFVNRDEDIDFDEKMRSLKDDFTELLKGEEKSKAELL 509 Query: 534 SFVKESIKSNEA 545 KE E Sbjct: 510 KVFKELGYEIEL 521 >gi|284055706|pdb|3KHK|A Chain A, Crystal Structure Of Type-I Restriction-Modification System Methylation Subunit (Mm_0429) From Methanosarchina Mazei. gi|284055707|pdb|3KHK|B Chain B, Crystal Structure Of Type-I Restriction-Modification System Methylation Subunit (Mm_0429) From Methanosarchina Mazei Length = 544 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 94/518 (18%), Positives = 176/518 (33%), Gaps = 95/518 (18%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L N +W+ A+ L + ++ V+L L+ + A E + + E + NI Sbjct: 10 LNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNI 69 Query: 68 ---------DLESFVKV------------AGYSFYNTSEYSLSTLGS------------- 93 E++ + F+ + L Sbjct: 70 YYLPREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQD 129 Query: 94 ---TNTR--------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 + + +N I + K I A L + FS Sbjct: 130 EQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRISQYQL-----DADKLIGLINEFSL 184 Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 + + ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 185 TSFNNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 241 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEP 249 +YDP G+GGF + + + + + +GQE P Sbjct: 242 --------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP 293 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKD 308 T + M+IR ++ + + + + D R + ++NPPF W + Sbjct: 294 TTWKLAAMNMVIRGIDFNFGK------KNADSFLDDQHPDLRADFVMTNPPFNMKDWWHE 347 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 K A + G P + + +++H+ L G A ++ + S N Sbjct: 348 KLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT---GSMALLLANGSMSSNT 404 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQ 423 E EIR+ L+E DL+E +VALP LF T I +W L+ K +RRG+V Sbjct: 405 NN---EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVL 461 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 I+A L R D+ +++ D + + + Sbjct: 462 FIDARKLGYMKDRV---LRDFKDEDIQKLADTFHNWQQ 496 >gi|260903741|ref|ZP_05912063.1| type I restriction-modification system, M subunit [Brevibacterium linens BL2] Length = 523 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 118/561 (21%), Positives = 211/561 (37%), Gaps = 76/561 (13%) Query: 1 MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPT 51 M T A L IW+ A DL G DF +L R + L E Sbjct: 1 MAPTTKEAQRAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYLNKNEHD 60 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIAS-FS- 108 V Y S+ + VA FY + + + NL + F+ Sbjct: 61 AGEVSFDYRLAADSDAEFARDEVVAEKGFYILPSDLFANVRDRAAGDENLNETLERVFNN 120 Query: 109 -----------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151 D+ K +F+D D +S +L ++ L K+ + L + Sbjct: 121 IEASAMGTDSEDDIKGLFDDLDVNS--NKLGSTVAKRNQKLVKLLDAIGDLPLGRWEDNS 178 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE+L++ + + + ++ TP++V L + + + K +YD Sbjct: 179 IDLFGDAYEYLMQMYAANAGKSGGEYYTPQEVSELLARITVAGKKQVNK--------VYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P G+G L + +GQE+ T+ + M + + Sbjct: 231 PAVGSGSLLLKFDKVLGKNNVRQG------FYGQEINLTTYNLARINMFLHDVN-----Y 279 Query: 272 LSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 N+ G TL+ + F +SNPP+ KW+ D + + RF P L Sbjct: 280 ADFNLAHGDTLTDPQHWDDEPFEAIVSNPPYSIKWDGDANPL-----LINDERFAPAGVL 334 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F MH+ + L G AAIV L+ G A E +IR++L++N+ I+ Sbjct: 335 APKSKADLAFTMHMLSWL----AVNGTAAIVEFPGVLYRGGA---ERKIRQYLVDNNYID 387 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 ++ LP DLFF T IAT + +L K + G V I+A+ + + G K + ++ Sbjct: 388 TVIQLPPDLFFGTTIATCILVLKKSK---KTGDVLFIDASAEF---KRVGNK-NKLLEEH 440 Query: 449 RRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADIT-W 504 + +IL+ + +RE F+ ++ + + + +A L A+I Sbjct: 441 QARILEAFTTREPEDYFTTVVSNEDIAANDYNIAVSSYVEAEDTREEVDIAELNAEIARI 500 Query: 505 RKLSPLHQSFWLDILKPMMQQ 525 ++ +I+ + Sbjct: 501 VARQAELRTAIDEIVADLEGA 521 >gi|315648620|ref|ZP_07901717.1| type I restriction-modification system, M subunit [Paenibacillus vortex V453] gi|315275999|gb|EFU39347.1| type I restriction-modification system, M subunit [Paenibacillus vortex V453] Length = 530 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 96/496 (19%), Positives = 198/496 (39%), Gaps = 70/496 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTRSAVREKY 59 A L + ++ A++L +++ +L + L L + ++ + Sbjct: 1 MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESKEEYNTQE 60 Query: 60 LA-------FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 ++ + + Y+ L + + + N+ + + Sbjct: 61 KQTQLYRSLLADKEVEKDLIDTLVDTLGYDIGPDYLFNVLTNQAKQNIFQ-LNDLNKAFI 119 Query: 113 AIFEDFD-FSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + +D F+ ++ + + ++ K + I++ ++ + Y Sbjct: 120 DLSTKYDQFNGLFDDVDLTSKKLGSDDQQRNITITEVLKKLNDIDVI--GHNGDIIGDAY 177 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LI +F SE + A +F TP +V + + + + +++DPT G+G Sbjct: 178 EFLISQFASEAGKKAGEFYTPHEVSDMMARIATIGQED------KKLFSVFDPTMGSGSL 231 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + N++ P + HGQEL T+ + +++ ++ + R ++ G Sbjct: 232 MLNVRNYL-------NHPDNVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNG 279 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL+KD T + + + L NPP+ W D ++ R+G L S Sbjct: 280 DTLNKDWPTDEPYTFDSVLMNPPYSANWSSDDTFLDDSR----FNRYG-KLAPKSKADFA 334 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +L Sbjct: 335 FLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANL 387 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T+I T + IL +T V I+A+ +T ++N + ++++ +I++ Y Sbjct: 388 FYGTSIPTTVIILKKNRTTR---DVLFIDASHEFTKVKN----QNNLSEEHIDKIVETYK 440 Query: 458 SRENGKFSRMLDYRTF 473 REN + + Sbjct: 441 RRENVERYAHVATFEK 456 >gi|30022540|ref|NP_834171.1| Type I restriction-modification system methylation subunit [Bacillus cereus ATCC 14579] gi|29898098|gb|AAP11372.1| Type I restriction-modification system methylation subunit [Bacillus cereus ATCC 14579] Length = 468 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 102/487 (20%), Positives = 197/487 (40%), Gaps = 72/487 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY---- 59 A L + ++ A++L +++ +L + L L E+Y Sbjct: 1 MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYDTQE 60 Query: 60 -------LAFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFSDNA 111 + +I + + Y+ +Y + L + +N + + + Sbjct: 61 KQTQLYRESLADEDIKNDLIETLVDTLGYDIELDYLFNVLTNQAKQNTFQ--LNDLNKAF 118 Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158 + +D F+ ++ K+ L ++ K + +++ V+ + Sbjct: 119 IDLSTKYDQFNGLFDDVDLKSKKLGADDQQRNITITEVLKKLNDVDVL--GHNGDVIGDA 176 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI +F SE + A +F TP +V + + + + +++DPT G+G Sbjct: 177 YEFLIGQFASEAGKKAGEFYTPHEVSVMMARIAAIGQED------KKLFSVFDPTMGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + + N++ P + HGQEL T+ + +++ ++ + R ++ Sbjct: 231 LMLNIQNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRN 278 Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G TL+KD T + + + L NPP+ KW D ++ R+G L S Sbjct: 279 GDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADF 333 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L+ G AIVL LF G A E IR+ LLE+ I+A++ +P + Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T+I T + IL + V I+A+ + GK + + + +I++ Y Sbjct: 387 LFFGTSIPTTVIILKKNRATR---DVLFIDASKEFIK----GKNQNKLFKEHIDKIVETY 439 Query: 457 VSRENGK 463 RE+ + Sbjct: 440 KKREDVE 446 >gi|228984123|ref|ZP_04144309.1| Type I restriction-modification system, M subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775651|gb|EEM24031.1| Type I restriction-modification system, M subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 530 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 105/485 (21%), Positives = 196/485 (40%), Gaps = 68/485 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKY---- 59 L + ++ A++L +++ +L + L L V E+Y Sbjct: 1 MTELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEVADESLEEYNTQE 60 Query: 60 -------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIAS 106 +I + + Y+ L + + + N L Sbjct: 61 KQVQLYRELLADEDIKSDLIETLVDTLGYDIEPNYLFNVLTNQAKQNTFQLTELNKAFID 120 Query: 107 FS---DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 S D +F+D D S ++ + ++ K + +++ V+ + YE Sbjct: 121 LSTRYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDVDVM--GHNGDVIGDAYE 178 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI +F SE + A +F TP++V + + + + +++DPT G+G + Sbjct: 179 FLIGQFASEAGKKAGEFYTPQEVSDMMACIAAIGQED------KKLFSVFDPTMGSGSLM 232 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + ++ P + HGQEL T+ + +++ ++ + R ++ G Sbjct: 233 LNIRKYI-------SHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGD 280 Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 TL+KD T + + + L NPP+ KW D ++ R+G L S F Sbjct: 281 TLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADFAF 335 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G AIVL LF G A E IR+ LLE+ I+A++ +P++LF Sbjct: 336 LLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPSNLF 388 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + IL +T V I+A++ + GK + ++ +I++ Y Sbjct: 389 FGTSIPTTVIILKKNRTTR---DVLFIDASNEFDK----GKNQNKLSPKYINKIVETYKK 441 Query: 459 RENGK 463 REN + Sbjct: 442 RENVE 446 >gi|210135043|ref|YP_002301482.1| type I R-M system M protein [Helicobacter pylori P12] gi|210133011|gb|ACJ08002.1| type I R-M system M protein [Helicobacter pylori P12] Length = 527 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 124/567 (21%), Positives = 210/567 (37%), Gaps = 80/567 (14%) Query: 2 TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRS 53 S L N IWK A +L G DF + +L R + + E + Sbjct: 6 NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKR 65 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYI-ASFSD-- 109 Y + + F+ + L + + +L + F++ Sbjct: 66 DPSFDYAKLSDEEAERAREHLIEEKGFFIPPSALFCNALKNAPSNEDLNVTLQNIFNEIE 125 Query: 110 ----------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155 N K +F D D +S + + G L KI + G++L V Sbjct: 126 KSSLGTPSEENVKGLFADLDVNSNKLGSSHKNRVGKLTKILQAIGGMQLGDYLKSGIDVF 185 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+L+ + S + +F TP++V L + L +++ K +YDP CG Sbjct: 186 GDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHGQESVNK--------VYDPCCG 237 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + D GQE+ T+ +C M + + + Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286 Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL + F +SNPP+ KW D + RF P L + Sbjct: 287 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNSPL-----LINDERFSPAGVLAPKN 341 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F MH+ + L G AAIV L+ G A E++IR +L++ ++I+ ++A Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIA 394 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF T+IAT + +L K ++ I+A+ + EGKK + + R +I Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFV---KEGKK-NKLKERNREKI 447 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 L Y+ R+ K L + R + L E + L+ Sbjct: 448 LQTYIERKEIKHFCALAN---------IERIKENDYNLSVNRYVEQEDTKEIIDIKALN- 497 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539 +I + + +Q E +KE Sbjct: 498 ---SEISQIVEKQSALRNSLELIIKEL 521 >gi|117676179|ref|YP_863755.1| N-6 DNA methylase [Shewanella sp. ANA-3] gi|117615003|gb|ABK50456.1| N-6 DNA methylase [Shewanella sp. ANA-3] Length = 567 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 106/585 (18%), Positives = 194/585 (33%), Gaps = 101/585 (17%) Query: 1 MTE-FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56 M E L +W A+ L + + +L ++ + A + ++ Sbjct: 1 MNELEQEFLKDLEKKLWNAADKLRATLDASQYKHAVLGLIFVKYVSDAFSMRQEEIKADL 60 Query: 57 -----EKYLAFGGSNIDLESFVKVA----------GYSFYNTSEYSLSTLGST------- 94 E YL + D + A F+ +E L Sbjct: 61 TNPEHEYYLDPADFSEDELAEEIAAELEVRDFYTEKNVFWLPTESRWKFLQDNGPMVIGG 120 Query: 95 ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 + +N I + K + S I + L ++ Sbjct: 121 ADLVIDGKTKKITSVGHLIDNALEGIERDNQKLKGVLNKHYASLKIDQ----AKLNELIN 176 Query: 139 NFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + I + + ++ +IYE+ + +F + F TP +V L ++ Sbjct: 177 LIATIPFNHKSLNSKDILGHIYEYFLGQFALAEGKKGGQFYTPASIVSLIVEMI------ 230 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252 +YDP G+GGF + + + +I + +GQE T Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERRANQKEIDPLTQKQRISIYGQEYNYTTW 285 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M IR L+ D ++ + ST + D R + ++NPPF K Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNDQHPDLRADFIMANPPFNMKEWNT---- 335 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + R+ G P + + ++ H+ L G +A ++ + S Sbjct: 336 ---GVDDNDPRWVYGTPPSGNANFAWMQHMLYHLAPD---GSQALLLANGSMSSTTNN-- 387 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKV 422 E EIR L+ENDL+E +VALP LF T I +W L+ K +R+G+V Sbjct: 388 -EGEIRAALVENDLVECMVALPGQLFTNTQIPACIWFLAKNKKARTDKSGRKLRDRKGEV 446 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480 I+A +L R D +++ D+Y + + G + Y G+ + + Sbjct: 447 LFIDARNLGYMKDRV---LRDFTQDDIQKVADLYHAWKTGAEVNGIAYEDQAGFCKSATL 503 Query: 481 LRPLRMSFILDKTGL----ARLEADITWRKLSPLHQSFWLDILKP 521 + F+L L+ I + + S D Sbjct: 504 EEIKKHDFVLTPGRYVGATEELDDGIPFGEKMATLTSKLSDQFAE 548 >gi|319954804|ref|YP_004166071.1| type i restriction-modification system, m subunit [Cellulophaga algicola DSM 14237] gi|319423464|gb|ADV50573.1| type I restriction-modification system, M subunit [Cellulophaga algicola DSM 14237] Length = 905 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 115/579 (19%), Positives = 215/579 (37%), Gaps = 89/579 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W++ + L G + + +L ++ + Sbjct: 1 MAIKKSELYSSLWESCDALRGSMDASQYKDYVLVMLFIKYISDKW--------------- 45 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G SF + + ST + + IA+ ++ AK F DF+ + Sbjct: 46 -AGQPYAPITIPKGSSFADMTALKGSTDIGDQINKKILAPIAAANNLAK--FPDFNDPTK 102 Query: 124 IARLEK-AGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + ++ L + F L D ++ + YE L+R F ++ + F T Sbjct: 103 LGSDKEMIDTLDALIGIFENPALDFSKNKADGDDILGDAYEFLMRHFATQSGKSKGQFYT 162 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P +V +++ + + T+YDPTCG+G L + Sbjct: 163 PSEVSRTMASIIGINNVDTNSD-----ITVYDPTCGSGSLL---------LKVGTEAKSK 208 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-------KRF 292 + +GQE + T + M++ + + I+QG+TLSK LF K F Sbjct: 209 VTLYGQEKDATTAGLARMNMILH-------DNPTAEIKQGNTLSKPLFEDPKLEANLKTF 261 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351 + ++NPPF K + + + RF G+P +G FL+H+ L+ Sbjct: 262 DFVVANPPFSDKRWSNGLTLPD----DKYNRFADYGIPPSKNGDYAFLLHIVRSLK---- 313 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+ AI+L LF G A ESEIR L++ I+ I+ LP +LF+ T I + + Sbjct: 314 RNGKGAIILPHGVLFRGNA---ESEIRTNLIKKGFIKGIIGLPANLFYGTGIPAAIIFID 370 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470 R+G + +I+A + +G K R + + R+I D++ +++ K FS Sbjct: 371 KENAANRKG-IFMIDAGKGFI---KDGNKNR-LREQDIRRITDVFAAQKEVKGFS----- 420 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 R + + + + L+ + + DI + I Sbjct: 421 -----RMVSIEDISKNEYNLNIPRY-----------IDNQEKEDIQDIEAHLKGGIPIAD 464 Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569 + + K+L K + + I KD Sbjct: 465 IDDLSNFWEVYPTLRKSLFEKINDKYSNLTIENEQIKDE 503 >gi|315231357|ref|YP_004071793.1| Type I restriction-modification system DNA-methyltransferase subunit M [Thermococcus barophilus MP] gi|315184385|gb|ADT84570.1| Type I restriction-modification system DNA-methyltransferase subunit M [Thermococcus barophilus MP] Length = 515 Score = 286 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 114/549 (20%), Positives = 218/549 (39%), Gaps = 67/549 (12%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YL 60 T + L + K A+ + + IL L+RL E EK Sbjct: 14 NKTVTREELERVLKKAADLIRTRVD---YK-YILLLLFLKRLSDEWEKEFEGYVEKLVKE 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASF---SDNAKAI 114 + + + Y+ SEY L + NL + + N + + Sbjct: 70 GLDRKTAEKIALQDKSAYTIAYPSEYLWRKLREKDIEKLPQNLSEALKKLAELNPNLRGV 129 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + FDF + + A +L ++ + FSG++L V+ + YE ++R F + ++ Sbjct: 130 VDRFDFMEFMLHRDNAEILKQLFELFSGLDLRNA--SPDVLGDAYEWILRYFAPQKAKE- 186 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR+V+ L +L P +YDP G+GG L + HV + Sbjct: 187 GEVYTPREVIKLLVEIL----------DPRPGEEVYDPALGSGGMLIGSYLHVKEKFGES 236 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290 + + +GQE+ P T+A+ M+I ++ + G TL + F K Sbjct: 237 EAKKLF-LYGQEVNPTTYAIAEMNMMIHGIK-------DAKLAVGDTLLRPAFKEGEKLK 288 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF ++NPP+ + ++ + E + RF G P + ++ H+ Sbjct: 289 RFDVVIANPPWNQDGYGEETLKKAEFREE---RFKYGYPPNNSADWAWIQHMLAS----A 341 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GR IV+ + LF G A E +IR +++ DL+E ++ LP LF+ T + I Sbjct: 342 RDNGRIGIVIDNGALFRGGA---EKKIRSRIVKEDLLECVILLPEKLFYNTGAPGAIMIF 398 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + K +ER+GKV INA+ + +K + + +I+ Y E+ + Sbjct: 399 NKAKPKERKGKVLFINASLEYEKHPEV-RKLNRLGEKNIEKIVKAYEEFEDVE------- 450 Query: 471 RTFGYRRIKVLRPLRMS--------FILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 G+ R+ L ++ + ++ ++ W +L +++ +I + + Sbjct: 451 ---GFARVVSLDEIKENDFNLNVTLYVFPMEEEEEIDVKAEWEELKKINEE-LAEIDEKI 506 Query: 523 MQQIYPYGW 531 + + G+ Sbjct: 507 EEYLRELGY 515 >gi|298375955|ref|ZP_06985911.1| type I restriction-modification system, M subunit [Bacteroides sp. 3_1_19] gi|298266992|gb|EFI08649.1| type I restriction-modification system, M subunit [Bacteroides sp. 3_1_19] Length = 549 Score = 286 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 117/553 (21%), Positives = 204/553 (36%), Gaps = 80/553 (14%) Query: 4 FTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLA 61 T L +W+ A+DL G DF +L F LR L +E T+ + Y Sbjct: 1 MTIKEQHELGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYLSDNYIEATKKELGGDYPD 60 Query: 62 FGGSNIDL-------------------ESFVKVAGYSFYNTSE-------YSLSTLGSTN 95 + + ++ Y Y L+ + + Sbjct: 61 KAPEELKERGVSTPLQLWYRENPEDVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDD 120 Query: 96 TRNNLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145 LE YI SF + +F + + +S +L E+ LL K+ + Sbjct: 121 LLKTLEKGFKYIENESFDRAFQGLFSEINLNS--DKLGKNYEERNALLCKVITKIAEGIA 178 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 T ++ + YE+LI F + + A +F TP+ + + + ++ Sbjct: 179 QFST-DTDILGDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTQDPKSGMKKK 237 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + + D CG+G L + + + G + +GQE T+ + ML+ ++ Sbjct: 238 LERVLDFACGSGSLLLNVRHRMKANGGNIGK-----IYGQEKNITTYNLARMNMLLHGVK 292 Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 D I G +L D F ++NPPF +WE + + Sbjct: 293 -----DSEFEIHHGDSLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPTE-------E 340 Query: 318 NGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G+ RF GL S FL+H + L+ G AI+L LF G A E Sbjct: 341 MGKDFRFNNYGLAPKSAADFAFLLHGFHFLKQD----GTMAIILPHGVLFRGGA---EER 393 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR LL++ I+A++ LP +LFF T I + +L K + V INA+D + Sbjct: 394 IRTKLLKDGNIDAVIGLPANLFFSTGIPVCILVLKKCK---KSDDVLFINASDKENFEK- 449 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 GK++ + +I+D Y R+ + +SR + + +S + + Sbjct: 450 -GKRQNKLRTKDIDKIIDTYKQRKEEERYSRPVSMDEIERNGYNLNISRYVSIAKEDVKI 508 Query: 496 ARLEADITWRKLS 508 L+ + +L Sbjct: 509 DLLQVNKKLIELE 521 >gi|261403056|ref|YP_003247280.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanocaldococcus vulcanius M7] gi|261370049|gb|ACX72798.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanocaldococcus vulcanius M7] Length = 523 Score = 286 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 104/550 (18%), Positives = 213/550 (38%), Gaps = 59/550 (10%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 N +WK A+ L + + V+L LR L C R + ++ Sbjct: 12 EFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEDELSNPNSELYTE 71 Query: 70 ESFVKV---AGYSFYNTS---------EYSL--STLGSTNTRNNLESYIA----SFSDNA 111 + ++ FY + + + S N +++ I + D Sbjct: 72 DPELRKMILEDKDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRL 131 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K + S + + A + FS I + V IYE+ + +F Sbjct: 132 KNVIPKIYAQSPLDNHDYA----YLINKFSEISFGKEYKVKDVFGRIYEYFLGKFTEVEG 187 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TPR + L +L T++DP CG+GGF A+ + G Sbjct: 188 KLGGKFYTPRSLTKLIVDVLDI-----------KGGTIFDPACGSGGFFVSALEKLEGEG 236 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +GQ+ +P + + ++IR E D I+ G + D F Sbjct: 237 IDINEL---SIYGQDSDPMAYRLTKMNLIIRGAEGD--------IRIGDSYHDDKFMNMV 285 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F Y ++NPPF D + ++ + +G +P ++ + ++++H + Sbjct: 286 FDYVVANPPFNDSEW-DSNRIKPDDPRLRIGNKKVPVPPNNNANYMWILHFIYHTKS--- 341 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A V+++ L G E EIR+ ++ENDL+ IVA P LF+ ++ LW + Sbjct: 342 -NGKAGFVMANGALSAGNV---EGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIR 397 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K + +GKV INA +L+ + +++ I+ ++ +I+D + E+G+ ++ Sbjct: 398 KEKPDYMKGKVLFINAKNLY---KQISRRQNILTEEHINKIVDKFKMLESGENEEKIN-- 452 Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 G+ ++ + + ++L ++ + + + + L+ ++ + Sbjct: 453 ELGFAKVATIDEIAKNGYVLTPGRYVGVKIEDDGIPF-EVKMKEYSEELRGLLDEEEKLR 511 Query: 531 WAESFVKESI 540 V +++ Sbjct: 512 EKVKEVLDAL 521 >gi|28199936|ref|NP_780250.1| type I restriction-modification system DNA methylase [Xylella fastidiosa Temecula1] gi|182682691|ref|YP_001830851.1| type I restriction-modification system, M subunit [Xylella fastidiosa M23] gi|28058067|gb|AAO29899.1| type I restriction-modification system DNA methylase [Xylella fastidiosa Temecula1] gi|182632801|gb|ACB93577.1| type I restriction-modification system, M subunit [Xylella fastidiosa M23] gi|307578974|gb|ADN62943.1| type I restriction-modification system, M subunit [Xylella fastidiosa subsp. fastidiosa GB514] Length = 527 Score = 286 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 121/510 (23%), Positives = 207/510 (40%), Gaps = 78/510 (15%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTR 52 M+ A L IW+ A DL G DF +L R + L EP Sbjct: 1 MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQEPRT 60 Query: 53 SA--VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100 V Y + + V FY + + N L Sbjct: 61 GNGNVDFDYAQLSDAGAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120 Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146 S I S S+ + K +F+D D +S ++L ++ L K+ + + E Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVPKRNEKLVKLLEAIGDLPLTSSEGG 178 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+L++ + S + +F TP++V L T + + + K Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP CG+G L N V G +GQE+ T+ +C M + + Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284 Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + +I G TL+ + F +SNPP+ KW+ D +A+ RF Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334 Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P L S + F +H+ + L + G AAIV L+ G A E +IR++L++ Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 N+ ++A++ LP DLFF T IAT + +L K + ++A+ L+ G K Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440 Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRT 472 ++ +++ILD + +R++ + F+R++D Sbjct: 441 LSTAHQKKILDGFTARQDIEHFARLVDNSD 470 >gi|319410193|emb|CBY90529.1| putative type I restriction-modification system M protein [Neisseria meningitidis WUE 2594] Length = 514 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|30995437|ref|NP_439439.2| type I modification enzyme [Haemophilus influenzae Rd KW20] Length = 576 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 94/567 (16%), Positives = 191/567 (33%), Gaps = 87/567 (15%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------------ 55 +W +A+ L ++ ++L L+ + + + + Sbjct: 47 KLWASADKLRKQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLYLDRTFF 106 Query: 56 --REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI---ASFSDN 110 E+Y + ++ + A F+ + L + N + + FS Sbjct: 107 DTEEEYQEALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWGGKFSGV 164 Query: 111 AKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP------- 151 AK I + FD +L+ L + FS T Sbjct: 165 AKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEPVHLG 224 Query: 152 -DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++ ++YE+ + RF + + + TP+ +V L +L +Y Sbjct: 225 AKDILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML-----------EPYSGRVY 273 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP G+GGF + + + +GQE P T + M IR ++ D + Sbjct: 274 DPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGK 330 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + + ++ K+ + ++NP F K + R+ G P Sbjct: 331 YNA------DSFTQPQHIDKKMDFIMANPHFNDKEW-------WNESLADDPRWAYGTPP 377 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 + + +L H+ L G+ A++L++ + + E EIR+ ++ DL+E + Sbjct: 378 KGNANFAWLQHMIYHLSP----NGKIALLLANGSM--SSQTNNEGEIRKAIINADLVECM 431 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 VALP LF T I +W L+ K +R+G+V I+A + R D Sbjct: 432 VALPGQLFTNTKIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFTADDIA 486 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRKLSP 509 +I D + + S + + + + F+L E + + Sbjct: 487 KIADTLHAWQT---SDGYEDQAAFCKSATLEEIKNNDFVLTPGRYVGTAEQEDDGVPFAE 543 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFV 536 Q+ + + + + + Sbjct: 544 KMQNLTALLKEQFAKSAELEAEIKKNL 570 >gi|304387862|ref|ZP_07370036.1| type I restriction-modification system DNA-methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338127|gb|EFM04263.1| type I restriction-modification system DNA-methyltransferase [Neisseria meningitidis ATCC 13091] Length = 514 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 107/490 (21%), Positives = 190/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+K + F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTKPKLKDSKPFDAVVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A+ + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASSFFKKETN----NNVLTEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|229015568|ref|ZP_04172563.1| Type I restriction-modification system, M subunit [Bacillus cereus AH1273] gi|228745715|gb|EEL95722.1| Type I restriction-modification system, M subunit [Bacillus cereus AH1273] Length = 497 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 105/535 (19%), Positives = 192/535 (35%), Gaps = 69/535 (12%) Query: 18 NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--------AFGGSNIDL 69 A DL G +F IL R L +E +++ + Sbjct: 1 MANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFAEAWGNGEYREDLQ 60 Query: 70 ESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNAKAIFEDFDFSST 123 E + GY Y S + N ++E + DF + Sbjct: 61 EYLINELGYIITPQYLFSTFVKEIELGANGNFDIEMLQNGVKAIEASTMGADSQEDFENL 120 Query: 124 IARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 ++ ++ L+ K+ N + I D V V+ + YE++I +F + Sbjct: 121 FDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYEYMISQFAANAG 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A +F TP+ V + ++ I+ +YD TCG+G L Sbjct: 181 KKAGEFYTPQQVSRILAKIVTAGKTE--------IKDVYDGTCGSGSLLLRVGKEAK--- 229 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T+ + ML+ + +I+ TL + KR Sbjct: 230 -------VYNYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNADTLEEPQHLDKR 277 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F ++NPP+ KW D + E + L S F+ H + L Sbjct: 278 FEAIVANPPYSAKWSADDKFQDDERFSNY-----AKLAPKSKADFAFVQHFIHHLAD--- 329 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL 410 G A+VL LF G A E IR++L+E + ++A++ LP ++FF T+I T + +L Sbjct: 330 -NGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFFGTSIPTCILVL 385 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLD 469 +K + V I+A++ + GK + + D+ +I++ Y+SRE K+S Sbjct: 386 --KKCRKHDDNVIFIDASNEFEK----GKNQNHLADEHVEKIVNTYLSRETFDKYSYAAT 439 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + P + ++ + E + ++ + Sbjct: 440 LDEIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLEAIDEEIAKVDEELAAYFKE 494 >gi|126090304|ref|YP_001041759.1| type I restriction-modification system, M subunit [Shewanella baltica OS155] gi|125999935|gb|ABN64004.1| type I restriction-modification system, M subunit [Shewanella baltica OS155] Length = 863 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 98/494 (19%), Positives = 190/494 (38%), Gaps = 68/494 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L T + + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFLTNQGMTPEDIKALD 61 Query: 65 SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFSD----NAKAIFED 117 + + ++ + + S +N+ +++FS N K +F+ Sbjct: 62 EDDAETREYVQSNLGYFIAYDNLFSTWIDPKSDFDESNVRDALSAFSRLIHTNHKKLFDG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I V+ IYE+LI +F + Sbjct: 122 IFTTLETGLSKLGESPSKRTKAISDLLHLIKSI-PMNSNQGYDVLGYIYEYLIEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + + +YDPT G+G L N Sbjct: 181 GKKAGEFYTPHEVSLLMSHITAHELQH------KENIEIYDPTSGSGSLLI---NIGQAL 231 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286 + + + QEL+ T+ + +++R ++ + NI + G TL D Sbjct: 232 AQYADKADNITYYAQELKANTYNLTRMNLIMRGIK-------ATNIKTRNGDTLEDDWPY 284 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + +SNPP+ + W+ + RF GL + Sbjct: 285 FDESDPKETYNALYVDAVVSNPPYSQSWDPTHKESDPR-----YSRF--GLAPKTKADFA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G IVL LF G E +IR L+EN+ I+ I+ LP ++ Sbjct: 338 FLLHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGKIRTQLIENNHIDTIIGLPANI 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + +L K + + V +++A+ + K + ++I D + Sbjct: 391 FFGTGIPTVILVL---KQKRQNTDVLIVDASKHFIKE----GKNNKLQASDIKRITDAVI 443 Query: 458 SREN-GKFSRMLDY 470 +R++ KFS++++ Sbjct: 444 NRQSCPKFSQLVEK 457 >gi|225850848|ref|YP_002731082.1| type I restriction enzyme M protein (HsdM) [Persephonella marina EX-H1] gi|225645479|gb|ACO03665.1| type I restriction enzyme M protein (HsdM) [Persephonella marina EX-H1] Length = 898 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 124/615 (20%), Positives = 225/615 (36%), Gaps = 98/615 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L N +W+ A L G + + +L ++ + + Sbjct: 1 MAIKKTQLYNHLWEAANALRGGMDASQYKDYVLTILFVKYVTD--------------KYK 46 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-----SFSDNAKAIFEDF 118 G + + F+ G SF L + N+ I +N D Sbjct: 47 GDPYNEDGFIVPEGGSF--------DDLIEAKGKKNIGERINIVLSKLAEENGLKGVIDI 98 Query: 119 DFSSTIARL----EKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171 +L EK L K+ F EL+ D ++ ++YE+ +++F +E Sbjct: 99 VDFDDDTKLGTGKEKVDRLTKLIGIFENPELNFSRNRSDGDDILGDVYEYFMKKFATEAG 158 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP +V + ++ + +T YDPTCG+G L + Sbjct: 159 KSKGQFYTPAEVSRVMAKIIGVEK------ATSPDQTAYDPTCGSGSLLLKVAD------ 206 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289 + P + +GQE++ + M++ I QG+TLS F Sbjct: 207 ---EAPVKISLYGQEIDINVANIARMNMILHG-------RPDAEIAQGNTLSHPKFKNPD 256 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 K F + ++NPPF +K D V KN + RF G+P +G FL+H L Sbjct: 257 GSLKTFDFAVANPPFSQKNWMDGVNV----KNDQYHRFDDGVPPAKNGDYAFLLHFIKSL 312 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ AI+L LF G A E+EIR+ L++ I+ I+ LP +LF+ T I Sbjct: 313 KSK----GKGAIILPHGVLFRGNA---EAEIRKNLIKKGYIKGIIGLPPNLFYGTGIPAV 365 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + ++ + + R+G + +I+A+ + R +G K R + + +I+D +V+ + Sbjct: 366 ILVIDKKNAQARKG-IFIIDASKGY---RKDGNKNR-LRERDIHKIVDTFVNFKEIP--- 417 Query: 467 MLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 GY R + + + + L+ + R + ++ I K + + Sbjct: 418 -------GYSRMVSLEEIEKNDYNLN---IPRYIESTEKEDIQDIYAHLHGGIPKRDIDK 467 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585 I + E + I+ A+ V + + Sbjct: 468 IEILNVFNDLKNRLFRKKEEGYYTLNVD-------IDNLTEIIENAEEVKEFKSHALAVF 520 Query: 586 NLTEYENVPYLESIQ 600 EN+P L I Sbjct: 521 EKWTDENMPILTGID 535 >gi|295105616|emb|CBL03160.1| type I restriction system adenine methylase (hsdM) [Faecalibacterium prausnitzii SL3/3] Length = 520 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 116/560 (20%), Positives = 205/560 (36%), Gaps = 78/560 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51 T+ L IW A+DL G DF +L R + + Sbjct: 4 TKKEQEREELHRAIWAIADDLRGAVDGWDFKSYVLGTMFYRYISENIASYINQGEIDAGN 63 Query: 52 -----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 + + + F + F N N LE+ Sbjct: 64 PDFRYEDMSDAEAEQAREGLVQEKGFFILPSELFCNV---RAKAANDENLNETLETVFRH 120 Query: 107 FSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151 ++AK +F+D+D +S +L ++ L K+ + + L Sbjct: 121 IEESAKGSSSEGQFAGLFDDYDVNS--NKLGATVAKRNEKLVKLLNGVADMNLGDVKEHD 178 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE+L+ + S + +F TP DV L T L + K +YD Sbjct: 179 IDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKEINK--------VYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L A + + GQE+ T+ +C M + +E D Sbjct: 231 PACGSGSLLLKAEKVL------GRDAVRNGFFGQEINITTYNLCRINMFLHDIEFDKF-- 282 Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 +I TL+ + F +SNPP+ KW D++ + RF P L Sbjct: 283 ---DIACEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDENPL-----LINDPRFAPAGVL 334 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F+MH L G AAIV ++ G A E +IR++L++N+ I+ Sbjct: 335 APKSKADLAFIMHSLAWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFID 387 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 I+ LP++LFF T+IAT + +L KT+ KV I+A+ + N + + Sbjct: 388 CIIQLPSNLFFGTSIATCIMVLKKGKTD---NKVLFIDASSECVKVTN----NNKLTPEN 440 Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 +I+D + R E FS + +Y + + + + ++ + ++ Sbjct: 441 INKIVDTFAQRTEEAHFSHLAEYSEVQENDYNLSVSTYVEAKDTREKIDIVKLNAEIAQI 500 Query: 508 SPLHQSFWLDILKPMMQQIY 527 ++ + ++ +I Sbjct: 501 -VARENELRAAIDQIVAEIE 519 >gi|51594888|ref|YP_069079.1| type I restriction-modification system, methyltransferase subunit (N-6 DNA methylase) [Yersinia pseudotuberculosis IP 32953] gi|51588170|emb|CAH19777.1| putative type I restriction-modification system, methyltransferase subunit (N-6 DNA Methylase) [Yersinia pseudotuberculosis IP 32953] Length = 863 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 104/496 (20%), Positives = 195/496 (39%), Gaps = 66/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L TR + + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFSDNAKAIFE 116 D ++ V G Y + +L S +N R+ L ++ S K +FE Sbjct: 62 EE-DADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE 120 Query: 117 DF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + +++L ++ + + I V+ IYE+L+ +F + Sbjct: 121 GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAAN 179 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP +V L + ++ +YDPT G+G L + Sbjct: 180 AGKKAGEFYTPHEVSVLMSNIIAYELKH------KDTIKIYDPTSGSGSLLINIGEAFE- 232 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286 + K + + QEL+ T+ + +++R +++ + + G TL D Sbjct: 233 --KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPFF 285 Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + +SNPP+ + W+ + RF GL + F Sbjct: 286 DDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAF 338 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G AIVL LF G E +IR+ L+E + I+ I+ LP ++F Sbjct: 339 LLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTIIGLPANIF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T I T + +L K + + V +++A+ + K + ++I D + Sbjct: 392 FGTGIPTVILVL---KQKRQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVIK 444 Query: 459 REN-GKFSRMLDYRTF 473 RE+ KFS+++ +T Sbjct: 445 RESIDKFSQLVSKQTL 460 >gi|268610089|ref|ZP_06143816.1| type I restriction-modification system methyltransferase subunit like protein [Ruminococcus flavefaciens FD-1] Length = 523 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 100/484 (20%), Positives = 192/484 (39%), Gaps = 69/484 (14%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +WK+A+ L G + ++ V+L L+ E R + EKY G +D +F Sbjct: 17 LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKMIAEKY---GDKFVDNIAFY- 72 Query: 75 VAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127 FY S +S + +++ I + K + +RL Sbjct: 73 TKDNVFYLPAESRWSFIMENAKQDDIALKIDTALFTIEKTNPALKGALP----DNYYSRL 128 Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + I D + ++ IYE+ + +F +G +F TP+ +V+L Sbjct: 129 HIDTSKLASLLDEIDKINT--DDSENDIIGRIYEYFLGKFALAEGKGKGEFYTPKCIVNL 186 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 L+ D LYDP CG+GG ++ V + K + +GQE Sbjct: 187 IAELIEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 T + + IR + ++ + +T + D + Y ++NPPF Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 282 Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + E++ + R+ G +P S+ + +++++ +KL + G A +L++ L Sbjct: 283 --QKEWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 336 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK---- 421 + E +IR+ L++N+L+EAI+ LP LF+ T+I+ LWIL+ K K Sbjct: 337 SDDGT---ELKIRKQLIDNNLVEAIIILPRSLFYTTDISVTLWILNKNKKARDVEKNGET 393 Query: 422 ---------VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-DYR 471 + ++ + + K + ++ R ++ Y + + + D Sbjct: 394 IHYRDREREILFMDLRQMGSPFEK---KYVELTEEDRAKVTATYHAWQQKGYEETYQDIP 450 Query: 472 TFGY 475 F Y Sbjct: 451 EFCY 454 >gi|254672640|emb|CBA06429.1| type I restriction enzyme EcoR124II M protein [Neisseria meningitidis alpha275] Length = 514 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDYHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|117676102|ref|YP_863678.1| type I restriction-modification system, M subunit [Shewanella sp. ANA-3] gi|117614926|gb|ABK50379.1| type I restriction-modification system, M subunit [Shewanella sp. ANA-3] Length = 874 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 97/497 (19%), Positives = 196/497 (39%), Gaps = 63/497 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L T+ + + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKALN 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLS-------TLGSTNTRNNLESYIASFSDNAKAIFED 117 ++ + + +N R+ L ++ S K +FE Sbjct: 62 EEDADTVKYIQDNLGYFIAYDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFEG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I ++ V+ IYE+LI +F + Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQGY-DVLGYIYEYLIEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + V Sbjct: 181 GKKAGEFYTPHEVSVLMSHIIAHELKH------KDTIEIYDPTSGSGSLLINIGEAVE-- 232 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + K + + QEL+ T+ + +++R +++ + + G TL D Sbjct: 233 -KYAKSKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ + W+ + RF GL + FL Sbjct: 287 ENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G IVL LF G E EIR+ L+E + I+AI+ LP ++FF Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIEQNHIDAIIGLPANIFF 392 Query: 400 RTNIATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 T I T + +L ++ ++ + V +++A+ + K + ++I+D + Sbjct: 393 GTGIPTVILVLKQKRGSIDKPQNDVLIVDASKHFVKE----GKNNKLQASDIKRIVDAVI 448 Query: 458 SRENGK-FSRMLDYRTF 473 +R++ + FS+++ +T Sbjct: 449 NRDSIEKFSQVVSKQTL 465 >gi|312880991|ref|ZP_07740791.1| type I restriction-modification system, M subunit [Aminomonas paucivorans DSM 12260] gi|310784282|gb|EFQ24680.1| type I restriction-modification system, M subunit [Aminomonas paucivorans DSM 12260] Length = 548 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 120/552 (21%), Positives = 206/552 (37%), Gaps = 75/552 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLA 61 A L IW+ A DL G DF +L R + L + + Y A Sbjct: 32 AELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYLNEQERRAGTPDFDYAA 91 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFE 116 + + V FY + + + + L+ A +A+ Sbjct: 92 LSDAEAEQGRDETVKEKGFYILPSELFANVRARARRDEDLNETLDRVFAHIEGSARGTDS 151 Query: 117 DFDFSSTIARLE------------KAGLLYKICKNFSGIELH-----PDTVPDRVMSNIY 159 + DF L+ + L K+ + L + + Y Sbjct: 152 EDDFKGLFDDLDVNSGKLGPTVAKRNEKLVKLLDAIGDLPLAGGGGGFADNTIDLFGDAY 211 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+L++ + S + +F TP++V L + + K +YDP CG+G Sbjct: 212 EYLMQMYASTAGKSGGEFYTPQEVSELLAHIAAAGKREVNK--------VYDPACGSGSL 263 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + G GQE+ T+ +C M + + + +I G Sbjct: 264 LLQ---FLKVLGPD---RVRQGFFGQEINLTTYNLCRINMFLHDVNYEKF-----HIAHG 312 Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ +WE D + + RF P L S + Sbjct: 313 DTLTDPAHGDDEPFEAIVSNPPYSIRWEGDANPL-----LINDPRFAPAGVLAPKSKADL 367 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F MH+ + L + G AAIV L+ G A E++IRR+L++N+ ++A++ LP D Sbjct: 368 AFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRRYLIDNNYVDAVIQLPAD 420 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T IAT + +L K + ++A+ G K R ++ + R++IL Y Sbjct: 421 LFFGTTIATCVIVLKKSKGDNAT---LFLDASGECV---RSGNKNR-LDPEHRQKILQAY 473 Query: 457 VSRENGK-FSRMLDYRTF---GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 +R + F+R++D GY I V + + + L A+I Sbjct: 474 RARRDVPHFARLVDNEEIARNGYN-IAVSSYVEQRDTREAVDIRALNAEIARIVARQGEL 532 Query: 513 SFWLDILKPMMQ 524 +D L ++ Sbjct: 533 RAQIDALVADLE 544 >gi|260664498|ref|ZP_05865350.1| type I restriction-modification system, M subunit [Lactobacillus jensenii SJ-7A-US] gi|260561563|gb|EEX27535.1| type I restriction-modification system, M subunit [Lactobacillus jensenii SJ-7A-US] Length = 550 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 97/578 (16%), Positives = 211/578 (36%), Gaps = 79/578 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSAV 55 S + +W A +L G+ +++ IL F R L L+ ++ Sbjct: 2 SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLKKNDILDIEDGESI 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRNNLESYIASF-- 107 + Y+ + + +A Y + + ++L ++ + + F Sbjct: 62 NDAYVREASGDDLADYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121 Query: 108 ----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 S + + +F D + + ++A + KI + IE + D Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI- 180 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + IYE+LI +F + + +F TP +V + L+ +YDPTC Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLK-----GEPEEFEVYDPTC 235 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L V K P ++ +GQE T+ + +++ +E + Sbjct: 236 GSGSLLLT----VQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNA 291 Query: 275 NIQQGSTLSKDLF-------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326 + + D F ++NPP+ W+ +++ + + RF Sbjct: 292 DTLEAD--WPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNNENKL-------KDPRFSAY 342 Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + F++H L G AIVL LF G A E IR+ ++E + Sbjct: 343 GKLAPKTKADYAFVLHGLYHLSPE----GTMAIVLPHGVLFRGAA---EGVIRQNIIEKN 395 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++A++ LP +LF+ +I T + + + + + I+A+ + GK + + Sbjct: 396 YLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEK----GKNQNKLT 448 Query: 446 DDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 ++ +I+ Y+ RE+ K++ + + P ++ ++ Sbjct: 449 EENIDKIISTYLKREDVDKYAHKAELDEIKENDYNLNIP---RYVDTFEPEPPVDLGKVA 505 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 +L ++Q + K ++ + + ++ + Sbjct: 506 DELEEVNQK-IAENKKELLGMLKELTTDDDDLRAQLDK 542 >gi|229819004|ref|YP_002880530.1| type I restriction-modification system, M subunit [Beutenbergia cavernae DSM 12333] gi|229564917|gb|ACQ78768.1| type I restriction-modification system, M subunit [Beutenbergia cavernae DSM 12333] Length = 524 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 114/495 (23%), Positives = 196/495 (39%), Gaps = 75/495 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSAV 55 M T A L IW+ A DL G DF +L F R + L R A Sbjct: 1 MNRETQ-RAELHKTIWRIANDLRGSVDGWDFKAYVLGFLFYRYISEDLTAYLNAGERDAG 59 Query: 56 REKYLAFGGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRN-NLESYIA----- 105 + N + VAG F+ + + + R+ NL + Sbjct: 60 STDFEYVTAPNSVVADHEVVAGIVAEKGFFIRPSELFANVRARAARDPNLNETLERVFRT 119 Query: 106 --------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ K +F+D D +S +L ++ L ++ + L T + Sbjct: 120 IESSAVGTEAEDDLKGLFDDVDVNS--NKLGPTVAKRNEKLVRLLDAIGDLNLGNGTFSE 177 Query: 153 ---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + YE+L++ + S + ++ TP++V L + + ++ K + Sbjct: 178 NKIDAFGDAYEYLMQMYASAAGKSGGEYYTPQEVSELLARITVVGKTSVNK--------V 229 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDP CG+G L + G GQE+ T+ +C M + + Sbjct: 230 YDPACGSGSLLLKFRKVLGKGGVRQG------YFGQEINLTTYNLCRINMFLHDV----- 278 Query: 270 RDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 +I G TL + + F +SNPP+ KW D + + RF P Sbjct: 279 GFEHFDIAHGDTLIDPMHWDDEPFEAIVSNPPYSIKWAGDANPL-----LINDPRFAPAG 333 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 L S + F MH+ + L + G AAIV L+ G A E +IR++L++N+ Sbjct: 334 VLAPKSKADLAFTMHMLSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRKYLIDNNF 386 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 ++A++ LP DLFF T IAT + +L K + V I+A+ + G + + + Sbjct: 387 VDAVIQLPPDLFFGTAIATCIIVLKKSKADNG---VLFIDASAQFVR----GGNKNKLTE 439 Query: 447 DQRRQILDIYVSREN 461 +++ILD + +R++ Sbjct: 440 ANQQRILDAFTTRDD 454 >gi|319896988|ref|YP_004135183.1| type i restriction enzyme hindviip m protein [Haemophilus influenzae F3031] gi|317432492|emb|CBY80849.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae F3031] Length = 586 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 95/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55 L +W +A+ L ++ ++L L+ + + + + Sbjct: 51 LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELTDPENVLY 110 Query: 56 --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104 EKY + ++ + A F+ + L + N + + Sbjct: 111 LDRTFYDTEEKYQDALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 168 Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151 FS AK I + FD +L+ L + FS T Sbjct: 169 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 228 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 229 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 277 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 278 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NMSIYGQEFNPTTWKLAAMNMAIRGI 334 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + R+ Sbjct: 335 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 381 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EI + ++ Sbjct: 382 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIHKGIINA 435 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 436 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 490 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I D + + S + + + + F+L E + Sbjct: 491 TADDIAKISDTLHAWQK---SDGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 547 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 548 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 580 >gi|59800848|ref|YP_207560.1| putative type I restriction-modification system methyltransferase protein [Neisseria gonorrhoeae FA 1090] gi|254493318|ref|ZP_05106489.1| type I restriction-modification system protein [Neisseria gonorrhoeae 1291] gi|268594456|ref|ZP_06128623.1| type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae 35/02] gi|268598584|ref|ZP_06132751.1| type I restriction-modification system protein [Neisseria gonorrhoeae MS11] gi|268686196|ref|ZP_06153058.1| type I restriction-modification system protein [Neisseria gonorrhoeae SK-93-1035] gi|293399447|ref|ZP_06643600.1| type I restriction-modification system, M subunit [Neisseria gonorrhoeae F62] gi|59717743|gb|AAW89148.1| putative type I restriction-modification system methyltransferase protein [Neisseria gonorrhoeae FA 1090] gi|226512358|gb|EEH61703.1| type I restriction-modification system protein [Neisseria gonorrhoeae 1291] gi|268547845|gb|EEZ43263.1| type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae 35/02] gi|268582715|gb|EEZ47391.1| type I restriction-modification system protein [Neisseria gonorrhoeae MS11] gi|268626480|gb|EEZ58880.1| type I restriction-modification system protein [Neisseria gonorrhoeae SK-93-1035] gi|291610016|gb|EFF39138.1| type I restriction-modification system, M subunit [Neisseria gonorrhoeae F62] Length = 514 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 188/488 (38%), Gaps = 63/488 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N +E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + + I F DF +T +RL +K L + K + ++ + + + Y Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + + +I+ G Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ W D RF P L S Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL + Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T IA + +LS K +Q I+A+ + N ++ ++ +I+ ++ Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIAEIVKLF 442 Query: 457 VSRENGKF 464 + + Sbjct: 443 ADKADVPH 450 >gi|239998596|ref|ZP_04718520.1| putative type I restriction-modification system methyltransferase protein [Neisseria gonorrhoeae 35/02] gi|240112514|ref|ZP_04727004.1| putative type I restriction-modification system methyltransferase protein [Neisseria gonorrhoeae MS11] gi|240127799|ref|ZP_04740460.1| putative type I restriction-modification system methyltransferase protein [Neisseria gonorrhoeae SK-93-1035] Length = 513 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 188/488 (38%), Gaps = 63/488 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 --DNAKAIFEDFD-FSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + + I FD F +T +RL +K L + K + ++ + + + Y Sbjct: 120 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 179 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 180 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 231 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + + +I+ G Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELG 280 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ W D RF P L S Sbjct: 281 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL + Sbjct: 336 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 388 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T IA + +LS K +Q I+A+ + N ++ ++ +I+ ++ Sbjct: 389 LFYGTCIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIAEIVKLF 441 Query: 457 VSRENGKF 464 + + Sbjct: 442 ADKADVPH 449 >gi|217034273|ref|ZP_03439690.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10] gi|216943245|gb|EEC22710.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10] Length = 543 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 118/596 (19%), Positives = 220/596 (36%), Gaps = 87/596 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + ++ K + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-----KARNDAKNNTYS 55 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + FY E L+ G + L IA ++ + K + + DF+ Sbjct: 56 EIEVPQR--------CFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 210 KKGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDSKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 470 SYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525 >gi|160945140|ref|ZP_02092366.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii M21/2] gi|158442871|gb|EDP19876.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii M21/2] Length = 525 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 116/560 (20%), Positives = 205/560 (36%), Gaps = 78/560 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51 T+ L IW A+DL G DF +L R + + Sbjct: 9 TKKEQEREELHRAIWAIADDLRGAVDGWDFKSYVLGTMFYRYISENIASYINQGEIDAGN 68 Query: 52 -----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 + + + F + F N N LE+ Sbjct: 69 PDFRYEDMSDAEAEQAREGLVQEKGFFILPSELFCNV---RAKAASDENLNETLETVFRH 125 Query: 107 FSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151 ++AK +F+D+D +S +L ++ L K+ + + L Sbjct: 126 IEESAKGSSSEGQFAGLFDDYDVNS--NKLGATVAKRNEKLVKLLNGVADMNLGDVKEHD 183 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE+L+ + S + +F TP DV L T L + K +YD Sbjct: 184 IDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKEINK--------VYD 235 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L A + + GQE+ T+ +C M + +E D Sbjct: 236 PACGSGSLLLKAEKVL------GRDAVRNGFFGQEINITTYNLCRINMFLHDIEFDKF-- 287 Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 +I TL+ + F +SNPP+ KW D++ + RF P L Sbjct: 288 ---DIACEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDENPL-----LINDPRFAPAGVL 339 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F+MH L G AAIV ++ G A E +IR++L++N+ I+ Sbjct: 340 APKSKADLAFIMHSLAWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFID 392 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 I+ LP++LFF T+IAT + +L KT+ KV I+A+ + N + + Sbjct: 393 CIIQLPSNLFFGTSIATCIMVLKKGKTD---NKVLFIDASSECVKVTN----NNKLTPEN 445 Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 +I+D + R E FS + +Y + + + + ++ + ++ Sbjct: 446 INKIVDTFAQRTEEAHFSHLAEYSEVQENDYNLSVSTYVEAKDTREKIDIVKLNAEIAQI 505 Query: 508 SPLHQSFWLDILKPMMQQIY 527 ++ + ++ +I Sbjct: 506 -VARENELRAAIDQIVAEIE 524 >gi|187933312|ref|YP_001886270.1| type I restriction-modification system, M subunit [Clostridium botulinum B str. Eklund 17B] gi|187721465|gb|ACD22686.1| type I restriction-modification system, M subunit [Clostridium botulinum B str. Eklund 17B] Length = 529 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 99/501 (19%), Positives = 190/501 (37%), Gaps = 80/501 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----------TR 52 + S+ N +W A +L G +++ IL F R L E Sbjct: 1 MNNNIKSITNKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEEYLLKNNVIDVIEG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIAS 106 ++ E Y + + + ++ Y + + +L S ++ ++ + Sbjct: 61 ESINESYNSQVDESELEDYLQDISASLGYAIAPKDTWQSLIDKINDSQVIPSDYQTIFDN 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ NA + +F D + + + E+A L I K IE + D Sbjct: 121 FNKNAELNKEAVKDFRGVFNDINLGDSRLGNSTNERAKSLNNIVKLVDSIEYKGNDGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + + + ++YDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTEGVE-----KSDELFSVYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L + + GQEL T+ + +++ + + + Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHGISYNNMVLSN 287 Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D G + F ++NPP+ KW+ D+ + + RF Sbjct: 288 A-----DTLESDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRF 335 Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L S F++H L G AIVL LF G A E +IR L+ Sbjct: 336 SEYGKLAPASKADYAFILHSIYHLNKT----GTMAIVLPHGVLFRGAA---EGKIREALI 388 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + ++ I+ LP +LF+ T+I T + +L + + + I+A++ + +N + Sbjct: 389 GKNYLDTIIGLPANLFYGTSIPTVILVLKKNRENK---DILFIDASNDFEKNKN----QN 441 Query: 443 IINDDQRRQILDIYVSRENGK 463 + D+ +I+ Y R++ Sbjct: 442 NLRDEDIDKIIKTYKERKDAP 462 >gi|238855187|ref|ZP_04645508.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 269-3] gi|282934313|ref|ZP_06339583.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 208-1] gi|313472057|ref|ZP_07812549.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 1153] gi|238832216|gb|EEQ24532.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 269-3] gi|239530086|gb|EEQ69087.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 1153] gi|281301597|gb|EFA93871.1| type I restriction-modification system, M subunit [Lactobacillus jensenii 208-1] Length = 550 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 92/498 (18%), Positives = 187/498 (37%), Gaps = 74/498 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSAV 55 S + +W A +L G+ +++ IL F R L L+ ++ Sbjct: 2 SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLKKNDILDIEDGESI 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRNNLESYIASF-- 107 + Y+ + + +A Y + + ++L ++ + + F Sbjct: 62 NDAYVREASGDDLADYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121 Query: 108 ----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 S + + +F D + + ++A + KI + IE + D Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI- 180 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + IYE+LI +F + + +F TP +V + L+ +YDPTC Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLK-----GEPEEFEVYDPTC 235 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L V K P ++ +GQE T+ + +++ +E + Sbjct: 236 GSGSLLLT----VQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNA 291 Query: 275 NIQQGSTLSKDLF-------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326 + + D F ++NPP+ W+ +++ + + RF Sbjct: 292 DTLEAD--WPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNNENKL-------KDPRFSAY 342 Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + F++H L G AIVL LF G A E IR+ ++E + Sbjct: 343 GKLAPKTKADYAFVLHGLYHLSPE----GTMAIVLPHGVLFRGAA---EGVIRQNIIEKN 395 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++A++ LP +LF+ +I T + + + + + I+A+ + GK + + Sbjct: 396 YLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEK----GKNQNKLT 448 Query: 446 DDQRRQILDIYVSRENGK 463 ++ +I+ Y+ RE+ Sbjct: 449 EENIDKIISTYLKREDVD 466 >gi|209523721|ref|ZP_03272274.1| type I restriction-modification system, M subunit [Arthrospira maxima CS-328] gi|209495753|gb|EDZ96055.1| type I restriction-modification system, M subunit [Arthrospira maxima CS-328] Length = 513 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 120/490 (24%), Positives = 195/490 (39%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 MT T A+L IW+ A D+ G DF + +L R + + Sbjct: 1 MT-STQQRAALQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTSYAEGGDDSID 59 Query: 59 YLAFGGSNIDLE---SFVKVAGYSFY--------NTSEYSLSTLGST--NTRNNLESYIA 105 Y S+I + +K GY Y S + +L + +ES Sbjct: 60 YAKLSDSDIPDDFKDDAIKTKGYFIYPSQLFANIAASANTNESLNTDLAAIFAAIESSAN 119 Query: 106 SF--SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + + K +F DF +T RL +K L + K +G++ + + Sbjct: 120 GYPSEPDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGGFDASHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP CG+G Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQQVSRLIAQLAMHQQTSVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H D +GQE+ + + M + + + NIQ Sbjct: 230 SLLLQAKKHFDDHRIEEG------FYGQEINHTNYNLARMNMFLHNINYNKF-----NIQ 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL+ F ++ F +SNPP+ KW D RF P L S Sbjct: 279 LGNTLTDPHFGDEKPFDAIVSNPPYSVKWVGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G A E++IR++L++N+ +E ++AL Sbjct: 334 DFAFVLHCLSYLSSS----GRAAIVCFPGIFYRGGA---EAKIRKYLVDNNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T IA + +LS K + Q I+A+ L+ N + DD +I+ Sbjct: 387 PNLFFGTPIAVTVLVLSKDKPDSTT---QFIDASGLFKKETN----NNTLTDDHIAEIMG 439 Query: 455 IYVSRENGKF 464 ++ S+EN Sbjct: 440 VFDSKENVDH 449 >gi|297250308|ref|ZP_06864065.2| type I restriction-modification system, M subunit [Neisseria polysaccharea ATCC 43768] gi|296839226|gb|EFH23164.1| type I restriction-modification system, M subunit [Neisseria polysaccharea ATCC 43768] Length = 514 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 187/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ R F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGT---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|90580558|ref|ZP_01236363.1| hsdM site-specific DNA-methyltransferase, type I modification [Vibrio angustum S14] gi|90438216|gb|EAS63402.1| hsdM site-specific DNA-methyltransferase, type I modification [Photobacterium angustum S14] Length = 567 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 97/554 (17%), Positives = 187/554 (33%), Gaps = 96/554 (17%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56 L +W A+ L + +L ++ + A + + ++ Sbjct: 9 LKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQEEIKADLANPEHEYY 68 Query: 57 -------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--------------- 94 E+ LA + + F+ +E L Sbjct: 69 IDPADFSEEELAQEIAIELEQRDFYTEKNVFWLPTESRWQFLQDNGPRVIGGADLEIDGK 128 Query: 95 --------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL- 145 + +N I + K + + I + L ++ + I Sbjct: 129 VKKITSVGHLIDNALEGIERDNPKLKGVLNKSYAALKIDQ----AKLNELINLIATIPFV 184 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 H D ++ ++YE+++ +F + F TP +V L ++ Sbjct: 185 HADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMI-----------EPF 233 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETHAVCVAGML 260 +YDP G+GGF + + + +I + +GQE T + M Sbjct: 234 EGRVYDPAMGSGGFFVQSEKFIERRANQKEIDPLTQKQKISIYGQEYNHTTWQLAAMNMA 293 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 IR L+ D ++ + ST + R + ++NPPF K + Sbjct: 294 IRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT-------GVDDN 340 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 RF G P + + + ++ H+ + L G +A ++ + S E IR+ Sbjct: 341 DPRFKYGQPPVGNANFAWMQHMLHHL---SADGSQALLLANGSMSSTTNN---EGTIRQA 394 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGKVQLINATDL 430 L+E DLIE +VALP LF T I +W L+ KT R+G+V I+ +L Sbjct: 395 LIEKDLIECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRARKGEVLFIDVRNL 454 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKVLRPLRMSF 488 R D ++ D+Y + + G+ + Y G+ + + + + F Sbjct: 455 GYMKDRV---LRDFTRDDIEKVADLYHAWKTGEEVNGIAYEDQAGFCKSVTLEEITKHDF 511 Query: 489 ILDKTGLARLEADI 502 +L ++ Sbjct: 512 VLTPGRYVGATEEL 525 >gi|46143389|ref|ZP_00135350.2| COG0286: Type I restriction-modification system methyltransferase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208115|ref|YP_001053340.1| putative type I modification enzyme [Actinobacillus pleuropneumoniae L20] gi|126096907|gb|ABN73735.1| putative type I modification enzyme [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 521 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 90/482 (18%), Positives = 169/482 (35%), Gaps = 74/482 (15%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA------------FGG 64 K A+ L ++ ++L L+ + + R + ++ Sbjct: 3 KAADKLRQQLDAANYKHIVLGLIFLKYVSDSFTAQRERLSAQFRDPNSDYYLSDITTEEI 62 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI------ASFSDNAKAIFEDF 118 + E F+ + + + R NL I ++ F+ Sbjct: 63 ESELEERDYYTQDNVFWVPQIARWNEIKA-VVRANLGDTIFENKTFKGVANLIDEAFDAI 121 Query: 119 -----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP--------DRVMSNIYEH 161 I R+ +L + + FS T+ ++ ++YE+ Sbjct: 122 EKDNPKLKGVIQRISSYNVDESILIGLVELFSDTNFTHPTLNGKPVSLAAKDILGHVYEY 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + +F + + TP+ +V L +L +YDP G+GGF Sbjct: 182 FLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYEGRIYDPAMGSGGFFV 230 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + + P + +GQE P T + M IR L D + + T Sbjct: 231 QTERFIREHQGN---PNRVSIYGQEFNPTTWKLAAMNMAIRGLSFDFGKGNA------DT 281 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 S KR + ++NPPF ++ R+ G P S+ + +L H Sbjct: 282 FSNPQHLDKRMDFVMANPPFNMNEWWNQSLAN-------DPRWKFGTPPSSNANFAWLQH 334 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L G+ A++L++ + + E EIRR ++ DL+EA++ALP+ LF T Sbjct: 335 MIYHLSEK----GKMALLLANGSMSSNTNN--EGEIRRNIVRADLVEAMIALPSQLFTNT 388 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 I +W+L+ K +G+V I+A L R + + Y + Sbjct: 389 QIPACIWVLNKAKPR--KGEVLFIDARQLGYMKTRV---MRDFTPKDIASVAETYHQWQK 443 Query: 462 GK 463 G+ Sbjct: 444 GE 445 >gi|15645469|ref|NP_207643.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 26695] gi|2313984|gb|AAD07898.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 26695] Length = 527 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 123/567 (21%), Positives = 210/567 (37%), Gaps = 80/567 (14%) Query: 2 TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRS 53 S L N IWK A +L G DF + +L R + + E + Sbjct: 6 NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKR 65 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYI-ASFSD-- 109 Y + + F+ + L + +L + F++ Sbjct: 66 DPSFDYAKLSDEKAERGRKHLIEQKGFFIPPSALFCNALKNACHNEDLNVTLQNIFNEIE 125 Query: 110 ----------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155 N K +F D D +S + + L KI + G++L V Sbjct: 126 KSSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILEAIGGMQLGDYLKSGIDVF 185 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+L+ + S + +F TP++V L + L +++ K +YDP CG Sbjct: 186 GDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNK--------VYDPCCG 237 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + D GQE+ T+ +C M + + + Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286 Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL + F +SNPP+ KW D + + RF P L + Sbjct: 287 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPI-----LINDERFSPAGVLAPKN 341 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F MH+ + L G AAIV L+ G A E++IR +L++ ++I+ ++A Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIA 394 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF T+IAT + +L K ++ I+A+ + EGKK + + R +I Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFV---KEGKK-NKLKERNREKI 447 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 L Y+ R+ K L + + + L E + L+ Sbjct: 448 LQTYIERKEIKHFCALAN---------IEKIKENDYNLSVNRYVEQEDTKEAIDIKALN- 497 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539 +I + + +Q ES +KE Sbjct: 498 ---SEIAQIVEKQSALRNRLESIIKEL 521 >gi|294793954|ref|ZP_06759091.1| type I restriction-modification system, M subunit [Veillonella sp. 3_1_44] gi|294455524|gb|EFG23896.1| type I restriction-modification system, M subunit [Veillonella sp. 3_1_44] Length = 531 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 197/491 (40%), Gaps = 72/491 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 A L ++ A+ L G + +L + L L + V + Y + + Sbjct: 3 AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLES--TVVKAYKSLDEYDTV 60 Query: 69 LES--------FVKVAGYSF---------YNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + + F Y+ L + + + ++N + + Sbjct: 61 AKQTELYKSYILNDKSKAFFIATMSDTLGYHIEPQYLFSELANSVKDNSFELVHLRNAFV 120 Query: 112 K---------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + +F+D D S + ++ + ++ K +++ V+ + Y Sbjct: 121 RLETAYKQFEGLFDDIDLDSKQLGVDANQRNITISEVIKKLDEVDVL--GHDGDVIGDAY 178 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F + + A +F TP+ V ++ ++ + T+YDPT G+G Sbjct: 179 EYLIGEFAAGSGKKAGEFYTPQQVSNMMAQIVTIGQEDT------PSFTVYDPTMGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ P + HGQEL T+ + +++ + ++ +R + G Sbjct: 233 MLNVRKYL-------NNPDRVQYHGQELNVTTYNLARMNLILHEVNAEDQR-----LHNG 280 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL+KD T + + + + NPP+ KW D ++ R+G L S Sbjct: 281 DTLNKDWPTDEPYMFDSVVMNPPYSAKWSADPTFMDDAR----FNRYG-KLAPKSKADFA 335 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +L Sbjct: 336 FLLHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGIIRKKLLEDGSIYAVIGMPANL 388 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL + V I+A++ +T +N + + + ++I+D Y Sbjct: 389 FFGTSIPTTVIILKKNRPGR---DVLFIDASNNFTKFKN----QNKLEPEHIKRIVDTYK 441 Query: 458 SRENGKFSRML 468 +RE+ + L Sbjct: 442 NRESIEKYSYL 452 >gi|238923269|ref|YP_002936784.1| type I restriction-modification system methylation subunit [Eubacterium rectale ATCC 33656] gi|238874943|gb|ACR74650.1| type I restriction-modification system methylation subunit [Eubacterium rectale ATCC 33656] Length = 533 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 109/500 (21%), Positives = 195/500 (39%), Gaps = 69/500 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52 M E ++ L + +W A+ L ++ +L + L + + Sbjct: 1 MAE-QENSKDLISVLWSGADVLRSKMDANEYKNYLLGIVFYKYLSDSFLIRVYDLINDEK 59 Query: 53 SA----VREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIA 105 E Y + ++ Y Y+ + N N E Sbjct: 60 PESLKVALEAYKNELKGEYANDLLDELKQDRKYVIEPELTYTCFAEDARNNCFNREQLQK 119 Query: 106 SFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +F++ + +F D D S+ +++ + ++ K +L ++ Sbjct: 120 AFNNIEQSGELFVDLFSDIDLYSSRLGAGDQKQSDTIAELIKVIDQADLLNSDGE--ILG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F SE + A +F TP+ V + T + + + + ++YDP G+ Sbjct: 178 DAYEYLIGQFASETGKKAGEFYTPQAVSKILTRIAITGQENV------KGLSIYDPCMGS 231 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L +A + ++ K +GQEL T+ + M + + ++ ++N+ Sbjct: 232 GSLLLNAKRYYKGDTNYIK------YYGQELNMSTYNLARMNMFLHDVAAE-----NQNL 280 Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 G TL D TG+ FH L NPP+ KW ++ E RF L S Sbjct: 281 HHGDTLDADWPTGEETDFHMVLMNPPYSAKWSAASGFLQDE-------RFSEYGVLAPKS 333 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E +IR LL + I A++ Sbjct: 334 KADYAFLLHGLYHLKS----NGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIG 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LF+ T+I T + +L + V I+A+ + GKK+ ++D+ ++ Sbjct: 387 LPANLFYNTSIPTCIVVLKKHRDGR---DVLFIDASKKFIK----GKKQNEMSDEHIDEV 439 Query: 453 LDIYVSRENGKFSRMLDYRT 472 +D+Y RE L Sbjct: 440 MDLYNRRETVDKESYLASFD 459 >gi|89073170|ref|ZP_01159709.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34] gi|89051123|gb|EAR56580.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34] Length = 529 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 97/497 (19%), Positives = 181/497 (36%), Gaps = 74/497 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EKY 59 L +W+ A L G + DF IL + L L + + Sbjct: 6 QKELNLQLWQIATHLRGQMQGDDFRNYILGLLFYKYLSDKLIRYADELLLDDGIRFAQID 65 Query: 60 LAFGGSNIDLESFVKVAGYS---FYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNA 111 LE+ + A F+ SE L +++ + + Sbjct: 66 EKSEDGQEYLEAIKEEARNVLGYFFKPSEL-FHVLAEAGANGKFILDDVRDVLNDIEQST 124 Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 DF L+ + L+ K+ ++ I+ H + ++ + Y Sbjct: 125 MGADSADDFDGLFDELDLTSNKLGKTPDARNKLIAKVLEHLDNIDFHLENSEIDILGDAY 184 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F S + A +F TP+ + L L+ ++ I ++YDPTCG+G Sbjct: 185 EYLIGMFASGAGKKAGEFYTPQILSKLLAKLVTLGNED--------IESVYDPTCGSGSL 236 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + +GQE P T+ + M++ L+ D +I+ Sbjct: 237 LLQAARESRNLDVK--------CYGQEQNPNTYNLARMNMIMHGLDYDG-----FDIKNA 283 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSML 337 TL RF ++NPPF W + RF L + Sbjct: 284 DTLHAPQHLNLRFDAIVANPPFSMHWSPTPLYMS-------DPRFAESGKLAPKTKADYA 336 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD 396 F+ H+ +L + G A+V+ LF A E IR++L+ + + ++ ++ LP++ Sbjct: 337 FIQHMLYQL----SDTGTMAVVVPHGVLFRSLA---EGHIRKFLIKDKNYLDMVIGLPSN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + T + + + +K+ + V I+A+ + GK + ++ ++IL+ Sbjct: 390 IVLGTGVPVCILVF--KKSRKVDDNVLFIDASQHFEK----GKNANYLREEDLQRILNAV 443 Query: 457 VSREN-GKFSRMLDYRT 472 REN +FS + Sbjct: 444 SKRENIDQFSHLASISD 460 >gi|308062171|gb|ADO04059.1| type I restriction-modification system, M subunit [Helicobacter pylori Cuz20] Length = 529 Score = 284 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 125/580 (21%), Positives = 213/580 (36%), Gaps = 86/580 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48 M A L N IWK A +L G DF + +L R + + Sbjct: 1 MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60 Query: 49 --EPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 E + E+ + I+ + F F N + + T Sbjct: 61 NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI + G++L Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ KW D + + K RF P Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPILINDK-----RFSPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + + F MH+ + L + G AIV L+ G A E++IR L++ + Sbjct: 337 GVLAPKNAADLAFTMHMLSYL----SNTGTCAIVEFPGVLYRGNA---EAKIREHLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 +I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 VIDCVIALPDNLFFGTSIATCILVLKKNKPDDTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R +IL Y R+ K L + + + L E Sbjct: 443 EHNREKILQTYTERKTIKHFSALAN---------MEKIKENDYNLSVNRFVEQEDTKEII 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q E +KE + A Sbjct: 494 DIKALN----GEISQIVEKQSALRNSLELIIKELEEGQNA 529 >gi|90411353|ref|ZP_01219365.1| hsdM; site-specific DNA-methyltransferase, type I modification [Photobacterium profundum 3TCK] gi|90327882|gb|EAS44213.1| hsdM; site-specific DNA-methyltransferase, type I modification [Photobacterium profundum 3TCK] Length = 567 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 98/601 (16%), Positives = 197/601 (32%), Gaps = 100/601 (16%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57 M + L +W A+ L + +L ++ + A + + ++ Sbjct: 1 MNQTEQQFLKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADL 60 Query: 58 ---KYLAFGGS-------------NIDLESFVKVAGYSFYNTSEYSLSTLGST------- 94 ++ + + F+ E L Sbjct: 61 ANPEHEYYLDPVDFSEEELLEEIKIELEQRDFYTEKNVFWLPIESRWQFLQDNGPLVIGG 120 Query: 95 ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 + +N I + K + S I + L ++ Sbjct: 121 AELDVDGKTKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSSLKIDQ----AKLNELIN 176 Query: 139 NFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + I H D ++ ++YE+++ +F + F TP +V L ++ Sbjct: 177 LIATIPFVHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVTLIVEMI------ 230 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252 +YDP G+GGF + + + ++ + +GQE T Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERHANEKQVDAITQKQKISIYGQEYNHTTW 285 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M IR L+ D ++ + ST + R + ++NPPF K Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT---- 335 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + RF G P + + ++ H+ + L G +A ++ + S Sbjct: 336 ---GVDDNDPRFKYGQPPAGNANFAWMQHMLHHLAP---EGSQALLLANGSMSSTTNN-- 387 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGKV 422 E IR+ L+ENDLIE +VALP LF T I +W L+ K R+G+V Sbjct: 388 -EGTIRQALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKKPRVDKAGRKLRGRKGEV 446 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480 I+A +L R + D +++ D++ + + G+ + Y G+ + + Sbjct: 447 LFIDARNLGYMKDRV---LRDFSFDDVKRVADLFHAWKTGEEIHGVAYEDQAGFCKSATL 503 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 + F+L + + + +Q E+ +K+++ Sbjct: 504 EEITKHDFVLTPGRYVGAAEE---EDDGVPFGEKMATLTAKLSEQFVESATLEADIKKNL 560 Query: 541 K 541 Sbjct: 561 L 561 >gi|325678458|ref|ZP_08158075.1| N-6 DNA Methylase [Ruminococcus albus 8] gi|324109846|gb|EGC04045.1| N-6 DNA Methylase [Ruminococcus albus 8] Length = 290 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 165/306 (53%), Gaps = 23/306 (7%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 FS N + I + DF I +++K L + K FS ++L P T+ + M I+E LIR+F Sbjct: 1 FSANVQDIIKSLDFDKQIDKMDKNNRLLSVVKAFSELDLDPKTIDNVKMGYIFEELIRKF 60 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + A D T RD++ L +LL + I T+ D GTGG L+ + N Sbjct: 61 SE--NAEAGDHYTGRDIIKLMVNILLAEGCDDIFDDHKEI-TILDQAAGTGGMLSTSYNF 117 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + GQE+ PE++A+CVA MLI+ ++NI+ T+ D Sbjct: 118 IHRYNPTANV----RLFGQEINPESYAMCVAEMLIKGQN-------AENIRMQDTMKADC 166 Query: 287 FTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 F ++ + + NPPFG W E + AV++E++ G GRFG GLP D +LF+ Sbjct: 167 FPDRQMRFVIENPPFGTPWGGKDAAEGVEQAVKEENQKGFDGRFGAGLPGSGDMQLLFIQ 226 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 NK+ N GRAAI+ + SPLF+G SGES+IRRWLLENDLIEAI+ALP DLF+ Sbjct: 227 SAVNKM---DNALGRAAIIENGSPLFSGGTSSGESQIRRWLLENDLIEAIIALPVDLFYN 283 Query: 401 TNIATY 406 T I Sbjct: 284 TGILCC 289 >gi|326334517|ref|ZP_08200728.1| type I restriction-modification system DNA-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693286|gb|EGD35214.1| type I restriction-modification system DNA-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 515 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 120/484 (24%), Positives = 192/484 (39%), Gaps = 70/484 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61 L IWK A ++ G DF + +L R + E +V +Y Sbjct: 5 KQREELQAAIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTNFIEGGDESV--QYAE 62 Query: 62 FGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD-------- 109 I E K GY Y S+ ++ + NT +NL + +A+ FS Sbjct: 63 LPDEAITPEIKDDATKTKGYFIY-PSQLFVNVAKNANTNSNLNTDLAAIFSAIESSANGY 121 Query: 110 ----NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + K +F DF +T RL EK L + +G+ + + + Y Sbjct: 122 PSEADIKGLFA--DFDTTSNRLGNTVEEKNKRLAAVVNGVAGLSFGDFENHQIDLFGDAY 179 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LI + + + +F TP++V L L L ++ K +YDP CG+G Sbjct: 180 EFLISNYAANAGKSGGEFFTPQNVSKLIAQLALLGQSSVNK--------IYDPACGSGSL 231 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A H D GQE+ T+ + M + + D NI G Sbjct: 232 LLQAKKHFDDYQIEEG------FFGQEINHTTYNLVRMNMFLHNINYDKF-----NIALG 280 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL F ++ F +SNPP+ W D RF P L S Sbjct: 281 DTLINPCFGDEKPFDAIVSNPPYSVNWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H + L + GRAAIV + G A E +IR++L++N+ +E ++ALP + Sbjct: 336 AFVLHSLSYL----SAKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNYVETVIALPPN 388 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T+IA + +LS K + + Q I+A+ + ++ DD I+ I+ Sbjct: 389 LFYGTSIAVNILVLSKHKPDTQT---QFIDASG--EDFFKKETNNNVLTDDHIAHIVSIF 443 Query: 457 VSRE 460 +E Sbjct: 444 ADKE 447 >gi|218767944|ref|YP_002342456.1| putative type I restriction-modification system protein [Neisseria meningitidis Z2491] gi|121051952|emb|CAM08258.1| putative type I restriction-modification system protein [Neisseria meningitidis Z2491] Length = 514 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|309379401|emb|CBX21968.1| putative DNA adenine methyltransferase subunit of Type I restriction/modification system [Neisseria lactamica Y92-1009] Length = 513 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 107/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ R F +SNPP+ W D RF P L S Sbjct: 279 LGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 439 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 440 LFADKADVPH 449 >gi|110597490|ref|ZP_01385777.1| type I restriction-modification system, M subunit [Chlorobium ferrooxidans DSM 13031] gi|110341034|gb|EAT59505.1| type I restriction-modification system, M subunit [Chlorobium ferrooxidans DSM 13031] Length = 815 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 98/484 (20%), Positives = 190/484 (39%), Gaps = 73/484 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W++ ++L G + + +L ++ + Sbjct: 15 MALKKSELYSSLWQSCDELRGGMDASQYKDYVLVLLFVKYVSD----------------K 58 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + G SF + L T+ + + I +A + + DF+ Sbjct: 59 YAGVRFAEITVPPGASFS-----DMVALKGKTDIGDQINKKILGPLASANKLSDMPDFND 113 Query: 123 TIAR---LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAED 176 +K L + F L D ++ + YE+L+R F +E + Sbjct: 114 DTKLGSGKDKVDTLTNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKGQ 173 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V + ++ + + T+YDPTCG+G L + + Sbjct: 174 FYTPAEVSRIMAKIIGIHNAPTTSNT-----TVYDPTCGSGSLLLKVGD---------EA 219 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------K 290 + +GQE + T + M++ + + I+QG+TL+ LF K Sbjct: 220 AARVTLYGQEKDAATSGLARMNMILHN-------NPTAEIKQGNTLANPLFFDADSGDLK 272 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELP 349 F Y ++NPPF + ++ + GRF G+P G +L+H+ L+ Sbjct: 273 TFDYVVANPPFSD--KSWSKGIDP--FDDPFGRFRHFGVPPAKQGDYAYLLHIIRSLKST 328 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+ A +L LF G A E++IR L+ I+ ++ LP +LF+ T I + + Sbjct: 329 ----GKGACILPHGVLFRGNA---EADIRSKLVIMKYIKGVIGLPANLFYGTGIPACIIV 381 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468 + + R+G + +I+A+ + +G K R + D +I+D++ K+SRM+ Sbjct: 382 IDKKDAHTRKG-IFMIDASAGFM---KDGPKNR-LRDMDLHRIVDVFSRELEIPKYSRMV 436 Query: 469 DYRT 472 Sbjct: 437 GIEE 440 >gi|317009142|gb|ADU79722.1| type I restriction-modification system, M subunit [Helicobacter pylori India7] Length = 530 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 125/582 (21%), Positives = 215/582 (36%), Gaps = 89/582 (15%) Query: 1 MTEFTGSA---------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--- 48 M + L N IWK A +L G DF + +L R + + Sbjct: 1 MENTQNTQANESSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHY 60 Query: 49 --EPTRSA---------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 + R E+ + I+ + F F N + + T Sbjct: 61 INKEERERDPSFDYANLSDEEAESTRKGFIEEKGFFIPPSALFCNALKNAPDNEDLNVTL 120 Query: 98 NNLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148 N+ + I S +N K +F D D +S + + L KI + G++L Sbjct: 121 QNIFTEIEKSSLGTPSEENVKGLFADLDVNSNKLGSSHKTRVEKLTKILQAIGGMQLGDY 180 Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 LKSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK------- 233 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 234 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-- 284 Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +I G TL + F +SNPP+ KW D + RF P Sbjct: 285 ---YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSSPI-----LITDERFSP 336 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + + F MH+ + L G AAIV L+ G A E++IR +L++ Sbjct: 337 AGVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKE 389 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 NFIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKL 442 Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 + R +IL Y+ R+ K F + D + + + L E Sbjct: 443 KEHNREKILKTYIERKEVKHFCALAD----------IEQIKENDYNLSVNRYVEQEDTKE 492 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q +S +KE + A Sbjct: 493 VIDIKALN----SEIPQIVEKQSALRNSLDSIIKELEEGQNA 530 >gi|291044252|ref|ZP_06569961.1| type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae DGI2] gi|291011146|gb|EFE03142.1| type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae DGI2] gi|317163870|gb|ADV07411.1| putative type I restriction-modification system methyltransferase protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 514 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N +E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + + I F DF +T +RL +K L + K + ++ + + + Y Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + + +I+ G Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ W D RF P L S Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL + Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ ++ Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 442 Query: 457 VSRENGKF 464 + + Sbjct: 443 ADKADVPH 450 >gi|240016160|ref|ZP_04722700.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae FA6140] gi|260440928|ref|ZP_05794744.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae DGI2] Length = 513 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 --DNAKAIFEDFD-FSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + + I FD F +T +RL +K L + K + ++ + + + Y Sbjct: 120 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 179 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 180 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 231 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + + +I+ G Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELG 280 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ W D RF P L S Sbjct: 281 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL + Sbjct: 336 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 388 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ ++ Sbjct: 389 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 441 Query: 457 VSRENGKF 464 + + Sbjct: 442 ADKADVPH 449 >gi|187476895|ref|YP_784919.1| restriction-modification system, modification (methylase) subunit [Bordetella avium 197N] gi|115421481|emb|CAJ47989.1| restriction-modification system, modification (methylase) subunit [Bordetella avium 197N] Length = 924 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 100/498 (20%), Positives = 186/498 (37%), Gaps = 68/498 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--PTRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L + ++ + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDRLVAFASAEDFTDEDFSAVT 61 Query: 65 SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117 + ++ ++ + S T ++ +++FS N K +FE Sbjct: 62 EEDTETVEHFKSNLGYFIAHKHLFSTWLDQTSDFTVGDVREALSAFSRLIHPNHKRLFEG 121 Query: 118 F--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L + + + I + V+ IYE+LI F + Sbjct: 122 IFKTLETGLSKLGDTAAKQTKAIGDLLQLIKDIPMDGKQGY-DVLGFIYEYLIGMFAASA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YD T G+G L + +A Sbjct: 181 GKKAGEFYTPHEVSVLMSEVIAHHLKDR------ETIQIYDSTSGSGSLLLNIGQAIAKH 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286 + + QEL+ T+ + +++R + L NI + TL D Sbjct: 235 MGD---KDSIKYYAQELKENTYNLTRMNLVMRGI-------LPGNIVTRNADTLEDDWPY 284 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + +SNPP+ +KW+ + RF GL S Sbjct: 285 FDEQDPVNSYNPLYLDAVVSNPPYSQKWDPLHKDADPR-----YARF--GLAPKSKADYA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G E IR+ L+END +E I+ LP+++ Sbjct: 338 FLLHDLYHLKP----NGIMAIVLPHGVLFRGGE---EGVIRKQLIENDHLETIIGLPSNI 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + +L ++ V ++A+ + K + ++I D+ + Sbjct: 391 FFGTGIPTVILVLRQKRESS---DVLFVDASKGFAKE----GKNNKLRACDIKKITDVVI 443 Query: 458 SRENGK-FSRMLDYRTFG 474 +R FSR++ Sbjct: 444 ARATVPGFSRLVPKTELQ 461 >gi|319901495|ref|YP_004161223.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108] gi|319416526|gb|ADV43637.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108] Length = 783 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 101/479 (21%), Positives = 189/479 (39%), Gaps = 72/479 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + + +W + + L G + + +L ++ L Sbjct: 1 MAIKKSQIYSTLWNSCDALRGSMDASQYKDYVLMILFIKYLSD----------------- 43 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDF 118 + + F G F S++ L G + + + + + + +F Sbjct: 44 KESDEDSIFTIPDGCRF---SDFVLLK-GDDHIGEQINKKLEAIKEANAMFLNRLALPNF 99 Query: 119 DFSSTIARLEK-AGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174 + S + + ++ L + F +L D ++ + YE+L++ F +E + Sbjct: 100 NDPSKLGKPKEMRETLSNLIAAFESEDLDFSKNRTADDDILGDAYEYLMKNFAAESGKSK 159 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V + +L E T+YDPTCG+G L A+ Sbjct: 160 GQFYTPAEVSRVMAKML------HLTEFTSPSTTIYDPTCGSGSLLLRAI---------G 204 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290 + P P+GQE + T ++ + ML+ ++ + I+QG T++ FT K Sbjct: 205 ETPNGATPYGQEKDNSTASLAILNMLLHGVD-------TATIEQGDTINSPEFTEGGQLK 257 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELP 349 F C++NPPF K + R+ L P G FL+HL ++ Sbjct: 258 TFDVCVANPPFSTKSWLGAAGKDDAV----YHRWTAELCPPDKCGDYAFLLHLIASMKP- 312 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G GR A +L LF G A E EIR+ ++ IE IV LP ++FF T I + + Sbjct: 313 --GTGRGACILPHGVLFRGNA---EYEIRKHIIRQGWIEGIVGLPANIFFGTGIPASIIL 367 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 ++ + R+G + ++A D + +G K R + + ++I+D + +R + Sbjct: 368 INKQGAANRKG-IFFVDAKDGFV---KDGNKNR-LREQDIKRIVDTWNARHDVPNYAKF 421 >gi|297380050|gb|ADI34937.1| type I restriction-modification system, M subunit [Helicobacter pylori v225d] Length = 527 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 124/567 (21%), Positives = 214/567 (37%), Gaps = 80/567 (14%) Query: 2 TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48 S L N IWK A +L G DF + +L R + + Sbjct: 6 NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERER 65 Query: 49 EPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105 +P+ E+ + I+ + F F N + + + T N+ + I Sbjct: 66 DPSFDYALLSDEEAESAKKDLIEEKGFFIPPSALFCNVLKNAPTNEDLNVTLQNIFNEIE 125 Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155 S +N K +F D D +S + + L KI + G++L V Sbjct: 126 KSSLGFESEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQKSGIDVF 185 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+L+ + S + +F TP++V L + L +++ K +YDP CG Sbjct: 186 GDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCG 237 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + D GQE+ T+ +C M + + + Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286 Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL + F +SNPP+ KW D + + RF P L + Sbjct: 287 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGDSNPI-----LINDERFSPAGVLAPKN 341 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F MH+ + L G AAIV L+ G A ES+IR +L++N+ I+ ++A Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---ESKIREYLVKNNFIDCVIA 394 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF T+IAT + +L K ++ I+A++ + K+ + + + +I Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASEEFVKE----GKKNKLKEHNKEKI 447 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 L Y R+ K L + + + L E + L+ Sbjct: 448 LQTYTERKAIKHFSALAN---------IEKIKENDYNLSVNRYVEQEDTKEIIDIKALN- 497 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539 +I + + +Q E+ +KE Sbjct: 498 ---GEISQIVEKQSVLRNSLENIIKEL 521 >gi|194098143|ref|YP_002001191.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae NCCP11945] gi|193933433|gb|ACF29257.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae NCCP11945] Length = 514 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N +E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + + I F DF +T +RL +K L + K + ++ + + + Y Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + + +I+ G Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ W D RF P L S Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL + Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ ++ Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 442 Query: 457 VSRENGKF 464 + + Sbjct: 443 ADKADVPH 450 >gi|325202378|gb|ADY97832.1| type I restriction-modification system, M subunit [Neisseria meningitidis M01-240149] Length = 513 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 187/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + F N + E + +T + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A+ + N ++ ++ I+ Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIADIVK 439 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 440 LFADKADVPH 449 >gi|257051192|ref|YP_003129025.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940] gi|256689955|gb|ACV10292.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940] Length = 493 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 130/533 (24%), Positives = 210/533 (39%), Gaps = 56/533 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + L + ++K A+ + T++ ILP + + E R E+Y G Sbjct: 1 MSLTLDELDSHLFKCADIIRDAVDSTEYKDFILPLVYYKTISDNFEVQREKYVEEY---G 57 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-----IFEDF 118 + + + V Y Y L N++ I D + + F Sbjct: 58 DEHANRPNIYDVP----YVPDGYLWDDL--RAVNENVDEAINDAFDALREANDGEVEGVF 111 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 L ++ ++ S I+L D+VP ++ Y L+R F E + F Sbjct: 112 RADYVAEDALTDDRLTRLIEHLSTIDLDNDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFF 171 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L LL +D T +DPT G+GG L +A H D P Sbjct: 172 TPPHIVELMVRLLAPFED---------GDTFHDPTVGSGGMLVEAATHYRDEQG--GDPS 220 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294 L GQE+ P+ A+ + I L S I++ +L + F +F Y Sbjct: 221 KLTFTGQEINPDIAAIAKMNLSIHGL--------SGRIEREDSLLRPQFTENGELTKFDY 272 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNG 352 L+N PF W+KD E ++ GRF LP+ G F+MH+A +L N Sbjct: 273 VLANFPFSADWQKD------ELQDDTYGRFDWHEKLPRADRGDYAFIMHMAEQL----NE 322 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+AAIV+ LF ES R +LENDL+EAIV LP +LF +I + + +L+ Sbjct: 323 TGQAAIVIPHGVLFR----KHESRYREPMLENDLVEAIVGLPENLFQNNSIPSAILLLNT 378 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYR 471 K ER G+VQ I+A D + E + + D+ +++ + + SR + Sbjct: 379 DKPAEREGEVQFIHAAD--EAFYRELSNQNELTDEGVAHVVENFRDWTTEERVSRTVSIE 436 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + L + + + E T R+L + + M Sbjct: 437 EIRENDYNLNIALYVDTTEPEEEIDVAEELATLRELQAERDEIEARMDQHMEA 489 >gi|194335867|ref|YP_002017661.1| type I restriction-modification system, M subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194308344|gb|ACF43044.1| type I restriction-modification system, M subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 544 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 111/515 (21%), Positives = 188/515 (36%), Gaps = 82/515 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58 MTE + + +W A+ L G DF +L F LR L E Sbjct: 1 MTE--QNQKQMGTTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGTDF 58 Query: 59 ---------------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-- 101 Y G + + E +++ + + +Y ++ + E Sbjct: 59 PDSREQPGTTPLQLWYNNNPGDSAEFEKQMRLKVH-YVIQPQYLWGSIAEMARTQDGELL 117 Query: 102 -------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147 YI SF+ + +F + + SS +L ++ L I + L Sbjct: 118 HTLQKAFDYIENESFASTFQGLFSEINLSS--EKLGKHYTDRNAKLCTIITKIAE-GLAG 174 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + + YE+LI +F + + A +F TP+ + + +A++ + Sbjct: 175 FSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISSILSAIVTLDSQEPSSGKKKYLI 234 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 ++ D CG+G L + + G +GQE T+ + ML+ ++ Sbjct: 235 SVLDFACGSGSLLLNVRKKMGQYGIGK-------IYGQESNITTYNLARMNMLLHGVK-- 285 Query: 268 PRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 D I G TL D K F ++NPPF +WE G Sbjct: 286 ---DSEFEIFHGDTLLNDWEMLREANPAKKKHFDAVVANPPFSYRWELTDA-------LG 335 Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + RF GL S FL+H L G AI+L LF G E IR Sbjct: 336 DDVRFKNYGLAPKSAADFAFLLHGFQYLAKE----GTMAIILPHGVLFRGGV---EERIR 388 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 LL++ I+ ++ LP +LFF T I + +L K V INA++ + G Sbjct: 389 TKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINASEHFEK----G 441 Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 K++ + D +I++ Y R + +SR + Sbjct: 442 KRQNRLRQDDIDKIVETYQFRTEEERYSRRVSMDE 476 >gi|254804703|ref|YP_003082924.1| putative type I restriction-modification system DNA methylase [Neisseria meningitidis alpha14] gi|254668245|emb|CBA05075.1| putative type I restriction-modification system DNA methylase [Neisseria meningitidis alpha14] Length = 514 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ R F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDGRPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYLSSR----GRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A+ + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASSFFKKETN----NNVLTEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|315506715|ref|YP_004085602.1| type i restriction-modification system, m subunit [Micromonospora sp. L5] gi|315413334|gb|ADU11451.1| type I restriction-modification system, M subunit [Micromonospora sp. L5] Length = 522 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 118/505 (23%), Positives = 193/505 (38%), Gaps = 73/505 (14%) Query: 1 MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRS 53 M T A L IW+ A DL G DF +L R + L E R Sbjct: 1 MAPTTKEAQRAELHKTIWRIANDLRGSVDGWDFKTYVLGILFYRFISENLTAYVNEGERR 60 Query: 54 AVREKYLAFGGSNIDLESFVKV--AGYSFYN-TSEYSLSTLGSTNTRNNLESYIA----- 105 A + ++ E K A FY SE ++ + +L + Sbjct: 61 AGEADFDYTKLTDKQAEVGRKATVAEKGFYILPSELFVNVRKRAASDPDLNETLERVFRN 120 Query: 106 --------SFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVP 151 D+ K +F+D D +T+AR + L K+ ++L + Sbjct: 121 IEGSAVGTDSEDDLKGLFDDLDVNSGKLGNTVAR--RNEKLVKLLNAVGDLKLGDFNNHA 178 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE+L+ + S + +F TP++V L + + ++ K +YD Sbjct: 179 IDAFGDAYEYLMTMYASSAGKSGGEFFTPQEVSELLARITVVGKKSVNK--------VYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L + GQE+ T+ + M + + Sbjct: 231 PACGSGSLLLQFAKVLGQKNVRQG------FFGQEINLTTYNLARINMFLHDI-----GY 279 Query: 272 LSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 NI G TL + F +SNPP+ KW D + + RF P L Sbjct: 280 EQFNIAHGDTLLDPAHWDEEPFEAIVSNPPYSTKWPGDSNPL-----LINDPRFSPAGVL 334 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F MH+ L G AAIV L+ G A E +IR++L++N+ ++ Sbjct: 335 APKSKADLAFTMHMLRWL----AVNGTAAIVEFPGVLYRGGA---EQKIRKYLVDNNYVD 387 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 ++ LP DLFF IAT + +L K + V I+A+ + + G K + + Sbjct: 388 TVIQLPPDLFFGVTIATCIIVLKKSKND---NNVLFIDASAEF---KRVGNK-NKLLPEH 440 Query: 449 RRQILDIYVSRENGK-FSRMLDYRT 472 R+ ILD +V+R + F+R++ Sbjct: 441 RKMILDAFVARRSVDHFARLVPNTD 465 >gi|187779296|ref|ZP_02995769.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC 15579] gi|187772921|gb|EDU36723.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC 15579] Length = 529 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 99/501 (19%), Positives = 190/501 (37%), Gaps = 80/501 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----------TR 52 + S+ N +W A +L G +++ IL F R L E Sbjct: 1 MNNNIKSITNKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEEYLLKNNVIDVIEG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIAS 106 ++ E Y + + + ++ Y + + +L S ++ ++ + Sbjct: 61 ESINESYNSQVDESELEDYLQDISASLGYAIAPKDTWQSLIDKINDSQVIPSDYQTIFDN 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ NA + +F D + + + E+A L I K IE + D Sbjct: 121 FNKNAELNKEAVKDFRGVFNDINLGDSRLGSSTNERAKSLNNIVKLVDSIEYKGNDGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + + + +YDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTEAVE-----KSDELFNVYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L + + GQEL T+ + +++ + + + Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHGISYNNMVLSN 287 Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D G + F ++NPP+ KW+ D+ + + RF Sbjct: 288 A-----DTLESDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRF 335 Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L S F++H L G AIVL LF G A E +IR L+ Sbjct: 336 SEYGKLAPASKADYAFILHSIYHLNKT----GTMAIVLPHGVLFRGAA---EGKIRETLI 388 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + ++ I+ LP +LF+ T+I T + +L + + + I+A++ + +N + Sbjct: 389 GKNYLDTIIGLPANLFYGTSIPTVILVLKKNRENK---DILFIDASNDFEKNKN----QN 441 Query: 443 IINDDQRRQILDIYVSRENGK 463 + D+ +I+ Y R++ + Sbjct: 442 NLRDEDIDKIIKTYKERKDVE 462 >gi|237743940|ref|ZP_04574421.1| type I restriction-modification system DNA methylase [Fusobacterium sp. 7_1] gi|229432971|gb|EEO43183.1| type I restriction-modification system DNA methylase [Fusobacterium sp. 7_1] Length = 520 Score = 283 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 117/547 (21%), Positives = 204/547 (37%), Gaps = 77/547 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52 ++ A L IW A DL G DF + +L R + L E Sbjct: 3 SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGN 62 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA- 111 S L+ + + E ++ G+ F SE ++ + NL + + N Sbjct: 63 SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFINVRKKADKDENLNVTLDTIFKNIE 121 Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 K +F+D D +S +L ++ L + ++L Sbjct: 122 NSANGTESESDLKGLFDDIDVNS--NKLGGTVVKRNENLVNLINGVGDMKLGDYQENTID 179 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + ++ TP++V L T L L + K +YDP Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPA 231 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 232 CGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF---- 281 Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 282 -DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLAP 335 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ I Sbjct: 336 KSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCI 388 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LF+ T+IAT + +L K K+ I+ + + + N + + Sbjct: 389 IQLPDNLFYGTSIATCIMVLKKSK---IDNKILFIDGSKEFVKVTNS----NKMTEKHID 441 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I++ + REN ++ L Y +I V +S E + + Sbjct: 442 DIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKIDIFELNKEI 496 Query: 511 HQSFWLD 517 + + Sbjct: 497 QRIVARE 503 >gi|209554541|ref|YP_002284449.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209542042|gb|ACI60271.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 510 Score = 283 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 108/560 (19%), Positives = 219/560 (39%), Gaps = 64/560 (11%) Query: 1 MTEFTGSA---ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRS 53 M + +AN +W + ++L G+ + +I+ L+ + A+ + Sbjct: 1 MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKD 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAG-----YSFYN-TSEYSLSTLGSTNTRNNLESYIASF 107 ++K+ ++ DL S G + +N S ++ + I + Sbjct: 61 KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + K +F S + + L + + F+ + + ++ IYE+ + F Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDF--SQFNEDLVGRIYEYFLGEFF 173 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + +F TP+ VV L +L P +YDP CGTGG A N++ Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + + +GQE + +T + +L+ + + T +DL Sbjct: 224 HEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGS---EDTFKEDLH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 G++F ++NPPF K ++ + E RF G+P ++ + +L+H+ +KL Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKLN 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+A ++L++ L + ES +R+ ++E ++++AI++LP LF+ T I+ + Sbjct: 331 SR----GKAGVILANGSLSSSNKE--ESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 W + K E V I A+ + K R + D +I ++Y E G+ Sbjct: 385 WFFNKNKENE---NVLFIEASKMGELKTK---KLRFLTKDNISKIKNVYDKHEQGE---- 434 Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 D G+ + + + + L E ++ + + L + ++ Sbjct: 435 -DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIKGLQEELSVLFDEL 493 Query: 527 YPYGWAESFVKESIKSNEAK 546 KESIK K Sbjct: 494 EDLIPQ---AKESIKKVLEK 510 >gi|284052297|ref|ZP_06382507.1| Type I site-specific deoxyribonuclease HsdM [Arthrospira platensis str. Paraca] gi|78773875|gb|ABB51224.1| type I RM system M subunit [Arthrospira platensis] gi|291569503|dbj|BAI91775.1| type I site-specific methyltransferase [Arthrospira platensis NIES-39] Length = 513 Score = 283 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 119/490 (24%), Positives = 193/490 (39%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 MT T A+L IW+ A D+ G DF + +L R + + Sbjct: 1 MT-STQQRAALQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTSYAEGDDDGID 59 Query: 59 YLAFGGSNIDLE---SFVKVAGYSFY--------NTSEYSLSTLGST--NTRNNLESYIA 105 Y S+I + +K GY Y S + +L + +ES Sbjct: 60 YAKLSDSDIPDDFKDDAIKTKGYFIYPSQLFATIAASANTNESLNTDLAAIFAAIESSAN 119 Query: 106 SF--SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + + K +F DF +T RL +K L + K +G++ + + Sbjct: 120 GYPSEPDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGLAGLDFGGFDASHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP CG+G Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQQVSRLIAQLAMHQQTSVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H D +GQE+ + + M + + + NIQ Sbjct: 230 SLLLQAKKHFDDHRIEEG------FYGQEINHTNYNLARMNMFLHNINYNKF-----NIQ 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL+ F ++ F +SNPP+ KW RF P L S Sbjct: 279 LGNTLTDPHFGDEKPFDAIVSNPPYSVKWVGSDHPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G A E++IR++L++N+ +E ++AL Sbjct: 334 DFAFVLHCLSYLSSS----GRAAIVCFPGIFYRGGA---EAKIRKYLVDNNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T IA + +LS K + Q I A+ L+ N + DD +I+ Sbjct: 387 PNLFFGTTIAVTVLVLSKDKPDSTT---QFIYASGLFKKETN----NNTLTDDHIAEIMG 439 Query: 455 IYVSRENGKF 464 ++ S+EN Sbjct: 440 VFDSKENVDH 449 >gi|317180611|dbj|BAJ58397.1| Type I restriction enzyme M protein [Helicobacter pylori F32] Length = 527 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 123/573 (21%), Positives = 212/573 (36%), Gaps = 80/573 (13%) Query: 2 TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRS 53 S L N IWK A +L G DF + +L R + + E + Sbjct: 6 NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERKR 65 Query: 54 AVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105 E+ I+ + F F N + + + T N+ + I Sbjct: 66 DPSFDYALLSDEEAEGAKEGLIEEKGFFIPPSALFCNVLKNAPNNDDLNVTLQNIFNEIE 125 Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155 S +N K +F D D +S + + L KI + G++L V Sbjct: 126 KSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYLKSGIDVF 185 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+L+ + S + +F TP++V L + L +++ K +YDP CG Sbjct: 186 GDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCG 237 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + D GQE+ T+ +C M + + + Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286 Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL + F +SNPP+ KW D + + RF P L + Sbjct: 287 IVHGDTLLDPKHKDDEPFDAIVSNPPYSTKWAGDNNPI-----LINDERFSPAGVLAPKN 341 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F MH+ + L G AAIV L+ G A E++IR +L++ + I+ ++A Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGHA---EAKIREYLVKENFIDCVIA 394 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF T+IAT + +L K ++ I+A+ + K+ + + R +I Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLKEHNREKI 447 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 L Y+ R+ K L + + + L E + L+ Sbjct: 448 LQTYIERKEVKHFCALAS---------MEQIKENDYNLSVNRFVEQEDTKEIIDIKALN- 497 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 +I + + +Q + +KE + A Sbjct: 498 ---SEISQIVEKQSALRNSLDCIIKELEEGQNA 527 >gi|326561037|gb|EGE11402.1| putative type I restriction enzyme HindVIIP M protein [Moraxella catarrhalis 7169] gi|326564412|gb|EGE14640.1| putative type I restriction enzyme HindVIIP M protein [Moraxella catarrhalis 12P80B1] Length = 545 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 99/580 (17%), Positives = 193/580 (33%), Gaps = 96/580 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---------- 57 L +WK A+ L + ++ ++L F L+ + + ++ Sbjct: 12 LNKLDQDLWKAADTLRKNLDAANYKHIVLGFIFLKYISDTFTDFQGKLKANIANPESDIY 71 Query: 58 ---------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------------- 95 ++ + ++ + A F+ ++ + + Sbjct: 72 LDPSLFEPSEFEQILSAELEERDYY-TAENIFWVPTQARWENIKDNSKLNAGDELPWGGK 130 Query: 96 ------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 ++ I + K + + + L + FS + Sbjct: 131 FKNVSILLDDAFEAIEQENPKLKGVLQRIAGFGVPDEM-----LRGLTDLFSRTDFTRPM 185 Query: 150 VP--------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 186 YNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML---------- 235 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YDP G+GGF + + + +GQE P T + V M I Sbjct: 236 -EPYSGRVYDPAMGSGGFFVQTDRFIQAHQGNRNA---ISVYGQESNPTTRKLAVMNMAI 291 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 R + D + TL L K+ + ++NPPF E G Sbjct: 292 RGIPFDFGD------KPEDTLLNPLHIDKKMDFVMANPPFNM------KEWWSESLAG-D 338 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 R+ G P + + +L H+ L G+ A++L++ + SGE EIR+ + Sbjct: 339 PRWAYGTPPQGNANFAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGEIRKNI 392 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + DL+EA++ALP LF T I +WI++ K +G+V INAT + Sbjct: 393 ITADLVEAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYMKDRV---L 447 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 R D +I D Y + + + F Y + + F+L Sbjct: 448 RDFTVDDIAKISDTYHNWQKQD--GYENIPAFCYSA-TLDEIAKNDFVLTAGRYV---GA 501 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 +T ++ + +Q E + E++K Sbjct: 502 VTEEDDGVPFSDKMQELTACLNEQFKQERELEQQITENLK 541 >gi|308063356|gb|ADO05243.1| type I restriction-modification system, M subunit [Helicobacter pylori Sat464] Length = 529 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 124/581 (21%), Positives = 211/581 (36%), Gaps = 88/581 (15%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48 M A L N IWK A +L G DF + +L R + + Sbjct: 1 MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60 Query: 49 --EPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 E + Y + E +K G+ F S + L + T +L + Sbjct: 61 NKEERKRDPSFDYAKLSDEEAEGAKEGLIKEKGF-FIPPSALFCNVLKNARTNEDLNVTL 119 Query: 105 -ASFSD------------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148 F++ N K +F D D +S + + L KI + ++L Sbjct: 120 QNIFNEIEKSSLGFESEENVKGLFADLDVNSNKLGSSHKNRVEKLAKILQAIGDMQLGDY 179 Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 180 QKSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK------- 232 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-- 283 Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +I G TL + F +SNPP+ KW + + + RF P Sbjct: 284 ---YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPI-----LINDERFSP 335 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + + F MH+ + L G AIV L+ G A E++IR L++ Sbjct: 336 AGVLAPKNAADLAFTMHMLSYLSNS----GTCAIVEFPGVLYRGNA---EAKIREHLVKE 388 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 389 NFIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKL 441 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 + R +IL Y R+ K L + + + L E Sbjct: 442 KEHNREKILQTYTERKTIKHFSALAN---------MEKIKENDYNLSVNRFVEQEDTKEI 492 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q ES +KE + A Sbjct: 493 IDIKALN----GEISQIVEKQSALRNSLESIIKELEEGQNA 529 >gi|224826952|ref|ZP_03700050.1| type I restriction-modification system, M subunit [Lutiella nitroferrum 2002] gi|224600785|gb|EEG06970.1| type I restriction-modification system, M subunit [Lutiella nitroferrum 2002] Length = 544 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 122/586 (20%), Positives = 207/586 (35%), Gaps = 99/586 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MT+F L N +W A+ L G DF +L F LR L E + + Y Sbjct: 1 MTDFEK--QKLGNTLWTIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGADY 58 Query: 60 LAFGGSN--------------IDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--- 101 + E ++ Y Y + + E Sbjct: 59 PELEPEDRLSPLSFWYADNAVDVPEFEKQMRRKVHYVIEPQYLWGNIAEMARTQDDELLS 118 Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 YI SF+ + +F + + +S +L E+ L KI + L Sbjct: 119 TLQSGFKYIEEESFASTFRGLFSEINLAS--DKLGKTYAERNARLCKIIAEIAK-GLGQF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + + YE+LI +F + + A +F TP+ + + +A++ + + Sbjct: 176 STDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHLDS 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + + + I HGQE T+ + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRHRM-------GPHGIGKIHGQEKNITTYNLARMNMLLHGVK--- 285 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D +I G TL + +F ++NPPF +WE + GE Sbjct: 286 --DSEFDIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSEA-------LGE 336 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L+ G AI+L LF G A E+ IR Sbjct: 337 DTRFKNYGLAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---EARIRT 389 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL + I+ ++ LP +LFF T I + +L K V INA + + GK Sbjct: 390 KLLNDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GK 442 Query: 440 KRRII--NDD-------QRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 ++ + D+ +I+D Y R E ++S RR+ + + F Sbjct: 443 RQNQLLRTDEMPSGGIGHIEKIIDTYQYRKEEPRYS----------RRVSMEEIEKNDFN 492 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 L+ + L +H+ + + + Sbjct: 493 LNISRYVSTAETEEEIILGNVHEQLLSLDKQIKAATEKHNAFLKEL 538 >gi|313668698|ref|YP_004048982.1| type I restriction-modification system protein [Neisseria lactamica ST-640] gi|313006160|emb|CBN87622.1| putative type I restriction-modification system protein (ec 2.1.1.72) [Neisseria lactamica 020-06] Length = 514 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 187/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ R F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGT---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|71900226|ref|ZP_00682364.1| Type I restriction-modification system M subunit [Xylella fastidiosa Ann-1] gi|71729999|gb|EAO32092.1| Type I restriction-modification system M subunit [Xylella fastidiosa Ann-1] Length = 527 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 121/510 (23%), Positives = 208/510 (40%), Gaps = 78/510 (15%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTR 52 M+ A L IW+ A DL G DF +L R + L EP Sbjct: 1 MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQEPRT 60 Query: 53 SAVREK--YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100 ++ Y + + V FY + + N L Sbjct: 61 GNEKDDFDYAQLSDARAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120 Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146 S I S S+ + K +F+D D +S ++L ++ L K+ + + E Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGG 178 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+L++ + S + +F TP++V L T + + + K Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP CG+G L N V G +GQE+ T+ +C M + + Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284 Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + +I G TL+ + F +SNPP+ KW+ D +A+ RF Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334 Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P L S + F +H+ + L + G AAIV L+ G A E +IR++L++ Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 N+ ++A++ LP DLFF T IAT + +L K + ++A+ L+ G K Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440 Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRT 472 ++ +++ILD + +R+N + F+R++D Sbjct: 441 LSTAHQKKILDGFTARQNIEHFARLVDNSD 470 >gi|196037385|ref|ZP_03104696.1| type I restriction-modification system, M subunit [Bacillus cereus NVH0597-99] gi|196031627|gb|EDX70223.1| type I restriction-modification system, M subunit [Bacillus cereus NVH0597-99] Length = 526 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 120/572 (20%), Positives = 216/572 (37%), Gaps = 86/572 (15%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------------- 47 T + L IW A+D+ G DF + +L R + Sbjct: 9 TNEGAQRSELHRKIWAIADDVRGAVDGWDFKQYVLGILFYRFISENMTAFFNQAEHEAGD 68 Query: 48 LEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNTRNNLE 101 LE + + E F + ++ + F + F N + S + N +E Sbjct: 69 LEFDYAKLSDAEAEKDFRPNTVEDKGFFILPSQLFENVVKTSRTNEDLNIDLANIFKAIE 128 Query: 102 SYIASFSD--NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDR 153 + F+ + K +F D +T RL EK L I + I+ H + Sbjct: 129 ASAIGFASESDIKGLFA--DLDTTSNRLGGIVAEKNKRLADILCGIAEIDFGHFEDNDID 186 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+LI + S + +F TP+ V L L++D I +YDPT Sbjct: 187 AFGDAYEYLISNYASNAGKSGGEFFTPQSVSRLLARLVMDGKV--------KINKVYDPT 238 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + +GQE+ + M + + + Sbjct: 239 CGSGSLLLQMKKQFEEHIIEDG------FYGQEINITNFNLARMNMFLHNINYN-----H 287 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I++G TL + ++ F +SNPP+ KW D RF P L Sbjct: 288 FSIKRGDTLLNPMHNDEKPFDAIVSNPPYSIKWVGADDPT-----LINDERFAPAGKLAP 342 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F+MH + L GRAAIV + A E IR++L++N+ ++ + Sbjct: 343 KSKADFAFIMHSLSYLSSK----GRAAIVCFPGIFYRAGA---EQTIRKYLVDNNFVDCV 395 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 +ALP +LFF T+IAT + +L+ K E K I+A+ + +G ++ Sbjct: 396 IALPENLFFGTSIATNILVLAKNKIE---NKTLFIDASREF----KKGTNNNVLEPKNIE 448 Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 I+ + R++ ++ S+++D + + + L + E ++ Sbjct: 449 NIVSAFRDRDDIEYFSKLVDN----------EKIVESEYNLSVSTYVEKEDTREKININE 498 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 L++ +I + +++ + +KE K Sbjct: 499 LNR----EIAETVIKIDELRASIDEIMKELSK 526 >gi|171920731|ref|ZP_02931943.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178769|ref|ZP_02964571.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024396|ref|ZP_02997059.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518458|ref|ZP_03003945.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524187|ref|ZP_03004251.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867477|ref|ZP_03079481.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273583|ref|ZP_03206119.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550744|ref|ZP_03771693.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551327|ref|ZP_03772273.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903476|gb|EDT49765.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209382|gb|EDU06425.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018667|gb|EDU56707.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998124|gb|EDU67221.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659966|gb|EDX53346.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660953|gb|EDX54206.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250103|gb|EDY74883.1| type I restriction-modification system, M subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379142|gb|EEH01507.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379898|gb|EEH02260.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 510 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 108/560 (19%), Positives = 219/560 (39%), Gaps = 64/560 (11%) Query: 1 MTEFTGSA---ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRS 53 M + +AN +W + ++L G+ + +I+ L+ + A+ + Sbjct: 1 MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKD 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAG-----YSFYN-TSEYSLSTLGSTNTRNNLESYIASF 107 ++K+ ++ DL S G + +N S ++ + I + Sbjct: 61 KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + K +F S + + L + + F+ + + ++ IYE+ + F Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDF--SQFNEDLVGRIYEYFLGEFF 173 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + +F TP+ VV L +L P +YDP CGTGG A N++ Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + + +GQE + +T + +L+ + + T +DL Sbjct: 224 HEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGS---EDTFKEDLH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 G++F ++NPPF K ++ + E RF G+P ++ + +L+H+ +KL Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKLN 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+A ++L++ L + ES +R+ ++E ++++AI++LP LF+ T I+ + Sbjct: 331 SR----GKAGVILANGSLSSSNKE--ESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 W + K E V I A+ + K R + D +I ++Y E G+ Sbjct: 385 WFFNKNKENE---NVLFIEASKMGELKTK---KLRFLTKDDISKIKNVYDKHEQGE---- 434 Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 D G+ + + + + L E ++ + + L + ++ Sbjct: 435 -DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIKGLQEELSVLFDEL 493 Query: 527 YPYGWAESFVKESIKSNEAK 546 KESIK K Sbjct: 494 EDLIPQ---AKESIKKVLEK 510 >gi|308389007|gb|ADO31327.1| type I restriction enzyme EcoR124II M protein [Neisseria meningitidis alpha710] gi|325135951|gb|EGC58561.1| type I restriction-modification system, M subunit [Neisseria meningitidis M0579] gi|325207870|gb|ADZ03322.1| type I restriction-modification system, M subunit [Neisseria meningitidis NZ-05/33] Length = 514 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + F N + E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 280 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ I+ Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGSFFKKETN----NNVLTEEHIADIVK 440 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 441 LFADKADVPH 450 >gi|325129941|gb|EGC52740.1| type I restriction-modification system, M subunit [Neisseria meningitidis OX99.30304] Length = 513 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + F N + E + +T + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +LS K +Q I+A + N ++ ++ I+ Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGSFFKKETN----NNVLTEEHIADIVK 439 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 440 LFADKADVPH 449 >gi|289168442|ref|YP_003446711.1| type I restriction-modification system DNA methylase [Streptococcus mitis B6] gi|288908009|emb|CBJ22849.1| type I restriction-modification system DNA methylase [Streptococcus mitis B6] Length = 523 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 119/503 (23%), Positives = 191/503 (37%), Gaps = 68/503 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------A 47 ++ L IW A+D+ G DF + IL R + Sbjct: 3 SKENAERKELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISEHMADYFDRAEHEAGD 62 Query: 48 LEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101 LE + + E F ++ + F + F N E L N +E Sbjct: 63 LEFRYAELSDQEAEQDFKPGTVEDKGFFILPSQLFENVVENASQNENLNEDLANIFQAIE 122 Query: 102 SYIASF--SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHP-DTVPDRVM 155 F D+ K +F++ D S I EK L I + I + Sbjct: 123 KSAIGFKSEDDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDIDAF 182 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + S + +F TP+ V L L++ D I +YDPTCG Sbjct: 183 GDAYEFLISNYASNAGKSGGEFFTPQTVSKLLARLVMVGKD--------KINKVYDPTCG 234 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L D GQE+ + + M + + + + + Sbjct: 235 SGSLLLQMKKQYEDHILEDG------FFGQEINMTNYNLARMNMFLHNINYN-----NFD 283 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I++G TL ++ F +SNPP+ KW D D RF P L S Sbjct: 284 IKRGDTLLNPQHLEEKPFDAIVSNPPYSVKWVGDGDPT-----LINDDRFAPAGKLAPKS 338 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F+MH N L GRAAIV + G A E IR++L++N+ +EA+++ Sbjct: 339 KADFAFIMHSLNHLSNK----GRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAVIS 391 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF T+IAT + +L+ K E K I+A+ + N ++ D I Sbjct: 392 LPDNLFFGTSIATTILVLAKNKLE---NKTLFIDASKEFKKETN----NNVLTDSNIEHI 444 Query: 453 LDIYVSRENGKF-SRMLDYRTFG 474 ++++ + +N + S ++ G Sbjct: 445 VELFSNYQNVDYKSALVGNDVIG 467 >gi|330957222|gb|EGH57482.1| type i restriction enzyme EcoR124II M protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 519 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 117/490 (23%), Positives = 187/490 (38%), Gaps = 66/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 MT T A+L IW A D+ G DF + +L R + Sbjct: 1 MT-STQQRAALQRQIWAIANDVRGAVDGWDFKQYVLGTLFYRFISENFVDYITGGDSSVN 59 Query: 50 -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTNTRNNLESYI 104 P+ A I + + F N S + +ES Sbjct: 60 YPSMEDDDPLISAAKDDAIKTKGYFIAPSQLFSNVAAKASTNDSLNTDLKRIFDAIESSA 119 Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 ++ + I F DF +T RL +K L + K S +E + + Sbjct: 120 NGYASE-QDIKGLFADFDTTSNRLGNTVADKNKRLADVLKGVSKLEFGSFDASHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP CG+G Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H GQE+ T+ + M + + D +IQ Sbjct: 231 SLLLQAKKHFDAHVIQDG------FFGQEVNHTTYNLARMNMFLHNINYDKF-----DIQ 279 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL F + F +SNPP+ KW +D RF P L S Sbjct: 280 LGDTLRHPHFGDDKPFDAIVSNPPYSVKWIGSEDPT-----LINDDRFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L +G GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 335 DFAFVLHALSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T IA + +L+ KT+ Q I+A+ L+ +G ++ D +I+ Sbjct: 388 PNLFFGTTIAVNILVLAKNKTDTTT---QFIDASALF----KKGTNNNLLEDAHVERIMQ 440 Query: 455 IYVSRENGKF 464 ++ S+EN Sbjct: 441 VFDSKENVDH 450 >gi|269468493|gb|EEZ80151.1| type I site-specific deoxyribonuclease [uncultured SUP05 cluster bacterium] Length = 437 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 92/471 (19%), Positives = 179/471 (38%), Gaps = 70/471 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFGG 64 L +W A +L G +F IL F + L + + + + YL+ Sbjct: 7 KKLEQKLWDIANELRGKMDADEFRDYILGFIFYKYLSEKILSYANKLLAEDGITYLSLDE 66 Query: 65 SNIDLESFVKVAGYS-------FYNTSEYSLSTLG------STNTRNNLESYIASFSDNA 111 + D ++ F SE + +L + + + Sbjct: 67 DSADGAEYLDAIKEEAVEKLGYFLKPSELFGEIAKRGNGDTNNFILEDLTQILRNVEQST 126 Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + DF L+ K L+ K+ + I D + V+ + Y Sbjct: 127 MGYESEDDFGHLFEDLDLTSTKLGRTEEAKNTLIAKVLFHLDQINFDLDNIESDVLGDAY 186 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI +F + + A +F TP+ V + ++ ++++YDPTCG+G Sbjct: 187 EYLIGQFAAGAGKKAGEFYTPQQVSKVLAKIVTTGK--------SKLKSVYDPTCGSGSL 238 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L V D + +GQEL T+ + M++ + +I+Q Sbjct: 239 LLRVAKEVDD---------VSNFYGQELNRTTYNLARMNMILHDIH-----YRKFDIKQE 284 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 T+ +RF ++NPPF W + + + + L + F+ Sbjct: 285 DTIEHPQHIDERFEAVVANPPFSAHWSANPLHMSDDRFSQY-----GKLAPKTKADFAFV 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLF 398 H+ ++L + G AIVL LF G A E IR++L+E + ++A++ LP ++F Sbjct: 340 QHMIHQL----DENGTMAIVLPHGVLFRGAA---EGHIRKYLIEDKNYLDAVIGLPANIF 392 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 + T+I T + + +K E + I+A++ + ++ + + D+ Sbjct: 393 YGTSIPTCVLVF--KKCREDSSNILFIDASNEFEKVKA----QNYLTDENV 437 >gi|223042077|ref|ZP_03612253.1| putative type I restriction-modification system, methyltransferase subunit [Actinobacillus minor 202] gi|223017152|gb|EEF15588.1| putative type I restriction-modification system, methyltransferase subunit [Actinobacillus minor 202] Length = 840 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 109/494 (22%), Positives = 184/494 (37%), Gaps = 72/494 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + LA +W +A DL G +++ IL F + L + + Sbjct: 2 NKQQLAATLWASANDLRGKMDASEYKNYILGFLFYKFLS----EHQENYLVQNE-VSFEE 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDFDF 120 +D +S + Y ++ L TN N + I F++N + DF Sbjct: 57 LDSDSIETIKEDLGYFIAQEDLYRTWLTNIGENKWKLSHVTDAINHFNENLYDS-QKDDF 115 Query: 121 SSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + L +K + K+ + +GI++ D V IYE+LI +F Sbjct: 116 EGVFSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKIT-DNSEYDVFGYIYEYLIAQFAM 174 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP V + ++ D +YDPT G+G L V Sbjct: 175 ASGKKAGEFYTPNQVSRIMAEIVADEL------RQKEQCAVYDPTAGSGSLLLTVSEAVN 228 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE T+ + +L+R ++ ++ TL D Sbjct: 229 RN----EHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMI-----LRNADTLKSDWPY 279 Query: 289 GKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFL 339 G+ ++NPP+ KW+ ++ + RF G + FL Sbjct: 280 GEINGEDTPLFVDCVVANPPYSAKWDTERA--------DKDVRFKEYGTAPATKADYAFL 331 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G E +IR LL+ I+AI+ LP +F Sbjct: 332 LHSLYHLKSD----GIMAIVLPHGMLFRGNE---EEKIRTKLLQRRQIDAIIGLPAGIFT 384 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + IL + + V I+A+ + +N ++ + ++ILD+Y R Sbjct: 385 NTGIPTIVMILRK---QPKHNNVLFIDASQGFRKEKNS----NVLRERDIKKILDVYRKR 437 Query: 460 E-NGKFSRMLDYRT 472 E FS + D Sbjct: 438 EVQAGFSHLADLAE 451 >gi|229089986|ref|ZP_04221238.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock3-42] gi|228693333|gb|EEL47042.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock3-42] Length = 530 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 105/485 (21%), Positives = 197/485 (40%), Gaps = 68/485 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLA-- 61 A L + ++ A++L ++ +L + L L E+Y Sbjct: 1 MAELNSKLFSAADNLRSKMDAAEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTQE 60 Query: 62 ---------FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASFS- 108 +I + + Y+ L + + + N L +F Sbjct: 61 KQAQLYRDLLAAEDIKNDLIETLVDTLGYDIEPDYLFNVLTNQAKQNTFQLNDLNKAFIA 120 Query: 109 -----DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 D +F+D D S ++ + ++ K + +++ V+ + YE Sbjct: 121 LSTKYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDVDVM--GHDGDVIGDAYE 178 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI +F SE + A +F TP +V + + ++ + +++DPT G+G + Sbjct: 179 FLIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQES------KKLFSVFDPTMGSGSLM 232 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + N++ P + HGQEL T+ + +++ ++ + R ++ Sbjct: 233 LNIRNYI-------NFPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR-----LRNAD 280 Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 TL+KD T + + + L NPP+ KW D ++ R+G L S F Sbjct: 281 TLNKDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLDDSR----FNRYG-KLAPKSKADFAF 335 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G AIVL LF G A E IR+ LLE+ I+A++ +P +LF Sbjct: 336 LLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLF 388 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + IL +T V I+A++ +T GK + ++ + +I++ Y Sbjct: 389 FGTSIPTTVIILKKNRTTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETYKK 441 Query: 459 RENGK 463 RE+ + Sbjct: 442 REDVE 446 >gi|331087343|ref|ZP_08336411.1| type I restriction-modification system [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408369|gb|EGG87844.1| type I restriction-modification system [Lachnospiraceae bacterium 9_1_43BFAA] Length = 520 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 113/554 (20%), Positives = 199/554 (35%), Gaps = 71/554 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTRS 53 T+ L IW A++L G DF +L R + L + Sbjct: 4 TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYINSGEADAGN 63 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 A + + + F SE + NL + + + Sbjct: 64 AGFDFAKIADEDAEEAREGLVEEKGFFILPSELFCNVRADAANDENLNETLERVFRHIEE 123 Query: 114 -------------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154 +F+D+D +S +L ++ L K+ + L Sbjct: 124 SAQGSESESDFAGLFDDYDVNS--NKLGATVAKRNEKLVKLLNGVGEMNLGDVKDHSIDA 181 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+L+ + S + +F TP DV L T L + K +YDP C Sbjct: 182 FGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYDPAC 233 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L A + K +GQE+ T+ +C M + + D Sbjct: 234 GSGSLLLKAEKIL------GKDAIRNGFYGQEINITTYNLCRINMFLHDVGFDKF----- 282 Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 NI TL + F +SNPP+ KW + + RF P L Sbjct: 283 NIACEDTLLAPQHWDDEPFELIVSNPPYSIKWAGTDNPL-----LINDPRFSPAGVLAPK 337 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S M F+MH + L G AAIV ++ G A E +IR++L++N+ ++ I+ Sbjct: 338 SKADMAFIMHSLSWLAP----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCII 390 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP++LFF T+IAT + ++ K + K I+AT + N + + + Sbjct: 391 QLPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATSECVKVTN----NNKLTPENIDR 443 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D + RE + F+ + Y + + + + ++ + +++ Sbjct: 444 IVDGFAKREEVEHFAHLASYEEVSGNDYNLSVSTYVEAEDTREKIDIVKLNAEIKEIVAR 503 Query: 511 HQSFWLDILKPMMQ 524 Q +I K + + Sbjct: 504 EQVLRDEIDKIIAE 517 >gi|297582533|ref|YP_003698313.1| type I restriction-modification system, M subunit [Bacillus selenitireducens MLS10] gi|297140990|gb|ADH97747.1| type I restriction-modification system, M subunit [Bacillus selenitireducens MLS10] Length = 531 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 108/559 (19%), Positives = 215/559 (38%), Gaps = 73/559 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRSA 54 A L ++ A++L +++ +L + L L T Sbjct: 3 AELNAKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLIKVVELADESLDTYDTPDK 62 Query: 55 VREKYLA-FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASFS-- 108 E Y + + V Y+ L + + + N L +F Sbjct: 63 QTELYEELLSDKDTKEDLIATVVDTLGYDIEPPHLFNVLAEQAKKNVFQLNDLNKAFIQL 122 Query: 109 ----DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 D +F+D D S ++ + + K + ++L V+ + YE+ Sbjct: 123 STKYDAFSGLFDDVDLQSKKLGSDDQQRNVTVTDVIKKLNDVDLI--GYEGDVIGDAYEY 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + + ++ + +++DPT G+G + Sbjct: 181 LIGQFASEAGKKAGEFYTPHMVSDMMSQIVAIGQED------KKWFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ ++ + R ++ G T Sbjct: 235 NVRNYL-------NHPDKVKYHGQELNTTTFNLAKMNLILHGVDPEEMR-----VRNGDT 282 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L+KD T + + + + NPP+ KW D ++ R+G L S F+ Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADDTFLDDSR----FNRYG-KLAPKSKADFAFV 337 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 338 LHGYYHLKET----GTMAIVLPHGILFRGAA---EGTIRQKLLEDGSIYAVIGMPPNLFF 390 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + IL ++ V I+A+ + GK + ++ + +++D Y R Sbjct: 391 GTSIPTTVLILKKNRSTR---DVLFIDASRDFIK----GKNQNKLSKENIEKVVDTYNKR 443 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 E+ + ++ + + + P ++ ++ ++ + + + Sbjct: 444 ESVEKYAHLATFEEIKENDYNLNIP---RYVDTFEEEEPVDMKAVGTEMKEIQEKKQ-AL 499 Query: 519 LKPMMQQIYPYGWAESFVK 537 K + + I ++E + Sbjct: 500 QKSLFEDISSLQYSEEDAE 518 >gi|291562471|emb|CBL41287.1| type I restriction system adenine methylase (hsdM) [butyrate-producing bacterium SS3/4] Length = 523 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 115/555 (20%), Positives = 200/555 (36%), Gaps = 73/555 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------- 48 T+ L IW A++L G DF +L R + L Sbjct: 4 TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYVNSGEIDAGN 63 Query: 49 -EPTRSAVREKYLAFGGSNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 + + + ++ + E F + F N + N LE Sbjct: 64 TDFDFAKMADENAEEAREGLVEEKGFFILPSELFCNV---RSNAADDENLNETLERVFRH 120 Query: 107 FSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHP-DTVPDR 153 ++AK + DF+ + + L K+ ++L Sbjct: 121 IEESAKGSEAESDFAGLFDDYDVNSNKLGSTVAKRNEKLVKLLNGVGEMKLGDVKDHSID 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + +F TP DV L T L + K +YDP Sbjct: 181 AFGDAYEYLMMMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYDPA 232 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L A + K +GQE+ T+ +C M + + D Sbjct: 233 CGSGSLLLKAEKVL------GKDAIRNGFYGQEINITTYNLCRINMFLHDVGFDKF---- 282 Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 NI TL + F +SNPP+ KW D++ + RF P L Sbjct: 283 -NIACEDTLISPQHWDDEPFELIVSNPPYSIKWAGDENPL-----LINDPRFAPAGVLAP 336 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S M F+MH + L G AAIV ++ G A E +IR++L++N+ ++ I Sbjct: 337 KSKADMAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCI 389 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP++LFF T+IAT + ++ K + K I+AT+ + N + + Sbjct: 390 IQLPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATNECVKVTN----NNKLTPEHIE 442 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 I+D + RE K F+ + Y + + + + ++ + +++ Sbjct: 443 HIVDAFTKREEVKHFAHLASYEEVSSNDYNLSVSTYVEVEDTREKIDIVKLNAEIKEIVA 502 Query: 510 LHQSFWLDILKPMMQ 524 Q +I K + Sbjct: 503 REQVLRDEIDKIIAD 517 >gi|21674693|ref|NP_662758.1| type I restriction system adenine methylase [Chlorobium tepidum TLS] gi|21647900|gb|AAM73100.1| type I restriction system adenine methylase [Chlorobium tepidum TLS] Length = 518 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 125/546 (22%), Positives = 212/546 (38%), Gaps = 65/546 (11%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63 A L IW+ A D+ G DF + +L R + A + +Y Sbjct: 5 QQRAELQRRIWQIANDVRGTVDGWDFKQYVLGALFYRFISENFAAHMEAGDDGIRYAELP 64 Query: 64 GSNIDLE---SFVKVAGYSFY-------NTSEYSLSTLGSTNTRNNLESYIASFS--DNA 111 S I E +K GY Y + + + +T+ + +S + + Sbjct: 65 DSVITPELKDDAIKTKGYFIYPSQLFANVVARANTNDSLNTDLAAIFTAIESSANGYPSE 124 Query: 112 KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164 + I F DF +T RL +K L + K + ++ P D + + YE LI Sbjct: 125 QDIKGLFADFDTTSNRLGNTVKDKNQRLAAVLKGVAELDFGPFDDAHIDLFGDAYEFLIS 184 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + +F TP+ V L L L ++ K +YDP CG+G L A Sbjct: 185 NYAANAGKSGGEFFTPQHVSRLIARLALHGQKSVNK--------IYDPACGSGSLLLQAK 236 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + GQE T+ + M + + D NIQ G+TL + Sbjct: 237 KPFDERLIEDG------FFGQESNHTTYNLARMNMFLHNINYDKF-----NIQLGNTLLE 285 Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341 F ++ F +SNPP+ KW D RF P L S F++H Sbjct: 286 PHFADEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFVLH 340 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L + GRAAIV + G A E++IR++L++N+ +E ++AL +LFF T Sbjct: 341 ALHYL----SAKGRAAIVCFPGIFYRGGA---EAKIRQYLVDNNYVETVIALAPNLFFGT 393 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 IA + +LS K + Q I+A+ L+ N ++ D+ QI+ ++ S+E Sbjct: 394 TIAVNILVLSKHKPDTTT---QFIDASALFKKETN----NNVLLDEHIEQIMAVFASKEE 446 Query: 462 GKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 S L+ + V + + +A+L A++ +D Sbjct: 447 VPHVAQSVPLERIAANNYNLSVSSYVEARDTREVVDIAQLNAELKTTVARIDELRKQIDA 506 Query: 519 LKPMMQ 524 + ++ Sbjct: 507 IVAEIE 512 >gi|119715342|ref|YP_922307.1| type I restriction-modification system, M subunit [Nocardioides sp. JS614] gi|119536003|gb|ABL80620.1| type I restriction-modification system, M subunit [Nocardioides sp. JS614] Length = 519 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 108/490 (22%), Positives = 187/490 (38%), Gaps = 70/490 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE- 57 MT+ L IW+ A DL G DF +L R + L + Sbjct: 1 MTKEVE-RTELHRTIWRIANDLRGSVDGWDFKAYVLGMLFYRFISENLTAYLNKQERAAG 59 Query: 58 ----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSDNA- 111 Y ++ + V FY + + + + NL +A N Sbjct: 60 NPDFDYRHLSNADAEFGREETVKEKGFYILPQDLFANVRERARHDENLNETLARVFRNIE 119 Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 K +F+D D +S ++L ++ L K+ + L + Sbjct: 120 ASSIGADSEEDFKGLFDDLDVNS--SKLGSTVAKRNEKLVKLLDAVGDLRLGHNGNTIDA 177 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+L+ + + ++ TP++V L + + + K +YDP C Sbjct: 178 FGDAYEYLMGMYAANAGRSGGEYYTPQEVSELLARIAVVGKTEVNK--------VYDPAC 229 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + GQE+ T+ +C M + + + Sbjct: 230 GSGSLLLKFDKVLGHENVRQG------YFGQEINLTTYNLCRINMFLHDINYEKF----- 278 Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 +I G TL+ + F +SNPP+ KW D D + RF P L Sbjct: 279 DIAHGDTLTDPAHWDDEPFEAIVSNPPYSTKWAGDADPL-----LINDPRFAPAGVLAPK 333 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S + F MH+ + L + G AAIV L+ A E +IR++L++N+ ++ ++ Sbjct: 334 SKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRSGA---EQKIRKYLVDNNYVDTVI 386 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP DLFF T IAT + +L K + K I+A+ + +G K + +++ Sbjct: 387 QLPPDLFFGTTIATCIIVLKKSKAD---NKTLFIDASAEFI---RQGNK-NKMPAANQQR 439 Query: 452 ILDIYVSREN 461 ILD + +RE+ Sbjct: 440 ILDAFSARED 449 >gi|268596452|ref|ZP_06130619.1| type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae FA19] gi|268603244|ref|ZP_06137411.1| type I restriction-modification system protein [Neisseria gonorrhoeae PID1] gi|268681724|ref|ZP_06148586.1| type I restriction-modification system protein [Neisseria gonorrhoeae PID332] gi|268550240|gb|EEZ45259.1| type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae FA19] gi|268587375|gb|EEZ52051.1| type I restriction-modification system protein [Neisseria gonorrhoeae PID1] gi|268622008|gb|EEZ54408.1| type I restriction-modification system protein [Neisseria gonorrhoeae PID332] Length = 514 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 2 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N +E + +T + + +S S Sbjct: 61 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120 Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + + I F DF +T +RL +K L + K + ++ + + + Y Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + + +I+ G Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ W D RF P L S Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL + Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYCGGA---EQKIRQYLVEGNYVETVIALAPN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ ++ Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 442 Query: 457 VSRENGKF 464 + + Sbjct: 443 ADKADVPH 450 >gi|256845972|ref|ZP_05551430.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_36A2] gi|294784903|ref|ZP_06750191.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_27] gi|256719531|gb|EEU33086.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_36A2] gi|294486617|gb|EFG33979.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_27] Length = 520 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 120/560 (21%), Positives = 212/560 (37%), Gaps = 83/560 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52 ++ A L IW A DL G DF + +L R + L E Sbjct: 3 SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGN 62 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA- 111 S L+ + + E ++ G+ F SE ++ + NL + + N Sbjct: 63 SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIE 121 Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 K +F+D D ++ +L ++ L + ++L Sbjct: 122 SSANGTESENDLKGLFDDIDVNN--NKLGGTVAKRNENLVNLINGVGDMKLGDYQENTID 179 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + ++ TP++V L T + L + K +YDP Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDPA 231 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 232 CGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF---- 281 Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 282 -DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLAP 335 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ I Sbjct: 336 KSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDGI 388 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LF+ T+IAT + +L K KV I+A+ + + N I + Sbjct: 389 IQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKITEKHID 441 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADITW 504 I++ + REN ++ L Y +I V +S + +E + Sbjct: 442 DIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKVDIVELNKEI 496 Query: 505 RKLSPLHQSFWLDILKPMMQ 524 ++ + +I K + + Sbjct: 497 ERIVAREEELRKEIDKIIAE 516 >gi|240013720|ref|ZP_04720633.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae DGI18] gi|240080302|ref|ZP_04724845.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae FA19] gi|240117541|ref|ZP_04731603.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae PID1] gi|240120790|ref|ZP_04733752.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae PID24-1] gi|240123095|ref|ZP_04736051.1| Type I restriction enzyme EcoR124II M protein [Neisseria gonorrhoeae PID332] Length = 513 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MTE A L IWK A+++ G DF + +L R + A Sbjct: 1 MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108 + ++ + G F N + E + +T + + +S S Sbjct: 60 YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 --DNAKAIFEDFD-FSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + + I FD F +T +RL +K L + K + ++ + + + Y Sbjct: 120 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 179 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI + + + +F TP+ V L L + + + K +YDP CG+G Sbjct: 180 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 231 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + + +I+ G Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELG 280 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL+ + F +SNPP+ W D RF P L S Sbjct: 281 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL + Sbjct: 336 AFILHALNYL----SGRGRAAIVSFPGIFYCGGA---EQKIRQYLVEGNYVETVIALAPN 388 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF+ T IA + +LS K +Q I+A + N ++ ++ +I+ ++ Sbjct: 389 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 441 Query: 457 VSRENGKF 464 + + Sbjct: 442 ADKADVPH 449 >gi|289449831|ref|YP_003475628.1| type I restriction-modification system subunit M [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184378|gb|ADC90803.1| type I restriction-modification system, M subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 522 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 113/561 (20%), Positives = 204/561 (36%), Gaps = 75/561 (13%) Query: 1 MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EP 50 MT T L IW A++L G DF +L R + + E Sbjct: 1 MTLDTKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITNYINAGEI 60 Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSD 109 Y + + V F+ + + + NL + Sbjct: 61 EAGNTEFDYAQMSDDDAEEARQSLVEEKGFFILPSELFCNVKAKAKGDENLNETLEKVFR 120 Query: 110 NAKA-------------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTV 150 + + +F+DFD +S +L ++ L K+ + + + Sbjct: 121 HIEESAKGSESESDFAGLFDDFDVNS--NKLGSTVAKRNEKLCKLLDGVADMNIGDVKNH 178 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + YE+L+ + S + +F TP DV L T + + K +Y Sbjct: 179 DIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRIGTVGKTEINK--------VY 230 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP CG+G L A + + +GQE+ T+ +C M + + D Sbjct: 231 DPACGSGSLLLKAEKVL------GRDKIRNGFYGQEINITTYNLCRINMFLHDIGFDKF- 283 Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 NI TL + F +SNPP+ KW D + + RF P Sbjct: 284 ----NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGDDNPL-----LINDPRFAPAGV 334 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S + F+MH + L G AAIV ++ G A E +IR++L++N+ + Sbjct: 335 LAPKSKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLIDNNYV 387 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + I+ LP++LFF T+IAT + +L K + K I+AT+ + N + Sbjct: 388 DCIIQLPSNLFFGTSIATCIMVLKKGKED---NKTLFIDATNECIKVTN----NNKLTRK 440 Query: 448 QRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +I+D + +R + FS + Y + + + + ++ + ++ Sbjct: 441 NMDKIVDCFANRREIEHFSHLATYDEIAENDYNLSVSTYVEAEDTREKIDIVKLNAEIKE 500 Query: 507 LSPLHQSFWLDILKPMMQQIY 527 + Q D + ++ +I Sbjct: 501 IVAREQ-VLRDEIDKIIGEIE 520 >gi|294781970|ref|ZP_06747302.1| type I restriction-modification system, M subunit [Fusobacterium sp. 1_1_41FAA] gi|294481781|gb|EFG29550.1| type I restriction-modification system, M subunit [Fusobacterium sp. 1_1_41FAA] Length = 520 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 121/562 (21%), Positives = 216/562 (38%), Gaps = 84/562 (14%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57 M A L IW A DL G DF + +L R + L + + Sbjct: 1 MDNKKEQERAELHRTIWSIANDLRGSVDGWDFKQYVLGILFYRYISENLTTYINKGEIEA 60 Query: 58 KYLAFGGSNI-DLESFVKVAGY----SFYNTSEYSLSTLGST------------NTRNNL 100 F +++ D ++ V F+ + N N+ Sbjct: 61 GNPDFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLHNIFTNI 120 Query: 101 ESYIAS-FSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152 E+ S+N K +F+D D +S +L ++ L + ++L Sbjct: 121 ENSANGTESENDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + S + ++ TP++V L T L L + K +YDP Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281 Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 282 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQI-----LINDSRFSPAGVLA 334 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ Sbjct: 335 PKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP +LF+ T+IAT + ++ KT+ KV I+A+ + + N + + Sbjct: 388 IIQLPDNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNS----NKMTEKHI 440 Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADI 502 I++ + REN ++ S ++D Y +I V +S + +E + Sbjct: 441 NDIVEKFTKRENVEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNK 494 Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524 +++ + +I K + + Sbjct: 495 EIQRIVAREEELRKEIDKIIAE 516 >gi|296100300|ref|YP_003620470.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154] gi|295831617|gb|ADG39501.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154] Length = 530 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 100/476 (21%), Positives = 173/476 (36%), Gaps = 68/476 (14%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-----------------CALEPTRSAV 55 IWK + G + +++ I + L E Sbjct: 9 ALIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQTWLDQQLRGETWASVWEQNPEKA 68 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 G I + N +++++ + N + + IF Sbjct: 69 AAFMQTKLGYVIQPGELFSDWQAAI-NVDQFNITNVADALVHFN-QGIQQGAKATFEGIF 126 Query: 116 EDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 +D D +S +RL + S I+ V+ ++YE+LI F + Sbjct: 127 DDMDLTS--SRLGSNTQTRTKTLMDWISLIDQIELDEDADVLGDLYEYLIGMFAANSGAK 184 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP V + +L + + +LYDP G+G L +++ + Sbjct: 185 AGEFYTPHQVSDIMARILTAGREDM------PTYSLYDPAMGSGSLLLTTASYMQ----N 234 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 + + +GQE+ T+ + +++ +E + +I TLS D G Sbjct: 235 DGVRGAIKYYGQEVITTTYNLGRINLMMHGVEYNDI-----HIHNADTLSSDWPDGVQSG 289 Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + F ++NPP+ KW+ D + RF G+ S FL H Sbjct: 290 VDSPRMFDAVMANPPYSLKWDNDN--------REDDPRFKSGIAPKSKADFAFLQHGLYH 341 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GR AIVL LF G A E IR+ LLEN I A++ LP +F T I T Sbjct: 342 LKQD----GRMAIVLPHGVLFRGAA---EGRIRQALLENRNISAVIGLPEKIFTNTGIPT 394 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + IL +T V I+A+ + +N + + I++ ++ RE+ Sbjct: 395 IIMILEKNRT---TDDVLFIDASKGFEKQKN----NNKLRQEDVDLIVETFLKRED 443 >gi|260771741|ref|ZP_05880660.1| type I restriction-modification system M subunit [Vibrio metschnikovii CIP 69.14] gi|260613325|gb|EEX38525.1| type I restriction-modification system M subunit [Vibrio metschnikovii CIP 69.14] Length = 869 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 102/492 (20%), Positives = 198/492 (40%), Gaps = 64/492 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFG 63 + LA IW++A + + ++ IL F + L T+ + E A Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQQVQFVTKQGMTPEDIKALN 61 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117 + D +++ F Y+ + +N+ +++F S K +FE Sbjct: 62 EEDADTVKYIQDNLGYFIAYDNLFSTWIDPTHDFDESNVRDALSAFSRLISPTYKKLFEG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 +++L ++ + + I ++ V+ IYE+LI +F + Sbjct: 122 IFTTLEKGLSQLGESAGKRTKAISDLLHLIKSIPMNGKQGY-DVLGYIYEYLIEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + V Sbjct: 181 GKKAGEFYTPHEVSVLMSHIIAHELKH------KDTIEIYDPTSGSGSLLINIGEAV--- 231 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 G + K + + QEL+ +T+ + +++R +++ + + G TL D Sbjct: 232 GKYAKNKDSITYYAQELKDKTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ + W+ + RF GL + FL Sbjct: 287 ENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G IVL LF G E EIR+ L+E + I+AI+ LP+++FF Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIEQNHIDAIIGLPSNIFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + +L K + + V +++A+ + K + ++I+D ++R Sbjct: 393 GTGIPTVIIVL---KQKRQNTDVLIVDASKHFVKE----GKNNKLQASDIKRIVDAVINR 445 Query: 460 EN-GKFSRMLDY 470 ++ KFS+++ Sbjct: 446 DSIDKFSQVVSK 457 >gi|298736553|ref|YP_003729079.1| type I restriction enzyme M protein [Helicobacter pylori B8] gi|298355743|emb|CBI66615.1| type I restriction enzyme M protein [Helicobacter pylori B8] Length = 523 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 120/572 (20%), Positives = 209/572 (36%), Gaps = 84/572 (14%) Query: 1 MTEFTGSAA------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------ 48 M + L N IWK A +L G DF + +L R + + Sbjct: 1 MENNPNNNQAFLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINK 60 Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYI-AS 106 E + Y + + F+ + L + +L + Sbjct: 61 EERKHDPSFDYAKLSDEEAERAREELIEEKGFFIPPSALFCNALKNAPNNEDLNVTLQNI 120 Query: 107 FSD------------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVP 151 F++ N K +F D D +S + + L KI + G++L Sbjct: 121 FNEIEKSSLGAPSEENVKGLFADLDVNSNKLGSSHKIRVEKLTKILEAIGGMQLGDYQQS 180 Query: 152 D-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V + YE+L+ + S + +F TP++V L + L +++ K +Y Sbjct: 181 GIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VY 232 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 DPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN----- 281 Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 +I G TL + F +SNPP+ KW D + + RF P Sbjct: 282 YSKFHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPL-----LINDERFSPAGV 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L + + F MH+ + L G AAIV L+ G A E++IR +L++ ++I Sbjct: 337 LAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVI 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + + Sbjct: 390 DCVIALPDNLFFGTSIATCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKER 442 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 R +IL Y+ R+ K L + + + L E + Sbjct: 443 NREKILQTYIERKEVKHFSSLAN---------IEKIKENDYNLSVNRYVEQEDTKEIIDI 493 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 L+ +I + + +Q ES +KE Sbjct: 494 KALN----SEISQIVEKQSALRSSLESIIKEL 521 >gi|170717884|ref|YP_001784939.1| type I restriction-modification system, M subunit [Haemophilus somnus 2336] gi|168826013|gb|ACA31384.1| type I restriction-modification system, M subunit [Haemophilus somnus 2336] Length = 537 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 103/516 (19%), Positives = 191/516 (37%), Gaps = 88/516 (17%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTRSA 54 + ++ +W A +L G +++ IL F R L E + Sbjct: 2 SNVQTITGKLWAMANELRGTMDASEYKNYILAFMFYRYLSKHQELYLVDNHILDIEPSQS 61 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTL-----GSTNTRNNLESYIASFS 108 V + YL + ++ Y E + +L + ++ ++ +F+ Sbjct: 62 VNDAYLTQATGEELQDYLQDISASLGYAINPEDTWDSLMRKIYNAEVMPSDYQALFDNFN 121 Query: 109 DNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 NA + +F D + ++ + E+A L I K IE D ++ Sbjct: 122 QNANLNEDAVLDFRGVFNDLNLGASHLGNSTNERAKSLGNIVKLVDEIEYKDDDG-RDIL 180 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 IYE+LI +F + + +F TP V + L+ +YDPT G Sbjct: 181 GEIYEYLIGQFAANAGKKGGEFYTPHQVSKILAKLVTLDVADN-----QETFLVYDPTMG 235 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L N + + +GQEL T+ + +++ + + Sbjct: 236 SGSLLLTVGNELPQSKP-------IKYYGQELNTTTYNLARMNLMMHGVSYKNMTLSNA- 287 Query: 276 IQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 TL D G RF ++NPP+ KW+ + + + RF Sbjct: 288 ----DTLESDWPEGLDAQGIDQPLCRFDAVVANPPYSAKWDNHE-------RKLKDARFQ 336 Query: 326 P--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL- 382 P L S F++H L G AIVL LF G A E +IR+ L+ Sbjct: 337 PFGALAPASKADYAFILHSLYHLGEH----GTMAIVLPHGVLFRGAA---EGKIRKALIG 389 Query: 383 ------ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 + + ++A++ LP +LF+ T+I T + + + + + I+A+ + Sbjct: 390 DNTSNAQGNYLDAVIGLPANLFYGTSIPTTILVFKKNRKNK---DILFIDASQDFDK--- 443 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 GK + + D+ ++I+D Y +R+N + Sbjct: 444 -GKNQNRLTDEHVQKIIDTYQARQNVDKYAYVASLE 478 >gi|71276002|ref|ZP_00652284.1| Type I restriction-modification system M subunit [Xylella fastidiosa Dixon] gi|71899052|ref|ZP_00681217.1| Type I restriction-modification system M subunit [Xylella fastidiosa Ann-1] gi|71163235|gb|EAO12955.1| Type I restriction-modification system M subunit [Xylella fastidiosa Dixon] gi|71731165|gb|EAO33231.1| Type I restriction-modification system M subunit [Xylella fastidiosa Ann-1] Length = 527 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 127/564 (22%), Positives = 220/564 (39%), Gaps = 80/564 (14%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA 54 M+ A L IW+ A DL G DF +L R + L R Sbjct: 1 MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRT 60 Query: 55 VREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100 EK Y F + +L V FY + + N L Sbjct: 61 GTEKDDFDYAQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120 Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146 S I S S+ + K +F+D D +S ++L ++ L K+ + E Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGG 178 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+L++ + S + +F TP++V L T + + + K Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP CG+G L N V G +GQE+ T+ +C M + + Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284 Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + +I G TL+ + F +SNPP+ KW+ D +A+ RF Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334 Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P L S + F +H+ + L + G AAIV L+ G A E +IR++L++ Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 N+ ++A++ LP DLFF T IAT + +L K + ++A+ L+ G K Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440 Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEA 500 ++ +++ILD R++ + F+R++D + ++ + + L + Sbjct: 441 LSTAHQKKILDSLTVRQDIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNS 500 Query: 501 DITWRKLSPLHQSFWLDILKPMMQ 524 DI +D + ++ Sbjct: 501 DIARIVARQAELRKQIDAIVADLE 524 >gi|238019005|ref|ZP_04599431.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748] gi|237864489|gb|EEP65779.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748] Length = 531 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 101/495 (20%), Positives = 194/495 (39%), Gaps = 72/495 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG---- 64 A L ++ A+ L G + +L + L L + V + Y + Sbjct: 3 AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLES--TVVKAYKSLDEYNTV 60 Query: 65 ---SNIDLESFVKVAGYSF----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + + + F Y+ L + + ++N + + Sbjct: 61 AKQTELYKSYILDDKSKDFFIATMSDTLGYHIEPQYLFSELANAVKDNSFELVHLKNAFV 120 Query: 112 K---------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + +F+D D S + ++ + ++ K +++ V+ + Y Sbjct: 121 RLETAYKQFEGLFDDIDLDSKQLGVDANQRNITISEVIKKLDEVDVL--GHDGDVIGDAY 178 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI F + + A +F TP+ V + ++ + T+YDPT G+G Sbjct: 179 EYLIGEFAAGSGKKAGEFYTPQQVSDMMAQIVTIGQEDT------PSFTVYDPTMGSGSL 232 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + ++ P + HGQEL T+ + +++ + ++ +R + G Sbjct: 233 MLNVRKYL-------NNPDRVQYHGQELNVTTYNLARMNLILHEVSAEDQR-----LHNG 280 Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TL+KD T + + + + NPP+ W D ++ R+G L S Sbjct: 281 DTLNKDWPTDEPYMFDSVVMNPPYSANWSADPTFMDDAR----FNRYG-KLAPKSKADFA 335 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +L Sbjct: 336 FLLHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVIGMPANL 388 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+I T + IL + V I+A++ +T +N + + + ++I+D Y Sbjct: 389 FFGTSIPTTVIILKKNRKGR---DVLFIDASNDFTKFKN----QNKLEPEHIKRIVDTYK 441 Query: 458 SRENGKFSRMLDYRT 472 +RE+ + L Sbjct: 442 NRESIEKYAYLASFE 456 >gi|86137460|ref|ZP_01056037.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp. MED193] gi|85825795|gb|EAQ45993.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp. MED193] Length = 514 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 116/483 (24%), Positives = 194/483 (40%), Gaps = 61/483 (12%) Query: 4 FTGSAA--SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--Y 59 TG L IW A D+ G DF + +L R + A + Y Sbjct: 1 MTGQQQRDELHRQIWAIANDVRGAVDGWDFKQFVLGALFYRFISENFVNYADAGDDNVNY 60 Query: 60 LAFGGSNIDLESFVKV---AGYSFY-------NTSEYSLSTLGSTNTRNNLESYIASFS- 108 S + + ++ GY Y S+ + + +T+ + S + Sbjct: 61 AGMSDSEVPDDFVIEAVKTKGYFIYPSQLFSNVVSQANTNDSLNTDLAAIFAAIEGSANG 120 Query: 109 -DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + + I F DF +T RL +K L + K +G+ L D + + YE Sbjct: 121 YPSEEDISGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLPLTFDDSQRDLFGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI+ + + + +F TP V L + + + K ++DP CG+G L Sbjct: 181 LIKNYAANAGKSGGEFFTPPHVSKLIAKIAIHGQTTINK--------IFDPACGSGSLLL 232 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + D G GQE+ T+ + M + + D NIQ G+T Sbjct: 233 QAKYFLKDHGVEDG------YFGQEINHTTYNLARMNMFLHNINYDKF-----NIQLGNT 281 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L+ F + F +SNPP+ KW+ D RF P L S F Sbjct: 282 LTDPHFGDDKPFDAIVSNPPYSIKWKGSDDPT-----LINDERFAPAGVLAPKSKADFAF 336 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H + L + GRAA+V + G A E +IR++L++N+ +EA++AL +LF Sbjct: 337 VLHALSYL----SAKGRAALVCFPGIFYRGGA---EQKIRKYLVDNNYVEAVIALAPNLF 389 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T IA + +L+ K + VQ I+AT + ++DD +++ I+ S Sbjct: 390 YGTTIAVNILVLAKNK---QNTDVQFIDATGEDFFDKKT--NNNEMSDDHIAEVMRIFDS 444 Query: 459 REN 461 +EN Sbjct: 445 KEN 447 >gi|237738765|ref|ZP_04569246.1| type I restriction-modification system [Fusobacterium sp. 2_1_31] gi|229423868|gb|EEO38915.1| type I restriction-modification system [Fusobacterium sp. 2_1_31] Length = 520 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 121/562 (21%), Positives = 216/562 (38%), Gaps = 84/562 (14%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57 M A L IW A DL G DF + +L R + L + + Sbjct: 1 MDNKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGILFYRYISENLTNYINKGEIEA 60 Query: 58 KYLAFGGSNI-DLESFVKVAGY----SFYNTSEYSLSTLGST------------NTRNNL 100 F +++ D ++ V F+ + N N+ Sbjct: 61 GNPDFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLHNIFTNI 120 Query: 101 ESYIAS-FSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152 E+ S+N K +F+D D +S +L ++ L + ++L Sbjct: 121 ENSANGTESENDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + S + ++ TP++V L T L L + K +YDP Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281 Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 282 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQI-----LINDSRFSPAGVLA 334 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ Sbjct: 335 PKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP +LF+ T+IAT + ++ KT+ KV I+A+ + + N + + Sbjct: 388 IIQLPDNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNS----NKMTEKHI 440 Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADI 502 I++ + REN ++ S ++D Y +I V +S + +E + Sbjct: 441 NDIVEKFTKRENVEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNK 494 Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524 +++ + +I K + + Sbjct: 495 EIQRIVAREEELRKEIDKIIAE 516 >gi|163814568|ref|ZP_02205957.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759] gi|158450203|gb|EDP27198.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759] Length = 889 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 193/490 (39%), Gaps = 71/490 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W + + L G + + IL ++ + + + + Sbjct: 1 MAVKKTELYSSLWASCDALRGGMDASQYKDYILTLLFMKYVTDKYKGQKYGDLTVFDKAN 60 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASF---SDNAKAIFE--D 117 N D E K G SF L + N ++ IA ++ K + + Sbjct: 61 DPNPDPE---KRTGCSF-----DDFIALKNKKNIGEGIDKIIARLAEVNEGLKGVIDIAH 112 Query: 118 FDFSSTIARLEK-AGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEG 173 F+ + I + ++ L K+ F EL D ++ + YE+L+R F SE + Sbjct: 113 FNDEAKIGKDKEMVDKLTKLIAIFQRPELDFSKNKVEGDDIIGDAYEYLMRNFASESGKS 172 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP +V + ++ T+ DP CG+G L A+ Sbjct: 173 KGQFYTPAEVSRILAKIIGIDKCTDHDA------TVCDPACGSGSLLIRAL--------- 217 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------ 287 + P + +GQE + T + ++ + I G+T S F Sbjct: 218 AEAPFEISGYGQEKDGSTAGLAKMNAVLHN-------KATIRIMAGNTFSDPQFMKTDNP 270 Query: 288 -TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLAN 344 +RF+Y ++NPPF K D E GRF G G P +G +LMH+ Sbjct: 271 SELERFNYIVANPPFSLKNWSDG--------LKEFGRFSGYGDRPPEKNGDYAWLMHILK 322 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G+AA++L LF G A E+ IR+ +++ I+ I++LP +LF+ T I Sbjct: 323 TLKST----GKAAVILPHGVLFRGNA---EATIRQTIVDKGWIKGIISLPPNLFYGTGIP 375 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENG 462 + ++ E R G + +I+A + +G K R + + +I+ + + + Sbjct: 376 ACILVIDKEGAENRAG-IFMIDAGKGYV---KDGSKNR-LREQDIYRIVTTFNEQITTDP 430 Query: 463 KFSRMLDYRT 472 K++R + + Sbjct: 431 KYARFVPNKE 440 >gi|95928603|ref|ZP_01311350.1| type I restriction-modification system, M subunit [Desulfuromonas acetoxidans DSM 684] gi|95135393|gb|EAT17045.1| type I restriction-modification system, M subunit [Desulfuromonas acetoxidans DSM 684] Length = 868 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 101/496 (20%), Positives = 191/496 (38%), Gaps = 68/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L LE + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDKLEQFAKSQDFSAEDIRALS 61 Query: 65 SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFSD----NAKAIFED 117 + ++ E+ + G ++ +++FS + K +FE Sbjct: 62 EDDTETVDFIKRNLGYFIAHEHLFSTWIEQGGDFEVAHVRDALSAFSRLIHTDHKDLFEG 121 Query: 118 F--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L + ++ + I V+ IYE+LI F + Sbjct: 122 IFKTLETGLSKLGDTAAKQTKAISELIQLIKDI-PMDGRQGYDVLGFIYEYLISMFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ D K +YD T G+G L + +A Sbjct: 181 GKKAGEFYTPHEVSVLMSEIIADHVKGKEKID------IYDSTSGSGSLLLNIGKSIAKH 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286 + QEL+ T+ + +++R + L NI + G TL D Sbjct: 235 MGNQGTIK---YFAQELKENTYNLTRMNLVMRGI-------LPTNIVTRNGDTLEDDWPF 284 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + +SNPP+ ++W+ D + RF GL S Sbjct: 285 FDDNDPVNSYEPLYLDAVVSNPPYSQQWDPDHKDSDPR-----YSRF--GLAPKSKADYA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G E EIR+ L+E++ ++ I+ LP ++ Sbjct: 338 FLLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGEIRKNLIEDNHLDTIIGLPANI 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + +L K + ++ V +++A+ + K + ++I D + Sbjct: 391 FFGTGIPTIILVL---KQKRQKNDVLIVDASKGFAKE----GKNNKLRACDIKKICDTVI 443 Query: 458 SRENGK-FSRMLDYRT 472 R++ +SR++ + Sbjct: 444 KRQSVPCYSRLVSKKE 459 >gi|300780280|ref|ZP_07090136.1| type I restriction-modification system DNA-methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534390|gb|EFK55449.1| type I restriction-modification system DNA-methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 395 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 82/417 (19%), Positives = 156/417 (37%), Gaps = 53/417 (12%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYLAFGGSNI 67 + +WK A+ L G + + ++L L+ + A + R +R E Sbjct: 11 DTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRQELRAELEEEGATEEETLEE 70 Query: 68 DLESFVKVAGYSFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIF-EDFDF 120 + + F+ + L +++ ++ + A+ + ++ Sbjct: 71 LEDRDAYLEKNVFWVAPKARWDYLQRHSKGKTSDAGGEFKAIGKLIDEAAETLMADNPSL 130 Query: 121 SSTIARLEKAG-----LLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFGSEVSEG 173 T+ + L ++ FS + ++ +YE+ + RF S + Sbjct: 131 EGTLPHNYNSESVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFASAEGKR 190 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VV +L +YDP CG+GG A + Sbjct: 191 GGEFYTPRPVVRTLVEIL-----------EPTEGRVYDPCCGSGGMFVQAEKFLEAHDRD 239 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 P + +GQEL T + + I L + + + G T ++D+ G Sbjct: 240 ---PSAIAIYGQELNERTWRMARMNLAIHALSAKGLGE-----RWGDTFARDIHPGVEMD 291 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y L+NPPF ++ +N + R+ G+P + + ++ H+ +KL G Sbjct: 292 YVLANPPFN---------IKDWVRNTDDTRWMYGVPPEKNANFGWMQHIISKLSPQGEAG 342 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 A + + N SGE EIR+ +LE+D++ ++ LP LF T I +W Sbjct: 343 VVMA---NGTMTSN---TSGEGEIRKNMLEDDIVSCVITLPAQLFRATGIPVCVWFF 393 >gi|229120553|ref|ZP_04249798.1| Type I restriction-modification system, M subunit [Bacillus cereus 95/8201] gi|228662838|gb|EEL18433.1| Type I restriction-modification system, M subunit [Bacillus cereus 95/8201] Length = 530 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 106/485 (21%), Positives = 198/485 (40%), Gaps = 68/485 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY---- 59 A L + ++ A++L +D+ +L T + L L E+Y Sbjct: 1 MAELNSKLFSAADNLRSKMDASDYKNYLLGLTFYKYLSDKLLEKVVEIADESLEEYNTQE 60 Query: 60 -------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASFS- 108 +I + + Y+ L + + + N L +F Sbjct: 61 TQTQLYKELLADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQLNDLNKAFIN 120 Query: 109 -----DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 D +F+D D + ++ + ++ K + +++ V+ + YE Sbjct: 121 LSTKYDQFNGLFDDVDLKTKKLGSDDQQRNITITEVLKKLNDVDVL--GHNGDVIGDAYE 178 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI +F SE + A +F TP +V + + + + +++DPT G+G + Sbjct: 179 FLISQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLM 232 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + N++ P + HGQEL T+ + +++ ++ + R ++ Sbjct: 233 LNIRNYI-------NYPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR-----LRNAD 280 Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 TL+KD T + + + L NPP+ KW D ++ R+G L S F Sbjct: 281 TLNKDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLDDSR----FNRYG-KLAPKSKADFAF 335 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L+ G AIVL LF G A E IR+ LLE+ I+A++ +P +LF Sbjct: 336 LLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLF 388 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T+I T + IL +T V I+A++ +T GK + ++ + +I++ Y Sbjct: 389 FGTSIPTTVIILKKNRTTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETYKK 441 Query: 459 RENGK 463 RE+ + Sbjct: 442 REDVE 446 >gi|237807983|ref|YP_002892423.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas auensis DSM 9187] gi|237500244|gb|ACQ92837.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas auensis DSM 9187] Length = 567 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 105/603 (17%), Positives = 197/603 (32%), Gaps = 104/603 (17%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57 M E L +W A+ L + +L ++ + A + ++ Sbjct: 1 MNELEQQFLKDLEKKLWNAADKLRATLDAAQYKHAVLGLIFVKYVSDAFSIRQDEIKADL 60 Query: 58 ---KYLAFGGSNI-------------DLESFVKVAGYSFYNTSEYSLSTLGST------- 94 ++ + + + F+ +E L Sbjct: 61 ANPEHEYYLDPDDFTPEELAEEIAIELEQRDYYTEKNVFWLPTESRWKFLQDNGPLVIGG 120 Query: 95 ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 + +N I + K + + I + L ++ Sbjct: 121 ADLVIDSKPKKITSVGHLIDNALEGIERDNPKLKGVLNKHYAALKIDQ----AKLNELIN 176 Query: 139 NFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + I + ++ +IYE+ + F + F TP +V L ++ Sbjct: 177 LIATIPFTHKSLNSKDILGHIYEYFLGEFALAEGKKGGQFYTPASIVTLIVEMI------ 230 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252 +YDP G+GGF + + + I + +GQE T Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERYAGKNNIDPLTQKQKISIYGQEYNYTTW 285 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M IR L+ D ++ + ST + D R + ++NPPF K Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNDQHPDLRADFIMANPPFNMKEW------ 333 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + R+ G P + + +L H+ L G +A ++ + S Sbjct: 334 -DAGVDDNDPRWKYGKPPSGNANFAWLQHMLYHLAPN---GSQALLLANGSMSSTTNN-- 387 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKV 422 E EIR+ L+ NDLIE +VALP LF T I +W L+N K E R+G+V Sbjct: 388 -EGEIRKNLVTNDLIECMVALPGQLFTNTQIPACIWFLTNNKGERTDKAGRKLRNRKGEV 446 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480 I+A L R D +++ DI+ + + G+ + Y G+ + + Sbjct: 447 LFIDARQLGYMKDRV---LRDFTMDDIQKVADIFHAWKMGEAVNGVAYEDQAGFCKSASL 503 Query: 481 LRPLRMSFILDKTGL--ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + F+L A +E D + + + +Q E+ +K+ Sbjct: 504 EEITKHDFVLTPGRYVGAAVEEDDGI-----PFTEKMATLTEKLSEQFAESAKLEAEIKQ 558 Query: 539 SIK 541 + Sbjct: 559 KLV 561 >gi|170731320|ref|YP_001776753.1| type I restriction-modification system DNA methylase [Xylella fastidiosa M12] gi|167966113|gb|ACA13123.1| type I restriction-modification system DNA methylase [Xylella fastidiosa M12] Length = 527 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 127/564 (22%), Positives = 220/564 (39%), Gaps = 80/564 (14%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA 54 M+ A L IW+ A DL G DF +L R + L R Sbjct: 1 MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRT 60 Query: 55 VREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100 EK Y F + +L V FY + + N L Sbjct: 61 GTEKDDFDYAQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120 Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146 S I S S+ + K +F+D D +S ++L ++ L K+ + E Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGG 178 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+L++ + S + +F TP++V L T + + + K Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP CG+G L N V G +GQE+ T+ +C M + + Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284 Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + +I G TL+ + F +SNPP+ KW+ D +A+ RF Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334 Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P L S + F +H+ + L + G AAIV L+ G A E +IR++L++ Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 N+ ++A++ LP DLFF T IAT + +L K + ++A+ L+ G K Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440 Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEA 500 ++ +++ILD R++ + F+R++D + ++ + + L + Sbjct: 441 LSTAHQKKILDGLTVRQDIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNS 500 Query: 501 DITWRKLSPLHQSFWLDILKPMMQ 524 DI +D + ++ Sbjct: 501 DIARIVARQAELRKQIDAIVADLE 524 >gi|88854447|ref|ZP_01129114.1| type I restriction-modification system DNA methylase [marine actinobacterium PHSC20C1] gi|88816255|gb|EAR26110.1| type I restriction-modification system DNA methylase [marine actinobacterium PHSC20C1] Length = 522 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 114/557 (20%), Positives = 212/557 (38%), Gaps = 74/557 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAV 55 T A L IW+ A DL G DF +L R + L ++ Sbjct: 4 TTKESQRAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYVNTGERKAGS 63 Query: 56 REK-YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIA-------- 105 + Y + S+ + V+ FY + ++ NL + Sbjct: 64 ADFDYRSLSDSDAEFGRQETVSEKGFYILPSELFVNVQHKAQQDENLNETLHTVFRNIEG 123 Query: 106 -----SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154 D+ K +F D D +S +L ++ L K+ + L D + Sbjct: 124 SAVGTDSEDDLKGLFHDLDVNS--PKLGQTVAKRNEKLVKLLDAIGDLPLGNFDDNTIDL 181 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+L++ + S + ++ TP++V L + + + K +YDP Sbjct: 182 FGDAYEYLMQMYASSAGKSGGEYYTPQEVSELLARITVVGKTEVNK--------VYDPAV 233 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + K +GQE+ T+ + M + + + Sbjct: 234 GSGSLLLKFAKVL------GKENVRQGFYGQEINLTTYNLARINMFLHDVNYEKF----- 282 Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 N+ G TL+ + F +SNPP+ KW+ D + + RF P L Sbjct: 283 NLAHGDTLTDPAHWGDEPFEAIVSNPPYSIKWDGDANPL-----LINDPRFAPAGVLAPK 337 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S + F MH+ + L + G AAIV L+ G A E++IR++L++N+ ++A++ Sbjct: 338 SKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVDAVI 390 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP DLFF T IAT + +L K + V I+A+ + N G + + + + + Sbjct: 391 QLPPDLFFGTTIATCIIVLKKSKVDNS---VLFIDASAEF----NRGGSKNKLAEANQAK 443 Query: 452 ILDIYVSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKT--GLARLEADIT-WRKL 507 ILD + +R + F++++ + + + + L A+I Sbjct: 444 ILDTFTTRVDTAHFAKLVPNANLAENSYNMAVSSYVEQEDTREVVDITELNAEIARIVAR 503 Query: 508 SPLHQSFWLDILKPMMQ 524 ++ +I+ + Sbjct: 504 QAELRTAIDEIVADLEG 520 >gi|238917453|ref|YP_002930970.1| type I restriction enzyme M protein [Eubacterium eligens ATCC 27750] gi|238872813|gb|ACR72523.1| type I restriction enzyme M protein [Eubacterium eligens ATCC 27750] Length = 892 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 106/491 (21%), Positives = 196/491 (39%), Gaps = 70/491 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L +W + + L G +++ IL ++ + + + A + + Sbjct: 1 MAVKKTQLYASLWASCDKLRGGMDSSEYKDYILTLLFMKYVTDKFK-NKGAYEDIKVFDK 59 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSD---NAKAIFEDFD 119 + D + K G SF L N ++ IA +D + K + + Sbjct: 60 AHDKDPDP-EKRTGCSF-----DDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAH 113 Query: 120 FSSTIARLEKA----GLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSE 172 F+ +L L + F EL D ++ + YE+L+R+F +E + Sbjct: 114 FNDE-KKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGK 172 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TP +V + ++ T+ DP CG+G L A++ Sbjct: 173 SKGQFYTPAEVSRILANVV------GISHCTDASATVCDPACGSGSLLIRAIDA------ 220 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 P ++ +GQE E T + ++ R I+ G+T S + Sbjct: 221 ---APFPIMGYGQEKESTTAGLAKMNAVLH-------RKAEIIIKSGNTFSNPQYMDKSD 270 Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLA 343 +RF Y ++NPPF K +D A E GRF G G +P +G +LMH+ Sbjct: 271 NSVLERFDYIVANPPFSMKNWRDGIA------GKEYGRFEGYGDMPPEKNGDYAWLMHIL 324 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ G+AA++L LF G A E+ IR +++ I+ I++LP +LF+ T I Sbjct: 325 KTLKS----NGKAAVILPHGVLFRGNA---EATIRETIIKKHWIKGIISLPANLFYGTGI 377 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461 A + ++ R+G + +I+A+ + +G K R + + +I+ + + + Sbjct: 378 AACVLVIDKEGAANRQG-IFMIDASRGYV---KDGNKNR-LRERDIYRIITTFNEQITTD 432 Query: 462 GKFSRMLDYRT 472 K++R + Sbjct: 433 PKYARFVPNDE 443 >gi|188527305|ref|YP_001909992.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori Shi470] gi|188143545|gb|ACD47962.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori Shi470] Length = 529 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 124/580 (21%), Positives = 211/580 (36%), Gaps = 86/580 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48 M A L N IWK A +L G DF + +L R + + Sbjct: 1 MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60 Query: 49 --EPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 E + E+ + I+ + F F N + + T Sbjct: 61 NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI + G++L Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCHINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ KW + + + RF P Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPI-----LINDERFSPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + + F MH+ + L G AIV L+ G A E++IR L++ + Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTCAIVEFPGVLYRGNA---EAKIREHLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R +IL Y R+ K L + + + L E Sbjct: 443 EHNREKILQTYTERKTIKHFSALAN---------MEKIKENDYNLSVNRFVEQEDTKEII 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q ES +KE + A Sbjct: 494 DIKALN----GEISQIVEKQSALRNSLESIIKELEEGQNA 529 >gi|229542843|ref|ZP_04431903.1| type I restriction-modification system, M subunit [Bacillus coagulans 36D1] gi|229327263|gb|EEN92938.1| type I restriction-modification system, M subunit [Bacillus coagulans 36D1] Length = 854 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 119/567 (20%), Positives = 209/567 (36%), Gaps = 88/567 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-----------AV 55 ++ + +W A +L G + + +L + L T + Sbjct: 3 TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETFKVASGIGQMSELEL 62 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASF--- 107 E Y ++ + +Y + EY T + E + F Sbjct: 63 VEAYTKAKAEYGEMLEQMIQNVLGYYVSPEYLYQTWIKDINSGDFEVQKVIDSLNHFERT 122 Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 SD+ + +F T L E++ + + F+ + + V+ Sbjct: 123 IAVSGDSDDFQGLFSSSTLDLTDTALGSNLNERSKNIKALILLFADLNMV-ALQKGDVLG 181 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F E + A +F TPR V + ++ I+++YDPT G+ Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIVA---------RTSDIKSIYDPTVGS 232 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L H+ L +GQE T+ + +L+ + + I Sbjct: 233 GSLLLTVGKHL-----DEDAQKNLSYYGQEKNTATYNLTRMNLLLHGVRPEKMT-----I 282 Query: 277 QQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 + G TLS+D +F + NPP+ K + RF Sbjct: 283 KNGDTLSQDWPEDPERPNEGVQFDAVVMNPPYSAKN------WNRSGLKVSDPRFEVAGV 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP S G FL+H L G AIVL LF G S E EIR+ LL+ + I Sbjct: 337 LPPDSKGDFAFLLHGLFHL----GQNGTMAIVLPHGVLFRG---SAEGEIRKRLLQKNYI 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 +AI+ LP++LF T I + IL +K + V +I+A+ + + K+ ++ + Sbjct: 390 DAIIGLPSNLFTNTGIPVVVIIL--KKNRKFDDPVLIIDASHSFIKV----GKQNVLQEK 443 Query: 448 QRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL-----ARLEAD 501 +I+D YV R + +S + + P + ++ + A L Sbjct: 444 DIAKIVDTYVERREEEGYSHLATREEIMENEYNMNIPRYI--QANEEEIPHDVDAHLLGG 501 Query: 502 ITWRKLSPLH--QSFWLDILKPMMQQI 526 I + + L QS D+LK +++I Sbjct: 502 IPQKNIDDLKVLQSTVPDVLKRSLKEI 528 >gi|190890487|ref|YP_001977029.1| type I restriction-modification system protein, methyltransferase subunit [Rhizobium etli CIAT 652] gi|190695766|gb|ACE89851.1| probable type I restriction-modification system protein, methyltransferase subunit [Rhizobium etli CIAT 652] Length = 830 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 106/484 (21%), Positives = 190/484 (39%), Gaps = 76/484 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + +W + + L G + + IL ++ + Sbjct: 19 MAIKKSDIYRSLWDSCDQLRGGMDASLYKDYILTLLFVKYVSDR---------------- 62 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFSD--NAKAIFED--F 118 + G SF L L GS + ++ IA ++ + K + + F Sbjct: 63 -AAQADALIEVPKGCSF-----DDLRKLRGSKDIGEGIDKAIAGIAEANDLKNVIDRAFF 116 Query: 119 DFSSTIARLEK-AGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174 + + R EK L + FS EL+ D ++ + YE+L+R F +E + Sbjct: 117 NDAEKFGRGEKMVKTLTALINIFSREELNFSRNRADGDDILGDAYEYLMRNFATESGKSK 176 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V + A+ A + +T+YDPTCG+G L A + Sbjct: 177 GQFYTPAEVSRVVAAV------AGINRANSPRQTVYDPTCGSGSLLLKAADA-------- 222 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289 L +GQE + T + M++ E I QG ++ F Sbjct: 223 -ASVELTIYGQEFDITTRGLAKMNMIMHGRE-------DAEIAQGDVIADPQFRASETAI 274 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + F + ++NPPF K GRF G+P +G FL+H+ ++ Sbjct: 275 QTFDFVVANPPFSTKAWSSGLTANNRF-----GRFDIGMPPEKNGDFAFLLHILASMKAT 329 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 +G A++L LF G E+E+R +L+ ++AI+ LP +LF+ T I + + Sbjct: 330 GSG----AVILPHGVLFRGNK---EAELREKILKRGYVKAIIGLPANLFYGTGIPATIIV 382 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468 L +RR V +I+A+ + +G K R + + +I+D+Y + K +S ++ Sbjct: 383 LDKSGACDRR-PVFMIDASRGFI---KDGNKNR-LRERDIHKIIDVYARQVEIKGYSSLV 437 Query: 469 DYRT 472 Y Sbjct: 438 SYDD 441 >gi|63146889|emb|CAI79472.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp. lactis] Length = 532 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 111/486 (22%), Positives = 191/486 (39%), Gaps = 72/486 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50 M E + + L + ++ A+ L ++ +L + L L Sbjct: 1 MAEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59 Query: 51 -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFS 108 T ++ Y L+ GY Y+ L + N + L +F+ Sbjct: 60 VTLDEAQKIYEENLEEEGLLDEVKDELGYLIEPEYTYT-KILDNANDGSFQLNQLGDAFN 118 Query: 109 D------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSN 157 + + +F+D+D S RL + + + K +EL P + + Sbjct: 119 KLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVIKAIGKLELV--KTPGDTLGD 174 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI +F SE + A +F TP++V L L L D ++YDP G+G Sbjct: 175 AYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSG 228 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + +V + + +GQE+ T + M++ ++ ++ ++ Sbjct: 229 SLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKLR 276 Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333 G TL +D + F + NPP+ KW DK ++ RF G LP S Sbjct: 277 NGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKSK 329 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L+ G AIVL LF G A E +IR+ LLE I+A++ L Sbjct: 330 ADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGL 382 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P +LF+ T I T + +L K + V I+A+ + ++ + + + +IL Sbjct: 383 PANLFYSTGIPTTIVVLKKDKQDR---NVLFIDASKEFEKVKT----QNKLRQEDIDKIL 435 Query: 454 DIYVSR 459 Y R Sbjct: 436 KTYEER 441 >gi|256826762|ref|YP_003150721.1| type I restriction system adenine methylase HsdM [Cryptobacterium curtum DSM 15641] gi|256582905|gb|ACU94039.1| type I restriction system adenine methylase HsdM [Cryptobacterium curtum DSM 15641] Length = 856 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 102/517 (19%), Positives = 192/517 (37%), Gaps = 64/517 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65 + LA+ IW++A + + + + IL F + L + ++ + + Sbjct: 2 NKQQLASKIWESANKMRSTIEASQYKDYILGFIFYKFLSETEVARLKAKDFAESDLPTLT 61 Query: 66 NIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFSDNAKAIFED 117 D E+ V G Y + L + R+ L ++ + S K +FE Sbjct: 62 EDDPETVAFVRGECGYFIAYDDLFQTWIAKGKDFEIADVRDALSAFDRNVSPAHKKVFEK 121 Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I V+ IYE+L+ +F + Sbjct: 122 IFETLQTGLSKLGTDARSQSKAARDLIQLIKDI-PMDGRQDYDVLGYIYEYLLEKFATNA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ + + +YDPT G+G L + VA Sbjct: 181 GKKAGEFYTPHEVSQLISEIVAWHLQSRRQIE------IYDPTSGSGSLLINIGKAVARR 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + P + + QEL+ T+ + +++R + D ++ G TL+ D Sbjct: 235 NGN---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIA-----VRNGDTLADDWPWFD 286 Query: 291 R------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 +SNPP+ + W+ + RF G+ S F Sbjct: 287 TVENKDETYKPLFVDAVVSNPPYSQDWDPVDKEI--------DPRFEYGVAPKSKADYAF 338 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L G IVL LF G E IRR L+E+ I+AI+ LP ++F Sbjct: 339 LLHDLYHLRND----GIMCIVLPHGVLFRGGE---EGLIRRNLVEHRHIQAIIGLPANIF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T I T + +L ++ V +++A+ + K + ++I+D + Sbjct: 392 FGTGIPTIIMVLRKQRAA-GDDNVLVVDASKYFMKE----GKNNKLRASDIKRIVDAVTT 446 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 + FSR + + P + G Sbjct: 447 NTDVDSFSRSVTIDEIRKNDYNLNIPRYVDSSEAPEG 483 >gi|240949222|ref|ZP_04753566.1| type I restriction-modification system [Actinobacillus minor NM305] gi|240296338|gb|EER46982.1| type I restriction-modification system [Actinobacillus minor NM305] Length = 840 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 105/481 (21%), Positives = 179/481 (37%), Gaps = 71/481 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + LA +W +A DL G +++ IL F + L + + Sbjct: 2 NKQQLAATLWASANDLRGKMDASEYKNYILGFLFYKFLS----EHQENYLVQNE-VSFEE 56 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDFDF 120 +D +S + Y ++ L N N + I F++N + DF Sbjct: 57 LDSDSIETIKEDLGYFIAQEDLYRTWIVNISENKWKLSHVTDAINHFNENLYDS-QKDDF 115 Query: 121 SSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + L +K + K+ + +GI++ D V IYE+LI +F Sbjct: 116 EGVFSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKIT-DNSEYDVFGYIYEYLIAQFAM 174 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP V + ++ D +YDPT G+G L V Sbjct: 175 ASGKKAGEFYTPHQVSRIMAEIVADEL------RQKEQCAVYDPTAGSGSLLLTVSEAVN 228 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + GQE T+ + +L+R ++ ++ TL D Sbjct: 229 RN----EHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMI-----LRNADTLKSDWPY 279 Query: 289 GKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFL 339 G+ ++NPP+ KW+ ++ + RF G + FL Sbjct: 280 GEINGEDTPLFVDCVVANPPYSAKWDTERA--------DKDVRFKEYGTAPATKADYAFL 331 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G E +IR LL+ I+AI+ LP +F Sbjct: 332 LHSLYHLKSD----GIMAIVLPHGVLFRGNE---EEKIRTKLLQRRQIDAIIGLPAGIFT 384 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + IL + + V I+A+ + +N ++ + ++ILD+Y R Sbjct: 385 NTGIPTIVMILRK---QPKHNNVLFIDASQGFRKEKNS----NVLRERDIKKILDVYRKR 437 Query: 460 E 460 E Sbjct: 438 E 438 >gi|186701606|ref|ZP_02971313.1| type I restriction-modification system, M subunit family [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700836|gb|EDU19118.1| type I restriction-modification system, M subunit family [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 510 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 109/560 (19%), Positives = 219/560 (39%), Gaps = 64/560 (11%) Query: 1 MTEFTGSA---ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M + +AN +W + ++L G+ + +I+ L+ + +A++E Sbjct: 1 MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKE 60 Query: 58 KYLAFGGSNIDLESFVK---------VAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF 107 KY +I +S + V + +N S ++ + I + Sbjct: 61 KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + K +F S + + L + + F+ + + ++ IYE+ + F Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDF--SQFNEDLVGRIYEYFLGEFF 173 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + +F TP+ VV L +L P +YDP CGTGG A N++ Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + + +GQE + +T + +L+ + + T +DL Sbjct: 224 HEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGS---EDTFKEDLH 277 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 G++F ++NPPF K ++ + E RF G+P ++ + +L+H+ +KL Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKLN 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+A ++L++ L + ES +R+ ++E ++++AI++LP LF+ T I+ + Sbjct: 331 SR----GKAGVILANGSLSSSNKE--ESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 W + K E V I A+ + K R + D +I ++Y E G+ Sbjct: 385 WFFNKNKENE---NVLFIEASKMGELKTK---KLRFLTKDDILKIKNVYDQHEQGE---- 434 Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 D G+ + + + + L E ++ + + L + ++ Sbjct: 435 -DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIKELKEELSVLFDEL 493 Query: 527 YPYGWAESFVKESIKSNEAK 546 KESIK K Sbjct: 494 EDLIPQ---AKESIKKVLEK 510 >gi|307243983|ref|ZP_07526104.1| putative type I restriction-modification system, M subunit [Peptostreptococcus stomatis DSM 17678] gi|306492633|gb|EFM64665.1| putative type I restriction-modification system, M subunit [Peptostreptococcus stomatis DSM 17678] Length = 521 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 104/568 (18%), Positives = 212/568 (37%), Gaps = 70/568 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + S+ +WK+A+ L G + ++ V+L L+ E R + E + Sbjct: 1 MAKKIKKEISMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASYKFEECRRNIIENHG 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113 FY E S + ++++ I + K Sbjct: 61 EKYADMKP----FYTKENVFYLPEESRWSYIIENAKQDDIALKIDTALFTIEKNNPLLKG 116 Query: 114 IFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + +RL L + + I + + ++ +YE+ + +F + Sbjct: 117 ALP----DNYYSRLHIDTSKLASLLDEINRINT--NDKENDIIGRVYEYFLSKFALAEGK 170 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 G +F TP+ +V+L +L D LYDP CG+GG ++ V Sbjct: 171 GKGEFYTPKCIVNLIAEMLEPYDG-----------ILYDPCCGSGGMFVQSVKFVEAHSG 219 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + K + +GQE T + + IR + ++ + +T + D + Sbjct: 220 NKKK---VSIYGQEYTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKA 270 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351 + ++NPPF + ++ + R+ G +P S+ + +++++ +KL + Sbjct: 271 DFIMANPPFN------QKEWRTANELIDDPRWNGYEVPPTSNANYGWILNIVSKL----S 320 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A +L++ L + E +IRR L+EN+L+EAIV LP +LF+ T+I+ LWIL+ Sbjct: 321 QNGVAGFLLANGALSDDGT---ELKIRRQLIENNLVEAIVILPRNLFYTTDISVTLWILN 377 Query: 412 NRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 K + R ++ ++ + + K + D+ R ++ ++Y + Sbjct: 378 KNKKDRVVEQNGQIKRYRNREKEILFMDLRQMGSPYEK---KYIELTDEDRAKVTEVYHN 434 Query: 459 RENGKFSRMLDY-RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 + F + + F Y + F L + +S + Sbjct: 435 WQQENFEKTYENVPEFCYSAL-FDEVKEKGFTLVPSRYIEFINRDENIDFDTKMKSLQSE 493 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545 + + ++ + S KE E Sbjct: 494 LKELLIDEEKSKEDLLSVFKELGYEIEL 521 >gi|254718011|ref|ZP_05179822.1| Type I site-specific deoxyribonuclease HsdM [Brucella sp. 83/13] gi|265982954|ref|ZP_06095689.1| type I restriction-modification system methyltransferase subunit [Brucella sp. 83/13] gi|306839791|ref|ZP_07472592.1| type I restriction-modification system, M subunit [Brucella sp. NF 2653] gi|264661546|gb|EEZ31807.1| type I restriction-modification system methyltransferase subunit [Brucella sp. 83/13] gi|306405146|gb|EFM61424.1| type I restriction-modification system, M subunit [Brucella sp. NF 2653] Length = 518 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 125/546 (22%), Positives = 206/546 (37%), Gaps = 76/546 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52 MT T A+L IW+ A D+ G DF + +L R + E + Sbjct: 1 MT-STQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGVLFYRFISENFASYIEGGDESIK 59 Query: 53 SAVREK---YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNLESYI 104 A I + + F N S L+T +T +ES Sbjct: 60 YAALADSVVTAEIKDDAIKTKGYFIYPSQLFANVAAKARSNEKLNTELAT-IFAAIESSA 118 Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + + I F DF +T RL +K L + K +G++ H D + + Sbjct: 119 NGY-PSEHDIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLDFGHFDAAHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP CG+G Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHKQTSVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H GQE+ T+ + M + + D NIQ Sbjct: 230 SLLLQAKKHFDAHVIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQ 278 Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL + F + K F +SNPP+ KW D RF P L S Sbjct: 279 LGNTLLEPHFGSDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L + GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 334 DFAFVLHALSYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +L+ KT+ Q I+A+ L+ N ++ D QI+ Sbjct: 387 PNLFYGTTIAVNILVLAKNKTDTLT---QFIDASGLFKKETN----NNVLLDSHIEQIMQ 439 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + S+ + R + + R + L + + ++ L+ Sbjct: 440 AFDSKNDVDHFA---------RSVPLERIAGNDYNLSVSSYVEAKDTREAVDIAALNAKL 490 Query: 515 WLDILK 520 + + Sbjct: 491 KTTVAR 496 >gi|262067382|ref|ZP_06026994.1| type I restriction-modification system, M subunit [Fusobacterium periodonticum ATCC 33693] gi|291378945|gb|EFE86463.1| type I restriction-modification system, M subunit [Fusobacterium periodonticum ATCC 33693] Length = 520 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 120/562 (21%), Positives = 215/562 (38%), Gaps = 84/562 (14%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57 M L IW A DL G DF + +L R + L + V Sbjct: 1 MDNKKEQERTELHRTIWAIANDLRGSVDGWDFKQYVLGILFYRYISENLTNYINKGEVEA 60 Query: 58 KYLAFGGSNI-DLESFVKVAGYS-----FYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 F +++ D ++ V F SE ++ + NL + + N Sbjct: 61 GNPDFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLDTIFKNI 120 Query: 112 -------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152 K +F+D D +S +L ++ L + ++L Sbjct: 121 ENSANGTESENDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + S + ++ TP++V L T L L + K +YDP Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281 Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 282 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQI-----LINDSRFSPAGVLA 334 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ Sbjct: 335 PKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP +LF+ T+IAT + ++ KT+ KV I+A+ + + N + + Sbjct: 388 IIQLPDNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNS----NKMTEKHI 440 Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADI 502 I++ + RE+ ++ S ++D Y +I V +S + +E + Sbjct: 441 NDIVEKFTKRESLEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNK 494 Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524 +++ + +I K + + Sbjct: 495 EIQRIVAREEELRKEIDKIIAE 516 >gi|225023393|ref|ZP_03712585.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC 23834] gi|224943871|gb|EEG25080.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC 23834] Length = 513 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 107/490 (21%), Positives = 191/490 (38%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54 MT T A L IWK A+++ G DF + +L R + A Sbjct: 1 MT-ATQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59 Query: 55 VREKYLAFGGSNIDLESFVKV-----AGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108 + I ++ F N +E + +T + + +S S Sbjct: 60 YAAMSDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157 + K +F+ DF +T +RL +K L + K + ++ + + + Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP++V L L + + + K +YDP CG+G Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+K + F +SNPP+ W D RF P L S Sbjct: 279 LGDTLTKPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+IA + +LS K +Q I+A+ + N ++ ++ +I+ Sbjct: 387 PNLFYGTSIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIAEIVK 439 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 440 LFADKADVPH 449 >gi|254303926|ref|ZP_04971284.1| type I site-specific deoxyribonuclease methyltransferase subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324118|gb|EDK89368.1| type I site-specific deoxyribonuclease methyltransferase subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 520 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 119/561 (21%), Positives = 207/561 (36%), Gaps = 82/561 (14%) Query: 1 MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57 M A L IW A L G DF + +L R + L R Sbjct: 1 MDNKKEQERAELHRTIWGIANALRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEFEA 60 Query: 58 KYLAFGGSNIDLESFVKVA------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + F S ++ E + F SE ++ + NL + + N Sbjct: 61 ENTDFDYSLLNDEDAIVAKEDLIRTKGFFILPSELFVNVRKKADKDENLNVTLDTIFKNI 120 Query: 112 -------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152 K +F+D D +S +L ++ L + ++L Sbjct: 121 ENSASGTESESDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + S + ++ TP++V L T L L + K +YDP Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281 Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +I G TL + + F +SNPP+ KWE D + RF P L Sbjct: 282 --DIAHGDTLIEPAHWDDEPFEAIVSNPPYSIKWEGDSSQI-----LINDSRFSPAGVLA 334 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ Sbjct: 335 PKSKADLAFIMHSLSWLAS----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP +LF+ T+IAT + +L K KV I+A+ + + N + + Sbjct: 388 IIQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKHI 440 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADIT 503 I++ + RE+ ++ L Y +I V +S + +E + Sbjct: 441 DDIVEKFTKREDIEYISNL----VEYEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNKE 495 Query: 504 WRKLSPLHQSFWLDILKPMMQ 524 +++ + +I K + + Sbjct: 496 IQRIVTREEELRKEIDKIIAE 516 >gi|68248821|ref|YP_247933.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae 86-028NP] gi|148825522|ref|YP_001290275.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE] gi|229847391|ref|ZP_04467492.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae 7P49H1] gi|68057020|gb|AAX87273.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae 86-028NP] gi|148715682|gb|ABQ97892.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE] gi|229809717|gb|EEP45442.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae 7P49H1] Length = 514 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 185/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N NN +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW + RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDNPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L +G GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFYGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + ++E+ Sbjct: 442 FANKEDVPH 450 >gi|63146883|emb|CAI79466.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp. lactis] Length = 532 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 112/486 (23%), Positives = 191/486 (39%), Gaps = 72/486 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50 M E + + L + ++ A+ L ++ +L + L L Sbjct: 1 MAEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59 Query: 51 -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFS 108 T ++ Y LE GY Y+ L + N + L +F+ Sbjct: 60 VTLDKAQKIYEENLEEEDLLEEVKDELGYLIEPEYTYT-KILDNANDGSFQLNQLGDAFN 118 Query: 109 D------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSN 157 + + +F+D+D S RL + + + K +EL P + + Sbjct: 119 KLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVIKAIGKLELV--KTPGDTLGD 174 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI +F SE + A +F TP++V L L L D ++YDP G+G Sbjct: 175 AYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSG 228 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + +V + + +GQE+ T + M++ ++ ++ ++ Sbjct: 229 SLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKLR 276 Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333 G TL +D + F + NPP+ KW DK ++ RF G LP S Sbjct: 277 NGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKSK 329 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L+ G AIVL LF G A E +IR+ LLE I+A++ L Sbjct: 330 ADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGL 382 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P +LF+ T I T + +L K + V I+A+ + ++ + + + +IL Sbjct: 383 PANLFYSTGIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKIL 435 Query: 454 DIYVSR 459 Y R Sbjct: 436 KTYEER 441 >gi|126175909|ref|YP_001052058.1| type I restriction-modification system, M subunit [Shewanella baltica OS155] gi|125999114|gb|ABN63189.1| type I restriction-modification system, M subunit [Shewanella baltica OS155] Length = 547 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 116/575 (20%), Positives = 202/575 (35%), Gaps = 85/575 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 MT+ L +W A+ L G DF +L F LR L E Sbjct: 1 MTQ--EQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDY 58 Query: 50 -----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--- 101 ++A + +I + + +++ N E Sbjct: 59 PILAKDDKTAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQ 118 Query: 102 ------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 YI SF + K +F + + +S +L ++ L I + S + Sbjct: 119 TLEAGFKYIEEQSFDSSFKGLFSEINLNS--EKLGKSPTDRNKKLCTIIQKISE-GIAEF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + YE+LI F + + A +F TP+ + + + ++ + Sbjct: 176 STDSDILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDK 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + H+ D G +GQE T + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRKHIVDAGGTVGK-----IYGQEKNITTFNLARMNMLLHGVK--- 287 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL D + ++NPPF +W+ + GE Sbjct: 288 --DTEFEIHHGDTLLNDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQ-------GE 338 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L G AI+L LF G A E IR+ Sbjct: 339 DFRFKSHGLAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EQRIRK 391 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL + I+ ++ LP +LFF T I + +L K + INA++ + + + K Sbjct: 392 KLLNDGHIDTVIGLPANLFFSTGIPVCIIVLKKCKKY---DDILFINASEHYEKGKRQNK 448 Query: 440 KRRIINDD--QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 R D+ ++I++ Y R + RR+ + + F L+ + Sbjct: 449 LREGKGDEPNDIKKIVETYQYRSEDER---------YSRRVSMAEIEKNDFNLNISRYVS 499 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 D L+ Q +DI + + + Sbjct: 500 TAKDTVKIDLAK-EQRKLVDIESSITSALIEHNKF 533 >gi|126465661|ref|YP_001040770.1| N-6 DNA methylase [Staphylothermus marinus F1] gi|126014484|gb|ABN69862.1| N-6 DNA methylase [Staphylothermus marinus F1] Length = 572 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 90/515 (17%), Positives = 188/515 (36%), Gaps = 46/515 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGS 65 + L + + K A+ + ++ IL +++ + + +E S Sbjct: 76 TRGDLESILKKAADLIRTRVDYS----FILVLLFYKKISDQWKLEFQRTYKELVEQGYAS 131 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESY---IASFSDNAKAIFEDFDF 120 E + F EY + I ++ + IF++FDF Sbjct: 132 EEAKELARGKYFHQFQIPEEYLWDNIVKHKGELHEYFSKALKKIGELNEELRPIFDNFDF 191 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + E + +L ++ + F + L ++ + YE L+ F ++ + TP Sbjct: 192 HIFASNRENSEILRQLVELFDSVPLI--DTSPDILGDAYEWLLMMFAPTKAKE-GEVFTP 248 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R+V+ L +L P + DP G+GG L + ++ + + L Sbjct: 249 REVIRLLVEIL----------DPKPGYKILDPAAGSGGMLIISYKYIEEKHGREEA-DKL 297 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 GQE +T A+ M I + ++ I+ G +L F + L+NPP Sbjct: 298 YLFGQEANAKTAALAKMNMYIHGI-------ANQKIEVGDSLLYPKFELGEWDIVLANPP 350 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + + ++ + E G ++ + + G+ +V+ Sbjct: 351 WNQDGYNEQVLKKNEKYRLIY---KYGYTPSQTADWAWIQLMLAAAKPQ----GKVGVVI 403 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + LF G E IR ++E DL+E ++ LP LF+ T + I + K +ERR Sbjct: 404 DNGALFRGGR---EKSIRSKIIEEDLVETVILLPEKLFYNTGAPGAIIIFNKNKPQERRN 460 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK 479 K+ INA++ + N ++ ++ +I Y + FSR++ Sbjct: 461 KILFINASNEYEKHPNI-RRLNRLSKQNIEKIAKTYYEYKEIPGFSRIVGLSEIRENNYN 519 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + L ++ + ++ + ++L + + Sbjct: 520 LNVTL---YVTPPIEIEEIDLEKELQELIEIEKQA 551 >gi|325924159|ref|ZP_08185721.1| type I restriction system adenine methylase HsdM [Xanthomonas gardneri ATCC 19865] gi|325545355|gb|EGD16647.1| type I restriction system adenine methylase HsdM [Xanthomonas gardneri ATCC 19865] Length = 519 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 111/486 (22%), Positives = 190/486 (39%), Gaps = 65/486 (13%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREK 58 A+L N IWK A D+ G DF + +L R + Sbjct: 4 AQQRAALQNQIWKIANDVRGAVDGWDFKQYVLGTLFYRFISENFIAYITGGDASVDYAAM 63 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEY--------SLSTLGST--NTRNNLESYIASFS 108 + +K GY Y + + + L + N +E+ + +S Sbjct: 64 ADDDESIEAAKDDAIKTKGYFIYPSQLFVNVAAKANTNERLNTDLANIFKAIEASASGYS 123 Query: 109 DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEH 161 + I F DF +T RL +K L + K + ++ + + YE Sbjct: 124 SE-QDIKGLFADFDTTSNRLGNTVKDKNTRLAAVLKGVAALDFGGFYASHIDLFGDAYEF 182 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + ++ K +YDP CG+G L Sbjct: 183 LISNYAANAGKSGGEFFTPQQVSKLIAQLAMHGQTSINK--------IYDPACGSGSLLL 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I G+T Sbjct: 235 QAKKQFEDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----HIHLGNT 283 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L + F + F +SNPP+ KW +D RF P L S F Sbjct: 284 LIEPHFGDDKPFDAIVSNPPYSVKWIGSEDPT-----LINDDRFAPAGVLAPKSKADFAF 338 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H + L GRAAIV + G A E +IR++L++N+ +E++++L +LF Sbjct: 339 VLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVESVISLAPNLF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T IA + +LS KT+ Q I+A+ L +G ++ D+ ++I+ ++ S Sbjct: 392 YGTTIAVNILVLSKHKTDTAT---QFIDASGLL----KKGTNNNLLLDEHIKEIMAVFGS 444 Query: 459 RENGKF 464 + N + Sbjct: 445 KANVEH 450 >gi|24379344|ref|NP_721299.1| type I restriction-modification system DNA methylase [Streptococcus mutans UA159] gi|24377269|gb|AAN58605.1|AE014930_7 type I restriction-modification system DNA methylase [Streptococcus mutans UA159] Length = 534 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 115/501 (22%), Positives = 196/501 (39%), Gaps = 74/501 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56 + + L IW A+++ G DF + IL R + + Sbjct: 4 NKESQQRQELHQKIWAIADNVRGAVDGWDFKQYILGILFYRFISENMSDYFDRAEHEAGD 63 Query: 57 -----------EKYLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNL 100 E F ++ + F + F N + +L+T + + Sbjct: 64 PDFRYADLSDEEAEEDFKPDTVEEKGFFILPSQLFENIVKTASTNENLNTDLAKIFKKIE 123 Query: 101 ESYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDR 153 ES I S++ K +F+D D +T RL EK L I +G++ + Sbjct: 124 ESAIGKDSEHAIKGLFDDVD--TTSNRLGGSVKEKNKRLSDILTGIAGLDFGTFEENDID 181 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+LI + S + +F TP+ V L L++ + + K +YDPT Sbjct: 182 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLAQLVMVGKEHINK--------VYDPT 233 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L GQE+ + + M + + + + Sbjct: 234 CGSGSLLLQMKKQFETHILEEG------FFGQEINMTNYNLARMNMFLHNINYN-----N 282 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I++G TL +R F +SNPP+ KW D D RF P L Sbjct: 283 FDIRRGDTLLNPQHLYERPFDAIVSNPPYSIKWIGDADPT-----LINDERFAPAGKLAP 337 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F+MH + L GRAAIV + G A E IR++L++N+ +EA+ Sbjct: 338 KSKADFAFIMHSLSHLSNK----GRAAIVCFPGIFYRGGA---EKTIRQYLIDNNFVEAV 390 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI------- 443 +ALP +LF+ T+IATY+ +L+ K E K I+A+ S + K Sbjct: 391 IALPDNLFYGTSIATYILVLAKNKPE---DKTLFIDASSDEKSTVSGKNKFYETVTNGKI 447 Query: 444 INDDQRRQILDIYVSRENGKF 464 +N I++++ ++++ + Sbjct: 448 LNPKNIEAIVELFKNKKDVDY 468 >gi|167761133|ref|ZP_02433260.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704] gi|167661252|gb|EDS05382.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704] Length = 890 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 105/491 (21%), Positives = 194/491 (39%), Gaps = 72/491 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L +W + + L G +++ IL ++ + + + A + + Sbjct: 1 MAVKKTQLYASLWASCDKLRGGMDSSEYKDYILTLLFMKYVTDKFK-NKGAYEDIKVFDK 59 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSD---NAKAIFEDFD 119 + D + K G SF L N ++ IA +D + K + + Sbjct: 60 AHDKDPDP-EKRTGCSF-----DDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAH 113 Query: 120 FSSTIARLEKA----GLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSE 172 F+ +L L + F EL D ++ + YE+L+R+F +E + Sbjct: 114 FNDE-KKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGK 172 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TP +V + ++ T+ DP CG+G L A++ Sbjct: 173 SKGQFYTPAEVSRILANVV------GISRCTDSSATVCDPACGSGSLLIRAIDA------ 220 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 P ++ +GQE E T + ++ R I+ G+T S + Sbjct: 221 ---APIPIMGYGQEKESTTAGLAKMNAVLH-------RKAEITIKSGNTFSNPQYLDKSD 270 Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLA 343 +RF Y ++NPPF K +D E GRF G G P +G +LMH+ Sbjct: 271 NSILERFDYIVANPPFSMKNWRDG--------LKEYGRFEGYGDTPPEKNGDYAWLMHIL 322 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ G+AA++L LF G A E+ IR +++ I+ I++LP +LF+ T I Sbjct: 323 KTLKS----NGKAAVILPHGVLFRGNA---EATIREAIIKKHWIKGIISLPANLFYGTGI 375 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461 A + ++ R+G + +I+A+ + +G K R + + +I+ + + + Sbjct: 376 AACVLVIDKEGAANRQG-IFMIDASRGYV---KDGNKNR-LRERDIYRIITTFNEQITTD 430 Query: 462 GKFSRMLDYRT 472 K++R + Sbjct: 431 PKYARFVPNDE 441 >gi|312867234|ref|ZP_07727444.1| type I restriction-modification system, M subunit [Streptococcus parasanguinis F0405] gi|311097363|gb|EFQ55597.1| type I restriction-modification system, M subunit [Streptococcus parasanguinis F0405] Length = 523 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 68/503 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56 + + L IW A+D+ G DF + IL R + + Sbjct: 3 NKESAERKELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISEHMADYFDRAEHEAGD 62 Query: 57 -----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101 E F ++ + F + F N + L N ++E Sbjct: 63 LEFRYADLSDQEAERDFKPGTVEDKGFFILPSQLFENVVKNASQNENLNEDLANIFQDIE 122 Query: 102 SYIASF--SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHP-DTVPDRVM 155 F D+ K +F++ D S I EK L I + I + Sbjct: 123 KSAIGFKSEDDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDIDAF 182 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + S + +F TP+ V L L++ D I +YDPTCG Sbjct: 183 GDAYEFLISNYASNAGKSGGEFFTPQTVSKLLARLVMVGKD--------KINKVYDPTCG 234 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L D GQE+ + + M + + + + + Sbjct: 235 SGSLLLQMKKQYEDHILEDG------FFGQEINMTNYNLARMNMFLHNINYN-----NFD 283 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I++G TL ++ F +SNPP+ KW D D RF P L S Sbjct: 284 IKRGDTLLNPQHLDEKPFDAIVSNPPYSVKWVGDGDPT-----LINDDRFAPAGKLAPKS 338 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F+MH N L GRAAIV + G A E IR++L++N+ +EA++A Sbjct: 339 KADFAFIMHSLNHLSNR----GRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAVIA 391 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF T+IAT + +L+ K E K I+A+ + N ++ D I Sbjct: 392 LPDNLFFGTSIATTILVLAKNKLE---NKTLFIDASKEFKKETN----NNVLTDSNIDHI 444 Query: 453 LDIYVSRENGKF-SRMLDYRTFG 474 ++++ + + + + ++D G Sbjct: 445 VELFTNYRSEDYKATLVDNEVIG 467 >gi|22299771|ref|NP_683018.1| type I site-specific deoxyribonuclease modification subunit [Thermosynechococcus elongatus BP-1] gi|22295955|dbj|BAC09780.1| type I site-specific deoxyribonuclease modification subunit [Thermosynechococcus elongatus BP-1] Length = 543 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 117/567 (20%), Positives = 200/567 (35%), Gaps = 80/567 (14%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP----------------TRSA 54 L +W A+ L G DF +L F LR L E R + Sbjct: 9 LGKTLWAIADTLRGAMNADDFRDYMLAFLFLRYLSDNYEEAAKRELGSDWPQLREDDRRS 68 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE---------SYI- 104 + +I+ + + EY S++ + E +I Sbjct: 69 PLAVWYEENPDDIEPFENMMRRKVHYVVKPEYLWSSIAEMARTQDAELLHTLQKGFKFIE 128 Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNI 158 SFS + + +F + + S +L K L I + L ++ + Sbjct: 129 NESFSSSFQGLFSEINLDS--DKLGKTYKQRNERLCTIIGRIAE-GLAEFPQERDLLGDA 185 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI +F + + A +F TP+ + + +A++ + +YD CG+G Sbjct: 186 YEYLIGQFAAGSGKKAGEFYTPQPISSILSAIVSLDAQDPANGKREKLGKVYDFACGSGS 245 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + + +GQE T+ + ML+ L+ D I Sbjct: 246 LLLNVGRRM-------GRYGVGKLYGQEKNITTYNLARMNMLLHGLK-----DTEFEIFH 293 Query: 279 GSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLP 329 G +L + F ++NPPF +WE + + E RF GL Sbjct: 294 GDSLLNEWLLLREENPAKKIEFDAVVANPPFSLRWEPGE-------ELAEDFRFKDYGLA 346 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S FL+H + L G AI+L LF G E +IR+ LL + I+ Sbjct: 347 PKSAADFAFLLHGFHFLHKE----GTMAIILPHGVLFRGNV---EEKIRKKLLLDGNIDT 399 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ L +LF+ T I + +L K + V INA +L+ GK++ + + Sbjct: 400 VIGLAPNLFYSTGIPVCILVLKKCK---KFDDVLFINAAELYEK----GKRQNQLLPEHI 452 Query: 450 RQILDIYVSRENGKFSRMLDYRT-FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 +I++ Y R K LD F RR+ + + F L+ T L Sbjct: 453 DKIVETYQFRREVK--EELDNGALFVSRRVSMEEIEKNDFNLNITRYVSTAKSEPEIDLQ 510 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESF 535 +HQ K + + + Sbjct: 511 QVHQELAELTRKIEQARDRHNEFLKEL 537 >gi|332535332|ref|ZP_08411131.1| type I restriction-modification system, DNA-methyltransferase subunit M [Pseudoalteromonas haloplanktis ANT/505] gi|332035245|gb|EGI71752.1| type I restriction-modification system, DNA-methyltransferase subunit M [Pseudoalteromonas haloplanktis ANT/505] Length = 544 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 111/516 (21%), Positives = 190/516 (36%), Gaps = 76/516 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49 MT+ L +W A+ L G F +L LR L E Sbjct: 1 MTQ--EQLKDLGKTLWDIADSLRGAMNADGFRDYMLSLLFLRYLSDNYEAAAQKELGRDY 58 Query: 50 -----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--- 101 ++A + A +++ + + +++ N E Sbjct: 59 PRLTADDKTAQLALWYAENSADVSEFEKQMRRKLHYVIEPHHLWTSIAELARTQNSELLQ 118 Query: 102 ------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148 YI SF+ N K +F + + +S RL ++ L I + S + Sbjct: 119 TLEVGFKYIEEQSFNSNFKGLFSEINLNS--ERLGKTPADRNKKLCSIIQKISE-GIAEF 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + YE LI +F + + A +F TP+ + + + +++ + Sbjct: 176 SADSDILGDAYEFLISKFAAGSGQKAGEFYTPQPISTILSEIVILDSQEPKTGPKKKLNK 235 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + H+ D G +GQE T + ML+ ++ Sbjct: 236 VLDFACGSGSLLLNVRKHIVDAGGSVGK-----IYGQEKNVTTFNLARMNMLLHGIK--- 287 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D +I G TL D +F ++NPPF +W+ + GE Sbjct: 288 --DTEFDIHHGDTLLNDWDMLSEMNPAKKLKFDAIVANPPFSYRWDPSEAQ-------GE 338 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L G AI+L LF G A E IR Sbjct: 339 DFRFKSHGLAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EQRIRT 391 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL + I+ ++ LP +LFF T I + +L K V INA++ + + + Sbjct: 392 KLLNDGHIDTVIGLPANLFFSTGIPVCIIVLKKCKKY---DDVLFINASEHYEKGKRQNT 448 Query: 440 KRRIINDD--QRRQILDIYVSR-ENGKFSRMLDYRT 472 R D+ ++I++ Y R E ++SR + Sbjct: 449 LREGKGDEPNDIKKIVETYQYRSEEERYSRSVSMAE 484 >gi|237742577|ref|ZP_04573058.1| type I restriction-modification system [Fusobacterium sp. 4_1_13] gi|229430225|gb|EEO40437.1| type I restriction-modification system [Fusobacterium sp. 4_1_13] Length = 520 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 119/560 (21%), Positives = 212/560 (37%), Gaps = 83/560 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52 ++ A L IW A DL G DF + +L R + L E Sbjct: 3 SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEFEAGN 62 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA- 111 S L+ + + E ++ G+ F SE ++ + NL + + N Sbjct: 63 SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIE 121 Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 K +F+D D ++ +L ++ L + ++L Sbjct: 122 SSANGTESENDLKGLFDDIDVNN--NKLGGTVAKRNENLVNLINGVGDMKLGDYQENTID 179 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + ++ TP++V L T + L + K +YDP Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDPA 231 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 232 CGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF---- 281 Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 282 -DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLAP 335 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ I Sbjct: 336 KSKADLAFIMHSLSWLAS----NGTAAIVCFPEVMYRSGA---EQKIRKYLIDNNYIDCI 388 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LF+ T+IAT + +L K KV I+A+ + + N + + Sbjct: 389 IQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKHID 441 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADITW 504 I++ + REN ++ L Y +I V +S + +E + Sbjct: 442 DIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNKEI 496 Query: 505 RKLSPLHQSFWLDILKPMMQ 524 ++ + +I K + + Sbjct: 497 ERIVVREEELRKEIDKIIAE 516 >gi|324115001|gb|EGC08966.1| type I restriction-modification system [Escherichia fergusonii B253] Length = 518 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 120/486 (24%), Positives = 192/486 (39%), Gaps = 68/486 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63 A L IW A D+ G DF + +L R + A E Y A Sbjct: 5 QQRAELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEAGDESIHYAALD 64 Query: 64 GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + ++ GY Y S+ + NT + L + + S Sbjct: 65 DSIITDDIKDDAIRTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G+ L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVLKGVEGLNLGNFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A H + +GQE+ T + M + + D +I+ G+T Sbjct: 234 QAKKHFDNHIIEEG------FYGQEINHTTFNLARMNMFLHNINYDK-----FDIRLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFGDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ VQ I+A+ L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTDTS---VQFIDASGLFKKETN----NNILTDGHIEQIMQVFAS 443 Query: 459 RENGKF 464 + + Sbjct: 444 KTDVDH 449 >gi|139438170|ref|ZP_01771723.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC 25986] gi|133776367|gb|EBA40187.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC 25986] Length = 853 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 110/496 (22%), Positives = 188/496 (37%), Gaps = 68/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 + LA+ IW++A + + ++ IL F + L E R R+ S Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSET-EVARLKARDFAEEDLPSL 60 Query: 66 -NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFE 116 D E+ V G Y + + + G +N+ + +FS N K +F+ Sbjct: 61 VEDDEETVEFVKGECGYFIAYENLFSTWVSKGGDFEISNVRDALNAFSRNIDPARKRVFD 120 Query: 117 D-FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 FD + +++L ++ + I V+ IYE+LI F + Sbjct: 121 GIFDTLRTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISNFAAN 179 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP +V L + ++ T+YDPT G+G L + VA Sbjct: 180 AGKKAGEFYTPHEVSMLMSEIVSWHLAGR------ENITIYDPTSGSGSLLINIGKAVAR 233 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 P + + QEL+ T+ + +++R + D + G TL D Sbjct: 234 RNGD---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWF 285 Query: 290 KR------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 +SNPP+ + W+ + + RF G+ S Sbjct: 286 DTVENKDETYDPLFVDAVVSNPPYSQNWDPEDKEL--------DPRFKFGVAPKSKADYA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L G IVL LF G E IR+ L+EN I+AI+ LP ++ Sbjct: 338 FLLHDLYHLRPD----GIMCIVLPHGVLFRGGE---EGTIRKNLVENRHIQAIIGLPANI 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + +L ++ V +++A+ + K + R+I+D Sbjct: 391 FFGTGIPTIVMVLRKQRESS---DVLIVDASKHFVKE----GKNNKLRASDIRRIVDAVT 443 Query: 458 SREN-GKFSRMLDYRT 472 + KFSR++ Sbjct: 444 TGATVDKFSRLVTIDE 459 >gi|315453997|ref|YP_004074267.1| type I restriction-modification system [Helicobacter felis ATCC 49179] gi|315133049|emb|CBY83677.1| type I restriction-modification system [Helicobacter felis ATCC 49179] Length = 557 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 111/490 (22%), Positives = 180/490 (36%), Gaps = 77/490 (15%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 L IW A+ L G DF + +L R L L +A Sbjct: 43 QAKRNELFKTIWGIADKLRGAVDGWDFKQFVLGIIFYRYLSENL----TAYINANERALN 98 Query: 65 SNIDLESFVKV-----------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107 + D + F SE + L +T NL + + Sbjct: 99 PDFDYSALQDAQAKQAKDLLLEEKGFFIPPSELFSNVLKRADTDGNLNTKLNKIFQNIED 158 Query: 108 -------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RV 154 +N + +F D D S +L EK + + K +++ V Sbjct: 159 SSLEGEAQENFRGLFADLDMDS--NKLGNGVKEKNEKIRSLLKAVGAMKIEDYQESGIDV 216 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE L+ + S+ + +F TP++V L L+L + K +YDP C Sbjct: 217 FGDAYEFLMGMYASDAGKSGGEFFTPQEVSELLAKLVLHGQKDINK--------VYDPCC 268 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + GQE+ T+ +C A M + +E + Sbjct: 269 GSGSLLLKFAKILGKENIKQG------FFGQEINLTTYNLCRANMFLHNIEYN-----QF 317 Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 +I G TL + F +SNPP+ KW D D + RF P L Sbjct: 318 DIAHGDTLLNPQLEDFEPFDAIVSNPPYSTKWVGDDDPL-----LINDPRFAPAGVLAPC 372 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + F MH+ + L + G AIV L+ G A E++IR+ L++ + ++ ++ Sbjct: 373 KYADLAFTMHMLSWLSVK----GTCAIVQFPGVLYRGGA---EAKIRQHLIDRNFVDGVI 425 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 AL DLFF TNI T + IL K + +V ++A+ + + + + Sbjct: 426 ALAPDLFFGTNIPTCVLILRKNKPD---DRVLFVDASAEFVRQ----DTKNKLAPSNIAK 478 Query: 452 ILDIYVSREN 461 IL +Y SRE Sbjct: 479 ILKVYESREE 488 >gi|86750172|ref|YP_486668.1| type I restriction-modification system, M subunit [Rhodopseudomonas palustris HaA2] gi|86573200|gb|ABD07757.1| type I restriction-modification system, M subunit [Rhodopseudomonas palustris HaA2] Length = 515 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 115/485 (23%), Positives = 193/485 (39%), Gaps = 62/485 (12%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAF 62 A+L IW A D+ G DF + +L R + A E Y A Sbjct: 4 QEQRAALQRKIWDIANDVRGSVDGWDFKQYVLGTLFYRFISENFAAYIEADDESIDYAAL 63 Query: 63 GGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111 I + +K GY Y S+ ++ + N ++L + +A Sbjct: 64 SDDVITDDIKDDAIKTKGYFIY-PSQLFVNVAKNANINHSLNTDLAHIFAAIESSANGYP 122 Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162 + I F DF +T RL EK L K+ K + ++ + + YE L Sbjct: 123 SEQDIRGLFADFDTTSTRLGHTVSEKNSRLAKVLKRVAELDFGDFHNSQIDLFGDAYEFL 182 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + + + +F TP+ V L L + + K +YDP CG+G L Sbjct: 183 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTQVNK--------IYDPACGSGSLLLQ 234 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A H + GQE+ T+ + M + + D NIQ+G TL Sbjct: 235 AKKHFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQRGDTL 283 Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339 ++ F + F +SNPP+ KW D RF P L S F+ Sbjct: 284 TQPHFQDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAFV 338 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H + L + GRAAIV + A E +IR++L++N+ +E ++AL ++LF+ Sbjct: 339 LHALSYL----SAKGRAAIVCFPGIFYRDGA---EKKIRQYLVDNNYVETVIALASNLFY 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T IA + +L+ KT+ +Q I+A+ + ++ DD ++++I+ + Sbjct: 392 GTTIAVTILVLAKNKTDTA---IQFIDASG--EEFFKKATNTNLMTDDHIARVMEIFDRK 446 Query: 460 ENGKF 464 E+ Sbjct: 447 EDVDH 451 >gi|219669968|ref|YP_002460403.1| type I restriction-modification system, M subunit [Desulfitobacterium hafniense DCB-2] gi|219540228|gb|ACL21967.1| type I restriction-modification system, M subunit [Desulfitobacterium hafniense DCB-2] Length = 525 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 111/562 (19%), Positives = 204/562 (36%), Gaps = 71/562 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVREKYLAF 62 + L N +W +A+ L G +++ +L + L E + V E Sbjct: 1 MSELNNQLWASADILRGKMDASEYKNYLLGLVFYKYLSDQELRAVYEEEQGKVAEYPSRD 60 Query: 63 -----------GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + E K GY S + + ++ +F + Sbjct: 61 EQFSGLLDWYNDDAAGIREIISKKLGYFIEPDSLFYTFRKKAGEYELHISDIQNAFIELG 120 Query: 112 K------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + +F+D D +ST ++ + ++ K I+L V+ + YE+L Sbjct: 121 RQGEHFAGLFDDVDLASTKLGANAQQRNVTITEVIKALDEIDLF--GHDGDVIGDAYEYL 178 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP+ V + + ++ + +YDPT G+G + + Sbjct: 179 IGQFAAGAGKKAGEFYTPQAVSKIISEIVAIGQEET------APFHIYDPTMGSGSLMLN 232 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 V + P + HGQEL T+ + +++ +E ++ G TL Sbjct: 233 IRRFVKN-------PGQVHYHGQELNTTTYNLARMNLILHNVE-----QSQMRLRNGDTL 280 Query: 283 SKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLF 338 +D T + F+ + NPP+ W D + RF G L S F Sbjct: 281 DEDWPTDEPYLFNAVVMNPPYSANWSADGKFLS-------DPRFEQYGKLAPKSKADFSF 333 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L G IVL LF G E IR+ LL+ IEA++ LP ++F Sbjct: 334 LLHGFYHLNEK----GTMGIVLPHGVLFRGA---SEGVIRKTLLDMGAIEAVIGLPANIF 386 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+I T + IL + + V I+A+ + +N + I R+I+D Y Sbjct: 387 YGTSIPTVVLILKKNRAKR---DVLFIDASKAFEKQKN----QNCIRSQDIRKIVDTYKK 439 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R + ++ + DY + P + ++ + + L+ + + Sbjct: 440 RSSSPQYAHLADYDEIVRNDYNLNIPRYVDTFEEEAPIDIVALSKEITDLNLQIKQREAE 499 Query: 518 ILKPMMQQIYPYGWAESFVKES 539 L + Q E Sbjct: 500 FLGMLSQLAITDETKELIEATK 521 >gi|126173066|ref|YP_001049215.1| type I restriction-modification system, M subunit [Shewanella baltica OS155] gi|125996271|gb|ABN60346.1| type I restriction-modification system, M subunit [Shewanella baltica OS155] Length = 515 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 118/485 (24%), Positives = 188/485 (38%), Gaps = 65/485 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59 A L IW A ++ G DF + +L R + E + Sbjct: 5 QQRAELQRQIWAIANEVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDESINYAGMF 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111 E +K GY Y S+ + + N NL + +A+ Sbjct: 65 DDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANANKNENLNTDLAAIFAAIENSANGYD 123 Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHL 162 K I F DF +T RL K L + K +G+ + + + + + YE L Sbjct: 124 SEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLNITQFEDNENDLFGDAYEFL 183 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + + + +F TP+ V L L + ++ K +YDP G+G L Sbjct: 184 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 235 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A H GQEL T+ + M + + D NIQ G TL Sbjct: 236 AKKHFDAHIIEEG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTL 284 Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339 + F + F +SNPP+ KW D RF P L S F+ Sbjct: 285 IEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAFV 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H N L GRAAIV + G A E +IR++L++N+ +E +++L +LFF Sbjct: 340 LHALNYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVISLAPNLFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T IA + +LS KT+ Q I+A++L+ N ++++ QI+ ++ S+ Sbjct: 393 GTTIAVNILVLSKHKTDTTT---QFIDASNLFKKETN----NNTLSNEHIEQIIKVFASK 445 Query: 460 ENGKF 464 EN + Sbjct: 446 ENVEH 450 >gi|317014260|gb|ADU81696.1| type I restriction enzyme M protein [Helicobacter pylori Gambia94/24] Length = 551 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 122/565 (21%), Positives = 208/565 (36%), Gaps = 78/565 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56 + L N IWK A +L G DF + +L R + + + Sbjct: 36 NHASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKLDP 95 Query: 57 ---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107 E+ S I+ + F F N + + T N+ + I Sbjct: 96 NFDYASLSDEEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQNIFTEIEKS 155 Query: 108 S------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157 S +N K +F D D +S + + L KI + G++L V + Sbjct: 156 SLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGD 215 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+L+ + S + ++ TP++V L + L +++ K +YDP CG+G Sbjct: 216 AYEYLMAMYASNAGKSGGEYFTPQEVSELLAKITLHNQESINK--------VYDPCCGSG 267 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + D GQE+ T+ +C M + + +I Sbjct: 268 SLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFHIA 316 Query: 278 QGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDG 334 G TL + F +SNPP+ KW D + + RF L + Sbjct: 317 LGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMN-----DERFNKAGALAPKNAA 371 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + F MH+ + L G AAIV L+ G A E +IR +L++ + I+ ++ALP Sbjct: 372 DLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIALP 424 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF TNIAT + +L K ++ I+A+ + K+ + + R +IL Sbjct: 425 ENLFFGTNIATCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKERNREKILQ 477 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 Y+ R+ K L + + + L E + L+ Sbjct: 478 TYIERKAIKHFAALAN---------IEKIQENDYNLSVNRYVEQEDTKEIIDIKALN--- 525 Query: 515 WLDILKPMMQQIYPYGWAESFVKES 539 +I + + +Q ES +KE Sbjct: 526 -GEISQIVKKQSALRNSLESIIKEL 549 >gi|300313843|ref|YP_003777935.1| Type I restriction-modification system methyltransferase subunit [Herbaspirillum seropedicae SmR1] gi|300076628|gb|ADJ66027.1| Type I restriction-modification system methyltransferase subunit protein [Herbaspirillum seropedicae SmR1] Length = 860 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 107/500 (21%), Positives = 187/500 (37%), Gaps = 72/500 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 + LA IW +A + + ++ IL F + L LE R AV + + Sbjct: 2 NKQQLAAKIWASANQMRSKIEANEYKDYILGFIFYKYLSDKLE--RFAVSQDFSKEDIQG 59 Query: 66 --NIDLESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFS----DNAKAIF 115 D E Y S + LG N+ +++FS N K +F Sbjct: 60 LSEDDEEIVNFFKSNLGYFISYPNLFSTWLALGGDFEVANVRVALSAFSRLIHPNHKRLF 119 Query: 116 EDF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + + +++L ++ + + + I V+ IYE+LI F + Sbjct: 120 DGIFKTLETGLSKLGESAASQTKAISALLQLIKDI-PMDGRQGYDVLGFIYEYLISMFAA 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ +YD T G+G L + +A Sbjct: 179 NAGKKAGEFYTPHEVSVLMSEIIAHHLKDR------KTIQIYDSTSGSGSLLLNIGQAIA 232 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL 286 + QEL+ T+ + +++R + L NI + TL D Sbjct: 233 KHMVD---KDNIKYFAQELKENTYNLTRMNLVMRGI-------LPSNIVTRNADTLEDDW 282 Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + +SNPP+ +KW+ + + RF GL S Sbjct: 283 PYFDDQDPVNSYNPLYLDAVVSNPPYSQKWDPEHKEADPR-----YARF--GLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL+H L+ G AIVL LF G E IR+ L+EN+ +E I+ LP+ Sbjct: 336 YAFLLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGAIRKTLIENNHLETIIGLPS 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 ++FF T I T + +L ++ V +++A+ + K + ++I D+ Sbjct: 389 NIFFGTGIPTIILVLRQKRESS---DVLIVDASKGFAKE----GKNNKLRACDIKKIADV 441 Query: 456 YVSRENGK-FSRMLDYRTFG 474 R N +SR++ Sbjct: 442 VTGRLNVPGYSRLVPKAELQ 461 >gi|302381005|ref|ZP_07269466.1| type I restriction-modification system, M subunit [Finegoldia magna ACS-171-V-Col3] gi|302311226|gb|EFK93246.1| type I restriction-modification system, M subunit [Finegoldia magna ACS-171-V-Col3] Length = 522 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 115/564 (20%), Positives = 202/564 (35%), Gaps = 81/564 (14%) Query: 1 MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-------- 49 M+ L IW A++L G DF IL R + + Sbjct: 1 MSIDNKKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENITNYINTGEI 60 Query: 50 -------PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 E + + F + F N N LE Sbjct: 61 EAGNVDFDFAQMSDEMAEQAREGLVQEKGFFILPSELFCNV---RAKAKDDENLNETLER 117 Query: 103 YIASFSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP- 147 ++AK +F+DFD +S +L ++ L K+ + + L Sbjct: 118 AFRHIEESAKGSESESDFAGLFDDFDVNS--NKLGSTVAKRNEKLCKLLDGVADMNLGDV 175 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + YE+L+ + S + +F TP DV L T L + K Sbjct: 176 KDHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK------- 228 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP CG+G L A + + +GQE+ T+ +C M + + D Sbjct: 229 -VYDPACGSGSLLLKAEKIL------GRDKIRNGFYGQEINITTYNLCRINMFLHDIGFD 281 Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 NI TL + F +SNPP+ KW + + + RF P Sbjct: 282 KF-----NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGNDNPL-----LINDPRFSP 331 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S + F+MH + L G AAIV ++ G A E +IR++L++N Sbjct: 332 AGVLAPKSKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EKKIRKYLIDN 384 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + ++ ++ LP +LFF T+IAT + ++ KT+ K I+AT + N + Sbjct: 385 NFVDCVIQLPPNLFFGTSIATCIMVMKKNKTD---NKTLFIDATKECIKVTN----NNKL 437 Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 D +I++ + +R + FS + Y + + + + ++ + Sbjct: 438 TADNMDKIVECFANRSEIEHFSHLATYDEVEENDYNLSVSTYVEAEDTREKIDIVKLNAE 497 Query: 504 WRKLSPLHQSFWLDILKPMMQQIY 527 +++ Q D + ++ +I Sbjct: 498 IKEIVAREQ-VLRDEIDKIISEIG 520 >gi|15789429|ref|NP_279253.1| RmeM [Halobacterium sp. NRC-1] gi|10579755|gb|AAG18733.1| type I restriction modification enzyme, M subunit [Halobacterium sp. NRC-1] Length = 499 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 128/537 (23%), Positives = 222/537 (41%), Gaps = 58/537 (10%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAF 62 + + L + ++K A+ + TD+ + ILP + + E R + E+Y F Sbjct: 1 MSLTLDELDSHLFKCADIIRDAVDPTDYKEYILPLVFYKAISDEYEQEREEIVEEYGEDF 60 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFD 119 + + + G+ ++ S N + + F + + IF + + Sbjct: 61 ADNANLYDVPIVPEGH------RWNDLRQESENVDEAINNAFTEFTQANPDLSGIF-NAN 113 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F + L K+ ++ S +L D+VP ++ Y L+R F E + F T Sbjct: 114 FMEAGGLTDD--RLIKLVEHLSTYDLDRDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFT 171 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P +V L L+ D D T +DPT G+GG LT+A + + P Sbjct: 172 PPHIVQLCVRLVDDFAD---------GMTFHDPTVGSGGMLTEAAKYYREAQG--GDPSK 220 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295 L GQE+ P+ A+ + + L + I++G +L+ FT +RF Sbjct: 221 LTFTGQEINPDIAAIARMNLSLHTLNGE--------IERGDSLASPGFTDGDDLERFDRV 272 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELP---P 350 L+N PF W KD + ++ + GRF LP+ G F+MH+A +L+ P Sbjct: 273 LANFPFSADWAKD------DLQDDQYGRFDWHTKLPRADRGDYAFIMHIAEQLKEPDCGD 326 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG+AAIV+ LF E R+ +LENDL+EAIV LP +LF +I + + +L Sbjct: 327 ESGGKAAIVIPHGVLFR----KHEQRYRQPMLENDLVEAIVGLPENLFQNNSIPSAILVL 382 Query: 411 SNRKTEERRGKVQLINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 + K +R G+VQ I+A D + + N + + DD I++ + + SR Sbjct: 383 NTDKPADREGEVQFIHAADEAFYEELSN----QNELTDDGLDHIVENFDDWTTEERVSRT 438 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + L + + + E R+L + + + M Sbjct: 439 VGIEEIEENDFNLNIALYVDTTEPEEDIDVNEELAELRELQAEREEIESRMTEHMEA 495 >gi|219850152|ref|YP_002464585.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485] gi|219544411|gb|ACL26149.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485] Length = 537 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 90/492 (18%), Positives = 157/492 (31%), Gaps = 75/492 (15%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 +W+ A L G ++ V+L L+ + A E + + + E Sbjct: 25 EAELWQMANALRGSMDAAEYKHVVLGLIFLKYISDAFEEQHARLEAERAQGADPEDPDEY 84 Query: 72 FVKVAGYSFYNTSEY------------SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 A F+ E ++ L I + + D Sbjct: 85 ---RAVNVFWVPPEARRAHRNARVKQPTIGRLVDDAMAG-----IERDNPALTGVVPKND 136 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + R L ++ I + + V+ + E +F S Sbjct: 137 DRPVLDRQH----LGRLIDLIGTIRVGDEEARAKDVLGRVDEEGRSQFASAEGTQRGALT 192 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHH 234 TPR VV L L + DP CG+ G ++ + + Sbjct: 193 TPRCVVKLPVERL-----------DPYRGRVDDPCCGSAGMFVQSVEFIRAHANGNGNGG 241 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 K + +GQE T + + IR ++ I G T D F + + Sbjct: 242 KTGADISIYGQESNYTTWRLAKMNLAIRGIDG--------QIAHGDTFHNDRFPDLKADF 293 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPF K + + + R+ G+P + + + ++ + + L G Sbjct: 294 ILANPPFNVKDWGGE-------RLRDDKRWKYGVPPVGNANFAWVQRIIHHLAPTGYAGF 346 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI----- 409 A + S N SGE EIR+ ++E DL++ +VALP T I LW Sbjct: 347 VLA---NGSMSSN---RSGEGEIRKHIIEADLVDCMVALPGRRCSATQIPACLWFSARDT 400 Query: 410 -----LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGK 463 + RRG V+ I+A + + + D+ +I D + + Sbjct: 401 SGRGGFGPHPSRNRRGHVRFIDARTMGCMVDRT---HCDLTDEDITKIADTSHAWRGEQE 457 Query: 464 FSRMLDYRTFGY 475 D FG Sbjct: 458 AGDDADVPGFGT 469 >gi|315586486|gb|ADU40867.1| site-specific DNA-methyltransferase (adenine-specific) [Helicobacter pylori 35A] Length = 529 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 123/580 (21%), Positives = 209/580 (36%), Gaps = 86/580 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--- 49 M A L N IWK A +L G DF + +L R + + Sbjct: 1 MENKNTQAPKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60 Query: 50 --PTRSAVR---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 R E+ I + F F N + + + T Sbjct: 61 NRQEREHDLSFDYALLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPNNGDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI + ++L Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKIIQAIGDMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ +W DK+ + RF P Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSIEWVGDKNPI-----LINDERFSPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + F MH+ + L G AAIV L+ G A E++IR +L++ + Sbjct: 337 GVLAPKKTADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R +IL Y R+ K L + + + L E Sbjct: 443 EHNREKILKTYTERKTIKHFSALAS---------MEKIKENDYNLSVNRYVEQEDTKEVI 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q + +KE + A Sbjct: 494 DIKALN----AEISQIVQRQSALRNSLDRIIKELEEGQNA 529 >gi|300741622|ref|ZP_07071643.1| type I restriction-modification system, M subunit [Rothia dentocariosa M567] gi|300380807|gb|EFJ77369.1| type I restriction-modification system, M subunit [Rothia dentocariosa M567] Length = 557 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 114/488 (23%), Positives = 187/488 (38%), Gaps = 72/488 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVRE-----KYLA 61 A L IW+ A DL G DF + +L R + L T Y Sbjct: 43 AELHRTIWRIANDLRGSVDGWDFKQYVLGMMFYRFISENLTEYITYEEQEAGAKGFDYAQ 102 Query: 62 FGGSNIDLESFVKVAGYS-FYNTSEYSLSTLGSTN-TRNNLESYIAS------------- 106 IDL+ ++ F+ + + T NL + Sbjct: 103 INDLEIDLDVVQEIVKERGFFLYPSQLFENVYAQARTDENLNETLEKVFQAVEESTKNTQ 162 Query: 107 FSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP--DRVMSNIY 159 N +F+DFD +S +L ++ LYK+ + + L + + Y Sbjct: 163 SERNFSGLFDDFDVNSK--KLGSSVQDRNKTLYKLMGAVAEMNLETSYRQSANDTFGDAY 220 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+L+ + + + ++ TP++V L + D + +YDP CG+G Sbjct: 221 EYLMGMYAANAGKSGGEYYTPQEVSELLARIATDGK--------TQVGRVYDPACGSGSL 272 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + GQE P T+ +C ML+ + D +I G Sbjct: 273 LLKFAKLLGAENVKE-------FLGQESNPTTYNLCRINMLLHNIPFDKF-----DIAHG 320 Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 TL + F +SNPP+ KWE D + + R+ P L + + Sbjct: 321 DTLIAPQHRHLEPFEAIVSNPPYSTKWEGDSNPL-----LINDDRYAPAGVLAPKAKADL 375 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F MH+ + L G AAIV L+ G A E +IR +LL N+ ++A++ LP D Sbjct: 376 AFTMHMLSSLAED----GTAAIVEFPGVLYRGGA---ERKIREYLLRNNYVDAVIQLPPD 428 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T I T + +L +K R V ++A+ + G K R++ + R +I Sbjct: 429 LFFGTAIGTCIIVL--KKGTRRDTSVLFVDASAEFE---RVGNKNRLL-ESHREKIYQAV 482 Query: 457 VSRENGKF 464 +REN ++ Sbjct: 483 RTRENVQY 490 >gi|295091335|emb|CBK77442.1| type I restriction system adenine methylase (hsdM) [Clostridium cf. saccharolyticum K10] Length = 520 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 114/554 (20%), Positives = 201/554 (36%), Gaps = 71/554 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSAVR 56 T+ L IW A++L G DF +L R + L +A Sbjct: 4 TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYINSGEAAAGN 63 Query: 57 EKYLAFGGSNIDLESFVK---VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + + D E F SE + + NL + + + Sbjct: 64 SDFDFAKMPDEDAEEARDGLVEEKGFFILPSELFCNVRANAANDENLNETLERVFRHIEE 123 Query: 114 -------------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154 +F+D+D +S +L ++ L K+ ++L Sbjct: 124 SAKGSEAENDFAGLFDDYDVNS--NKLGSTVAKRNEKLAKLLNGVGEMKLGDVKDHSIDA 181 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+L+ + S + +F TP DV L T L + K +YDP C Sbjct: 182 FGDAYEYLMMMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYDPAC 233 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L A + + +GQE+ T+ +C M + + D Sbjct: 234 GSGSLLLKAEKIL------GRDAIRNGFYGQEINITTYNLCRINMFLHDVGFDKF----- 282 Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 NI TL + F +SNPP+ KW D + + RF P L Sbjct: 283 NIACEDTLISPQHWDDEPFELIVSNPPYSIKWVGDDNPL-----LINDPRFAPAGVLAPK 337 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S M F+MH + L G AAIV ++ G A E +IR++L++N+ ++ I+ Sbjct: 338 SKADMAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCII 390 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP++LFF T+IAT + ++ K + K I+AT + N + + Sbjct: 391 QLPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATRECVKVTN----NNKLTPENIDH 443 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D + RE + F + Y + + + + ++ + +++ Sbjct: 444 IVDAFAKREEVEHFVHLASYDEVSGNDYNLSVSTYVEAEDTREKIDIVKLNAEIKEIVAR 503 Query: 511 HQSFWLDILKPMMQ 524 Q ++ K + + Sbjct: 504 EQMLRDELDKIIAE 517 >gi|301162152|emb|CBW21697.1| putative type I restriction enzyme methylase [Bacteroides fragilis 638R] Length = 517 Score = 279 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 107/544 (19%), Positives = 209/544 (38%), Gaps = 77/544 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M+E L + +W+ A L G+ +DF L F + L +E ++ + Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIETYANSALDDDE 58 Query: 58 --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + ++ D + ++ ++ S++ N LE + Sbjct: 59 VTFKELWEMTDSDAPELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKRKENVLPMLERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGH--------NRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A + +GQE P T+ + ML+ + R Sbjct: 231 PTCGSGSLLLRAASIGKAAY----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 S I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SSFKIENGDTLEWDAFDDMQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + I+AI Sbjct: 331 KTADYAFILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + +L +K + + I+A+ + ++ + + + Sbjct: 384 IGLPANIFYGTSIPTCILVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPQHIQ 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y R+ + +S + + + P ++ ++ +++ Sbjct: 438 KIVETYRDRKEIEKYSHLATLQEVAENDYNLNIP---RYVDTFEEEEPIDIKAVMAEIAE 494 Query: 510 LHQS 513 L Sbjct: 495 LEAK 498 >gi|210630770|ref|ZP_03296594.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279] gi|210160366|gb|EEA91337.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279] Length = 919 Score = 279 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 110/496 (22%), Positives = 188/496 (37%), Gaps = 68/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 + LA+ IW++A + + ++ IL F + L E R R+ S Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSET-EVARLKARDFAEEDLPSL 60 Query: 66 -NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFE 116 D E+ V G Y + + G +N+ +++FS N K +F+ Sbjct: 61 VEDDEETVEFVKGECGYFIAYDNLFSTWVAKGGDFEISNVRDALSAFSRNIDPARKRVFD 120 Query: 117 D-FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 FD + +++L ++ + I V+ IYE+LI F + Sbjct: 121 GIFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISNFAAN 179 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP +V L + ++ T+YDPT G+G L + VA Sbjct: 180 AGKKAGEFYTPHEVSMLMSEIVSWHLAGR------ENITIYDPTSGSGSLLINIGKAVAR 233 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 P + + QEL+ T+ + +++R + D + G TL D Sbjct: 234 RNGD---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWF 285 Query: 290 KR------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 +SNPP+ + W+ + + RF G+ S Sbjct: 286 DTVENKDETYDPLFVDAVVSNPPYSQNWDPEDKEL--------DPRFKFGVAPKSKADYA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L G IVL LF G E IR+ L+EN I+AI+ LP ++ Sbjct: 338 FLLHDLYHLRPD----GIMCIVLPHGVLFRGGE---EGAIRKNLVENRHIQAIIGLPANI 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + +L ++ V +++A+ + K + R+I+D Sbjct: 391 FFGTGIPTIVMVLRKQRESS---DVLVVDASKHFVKE----GKNNKLRASDIRRIVDAVT 443 Query: 458 SREN-GKFSRMLDYRT 472 + KFSR++ Sbjct: 444 AGATVDKFSRLVTIDE 459 >gi|154487133|ref|ZP_02028540.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis L2-32] gi|154084996|gb|EDN84041.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis L2-32] Length = 853 Score = 279 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 105/495 (21%), Positives = 190/495 (38%), Gaps = 66/495 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLAFGGS 65 + LA+ IW++A + + ++ IL F + L L + + + Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSENELMRLKDTDFTEDDLLLLT 61 Query: 66 NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFED 117 + + V Y S + G+ +N+ +++FS N K +F+ Sbjct: 62 EDNPDIVEGVQDECGYFISYDNLFSTWVKKGNDFEISNVRDALSAFSRNINPARKRVFDG 121 Query: 118 -FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 FD + +++L ++ + I V+ IYE+LI F + Sbjct: 122 IFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDSRQDYDVLGFIYEYLISNFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L VA Sbjct: 181 GKKAGEFYTPSEVSQLMSEIVAWHLQGR------EQIKIYDPTSGSGSLLIHIGQSVARR 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + P ++ + QEL+ T+ + +++R + D + G TL D Sbjct: 235 NGN---PNSIMYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWFD 286 Query: 291 R------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 +SNPP+ + W+ + RF G+ S F Sbjct: 287 TLENKEETYNPLFVDAVVSNPPYSQNWDPTDKEI--------DPRFSYGIAPKSKADYAF 338 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L G IVL LF G E +IR+ L+EN I+AI+ LP ++F Sbjct: 339 LLHDLYHLRAD----GIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGLPANIF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-V 457 F T I T + +L ++ + KV +++A+ + K + ++I+D+ Sbjct: 392 FGTGIPTIVMVLRKKRDD---DKVLIVDASKHFIKD----GKNNKLQASDIKRIVDVVSN 444 Query: 458 SRENGKFSRMLDYRT 472 +R KFSR++ Sbjct: 445 NRTVPKFSRLVSIDE 459 >gi|301300590|ref|ZP_07206784.1| type I restriction-modification system, M subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851807|gb|EFK79497.1| type I restriction-modification system, M subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 529 Score = 279 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 110/481 (22%), Positives = 193/481 (40%), Gaps = 71/481 (14%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRSAVREKYLAF 62 +L + A+ L ++ IL + L + L + E+ Sbjct: 7 TLERSLDSAADVLRSKMDANEYKNYILGTIFYKYLSDSMLYYVAELLEEENVSLEEAQKL 66 Query: 63 GGSNIDLESFVKVAGYSF------YNTSEYSLSTLGS-----TNTRNNLESYIASFSDNA 111 N D + ++ F NT L ++ + + + S I S Sbjct: 67 YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNS-IESQGKEF 125 Query: 112 KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + +F+D+D S RL + + K+ +E+ P+ + N YE+LI++F Sbjct: 126 EGLFDDYDLYSK--RLGNTAQKQSDTISKVLSAIGKLEIV--KTPEDTLGNAYEYLIKQF 181 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 SE + A +F TP+ V L L L D T+YDPT G+G L + + Sbjct: 182 ASESGKKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKY 235 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V + + GQE+ T+ + M++ ++ +++ ++ TL +D Sbjct: 236 V-------EHSERITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDW 283 Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342 + F + NPP+ +KW + + RF LP S FL+H Sbjct: 284 PVEEITNFDTVVMNPPYSQKWSANAGF-------KDDPRFSAYGVLPPKSKADYAFLLHG 336 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L+ G AIVL LF G A E +IR+ LLEN I+A++ LP +LF+ T+ Sbjct: 337 YYHLKHS----GVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTS 389 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 I T + +L K + V I+A+ + ++ + + D+ +IL Y R++ Sbjct: 390 IPTTIVVLKKDKQDR---DVLFIDASKDFRKVKT----QNELRDEDVEKILTTYKERKDI 442 Query: 463 K 463 Sbjct: 443 D 443 >gi|261839335|gb|ACX99100.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 52] Length = 529 Score = 279 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 125/580 (21%), Positives = 212/580 (36%), Gaps = 86/580 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT- 51 M A L N IWK A +L G DF + +L R + + Sbjct: 1 MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60 Query: 52 -RSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 + E+ I+ + F F N + + + T Sbjct: 61 NKEERERDPNFDYALLSDEEAEDAKEGLIEEKGFFIPPSALFCNVLKNARTNDDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI + G++L Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILEAIGGMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ KW D + + RF P Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPI-----LINDERFSPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + + F MH+ + L G AAIV L+ G A E++IR +L++ + Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGHA---EAKIREYLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R +IL Y R+ K L + + + L E Sbjct: 443 EHNREKILKTYTERKIIKHFSALAN---------IEKIKENDYNLSVNRYVEQEDTKEVI 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q ES +KE + A Sbjct: 494 DIKALN----AEISQIVEKQSALRNSLESIIKELEEGQNA 529 >gi|187736397|ref|YP_001878509.1| type I restriction-modification system, M subunit [Akkermansia muciniphila ATCC BAA-835] gi|187426449|gb|ACD05728.1| type I restriction-modification system, M subunit [Akkermansia muciniphila ATCC BAA-835] Length = 853 Score = 279 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 95/488 (19%), Positives = 180/488 (36%), Gaps = 72/488 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 + LA+ IW++A + + ++ IL F + L ++ Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSD----KEVKFLKENDWTDDDL 57 Query: 66 ----NIDLESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFS----DNAKA 113 D E+ + Y S + GS ++ +++FS + K Sbjct: 58 PHVTEDDAETVDYIRSNVGYFISYKHLFSTWIDKGSDFNAADVTEALSAFSRLINPSHKK 117 Query: 114 IFEDF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 +F+ + +++L + + + I V+ IYE+LI F Sbjct: 118 VFDKVFATLETGLSKLGENSGARTKAIRDLLHLIKDI-PMDGRQDYDVLGFIYEYLISNF 176 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + A +F TP +V L + ++ + +YDPT G+G L + Sbjct: 177 AANAGKKAGEFYTPHEVSLLMSEIVAAHLKDRQQIK------IYDPTSGSGSLLINIGKC 230 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 VA + + QEL+ T+ + +++R + + + G TL +D Sbjct: 231 VARYMGGG---DNIKYYAQELKENTYNLTRMNLVMRGILPNNIVT-----RNGDTLEEDW 282 Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + +SNPP+ + W R+ GL Sbjct: 283 PYFDDNDPVNTYDPLYVDAVVSNPPYSQSW--------NPADKESDPRYRFGLAPKGKAD 334 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL+H L+ G IVL LF G E IRR L+E + I+AI+ LP Sbjct: 335 YAFLLHDLYHLKPD----GIMTIVLPHGVLFRGGT---EGAIRRNLVEYNHIDAIIGLPA 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 ++FF T I T + +L K + V +++A+ + + K ++ ++I+D+ Sbjct: 388 NIFFGTGIPTIIMVL---KQKRENTDVLIVDASKGFAKV----GKNNVLRACDIKKIVDV 440 Query: 456 YVSRENGK 463 +R + + Sbjct: 441 VSARADVE 448 >gi|329123773|ref|ZP_08252331.1| type I restriction-modification system DNA-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469260|gb|EGF14731.1| type I restriction-modification system DNA-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 514 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 112/489 (22%), Positives = 185/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 MT A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MTIAMQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N +N +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFNEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L +G GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|217974625|ref|YP_002359376.1| type I restriction-modification system, M subunit [Shewanella baltica OS223] gi|217499760|gb|ACK47953.1| type I restriction-modification system, M subunit [Shewanella baltica OS223] Length = 523 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 117/489 (23%), Positives = 187/489 (38%), Gaps = 69/489 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59 A L IW A D+ G DF + +L R + E Sbjct: 5 QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEAYITGGDESVNYAAMD 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNA-- 111 + + ++ GY F S+ + + + NL + +A+ S N+ Sbjct: 65 DSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLAAIFTAIENSANSYD 123 Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICK-----NFSGIELHPDTVPDRVMSNI 158 K I F DF +T RL K L + K F E + + + Sbjct: 124 SEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGDA 183 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP+ V L L + ++ K +YDP G+G Sbjct: 184 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGS 235 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A H GQEL T+ + M + + D NIQ Sbjct: 236 LLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQL 284 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G TL++ F + F +SNPP+ KW D RF P L S Sbjct: 285 GDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKAD 339 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 340 FAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAP 392 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T IA + +LS KT+ Q I+A+ L+ N ++++ QI+ + Sbjct: 393 NLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNTLSNEHIEQIIKV 445 Query: 456 YVSRENGKF 464 + S+E+ Sbjct: 446 FASKEDVDH 454 >gi|157164462|ref|YP_001466969.1| type I restriction-modification system, M subunit [Campylobacter concisus 13826] gi|112800937|gb|EAT98281.1| type I restriction-modification system, M subunit [Campylobacter concisus 13826] Length = 517 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 116/532 (21%), Positives = 205/532 (38%), Gaps = 66/532 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M+E A L N IW A ++ G DF + +L R + A + Sbjct: 1 MSEEAQRRA-LQNQIWSIANEVRGAVDGWDFKQYVLGTLFYRFISENFTDYIEAGDDSID 59 Query: 59 YLAFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---- 111 Y + G ID E ++ GY Y S+ + + + + NL + + + Sbjct: 60 YASMGDDEIDDEQKKVIIEEKGYFIY-PSQLFKNVVKNASNNANLNTDLDQIFKSIEGSA 118 Query: 112 ------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 + I F DF +T RL +K L + +G++ + + Sbjct: 119 AGFESEQDIKGLFADFDTTSNRLGNSVADKNRRLAAVLNGVAGLDFGDFKDNHIDLFGDA 178 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP++V L + L + +++ K +YDP CG+G Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQNVSKLISELAMHGQESVNK--------IYDPACGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A GQE+ T + M + + +I+ Sbjct: 231 LLLQAKKRFDKHEVEQG------FFGQEINHTTFNLARMNMFLHNIN-----YSKFHIEL 279 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G TL + F +SNPP+ W D RF P L S Sbjct: 280 GDTLLDPKLQDDKPFDAIVSNPPYSINWIGSDDPT-----LINDARFAPAGVLAPKSKAD 334 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F+MH + L + GRAAIV + G A E +IR +L++ + +E I+AL Sbjct: 335 FAFIMHALSYL----SAKGRAAIVSFPGIFYRGGA---EKKIREYLVKENFVETIIALAP 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T+IA + +LS K+E K Q I+A++ + N ++ + ++I++I Sbjct: 388 NLFYGTSIAVNILVLSKHKSE---NKTQFIDASEFFEKRTN----NNVLTSEHIKKIVEI 440 Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 + S+E + +D T + + + + E ++ ++ Sbjct: 441 FASKEEIAHVATSVDNDTIAQNDYNLAVSSYVEPKDTREKIDINELNLQIKE 492 >gi|154507566|ref|ZP_02043208.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC 17982] gi|153797200|gb|EDN79620.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC 17982] Length = 545 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 111/502 (22%), Positives = 185/502 (36%), Gaps = 79/502 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----TRSAVREK----- 58 A L IW+ A DL G DF +L F R + L R A+ + Sbjct: 27 AELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTPE 86 Query: 59 ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIA------ 105 Y + + V F+ + + + NL ++ Sbjct: 87 EAAAFDYATLSNEDAEAARDGIVKEKGFFIRPSDLFGNVRAQAAGDENLNETLSYAFRFI 146 Query: 106 -------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 + + +F+D D +ST +L ++ L KI + L Sbjct: 147 ENSARGSGSESDLRGLFDDVDVNST--KLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQID 204 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + +F TP++V + L LD + +YDP Sbjct: 205 AFGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALDGRSD--------VARVYDPC 256 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L + GQE+ T+ +C M + + + Sbjct: 257 AGSGSLLLKFAKLL-------GPSSSRQYFGQEINLTTYNLCRINMFLHDVNF-----SN 304 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G TL++ + F +SNPP+ KW + + RF P L Sbjct: 305 FDIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVG-----KDDIALINDPRFAPAGVLAP 359 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F MH+ + L G AAIV L+ G A E +IRR+L+EN+ + A+ Sbjct: 360 KSKADLAFTMHMLHWLAED----GTAAIVEFPGVLYRGGA---EGKIRRYLVENNFVHAV 412 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP DLFF T IAT + +L + + V ++A+ EG K R + + ++ Sbjct: 413 IQLPPDLFFGTTIATCIIVLKKARPDHS---VLFVDASAECV---REGNKNR-LTAENQQ 465 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +IL + R+ L Sbjct: 466 RILSLVSERQAVDHVAALVSID 487 >gi|238923778|ref|YP_002937294.1| type I restriction-modification system, M subunit [Eubacterium rectale ATCC 33656] gi|238875453|gb|ACR75160.1| type I restriction-modification system, M subunit [Eubacterium rectale ATCC 33656] Length = 544 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 115/555 (20%), Positives = 209/555 (37%), Gaps = 73/555 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52 + L IW A++L G DF +L R + L E Sbjct: 27 NKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLTAYVNVGEIEAGN 86 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFS 108 + + + E V+ G+ F SE + N LE Sbjct: 87 TDFDYAKMKDADAEEAREGLVQEKGF-FILPSELFCNVRVRAAEDNNLNETLEKVFRHIE 145 Query: 109 DNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 ++AK +F+D+D +S +L ++ L K+ + + L Sbjct: 146 ESAKGSQSENSFAGLFDDYDVNS--NKLGSTVAKRNERLVKLLDGIASMNLGSVKDHDID 203 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + +F TP DV L T L + K +YDP Sbjct: 204 AFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKTVNK--------VYDPA 255 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L A + GQE+ T+ +C M + + D Sbjct: 256 CGSGSLLLKAEKVLGKDSVKIG------FFGQEINITTYNLCRINMFLHDIGFDKF---- 305 Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I+ TL+ + F +SNPP+ KWE D + + RF P L Sbjct: 306 -DIECEDTLTNPQHWDDEPFELIVSNPPYSIKWEGDDNPL-----LINDPRFSPAGVLAP 359 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F+MH + L G AAIV ++ G A E +IR++L++N+ I+ + Sbjct: 360 KSKADLAFIMHSLSWL----AANGTAAIVCFPGIMYRGGA---EKKIRQYLIDNNFIDCV 412 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP++LFF T+IAT + ++ KT+ I+A++ + N + + Sbjct: 413 IQLPSNLFFGTSIATCIMVMKKNKTDNNT---LFIDASNECVKVTN----NNKLTKENID 465 Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I+D++ +R + S + Y + + + + + ++ + +++ Sbjct: 466 RIVDVFSNRTEEEHLSYLASYEEIKEKEYNLSVSTYVEAEDIREKIDIVKLNAEIKEIVA 525 Query: 510 LHQSFWLDILKPMMQ 524 Q +I K + + Sbjct: 526 REQVLRDEIDKIIAE 540 >gi|309972663|gb|ADO95864.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae R2846] Length = 514 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 109/489 (22%), Positives = 182/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N NN +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L + GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T+IA + +LS K + Q I+A+ L+ ++ ++ QIL + Sbjct: 389 NLFYGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNLLEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|60680613|ref|YP_210757.1| putative modification protein of type I restriction-modification system [Bacteroides fragilis NCTC 9343] gi|60492047|emb|CAH06809.1| putative modification protein of type I restriction-modification system [Bacteroides fragilis NCTC 9343] Length = 890 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 111/509 (21%), Positives = 190/509 (37%), Gaps = 87/509 (17%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W++ L G + + +L L+ + Sbjct: 1 MAIKKTQLYSILWESCNILRGSMDASQYKNYVLTMLFLKYISD----------------- 43 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLES---YIASFSDNAKAIFEDFD 119 D + F + F+N + L N ++ IA + I + D Sbjct: 44 KVQSDSDIFFDLPEGCFFN----DIVALKGKPNIGEEIQKKLHVIARANPRLDHIINEAD 99 Query: 120 FSSTIAR---LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEG 173 F + K L + F L D ++ + YE+L++ F +E + Sbjct: 100 FDDSTKLGTGKAKVDTLTSLISVFQRDFLDFSKNRAGDDDLIGDAYEYLMKNFAAESGKK 159 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP +V L L+ D ++YDPTCG+G L + + Sbjct: 160 KGQFYTPAEVSRLMARLIGIHKDNR------PQISIYDPTCGSGSLL------LRAAAEY 207 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 K + GQEL+ T + V M + + ++ G T+ K F Sbjct: 208 TKHRDGVSIFGQELDGATRGMAVMNMYLHGYD-------DPELEVGDTIEKPFFKSTPNQ 260 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFG-----PGLPKISDGSMLFLMHL 342 + F+Y ++NPPF +K ++ E K N GR+G P +P I FL+H+ Sbjct: 261 LETFNYVVANPPFSQKGW-----IKGEIKINDTFGRWGNSDNLPPIPPIGYEDYAFLLHI 315 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 + GR A +L + LF G E +RR ++E I I++LPT+LFF T Sbjct: 316 IKSINSQ----GRGACILPNGVLFRGNE---EEAVRRKIIEKRYIRGIISLPTNLFFGTG 368 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-- 460 I + I+ KT +G + +I+A +T +G K R + + R++ D + + E Sbjct: 369 IPACIVIIDKAKTSTSKG-IFMIDARSGFT---KDGAKNR-LREQDIRRVFDAWEALENL 423 Query: 461 -------NGKFSRMLDYRTFGYRRIKVLR 482 + + + R Y I R Sbjct: 424 EANGNLDDKEETIPHYARFVPYTEITNER 452 >gi|145637382|ref|ZP_01793042.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae PittHH] gi|145269474|gb|EDK09417.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae PittHH] Length = 514 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 111/489 (22%), Positives = 185/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N +N +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L +G GRAAIV + G A E +IR++L++N+ ++A++AL Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|317481426|ref|ZP_07940493.1| N-6 DNA methylase [Bacteroides sp. 4_1_36] gi|316902411|gb|EFV24298.1| N-6 DNA methylase [Bacteroides sp. 4_1_36] Length = 517 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 110/558 (19%), Positives = 211/558 (37%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E L + +W+ A L G+ +DF L F + L +E + Sbjct: 1 MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEAYANNALVDDE 58 Query: 61 ---------AFGGSNIDLESFVKV--AGYSFYNTSEYSLSTL-----GSTNTRNNLESYI 104 + E K G ++ Y S++ N LE + Sbjct: 59 VSFKELWTMEDEDAAELQEELKKQCLEGVGYFIEPTYLFSSVIDRIKKKENILPILERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGHDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIKFGVEASEE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMIGQFAAGAGKKAGEFYTPQEVSQILAEIVSIGHA--------RLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A +GQE P T+ + ML+ ++ Sbjct: 231 PTCGSGSLLLRAAKVGHAVD----------IYGQEKNPTTYNLARMNMLLHGIKF----- 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + I+AI Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + ++ +K + + I+A+ + ++ + + + Sbjct: 384 IGLPANIFYGTSIPTCILVM--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPQHIQ 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y RE + +S + + + P R ++ ++A ++ K Sbjct: 438 KIVETYRDREEIEKYSHLATLQEVADNDYNLNIP-RYVDTFEEEEPIDIKAVMSEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ + ++++ Sbjct: 497 AKRAELDKEIDVYLKELG 514 >gi|329948021|ref|ZP_08294922.1| type I restriction-modification system, M subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328523160|gb|EGF50261.1| type I restriction-modification system, M subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 519 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 107/496 (21%), Positives = 185/496 (37%), Gaps = 76/496 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ T +L IW+ A DL G DF +L F R + E + Sbjct: 1 MSKETE-RDALHRAIWRVANDLRGSVDGWDFKAYVLGFLFYRFIS---ENLTEYINAGER 56 Query: 61 AFGGSNIDLESFVKV----------AGYSFYNTSEYSLSTLGSTNTRN-NLESYIA---- 105 G + D F+ + R+ NL ++ Sbjct: 57 EAGDPDFDYRFLSHADAEGARDGIIEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFK 116 Query: 106 ---------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151 + + +F+D D +ST +L ++ L ++ + ++L Sbjct: 117 SIEASATGTGSESDLRGLFDDVDVNST--KLGRTVAQRNDKLTRLMQAIGDLDLSYGESS 174 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE L+ + S + +F TP+++ + + + ++ +YD Sbjct: 175 IDTFGDAYEFLMTMYASNAGKSGGEFFTPQEISEVLARITVMGKKSVN--------RVYD 226 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L + K GQE+ T+ +C M + + Sbjct: 227 PACGSGSLLLKFAKVL------GKENVRGGFFGQEINLTTYNLCRINMFLHDINF----- 275 Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 +I G TL+ + F +SNPP+ KW D RF P L Sbjct: 276 ADFSIVHGDTLTDPAHWDDEPFEAIVSNPPYSTKWIGKDDPA-----LVNDPRFSPAGVL 330 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F MH+ + L + G AAIV LF G A E++IR++L+EN+ ++ Sbjct: 331 APKSRADLAFTMHMLSWLAVD----GTAAIVEFPGVLFRGAA---EAKIRQYLVENNYVD 383 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 A++ LP DLFF T IAT + +L K + V ++A+ + EG K ++ + Sbjct: 384 AVIQLPPDLFFGTQIATCIIVLKKSKQDNS---VLFVDASKQFV---REGNK-NKLSAEN 436 Query: 449 RRQILDIYVSRENGKF 464 + IL R + Sbjct: 437 QEMILKTLAKRADVDH 452 >gi|160946887|ref|ZP_02094090.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270] gi|158447271|gb|EDP24266.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270] Length = 526 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 124/560 (22%), Positives = 213/560 (38%), Gaps = 77/560 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKY 59 T A L IW A+D+ G DF + IL R + L ++ Sbjct: 8 NNETAQRAELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISENLRDYFDKNEHLAGD 67 Query: 60 LAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNT-RNNLESYI-ASFS--- 108 F ++I + + + F+ + + NL + + FS Sbjct: 68 PNFKYADISDDEAKRDFKSGTIEEKGFFILPSQLFENVVANAKDNENLNTELANIFSDIE 127 Query: 109 ---------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153 D+ K +FED D +T RL EK L I + I Sbjct: 128 KSAIGAESEDDIKGLFEDVD--TTSNRLGGTVAEKNKRLRDILTGIAQINFENFKDNHID 185 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+LI + S + +F TP+ V L +++D + I +YDPT Sbjct: 186 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARIVMDGKE--------KINKVYDPT 237 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L D GQE+ + M + + + + Sbjct: 238 CGSGSLLLQMKKQFDDHIIEEG------FFGQEINMTNFNLARMNMFLHNVNYN-----N 286 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I++G TL L ++ F +SNPP+ KW + D RF P L Sbjct: 287 FSIKRGDTLLNPLHNDEKPFDAIVSNPPYSIKWIGEADPT-----LINDVRFAPAGKLAP 341 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F+MH + L + GRAAIV + A E IR++L++N+ I+ + Sbjct: 342 KSYADYAFIMHSLSYL----SSNGRAAIVCFPGIFYRKGA---ERTIRKYLIDNNFIDCV 394 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LFF T+IAT + +++ KTE KV I+A+ + N I+ + Sbjct: 395 IQLPENLFFGTSIATCVLVIAKNKTE---NKVLFIDASKEFKKETN----NNILEEKNIS 447 Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWR 505 I++ + +R + ++ SR + + + + + E + T + Sbjct: 448 AIVEEFRNRTDKEYFSRYVYRTEIEENDYNLSVSTYVEKEDTREVIDIKVLNKEIEETVK 507 Query: 506 KLSPLHQSFWLDILKPMMQQ 525 K+ L +S +I+K + + Sbjct: 508 KIDEL-RSSINEIVKELEDE 526 >gi|225871247|ref|YP_002747194.1| type I restriction-modification system M protein [Streptococcus equi subsp. equi 4047] gi|225700651|emb|CAW95219.1| type I restriction-modification system M protein [Streptococcus equi subsp. equi 4047] Length = 514 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 107/490 (21%), Positives = 188/490 (38%), Gaps = 65/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52 M+E L IW A+D+ G DF + IL R + + Sbjct: 1 MSE-QAQRQELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISENFKTYIEGGEDFNY 59 Query: 53 SAVREKY--LAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNLESYIA 105 + ++ I + + + F N S +L+T + + +E+ Sbjct: 60 EEIPDEVITPEVKDDAIKTKGYFIMPAQLFSNVVKTARSNDNLNT-ELKDIFDAIEASAM 118 Query: 106 SFSD--NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 ++ + K +F+D D S +L E+ L I + + ++ + + Sbjct: 119 GYASENDIKGLFDDVDTRS--NKLGSTVPERNERLALILEGIASLDFGSFEDNHIDLFGD 176 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + S + +F TP+ V L +++ D K + +YDP CG+G Sbjct: 177 AYEFLISNYASNAGKSGGEFFTPQSVSRLLARIVMLGKDEKNKIN-----KIYDPACGSG 231 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + +GQE+ T+ + M + + D I+ Sbjct: 232 SLLLQAKKQFTEHIIEDG------FYGQEINMTTYNLARMNMFLHNINYDKFS-----IE 280 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 +G+TL + F +SNPP+ KW D RF P L S Sbjct: 281 RGNTLLDPKHGNDKPFDAIVSNPPYSIKWVGSDDPT-----LINDDRFAPAGILAPKSKA 335 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F+MH + L GRAAIV + G A E +IR++L++ + +E ++ LP Sbjct: 336 DFAFIMHSLSYLSNK----GRAAIVTFPGIFYRGGA---EQKIRQYLVDGNFVETVIQLP 388 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +L F T+IAT + IL+ K V I+A+ + N ++ ++ +IL Sbjct: 389 DNLLFGTSIATCILILAKNKP---TTDVLFIDASQQFKKETN----NNVLTEENIEKILK 441 Query: 455 IYVSRENGKF 464 + N ++ Sbjct: 442 SVEHKNNEEY 451 >gi|313123730|ref|YP_004033989.1| hsdm-type i modification subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280293|gb|ADQ61012.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 532 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 110/487 (22%), Positives = 191/487 (39%), Gaps = 74/487 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50 M E + + L + ++ A+ L ++ +L + L L Sbjct: 1 MVEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59 Query: 51 -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107 T ++ Y LE GY EY+ + + + L +F Sbjct: 60 ITLDEAQKIYEESLEEEDLLEEVKDELGYL--IEPEYTYTKILNNANDGSFQLNQLGDAF 117 Query: 108 SD------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMS 156 + + + +F+D+D S RL + + + K +EL P + Sbjct: 118 NKLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVLKAIGKLELV--KTPGDTLG 173 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F SE + A +F TP+++ L L L D ++YDP G+ Sbjct: 174 DAYEYLISQFASESGKKAGEFYTPQEISELLARLTLVGKD------YSSGMSVYDPAMGS 227 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L + +V + + +GQE+ T + M++ ++ ++ + Sbjct: 228 GSLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKL 275 Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKIS 332 + G TL +D + F + NPP+ KW DK ++ RF G LP S Sbjct: 276 RNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKS 328 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+H L+ G AIVL LF G A E +IR+ LLE I+A++ Sbjct: 329 KADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIG 381 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LF+ T I T + +L K + V I+A+ + ++ + + + +I Sbjct: 382 LPANLFYSTGIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKI 434 Query: 453 LDIYVSR 459 L Y R Sbjct: 435 LKTYEER 441 >gi|296119614|ref|ZP_06838172.1| type I restriction-modification system, M subunit [Corynebacterium ammoniagenes DSM 20306] gi|295967497|gb|EFG80764.1| type I restriction-modification system, M subunit [Corynebacterium ammoniagenes DSM 20306] Length = 518 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 116/503 (23%), Positives = 195/503 (38%), Gaps = 73/503 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58 M E A L IW+ A DL G DF +L R + L + + + Sbjct: 1 MKE--AQRAELHKTIWRIANDLRGSVDGWDFKSYVLGLLFYRFISENLTEYLNRLEHEAG 58 Query: 59 -----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNA- 111 Y + + V+ F+ + + T NL + + N Sbjct: 59 ETEFNYAELNDEDAEFGREWTVSDKGFFILPSELFVNVRARAKTDENLNEKLEAVFKNIE 118 Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 K +F+D D +ST RL ++ L K+ + + L Sbjct: 119 GSAVGTDSEDDLKGLFDDLDVNST--RLGNSVAKRNATLVKLLEAIGDLPLGDWSDNTID 176 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V + YE+L+ + S + ++ TP++V L T + + ++ K +YDP Sbjct: 177 VFGDAYEYLMGMYASSAGKSGGEYYTPQEVSELLTRITVVGKTSVNK--------VYDPA 228 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L + K GQE+ T+ + M + + Sbjct: 229 VGSGSLLLKFEKVL------GKGGVRNGYFGQEINLTTYNLARINMFLHNVN-----YAD 277 Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 NI G TL+ + F +SNPP+ KWE D + V R+ P L Sbjct: 278 FNIALGDTLTDPKHWDDEPFEAIVSNPPYSIKWEGDANPV-----LINDPRYSPAGVLAP 332 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F MH+ + L + G AAIV L+ A E +IR++L++N+ I+AI Sbjct: 333 KSKADLAFAMHILSWLAV----NGTAAIVSFPGVLYRAGA---EKKIRKYLIDNNYIDAI 385 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP DLFF T I T + +L K + V I+A++ + G K + ++ + Sbjct: 386 IQLPPDLFFGTTIGTCIMVLKKSKKDNS---VLFIDASEQFV---RSGNK-NKLAEENQA 438 Query: 451 QILDIYVSRENGK-FSRMLDYRT 472 ILD ++ RE+ F+ ++ Sbjct: 439 TILDAFIDREDVDHFAELVPNEE 461 >gi|288929352|ref|ZP_06423197.1| type I restriction-modification system, M subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288329454|gb|EFC68040.1| type I restriction-modification system, M subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 517 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 113/559 (20%), Positives = 216/559 (38%), Gaps = 76/559 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------SA 54 M+E L + +W+ A L G+ +DF L F + L +E Sbjct: 1 MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANEALVDDE 58 Query: 55 VREKYLAFGGSNIDLESFVKV------AGYSFYNTSEYSLSTL-----GSTNTRNNLESY 103 V K L ++ D+ES + ++ + S++ N LE Sbjct: 59 VTFKELWAMENDDDIESLQQEVKTECLENIGYFIEPHFLFSSIIEKIKKKENILPILERS 118 Query: 104 IASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151 + D+ + EDF D +L +K L+ + I+ + Sbjct: 119 LKRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQ 178 Query: 152 DRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + + YE++I +F + + A +F TP++V H+ ++ +R +Y Sbjct: 179 EIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSHILAEIVTLGHA--------RLRNVY 230 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L A N GQE P T+ + ML+ ++ Sbjct: 231 DPTCGSGSLLLRAANIGHAN----------EIFGQEKNPTTYNLARMNMLLHGIKF---- 276 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 277 -SNFRIENGDTLEADAFGDTQFDAVVANPPFSAEWSAAEKFNNDDRFSKI-GR----LAP 330 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389 F++H+ L N GG A V LF G A E IRR+L+E + ++A Sbjct: 331 RKTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDA 383 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP ++F+ T+I T + + +K + + I+A+ + ++ + + Sbjct: 384 IIGLPANIFYGTSIPTCILVF--KKCRKEDENILFIDASKEFEKVKT----QNKLRPQHI 437 Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++I+D Y R+ + +S + + P R ++ ++A + K Sbjct: 438 QKIVDTYRDRKEIEKYSHLATLEEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKEL 496 Query: 509 PLHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 ETKRAELDKEIEVYLKELG 515 >gi|208434761|ref|YP_002266427.1| type I restriction enzyme M protein [Helicobacter pylori G27] gi|208432690|gb|ACI27561.1| type I restriction enzyme M protein [Helicobacter pylori G27] Length = 531 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 117/530 (22%), Positives = 199/530 (37%), Gaps = 70/530 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVR---------- 56 L N IWK A +L G DF + +L R + + + + Sbjct: 23 NELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTDYINKEERKRDPSFDYALL 82 Query: 57 --EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------ 108 E+ I+ + F F N + + S T N+ + I S Sbjct: 83 SDEEAERAREHLIEEKGFFIPPSALFCNALKNAPSNEDLNVTLQNIFTEIEKSSLGTPSE 142 Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIR 164 +N K +F D D +S + + L KI + G++L V + YE+L+ Sbjct: 143 ENVKGLFADLDVNSNKLGSSHKIRVEKLTKILQAIGGMQLGDYLKSGIDVFGDAYEYLMA 202 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S + +F TP++V L + L +++ K +YDP CG+G L Sbjct: 203 MYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLLLQFS 254 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + D GQE+ T+ +C M + + +I G TL Sbjct: 255 KVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YTKFHIALGDTLLD 303 Query: 285 DLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F +SNPP+ KW D + K+ E R L + + F MH+ Sbjct: 304 PKHEDDEPFDAIVSNPPYSTKWVGDNSPLL---KDDERFRKAGVLAPKNAADLAFTMHML 360 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + L G AAIV L+ G A E++IR +L++ ++I+ ++ALP +LFF T+I Sbjct: 361 SYLSNQ----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFFGTSI 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 AT + +L K ++ I+A+ + K+ + R +IL Y+ R+ K Sbjct: 414 ATCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKAHNREKILQTYIERKEVK 466 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 L + + + L E + L+ Sbjct: 467 HFCALAN---------IEKIKENDYNLSVNRYVEQEDTKEAIDIKALNSE 507 >gi|319898180|ref|YP_004136377.1| type i restriction-modification system methyltransferase subunit [Haemophilus influenzae F3031] gi|317433686|emb|CBY82073.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae F3031] Length = 514 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 184/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N +N +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L + GRAAIV + G A E +IR++L++N+ ++A++AL Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|167756438|ref|ZP_02428565.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402] gi|167703846|gb|EDS18425.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402] Length = 516 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 118/531 (22%), Positives = 204/531 (38%), Gaps = 69/531 (12%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------AVREK 58 A L + IWK A ++ G DF + +L R + E Sbjct: 4 AAQRAELQSQIWKIANEVRGSVDGWDFKQYVLGTLFYRFISENFSNYIEGGDDSINYAEL 63 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD-------- 109 + I ++ K GY Y S+ + + NT ++L + +A FS Sbjct: 64 DDSIITKEIKEDAI-KTKGYFIY-PSQLFCNIAKNANTNDSLNTDLAKIFSAIESSASGY 121 Query: 110 ----NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159 + K +F DF +T RL +K L + K G+ + + + Y Sbjct: 122 PSESDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVEGLSFGKFEENQIDLFGDAY 179 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LI + + + +F TP+ V L L + + K +YDP G+G Sbjct: 180 EFLISNYAANAGKSGGEFFTPQSVSKLIAKLAMHGQSTINK--------IYDPAAGSGSL 231 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A + GQE+ T+ + M + + D NI G Sbjct: 232 LLQAKKQFDEHIIEDG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIALG 280 Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 +TL F ++ F +SNPP+ W + D RF P L S Sbjct: 281 NTLLNPQFGDEKPFDAIVSNPPYSIPWIGNSDPT-----LINDVRFAPAGVLAPKSKADF 335 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H + L GRAAIV + G A E +IR++L++N+ +EA+++L + Sbjct: 336 AFVLHALSYLSSR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVEAVISLAPN 388 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LFF T+IA + +LS KTE K Q I+A+ + I+ ++ IL+++ Sbjct: 389 LFFGTSIAVNILVLSKHKTE---TKTQFIDASG--EDYFKKETNNNILTEEHINAILELF 443 Query: 457 VSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 ++++ S+ +D + + + + +E + +K Sbjct: 444 ANKKDIDHVSKSVDNSEISLENYNLSVSTYVEAKDTREVIDIVELNAKIKK 494 >gi|295107662|emb|CBL05205.1| Type I restriction-modification system methyltransferase subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 526 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 114/500 (22%), Positives = 188/500 (37%), Gaps = 74/500 (14%) Query: 1 MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRS 53 M T A L IW A+DL G DF + IL R + L E Sbjct: 1 MANTTKEQQRAELHKTIWSIADDLRGSVDGWDFKQYILCTLFYRFVSENLCTYLAEQEGD 60 Query: 54 AVRE-------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNLESYIA 105 A + + G + + F + F N ++ + T +L ++ Sbjct: 61 ASFDYASMSDDQAEWGRGETVKEKGFFILPSELFCNILKHVDKDGMRLTEDGQDLNELLS 120 Query: 106 SFSDNA-------------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N K +F+D D +S + +E+ L K+ ++ Sbjct: 121 QTFKNIEGSAVGTESEGDLKGLFDDMDVNSAKLGNSVIERNKKLVKLISKIGSLDFGGAF 180 Query: 150 VPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + YE+L+ + S + +F TP++V L + + ++ K Sbjct: 181 QDNSIDAFGDAYEYLMTMYASNAGKSGGEFFTPQEVGELLARIAIGDRKSVNK------- 233 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP CG+GG L + K GQE+ T+ + M + + D Sbjct: 234 -VYDPCCGSGGLLLKFAKIL------GKENVRNGYFGQEINLTTYNLARINMFLHDVNFD 286 Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +I G TL + + F +SNPP+ KWE + + RF P Sbjct: 287 KF-----DIALGDTLKEPAHWDDEPFDAIVSNPPYSIKWEGKANPLNIN-----DARFSP 336 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S + F MH+ + L G AAIV L+ G A E +IR +L+ N Sbjct: 337 AGVLAPASKADLAFTMHMLSWLSTE----GTAAIVEFPGVLYRGGA---EGKIRDYLVRN 389 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + +EA++ LP DLFF T IAT + +L KT V I+A++ + + + + Sbjct: 390 NFVEAVIQLPADLFFGTTIATCIIVLKKNKTAS---DVLFIDASEQFERRDS----KNKL 442 Query: 445 NDDQRRQILDIYVSRENGKF 464 +I+ SRE + Sbjct: 443 MPANIERIMAAVSSREEEEH 462 >gi|319775915|ref|YP_004138403.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae F3047] gi|317450506|emb|CBY86723.1| Putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae F3047] Length = 514 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 183/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N +N +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFNEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L + GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|300813147|ref|ZP_07093523.1| type I restriction-modification system, M subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495862|gb|EFK31008.1| type I restriction-modification system, M subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 532 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 112/486 (23%), Positives = 190/486 (39%), Gaps = 72/486 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50 M E + L + ++ A+ L ++ +L + L L Sbjct: 1 MAEENSKVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59 Query: 51 -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFS 108 T ++ Y LE GY Y+ L + N + L +F+ Sbjct: 60 ITLDEAQKIYEESLEEEDLLEEVKDELGYLIEPEYTYT-KILDNANDGSFQLNQLGDAFN 118 Query: 109 D------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSN 157 + + +F+D+D S RL + + + K +EL P + + Sbjct: 119 KLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVLKAIGKLELV--KTPGDTLGD 174 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI +F SE + A +F TP++V L L L D ++YDP G+G Sbjct: 175 AYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSG 228 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + +V + + +GQE+ T + M++ ++ ++ ++ Sbjct: 229 SLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKLR 276 Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333 G TL +D + F + NPP+ KW DK ++ RF G LP S Sbjct: 277 NGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKSK 329 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L+ G AIVL LF G A E +IR+ LLE I+A++ L Sbjct: 330 ADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGL 382 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P +LF+ T I T + +L K + V I+A+ + ++ + + + +IL Sbjct: 383 PANLFYSTGIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKIL 435 Query: 454 DIYVSR 459 Y R Sbjct: 436 KTYEER 441 >gi|77543208|gb|ABA87020.1| methylation subunit [Vibrio cholerae] gi|259156470|gb|ACV96414.1| type I restriction-modification system, M subunit [Vibrio cholerae Mex1] Length = 524 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 119/494 (24%), Positives = 187/494 (37%), Gaps = 69/494 (13%) Query: 1 MTEFTGSAA----SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------P 50 MT+ SAA L IW A D+ G DF + +L R + Sbjct: 1 MTQLQQSAAQQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGD 60 Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 E +K GY Y S+ + + + NL + +A+ Sbjct: 61 ESVNYAAMSDDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANAHKNENLNTDLAAIFAA 119 Query: 111 A----------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 K I F DF +T RL K L + K +G+ + Sbjct: 120 IENSANGYDSEKDIKGLFADFDTTSNRLGNTVEAKNKRLTAVLKGVAGLTFGNFEDNQID 179 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + + YE LI + + + +F TP+ V L L + ++ K +YDP Sbjct: 180 LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPA 231 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L A H GQEL T+ + M + + D Sbjct: 232 AGSGSLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF---- 281 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 NIQ G TL++ F + F +SNPP+ KW D RF P L Sbjct: 282 -NIQLGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAP 335 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F++H + L GRAAIV + G A E +IR++L++N+ +E + Sbjct: 336 KSKADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETV 388 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 ++L +LFF T IA + +LS KT+ Q I+A+ L+ N ++ + Sbjct: 389 ISLAPNLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNVLTEQHIE 441 Query: 451 QILDIYVSRENGKF 464 I+ ++ S+EN + Sbjct: 442 DIMKVFASKENVEH 455 >gi|319428170|gb|ADV56244.1| type I restriction-modification system, M subunit [Shewanella putrefaciens 200] Length = 523 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 114/490 (23%), Positives = 181/490 (36%), Gaps = 71/490 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59 A L IW A D+ G DF + +L R + E Sbjct: 5 QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDESVNYTAMD 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----------ASFS 108 + + ++ GY F S+ + + + NL + + + Sbjct: 65 DSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLATIFAAIENSANGYD 123 Query: 109 DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICK-----NFSGIELHPDTVPDRVMSN 157 K I F DF +T RL K L + K F E + + + Sbjct: 124 SE-KDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGD 182 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP G+G Sbjct: 183 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSG 234 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H GQEL T+ + M + + D NIQ Sbjct: 235 SLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQ 283 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL + F + F +SNPP+ W D RF P L S Sbjct: 284 LGDTLIEPHFLDDKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 338 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 339 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVISLA 391 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T IA + +LS KT+ Q I+A+ L+ N ++++ QI+ Sbjct: 392 PNLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNTLSNEHIEQIVK 444 Query: 455 IYVSRENGKF 464 ++ S+EN Sbjct: 445 VFASKENVDH 454 >gi|260582434|ref|ZP_05850226.1| type I restriction-modification system, M subunit [Haemophilus influenzae NT127] gi|260094585|gb|EEW78481.1| type I restriction-modification system, M subunit [Haemophilus influenzae NT127] Length = 514 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 119/489 (24%), Positives = 191/489 (39%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTNYIEADDESVN 60 Query: 59 YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS------ 108 Y I E +K GY Y S+ + + + NT NL + + FS Sbjct: 61 YAKLPDEIITPEIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNTELKQIFSDIENSA 119 Query: 109 ---DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 + + I F DF +T RL +K L + K + ++ + + Sbjct: 120 TGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFGDFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP+ V L L L D + K +YDP G+G Sbjct: 180 YEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L +G GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFYGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|317178792|dbj|BAJ56580.1| Type I restriction enzyme M protein [Helicobacter pylori F30] Length = 529 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 125/580 (21%), Positives = 210/580 (36%), Gaps = 86/580 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------ 46 M A L N IWK A +L G DF + +L R + Sbjct: 1 MENKNTQAPKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYI 60 Query: 47 -----ALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L P E+ + I + F F N + + T Sbjct: 61 NKQERELNPGFDYASLSDEEAESAKEGLIVEKGFFIPPSALFCNVLKNVPNNGDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI + G++L Sbjct: 121 NIFNEIEKSSLGFESEENLKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ KW D + + RF P Sbjct: 284 --YSKFHIALGDTLLDPKHKDDEPFDAIVSNPPYSTKWAGDNNPI-----LINDERFSPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + + F MH+ + L G AAIV L+ G A E++IR +L++ + Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGHA---EAKIREYLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R +IL Y R+ K L + + + L E Sbjct: 443 EHNREKILKTYTERKAIKHFSALAS---------IEKIKENDYNLSVNRFVEQEDTKEII 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q + +KE + A Sbjct: 494 DIKALN----SEISQIVQKQSALRNSLDRIIKELEEGQNA 529 >gi|332289039|ref|YP_004419891.1| N-6 DNA Methylase [Gallibacterium anatis UMN179] gi|330431935|gb|AEC16994.1| N-6 DNA Methylase [Gallibacterium anatis UMN179] Length = 511 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 117/489 (23%), Positives = 193/489 (39%), Gaps = 67/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + L IW+ A D+ G DF + +L R + + Y Sbjct: 1 MT-SAQQRSELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFASFFNDEETNYA 59 Query: 61 AFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS-------- 108 I E +KV GY Y S+ ++ + + N+ +L + + F+ Sbjct: 60 DLTDDVITNEIKDDVIKVKGYFIY-PSQLFVNIVKNANSNEHLNTDLKNIFNEIEDSAVG 118 Query: 109 ----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158 + K +F DF +T RL +K L + K + ++ H + + + Sbjct: 119 YPSEPDIKGLFA--DFDTTSNRLGNTVADKNKRLAAVLKGVAELDFGHFEDNQIDLFGDA 176 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP++V L L L + K +YDP CG+G Sbjct: 177 YEFLISNYAANAGKSGGEFFTPQNVSKLIARLALHGQSTVNK--------IYDPACGSGS 228 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A GQE+ T+ + M + + D NI Sbjct: 229 LLLQAKKQFDAHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNISL 277 Query: 279 GSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G TL F + K F +SNPP+ KW D RF L S Sbjct: 278 GDTLLNPQFGSDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFASAGVLAPKSKAD 332 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L + GRAAIV + G A E +IR++L++N+ IE ++AL Sbjct: 333 FAFILHTLSYL----SAKGRAAIVTFPGIFYRGGA---EQKIRKYLVDNNFIETVIALAP 385 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS KT+ Q I+A +L+ N ++ D+ +I+ + Sbjct: 386 NLFFGTSIAVNILVLSKHKTDMMT---QFIDAGELFKKETN----NNVLTDEHITKIIQL 438 Query: 456 YVSRENGKF 464 + + + Sbjct: 439 FSEKTDVPH 447 >gi|229606285|ref|YP_002876933.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] gi|229607599|ref|YP_002878247.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] gi|229607706|ref|YP_002878354.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] gi|229608128|ref|YP_002878776.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] gi|229368940|gb|ACQ59363.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] gi|229370254|gb|ACQ60677.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] gi|229370361|gb|ACQ60784.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] gi|229370783|gb|ACQ61206.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae MJ-1236] Length = 530 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 198/568 (34%), Gaps = 66/568 (11%) Query: 1 MTEFTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M + + + +F +W A L G + +++ ++L L+ + E R + + Sbjct: 6 MAKKPAAKKNEKSFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLID 65 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDN 110 L + FY S +S + +++ I + Sbjct: 66 AGLEKHIDMVPA----YTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKA 121 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + D FS + K L + N + + V+ +YE+ + +F Sbjct: 122 LQGALPDNYFSRLGLDVSKLAALIDVINNIDTLANPHE----DVVGRVYEYFLSKFAIAE 177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +G +F TP+ +V+L L+ +YDP CG+GG +M + + Sbjct: 178 GKGKGEFYTPKSIVNLIAELI-----------EPYKGKIYDPCCGSGGMFVQSMKFIENH 226 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + + +GQE T+ + + IR + ++ T + D Sbjct: 227 KGN---KKDISVYGQEYTGATYKLAKMNLAIRGISANLGAAAK------DTFANDQHETL 277 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + ++NPPF +K + D + +H+ G P S+ + +++H+ +KL Sbjct: 278 KADFIMANPPFNQKDWRASDELVDDHRWD-----GYETPPTSNANYGWILHMVSKL---- 328 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 + G A +LS+ L E EIR+ L+EN+L+EAI+ LP ++F+ T+I+ LWIL Sbjct: 329 SENGVAGFILSNGALSGDGT---EKEIRKKLIENNLVEAIILLPRNMFYTTDISVTLWIL 385 Query: 411 SNRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + K +R ++ ++ K ++ +++ D Sbjct: 386 NKNKKAHTVPHEDVTRNYRDREEEILFMDLRQRGEPFEK---KFIQFSEQDIKELADTLH 442 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 + + + L + + Sbjct: 443 TWQQVGAEDKYKDIAEYCYSATKEEIATKDYSLVPSKYIEFTNRDENINFDEKMSNLKEQ 502 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545 + + Q+ + KE + Sbjct: 503 FSQLLAQEEKSKNELLNVFKELGYEIKL 530 >gi|323344377|ref|ZP_08084602.1| type I restriction-modification system [Prevotella oralis ATCC 33269] gi|323094504|gb|EFZ37080.1| type I restriction-modification system [Prevotella oralis ATCC 33269] Length = 542 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 120/588 (20%), Positives = 204/588 (34%), Gaps = 96/588 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAF 62 T + L +W A L G DF +L F L+ L E + + Y Sbjct: 2 TTENKNELGKTLWDIANSLRGAMMADDFRDYMLSFLFLKYLSDNYVEFAKKELGTDYPDI 61 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLS----------------TLGSTNTRNNLE----- 101 + VK +Y + + N N Sbjct: 62 KNIVKEETGIVKSPLQIWYAANPEDIDLFEAQMRKKIHYVIKPKYLWDNIAENARTQSNE 121 Query: 102 ---------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145 YI SF + K +F + + +S +L E+ LL K+ Sbjct: 122 LLKILEEGFKYIEEQSFETSFKGLFSEINLNS--EKLGKNYAERNALLAKVINKIKEGVS 179 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 +T + + YE+LI +F + + A +F TP+ + + + ++ Sbjct: 180 KLNTTT-DTLGDAYEYLIGQFAANSGQKAGEFYTPQGISSILSKIVTLDCQDPKSGKKKK 238 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 I + D TCG+G L + I +GQE T+ + ML+ Sbjct: 239 ISKVLDFTCGSGSLLLNVR-------HEMGANGIGKIYGQEKNITTYNLARMNMLLH--- 288 Query: 266 SDPRRDLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 +D I G TL D F ++NPPF +WE + + Sbjct: 289 --EVKDTEFEIHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEPKE-------E 339 Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + RF GL S FL+H + L +G G AI+L LF G E Sbjct: 340 TAKDFRFSRYGLAPKSAADFAFLLHGFHYL----SGDGTMAIILPHGVLFRGGK---EET 392 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR+ LL +D I+A++ LP +LF+ T I + +L K R + INA+ + Sbjct: 393 IRKKLLSDDNIDAVIGLPANLFYSTGIPVCILVL---KKCRRTDDILFINASSEEHYEK- 448 Query: 437 EGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 GK++ + + +I++ Y R E +++ R++ + + L+ + Sbjct: 449 -GKRQNSLRPEDINKIVETYQFRIEENRYA----------RKVYMREIKDNGYNLNISRY 497 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 L + L+ +H+ K + F+KE Sbjct: 498 VNLSKEEEKIDLAEVHRQLVATEEKIEEARQKH----NEFLKELGLDL 541 >gi|148827354|ref|YP_001292107.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae PittGG] gi|148718596|gb|ABQ99723.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae PittGG] Length = 514 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 109/489 (22%), Positives = 184/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N +N +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNLAANAGSNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L + GRAAIV + G A E +IR++L++N+ ++A++AL Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +++ Sbjct: 442 FADKQDVPH 450 >gi|241895015|ref|ZP_04782311.1| possible site-specific DNA-methyltransferase (adenine-specific) [Weissella paramesenteroides ATCC 33313] gi|241871733|gb|EER75484.1| possible site-specific DNA-methyltransferase (adenine-specific) [Weissella paramesenteroides ATCC 33313] Length = 533 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 101/478 (21%), Positives = 180/478 (37%), Gaps = 70/478 (14%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGG 64 IWK + G + +++ I + L + T V ++ Sbjct: 10 LIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQSWLNTQLRGETWENVWQQNPEKAA 69 Query: 65 SNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------AIF 115 S + + +V G F S++ + N+ + F+ + IF Sbjct: 70 SFMQSKLGYVIQPGDMF---SDWQAAINIDQFNITNVADSLTHFNQGIQQGAKGTFEGIF 126 Query: 116 EDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 +D D +S +RL + S I+ V+ ++YE+LI F + Sbjct: 127 DDMDLAS--SRLGSNTQTRTKTLMDWISLIDQIELDESSDVLGDLYEYLIGMFAANSGAK 184 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TP +V + +L + + + +LYDP G+G L +++ + Sbjct: 185 AGEFYTPHEVSDIMARILTAGREDMAE------YSLYDPALGSGSLLLTTASYMH----N 234 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 + + +GQE+ T+ + +++ +E + +I TL+ D G Sbjct: 235 DGVRGAIKYYGQEVITTTYNLARINLMMHGVEYNDI-----HIHNADTLNMDWPDGVVEG 289 Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + F ++NPP+ KW + RF G+ S FL H Sbjct: 290 VDSPRMFDAVMANPPYSLKW--------DNTNREDDPRFKSGIAPKSKADFAFLQHCLYH 341 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GR AIVL LF G A E IR+ LLEN I A++ LP +F T I T Sbjct: 342 LKQD----GRMAIVLPHGVLFRGAA---EGRIRKQLLENHNISAVIGLPEKIFTNTGIPT 394 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + +L +T V I+A+ + +N + I++ ++ RE+ Sbjct: 395 IIMVLEKNRTS---DDVLFIDASKGFEKQKN----NNKLRAQDIDLIVETFLKREDAD 445 >gi|307637539|gb|ADN79989.1| typeI restriction-modification system DNA-methyltransferase subunit M [Helicobacter pylori 908] gi|325996129|gb|ADZ51534.1| Type I restriction-modification system/DNA-methyltransferase subunit M [Helicobacter pylori 2018] Length = 581 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 122/567 (21%), Positives = 206/567 (36%), Gaps = 80/567 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56 + L N IWK A +L G DF + +L R + + + Sbjct: 64 NHASLERNELHNTIWKVANELRGSVDGWDFKQYVLGVLFYRYISENIARYHNEYMRNNNF 123 Query: 57 -----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105 E+ S I+ + F F N + + + T N+ + I Sbjct: 124 DPSFDYASLSDEEAEIERKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFTEIE 183 Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155 S +N K +F D D +S + + L KI + G++L V Sbjct: 184 KSSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVF 243 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+L+ + S + ++ TP++V L + L + + K +YDP CG Sbjct: 244 GDAYEYLMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCG 295 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + D GQE+ T+ +C M + + + Sbjct: 296 SGSLLLQFSKVLGDKNVLKG------YFGQEINLTTYNLCHINMFLHDIN-----YSKFH 344 Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL + F +SNPP+ KW D + + RF L + Sbjct: 345 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMN-----DERFSKAGALAPKN 399 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F MH+ + L G AAIV L+ G A E +IR +L++ + I+ ++A Sbjct: 400 AADLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIA 452 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF TNIAT + +L K ++ I+A+ + K+ + R +I Sbjct: 453 LPENLFFGTNIATCILVLKRNKKDDTT---LFIDASKEFVKE----GKKNKLKAHNREKI 505 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 L Y R+ K L + + + L E + L Sbjct: 506 LQTYTERKAIKHFSALAN---------IEKIQENDYNLSVNRYVEQEDTKEIIDIKAL-- 554 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539 ++I + + +Q ES +KE Sbjct: 555 --QIEISQIVKKQSALRNSLESIIKEL 579 >gi|172040945|ref|YP_001800659.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] gi|171852249|emb|CAQ05225.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] Length = 865 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 115/589 (19%), Positives = 225/589 (38%), Gaps = 67/589 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----PTRSAVREKYLAF 62 + LA+ IW++A ++ + ++ IL F + L +E + + A Sbjct: 2 NKQELASRIWESANNMRSKIEANEYKDYILGFIFYKFLSDQVEQFMLDNDAEPEDLPDAL 61 Query: 63 GGSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNA----KAIFE 116 ++ D + V+ F Y + G+ + ++ +A+F N K +F+ Sbjct: 62 VETDTDTVALVRNNLGYFLTYENLYSTWRDKGNDFSIAHVREGLATFKRNIAPERKHVFD 121 Query: 117 DF--DFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 +++++L + K+ I V+ IYE+LI +F + Sbjct: 122 GILNTLDTSLSKLGTTDAARTAAIKKLLDLIDDIPTDGKQGY-DVLGYIYEYLIEKFAAN 180 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP +V + + ++ D + +YDPT G+G L + VA Sbjct: 181 AGKKAGEFYTPHEVSLVMSNIVADHLKGRDEIQ------IYDPTSGSGSLLLNIGQAVAK 234 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286 P + QEL T+ + +++R +++D + G +L+ D Sbjct: 235 RMGD---PDRIKYFAQELRENTYNLTRMNLVMRGVKADNIVA-----RNGDSLAHDWPMF 286 Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSML 337 + +SNPP+ +KWE + NG RF L + Sbjct: 287 DESDPVQTYQPLYVDAVVSNPPYSQKWEPEG--------NGADPRFARFALAPKTKADYA 338 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H ++ G IVL LF G E++IRR L+E + I+A++ LP+++ Sbjct: 339 FLLHELFHVKPD----GILTIVLPHGVLFRGG---SEADIRRNLIEANHIDAVIGLPSNI 391 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T IAT + +L K E R V I+A+ + +G K + ++I+D Sbjct: 392 FYGTGIATIIMVL---KQERDRDDVLFIDASQGFI---KQG-KYNHLRARDIQRIVDAVH 444 Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 +R + F++++ + P +S L + S + Sbjct: 445 NRVDVPHFAKVVTRDEIRANDHNLNIPRYVSATLPPEAVDLYATMHGGIPTSEISTLEHY 504 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 P +++ AE + + + + A+++ A Sbjct: 505 WTALPGLREALFTEKAEGYAELKTTNLRETINQHPAAQALRNQVDAALS 553 >gi|150006176|ref|YP_001300920.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus ATCC 8482] gi|149934600|gb|ABR41298.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus ATCC 8482] Length = 517 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 214/558 (38%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55 M+E L + +W+ A L G+ +DF L F + L +E Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + + D + A ++ ++ S++ N LE + Sbjct: 59 ITFKELWKMDDADAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAIKRKENILPMLERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A N +GQE P T+ + ML+ + R Sbjct: 231 PTCGSGSLLLRAANIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + ++AI Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + + +K + + I+A+ + ++ + + + + Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y R+ + +S + + + P R ++ ++A + K Sbjct: 438 KIVETYRDRKEIEKYSHLASLQEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 AKRAELNKEIEVYLKELG 514 >gi|254670657|emb|CBA06718.1| type I restriction enzyme EcoR124II M protein [Neisseria meningitidis alpha153] Length = 512 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 103/487 (21%), Positives = 185/487 (37%), Gaps = 68/487 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----- 60 A L IWK A+++ G DF + +L R + A Sbjct: 2 QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSIDYAAMP 61 Query: 61 ------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS----- 108 + ++ + G F N + E + +T + + +S S Sbjct: 62 DSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSASGYPSE 121 Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHL 162 + K +F+ DF +T +RL +K L + K + ++ + + + YE+L Sbjct: 122 QDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDAYEYL 179 Query: 163 IRRFGSEVSEGAEDFMTPRDVV--HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 I + + + +F TP+ V L L + + + K +YDP CG+G L Sbjct: 180 ISNYAANAGKSGGEFFTPQSVSVSKLIARLAVHGQEKVNK--------IYDPACGSGSLL 231 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A + GQE+ T+ + M + + + +I+ G Sbjct: 232 LQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELGD 280 Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337 TL+ + F +SNPP+ W D RF P L S Sbjct: 281 TLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKADFA 335 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL +L Sbjct: 336 FILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPNL 388 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T IA + +LS K +Q I+A + N ++ ++ +I+ ++ Sbjct: 389 FYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLFA 441 Query: 458 SRENGKF 464 + + Sbjct: 442 DKADVPH 448 >gi|114563124|ref|YP_750637.1| type I restriction-modification system, M subunit [Shewanella frigidimarina NCIMB 400] gi|114334417|gb|ABI71799.1| type I restriction-modification system, M subunit [Shewanella frigidimarina NCIMB 400] Length = 523 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 182/490 (37%), Gaps = 71/490 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59 A L IW A D+ G DF + +L R + E Sbjct: 5 QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFELYITGGDESVNYAAMD 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----------ASFS 108 + + ++ GY F S+ + + + NL + + + Sbjct: 65 DSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLATIFAAIENSANGYD 123 Query: 109 DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICK-----NFSGIELHPDTVPDRVMSN 157 K I F DF +T RL K L + K F E + + + Sbjct: 124 SE-KDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGD 182 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP G+G Sbjct: 183 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSG 234 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H GQEL T+ + M + + D NIQ Sbjct: 235 SLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDK-----FNIQ 283 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL++ F + F +SNPP+ KW D RF P L S Sbjct: 284 LGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKA 338 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G E +IR++L++N+ +E +++L Sbjct: 339 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGV---EQKIRQYLVDNNYVETVISLA 391 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T IA + +LS KT+ Q I+A+ L+ N ++++ QI+ Sbjct: 392 PNLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNTLSNEHIEQIIK 444 Query: 455 IYVSRENGKF 464 ++ ++EN Sbjct: 445 VFANKENVDH 454 >gi|291515463|emb|CBK64673.1| type I restriction system adenine methylase (hsdM) [Alistipes shahii WAL 8301] Length = 517 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 214/558 (38%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55 M+E L + +W+ A L G+ +DF L F + L +E Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + + D + A ++ ++ S++ N LE + Sbjct: 59 ITFKKLWEMKDADAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAVKRKENILPMLERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A N +GQE P T+ + ML+ + R Sbjct: 231 PTCGSGSLLLRAANIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPR 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + ++AI Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + + +K + + I+A+ + ++ + + + + Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y R+ + +S + + + P R ++ ++A + K Sbjct: 438 KIVETYRDRKEIEKYSHLATLKEVEENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 AKRAELDKEIEVYLKELG 514 >gi|260589481|ref|ZP_05855394.1| type I restriction-modification system, M subunit [Blautia hansenii DSM 20583] gi|260540049|gb|EEX20618.1| type I restriction-modification system, M subunit [Blautia hansenii DSM 20583] Length = 522 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 114/501 (22%), Positives = 189/501 (37%), Gaps = 70/501 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------ 49 T+ L IW A++L G DF +L R + + Sbjct: 4 TKKEQEREELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITAYINSGEIEAGN 63 Query: 50 ---PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNL----E 101 + E+ + + F + F N + SL + E Sbjct: 64 IDFDYAKMIDEEAEEAREGLVQEKGFFILPSELFCNVRARASLDENLNETLEQVFCHIEE 123 Query: 102 SYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154 S S S+N +F+DFD +S +L ++ L K+ + + L Sbjct: 124 SAQGSQSENSFAGLFDDFDVNS--NKLGSTVAKRNERLVKLLDGVAAMNLGSVKDHDIDA 181 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE+L+ + S + +F TP DV L T L + K +YDP C Sbjct: 182 FGDAYEYLMTMYASNAGKSGGEFFTPADVSVLLTKLGTVGKTTINK--------VYDPAC 233 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L A + K +GQE+ T+ +C M + + D Sbjct: 234 GSGSLLLKAEKLL------GKEAVTSGFYGQEINITTYNLCRINMFLHDIGFDKF----- 282 Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 +I+ TL+ + F +SNPP+ KW D + + RF P L Sbjct: 283 DIECEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDDNPL-----LINDPRFAPAGVLAPK 337 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S M F+MH + L G AAIV ++ G A E +IR+++++N+ I+ I+ Sbjct: 338 SKADMAFIMHSLSWLAP----NGTAAIVCFPGIMYRGGA---EKKIRQYMVDNNYIDCII 390 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T+IAT + ++ K + + I+AT+ + N + DD Sbjct: 391 QLPNNLFFGTSIATCIMVMKKGKKD---NNILFIDATNECIKVTN----NNKLTDDNIEN 443 Query: 452 ILDIYVSRENGKFSRMLDYRT 472 I+ +V R + + L Sbjct: 444 IIKWFVERREIEHTVHLATYD 464 >gi|332877056|ref|ZP_08444807.1| type I restriction-modification system, M subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684946|gb|EGJ57792.1| type I restriction-modification system, M subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 517 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 112/558 (20%), Positives = 221/558 (39%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52 M+E L + +W+ A L G+ +DF L F + L LE Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIENFVNGELEDDE 58 Query: 53 SAVREKYLAFGGSNIDLESFVKV---AGYSFYNTSEYSLSTL-----GSTNTRNNLESYI 104 + +E + +L+ VK + ++ +Y S++ N LE + Sbjct: 59 VSFKELWNMDDEDTAELQEEVKDLCLSEIGYFIEPQYLFSSVIESIKKKENILPMLERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGRDSEEDFGGLFSDIDLASPKLGKTADDKNTLISNVLLALDEIKFGVEASKE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ + +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTIGHE--------RLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A I + +GQE P T+ + ML+ ++ Sbjct: 231 PTCGSGSLLLRA----------AHIGNAVEIYGQEKNPTTYNLARMNMLLHGIKF----- 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SDFKIENGDTLEADAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L + GG A V LF G A E IRR+L+E + ++AI Sbjct: 331 KTADYAFILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + +L +K + + I+A+ + ++ + + + + Sbjct: 384 IGLPANIFYGTSIPTCVLVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPEHIK 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I+D Y R+ + +S + + + P R ++ ++A + K Sbjct: 438 KIVDTYRDRKEIEKYSHLATLQEIADNDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 AKRANLDKEIEGYLKELG 514 >gi|197336572|ref|YP_002157415.1| type I restriction-modification system, M subunit [Vibrio fischeri MJ11] gi|197315275|gb|ACH64723.1| type I restriction-modification system, M subunit [Vibrio fischeri MJ11] Length = 515 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 199/540 (36%), Gaps = 55/540 (10%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGGSNID 68 + +W +A L G + +++ +L ++ + + + V + + G +I+ Sbjct: 12 DTLWDSAVALRGALQPSEYKHPVLGLLFIKYVSDSFTELQVNLKEWVADANHDYYGMDIN 71 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIAR 126 + F+ E L + + N+ + + Sbjct: 72 DPDLYEAE-NVFWVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNSQLKGMLYRGFGL 130 Query: 127 LE-KAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 L+ + L ++ + + + V+ YE + +F A F TP +V Sbjct: 131 LKIPSSKLGELIDLLGKLTFNSKEHRSADVLGQAYEFFLGKFALAEGASAGAFYTPESIV 190 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 ++ LY+P G+GG + + + G + +G Sbjct: 191 STIVEVIAPTKG-----------QLYEPAIGSGGMVVCSEKFMERNGGERG---DISVYG 236 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QE T + + IR L+ D ++ + TL DL R Y ++NPPF ++ Sbjct: 237 QEYTHTTWKMAAMNLTIRGLDFDLGKENA------DTLLNDLHKDLRADYIMANPPFNQE 290 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 R+ G P S+ + ++ H+ L N GRA +V+++ Sbjct: 291 KWGAAKVAG-------DVRWKWGQPSDSNANYAWIQHMLYHL----NETGRAGVVMANGA 339 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 + + E IR+ ++E+DL+E +VALP LF T I + ++ + K +R+G+ Sbjct: 340 MTSTANN--EDAIRKAIIEDDLVECMVALPPKLFINTQIPSCIFFFNKNK--KRKGETLF 395 Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF----SRMLDYRTFGYRRIKV 480 I+A L R E + + + +++ +I + Y + F S+ +D F + K+ Sbjct: 396 IDARHLG---RLESRAQLVFDEEHIMEIANTYHAWAKTDFAEKDSKYVDIAGFC-KSGKL 451 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 + F+L + +Q + + +QI + +K S+ Sbjct: 452 EDIEKAGFVLSPGRYVGAAE---VEEDEASYQEDMATLTGQLSEQIKKSVSLDEQIKASL 508 >gi|47459121|ref|YP_015983.1| type I restriction enzyme m protein [Mycoplasma mobile 163K] gi|47458450|gb|AAT27772.1| type I restriction enzyme m protein [Mycoplasma mobile 163K] Length = 524 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 113/500 (22%), Positives = 191/500 (38%), Gaps = 77/500 (15%) Query: 1 MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------P 50 M L IWK A DL G DF + +L R + L Sbjct: 1 MNNNKEIERNELHRTIWKIANDLRGSVDGWDFKQYVLGMLFYRYISENLANYINQGEWKA 60 Query: 51 TR-----------SAVREKYLAFGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTN 95 T+ + K + + F + F N S+ + Sbjct: 61 TKKQDFRYENISDDKILSKKEEIK-ELVKEKGFFIRPSHLFVNIRKNASKNKDLNVALDK 119 Query: 96 TRNNLESYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP- 147 +E+ S + K +F+D + +S ++L E+ L K+ N ++L Sbjct: 120 VFKEIEASANGSSSEKDFKGLFDDINLNS--SKLGSTVNERNEKLTKLINNIGEMKLGNF 177 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + YE+L+ + S + ++ TP++V L T + L + + K Sbjct: 178 KDNSIDAFGDAYEYLMSMYASNAGKSGGEYYTPQEVSELLTKITLIGKNEINK------- 230 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP CG+G L + + K GQE+ T+ +C M + + + Sbjct: 231 -VYDPACGSGSLLLNFAKIL------GKEKVRQGFFGQEINQTTYNLCRINMFLHDINYN 283 Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 NI QG TL+ L + F +SNPP+ KW + + RF P Sbjct: 284 KF-----NISQGDTLTNPLHNKFEPFEAIVSNPPYSIKWAGKSNPL-----LINDPRFSP 333 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S + F+MH + L G AAIV ++ A E +IR++L++N Sbjct: 334 AGVLAPESKADLAFVMHSLSYLAS----NGTAAIVTFPGVMYRKGA---EEKIRKYLIDN 386 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+AI+ LP +LFF T+IAT + +L K E I+A+ + N + Sbjct: 387 NFIDAIIQLPENLFFGTSIATCVLVLKKNKKENST---LFIDASKEFQKATNS----NKL 439 Query: 445 NDDQRRQILDIYVSRENGKF 464 + +IL+ Y R + ++ Sbjct: 440 LSENISKILNTYEKRLDQEY 459 >gi|325066640|ref|ZP_08125313.1| type I restriction-modification system, M subunit [Actinomyces oris K20] Length = 519 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 106/496 (21%), Positives = 187/496 (37%), Gaps = 76/496 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ T A+L IW+ A DL G DF +L F R + E + Sbjct: 1 MSKETE-RAALHQTIWRVANDLRGSLDGWDFKAYVLGFLFYRFIS---ENLTEYINAGER 56 Query: 61 AFGGSNIDLESFVKV----------AGYSFYNTSEYSLSTLGSTNTRN-NLESYIA---- 105 G + D F+ + R+ NL ++ Sbjct: 57 EAGDPDFDYRFLSHADAEGAREGIVEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFK 116 Query: 106 ---------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151 + + +F+D D +ST +L ++ L ++ + ++L Sbjct: 117 SIEASATGTGSESDLRGLFDDVDVNST--KLGRTVAQRNDKLTRLMQAIGDLDLSYGESS 174 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE+L+ + S + +F TP++V + + + ++ +YD Sbjct: 175 IDTFGDAYEYLMTMYASNAGKSGGEFFTPQEVSEVLARITVMGKTSVN--------RVYD 226 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L + K GQE+ T+ +C M + + Sbjct: 227 PACGSGSLLLKFAKVL------GKDNVRGGFFGQEINLTTYNLCRINMFLHDINF----- 275 Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 +I G TL+ + F +SNPP+ KW D RF P L Sbjct: 276 ADFSIAHGDTLTDPAHWDDEPFEAIVSNPPYSTKWIGKDDPA-----LINDPRFSPAGVL 330 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F MH+ + L + G AAIV LF G A E++IR++L+E + ++ Sbjct: 331 APKSKADLAFTMHMLSWLAVD----GTAAIVEFPGVLFRGGA---EAKIRQYLVEYNYVD 383 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 A++ LP DLFF TNI T + +L K + V ++A+ + N + ++ + Sbjct: 384 AVIQLPPDLFFGTNIRTCVIVLKKSKQD---NNVLFVDASKQFVREDN----KNKLSAEN 436 Query: 449 RRQILDIYVSRENGKF 464 ++ IL+ R + Sbjct: 437 QKMILETLAKRVDIDH 452 >gi|289435130|ref|YP_003465002.1| type I restriction-modification system, M subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171374|emb|CBH27916.1| type I restriction-modification system, M subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 871 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 100/482 (20%), Positives = 186/482 (38%), Gaps = 70/482 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + N +W A+ L G + + IL ++ + Sbjct: 1 MAIKKSEIYNQLWAAADKLRGGVEPARYKNYILTMLFVKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 D A SF + ++ T ++ + +N K I + DF S Sbjct: 45 YKTSDDWEIEIPADSSFDDIVKHKFQTDIGEKINTSISAIAEK--NNLKGIIDIADFDS- 101 Query: 124 IARLEKA----GLLYKICKNFSGIE---LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 L + + + F E D ++ + YE+L+R+F + + Sbjct: 102 -NELGEGKTHVDKVSDLVAIFQKPELDFTKNRAGGDDILGDAYEYLMRKFAQDSGKSKGQ 160 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V + ++ ++ T+YDP CG+G L A + Sbjct: 161 FYTPGEVSRVMARVI------GLDKATSSSMTVYDPACGSGSLLIRAADVAL-------- 206 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 + +GQE +P T + +++ + IQ+G+TL+ + KRF Sbjct: 207 -VEITIYGQEYDPSTAGLARMNLVLHN-------KGAGEIQRGNTLADPKWKENNQLKRF 258 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 Y + NPPF K D + + G G G+P +G + +H+ L+ Sbjct: 259 DYIVVNPPFSDKSWTDGTLPD---QYGRYSEVGYGVPPEKNGDYAWFLHVLKSLKAK--- 312 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+AAI+L LF G E EIR+ ++++ I+ I+ LP ++FF T I + I+ Sbjct: 313 -GKAAIILPHGVLFRGNT---EGEIRKKIIDHGYIKGIIGLPANIFFGTGIPACIIIVDK 368 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470 ER G + +I+A+ + EG K R + + +I+ + + + K++R + Sbjct: 369 EDAVEREG-IFMIDASQDFV---KEGNKNR-LREQDIEKIVRTFNTMDQSDTKYARFVLN 423 Query: 471 RT 472 Sbjct: 424 EE 425 >gi|302347045|ref|YP_003815343.1| type I restriction-modification system, M subunit [Prevotella melaninogenica ATCC 25845] gi|302151002|gb|ADK97263.1| type I restriction-modification system, M subunit [Prevotella melaninogenica ATCC 25845] Length = 518 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 110/556 (19%), Positives = 208/556 (37%), Gaps = 75/556 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------SA 54 M+E L + +W+ A L G+ +DF L F + L +E Sbjct: 1 MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANDALVDDE 58 Query: 55 VREKYLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTL-----GSTNTRNNLESY 103 V K L + D+E + + ++ + S++ N LE Sbjct: 59 VTFKELWSMEKDTDIEELQESVKTECIENIGYFIEPNFLFSSVIESIKKKENILPILERS 118 Query: 104 IASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151 + D+ + EDF D +L +K L+ + I+ + Sbjct: 119 LKRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQ 178 Query: 152 DRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + + YE++I +F + + A +F TP++V + ++ +R +Y Sbjct: 179 EIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHA--------RLRNVY 230 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L A + GQE P T+ + ML+ ++ Sbjct: 231 DPTCGSGSLLLRAASIGHAN----------EIFGQEKNPTTYNLARMNMLLHGIKF---- 276 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 277 -SNFRIENGDTLEADAFGDTQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAP 330 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389 F++H+ L N GG A V LF G A E IRR+L+E + ++A Sbjct: 331 RKTADYAFILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDA 383 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP ++F+ T+I T + + +K + + I+A+ + I+ + + Sbjct: 384 IIGLPANIFYGTSIPTCILVF--KKCRKEDDSILFIDASKDFEKIKT----QNKLRPQHI 437 Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++I+D Y R+ + +S + + P + ++ + + L Sbjct: 438 QKIVDTYRDRKEIEKYSHLATLEEIAENDYNLNIPRYVDTFEEEEPIDIHAVMKEIKDLE 497 Query: 509 PLHQSFWLDILKPMMQ 524 +I + + Sbjct: 498 AKRADLDKEIEGYLKE 513 >gi|226310298|ref|YP_002770192.1| type I restriction modification system DNA methylase [Brevibacillus brevis NBRC 100599] gi|226093246|dbj|BAH41688.1| type I restriction modification system DNA methylase [Brevibacillus brevis NBRC 100599] Length = 515 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 109/487 (22%), Positives = 184/487 (37%), Gaps = 66/487 (13%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVREKYL- 60 A L + IWK A D+ G DF + +L R + + Sbjct: 4 AAQRAELQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDESVKYAEL 63 Query: 61 -------AFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGST--NTRNNLESYIASFSD 109 I + + F N ++ + +L + + +ES + Sbjct: 64 PDDIITKEIKEDAIKTKGYFIYPSQLFANIAKTANTNESLNTDLAAIFSAIESSANGYPS 123 Query: 110 NAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162 I F DF +T RL +K+ L + K G+ + + YE+L Sbjct: 124 EL-DINGLFADFDTTSNRLGNTVKDKSSRLAAVIKGVEGLNFGDFEDSHIDLFGDAYEYL 182 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 183 ISNYAANAGKSGGEFFTPQCVSKLIAQLAIHNQTTINK--------IYDPAAGSGSLLLQ 234 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A +GQE+ T+ + M + + D NI G+TL Sbjct: 235 AKKQFDAHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDKF-----NIALGNTL 283 Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339 F ++ F +SNPP+ W D RF P L S F+ Sbjct: 284 LDPHFGDEKPFDAIVSNPPYSVNWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFV 338 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H + L GRAAIV + G A E +IR++L++N+ +E +++L +LF+ Sbjct: 339 LHTLSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETVISLAPNLFY 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIYV 457 T+IA + +LS KT+ K Q I+A+ D + N I+ D+ +I+ I+ Sbjct: 392 GTSIAVNILVLSKHKTD---NKTQFIDASGVDFYKKETN----NNILTDEHIERIMKIFN 444 Query: 458 SRENGKF 464 ++E+ Sbjct: 445 NKEDIDH 451 >gi|289433646|ref|YP_003463518.1| type I restriction-modification system, M subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169890|emb|CBH26430.1| type I restriction-modification system, M subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 858 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 109/526 (20%), Positives = 186/526 (35%), Gaps = 79/526 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTR-----------SA 54 ++ + +W A +L G + + +L + L LE + Sbjct: 3 TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEIFKANSDCGQVSESEL 62 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103 V E A L+ ++ F + L N E Sbjct: 63 VEEYAKARADYGESLDKMIQGVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122 Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I + SD+ + +F T L E++ + + + F + + V+ Sbjct: 123 ISVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F E + A +F TPR V + + I ++YDPT G+ Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L H+ + + L +GQE T+ + +L+ + + + Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEKMS-----V 282 Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 + G TLS+D F + NPP+ K + RF Sbjct: 283 KNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFEIAGV 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP S G FL+H L G AIVL LF G E EIR+ LL + I Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + I+ LP +LF T I + IL +T V +I+A+ + + K+ ++ + Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRT--ISDPVLVIDASRNFIKV----GKQNVLQEK 443 Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 +I+D YV R +S + + P + I ++ Sbjct: 444 DIARIVDTYVERAEKTGYSHLASREEIIENEYNMNIPRYVEAIDEE 489 >gi|15611853|ref|NP_223504.1| Type I restriction enzyme modification subunit [Helicobacter pylori J99] gi|4155366|gb|AAD06378.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter pylori J99] Length = 528 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 115/536 (21%), Positives = 195/536 (36%), Gaps = 74/536 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56 + + L N IWK A +L G DF + +L R + + + Sbjct: 13 NHASLARNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKIDP 72 Query: 57 ---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107 E+ S I+ + F F N + + + T N+ + I Sbjct: 73 NFDYASLSDEEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFNEIEKS 132 Query: 108 S------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157 S +N K +F D D +S + + L KI + G++L V + Sbjct: 133 SLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGD 192 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+L+ + S + ++ TP++V L + L + + K +YDP CG+G Sbjct: 193 AYEYLMAMYASNAGKSGGEYFTPQEVSELLAKITLHNQENINK--------VYDPCCGSG 244 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + D GQE+ T+ +C M + + +I Sbjct: 245 SLLLQFSKVLGDKNVLKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFHIA 293 Query: 278 QGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDG 334 G TL + F +SNPP+ KW D + + RF L + Sbjct: 294 LGDTLLDPKHEDDEPFDAIVSNPPYSTKWIGDNNPLLMN-----DERFNKAGALAPKNAA 348 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + F MH+ + L G AAIV L+ A E +IR +L++ + I+ ++ALP Sbjct: 349 DLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRSGA---EKKIREYLVKENFIDCVIALP 401 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF TNIAT + +L K ++ I+A+ + K+ + R +IL Sbjct: 402 ENLFFGTNIATCILVLKKNKKDDTT---LFIDASKEFLKE----GKKNKLKAHNREKILQ 454 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 Y+ R+ K L + + + L E + L Sbjct: 455 TYIERKAIKHFSALAN---------IEKIQENDYNLSVNRYVEQEDTKEIIDIKAL 501 >gi|37528149|ref|NP_931494.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787586|emb|CAE16691.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus luminescens subsp. laumondii TTO1] Length = 518 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 194/492 (39%), Gaps = 71/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54 MT T A L IW+ A D+ G DF + +L R + Sbjct: 1 MT-STQQRAELQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDESIN 59 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107 E A +I ++ K GY Y S+ + + N +NL + S Sbjct: 60 YAELSDAVITDDIKDDAI-KTKGYFIY-PSQLFANIAENANKNDNLNKDLNSIFVAIESS 117 Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155 K +F DF +T RL +K L + K +G++ ++ + Sbjct: 118 ANGYPSEAEIKGLFA--DFDTTSNRLGNTVKDKNTRLAAVLKGVAGLKFGQFESNKIDLF 175 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP+ V L L + ++ K +YDP G Sbjct: 176 GDAYEFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTSVNK--------IYDPAAG 227 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A H GQE+ T+ + M + + D N Sbjct: 228 SGSLLLQAKKHFDAHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----N 276 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G+TL++ F + F +SNPP+ KW D RF P L S Sbjct: 277 IMLGNTLTEPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKS 331 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L GRAAIV + G A E +IR++L++N+ +E +++ Sbjct: 332 KADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVIS 384 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T IA + +LS KT+ Q I+A+ L+ N I+ D+ QI Sbjct: 385 LAPNLFFGTTIAVNILVLSKHKTDTTT---QFIDASPLFKKETN----NNILTDNHIEQI 437 Query: 453 LDIYVSRENGKF 464 + ++ S+++ + Sbjct: 438 MQVFDSKDDVEH 449 >gi|145628525|ref|ZP_01784325.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae 22.1-21] gi|145639725|ref|ZP_01795327.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae PittII] gi|144978995|gb|EDJ88681.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae 22.1-21] gi|145271093|gb|EDK11008.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae PittII] Length = 515 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 111/492 (22%), Positives = 186/492 (37%), Gaps = 69/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54 M A L IW+ A D+ G DF + +L R + Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFY------------NTSEYSLSTLGSTNTRNNLES 102 E +K GY Y NT+ + L N ++E+ Sbjct: 61 YSAFNDDAPIIAAIKEDTIKAKGYFIYPSQLFKNVVATANTNPNLNTDLK--NIFTDIEN 118 Query: 103 YIASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM- 155 F + + I F DF +T RL +K L + K + ++ + Sbjct: 119 SATGF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLF 177 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+LI + + + +F TP+ V L + + ++ K +YDP G Sbjct: 178 GDAYEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAG 229 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A + GQE+ T+ + M + + D + Sbjct: 230 SGSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 278 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 279 IALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKS 333 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L + GRAAIV + G A E +IR++L++N+ ++A++A Sbjct: 334 KADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIA 386 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QI Sbjct: 387 LAPNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQI 439 Query: 453 LDIYVSRENGKF 464 L ++ +E+ Sbjct: 440 LKLFADKEDVPH 451 >gi|253569687|ref|ZP_04847096.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. 1_1_6] gi|251840068|gb|EES68150.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. 1_1_6] Length = 517 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 106/544 (19%), Positives = 208/544 (38%), Gaps = 77/544 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M+E L + +W+ A L G+ +DF L F + L +E ++ + Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIETYANSALDDDE 58 Query: 58 --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + ++ D + ++ ++ S++ N LE + Sbjct: 59 VTFKELWEMTDSDAPELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKRKENVLPMLERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGH--------NRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A + +GQE P T+ + ML+ + R Sbjct: 231 PTCGSGSLLLRAASIGKAAY----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 S I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SSFKIENGDTLEWDAFDDMQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + I+AI Sbjct: 331 KTADYAFILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + +L +K + + I+A+ + ++ + + + Sbjct: 384 IGLPANIFYGTSIPTCILVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPQHIQ 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y R+ + +S + + + ++ ++ +++ Sbjct: 438 KIVETYRDRKEIEKYSHLATLQEVAENDYNLN---ISRYVDTFEEEEPIDIKAVMAEITE 494 Query: 510 LHQS 513 L Sbjct: 495 LEAK 498 >gi|295090549|emb|CBK76656.1| type I restriction system adenine methylase (hsdM) [Clostridium cf. saccharolyticum K10] Length = 816 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 95/514 (18%), Positives = 195/514 (37%), Gaps = 74/514 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + + + IW + L G + + IL ++ + + + D Sbjct: 6 SEIYSQIWAACDKLRGGVEPARYKDYILTLLFVKYVSDRFKSS----------------D 49 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS-TIARL 127 G SF + + + ++ K I + DF+S + Sbjct: 50 NWDIEVPDGGSFDDIIALKYKKNIGEGINIIIGKLAEA--NDLKGIIDIADFNSEELGTD 107 Query: 128 EKA-GLLYKICKNFSGIE---LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++A L + + F E + D ++ + YE L+R+F + + F TP +V Sbjct: 108 KEAVDKLSGLVEIFQKPELDFTNNRAGGDDILGDAYEFLMRKFAQDSGKSKGQFYTPGEV 167 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + ++ ++ T+YDP CG+G L A + + P + + Sbjct: 168 SRIMAKVI------GIDKATDPSMTVYDPACGSGSLLIRAAD---------EAPCEISIY 212 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGK-------RFHY 294 GQE + T + +++ + G+ TLS + + F+Y Sbjct: 213 GQEKDNSTAGLARMNLVLHN--------KGAGVIVGNKSTLSAPQYKDENNPELLKTFNY 264 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 + NPPF K D + + G G+P +G +L+H+ L+ G Sbjct: 265 IVVNPPFSDKSWMDGITIPDSY--GRYSEAVLGVPPEKNGDYAWLLHVLKSLKST----G 318 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AAI+L LF G A E++IR+ +++ I+ I+ LP +LF+ T I + +L Sbjct: 319 KAAIILPHGVLFRGNA---EADIRKRIIDRGYIKGIIGLPANLFYGTGIPACILVLDKED 375 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRT 472 +R G + +I+A+ + +G K R + + +I+ +++ + ++R + Sbjct: 376 AADRTG-IFMIDASKGYV---KDGNKNR-LREQDIHKIVTTFLTMDESDPKYARFVPNEE 430 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 ++ L + +D + L+ Sbjct: 431 I---KVTNEYNLNIPRYIDSSEPEDLQDIDAHLN 461 >gi|261380921|ref|ZP_05985494.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria subflava NJ9703] gi|284796174|gb|EFC51521.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria subflava NJ9703] Length = 871 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 111/488 (22%), Positives = 192/488 (39%), Gaps = 59/488 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVREKYLAFGG- 64 + LA IW++A + + ++ IL F + L LE EK Sbjct: 2 NKQQLAAKIWQSANKMRSKIEANEYKDYILGFIFYKFLSDKLEKFALEQGLEKSNFADEL 61 Query: 65 ---SNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116 + + + + GY Y + GS ++ + +++FS N +F+ Sbjct: 62 TESNGVLVNHIKRNLGYFISYEHLFSTWLAQGSDFNIAHVRTAMSAFSRNIADNYTTVFD 121 Query: 117 DF--DFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEV 170 S +++L + F I P V+ IYE+LI F + Sbjct: 122 GIFKTLESGLSKLGDGATNQTNAVKDLFVLIADIPMDGKQGYDVLGFIYEYLISMFAANA 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ D + ++YDPT G+G L + + VA Sbjct: 182 GKKAGEFYTPHEVSLLMSEIIADHLKDREEI------SIYDPTSGSGSLLINIGHSVAKH 235 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDLFT 288 + + QEL+ T+ + +++R + L NI + TL D Sbjct: 236 LKSA---DSIKYYAQELKENTYNLTRMNLVMRGI-------LPSNIFTRNADTLEDDWPL 285 Query: 289 GKRFHY---CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 Y +SNPP+ + W + +K RF G+ + FL+H Sbjct: 286 EGEPLYLDAVVSNPPYSQPWNPKDKESDIRYK-----RF--GVAPQAKADFAFLLHDLFH 338 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G IVL LF G E +IR+ L+E + I+AI+ LP ++FF T I T Sbjct: 339 LKPD----GIMTIVLPHGVLFRGGE---EEKIRKNLIEYNHIDAIIGLPANIFFGTGIPT 391 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464 + +L + E R V +I+A+ + + K + ++I+D R KF Sbjct: 392 IIVVL---RQERERNDVLMIDASKYFIKV----GKNNHLQASDIKRIVDCVTHRRELPKF 444 Query: 465 SRMLDYRT 472 SR++ Sbjct: 445 SRIVPKAE 452 >gi|317181216|dbj|BAJ59002.1| Type I restriction enzyme M protein [Helicobacter pylori F32] Length = 821 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 120/596 (20%), Positives = 223/596 (37%), Gaps = 87/596 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + +S ++V FY E L+ G + L IA ++ + K + + DF+ Sbjct: 48 DAKNNTDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEKNDLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARTRKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESQKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 470 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525 >gi|317182160|dbj|BAJ59944.1| Type I restriction enzyme M protein [Helicobacter pylori F57] Length = 529 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 122/580 (21%), Positives = 208/580 (35%), Gaps = 86/580 (14%) Query: 1 MTEFTGSAA--------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT- 51 M A L N IWK A +L G DF + +L R + + Sbjct: 1 MENKNTQANKSSSLERNELHNTIWKMANELRGSVDGWDFKQYVLGILFYRYISENMAYYI 60 Query: 52 -RSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 + E+ I + F F N + + + T Sbjct: 61 NKQEREHDPNFDYASLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPNNGDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI + G++L Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ KW D + + RF Sbjct: 284 --YSKFHIVHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPI-----LINDERFSKA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + + F MH+ + L G AAIV L+ G A E++IR +L++ + Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R +IL Y R+ K L + + + L E Sbjct: 443 EHNREKILQTYTERKIIKHFSALAS---------IEKIKENDYNLSVNRYVEQEDTKEII 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L +I + + +Q + +KE + A Sbjct: 494 DIKAL----QFEISQIVQKQSALRNSLDRIIKELEEGQNA 529 >gi|301168868|emb|CBW28459.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae 10810] Length = 514 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 183/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N +N +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEFLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L + GRAAIV + G A E +IR++L++N+ ++A++AL Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|253991441|ref|YP_003042797.1| type I restriction enzyme, modification subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782891|emb|CAQ86056.1| type I restriction enzyme, modification subunit [Photorhabdus asymbiotica] Length = 721 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 122/491 (24%), Positives = 195/491 (39%), Gaps = 69/491 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 MT F A L IW A D+ G DF + +L R + A + Sbjct: 1 MTSF-QQRAELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIH 59 Query: 59 YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107 Y A S I + +K GY Y S+ + +T + L + + S Sbjct: 60 YAALDDSIITDDIKDDAIKTKGYFIY-PSQLFCNVAAKASTNDRLNADLNSIFVAIESSA 118 Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMS 156 + K +F DF +T RL +K L + K G++L + + Sbjct: 119 YGYPSEADIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVLKGVEGLKLGNFNDHQIDLFG 176 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE LI + + + +F TP+ V L L + + K +YDP G+ Sbjct: 177 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGS 228 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A H + GQE+ T + M + + D +I Sbjct: 229 GSLLLQAKKHFDNHIIEEG------FFGQEINHTTFNLARMNMFLHNINYDKF-----DI 277 Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 + G+TL++ F ++ F +SNPP+ KW D RF P L S Sbjct: 278 RLGNTLTEPHFGDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSK 332 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 F++H N L + GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 333 ADFAFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISL 385 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 +LFF T IA + +LS KT+ VQ I+A+ L+ N I+ D QI+ Sbjct: 386 APNLFFGTTIAVNILVLSKHKTDTS---VQFIDASGLFKKETN----NNILTDAHIAQIM 438 Query: 454 DIYVSRENGKF 464 ++ S+ + Sbjct: 439 QVFSSKSDVDH 449 >gi|333030656|ref|ZP_08458717.1| type I restriction-modification system, M subunit [Bacteroides coprosuis DSM 18011] gi|332741253|gb|EGJ71735.1| type I restriction-modification system, M subunit [Bacteroides coprosuis DSM 18011] Length = 515 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 116/554 (20%), Positives = 201/554 (36%), Gaps = 69/554 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT + L IWK A D+ G DF + +L R + A + + Sbjct: 1 MT-SSNQRKELQAKIWKIANDVRGSVDGWDFKQFVLGTLFYRFISENFSNYMEAGDDSFH 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108 I + + F N + + + + I S + Sbjct: 60 YASLPDDIITPDLKDDAIKTKGYFIYPSQLFKNVAHTANTNTNLNTDLKAIFDAIESSAL 119 Query: 109 -----DNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 K +F DFD +T+ K L + K ++ + + + Sbjct: 120 GYASEKEIKGLFADFDTTSTRLGNTVE--NKNKRLAAVLKGVEELDFGDFEENQIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP G+G Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQQVSKLIAQLAMHKQTSVNK--------IYDPAAGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H + GQE+ T+ + M + + D NI Sbjct: 230 SLLLQAKKHFDNHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIA 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL F + F +SNPP+ KW D D RF P L S Sbjct: 279 LGDTLINPQFGDDKPFDAIVSNPPYSVKWIGDDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 334 DFAFVLHALSYLSSR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+IA + +LS K + K Q I+A+ + + D ++I+ Sbjct: 387 PNLFYGTSIAVNILVLSKHKAD---TKTQFIDASG--EDFFKKVTNNNELTDAHIKKIMQ 441 Query: 455 IYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR---KLSPL 510 I+ S+EN K+ ++ +D + + F + + +E + K Sbjct: 442 IFDSKENVKYIAQSIDNTQIAKNDYNLSVSSYVEFEDTREKVDIVELNKELAVTVKKIDQ 501 Query: 511 HQSFWLDILKPMMQ 524 ++ I+K + Sbjct: 502 LRTDIDAIVKEIEA 515 >gi|284048513|ref|YP_003398852.1| type I restriction-modification system, M subunit [Acidaminococcus fermentans DSM 20731] gi|283952734|gb|ADB47537.1| type I restriction-modification system, M subunit [Acidaminococcus fermentans DSM 20731] Length = 857 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 104/493 (21%), Positives = 192/493 (38%), Gaps = 78/493 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSAV 55 + LA+ IW++A + + ++ IL F + L E R V Sbjct: 2 NKQKLASKIWESANKMRSKIEANEYKDYILGFIFYKYLSDQEERYLLQRDYRPEDIRDYV 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNA 111 E+ D + F + ++G T +N+ + ++SF S Sbjct: 62 NEEDAETVQMVQDNLGYFIAYKDMFS-----TWLSMGRDFTVDNVRTALSSFTRLISPTH 116 Query: 112 KAIFED-FD-FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 K +F+ F+ + +++L + + + + I + V+ IYE+LI Sbjct: 117 KLVFDKIFNTLETGLSKLGENTKSQTKAVRDLLQLIKDIPMDGK-QDYDVLGFIYEYLIS 175 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 +F + + A +F TP +V L + ++ + ++YDPT G+G L + Sbjct: 176 QFAANAGKKAGEFYTPHEVSQLMSEIIAHYLQGREEI------SIYDPTSGSGSLLINIG 229 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTL 282 + A + + QEL+ T+ + +++R + L NI + G TL Sbjct: 230 HAAAKYMKDANK---IRYYAQELKQNTYNLTRMNLVMRGI-------LPANIIARNGDTL 279 Query: 283 SKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 +D + +SNPP+ ++W+ + RF GL Sbjct: 280 EEDWPYFDDSDPTGTYNPLYVDAVVSNPPYSQQWDPSGKDNDPR-----YSRF--GLAPK 332 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G IVL LF G E IR+ L+E + I+AI+ Sbjct: 333 SKADYAFLLHDLYHLKPD----GIMNIVLPHGVLFRGGE---EGTIRKNLVEYNHIDAII 385 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP ++FF T I T + +L ++ V +++A+ + K + R+ Sbjct: 386 GLPANIFFGTGIPTIIMVLRQKRE---NTDVLIVDASKGFVKE----GKNNKLRASDIRR 438 Query: 452 ILDIYVSRENGKF 464 I+D +SR + Sbjct: 439 IVDTVISRRDVPQ 451 >gi|284931718|gb|ADC31656.1| type I restriction-modification system methyltransferase (M) subunit [Mycoplasma gallisepticum str. F] Length = 877 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 109/492 (22%), Positives = 188/492 (38%), Gaps = 74/492 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSAV 55 + L IW A ++ G+ + D+ IL F + L + + Sbjct: 2 TKQELVREIWAIANEMRGNIEANDYKDYILGFLFYKYLSDKQDEYFANKNVVKDEDKKQY 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNL------------ES 102 I +Y E ST + + N ++L S Sbjct: 62 LVALAEAEKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFERS 121 Query: 103 YIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + + ++ K IF+ D I +L E++ ++ IC + I + ++ Sbjct: 122 ILEKYEESFKDIFK--DLQVGIQKLGNTAYERSEAIWNICNLINKIPIT-SKQDYDILGF 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+LI F + + A +F TP +V L + + + L ++YDPT G+G Sbjct: 179 VYEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGL------KNVSIYDPTSGSG 232 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + + + QE+ T+ + +L+ + S + Sbjct: 233 SLLITLGRELK----KIDKNVKIQYYAQEVIDTTYNITRMNLLMNDVHSVNMFA-----K 283 Query: 278 QGSTLSKD--------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 G TL +D + KR +SNPP+ W + RF GL Sbjct: 284 CGDTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKEN--------DPRFRYGLA 335 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S + FL+H LE G IVL LF G E +IR+ L+ +D I+A Sbjct: 336 PKSKSELAFLLHSLYHLEDH----GILTIVLPHGVLFRGG---SELQIRQNLISHDHIDA 388 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP+++FF T I T + +L KT++ + V I+A+ +T EG K + Sbjct: 389 IIGLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFT---KEGNK-NKLQSSDI 444 Query: 450 RQILDIYVSREN 461 +I D + +RE+ Sbjct: 445 MRIYDAFSARED 456 >gi|322513993|ref|ZP_08067068.1| type I restriction-modification system DNA-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322120219|gb|EFX92177.1| type I restriction-modification system DNA-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 533 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 122/491 (24%), Positives = 192/491 (39%), Gaps = 68/491 (13%) Query: 2 TEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57 T A L IW+ A D+ G DF + +L R + A E Sbjct: 19 NNMTAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESV 78 Query: 58 KYLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS----- 108 Y I E +K GY Y S+ + + + NT NL S + FS Sbjct: 79 NYAKLPDEIITPEIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNSELKQIFSDIENS 137 Query: 109 ----DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV--MS 156 + + I F DF +T RL +K L + K + ++ D + + Sbjct: 138 ATGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFG-DFEDNHIDLFG 196 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE LI + + + +F TP+ V L L L D + K +YDP G+ Sbjct: 197 DAYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGS 248 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A + GQE+ T+ + M + + D +I Sbjct: 249 GSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DI 297 Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 G+TL F + F +SNPP+ KW D RF P L S Sbjct: 298 ALGNTLMNPQFGDDKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGVLAPKSK 352 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 F++H + L +G GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 353 ADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIAL 405 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL Sbjct: 406 APNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQIL 458 Query: 454 DIYVSRENGKF 464 ++ +E+ Sbjct: 459 KLFADKEDVPH 469 >gi|90961896|ref|YP_535812.1| Type I restriction-modification system methylation subunit [Lactobacillus salivarius UCC118] gi|90821090|gb|ABD99729.1| Type I restriction-modification system methylation subunit [Lactobacillus salivarius UCC118] Length = 529 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 113/543 (20%), Positives = 212/543 (39%), Gaps = 72/543 (13%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRSAVREKYLAF 62 +L + A L ++ L + L + L ++ E+ Sbjct: 7 TLERSLDNAANVLRSKMDANEYKNYTLGTIFYKYLSDSMLYYVAELLEEKNISLEEAQKL 66 Query: 63 GGSNIDLESFVKVAGYSF------YNTSEYSLSTLGS-----TNTRNNLESYIASFSDNA 111 N D + ++ F NT L ++ + + + S I S Sbjct: 67 YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNS-IESQGKEF 125 Query: 112 KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + +F+D+D S RL + + ++ +E+ P+ + N YE+LI++F Sbjct: 126 EGLFDDYDLYSK--RLGNTAQKQSDTISEVLSAIGKLEIV--KTPEDTLGNAYEYLIKQF 181 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 SE + A +F TP+ V L L L D T+YDPT G+G L + + Sbjct: 182 ASESGKKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKY 235 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V + P + GQE+ T+ + M++ ++ +++ ++ TL +D Sbjct: 236 V-------EHPKRITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDW 283 Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342 + F + NPP+ KW + + RF LP S FL+H Sbjct: 284 PVEEITNFDAVVMNPPYSHKWSANAGF-------KDDPRFSAYGVLPPKSKADYAFLLHG 336 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L+ G AIVL LF G A E +IR+ LLEN I+A++ LP +LF+ T+ Sbjct: 337 YYHLKHS----GVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTS 389 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461 I T + +L K + V I+A+ + ++ + + D+ +IL Y R++ Sbjct: 390 IPTTIVVLKKDKQDR---DVLFIDASKDFEKVKT----QNELRDEDVEKILTTYKERKDI 442 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 K++ + + + P + + + E R+ + + ++++ Sbjct: 443 DKYAHLASFDEIKENEFNLNIPRYVDTFEPEPEINLDEVSKELRETNEKIKENEIELISM 502 Query: 522 MMQ 524 + Sbjct: 503 LKD 505 >gi|29349946|ref|NP_813449.1| typeI restriction enzyme EcoR124II M protein [Bacteroides thetaiotaomicron VPI-5482] gi|29341857|gb|AAO79643.1| Type I restriction enzyme EcoR124II M protein [Bacteroides thetaiotaomicron VPI-5482] Length = 517 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 106/558 (18%), Positives = 214/558 (38%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M+E L + +W+ A L G+ +DF L F + L +E + Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALADDD 58 Query: 58 --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + + D + A ++ ++ S++ N LE + Sbjct: 59 ITFKELWETDDADAIELQEEAKNQCLENIGYFIEPQFLFSSVIEAIKRKENILPMLERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + +DF D +L +K L+ + I + + Sbjct: 119 KRIEDSTLGQDSEDDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDINFGLEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGH--------QRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A + +GQE P T+ + ML+ + R Sbjct: 231 PTCGSGSLLLRAASIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + ++AI Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + + +K + + I+A+ + ++ + + + + Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y R+ + +S + + + P R ++ ++A + K Sbjct: 438 KIVETYRDRKEIEKYSHLASLQEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 AKRAELDKEIEVYLKELG 514 >gi|212716798|ref|ZP_03324926.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM 16992] gi|212660276|gb|EEB20851.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM 16992] Length = 853 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 106/516 (20%), Positives = 197/516 (38%), Gaps = 66/516 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65 + LA+ IW++A + + ++ IL F + L L +++ + + Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETELMRLKASDFTEDDLPQLT 61 Query: 66 NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFED 117 + + V G Y + + G+ +N+ +++FS N K +F+ Sbjct: 62 EDNPDIVEFVQGECGYFIAYDNLFSTWIKQGNDFEISNVRDALSAFSRNINPAHKKVFDG 121 Query: 118 -FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 FD + +++L ++ + I V+ IYE+LI F + Sbjct: 122 IFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISNFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L VA Sbjct: 181 GKKAGEFYTPSEVSQLMSEIVAWHLQGR------EQIKIYDPTSGSGSLLIHIGQAVARR 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + P ++ + QEL+ T+ + +++R + D + G TL D Sbjct: 235 NGN---PDSIMYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWFD 286 Query: 291 R------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 +SNPP+ + W+ + RF G+ S F Sbjct: 287 TLENKEETYNPLFVDAVVSNPPYSQNWDPTDKEI--------DPRFSYGIAPKSKADYAF 338 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H L G IVL LF G E +IR+ L+EN I+AI+ LP ++F Sbjct: 339 LLHDLYHLRAD----GIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGLPANIF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-V 457 F T I T + +L ++ + +V +++A+ + K + ++I+D+ Sbjct: 392 FGTGIPTIVMVLRKKRDD---DRVLIVDASKHFIKD----GKNNKLQASDIKRIVDVVSN 444 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 +R KFSR++ + P + D Sbjct: 445 NRTVPKFSRLVSIDEIRANDYNLNIPRYVDSSEDAE 480 >gi|260887979|ref|ZP_05899242.1| type I restriction-modification system, M subunit [Selenomonas sputigena ATCC 35185] gi|330838539|ref|YP_004413119.1| type I restriction-modification system, M subunit [Selenomonas sputigena ATCC 35185] gi|260862230|gb|EEX76730.1| type I restriction-modification system, M subunit [Selenomonas sputigena ATCC 35185] gi|329746303|gb|AEB99659.1| type I restriction-modification system, M subunit [Selenomonas sputigena ATCC 35185] Length = 525 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 113/498 (22%), Positives = 192/498 (38%), Gaps = 72/498 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52 + A L IW+ A DL G DF + +L R + L E Sbjct: 3 NKKEMERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTNYLNREAQEAGD 62 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 +A L+ + + E+ V+ GY F SE + S T NL + N + Sbjct: 63 AAFDYAALSDEEAETERENLVEEQGY-FILPSELFANVRKSAPTNENLNETLEKVFHNIE 121 Query: 113 -------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDR 153 +FED D +S +L E+ L K+ ++L H Sbjct: 122 ASATGTASENDLAGLFEDLDVNS--NKLGATVKERNAKLVKLLDGIGEMQLGHYRDNTID 179 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + ++ TP++V L T L + + K +YDP Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTRLTVIGKARVNK--------VYDPA 231 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + K +GQE+ T+ +C M + + D Sbjct: 232 CGSGSLLLKFAKIL------GKENVRNGFYGQEINITTYNLCRINMFLHDINFD-----D 280 Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I +G TL+ + F +SNPP+ +W ++ + RF P L Sbjct: 281 FDIARGDTLTDPQHDAFEPFEAIVSNPPYSIRWAGKENPL-----LINDPRFAPAGVLAP 335 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F++H L G AAIV ++ G A E +IR++L++++ ++A+ Sbjct: 336 PSKADFAFILHALAWL----AANGTAAIVCFPGIMYRGGA---EKKIRQYLIDSNFVDAV 388 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LFF T+IAT + +L K + I+A+ + N + + Sbjct: 389 IQLPDNLFFGTSIATCIMVLKKSKADTTT---LFIDASKECIKVTN----NNKLTQENIE 441 Query: 451 QILDIYVSRENGKFSRML 468 IL +Y R + + Sbjct: 442 HILQMYTDRADVAHTVRC 459 >gi|156973426|ref|YP_001444333.1| type I restriction-modification system, methyltransferase subunit [Vibrio harveyi ATCC BAA-1116] gi|156525020|gb|ABU70106.1| hypothetical protein VIBHAR_01115 [Vibrio harveyi ATCC BAA-1116] Length = 862 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 104/515 (20%), Positives = 199/515 (38%), Gaps = 64/515 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLAF 62 + LA IW++A + + ++ IL F + L L + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALT 61 Query: 63 GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117 ++ + GY Y+ + + +N+ +++F + K +FE Sbjct: 62 EDDTETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 121 Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I + + V+ IYE+LI +F + Sbjct: 122 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGY-DVLGYIYEYLIEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + + + +YDPT G+G L + + V Sbjct: 181 GKKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSV--- 231 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + K + + QEL+ T+ + +++R + D + G TL D Sbjct: 232 AKYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITT-----RNGDTLEDDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ +KW+ + + RF GL + FL Sbjct: 287 ESNPQESYQPLYVDAVVSNPPYSQKWDPENKENDPR-----YARF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G IVL LF G E EIR+ L+EN+ I+AI+ LP ++FF Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIENNHIDAIIGLPANIFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + +L K + V +++A+ + K + D ++I+D + R Sbjct: 393 GTGIPTVILVL---KQKRENNDVLIVDASKHFVKE----GKNNKLQDSDIKRIIDAVIHR 445 Query: 460 ENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 ++ KFS+++ +T + P + Sbjct: 446 QDNAKFSKVVSKKTIQQNEYNLNIPRYVDSSPAAE 480 >gi|299142935|ref|ZP_07036061.1| type I restriction-modification system, M subunit [Prevotella oris C735] gi|298575551|gb|EFI47431.1| type I restriction-modification system, M subunit [Prevotella oris C735] Length = 518 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 112/556 (20%), Positives = 210/556 (37%), Gaps = 75/556 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------SA 54 M+E L + +W+ A L G+ +DF L F + L +E Sbjct: 1 MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANDALVDDD 58 Query: 55 VREKYLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTL-----GSTNTRNNLESY 103 V K L + D+E + + ++ + S++ N LE Sbjct: 59 VTFKELWAMEKDTDIEELQESVKTECIENIGYFIEPSFLFSSVIESIKKKENILPILERS 118 Query: 104 IASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151 + D+ + EDF D +L +K L+ + I+ + Sbjct: 119 LKRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQ 178 Query: 152 DRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + + YE++I +F + + A +F TP++V + ++ +R +Y Sbjct: 179 EIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHA--------RLRNVY 230 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L A I GQE P T+ + ML+ ++ Sbjct: 231 DPTCGSGSLLLRA----------AGIGHANEIFGQEKNPTTYNLARMNMLLHGIKF---- 276 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + I+ G TL D F +F ++NPPF +W +++ + GR L Sbjct: 277 -SNFRIENGDTLEADAFDDTQFDAVVANPPFSAEWNAADKF-NNDYRFSKAGR----LAP 330 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389 F++H+ L N GG A V LF G A E IRR+L+E + ++A Sbjct: 331 RKTADYAFILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDA 383 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP ++F+ T+I T + + RK + + I+A+ + I+ + + Sbjct: 384 IIGLPANIFYGTSIPTCILVF--RKCRKEDDSILFIDASKDFEKIKT----QNKLRPQHI 437 Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++I+D Y R+ + +S + + P + ++ + ++L Sbjct: 438 QKIVDTYRDRKEIEKYSHLATLEEIAENDYNLNIPRYVDTFEEEEPIDIHAVMKDIKELE 497 Query: 509 PLHQSFWLDILKPMMQ 524 +I + + Sbjct: 498 AKRADLDKEIEGYLKE 513 >gi|265763432|ref|ZP_06092000.1| type I restriction-modification system, M subunit [Bacteroides sp. 2_1_16] gi|263256040|gb|EEZ27386.1| type I restriction-modification system, M subunit [Bacteroides sp. 2_1_16] Length = 517 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 105/558 (18%), Positives = 214/558 (38%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 M+E L + +W+ A L G+ +DF L F + L +E + Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALADDD 58 Query: 58 --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + + D + A ++ ++ S++ N LE + Sbjct: 59 ITFKELWETDDADAIELQEEAKNQCLENIGYFIEPQFLFSSVIEAIKRKENILPMLERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + +DF D +L +K L+ + I + + Sbjct: 119 KRIEDSTLGQDSEDDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDINFGLEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGH--------QRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A + +GQE P T+ + ML+ ++ Sbjct: 231 PTCGSGSLLLRAASIGNAVD----------IYGQEKNPTTYNLARMNMLLHGIKF----- 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + ++AI Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + + +K + + I+A+ + ++ + + + + Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++ Y R+ + +S + + + P R ++ ++A + K Sbjct: 438 KIVETYRDRKEIEKYSHLASLQEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 AKRAELDKEIEVYLKELG 514 >gi|323971897|gb|EGB67121.1| type I restriction-modification system [Escherichia coli TA007] Length = 518 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 116/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + + Y A Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSICYAALD 64 Query: 64 G---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 ++ + ++ GY Y S+ + NT + L + + S Sbjct: 65 DGIITDDIKDDAIRTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D +I+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEKIMQVFSS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|309750368|gb|ADO80352.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae R2866] Length = 514 Score = 276 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 184/489 (37%), Gaps = 64/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MVAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESIN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y I + Y L + N +N +E+ Sbjct: 61 YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + + I F DF +T RL +K L + K + ++ + + Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + ++ K +YDP G+G Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D +I Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL + F + F +SNPP+ KW D RF P L S Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L +G GRAAIV + A E +IR++L++N+ ++A++AL Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRSGA---EQKIRQYLVDNNYVDAVIALAP 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QIL + Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 442 FADKEDVPH 450 >gi|110003975|emb|CAK98315.1| hsdm protein typeIrestriction enzyme [Spiroplasma citri] Length = 509 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 110/546 (20%), Positives = 205/546 (37%), Gaps = 93/546 (17%) Query: 1 MT--EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE- 57 MT E L + +W + L G + +++ + IL R L ++ + Sbjct: 1 MTTHEKQNVQQQLFSKLWDISNTLRGTMEPSEYKEYILGLIFYRYLSDNVQSIIEKDLKI 60 Query: 58 -------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---------TRNNLE 101 N LE +Y EY + + R E Sbjct: 61 EGIDYQTALTDEKYRNDFLEVLYDNDSAGYYIEPEYLWQEIINKINIGKFDIFLLRKAFE 120 Query: 102 SYIA---SFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151 I +S + +F+ D S ++L EK+ ++ K+ + E+ Sbjct: 121 KLIESTIGYSSEKEFENLFDSVDLDS--SKLGKTEAEKSKIIAKVMLKINESEI------ 172 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 ++ + YE+LI +F SE + A +F TP+ V L L+ + I+T+YD Sbjct: 173 -DILGDAYEYLISKFASESVKAAGEFYTPQPVSKLLAKLV--------SQGKTEIKTVYD 223 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L + I +GQEL+ ++ + M++ L+ + Sbjct: 224 PTCGSGSLLLRVYKELK----------IGHLYGQELKTNSYNIARMNMMLHGLKYNK--- 270 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLP 329 NI G TL D F G+ F ++NPP+ W ++ + E RF L Sbjct: 271 --FNIYNGDTLEDDGFKGQEFEIIVANPPYSSHWSANQKFLSDE-------RFSAYGKLA 321 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 + F+ ++ KL + G A V+ LF G A E IR++++E + I+ Sbjct: 322 PKTKADFAFIQNMIYKL----SDNGVMAAVIPRGILFRGNA---ELIIRKYMIEKNWIDN 374 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I++LP ++F+ T+I T + ++ K + I+A+ + +G K + D Sbjct: 375 IISLPVNMFYGTSIPTCIIVMKKCK---IDNSILFIDASKEFQ---KQGNK-NTLTDKNI 427 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I++I+ R+ + + + L+ + + Sbjct: 428 IKIINIFNKRK---------NIDKFSNLVDIEIIKENDYNLNIARYVDNTEEKEIINIKA 478 Query: 510 LHQSFW 515 L + Sbjct: 479 LQDNLI 484 >gi|170682082|ref|YP_001744301.1| type I restriction-modification system, M subunit [Escherichia coli SMS-3-5] gi|170519800|gb|ACB17978.1| type I restriction-modification system, M subunit [Escherichia coli SMS-3-5] Length = 523 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|89093018|ref|ZP_01165969.1| putative type I restriction-modification system, methyltransferase subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92] gi|89082668|gb|EAR61889.1| putative type I restriction-modification system, methyltransferase subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92] Length = 931 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 119/588 (20%), Positives = 228/588 (38%), Gaps = 72/588 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63 + LA IW++A + + ++ IL F + L + + A Sbjct: 14 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIEQGMTPDDIKALA 73 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117 + + +++ F Y+ + + +N+ +++F + K +FE Sbjct: 74 EDDTETVDYIRREKGFFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 133 Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I + + V+ IYE+LI +F + Sbjct: 134 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGY-DVLGYIYEYLIEKFAANA 192 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + + + +YDPT G+G L + + V Sbjct: 193 GKKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSV--- 243 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 H K + + QEL+ T+ + +++R + D + G TL D Sbjct: 244 AKHAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITT-----RNGDTLEDDWPYFD 298 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ +KWE + + RF GL + FL Sbjct: 299 ETNPQETYQPLYVDAVVSNPPYSQKWEPENKENDPR-----YARF--GLAPKTKADFAFL 351 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G IVL LF G E EIR+ L+EN+ I+AI+ LP ++FF Sbjct: 352 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIENNHIDAIIGLPANIFF 404 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + +L K + V +++A+ + K + D ++I D ++R Sbjct: 405 GTGIPTVILVL---KQKRENNDVLIVDASKHFVKE----GKNNKLQDSDIKRITDAVINR 457 Query: 460 ENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFW 515 ++ KFS++ +T + P + A + I R+++ L + Sbjct: 458 QDNAKFSKVASKKTIQENEYNLNIPRYVDSSPAAETWDIHATMLGGIPNREIAAL--KEY 515 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563 D L ++ ++ +E KS T+ + ++AFI A Sbjct: 516 WDALPELLDALFTAKSSEYSELAVEKSQVQATIAL---HPQLLAFIQA 560 >gi|313204423|ref|YP_004043080.1| type II restrictioN-modification system, m subunit [Paludibacter propionicigenes WB4] gi|312443739|gb|ADQ80095.1| type I restriction-modification system, M subunit [Paludibacter propionicigenes WB4] Length = 546 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 114/567 (20%), Positives = 205/567 (36%), Gaps = 94/567 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLA----- 61 L +W A L G +F +L F +R L E + + + Y Sbjct: 6 QQQLGKTLWDIANQLRGSMNADNFRDYMLSFLFMRYLSDNYEDVAKKELGQDYPEVTSDI 65 Query: 62 -------------FGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLE----- 101 + + D+E F K + +Y S++ N E Sbjct: 66 LKKLKATSALEIWYNENAADIEEFEKQMRRKVHYVIQPKYLWSSIYEMARTQNGELLHTL 125 Query: 102 ----SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTV 150 YI SF + +F + + +S +L E+ L I + + Sbjct: 126 KKGFDYIENESFESTFQGLFSEINLNS--DKLGKTYEERNAELCNIITKI-EQGIVKFSK 182 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++ + YE LI +F ++ + A +F TP+ + + ++++ + + Sbjct: 183 DTDILGDAYEFLIGQFAADSGKKAGEFYTPQQISTILSSIVTLDSQNPAAGKKKKLDKVM 242 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 D CG+G L + N + G +GQE T+ + ML+ ++ Sbjct: 243 DLACGSGSLLLNVRNQLGKHGIGK-------IYGQEKNITTYNLARMNMLLHGVK----- 290 Query: 271 DLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 D +I G TL D F ++NPPF +WE + GE Sbjct: 291 DTEFHIHHGDTLLNDWDILNEMNPAKKMEFDAVVANPPFSLRWEPSEAM-------GEDF 343 Query: 323 RFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 RF GL S FL+H + L G AI+L LF G A E IR L Sbjct: 344 RFKNYGLAPKSAADFAFLLHGFHFLAQE----GTMAIILPHGVLFRGGA---EERIRTKL 396 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 L++ I+ ++ LP++LFF T I + +L K + V INA++ + + + + R Sbjct: 397 LKDGNIDTVIGLPSNLFFSTGIPVCILVLKKCK---KFDDVLFINASEYFEKGKRQNRLR 453 Query: 442 R--IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 + R+I++ Y R + RR+ + ++ + L+ + Sbjct: 454 DGEEGEPNDIRKIVETYQFRTEEER---------YSRRVSMEEIVKNDYNLNISRYVS-- 502 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQI 526 T + + + L + ++I Sbjct: 503 ---TAVTAKEIDLNAVNETLVDLEEKI 526 >gi|293189231|ref|ZP_06607954.1| type I restriction-modification system, M subunit [Actinomyces odontolyticus F0309] gi|292821694|gb|EFF80630.1| type I restriction-modification system, M subunit [Actinomyces odontolyticus F0309] Length = 526 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 111/502 (22%), Positives = 185/502 (36%), Gaps = 79/502 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----TRSAVREK----- 58 A L IW+ A DL G DF +L F R + L R A+ + Sbjct: 8 AELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTPE 67 Query: 59 ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIA------ 105 Y + + V F+ + + + NL ++ Sbjct: 68 EAAAFDYATLSNEDAEAARDGIVKEKGFFIRPSDLFGNVRAQAASDENLNETLSYAFRFI 127 Query: 106 -------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 + + +F+D D +ST +L ++ L KI + L Sbjct: 128 ENSARGSGSESDLRGLFDDVDVNST--KLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQID 185 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + +F TP++V + L LD + +YDP Sbjct: 186 AFGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALDGRSD--------VTRVYDPC 237 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L + GQE+ T+ +C M + + + Sbjct: 238 AGSGSLLLKFAKLL-------GPSSSRQYFGQEINLTTYNLCRINMFLHDVNF-----SN 285 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G TL++ + F +SNPP+ KW + + RF P L Sbjct: 286 FDIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVG-----KDDIALINDPRFAPAGVLAP 340 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S + F MH+ + L G AAIV L+ G A E +IRR+L+EN+ + A+ Sbjct: 341 KSKADLAFTMHMLHWLAED----GTAAIVEFPGVLYRGAA---EGKIRRYLVENNFVHAV 393 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP DLFF T IAT + +L + + V ++A+ EG K R + + ++ Sbjct: 394 IQLPPDLFFGTTIATCIIVLKKARPDHS---VLFVDASAECV---REGNKNR-LTAENQQ 446 Query: 451 QILDIYVSRENGKFSRMLDYRT 472 +IL + R+ L Sbjct: 447 RILFLVSERQAVDHVAALVSID 468 >gi|154490803|ref|ZP_02030744.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC 43184] gi|154088551|gb|EDN87595.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC 43184] Length = 862 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 103/500 (20%), Positives = 190/500 (38%), Gaps = 67/500 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP---TRSAVREKY 59 + LAN IW +A + + ++ IL + L L+ T + Sbjct: 2 NKQQLANKIWASANKMRSKIEANEYKDYILGLIFYKFLSDNEVNYLKSIGWTDEDIVTLV 61 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASF----SDNAK 112 + ++ + + S + +L + SF S N + Sbjct: 62 ENHEDQEAVMMMEYCRNNIGYFIEYKNLFGTWLKPNSEFSVADLSGALNSFDRLISPNYR 121 Query: 113 AIFED-FD-FSSTIARLEKAGL-----LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 ++E+ F + +++L + L + K I V+ +YE+LI Sbjct: 122 HVYENVFKTLQAGLSKLGENTTSQTRALKNLIKLIKDIPTDGS-QDYDVLGYVYEYLISN 180 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + A +F TP +V L + ++ + K +YDPT G+G L Sbjct: 181 FAANAGKKAGEFYTPHEVAILMSEIVAEHHKNKDKIE------IYDPTSGSGSLLITIGK 234 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 V G H + + + QEL+ T+ + +++R ++ D N + +L +D Sbjct: 235 SV---GRHIEDKNKVKYYAQELKENTYNLTRMNLVMRGIKPDNI-----NTRCADSLEED 286 Query: 286 LF---------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +SNPP+ ++W+ + ++ K+ G+ S Sbjct: 287 WPLQTDGGDIGKPLYVDAVVSNPPYSQQWDANDRELDARFKD-------YGVAPKSKADY 339 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG---SGESEIRRWLLENDLIEAIVAL 393 FL+H + L+ G IVL LF G A GE +IRR L+E + I+AI+ L Sbjct: 340 AFLLHELHHLKPD----GILTIVLPHGVLFRGDADENSEGEGKIRRNLIEKNNIDAIIGL 395 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P ++FF T I T + +L K V +I+A+ + K + + ++I Sbjct: 396 PANIFFGTGIPTLIMVL---KQHRDNDDVLIIDASKGFVKE----GKNNKLRECDIKRIA 448 Query: 454 DIYVSRENGK-FSRMLDYRT 472 D R+ +SR + Sbjct: 449 DTVRERKTIPGYSRTVSRDE 468 >gi|303252525|ref|ZP_07338688.1| putative type I restriction-modification systemmethyltransferase subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247274|ref|ZP_07529323.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648493|gb|EFL78686.1| putative type I restriction-modification systemmethyltransferase subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856247|gb|EFM88401.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 517 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 118/487 (24%), Positives = 200/487 (41%), Gaps = 69/487 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61 A L IW+ A ++ G DF + +L R + +E +++ + Sbjct: 5 QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64 Query: 62 FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107 NI L E +K GY Y S+ + + + ++ NL + + Sbjct: 65 DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123 Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160 S+N K +F DF +T RL +K L + K + ++ + + + YE Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI + + + +F TP++V L L L A+ K +YDP CG+G L Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A D GQE+ T+ + M + + D +I G Sbjct: 234 LQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGD 282 Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337 TL K F + F +SNPP+ KW D D RF P L S Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKSKADFA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++L +L Sbjct: 338 FILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +IL ++ Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFS 443 Query: 458 SRENGKF 464 + + + Sbjct: 444 DKADVDY 450 >gi|307249502|ref|ZP_07531490.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858495|gb|EFM90563.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 517 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 119/495 (24%), Positives = 204/495 (41%), Gaps = 70/495 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61 A L IW+ A ++ G DF + +L R + +E +++ + Sbjct: 5 QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64 Query: 62 FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107 NI L E +K GY Y S+ + + + ++ NL + + Sbjct: 65 DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123 Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160 S+N K +F DF +T RL +K L + K + ++ + + + YE Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI + + + +F TP++V L L L A+ K +YDP CG+G L Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A D GQE+ T+ + M + + D +I G+ Sbjct: 234 LQAKKQFDDHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGN 282 Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337 TL K F + F +SNPP+ KW D D RF P L S Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWIGDGDPT-----LINDERFAPAGVLAPKSKADFA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++L +L Sbjct: 338 FILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+IA + +LS KT+ K Q I+A+ ++ N + D+ +I+ ++ Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNELTDEHIAEIIKLFS 443 Query: 458 SRENGKF-SRMLDYR 471 + + +M+D + Sbjct: 444 DKADVDHLVQMVDNQ 458 >gi|300958237|ref|ZP_07170387.1| type I restriction-modification system, M subunit [Escherichia coli MS 175-1] gi|300315090|gb|EFJ64874.1| type I restriction-modification system, M subunit [Escherichia coli MS 175-1] Length = 518 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|150389394|ref|YP_001319443.1| type I restriction-modification system, M subunit [Alkaliphilus metalliredigens QYMF] gi|149949256|gb|ABR47784.1| type I restriction-modification system, M subunit [Alkaliphilus metalliredigens QYMF] Length = 858 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 119/607 (19%), Positives = 216/607 (35%), Gaps = 87/607 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------------RSA 54 ++ + +W+ A +L G + + +L + L T + Sbjct: 3 TSEEIKRRLWEGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETFRITAGVEKVTEKEL 62 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSD 109 V E A LE ++ +Y + EY N E + +F Sbjct: 63 VEEYIKAKKEYGEALEKMIQDV-LGYYVSPEYLYQIWLKDINDGNFEVQKVADSLNNFER 121 Query: 110 NA---------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155 + K +F T L E++ + + FS + + ++ Sbjct: 122 SIVSSGEVNDFKGLFSSSTLDLTDTALGSNLHERSNNIKALILLFSDLNMV-ALQKGDIL 180 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+LI +F E + A +F TP V + ++ I+++YDPT G Sbjct: 181 GDAYEYLIGQFAMESGKKAGEFYTPHRVSEVMAQIVA---------KTTEIKSIYDPTVG 231 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L H+ L +GQE T+ + +L+ + + Sbjct: 232 SGSLLLTVKKHL-----SKDRQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKMT----- 281 Query: 276 IQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 I+ G TL D +F + NPP+ + K RF G Sbjct: 282 IKNGDTLGNDWPEDPENPNEGVQFDAVVMNPPYSAQN------WNKAGLKVSDPRFEIGG 335 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S G FL+H L G IVL LF G S E EIR+ L++ + Sbjct: 336 TLPPDSKGDYAFLLHGLYHLGTK----GTMGIVLPHGVLFRG---SSEGEIRKKLIDKNQ 388 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+A++ LP++LF T I + IL +K V +I+A++ + + K+ ++ + Sbjct: 389 IDAVIGLPSNLFTNTGIPVAIIIL--KKNRNISDPVLMIDASNNFIKV----GKQNVLQE 442 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADI 502 QI+D+Y+S++ FS + + + P + + + A L I Sbjct: 443 RDIAQIVDVYISKDEIAGFSHLACLKEIIQNEYNMNIPRYVQSLEEDIAHDVDAHLFGGI 502 Query: 503 TWRKLSPLH--QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV-KASKSFIVA 559 ++ L ++L+ +++I P + + K + SK V Sbjct: 503 PAENINELKILHELVPEVLEQSIEEIRPGYVRLKNSIKEMTDTVLKHESILSLSKELKVE 562 Query: 560 FINAFGR 566 + Sbjct: 563 ITEYISK 569 >gi|300819089|ref|ZP_07099292.1| type I restriction-modification system, M subunit [Escherichia coli MS 107-1] gi|300528389|gb|EFK49451.1| type I restriction-modification system, M subunit [Escherichia coli MS 107-1] Length = 518 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|187477055|ref|YP_785079.1| type i restriction enzyme EcoR124II M protein [Bordetella avium 197N] gi|115421641|emb|CAJ48151.1| type i restriction enzyme EcoR124II M protein [Bordetella avium 197N] Length = 519 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 118/490 (24%), Positives = 190/490 (38%), Gaps = 66/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVRE 57 MT A+L IW A D+ G DF + +L R + A + Sbjct: 1 MT-SNEQRAALQRKIWDIANDVRGAVDGWDFKQYVLGALFYRFISENFIDYITGGDASMD 59 Query: 58 KYLAFGGSN---IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--- 111 + +K GY Y S+ ++ + NT NL + +A+ Sbjct: 60 YAAMPDNDENIAAAKDDAIKTKGYFIY-PSQLFVNVAANANTNENLNTDLANIFAAIEAS 118 Query: 112 -------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + I F DF +T RL +K L K+ K + ++ + + Sbjct: 119 ANGYPSERDIKGLFADFDTTSNRLGNTVKDKNDRLSKVLKRVAELDFGGFDASHIDLFGD 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + ++ K +YDP CG+G Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H GQE+ T+ + M + + D NIQ Sbjct: 231 SLLLQAKKHFDQHLIEDG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIQ 279 Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL + F K F +SNPP+ KW D RF P L S Sbjct: 280 LGNTLIEPHFGEDKPFDAIVSNPPYSVKWIGGDDPT-----LINDERFAPAGVLAPKSKA 334 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 335 DFAFVLHALNYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLA 387 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T IA + +L+ K + Q I+A+ L+ N ++ D QI+ Sbjct: 388 PNLFYGTTIAVNILVLAKNKKDTTT---QFIDASGLFKKETN----NNVLLDSHIEQIMA 440 Query: 455 IYVSRENGKF 464 ++ S++N Sbjct: 441 VFDSKDNVDH 450 >gi|319902373|ref|YP_004162101.1| type I restriction-modification system, M subunit [Bacteroides helcogenes P 36-108] gi|319417404|gb|ADV44515.1| type I restriction-modification system, M subunit [Bacteroides helcogenes P 36-108] Length = 515 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 111/485 (22%), Positives = 194/485 (40%), Gaps = 64/485 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----CALEPTRSAVREKYLA 61 L + IWK A ++ G DF + +L R + +E ++ ++ Sbjct: 5 KQRDELQSTIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTDYIEGGDDSINYANMS 64 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD----------- 109 I+++ F S+ ++ S NT NL + +A+ F+ Sbjct: 65 DDVITIEIKDDAIKTKGYFIYPSQLFVNIAKSANTNPNLNTDLAAIFNAIEGSANGYPSE 124 Query: 110 -NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162 + K +F DF +T RL EK L + K ++L + + YE L Sbjct: 125 HDIKGLFA--DFDTTSNRLGNTVEEKNKRLAAVIKGVECLDLGNFEDNKIDLFGDAYEFL 182 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + + + +F TP++V L L L ++ K +YDP CG+G L Sbjct: 183 ISNYAANAGKSGGEFFTPQNVSKLIAQLALSGQTSVNK--------IYDPACGSGSLLLQ 234 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A GQE+ T+ + M + + D +I G TL Sbjct: 235 AKKQFDAHLIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIALGDTL 283 Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339 + ++ F +SNPP+ W D RF P L S F+ Sbjct: 284 INPQYGDEKPFDAIVSNPPYSVNWVGSDDPT-----LINDDRFAPAGVLAPKSKADFAFV 338 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H + L + GRAAIV + G A E +IR++L++N+ +E +++LP +LF+ Sbjct: 339 LHALSYL----SARGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFY 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+IA + +LS KT+ K Q I+A+ + ++ D +I+D++ + Sbjct: 392 GTSIAVNILVLSKHKTD---TKTQFIDASG--EEFFKKETNNNVLTDRHIAKIIDLFNKK 446 Query: 460 ENGKF 464 E ++ Sbjct: 447 EPVEY 451 >gi|288457860|ref|YP_003422728.1| type I restriction-modification system, M subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|285026835|gb|ADC33925.1| type I restriction-modification system, M subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 515 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 112/489 (22%), Positives = 186/489 (38%), Gaps = 63/489 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 MT A+L IW A D+ G DF + +L R + A E Sbjct: 1 MT-AQAQRAALQRKIWDIANDVRGSVDGWDFKQYVLGTLFYRFISENFAAYIEAGDESID 59 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105 Y A + I + Y L + + N +ES Sbjct: 60 YAALSDNVITDDIKDDAIKTKGYFIYPSQLFANVADDANTNDSLNTDLARIFTAIESSAN 119 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 + + + I F DF +T RL EK L K+ K + ++ + + Sbjct: 120 GY-PSEQDIRGLFADFDTTSTRLGNTVTEKNSRLAKVLKRVAELDFGDFHNSQIDLFGDA 178 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP+ V L L + + K +YDP CG+G Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQKKVNK--------IYDPACGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A + GQE+ T+ + M + + D NIQ+ Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQR 279 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G TL++ F + F +SNPP+ KW D RF P L S Sbjct: 280 GDTLTQPHFQDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKAD 334 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L + GRAAIV + A E +IR++L++N+ +E ++AL + Sbjct: 335 FAFVLHALSYL----SAKGRAAIVCFPGIFYRDGA---EKKIRKYLVDNNYVETVIALAS 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T IA + +L+ KT +Q I+A+ + ++ D ++++I Sbjct: 388 NLFYGTTIAVTILVLAKNKTHAA---IQFIDASG--EEFFKKATNTNLMTDHHIARVIEI 442 Query: 456 YVSRENGKF 464 + +E+ Sbjct: 443 FDRKEDVDH 451 >gi|215489628|ref|YP_002332059.1| predicted type I restriction-modification enzyme M subunit [Escherichia coli O127:H6 str. E2348/69] gi|215267700|emb|CAS12158.1| predicted type I restriction-modification enzyme M subunit [Escherichia coli O127:H6 str. E2348/69] Length = 518 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 120/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGNFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTNVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|295136495|ref|YP_003587171.1| type I restriction-modification system DNA methylase [Zunongwangia profunda SM-A87] gi|294984510|gb|ADF54975.1| type I restriction-modification system DNA methylase [Zunongwangia profunda SM-A87] Length = 540 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 93/492 (18%), Positives = 180/492 (36%), Gaps = 69/492 (14%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58 M + T A + +WK A +L G + ILP L+ + E + +++K Sbjct: 1 MAKNTTKADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISERYEMRKDEIKKKL 60 Query: 59 ------YLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---------- 99 Y + + ++ + + + L ++N Sbjct: 61 NDQTSDYYTLDEEEQNYVLEDPDEYLSKNVYIIPEKATFQYLQDNAEQDNIKVLVDEAFD 120 Query: 100 -LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSN 157 L+ +A+ + K I S + A + + S +L ++ Sbjct: 121 ILDETLAANRPDLKGILPRIFVKSQLT----AKQVAGLINLLSNPKLSEKENPDSDILGR 176 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+ I +F GA F TP +V L L+ ++D CG+G Sbjct: 177 VYEYYIGKFAIAEGSGAGQFFTPGSIVRLLVELI-----------EPYEGKIFDAACGSG 225 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 G ++ + G + +GQE T +C + +R L D ++ Sbjct: 226 GMFVQSLKFLQAHGGD---KKNISIYGQERYDGTLRLCKMNLALRDLSFD--------VR 274 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSM 336 G +L +D F + + + NPPF +D G F + + Sbjct: 275 LGDSLLQDKFPDLKADFIIVNPPFNVSQWHPEDLPENDPRLFGPKEEF----TTDGNANY 330 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 +++ + L G AA+V+++ + + GE +R+ ++E ++++ IV LP Sbjct: 331 MWMQTFWHHLSDK----GTAAVVMANGAMTSNNK--GEKNVRQLMVEKNMVDCIVRLPDK 384 Query: 397 LFFRTNIATYLWILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 LF T I ++ILS + +R G++ I+ + + T K R+ N+ Sbjct: 385 LFLTTGIPACIFILSKNRDGKDGIHRKRTGEILFIDTSKMGTMESR---KLRVFNEQDIN 441 Query: 451 QILDIYVSRENG 462 +I D Y + N Sbjct: 442 KITDTYHAWRND 453 >gi|300821375|ref|ZP_07101523.1| type I restriction-modification system, M subunit [Escherichia coli MS 119-7] gi|331680405|ref|ZP_08381064.1| type I restriction-modification system, M subunit [Escherichia coli H591] gi|300526264|gb|EFK47333.1| type I restriction-modification system, M subunit [Escherichia coli MS 119-7] gi|331071868|gb|EGI43204.1| type I restriction-modification system, M subunit [Escherichia coli H591] Length = 518 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|323182016|gb|EFZ67427.1| type I restriction-modification system, M subunit [Escherichia coli 1357] Length = 518 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 120/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVATKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D +I+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEKIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|261491601|ref|ZP_05988184.1| putative type I restriction-modification system methyltransferase subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494961|ref|ZP_05991430.1| putative type I restriction-modification system methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309370|gb|EEY10604.1| putative type I restriction-modification system methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312727|gb|EEY13847.1| putative type I restriction-modification system methyltransferase subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 515 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 125/550 (22%), Positives = 210/550 (38%), Gaps = 67/550 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63 A L IW+ A ++ G DF + +L R + E Y A+ Sbjct: 5 QQRAELHRQIWQIANEVRGAVDGWDFKQYVLGSLFYRFISENFSAYIEQGDESIDYAAYS 64 Query: 64 GSNIDL----ESFVKVAGYSFYNTSEY----------SLSTLGSTNTRNNLESYIASFSD 109 ID E +K GY Y + + + + + ++E+ F Sbjct: 65 DEEIDAFGIKEDAIKSKGYFIYPSQLFKNVVKNANTNNNLNIELADIFADIEASAVGFDS 124 Query: 110 NAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162 K I F DF + RL +K L + K + + + YE+L Sbjct: 125 E-KDIKGLFADFDTKSNRLGNTVEDKNKRLAAVLKGVESLNFGDFAENQIDLFGDAYEYL 183 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + S + +F TP++V L L L A+ K +YDP CG+G L Sbjct: 184 ISNYASNAGKSGGEFFTPQNVSKLIAQLALYGQSAVNK--------IYDPACGSGSLLLQ 235 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A D GQE+ T+ + M + + D +I+ G TL Sbjct: 236 AKKQFDDHLIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----HIELGDTL 284 Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339 + F +SNPP+ KW D RF P L S F+ Sbjct: 285 INPKLKDDKPFDAIVSNPPYSIKWIGSDDPT-----LINDERFAPAGILAPKSKADFAFI 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H N L + GRAAIV + A E +IR++L+E +++E+++AL +LF+ Sbjct: 340 LHALNYL----SAKGRAAIVTFPGIFYRSGA---EQKIRQYLIEQNVVESVIALSANLFY 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+IAT + +LS KT+ K Q I+A+DL+ N ++ D+ QIL ++ + Sbjct: 393 GTSIATNILVLSKHKTD---TKTQFIDASDLFKKETN----NNVLTDEHIAQILKLFADK 445 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + + F++ +D R + + + + E + RK + Sbjct: 446 ADVEHFAKSVDNRQIAENEYNLAVSSYVEAKDTREVINITELNKEIRK-TVAKIDRLRAD 504 Query: 519 LKPMMQQIYP 528 + ++ +I Sbjct: 505 IDAIVAEIEQ 514 >gi|302668597|ref|YP_003833045.1| type I restriction modification system M subunit HsdM [Butyrivibrio proteoclasticus B316] gi|302397561|gb|ADL36463.1| type I restriction modification system M subunit HsdM [Butyrivibrio proteoclasticus B316] Length = 531 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 103/583 (17%), Positives = 208/583 (35%), Gaps = 88/583 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------PTRSAV 55 + L +W A+ L G ++ +L + L + Sbjct: 4 SKDLLAVLWSGADVLRGKMDANEYKTYLLGLVFFKYLSDSYLAKVYDLLNDEEPENLDDA 63 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE-SYIASFSDNAKA 113 ++ Y S+ ++ Y + +++ + NN + S + + Sbjct: 64 QKAYEEAMKSDDSEALLEELKDSLHYTLDPDLTYTSILNAAKNNNFNREKLQSAFNRIQE 123 Query: 114 IFEDFD--FSST---IARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 E F+ F+ RL + + K +L V+ N YE+LI Sbjct: 124 SDELFNSLFADVDLYSNRLGTGDTKQSATIADVIKVLEDADLIHAKGD--VLGNAYEYLI 181 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 +F SE + A +F TP + + + + +YDP G+G + Sbjct: 182 GQFASETGKKAGEFYTPHGPAQILCRIAMLGQEE------KKGLQVYDPCMGSGSLMLSC 235 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 M++ + P + +GQEL P T+ + M + + + +++++ G TL Sbjct: 236 MHYSKE-------PDYIKYYGQELMPSTYNLARMNMFLHGVLPE-----NQHLRNGDTLD 283 Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 D T + F NPP+ W + + E G L S FL+H Sbjct: 284 ADWPTDEETEFDVVTMNPPYSANWSAAEGFKQDERFMDYGGV----LAPKSKADYAFLLH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L+ G AIVL LF G E IR LL+N I A++ LP+++F+ T Sbjct: 340 GFYHLKP----NGTMAIVLPHGVLFRGA---SEGAIREILLKNGSIYAVIGLPSNMFYNT 392 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + +L + V I+A+ + + K+ ++ ++ +L++Y +R++ Sbjct: 393 SIPTCIIVLKKHREGR---DVLFIDASQHFEKEK----KQNVMKEEHIDHVLELYKNRQS 445 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 + + +++ + + + ++ + + LK Sbjct: 446 VE---------------------KEAYLASFEDIEKNDFNLNIPRYVDTSEEEEQIDLKA 484 Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 + ++ +KE+ S ++ S I A + Sbjct: 485 LSSELK---NTNKEIKEANTSLLGMMNELVFSSDDIKAAMTEL 524 >gi|307245102|ref|ZP_07527195.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254057|ref|ZP_07535904.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258513|ref|ZP_07540250.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853991|gb|EFM86203.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862982|gb|EFM94929.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867417|gb|EFM99268.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 515 Score = 275 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 119/487 (24%), Positives = 199/487 (40%), Gaps = 69/487 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61 A L IW+ A ++ G DF + +L R + +E +++ + Sbjct: 5 QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64 Query: 62 FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107 NI L E +K GY Y S+ + + + ++ NL + + Sbjct: 65 DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123 Query: 108 SDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160 S+N I E F DF +T RL +K L + + +G+ + + + YE Sbjct: 124 SEN--DIKELFADFDTTSNRLGNTVEDKNKRLTAVLQGVAGLPFGRFEDNQIDLFGDAYE 181 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI + + + +F TP++V L L L A+ K +YDP CG+G L Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A D GQE+ T+ + M + + D +I G Sbjct: 234 LQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGD 282 Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337 TL K F + F +SNPP+ KW D D RF P L S Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWVGDGDPT-----LINDERFAPAGVLAPKSKADFA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++L +L Sbjct: 338 FILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +IL ++ Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFG 443 Query: 458 SRENGKF 464 + + Sbjct: 444 DKADVDH 450 >gi|239621716|ref|ZP_04664747.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515591|gb|EEQ55458.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 855 Score = 275 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 107/497 (21%), Positives = 186/497 (37%), Gaps = 70/497 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----CALEPTRSAVREKYLAF 62 + LA IW++A + + ++ IL F + L L + Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIARLRAEDWGAEDLKGLD 61 Query: 63 GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113 ++ + GY YN + T ++ +++F N Sbjct: 62 ENDAETVQYVRDLCGYFISYNNLFSTWIASQGDFTIADVRDALSAFERNIDPARKRVFVG 121 Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IF+ + +++L ++ + + I + IYE+LI F S Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAVRDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + + +YDPT G+G L VA Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 233 RRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284 Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + +SNPP+ + WE + GE RF G+ S Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L G AIVL LF G E IRR L+EN I+AI+ LP + Sbjct: 337 AFLLHDLYHLRDD----GIMAIVLPHGVLFRGGE---EGAIRRNLVENHHIQAIIGLPAN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T I T + +L + + V +++A+ +T K + ++I+D Sbjct: 390 IFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFTKE----GKNNKLRASDIKRIVDAV 442 Query: 457 -VSRENGKFSRMLDYRT 472 +R+ KFSR++ Sbjct: 443 TGNRDIDKFSRLVSIDE 459 >gi|306815513|ref|ZP_07449662.1| type I restriction-modification system DNA-methyltransferase subunit M [Escherichia coli NC101] gi|305851175|gb|EFM51630.1| type I restriction-modification system DNA-methyltransferase subunit M [Escherichia coli NC101] Length = 518 Score = 275 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 118/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + + Y A Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSICYAALD 64 Query: 64 G---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 ++ + ++ GY Y S+ + NT + L + + S Sbjct: 65 DGIITDDIKDDAIRTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|317011670|gb|ADU85417.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori SouthAfrica7] Length = 817 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 120/597 (20%), Positives = 219/597 (36%), Gaps = 92/597 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFDF 120 N + G FY E L+ G + L IA +D K + DF Sbjct: 45 AKNDPDSDIIVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAEQNDLLKGAIDSVDF 100 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAE 175 + +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 NDN-TKLGEGKAMMDTLSNLIKIFANLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKG 159 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V L + +T+YDPTCG+G L A + + G Sbjct: 160 QFYTPSEVSL------LLSLLLEIDGNTRQDKTIYDPTCGSGSLLLKASSLAGENG---- 209 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG---- 289 L +GQE + T A+C M++ + +I +G STLS F Sbjct: 210 ----LTIYGQEKDNSTTALCKMNMVLHN-------SATADIAKGGSSTLSNPHFLENGML 258 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346 K F Y ++NPPF K D +++ + K + RF G P +G FL+H+ L Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVIDDNFNRFEDGTPPEKNGDFAFLLHIIKSL 318 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ A++L LF G A E IR+ +L I+ ++ L +LF+ T+I Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGVIRKNILTKGYIKGVIGLAPNLFYGTSIPAC 371 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + +L R+G V +I+A+ + + +G K R + + ++++D + +++ + Sbjct: 372 VIVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFKAKKEIPYYS 426 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + + ++ + ++ + Q D+ + Sbjct: 427 KM---------------------VSLEEISANDYNLNIPRYIVAEQELEKDLFALINSHK 465 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 466 ANYLPKNEIEAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKDLITESLEYRA 522 >gi|307260748|ref|ZP_07542437.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869587|gb|EFN01375.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 516 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 118/487 (24%), Positives = 202/487 (41%), Gaps = 69/487 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61 A L IW+ A ++ G DF + +L R + +E +++ + Sbjct: 5 QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64 Query: 62 FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107 NI L E +K GY Y S+ + + + ++ NL + + Sbjct: 65 DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123 Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160 S+N K +F DF +T RL +K L + K + ++ + + + YE Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI + + + +F TP++V L L L A+ K +YDP CG+G L Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A D GQE+ T+ + M + + D +I G+ Sbjct: 234 LQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGN 282 Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337 TL K F + F +SNPP+ KW D D RF P L S Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWIGDGDPT-----LINDERFAPAGVLAPKSKADFA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F++H+ + L + GRAAIV + G A E +IR++L++N+ +E +++L +L Sbjct: 338 FILHVLSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +IL ++ Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFS 443 Query: 458 SRENGKF 464 + + + Sbjct: 444 DKADVDY 450 >gi|300214622|gb|ADJ79038.1| Type I restriction-modification system methylation subunit [Lactobacillus salivarius CECT 5713] Length = 529 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 108/481 (22%), Positives = 191/481 (39%), Gaps = 71/481 (14%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRSAVREKYLAF 62 +L + A L ++ L + L + L ++ E+ Sbjct: 7 TLERSLDNAANVLRSKMDANEYKNYTLGTIFYKYLSDSMLYYVAELLEEKNISLEEAQKL 66 Query: 63 GGSNIDLESFVKVAGYSF------YNTSEYSLSTLGS-----TNTRNNLESYIASFSDNA 111 N D + ++ F NT L ++ + + + S I S Sbjct: 67 YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNS-IESQGKEF 125 Query: 112 KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + +F+D+D S RL + + ++ +E+ P+ + N YE+LI++F Sbjct: 126 EGLFDDYDLYSK--RLGNTAQKQSDTISEVLSAIGKLEIV--KTPEDTLGNAYEYLIKQF 181 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 SE + A +F TP+ V L L L D T+YDPT G+G L + + Sbjct: 182 ASESGKKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKY 235 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V + + GQE+ T+ + M++ ++ +++ ++ TL +D Sbjct: 236 V-------EHSERITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDW 283 Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342 + F + NPP+ KW + + RF LP S FL+H Sbjct: 284 PVEEITNFDAVVMNPPYSHKWSANAGF-------KDDPRFSAYGVLPPKSKADYAFLLHG 336 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L+ G AIVL LF G A E +IR+ LLEN I+A++ LP +LF+ T+ Sbjct: 337 YYHLKHS----GVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTS 389 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 I T + +L K + V I+A+ + ++ + + D+ +IL Y R++ Sbjct: 390 IPTTIVVLKKDKQDR---DVLFIDASKNFKKVKT----QNELRDEDVEKILTTYKERKDI 442 Query: 463 K 463 Sbjct: 443 D 443 >gi|187736904|ref|YP_001816642.1| HsdM [Escherichia coli 1520] gi|172051486|emb|CAP07828.1| HsdM [Escherichia coli] Length = 520 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 120/483 (24%), Positives = 196/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 7 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 67 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + ++ K +YDP G+G L Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTSVNK--------IYDPAAGSGSLLL 235 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + GQE+ T+ + M + + D +I+ G+T Sbjct: 236 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445 Query: 459 REN 461 +E+ Sbjct: 446 KED 448 >gi|225076051|ref|ZP_03719250.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens NRL30031/H210] gi|224952611|gb|EEG33820.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens NRL30031/H210] Length = 871 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 111/488 (22%), Positives = 192/488 (39%), Gaps = 59/488 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVREKYLAFGG- 64 + LA IW++A + + ++ IL F + L LE EK Sbjct: 2 NKQQLAAKIWQSANKMRSKIEANEYKDYILGFIFYKFLSDKLEKFALEQGLEKSNFADEL 61 Query: 65 ---SNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116 + + + GY Y + GS ++ + +++FS N +F+ Sbjct: 62 TESNGELVNHVKRNLGYFISYEHLFSTWLAQGSDFNIAHVRTAMSAFSRNIADNYTAVFD 121 Query: 117 DF--DFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEV 170 S +++L + + F I P V+ IYE+LI F + Sbjct: 122 GIFKTLESGLSKLGDTAVSQTNAVKDLFVLIADIPMDGKQGYDVLGFIYEYLISMFAANA 181 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ D + ++YDPT G+G L + + VA Sbjct: 182 GKKAGEFYTPHEVSLLMSEIIADHLKDREEI------SIYDPTSGSGSLLINIGHSVAKH 235 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDLFT 288 + + QEL+ T+ + +++R + L NI + TL D Sbjct: 236 LKSA---DSIKYYAQELKENTYNLTRMNLVMRGI-------LPSNIFTRNADTLEDDWPL 285 Query: 289 GKRFHY---CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 Y +SNPP+ + W + +K RF G+ + FL+H Sbjct: 286 EGEPLYLDAVVSNPPYSQPWNPKDKEGDIRYK-----RF--GVAPQAKADFAFLLHDLFH 338 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G IVL LF G E +IR+ L+E + I+AI+ LP ++FF T I T Sbjct: 339 LKPD----GIMTIVLPHGVLFRGGE---EEKIRKNLIEYNHIDAIIGLPANIFFGTGIPT 391 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464 + +L + E R V +I+A+ + + K + ++I+D R KF Sbjct: 392 IIIVL---RQERERNDVLMIDASKHFIKV----GKNNHLQASDIKRIVDCVTHRRELPKF 444 Query: 465 SRMLDYRT 472 SR++ Sbjct: 445 SRIVPKAE 452 >gi|18202542|sp|Q47163|T1MP_ECOLX RecName: Full=Type I restriction enzyme EcoprrI M protein; Short=M.EcoprrI gi|450688|emb|CAA53205.1| hsdM gene of EcoprrI [Escherichia coli] Length = 520 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 7 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 67 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 235 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 236 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445 Query: 459 REN 461 +E+ Sbjct: 446 KED 448 >gi|315652290|ref|ZP_07905282.1| type I restriction-modification system DNA-methyltransferase [Eubacterium saburreum DSM 3986] gi|315485413|gb|EFU75803.1| type I restriction-modification system DNA-methyltransferase [Eubacterium saburreum DSM 3986] Length = 525 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 113/494 (22%), Positives = 192/494 (38%), Gaps = 71/494 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKY 59 + A L IW A+D+ G DF + IL R + + ++ Sbjct: 6 NRESKQRAELHRKIWAIADDVRGAVDGWDFKQYILGNLFYRFISENITEFFNKAEHEAGD 65 Query: 60 LAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTR--------NNLESYIA 105 AF + I E + V F+ + + N+ + I Sbjct: 66 TAFDYAKISDEEADRDFRPGTVEDKGFFILPSQLFENVVANAGNNENLNTDLANIFNAIE 125 Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153 + + K +F+ D +T RL EK L I K + I+ + D Sbjct: 126 GSAIGFLSEEAIKGLFK--DLDTTSDRLGATVVEKNKRLCDILKGIAEIDFNDFQSNDID 183 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+LI + S + +F TP+ V L L++D ++ K +YDPT Sbjct: 184 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTSINK--------VYDPT 235 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G + + GQE+ + M + + + + Sbjct: 236 CGSGSLILQMKKQFEEHIIEEG------FFGQEINMTNFNLARMNMFLHNVNYN-----N 284 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I++G TL L ++ F +SNPP+ KW D D RF P L Sbjct: 285 FSIKRGDTLLNPLHNDEKPFDAIVSNPPYSIKWVGDGDPT-----LINDERFAPAGKLAP 339 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F+MH + L GRAAIV + A E IR++L++N+ I+ + Sbjct: 340 KSYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---EKTIRQYLVDNNFIDCV 392 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LFF T+IAT + +++ KTE KV I+A+ + N ++ + Sbjct: 393 IQLPENLFFGTSIATCVLVMAKNKTE---NKVLFIDASKEFKKETN----NNVLEEKNIE 445 Query: 451 QILDIYVSRENGKF 464 IL+ + R++ ++ Sbjct: 446 SILNTFRERKDKEY 459 >gi|15646013|ref|NP_208194.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 26695] gi|2314576|gb|AAD08446.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 26695] Length = 817 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 122/567 (21%), Positives = 220/567 (38%), Gaps = 76/567 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G + L IA +D K + + DF+ Sbjct: 45 ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIADQNELKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMMDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L + +++YDP CG+G L A + + G Sbjct: 160 FYTPSEVSL------LSSLLLGIDANTRQDKSIYDPACGSGSLLLKASSLAGEKG----- 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290 L +GQE + T A+C M++ + +I +G STLS LFT + Sbjct: 209 ---LTIYGQEKDISTTALCRMNMILHN-------SATADIAKGGSSTLSNPLFTTENGML 258 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + +L R+G V +I+A+ + + +G K R + + ++++D + + + +S Sbjct: 372 VIVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNAYKEIPYYS 426 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKT----GLARLEADITWRKLSPLHQSFWLDILKP 521 +M+ + P ++ + L K + + + K Sbjct: 427 KMVSLEEISANDYNLNIPRYIAAKPESEKDLFALINSHKASYLPKNEIKAYAPYFQVFKE 486 Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTL 548 + ++ ES+ + K L Sbjct: 487 LKNTLFKKSDKESYYALKTECENIKEL 513 >gi|293417767|ref|ZP_06660389.1| type I restriction-modification system [Escherichia coli B185] gi|291430485|gb|EFF03483.1| type I restriction-modification system [Escherichia coli B185] Length = 518 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 119/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D +I+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEKIMQVFAS 443 Query: 459 REN 461 +++ Sbjct: 444 KKD 446 >gi|309797883|ref|ZP_07692264.1| type I restriction-modification system, M subunit [Escherichia coli MS 145-7] gi|308118491|gb|EFO55753.1| type I restriction-modification system, M subunit [Escherichia coli MS 145-7] Length = 520 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 7 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 67 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 235 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 236 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445 Query: 459 REN 461 +E+ Sbjct: 446 KED 448 >gi|212691979|ref|ZP_03300107.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855] gi|212665371|gb|EEB25943.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855] Length = 517 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 109/558 (19%), Positives = 216/558 (38%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55 M+E L + +W+ A L G+ +DF L F + L +E Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + + D + A ++ ++ S++ N LE + Sbjct: 59 ITFKELWEMDDTDAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAIKRKENILPILERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A I + +GQE P T+ + ML+ + R Sbjct: 231 PTCGSGSLLLRA----------AHIGNAVEIYGQEKNPTTYNLARMNMLLHDI-----RF 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + I+ G TL D F +F ++NPPF +W + + + GR L Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L + GG A V LF G A E IRR+L+E + ++AI Sbjct: 331 KTADYAFILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + +L +K + + I+A+ + ++ + + + + Sbjct: 384 IGLPANIFYGTSIPTCVLVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPEHIK 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I+D Y R+ + +S + + + P R ++ ++A + K Sbjct: 438 KIVDTYRDRKEIEKYSHLATLQEIADNDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 AKRADLDKEIEGYLKELG 514 >gi|254932530|ref|ZP_05265889.1| type I restriction-modification system [Listeria monocytogenes HPB2262] gi|293584085|gb|EFF96117.1| type I restriction-modification system [Listeria monocytogenes HPB2262] gi|332310721|gb|EGJ23816.1| Type I restriction-modification system, M subunit [Listeria monocytogenes str. Scott A] Length = 858 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 103/494 (20%), Positives = 174/494 (35%), Gaps = 78/494 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------------SA 54 ++ + +W A +L G + + +L + L T Sbjct: 3 TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETYKSIAGEGQLSEAEL 62 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103 V + A +L+ ++ F + L N E Sbjct: 63 VEKYAKARAVHGENLDKMIQSVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122 Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I + SD+ + +F T L E++ + + + F + + V+ Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F E + A +F TPR V + + I ++YDPT G+ Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L H+ + + L +GQE T+ + +L+ + + + Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEKMS-----V 282 Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 + G TLS+D F + NPP+ K + RF Sbjct: 283 KNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFEIAGV 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP S G FL+H L G AIVL LF G E EIR+ LL + I Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + I+ LP +LF T I + IL + V +I+A+ + + K+ + + Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRA--ISEPVLVIDASRNFIKV----GKQNELQEK 443 Query: 448 QRRQILDIYVSREN 461 +I+D YV R Sbjct: 444 DIARIVDTYVERAE 457 >gi|317010094|gb|ADU80674.1| Type I restriction-modification enzyme subunit M [Helicobacter pylori India7] Length = 817 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 119/596 (19%), Positives = 217/596 (36%), Gaps = 92/596 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + G FY E L+ G + L IA ++ + K + + DF+ Sbjct: 45 ARSNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDP CG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPACGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290 L +GQE + T A+C M++ + +I +G STLS FT + Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGFSTLSNPFFTTENGML 258 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + +L R+G V +I+A+ + + +G K R + D ++++D + + + Sbjct: 372 VIVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNAYKEIPHYS 426 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + + ++ + ++ + Q D+ Sbjct: 427 KM---------------------VSLEEISANDYNLNIPRYIAAKQESEKDLFALTNSHK 465 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582 Y + K LK K A + + + E+ Sbjct: 466 ASYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKELIIQSSEYQ 521 >gi|331655788|ref|ZP_08356777.1| type I restriction-modification system, M subunit [Escherichia coli M718] gi|331046562|gb|EGI18651.1| type I restriction-modification system, M subunit [Escherichia coli M718] Length = 518 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 122/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y A Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEADDDSICYAALD 64 Query: 64 GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFTEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|237751421|ref|ZP_04581901.1| type I restriction-modification system [Helicobacter bilis ATCC 43879] gi|229372787|gb|EEO23178.1| type I restriction-modification system [Helicobacter bilis ATCC 43879] Length = 534 Score = 274 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 114/492 (23%), Positives = 199/492 (40%), Gaps = 71/492 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-------------- 51 +L + IWK ++L G DF +L F R + L Sbjct: 15 TQRTALHSTIWKIVDELRGSVDGWDFKMYVLGFLFYRFISENLAEHINANMRECGEIDFD 74 Query: 52 ----RSAVREKYLAFGGSNIDLESFVKVAGYSFYN---TSEYSLSTLGST--NTRNNLE- 101 K + I+ + F + F N T + + L +T N N+E Sbjct: 75 YTHLSDEEIIKDNDIKENIINQKGFFIMPSELFINVLQTHKSDTTNLNATLSNVFRNIEY 134 Query: 102 SYIASFSDN-AKAIFEDFDFSSTIAR-----LEKAGLLYKICKNFSGIELHPDTVPDRVM 155 S I + S+N K +F D D +S+ +++ LYK+ K S ++L Sbjct: 135 SSIDTKSENDFKGLFNDIDVNSSANLGERSLIKRNERLYKVMKEISKLDLDYSDNAIDAF 194 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + Y L+R + + +F TP++V HL L+ ++ K +YD CG Sbjct: 195 GDAYVCLMRMYAGSAGKSGGEFFTPQEVSHLLARLVSYGKQSVNK--------VYDSACG 246 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + L + K +GQE+ P ++ +C M++ + + + Sbjct: 247 SSSLLLQFAKVL------GKNNVKNGFYGQEINPTSYNLCRINMILHNV-----GYENFD 295 Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G T + + F +SNPP+ KW D + + RF P L Sbjct: 296 ISLGDTFLEPKHEDDEPFDAIVSNPPYSIKWAGDSNPL-----LINDPRFAPAGVLAPKF 350 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F+MH+ + L G AI L+ G A E +IR++L++N+ I+ ++ Sbjct: 351 YADLAFVMHMLSWLSPS----GTCAIAAFPVVLYRGGA---EKKIRKYLVDNNFIDCLIQ 403 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +LFF TNI T + +L K + KV I++++L++ + N + I+ + I Sbjct: 404 LPPNLFFGTNIVTSIIVLKKNK---QNNKVLFIDSSELFSKVTN----KNILEINHIITI 456 Query: 453 LDIYVSRENGKF 464 ++ Y REN + Sbjct: 457 VEAYAKRENKEH 468 >gi|291289376|ref|YP_003517708.1| type I restriction-modification system DNA-methyltransferase subunit M [Klebsiella pneumoniae] gi|290792337|gb|ADD63662.1| type I restriction-modification system DNA-methyltransferase subunit M [Klebsiella pneumoniae] Length = 520 Score = 274 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 120/483 (24%), Positives = 196/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 7 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 67 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + ++ K +YDP G+G L Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLL 235 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + GQE+ T+ + M + + D +I+ G+T Sbjct: 236 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ KVQ I+A++L+ N I+ D QI+ ++ S Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445 Query: 459 REN 461 +E+ Sbjct: 446 KED 448 >gi|262039562|ref|ZP_06012861.1| type I restriction-modification system, M subunit [Leptotrichia goodfellowii F0264] gi|261746440|gb|EEY33980.1| type I restriction-modification system, M subunit [Leptotrichia goodfellowii F0264] Length = 526 Score = 274 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 117/506 (23%), Positives = 201/506 (39%), Gaps = 78/506 (15%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------- 46 ++ + L IW A+++ G DF + +L R + Sbjct: 8 SKEGIQRSELHRKIWAIADEVRGAVDGWDFKQYVLGILFYRFISENMVTFFNSAEHEAGD 67 Query: 47 -ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE---- 101 + ++ + E F + ++ + F + F N + + + N +L Sbjct: 68 LEFDYSKISDEEAERDFRPNTVEDKGFFILPSQLFENVVK---NAAKNENLNTDLANIFK 124 Query: 102 ----SYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTV 150 S I S+N K +FED D +T RL EK L I S I + Sbjct: 125 SIEASAIGFASENDIKGLFEDVD--TTSNRLGGTVAEKNKRLTDILTGISEINFGKFEEN 182 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + YE+LI + S + +F TP+ V L L+++ ++ K +Y Sbjct: 183 DIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMEGKTSINK--------VY 234 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DPTCG+G L + GQE+ + M + + + Sbjct: 235 DPTCGSGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHNINYN--- 285 Query: 271 DLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 + +I++G TL L + ++ F +SNPP+ KW D D RF P Sbjct: 286 --NFSIKRGDTLLNPLHSEEKPFDAIVSNPPYSIKWIGDGDPT-----LINDERFAPAGK 338 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S F+MH + L GRAAIV + A E IR++L++N+ I Sbjct: 339 LAPKSYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---EQTIRKYLVDNNFI 391 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + ++ LP +LFF T+IAT + +++ KTE KV I+A+ + N I+ + Sbjct: 392 DCVIQLPENLFFGTSIATCILVMAKNKTE---NKVLFIDASKEFKKETN----NNILEEK 444 Query: 448 QRRQILDIYVSRENGKF-SRMLDYRT 472 I++ + +R + ++ SR +D Sbjct: 445 NIENIVEEFKNRSDKEYFSRYVDKSE 470 >gi|163803500|ref|ZP_02197371.1| N-6 DNA methylase [Vibrio sp. AND4] gi|159172718|gb|EDP57568.1| N-6 DNA methylase [Vibrio sp. AND4] Length = 573 Score = 274 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 98/556 (17%), Positives = 191/556 (34%), Gaps = 94/556 (16%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56 L + +W AE L + +L ++ + A + + ++ Sbjct: 9 LKELESKLWTAAEKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADLANPDHEYY 68 Query: 57 -------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 E+ LA +N F+ +E L R + + Sbjct: 69 LDPADFSEEELAEEIANELEVRDFYTEKNVFWLPTESRWQFLQDNGPRVIGGADLEIDGP 128 Query: 110 NAKAIFEDFD-----FSSTIARLEKAG--------------------LLYKICKNFSGIE 144 N + + + + +E+ L ++ + I Sbjct: 129 NQSKVTKKITSVGHLIDNALEGIERENPTKLKGALNKSYSSLKIDQAKLNELINLIATIP 188 Query: 145 L-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 H D ++ ++YE+++ +F + F TP +V L ++ Sbjct: 189 FVHADLNSKDILGHVYEYMLGQFALAEGKRGGAFYTPASIVSLIVEMI-----------E 237 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETHAVCVAG 258 +YDP G+GGF + + + ++ + +GQE T + Sbjct: 238 PFEGRVYDPAMGSGGFFVQSEKFIERRANQKEVDPLTQKQKISIYGQEYNHTTWQLAAMN 297 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 M IR L+ D ++ + ST + R + ++NPPF K + Sbjct: 298 MAIRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT-------GVD 344 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 R+ G P + + ++ H+ L G +A ++ + S + + E EIR Sbjct: 345 DNDPRWIYGNPPSGNANFAWMQHMLYHLAPD---GSQALLLANGSM---SSSTNNEGEIR 398 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKVQLINAT 428 L+ENDL+E +VALP LF T I +W L+ KT +R+G+V I+A Sbjct: 399 ASLIENDLVECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRDRKGEVLFIDAR 458 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KVLRPLRM 486 +L R D +++ D+Y + + G + Y G+ + + + Sbjct: 459 NLGYMKDRV---LRDFTRDDIQKVADLYHAWKTGIEVNGIAYEDQAGFCKSATLDEITKH 515 Query: 487 SFILDKTGLARLEADI 502 F+L ++ Sbjct: 516 DFVLTPGRYVGAAEEL 531 >gi|329963228|ref|ZP_08300965.1| type I restriction-modification system, M subunit [Bacteroides fluxus YIT 12057] gi|328528924|gb|EGF55864.1| type I restriction-modification system, M subunit [Bacteroides fluxus YIT 12057] Length = 517 Score = 274 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 215/558 (38%), Gaps = 75/558 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55 M+E L + +W+ A L G+ +DF L F + L +E Sbjct: 1 MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58 Query: 56 REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104 + + D+ + ++ ++ S++ N LE + Sbjct: 59 ITFKELWEMDDTDVVELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKWKENILPILERSL 118 Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 D+ + EDF D +L +K L+ + I+ + + Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTANDKNTLVSNVLLALDDIDFSVEASQE 178 Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE++I +F + + A +F TP++V + ++ +R +YD Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A + +GQE P T+ + ML+ + R Sbjct: 231 PTCGSGSLLLRAASIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + I+ G TL D+F +F ++NPPF +W + + + GR L Sbjct: 276 SNFKIENGDTLEWDVFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 F++H+ L N GG A V LF G A E IRR+L+E + I+AI Sbjct: 331 KTADYAFILHMIYHL----NEGGAMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP ++F+ T+I T + ++ +K + + I+A+ + ++ + + + Sbjct: 384 IGLPANIFYGTSIPTCILVM--KKCRKEDDNILFIDASKEFEKVKT----QNKLRKEHID 437 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I+D Y R+ + +S + + + P R ++ ++A + K Sbjct: 438 KIVDTYRERKEIEKYSHLATLQEVADNDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496 Query: 510 LHQSFWLDILKPMMQQIY 527 ++ ++ ++++ Sbjct: 497 AKRAELDKEIEVYLKELG 514 >gi|269967979|ref|ZP_06182018.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827415|gb|EEZ81710.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 919 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 113/586 (19%), Positives = 219/586 (37%), Gaps = 68/586 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLAF 62 + LA IW++A + + ++ IL F + L L + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALS 61 Query: 63 GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117 ++ + GY Y+ + + +N+ +++F + K +FE Sbjct: 62 EDDTETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 121 Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I + + V+ IYE+LI +F + Sbjct: 122 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGY-DVLGYIYEYLIEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + + + +YDPT G+G L + + V Sbjct: 181 GKKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSV--- 231 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + K + + QEL+ T+ + +++R + D + G TL D Sbjct: 232 AKYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITT-----RNGDTLEDDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ +KW+ + + RF GL + FL Sbjct: 287 ESNPQESYQPLYVDAVVSNPPYSQKWDPENKENDPR-----YARF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G IVL LF G E EIR+ L+EN+ I+AI+ LP ++FF Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIENNHIDAIIGLPANIFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L K + V +I+A+ + K + D ++I D + R Sbjct: 393 GTSIPTVILVL---KQKRENNDVLIIDASKHFVKE----GKNNKLQDSDIKRITDAVIHR 445 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ-SFWLD 517 ++ FS+++ +T + P + + + + D Sbjct: 446 QDNDKFSKVVSKKTIQENEYNLNIPRYVDSSPAAETWDLHATMLGGIPNREIAALKEYWD 505 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563 L + ++ ++ KS T+ + ++AFI A Sbjct: 506 ALPELHSALFSAKSSDYSELAVEKSQVQTTIAL---HPQLLAFIEA 548 >gi|158522935|ref|YP_001530805.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158511761|gb|ABW68728.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 680 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 121/650 (18%), Positives = 221/650 (34%), Gaps = 106/650 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--G 64 + +L + ++ A+ L + D+ IL +RL ++++ Sbjct: 3 TKQALGSTLFGMADILRDKVE--DYKSYILSLLFFKRLSDNYTWESENGIKEFVKDNKRE 60 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSDN---AKAIFEDF 118 N + + + F + + + L + + +D+ K + Sbjct: 61 PNDREKEIILRRKHDFTIPDGCFWGDVRNAPLDKKNDALNKAVNAIADSNTSLKGVINTV 120 Query: 119 DFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV--S 171 ++ + + +L + ++L ++ + YE+LI+RF E Sbjct: 121 RWNEPSPDGSGGKKLHPEVLSPLINYLDAVDLSNRNASVDILGDAYEYLIKRFADENRNG 180 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 A F TP++VV + L P TLYDPTCG+GGFL +A ++ Sbjct: 181 TTAGQFYTPQEVVDIIVRYL----------KPQKGSTLYDPTCGSGGFLINAAKYIKKTT 230 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290 K + GQE T A+ M++ L++ I++G TL FT + Sbjct: 231 GTQK---NIRLFGQEDVWNTWAIANINMILHGLDAA--------IKKGDTLKDPKFTEED 279 Query: 291 ------RFHYCLSNPPF---------------------GKKWEKDKDAVEKEHKNGELGR 323 F ++N PF K + KE N R Sbjct: 280 NDLTIKTFDLVMANFPFSQENWWKNGEPKRDKKGKPITNKDGSPQLNYPGKEDFNDPYER 339 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE------- 376 F G+P S+G FL H+ + G+A +V LF G+ E E Sbjct: 340 FDYGIPPFSNGDFAFLQHIVASMNES----GKAGVVCPQGVLFRGQPQKTEEEDGQNRKA 395 Query: 377 -----IRRWLLEN------------DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 IRR L+ ++I+AIV LP +LF+ T I + + + K EER+ Sbjct: 396 DDEYLIRRGFLQGPVNKDGEFVHAINIIDAIVVLPGNLFYGTTIPGSILLFNKNKPEERK 455 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 KV ++ A E + +I I S + + ++ I Sbjct: 456 NKVLMVYAAKEGWY--KEESNMNTLLPQDILRISTILESWGDMEIAKAW---------IT 504 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 + I ++ + E D+ ++ L + + + + + Sbjct: 505 SQKSRLRDLIQEELDFKKGEIDLDTQEDIELAKDKHQKAGELVKAKEAEGKKPTQAQLNN 564 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRA-DPVTDVNGEWIPDTNLT 588 ++ + K+ K +A K+ A D V + D L Sbjct: 565 LQKAKETLEKLIKQKEQRIADAEGQAEKERIAIDEVETELLTMLADPELR 614 >gi|332673346|gb|AEE70163.1| type I restriction-modification system [Helicobacter pylori 83] Length = 583 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 123/580 (21%), Positives = 209/580 (36%), Gaps = 86/580 (14%) Query: 1 MTEFTGSAA--------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48 M A L N IWK A L G DF + + R + + Sbjct: 55 MENKNTQANKSSSLERNELHNTIWKVANKLRGSVDGWDFKQYVFSILFYRYISENMAHYI 114 Query: 49 -------EPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 +P E+ + I + F F N + + T Sbjct: 115 NKQEREHDPNFDYALLSDEEAESAKEGLIVEKGFFIPPSALFCNVLKNAPHNNDLNVTLQ 174 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L +I + G++L Sbjct: 175 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVKKLNEILQAIGGMQLGDYQ 234 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 235 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 286 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 287 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 337 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ +W DK+ + RF P Sbjct: 338 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSIEWVGDKNPI-----LINDERFSPA 390 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + F MH+ + L G AAIV L+ G A E++IR +L++N+ Sbjct: 391 GVLAPKKTADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVQNN 443 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 444 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 496 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + R +IL Y R+ K L + + L E Sbjct: 497 EHNREKILKTYTERKAIKHFSALAS---------MELIKENDYNLSVNRYVEQEDTKEII 547 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q + +KE + A Sbjct: 548 DIKALN----AEISQIVERQSALRNSLDFIIKELEEGQNA 583 >gi|190149559|ref|YP_001968084.1| type I restriction-modification system, M subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914690|gb|ACE60942.1| type I restriction-modification system, M subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 517 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT A L IW+ A ++ G DF + +L R + E Sbjct: 1 MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 59 Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107 S+ D E +K GY Y S+ + + + + NL + + Sbjct: 60 YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 118 Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155 S+N K +F DF +T RL +K L + K + ++ + + Sbjct: 119 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 176 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP++V L L L A+ K +YDP CG Sbjct: 177 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 228 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A D GQE+ T+ + M + + D + Sbjct: 229 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 277 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL K F + F +SNPP+ KW D D RF P L S Sbjct: 278 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++ Sbjct: 333 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 385 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +I Sbjct: 386 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 438 Query: 453 LDIYVSRENGKF 464 L ++ + + + Sbjct: 439 LKLFSDKADVDY 450 >gi|317177320|dbj|BAJ55109.1| Type I restriction enzyme M protein [Helicobacter pylori F16] Length = 529 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 127/580 (21%), Positives = 208/580 (35%), Gaps = 86/580 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------ 46 M A L N IWK A +L G DF + +L R + Sbjct: 1 MENKNTQADKSSSLERNKLHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYI 60 Query: 47 -----ALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L P E+ I + F F N + + + T Sbjct: 61 NKQERELNPGFDYASLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPTNEDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI K ++L Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVAKLNKILKAIGDMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ KW D + + RF P Sbjct: 284 --YSKFHIAHGDTLLDPKLKDDEPFDAIVSNPPYSTKWMGDNNPL-----LINDERFSPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + F MH+ + L G AAIV L+ G A E++IR +L++ + Sbjct: 337 GVLAPKKTADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K ++ I+A+ + K+ + Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 R +IL Y R+ K L + + + L E Sbjct: 443 AHNREKILKTYTERKTIKHFSALAN---------IEQIKENDYNLSVNRYVEQEDTKEAI 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 + L+ +I + + +Q ES +KE + A Sbjct: 494 DIKALN----AEISQIVQKQSALRNSLESIIKELEEGQNA 529 >gi|194426653|ref|ZP_03059207.1| type I restriction-modification system, M subunit [Escherichia coli B171] gi|194415392|gb|EDX31660.1| type I restriction-modification system, M subunit [Escherichia coli B171] gi|195183370|dbj|BAG66907.1| predicted type I restriction-modification system methyltransferase subunit [Escherichia coli O111:H-] gi|323158215|gb|EFZ44307.1| type I restriction-modification system, M subunit [Escherichia coli E128010] gi|323939693|gb|EGB35897.1| type I restriction-modification system [Escherichia coli E482] Length = 518 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 120/483 (24%), Positives = 194/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ VQ I+A++L+ N I+ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLSKHKTD---TNVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443 Query: 459 REN 461 +E+ Sbjct: 444 KED 446 >gi|303249554|ref|ZP_07335761.1| putative type I restriction-modification systemmethyltransferase subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651628|gb|EFL81777.1| putative type I restriction-modification systemmethyltransferase subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 516 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT A L IW+ A ++ G DF + +L R + E Sbjct: 1 MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 59 Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107 S+ D E +K GY Y S+ + + + + NL + + Sbjct: 60 YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 118 Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155 S+N K +F DF +T RL +K L + K + ++ + + Sbjct: 119 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 176 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP++V L L L A+ K +YDP CG Sbjct: 177 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 228 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A D GQE+ T+ + M + + D + Sbjct: 229 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 277 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL K F + F +SNPP+ KW D D RF P L S Sbjct: 278 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 332 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++ Sbjct: 333 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 385 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +I Sbjct: 386 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 438 Query: 453 LDIYVSRENGKF 464 L ++ + + + Sbjct: 439 LKLFSDKADVDY 450 >gi|262375745|ref|ZP_06068977.1| type I restriction-modification system protein [Acinetobacter lwoffii SH145] gi|262309348|gb|EEY90479.1| type I restriction-modification system protein [Acinetobacter lwoffii SH145] Length = 920 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 102/496 (20%), Positives = 193/496 (38%), Gaps = 68/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63 + LA+ IW++A + + ++ IL F + L + A Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFMFYKFLSDKEQSFLEGNDFAQSDIEALT 61 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNA----KAIFED 117 +++ F+K F Y+ + G T ++ +++FS + K +F+ Sbjct: 62 EEDVETVEFIKNGIGYFIAYDDLFSTWLNKGLDFTVADVRDALSAFSRHIHSSHKKVFDG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L + + + I + V+ IYE+LI F + Sbjct: 122 IFKTLETGLSKLGDNSNSQTKAISDLLQLIKVI-PMNNKQDYDVLGFIYEYLIGSFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + + VA Sbjct: 181 GKKAGEFYTPHEVSVLMSEIIAHYLKD------QPEIKIYDPTSGSGSLLINIGSSVAKH 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286 + + QEL+ T+ + +++R + L NI + TL D Sbjct: 235 VNDANKIK---YYAQELKENTYNLTRMNLVMRGI-------LPANIVARNADTLEDDWPF 284 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + +SNPP+ + W+ + +K GL + Sbjct: 285 FEDNDPINTYEPLYVDAVVSNPPYSQAWDPANKDADPRYKE-------FGLAPKTKADYA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L+ G AIVL LF G E IR L++ + I+AI+ LP ++ Sbjct: 338 FLLHDLYHLKP----NGIMAIVLPHGVLFRGGE---EERIRTNLIKKNHIDAIIGLPANI 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + IL K + V +++A+ + +G K + ++I+D + Sbjct: 391 FFGTGIPTVIIIL---KQQRPTTDVLIVDASKGFV---KQG-KNNHLQASNIKKIVDAVI 443 Query: 458 SRENGK-FSRMLDYRT 472 R++ + FSR++ + Sbjct: 444 ERKDVEQFSRLVTQKE 459 >gi|217033077|ref|ZP_03438543.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128] gi|298737196|ref|YP_003729726.1| type I restriction enzyme M protein [Helicobacter pylori B8] gi|216945198|gb|EEC23885.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128] gi|298356390|emb|CBI67262.1| type I restriction enzyme M protein [Helicobacter pylori B8] Length = 815 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 124/565 (21%), Positives = 220/565 (38%), Gaps = 74/565 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G + L IA ++ + K + + DF+ Sbjct: 45 ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGENKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290 L +GQE + T A+C M++ +I +G STLS LFT + Sbjct: 206 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPLFTTENGML 258 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + IL R+G V +I+A+ + + +G K R + D ++++D + + + +S Sbjct: 372 VIILDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNAYKEIPYYS 426 Query: 466 RMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +M+ + R + +K A + + K + + K + Sbjct: 427 KMVSLEEISANDYNLNIARYIAAKPESEKDLFALINSPSYLPKNEIKAYDPYFQVFKELK 486 Query: 524 QQIYPYGWAESFVKESIKSNEAKTL 548 ++ E + + K L Sbjct: 487 NTLFKKSDKEGYYALKTECENIKEL 511 >gi|304440530|ref|ZP_07400417.1| type I restriction-modification system DNA-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371008|gb|EFM24627.1| type I restriction-modification system DNA-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 528 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 119/560 (21%), Positives = 208/560 (37%), Gaps = 77/560 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + A L IW A+++ G DF + IL R + + ++ + Sbjct: 10 NNESLQRAELHRKIWAIADNVRGAVDGWDFKQYILGILFYRFISENITEFFNSAEHEAGD 69 Query: 62 FGGSNIDLESFVKVAGYS---------FYNTSEYSLSTLGSTNTRNNLE-------SYIA 105 DL + F SE ++ T NL I Sbjct: 70 LDFDYADLSDEEAERDFRPGTVEDKGFFILPSELFVNVCKDARTNENLNTDLANIFKAIE 129 Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153 + D+ K +FED D + RL EK L I + I D Sbjct: 130 GSAVGYPSEDDIKGLFEDVD--TKSNRLGGNVPEKNKRLADILTGIAEINFGEFQKNDID 187 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+LI + S + +F TP+ V L +++D ++ K YDPT Sbjct: 188 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARIVMDGKTSINK--------AYDPT 239 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + GQE+ + M + + + + Sbjct: 240 CGSGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHNVNYN-----N 288 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I++G TL + ++ F +SNPP+ KW D D RF P L Sbjct: 289 FSIKRGDTLLQPKHKDEKPFDAIVSNPPYSIKWIGDADPT-----LINDERFAPAGKLAP 343 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F++H + L GRAAIV + A E IR++L++N+ I+ + Sbjct: 344 KSYADYAFILHSLSYLSSK----GRAAIVCFPGIFYRKGA---EKTIRQYLVDNNFIDCV 396 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LFF T+IAT + +++ KTE K+ I+A+ + N I+ Sbjct: 397 IQLPENLFFGTSIATCILVMAKNKTE---NKILFIDASKEFKKETN----NNILEQKNID 449 Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWR 505 I++ + +R+ ++ SR + + + + + E + T + Sbjct: 450 AIVEEFRNRDEKEYFSRYVPVEEIVENDYNLSVSTYVEKEDTREKIDIKVLNKEIEETVK 509 Query: 506 KLSPLHQSFWLDILKPMMQQ 525 K+ L ++ +I+K + + Sbjct: 510 KIDEL-RASINEIVKELEDE 528 >gi|108563258|ref|YP_627574.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] gi|107837031|gb|ABF84900.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] Length = 507 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 120/555 (21%), Positives = 206/555 (37%), Gaps = 78/555 (14%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVREKYLAFGGS 65 N IWK A +L G DF + +L R + + + + Y Sbjct: 2 HNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKKERKRDPDFDYAKLSDE 61 Query: 66 N--------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------DNA 111 I+ + F F N + + T N+ + I S +N Sbjct: 62 EAKHARKHLIEEKDFFIPPSALFCNALKNAPHNEDLNVTLQNIFNEIEKSSLGTPSEENV 121 Query: 112 KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFG 167 K +F D D +S + + L KI + G++L V + YE+L+ + Sbjct: 122 KGLFADLDVNSNKLGSSHKNRVEKLTKILEAIGGMQLGDYLKSGIDVFGDAYEYLMAMYA 181 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S + +F TP++V L + L +++ K +YDP CG+G L + Sbjct: 182 SNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLLLQFSKVL 233 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 D GQE+ T+ +C M + + +I G TL Sbjct: 234 GDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YTKFHIALGDTLLDPKH 282 Query: 288 TG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLAN 344 + F +SNPP+ KW D + + RF P L + + F MH+ + Sbjct: 283 EDDEPFDAIVSNPPYSTKWGGDNNPL-----LINDERFSPAGVLAPKNAADLAFTMHMLS 337 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G AAIV L+ G A E++IR +L++ ++I+ ++ALP +LFF TNIA Sbjct: 338 YLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFFGTNIA 390 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 T + +L K ++ I+A+ + K+ + R +IL Y+ R+ K Sbjct: 391 TCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKAHNREKILQTYIERKEVKH 443 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L + + + L E + L+ +I + + + Sbjct: 444 FCALAN---------MEQIQENDYNLSVNRYVEQEDTKEAIDIKALN----SEISQIVEK 490 Query: 525 QIYPYGWAESFVKES 539 Q + +KE Sbjct: 491 QSALRNRLDRIIKEL 505 >gi|15612488|ref|NP_224141.1| Type I restriction enzyme modification subunit [Helicobacter pylori J99] gi|4156043|gb|AAD07001.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter pylori J99] Length = 815 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 121/565 (21%), Positives = 227/565 (40%), Gaps = 74/565 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------- 43 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + +++S ++V FY E L+ G + L IA ++ + K + + DF+ Sbjct: 44 KAKNNMDSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290 L +GQE + T A+C M++ + +I +G STLS LFT + Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPLFTTENGML 258 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G+ A++L LF G A E++IR+ LL I+ ++ L +LF+ T+I Sbjct: 319 NPT----GKGAVILPHGVLFRGNA---EAQIRKNLLMKGYIKGVIGLAPNLFYGTSIPAC 371 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + +L R+G V +I+A+ + + +G K R + + ++++D + + + +S Sbjct: 372 VIVLDKENAHARKG-VFVIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYS 426 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSPLHQSFWLDILKPMM 523 +M+ + P ++ + A + + K + + K + Sbjct: 427 KMVSLEEISLNDYNLNIPRYIAAKQELEKDLFALINSPSYLPKNEIKAYDPYFQVFKELK 486 Query: 524 QQIYPYGWAESFVKESIKSNEAKTL 548 ++ E + + K L Sbjct: 487 NTLFKKSDKEGYYALKTECENIKDL 511 >gi|257893689|ref|ZP_05673342.1| type I restriction-modification system M subunit [Enterococcus faecium 1,231,408] gi|257830068|gb|EEV56675.1| type I restriction-modification system M subunit [Enterococcus faecium 1,231,408] Length = 512 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 100/527 (18%), Positives = 202/527 (38%), Gaps = 69/527 (13%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70 +++ +L + L L E+Y + Sbjct: 1 MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA------KAIFEDFDFS 121 + Y S L + + + L +F A +F+D D Sbjct: 61 LIATIVDILGYAISPVYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDLQ 120 Query: 122 ST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 S ++ + ++ K + +E+ V+ + YE LI +F SE + A +F Sbjct: 121 SKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEFLISQFASEAGKKAGEFY 178 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V + ++ + +++DPT G+G + + N++ P Sbjct: 179 TPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT-------HPD 225 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296 + HGQEL T+ + +++ ++++ N++ G TL+KD T + + + + Sbjct: 226 NVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTDEPYTFDAVV 280 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPP+ W D ++ R+G L S FL+H L+ G Sbjct: 281 MNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKET----GTM 331 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIVL LF G A E IR+ LLE+ I A++ +P +LFF T+I T + +L + Sbjct: 332 AIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQT 388 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 V I+A+ + GK + ++++ ++IL+ Y R++ + ++ + + Sbjct: 389 R---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKDVEKYAHLATFDEIKE 441 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + P + ++ + + +K+ ++L+ + Sbjct: 442 NDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLEAI 488 >gi|308183636|ref|YP_003927763.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori PeCan4] gi|308065821|gb|ADO07713.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori PeCan4] Length = 820 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 121/596 (20%), Positives = 223/596 (37%), Gaps = 87/596 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + S ++V FY E L+ G + L IA ++ + K + + DF+ Sbjct: 48 DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAYIAEQNDLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ + +I +G STLS F + Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPFFIKNNMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQIINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V LI+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARARKG-VFLIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 470 SYLPKNEIEAYAPYFQVFKELKNTLFKKSDKEGYYALKTECQNIKDLITQSSEYQA 525 >gi|307256315|ref|ZP_07538098.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865141|gb|EFM97041.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 535 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 120/492 (24%), Positives = 202/492 (41%), Gaps = 70/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVR 56 MT A L IW+ A ++ G DF + +L R + +E +++ Sbjct: 21 MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 79 Query: 57 EKYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107 + NI L E +K GY Y S+ + + + ++ NL + + Sbjct: 80 YAAWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESS 138 Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155 S+N K +F DF +T RL +K L + K + ++ + + Sbjct: 139 ATGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 196 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP++V L L L A+ K +YDP CG Sbjct: 197 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 248 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A D GQE+ T+ + M + + D + Sbjct: 249 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 297 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL K F + F +SNPP+ KW D D RF P L S Sbjct: 298 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 352 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++ Sbjct: 353 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 405 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +I Sbjct: 406 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 458 Query: 453 LDIYVSRENGKF 464 L ++ + + + Sbjct: 459 LKLFSDKADVDY 470 >gi|331085151|ref|ZP_08334237.1| type I restriction-modification system [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407934|gb|EGG87424.1| type I restriction-modification system [Lachnospiraceae bacterium 9_1_43BFAA] Length = 531 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 100/491 (20%), Positives = 179/491 (36%), Gaps = 64/491 (13%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP------------TRSAV 55 L +W A+ L G ++ +L + L + T Sbjct: 4 TKDLLQVLWSGADVLRGKMDANEYKTYLLGLVFYKYLSDSYLEKAYDLLNDEAPKTLEEA 63 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--------SYIAS 106 ++ Y S + ++ Y + + N ++I Sbjct: 64 QKVYEEAYDSEDAEDLLEELKSSLHYTLEPGMTYVCMLRDAKNNCFSREKLQAAFNHIEE 123 Query: 107 FSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 + +F D D S +++ + + K G +L V+ N YE+LI Sbjct: 124 ADELFNGLFSDVDLYSNRLGTGDQKQSDTIADVLKVLEGADLIHAKGD--VLGNAYEYLI 181 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 +F SE + A +F TP + + L + +YDP G+G + Sbjct: 182 GQFASETGKKAGEFYTPHGPAQILCRIALLGQEG------KKGLQVYDPCMGSGSLMLSC 235 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N+ + P + +GQE+ P T+ + M + R+ + +++++ TL Sbjct: 236 KNYSEE-------PDYIKYYGQEIMPSTYNLARMNMFLHRVHPE-----NQHLRNADTLD 283 Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 D T + F NPP+ KW + + E G+ L S FL+H Sbjct: 284 ADWPTDEDTEFDVVTMNPPYSAKWSAAEGFKQDERFMDYGGK----LAPKSKADYAFLLH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L G AIVL LF G E EIR+ LLEN I A++ LP ++F+ T Sbjct: 340 GFYHLRQS----GTMAIVLPHGVLFRGA---SEGEIRKILLENGSIYAVIGLPANMFYNT 392 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I T + +L + V I+A+ + + K+ ++ D+ +L++Y +R+ Sbjct: 393 SIPTCIIVLKKHREGR---DVLFIDASSQFVKEK----KQNVMQDEHIDHVLELYKNRKP 445 Query: 462 GKFSRMLDYRT 472 L Sbjct: 446 VDKEAYLASYE 456 >gi|253315524|ref|ZP_04838737.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 446 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 184/468 (39%), Gaps = 68/468 (14%) Query: 25 DFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNIDLESFVKVAGYS 79 + ++F IL R L E + A+ + ++ Sbjct: 1 NMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQV 60 Query: 80 FYNTSE---------------YSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST 123 Y + + L +T R S + S+N +F D D SST Sbjct: 61 GYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSST 119 Query: 124 ---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP Sbjct: 120 RLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTP 179 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + V + ++ D D +R +YDPTCG+G L K + Sbjct: 180 QQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVY 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 GQE T+ + ML+ + R + +I+ TL F G F ++NPP Sbjct: 222 RYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPP 276 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + KW D E +G L S F+ H+ + L+ G A+VL Sbjct: 277 YSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVL 327 Query: 361 SSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ Sbjct: 328 PHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQD 382 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 V I+A++ + GK + ++D Q +I+D Y +E K+S Sbjct: 383 DNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSY 426 >gi|219870941|ref|YP_002475316.1| type I restriction-modification system, M subunit [Haemophilus parasuis SH0165] gi|219691145|gb|ACL32368.1| type I restriction-modification system, M subunit [Haemophilus parasuis SH0165] Length = 515 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 107/490 (21%), Positives = 184/490 (37%), Gaps = 65/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M A L IW+ A ++ G DF + +L R + + E Sbjct: 1 MIISIQQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN 60 Query: 61 AFGGSNIDL------ESFVKVAGYSFY----------NTSEYSLSTLGSTNTRNNLESYI 104 S+ D + +K GY Y N + ++E+ Sbjct: 61 YAQFSDDDPILEQIKDDTIKSKGYFIYPSQLFENVVKNAHTNPALNIELAEIFADIENSA 120 Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + + + I F DF + RL +K L + K ++ + + Sbjct: 121 NGY-PSEQDIKGLFADFDTRSNRLGNTVADKNKRLTAVLKGVEELDFGKFEDNHIDLFGD 179 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP++V L L L + K +YDP G+G Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKTVNK--------IYDPAAGSG 231 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A D GQE+ T+ + M + + D +I Sbjct: 232 SLLLQAKKQFDDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL F + F +SNPP+ +W D++ RF P L S Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPT-----LINDERFAPAGILAPKSKA 335 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+IA + +LS K + K Q I+A+ L+ N ++ D+ +I+ Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 442 LFSEKTDVPH 451 >gi|315634370|ref|ZP_07889657.1| type I restriction-modification system DNA-methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476960|gb|EFU67705.1| type I restriction-modification system DNA-methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 515 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 188/490 (38%), Gaps = 65/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M L IW+ A D+ G DF + +L R + + Sbjct: 1 MATAIQQREELQRRIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60 Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--- 111 ++ + E +K GY Y S+ + + + NT NL + + S + Sbjct: 61 YSAFNDDNPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKSIFTDIENS 119 Query: 112 -------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + I F DF +T RL +K L + K + ++ + + Sbjct: 120 ATGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFGDFEDNHIDLFGD 179 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L L D + K +YDP G+G Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSG 231 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + D +I Sbjct: 232 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL F + F +SNPP+ KW D RF P L S Sbjct: 281 LGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKA 335 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L + GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 DFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALA 388 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T+IA + +LS K + + Q I+A+ L+ I+ ++ QIL Sbjct: 389 PNLFFGTSIAVNILVLSKHKPDTQT---QFIDASGLF----KSATNNNILEEEHIEQILK 441 Query: 455 IYVSRENGKF 464 ++ +E+ Sbjct: 442 LFADKEDVPH 451 >gi|325578338|ref|ZP_08148473.1| type I restriction-modification system DNA-methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160074|gb|EGC72203.1| type I restriction-modification system DNA-methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 514 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 115/490 (23%), Positives = 189/490 (38%), Gaps = 66/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M A L IW+ A D+ G DF + +L R + + Sbjct: 1 MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60 Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS----- 108 ++ D E +K GY Y S+ + + + NT NL + + F+ Sbjct: 61 YSTFNDDDPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKNIFTAIENS 119 Query: 109 ----DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + + I F DF +T +RL +K L + K + ++ + + Sbjct: 120 ATGYPSEQDIKGLFADFDTTSSRLGNTVADKNSRLADVLKGVAELDFGDFEDNHIDLFGD 179 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L L D + K +YDP G+G Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSG 231 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + D +I Sbjct: 232 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL F + F +SNPP+ KW D RF P L S Sbjct: 281 LGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKA 335 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L + GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 DFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALA 388 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T+IA + +LS K + Q I+A+ L+ N + + QIL Sbjct: 389 PNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLFKPDTN-----NSLEPEHIEQILK 440 Query: 455 IYVSRENGKF 464 ++ +E+ Sbjct: 441 LFADKEDVPH 450 >gi|328947421|ref|YP_004364758.1| type I restriction-modification system, M subunit [Treponema succinifaciens DSM 2489] gi|328447745|gb|AEB13461.1| type I restriction-modification system, M subunit [Treponema succinifaciens DSM 2489] Length = 514 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 115/486 (23%), Positives = 192/486 (39%), Gaps = 68/486 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE---CALEPTRSA--VREKYL 60 A L IWK A ++ G DF + +L R + CA V Sbjct: 5 QQRAELQAQIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFCAYIEADDESIVYASLE 64 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFSD---------- 109 + + +K GY Y S+ ++ + N +L + + FS+ Sbjct: 65 DSIITPEIKDDAIKTKGYFIY-PSQLFVNIAKNANDNESLNTDLAEIFSEIEKSATGYDS 123 Query: 110 --NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEH 161 + K +F DF +T RL EK L + SG+ + + YE Sbjct: 124 EQDIKGLFA--DFDTTSNRLGNTVKEKNSRLAAVINGVSGLNFGNFHDNQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP++V L L + + + K +YDP CG+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQNVSKLIARLAMHKQENVNK--------IYDPACGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + GQE+ T+ + M + + D NI+ G T Sbjct: 234 QAKKQFEENKIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIKLGDT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L+ F + F +SNPP+ W D RF P L S F Sbjct: 283 LTNPQFKDDKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 ILHSLNYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+IA + +LS K + K+Q I A +L+ N I+ D+ +I++ + S Sbjct: 391 YGTSIAVNILVLSKHKED---TKIQFIEAGELYQKETN----NNILTDEHIEKIIEAFDS 443 Query: 459 RENGKF 464 + + ++ Sbjct: 444 KNDIQY 449 >gi|57790478|gb|AAW56179.1| Cj81-118 [Campylobacter jejuni subsp. jejuni 81-176] Length = 314 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 101/324 (31%), Positives = 160/324 (49%), Gaps = 31/324 (9%) Query: 4 FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + NFIW A+DL + + VILP T++RR++ LEPT+ V + Y + Sbjct: 2 EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61 Query: 63 GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 +LES + + F+N S ++L TL N R N E+Y+ FS+N K I Sbjct: 62 KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163 F F + + LE++ +L+ + + F + + + M ++E LI Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+++ L T L+ P K+ +YD CG+GG LT++ Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + D + + +GQE+ PET+A+C A MLI+ + D +I+ GSTLS Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEK 307 D +F + LSNPP+GK WE Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWEN 314 >gi|256832724|ref|YP_003161451.1| type I restriction-modification system, M subunit [Jonesia denitrificans DSM 20603] gi|256686255|gb|ACV09148.1| type I restriction-modification system, M subunit [Jonesia denitrificans DSM 20603] Length = 521 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 114/583 (19%), Positives = 213/583 (36%), Gaps = 94/583 (16%) Query: 1 MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVR 56 M+ T A L IW+ A DL G DF +L R + L ++ + Sbjct: 1 MSPTTKESQRAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTAYLNKAEHK 60 Query: 57 EKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSDN 110 +F + + V FY + + T NL + + Sbjct: 61 AGDASFDYARLPDAQAEFGRKETVEEKGFYILPSDLFQNVRRNAATDPNLNETLERVFKD 120 Query: 111 A-------------KAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVP 151 K +F+D D +T+AR + L K+ + L + Sbjct: 121 IEGSALGTESEGDLKGLFDDLDVNSSKLGNTVAR--RNEKLVKLLDAIGDLPLGNFEDNS 178 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE+L++ + S+ + ++ TP++V + + + + K +YD Sbjct: 179 IDLFGDAYEYLMQMYASQAGKSGGEYYTPQEVSEVLARIAVAGKKRVNK--------VYD 230 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P G+G L + + +GQE+ T+ + M + + + Sbjct: 231 PAAGSGSLLLKFAKVL-------GKENVGGFYGQEINLTTYNLARINMFLHDVNYEKFS- 282 Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 + G TL+ + F +SNPP+ KWE D + + RF P L Sbjct: 283 ----LAHGDTLTDPQHWDDEPFEAIVSNPPYSIKWEGDANPL-----LINDERFAPAGVL 333 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + F MH+ + L + G AAIV L+ G A E++IR++L++N+ ++ Sbjct: 334 APKSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVD 386 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 A++ LP DLFF T IAT + +L K + V ++A++ + + G K + D Sbjct: 387 AVIQLPPDLFFGTTIATCIIVLKKSKADNA---VLFVDASNEF---KRVGNK-NKLLPDH 439 Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++ ILD R ++ +A + +I Sbjct: 440 QKNILDALEQRVPVD---------------------HRVALISNEEIAANDYNIAVSSYV 478 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 + + + + +I ++ ++ SI + A K Sbjct: 479 EAEDTREVINITELNAEIARIVARQAELRTSIDAIVADLEGTK 521 >gi|210135698|ref|YP_002302137.1| type I R-M system M protein [Helicobacter pylori P12] gi|210133666|gb|ACJ08657.1| type I R-M system M protein [Helicobacter pylori P12] Length = 816 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 122/595 (20%), Positives = 218/595 (36%), Gaps = 91/595 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G + L IA ++ + K + DF+ Sbjct: 45 ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGAIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMIDALSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ + +I +G STLS LF K Sbjct: 206 QKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPLFIENGMLK 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEKNGDFAFLLHIIKSLK 318 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 319 TT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + D ++++D + + + + Sbjct: 372 IVLDKENAHARKG-VFVIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNAYKEIPYYSK 426 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 427 M---------------------VSLEEISANDYNLNIPRYIAAKQESEKDLFALINSHKA 465 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582 Y + K LK K A + + E+ Sbjct: 466 SYLPKNEIKAYAPYFQAFKELKNTLFKKSDKEGYYALKTECENIKESITQSLEYQ 520 >gi|135199|sp|P10484|T1M1_ECOLX RecName: Full=Type I restriction enzyme EcoR124II M protein; Short=M.EcoR124II gi|4467402|emb|CAA31541.1| unnamed protein product [Escherichia coli] Length = 520 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 119/483 (24%), Positives = 194/483 (40%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 7 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 67 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 235 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A + GQE+ T+ + M + + D +I+ G+T Sbjct: 236 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +LS KT+ VQ I+A++L+ N I+ D QI+ ++ S Sbjct: 393 FGTTIAVNILVLSKHKTD---TNVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445 Query: 459 REN 461 +E+ Sbjct: 446 KED 448 >gi|317178238|dbj|BAJ56027.1| Type I restriction enzyme M protein [Helicobacter pylori F16] Length = 820 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 122/596 (20%), Positives = 223/596 (37%), Gaps = 87/596 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ IL L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYILNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + S ++V FY E L+ G + L IA ++ + K + + DF+ Sbjct: 48 DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS LF + Sbjct: 210 KNGLTIYGQEKDISTTALCRMNMILHN-------SADADIAKGGSSTLSNPLFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 AFDYVVANPPFSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 470 SYLPKNEIKAYAPYFQVFKELKNMLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525 >gi|224283254|ref|ZP_03646576.1| hypothetical protein BbifN4_05435 [Bifidobacterium bifidum NCIMB 41171] gi|313140400|ref|ZP_07802593.1| HsdM [Bifidobacterium bifidum NCIMB 41171] gi|313132910|gb|EFR50527.1| HsdM [Bifidobacterium bifidum NCIMB 41171] Length = 855 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 106/518 (20%), Positives = 190/518 (36%), Gaps = 70/518 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAVREK-YLAFG 63 + LA IW++A + + ++ IL F + L +R++ Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMRDEDLEELR 61 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113 + + +V+ F Y+ + N+ +++F N Sbjct: 62 EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121 Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IF+ + +++L ++ + I + IYE+LI F S Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + + +YDPT G+G L VA Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 233 RRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284 Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + +SNPP+ + WE + GE RF G+ S Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L G IVL LF G E IRR L+EN I+AI+ LP + Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T I T + +L + + V +++A+ +T K + ++I+D Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442 Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 +R+ KFSR++ + P + + Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480 >gi|212639883|ref|YP_002316403.1| type I restriction-modification system methyltransferase subunit [Anoxybacillus flavithermus WK1] gi|212561363|gb|ACJ34418.1| Type I restriction-modification system methyltransferase subunit [Anoxybacillus flavithermus WK1] Length = 515 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 195/549 (35%), Gaps = 73/549 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +++ A + G D+ +LP LR L E R + + + ++ Sbjct: 13 LFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPSSDWYTEDDEMR 72 Query: 75 ----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 A F E S S + + N++ + + + E+ + + Sbjct: 73 QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGIL 130 Query: 125 ARLEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R+ + L + + FS +T ++ YE+ I F + +F Sbjct: 131 PRIYQGSNLPAENVAGLIEIFSRDVFSANTHESVDILGRTYEYFISSFAASEGNRGGEFF 190 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L A+L ++DP CG+GG + + Sbjct: 191 TPSSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKH 232 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 L +GQE T + +L+ + ++ I+ G +L D F + Y ++N Sbjct: 233 ALSFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYIIAN 284 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + + + R G S+ + +++ H L N G A Sbjct: 285 PPFN------QKDWGADRLSKNDPRL-IGPVTNSNANYMWMQHFLYHL----NDTGTAGF 333 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V+++ + E E+R+ L++ I+ IV LP LFF T I L+ LS + + Sbjct: 334 VMANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKN 391 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + ++ I+A + T + K++ ++ ++ +I +Y + + + D Sbjct: 392 GYRARKNEILFIDARKMGTLVSR---KQKALSKEEIDKIAAVYHAYKYEEAEGYEDV--T 446 Query: 474 GYRRI-KVLRPLRMSFILDKT---GLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIY 527 G+ ++ + + L G + D T K++ L Q + Q Sbjct: 447 GFCKVATIEEVQANDYKLTPGIYVGTEVSDEDDTPFEEKMAELTQRLLEQFEESNRLQEK 506 Query: 528 PYGWAESFV 536 E + Sbjct: 507 IKRDLEGLL 515 >gi|238787647|ref|ZP_04631445.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii ATCC 33641] gi|238724434|gb|EEQ16076.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii ATCC 33641] Length = 526 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 125/555 (22%), Positives = 213/555 (38%), Gaps = 78/555 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------VREKY 59 A+L IW A ++ G DF + +L R + A E Sbjct: 5 QQRAALQRQIWAIANEVRGAVDGWDFKQYVLGALFYRFISENFTSYIEAGDDSINYAELP 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111 + I ++ K GY F S+ ++ + ++ +L + +A + Sbjct: 65 DSVITQEIKEDAI-KTKGY-FIRPSDLFVNVAKNAHSNESLNTDLAHIFADIEASASGYP 122 Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162 + I F DF +T RL +K L + K +G++ T + + YE L Sbjct: 123 SERDIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLDFGDFTASHIDLFGDAYEFL 182 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + + + +F TP+ V L L + ++ K +YDP CG+G L Sbjct: 183 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPACGSGSLLLQ 234 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A H GQE+ T+ + M + + D NIQ G+TL Sbjct: 235 AKKHFDAHVIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQLGNTL 283 Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339 ++ F + F +SNPP+ KW D RF P L S F+ Sbjct: 284 TEPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFV 338 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H + L GRAAIV + G A E +IR++L++N+ +E +++L +LF+ Sbjct: 339 LHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFY 391 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-------QRRQI 452 T IA + +L+ KTE Q I+A+ L+ N ++ D+ +QI Sbjct: 392 GTTIAVNILVLAKNKTETTT---QFIDASGLFKKETN----NNVLTDNDDEKNLGHIQQI 444 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF-ILDKTGLARLEADITWRKLSPLH 511 + ++ S+EN + Y I + +S + R E DI + Sbjct: 445 MRVFASKENVDHFAR----SVPYEEIANEKDYNLSVSSYIEAKDTREEVDIAQLNAELIT 500 Query: 512 QSFWLDILKPMMQQI 526 ++ L+ + I Sbjct: 501 TVARIEQLRTEIDAI 515 >gi|225351808|ref|ZP_03742831.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157055|gb|EEG70394.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 853 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 106/521 (20%), Positives = 191/521 (36%), Gaps = 76/521 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALEPTRSAVR 56 + LA+ IW++A + + ++ IL F + L E + Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSENELMRLKANDFTEDDLPQLT 61 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA----K 112 E D + F + G+ +N+ +++FS N K Sbjct: 62 EDNPDIVEGVQDECGYFIAYDNLFS-----TWIKKGNDFEISNVRDALSAFSRNINPARK 116 Query: 113 AIFED-FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 +F+ FD + +++L ++ + I V+ IYE+LI Sbjct: 117 RVFDGIFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISN 175 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + A +F TP +V L + ++ +YDPT G+G L Sbjct: 176 FAANAGKKAGEFYTPSEVSQLMSEIVAWHLQGR------EQIKIYDPTSGSGSLLIHIGQ 229 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 VA + P ++ + QEL+ T+ + +++R + D + G TL D Sbjct: 230 AVARRNGN---PDSIMYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDD 281 Query: 286 LFTGKR------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 +SNPP+ + W+ + RF G+ S Sbjct: 282 WPWFDTLENKEETYNPLFVDAVVSNPPYSQNWDPTDKEI--------DPRFSYGIAPKSR 333 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L G IVL LF G E +IR+ L+EN I+AI+ L Sbjct: 334 ADYAFLLHDLYHLRAD----GIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGL 386 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P ++FF T I T + +L ++ + +V +++A+ + K + ++I+ Sbjct: 387 PANIFFGTGIPTIVMVLRKKRDD---DRVLIVDASKHFIKD----GKNNKLQASDIKRIV 439 Query: 454 DIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 D+ +R KFSR++ + P + D Sbjct: 440 DVVSNNRTVPKFSRLVSIDEIRANDYNLNIPRYVDSSEDAE 480 >gi|165975742|ref|YP_001651335.1| putative type I restriction-modification systemmethyltransferase subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307262879|ref|ZP_07544503.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165875843|gb|ABY68891.1| putative type I restriction-modification systemmethyltransferase subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306871784|gb|EFN03504.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 537 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT A L IW+ A ++ G DF + +L R + E Sbjct: 21 MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 79 Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107 S+ D E +K GY Y S+ + + + + NL + + Sbjct: 80 YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 138 Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155 S+N K +F DF +T RL +K L + K + ++ + + Sbjct: 139 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 196 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP++V L L L A+ K +YDP CG Sbjct: 197 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 248 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A D GQE+ T+ + M + + D + Sbjct: 249 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 297 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL K F + F +SNPP+ KW D D RF P L S Sbjct: 298 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 352 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++ Sbjct: 353 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 405 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +I Sbjct: 406 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 458 Query: 453 LDIYVSRENGKF 464 L ++ + + + Sbjct: 459 LKLFSDKADVDY 470 >gi|262166148|ref|ZP_06033885.1| type I restriction-modification system M subunit [Vibrio mimicus VM223] gi|262025864|gb|EEY44532.1| type I restriction-modification system M subunit [Vibrio mimicus VM223] Length = 860 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 99/480 (20%), Positives = 177/480 (36%), Gaps = 59/480 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63 + LA IW++A + + D+ IL F + L E Sbjct: 2 NKQQLAAKIWESANQMRSKIEANDYKDYILGFIFYKFLSDKQVQFLLQNDFDNELISKVS 61 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117 ++ D FV+ F Y+ + G + +++FS + K +F+ Sbjct: 62 EADTDTVKFVQDELGYFIAYDNLFSTWVNDGKDFDIAYVRDALSAFSRLINPDHKDLFDG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I + V+ IYE+LI F + Sbjct: 122 IFTTLETGLSKLGESAAAQTKAAMSLIHLINDIPMKGK-QDYDVLGFIYEYLISHFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ + +YDPT G+G L + V Sbjct: 181 GKKAGEFYTPHEVSVLMSEIMAEHLKNRKDIQ------IYDPTSGSGSLLINIGQSVEKR 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + + QEL+ T+ + + +R + + + TL D Sbjct: 235 LDAQN---NIRYYAQELKQNTYNLTRMNLFMRGILPNNIIT-----RNADTLEDDWPIDN 286 Query: 287 ---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 R +SNPP+ +KW + E KN + GL + FL+H Sbjct: 287 EKTHEPMRVDAVVSNPPYSQKW-------DPEFKNKDPRYAPFGLAPKTKADYAFLLHDL 339 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ G IVL LF G E +IR L+E + I+A++ LP ++FF T I Sbjct: 340 YHLKPD----GIMTIVLPHGVLFRGG---DEGKIRENLIEKNHIDAVIGLPANIFFGTGI 392 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 T + +L K V +I+A+ + K + R+I+D R+ + Sbjct: 393 PTVILVL---KRIRTSDDVLIIDASKGFIKD----GKNNKLRACDIRRIVDTVSDRQPQE 445 >gi|187729921|ref|YP_001853815.1| type I restriction-modification system [Vibrio tapetis] gi|182894480|gb|ACB99645.1| type I restriction-modification system N6-methylase [Vibrio tapetis] Length = 864 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 102/495 (20%), Positives = 187/495 (37%), Gaps = 72/495 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----------ALEPTRSAVR 56 + LA IW++A + + D+ IL F + L E + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANDYKDYILGFIFYKFLSDKQVQFLINNEFDEQSIKELN 61 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAK 112 E+ + + F + G + +++F + K Sbjct: 62 EQDEDTLNYVRNEIGYFIAYDNLFS-----TWVEDGQDFDIAYVRDALSAFGRLINPAHK 116 Query: 113 AIFED-FD-FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 +FE F+ + +++L + + + I + V+ IYE+LI + Sbjct: 117 DLFEGIFNTLETGLSKLGENAASQTKAARSLIHLINDIPMKGK-QDYDVLGFIYEYLISQ 175 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + A +F TP +V L + ++ D K +YDPT G+G L + Sbjct: 176 FAANAGKKAGEFYTPHEVSVLMSEIMADHLKDREKIQ------IYDPTSGSGSLLINIGQ 229 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 V + + QEL+ T+ + + +R + + + TL D Sbjct: 230 SVENRLGGEN---NIRYFAQELKKNTYNLTRMNLFMRGILPNDIIT-----RNADTLEDD 281 Query: 286 L-------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSML 337 R +SNPP+ +KW+ + + R+ P GL + Sbjct: 282 WPIDSNKTHEPLRVDAVVSNPPYSQKWDPEFK--------DKDPRYSPFGLAPKTKADYA 333 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H ++ G IVL LF G E +IR L+E + I+AI+ LP ++ Sbjct: 334 FLLHDLYHIKPD----GIMTIVLPHGVLFRGG---DEGKIRENLIEKNHIDAIIGLPANV 386 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + +L K V +I+A+ + K + ++I+D V Sbjct: 387 FFGTGIPTIVLVL---KQTRNNDDVLIIDASKGFVKE----GKNNKLRACDIKRIVDTVV 439 Query: 458 SRENG-KFSRMLDYR 471 SR++ KFS +++ + Sbjct: 440 SRQSQLKFSALVNRQ 454 >gi|312130090|ref|YP_003997430.1| type i restrictioN-modification system, m subunit [Leadbetterella byssophila DSM 17132] gi|311906636|gb|ADQ17077.1| type I restriction-modification system, M subunit [Leadbetterella byssophila DSM 17132] Length = 515 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 110/493 (22%), Positives = 189/493 (38%), Gaps = 65/493 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64 L + IWK A ++ G DF +L R + A Y F Sbjct: 6 QRQELQSKIWKIANEVRGSVDGWDFKHFVLGTLFYRFISENFTDYIEAGDTSINYAKFKD 65 Query: 65 SNIDLE---SFVKVAGYSFY-------NTSEYSLSTLGSTNTRNNLESYIASFSD----- 109 S+I E +K GY Y ++ + +T+ + S + Sbjct: 66 SDIPEEVKVDAIKTKGYFIYPSQLFVNVEAKADDNKNLNTDLKQIFTDIQNSANGYPSEH 125 Query: 110 NAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLI 163 + K +F+DFD +T+ EK L + + + + + + YE LI Sbjct: 126 DIKGLFDDFDTTSTRLGNTVE--EKNKRLSAVLHGIAELNFGSFEETKIDLFGDAYEFLI 183 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + +F TP++V L T + L + +YDP G+G L A Sbjct: 184 HNYAANAGKSGGEFFTPQEVSRLLTRIAL--------HKQTKVNKMYDPAVGSGALLLQA 235 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + GQE+ T+ + M + + D NI G+TL+ Sbjct: 236 KKLYDEHFVEEG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIALGNTLT 284 Query: 284 KDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340 F + F +SNPP+ W D RF P L S F+M Sbjct: 285 DPHFLDDKPFDAIVSNPPYSVNWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFVM 339 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H + L +G GRAAIV + G A E +IR++L++N+ +E +++L +LF+ Sbjct: 340 HALSYL----SGTGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNLFYG 392 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+IA + +LS K + K Q I+A+ + + I+ + +IL ++ +E Sbjct: 393 TSIAVNILVLSKHKAD---TKTQFIDASG--EAFFKKVTNNNILEEKHIAEILHLFDRKE 447 Query: 461 NGKF-SRMLDYRT 472 + +D + Sbjct: 448 TVDHVAVTVDNKQ 460 >gi|221195101|ref|ZP_03568157.1| type I restriction-modification system, M subunit [Atopobium rimae ATCC 49626] gi|221185004|gb|EEE17395.1| type I restriction-modification system, M subunit [Atopobium rimae ATCC 49626] Length = 859 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 109/497 (21%), Positives = 189/497 (38%), Gaps = 71/497 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFG 63 + LA+ IW +A ++ + +++ IL F + L E + Sbjct: 2 NKQQLASRIWASANEIRSKIEASEYKDYILGFIFYKFLSEKEEEYLLKEGFDSQTMKNVS 61 Query: 64 GSNIDLESFVKVAGYSFYNTSEY--SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + ++ FV+ F + + G +N+ +++FS + F Sbjct: 62 EDDQEIVKFVQDNVGYFIAYENLYSTWLSKGHDFDVSNVSDALSAFSRLVNPSYSHV-FD 120 Query: 122 STIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 LE + + + + I V+ IYE+LI F + Sbjct: 121 RVFETLETGLSKLGDTSGSRTKAISSLLQLIRDI-PMDARQGYDVLGYIYEYLISNFAAN 179 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP +V L + ++ + +YDPT G+G L + VA Sbjct: 180 AGKKAGEFYTPHEVSLLMSEIVAGHLKGRHEIE------IYDPTSGSGSLLVNIGQAVAK 233 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL- 286 + + + QEL+ T+ + +++R ++ + NI + G TL D Sbjct: 234 RSGN---KDSIKYYAQELKENTYNLTRMNLVMRGIK-------ASNIIARNGDTLEDDWP 283 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336 + +SNPP+ ++W+ V RF G GL S Sbjct: 284 WFSEGHPETYQPLFVDAVVSNPPYSQRWDPTDKEV--------DPRFNGFGLAPKSKADY 335 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L G IVL LF G E EIR+ L+E D I+AI+ LP + Sbjct: 336 AFLLHDLYHLRPD----GIMTIVLPHGVLFRGGE---EGEIRKNLIERDHIDAIIGLPAN 388 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T I T + +L K + R V +I+A+ + K + R+I+D Y Sbjct: 389 IFFGTGIPTIVMVL---KKQRTRSDVLIIDASKGYVKE----GKNNKLRASDIRRIVDAY 441 Query: 457 VSRENGK-FSRMLDYRT 472 RE+ + F R++ Sbjct: 442 ECREDIERFCRLVSKDE 458 >gi|308064292|gb|ADO06179.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori Sat464] Length = 820 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 121/596 (20%), Positives = 222/596 (37%), Gaps = 87/596 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + S ++V FY E L+ G + L IA ++ + K + + DF+ Sbjct: 48 DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V LI+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARARKG-VFLIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIATKQESEKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 470 SYLPKNEIEAYAPYFQVFKELKNTLFKKSDKEGYYALKTECQNIKDLITQSSEYQA 525 >gi|307251819|ref|ZP_07533721.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860726|gb|EFM92737.1| Type I restriction enzyme, modification subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 536 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT A L IW+ A ++ G DF + +L R + E Sbjct: 21 MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 79 Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107 S+ D E +K GY Y S+ + + + + NL + + Sbjct: 80 YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 138 Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155 S+N K +F DF +T RL +K L + K + ++ + + Sbjct: 139 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 196 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP++V L L L A+ K +YDP CG Sbjct: 197 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 248 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A D GQE+ T+ + M + + D + Sbjct: 249 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 297 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL K F + F +SNPP+ KW D D RF P L S Sbjct: 298 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 352 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L + GRAAIV + G A E +IR++L++N+ +E +++ Sbjct: 353 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 405 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T+IA + +LS KT+ K Q I+A+ ++ N ++ D+ +I Sbjct: 406 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 458 Query: 453 LDIYVSRENGKF 464 L ++ + + + Sbjct: 459 LKLFSDKADVDY 470 >gi|311064527|ref|YP_003971252.1| type I restriction-modification system methyltransferase subunit [Bifidobacterium bifidum PRL2010] gi|310866846|gb|ADP36215.1| Type I restriction-modification system methyltransferase subunit [Bifidobacterium bifidum PRL2010] Length = 855 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 105/518 (20%), Positives = 189/518 (36%), Gaps = 70/518 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAVREK-YLAFG 63 + LA IW++A + + ++ IL F + L + ++ Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMGDEDLEELR 61 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113 + + +V+ F Y+ + N+ +++F N Sbjct: 62 EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121 Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IF+ + +++L ++ + I + IYE+LI F S Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + + +YDPT G+G L VA Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 233 RRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284 Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + +SNPP+ + WE + GE RF G+ S Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L G IVL LF G E IRR L+EN I+AI+ LP + Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T I T + +L + + V +++A+ +T K + ++I+D Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442 Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 +R+ KFSR++ + P + + Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480 >gi|300869811|ref|YP_003784682.1| type-I restriction-modification system HsdM [Brachyspira pilosicoli 95/1000] gi|300687510|gb|ADK30181.1| type-I restriction-modification system, HsdM [Brachyspira pilosicoli 95/1000] Length = 529 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 79/490 (16%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----PTRSAVREK--YLAF 62 L + IWK A+DL G DF + +L R + L + ++ Y Sbjct: 12 ELHSKIWKIADDLRGSVDGWDFKQYVLGMLFYRYISEHLANYLNQNEWDSGNKEFNYADL 71 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASFSDNAK 112 +++ + F+ + NL + + + Sbjct: 72 DDKDVEDVKSDIIKEQGFFIYPSELFENIRKEANNQDSKKDSKEKHNLNEKLQKIFKDIE 131 Query: 113 -------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 +F+D D +S +L ++ L K+ + IEL Sbjct: 132 NSAKGTKSETKIAGLFDDIDVNS--NKLGPTVIKRNERLRKLINGIADIELGDFKDHSID 189 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + +F TP++V L T + + I+ +YDP Sbjct: 190 AFGDAYEYLMGMYASSAGKSGGEFFTPQEVSELLTKITITGKSE--------IKRVYDPA 241 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + D GQE+ T+ +C M + + Sbjct: 242 CGSGSLLLKFKRILKDEEKKI------HYFGQEINITTYNLCRINMFLHDI-----GFEK 290 Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330 +I G TL++ + + F +SNPP+ KWE + + + R+ P L Sbjct: 291 FDIAHGDTLTEPKHLSDEPFDAIVSNPPYSIKWEGEDNTL-----LINDPRYSPAGILAP 345 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S F++H + L+ AAIV ++ G A E +IR++L++N+ IE I Sbjct: 346 KSKADFAFILHSLSWLDTAAL----AAIVCFPGIMYRGGA---EQKIRKYLIDNNYIECI 398 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LF+ T+IAT + +LS K K I+A++ + N ++D Sbjct: 399 IQLPDNLFYGTSIATCIMVLSKSK---IDSKTLFIDASEDYEKATN----NNKLSDKNIE 451 Query: 451 QILDIYVSRE 460 IL + +RE Sbjct: 452 DILSYFKARE 461 >gi|294619473|ref|ZP_06698917.1| type I restriction-modification system, M subunit [Enterococcus faecium E1679] gi|291594300|gb|EFF25730.1| type I restriction-modification system, M subunit [Enterococcus faecium E1679] Length = 515 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 118/492 (23%), Positives = 197/492 (40%), Gaps = 69/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54 M+ T A L + IWK A D+ G DF + +L R + Sbjct: 1 MSSATQ-RAKLQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDDSVN 59 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD---- 109 E + I ++ K GY Y S+ + NT +L + +A+ FS Sbjct: 60 YAELSDDVITNEIKEDAI-KTKGYFIY-PSQMFSRIAKTANTNESLNTDLAAIFSAIESS 117 Query: 110 --------NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVM 155 + K +F DF +T RL +K L + K G++ + + Sbjct: 118 ANGYPSELDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQIDLF 175 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP+ V L L + + K +YDP G Sbjct: 176 GDAYEFLISNYAANAGKSGGEFFTPQSVSSLIAQLAIHKQTTINK--------IYDPAAG 227 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A +GQE+ P T+ + M + + D + Sbjct: 228 SGSLLLQAKKQFDAHIIEDG------FYGQEINPTTYNLARMNMFLHNINYDKF-----H 276 Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G+TL + K F +SNPP+ KW +D RF P L S Sbjct: 277 IALGNTLLDPHYGEDKPFDAIVSNPPYSVKWIGSEDPT-----LINDERFAPAGVLAPKS 331 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L GRAAIV + G A E +IR++L++N+ +E I++ Sbjct: 332 KADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIIS 384 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LF+ T+IA + +LS K++ K Q I+A+ + + E I+ D+ +I Sbjct: 385 LAPNLFYGTSIAVNILVLSKHKSD---NKTQFIDASGI-EFYKKETN-NNILTDEHIAKI 439 Query: 453 LDIYVSRENGKF 464 + ++ S+E+ + Sbjct: 440 MSMFDSKEDIDY 451 >gi|317014951|gb|ADU82387.1| Type I restriction-modification enzyme subunit M [Helicobacter pylori Gambia94/24] Length = 817 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 121/595 (20%), Positives = 219/595 (36%), Gaps = 91/595 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G + L IA ++ + K + + DF+ Sbjct: 45 AKNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 A+L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-AKLGEGKAMTDTLSNLVKIFADLSLGTHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ + +I +G STLS F + Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPFFIKNGMLQ 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D ++ + K N RF G P +G FL+H+ L+ Sbjct: 259 TFDYVVANPPFSLKNWTDGLTIDPKSKQVINDHFNRFEDGTPPEKNGDFAFLLHIIKSLK 318 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 319 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + D ++++D + + + + Sbjct: 372 IVLDKENAHARKG-VFVIDASKDF---KKDGDKNR-LRDQDVQKMIDTFNAYKEIPYYSK 426 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 427 M---------------------VSLEAISLNDYNLNIPRYIASKQELEKDLFALINSHKA 465 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582 Y + K LK K A + + + E+ Sbjct: 466 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSLEYQ 520 >gi|294670041|ref|ZP_06734998.1| type I restriction-modification system, M subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308162|gb|EFE49405.1| type I restriction-modification system, M subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 437 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 102/460 (22%), Positives = 177/460 (38%), Gaps = 62/460 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54 M + T A L IWK A+++ G DF + +L R + A Sbjct: 9 MMKSTQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 68 Query: 55 VREKYLAFGGSNIDLESFVKV-----AGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108 + I ++ F N +E + +T + + +S S Sbjct: 69 YAAMSDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFIAIESSAS 128 Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157 + + +F+ DF +T +RL +K L + K ++ + + + Sbjct: 129 GYPSEQDIRGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVEELDFGNFEDHHIDLFGD 186 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+LI + + + +F TP++V L L + + + K +YDP CG+G Sbjct: 187 AYEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYDPACGSG 238 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + GQE+ T+ + M + + + +I+ Sbjct: 239 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYN-----QFHIE 287 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G TL+ + F +SNPP+ W D RF P L S Sbjct: 288 LGDTLTNPKLKDGKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 342 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H N L +G GRAAIV + G A E +IR++L+E + +E ++AL Sbjct: 343 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 395 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +LF+ T+IA + +LS K +Q I+A+ + Sbjct: 396 PNLFYGTSIAVNILVLSKHK---DNTDIQFIDASGFFKKK 432 >gi|94263927|ref|ZP_01287730.1| N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93455672|gb|EAT05851.1| N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 425 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 107/447 (23%), Positives = 185/447 (41%), Gaps = 53/447 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M G SL ++IW A + G + + ILP +RL + + + + Sbjct: 1 MANNNGRGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRLCDVFDDEVNRIAAEVG 60 Query: 61 AFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLES---YIASFSD 109 + + +++ K+ FY S +S+ S + + IA + Sbjct: 61 SRKKAFQLVKADHKLV--RFYLPLLPDDPEDSVWSVIRKLSDKIGEGVTTHMRAIAKENP 118 Query: 110 NAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + I + DF++T R L + + S L + V ++ YE+LIR+F Sbjct: 119 GLQGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFA 178 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + A +F TP +V + + +L P +YDPTCG+GG L + Sbjct: 179 EGGGQSAGEFYTPPEVGAIMSKVL----------QPEPGMEIYDPTCGSGGLLIKCEIAM 228 Query: 228 ADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + K +GQE +T A+ M+I +E + I+ G T Sbjct: 229 EEAAKGKKRTVAPLKLYGQEYTADTWAMANMNMIIHDMEGE--------IEIGDTFKNPK 280 Query: 287 FTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFL 339 F K+ F ++NP + + W E ++ N EL RF G G P ++ Sbjct: 281 FRNKQGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKFSADWGWV 335 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTD 396 H+ L GRAA+VL + G +G E +R+W +++DLIE+++ LP + Sbjct: 336 QHMHASLNEK----GRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPEN 391 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQ 423 LF+ T + L+ K+++R+GKV Sbjct: 392 LFYNTTAPGIVLFLNKAKSKKRKGKVL 418 >gi|167854665|ref|ZP_02477445.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus parasuis 29755] gi|167854202|gb|EDS25436.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus parasuis 29755] Length = 515 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 108/490 (22%), Positives = 188/490 (38%), Gaps = 65/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M A L IW+ A ++ G DF + +L R + + E Sbjct: 1 MIISIQQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN 60 Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEY-SLSTLGSTN---------TRNNLESYI 104 S+ D + +K GY Y + + ++ TN ++E+ Sbjct: 61 YAQFSDDDPILEQIKDDTIKSKGYFIYPSQLFENVVKDAHTNPTLNIELAEIFADIENSA 120 Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + + + I F DF + RL +K L + K ++ + + Sbjct: 121 NGY-PSEQDIKGLFADFDTRSNRLGNTVADKNKRLTAVLKGVEELDFGKFEDNHIDLFGD 179 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP++V L L L + K +YDP G+G Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKTVNK--------IYDPAAGSG 231 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A D GQE+ T+ + M + + D +I Sbjct: 232 SLLLQAKKQFDDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL F + F +SNPP+ +W D++ RF P L S Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPT-----LINDERFAPAGILAPKSKA 335 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G A E +IR++L++N+ +E ++AL Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+IA + +LS K + K Q I+A+ L+ N ++ D+ +I+ Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441 Query: 455 IYVSRENGKF 464 ++ + + Sbjct: 442 LFSEKTDVPH 451 >gi|326406200|gb|ADZ63271.1| type I restriction-modification system, M subunit [Lactococcus lactis subsp. lactis CV56] Length = 859 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 103/527 (19%), Positives = 188/527 (35%), Gaps = 79/527 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------------RS 53 ++ + +W A +L G + + +L + L T Sbjct: 2 TTSEEIKKRLWDGATELRGSMDASRYKDYMLGLMFYKFLSDKTLETFRNTAGLGRISESD 61 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASF-- 107 V E +L+ ++ F + NT + + + SF Sbjct: 62 LVEEYTQNREDLGEELDKMIQQVLGYFVAPEYLYQKWIKDINTGDFEVQKVTDSLNSFEK 121 Query: 108 -------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155 S + K +F T L E++ + + F+ +++ V+ Sbjct: 122 TIAVTGESADFKGLFSSSTLDLTDTALGSNLNERSKNIKALINLFADLDMV-ALQKSDVL 180 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+LI +F E + A +F TPR V + ++ I+++YDPT G Sbjct: 181 GDAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIVA---------KTSNIQSIYDPTVG 231 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L H+ ++ L +GQE T+ + +L+ + + Sbjct: 232 SGSLLLTVGKHL-----SKEVQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKMT----- 281 Query: 276 IQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327 ++ TLS D +F + NPP+ K RF Sbjct: 282 VRNADTLSHDWPEDPSRPNVGVQFDAVVMNPPYSL------KDWNKAGLKISDPRFEIAG 335 Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LP S G FL+H L G AIVL LF G E +IR+ LL+ + Sbjct: 336 TLPPDSKGDFAFLLHGLFHL----GTNGTMAIVLPHGVLFRGG---SEGDIRQRLLDKNQ 388 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+ I+ LP+ +F T I + IL + V +I+A+ + + K+ ++ + Sbjct: 389 IDTIIGLPSGMFTNTGIPVIVMILKKNRP--VGEPVLVIDASRSFIKV----GKQNVLQE 442 Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 +I+D Y SR + +S + ++ + P + D+ Sbjct: 443 KDIAKIVDTYSSRREIEGYSYLATHKEIIANEWNMNIPRYVEADNDE 489 >gi|315585917|gb|ADU40298.1| type I restriction-modification system protein [Helicobacter pylori 35A] Length = 820 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 120/596 (20%), Positives = 221/596 (37%), Gaps = 87/596 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 + + S ++V FY E L+ G + L IA ++ K + + DF+ Sbjct: 48 DAKNNTYSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNGLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 210 KNGLTIYGQEKDISTTALCRMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 470 SYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525 >gi|295107905|emb|CBL21858.1| type I restriction system adenine methylase (hsdM) [Ruminococcus obeum A2-162] Length = 852 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 101/496 (20%), Positives = 191/496 (38%), Gaps = 70/496 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65 + LAN IW++A + + ++ IL F + L T ++ Sbjct: 2 NKQQLANRIWESANRMRSKIEANEYKDYILGFIFYKYLSD----TEVEWLKENDFTDEDI 57 Query: 66 --NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASF----SDNAKAIF 115 D E+ V Y S + +G+ + +N+ +++F S K +F Sbjct: 58 RTLADFETVKYVQDNLGYFISYENLYSTWINMGNDFSVSNVTDALSAFSRLISPTHKPVF 117 Query: 116 EDF--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 E+ + +++L + + + I V+ IYE+LI +F S Sbjct: 118 ENIFRTLETGLSKLGDTSGARTKAIRGLLQLIRDI-PMDGRQDYDVLGFIYEYLIEKFAS 176 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + +YDPT G+G L N Sbjct: 177 NAGKKAGEFYTPHEVSFLMSEIVAHHLRDRNEIK------IYDPTSGSGSLLI---NIGR 227 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + + + QEL+ T+ + +++R ++ D + G TL +D Sbjct: 228 SVAKYVGSDNNIKYYAQELKENTYNLTRMNLIMRGIKPDNIVT-----RNGDTLEEDWPF 282 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + +SNPP+ + W+ + RF GL Sbjct: 283 FDDNDPVNTYDPVYVDAVVSNPPYSQVWDPANKEHDPR-----YSRF--GLAPKGKADYA 335 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H ++ G IVL LF G E EIR+ L+EN+ I+ I+ LP ++ Sbjct: 336 FLLHDLFHMKPD----GVMTIVLPHGVLFRGGE---EGEIRKKLIENNHIDTIIGLPANI 388 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T I T + +L K + + +I+A+ + K + ++I+D+ Sbjct: 389 FYGTGIPTIVMVL---KQKRDNTDILIIDASKGFVKD----GKNNKLRACDIKKIVDVVK 441 Query: 458 SRENGK-FSRMLDYRT 472 +R+ + +SR++ Sbjct: 442 ARKKIERYSRVITKDE 457 >gi|171779403|ref|ZP_02920367.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282020|gb|EDT47451.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 850 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 107/498 (21%), Positives = 191/498 (38%), Gaps = 72/498 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------- 59 + LA+ IW++A + + ++ IL F + L ++ Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLS----EQEEKYLKENDWTDKYL 57 Query: 60 -LAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKA 113 +ES K GY YN + GS + ++ +++FS K Sbjct: 58 CELTEEDPEVVESIQKNLGYFISYNNLFSTWIKKGSDFSVQDVRDALSAFSRLIDSAHKD 117 Query: 114 IFED-FD-FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 +FE FD + +++L + + + I + V+ IYE+LI F Sbjct: 118 VFEGVFDTLQTGLSKLGEGSASQTKAISDLIYLIRDIPMDGK-QDYDVLGFIYEYLISMF 176 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + A +F TP +V L + ++ + +YDPT G+G L N Sbjct: 177 AANAGKKAGEFYTPHEVSLLMSEIVAEHLKDRESIK------IYDPTSGSGSLLI---NI 227 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + QEL+ T+ + +++R + D + G TL D Sbjct: 228 GKSASKYISNKDNIKYYAQELKQNTYNLTRMNLVMRGILPDNIVT-----RNGDTLEDDW 282 Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + +SNPP+ + W+ + RF GL Sbjct: 283 PYFDDKDPIATYEPLYVDAVVSNPPYSQSWDPTDKETDPR-----YARF--GLAPKGKAD 335 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL+H ++ G IVL LF G E EIR+ L+E + I+AI+ LP+ Sbjct: 336 YAFLLHDLFHIKSD----GIMTIVLPHGVLFRGGE---EGEIRKNLIEQNHIDAIIGLPS 388 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 ++FF T I T + IL K + V +++A+ + K + ++I+D+ Sbjct: 389 NIFFGTGIPTIIMIL---KQKRENTDVLVVDASKGFIK----SGKNNKLRASDIKRIVDV 441 Query: 456 YVSREN-GKFSRMLDYRT 472 ++REN FSR++ Sbjct: 442 VINRENVANFSRVVSRDE 459 >gi|296454640|ref|YP_003661783.1| type I restriction system adenine methylase HsdM [Bifidobacterium longum subsp. longum JDM301] gi|296184071|gb|ADH00953.1| type I restriction system adenine methylase HsdM [Bifidobacterium longum subsp. longum JDM301] Length = 855 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 106/518 (20%), Positives = 188/518 (36%), Gaps = 70/518 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAF 62 + LA IW++A + + ++ IL F + L L + Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIAHLRAEDWGAEDLKGLD 61 Query: 63 GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113 ++ + GY YN + T ++ +++F N Sbjct: 62 ENDAETVQYVRDLCGYFISYNNLFSTWIASQGDFTIADVRDALSAFERNIDPARKRVFVG 121 Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IF+ + +++L ++ + + I + IYE+LI F S Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAVRDLICLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + + +YDPT G+G L VA Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 233 RRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284 Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + +SNPP+ + WE + GE RF G+ S Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L G IVL LF G E IRR L+E I+AI+ LP + Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVEKHHIQAIIGLPAN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T I T + +L + + V +++A+ +T K + ++I+D Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442 Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 +R+ KFSR++ + P + + Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480 >gi|317182738|dbj|BAJ60522.1| Type I restriction enzyme M protein [Helicobacter pylori F57] Length = 820 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 119/583 (20%), Positives = 217/583 (37%), Gaps = 87/583 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 + + S ++V FY E L+ G + L IA ++ K + + DF+ Sbjct: 48 DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIATKQESEKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 Y + K LK K A + Sbjct: 470 SYLPKNEIEAYAPYFKVFKELKNTLFKKSDKEGYYALKTECEN 512 >gi|317179715|dbj|BAJ57503.1| Type I restriction enzyme M protein [Helicobacter pylori F30] Length = 817 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 118/583 (20%), Positives = 214/583 (36%), Gaps = 91/583 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G + L IA ++ + K + + DF+ Sbjct: 45 ARNNTDSAIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAIIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 206 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK 318 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 319 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 372 IVLDKENACTRKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 426 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 427 M---------------------VSLEEISTNDYNLNIARYIAAKQESEKDLFALINSHKA 465 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 Y + K LK K A + Sbjct: 466 SYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYCALKTECEN 508 >gi|289624201|ref|ZP_06457155.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869549|gb|EGH04258.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 473 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 110/477 (23%), Positives = 177/477 (37%), Gaps = 68/477 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP---------T 51 MT A L IW A D+ G DF + +L R + Sbjct: 1 MT-SAQQRADLQRQIWAIANDVRGAVDGWDFKQYVLGTLFYRFISENFVDYITGGDSSVD 59 Query: 52 RSAVREKY---LAFGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTNTRNNLESYI 104 +A+ + A I + + F N S + +E+ Sbjct: 60 YAAMEDDDPLIAAAKDDAIKTKGYFIAPSQLFSNVAAKASTNDSLNTDLKRIFDAIENSP 119 Query: 105 ASFSDN--AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-S 156 ++ K +F DF +T RL +K L + K + +E + Sbjct: 120 NGYASEQYIKGLFA--DFDTTSNRLGNTVADKNKRLADVLKGVNKLEFGSFDASHIDLFG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE LI + + + +F TP+ V L L + ++ K +YDP CG+ Sbjct: 178 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGS 229 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A H GQE+ T+ + M + + D +I Sbjct: 230 GSLLLQAKKHFDAHVIQDG------FFGQEVNHTTYNLARMNMFLHNINYDKF-----DI 278 Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 Q G TL F + F +SNPP+ KW D RF P L S Sbjct: 279 QLGDTLRHPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSK 333 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 F++H + L +G GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 334 ADFAFVLHALSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISL 386 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 +LFF T IA + +LS K + Q I+A+ L+ +G ++ + R Sbjct: 387 APNLFFGTTIAVNILVLSKHKLDTTT---QFIDASALF----KKGTNNNLLENAHIR 436 >gi|161528114|ref|YP_001581940.1| type I restriction-modification system subunit M [Nitrosopumilus maritimus SCM1] gi|160339415|gb|ABX12502.1| type I restriction-modification system, M subunit [Nitrosopumilus maritimus SCM1] Length = 523 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 116/560 (20%), Positives = 202/560 (36%), Gaps = 81/560 (14%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 ++ + L ++ A+ L ++ K +L L+RL E + Sbjct: 3 SDQKLTFEQLEQRLFDAADILRKHLDASENRKPVLTLLFLKRLNDIFEENVEKLM----- 57 Query: 62 FGGSNIDLESFVKVAGYS-FYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIF--- 115 + + + FY + + L + + + + D + Sbjct: 58 -KDEGLSKKEAENKRRHPIFYLPEDTRWNKLQNVSEDVGSKIIEICKKIEDANQKKLGGT 116 Query: 116 ---EDFDFSSTIARLEKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYEHLIRRF 166 +F+ L K+ +FS + + D + + + YE L+ F Sbjct: 117 MMVSEFNIKEKYPD----TALVKLIDHFSTTDEGYFRLRNSDLENEDIFGDAYEQLLEMF 172 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 SE + F TPR VV L L+ P + DPTCG+GG L + + Sbjct: 173 ASETKKKGGQFYTPRKVVQLLVELM----------EPKYDYRINDPTCGSGGMLIHSRQY 222 Query: 227 VADCGSHHKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 V K L HGQ+ +T +C M+I + S +I+ Sbjct: 223 VEKSLKKEKKSSKEIEELLKNLTLHGQDSNIDTVNMCKMNMVIHGV-------PSFSIEW 275 Query: 279 GSTLSKDLFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD- 333 G L F + L+N PF + WE +N GRF G+ D Sbjct: 276 GDVLESPKFVKDGKLIEYDRVLANFPFSENWEASGK------ENDGYGRFKYGIAPAKDK 329 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL--------END 385 F++H+ + L N G+AAIV S LF G S E +IR ++ + D Sbjct: 330 ADFAFILHMLSSL----NENGKAAIVCSQGVLFRG---SSEQKIRENMIAGNKDENLQGD 382 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 +IEAI+ALP LF+ T I + IL+ K +ER+ K+ I A + + GK R + Sbjct: 383 MIEAIIALPVALFYGTGIPACVLILNKNKPKERKNKILFIYAANEFQE----GKVRNKLR 438 Query: 446 DDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 D I+ + + + K+ + + + P + ++ + Sbjct: 439 DKDIEHIVKAFKAFKDEDKYCHVAELDEIRENEFNLNVPRYVDISEEEKIIDIQATIDEL 498 Query: 505 RKLSPLHQSFWLDILKPMMQ 524 +KL L + + + + Sbjct: 499 KKLDKERDELELKVKQDLKE 518 >gi|320536229|ref|ZP_08036275.1| type I restriction-modification system, M subunit [Treponema phagedenis F0421] gi|320146931|gb|EFW38501.1| type I restriction-modification system, M subunit [Treponema phagedenis F0421] Length = 526 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 124/513 (24%), Positives = 197/513 (38%), Gaps = 84/513 (16%) Query: 1 MTEFTG------SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------- 46 M T A L IW A+++ G DF + IL R + Sbjct: 1 MANNTNGSNGMVQRAELHRKIWAIADEVRGAVDGWDFKQYILGILFYRFISENMMEFFNS 60 Query: 47 --------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 + + + +E F + ++ + F + F N + + + N Sbjct: 61 AEHEAGDPEFDYAKISDKEAEKDFRPNTVEAKGFFILPSQLFKNVVK---TARKNENLNT 117 Query: 99 NLESYIASF--------SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE 144 +L + S S+N K +FED D +T RL EK L I S I Sbjct: 118 DLANIFKSIESSAVGFKSENDIKGLFEDVD--TTSNRLGGTVAEKNSRLADILIGISEIN 175 Query: 145 LHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 D + YE+LI + S + +F TP+ V L L++D + K Sbjct: 176 FGNFQDNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTNVNK--- 232 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 +YDPTCG+G L + GQE+ + M + Sbjct: 233 -----VYDPTCGSGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHN 281 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + + + +I++G TL L ++ F +SNPP+ KW D D Sbjct: 282 VNYN-----NFSIKRGDTLLNPLHNNEKPFDAIVSNPPYSIKWIGDDDPT-----LINDA 331 Query: 323 RFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 RF P L S F+MH + L GRAAIV + A E IR++ Sbjct: 332 RFAPAGKLAPKSYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---ELTIRKY 384 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 L++N+ I+ I+ LP +LFF T+IAT + +++ KTE K I+A + N Sbjct: 385 LVDNNFIDCIIQLPENLFFGTSIATCVLVMAKNKTE---NKTLFIDAGKEFKKETN---- 437 Query: 441 RRIINDDQRRQILDIYVSRENGKF-SRMLDYRT 472 I+ D +I+ + R N ++ SR++D Sbjct: 438 NNILEDKNIEKIVAEFRDRTNIEYFSRLVDNSE 470 >gi|269115295|ref|YP_003303058.1| Type I restriction enzyme M protein [Mycoplasma hominis] gi|268322920|emb|CAX37655.1| Type I restriction enzyme M protein [Mycoplasma hominis ATCC 23114] Length = 520 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 111/505 (21%), Positives = 192/505 (38%), Gaps = 74/505 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----RSAV 55 M L IW A L G DF + +L R + + R A Sbjct: 1 MAINNQERDELHKKIWDIANRLRGSIDGWDFKQYVLGIMFYRYISENIATYANNRQRQAG 60 Query: 56 REKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 E + S+ + + + G+ F SE ++ + + T N L + + N Sbjct: 61 IEDFDYTTLSDEEALTGRDDLINEKGF-FILPSELFINVVKNATTNNCLNETLDNIFKNI 119 Query: 112 K-------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152 + +F D D +S +L E+ L I + + ++L Sbjct: 120 ESSAKGQQSENDFSGLFNDVDVNSQ--KLGRSVNERNKKLAAILQEIAAMKLGNYQDNSI 177 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + S + ++ TP++V L T + + + +YDP Sbjct: 178 DAFGDAYEYLMSMYASNAGKSGGEYFTPQEVSELLTKIAVFNKK--------KVNRVYDP 229 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + + +GQE+ T+ +C M + + D Sbjct: 230 ACGSGSLLLQTIKVLGKENIKDG------FYGQEVNLTTYNLCRINMFLHDIGFDKF--- 280 Query: 273 SKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 NI G TL +R F +SNPP+ KWE + + + RF P Sbjct: 281 --NIYNGDTLLSPSPEHQRKEPFDVIVSNPPYSIKWEGEDNPL-----LINDQRFSPAGI 333 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S F++H + L G AAIV ++ G A E +IR++L+EN+ I Sbjct: 334 LAPKSKADFAFILHSLSWLATD----GVAAIVCFPGIMYRGGA---EQKIRQYLVENNFI 386 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 +AI+ LP++LFF T+I+T + +L K + I+A+ + + N + Sbjct: 387 DAIIQLPSNLFFGTSISTCIMVLKKSK---IDNNILFIDASQEFLKVTN----NNKLTSQ 439 Query: 448 QRRQILDIYVSRENGKFSRMLDYRT 472 I+D Y R++ + L Sbjct: 440 NINNIIDYYGQRKDISYISKLASVE 464 >gi|253315161|ref|ZP_04838374.1| type I restriction enzyme EcoR124II M protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 446 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 107/468 (22%), Positives = 181/468 (38%), Gaps = 68/468 (14%) Query: 25 DFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNIDLESFVKVAGYS 79 + ++F IL R L E + A+ + ++ Sbjct: 1 NMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQV 60 Query: 80 FYNTSE---------------YSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST 123 Y + + L +T R S + S+N +F D D SST Sbjct: 61 GYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSST 119 Query: 124 ---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP Sbjct: 120 RLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTP 179 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + V + ++ D D +R +YDPTCG+G L K + Sbjct: 180 QQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVY 221 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 GQE T+ + ML+ + + I+ TL F G F ++NPP Sbjct: 222 RYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDTLENPAFLGNTFDAVIANPP 276 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + KW D E +G L S F+ H+ + L+ G A+VL Sbjct: 277 YSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVL 327 Query: 361 SSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ Sbjct: 328 PHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQD 382 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 V I+A++ + GK + ++D Q +I+D Y + K+S Sbjct: 383 DNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKATIDKYSY 426 >gi|315636819|ref|ZP_07892044.1| type I restriction-modification system DNA-methyltransferase [Arcobacter butzleri JV22] gi|315478873|gb|EFU69581.1| type I restriction-modification system DNA-methyltransferase [Arcobacter butzleri JV22] Length = 811 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 118/564 (20%), Positives = 220/564 (39%), Gaps = 83/564 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W +A++L G +++ +L ++ + Sbjct: 1 MAIKKTELYSSLWASADELRGGMDASEYKNYVLTLLFMKYVSD----------------- 43 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 + G SF + L + + IA ++ + K I + DF Sbjct: 44 KKDDANSLIDVPQGASFK-----DMVALDGDKEIGDKINKIIAKLAEKNDLKGIIDTADF 98 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + + +L L K+ K F + L +T D ++ + YE+L+R F +E + Sbjct: 99 NDS-TKLGSGKQMVDTLSKLIKIFDNLNLGSNTAEGDDLLGDAYEYLMRHFATESGKSKG 157 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ E+ +T+YDPTCG+G L A + Sbjct: 158 QFYTPSEVSTILPQII------GIDENTTAKQTIYDPTCGSGSLLLKASSL--------- 202 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK--- 290 P L +GQE E T A+C M++ + I G STL+ F + Sbjct: 203 APNGLSIYGQEKEVSTTALCKMNMILHN-------NAEAVIAPGGQSTLANPFFEDEPDV 255 Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346 F + ++NPPF K + + RF G P +G FL+H+ + Sbjct: 256 KLTTFDFVVANPPFSLKAWTNGVESPD-----KYSRFEGFVTPPEKNGDYAFLLHICKSI 310 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ A++L LF G A E IR L+ I+ I+ LP +LF+ T I Sbjct: 311 KS----NGKGAVILPHGVLFRGNA---EGVIREKLIRKGWIKGIIGLPANLFYGTGIPAC 363 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + +L K + R G + +I+A+ + + +G K R + +I+D + + +S Sbjct: 364 IIVLDKEKAQNRSG-IFMIDASKGF---KKDGNKNR-LRSQDVHKIVDTFNKTLEIEKYS 418 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILKPMM 523 +M+ R + P + + + L A + + + + D+ K + Sbjct: 419 KMVTLRDIELNEYNLNIPRYIDSS-ENEDIQDLYAHLNGGIPNVDIENLKEYWDVFKTLK 477 Query: 524 QQIYPYGWAESFVKESIKSNEAKT 547 +++ + + I+SNE K+ Sbjct: 478 SELFAPNIKDGYSNAKIESNEIKS 501 >gi|310287614|ref|YP_003938872.1| HsdM-like protein of Type I restriction-modification system [Bifidobacterium bifidum S17] gi|309251550|gb|ADO53298.1| HsdM-like protein of Type I restriction-modification system [Bifidobacterium bifidum S17] Length = 855 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 106/518 (20%), Positives = 188/518 (36%), Gaps = 70/518 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAV-REKYLAFG 63 + LA IW++A + + ++ IL F + L + E Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMGNEDLEELR 61 Query: 64 GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113 + + +V+ F Y+ + N+ +++F N Sbjct: 62 EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121 Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IF+ + +++L ++ + I + IYE+LI F S Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + + +YDPT G+G L VA Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 233 RRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284 Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + +SNPP+ + WE + GE RF G+ S Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L G IVL LF G E IRR L+EN I+AI+ LP + Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T I T + +L + + V +++A+ +T K + ++I+D Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442 Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 +R+ KFSR++ + P + + Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480 >gi|288563204|pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification System Methyltransferase Subunit From Streptococcus Thermophilus, Northeast Structural Genomics Consortium Target Sur80 gi|288563205|pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification System Methyltransferase Subunit From Streptococcus Thermophilus, Northeast Structural Genomics Consortium Target Sur80 Length = 542 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 119/594 (20%), Positives = 209/594 (35%), Gaps = 94/594 (15%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEP 50 +E T ++ SL +W +A+ L D+ +L + L Sbjct: 2 SETTQTSQSLYQALWNSADVLRSKXDANDYKSYLLGXVFYKYLSDKXLFFVAETXEEETE 61 Query: 51 TRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIAS 106 + Y + E + S+ + + + L + LE Sbjct: 62 SLDEALAVYRKYYEDEETHEDLLAVITDEXSYAIHPDLTFTALVERVNDGSFQLEDLAQG 121 Query: 107 F-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155 F SD +FED D S +L ++ + + K + +++ + Sbjct: 122 FRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVXKELAVLDV--AGHAGDXL 177 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+LI +F ++ + A +F TP+ V L T + + TLYD T G Sbjct: 178 GDAYEYLIGQFATDSGKKAGEFYTPQPVAKLXTQIAFLGRED------KQGFTLYDATXG 231 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L +A + + P +V GQEL T+ + ++ + + + Sbjct: 232 SGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARXNXILHGVPIENQF----- 279 Query: 276 IQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKI 331 + TL +D F L NPP+ KW + RF P L Sbjct: 280 LHNADTLDEDWPTQEPTNFDGVLXNPPYSAKWSASSGFXD-------DPRFSPFGKLAPK 332 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G AIVL LF G A E IR+ LLE I+ ++ Sbjct: 333 SKADFAFLLHGYYHLKQD---NGVXAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 386 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP ++FF T+I T + IL +T V I+A+ + GK + I D + Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIXTDAHIEK 439 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 IL+ Y SRE+ + + + + + ++ + Sbjct: 440 ILNAYKSREDID---------------------KFAHLASFEEIVENDYNLNIPRYVDTF 478 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564 + ++ L ++ +I S+ + + AF+ AF Sbjct: 479 EEEEVEPLTEIVAKINQTNATIESQTASLLDXLGQLHGTTPEADEELKAFVKAF 532 >gi|332674320|gb|AEE71137.1| type I restriction enzyme M protein [Helicobacter pylori 83] Length = 820 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 120/596 (20%), Positives = 221/596 (37%), Gaps = 87/596 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 + + S ++V FY E L+ G + L IA ++ K + + DF+ Sbjct: 48 DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGTIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKSR-LREQDVQKMIDTFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + Q D+ + Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 470 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525 >gi|208435398|ref|YP_002267064.1| typeI restriction enzyme M protein [Helicobacter pylori G27] gi|208433327|gb|ACI28198.1| typeI restriction enzyme M protein [Helicobacter pylori G27] Length = 814 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 119/562 (21%), Positives = 220/562 (39%), Gaps = 73/562 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G+ + L IA ++ + + + + DF+ Sbjct: 45 ARNNNFSEIEVPQG-CFY---EDILALEGNKEIGDKLNKIIAKIAERNDLEGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ + +I +G STLS LF K Sbjct: 206 KNGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPLFIENGMLK 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK 318 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 319 NT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 +L R+G V +I+A+ + + +G K R + + ++++D + + + +S+ Sbjct: 372 IVLDKENARTRKG-VFVIDASKDF---KKDGNKNR-LREQDVQKMIDTFNAYKEIPHYSK 426 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSPLHQSFWLDILKPMMQ 524 M+ + P ++ + A + + K + + K + Sbjct: 427 MVSLEEISANDYNLNIPRYITTKQESEKDLFALINSPSYLPKNEIKAYDPYFQVFKELKN 486 Query: 525 QIYPYGWAESFVKESIKSNEAK 546 ++ E + + K Sbjct: 487 TLFKKSDKEGYYALKTECENIK 508 >gi|257889088|ref|ZP_05668741.1| type I restriction-modification system M subunit [Enterococcus faecium 1,141,733] gi|257825160|gb|EEV52074.1| type I restriction-modification system M subunit [Enterococcus faecium 1,141,733] Length = 512 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 96/527 (18%), Positives = 201/527 (38%), Gaps = 69/527 (13%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70 +++ +L + L L E+Y + Sbjct: 1 MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDN---AKAIFEDFDFS 121 + Y + L + + + +L S +F+D D Sbjct: 61 LIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQLSSTYNQFNGLFDDVDLQ 120 Query: 122 ST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 S ++ + ++ K + +++ V+ + YE LI +F SE + A +F Sbjct: 121 SKKLGTDEQQRNVTITEVIKKLNDVDVL--GHDGDVIGDAYEFLISQFASEAGKKAGEFY 178 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V + ++ + +++DPT G+G + + N++ Sbjct: 179 TPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT-------HTD 225 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296 + HGQEL T+ + +++ ++++ N++ G TL+KD T + + + + Sbjct: 226 NVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTDEPYTFDAVV 280 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPP+ W D ++ R+G L S FL+H L+ G Sbjct: 281 MNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKET----GTM 331 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIVL LF G A E IR+ LLE+ I A++ +P +LFF T+I T + +L + Sbjct: 332 AIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQT 388 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475 + I+A+ + GK + ++++ ++IL+ Y R++ + ++ + + Sbjct: 389 R---DILFIDASREFVK----GKNQNKLSEENIQKILETYAERKDVEKYAHLATFDEIKE 441 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + P + ++ + + +K+ Q ++L+ + Sbjct: 442 NDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 488 >gi|56419915|ref|YP_147233.1| type I restriction-modification system DNA methylase [Geobacillus kaustophilus HTA426] gi|56379757|dbj|BAD75665.1| type I restriction-modification system DNA methylase [Geobacillus kaustophilus HTA426] Length = 503 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 97/547 (17%), Positives = 193/547 (35%), Gaps = 73/547 (13%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-- 74 + A + G D+ +LP LR L E R + + G + ++ Sbjct: 3 EAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPGSDWYTEDDEMRQI 62 Query: 75 --------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 A F E S S + + N++ + + + E+ + + R Sbjct: 63 IITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGILPR 120 Query: 127 LEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + L + + FS +T ++ YE+ I F + +F TP Sbjct: 121 IYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGEFFTP 180 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V L A+L ++DP CG+GG + + L Sbjct: 181 SSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKHAL 222 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +GQE T + +L+ + ++ I+ G +L D F + Y ++NPP Sbjct: 223 SFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYVIANPP 274 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F + + + R + S+ + +++ H L N G A V+ Sbjct: 275 FN------QKDWGADRLSKNDPRLIGPVTN-SNANYMWMQHFLYHL----NDTGTAGFVM 323 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418 ++ + E E+R+ L++ I+ IV LP LFF T I L+ LS + + Sbjct: 324 ANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKNGY 381 Query: 419 ---RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 + ++ I+A + T + K++ ++ ++ +I +Y + + D G+ Sbjct: 382 RARKNEILFIDARKMGTLVSR---KQKALSKEEIDKIAAVYRAYKYDGAEGYEDIA--GF 436 Query: 476 RRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIYPY 529 ++ + + L E D+ + K++ L Q + Q Sbjct: 437 CKVATIEEVRANDYKLTPGIYVGTEVSNEDDVPFEEKMAELTQRLLEQFEESNRLQEKIK 496 Query: 530 GWAESFV 536 E + Sbjct: 497 QDLEGLM 503 >gi|261838807|gb|ACX98573.1| type I R-M system modification subunit [Helicobacter pylori 51] Length = 816 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 118/596 (19%), Positives = 219/596 (36%), Gaps = 91/596 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + + + + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD---------KARNNTYS 51 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 + FY E L+ G + L IA ++ K + + DF+ Sbjct: 52 EIEVP--------KGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 206 KNGLSIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 318 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 319 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 372 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 426 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + ++ + ++ + P Q D+ + Sbjct: 427 M---------------------VSLEEISANDYNLNIARYIPTKQESQKDLFALINSHKA 465 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 Y + K LK K A + + + E+ Sbjct: 466 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSLEYQA 521 >gi|257076849|ref|ZP_05571210.1| type I restriction-modification system methylation subunit [Ferroplasma acidarmanus fer1] Length = 507 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 95/478 (19%), Positives = 182/478 (38%), Gaps = 49/478 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + A+ + + IL ++RL + + + G + Sbjct: 10 TKNDLVKLVDNAADLIRTSVD---YK-YILVLLFIKRLSDRWKEEIEDAMSEIMEETGID 65 Query: 67 IDLESFVKVAG--YSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAKAIFEDFD 119 + V+ +SF + + N+ I + + D Sbjct: 66 ESEAAKRAVSNEFHSFMVPENVLWNNIRKDRDKLTENMSRAINEIAKQNKELDGVVNRID 125 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F E LL ++ F + M + YEH++ RF E ++ + T Sbjct: 126 FIDFTKTRENRILLEQLFALFDKYNFSNKCIEGDAMGDAYEHILMRFAPEKAKE-GEVYT 184 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR+VV L +L P ++YDP CG+GG L +A HV K + Sbjct: 185 PREVVRLMVDIL----------DPQPGMSVYDPACGSGGMLIEAYEHVKSRMGVDKANRV 234 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYC 295 +G+E P T+A+ ++ + +++ G +L F + F + Sbjct: 235 G-LYGEERSPTTYALAKMNTILHDI-------SESHLEVGDSLLYPKFKTASGLRHFDFV 286 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPP+ +K + + E K+ R+ G G ++ H+ + + Sbjct: 287 LANPPWSQKGYGEDTLKQAEFKD----RYAYGFVPQRYGDWAWIEHMLYTSK------SK 336 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A+++ LF E IR+ +++ L++++ LP +F+ T A + I + K Sbjct: 337 VAVIMDQGALFRSN---SEKIIRQKIVDEKLLDSVTLLPEKIFYNTGAAGAILIFNKEKQ 393 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 EE R KV I+A+ + + +K II +D +I+ Y E+ FS+++ Sbjct: 394 EEYRDKVLFIDASREYGKHPDM-RKLNIITNDNIDRIVSAYKKFESIDGFSKVVSVDE 450 >gi|24215896|ref|NP_713377.1| type I restriction enzyme [Leptospira interrogans serovar Lai str. 56601] gi|24197104|gb|AAN50395.1| type I restriction enzyme [Leptospira interrogans serovar Lai str. 56601] Length = 513 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 109/490 (22%), Positives = 183/490 (37%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54 MT A+L IW+ A D+ G DF + +L R + Sbjct: 1 MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ 59 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST----------NTRNNLESYI 104 + I ++ K GY Y + ++ + + ++ES Sbjct: 60 YSKLNDKKITKEIKDDAI-KTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSA 118 Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 F + I F DF +T RL +K L + K + ++ + + Sbjct: 119 NGF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLTAVLKRVAELDFGDFDSSHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + I +YDP CG+G Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAI--------HKQTRINKIYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A D GQE+ T+ + M + + D +I+ Sbjct: 230 SLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL ++ F +SNPP+ W+ D RF P L S Sbjct: 279 LGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + A E +IR++L+ N+ +E +++L Sbjct: 334 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRSGA---EQKIRQYLVGNNFVETVISLA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T IA + +LS KT+ Q I+A+ L+ N I+ +D +I+ Sbjct: 387 PNLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETN----NNILTEDHIERIMQ 439 Query: 455 IYVSRENGKF 464 + S+ + + Sbjct: 440 TFDSKVDMEH 449 >gi|292492040|ref|YP_003527479.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosococcus halophilus Nc4] gi|291580635|gb|ADE15092.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosococcus halophilus Nc4] Length = 720 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 128/655 (19%), Positives = 232/655 (35%), Gaps = 96/655 (14%) Query: 6 GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 L + +W A++L D K +++ +L L+ + +A+ ++Y Sbjct: 4 EQLKQLEDDLWSAADNLRANSDLKASEYSTPVLGLIFLKFADINYRRHEAAILKEYQKLK 63 Query: 64 G-SNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNAKAIF 115 G + + VA FY S L S + +E I + + Sbjct: 64 GGRREKSLNEIAVARCGFYLPDHARYSHLLNLPESQDIAKAIEKAMEAIEEYKPELQGSL 123 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + E L + + + F I PD V IYE+ + +F +G Sbjct: 124 PKDGYYRLTRTGETEQLPFDLLRQFDNI---PDDASGDVFGQIYEYFLGKFALAEGQGGG 180 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TPR VV L ++ T++DP CG+GG + + + Sbjct: 181 EFFTPRSVVRLMVEII-----------EPHGGTVFDPACGSGGMFVQSAQFIERHREEFE 229 Query: 236 IPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-R 291 GQE ET + + + L I QG + D F + Sbjct: 230 AQGEDTSVFVSGQEKSSETVKLARMNLAVNGLRG--------QILQGISYYDDHFGSFGK 281 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKIS--------------DGSM 336 F Y L+NPPF + RF G+P+ + + Sbjct: 282 FDYVLANPPFNVDEVSLSGV-------EKDPRFNTYGIPRKKTKAKKSEQGKETVPNANY 334 Query: 337 LFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 L++ A L P + GGRAA+V+++S A E++IRR L+EN+LI ++ LP Sbjct: 335 LWINLFATSLREPDDKHPGGRAALVMANSA---SDARHSEADIRRTLIENNLIYGMLTLP 391 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ--I 452 +++F+ + LW KT+E ++ I+A +++T I R +++Q + I Sbjct: 392 SNMFYTVTLPATLWFFDKGKTDE---RILFIDARNIFTPIDRA---HREFSEEQIQNIAI 445 Query: 453 LDIYVSRENGKFSRMLDYRT-------FGYRRIKVLRPLRMSFILDKTGLARLEADI--T 503 + +F ++D RR ++ +LD + A + T Sbjct: 446 ISRLHKGRRDEFIALIDRYFEQGMARLVENRRQVEPVAEQLLAVLDDEAGKKAVASLVDT 505 Query: 504 WRKLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS--------K 554 W+ L+PL +++ + P + A E I ++AS Sbjct: 506 WKGLAPLQKAWARHRAVHPHPGPLPAGEGASEPKAEIIDQVNEAQQTLRASFDPFFTALH 565 Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWI-PDTNLTEYENVPYLESIQDYFVREVS 608 + A R + + G+ D ++++ +EV Sbjct: 566 DSLKQIDKAVRRHEKTLAEASKQAGKRQSADRATR-----QLKATLEE-LHKEVK 614 >gi|84386436|ref|ZP_00989464.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus 12B01] gi|84378860|gb|EAP95715.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus 12B01] Length = 521 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 116/491 (23%), Positives = 194/491 (39%), Gaps = 66/491 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS--AVREK 58 MT + L N IWK A ++ G DF + +L R + Sbjct: 1 MT-SSQQRKDLHNQIWKIANEVRGSVDGWDFKQYVLGALFYRFISENFTNYIEGGDSSIN 59 Query: 59 YLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FS------ 108 Y F +E A F SE + + + +NL + +A FS Sbjct: 60 YAGFDDEAPQIELIKDDAIKTKGYFIYPSELFCNVVKKASKNDNLNTDLAKVFSAIESSA 119 Query: 109 ------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-S 156 ++ K +F DF +T RL EK L+ + K ++L + Sbjct: 120 NGYASEEDIKGLFA--DFDTTSNRLGNTVIEKNTRLFAVLKGVEDLKLGDFQDNQIDLFG 177 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE LI ++ + + +F TP+ V +L L + D + K +YDP G+ Sbjct: 178 DAYEFLISKYAANAGKSGGEFFTPQTVSNLIAKLAMHKQDKVNK--------IYDPAAGS 229 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A H + GQE+ T+ + M + + D +I Sbjct: 230 GSLLLQAKKHFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DI 278 Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 G+TL+ F ++ F +SNPP+ KW D RF P L S Sbjct: 279 ALGNTLTNPHFGDEKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGILAPKSK 333 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 F++H N L GRAAIV + A E +IR++L++N+ +E +++L Sbjct: 334 ADFAFVLHALNYLSPK----GRAAIVCFPGIFYRSGA---EKKIRKYLVDNNYVETVISL 386 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 +LF+ T+IA + +LS K E VQ I+A+ N+ ++ + +I+ Sbjct: 387 APNLFYGTSIAVNILVLSKSKKENT---VQFIDASG--EGFFNKVGNNNVLTSEHIDKIM 441 Query: 454 DIYVSRENGKF 464 + + S++N + Sbjct: 442 ETFDSKQNIEH 452 >gi|304438089|ref|ZP_07398032.1| type I restriction-modification system DNA-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368862|gb|EFM22544.1| type I restriction-modification system DNA-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 525 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 105/495 (21%), Positives = 182/495 (36%), Gaps = 71/495 (14%) Query: 1 MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57 M A L IW+ A DL G DF + +L R + L Sbjct: 1 MDNKKEVERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREA 60 Query: 58 KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGSTNTRNNLESYIASF---- 107 F + + + + F SE + L T +L + Sbjct: 61 GDTDFDYAALPDDEAMAEKDNIVQILGFFIPPSELFQNVLARAETNESLNETLEQVFRHI 120 Query: 108 ---------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPD 152 D+ +F++FD +S ++L E+ L K+ + L H Sbjct: 121 ESSATGTPSQDDLTGLFDEFDVNS--SKLGATVKERNAKLTKLLSGVGAMRLGHYQNNTI 178 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+R + S + ++ TP++V L T L + + K +YDP Sbjct: 179 DAFGDAYEYLMRMYASNAGKSGGEYYTPQEVSELLTRLTVIGKTQVNK--------VYDP 230 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + + +GQ+ + +C M + + D Sbjct: 231 ACGSGSLLLKFAKVI------GRENVRNGFYGQDENITAYNLCRINMFLHDINFD----- 279 Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +I G TL + F +SNPP+ KKW + + R+ P L Sbjct: 280 DFDIAHGDTLINPHHWDDEPFEAIVSNPPYSKKWAGKDNPL-----LINDPRYAPAGVLA 334 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 +S F+MH L G AAIV ++ A E +IR++L++++ ++A Sbjct: 335 PVSKSDFAFIMHALAWL----ANNGTAAIVCFPGIMYRSGA---ERKIRQYLVDSNYVDA 387 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP +LFF T IAT + +L K + I+A+ + N ++ + Sbjct: 388 VIQLPDNLFFGTTIATCIMVLKKSKPDTTT---VFIDASKECVKVTNS----NKLSQENI 440 Query: 450 RQILDIYVSRENGKF 464 IL +Y R + + Sbjct: 441 ENILKLYTDRVDVEH 455 >gi|325953724|ref|YP_004237384.1| type I restriction-modification system, M subunit [Weeksella virosa DSM 16922] gi|323436342|gb|ADX66806.1| type I restriction-modification system, M subunit [Weeksella virosa DSM 16922] Length = 515 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 112/484 (23%), Positives = 190/484 (39%), Gaps = 66/484 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63 L IW+ A ++ G DF + +L R + E Y A Sbjct: 5 AQRQELQAKIWRIANEVRGSVDGRDFKQFVLGTLFYRFISENFTNYIEGGDESINYAALQ 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 I E VK GY Y S+ ++ + +T NL + + + Sbjct: 65 DDVITPEIKEDAVKTKGYFIY-PSQLFINIAKNAHTNPNLNTDLKAIFDAIESSANGYPS 123 Query: 108 SDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DFD +T+ K L K+ K ++ + + + YE Sbjct: 124 EPDIKGLFADFDTTSTRLGNTVE--AKNNTLAKVLKGIEILDFGNFEDNQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + ++ TP+ V L L + ++ K +YDP CG+G L Sbjct: 182 LIGNYAANAGKSGGEYFTPQTVSKLIAQLAMHKQTSVNK--------IYDPACGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A H + +GQE+ T+ + M + + D NI G+T Sbjct: 234 QAKKHFDNHIIDEG------FYGQEVNHTTYNLARMNMFLHNINYDKF-----NITLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L + F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LLQPEFGDEKPFDAIVSNPPYALKWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H + L GRAAIV + G A E +IR++L++N+ +E ++AL +LF Sbjct: 338 ILHALHYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVIALAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+IA + +LS KT+ K Q I+A+ + ++ D +I+ + + Sbjct: 391 YGTSIAVNILVLSKHKTD---TKTQFIDASGE-EFYKKVTN-NNVLEDQHIERIMQHFDT 445 Query: 459 RENG 462 +E+ Sbjct: 446 KEDT 449 >gi|88194192|ref|YP_498984.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87201750|gb|ABD29560.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 490 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 113/532 (21%), Positives = 198/532 (37%), Gaps = 69/532 (12%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNIDLESFVKVAGYSF 80 ++F IL R L E + A+ + ++ Sbjct: 1 MDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQVG 60 Query: 81 YNTSE---------------YSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST- 123 Y + + L +T R S + S+N +F D D SST Sbjct: 61 YFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSSTR 119 Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP+ Sbjct: 120 LGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQ 179 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + ++ D D +R +YDPTCG+G L K + Sbjct: 180 QVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYR 221 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 GQE T+ + ML+ + R + +I+ TL F G F ++NPP+ Sbjct: 222 YFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPY 276 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 KW D E +G L S F+ H+ + L+ G A+VL Sbjct: 277 SAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLP 327 Query: 362 SSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ Sbjct: 328 HGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDD 382 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK 479 V I+A++ + GK + ++D Q +I+D Y +E K+S + Sbjct: 383 NVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYN 438 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + P R ++ L+ K + + ++++ Sbjct: 439 LNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 489 >gi|188528306|ref|YP_001910993.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori Shi470] gi|188144546|gb|ACD48963.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori Shi470] Length = 820 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 117/559 (20%), Positives = 218/559 (38%), Gaps = 75/559 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + +S ++V FY E L+ G + L IA ++ + K + + DF+ Sbjct: 48 DAKNNTDSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 105 DN-TKLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L + +++YDPTCG+G L A + Sbjct: 164 FYTPSEVSL------LLSLLLGIDANTKQDKSIYDPTCGSGSLLLKASSLA--------G 209 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ +I +G STLS F + Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D ++ + K N RF G P +G FL+H+ L+ Sbjct: 263 TFDYVVANPPFSLKNWTDGLNIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ + L +LF+ T+I + Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGAIGLAPNLFYGTSIPACV 375 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L R+G V LI+A+ + + +G K R + + ++++D + + + + Sbjct: 376 IVLDKENARARKG-VFLIDASKDF---KKDGNKNR-LREQDVQKMIDAFNALKEIPYYSK 430 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + + L+ + + + ++ + K ++ Sbjct: 431 M---------VSLEEISTNDYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIEAYA 481 Query: 528 PYGWAESFVKESIKSNEAK 546 PY +K ++ K Sbjct: 482 PYFQVFKELKNTLFKKSDK 500 >gi|322689708|ref|YP_004209442.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F] gi|320461044|dbj|BAJ71664.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F] Length = 855 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 108/500 (21%), Positives = 186/500 (37%), Gaps = 76/500 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64 + LA IW++A + + ++ IL F + L E + +R + Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEVARLRAEDWGDEDLK 58 Query: 65 --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112 D E+ V Y S + S T ++ +++F N Sbjct: 59 GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118 Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 IF+ + +++L ++ + I + IYE+LI Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F S + A +F TP +V L + ++ + + +YDPT G+G L Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 VA + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281 Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + +SNPP+ + WE + GE RF G+ S Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L G IVL LF G E IRR L+EN I+AI+ L Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P ++FF T I T + +L + + V +++A+ + K + ++I+ Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439 Query: 454 DIY-VSRENGKFSRMLDYRT 472 D +R+ KFSR++ Sbjct: 440 DTVSENRDVDKFSRLVSLDE 459 >gi|190606537|ref|YP_001974822.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus faecium] gi|190350307|emb|CAP62659.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus faecium] Length = 515 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 116/492 (23%), Positives = 194/492 (39%), Gaps = 69/492 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54 M+ T L + IWK A D+ G DF + +L R + Sbjct: 1 MSSATQ-RTKLQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDDSVN 59 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD---- 109 E + I ++ K GY Y S+ + NT +L + +A+ FS Sbjct: 60 YAELNDDVITNEIKEDAI-KTKGYFIY-PSQMFSRIAKTANTNESLNTDLAAIFSAIESS 117 Query: 110 --------NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVM 155 + K +F DF +T RL +K L + K G++ + + Sbjct: 118 ANGYPSELDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQIDLF 175 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP+ V L L + + K +YDP G Sbjct: 176 GDAYEFLISNYAANAGKSGGEFFTPQSVSSLIAQLAIHKQTTINK--------IYDPAAG 227 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A +GQE+ T+ + M + + D + Sbjct: 228 SGSLLLQAKKQFDAHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDKF-----H 276 Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G+TL + K F +SNPP+ KW +D RF P L S Sbjct: 277 IALGNTLLDPHYGEDKPFDAIVSNPPYSVKWIGSEDPT-----LINDERFAPAGVLAPKS 331 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L GRAAIV + G A E +IR++L++N+ +E I++ Sbjct: 332 KADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIIS 384 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LF+ T+IA + +LS K++ K Q I+A+ + + E I+ D+ +I Sbjct: 385 LAPNLFYGTSIAVNILVLSKHKSD---NKTQFIDASGI-EFYKKETN-NNILTDEHIAKI 439 Query: 453 LDIYVSRENGKF 464 + ++ S+E+ Sbjct: 440 MSMFDSKEDIDH 451 >gi|331006357|ref|ZP_08329668.1| Type I restriction-modification system, DNA-methyltransferase subunit M [gamma proteobacterium IMCC1989] gi|330419839|gb|EGG94194.1| Type I restriction-modification system, DNA-methyltransferase subunit M [gamma proteobacterium IMCC1989] Length = 517 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 121/496 (24%), Positives = 195/496 (39%), Gaps = 74/496 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 MT T A+L IW A D+ G DF + +L R + A + Sbjct: 1 MT-STQQRAALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSIH 59 Query: 59 YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107 Y A I + +K GY Y S+ + + N +L + +A+ Sbjct: 60 YAALSDEVITPDIKDDAIKTKGYFIY-PSQLFATVAKNANNNESLNTDLAAIFAAIEASA 118 Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVP 151 + K +F DF +T RL +K L + K +G++ PD Sbjct: 119 SGYPSEPDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGHDFYEKPDAAQ 176 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + YE LI + + + +F TP+ V L L + ++ K +YD Sbjct: 177 IDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYD 228 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P G+G L A H + GQE+ T+ + M + + D Sbjct: 229 PAAGSGSLLLQAKKHFDNHIIEDG------FWGQEINHTTYNLARMNMFLHNINYDKF-- 280 Query: 272 LSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 N+Q G+TL+ F + F +SNPP+ KW D RF P L Sbjct: 281 ---NMQLGNTLTDPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVL 332 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S F++H + L GRAAIV + G A E +IR++L++N+ +E Sbjct: 333 APKSKADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVE 385 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 +++L +LFF T IA + +LS KT+ Q I+A+ L+ N + D Sbjct: 386 TVISLAPNLFFGTTIAVTILVLSKHKTDTTT---QFIDASGLFKKDTNT----NTMTGDH 438 Query: 449 RRQILDIYVSRENGKF 464 QI+ ++ S+ N + Sbjct: 439 IEQIMQVFDSKANVEH 454 >gi|227546693|ref|ZP_03976742.1| type I restriction-modification system methyltransferase subunit [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212839|gb|EEI80718.1| type I restriction-modification system methyltransferase subunit [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 855 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 108/500 (21%), Positives = 186/500 (37%), Gaps = 76/500 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64 + LA IW++A + + ++ IL F + L E + +R + Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEVARLRAEDWGDEDLK 58 Query: 65 --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112 D E+ V Y S + S T ++ +++F N Sbjct: 59 GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118 Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 IF+ + +++L ++ + I + IYE+LI Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F S + A +F TP +V L + ++ + + +YDPT G+G L Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 VA + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281 Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + +SNPP+ + WE + GE RF G+ S Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L G IVL LF G E IRR L+EN I+AI+ L Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P ++FF T I T + +L + + V +++A+ + K + ++I+ Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439 Query: 454 DIY-VSRENGKFSRMLDYRT 472 D +R+ KFSR++ Sbjct: 440 DTVSENRDVDKFSRLVSLDE 459 >gi|150391750|ref|YP_001321799.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF] gi|149951612|gb|ABR50140.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 90/484 (18%), Positives = 181/484 (37%), Gaps = 63/484 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W+ L G + + + +L + + + R Sbjct: 1 MAVKKSELYSLLWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGQR-----FAEFTV 55 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 E + G S + ++ I F + + D F+ Sbjct: 56 NEGASFEDLIAAKGKS---------------DVGERVDKIIQKFLEENRLQGSLPDVSFN 100 Query: 122 STIARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174 + L L + F + + D ++ + YE+ + +F E + Sbjct: 101 NP-DELGSGKELVDKVSGLIAIFQNPAIDFKSNRASGDDIIGDAYEYFMMKFAQESGKSK 159 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V + L+ D K+ G TL+DP G+G L A + + + Sbjct: 160 GQFYTPSEVSRIIARLIGIGD---IKQETGKKWTLHDPAAGSGSLLIRAAD---EAPTDE 213 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290 I+ +GQE P+T + ++ + I+ +TL+ + Sbjct: 214 DGNSIVSIYGQEKYPDTAGLAKMNFILHN-------KGTGEIKSANTLANPAYKDDFGGL 266 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F + + NPPF K D ++ G G+P +G + + L+ Sbjct: 267 RKFDFIVMNPPFSDKDWTDGIKPSEDKFKRFDG---YGIPPEKNGDYAW---FLHVLKAL 320 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 + G+A I+L L A E IR+ +L+ I+ IV LP +LF+ T I + I Sbjct: 321 DSQRGKAGIILPHGVLSRPNA---EETIRKAVLDKRYIKGIVGLPANLFYGTGIPACIII 377 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468 + ++R G + +INA+ + + +G K R + + +I+ ++++E + +S+ + Sbjct: 378 IDKEDADKREG-IFMINASRGF---KKDGNKNR-LREQDIEKIVQTFINKEEIEGYSKFV 432 Query: 469 DYRT 472 Y+ Sbjct: 433 TYKE 436 >gi|302190880|ref|ZP_07267134.1| type I restriction-modification system DNA methylase [Lactobacillus iners AB-1] Length = 432 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 86/464 (18%), Positives = 177/464 (38%), Gaps = 55/464 (11%) Query: 77 GYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 F+ E T+ +N I + + K + S + + Sbjct: 2 ENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKDVLPKNYASPDLDK--- 58 Query: 130 AGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +L + F+ I++ + + ++ YE+ I +F + + +F TP +V Sbjct: 59 -QVLGDVVDIFTNRIDMSDNKQSEDLLGRTYEYCIAKFAEKEGKSGGEFYTPSSIVKTLV 117 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++L P +YD CG+GG + + + + +GQE Sbjct: 118 SIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSGNRG---SISIYGQEAN 164 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 +T + M IR +++D + T + DL + + L+NPPF Sbjct: 165 ADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKADFILANPPFNYSPWNQ 218 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + K + R+ G P + + ++ H+ + L G+ +VL++ L + Sbjct: 219 E-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP----NGKIGLVLANGALSSQ 267 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 GE EIR+ ++E+DLIE I++LP LF+ +I LW +S K +++GK I+A Sbjct: 268 NC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISKNK--KQKGKTVFIDAR 323 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMS 487 + + K R ++ +++ D + + +NG G+ + + + Sbjct: 324 KMGHMVDR---KHRDFTEEDIQKLADTFEAFQNG-----TLEDEKGFCSVATIQDIAKQD 375 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 ++L +E + + L M ++ + Sbjct: 376 YVLTPGRYVGIEEQEDDGEPFDEKMTKLTSELSDMFERSHELED 419 >gi|45656820|ref|YP_000906.1| type I restriction enzyme [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600056|gb|AAS69543.1| type I restriction enzyme [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 513 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 110/490 (22%), Positives = 184/490 (37%), Gaps = 67/490 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54 MT A+L IW+ A D+ G DF + +L R + Sbjct: 1 MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ 59 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFY-------NTSEYSLSTLGSTNTR---NNLESYI 104 + I ++ K GY Y ++ + +T+ ++ES Sbjct: 60 YSKLNDKKITKEIKDDAI-KTRGYFIYPSQLFANIVTKADKNERLNTDLAGIFKDIESSA 118 Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 F + I F DF +T RL +K L + K + ++ + + Sbjct: 119 NGF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V L L + I +YDP CG+G Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAI--------HKQTRINKIYDPACGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A D GQE+ T+ + M + + D +I+ Sbjct: 230 SLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIE 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL ++ F +SNPP+ W+ D RF P L S Sbjct: 279 LGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + A E +IR++L+ N+ +E +++L Sbjct: 334 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRSGA---EQKIRQYLVGNNFVETVISLA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LFF T IA + +LS KT+ Q I+A+ L+ N I+ +D +I+ Sbjct: 387 PNLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETN----NNILTEDHIERIMQ 439 Query: 455 IYVSRENGKF 464 + S+ + + Sbjct: 440 TFDSKVDTEH 449 >gi|296171676|ref|ZP_06852890.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894037|gb|EFG73800.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 457 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 86/456 (18%), Positives = 151/456 (33%), Gaps = 85/456 (18%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +WK A L G + V+L L Sbjct: 1 MRATDKELEDTLWKAANKLRGSLSAGQYKDVVLGLVFL---------------------- 38 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + AG E +L + + E Sbjct: 39 ----------EHAG-------EAEWKSLVGNADSPGIGRLVD-------DAMEVAALPRL 74 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 L + ++ L +M +YE+ + F +F TP V Sbjct: 75 YENL-DPRRVGELVCLLDAARLGERGGARDLMGELYEYFLGNFARAEGRRGGEFFTPPSV 133 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V + +L +YDP CG+GG VA+ + Sbjct: 134 VRVIVEVL-----------EPASGRVYDPCCGSGGMFVQTERFVAEHDGD---SAKISFW 179 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 GQE +T + + + ++ + G TL D G + Y L+NPPF Sbjct: 180 GQESVEQTWRLAKMNLAVHGIDDTGLGA-----RWGDTLLADQHAGIQMDYVLANPPFN- 233 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 +++ ++ R+ G+P + + ++ H+ +KL GG+A +V+++ Sbjct: 234 --------IKEWARDERDPRWRFGVPPAGNANYAWIQHILSKLAP----GGKAGVVMANG 281 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 + + GE IR +++ DL+ +VALP LF T I LW K G+V Sbjct: 282 SMSSNALREGE--IRARIVDADLVSCMVALPAQLFRSTPIPVCLWFFDTDKGTR-SGQVL 338 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 I+A L + R + ++ +I D Y + Sbjct: 339 FIDARGLGHLVDRAE---RALTPEEIVRIGDTYHAW 371 >gi|261840207|gb|ACX99972.1| type I R-M system M protein [Helicobacter pylori 52] Length = 817 Score = 270 bits (690), Expect = 7e-70, Method: Composition-based stats. Identities = 126/582 (21%), Positives = 228/582 (39%), Gaps = 82/582 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L N +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYNSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------- 43 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 + + +S ++V FY E L+ G + L IA ++ K + + DF+ Sbjct: 44 KARNNTDSEIEVPKGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290 L +GQE + T A+C M++ +I +G STLS LFT + Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPLFTTENGML 258 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSL 318 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + +L R+G V +I+A+ + + +G K R + + ++++D + + + + Sbjct: 372 VIVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYS 426 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGL--ARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + L+ A+ E++ L H++ +L + Sbjct: 427 KM---------VSLEEISANDYNLNIARYIAAKPESEKDLFALINSHKASYLPKNEIKAY 477 Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 Y + E KS++ +K I I Sbjct: 478 APYFRVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSE 519 >gi|238926418|ref|ZP_04658178.1| type I site-specific deoxyribonuclease methyltransferase subunit [Selenomonas flueggei ATCC 43531] gi|238885822|gb|EEQ49460.1| type I site-specific deoxyribonuclease methyltransferase subunit [Selenomonas flueggei ATCC 43531] Length = 525 Score = 270 bits (690), Expect = 7e-70, Method: Composition-based stats. Identities = 105/495 (21%), Positives = 182/495 (36%), Gaps = 71/495 (14%) Query: 1 MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57 M A L IW+ A DL G DF + +L R + L Sbjct: 1 MDNKKEVERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREA 60 Query: 58 KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGSTNTRNNLESYIASF---- 107 AF + + + + F SE + L T +L + Sbjct: 61 GDTAFDYAALPDDEAMAEKDNIVQILGFFIPPSELFQNVLARAETNESLNETLEQVFRHI 120 Query: 108 ---------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPD 152 D+ +F++FD +S ++L E+ L K+ + L H Sbjct: 121 ESSATGTPSQDDLTGLFDEFDVNS--SKLGATVKERNAKLTKLLSGVGAMRLGHYQDNTI 178 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+R + S + ++ TP++V L T L + + K +YDP Sbjct: 179 DAFGDAYEYLMRMYASNAGKSGGEYYTPQEVSELLTRLTVIGKTQVNK--------VYDP 230 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + + +GQ+ + +C M + + D Sbjct: 231 ACGSGSLLLKFAKVI------GRENVRNGFYGQDENITAYNLCRINMFLHDINFD----- 279 Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +I G TL + F +SNPP+ KKW + + R+ P L Sbjct: 280 DFDIAHGDTLINPHHWDDEPFEAIVSNPPYSKKWAGKDNPL-----LINDPRYAPAGVLA 334 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S F++H L G AAIV ++ A E +IR++L++++ ++A Sbjct: 335 PTSKSDFAFILHSLAWL----AASGTAAIVCFPGIMYRSGA---EKKIRQYLVDSNYVDA 387 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 ++ LP +LFF T IAT + +L K + I+A+ + N ++ + Sbjct: 388 VIQLPDNLFFGTTIATCIMVLKKSKPDTTT---VFIDASKECVKVTNS----NKLSQENI 440 Query: 450 RQILDIYVSRENGKF 464 IL +Y R + + Sbjct: 441 ENILKLYTDRVDVEH 455 >gi|260061349|ref|YP_003194429.1| type I restriction-modification system DNA methylase [Robiginitalea biformata HTCC2501] gi|88785481|gb|EAR16650.1| type I restriction-modification system DNA methylase [Robiginitalea biformata HTCC2501] Length = 531 Score = 270 bits (690), Expect = 7e-70, Method: Composition-based stats. Identities = 96/570 (16%), Positives = 204/570 (35%), Gaps = 77/570 (13%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + A + +W A +L G + +LP L+ + E R + + + Sbjct: 1 MTQTKADINFEKELWNAANELRGAVAENQYKDYVLPLIFLKHMSERYEMRRDELMDAFED 60 Query: 62 -----FGGSNID-----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-----------L 100 +G S D + ++ ++ + + L R+N L Sbjct: 61 EASNYYGLSEDDRNYVLEDPDEYLSKNTYIIPKKATWEFLQDNAERDNIKVLVDEAFDTL 120 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIY 159 + + +F K I S + + + + S +L ++ +Y Sbjct: 121 DETLGAFRPELKGILPRIFVKSQLT----SRQVGGLINLLSHPKLSVKENPESDILGRVY 176 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+ I +F GA F TP +V L ++ ++D CG+GG Sbjct: 177 EYYIGKFAIAEGSGAGQFFTPGSIVRLMVEMI-----------EPYKGKIFDAACGSGGM 225 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 ++ + G + +GQE T +C + +R L D ++ G Sbjct: 226 FVQSLKFLEAHGGD---KRNISIYGQERYSGTLRLCKMNLALRDLSFD--------VRLG 274 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLF 338 +L +D F Y L NPPF +D +K+ + G F + + ++ Sbjct: 275 DSLLQDKFPDLEADYILVNPPFNVSQWHPEDLPDKDPRLFGPKEEF----TTDGNANYMW 330 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + + L + G AA+V+++ + G GE +R+ +++ +I+AIV LP LF Sbjct: 331 MQTFWSHL----SNTGTAAVVMANGAMTTGNK--GEKNVRQHMVDEGMIDAIVRLPDKLF 384 Query: 399 FRTNIATYLWILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 T I ++ILS + ER+ ++ I+ + + + R+ ++ + Sbjct: 385 LTTGIPACIFILSKNRDGKDGVHRERKEEILFIDMSKMGRMESR---RLRVFDEADLIKA 441 Query: 453 LDIYVSREN--GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD----ITWRK 506 ++ Y + N K + + + + + + L +E + I + + Sbjct: 442 VEAYHAWRNLPNKDNAPYENQDGFCYAATLEEVQKQDYKLTPGIYVGIEEEEDDGIPFEE 501 Query: 507 LSPLHQSFWLDILKPMMQ-QIYPYGWAESF 535 + ++ + + + + F Sbjct: 502 KLAILKAQLKEQFREGEDLKRKILDNFDQF 531 >gi|261837922|gb|ACX97688.1| type I restriction enzyme modification protein [Helicobacter pylori 51] Length = 525 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 124/574 (21%), Positives = 206/574 (35%), Gaps = 86/574 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT- 51 M A L N I K A +L G DF + +L R + + Sbjct: 1 MENKNTQAPKSSSLERNELHNTILKMANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60 Query: 52 -RSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 + E+ I + F F N + + T Sbjct: 61 NKEERERDPNFDYALLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNVQNNEDLNVTLQ 120 Query: 99 NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149 N+ + I S +N K +F D D +S + + L KI + G++L Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLTKILEAIGGMQLGDYQ 180 Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V + YE+L+ + S + +F TP++V L + L +++ K Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L + D GQE+ T+ +C M + + Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL + F +SNPP+ KW DK+ + RF P Sbjct: 284 --YSKFHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDKNPI-----LINDERFSPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L + + F MH+ + L G AAIV L+ G A E++IR +L++ + Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ ++ALP +LFF T+IAT + +L K + I+A+ + K+ + Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDNTT---LFIDASKEFVKE----GKKNKLK 442 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 R +IL Y R+ K L + + + L E Sbjct: 443 ARNREKILKTYTERKAIKHFCALAS---------MEKIKENDYNLSVNRYVEQEDTKEII 493 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 + L+ +I + + +Q ES +KE Sbjct: 494 DIKALN----SEISQIVEKQSALRNSLESIIKEL 523 >gi|288926748|ref|ZP_06420659.1| type I restriction-modification system, M subunit [Prevotella buccae D17] gi|288336478|gb|EFC74853.1| type I restriction-modification system, M subunit [Prevotella buccae D17] Length = 515 Score = 269 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 108/479 (22%), Positives = 187/479 (39%), Gaps = 62/479 (12%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69 L IWK A ++ G DF + +L R + A E + + Sbjct: 10 LQTAIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTNFIEAGDESVNYAQSPDEVIT 69 Query: 70 ----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA----------KAIF 115 + +K GY Y S+ ++ N NL + +A+ D I Sbjct: 70 PEIKDDAIKTKGYFIY-PSQLFVNIAKDANGNPNLNTDLAAIFDAIESSASGYASEHDIK 128 Query: 116 EDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGS 168 F DF +T RL EK L + K ++ + + + YE LI + + Sbjct: 129 GLFADFDTTSNRLGNTVEEKNKRLAAVIKGVESLDFSNFENNEIDLFGDAYEFLISNYAA 188 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +F TP++V L L + D++ K +YDP CG+G L A Sbjct: 189 NAGKSGGEFFTPQNVSSLIARLAMYGQDSVNK--------IYDPACGSGSLLLQAKKQFD 240 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 GQE+ T+ + M + + +I G+TL + Sbjct: 241 AHLIEEG------FFGQEINHTTYNLARMNMFLHNIN-----YAKFDIALGNTLLNPQYG 289 Query: 289 GKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANK 345 ++ F +SNPP+ W D RF P L S F++H + Sbjct: 290 DQKPFDAIVSNPPYSVNWVGSDDPT-----LINDDRFAPAGVLAPKSKADFAFVLHALSY 344 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L + GRAAIV + G A E +IR++L++N+ +E +++LP +LF+ T+IA Sbjct: 345 L----SARGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFYGTSIAV 397 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + +LS KT+ + Q I+A + ++ +I++I+ ++E ++ Sbjct: 398 NILVLSKHKTDTQT---QFIDAGS--EDFFKKETNNNVLLPKHIDRIVEIFGTKEEVQY 451 >gi|23335512|ref|ZP_00120747.1| COG0286: Type I restriction-modification system methyltransferase subunit [Bifidobacterium longum DJO10A] gi|189440821|ref|YP_001955902.1| type I restriction-modification system methyltransferase subunit [Bifidobacterium longum DJO10A] gi|189429256|gb|ACD99404.1| Type I restriction-modification system methyltransferase subunit [Bifidobacterium longum DJO10A] Length = 855 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 109/521 (20%), Positives = 189/521 (36%), Gaps = 76/521 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64 + LA IW++A + + ++ IL F + L E + +R + Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEIARLRAEDWGDEDLK 58 Query: 65 --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112 D E+ V Y S + S T ++ +++F N Sbjct: 59 GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118 Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 IF+ + +++L ++ + I + IYE+LI Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F S + A +F TP +V L + ++ + + +YDPT G+G L Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 VA + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281 Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + +SNPP+ + WE + GE RF G+ S Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L G IVL LF G E IRR L+EN I+AI+ L Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P ++FF T I T + +L + + V +++A+ + K + ++I+ Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439 Query: 454 DIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 D +R+ KFSR++ + P + Sbjct: 440 DTVSENRDIDKFSRLVSLDEIRQNDYNLNIPRYVDSSETAE 480 >gi|23466326|ref|NP_696929.1| hypothetical protein BL1782 [Bifidobacterium longum NCC2705] gi|23327081|gb|AAN25565.1| HsdM [Bifidobacterium longum NCC2705] Length = 855 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 108/497 (21%), Positives = 183/497 (36%), Gaps = 70/497 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-S 65 + LA IW++A + + ++ IL F + L A G Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVAHLRAEDWGDEDLKGLD 61 Query: 66 NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK--------A 113 D E+ V Y S + S T ++ +++F N Sbjct: 62 ENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFAG 121 Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IF+ + +++L ++ + I + IYE+LI F S Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + + +YDPT G+G L VA Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 233 RRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSDWPW 284 Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + +SNPP+ + WE + GE RF G+ S Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSKADY 336 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H L G IVL LF G E IRR L+EN I+AI+ LP + Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T I T + +L + + V +++A+ + K + ++I+D Sbjct: 390 IFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIVDTV 442 Query: 457 -VSRENGKFSRMLDYRT 472 +R+ KFSR++ Sbjct: 443 SENRDVDKFSRLVSLDE 459 >gi|317481749|ref|ZP_07940780.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|316916806|gb|EFV38197.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA] Length = 855 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 108/500 (21%), Positives = 186/500 (37%), Gaps = 76/500 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64 + LA IW++A + + ++ IL F + L E + +R + Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEIARLRAEDWGDEDLK 58 Query: 65 --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112 D E+ V Y S + S T ++ +++F N Sbjct: 59 GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118 Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 IF+ + +++L ++ + I + IYE+LI Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F S + A +F TP +V L + ++ + + +YDPT G+G L Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 VA + P + + QEL+ T+ + +++R + D + G TL D Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281 Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + +SNPP+ + WE + GE RF G+ S Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL+H L G IVL LF G E IRR L+EN I+AI+ L Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P ++FF T I T + +L + + V +++A+ + K + ++I+ Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439 Query: 454 DIY-VSRENGKFSRMLDYRT 472 D +R+ KFSR++ Sbjct: 440 DAVSENRDVDKFSRLVSIDE 459 >gi|294660605|ref|NP_853464.2| type I restriction-modification system methyltransferase subunit [Mycoplasma gallisepticum str. R(low)] gi|284812268|gb|AAP57032.2| type I restriction-modification system methyltransferase (M) subunit [Mycoplasma gallisepticum str. R(low)] gi|284930962|gb|ADC30901.1| type I restriction-modification system methyltransferase (M) subunit [Mycoplasma gallisepticum str. R(high)] Length = 875 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 109/492 (22%), Positives = 188/492 (38%), Gaps = 76/492 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSAV 55 + LA IW A ++ G+ + D+ IL F + L + + Sbjct: 2 TKQELAREIWAMANEMRGNIEANDYKDYILGFLFYKYLSDKQDEYFASKNVVKDEDKKQY 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNL------------ES 102 I +Y E ST + + N ++L S Sbjct: 62 LVALAEADKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFERS 121 Query: 103 YIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + + ++ K IF+ D + I +L E++ ++ IC + I + ++ Sbjct: 122 ILEKYEESFKDIFK--DLQAGIQKLGNTAYERSEAIWNICNLINKIPIT-SKQDYDILGF 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+LI F + + A +F TP +V L + + + L ++YDPT G Sbjct: 179 VYEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGL------KNVSIYDPTSG-- 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + + + QE+ T+ + +L+ + S + Sbjct: 231 SLLITLGRELK----KIDKNVKIQYYAQEVIDTTYNITRMNLLMNDVHSVNMFA-----K 281 Query: 278 QGSTLSKD--------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 G TL +D + KR +SNPP+ W + RF GL Sbjct: 282 CGDTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKEN--------DPRFRYGLA 333 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S + FL+H LE G IVL LF G E +IR+ L+ +D I+A Sbjct: 334 PKSKSELAFLLHSLYHLEDH----GILTIVLPHGVLFRGG---SELQIRQNLISHDHIDA 386 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP+++FF T I T + +L KT++ + V I+A+ +T EG K + Sbjct: 387 IIGLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFT---KEGNK-NKLQSSDI 442 Query: 450 RQILDIYVSREN 461 +I D + +RE+ Sbjct: 443 VRIYDAFSARED 454 >gi|254780040|ref|YP_003058147.1| Type I restriction-modification enzyme subunit M [Helicobacter pylori B38] gi|254001953|emb|CAX30210.1| Type I restriction-modification enzyme subunit M [Helicobacter pylori B38] Length = 816 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 114/508 (22%), Positives = 203/508 (39%), Gaps = 71/508 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G + L IA ++ + K + + DF+ Sbjct: 45 ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+ F SE + Sbjct: 101 DN-TKLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMCHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ + +I +G STLS F K Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPFFIKNGMLK 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F Y ++NPPF K D +++ + K N RF G P +G FL+H+ L+ Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 318 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ A++L LF G A E IR+ LL I+ ++ L +LF+ T+I + Sbjct: 319 NT----GKGAVILPHGVLFRGNA---EGAIRKNLLMKGYIKGVIGLAPNLFYGTSIPACV 371 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 IL R+G V +I+A+ + + +G K R + + ++++D + + + +S+ Sbjct: 372 IILDKENAHARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 426 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTG 494 M+ + P ++ + Sbjct: 427 MVSLEEISTNDYNLNIPCYIAAKQESEK 454 >gi|323189849|gb|EFZ75127.1| type I restriction-modification system, M subunit [Escherichia coli RN587/1] Length = 518 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 117/483 (24%), Positives = 191/483 (39%), Gaps = 68/483 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 5 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I + +K GY Y S+ + NT + L + + S Sbjct: 65 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 + K +F DF +T RL +K L + K G++L + + + YE Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP+ V L L + + K +YDP G+G L Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D +I+ G+T Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L++ F ++ F +SNPP+ KW D RF P L S F Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H N L + GRAAIV + G A E +IR++L++N+ +E +++L +LF Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T IA + +L+ K + Q I+A+ L+ N ++ D QI+ ++ S Sbjct: 391 FGTTIAVNILVLAKNKKDTTT---QFIDASGLFKKETN----NNVLLDAHIEQIMAVFDS 443 Query: 459 REN 461 +EN Sbjct: 444 KEN 446 >gi|325680236|ref|ZP_08159798.1| type I restriction-modification system, M subunit [Ruminococcus albus 8] gi|324108053|gb|EGC02307.1| type I restriction-modification system, M subunit [Ruminococcus albus 8] Length = 875 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 102/521 (19%), Positives = 186/521 (35%), Gaps = 93/521 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------------LEPTR 52 + LAN IW++A + + ++ IL F + + L R Sbjct: 2 NKQQLANKIWESANKMRSKIEANEYKDYILGFIFYKYISDVEITHLLGLGYTTDTLYEVR 61 Query: 53 SAV----------REKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLE 101 V + +++ GY Y + LGS +N+ Sbjct: 62 EPVYPDPDNASAPFDDEETVKDLEEQIDNIKTDIGYFIPYTDLFSTWLELGSDFDVSNVR 121 Query: 102 SYIASFS---------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147 + +F+ K IF+ + +++L E+ + + I Sbjct: 122 DALNAFNNRRIGKTHEKVFKGIFDT--LRTGLSKLGGTAGEQTKAIRDLLNLIKDI-PTD 178 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + IYE+LI F + + A +F TP +V L + ++ Sbjct: 179 NKEDYDALGFIYEYLIENFAANAGKKAGEFYTPHEVSLLMSEIVAYHLRDR------KEI 232 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDPT G+G L N + + + QEL+ T+ + +++R ++++ Sbjct: 233 KIYDPTSGSGSLLI---NIGKSAARYMGTGNNIAYYAQELKQNTYNLTRMNLVMRGIKAN 289 Query: 268 PRRDLSKNIQQGSTLSKDL---------------FTGKRFHYCLSNPPFGKKWEKDKDAV 312 + G TL D + +SNPP+ + W+ D Sbjct: 290 MIET-----RCGDTLEDDWPYFSEDDKGVKIEGTYDPLYVDAVVSNPPYSQNWDPDGKEN 344 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + + G G+ S FL+H ++ G I+L LF G Sbjct: 345 DDRYS-------GYGVAPKSKADYAFLLHDLYHIKSD----GIMTIILPHGVLFRGGE-- 391 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 E EIRR L+E + I+AI+ LP ++FF T I T + +L V +I+A+ + Sbjct: 392 -EGEIRRNLIERNRIDAIIGLPANIFFGTGIPTIIMVLKKN---RINDDVLIIDASKGFE 447 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 K + R+I D + R + K+SR ++ Sbjct: 448 K----AGKSNKLRASDIRRITDTVIDRRDVPKYSRKVNREE 484 >gi|116329325|ref|YP_799045.1| Type I restriction-modification system, methyltransferase subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116122069|gb|ABJ80112.1| Type I restriction-modification system, methyltransferase subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 513 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 182/489 (37%), Gaps = 65/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVRE 57 MT A+L IW+ A D+ G DF + +L R + + + Sbjct: 1 MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSID 59 Query: 58 KYL--------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTR---NNLESYIA 105 I + F N S+ + +T+ +E+ Sbjct: 60 YAKLPDKRITREIKDDAIKTRGYFIYPSQLFANVVSKADDNESLNTDLAAIFKAIETSAN 119 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + I F DF +T RL +K L + K + ++ + + Sbjct: 120 GF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDA 178 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP+ V L L + I +YDP CG+G Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAI--------HKQTRINKIYDPACGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A D GQE+ T+ + M + + D +I+ Sbjct: 231 LLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIEL 279 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL ++ F +SNPP+ W+ D RF P L S Sbjct: 280 GNTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLDPKSKAD 334 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 335 FAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAP 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T IA + +LS KT+ Q I+A+ L+ N I+ D QI+ Sbjct: 388 NLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETNT----NILTDKHIEQIMQT 440 Query: 456 YVSRENGKF 464 + S+ + + Sbjct: 441 FDSKIDKEH 449 >gi|120435035|ref|YP_860721.1| type I restriction-modification system methyltransferase subunit [Gramella forsetii KT0803] gi|117577185|emb|CAL65654.1| type I restriction-modification system methyltransferase subunit [Gramella forsetii KT0803] Length = 547 Score = 269 bits (687), Expect = 2e-69, Method: Composition-based stats. Identities = 100/506 (19%), Positives = 178/506 (35%), Gaps = 79/506 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59 M++ L +W A L G F +L F LR L E + + + + Y Sbjct: 1 MSKK--QQDKLGKTLWGIANKLRGAMNADAFRDYMLSFLFLRYLSHNYEESAKKELGKDY 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLST------------LGSTNTRNNLESYI--- 104 + + V +Y +E + + +N+ Sbjct: 59 PKSSSKDTRPDFVVPPPLEIWYEDNEEDIIEFEKQMQRKVHYVIKPKYLWSNITELARTH 118 Query: 105 -----------------ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE 144 SF +F + + +S + E+ L I + + Sbjct: 119 HPDLLKTIEKGFRHIEEESFESTFHGLFSEINLNSEKLGKSEKERNDKLCTIIQKIAE-G 177 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKES 202 + + + + YE+LI +F + + A +F TP++V + + ++ Sbjct: 178 IAEFSTDIDTLGDAYEYLIGKFAAGSGKKAGEFYTPQEVSSVLSQIVTLDAQKPDHTSGP 237 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + + D CG+G L + + D G +GQE T+ + ML+ Sbjct: 238 KDKLNNVLDFACGSGSLLLNVRRRIKDNGGRIGK-----IYGQENNITTYNLARMNMLLH 292 Query: 263 RLESDPRRDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 ++ D I G TL + F ++NPPF +WE + Sbjct: 293 GMK-----DTEFEIFHGDTLKNQWDILNEMNPSKKVEFDAIVANPPFSLRWEPTET---- 343 Query: 315 EHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 GE RF GL S FL+H + L + G AI+L LF A Sbjct: 344 ---LGEDFRFKSYGLAPKSAADFAFLLHGFHFL----SQNGTMAIILPHGVLFRSGA--- 393 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 E IR LL++ ++ ++ LP +LF+ T I + ++ K E V INA+ Sbjct: 394 EERIRTKLLKDGNVDTVIGLPANLFYSTGIPVCILVIKKCKRES---DVLFINASAEGNY 450 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSR 459 ++ K + + + I++ Y SR Sbjct: 451 KKS--KNQNELRKSDIKNIIETYKSR 474 >gi|229082883|ref|ZP_04215307.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock4-2] gi|228700421|gb|EEL52983.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock4-2] Length = 584 Score = 269 bits (687), Expect = 2e-69, Method: Composition-based stats. Identities = 111/604 (18%), Positives = 200/604 (33%), Gaps = 137/604 (22%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---------------- 44 M + L +W A+ L G DF +L F LR L Sbjct: 1 MNDTQQK--QLGATLWGIADKLRGSMNADDFRDYMLSFLFLRYLSDNYEEAAKKELGSDY 58 Query: 45 ----------------ECALEPTRSAVREKYLAFGGSN-------IDLESFVKVAGYS-- 79 + + + + + + + E ++ + Sbjct: 59 LQCEEEIKKITIAANQDDVINALKEQITNYFNKQQLDSKEKNSVIEEHEVLLESKKLTPL 118 Query: 80 -----------------------FYNTSEYSLSTLGSTNTRNNLESYI------------ 104 F +Y S + N Y+ Sbjct: 119 VVWYINNLDQVATFEKQMRRKVHFVIKPQYLWSNIYELARTQN--KYLLKNLQAGFKFIE 176 Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYK--ICKNFSGIELHPDTVPD--RVMSNIY 159 SF + +F + + S +L K L +C + I P+ ++ + Y Sbjct: 177 NESFDSTFRGLFSEVNLDS--DKLGKNYELRNTTLCSIITAIAEGLSEFPNESDLLGDAY 234 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI +F + + A +F TP+ + + + ++ ++ + D CG+G Sbjct: 235 EYLIGQFAAGSGKKAGEFYTPQQISTILSRIVTLDSQDPSTGKKERLKNILDFACGSGSL 294 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + + I +GQE T+ + ML+ L+ D I G Sbjct: 295 LINVRKQL-------GANSIGQIYGQEKNITTYNLARMNMLLHGLK-----DSEFKIFHG 342 Query: 280 STLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPK 330 +L D ++NPPF +WE + E RF GL Sbjct: 343 DSLLNDWDILTEMNPAKKLECDAVVANPPFSYRWEPNDT-------LAEDFRFKSYGLAP 395 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H + L G AI+L LF G A E +IR LL++ I+ I Sbjct: 396 KSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EEKIRTKLLKDGNIDTI 448 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LFF T I + +L K + V INA++ + GK++ ++ + Sbjct: 449 IGLPANLFFSTGIPVCILVLKKCK---KFDDVLFINASEYYDR----GKRQNVLMPEHID 501 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +I++ Y R+ RR+ + + F L+ + A+ L+ + Sbjct: 502 KIVETYKYRKEDDK--------KYSRRVSMEEIEKNDFNLNISRYVSTVAEEETIDLADV 553 Query: 511 HQSF 514 ++ Sbjct: 554 KKNL 557 >gi|42525885|ref|NP_970983.1| type I restriction-modification system, M subunit [Treponema denticola ATCC 35405] gi|41815935|gb|AAS10864.1| type I restriction-modification system, M subunit [Treponema denticola ATCC 35405] Length = 871 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 101/577 (17%), Positives = 206/577 (35%), Gaps = 103/577 (17%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + L +W + + L G + + IL ++ + ++ Sbjct: 6 SELYGSLWASCDSLRGGMDSSQYKDYILTLLFVKYVSD----------------KYKDMP 49 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126 G SF + L+ G ++ IA ++ + + I ++ F+ Sbjct: 50 YGEIEIPEGGSF----DDMLALRGKKGIGEGIDKVIAKLAEANDLRGIIDNAYFNDPTKF 105 Query: 127 ---LEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 E L ++ F + D ++ + YE+L++ F +E + F TP Sbjct: 106 GSGQEMVDKLTELLSIFCDKMPNFGKNRAEGDDIIGDAYEYLMKNFATESGKSKGQFYTP 165 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V + ++ + TLYDP CG+G L A PP + Sbjct: 166 AEVSRILAHVIGIEKAKSGES------TLYDPACGSGSLLIRAAET---------APPNV 210 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-------KRFH 293 GQE + T + +++ + + I+ G+T S+ + ++F Sbjct: 211 AVFGQEKDITTAGLAKMNLVLHNV-------ATAEIKSGNTFSEPKYKKHDDETALRQFD 263 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPN 351 + + NPPF K H + GRF P +G +L+H+ L+ Sbjct: 264 FAVVNPPFSDKNWT--------HGLQDFGRFDGYEERPPEKNGDFAWLLHVIKSLK---- 311 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+AA++L LF G A E+ IR+ L++ I+ I+ LP +LF+ T I + ++ Sbjct: 312 RNGKAAVILPHGVLFRGNA---EASIRKALIKKGFIKGIIGLPPNLFYGTGIPACIIVID 368 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 E+R+G + +I+A+ + + + + +I ++ +++ Sbjct: 369 KENAEKRKG-IFIIDASKDFIKD----NDKNRLRERDIYKITKVFNNKK----------- 412 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 P F+ + +E + + Q+ + ++ + + Sbjct: 413 ---------ELPYYSRFVF----IDEIEQNDYNLNIPRYIQNGTSEEVQNIEAHLRGGIP 459 Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 +E S + LK K F + KD Sbjct: 460 SEDIENLSAYWDTFPKLKSSLFKPLRHDFCSLAAEKD 496 >gi|254475169|ref|ZP_05088555.1| type I restriction-modification system, M subunit [Ruegeria sp. R11] gi|214029412|gb|EEB70247.1| type I restriction-modification system, M subunit [Ruegeria sp. R11] Length = 515 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 113/483 (23%), Positives = 189/483 (39%), Gaps = 58/483 (12%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAF 62 A +L IW A + G DF + +L R + + Y Sbjct: 4 QQQAEALRREIWSIANRVRGAVDGWDFKQFVLGALFYRFISENFTNYIEGGDDSISYAGM 63 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSL----------STLGSTNTRNNLESYIASFS--DN 110 ++I E+ V Y L + +T+ + AS S + Sbjct: 64 ADADIPEEAKVDAVKTKGYFIYPSQLFQNVVKTASKNDSLNTDLAEIFSAIEASASGYPS 123 Query: 111 AKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + I+ F DF +T RL +K L ++ K +G+ L + + + + YE LI Sbjct: 124 EQDIYGLFADFDTTSNRLGSTVKQKNERLTEVLKGVAGLPLKFEDNKNDLFGDAYEFLIS 183 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + +F TP V L L + + K +YDP G+G L A Sbjct: 184 NYAANAGKSGGEFFTPTHVSKLIAKLAMHNQTRVNK--------IYDPAAGSGSLLLQAK 235 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 GQE+ T+ + M + + D NIQ G+TL Sbjct: 236 EEFEKHIIEDG------FFGQEINYTTYNLARMNMFLHNINYDK-----FNIQYGNTLED 284 Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341 F + F +SNPP+ KW+ D RF P L S F++H Sbjct: 285 PHFQDDKPFDAIVSNPPYSVKWKGADDPT-----LINDDRFAPAGVLAPKSKADFAFVLH 339 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L + GRAAIV + G A E +IR++L++N+ +E +++L +LFF T Sbjct: 340 ALHYL----SATGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNLFFGT 392 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 IA + +L+ K + V+ I+AT+ T R G I+ D +I++++ S++ Sbjct: 393 TIAVNILVLAKNKKDTA---VRFIDATEEDTFFRK-GVNINIMEDRHIERIVEMFDSKDP 448 Query: 462 GKF 464 + Sbjct: 449 VPY 451 >gi|229088748|ref|ZP_04220305.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock3-44] gi|228694573|gb|EEL47992.1| Type I restriction-modification system, M subunit [Bacillus cereus Rock3-44] Length = 512 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 99/469 (21%), Positives = 192/469 (40%), Gaps = 72/469 (15%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70 +++ +L + L L E+Y + +I + Sbjct: 1 MDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTQEKQTELYRESLADEDIKND 60 Query: 71 SFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLE 128 + Y+ Y + L + +N + + + + +D F+ ++ Sbjct: 61 LIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQ--LNDLNKAFIDLSTKYDQFNGLFDDVD 118 Query: 129 -KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 K+ L ++ K + +++ V+ + YE LI +F SE + A + Sbjct: 119 LKSKKLGSDDQQRNITITEVLKKLNDVDVT--GHNGDVIGDAYEFLISQFASEAGKKAGE 176 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V + + + + +++DPT G+G + + +++ Sbjct: 177 FYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLMLNIRSYI-------NH 223 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY-- 294 P + HGQEL T+ + +++ ++ + R ++ G TL+KD T + + + Sbjct: 224 PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDTLNKDWPTDEPYTFDS 278 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L NPP+ KW D ++ R+G L S FL+H L+ G Sbjct: 279 VLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKDS----G 329 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 AIVL LF G A E IR+ LLE+ I+A++ +P +LFF T+I T + IL + Sbjct: 330 TMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGTSIPTTVIILKKNR 386 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 T V I+A++ +T GK + ++ + +I++ Y +RE+ + Sbjct: 387 TTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETYKNREDVE 428 >gi|229496095|ref|ZP_04389817.1| type I restriction-modification system, M subunit [Porphyromonas endodontalis ATCC 35406] gi|229316991|gb|EEN82902.1| type I restriction-modification system, M subunit [Porphyromonas endodontalis ATCC 35406] Length = 823 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 98/492 (19%), Positives = 186/492 (37%), Gaps = 79/492 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L +W++ L G + + +L ++ L Sbjct: 1 MAIKKSQLYRTLWESCNALRGSMDASQYKDYVLIILFVKYLSD----------------- 43 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSD-NAKAI----FED 117 + G SF +L + + + + NA+ I + Sbjct: 44 KAGQPGFRLNIPEGCSFR-----DFVSLKQNDKIGELMNIKLEAIKEMNARQIGDLALPN 98 Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171 F+ + + + + L ++ F L D ++ + YE+L++ F +E Sbjct: 99 FNDPAKLGIGRTMVE--TLSRLIGVFENDALDFSRNRAADDDLLGDAYEYLMKNFAAESG 156 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 F TP +V + +L + ++ T+YDPTCG+G L A+ Sbjct: 157 RRKGQFYTPAEVSRVMAKVLRIHELDRGEQ------TIYDPTCGSGSLLLRAL------- 203 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290 P + GQE + T A+ ML+ + + I+ G TL F Sbjct: 204 -AEASNPRVSICGQEKDGTTAALAKMNMLLHGI-------SNSEIKVGDTLGDPQFKQMG 255 Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346 F C++NPPF +K+ + R+ LP G FLMHL + Sbjct: 256 ILSTFDVCVANPPFS-----EKEWFSPALEKDTYERWTKELLPPAKCGDYAFLMHLIASM 310 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + GR A +L LF G A E IR+ ++ I+ I+ LP +LFF T I Sbjct: 311 KSEE---GRGACILPHGVLFRGNA---EYTIRKDIIRKRYIKGIIGLPANLFFGTGIPAS 364 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + ++ + + R+G + I+A + + +G K R + + ++I+D + +++ + Sbjct: 365 IIVIDKKDRDSRKG-IFFIDAKEGYM---KDGAKNR-LREQDIKRIVDAWEAQQPIPHYC 419 Query: 466 RMLDYRTFGYRR 477 RM+++ ++ Sbjct: 420 RMVEWSEIESKK 431 >gi|327404959|ref|YP_004345797.1| type I restriction-modification system, M subunit [Fluviicola taffensis DSM 16823] gi|327320467|gb|AEA44959.1| type I restriction-modification system, M subunit [Fluviicola taffensis DSM 16823] Length = 515 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 113/550 (20%), Positives = 206/550 (37%), Gaps = 68/550 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63 A L IWK A ++ G DF +L R + + Y Sbjct: 5 AQRAELQAKIWKIANEVRGSVDGWDFKHFVLGALFYRFISENFTKYIEGGDDGVDYPNLS 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 I E +K GY Y S+ ++ + NT NL + + + Sbjct: 65 DDVITPEIKDDAIKTKGYFIY-PSQLFVNVAKTANTNPNLNTDLKAIFVSIESSAFGYPS 123 Query: 108 SDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEH 161 ++ K +F DFD +T+ K L + K + + + + YE Sbjct: 124 EEDIKGLFADFDTTSSRLGNTVE--NKNSRLASVLKGVEQLNFGNFEDSEIELFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP V L L + + + K +YDP G+G L Sbjct: 182 LIGNYAANAGKSGGEFFTPVHVSKLIAQLAMHKQEKVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A H + GQE+ T+ + M + + D NI G+T Sbjct: 234 QAKKHFDNHVIEEG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIALGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L F + F +SNPP+ W D D RF P L S F Sbjct: 283 LIDPHFGDDKPFDAIVSNPPYSVNWIGDGDPT-----LINDDRFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H + L GRAAIV + G A E +IR++L++N+ +E ++AL +LF Sbjct: 338 VLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVIALAPNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+I+ + +LS KT+ K Q I+ + + ++ D ++++++ S Sbjct: 391 YGTSISVTILVLSKHKTD---TKTQFIDVSG--EDFFKKVTNNNVMTDTHIEKVMELFDS 445 Query: 459 RENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 +E+ + + +D + + ++ + L+ + +K + + Sbjct: 446 KEDVPYEAISIDNTKIAENEYNLSVSSYVEAKDNREQINILDLNKEVKK-TVEKINALRA 504 Query: 518 ILKPMMQQIY 527 + ++++I Sbjct: 505 DIDAIIKEIE 514 >gi|293400125|ref|ZP_06644271.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306525|gb|EFE47768.1| type I restriction-modification system, M subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 496 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 114/541 (21%), Positives = 201/541 (37%), Gaps = 74/541 (13%) Query: 26 FKHTDFGKVILPFTLLRRLECALE---------------------PTRSAVREKYLAFGG 64 + +F IL L E + AV E+ L G Sbjct: 1 MEAYEFKNYILGMIFYYYLSDRTEKYMANLLKDDGISYEDAWADEEYKEAVVEEALRDLG 60 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFSST 123 I+ + + N S + + L +ES + + S ++ +F D ST Sbjct: 61 FIIEPQFLFRKMVKMVENRS-FDIEFL-QKAINALMESTLGNDSQEDFDGLFSDMQLDST 118 Query: 124 IARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +L +++ ++ KI I + V+ N YE+LI +F + + A +F Sbjct: 119 --KLGHTVKDRSAVMAKIIAALDEINFGVEDTKIDVLGNAYEYLIGQFAATAGKKAGEFY 176 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP L L ++ DPTCG+G L N+ Sbjct: 177 TPSGPAELLCRLACLGLTD--------VKDAADPTCGSGSLLLRLKNYANVRN------- 221 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 +GQEL T+ + M++R + + NI G TL D F +F ++N Sbjct: 222 ---YYGQELTSTTYNLARMNMILRGI-----PYRNFNIYNGDTLEHDYFGDMKFRVQVAN 273 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PP+ KW D +E N L S F+ H+ + ++ GRA + Sbjct: 274 PPYSAKWSGDLSFMEDPRFNEY-----GKLAPKSKADFAFVQHMVHHMDED----GRAVV 324 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +L LF G A E IR+ L++ ++++A++ LP +LFF T I + +L + Sbjct: 325 LLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVIGLPANLFFGTGIPVCVLVLKRERNGN 381 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR 476 + I+A++ + + GK + I+ + +I++ Y RE+ K++ + + Sbjct: 382 -SDNILFIDASNDFEA----GKNQNILRECDIDKIVETYERREDVDKYAHVATMQEIEEN 436 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + P + + + E RKL LKP ++ E Sbjct: 437 GFNLNIPRYVDTFEPEEEIDLNEVAAEIRKL-QSEIKDIDAELKPFFDELGLDFPFEVEG 495 Query: 537 K 537 K Sbjct: 496 K 496 >gi|312110992|ref|YP_003989308.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y4.1MC1] gi|311216093|gb|ADP74697.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y4.1MC1] Length = 515 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 196/549 (35%), Gaps = 73/549 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +++ A + G D+ +LP LR L E R + + + ++ Sbjct: 13 LFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDPSSDWYTEDDEMR 72 Query: 75 ----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 A F E S S + + N++ + + + E+ + + Sbjct: 73 QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGIL 130 Query: 125 ARLEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R+ + L + + FS +T ++ YE+ I F + +F Sbjct: 131 PRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGEFF 190 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L A+L ++DP CG+GG + + Sbjct: 191 TPSSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKH 232 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 L +GQE T + +L+ + ++ I+ G +L D F + Y ++N Sbjct: 233 ALSFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYVIAN 284 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + + + R + S+ + +++ H L N G A Sbjct: 285 PPFN------QKDWGADRLSKNDPRLIGPVTN-SNANYMWMQHFLYHL----NDTGTAGF 333 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V+++ + E E+R+ L++ I+ IV LP LFF T I L+ LS + + Sbjct: 334 VMANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKN 391 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + ++ I+A + T + K++ ++ ++ QI +Y + + + D Sbjct: 392 GYRARKNEILFIDARKMGTLVSR---KQKALSKEEIDQIAAVYRAYKYDGAEKYEDI--V 446 Query: 474 GYRRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIY 527 G+ ++ K+ + L E D+ + K++ L Q + Q Sbjct: 447 GFCKVAKIEEVRANDYKLTPGIYVGTEVSNEDDVPFEEKMAELTQRLLEQFEESNRLQEK 506 Query: 528 PYGWAESFV 536 E + Sbjct: 507 IRKDLEELL 515 >gi|325283701|ref|YP_004256242.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus proteolyticus MRP] gi|324315510|gb|ADY26625.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus proteolyticus MRP] Length = 522 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 94/468 (20%), Positives = 183/468 (39%), Gaps = 55/468 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT T ++L +W A+ + K ++ +L L + + + Sbjct: 1 MTNSTD-LSALEKRLWDAADQMRANSKLKSHEYSTPVLGLVFLSYADYRFQNKAEEI--- 56 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 +D + +A Y + S L N+ + I + +A ++ Sbjct: 57 -------GLDADPDDFMAEGVLYVPEKARYSELLKLPEGANIGAAINEAMNAIEA--QNP 107 Query: 119 DFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 D + + ++ LL + K+F+ +L + ++E+ + F Sbjct: 108 DLTGALPKMYNRLDNSLLAGMLKSFTFSDLT-AGLQGDAFGRVFEYFLGEFARNEGSKGG 166 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP+ +V L ++ +YDP CG+GG + V Sbjct: 167 EFYTPQSLVKLMVEIM-----------EPFHGKIYDPACGSGGMFVQSARFVEQHQRSA- 214 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHY 294 L +GQE ET + + I L D I+QG+T +DL +F + Sbjct: 215 -ADDLSVYGQEKTSETARLARMNLAIHGLSGD--------IKQGNTFYEDLHASPGKFDF 265 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF V+KE + + R G P + + L+L ++A+ L N GG Sbjct: 266 AMANPPFNV------KGVDKERISNDQKRLPYGTPSTDNANYLWLQYIASSL----NSGG 315 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RA +V+++S A E IR+ ++E+ +++ +VA ++LF+ + LW + K Sbjct: 316 RAGVVMANSA---SDARGSEQLIRQRMIEDGVVDVMVATSSNLFYTVTLPATLWFMDKGK 372 Query: 415 TEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 R V I+A + + + ++ R + I+++Y + Sbjct: 373 KGTPREDTVLFIDARNTYQQVTRAIRELRDDQVELLANIVNLYRGEAD 420 >gi|295401867|ref|ZP_06811831.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus thermoglucosidasius C56-YS93] gi|294976121|gb|EFG51735.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus thermoglucosidasius C56-YS93] Length = 515 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 97/549 (17%), Positives = 194/549 (35%), Gaps = 73/549 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +++ A + G D+ +LP LR L E R + + + ++ Sbjct: 13 LFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDPSSDWYTEDDEMR 72 Query: 75 ----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 A F E S S + + N++ + + + E+ + + Sbjct: 73 QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGIL 130 Query: 125 ARLEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R+ + L + + FS +T ++ YE+ I F + +F Sbjct: 131 PRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGEFF 190 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L A+L ++DP CG+GG + + Sbjct: 191 TPSSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKH 232 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 L +GQE T + +L+ + ++ I+ G +L D F + Y ++N Sbjct: 233 ALSFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYVIAN 284 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + + + R + S+ + +++ H L N G A Sbjct: 285 PPFN------QKDWGADRLSKNDPRLIGPVTN-SNANYMWMQHFLYHL----NDTGTAGF 333 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V+++ + E E+R+ L++ I+ IV LP LFF T I L+ LS + + Sbjct: 334 VMANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKN 391 Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + ++ I+A + T + K++ ++ ++ +I +Y + + D Sbjct: 392 GYRARKNEILFIDARKMGTLVSR---KQKALSKEEIDKIAAVYRAYKYEGAEGYEDV--V 446 Query: 474 GYRRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIY 527 G+ ++ + + L E DI + K++ L Q + Q Sbjct: 447 GFCKVATIDEVRANDYKLTPGIYVGTEVSDEDDIPFEEKMAELTQRLLEQFEESNRLQEK 506 Query: 528 PYGWAESFV 536 E + Sbjct: 507 IKKDLEELL 515 >gi|294502095|ref|YP_003566160.1| Type I restriction modification enzyme, M subunit [Salinibacter ruber M8] gi|294342079|emb|CBH22744.1| Type I restriction modification enzyme, M subunit [Salinibacter ruber M8] Length = 510 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 116/544 (21%), Positives = 196/544 (36%), Gaps = 66/544 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + L + ++ A+ + TD+ ILP + + + E+ Sbjct: 15 MSLTLDELESHLYGCADKIRNAVDKTDYKDFILPLVFYKTISDTYQDELEKWTEELG--- 71 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---------TRNNLESYIASFSDNAKAI 114 D + + F YS L + N L + + + + + Sbjct: 72 ----DEDLARDPDLHDFVVPEGYSWEKLRALNPQETNYDEFIGEALNAIEDANPEKLEGV 127 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F L + ++ S L + VP ++ Y L+R F E + Sbjct: 128 FRADYVR---EDALDNTRLGALVEHLSTYNLSANNVPPDMLGEAYMDLVRHFAEEEGKEG 184 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L L+ G +DPT G+GG L +A +H D Sbjct: 185 GEFFTPPKIVRLMVCLVAPF---------GDGDEFHDPTVGSGGMLVEAAHHYRD--EQD 233 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290 P L GQEL P+ A+ + I I++ +L FT Sbjct: 234 GEPSHLRLTGQELNPDIAAIAKMNLFIHGYNG--------QIEREDSLGAPQFTENGQLG 285 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLEL 348 F Y L+N PF W K + ++ GRF LP+ G F+MH+AN+L Sbjct: 286 CFDYVLANFPFSADWPKS------DLQDDAYGRFDWHEKLPRADRGDYAFIMHMANQL-- 337 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 N G+AAIV+ LF E R +LE DL+EA++ LP +LF +I + + Sbjct: 338 --NATGQAAIVIPHGVLFR----KYEGRYREPMLEGDLVEAVIGLPENLFQNNSIPSAIL 391 Query: 409 ILSNRKTEERRGKVQLINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFS 465 +L+ K EER G+V ++A D + + N + + + I+ + + S Sbjct: 392 VLNRDKPEEREGEVLFVHAADEAFYEELSN----QNELTEGGLDHIIRNFNDWITEERVS 447 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 R + + L + + + E R L + L M+ Sbjct: 448 RAVPIEEIRENDYNLNIALFVDTTEPEEPIDVAEELTKLRHLQE-ERDEIESQLNEYMKA 506 Query: 526 IYPY 529 + Sbjct: 507 LDYE 510 >gi|241888682|ref|ZP_04775989.1| type I restriction-modification system, M subunit [Gemella haemolysans ATCC 10379] gi|241864705|gb|EER69080.1| type I restriction-modification system, M subunit [Gemella haemolysans ATCC 10379] Length = 526 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 122/555 (21%), Positives = 210/555 (37%), Gaps = 78/555 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64 A L IW+ A+D+ G DF + IL R + + R+ + F Sbjct: 13 QRAELHRKIWEIADDVRGAVDGWDFKQYILGILFYRFISENMRDYFNRAEREAGAVDFNY 72 Query: 65 SNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTR-NNLESYIA------------ 105 + + + +K V F+ + T T+ +NL + + Sbjct: 73 AELSDDEALKYFKPGTVKEKGFFILPSQLFENIVKTATKEDNLNAKLDTIFKEIEASAIG 132 Query: 106 -SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158 + ++ K +F D D +S RL EK L I S + + Sbjct: 133 SASEEDFKGLFRDVDLTS--DRLGESVPEKNMKLTSILVGISELNFGNFEDNHIDAFGDA 190 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + S + +F TP+ V L +++D D I +YDPTCG+G Sbjct: 191 YEYLISNYASNAGKSGGEFFTPQTVSRLLAKIVVDGKD--------KINKVYDPTCGSGS 242 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + +GQE+ + + M + + + I++ Sbjct: 243 LLLQMRKF-------ECVEIEEGYYGQEINMTNYNLARMNMFLHNVNYNDFS-----IKR 290 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G TL +R F +SNPP+ KW D D RF P L S Sbjct: 291 GDTLLNPYHGEERPFDAIVSNPPYSIKWIGDADPT-----LINDERFAPAGKLAPKSYAD 345 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F+MH + L GRAAIV + A E IR++L++N+ ++ ++ LP Sbjct: 346 YAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---EKTIRKYLVDNNFVDCVIQLPD 398 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T+IAT + +L+ KTE K I+A+ + N I+ + I++ Sbjct: 399 NLFFGTSIATCVLVLAKNKTE---NKTLFIDASKEFKKETN----NNILEEKNIDNIIEE 451 Query: 456 YVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPL 510 + +R + + FSR +D + + + + E T K+ L Sbjct: 452 FRNRADVEHFSRYVDSSEIEENDYNLSVSTYVEKEDTREKIDIKVLNKEIAETVEKIDEL 511 Query: 511 HQSFWLDILKPMMQQ 525 ++ +I++ + Sbjct: 512 -RASIDEIVRELESD 525 >gi|15678962|ref|NP_276079.1| type I restriction modification enzyme, subunit M [Methanothermobacter thermautotrophicus str. Delta H] gi|2622040|gb|AAB85440.1| type I restriction modification enzyme, subunit M [Methanothermobacter thermautotrophicus str. Delta H] Length = 616 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 114/521 (21%), Positives = 204/521 (39%), Gaps = 59/521 (11%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 A + + A+ + + IL ++++ E A + Sbjct: 119 ADIERILKGAADLIRTRVD---YK-FILVLLFMKQMSDKWMMEYQKAYE--DAIKEYGLS 172 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIFEDF 118 E A S Y+ + L N R ++E+ +A + K + + F Sbjct: 173 EEEARLEARNSAYHDLDIKEEYL-WDNIRKDVENLPIKFAGALKNLAELNPAFKDVVDAF 231 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF E +L ++ + FS +L V ++ + YE ++R F ++ + Sbjct: 232 DFVEFTQSQENREILRQLVELFSEKKLT--NVDPDILGDAYEWILRYFAPTKAKE-GEVY 288 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L +L P ++YDP + G L + +V + + Sbjct: 289 TPREVIRLLVEIL----------DPKPGESVYDPASASNGMLIISHKYVKETYGEAE--- 335 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294 L +GQE+ +T A+ M I ++ +I G TL F RF Sbjct: 336 RLFLYGQEVNRKTMALGSMNMYIHDIK-------DHHIAHGDTLLYPKFKESDGIMRFDV 388 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ + + + ++ RF G ++ H+ + G Sbjct: 389 VIANPPWNQDGYGEDTLKKGDYWRE---RFRYGFVNKQSADWAWIQHMIASAKDD----G 441 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R +V+ + LF G E IR +LE+DLIEA++ LP LF+ T + IL+ K Sbjct: 442 RIGVVIDNGCLFRGGR---EKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNKDK 498 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473 EERRGKV INA + + +K I++D +IL+ Y + + FSR++D Sbjct: 499 DEERRGKVLFINAGEEYEKHPEV-RKLNILSDGNIERILEAYREFQGDDGFSRVVDLDEI 557 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + PL + + L ++ W +LS + + Sbjct: 558 RENDYNLNVPL---YAFPEEELEDIDVAGEWMRLSEIEEEL 595 >gi|327330728|gb|EGE72474.1| type I restriction-modification system, M subunit [Propionibacterium acnes HL097PA1] Length = 522 Score = 267 bits (682), Expect = 6e-69, Method: Composition-based stats. Identities = 102/508 (20%), Positives = 191/508 (37%), Gaps = 80/508 (15%) Query: 1 MTEFTG--SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE- 57 M T + L IW+ A DL G DF +L R + E + E Sbjct: 1 MVPTTKEMQRSELHKTIWRIANDLRGSVDGWDFKTYVLGMMFYRFIS---ENLTDYINEG 57 Query: 58 ---------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASF 107 Y ++ V F+ + + ++ NL + Sbjct: 58 EWRAGDTDFNYCNLSNADAKDIFEEMVTEKGFFIFPSDLFVNVRARAAQDENLNETLEGV 117 Query: 108 SDNA-------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPD 148 N K +F D D +S RL ++ L K+ + L + Sbjct: 118 FRNIEGSAAGTPSERDLKGLFADLDVNS--PRLGATVAQRNRKLVKVLDAIGDLPLGSFE 175 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + YE+L++ + S+ + ++ TP++V + + + I Sbjct: 176 DNSIDLFGDAYEYLMQMYASQAGKSGGEYFTPQEVSEVLARIAVGDKK--------RIGK 227 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP G+G L + + +GQE+ T+ + M + + + Sbjct: 228 VYDPAVGSGSLLLKFAKLL-------GPENVKGFYGQEINLTTYNLARINMFLHGINYE- 279 Query: 269 RRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I G TL+ + K F +SNPP+ KWE + + R+ P Sbjct: 280 ----QFDIVLGDTLTNPMHRDKEPFEAIVSNPPYSTKWEGSDNPL-----LINDDRYAPA 330 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L S + F MH+ + L G AA+V L+ A E +IR++L++N+ Sbjct: 331 GVLAPKSKADLAFTMHILSSLAT----NGTAAVVEFPGVLYRVGA---ERKIRKYLIDNN 383 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++ ++ LP DLFF T IAT + +L K + V ++A+ ++ G K ++++ Sbjct: 384 YVDTVIQLPPDLFFGTTIATCVIVLKKSKKDNS---VLFVDASAEFS---RVGNKNKLLS 437 Query: 446 DDQRRQILDIYVSR-ENGKFSRMLDYRT 472 +Q +I+++ +R E ++ Sbjct: 438 ANQ-DRIVELVSARSEEPHVCTLVHNED 464 >gi|116330071|ref|YP_799789.1| Type I restriction-modification system, methyltransferase subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116123760|gb|ABJ75031.1| Type I restriction-modification system, methyltransferase subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 513 Score = 267 bits (682), Expect = 6e-69, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 182/489 (37%), Gaps = 65/489 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVRE 57 MT A+L IW+ A D+ G DF + +L R + + + Sbjct: 1 MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSID 59 Query: 58 KYL--------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTR---NNLESYIA 105 I + F N S+ + +T+ +E+ Sbjct: 60 YAKLPDKRITREIKDDAIKTRGYFIYPSQLFANVVSKADDNESLNTDLAAIFKAIETSAN 119 Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158 F + I F DF +T RL +K L + K + ++ + + Sbjct: 120 GF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDA 178 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI + + + +F TP+ V L L + I +YDP CG+G Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAI--------HKQTRINKIYDPACGSGS 230 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A D GQE+ T+ + M + + D +I+ Sbjct: 231 LLLQAKKQFDDHIIEEG------FSGQEINHTTYNLARMNMFLHNINYDKF-----DIEL 279 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335 G+TL ++ F +SNPP+ W+ D RF P L S Sbjct: 280 GNTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLDPKSKAD 334 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F++H + L GRAAIV + G A E +IR++L++N+ +E +++L Sbjct: 335 FAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAP 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LFF T IA + +LS KT+ Q I+A+ L+ N I+ D QI+ Sbjct: 388 NLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETNT----NILTDKHIEQIMQT 440 Query: 456 YVSRENGKF 464 + S+ + + Sbjct: 441 FDSKIDKEH 449 >gi|229521080|ref|ZP_04410501.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae TM 11079-80] gi|229341965|gb|EEO06966.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae TM 11079-80] Length = 529 Score = 267 bits (682), Expect = 6e-69, Method: Composition-based stats. Identities = 119/491 (24%), Positives = 181/491 (36%), Gaps = 67/491 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59 A L IW A D+ G DF + +L R + Sbjct: 5 QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGDESVNYAAMS 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111 E +K GY Y S+ + + + NL + +A+ Sbjct: 65 DDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANAHKNENLNTDLAAIFAAIENSANGYD 123 Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHL 162 K I F DF +T RL K L + K SG+ + + + YE L Sbjct: 124 SEKDIKGLFADFDTTSNRLGNTVEAKNKCLAAVLKGVSGLNFGSFEENQIDLFGDAYEFL 183 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + + + +F TP+ V L L + ++ K +YDP G+G L Sbjct: 184 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 235 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A H GQEL T+ + M + + D NIQ G TL Sbjct: 236 AKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTL 284 Query: 283 SKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336 + F +R F +SNPP+ KW D RF P L S Sbjct: 285 IEPHFLEERNNRGFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 339 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F++H + L GRAAIV + G A E +IR++L++N+ +E +++L + Sbjct: 340 AFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 392 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN---EGKKRRIINDDQRRQIL 453 LFF T IA + +LS KT+ Q I+A+ L+ N N +QI+ Sbjct: 393 LFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETNNNVLTDNDDEKNPGHIQQII 449 Query: 454 DIYVSRENGKF 464 ++ S+EN Sbjct: 450 KVFASKENVDH 460 >gi|325281058|ref|YP_004253600.1| type I restriction-modification system, M subunit [Odoribacter splanchnicus DSM 20712] gi|324312867|gb|ADY33420.1| type I restriction-modification system, M subunit [Odoribacter splanchnicus DSM 20712] Length = 518 Score = 267 bits (682), Expect = 6e-69, Method: Composition-based stats. Identities = 113/486 (23%), Positives = 190/486 (39%), Gaps = 66/486 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63 L + IWK A ++ G DF + +L R + + Y + Sbjct: 5 QQREQLQSQIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTDYIEGGDDSIDYASLP 64 Query: 64 GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 S I E VK GY Y S+ + + + NT NL + + + Sbjct: 65 DSVITPEIKDDAVKTKGYFIY-PSQLFGNVVKTANTNPNLNTDLKAIFDSIESSANGYAS 123 Query: 108 SDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161 N K +F DFD +T+ K L + K G+ + + + YE Sbjct: 124 EKNIKGLFADFDTTSTRLGNTVE--NKNSRLAAVLKGVEGLNFGNFEEHEIDLFGDAYEF 181 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI + + + +F TP++V L + L + + K +YDP G+G L Sbjct: 182 LINNYAANAGKSGGEFFTPQNVSKLISQLAMHKQATVNK--------IYDPAAGSGSLLL 233 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A D GQE+ T+ + M + + D NI G+T Sbjct: 234 QAKKQFEDRIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIALGNT 282 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338 L+ F + F +SNPP+ W D RF P L S F Sbjct: 283 LTDPQFGDDKPFDAIVSNPPYSVNWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAF 337 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H + L GRAAIV + G A E +IR++L++++ IE I++LP++LF Sbjct: 338 VLHSLSYLSSR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDSNFIETIISLPSNLF 390 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+IA + +LS K + K+Q I+A+ + ++ + +I+D + Sbjct: 391 YGTSIAVNILVLSKHKPD---TKIQFIDASGESFFTKET--NNNVLENKHIDRIIDFFDK 445 Query: 459 RENGKF 464 +E+ + Sbjct: 446 KEDVDY 451 >gi|91216783|ref|ZP_01253747.1| type I restriction-modification system DNA methylase [Psychroflexus torquis ATCC 700755] gi|91184944|gb|EAS71323.1| type I restriction-modification system DNA methylase [Psychroflexus torquis ATCC 700755] Length = 546 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 198/594 (33%), Gaps = 81/594 (13%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + A + +WK A +L G + ILP L+ + E + + + Sbjct: 1 MPKNQTKADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISEKYEVRKEELFQAL 60 Query: 60 LAFGGSNID----------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---------- 99 G + ++ ++ E + L ++N Sbjct: 61 NDKGSDYYTNDTEEQNYVLEDPDEYLSKNTYIIPKEATWQYLQDNAEQDNIKVLVDNAFD 120 Query: 100 -LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK-NFSGIELHPDTVPDRVMSN 157 L+ +A F K I S + + AGL+ + K S E ++ Sbjct: 121 LLDDTLAEFRPELKGILPRIFVKSQLTPKQVAGLINLLAKPKLSEKENPGS----DILGR 176 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+ I +F GA F TP +V L ++ ++D CG+G Sbjct: 177 VYEYYIGKFAIAEGSGAGQFFTPSSIVRLLVEMI-----------EPYQGKIFDNACGSG 225 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 G ++ + G + +GQE T +C + +R L D ++ Sbjct: 226 GMFIQSLKFLQAHGGD---KKNISIYGQERYDGTLRLCKMNLALRDLSFD--------VR 274 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSM 336 G +L +D F + + NPPF +D G F + + Sbjct: 275 LGDSLLQDKFPDLEADFIIVNPPFNVSQWHPEDLPENDPRLFGTKEEF----TTDGNANY 330 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 +++ N L + G AA+V+++ + + GE +R+ ++++ +++ IV LP Sbjct: 331 MWMQTFWNHL----SDTGTAAVVMANGAMTSN--TKGEKNVRQHMVDHGMVDCIVRLPDK 384 Query: 397 LFFRTNIATYLWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 LF T I ++ILS K +R +V I+ + K R+ ++ + Sbjct: 385 LFLTTGIPACIFILSKNRDGKDGKHRKRDNEVLFIDLSKHGRMESR---KLRVFDEADLQ 441 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 + D Y + N K S +D+ G + K Sbjct: 442 KATDTYHAWRNIKDSVTSSDSAKA------ELYREADTYIDQPGFSYSANLEEIAKQDYK 495 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 + + P+ +K +++ K + ++ F Sbjct: 496 LTPGIYVGTEAVEDDGIPFEHKMETLKAQLQTQ------FKTGNALQKQILDNF 543 >gi|86158751|ref|YP_465536.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775262|gb|ABC82099.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C] Length = 538 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 120/571 (21%), Positives = 215/571 (37%), Gaps = 55/571 (9%) Query: 2 TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 TE +AA+L +W A++L K ++ + IL L+ + R+ + + Sbjct: 7 TEKDVAAATLEKRLWAAADELRANSGLKSAEYSQPILGLIFLKFADARFAVRRAELAKVT 66 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 GS +D + G F SE S L + D+A E + Sbjct: 67 TGRRGSRVDDPASYHAEGVLF-LASEARFSELLEFPEGGRDGKTLGQAVDDAMRAVERDN 125 Query: 120 --FSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + + KA L ++ K FS I P + IYE+ + F +G Sbjct: 126 EQLAGVLPKTYQQFKARPLKELLKAFSAI---PVDLEGDSFGKIYEYFLGEFAMAEGQGG 182 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ +V L +L + DP CG+GG + V++ Sbjct: 183 GEFYTPQPIVRLMVEIL-----------EPFKGRVLDPACGSGGMFVQSARFVSEH---- 227 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTG-K 290 K L HG E T +C + + LE D I+ G ++ D Sbjct: 228 KKNGGLAIHGVEKVDTTGQLCRMNLAVHGLEGD--------IRHGGEINSYYDDPHNAVG 279 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF + L+NPPF + DKD + G RF G+P + + + L++ + L Sbjct: 280 RFDFVLANPPFNVD-KVDKDRIRD--AVGPGRRFPFGVPNVDNANYLWIQLFYSALNES- 335 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GRA V++SS A + E E+RR L+E+ ++ I+++ + +F+ + LW L Sbjct: 336 ---GRAGFVMASSA---PDARASEQELRRKLIESRAVDVIISVGSKMFYTVALPCTLWFL 389 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 K ++RR KV I+A ++ R + R + Q + ++ + Sbjct: 390 DRGKPKDRRDKVLFIDAQHIY---RQVDRAHRDWTEAQIGFLANVARLFRREEVDLTFGG 446 Query: 471 RTFGYRRIKVL--RPLRMSFI--LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 YR +V +P ++ +E + + + + Sbjct: 447 AEAKYRLREVFGNKPTYADVAGFCKAATISEIEKQAWSLNPGRYVGAAQGEEVSDEDFRT 506 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFI 557 G AE F + ++ E + + K + + Sbjct: 507 QFEGLAEEFETLTAEAREFEKVITKTAAEIL 537 >gi|313611002|gb|EFR85913.1| type I restriction enzyme EcoprrI M protein [Listeria monocytogenes FSL F2-208] Length = 417 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 94/448 (20%), Positives = 154/448 (34%), Gaps = 72/448 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------------SA 54 ++ + +W A +L G + + +L + L T Sbjct: 3 TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETYKSIAGKGQLSEAEL 62 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103 V E +L+ ++ F + L N E Sbjct: 63 VEEYVKDRAYHGENLDKMIQSVLGYFVLPEHLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122 Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I + SD+ + +F T L E++ + + + F + + V+ Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE+LI +F E + A +F TPR V + + I ++YDPT G+ Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L H+ + + L +GQE T+ + +L+ + + + Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVHPEKMS-----V 282 Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327 + G TLS+D F + NPP+ K + RF Sbjct: 283 KNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFEIAGV 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP S G FL+H L G AIVL LF G E EIR+ LL + I Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT 415 + I+ LP +LF T I + IL + Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRA 417 >gi|146302128|ref|YP_001196719.1| type I restriction-modification system, M subunit [Flavobacterium johnsoniae UW101] gi|146156546|gb|ABQ07400.1| type I restriction-modification system, M subunit [Flavobacterium johnsoniae UW101] Length = 515 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 115/491 (23%), Positives = 190/491 (38%), Gaps = 67/491 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 MT T A L IWK A ++ G DF + +L R + A + Sbjct: 1 MT-STAQRAELLAKIWKIANEVRGAVDGWDFKQFVLGTLFYRYISENFTNYIEAGDDSID 59 Query: 59 YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI----------- 104 Y + I E +K GY Y S+ ++ + NT NL + + Sbjct: 60 YASLSDDVITPEIKDDAIKTKGYFIY-PSQLYVNIAKTANTNPNLNTDLKNIFTAIESSA 118 Query: 105 ASF--SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMS 156 + + K +F DF +T +RL K L + K + + + Sbjct: 119 NGYPSEEAIKGLFA--DFDTTSSRLGNTVENKNSRLASVLKGVEELNFGNFEDNKIDLFG 176 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE LI + + + +F TP V L L + + + K +YDP G+ Sbjct: 177 DAYEILISNYAANAGKSGGEFFTPVHVSKLIAQLAMHKQEKVNK--------IYDPAAGS 228 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A H D GQE+ T+ + M + + D NI Sbjct: 229 GSLLLQAKKHFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYDK-----FNI 277 Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 G TL + + F +SNPP+ KW D D RF P L S Sbjct: 278 ALGDTLHHPHYIDDKPFDAIVSNPPYSIKWIGDDDPT-----LINDDRFAPAGVLAPKSK 332 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 F++H + L GRAAIV + G A E +IR++L++N+ +E I+++ Sbjct: 333 ADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETIISV 385 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 +LF+ T+IA + +LS KT+ Q I+A+ + ++ D +I+ Sbjct: 386 APNLFYGTSIAVTILVLSKHKTDTTT---QFIDASG--EDFFKKVTNNNMMTDTHIDKIM 440 Query: 454 DIYVSRENGKF 464 +++ S+ + + Sbjct: 441 ELFDSKVDVEH 451 >gi|296121477|ref|YP_003629255.1| Site-specific DNA-methyltransferase (adenine- specific) [Planctomyces limnophilus DSM 3776] gi|296013817|gb|ADG67056.1| Site-specific DNA-methyltransferase (adenine- specific) [Planctomyces limnophilus DSM 3776] Length = 533 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 95/477 (19%), Positives = 177/477 (37%), Gaps = 61/477 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + +W +A++L K +++ +L LR + + + Sbjct: 1 MANGHTEIERRLWASADELRANSKLKSSEYSVPVLGLIFLRYADHRFTQAERELNVLFAK 60 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNL---ESYIASFSDNAKAI 114 GS + A + E S L + + I ++ K I Sbjct: 61 KSGSRRAIGKEDFQAKGVMFLPPESRFSALLELPEGEDIGKAITTAMKAIEKENEELKGI 120 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 T +++E L + KN S I P IYE+ + F + Sbjct: 121 LPK-----TYSKIE-NTTLVSLLKNLSSI---PVDAEGDTFGKIYEYFLGNFARAEGQKG 171 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L ++ +YDP CG+GG + + + H+ Sbjct: 172 GEFFTPTSLVKLIVEII-----------QPYHGRIYDPACGSGGMFVQSADFIKAH--HN 218 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293 + +GQE ET +C + + L D I+QG+T +D +F Sbjct: 219 NPAVEISIYGQERVDETRQLCQMNLAVHGLSGD--------IRQGNTYYEDPHESVGKFD 270 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + K E RF G+P+ + + L++ + L N Sbjct: 271 FVMANPPFNVD-------KVDKEKLKEDPRFPLGMPRADNANYLWIELFYSSL----NAT 319 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+++S A E EIR+ LL+ +++ ++A+ + F+ + LW L Sbjct: 320 GRAGFVMANSA---ADARQSEMEIRQKLLKAHVVDVMIAIGPNFFYTVTLPCTLWFLDKG 376 Query: 414 KTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K+ +R+ +V I+A ++ + +K + I+ +Y E +F Sbjct: 377 KSNLSGKGSQRKEQVLFIDARHIFRQVDRAHRKFSPKQLEYIANIVRLYRG-EQPEF 432 >gi|290969061|ref|ZP_06560596.1| type I restriction-modification system, M subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781017|gb|EFD93610.1| type I restriction-modification system, M subunit [Megasphaera genomosp. type_1 str. 28L] Length = 527 Score = 266 bits (680), Expect = 1e-68, Method: Composition-based stats. Identities = 116/560 (20%), Positives = 207/560 (36%), Gaps = 78/560 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52 T+ L IW A++L G DF IL R + L E + Sbjct: 4 TKKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENLTNYINHGEIEAGK 63 Query: 53 SAVR------EKYLAFGGSNIDLESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESY 103 E+ ++ + F + F N S + + + LE+ Sbjct: 64 PNWDFAKISDEEAEEARAGLVEEKGFFILPSELFANIRKKSNEDMEWAKA-HLNETLEAV 122 Query: 104 IASFSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-D 148 ++++ +F DFD +S +L ++ L K+ + + L Sbjct: 123 FRHIEESSQGSEAESDFAGLFADFDVNS--NKLGATVAKRNEKLVKLLNGVADMNLGSVQ 180 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + YE+L+ + S + +F TP DV L T L + K Sbjct: 181 DHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVRKTEVNK-------- 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG+G L K +GQE+ T+ +C M + +E D Sbjct: 233 VYDPACGSGSLLLK------SLKVLGKEGVRNGFYGQEINITTYNLCRINMFLHDVEFDK 286 Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 ++ TL + F +SNPP+ KW +DA RF P Sbjct: 287 F-----DVACEDTLVSPQHWDDEPFELIVSNPPYSIKWAGSEDAT-----LINDPRFAPA 336 Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L S + F+MH + L G AAIV ++ G A E +IR++L++N+ Sbjct: 337 GVLAPKSKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EKKIRQYLVDNN 389 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+ I+ LP++LFF T+IAT + ++ KT+ R I+A++ + N + Sbjct: 390 FIDCIIQLPSNLFFGTSIATCIMVMKKNKTDNRT---LFIDASNECVKVTN----NNKLT 442 Query: 446 DDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 + +I+ I+ RE + + Y + + + + ++ + Sbjct: 443 PENIDRIVAIFTKREEVAHIAHLASYEEVKENDFNLSVSTYVEAADTREKIDIVKLNAEI 502 Query: 505 RKLSPLHQSFWLDILKPMMQ 524 +++ Q +I K + + Sbjct: 503 KEIVAREQVLREEIDKIIAE 522 >gi|149196779|ref|ZP_01873832.1| putative type I restriction-modification system, methyltransferase subunit (N-6 DNA Methylase) [Lentisphaera araneosa HTCC2155] gi|149139889|gb|EDM28289.1| putative type I restriction-modification system, methyltransferase subunit (N-6 DNA Methylase) [Lentisphaera araneosa HTCC2155] Length = 862 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 106/542 (19%), Positives = 201/542 (37%), Gaps = 80/542 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------EPTRSAVR 56 + LA IW++A + + ++ IL F + L L E + Sbjct: 2 NKQELAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSVQLTNFALEQGMTEEDIEGLN 61 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAK 112 E+ A + F + + T N+ +++F N K Sbjct: 62 EEDEATVDYFKQELGYFISYDDLFS-----TWLKPETEFTVANVRDALSAFGRLIHPNHK 116 Query: 113 AIFED-FD-FSSTIARLEKA--------GLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 +F+ F+ + +++L ++ L + KN V+ IYE+L Sbjct: 117 KLFDGIFNTLETGLSKLGESAQKQTKAINDLLHLIKNI----PMDGQQGYDVLGFIYEYL 172 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F + + A +F TP +V L + + +YDPT G+G L + Sbjct: 173 IEKFAANAGKKAGEFYTPHEVSLLMSEITAHHLKGN------ETIEIYDPTSGSGSLLIN 226 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 V + + + + QEL+ T+ + +++R + + ++ G TL Sbjct: 227 IGTSV---AKYIENKDSIKYYAQELKGNTYNLTRMNLIMRGILPNNIE-----VRNGDTL 278 Query: 283 SKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 +D + R +SNPP+ +KW+ + RF GL Sbjct: 279 EEDWPYFDDNDPHGSYRHLRVDAVVSNPPYSQKWDSVNKETDPR-----YARF--GLAPK 331 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + FL+H ++ G +IVL LF E EIR+ L+EN+ IE I+ Sbjct: 332 TKADFAFLLHDLYHVKPD----GIMSIVLPHGVLFRVGE---EGEIRKQLIENNHIETII 384 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP ++FF T I T + +L ++ V +++A+ + K + ++ Sbjct: 385 GLPANIFFGTGIPTIILVLRQKRQG---DDVLIVDASKHFIKE----GKSNKLQASDIKR 437 Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 ++D ++R++ KFSR++ + P + D + S + Sbjct: 438 VVDTVINRDDRDKFSRLVKKSEIRENEYNLNIPRYVDSSEDAENWDLHATMLGGIPNSEI 497 Query: 511 HQ 512 Q Sbjct: 498 DQ 499 >gi|19881311|gb|AAM00901.1|AF486570_2 HsdM [Campylobacter jejuni subsp. jejuni ATCC 33560] gi|19698527|gb|AAL93191.1| type I restriction enzyme M protein [Campylobacter jejuni] Length = 509 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 107/532 (20%), Positives = 194/532 (36%), Gaps = 80/532 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 L IWK A DL G DF +L F + E ++ V + + + D Sbjct: 8 EELHKTIWKIANDLRGSVDGWDFKSYVLGFLFYYFIC---ENLKNYVLKSFEQDYENLSD 64 Query: 69 L------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDN------ 110 ++ + G F+ + S + NL ++ S N Sbjct: 65 EMAENGRDTIINAKG--FFIKPSHLFSNIFKNAKLENLNEKLSVVFKEIESSANGSESEK 122 Query: 111 -AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 K +F+D D S E+ + KI + S ++LH + + YE L+ + Sbjct: 123 SFKGLFDDLDLYSNKLGADNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMY 182 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 S + +F TP++V L + L + K +YDP CG+G L Sbjct: 183 ASNAGKSGGEFFTPQEVSKLLVEITLYNNAKPNK--------VYDPACGSGSLLLQYKKS 234 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285 + GQE+ T+ + M + + +I G TL Sbjct: 235 LKSDPKKG-------YFGQEINITTYNLARMNMFLHDVN-----YTRFDIAHGDTLINPS 282 Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341 + F +SNPP+ KWE + RF L S + F+MH Sbjct: 283 ENHKELEPFDAIVSNPPYSTKWEG-----KDNALLINDERFNKAGVLAPTSKADLAFVMH 337 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L G AAIV ++ G A E +IR++++E + ++ +++L +LFF T Sbjct: 338 SLSWLSEK----GSAAIVCFPGVMYRGGA---ERDIRKYMIEENFVDCVISLAPNLFFGT 390 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +IA + +L KT++ INA + + + N + +++ + IL +Y R+ Sbjct: 391 SIAVCILVLRKNKTDKNT---LFINANEEFIKVTN----KNMLSKENLENILKLYKDRKE 443 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + + + + + L + + + L++ Sbjct: 444 VPH---------LTKLVSIEEIAKNDYNLSVSSYVEAKDTREIIDIKALNKE 486 >gi|313113033|ref|ZP_07798671.1| type I restriction-modification system, M subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310624647|gb|EFQ07964.1| type I restriction-modification system, M subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 848 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 110/592 (18%), Positives = 209/592 (35%), Gaps = 67/592 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63 + LA+ IW++A + + ++ IL F + L E Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFMFYKFLSDKEVKWLKENDWTDEYLPDLT 61 Query: 64 GSNIDLESFVKVAGYSFYNTSEY--SLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117 + + V+ F + + GS +++ + +FS + K +F+ Sbjct: 62 EDDAETLDTVRKNVGYFIAYENLFSTWISKGSDFKADDVTVALQAFSRLIDPHHKKVFDG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I + V+ IYE+LI F + Sbjct: 122 VFATLQTGLSKLGESSGARTKAIRDLIYLIKDIPMDGK-QDYDVLGFIYEYLISNFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ + +YDPT G+G L + A Sbjct: 181 GKKAGEFYTPHEVSLLMSEIVAYHLKDREEIK------IYDPTSGSGSLLINIGQCAARY 234 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + + + QEL+ T+ + +++R + D + G TL +D Sbjct: 235 MGNGN---NIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLEEDWPYFE 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLF 338 + +SNPP+ + W + RF GL F Sbjct: 287 ENDPVNTYDPLFVDAVVSNPPYSQAW--------NPNDKENNPRFSDYGLAPKGKADYAF 338 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L+H + G IVL LF G E IR+ L++++ I+AI+ LP ++F Sbjct: 339 LLHDLYHIRND----GIVTIVLPHGVLFRGGE---EGTIRKNLIDHNNIDAIIGLPANIF 391 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 F T I T + +L K + V +I+A+ + K + ++I+D Y Sbjct: 392 FGTGIPTIIMVLRKNKKDS---DVLIIDASKGFEKD----GKNNKLRACDIKRIVDAYKE 444 Query: 459 RENG--KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 R KF+R + + P + + + L Sbjct: 445 RPEKIEKFARRVSRAEIIQNDYNLNIPRYVDSSEKAESWDIYASMFGGIPEAELQDLSAY 504 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 P ++ E++ + ++ + + L +F AF NAFG D Sbjct: 505 WTAFPHLKAALFSPDNEAYCRLNVANLKNAVLSHPDVVAFKTAFQNAFGDFD 556 >gi|48477150|ref|YP_022856.1| type I restriction-modification system methylation subunit [Picrophilus torridus DSM 9790] gi|48429798|gb|AAT42663.1| type I restriction-modification system methylation subunit [Picrophilus torridus DSM 9790] Length = 576 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 96/472 (20%), Positives = 188/472 (39%), Gaps = 52/472 (11%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-- 59 T + + L + + K A+ + + IL L+R+ E + + Sbjct: 82 TNNKITRSDLESMLKKAADLIRTRVD---YK-YILILLFLKRISDKWEEEYNKALNELVD 137 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 A + ++ + + +N ++TL L++ IA + + K Sbjct: 138 NGLNESEAKEEAKDEIYHEFNLPEDALWNNIRKDVNTL-PEKLARALKT-IAEMNPDLKN 195 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + ++ DF + E + +L ++ + FS EL + V ++ + YE ++R F + ++ Sbjct: 196 VIDNIDFMTFTTNSENSQILRQLVELFSEQEL--NNVSPDILGDAYEWILRYFLPQKAKE 253 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 + TPR+V+ L LL P +YDP CGT G L A +V D Sbjct: 254 -GEIYTPREVIKLLMNLL----------DPKPGDYIYDPACGTAGMLITAYYYVKDKYGK 302 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RF 292 + +GQE +AV + I ++ N+ G TL + +F Sbjct: 303 DYANKLF-LYGQEANTTIYAVSKMNLYIHGID-------DTNLSSGDTLLHPKNIDENKF 354 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 ++NPP+ + + E+ N R+ G S ++ H+ + Sbjct: 355 DIVVANPPWNQDGYDENVLKTGEYLN----RYKYGFTNSSSADWAWIQHMLYTSK----- 405 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 + I+L + LF E IR +++ND +E+++ LP +F+ T + + IL+ Sbjct: 406 -SKVGIILDTGSLFRSGK---ELAIRSKIIDNDFVESVILLPEKIFYNTGSPSVIIILNK 461 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K + R K+ I+A+ + +K ++DD +I + Y +N Sbjct: 462 NK--KIRNKILFIDASKEFIKHPEI-RKLNTLSDDNINKITEAYKQFKNIDN 510 >gi|310659274|ref|YP_003936995.1| type I restriction modification system protein hsdmi [Clostridium sticklandii DSM 519] gi|308826052|emb|CBH22090.1| Type I restriction modification system protein HsdMI [Clostridium sticklandii] Length = 515 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 110/500 (22%), Positives = 189/500 (37%), Gaps = 69/500 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT A L + IWK A D+ G DF + +L R + A E Sbjct: 1 MT-SAAQRAELQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSKYIEAGDESIN 59 Query: 61 -----------AFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGST--NTRNNLESYIA 105 I + + F N ++ + +L + + +ES Sbjct: 60 YAELPDDIITSEIKDDAIKTKGYFIYPSQLFENIAKTANTNESLNTDLAAIFSAIESSAN 119 Query: 106 SFSD--NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157 + + K +F DF +T RL +K L + K +G++ + + Sbjct: 120 GYPSELDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVAGLKFGEFEDNHIDLFGD 177 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE LI + + + +F TP+ V +L L + ++ K +YDP G+G Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQSVSNLIAKLAIHGQSSINK--------IYDPAAGSG 229 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A + +GQE+ T+ + M + + D +I Sbjct: 230 SLLLQAKKQFDEHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDK-----FHIA 278 Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 G+TL + + F +SNPP+ W D RF P L S Sbjct: 279 LGNTLLDPHYGDDKPFDAIVSNPPYSVNWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H + L GRAAIV + G A E +IR++L++N+ +E + +L Sbjct: 334 DFAFVLHSLSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETVTSLA 386 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQI 452 +LFF T+IA + +LS KT+ K Q I+A+ D + N ++ + +I Sbjct: 387 PNLFFGTSIAVNILVLSKHKTD---NKTQFIDASGADFYKKETN----NNVLTEKHIEEI 439 Query: 453 LDIYVSRENGKFSRMLDYRT 472 + I+ ++E+ Sbjct: 440 MTIFDTKEDIPHVAKCIDYE 459 >gi|312970037|ref|ZP_07784219.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70] gi|310337535|gb|EFQ02646.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70] Length = 497 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 102/500 (20%), Positives = 176/500 (35%), Gaps = 81/500 (16%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + E R + G ++ FY E S + ++ Sbjct: 1 MFLKFISDKFEARRKKMIA----DGQADFLEMEVFYQQDNIFYLPEEARWSFIKQNAKQD 56 Query: 99 NLE-------SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 ++ S I + K D FS + L + IE Sbjct: 57 DIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL---ETKKLASLIDTIDNIETLAHETD 113 Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 + ++ +YE+ + +F + +G +F TP+ VV L T +L Sbjct: 114 VETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVVTLLTEML-----------EPF 162 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +YDP CG+ G ++ V + +GQEL T+ + + IR L Sbjct: 163 QGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIALYGQELTATTYKLAKMNLAIRGLS 219 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF- 324 ++ + T D + Y L+NPPF E + + RF Sbjct: 220 ANLGE------RPADTFFSDQHPDLKADYILANPPFNL------KDWRNEAELTKDPRFA 267 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G +P + + +++H+ +KL + G A VL++ + SGE EIR ++EN Sbjct: 268 GYRMPPTGNANYGWILHMLSKL----SANGTAGFVLANGSM--SSNTSGEGEIRAQMIEN 321 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-------RGKVQLINATDLWTSIRNE 437 DLI+ ++ALP LF+ T I LW ++ K + +G+ I+A +L T I Sbjct: 322 DLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRT 381 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 K + + I D Y + R L + L + Sbjct: 382 TK---ELTAEDIATIADTYHA-----------------WRSTPEE-LAARIARGDSKLEK 420 Query: 498 LEADITWRKLSPLHQSFWLD 517 E + K++ L D Sbjct: 421 YEDQAGFCKVATLQDIKDND 440 >gi|297617310|ref|YP_003702469.1| Site-specific DNA-methyltransferase (adenine-specific) [Syntrophothermus lipocalidus DSM 12680] gi|297145147|gb|ADI01904.1| Site-specific DNA-methyltransferase (adenine-specific) [Syntrophothermus lipocalidus DSM 12680] Length = 523 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 101/565 (17%), Positives = 205/565 (36%), Gaps = 78/565 (13%) Query: 9 ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA----- 61 + +W A+ L K +++ +L LR + + +K A Sbjct: 6 NEIEKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADHKFSMAEKELAKKAKAGSRRV 65 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDF 118 G ++ + + + Y Y L N + I + +++ K + Sbjct: 66 IGKADYQARGVMYLPEQARY---SYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPK- 121 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 T RL L + K FS I P V V N+YE+ + F + +F Sbjct: 122 ----TYTRL-DNDTLIALLKTFSEI---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEFY 173 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L ++ + DP CG+GG + V + + Sbjct: 174 TPTSLVKLIVEVI-----------EPYRGRILDPACGSGGMFVQSARFVQNHKKN--PSS 220 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLS 297 + +GQE ET +C + + L D I+Q +T +++ RF + ++ Sbjct: 221 EISIYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCIGRFDFVMA 272 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF + K + R+ GLP + + + +++ + L N GRA Sbjct: 273 NPPFNVDG-------VDKEKIKDDPRYPFGLPTVDNANYIWIQEFYSAL----NDTGRAG 321 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 V+++S A E EIR+ L+++ +++ ++ + + F+ + LW K + Sbjct: 322 FVMANSA---SDARGSELEIRKKLIQDRVVDVMITIGPNFFYTVTLPCTLWFFDKGKRQT 378 Query: 418 RRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTF- 473 RG KV I+A +++ + ++ + I+ +Y E S + F Sbjct: 379 ERGNKVLFIDARNIYRQVDRAHREFTPEQIEFIANIVRLYRGEPVETVNGSDEMLEDKFP 438 Query: 474 --------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 G ++ + + L+ + + + L+ + + Sbjct: 439 EGKYVDVPGLCKVATIEEIEAQGWSLNPGRYVGVAQ-------KEEEDYDFTERLQELNE 491 Query: 525 QIYPYGWAESFVKESIKSNEAKTLK 549 ++ + ++E I+ N K L+ Sbjct: 492 ELEQLNAEAAELEERIRENVGKLLE 516 >gi|304315082|ref|YP_003850229.1| type I restriction-modification enzyme, subunit M [Methanothermobacter marburgensis str. Marburg] gi|302588541|gb|ADL58916.1| predicted type I restriction-modification enzyme, subunit M [Methanothermobacter marburgensis str. Marburg] Length = 590 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 114/521 (21%), Positives = 204/521 (39%), Gaps = 59/521 (11%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 A + + A+ + + IL ++++ E A + Sbjct: 93 ADIERILKGAADLIRTRVD---YK-FILVLLFMKQMSDKWMMEYQKAYE--DAIKEYGLS 146 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIFEDF 118 E A S Y+ + L N R ++E+ +A + K + + F Sbjct: 147 EEEARLEARNSAYHDLDIKEDYL-WDNIRKDVENLPIKFAGALKNLAELNPAFKDVVDAF 205 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 DF E +L ++ + FS +L V ++ + YE ++R F ++ + Sbjct: 206 DFVEFTQSQENREILRQLVELFSEKKLT--NVDPDILGDAYEWILRYFAPTKAKE-GEVY 262 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR+V+ L +L P ++YDP + G L + +V + + Sbjct: 263 TPREVIRLLVEIL----------DPKPGESVYDPASASNGMLIISHKYVKETYGEAE--- 309 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294 L +GQE+ +T A+ M I ++ +I G TL F RF Sbjct: 310 RLFLYGQEVNRKTMALGSMNMYIHDIK-------DHHIAHGDTLLYPKFKESDGIMRFDV 362 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ + + + ++ RF G ++ H+ + G Sbjct: 363 VIANPPWNQDGYGEDTLKKGDYWRE---RFRYGFVNKQSADWAWIQHMIASAKDD----G 415 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 R +V+ + LF G E IR +LE+DLIEA++ LP LF+ T + IL+ K Sbjct: 416 RIGVVIDNGCLFRGGR---EKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNKDK 472 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 EERRGKV INA + + +K I++D +IL+ Y ++ FSR++D Sbjct: 473 DEERRGKVLFINAGEEYEKHPEV-RKLNILSDGNIERILEAYREFQDDDGFSRVVDLDEI 531 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + PL + + L ++ W +LS + + Sbjct: 532 RENDYNLNVPL---YAFPEEELEDIDVAGEWMRLSEIEEEL 569 >gi|296132420|ref|YP_003639667.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola sp. JR] gi|296030998|gb|ADG81766.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola potens JR] Length = 518 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 102/567 (17%), Positives = 205/567 (36%), Gaps = 79/567 (13%) Query: 9 ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL------ 60 + +W A+ L K +++ +L LR + + EK Sbjct: 6 NEIEKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADQRFSAAEKELVEKAKVSGSRR 65 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFED 117 A G ++ + + + Y Y L N + I + +++ K + Sbjct: 66 AIGKADYQARGVMYLPEQAKY---SYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPK 122 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 T RL L + K FS I P V V N+YE+ + F + +F Sbjct: 123 -----TYTRL-DNDTLIALLKIFSEI---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEF 173 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V L ++ + DP CG+GG + V + + Sbjct: 174 YTPTSLVKLIVEVI-----------EPYKGRILDPACGSGGMFVQSARFVQNHKKN--PS 220 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCL 296 + +GQE ET +C + + L D I+Q +T +++ RF + + Sbjct: 221 SEISIYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCINRFDFVM 272 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF + K + R+ GLP + + +++ + L GRA Sbjct: 273 ANPPFNVDG-------VDKEKIKDDPRYPFGLPSNDNANYIWIQEFYSALNDK----GRA 321 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 V+++S A E EIR+ L+++ +++ ++A+ + F+ + LW K + Sbjct: 322 GFVMANSA---SDARGSELEIRKKLIQDKVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQ 378 Query: 417 ERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTF 473 RG KV I+A +++ + ++ + I+ +Y E S + F Sbjct: 379 TERGDKVLFIDARNIYRQVDRAHREFTPEQIEFIANIVRLYRGEPVETASGSEDMLKEHF 438 Query: 474 ---------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 G ++ + + L+ + +++ L+ + Sbjct: 439 PEGKYVDIPGLCKVTTIAEIEAQGWSLNPGRYVGVAQ-------KDEEDFDFMERLQELN 491 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKV 550 +++ + ++E I+ N + L V Sbjct: 492 EELERLNAEAAELEERIRENVDRILSV 518 >gi|229129743|ref|ZP_04258710.1| Type I restriction-modification system, M subunit [Bacillus cereus BDRD-Cer4] gi|228653659|gb|EEL09530.1| Type I restriction-modification system, M subunit [Bacillus cereus BDRD-Cer4] Length = 512 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 98/469 (20%), Positives = 188/469 (40%), Gaps = 72/469 (15%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70 +++ +L + L L E+Y + +I + Sbjct: 1 MDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYDTQEKQTQLYRESLADEDIKND 60 Query: 71 SFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLE 128 + Y+ +Y + L + +N + + + + +D F+ ++ Sbjct: 61 LIETLVDTLGYDIELDYLFNVLTNQAKQNTFQ--LNDLNKAFIDLSTKYDQFNGLFDDVD 118 Query: 129 -KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 K+ L ++ K + +++ V+ + YE LI +F SE + A + Sbjct: 119 LKSKKLGADDQQRNITITEVLKKLNDVDVL--GHNGDVIGDAYEFLIGQFASEAGKKAGE 176 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V + + + + +++DPT G+G + + N++ Sbjct: 177 FYTPHEVSVMMARIAAIGQED------KKLFSVFDPTMGSGSLMLNIQNYI-------NH 223 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY-- 294 P + HGQEL T+ + +++ ++ + R ++ G TL+KD T + + + Sbjct: 224 PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDTLNKDWPTDEPYTFDS 278 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L NPP+ KW D ++ R+G L S FL+H L+ G Sbjct: 279 VLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKDS----G 329 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 AIVL LF G A E IR+ LLE+ I+A++ +P +LFF T+I T + IL + Sbjct: 330 TMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGTSIPTTVIILKKNR 386 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 V I+A+ + GK + + + +I++ Y RE+ + Sbjct: 387 ATR---DVLFIDASKEFIK----GKNQNKLFKEHIDKIVETYKKREDVE 428 >gi|182679587|ref|YP_001833733.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635470|gb|ACB96244.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 814 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 101/471 (21%), Positives = 182/471 (38%), Gaps = 77/471 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + + + +W + + L G + + +L ++ + Sbjct: 1 MAVKKSEIYSSLWASCDALRGGMDASLYKDYVLVLLFVKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFDF 120 + G SF + L + + + IA ++ + K + + DF Sbjct: 45 YAGDPNGLIEVPKGGSF-----ADMVALKGNKDIGEQINMIIAKLAEANDLKGVIDVADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + +L L + F+ EL T D ++ + YE+L+R F +E + Sbjct: 100 NDP-DKLGSGKEMVDRLSSLVGIFNRPELDFRKNRTEGDDILGDAYEYLMRHFATESGKS 158 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP +V + + + +T+YDPTCG+G L A H Sbjct: 159 KGQFYTPAEVSRIMAKAIGMG------SARSAAQTIYDPTCGSGSLLLKA---------H 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 + P L +GQE + T A+ M++ + I + +TLS F Sbjct: 204 DEAPFDLTIYGQEKDVATRALAKMNMVLH-------DCPTAEIWRDNTLSAPHFVNNDGT 256 Query: 290 -KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 K F + ++NPPF K W D E K RF G+P +G +L+H+ L+ Sbjct: 257 LKTFDFVVANPPFSDKAWGTGLDPAEDRFK-----RFEDGVPPAKNGDFAYLLHVVASLK 311 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ AI++ LF G A +G IR ++ +I+ I+ LP +LF+ T I + Sbjct: 312 ST----GKGAIIMPHGVLFRGNAEAG---IREKIIRKGIIKGIIGLPANLFYGTGIPACI 364 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 +L R G + +I+A+ + +G K R + +I+D + Sbjct: 365 VVLDKENAHARTG-IFMIDASKGFV---KDGNKNR-LRAQDIHKIVDTFTK 410 >gi|225873158|ref|YP_002754617.1| putative type I restriction-modification system, M subunit [Acidobacterium capsulatum ATCC 51196] gi|225793577|gb|ACO33667.1| putative type I restriction-modification system, M subunit [Acidobacterium capsulatum ATCC 51196] Length = 539 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 101/465 (21%), Positives = 175/465 (37%), Gaps = 44/465 (9%) Query: 2 TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-K 58 +E +L +W A+ D K +++ + IL LR R+ + + Sbjct: 7 SEKDAGTTTLEKRLWDAADQFRANSDLKASEYSQPILGLIFLRFAGVRFAAQRARLEKSA 66 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + GS +D + G Y + L S ++ + + + I + Sbjct: 67 ASSRRGSRVDDPAAYHAEG-VLYLPPDARFDHLLSLPEAADIGKAVN---EAMREIEKHN 122 Query: 119 D-FSSTIARLEK---AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 D S + R + LL +I K S I P T+ IYE+ + F +G Sbjct: 123 DQLSGVLPRSYNRFTSKLLSEILKMISEI---PATLDYDAFGRIYEYFLGEFARTEGQGG 179 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L T ++ + DP CG+GG + VA+ H Sbjct: 180 GEFYTPSAIVRLLTEVI-----------EPYHGRILDPACGSGGMFVSSARFVAEH--KH 226 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293 L HG E ET +C + + LE + + N T D +F Sbjct: 227 NPSAELSIHGVEKTDETGRLCRMNLAVHGLEGTIKHGGNVN-----TYYDDPHAATGKFD 281 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + L+NPPF + + G RF GLP++ + + L++ + L Sbjct: 282 FVLANPPFNVDAVDKERLKDA---VGPNRRFPFGLPRVDNANYLWIQLFYSALNDK---- 334 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+++S A S E EIRR L+E ++ +VA+ ++F+ + LW Sbjct: 335 GRAGFVMANSA---SDARSSEQEIRRELIEAGAVDVMVAVGPNMFYTVTLPCTLWFFDRG 391 Query: 414 KTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 K R V ++A ++ I ++ ++ +Y Sbjct: 392 KAATPRADTVLFLDARHIYRQIDRAHREWTPAQTGFLANLVRLYR 436 >gi|83815070|ref|YP_445227.1| putative type i restriction enzyme hindviip m protein [Salinibacter ruber DSM 13855] gi|83756464|gb|ABC44577.1| putative type i restriction enzyme hindviip m protein [Salinibacter ruber DSM 13855] Length = 522 Score = 264 bits (674), Expect = 5e-68, Method: Composition-based stats. Identities = 108/540 (20%), Positives = 191/540 (35%), Gaps = 64/540 (11%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA----FGGS 65 + + +W+ A DL G ++ +LP LR L E R + EK + Sbjct: 17 EIEDELWEAAVDLRGTIAPANYKNYVLPLLFLRYLSLRYEERREELEEKAEDPDSYYVEE 76 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 ++ + G +F E L ++++ + + + D + Sbjct: 77 DLREVDEYRQEG-AFLIPEEARWDYLVEHAQDDDIKVKVDRAMELLQQ--RYDDLEGVLP 133 Query: 126 RL-EKAGL----LYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + L L + FS I V+ +YE+ I F +F T Sbjct: 134 PMYAGSNLTQENLANLINLFSRDIFTGQGKQQADVLGRVYEYFITNFADTEGSKGGEFFT 193 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR VV A+L D ++DP CG+GG A D Sbjct: 194 PRSVVQALVAMLEPED----------GSKIFDPACGSGGMFVQAAEFTDD-------KES 236 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 L +GQE + +C +L+ L+ D + G +L D G + Y ++NP Sbjct: 237 LSFYGQESVDQNLRLCKMNLLMHDLQGDL--------ESGDSLLNDKHEGLKADYVIANP 288 Query: 300 PFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PF W D+ + R P S+ + +++MH + L GG A Sbjct: 289 PFNIRSWGADEIPGDDPRLQVGDRRLQ---PTDSNANYMWMMHFLHHL----EDGGTAGY 341 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK---- 414 V+++ + E +R+ L++ ++ IV LP LFF T I LW LS + Sbjct: 342 VMANGSMTTSLTN--EEPVRKALVDERFVDCIVQLPDKLFFGTGIPACLWFLSRNRDGSN 399 Query: 415 -TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------ENGKFS 465 ER ++ ++ D+ +R++ DD+ ++ Y + E FS Sbjct: 400 GERERSDEILFLDGRDMGELPERA---KRVLTDDEIGRLETAYRNFRMPDEKVEEEPGFS 456 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + K+ L + F D E + Q + L+ +++ Sbjct: 457 GVASLEEVRSNDYKLTPGLYVGFEDDDGDRVPFEVKMPQLVDELEDQFAESERLQSQIEK 516 >gi|21228842|ref|NP_634764.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] gi|20907365|gb|AAM32436.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] Length = 508 Score = 262 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 95/512 (18%), Positives = 183/512 (35%), Gaps = 64/512 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REK 58 G+ +W A +L K +++ +L LR E + E Sbjct: 1 MAGNNNETEKRLWDVANELRANSGLKASEYSVPVLGLIFLRYAEFKFAQAEQELKLELEN 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNA 111 + ++ A Y + S L S NT + I + + Sbjct: 61 NSSSRRRKNEISKVDYQAKGVLYLPEKARYSYLLDLPESENTGKAVNEAMEAIEAENPEL 120 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 I + LL + K F P + IYE+ + +F Sbjct: 121 TDILPKNY------TSFENDLLIALLKAF----KLPTDIQGDAFGKIYEYFLGKFAMAEG 170 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +V L ++ + DP CG+GG + + V + Sbjct: 171 QKGGEFFTPISLVKLIVEII-----------EPYHGKILDPACGSGGMFVQSAHFVENH- 218 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-K 290 H K + +GQE +T +C + + L D I++G+T +++ Sbjct: 219 -HRKASSEISVYGQEKVADTVRLCKMNLAVHGLSGD--------IKEGNTYYENIHNSVD 269 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + ++NPPF K + + R G P + + L++ H + L Sbjct: 270 AFDFVMANPPFNVKKVDFEKVKGDK-------RLPLGTPSTDNANYLWIQHFWSALNEK- 321 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GRA V+++S A E+EIR+ L+E++ ++ +V++ ++ F+ + LW L Sbjct: 322 ---GRAGFVMANSA---SDARGTEAEIRKQLIESNAVDIMVSIGSNFFYTVTLPCALWFL 375 Query: 411 SNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 K +R+ K+ I+A +++T + R +Q +I I S + S + Sbjct: 376 DKSKASTDRKDKILFIDAREIFTQVDRA---HREFTAEQIEKIAGIVRSYREEEGSEPYE 432 Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEA 500 G ++ + + L+ + Sbjct: 433 DV-KGLCKVATLDEVREQGYSLNPGRYVGVAE 463 >gi|313669544|ref|YP_004049969.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994] gi|313156741|gb|ADR35416.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994] Length = 529 Score = 262 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 92/487 (18%), Positives = 182/487 (37%), Gaps = 55/487 (11%) Query: 6 GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + +L +W A++L + +++ + +L LR E + A+ E Sbjct: 4 KNIEALEKRLWSAADELRANSNLTASEYSRPVLGLIFLRYAEYRYLIAKEAI-ESTQTSR 62 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKAIFE 116 D+++ ++ G Y L + + + + ++ + Sbjct: 63 RRGTDIKTAIQAEGAM-YVPDVALFDNLLKLPDGADIGRAINDAMKALEAENEAIRDTLP 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + KNF+GI + V IYE+ + F +G + Sbjct: 122 K------TYTKFDNAILITLLKNFAGIRF---DIGTDVFGRIYEYFLTEFAKSEGQGGGE 172 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L T ++ ++DP CG+GG + + VA+ + Sbjct: 173 FFTPAHLVRLITEII-----------EPYHGKVFDPACGSGGMFVSSASFVAEHNRNASS 221 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYC 295 GQE +T + + + L+ D I++G++ +D+ +F + Sbjct: 222 EL--SIFGQEKTGDTVRIAKLNLAVHGLQGD--------IKEGNSYYEDIHQCAGQFDFV 271 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPF ++KE + RF G+P + +G+ L++ L N GR Sbjct: 272 MANPPFNVNN------IQKERIADDKARFPFGMPNVDNGNYLWIQLFYASL----NDTGR 321 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A V+++S A E EIRR L + ++ +VA+ ++ F+ + LW L K Sbjct: 322 AGFVMANSA---ADARGSEMEIRRQLTLSGGVDVMVAISSNFFYTVTLPCTLWFLDKGKP 378 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 + R+ KV I+A ++ + + + I+ +Y + Sbjct: 379 QSRKDKVLFIDARHIFKQVTRSVRDYSSEQLNFIADIVRLYRGEATDDTYKTHHEDERND 438 Query: 476 RRIKVLR 482 V R Sbjct: 439 GEYTVER 445 >gi|121534614|ref|ZP_01666436.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1] gi|121306866|gb|EAX47786.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1] Length = 518 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 101/563 (17%), Positives = 206/563 (36%), Gaps = 75/563 (13%) Query: 9 ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +W A+ L K +++ +L LR + + EK + G Sbjct: 6 NEIEKKLWTAADQLRANSKLKASEYSVPVLGLIFLRFADQRFSMAEKELAEKARSAGSRR 65 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKAIFEDFD 119 ++ + G Y + S L N + I + +++ K + Sbjct: 66 AIGKADYQARG-VMYLPEQARYSYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPK-- 122 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 T RL L + K FS + P V V N+YE+ + F + +F T Sbjct: 123 ---TYTRL-DNDTLIALLKIFSEV---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEFYT 175 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P +V L ++ + DP CG+GG + V + + Sbjct: 176 PTSLVKLIVEVI-----------EPYQGRILDPACGSGGMFVQSARFVQNHKKN--PSSE 222 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSN 298 + +GQE ET +C + + L D I+Q +T +++ RF + ++N Sbjct: 223 ISIYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCLNRFDFVMAN 274 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + K + R+ GLP I + + +++ + L GRA Sbjct: 275 PPFNVDG-------VDKEKIKDDPRYPFGLPTIDNANYIWIQEFYSALNDK----GRAGF 323 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V+++S A E EIR+ L+++ +++ ++A+ + F+ + LW K + Sbjct: 324 VMANSA---SDARGSELEIRKKLIQDRVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQTE 380 Query: 419 RG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTF-- 473 RG KV I+A +++ + ++ + I+ +Y + E S + F Sbjct: 381 RGDKVLFIDARNIYRQVDRAHREFTPEQIEFIANIVRLYRGQPVETFNGSEEMLKEKFPE 440 Query: 474 -------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 G ++ + + L+ + +++ L+ + ++ Sbjct: 441 GKYTDIPGLCKVATIEDIEAQGWSLNPGRYVGVAQ-------KDEEDFDFMERLQELNEE 493 Query: 526 IYPYGWAESFVKESIKSNEAKTL 548 + + ++E I+ N + L Sbjct: 494 LERLNAEAAELEERIRENVRQLL 516 >gi|73670137|ref|YP_306152.1| type I restriction-modification system specificity subunit [Methanosarcina barkeri str. Fusaro] gi|72397299|gb|AAZ71572.1| type I restriction-modification system specificity subunit [Methanosarcina barkeri str. Fusaro] Length = 508 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 102/550 (18%), Positives = 203/550 (36%), Gaps = 61/550 (11%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 G+ N +W A +L K +++ +L LR E ++ + Sbjct: 1 MAGNNNETENRLWDVANELRANSGLKASEYSVPVLGLIFLRYAEFKFAKAEKELKLELEN 60 Query: 62 FGGSNIDLESFVKV---AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 S + K+ A Y + S L + N+ + + +A E+ Sbjct: 61 ESSSRRRKKEISKIDFQAKGVLYLPKKARYSYLLNLPESENIGKAVNDAMEAIEA--ENP 118 Query: 119 DFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + T+ + + LL + K F P + IYE+ + +F + Sbjct: 119 ELTDTLPKNYTSFENDLLVALLKAF----KLPPEIKGDAFGKIYEYFLGKFAMAEGQKGG 174 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V L ++ + DP CG+GG + + V H + Sbjct: 175 EFFTPTSLVRLIVEII-----------EPYHGRILDPACGSGGMFVQSAHFVE--NQHKE 221 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHY 294 + +GQE +T +C + + L D I++G+T +D+ F + Sbjct: 222 ASSEISIYGQEKVADTVRLCKMNLAVHGLSGD--------IKEGNTYYEDIHNSVDAFDF 273 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPF K + + R G P + + L++ H + L G Sbjct: 274 VMANPPFNVKKVDFEKVKGDK-------RVPLGTPSTDNANYLWIQHFWSTLNEK----G 322 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RA V+++S A E+EIR+ L+E + ++ +V++ ++ F+ + LW L K Sbjct: 323 RAGFVMANSA---SDARGTEAEIRKQLIEGNAVDVMVSIGSNFFYTVTLPCTLWFLDKGK 379 Query: 415 TE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 R+ K+ I+A +++T + R +Q ++ I S + S + Sbjct: 380 ARTSRKDKILFIDAREIFTQVDRA---HREFTGEQIEKLAGIVRSYREKEGSEPYEDV-K 435 Query: 474 GYRRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIY 527 G ++ + + L+ +E D + +L L++ L+ + Sbjct: 436 GLCKVATLDEVREQGYSLNPGRYVGVAEAVEEDFDFTERLQELNEELEGLNLEARELEEQ 495 Query: 528 PYGWAESFVK 537 E V+ Sbjct: 496 ISENIEKLVR 505 >gi|325997725|gb|ADZ49933.1| Type I restriction-modification system DNA-methyltransferase subunit M [Helicobacter pylori 2017] Length = 495 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 103/447 (23%), Positives = 170/447 (38%), Gaps = 60/447 (13%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56 + L N IWK A +L G DF + +L R + + + Sbjct: 64 NHASLERNELHNTIWKVANELRGSVDGWDFKQYVLGVLFYRYISENIARYHNEYMRNNNF 123 Query: 57 -----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105 E+ S I+ + F F N + + + T N+ + I Sbjct: 124 DPSFDYASLSDEEAEIERKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFTEIE 183 Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155 S +N K +F D D +S + + L KI + G++L V Sbjct: 184 KSSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVF 243 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE+L+ + S + ++ TP++V L + L + + K +YDP CG Sbjct: 244 GDAYEYLMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCG 295 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + D GQE+ T+ +C M + + + Sbjct: 296 SGSLLLQFSKVLGDKNVLKG------YFGQEINLTTYNLCHINMFLHDIN-----YSKFH 344 Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G TL + F +SNPP+ KW D + + RF L + Sbjct: 345 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMN-----DERFSKAGALAPKN 399 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F MH+ + L G AAIV L+ G A E +IR +L++ + I+ ++A Sbjct: 400 AADLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIA 452 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERR 419 LP +LFF TNIAT + +L K ++ Sbjct: 453 LPENLFFGTNIATCILVLKRNKKDDTT 479 >gi|298528585|ref|ZP_07015989.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1] gi|298512237|gb|EFI36139.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1] Length = 516 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 95/468 (20%), Positives = 178/468 (38%), Gaps = 52/468 (11%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + +W A++L K +++ +L LR + A ++ Sbjct: 1 MNRNGNQVEARLWAAADELRANSKLKPSEYSVPVLGLVFLRYADHKF----KAAAKELEC 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 GG + A Y + S L +NL + I +A E+ D Sbjct: 57 SGGGRRKIGPADYHARGVVYLPEKARFSYLIQLPEGSNLGAAINDAMRAIEA--ENTDLR 114 Query: 122 STIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + LL ++ K + + P + IYE+ + F + +F Sbjct: 115 EVLPKTYNRFENYLLKELLKTMNSV---PMDIEGDAFGKIYEYFLGNFARAEGQKGGEFF 171 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L ++ +YDP CG+GG + + V + + Sbjct: 172 TPTAIVKLIVGII-----------EPYHGRIYDPACGSGGMFVQSAHFVEEHRKNPGSEL 220 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLS 297 +GQE ET + + + L D I+QG+ +DL K +F Y ++ Sbjct: 221 --SIYGQEKVAETVRLGKMNLAVHGLGGD--------IRQGNAYYEDLHNSKAKFEYVMA 270 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF + + + RF GLPK + + L++ + L GRA Sbjct: 271 NPPFNVD-------RVDKDRLKDDPRFPFGLPKPDNANFLWIQMFYSALNDK----GRAG 319 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTE 416 V+++S A E +IR+ L+E++ ++ +VA+ ++ F+ + LW L +K Sbjct: 320 FVMANSA---SDARGSELDIRKQLIESNSVDVMVAVGSNFFYTVTLPCTLWFLDRGKKNT 376 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 +R KV I+A ++ I + + I +Y + E + Sbjct: 377 DRADKVLFIDARHIYRQIDRAHRDWTPAQIEFLANIARLYRN-EEPEN 423 >gi|158522247|ref|YP_001530117.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158511073|gb|ABW68040.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 528 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 105/577 (18%), Positives = 190/577 (32%), Gaps = 82/577 (14%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + +W A+ L K +++ +L LR + A ++ Sbjct: 1 MNHNGNNTEARLWDAADQLRANSKLKSSEYSVPVLGLVFLRYADHKF----QAAAKELEG 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAKAI 114 GG A Y S L N+ + I + + + K + Sbjct: 57 KGGGRRKTGPADYQAKGVLYLPKAARFSALIQMPEGANIGTAINNAMRAIEAENPDLKDV 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + LL ++ K + + P + IYE+ + F + Sbjct: 117 LPKTYNR------FENTLLKELLKTMNSV---PMDIEGDAFGRIYEYFLGNFARAEGQKG 167 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L ++ +YDP CG+GG + VA+ + Sbjct: 168 GEFFTPTAIVRLIVGII-----------EPFHGRIYDPACGSGGMFVQSARFVAEHKKNP 216 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293 +GQE ET + + + L D I++G+ +DL +F Sbjct: 217 GAEL--SVYGQEKVAETVRLGKMNLAVHGLSGD--------IREGNAYYEDLHRAVNKFD 266 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + + + RF GLP+ + + L++ + L G Sbjct: 267 FVMANPPFNVD-------RVDKDRLKDDPRFPFGLPRTDNANYLWIQIFYSALNKTGRSG 319 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 A A E +IRR L+E ++ +VA+ ++ F+ + LW Sbjct: 320 FVMAN-------SASDARGSELDIRRQLIEAQAVDVMVAVGSNFFYTVTLPCTLWFFDKG 372 Query: 414 KTE------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV- 457 K R V I+A L+ R + R Q I +Y Sbjct: 373 KRNAVPGSAAPQCGISRADTVLFIDARHLY---RQIDRAHRDWTPAQIEFLANIARLYRG 429 Query: 458 -SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF-- 514 EN S L FG + V P A+ + R + ++ Sbjct: 430 EQTENLHDSADLLAEHFGKKSKYVDVPGLCKVATIAEIEAQGWSLNPGRYVGVAARTEDD 489 Query: 515 --WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + + L+ M +++ ++E I N AK L+ Sbjct: 490 FDFKERLEEMNEELEILNAEARELEERIAENVAKLLE 526 >gi|108797003|ref|YP_637200.1| N-6 DNA methylase [Mycobacterium sp. MCS] gi|119866087|ref|YP_936039.1| N-6 DNA methylase [Mycobacterium sp. KMS] gi|108767422|gb|ABG06144.1| N-6 DNA methylase [Mycobacterium sp. MCS] gi|119692176|gb|ABL89249.1| N-6 DNA methylase [Mycobacterium sp. KMS] Length = 495 Score = 259 bits (663), Expect = 9e-67, Method: Composition-based stats. Identities = 91/465 (19%), Positives = 165/465 (35%), Gaps = 59/465 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T A + N +W A++L + +L L E E R V K A Sbjct: 22 KTTDLAKVRNTLWAAADELRANSKLTPVQYRNPVLGLVFLAYAENRFEAVRGEVESKASA 81 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYI---ASFSDNAKAI 114 + A Y E LS L + ++ I + + K I Sbjct: 82 RNPATPAD----YKAKSVLYVPEESRLSYLNDLPEGDDIGKAVDDAIKAIEAANPELKDI 137 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +LE++ L ++ + F+ P + IYE + F ++ +G Sbjct: 138 LPR-----GYQKLERS-TLIELLRLFA---PLPTQLEGDAFGFIYEDFLSNFAAQEGKGG 188 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP +V L +L ++DP CG+GG V Sbjct: 189 GEYFTPYSIVRLIVEIL-----------EPFHGRVFDPACGSGGMFVQCAKFVERHNESA 237 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293 G E +T + + + L D I+Q ++ +D F Sbjct: 238 NRKL--SIFGAEKTDDTVPLAKMNLALHGLSGD--------IRQANSYYEDPHKAVGAFD 287 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 Y ++NPPF K+ + RF G+PK + + L++ L Sbjct: 288 YVMANPPFNVD-------KVKKGQLAGDKRFPFGIPKPDNANYLWIQQFYAALGPK---- 336 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+++S G AG E EIR+ ++E+ +++ +VA+ ++ F+ + LW + Sbjct: 337 GRAGFVMANSA---GDAGHSEKEIRKQIIESGVVDVMVAISSNFFYTVTLPVTLWFMDKA 393 Query: 414 KTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 K +R V ++A + I + + ++ +Y Sbjct: 394 KAGTQREDAVLFLDARHTYRQIDRAHRDFTAEQIEFLANVVRLYR 438 >gi|325108024|ref|YP_004269092.1| Site-specific DNA-methyltransferase (adenine-specific) [Planctomyces brasiliensis DSM 5305] gi|324968292|gb|ADY59070.1| Site-specific DNA-methyltransferase (adenine-specific) [Planctomyces brasiliensis DSM 5305] Length = 524 Score = 258 bits (659), Expect = 3e-66, Method: Composition-based stats. Identities = 95/465 (20%), Positives = 180/465 (38%), Gaps = 59/465 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + + +W+ A++ D K +++ +L LR + + +K Sbjct: 1 MANNHSDTEKRLWEAADEFRANSDLKSSEYSVPVLGLIFLRYADYRF----TQAEKKLEG 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESY---IASFSDNAKAI 114 G + A Y SE S L + N ++ I + ++ K + Sbjct: 57 QGSGRRQIGKADYQAEGVMYLPSEARFSHLLALPEGENIGKHINEAMKAIEAENEVLKGV 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 T R+E +L + KNFS IE+ + IYE+ + F + Sbjct: 117 LPK-----TFNRIE-NTILVSLLKNFSQIEMDDEG---DKFGKIYEYFLGNFARAEGQKG 167 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L ++ ++DP+CG+GG + + + Sbjct: 168 GEFFTPTSLVKLIVEII-----------EPYHGRIFDPSCGSGGMFAQSADFIKAHNK-- 214 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293 K + +GQE ET +C+ M + L D I+ G++ +D+ + RF Sbjct: 215 KPADEISCYGQERVAETRQLCMMNMAVHALSGD--------IRLGNSYYEDMHESQGRFD 266 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF + + + RF G+P+ + + L++ + L N Sbjct: 267 FVMANPPFNVD-------KVDKDRLKDDPRFPFGMPRNDNANYLWIELFYSAL----NET 315 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+++S A E EIR+ LL + ++ +VA+ + F+ + LW Sbjct: 316 GRAGFVMANSA---ADARQSEQEIRKKLLRSHAVDVMVAIGPNFFYTVTLPCTLWFFDKG 372 Query: 414 KTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 K +R+ KV I+A + + +K + I+ +Y Sbjct: 373 KQNTDRKDKVLFIDARHTFRQVDRAHRKFSPKQIEFLANIVRLYR 417 >gi|332983357|ref|YP_004464798.1| N-6 DNA methylase [Mahella australiensis 50-1 BON] gi|332701035|gb|AEE97976.1| N-6 DNA methylase [Mahella australiensis 50-1 BON] Length = 894 Score = 258 bits (659), Expect = 3e-66, Method: Composition-based stats. Identities = 95/482 (19%), Positives = 184/482 (38%), Gaps = 66/482 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + ++ L G + + +L + + + ++ G++ Sbjct: 2 KKSELYPLLLESCNKLRGGVEPARYKDYVLVLLFFKYVSDRY---KGQPFAEFKISDGAS 58 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124 D +K G S + ++ I F ++ + D F++ Sbjct: 59 FDD--LIKAKGKS---------------DVGERVDKIIQKFLEDNKLQGALPDVSFNNP- 100 Query: 125 ARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDF 177 L L + F + D ++ + YE+ + +F E + F Sbjct: 101 DELGYGKELVDKVSGLIAVFQNPAIDFKNNRASGDDIIGDAYEYFMMKFAQESGKSKGQF 160 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V + L+ K+ P TLYDP G+G L A + + Sbjct: 161 YTPSEVSRIIARLIGIG---NIKQMPTKKWTLYDPAAGSGSLLIRAAD---EAPVDENGD 214 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRF 292 I+ GQE + T + +++ + I++G+TL FT K+F Sbjct: 215 SIVTIFGQEKDIATAGLARMNLILH-------HKGTGEIKKGNTLVSPAFTDDFGELKKF 267 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351 + + NPPF K D + + RF G G+P +G + +H+ L + Sbjct: 268 DFIVMNPPFSDKSWSD----GIKATEDKYKRFDGYGIPPEKNGDYAWFLHVLKSL----D 319 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A I++ LF G E IR +L I+ I++LP +LF+ T I + I+ Sbjct: 320 DNGKAGIIMPHGILFRGN---SEETIRIAILRKRYIKGIISLPANLFYGTGIPACIVIID 376 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470 + R + LI+A+ + + +G K R + + +I+ ++++E + +SR + Y Sbjct: 377 KE-NADTRDGIFLIDASRGF---KKDGNKNR-LREQDIEKIVRTFINQEEIEGYSRFVKY 431 Query: 471 RT 472 Sbjct: 432 SD 433 >gi|238018337|ref|ZP_04598763.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748] gi|237864808|gb|EEP66098.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748] Length = 914 Score = 257 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 99/511 (19%), Positives = 187/511 (36%), Gaps = 98/511 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + LA IW++A + + ++ IL F + L ++ + Sbjct: 2 NKQQLAAKIWESANKMRSKIEANEYKDYILGFMFYKFLS----------EKEVKYLKSTG 51 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--------NAKAI---F 115 E +V N S++ ++T N +Y FS + + + Sbjct: 52 WTDEYLPEV------NESDHEVATSVKKNIG-YFIAYENLFSTWINKGRDFSVQDVTVAL 104 Query: 116 EDFD----------FSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDR 153 F+ F L ++ + ++ I + Sbjct: 105 NAFNRNINSSHKSVFEGIFETLQTGLSKLGETDASRSKSISELIHLIKDIPMDGK-QDYD 163 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V+ +YE+LI +F + + A +F TP +V L + ++ + K +YDPT Sbjct: 164 VLGFVYEYLIEKFAANAGKKAGEFYTPHEVSLLMSDIVAEHLKDRNKIE------IYDPT 217 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G + + V+ + + QEL+ T+ + +++R +E+D Sbjct: 218 SGSGSLMINIGQSVSKYVTGENKIK---YYAQELKRNTYNLTRMNLVMRGIEADNIVT-- 272 Query: 274 KNIQQGSTLSKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + G TL +D + +SNPP+ + W+ + + Sbjct: 273 ---RNGDTLEEDWPYFDENDPLGTYQPLYVDAVISNPPYSQPWDPSDKETDSRYAE---- 325 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 GL FL+H + G IVL LF G E IR+ L+ Sbjct: 326 ---YGLAPKGKADYAFLLHDLYHIRPD----GIMNIVLPHGVLFRGNE---EGMIRKNLI 375 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E + I+AI+ LP ++F+ T+I T + +L K + V I+A+ + K Sbjct: 376 EKNKIDAIIGLPANIFYGTSIPTIIMVL---KQKRENTDVLFIDASKGFIKD----GKNN 428 Query: 443 IINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 + ++I+D ++REN KFSR++ Sbjct: 429 KLRSSDIKKIVDTVINRENIDKFSRVVTRDE 459 >gi|332288722|ref|YP_004419574.1| N-6 DNA Methylase [Gallibacterium anatis UMN179] gi|330431618|gb|AEC16677.1| N-6 DNA Methylase [Gallibacterium anatis UMN179] Length = 483 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 85/436 (19%), Positives = 152/436 (34%), Gaps = 77/436 (17%) Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-------------------TNTR 97 E+Y A ++ A F+ ++ L + N Sbjct: 18 EEYQAQLEEEMEERD-NYTAENIFWVPAQARWENLKNVVILRKGSELPWGGTFRGVANLI 76 Query: 98 NNLESYIASFSDNAKAIFED---FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--- 151 ++ + I + K I + FD L + FS + T Sbjct: 77 DDAFTAIEKENPKLKGIIQRISGFDVEEQ--------TLIGLVNLFSDTHFNQPTYNGEP 128 Query: 152 -----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ ++YE+ + F + + TP+ +V L +L Sbjct: 129 ISLAAKDILGHVYEYFLGEFALAEGKKGGQYFTPKSIVTLIVEMLQPYQG---------- 178 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP G+GGF + + + +GQE P T + M IR +E Sbjct: 179 -RIYDPAMGSGGFFVQTEKFIEAHQGNIN---QVSIYGQESNPTTWKLAAMNMAIRGIEF 234 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D + + + + K+ + ++NPPF K + R+ Sbjct: 235 DFGKSNA------DSFKQPQHIDKKMDFVMANPPFNMK-------DWWNESLQDDPRWQY 281 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 G+P + + +L H+ L GR ++L++ + GE EIR+ LLE DL Sbjct: 282 GIPPEGNANFAWLQHMLYHLSP----NGRMGLLLANGSM--SSQTGGEGEIRQRLLEADL 335 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 +E +VALP LF T I +W L+ K + +V I+A ++ R Sbjct: 336 VECMVALPGQLFTNTQIPACIWFLNKNKPRAK--EVLFIDAREIGYMKDRV---LRDFTT 390 Query: 447 DQRRQILDIYVSRENG 462 + +I D Y + + Sbjct: 391 EDIAKIADTYHAWQQN 406 >gi|126661487|ref|ZP_01732540.1| type I restriction-modification system specificity subunit [Cyanothece sp. CCY0110] gi|126617230|gb|EAZ88046.1| type I restriction-modification system specificity subunit [Cyanothece sp. CCY0110] Length = 515 Score = 255 bits (652), Expect = 2e-65, Method: Composition-based stats. Identities = 97/465 (20%), Positives = 188/465 (40%), Gaps = 56/465 (12%) Query: 4 FTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + L +W A++L + K +++ +L LR + T++ ++ Sbjct: 1 MPANTTDLEKRLWDAADELRANSRLKSSEYSVPVLGLIFLRYADYKF--TKAE--QELKQ 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESY---IASFSDNAKAI 114 ++ A Y S L + +T + I S ++ I Sbjct: 57 KSSRRREVSKADYQAKGVMYLPDVARFSYLVNLPESEDTGKAINEAMKGIESENEELSNI 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +++ + LL ++ K+F+ I++ D + IYE+ + +F + Sbjct: 117 LPQ-NYNRF-----ENSLLVELLKSFNKIDIDTD-LEGDAFGKIYEYFLGKFAMSEGQKG 169 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP VV L +L +YDP CG+GG + + V+ + Sbjct: 170 GEFFTPTSVVKLIVEIL-----------EPYHGRIYDPACGSGGMFVQSASFVSKHRKN- 217 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293 + +GQE ET +C + + L D I++G+T +D+ +F Sbjct: 218 -PNAEISIYGQERVTETVRLCKMNLAVHGLSGD--------IKEGNTYYEDIHKSINKFD 268 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPPF V+KE G+L G+P+ + + L++ + L N Sbjct: 269 FVMANPPFNVD------KVDKEKMKGDLRVDEFGMPRADNANYLWIHFFYSAL----NDN 318 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+++S A S E EIR+ L+E +++ ++A+ ++ F+ + LW L Sbjct: 319 GRAGFVMANSA---SDARSSELEIRQKLIETGVVDVMIAVGSNFFYTVTLPCTLWFLDKG 375 Query: 414 KTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 KT+ R KV I+A ++ I ++ + I+ +Y Sbjct: 376 KTDTTRKNKVLFIDARHIYQQIDRAHREFTPEQIEFISNIVRLYR 420 >gi|260655883|ref|ZP_05861352.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella anthropi E3_33 E1] gi|260629499|gb|EEX47693.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella anthropi E3_33 E1] Length = 854 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 93/496 (18%), Positives = 181/496 (36%), Gaps = 65/496 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLAF 62 + LA+ IW++A + + ++ IL F + L L+ T A ++Y+ Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSDKEVKYLKDT--AWTDEYIPS 59 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSL-------STLGSTNTRNNLESYIASFSDNAKAIF 115 + ++ E + + L ++ + + K +F Sbjct: 60 LTEDDAETVGTVQKDIGYFIAYENLFSTWIAKGKDFSADDVTTALPAFNRLINKSHKKVF 119 Query: 116 EDF--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + +++L + + + I + V+ IYE+LI F + Sbjct: 120 SGIFKTLETGLSKLGETSGARTKAIRDLLYLIKDIPMDGK-QDYDVLGFIYEYLISNFAA 178 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A +F TP +V L + ++ + +YDPT G+G L N Sbjct: 179 NAGKKAGEFYTPHEVSLLMSEIVAHHLKDRQEIK------IYDPTSGSGSLLI---NIGK 229 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286 + ++ + QEL+ T+ + +++R + D + TL D Sbjct: 230 CAARYIGSEDNILYYAQELKENTYNLTRMNLVMRGIIPDNITT-----RNADTLEDDWPY 284 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + +SNPP+ + W + + N G+ Sbjct: 285 FDDDDPTRTYNPLYVDAVVSNPPYSQAWNPVGKENDPRYSN-------FGIAPKGKADYA 337 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H ++ G IVL LF G E IRR L+E + I+A++ LP ++ Sbjct: 338 FLLHDLFHVKPD----GIMTIVLPHGVLFRGGE---EGTIRRNLIEGNYIDAVIGLPANI 390 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 FF T I T + +L V +++A+ + K ++ ++I+D+ Sbjct: 391 FFGTGIPTIIMVLKQPHGRADYTDVLIVDASKGFEK----AGKNNVLRACDIKKIVDVVT 446 Query: 458 SREN-GKFSRMLDYRT 472 SR + KFSR++ Sbjct: 447 SRTSVPKFSRVVSLEE 462 >gi|75909704|ref|YP_324000.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413] gi|75703429|gb|ABA23105.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413] Length = 694 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 111/579 (19%), Positives = 216/579 (37%), Gaps = 73/579 (12%) Query: 8 AASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 L +W++A+ L D K +++ ++ L+ + + ++++Y A G+ Sbjct: 6 LKQLEANLWQSADTLRANSDLKSSEYSTPVMGLIFLKFADNKYRQYAAEIQQEYEALKGT 65 Query: 66 N-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKAIFED 117 + + + FY + L + +++ I S+ K Sbjct: 66 RREKAIAEIAIEKCGFYLPDHARYNYLLNLPEEEDIAKAIKAAMVSIESYKPELKDTLPQ 125 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 ++ G+ ++ KNFS I P+ + IYE+ + F +G +F Sbjct: 126 DEYFRLTRT--DKGIPKQLLKNFSNI---PENATGDMFGQIYEYFLGNFALSEGQGGGEF 180 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--HHK 235 TPR VV L ++ T++DP CG+GG + + + + Sbjct: 181 FTPRSVVRLMVEIIEPHQG-----------TVFDPACGSGGMFVQSAQFIEEQRKKLNQS 229 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHY 294 L +GQE ET + + + L D ++Q +T +D F +F Y Sbjct: 230 AADDLFVYGQEKTLETVKLAKMNIAVNGLRGD--------VRQTNTYYEDPFGSFGKFDY 281 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------ISDGSMLFL 339 L+NPPF D + E RF G+P+ + + + L++ Sbjct: 282 VLANPPFNVD---DVNLSRVE----IDARFNTYGIPRNKTKGKKQEQGNETVPNANYLWI 334 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 A L+ GRAA+V+++S A E++IR+ L+E +LI ++ LP+++F+ Sbjct: 335 NLFATSLKPK----GRAALVMANSA---SDARHSEADIRQKLIEENLIYGMLTLPSNMFY 387 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVS 458 + LW KT+ K+ I+A +++T + R + +Q I I ++ Sbjct: 388 TVTLPATLWFFDRGKTD---DKILFIDARNIFTQVDRS---HREFSTEQISNIAIISHLR 441 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 R L F +K+ + + + L + K F Sbjct: 442 RGRSHRFIELINNYFQQGMVKLRENQAQVQQVSQQLITVLNDGMDDIKAREAAVDFLNLW 501 Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557 +I G+ + + I + + S +F Sbjct: 502 DDLPDLEIQYQGYLDKYNFPEINIEIQNQAQQELSAAFK 540 >gi|322420369|ref|YP_004199592.1| adenine-specific DNA-methyltransferase [Geobacter sp. M18] gi|320126756|gb|ADW14316.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacter sp. M18] Length = 539 Score = 254 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 101/468 (21%), Positives = 180/468 (38%), Gaps = 51/468 (10%) Query: 2 TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58 + T + +L +W A+ L K ++ IL LR E R + Sbjct: 8 EKDTAT-TTLEKRLWDAADQLRANSGLKPQEYSGPILGLIFLRFAEVRFAVQRGKLEAAG 66 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + GS +D + G Y E L + ++ + + + I + Sbjct: 67 ASSRRGSRVDDPAAYHAEG-ILYLPPEARFDYLLTLPEAADIGAKVN---TAMREIEKHN 122 Query: 119 D-FSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 SS + + L + LL ++ K S I P ++ IYE+ + F +G Sbjct: 123 QQLSSVLPKTYNLFTSTLLKELLKKVSEI---PASLDYDAFGRIYEYFLGAFAMTEGQGG 179 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L ++ + DP CG+GG + VA+ + Sbjct: 180 GEFYTPSSIVKLLAEVI-----------EPFHGRILDPACGSGGMFVQSARFVAEHQKN- 227 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293 L G E ET +C + + LE D R + N + D + +F Sbjct: 228 -PAAELAICGVEKTDETGRLCRLNLAVHGLEGDIRHGGNVN-----SYYDDPHSATGQFD 281 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPP 350 + L+NPPF +AV+KE +G RF GLP+ + + L++ + L Sbjct: 282 FVLANPPFNV------NAVDKERLKDMVGAGRRFPCGLPRSDNANYLWIQLFYSAL---- 331 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 N GRA V+++S A S E E+R+ L+E ++ +VA+ ++F+ + LW Sbjct: 332 NATGRAGFVMANSA---SDARSSEQELRQKLIEARAVDVMVAVGPNMFYTVTLPCTLWFF 388 Query: 411 SNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 K + +R V I+A ++ + + ++ +Y Sbjct: 389 DKGKAKTKRADTVLFIDARHIYRQVDRAHRDWTAAQIGFIGNLVRLYR 436 >gi|169823773|ref|YP_001691384.1| type I restriction-modification system specificity subunit [Finegoldia magna ATCC 29328] gi|167830578|dbj|BAG07494.1| type I restriction-modification system specificity subunit [Finegoldia magna ATCC 29328] Length = 828 Score = 254 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 186/485 (38%), Gaps = 66/485 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A L G + + + +L + + + R Sbjct: 1 MAVKKSELYSLLWDAANKLRGGVEPSRYKDYVLLLLFFKYVTDKYKGQR-----YGEFEI 55 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 G + + G + ++ I F + N K D F+ Sbjct: 56 GEGASFDDIIMAKGKP---------------DVGERVDKIIQKFLEINNLKGALPDVSFN 100 Query: 122 STIARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174 + L K L + F + D ++ + YE+ + +F E + Sbjct: 101 NP-EELGKGKELVDKVSGLIAIFQNPAIDFKKNRASGDDIIGDAYEYFMMKFAQESGKSK 159 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V + + L+ D + SP TL+DP G+G L A + + Sbjct: 160 GQFYTPSEVSRVISRLIGIGD---IENSPNKKWTLHDPAAGSGSLLIRAAD---EAPVDS 213 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290 I+ +GQE +T + ++ + + +TLS +T Sbjct: 214 NGDSIVTIYGQEKYSDTAGLAKMNFILHN-------KGTGEVHSDNTLSAPYYTDDFGEL 266 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLEL 348 +F + + NPPF K D + RF G G+P +G + +H+ L Sbjct: 267 RKFDFIVMNPPFSDKDWSD----GIKADEDTYHRFDGYGIPPEKNGDYAWFLHVLKAL-- 320 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 N G+A I+L LF G A E IR+ +L+ I+ IV LP++LF+ T I + Sbjct: 321 --NENGKAGIILPHGVLFRGNA---EETIRKEILKRKYIKGIVGLPSNLFYGTGIPACII 375 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467 I+ ++R G + +I+A+D + + +G K R + + +I+ ++ ++ K +SR Sbjct: 376 IIDKENADKREG-LFMIDASDGF---KKDGDKNR-LREQDIEKIVQVFTNKTEIKGYSRF 430 Query: 468 LDYRT 472 + Y+ Sbjct: 431 IAYKE 435 >gi|321310228|ref|YP_004192557.1| type I restriction-modification system, M subunit [Mycoplasma haemofelis str. Langford 1] gi|319802072|emb|CBY92718.1| type I restriction-modification system, M subunit [Mycoplasma haemofelis str. Langford 1] Length = 513 Score = 254 bits (649), Expect = 4e-65, Method: Composition-based stats. Identities = 103/504 (20%), Positives = 184/504 (36%), Gaps = 86/504 (17%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + +AN IW + L + T+ ILP R + + + G Sbjct: 3 SKDVANKIWSACDKLRSNMDGTEMKNYILPVVFYRFIS-------EKISQYVNDNFGKGG 55 Query: 68 DLESFVKVAGYSFYNTSE-----------YSLSTLGST----------NTRNNLES---Y 103 S +V N+S + L + L Y Sbjct: 56 SDYSLWEVDKAKKINSSLVQGLGCSLLPIHLFQNLKKDIDGNPEEGVLDLGKKLNEAFTY 115 Query: 104 IASFS------DNAKAIFEDFDFSST--IARLEK-AGLLYKICKNFSGIELHPDTVPDRV 154 + S N + + + +++ L K ++ + + +E D + Sbjct: 116 LEESSLHTSSASNFRNLLVNTNWNDVKLGGTLSKRNEIIADLVNIVNEMEFGSDYEDN-- 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + ++YE LI R+ S + +F TP V L + +++ + + +YDPTC Sbjct: 174 LGDVYEFLISRYASNGGKKGGEFYTPARVSELLSKIVIFEKE--------KVSKVYDPTC 225 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + G + +GQE T+ +C M I + + Sbjct: 226 GSGSLLL---KFMKMYGRDKGVK----VYGQENNVTTYNLCRMNMFIHGMSFN-----DF 273 Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330 +I G TL + F +SNPP+ KW+ D D RF G Sbjct: 274 DICLGDTLGEPCLTHEEGMFDVVISNPPYSLKWKSDGDKQIAN-----DSRFRDQGGFAP 328 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ H ++L+ G AAIV ++ L E IR++L+EN+ + A+ Sbjct: 329 KDKADFAFIQHALSRLKKD----GVAAIVCATGILTR---MGREENIRKFLVENNYVHAV 381 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + + DLF+ T I T + +L K KV I+AT + N + ++ + Sbjct: 382 IHMAKDLFYGTGIETVILVLKKEK---LDDKVLFIDATQKFIKSSN----KNDLSLENVE 434 Query: 451 QILDIYVSRENGKF-SRMLDYRTF 473 +IL +Y R++ +F S + + Sbjct: 435 EILRLYGDRKSEEFLSYLASNKEV 458 >gi|325981135|ref|YP_004293537.1| N-6 DNA methylase [Nitrosomonas sp. AL212] gi|325530654|gb|ADZ25375.1| N-6 DNA methylase [Nitrosomonas sp. AL212] Length = 772 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 101/576 (17%), Positives = 211/576 (36%), Gaps = 72/576 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 L +W A+ L D K +++ +L L+ + A+ +Y Sbjct: 2 NKVQLKKLEADLWSAADTLRANSDLKSSEYATPVLGLIFLKFADNNYRRHEKAILSEYQQ 61 Query: 62 FGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKA 113 G+ S + + FY L + L+ I + + Sbjct: 62 LQGTRREKPVSEIAIEQCGFYLPDHTRYDYLLNLPEEKDIAKALKEAMKAIEEYKPELEG 121 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + ++++ + ++ + F+ I P + IYE+ + F + Sbjct: 122 VLPKDEYAALTRT--DKTIPQQLLRTFADI---PANATGDLFGQIYEYFLSEFARSEGQK 176 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VV L ++ ++DP CG+GG + +A + Sbjct: 177 GGEFFTPRSVVRLMVEII-----------EPHGGKVFDPACGSGGMFVQSAQFIAAHRNE 225 Query: 234 HKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291 K V GQE +T + + + L + I+Q +T +D + ++ Sbjct: 226 LKGADSGVYVCGQEKTQDTVKLAKMNLAVNGLRGE--------IKQANTYYEDPYDSFEQ 277 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPK-------ISDGSMLFLMHLA 343 F Y L+NPPF + N + R + K + +G+ L++ A Sbjct: 278 FDYVLANPPFNVDDVSLSSVEKDRRFNTYGIPRNKSKVKKADEGKETVPNGNYLWISLFA 337 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ GRAA+V+++S A E++IR+ L+E +LI A++ LP+++F+ + Sbjct: 338 TSLKPQ----GRAALVMANSA---SDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTL 390 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI--LDIYVSREN 461 LW K ++ I+A +++T I R + + + I + + Sbjct: 391 PATLWFFDKAKRG---DRILFIDARNIFTQIDRA---HREFSAEHIQNIALISHLHKGQR 444 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 KF R++D Y + R + + + + A + + ++L+ Sbjct: 445 EKFIRLIDR----YFAAGMERLIENN-----EKIEPVCAQLLDVLDDAGGKQAVSELLQH 495 Query: 522 MMQ----QIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + + + + + + +++E + K S Sbjct: 496 WAELDKLKTHYQRYIQQNGFVTPRNSEESYVHDKIS 531 >gi|332297066|ref|YP_004438988.1| type I restriction-modification system, M subunit [Treponema brennaborense DSM 12168] gi|332180169|gb|AEE15857.1| type I restriction-modification system, M subunit [Treponema brennaborense DSM 12168] Length = 866 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 100/480 (20%), Positives = 181/480 (37%), Gaps = 63/480 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65 + LA IW++A ++ + ++ IL F + L L + S Sbjct: 2 NKQQLATKIWESANEMRSKIEANEYKDYILGFIFYKYLSETELRFAKKNGCTDADIKKFS 61 Query: 66 NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117 D E+ + Y + + T G +N+ +++FS K +F+ Sbjct: 62 ENDAETATYIKSNIGYFIAYENLFSTWITKGKDFDVSNVRDALSAFSRLINPAHKKVFDG 121 Query: 118 F--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 S +++L + + K+ + I + V+ +YE+LI F + Sbjct: 122 IFNTLQSGLSKLGETAASQTSAISKLLALINDIPMDGK-QDYDVLGFVYEYLISMFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ + +YDPT G+G L N Sbjct: 181 GKKAGEFYTPHEVSLLMSEVIAFHLKNRKEIK------IYDPTSGSGSLLI---NIGRSV 231 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 H + + QEL+ T+ + +++R + D + TL D Sbjct: 232 AKHIDNKNNIKYYAQELKQNTYNLTRMNLIMRNILPDNIVT-----RNADTLESDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ +KW+ + + N GL S FL Sbjct: 287 ENDPVHTYDPLYVDAVVSNPPYSQKWDSTNKENDPRYSN-------YGLAPKSKADYAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H ++ G IVL LF G E EIR+ L+E D I+AI+ LP ++FF Sbjct: 340 LHDLYHVKPD----GIMTIVLPHGVLFRGGE---EGEIRKKLIEKDQIQAIIGLPANIFF 392 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + +L ++T+ V +++A+ + K + ++I D R Sbjct: 393 GTGIPTVIIVLRQKRTDS---DVLIVDASKGYIKE----GKNNKLRSSDIKRITDTVNGR 445 >gi|321310237|ref|YP_004192566.1| type I restriction-modification system, M subunit [Mycoplasma haemofelis str. Langford 1] gi|319802081|emb|CBY92727.1| type I restriction-modification system, M subunit [Mycoplasma haemofelis str. Langford 1] Length = 523 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 106/504 (21%), Positives = 186/504 (36%), Gaps = 71/504 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--PTRSAVREK 58 M L IWK+ EDL G + I R + + ++S + Sbjct: 1 MFNVREERRELYRSIWKSCEDLRGSMDGYEMKNYIFVMMFYRFMSESFVYWFSKSEWDDG 60 Query: 59 YLAFGGSNIDLESFV-----KVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIA------- 105 F +N+ E + V F+ + + + I Sbjct: 61 NKDFDYANLSDEEAIPWKEDAVKKKGFFMLPSQLFGNVLKKVIEDQHFAEEINTCLPKIF 120 Query: 106 --------SFS--DNAKAIFEDFDFSS-TIAR--LEKAGLLYKICKNFSGIEL-HPDTVP 151 FS ++ K + + + LE+ + ++ K G + Sbjct: 121 RAVENSSIGFSSEEDIKGLLTSVSWDDVKLGTVVLERNKKIVEVMKAIGGSKFDFISEHE 180 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 V+ YEHL+ ++ S + +F TP +V L T + + + +YD Sbjct: 181 IDVLGEAYEHLMEQYASTSGKKGGEFYTPPEVSRLLTKIAVGD-------KTYISGGVYD 233 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L +N + + GQE T+ +C M + + + Sbjct: 234 PACGSGSLLLKCVNLL-------GAKNVSEMCGQEKNMTTYNLCRMNMFLHGVNYNK--- 283 Query: 272 LSKNIQQGSTLS--KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PG 327 +I+ G TL + KRF +SNPP+ KW + + K RF Sbjct: 284 --FDIRHGDTLEYPDPARSKKRFEIIVSNPPYSAKWAGE-----DDVKLLTDPRFEQVGA 336 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L S F++H + L + G+A IV ++ L E IR+WL+ + I Sbjct: 337 LAPKSAADFAFILHCLHLL----SSTGKAVIVCATGVLTRLGK---EKHIRKWLISQNYI 389 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 E+++ L LF+ T ++ + ILS K++ V ++AT+++ RN + ++D+ Sbjct: 390 ESVIYLAPKLFYETGVSVVIMILSKSKSDS---NVLFVDATNIFIKDRN----QNRLSDE 442 Query: 448 QRRQILDIYVSRENGKFSRMLDYR 471 QIL IY R N F + Sbjct: 443 NIAQILKIYRERVNVPFVAKVASN 466 >gi|291542118|emb|CBL15228.1| type I restriction system adenine methylase (hsdM) [Ruminococcus bromii L2-63] Length = 511 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 197/550 (35%), Gaps = 85/550 (15%) Query: 26 FKHTDFGKVILPFTLLRRLECALE-----------PTRSAVREKYLAFGGSNIDLESFVK 74 +++ IL F R L E + E Y A S + Sbjct: 1 MDASEYKNYILAFMFYRYLSEHQEQYLLSNNVIDLEDGQTINEAYKAMAVSEDLADYIKD 60 Query: 75 VAGYSFYNTSE-YSLSTLGST------------NTRNNLESY--IASFSD-NAKAIFEDF 118 ++ Y + ++L N E + + ++ + + +F D Sbjct: 61 ISSALGYAIEPNDTWASLVEKIENSEVIPSDYQTIFANFEEHAKLNKEAEKDFRGVFNDV 120 Query: 119 DFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + + E+A L +I K + D D + IYE LI RF + + Sbjct: 121 NLGDSRLGSSTNERAKSLNRIVKLVDSTQYKSDDGKDI-LGEIYEFLIGRFAATAGKKGG 179 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V + ++ D + ++YDPTCG+G L V D Sbjct: 180 EFYTPHEVSKVLAKIVTDDVKESDS-----VFSVYDPTCGSGSLLLT----VQDEVPGGN 230 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------ 289 + +GQEL T+ + +++ + + TL D G Sbjct: 231 NTGAVKFYGQELNTTTYNLARMNLMMHGVSFQNMSLSNA-----DTLESDWPDGPDVKGI 285 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLAN 344 + F ++NPP+ W+ + + + RF L + F++H Sbjct: 286 DHPRSFDAVVANPPYSAHWDNSETKL-------KDPRFKDYGKLAPKTKADYSFVLHGLY 338 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN---DLIEAIVALPTDLFFRT 401 L G AIVL LF G A E IR+ L+E+ + I AI+ LP++LF+ T Sbjct: 339 HLNEE----GTMAIVLPHGVLFRGAA---EGTIRQNLIEHPSGNRIYAIIGLPSNLFYGT 391 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 I T + +L ++T + + I+A++ + +N + + + +I+ Y R++ Sbjct: 392 GIPTIIMVLKKKRTGK---DILFIDASNDFKKEKN----QNKLTAENIDKIISTYRERKD 444 Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 K++ + + P +D T RKL + ++ Sbjct: 445 VPKYAHLASIEEIRQNDYNLNIPRY----VDTTEEEEEIDIDEVRKLIAQDKKEIEELEA 500 Query: 521 PMMQQIYPYG 530 + +Q G Sbjct: 501 QIAEQFKLLG 510 >gi|119477797|ref|ZP_01617920.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143] gi|119448958|gb|EAW30199.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143] Length = 707 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 116/648 (17%), Positives = 220/648 (33%), Gaps = 83/648 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T L +W A++L D K T++ +L L+ + A+ +++ Sbjct: 2 NTEQLKQLEKDLWSAADNLRANSDLKSTEYATPVLGLIFLKFADNNYARAEQAINKEFAK 61 Query: 62 FGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKA 113 G+ + + FY L + ++ I + Sbjct: 62 LTGTRREKPIDEIAIEKCGFYLPPHARYDYLLNLPEQEDAAKKIKEAMLDIEKYKPELDG 121 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + ++ + ++ KNFS I P ++ IYE+ + F +G Sbjct: 122 VLPKDEYVPLTRT--DKTIPAQLLKNFSNI---PRDASGDILGKIYEYFLGNFALAEGQG 176 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP VV L ++ T+YDP CG+GG + ++V Sbjct: 177 GGQFFTPTSVVKLMVEII-----------EPYKGTVYDPACGSGGMFVQSQHYVEQHRDE 225 Query: 234 HKIPPILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 K L +GQE +T + + + L + I+Q ++ S+D Sbjct: 226 LKALGELHEEDQLYVYGQEKTLDTVKLAKMNLAVNGLRGE--------IKQANSYSEDPH 277 Query: 288 TGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------I 331 G +F + ++NPPF RF G+P+ + Sbjct: 278 NGFGKFDFVMANPPFNVDDVPIATV-------EADTRFNTYGIPRKKTKAKAADKGKETV 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + L++ A L+ GRAA+V+++S A E++IR+ L+EN+LI ++ Sbjct: 331 PNANYLWISLFATSLKDNSKDSGRAALVMANSA---SDARHSEADIRQSLIENNLIYGML 387 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP+++F+ + LW K + K+ I+A + +T I ++ Sbjct: 388 TLPSNMFYTVTLPATLWFFDKNKQD---DKLLFIDARNTFTQIDRAHREFNEQQIHNIAI 444 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL- 510 I ++ F R++D F ++ + + L LE + L Sbjct: 445 ISKLHKGNRQA-FVRLVDSY-FSQGIQQLSENQQHIAPISNQLLDVLEDQNGKLAVGDLV 502 Query: 511 HQSFWLDILKPMMQQ--IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 Q L L+ + I + + N+ + K F A + D Sbjct: 503 KQWKGLKKLQTAVDNYFIEADVYKGKDDFNVSEKNKLQHKLRKKFDPFFDALHAGLKQLD 562 Query: 569 P----RADPVTDVNGEWIPDTNLT----EYENVPYLESIQDYFVREVS 608 V + D + E E+++ +EV Sbjct: 563 KIVRQHEKEVEQKKAKAASDGKSKRFTADREIKKLKEALEL-LHKEVK 609 >gi|291614892|ref|YP_003525049.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1] gi|291585004|gb|ADE12662.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1] Length = 689 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 110/569 (19%), Positives = 208/569 (36%), Gaps = 75/569 (13%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 L +W A+ L D K +++ +L L+ + + + +Y Sbjct: 2 NKEQLKKLEADLWSAADKLRANSDLKSSEYATPVLGLIFLKFADNNYRRFETEIHAEYTK 61 Query: 62 FGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKA 113 GS S + + FY L N L+ I + + Sbjct: 62 LKGSRREKKISDIAIEKCGFYLPDHARYEHLLNLPEEKNIAKALKEAMKAIEEYKPELEG 121 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + ++++ + ++ + F+ I P + IYE+ + F + Sbjct: 122 VLPKDEYAALTRT--DKTIPQQLLRTFADI---PADATGDLFGQIYEYFLSEFARSEGQK 176 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +F TPR VV L ++ ++DP CG+GG + +A+ Sbjct: 177 GGEFFTPRSVVRLMVEII-----------EPHGGKVFDPACGSGGMFVQSAQFIAEHRKE 225 Query: 234 HKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-R 291 K V GQE +T + + + L + I+Q +T +D + Sbjct: 226 LKGSESGVYVCGQEKTRDTVNLAKMNLAVNGLRGE--------IKQANTYYEDPYQSFGA 277 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------ISDGSM 336 F Y L+NPPF + RF G+P+ + +G+ Sbjct: 278 FDYVLANPPFNVDDVSLSSV-------EKDKRFNTYGIPRNKSKVKKADAGKETVPNGNY 330 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L++ A L+ GRAA+V+++S A E++IR+ L+E +LI A++ LP++ Sbjct: 331 LWINLFATSLKAQ----GRAALVMANSA---SDARHSEADIRKTLIEQNLIYAMLTLPSN 383 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ--ILD 454 +F+ + LW KT+ K+ I+A +++T I R +++ + I+ Sbjct: 384 MFYTVTLPATLWFFDKAKTD---DKILFIDARNIFTQIDRA---HREFSEEHIQNIAIIS 437 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-HQS 513 KF +++D F +++ + L L+ + + L Q Sbjct: 438 QLHKGRREKFVQLIDRY-FAAGMQRLVENKTNVEPVSAQLLEVLDDAGGKQAVGELVQQW 496 Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKS 542 L LK +Q ES V + K+ Sbjct: 497 AGLAKLKTRYEQYQEKHADESAVDKKNKA 525 >gi|171920161|ref|ZP_02931556.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902534|gb|EDT48823.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 476 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 102/525 (19%), Positives = 205/525 (39%), Gaps = 61/525 (11%) Query: 33 KVILPFTLLRRLEC----ALEPTRSAVREKYLAFGGSNIDLESFVKVAG-----YSFYN- 82 +I+ L+ + A+ + ++K+ ++ DL S G + +N Sbjct: 2 HIIIGIIFLKTISDKYNYAINSLKDKYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNY 61 Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 S ++ + I + + K +F S + + L + + F+ Sbjct: 62 ISGFTTDSSIGEKIDQAFLK-IENQNPRLKGLFNKQYNSPELDK----TRLGNVVRKFND 116 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + ++ IYE+ + F + + +F TP+ VV L +L Sbjct: 117 YDF--SQFNEDLVGRIYEYFLGEFFRKQGQKGGEFYTPKTVVELLIDIL----------D 164 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 P +YDP CGTGG A N++ + + +GQE + +T + +L+ Sbjct: 165 PNDNIKMYDPACGTGGMFVQARNYLHEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLN 221 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + + T +DL G++F ++NPPF K ++ + E Sbjct: 222 GFNENDIHLGRGS---EDTFKEDLHKGQKFDIIVANPPFNLKKWYREELLNDE------- 271 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 RF G+P ++ + +L+H+ +KL G+A ++L++ L + ES +R+ ++ Sbjct: 272 RFSWGMPPENNANYAWLLHIISKLNSR----GKAGVILANGSLSSSNKE--ESLLRKKMI 325 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E ++++AI++LP LF+ T I+ +W + K E V I A+ + K R Sbjct: 326 EENIVDAIISLPDKLFYTTQISASIWFFNKNKENE---NVLFIEASKMGELKTK---KLR 379 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD 501 + D +I ++Y E G+ D G+ + + + + L E + Sbjct: 380 FLTKDDILKIKNVYDRHEQGE-----DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQE 434 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 + + + L + ++ KESIK K Sbjct: 435 VIDHEQLNHEIKGLQEELSILFDELEDLISQ---AKESIKKVLEK 476 >gi|295090547|emb|CBK76654.1| Type I restriction-modification system methyltransferase subunit [Clostridium cf. saccharolyticum K10] Length = 471 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 92/507 (18%), Positives = 177/507 (34%), Gaps = 59/507 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNT 96 ++ L + ++ K + + ++ + + + Sbjct: 1 MLFIKYLSDI---DKEDIQCKNNVCLSEQESNHVYFTIDNQPVFDYLYNNRNDMEIGNTI 57 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPDTVPDR 153 L S + + F+ EK +L + + F+ ++L P + Sbjct: 58 NMVLSDVGKRNSGMVGHVLQGISFNDQGDLGETEEKNEVLRNLLEKFNCLDLRPSQLEFT 117 Query: 154 VM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +E+++ S + + TP+ V L L+ +D YDP Sbjct: 118 DIVGEAFEYMVAMLASNDRKRGAESFTPKQVCELLAFLVQPKEDDRI----------YDP 167 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+GG L V +GQE+ ET A+C+ M + + Sbjct: 168 TCGSGGLLLQVYKKV--------PGGKASIYGQEINAETWAICMMNMFLHGIN------- 212 Query: 273 SKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEK----------DKDAVEKEHKN 318 I +G TLS +F ++N PF ++ + + Sbjct: 213 EAQIWKGDTLSNPKNIQNDKLMKFQVVVANLPFSLNQWDRGFLYKVDVDNQIKKKMSAEL 272 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 RF G+P S G F++H+ L GR A+VL LF G E IR Sbjct: 273 DPYHRFDLGVPPASKGDYAFILHMLASL---DEKNGRMAVVLPHGVLFRGA---SEGNIR 326 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 R ++E +L++ ++ LP +LF+ T+I + I +T+ + I+A+ + G Sbjct: 327 RQIVEMNLLDTVIGLPANLFYGTSIPVCVLIFKKNRTDR---DILFIDASGNENIEK--G 381 Query: 439 KKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 K I+ D +I+ Y++R+ K+S + + + + D + Sbjct: 382 KNHNILQDSAITRIVRTYMARQNENKYSYIASFDEIKGNDFNLSIARYVKNFEDDEKVNI 441 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQ 524 +E + I K + + Sbjct: 442 IEVKNAISNIEIELDKVQSQIRKYLEE 468 >gi|47459119|ref|YP_015981.1| type I restriction enzyme m protein [Mycoplasma mobile 163K] gi|47458448|gb|AAT27770.1| type I restriction enzyme m protein [Mycoplasma mobile 163K] Length = 526 Score = 250 bits (639), Expect = 6e-64, Method: Composition-based stats. Identities = 107/493 (21%), Positives = 186/493 (37%), Gaps = 82/493 (16%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--------------- 50 + + L IW DF + + R + L Sbjct: 18 KNVSELKKSIWNA--------DEWDFKEYVFGIIFYRYISENLADYINQDEWKANKNTNF 69 Query: 51 TRSAVREKY----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIA 105 + + Y I + F + F N + SL+ + E + Sbjct: 70 RYENIEDNYILSRKEEIKELIKDKGFFIKPSHLFINILKKSLNDKDLNVTLGEVFEEIES 129 Query: 106 SFS-----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV- 154 S + + K +F D + ++ ++L E+ L K+ K +EL Sbjct: 130 STNGTTSEKSFKGLFADINLNN--SKLGSTVNERNENLAKLIKVIGEMELGNFQDNSIES 187 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++YE+L+ + S + ++ TP++V L + L + K +YDP C Sbjct: 188 FGDVYEYLMSMYASNAGKSGGEYYTPQEVSELLAKITLVGKKEINK--------VYDPAC 239 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + + K GQE T+ +C M + + + Sbjct: 240 GSGSLLLNFAKIL------GKEKVRNGFFGQETNQTTYNLCRINMFLHDINYNKF----- 288 Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 NI QG TL+ L + F +SNPP+ KW + + RF P L Sbjct: 289 NISQGDTLTNPLHNKFEPFEAIVSNPPYSIKWAGKSNPL-----LINDPRFSPAGVLAPE 343 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S + F+MH + L G AAIV ++ G A E +IR++L++N+ I+AI+ Sbjct: 344 SKADLAFIMHSLSYL----AVNGTAAIVTFPGVMYRGGA---EQKIRKYLVDNNFIDAII 396 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T+IAT + +L K + I+A+ + I N ++ + + Sbjct: 397 QLPENLFFGTSIATCILVLKKNK---LVNDILFIDASKEFQKITNS----NKLSKENISK 449 Query: 452 ILDIYVSRENGKF 464 IL+ Y R + + Sbjct: 450 ILNTYEKRIDLEH 462 >gi|119510903|ref|ZP_01630026.1| type I restriction-modification system, M subunit, putative [Nodularia spumigena CCY9414] gi|119464431|gb|EAW45345.1| type I restriction-modification system, M subunit, putative [Nodularia spumigena CCY9414] Length = 471 Score = 250 bits (639), Expect = 6e-64, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 146/353 (41%), Gaps = 35/353 (9%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T S L FIW A+ L G ++ + +V+LP +L RL+ LEPT+ V + Sbjct: 4 TNTENSHQDLIGFIWTIADKLRGPYRPPQYRRVMLPLIVLGRLDAVLEPTKQDVLDAKAK 63 Query: 62 FGGSNIDLESFVKV--------AGYSF-YNTSEYSLSTL--GSTNTRNNLESYIASFSDN 110 + + E+F K F YNTS+++ L + +NL +YI FS Sbjct: 64 YEAMGLQGEAFEKAIAKVAIGSDRQQFLYNTSKFTFQELLNDADGIASNLINYINGFSPR 123 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGS 168 A+ IFE F+F S I +L+++ LY I K+F ++L P + + M ++E L+R+F Sbjct: 124 ARDIFEKFNFESEIQKLDESNRLYLIIKDFCKPEVDLSPAQLSNLQMGYLFEELVRKFNE 183 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +E A D TPR+V+ L L+ + +F G+ R++YDPT GTGG L+ + H+ Sbjct: 184 QANEEAGDHFTPREVIRLMVNLVFCEETDVF--QQGIYRSVYDPTLGTGGMLSVSEEHIK 241 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + GQE E ++ + + Sbjct: 242 KQNPEANLG----LFGQEYNIEKLDEKRTALISHAVTKGLDPSVP-------------MK 284 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 + P + + K R P+ DG F+ Sbjct: 285 DSGIEWLGKIPNHWEVIKVKHLTKILRGKFTHRPRND---PRFYDGQYPFIQT 334 >gi|228475437|ref|ZP_04060155.1| N-6 DNA methylase [Staphylococcus hominis SK119] gi|228270219|gb|EEK11654.1| N-6 DNA methylase [Staphylococcus hominis SK119] Length = 410 Score = 249 bits (637), Expect = 9e-64, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 18/306 (5%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSN--IDLESFVKVAGYSFYNTSEYSLSTL--GST 94 T+++RL L TR V + N + +GYSFYNTS Y+ TL + Sbjct: 110 TVIKRLHDTLLKTRDEVIKSAENTQSMNSVMRERLLKNASGYSFYNTSLYTFETLLADPS 169 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPD 152 N +N ++ FS+N + I ++F F I + L+ + + F+ ++ + PD + Sbjct: 170 NIESNFRDFLNGFSENMQDILDNFKFDVEITTMTDNDALFYVIQEFNKVDAYLDPDKMTS 229 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 M ++E L+R+F +E A T RD+++L T LLL D + +T+YD Sbjct: 230 TDMRYVFEKLVRKFSESYNEEAGAHFTSRDIIYLMTDLLLIEDKNTLF-KEHVFKTVYDQ 288 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 T GT L+ + D ++ GQEL PET+A+ A +IR E Sbjct: 289 TMGTSQMLSAMTERIHDVNDTAEVAT----FGQELNPETYAIAKADTMIRGGEP------ 338 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 +N+ STL+ D F G F Y +SNPPFG W+KD+++V+ EH+ ELGRFG GLP++S Sbjct: 339 -ENMALESTLTNDQFEGFTFDYYISNPPFGVDWKKDQESVKAEHELSELGRFGVGLPRVS 397 Query: 333 DGSMLF 338 DG +LF Sbjct: 398 DGQLLF 403 >gi|167855556|ref|ZP_02478317.1| putative type I modification enzyme [Haemophilus parasuis 29755] gi|167853302|gb|EDS24555.1| putative type I modification enzyme [Haemophilus parasuis 29755] Length = 443 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 167/451 (37%), Gaps = 55/451 (12%) Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--- 151 N ++ I + K + + + ++E++ LL + FS T+ Sbjct: 33 NLIDDAFDAIEQDNPKLKNVIQRI----SPYKVEESILLG-LIDLFSDTNFTRPTLDGKQ 87 Query: 152 -----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 88 ISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYK 136 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP G+GGF + + + + GQE P T + M IR +E Sbjct: 137 GRIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEF 193 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D + + T S K+ + ++NPPF K + R+ Sbjct: 194 DFGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWNESLAQDPRWQY 240 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 G+P + + +L H+ L GR A++L++ + + E EIR+ +L+ DL Sbjct: 241 GIPPEGNANFAWLQHMIYHLSP----NGRMALLLANGSMSSNTNN--EGEIRKNILKADL 294 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 +EA++ALP+ LF T I +WIL+ K +G+V I+A L R Sbjct: 295 VEAMIALPSQLFTNTQIPACIWILNKNKAR--KGEVLFIDARQLGYMKDRV---LRDFTA 349 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWR 505 D ++ D Y S + + + F Y + + F+L E + Sbjct: 350 DDIAKVADTYHSWQQS--ADYQNIPAFCYTA-SLDEIAQNDFVLTPGRYVGAAEQEDDGV 406 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q + + Q ++ + Sbjct: 407 PFAEKMQELTALLQQQFKQSAELEAKIKANL 437 >gi|313894016|ref|ZP_07827582.1| putative type I restriction-modification system, M subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441580|gb|EFR60006.1| putative type I restriction-modification system, M subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 579 Score = 247 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 93/488 (19%), Positives = 183/488 (37%), Gaps = 71/488 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT+ L + +W +A+ L +G+ IL LR + + + + E+ Sbjct: 1 MTDKE--LKQLKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEIIEEE 58 Query: 59 YLAFGGSNIDLE-SFVKVAGYSFYNTS--EYSLSTLGSTNTRNN-----LESYIASFSDN 110 Y G ++ + + FY Y + I + + Sbjct: 59 YNRLKGGRMEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIETENPK 118 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + + + + E+ LL I + F I P+ + IYE+ + F Sbjct: 119 MDGVLPK-EVYAQLVPEEEPELLSNIVRIFKDI---PENSTVDIFGEIYEYFLGNFALAE 174 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP VV + PG + DP CG+GG A ++ + Sbjct: 175 GKDGGTFYTPATVVRYMVEV--------LNPQPGE-KKFLDPACGSGGMFVQAARYMHNH 225 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + +G E EP+T + +L+ + D I Q ++ D + Sbjct: 226 NASESEQMKFRCYGVEKEPDTVKLAKMNLLLNNIRGD--------ITQANSFYSDPYNAA 277 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK---------------ISD 333 +F Y ++NPPF + + RF G+P+ + + Sbjct: 278 GQFDYVMANPPFNVDEVVVEKVSD-------DVRFNTYGVPRNKSKSTKKKSDKKETVPN 330 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + L++ + A L N G+AA+V+++S A E +IR+ ++E +I +V L Sbjct: 331 ANYLWIGYFATAL----NENGKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTL 383 Query: 394 PTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ- 451 P+++F + LW +K +++ ++ I+A +++T + +K +D+Q + Sbjct: 384 PSNMFSSVTLPATLWFFDKQKPNTDKKNEILFIDARNVFTQVDRAHRK---FSDEQIKNL 440 Query: 452 --ILDIYV 457 I +Y Sbjct: 441 GVITKLYH 448 >gi|188532536|ref|YP_001906333.1| Type I restriction-modification system, M subunit [Erwinia tasmaniensis Et1/99] gi|188027578|emb|CAO95425.1| Type I restriction-modification system, M subunit [Erwinia tasmaniensis Et1/99] Length = 494 Score = 247 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 103/461 (22%), Positives = 173/461 (37%), Gaps = 68/461 (14%) Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79 G I+ L+ + + + E ++ + G S Sbjct: 19 NIFRGRLDAIQCLDYIISLIFLKYISDLICD----INEDRVSDNDLRLKELLSNVPKGMS 74 Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFDFSSTIARLE--- 128 FY+ S S + + + ++ + + IF D DF+S RL Sbjct: 75 FYSIS----SEINHGGIGERINTALSCYDEAIFQSLYKCDSRIFSDIDFTS--DRLGPAR 128 Query: 129 -KAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + L ++ F+ E + D +S I L + SE DF TP V Sbjct: 129 GRDAFLSELMHIFNSREFQFNYYNDGADRISLICSILFEKTASEAGLRGGDFYTPHGVSA 188 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L + L+ SP ++YDP CGTG L A++ + + + +GQ Sbjct: 189 LLSELV----------SPRAGDSIYDPACGTGSLLLSAVHKI----PYIEKCQNHNVYGQ 234 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPP 300 E+ + + M + + S I+ G F +F LSNPP Sbjct: 235 EIIKVSWNIAYINMFLHGV-------YSCKIKWGDVFQNPQFKNSKSELAKFDVVLSNPP 287 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F KE + GRF G+P S F++H+ L+ GR A+V+ Sbjct: 288 FSMSNWG-----NKEALSDRFGRFAMGVPPQSKADYAFILHMIASLKDDT---GRMAVVV 339 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 LF G E+ IR L++ +L++A++ LP LF TNI+T + I K Sbjct: 340 PHGVLFRGAN---EALIRMNLIKENLLDAVIGLPERLFLSTNISTAILIFRKNK---MDS 393 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 V I++T L+ + + R I + ++IL + R++ Sbjct: 394 NVLFIDSTILFENSKG----RNYITGEHIKRILKAFHERQD 430 >gi|71906938|ref|YP_284525.1| N-6 DNA methylase [Dechloromonas aromatica RCB] gi|71846559|gb|AAZ46055.1| N-6 DNA methylase [Dechloromonas aromatica RCB] Length = 529 Score = 247 bits (631), Expect = 5e-63, Method: Composition-based stats. Identities = 85/460 (18%), Positives = 165/460 (35%), Gaps = 46/460 (10%) Query: 2 TEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 T + L + +W A+ LW + K ++F +L LR E + + Sbjct: 13 NRMTINLQDLESRLWSAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLVAGG 72 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 L D+E F A + Y + L +++ I +A ++ + Sbjct: 73 LEVS----DIEKFDYQAEGALYLPETARFTYLLDLAEGHDIGKAINEAMAAVEA--DNDE 126 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + R + ++ + + IYE+ + +F + F T Sbjct: 127 LKGVLPR-SYGKVENRVLVELLRLLNGLGEIEGDAFGKIYEYFLGKFALAEGQKGGVFYT 185 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P +V L ++ ++DP CG+GG + V Sbjct: 186 PTSIVKLIVEII-----------EPFHGQIFDPACGSGGMFVQSAMFVGRHKKRAAEEL- 233 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSN 298 G E +T + + + L D +++ +T +D RF + ++N Sbjct: 234 -TVFGTEKSNDTVKLAKMNLAVHGLSGD--------VRESNTYYEDPHKAVGRFDFVMAN 284 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + + + RF G+P + + L++ + L N GRA Sbjct: 285 PPFNVSG-------VDKERIKDDPRFPFGVPTTDNANYLWIQLFYSAL----NNTGRAGF 333 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-E 417 V+++S G A E EIR+ L+ + +EAIV++ + F+ + LW K + E Sbjct: 334 VMANSA---GDARGAELEIRKKLILSGGLEAIVSVGPNFFYTVTLPCTLWFFDKTKAKRE 390 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 R+ KV I+A + + + + I+ ++ Sbjct: 391 RKDKVLFIDARGYYRQVSRAIRDFLPEQVEFLSNIVRLWR 430 >gi|169825229|ref|YP_001692840.1| type I restriction-modification system DNA methylase [Finegoldia magna ATCC 29328] gi|167832034|dbj|BAG08950.1| type I restriction-modification system DNA methylase [Finegoldia magna ATCC 29328] Length = 579 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 90/488 (18%), Positives = 180/488 (36%), Gaps = 71/488 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT+ L + +W +A+ L +G+ IL LR + + + + + Sbjct: 1 MTDKE--LKELKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEEIEAE 58 Query: 59 YLAFGGSNIDLE-SFVKVAGYSFYNTS--EYSLSTLGSTNTRNN-----LESYIASFSDN 110 Y G ++ + + FY Y + I + Sbjct: 59 YNRLKGGRMEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIEDENPK 118 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + + + + E+ LL I + F I P+ + IYE+ + F Sbjct: 119 MDGVLPK-EVYAQLVPEEEPELLSNIVRIFKDI---PENSTIDIFGEIYEYFLGNFALAE 174 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP VV + PG + DP CG+GG A ++ + Sbjct: 175 GKDGGTFYTPATVVRYMVEV--------LNPQPGE-KKFLDPACGSGGMFVQAARYMHNH 225 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + +G E EP+T + +L+ + D I + ++ D + Sbjct: 226 NASESEQMKFRCYGVEKEPDTVKLAKMNLLLNNVRGD--------ITEANSFYSDPYNAY 277 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK---------------ISD 333 +F Y ++NPPF + + RF G+P+ + + Sbjct: 278 GQFDYVMANPPFNVDEVVVEKVSD-------DNRFNTYGVPRNKSKSKKKKSDKKETVPN 330 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + L++ + A L G+AA+V+++S A E +IR+ ++E +I +V L Sbjct: 331 ANYLWIGYFATALNEK----GKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTL 383 Query: 394 PTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ- 451 P+++F + LW +K +++ ++ I+A +++T + +K +D+Q + Sbjct: 384 PSNMFSSVTLPATLWFFDKQKPNTDKKNEILFIDARNVFTQVDRAHRK---FSDEQIKNL 440 Query: 452 --ILDIYV 457 I +Y Sbjct: 441 GVITKLYH 448 >gi|15828904|ref|NP_326264.1| restriction modification enzyme subunit M2 [Mycoplasma pulmonis UAB CTIP] gi|14089847|emb|CAC13606.1| RESTRICTION MODIFICATION ENZYME SUBUNIT M2 [Mycoplasma pulmonis] Length = 520 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 105/498 (21%), Positives = 185/498 (37%), Gaps = 70/498 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ L + K + L + T++ I+ F + L E +E+ S Sbjct: 2 SNSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61 Query: 66 NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109 D + + F+ +YS + N +E I S + Sbjct: 62 EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121 Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 K +F + DFS+ I EK + I K + + L D V N Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIKEINTLNLSMDEVD--HFGN 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+L+ F S+ + A +F TP V L ++ I YDP CG+G Sbjct: 179 TYEYLLSEFASDTGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L N V +GQE++ T+ + ++R + +++ Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276 Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 G TL L F ++NPPF +KW ++ + N P L S Sbjct: 277 SGDTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYAD 331 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL H+ + G A V S L E +IR+++++ + I+ I+ LP Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRKSPK-AEEDIRKYIIDKNYIDTIIFLPP 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T I + + + K + ++ +INAT + + + K+ ++D+ +I Sbjct: 388 NLFYNTGIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442 Query: 456 YVS-RENGKFSRMLDYRT 472 + RE FS+ + Y Sbjct: 443 WKEKREEENFSKYISYED 460 >gi|217968469|ref|YP_002353703.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp. MZ1T] gi|217505796|gb|ACK52807.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp. MZ1T] Length = 517 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 93/495 (18%), Positives = 178/495 (35%), Gaps = 69/495 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + L +W A+ LW + K ++F +L LR E + + E L Sbjct: 1 MSLDLNQLETRLWAAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLIESGLG 60 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAKAI 114 E F A + Y S L +L + + ++ K + Sbjct: 61 VSEI----EKFDYQAEGALYLPDNAHFSYLLDLAEGQDLGKAVNEAMAAVEAENEELKGV 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + RL +L ++ + +G+ V IYE+ + +F + Sbjct: 117 LPR-----SYGRLP-NTVLVELLRVLNGLG----EVEGDAFGKIYEYFLGKFALAEGQKG 166 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V L ++ ++DP CG+GG + V+ Sbjct: 167 GVFYTPTSIVKLIVEII-----------EPFHGKIFDPACGSGGMFVQSAQFVSRHQKRA 215 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289 +G E +T + + + L D I++ +T +D Sbjct: 216 AEEL--TVYGTEKANDTVKLAKMNLAVHGLSGD--------IRESNTYYEDPHKAVVGNT 265 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F + ++NPPF + + + RF G+P + + L++ H L Sbjct: 266 GKFDFVMANPPFNVSG-------VDKERVKDDPRFPFGIPTTDNANYLWIQHFYTAL--- 315 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 N GRA V+++S G A E EIR+ L++ ++ IV++ ++ F+ + LW Sbjct: 316 -NERGRAGFVMANSA---GDARGTELEIRKKLIQTGGVDVIVSVGSNFFYTVTLPCTLWF 371 Query: 410 LSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKF-SR 466 K + ER+ +V I+A + + + + I+ ++ + S+ Sbjct: 372 FDRAKAKGERKDEVLFIDARGTYRQVSRAIRDFLPEQIEFLANIVRLWRGEAVEIEAGSQ 431 Query: 467 MLDYRTF---GYRRI 478 + + F GYR I Sbjct: 432 EMLRQQFPEGGYRDI 446 >gi|153951493|ref|YP_001398800.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. doylei 269.97] gi|152938939|gb|ABS43680.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 489 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 99/517 (19%), Positives = 187/517 (36%), Gaps = 76/517 (14%) Query: 22 LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----EKYLAFGGSNIDLESFVKVAG 77 + G DF +L F + E +S V + Y + + Sbjct: 1 MRGSVDGWDFKSYVLGFLFYYFIC---ENLKSYVLNSFKQDYENLSDEMAENGRDTVINA 57 Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDN-------AKAIFEDFDFSST- 123 F+ + + + NL ++ S N + +F+D D S Sbjct: 58 KGFFIKPSHLFTNIFKNANLENLNEKLSVVFKEIESSANGSESEKSFRGLFDDLDLYSNK 117 Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 E+ + KI + S ++LH + + YE L+ + S + +F TP+ Sbjct: 118 LGADNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMYASNAGKSGGEFFTPQ 177 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L + L + K +YDP CG+G L + Sbjct: 178 EVSKLLVEITLHNNAKPNK--------VYDPACGSGSLLLQYKKSLKSDPKKG------- 222 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSN 298 GQE+ T+ + M + + +I G TL S++ + F +SN Sbjct: 223 YFGQEINITTYNLARMNMFLHDVN-----YTRFDIAHGDTLISPSENHKELEPFDAIVSN 277 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRA 356 PP+ KWE + RF L S + F+MH + L G A Sbjct: 278 PPYSTKWEG-----KDNALLINDERFNKAGVLAPTSKADLAFVMHSLSWLSEK----GSA 328 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIV ++ A E EIR++++E + ++ +++L +LFF T+IA + +L KT+ Sbjct: 329 AIVCFPGVMYRSGA---EKEIRKYIIEENFVDCVISLAPNLFFGTSIAVCILVLRKNKTD 385 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 + INA + + + N + +++ + IL +Y R+ + Sbjct: 386 KNT---LFINANEEFIKVTN----KNMLSKENLENILKLYKDRKEVPH---------LTK 429 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + + + + L + ++ + L++ Sbjct: 430 LVSIEEIAKNDYNLSVSSYVEVKDTREIIDIKVLNKE 466 >gi|145631522|ref|ZP_01787290.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae R3021] gi|144982867|gb|EDJ90384.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae R3021] Length = 283 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 129/281 (45%), Gaps = 30/281 (10%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F E +E A + TPR+V+ L T L+ DP I T+YDP CG+GG LT++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241 Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIR 262 N + + + G+E ET+A+C + M+I+ Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIK 282 >gi|329123370|ref|ZP_08251934.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116] gi|327470952|gb|EGF16407.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116] Length = 443 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 78/453 (17%), Positives = 156/453 (34%), Gaps = 56/453 (12%) Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP- 151 + + I ++ K + + L + FS T Sbjct: 32 AKLIDDAF-DAIEKDNEKLKGVLQRIS-----GYAVNEDTLRGLIILFSDTHFTRPTYNG 85 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 86 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 134 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 135 YSGRMYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 191 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NPPF + V+ R+ Sbjct: 192 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNISDWWSESLVD-------DPRW 238 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 239 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 292 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 293 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 347 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I D + + S + + + + F+L E + Sbjct: 348 TADDIAKIADTLHTWQK---SDGYENQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 404 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 405 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 437 >gi|2581810|gb|AAC25972.1| N6 adenine methylation (M) subunit homolog [Mycoplasma pulmonis] Length = 520 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 103/498 (20%), Positives = 185/498 (37%), Gaps = 70/498 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ L + K + L + T++ ++ F + L E +E+ S Sbjct: 2 SNSKELIAVVKKICDQLRSKMEVTEYRDYVMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61 Query: 66 NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109 D + + F+ +YS + N +E I S + Sbjct: 62 EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121 Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 K +F + DFS+ I EK + I + + + L D V N Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIEEINTLNLSMDEVD--HFGN 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+L+ F S+ + A +F TP V L ++ I YDP CG+G Sbjct: 179 TYEYLLSEFASDAGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L N V +GQE++ T+ + ++R + +++ Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276 Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 G TL L F ++NPPF +KW ++ + N P L S Sbjct: 277 SGDTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYAD 331 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL H+ + G A V S L E +IR+++++ + I+ I+ LP Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRISPK-AEEDIRKYIIDKNYIDTIIFLPP 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T I + + + K + ++ +INAT + + + K+ ++D+ +I Sbjct: 388 NLFYNTGIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442 Query: 456 YVS-RENGKFSRMLDYRT 472 + RE FS+ + Y Sbjct: 443 WKEKREEENFSKYISYED 460 >gi|282917067|ref|ZP_06324825.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus D139] gi|282319554|gb|EFB49906.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus D139] Length = 460 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 109/489 (22%), Positives = 195/489 (39%), Gaps = 50/489 (10%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 E R ++ + + G I+ + T ++ + L +T R S + S Sbjct: 15 EEYREDLKAELIDQVGYFIEPQDLFSAM-IREIETQDFDIEHL-ATAIRKVETSTLGEES 72 Query: 109 DN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +N +F D D SST E+ L+ K+ N + + ++ + YE LI Sbjct: 73 ENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIG 132 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 133 RFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG 184 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 K + GQE T+ + ML+ + R + +I+ TL Sbjct: 185 ----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLEN 229 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F G F ++NPP+ KW D E +G L S F+ H+ + Sbjct: 230 PAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVH 284 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403 L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T+I Sbjct: 285 YLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSI 337 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462 T + + +K ++ V I+A++ + GK + ++D Q +I++ Y +E Sbjct: 338 PTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKETID 391 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 K+S + + P R ++ L+ K + + Sbjct: 392 KYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAY 450 Query: 523 MQQIYPYGW 531 ++++ Sbjct: 451 LKELGVLKD 459 >gi|52548302|gb|AAU82151.1| type I restriction-modification system DNA methylase [uncultured archaeon GZfos11A10] Length = 704 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 103/587 (17%), Positives = 209/587 (35%), Gaps = 83/587 (14%) Query: 11 LANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EKYL 60 + +W A+ L ++ ++ ++ LR + + + Sbjct: 10 IEKRLWGAADTLRANSNYASNEYFLPVMGLVFLRHAYSRYLAVKDGIEANLPTRDGKTRA 69 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + F + S + +ES I DN + + ++ Sbjct: 70 LLKEDFSRQSAIFLQPNAQFDHLVALPDSEDRAKAIIWAMES-IEGDYDNLRGVLPKSEY 128 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 +L ++ + + V V IYE+ + +F + + +F TP Sbjct: 129 QEL-----DNDVLGQLLRTLN--PDELKRVSGDVFGRIYEYFLTQFADQKAHDGGEFFTP 181 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V L +L T+ DP CG+GG + VA+ G L Sbjct: 182 ISLVSLIAHVLDPE-----------SGTVLDPACGSGGMFVQSARIVAEHG--QNPTDRL 228 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNP 299 G E T + + + LE D IQ+ T +D + + ++NP Sbjct: 229 TFRGLEKNATTIRLAKMNLAVHGLEGD--------IQKAITYYEDPHELVGKADFVMANP 280 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGG 353 PF K R GLP K+S+G+ +++ + + L Sbjct: 281 PFNVDE-------IDADKVKTDVRLPFGLPGVNKKDKVSNGNYVWISYFYSYLNEK---- 329 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+SS AG GE+++R+ L+E ++ +VA+ ++ F+ + LW L+ Sbjct: 330 GRAGFVMSSQA---SSAGGGEAKVRQKLVETGDVDVMVAIRSNFFYTRTVPCELWFLNRD 386 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSRENGKFSRMLDY 470 K E R KV +I+A +++ R +K + +Q++ I+ +Y + + LD Sbjct: 387 KPEAHRDKVLMIDARNIY---RKVTRKIYDFSPEQQQNLLAIVWLYRGQTE----KYLDL 439 Query: 471 RTFGYRRIKVLRPLRMSFILDKTG------------LARLEADITWRKLSPLHQSFWLDI 518 + GY R + D++G L L + + + + ++ Sbjct: 440 VS-GYCRHTLDEGAGCFSTEDESGETIQPLPDFAAALDTLTSTLQPFLSTLADNAAHAEV 498 Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 K ++ + + ++++ EA + K + + ++ Sbjct: 499 QKELVDALPAFHADVEAFQQALTEQEAAWKRQKTTNGDLKQAVDCLA 545 >gi|496158|gb|AAA65633.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis] Length = 520 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 105/498 (21%), Positives = 186/498 (37%), Gaps = 70/498 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ L + K + L + T++ I+ F + L E +E+ S Sbjct: 2 SNSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61 Query: 66 NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109 D + + F+ +YS + N +E I S + Sbjct: 62 EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121 Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 K +F + DFS+ I EK + I K + + L D V N Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIKEINTLNLSMDEVD--HFGN 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+L+ F S+ + A +F TP V L ++ I YDP CG+G Sbjct: 179 TYEYLLSEFASDTGKKAGEFYTPSKVSELLVKIV--------SHGKNKINKAYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L N V +GQE++ T+ + ++R + +++ Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276 Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 G TL L F ++NPPF +KW ++ + N P L S Sbjct: 277 SGDTLINPLHIEEEGSFDCIVANPPFSQKWNPTQELSKDRRYNSY-----PSLAPKSYAD 331 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL H+ + G A V S L E +IR+++++ + I+ I+ LP Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRKSPK-AEEDIRKYIIDKNYIDTIIFLPP 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T+I + + + K + ++ +INAT + + + K+ ++D+ +I Sbjct: 388 NLFYNTSIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442 Query: 456 YVS-RENGKFSRMLDYRT 472 + RE FS+ + Y Sbjct: 443 WKEKREEENFSKYISYED 460 >gi|15829149|ref|NP_326509.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis UAB CTIP] gi|14090093|emb|CAC13851.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M1 [Mycoplasma pulmonis] Length = 520 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 105/498 (21%), Positives = 186/498 (37%), Gaps = 70/498 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ L + K + L + T++ I+ F + L E +E+ S Sbjct: 2 SNSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61 Query: 66 NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109 D + + F+ +YS + N +E I S + Sbjct: 62 EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121 Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 K +F + DFS+ I EK + I K + + L D V N Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIKEINTLNLSMDEVD--HFGN 178 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE+L+ F S+ + A +F TP V L ++ I YDP CG+G Sbjct: 179 TYEYLLSEFASDTGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAYDPACGSG 230 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L N V +GQE++ T+ + ++R + +++ Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276 Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 G TL L F ++NPPF +KW ++ + N P L S Sbjct: 277 SGDTLINPLHIEEEGSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYAD 331 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL H+ + G A V S L E +IR+++++ + I+ I+ LP Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRKNPK-AEEDIRKYIVDENYIDTIIFLPP 387 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +LF+ T+I + + + K + ++ +INAT + + + K+ ++D+ +I Sbjct: 388 NLFYNTSIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442 Query: 456 YVS-RENGKFSRMLDYRT 472 + RE FS+ + Y Sbjct: 443 WKEKREEENFSKYISYED 460 >gi|282915751|ref|ZP_06323521.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus D139] gi|282320380|gb|EFB50720.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus D139] Length = 460 Score = 244 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 195/489 (39%), Gaps = 50/489 (10%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 E R ++ + + G I+ + T ++ + L +T R S + S Sbjct: 15 EEYREDLKAELIDQVGYFIEPQDLFSAM-IREIETQDFDIEHL-ATAIRKVETSTLGEES 72 Query: 109 DN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +N +F D D SST E+ L+ K+ N + + ++ + YE LI Sbjct: 73 ENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIG 132 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 133 RFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG 184 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 K + GQE T+ + ML+ + R + +I+ TL Sbjct: 185 ----------KETKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLEN 229 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F G F ++NPP+ KW D E +G L S F+ H+ + Sbjct: 230 PAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVH 284 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403 L+ G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T+I Sbjct: 285 YLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSI 337 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462 T + + +K ++ V I+A++ + GK + ++D Q +I+D Y +E Sbjct: 338 PTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETID 391 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 K+S + + P R ++ L+ K + + Sbjct: 392 KYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINEY 450 Query: 523 MQQIYPYGW 531 ++++ Sbjct: 451 LKELGVLKD 459 >gi|323441216|gb|EGA98897.1| type I restriction-modification system, M subunit [Staphylococcus aureus O46] Length = 355 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 101/390 (25%), Positives = 170/390 (43%), Gaps = 48/390 (12%) Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICK 138 T ++ + L +T R S + S+N +F D D SST E+ L+ K+ Sbjct: 7 TQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMV 65 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 N + + ++ + YE LI RF + + A +F TP+ V + ++ D D Sbjct: 66 NLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD-- 123 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 +R +YDPTCG+G L K + GQE T+ + Sbjct: 124 ------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMN 167 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ML+ + R + +I+ TL F G F ++NPP+ KW D E + Sbjct: 168 MLLHDV-----RYENFDIRNDDTLENPAFLGTTFDAVIANPPYSAKWTADSKFENDERFS 222 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 G L S F+ H+ + L+ G A+VL LF G A E IR Sbjct: 223 GY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIR 270 Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+A++ + Sbjct: 271 RYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK---- 324 Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSR 466 GK + ++D Q +I++ Y +E K+S Sbjct: 325 GKNQNHLSDTQVERIINTYKGKETIDKYSY 354 >gi|194324118|ref|ZP_03057892.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida FTE] gi|194321565|gb|EDX19049.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida FTE] Length = 345 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 62/386 (16%), Positives = 128/386 (33%), Gaps = 50/386 (12%) Query: 1 MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + + + +WK A+ L + ++ V+L L+ + + E + + + Sbjct: 1 MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYTEL--QS 58 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112 + E F+ ++ S L + + I +++ K Sbjct: 59 EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171 + + + L ++ I + + V+ +++E+ + F Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP+ VV L +L ++DP CG+GG + V Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE T +C + IR ++S + S+ + D + Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF + R+ G P + + ++ H L Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPAGNANYAWIQHFLYHLAPT-- 323 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEI 377 G A VL+ L + SGE + Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDT 345 >gi|158421618|ref|YP_001527845.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300] gi|158342861|gb|ABW35147.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300] Length = 610 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 98/490 (20%), Positives = 182/490 (37%), Gaps = 69/490 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W A + G+ + F +LP L+RL + + E+Y + Sbjct: 94 TTKPMEQMLWDAACSIRGEKEAAKFKDYLLPLLFLKRLSDVFDDEIERLAEEYGDRATAL 153 Query: 67 IDLESFVKVAGYSFYNT-----------SEYSLSTLG------STNTRNNLESYIAS--- 106 ES + FY + + +L + + Sbjct: 154 EIAES--DHSLLRFYLPPEARWTVISGREPFDWPRDVQGRSTAPRDIGEHLTRAVRAVVK 211 Query: 107 FSDNAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHL 162 + + + + DF R L + + FS V + YE+L Sbjct: 212 HNPSLSGVIDVVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYL 271 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R+F + A +F TP +V L +L P T +D CG+ G L Sbjct: 272 LRKFAEGSGQSAGEFFTPTEVGFLMAHIL----------RPKPGETCHDYACGSAGLLIK 321 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + ++P GQEL+ E++AV +I +E + +G T+ Sbjct: 322 LQLVARELDPTSRVPLK--LSGQELQAESYAVAQMNAIIHDMEVEL--------ARGDTM 371 Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSM 336 F ++ ++NP + + + D + RF G G Sbjct: 372 INPKFRNADGSIRQHDIVVANPMWNQSFAPDI------FAHDPFDRFRTAGGITSGKGDW 425 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVAL 393 +L H + GRAA+VL + + G E + IR+W +E DLI+ ++ L Sbjct: 426 AWLQHTLACMNDH----GRAAVVLDTGAVTRGSGSKNEDKERTIRKWFVEQDLIDGVILL 481 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P +LF+ T A + +L+ RK R+GK+ L+NA+ + ++G+ + + ++ R + Sbjct: 482 PENLFYNTTAAGVIVVLNKRKPAARKGKIVLLNASRHF----SKGRPKNYLPEEDLRPLA 537 Query: 454 DIYVSRENGK 463 +Y+ E Sbjct: 538 AMYLKGEPVD 547 >gi|229548133|ref|ZP_04436858.1| possible adenine specific DNA-methyltransferase [Enterococcus faecalis ATCC 29200] gi|256958291|ref|ZP_05562462.1| type I restriction enzyme M protein [Enterococcus faecalis DS5] gi|257091258|ref|ZP_05585619.1| type I restriction-modification system M subunit [Enterococcus faecalis CH188] gi|307274413|ref|ZP_07555597.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX2134] gi|312905317|ref|ZP_07764432.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0635] gi|229306739|gb|EEN72735.1| possible adenine specific DNA-methyltransferase [Enterococcus faecalis ATCC 29200] gi|256948787|gb|EEU65419.1| type I restriction enzyme M protein [Enterococcus faecalis DS5] gi|257000070|gb|EEU86590.1| type I restriction-modification system M subunit [Enterococcus faecalis CH188] gi|295114355|emb|CBL32992.1| type I restriction system adenine methylase (hsdM) [Enterococcus sp. 7L76] gi|306508923|gb|EFM78009.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX2134] gi|310631341|gb|EFQ14624.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0635] gi|315036579|gb|EFT48511.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0027] gi|315145850|gb|EFT89866.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX2141] gi|315162496|gb|EFU06513.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0645] gi|315578596|gb|EFU90787.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX0630] Length = 530 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 87/538 (16%), Positives = 182/538 (33%), Gaps = 68/538 (12%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73 W G T + I + L V E + N ++ Sbjct: 12 WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQN-PSKALE 70 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119 + Y + + F+ + + IF+ Sbjct: 71 YMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130 Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F S +A ++ + + S E D +S+IYE+L+ +F + ++ Sbjct: 131 FDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATVLASDMGQ 189 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP+++ ++ +L + ++YDPT G+G L +++ + I Sbjct: 190 YYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASYMKNSHKRGMI 243 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------- 289 GQE + + + +++ +E + I TL D G Sbjct: 244 K----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDGVVDGKDN 294 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLE 347 + F ++NPP+ W + R+ G+ + FL+H L Sbjct: 295 PRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYAFLLHCLYHL- 345 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR AI+L LF G A E IR+ L++ IE ++ P LF T+I + Sbjct: 346 ---EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCV 399 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 IL +T + ++A+ + ++ K+ + + +I+D V R+ + +S Sbjct: 400 LILRKNRTAS---DILFVDASREFEKLK----KQNHLRPEDVDKIVDTVVQRKEIEKYSH 452 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + P + ++ + + + + + + ++L + Sbjct: 453 LATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEAELLAMLDD 510 >gi|294155919|ref|YP_003560303.1| type I restriction-modification system, methyltransferase [Mycoplasma crocodyli MP145] gi|291600214|gb|ADE19710.1| type I restriction-modification system, methyltransferase [Mycoplasma crocodyli MP145] Length = 523 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 106/544 (19%), Positives = 203/544 (37%), Gaps = 67/544 (12%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNIDL 69 L N +W A + G ++F +V L R + + Y +I++ Sbjct: 13 LHNKLWDLANKVRGKINASEFQQVFLGILFYRFISEYFVDKVEENGLKDYSNKNDDDIEV 72 Query: 70 ESFVKVAGY--SFYNTSEYSLSTLG-----STNTRNNLESYIASF--SDNAKA---IFE- 116 K F+ + L + N ++ S S N I E Sbjct: 73 LKMKKDLPDLIGFFIKPSHLFVNLSKDVHLNENINIDINDIFNSIVSSANINDSENILEG 132 Query: 117 -----------DFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLI 163 + + ++ +K ++ K + I+ D + YE+LI Sbjct: 133 TFPNFNNLNFLNINNNNENQLKKKNNIITKTILTVAEIDFGSKFDDHSIDTFGDAYEYLI 192 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + +F TP++V + L + I ++YDPTCG+G L Sbjct: 193 GMYAASGGKSGGEFFTPQEVSKFLANVTLVYK------NSKDIYSVYDPTCGSGSLLLKF 246 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + P L GQE P T ++ ++I +E D +++ G TL+ Sbjct: 247 KKIL--------NNPYLHFSGQESNPTTFSLSKMNLIIHGVEFDKI-----DLKCGDTLN 293 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMH 341 L K+F +SNPP+ WE E RF P L S+ + F++H Sbjct: 294 DPLHLEKKFDVVVSNPPYSIAWEDY-----NETSIRSDERFNIVPTLMPKSNSDLGFVLH 348 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L+ G AAIV + E IR++L+EN+ IEAI+ +P ++FF T Sbjct: 349 SLYSLDKK----GVAAIVCFPGMFYRDN--ESEVNIRKYLVENNFIEAIIVMPNNMFFGT 402 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I+ + +L+ K + + ++A+ + K+ +++ +L I R++ Sbjct: 403 SISVNIMVLNKNKQTK---DILFVDASSHFYKD----GKKNKMSEQNIENVLKIVKDRKD 455 Query: 462 GKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 + S+ + F + + + K + + + +++ +Q I K Sbjct: 456 IENVSKPVANEFFLDKSVNLSPDRFFKKEEVKEEIDIINLNKQLNEITSKNQKLREQIKK 515 Query: 521 PMMQ 524 + + Sbjct: 516 LIFE 519 >gi|300853531|ref|YP_003778515.1| restriction-modification system [Clostridium ljungdahlii DSM 13528] gi|300433646|gb|ADK13413.1| restriction-modification system [Clostridium ljungdahlii DSM 13528] Length = 901 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 178/485 (36%), Gaps = 78/485 (16%) Query: 22 LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81 + + ++ IL F + L E + R++ L E VK A + Sbjct: 1 MRSKIEANEYKDFILGFIFYKYLS---EKEVAFFRKERLTDADIEKVTEDDVKYASHVRE 57 Query: 82 NTSEY--------SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA--- 130 N + + G+ +N+ +++F N ++ F L+ Sbjct: 58 NLGYFIAYENLFSTWLKKGNDFDISNVRDALSAFDRNIDDVYRKV-FEKIFNTLQTGLSK 116 Query: 131 ------------GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 L K+ + V+ IYE+LI F + + A +F Sbjct: 117 LGETAQAQTKAVKSLLKLIRKI----PMDGKQDYDVLGFIYEYLISMFAANAGKKAGEFY 172 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L + ++ + +YDPT G+G L + N A Sbjct: 173 TPHEVSVLMSEIIAEHLKNR------KQIKIYDPTSGSGSLLINIGNSAAKFIDGENKID 226 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------TGKRF 292 + QEL+ T+ + +++R + N++ G TL D K + Sbjct: 227 ---YYAQELKENTYNLTRMNLVMRGISPANI-----NVRNGDTLEDDWPFFEDTDKDKTY 278 Query: 293 HYC-----LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + +SNPP+ +KW+ + +K G+ S FL+H L+ Sbjct: 279 KFIPVDAVVSNPPYSQKWDPSDKEFDPRYKY-------YGVAPKSKADYAFLLHDLYHLK 331 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G IVL LF G E +IR L+E + I+AI+ LP ++FF T I T + Sbjct: 332 DD----GIMTIVLPHGVLFRGGE---EGKIREKLIEKNRIDAIIGLPPNIFFGTGIPTII 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 +L K V +I+A+ + + K + ++I D SRE+ + +S Sbjct: 385 MVL---KRIRPTSDVLIIDASKGFEKV----GKNNKLRACDIKKIADTVKSRESIEKYST 437 Query: 467 MLDYR 471 ++ Sbjct: 438 LVSKE 442 >gi|313678340|ref|YP_004056080.1| type I restriction-modification system, M subunit [Mycoplasma bovis PG45] gi|312950090|gb|ADR24685.1| type I restriction-modification system, M subunit [Mycoplasma bovis PG45] Length = 892 Score = 243 bits (620), Expect = 9e-62, Method: Composition-based stats. Identities = 113/629 (17%), Positives = 220/629 (34%), Gaps = 104/629 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL--------------ECALE 49 + L + IW A L + ++ +L + L L+ Sbjct: 3 NKITKEKLGSKIWDAANQLRDKLEPHEYKDYVLGLVFYKFLCEKQTNYLIKNWITSDQLK 62 Query: 50 PTRSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95 S + Y + + +D + F + S S L + N Sbjct: 63 YLDSKYLDNESNFNAIVSGDAYKSDYENLVDAKKDCIDENGYFIDYSNLFSSWLENKNEF 122 Query: 96 ----TRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIE 144 + ++ S +D K++F+D F +++L E+ + + + I Sbjct: 123 NIQKFQLAFNNFNNSVNDEHKSLFKDLFVKFERDLSKLGSDTNEQTKKISSLLDIINDIP 182 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 V+ IYE+LI RF S + A +F TP V L + ++ Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHKVSELMSKIIAYHLKDR------ 234 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + +YDPT G+G L + + + + QEL+ E + ++++ + Sbjct: 235 EVIKVYDPTSGSGSLLITIGHEFKKYNNGDSP---VSYYAQELKAEVFNLTRMNLIMKNI 291 Query: 265 ESDPRRDLSKNIQQGSTLSKDL--FTGKRF--------HYCLSNPPFGKKWEKDKDAVEK 314 + G TL +D F F +SNPP+ +KW + +++ Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFEDNDFSSYKHLSVDAVVSNPPYSQKWNSKEHSLDP 346 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + G+ S FL+H ++ G AIVL LF G E Sbjct: 347 RYVE-------YGIAPESKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN---SE 392 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +IR+ L++ I+AI+ LP ++F+ T I T + IL ++E+ + ++A+ L+ Sbjct: 393 GQIRKNLIQKQQIDAIIGLPVNMFYGTEIPTIIMILKKHRSEK---DILFVDASKLYVK- 448 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 G K+ ++I D+ R + RR+ + ++ + L+ + Sbjct: 449 ---GDKKNEFTKSHVKKIADVVNHRIEIEN---------FSRRVSLDEIVQNDYNLNISR 496 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 ++ + + + + + +G + K N+ ++K K Sbjct: 497 Y--IDNFKRQEQYDLYSIMYGGISREELAKLDKFFGLFTGLKDKLFKLNDNNYYELKIPK 554 Query: 555 SFIVAFINA---FGRKDPRADPVTDVNGE 580 I + IN D GE Sbjct: 555 EDINSTINGERSVTEYKDS----FDKKGE 579 >gi|300861380|ref|ZP_07107466.1| type I restriction-modification system, M subunit [Enterococcus faecalis TUSoD Ef11] gi|300849172|gb|EFK76923.1| type I restriction-modification system, M subunit [Enterococcus faecalis TUSoD Ef11] Length = 530 Score = 242 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 87/538 (16%), Positives = 182/538 (33%), Gaps = 68/538 (12%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73 W G T + I + L V E + N ++ Sbjct: 12 WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQN-PSKALE 70 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119 + Y + + F+ + + IF+ Sbjct: 71 YMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130 Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F S +A ++ + + S E D +S+IYE+L+ +F + ++ Sbjct: 131 FDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATVLASDMGQ 189 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP+++ ++ +L + ++YDPT G+G L +++ + I Sbjct: 190 YYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASYMKNSHKRGMI 243 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------- 289 GQE + + + +++ +E + I TL D G Sbjct: 244 K----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDGVVDGKDN 294 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLE 347 + F ++NPP+ W + R+ G+ + FL+H L Sbjct: 295 PRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYAFLLHCLYHL- 345 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR AI+L LF G A E IR+ L++ IE ++ P LF T+I + Sbjct: 346 ---EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCV 399 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 IL +T + ++A+ + ++ K+ + + +I+D V R+ + +S Sbjct: 400 LILRKNRTAS---DILFVDASREFEKLK----KQNHLRPEDVDKIVDTVVQRKEIEKYSH 452 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + P + ++ + + + + + + ++L + Sbjct: 453 LATLDEIKENDYNLNIPRYVDTYEEELPVDLVALNNDIKNTNEEIKKVEAELLAMLDD 510 >gi|332661883|ref|YP_004451353.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] gi|332337380|gb|AEE54480.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] Length = 606 Score = 242 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 92/487 (18%), Positives = 179/487 (36%), Gaps = 72/487 (14%) Query: 4 FTGSA-ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 T + L + +W A+ L + K +++ IL LR + + + + Sbjct: 1 MTATQLKELEDTLWSAADKLRAESNLKSSEYATPILGLIFLRFASIRYQRVKPEIEAELK 60 Query: 61 AFGGSNID-LESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNAK 112 A S + E+ + +A FY E L + ++ I + Sbjct: 61 AQANSRMQQPEAEIAIAKCGFYLPPEAQYDYLLSLPEEADIAKAIKHAMEAIEQYKPELL 120 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 ++ E L + K F+ I P+ V +YE+ + F + Sbjct: 121 DSLPKDEYFKLYTT-EDRSLPKSLLKIFANI---PEDASGDVFGKVYEYFLAEFALAEGQ 176 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADC 230 G +F TP VV L ++ T++DP CG+GG + V Sbjct: 177 GGGEFFTPTSVVKLMVEVI-----------EPYQGTIFDPACGSGGMFVQSSYFVDRRRA 225 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 H L+ +G E +T + + + L + I+ ++ +D + Sbjct: 226 ELHDTDTKDLMVYGVEKTADTVKLARMNLAVNGLRGE--------IRPANSYYEDPYDSL 277 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP----------------KIS 332 RF Y L+NPPF D + +H+ RF G+P + Sbjct: 278 GRFDYVLANPPFNVD---DVNLDRVKHQ----PRFNAYGIPQNKGKSSKKGQDKDVNTVP 330 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + L++ A L+ GRAA+V+++S A + E++IR+ L+ + +I+A++ Sbjct: 331 NANYLWINLFATSLKPT----GRAALVMANSA---SDARNSEADIRQNLIRSGVIDAMLT 383 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP ++F+ + LW + K+ ++A + + + R + + I Sbjct: 384 LPKNMFYTVTLPATLWFFDKSRAGTEP-KILFVDARNTFRQVTRA---LREFTPEHIQNI 439 Query: 453 LDIYVSR 459 I+ Sbjct: 440 AVIFRLF 446 >gi|91775530|ref|YP_545286.1| XRE family transcriptional regulator [Methylobacillus flagellatus KT] gi|91709517|gb|ABE49445.1| transcriptional regulator, XRE family [Methylobacillus flagellatus KT] Length = 519 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 104/518 (20%), Positives = 185/518 (35%), Gaps = 82/518 (15%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 +W A + G+ F +LP L+RL + + E+Y + ES Sbjct: 2 EQMLWDAACSIRGEKDAAKFKDYLLPLLFLKRLSDVFDDEIERLAEEYGDRATALEIAES 61 Query: 72 FVKVAGYSFYNTSEYSLSTL-----------------GSTNTRNNLESYIASF---SDNA 111 + FY E + + + +L + + + Sbjct: 62 --DHSLLRFYLPPEARWAVISGRESFDWPLDDRGRPTAPRDIGEHLTKAVRAVVKQNPTL 119 Query: 112 KAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFG 167 + + DF R L + + FS V + YE+L+R+F Sbjct: 120 SGVIDVVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFA 179 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + A +F TP +V L +L P T +D CG+ G L Sbjct: 180 EGSGQSAGEFFTPTEVGFLMAHIL----------RPKPGETCHDYACGSAGLLIKLQLVA 229 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + ++P GQEL+ E++AV +I +E + +G T+ F Sbjct: 230 RELDPTSRVPLK--LSGQELQAESYAVAQMNAIIHDMEVEL--------ARGDTMINPKF 279 Query: 288 TGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMH 341 ++NP + + + D N RF G G +L H Sbjct: 280 REASGKIRGHDIVVANPMWNQPFAADL------FANDPFDRFRTAGGITSGKGDWAWLQH 333 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLF 398 + GRAA+VL + + G E + IR+W +E DLI+ ++ LP +LF Sbjct: 334 TLACMNDH----GRAAVVLDTGAVTRGSGSKNEDKERTIRKWFVEQDLIDGVILLPENLF 389 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T A + +LS RK R+GK+ L+NA+ + +G+ + + ++ R + +Y+ Sbjct: 390 YNTTAAGVIVVLSRRKPAARKGKIVLLNASRRF----KKGRPKNYLPEEDIRPLAAMYLK 445 Query: 459 RE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 E G+ + I + + L + Sbjct: 446 GEPVEGELAV-----------ITTEQAREADYNLSPSR 472 >gi|299822015|ref|ZP_07053902.1| possible site-specific DNA-methyltransferase (adenine-specific) [Listeria grayi DSM 20601] gi|299816643|gb|EFI83880.1| possible site-specific DNA-methyltransferase (adenine-specific) [Listeria grayi DSM 20601] Length = 531 Score = 242 bits (618), Expect = 2e-61, Method: Composition-based stats. Identities = 91/555 (16%), Positives = 187/555 (33%), Gaps = 66/555 (11%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFGGSNIDLES 71 N +W G T + I + L +V + S S Sbjct: 9 NKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATQWLESVLRGESWESIYSQDPARS 68 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFS--------DNAKAIFED 117 + Y + + + + F+ + + IF+ Sbjct: 69 LDYMKKNLGYAIRPNNFFSDWKKAIEEDQFNIGLMTDTFGHFNQQIAFEAKSDFEGIFDG 128 Query: 118 FDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F S +A ++ + + S E +S+IYE+L+ +F + ++ Sbjct: 129 MRFDSADLGANAQARASVMISMIEVLSAPEFDLSGGD-DAISDIYEYLVAKFATVLASDM 187 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TP+++ + +L + ++YDPT G+G L +++ + Sbjct: 188 GQYYTPKEISDVMAQILTFGREEA------EHFSIYDPTVGSGSLLLTTASYMKNSHKRG 241 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289 I GQE + + + +++ +E + I TL D G Sbjct: 242 MIK----YFGQEKDATPYRLSRMNLMMHGVEYNDVS-----INHADTLKSDWPDGVVEGK 292 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANK 345 + F ++NPP+ W + R+ G+ + FL+H Sbjct: 293 DNPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVAPKTKADYAFLLHCLYH 344 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L GR AI+L LF G A E IR+ L++ IEA++ P LF T+I Sbjct: 345 L----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIEAVIGFPDKLFLNTSIPV 397 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + IL + E V I+A+ + ++N ++ + + +I+D V R+ + + Sbjct: 398 CVLILRKNRVES---DVLFIDASKDFEKMKN----QKRLRPEDVAKIVDTVVHRKEMEKY 450 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + P + ++ + +E K++ + + L + + Sbjct: 451 AHIATLDEIKENDYNLNIPRYVDTFEEEEPIDIVEVSQEITKINGEIKQAESEFLSMLDE 510 Query: 525 QIYPYGWAESFVKES 539 + Sbjct: 511 LAVTPETKDLIEAAK 525 >gi|226223147|ref|YP_002757254.1| HsdM type IC modification subunit [Listeria monocytogenes Clip81459] gi|254993315|ref|ZP_05275505.1| HsdM type IC modification subunit [Listeria monocytogenes FSL J2-064] gi|225875609|emb|CAS04312.1| Putative HsdM type IC modification subunit [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 529 Score = 242 bits (618), Expect = 2e-61, Method: Composition-based stats. Identities = 95/571 (16%), Positives = 194/571 (33%), Gaps = 74/571 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45 M T + W G T + I + L Sbjct: 1 MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56 Query: 46 --CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 G I F + +T +++ + T T N + Sbjct: 57 WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115 Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + + + IF+ F S +A ++ + + S E + +S+IYE Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ +F + ++ + TP+++ ++ +L + + K +++DPT G+G L Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +++ + ++ +GQE + + + +++ +E + NI Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278 Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331 TL D G + F ++NPP+ W + R+ G+ Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + FL+H L GR AI+L LF G E IR+ L++ IEAI+ Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAII 383 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P LF T I + IL + E V ++A+ + I+ K+ + + + Sbjct: 384 GFPEKLFLNTPIPVCVVILRKNRIES---DVLFVDASKGFEKIK----KQNNLRSEDVEK 436 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D ++R+ + +S + + P + ++ + + L+ Sbjct: 437 IVDTVINRKEIEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVALNAD 496 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + D L + + E Sbjct: 497 IKKAETDFLGLLDELAVTADTKEIIEATKAV 527 >gi|116871898|ref|YP_848679.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740776|emb|CAK19896.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 529 Score = 242 bits (618), Expect = 2e-61, Method: Composition-based stats. Identities = 92/559 (16%), Positives = 190/559 (33%), Gaps = 70/559 (12%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-----------------CALEPTRSAV 55 +W G T + I + L Sbjct: 9 AKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEKWESVYSQDSVKA 68 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 G I F + +T +++ + T T N + + + + + IF Sbjct: 69 LNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQVAFEAKN-DFEGIF 126 Query: 116 EDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + F S +A ++ + + S E + +S+IYE+L+ +F + ++ Sbjct: 127 DGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYLVAQFATVLAS 185 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 + TP+++ ++ +L + + K +++DPT G+G L +++ Sbjct: 186 DMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLTTASYMK---- 235 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289 + ++ +GQE + + + +++ +E + NI TL D G Sbjct: 236 NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTLESDWPDGVVD 290 Query: 290 -----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLA 343 + F ++NPP+ W + R+ G+ + FL+H Sbjct: 291 GKDTPRMFDVVMANPPYSAHW--------NNKDREDDPRWREYGVSPKTKADYAFLLHCL 342 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L GR AI+L LF G E IR+ L++ IEAI+ P LF I Sbjct: 343 YHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAIIGFPEKLFLNAAI 395 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462 + IL + E V I+A+ + + K+ + + +I+D ++R+ Sbjct: 396 PVCVVILRKNRIES---DVLFIDASKEFEKTK----KQNSLRSEDVDKIVDTVINRKEIN 448 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 K+S + + P + ++ + + L+ + D L + Sbjct: 449 KYSHVATLDEIKENDYNLNIPRYVDTFEEEETIDLVALGNEMVALNADIKKAETDFLGLL 508 Query: 523 MQQIYPYGWAESFVKESIK 541 + + Sbjct: 509 DELAVTTDTKDIIEATKAV 527 >gi|85711477|ref|ZP_01042535.1| N-6 DNA methylase [Idiomarina baltica OS145] gi|85694629|gb|EAQ32569.1| N-6 DNA methylase [Idiomarina baltica OS145] Length = 520 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 88/458 (19%), Positives = 162/458 (35%), Gaps = 63/458 (13%) Query: 15 IWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72 +W A+ LW + K +F +L L+ + + + Sbjct: 10 LWAAADQLWANTGLKPAEFSAPVLGLIFLKYADKKYSAAEEKLGPVGSGGRRKVSKDDYL 69 Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE---K 129 A + S L S +N+ I + E+ D + R + Sbjct: 70 ---AEGVIFLPETARFSHLLSLTEGDNIGKAINDAMKAIED--ENPDLKGALPRTYTRLE 124 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 +L ++ K + P + +YE+ + F + + F TP +V L Sbjct: 125 NWVLQELLKQLA-----PVDLSGDAFGKVYEYFLGNFALKEGQKGGVFYTPESIVKLIVE 179 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 ++ ++DP CG+GG + + V + G E + Sbjct: 180 II-----------EPYHGRIFDPACGSGGMFVHSADFVERHHKTAMDE--ISIFGTEKDQ 226 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT------GKRFHYCLSNPPFGK 303 T + + + L D ++ +T +D F + ++NPPF Sbjct: 227 TTVNLNKMNLAVHGLSGD--------VRVSNTYYEDPHGAVYKNGDGFFDFVMANPPFNV 278 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 V+KE G RF G+PK + + L++ L+ GRA V+++S Sbjct: 279 S------GVDKERLEG-DPRFPFGVPKTDNANYLWIQLFYASLKPT----GRAGFVMANS 327 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKV 422 G A E +R+ L+E+ ++ IV++ + F+ + LW K+E ERR KV Sbjct: 328 A---GDARGSEQVVRQKLIESGAVDVIVSVGPNFFYTVTLPCTLWFFDRAKSETERRDKV 384 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV 457 I+A ++ I R +Q I+ +Y Sbjct: 385 LFIDARHIYNQIDRA---HRDWLPEQVEFLANIVRLYR 419 >gi|119357510|ref|YP_912154.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] gi|119354859|gb|ABL65730.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] Length = 662 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 104/505 (20%), Positives = 173/505 (34%), Gaps = 96/505 (19%) Query: 2 TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EK 58 + T +AA L +W A+ L K ++ +L L + R+ + K Sbjct: 8 EKDTATAA-LEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAK 66 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 GS +D + G Y + E L + N+ I + Sbjct: 67 SSTRRGSRVDDPAAYHAEG-VLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQL 125 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + + L + LL ++ K S I P ++ IYE+ + F Sbjct: 126 AGVLPKTYY------LFDSPLLKQLLKKVSEI---PSSMDYDAFGRIYEYFLGEFAMSEG 176 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +G +F TP +V L T ++ + DP CG+GG + VA Sbjct: 177 QGGGEFYTPVSIVRLLTEVI-----------EPYHGRILDPACGSGGMFVSSARFVAQH- 224 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290 L HG E ET +C + + LE + N + D Sbjct: 225 -KQNPSAELSIHGIEKTDETGRLCRLNLAVHGLEGRIMHGGNVN-----SYYDDPHDATG 278 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLE 347 F + L+NPPF +AV+KE +G RF GLP+ + + L++ + L Sbjct: 279 NFDFVLANPPFNV------NAVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSAL- 331 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N GRA V+++S A S E EIRR L+E+ ++ +VA+ ++F+ + L Sbjct: 332 ---NERGRAGFVMANSA---SDARSSEQEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTL 385 Query: 408 WILSNRKT-------------------------------------EERRGKVQLINATDL 430 W K R V I+A + Sbjct: 386 WFFDKAKARLSPPSSPALLPKVEGGEEDLPLSRRILTERDGEGNVPNRADTVLFIDARHI 445 Query: 431 WTSIRNEGKKRRIINDDQRRQILDI 455 + R + R Q + ++ Sbjct: 446 Y---RQVDRAHRDWTPAQIGFMANL 467 >gi|167752725|ref|ZP_02424852.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216] gi|167659794|gb|EDS03924.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216] Length = 529 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 105/558 (18%), Positives = 204/558 (36%), Gaps = 59/558 (10%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKY 59 +L ++ L G TD ++L L+ + + + + + Sbjct: 6 NKAVKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKEKIRHEIVEV 65 Query: 60 LAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLG---STNTRNNLESYIASFSDNAK 112 ++ + Y F+ T E L T ++ I + DN Sbjct: 66 QGIHDTDFIELQLSRPNQYMQDGVFFLTDETFWDKLILTSPTGMAIAFDTAIKTLDDNEP 125 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + G+L + + I+ ++ +YE+ ++ F + Sbjct: 126 KLKNALPQQIFTKTALEPGVLKSVVDEINKIDPQ-KFNDHDLIGRVYEYFLQAFSINTDK 184 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V L +L+ T+YDP CG+GG A + G Sbjct: 185 EEGEFYTPHSIVELIASLI-----------EPFDGTVYDPCCGSGGMFVQAAKFIEAHGG 233 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + K + +GQE EP T+ + + IR + + ST S D +F Sbjct: 234 NTKA---VNVYGQESEPATYRLAKMNLAIRGISYHLGD------RAVSTFSDDQHKELKF 284 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351 Y ++NPPF K + E R+ G G+P S+ + +++H+ NKL + Sbjct: 285 DYIMANPPFNLKKYAEYGGFE------TDSRWQGYGVPPTSNANYAWILHILNKLNVSR- 337 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A +L++ L + EIR+ L+E+D +EAI+ LP ++F+ T+I+ LWIL+ Sbjct: 338 --GIAGFLLANGALDDSDT----LEIRKLLIESDKVEAIIVLPRNMFYSTDISVTLWILN 391 Query: 412 NRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 N K R G++ I+ ++I KK + + ++ IY + + Sbjct: 392 NNKKGGPWHGRQLRNRTGEILFIDLRTWNSNI--YEKKYVRLTEADIDRVRQIYFNWQ-T 448 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + Y + + ++ + ++ D S L + D + Sbjct: 449 ENFVEYAEPELYYAAHRDEIQGKGYSLVPSRYIEFIDRDTEIDYQSALSEM--SDKFNAL 506 Query: 523 MQQIYPYGWAESFVKESI 540 ++ + + Sbjct: 507 KKRWDANETELVNAFKIL 524 >gi|16799597|ref|NP_469865.1| hypothetical protein lin0522 [Listeria innocua Clip11262] gi|16412962|emb|CAC95754.1| lin0522 [Listeria innocua Clip11262] Length = 529 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 94/571 (16%), Positives = 195/571 (34%), Gaps = 74/571 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------------- 46 M T + W G T + I + L Sbjct: 1 MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56 Query: 47 ---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 G I F + +T +++ + T T N + Sbjct: 57 WENVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115 Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + + + IF+ F S +A ++ + + S E + +S+IYE Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ +F + ++ + TP+++ ++ +L + + K +++DPT G+G L Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +++ + ++ +GQE + + + +++ +E + NI Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278 Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331 TL D G + F ++NPP+ W + R+ G+ Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + FL+H L GR AI+L LF G E IR+ L++ IEAI+ Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAII 383 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P LF T+I + IL + E + ++A+ + I+ K+ + + + Sbjct: 384 GFPDKLFLNTSIPVCVVILRKNRIES---DILFVDASKGFEKIK----KQNNLRSEDVEK 436 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D ++R+ + +S + + P + ++ + + L+ Sbjct: 437 IVDTVINRKEIEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVTLNAD 496 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + D L + + E Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527 >gi|325912651|ref|ZP_08175034.1| type I restriction-modification system, M subunit [Lactobacillus iners UPII 60-B] gi|325478072|gb|EGC81201.1| type I restriction-modification system, M subunit [Lactobacillus iners UPII 60-B] Length = 895 Score = 241 bits (616), Expect = 3e-61, Method: Composition-based stats. Identities = 92/484 (19%), Positives = 181/484 (37%), Gaps = 63/484 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W+ L G + + + +L + + + R Sbjct: 1 MAVKKSELYSILWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGKR-----FADFEV 55 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121 + VK G + ++ I F +N K + D F+ Sbjct: 56 SEGASFDELVKACGKP---------------DVGERVDIIIQKFLENNQLKGLLPDVSFN 100 Query: 122 STIARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174 + L K L + K F + + D ++ + YE+ + +F E + Sbjct: 101 NP-DELGKGKELVDKVSGLIKMFQNPAIDFKSNMASGDDIIGDAYEYFMMKFAQESGKSK 159 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP +V L+ + L+DP G+G L A + + + Sbjct: 160 GQFYTPSEVSRTIARLIGIG---NIDVNVQRHYMLHDPAAGSGSLLIRAAD---EAPNRA 213 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290 I+ +GQE +T + ++ + I+ +TLS + + Sbjct: 214 DGNSIVDIYGQEKYTDTAGLAKMNFILHN-------KATGEIKAANTLSDPQYIDEFGEL 266 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F + + NPPF K D V ++ G +P +G + +H+ L+ Sbjct: 267 TKFDFIVMNPPFSDKDWTDGIKVSEDKFKRFDG--YGAIPPEKNGDYAWFLHVLKALKPT 324 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+A I+L LF G A E IR+ +++ I+ IV+LP +LF+ T I + + Sbjct: 325 ----GKAGIILPHGILFRGNA---EETIRKAIIKKKWIKGIVSLPANLFYGTGIPACIIL 377 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468 + ++R G + I+A+D + + +G K R + + +I+ + +R K +SR + Sbjct: 378 VDKENADKREG-IFFIDASDGY---KKDGNKNR-LREQDIEKIVQTFNNRTEIKGYSRFV 432 Query: 469 DYRT 472 + Sbjct: 433 SFEE 436 >gi|240948006|ref|ZP_04752424.1| type I restriction-modification system methyltransferase subunit like protein [Actinobacillus minor NM305] gi|240297676|gb|EER48150.1| type I restriction-modification system methyltransferase subunit like protein [Actinobacillus minor NM305] Length = 533 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 90/469 (19%), Positives = 191/469 (40%), Gaps = 64/469 (13%) Query: 20 EDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78 L G + ++ L+ + R+ ++ +Y + E+F + + Sbjct: 24 NALRGKVGGNEKNRDTVMGLVFLKFVGDKFTARRAEIQAQYPEI---FWENEAFYR-SEN 79 Query: 79 SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFDFSSTIARLEKA 130 FY + S + + +++ I + + + + ++F + I + E Sbjct: 80 VFYLSEHARWSYIVENASSDDIAIKIDTAMADIEERNPPLKGALPQNFYATLGIGKKE-- 137 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRDVVHLAT 188 + + + ++ ++ + E+ ++ F + + +F TP +V L Sbjct: 138 --IKSLIDEINKLDN-NRFHEKDLIGRVQEYFLQVFAIDSGVGKEKGEFYTPSSIVELIA 194 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 L+ T+YDP CGTGG ++ V + + K + GQE Sbjct: 195 ELI-----------EPYNGTVYDPCCGTGGMFVQSLKFVENHQGNRK---NISIVGQESN 240 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 P+T + + +R + + ST + D + + +Y ++NPPF Sbjct: 241 PDTWRLAKMNLALRGIAHNLGESAV------STFTHDQWKDLKVNYIMANPPFNL----- 289 Query: 309 KDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 +++ + RF G +P S+ + +++H+ +KL+ G A +L++ L Sbjct: 290 -KDWRDQNELTDDPRFAGYAVPPKSNANYAWILHMLSKLDETD---GIAGFLLANGALNT 345 Query: 368 GRAG---SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------- 416 G E IR+ L+END +EAI+ LP ++F+ T+I+ LWI++N K + Sbjct: 346 GGDKPDTDTEYAIRKQLIENDKVEAIIVLPREMFYSTDISVTLWIVNNNKKQRSLNGRQL 405 Query: 417 -ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 R+ ++ ++ L + I KK + + Q+ +IY + + GK Sbjct: 406 RNRQNEILFMDLRTLNSHI--YEKKYVQLTAQEISQVCEIYFNWQTGKN 452 >gi|291320525|ref|YP_003515789.1| type I restriction modification system modification (methylase) protein [Mycoplasma agalactiae] gi|290752860|emb|CBH40835.1| Modification (Methylase) protein of type Irestriction modification system [Mycoplasma agalactiae] Length = 892 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 95/510 (18%), Positives = 182/510 (35%), Gaps = 86/510 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTL---------------------LR 42 + L + IW A L + ++ +L L L+ Sbjct: 3 NKITKEKLGSKIWAAANKLRDKLEAYEYKDYVLGLILYKFLCEKQTDYLIKNWVSKDQLK 62 Query: 43 RLECALEPTRSAVREKY-----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--- 94 L+ Y A D + F + S+ ++ L + Sbjct: 63 YLDSKYLDNMPNFSAFYTGDNLEADYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSF 122 Query: 95 ---NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIE 144 N + ++ S +D K++F+D F +++L E+ ++ + + I Sbjct: 123 NIQNFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGAETNEQTKVISDLLDIINDIP 182 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 V+ IYE+LI RF S + A +F TP +V L + ++ Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKDR------ 234 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDPT G+G L S + + QEL+ E + ++++ + Sbjct: 235 EFIKVYDPTSGSGSLLLTIGQEFKKYNSG---NSPVSYYAQELKAEVFNLTRMNLIMKNI 291 Query: 265 ESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + G TL +D + +SNPP+ + W +K ++ Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKHTLDP 346 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + G+ + FL+H ++ G AIVL LF G E Sbjct: 347 RYIE-------YGIAPKTKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN---SE 392 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +IR+ L++ I+ I+ LP ++F+ T I T + IL ++E+ + ++A+ L+ Sbjct: 393 GQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVKE 449 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K + ++I D+ +R + Sbjct: 450 ----GKNNKFSKSHIKKIADVVNNRIEIEN 475 >gi|15964352|ref|NP_384705.1| putative modification enzyme transmembrane protein [Sinorhizobium meliloti 1021] gi|15073529|emb|CAC45171.1| Putative modification enzyme transmembrane protein [Sinorhizobium meliloti 1021] Length = 526 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 91/497 (18%), Positives = 166/497 (33%), Gaps = 77/497 (15%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 ++++ +W A+ L ++ + +L LR + V K Sbjct: 1 MAADLKTISDKLWTTADKLRANSGILPAEYARPVLGLLFLRHADERFSE----VEAKLSP 56 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAI 114 GS I S A + + E S L S NL I + + + Sbjct: 57 REGSRIRPGSEAYKAEGAIFLPPEARFSYLLSLPEGENLGKKLTAAMRDIEAKNPELADV 116 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +L +L ++ + EL P + ++YE+ + F E + Sbjct: 117 LPK------TYQLIPDDVLVELLR-----ELQPLKISGDAFGHVYEYFMGNFAKETMQKG 165 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L ++ + DP CG+GG + + V Sbjct: 166 GEFYTPSSIVRLIVEII-----------EPYHGRILDPACGSGGMFVHSADFVKRHQREP 214 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291 +G E ET + + + L S I T +F Sbjct: 215 DKEL--SIYGVERTRETWRLAQMNLAVHGL--------SGKILDADTYRDPVFEEVTPKK 264 Query: 292 -----------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 F + ++NPPF ++K RF G+P + + L++ Sbjct: 265 DKDGRYEGSGGFDFVMANPPFNV------KELDKSKLLDVANRFPFGVPSADNANYLWIQ 318 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 ++L N GRA V+++S A E EIRR L+E+ ++ IV++ + F Sbjct: 319 FFWSRL----NETGRAGFVMANSA---ADARGTEQEIRRKLIESGSVDVIVSVGPNFFLT 371 Query: 401 TNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + LW K R +V ++A ++ I + + I+ ++ Sbjct: 372 VTLPCTLWFFDKGKATGPRADEVLFLDARHIFRQIDRAHRDFTEEQVEALANIVRLWRG- 430 Query: 460 ENGKF---SRMLDYRTF 473 E +F S+ F Sbjct: 431 EQPEFFTPSKAWLEEHF 447 >gi|291320531|ref|YP_003515795.1| type I restriction modification system Hsdm modification (methylase) protein [Mycoplasma agalactiae] gi|290752866|emb|CBH40841.1| Modification (Methylase) protein of type Irestriction modification system HsdM [Mycoplasma agalactiae] Length = 892 Score = 241 bits (615), Expect = 4e-61, Method: Composition-based stats. Identities = 105/629 (16%), Positives = 211/629 (33%), Gaps = 104/629 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + IW A+ L + ++ +L + L E + + ++ Sbjct: 3 NKITKEKLGSKIWDAADKLRAKLEPHEYKDYVLGLVFYKFLC---EKQTDYLIKNWITKD 59 Query: 64 GSNIDLESFVK--VAGYSFYNTSEYS-----LSTLGSTNTRNN--LESYIASFSD----- 109 ++ +FY + N Y FS Sbjct: 60 QLKYLDSKYLDNIPNFSAFYTGNNLEGDYEIFKDAKKECIDENGYFIDYSNLFSSWLENK 119 Query: 110 ---NAKA---IFEDFD-----------------FSSTIARL-----EKAGLLYKICKNFS 141 N + F +F+ F +++L ++ ++ + + Sbjct: 120 NEFNIQKFQLAFNNFNNSVNDAYKSLFKDLLVKFERDLSKLGSDTNKQTEVISSLLDIIN 179 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 I V+ IYE+LI RF S + A +F TP +V L + ++ Sbjct: 180 DIPSTNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKDR--- 234 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + +YDPT G+G L + + + + QEL+ E + +++ Sbjct: 235 ---EVIKVYDPTSGSGSLLITIGHEFKKYNNGDSP---VSYYAQELKTEVFNLTRMNLIM 288 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDA 311 + + + G TL +D + +SNPP+ +KW + + Sbjct: 289 KNISPTEIHA-----RNGDTLEQDWPMFENNDFSSYKHLSVDAVVSNPPYSQKWNSKEHS 343 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 ++ + G+ S FL+H ++ G AIVL LF G Sbjct: 344 LDPRYVE-------YGIAPESKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN-- 390 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431 E +IR+ L++ I+ I+ LP ++F+ T I T + IL R++E+ + ++A+ L+ Sbjct: 391 -SEGQIRKNLIQKQQIDTIIGLPINMFYSTEIPTIIMILKKRRSEK---DILFVDASKLY 446 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 G K+ + ++I D+ +R + RR+ + ++ + L+ Sbjct: 447 VK----GDKKNKFSKSHVKKIADVVNNRIEIEN---------FSRRVSLDEIVQNDYNLN 493 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 + ++ K + + + + K N ++K Sbjct: 494 ISRY--IDNFKKQEKYDLYSLMHGGISRDELAKLDKFFDLFTGLKDKLFKLNSNNYYELK 551 Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGE 580 I + IN D GE Sbjct: 552 IPNEDINSTING-EWSVTEYKKSFDKKGE 579 >gi|302346748|ref|YP_003815046.1| putative type I restriction-modification system, M subunit [Prevotella melaninogenica ATCC 25845] gi|302150375|gb|ADK96636.1| putative type I restriction-modification system, M subunit [Prevotella melaninogenica ATCC 25845] Length = 558 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 86/486 (17%), Positives = 182/486 (37%), Gaps = 65/486 (13%) Query: 4 FTGS-AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 T + L +W++A+ L + + IL LR + + + A+ Y Sbjct: 1 MTSTELKDLEGRLWQSADMLRAGAHLAANKYSQPILGLIFLRYADVLFKQHKEAIDTAYN 60 Query: 61 AFGGSNIDLES-FVKVAGYSFYNTS--EYSLSTLGSTNTRNNL-----ESYIASFSDNAK 112 + G+ ++ + + F+ + + + L I + Sbjct: 61 EYKGTRMERSYKDIAIEKCGFFLPECAYFDYLNDAPDDAQKALLVKAAMEAIEHENPRMD 120 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + + E+ LL +I + F I P+ + + IYE+ + F + Sbjct: 121 GVLPK-EVYGQLVPEEEPELLSRIVRVFKDI---PENISIDIFGQIYEYFLGNFALAEGQ 176 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 G F TP VV +L + DP CG+GG A ++ + Sbjct: 177 GGGAFYTPASVVQYMVEVLQPATGD---------KKFLDPACGSGGMFVQAARYMHRHNT 227 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291 ++ +G E EP+T + +L+ + + I + ++ D + + Sbjct: 228 SNEQMMNFRCYGVEKEPDTVKLAKMNLLLNNVRGE--------IMEANSFYSDPYNAVGQ 279 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK---------------ISDGS 335 F Y ++NPPF + + RF G+P+ + + + Sbjct: 280 FDYVMANPPFNVDEVVVERVTD-------DARFNTYGVPRNKTKSAKKASDKKETVPNAN 332 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L++ + A L G+AA+V+++S AG E EIR+ ++E+ +I +V LP+ Sbjct: 333 YLWIGYFATALNEQ----GKAALVMANSA---SDAGGSELEIRKKMIEDGIISQMVTLPS 385 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 ++F + LW + ++ + + ++ I+A +++T + +K I + Sbjct: 386 NMFSTVTLPATLWFFNKKRPK--KDEILFIDARNIFTQVDRAHRKFSDEQVKNLGIISRL 443 Query: 456 YVSREN 461 Y + Sbjct: 444 YEGDSD 449 >gi|148825871|ref|YP_001290624.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE] gi|148716031|gb|ABQ98241.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE] Length = 443 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 75/450 (16%), Positives = 153/450 (34%), Gaps = 56/450 (12%) Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP---- 151 + I ++ K + + L + FS T Sbjct: 35 IDDAF-DAIEKDNEKLKGVLQRIS-----GYAVNEDTLRGLIILFSDTHFTRPTYNGEPV 88 Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ ++YE+ + RF + + TP+ +V L +L Sbjct: 89 HLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPYSG 137 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGF + + + +GQE P T + M IR ++ D Sbjct: 138 RVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGIDYD 194 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + + + ++ K+ + ++NPPF + R+ G Sbjct: 195 FGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWAYG 241 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 P + + +L H+ L G+ A++L++ + + E EIR+ ++ +L+ Sbjct: 242 TPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKGIINANLV 295 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 E +VALP LF T I +W L+ K +R+G+V I+A + R D Sbjct: 296 ECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFTAD 350 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506 +I + + + S + + + + F+L E + Sbjct: 351 DIAKIANTLHAWQK---SDGYEDQAAFCKSTTLEEIKDNDFVLTPGRYVGTAEQEDDGVP 407 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 408 FAEKMQNLTALLKEQFAKSAELEAEIKKNL 437 >gi|313898150|ref|ZP_07831689.1| putative type I restriction-modification system, M subunit [Clostridium sp. HGF2] gi|312957178|gb|EFR38807.1| putative type I restriction-modification system, M subunit [Clostridium sp. HGF2] Length = 538 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 97/500 (19%), Positives = 192/500 (38%), Gaps = 62/500 (12%) Query: 1 MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M T + L +W L G ++ L+ E R + Sbjct: 1 MARATKTKKEVEVSLETVLWNCRVALRGVGTTEKNRDAVIGLVFLKFAGDKFEKRRKELL 60 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--- 113 ++Y + V FY S + + N++ I + + Sbjct: 61 DQYGDISAFLEKPSFYNAV--NVFYLKETARWSYIVKNASANDIAIIIDQAMADIEESNP 118 Query: 114 -IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + + + N + I+ + ++ +YE+ ++ + + ++ Sbjct: 119 PLKGALTLNLFATLGADKAKIKDLIDNVNQID-EKRFQEEDLIGRVYEYFLQIYAASGTK 177 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP VV L ++ T+YDP CG+GG +M V Sbjct: 178 EDGEFYTPACVVKLIAEMI-----------EPYSGTVYDPCCGSGGMFVQSMKFVDRHNG 226 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + GQE + ET +C + IR + + + ST ++DL K+ Sbjct: 227 N---RQKISIIGQESQAETWRLCKMNLAIRGIAHNLGE------KNASTFTEDLHKDKKV 277 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG----LPKISDGSMLFLMHLANKLEL 348 + ++NPPF K KE + RF +P +S+ + +++H+ NKL++ Sbjct: 278 DFIMANPPFNLKN------WRKEDELVGDPRFMKAGFSVMPPVSNANYAWILHMLNKLDV 331 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G A +L++ L A E +R+ L+E D +EAI+ LP D+F+ +++ LW Sbjct: 332 NH---GIAGFLLANGAL---EADGVEYTLRKELIEKDKVEAIIVLPRDMFYTVDLSCTLW 385 Query: 409 ILSNRKTE---------ERRGKVQLINA------TDLWTSIRNEGKKRRIINDDQRRQIL 453 I++ K +R ++ ++ ++ +N+ KK+ ++ D+Q QI Sbjct: 386 IMNMNKKAVVVNGRRLRDRTSEILFMDLRTWNGNSEEIVIDKNKKKKKTVLTDEQISQIK 445 Query: 454 DIYVSRENGKFSRMLDYRTF 473 +Y S ++ + D F Sbjct: 446 AVYNSWQSDESDEYKDVPEF 465 >gi|257088129|ref|ZP_05582490.1| type I restriction enzyme M protein [Enterococcus faecalis D6] gi|256996159|gb|EEU83461.1| type I restriction enzyme M protein [Enterococcus faecalis D6] gi|315026886|gb|EFT38818.1| type I restriction-modification system, M subunit [Enterococcus faecalis TX2137] Length = 530 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 87/538 (16%), Positives = 182/538 (33%), Gaps = 68/538 (12%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73 W G T + I + L V E + N ++ Sbjct: 12 WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQN-PSKALE 70 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119 + Y + + F+ + + IF+ Sbjct: 71 YMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130 Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F S +A ++ + + S E D +S+IYE+L+ +F + ++ Sbjct: 131 FDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATVLASDMGQ 189 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP+++ ++ +L + ++YDPT G+G L +++ + I Sbjct: 190 YYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASYMKNSHKRGMI 243 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------- 289 GQE + + + +++ +E + I TL D G Sbjct: 244 K----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDGVVDGKDN 294 Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLE 347 + F ++NPP+ W + R+ G+ + FL+H L Sbjct: 295 PRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYAFLLHCLYHL- 345 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR AI+L LF G A E IR+ L++ IE ++ P LF T+I + Sbjct: 346 ---EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCV 399 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 IL +T + ++A+ + ++ K+ + + +I+D V R+ + +S Sbjct: 400 LILRKNRTAS---DILFVDASREFEKLK----KQNHLRLEDVDKIVDTVVQRKEIEKYSH 452 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + P + ++ + + + + + + ++L + Sbjct: 453 LATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEAELLSMLDD 510 >gi|284800797|ref|YP_003412662.1| type I restriction enzyme M protein [Listeria monocytogenes 08-5578] gi|284993983|ref|YP_003415751.1| type I restriction enzyme M protein [Listeria monocytogenes 08-5923] gi|284056359|gb|ADB67300.1| type I restriction enzyme M protein [Listeria monocytogenes 08-5578] gi|284059450|gb|ADB70389.1| type I restriction enzyme M protein [Listeria monocytogenes 08-5923] Length = 529 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 93/571 (16%), Positives = 194/571 (33%), Gaps = 74/571 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45 M T + W G T + I + L Sbjct: 1 MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56 Query: 46 --CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 G I F + + +++ + T T N + Sbjct: 57 WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DRDRFNIGMMTDTFTHFNQQIA 115 Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + + + IF+ F S +A ++ + + S E + +S+IYE Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ +F + ++ + TP+++ ++ +L + + K +++DPT G+G L Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +++ + ++ +GQE + + + +++ +E + NI Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278 Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331 TL D G + F ++NPP+ W + R+ G+ Sbjct: 279 TLESDWPDGVVEGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + FL+H L GR AI+L LF G E IR+ L++ IEAI+ Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAII 383 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P LF T+I + IL + E + ++A+ + I+ K+ + + + Sbjct: 384 GFPDKLFLNTSIPVCVVILRKNRIES---DILFVDASKGFEKIK----KQNNLRSEDVEK 436 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D ++R+ + +S + + P + ++ + + L+ Sbjct: 437 IVDTVINRKEIEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVTLNAD 496 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + D L + + E Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527 >gi|313610497|gb|EFR85650.1| type I restriction-modification system, M subunit [Listeria monocytogenes FSL F2-208] Length = 529 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 94/571 (16%), Positives = 191/571 (33%), Gaps = 74/571 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45 M T + W G T + I + L Sbjct: 1 MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATYWLNGVLRGKT 56 Query: 46 --CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 G I F + +T +++ + T T N + Sbjct: 57 WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115 Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + + + IF+ F S +A ++ + + S E + +S+IYE Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ +F + ++ + TP+++ ++ +L + + K +++DPT G+G L Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +++ + ++ +GQE + + + +++ +E + NI Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278 Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331 TL D G + F ++NPP+ W + R+ G+ Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + FL+H L GR AI+L LF G E IR+ L++ IE I+ Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIETII 383 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P LF I + IL + E V I+A+ + + K+ + + + Sbjct: 384 GFPEKLFLNAAIPVCVVILRKNRIES---DVLFIDASKEFEKTK----KQNSLRSEDVDK 436 Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D ++R+ K+S + + P + ++ + + L+ Sbjct: 437 IVDTVINRKEIDKYSHIATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVSLNAD 496 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + D L + + E Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527 >gi|283770885|ref|ZP_06343777.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus H19] gi|283461032|gb|EFC08122.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus H19] Length = 405 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 103/445 (23%), Positives = 180/445 (40%), Gaps = 48/445 (10%) Query: 93 STNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148 +T R S + S+N +F D D SST E+ L+ K+ N + Sbjct: 2 ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHS 61 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + YE LI RF + + A +F TP+ V + ++ D D +R Sbjct: 62 DMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRH 113 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDPTCG+G L K + GQE T+ + ML+ + Sbjct: 114 VYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV---- 159 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 R + +I+ TL F G F ++NPP+ KW D E +G L Sbjct: 160 -RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKL 213 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387 S F+ H+ + L+ G A+VL LF G A E IRR+L+E + + Sbjct: 214 APKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYL 266 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ LP ++F+ T+I T + + +K ++ V I+A++ + GK + ++D Sbjct: 267 EAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDA 320 Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 Q +I++ Y +E K+S + + P R ++ L+ K Sbjct: 321 QVERIINTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLK 379 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGW 531 + + ++++ Sbjct: 380 NIDKEIAEIEQEINAYLKELGVLKD 404 >gi|284023442|ref|ZP_06377840.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus 132] Length = 424 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 105/455 (23%), Positives = 184/455 (40%), Gaps = 49/455 (10%) Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICK 138 T ++ + L +T R S + S+N +F D D ST E+ L+ K+ Sbjct: 12 TQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLISTRLGNNVKERTALISKVMV 70 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 N + + ++ + YE LI RF + + A +F TP+ V + ++ D D Sbjct: 71 NLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD-- 128 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 +R +YDPTCG+G L K + GQE T+ + Sbjct: 129 ------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMN 172 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ML+ + R + +I+ TL F G F ++NPP+ KW D E + Sbjct: 173 MLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFS 227 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 G L S F+ H+ + L+ G A+VL LF G A E IR Sbjct: 228 GY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIR 275 Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+A++ + Sbjct: 276 RYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK---- 329 Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 GK + ++D Q +I+D Y +E K+S + + P R ++ Sbjct: 330 GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPI 388 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 L+ K + + ++++ Sbjct: 389 DLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 423 >gi|313620399|gb|EFR91801.1| type I restriction-modification system, M subunit [Listeria innocua FSL S4-378] Length = 529 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 95/571 (16%), Positives = 192/571 (33%), Gaps = 74/571 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------------- 46 M T + W G T + I + L Sbjct: 1 MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56 Query: 47 ---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 G I F + +T +++ + T T N + Sbjct: 57 WENVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115 Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + + + IF+ F S +A ++ + + S E + +S+IYE Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ +F + ++ + TP+++ ++ +L + + K +++DPT G+G L Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +++ + ++ +GQE + + + +++ +E + NI Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278 Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331 TL D G + F ++NPP+ W + R+ G+ Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + FL+H L GR AI+L LF G E IR+ L++ IEAI+ Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKSLIDKHQIEAII 383 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P LF I + IL + E V I+A+ + + K+ + + + Sbjct: 384 GFPEKLFLNAAIPVCVVILRKNRIES---DVLFIDASKEFEKTK----KQNSLRSEDVDK 436 Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I+D ++R+ K+S + + P + ++ + + L+ Sbjct: 437 IVDTVINRKEIDKYSHLATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVALNAD 496 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + D L + + E Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527 >gi|3581984|emb|CAA09337.1| unnamed protein product [Klebsiella pneumoniae] Length = 396 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 99/425 (23%), Positives = 161/425 (37%), Gaps = 59/425 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61 A L IW A ++ G DF + +L R + E +V+ +A Sbjct: 5 QQRAELHRQIWAIANEVRGAVDGWDFKQYVLGALFYRFISENFTSYIEAGDDSVQYAGMA 64 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108 +++ F S+ + NT ++L + + S Sbjct: 65 DSDIGDEIKDDAVRTKGYFIAPSQLFCNVANGANTNDHLNADLNSIFVAIESSASGYPSE 124 Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162 + K +F DF +T RL EK L + K G+ L D + + YE L Sbjct: 125 ADIKGLFA--DFDTTSNRLGSTVKEKNIRLAAVLKGVEGLALGDFDAHQIDLFGDAYEFL 182 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + + + +F TP+ V L L + ++ K +YDP G+G L Sbjct: 183 ISNYAANGGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 234 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A H + GQE+ T + M + + D +I+ G+TL Sbjct: 235 AKKHFDNHIIEDG------FFGQEINHTTFNLARMNMFLHNINYDKF-----DIRLGNTL 283 Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339 F ++ F +SNPP+ KW D RF P L S F+ Sbjct: 284 LAPEFKDEKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGVLAPKSKADFAFV 338 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H N L + GRA IV + G A E +IR++L++++ +E +++L +LFF Sbjct: 339 LHALNYL----SAKGRAPIVCFPGIFYRGGA---EQKIRKYLVDSNYVETVISLAPNLFF 391 Query: 400 RTNIA 404 T IA Sbjct: 392 GTTIA 396 >gi|14520514|ref|NP_125989.1| type i restriction modification enzyme, subunit m [Pyrococcus abyssi GE5] gi|5457729|emb|CAB49220.1| hsdM type I restriction modification enzyme, subunit M [Pyrococcus abyssi GE5] Length = 623 Score = 239 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 96/549 (17%), Positives = 194/549 (35%), Gaps = 58/549 (10%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 TE S L + + A+ + G + +L F + + + Sbjct: 113 TETKISRDRLISLLKAAADQIRGGLD---YKA-LLVFLFYKAISDRW-------MKMAQD 161 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--------TNTRNNLESYI-----ASFS 108 + +YN + L + + + I Sbjct: 162 LMKEGKTKTQAYILTNKRYYNLFDEDTGKLYTWHEVVKSRETIKEMANALIKISEMNEEL 221 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + K + E I + L +I K F+ ++ ++ + YE ++ F Sbjct: 222 ADLKKLVEVLGLIGFIKE-DNLHKLEEIVKIFNRVDF--AEFDSDILGDAYEWILSYFAP 278 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + ++ + TPR+V+ L LL D + DP G+GG L +A +V Sbjct: 279 QKAKE-GEVYTPREVIRLLVELLDIEDGSDI----------LDPASGSGGMLIEAYRYVK 327 Query: 229 DCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRL---ESDPRRDLSKNIQQGSTLS 283 + P ++ +GQEL T A+ +++ + + D N Q L Sbjct: 328 EKLKKEGFDEEPAIMLYGQELNEVTAALSKLNLILHGIQEFKIFEGADSLVNPQWEEELK 387 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 ++ + Y ++NPP+ + + ++ K+ G ++ + Sbjct: 388 RNGIEDGKVDYVIANPPWNQDGYDETRLSDRRIKHIY----KYGYTSKQSADWAWVQLML 443 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + IVL + LF G A E IR+ ++E+DLIEAI+ LP LF+ Sbjct: 444 YYARR------KVGIVLDTGALFRGGA---EKAIRQGIVEDDLIEAIILLPEKLFYNAAA 494 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + +L+ K EER+GK+ INA+ + +K + D+ R+I+D Y + + Sbjct: 495 PGIIMVLNPNKPEERKGKILFINASREFRKHPEV-RKLNQLADEHIRKIVDAYREFKEIE 553 Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 FSR++ + L + ++ + + ++++ + + Sbjct: 554 GFSRVVTLEEIRKNDYNLNVSLYVFPEDEREQIDLAKEFKEFKEIEKRERELVEKAKAYI 613 Query: 523 MQQIYPYGW 531 + Sbjct: 614 EGILGAMDN 622 >gi|93007189|ref|YP_581626.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5] gi|92394867|gb|ABE76142.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5] Length = 526 Score = 239 bits (611), Expect = 1e-60, Method: Composition-based stats. Identities = 80/489 (16%), Positives = 171/489 (34%), Gaps = 61/489 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL- 60 S L + +W A++L ++ +L LR ++ E + ++E Sbjct: 1 MDISIKQLESDLWNAADNLRANSTLTAAEYKDPLLGLVFLRFVQNRHEDAKVKIQESLAI 60 Query: 61 ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAK 112 + + FV ++Y N + + I + Sbjct: 61 NPRTGQKREVTKDDFVAAGSILLPEKAKYDYLAALPESENIAEAINNAMKLIEEEYPSLV 120 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS- 171 I ++ LL + + F+ + + IYE + +F + + Sbjct: 121 GILPKNY------QVFDNKLLRDLVRVFNKDAVRKAKGD--IFGRIYEFFLMKFSMQGAG 172 Query: 172 -EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP +V+L + ++DP CG+GG + + Sbjct: 173 AQEGGEFFTPPSLVNLIVNFIQPDHG-----------IIHDPACGSGGMFVQTAHFIQGH 221 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-G 289 + + + +G EL+ + + + +E I + ++ + Sbjct: 222 MPNKSVNEAITVYGTELKSNNTKLAKMNLAVHGIEGA--------IIESNSFYTNPHDLN 273 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-----KISDGSMLFLMHLAN 344 + + ++NPPF K+ E R G P I +G+ L++ + + Sbjct: 274 GKCDFVMANPPFNVSGIDGKNKFLTE-----DARLPFGAPLTKGGTIGNGNYLWIQYFHS 328 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L GRA V++SS AG E IR+ L+E +E IV++ + F+ ++ Sbjct: 329 YLNKT----GRAGFVMASSA---TDAGHAEKLIRQQLIETGDVECIVSIANNFFYTRSLP 381 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 ++W + K E + K+ +I+A + + R + ++DQ + + + + Sbjct: 382 CHVWFFNKEKKAENKDKILMIDARNTY---RKVSSTIQDFSEDQLEGLTALINAFRGDEL 438 Query: 465 SRMLDYRTF 473 D F Sbjct: 439 GVSKDNEWF 447 >gi|212695171|ref|ZP_03303299.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855] gi|319641373|ref|ZP_07996066.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A] gi|212662257|gb|EEB22831.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855] gi|317386988|gb|EFV67874.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A] Length = 529 Score = 239 bits (611), Expect = 1e-60, Method: Composition-based stats. Identities = 108/493 (21%), Positives = 191/493 (38%), Gaps = 65/493 (13%) Query: 1 MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-- 55 M + +L ++ L G TD ++L L+ + + + + Sbjct: 1 MAKKQTKITKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKDKIRH 60 Query: 56 -REKYLAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLG---STNTRNNLESYIASF 107 + + Y F+ T E L T ++ I + Sbjct: 61 EIVEVQGIHDEAFVEMQLSRPNQYMQDGVFFLTDETFWDKLILTAPTGMAIAFDTAIKTL 120 Query: 108 SDN---AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 DN K F+ T L G+L + + I+ ++ +YE+ ++ Sbjct: 121 DDNEPKLKNALPQQIFTKTALEL---GVLKSVVDEINKIDPK-KFTDHDLIGRVYEYFLQ 176 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + +F TP +V L +L+ T+YDP CG+GG A Sbjct: 177 AFSINADKEEGEFYTPHSIVELIASLI-----------EPFDGTVYDPCCGSGGMFVQAT 225 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + G + K + +GQE EP T+ + + IR + ST S Sbjct: 226 KFIEAHGGNTKA---VNVYGQESEPATYRLAKMNLAIRGISYHLGDKAV------STFSD 276 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLA 343 D +F Y ++NPPF K + E R+ G G+P S+ + +++H+ Sbjct: 277 DQHKDLKFDYIMANPPFNLKKYAEYGEFE------TAPRWKGYGVPPASNANYAWILHIL 330 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 NKL++ G A +L++ L + EIR+ L+END IEAI+ LP ++F+ T+I Sbjct: 331 NKLDVNH---GIAGFLLANGALDDSDT----LEIRKRLIENDKIEAIIVLPRNMFYSTDI 383 Query: 404 ATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + LWIL+N K R G++ I+ ++I KK + + + ++ Sbjct: 384 SVTLWILNNNKKGGPWHGRQLRNRTGEILFIDLRTWNSNI--YEKKYVRLTETEISRVCQ 441 Query: 455 IYVSRENGKFSRM 467 IY + + F+ Sbjct: 442 IYFNWQTENFAEY 454 >gi|121608535|ref|YP_996342.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] gi|121553175|gb|ABM57324.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] Length = 519 Score = 239 bits (611), Expect = 1e-60, Method: Composition-based stats. Identities = 103/494 (20%), Positives = 181/494 (36%), Gaps = 73/494 (14%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 +W A + G+ F +LP L+RL + + A+G LE Sbjct: 2 EQMLWDAACSIRGEKDAAKFKDYLLPLLFLKRLSDVFD---DEIARLAEAYGDRATALEI 58 Query: 72 FVKVAGY-SFYNTSEYSLSTL-----------------GSTNTRNNLESYIAS---FSDN 110 G FY E + L + ++L + + S Sbjct: 59 TEFDHGLLRFYLPPEARWAVLSGRETYEWPLDAQGRSTAPRDIGDHLTRAVRAVVKHSPT 118 Query: 111 AKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRF 166 ++ + DF R L + + FS V + YE+L+R+F Sbjct: 119 LASVIDMVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKF 178 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + A +F TP +V L +L P T +D CG+ G L Sbjct: 179 AEGSGQSAGEFFTPTEVGFLMAHIL----------RPRPGETCHDYACGSAGLLIKLQLV 228 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + ++P GQEL+ E++AV +I +E +G T+ Sbjct: 229 ARELDPTSRVPLQ--LSGQELQAESYAVAQMNAIIHDMEVTL--------ARGDTMINPK 278 Query: 287 F-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLM 340 F +R ++NP + + + D N RF G G +L Sbjct: 279 FREANGKLRRHDVVVANPMWNQPFAPDL------FANDPFDRFRTAGGVTSGKGDWAWLQ 332 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGR---AGSGESEIRRWLLENDLIEAIVALPTDL 397 H L GRAA+VL + + G E IR+W ++ D I+ ++ LP +L Sbjct: 333 HTLACLAAD----GRAAVVLDTGAVTRGSGSKNEDKERNIRKWFVDKDTIDGVILLPENL 388 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T A + +L+ RK+ R+GK+ L+NA+ + G+ + + ++ + + +Y+ Sbjct: 389 FYNTTAAGVIVVLNKRKSTARKGKITLLNASKHFRK----GRPKNYLPEEDIKPLAAMYL 444 Query: 458 SRE--NGKFSRMLD 469 E G+ + + Sbjct: 445 KGEAVEGEVAVITT 458 >gi|229021766|ref|ZP_04178344.1| Type I restriction-modification system, M subunit [Bacillus cereus AH1272] gi|228739513|gb|EEL89931.1| Type I restriction-modification system, M subunit [Bacillus cereus AH1272] Length = 402 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 91/423 (21%), Positives = 172/423 (40%), Gaps = 50/423 (11%) Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 ++ + +F+D D +S ++L ++ L+ K+ N + I D V V+ + YE++I Sbjct: 20 EDFENLFDDMDLNS--SKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYEYMI 77 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 +F + + A +F TP+ V + ++ I+ +YD TCG+G L Sbjct: 78 SQFAANAGKKAGEFYTPQQVSRILAKIVTAGKTE--------IKDVYDGTCGSGSLLLRV 129 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +GQE T+ + ML+ + +I+ TL Sbjct: 130 GKEAK----------VYNYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNADTLE 174 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + KRF ++NPP+ KW D + E + L S F+ H Sbjct: 175 EPQHLDKRFEAIVANPPYSAKWSADDKFQDDERFSNY-----AKLAPKSKADFAFVQHFI 229 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402 + L G A+VL LF G A E IR++L+E + ++A++ LP ++FF T+ Sbjct: 230 HHLAD----NGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFFGTS 282 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461 I T + +L +K + V I+A++ + GK + + D+ +I++ Y+SRE Sbjct: 283 IPTCILVL--KKCRKHDDNVIFIDASNEFEK----GKNQNHLADEHVEKIVNTYLSRETF 336 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 K+S + P + ++ + E + ++ Sbjct: 337 DKYSYAATLDEIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLEAIDEEIAKVDEELAAY 396 Query: 522 MMQ 524 + Sbjct: 397 FKE 399 >gi|260581409|ref|ZP_05849223.1| type I restriction-modification system, M subunit [Haemophilus influenzae RdAW] gi|12643776|sp|Q57168|T1MH_HAEIN RecName: Full=Putative type I restriction enzyme HindVIIP M protein; Short=M.HindVIIP gi|1574745|gb|AAC22936.1| type I modification enzyme (hsdM) [Haemophilus influenzae Rd KW20] gi|260091951|gb|EEW75900.1| type I restriction-modification system, M subunit [Haemophilus influenzae RdAW] Length = 443 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 77/453 (16%), Positives = 155/453 (34%), Gaps = 56/453 (12%) Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP- 151 + + I ++ K + + L + FS T Sbjct: 32 AKLIDDAF-DAIEKDNEKLKGVLQRIS-----GYAVNEDTLRGLIILFSDTHFTRPTYNG 85 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ ++YE+ + RF + + + TP+ +V L +L Sbjct: 86 EPVHLGAKDILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML-----------EP 134 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDP G+GGF + + + +GQE P T + M IR + Sbjct: 135 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 191 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + D + + + ++ K+ + ++NP F K + R+ Sbjct: 192 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPHFNDKEW-------WNESLADDPRW 238 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 239 AYGTPPKGNANFAWLQHMIYHLSP----NGKIALLLANGSM--SSQTNNEGEIRKAIINA 292 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 293 DLVECMVALPGQLFTNTKIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 347 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503 D +I D + + S + + + + F+L E + Sbjct: 348 TADDIAKIADTLHAWQT---SDGYEDQAAFCKSATLEEIKNNDFVLTPGRYVGTAEQEDD 404 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 405 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 437 >gi|283768149|ref|ZP_06341064.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus H19] gi|283462028|gb|EFC09112.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus H19] Length = 405 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 104/445 (23%), Positives = 179/445 (40%), Gaps = 48/445 (10%) Query: 93 STNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148 +T R S + S+N +F D D SST E+ L+ K+ N + Sbjct: 2 ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHS 61 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + YE LI RF + + A +F TP+ V + ++ D D +R Sbjct: 62 DMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRH 113 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDPTCG+G L K + GQE T+ + ML+ + Sbjct: 114 VYDPTCGSGSLLLRVG----------KETKVYRYFGQERNNTTYNLARMNMLLHDV---- 159 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 R + +I+ TL F G F ++NPP+ KW D E +G L Sbjct: 160 -RYENFDIRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKL 213 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387 S F+ H+ + L+ G A+VL LF G A E IRR+L+E + + Sbjct: 214 APKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYL 266 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ LP ++F+ T+I T + + +K ++ V I+A++ + GK + ++D Sbjct: 267 EAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDA 320 Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 Q +I+D Y +E K+S + + P R ++ L+ K Sbjct: 321 QVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLK 379 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGW 531 + + +++ Sbjct: 380 NIDKEIAEIEQEINEYRKELGVLKD 404 >gi|330723247|gb|AEC45617.1| Type I restriction-modification system methyltransferase subunit [Mycoplasma hyorhinis MCLD] Length = 906 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 98/513 (19%), Positives = 184/513 (35%), Gaps = 78/513 (15%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP----------- 50 T T + L N IW+ A ++ G + T++ +L + + E Sbjct: 11 TNKTFTKQELGNKIWEAANEMRGSLEITEYKNFLLELIFYKTISQRFEEWFLKYNGNIED 70 Query: 51 -------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNN 99 + + + ++ +Y S+ N + + Sbjct: 71 IQWLNDDYYEDNSSIKSPYSKNEYEEIKESANKNLGYFIQHQYLYSSWMKDNARNFSASL 130 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEK------------AGLLYKICKNFSGIELHP 147 L I SF N + E+ F + L L K+ + I + Sbjct: 131 LNRSINSFDSNLRGKSENL-FENIFKTLSDELYKLSTNEAEQTKKLKKLIEIIKDIPVKK 189 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ +YE+LI +F S + +F TP ++ L ++ Sbjct: 190 GQYD--ILGFVYEYLIGKFASSAGKKGGEFYTPHEISLLMAEIVAFHLKH------KDNI 241 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDPT G+G L + K + + QE+ T+ + +++ + Sbjct: 242 KIYDPTSGSGSLLLNIGEVFQKFN---KKKHSVTYYAQEINESTYKLTKMNLILHGVNVS 298 Query: 268 PRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + TL +D K R +SNPP+ KW+ + +K + Sbjct: 299 EIHA-----RNADTLKQDWPIDKINSTEPLRVDSVVSNPPYSLKWDTENAESDKRFR--- 350 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + + FL+H + G AIVL LF G E IR Sbjct: 351 ----SYAVAPKAKADFAFLLHDLYHISPD----GIVAIVLPHGVLFRGGN---EKIIRER 399 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 L+EN I++I+ LP+D+F+ T+I+T + IL RKT + + ++ ++A+ L+ K Sbjct: 400 LIENAEIDSIIGLPSDIFYGTSISTIIVIL-KRKTNDEKNQILFVDASKLFVKE----GK 454 Query: 441 RRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 + + ++I D ++ FSR++D Sbjct: 455 KNKLEISHIKKIADTVNNKIELKDFSRLVDVSE 487 >gi|15672633|ref|NP_266807.1| type I restriction enzyme M protein [Lactococcus lactis subsp. lactis Il1403] gi|12723556|gb|AAK04749.1|AE006298_2 type I restriction enzyme M protein [Lactococcus lactis subsp. lactis Il1403] gi|3057062|gb|AAC38346.1| HsdM [Lactococcus lactis] Length = 515 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 86/540 (15%), Positives = 177/540 (32%), Gaps = 66/540 (12%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----KYLAFGGSNID 68 N +W G T + I + L V + + Sbjct: 9 NKMWALLNQTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYDQDPVRA 68 Query: 69 LESFVKVAGYSFYNTSEY-SLSTLGSTN------TRNNLESYIASFSDNAKA----IFED 117 L+ + GY+ + + + + AK IF+ Sbjct: 69 LDYMKQKLGYAIQPKEFFKDWEAAIHEERFNIPMISDTFGHFNQQIAFEAKDDFEGIFDG 128 Query: 118 FDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F S+ +A ++ + + S E T +S+IYE+L+ +F + ++ Sbjct: 129 MRFDSSDLGSNAQARASVMISMIELLSAPEFDLSTGG-DTVSDIYEYLLEKFATVLASDM 187 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TP+++ + +L ++YDP G+ L +H+ H Sbjct: 188 GQYYTPKEISEVMARILTFGKADE------DNFSIYDPAVGSASLLITTASHMK----HS 237 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289 + GQE + + + +++ +E + I TL D G Sbjct: 238 NQRGAIKYFGQEKDATPYRLARMNLMMHNIEYNDI-----QIHHADTLESDWPDGVIEGK 292 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANK 345 + F ++NPP+ W + RF G+ + FL+H Sbjct: 293 DTPRMFDAVMANPPYSAHW--------NNKDREDDPRFREYGIAPKTKADYSFLLHCLYH 344 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 + GR AI+L LF G A E IR+ L++ IEA++ P LF T I Sbjct: 345 TKES----GRVAIILPHGVLFRGAA---EGRIRKALIDKHQIEAVIGFPDKLFLNTGIPV 397 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464 + IL + + ++A+ + ++N ++ + + +I + + R+ K+ Sbjct: 398 CVLILKKNRANS---DILFVDASQGFEKMKN----QKQLRPEDIDKITETVIHRKAVDKY 450 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 S + + P + ++ + + ++ + + Sbjct: 451 SHLATLEEVIENDYNLNIPRYVDTFEEEESIDLADIQGQIDEVDAEIAKANQTLANYFKE 510 >gi|315195780|gb|EFU26162.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus CGS01] Length = 378 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 44/406 (10%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP+ V + Sbjct: 14 ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 73 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 ++ D D +R +YDPTCG+G L K + GQE Sbjct: 74 AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 115 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + ML+ + R + +I+ TL F G F ++NPP+ KW Sbjct: 116 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 170 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D E +G L S F+ H+ + L+ G A+VL LF Sbjct: 171 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 221 Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+ Sbjct: 222 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 276 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485 A++ + GK + ++D Q +I+D Y +E K+S + + P R Sbjct: 277 ASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 331 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 ++ L+ K + + ++++ Sbjct: 332 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 377 >gi|315187187|gb|EFU20944.1| Site-specific DNA-methyltransferase (adenine-specific) [Spirochaeta thermophila DSM 6578] Length = 332 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 128/345 (37%), Gaps = 46/345 (13%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 MT + A+L N +W+ A+ L G ++ V+L L+ + E R + ++ Sbjct: 1 MTTNKPNGANLGFENKLWEMADKLRGHMDAAEYKHVVLGLIFLKYISDTFEAHRKQLLQE 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111 + E A F+ E + + + + I + + Sbjct: 61 --PYADPEDRDEYL---AANVFWVPPEARWEHIQAQAPQPTIGQVIDRAMEAIERENPSL 115 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEV 170 K + T+ ++ L ++ K I+L ++ + +YE+ + RF + Sbjct: 116 KGVLPKDYSRPTLDKV----RLGELVKLVGDIDLKARESGVKDPLGRVYEYFLGRFAAAE 171 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +G +F TP+ VV L ++ +YDP CG+GG + V Sbjct: 172 GKGGGEFYTPQCVVQLLVEMI-----------EPYRGRVYDPCCGSGGMFVQSEKFVEAH 220 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G + +GQE P T + + IRR+++D + T +DL Sbjct: 221 G---GKLGDIAIYGQESNPTTWRLAKMNLAIRRIDADLGPYAA------DTFFEDLHKDL 271 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + + L+NPPF + + E R+ G+P ++ + Sbjct: 272 KADFILANPPFNMSDWGGE-------RLTEDPRWKYGVPPANNAN 309 >gi|258450492|ref|ZP_05698580.1| type I restriction-modification system [Staphylococcus aureus A5948] gi|282929846|ref|ZP_06336981.1| type I restriction enzyme M protein [Staphylococcus aureus A9765] gi|257861797|gb|EEV84594.1| type I restriction-modification system [Staphylococcus aureus A5948] gi|282591805|gb|EFB96865.1| type I restriction enzyme M protein [Staphylococcus aureus A9765] Length = 382 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 44/406 (10%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP+ V + Sbjct: 18 ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 77 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 ++ D D +R +YDPTCG+G L K + GQE Sbjct: 78 AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 119 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + ML+ + R + +I+ TL F G F ++NPP+ KW Sbjct: 120 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 174 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D E +G L S F+ H+ + L+ G A+VL LF Sbjct: 175 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 225 Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+ Sbjct: 226 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 280 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485 A++ + GK + ++D Q +I+D Y +E K+S + + P R Sbjct: 281 ASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 335 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 ++ L+ K + + ++++ Sbjct: 336 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 381 >gi|148377828|ref|YP_001256704.1| modification (methylase) protein of type irestriction-modification system [Mycoplasma agalactiae PG2] gi|148291874|emb|CAL59265.1| Modification (Methylase) protein of type Irestriction modification system [Mycoplasma agalactiae PG2] Length = 892 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 108/609 (17%), Positives = 209/609 (34%), Gaps = 97/609 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTL---------------------LR 42 + L + IW A L + ++ +L L L+ Sbjct: 3 NKITKEKLGSKIWAAANKLRDKLEAYEYKDYVLGLILYKFLCEKQTDYLIKNWISKDQLK 62 Query: 43 RLECALEPTRSAVREKY-----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--- 94 + S Y D + +F + S+ ++ L + Sbjct: 63 YFDSKYLDNISNFSAFYTGDNLEGNYEIFKDAKKECIDENGNFIDYSDLFIAWLENKSSF 122 Query: 95 ---NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIE 144 N + ++ S +D K++F+D F +++L E+ ++ + + I Sbjct: 123 NIQNFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGADTNEQTKVISDLLDIINDIP 182 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 V+ IYE+LI RF S + A +F TP +V L + ++ Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKDR------ 234 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YDPT G+G L S + + QEL+ E + ++++ + Sbjct: 235 EFIKVYDPTSGSGSLLLTIGQEFKKYNSG---NSPVSYYAQELKAEVFNLTRMNLIMKNI 291 Query: 265 ESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + G TL +D + +SNPP+ + W +K ++ Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKHTLDP 346 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + G+ + FL+H ++ G AIVL LF G E Sbjct: 347 RYIE-------YGIAPKTKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN---SE 392 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +IR+ L++ I+ I+ LP ++F+ T I T + IL ++E+ + ++A+ L+ Sbjct: 393 GQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVKE 449 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 K + ++I D+ +R K RR+ + + + L+ + Sbjct: 450 ----GKNNKFSKSHIKKIADVVNNRIEIKN---------FSRRVLLDEIVANDYNLNISR 496 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 L L + + + +G + K N ++K +K Sbjct: 497 YIDNFKKQEQHDLYSLMHGGISK--EELAKLDNFFGLFTGLKDKLFKINANNYYELKVAK 554 Query: 555 SFIVAFINA 563 I IN Sbjct: 555 EDINPTING 563 >gi|320143287|gb|EFW35074.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 394 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 44/406 (10%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP+ V + Sbjct: 30 ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 89 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 ++ D D +R +YDPTCG+G L K + GQE Sbjct: 90 AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 131 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + ML+ + R + +I+ TL F G F ++NPP+ KW Sbjct: 132 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 186 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D E +G L S F+ H+ + L+ G A+VL LF Sbjct: 187 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 237 Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+ Sbjct: 238 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 292 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485 A++ + GK + ++D Q +I+D Y +E K+S + + P R Sbjct: 293 ASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 347 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 ++ L+ K + + ++++ Sbjct: 348 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 393 >gi|148377836|ref|YP_001256712.1| modification (methylase) protein of type irestriction-modification system HsdM [Mycoplasma agalactiae PG2] gi|148291882|emb|CAL59273.1| Modification (Methylase) protein of type Irestriction modification system HsdM [Mycoplasma agalactiae PG2] Length = 892 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 95/510 (18%), Positives = 178/510 (34%), Gaps = 86/510 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLA 61 + L + IW A L + ++ +L L + L ++ V ++ L Sbjct: 3 NKITKEKLGSKIWAAANHLRDKLEAYEYKDYVLGLILYKFLCEKQSNYLIKNWVTKEQLK 62 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYS--LSTLGSTNTRNN--LESYIASF--------SD 109 + S A Y+ N N Y F S Sbjct: 63 YLDSKYLDNISNFSAFYTGNNLESDYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSF 122 Query: 110 NAKA---IFEDFD-----------------FSSTIARL-----EKAGLLYKICKNFSGIE 144 N + F +F+ F +++L E+ ++ + + I Sbjct: 123 NIQDFQQAFNNFNNSINDAHKSLFKDLFVKFERDLSKLGSDTNEQTKVISSLLDIINDIP 182 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 V+ IYE+LI RF S + A +F TP +V L + ++ Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAHHLKDR------ 234 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + +YDPT G+G L S + + QEL+ E + ++++ + Sbjct: 235 KVIKVYDPTSGSGSLLLTIGQEFKKYNSG---NSPVSYYAQELKAEVFNLTRMNLIMKNI 291 Query: 265 ESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + G TL +D + +SNPP+ +KW +K ++ Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQKWNAEKHTLDP 346 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + G+ + FL+H ++ G IVL LF G E Sbjct: 347 RYIE-------YGIAPKTKADYAFLLHDLYHVQPD----GIITIVLPHGVLFRGN---SE 392 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +IR+ L++ I+ I+ LP ++F+ T I T + IL ++E+ + ++A+ L+ Sbjct: 393 GQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVKE 449 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K + ++I D+ +R + Sbjct: 450 ----GKNNKFSKSHIKKIADVVNNRIEIEN 475 >gi|160893874|ref|ZP_02074656.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50] gi|156864461|gb|EDO57892.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50] Length = 338 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 136/368 (36%), Gaps = 44/368 (11%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F + + +F TP VV +L +YDP CG+GG + Sbjct: 1 MFAEQEGKRGGEFFTPSCVVRTLVEVL-----------KPFKGRVYDPCCGSGGMFVQSA 49 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + +GQ+ P T + + IR +E D + T Sbjct: 50 KFIENHSGNI---SNISIYGQDSNPTTWKMAQMNLAIRGIEPDLGTYAA------DTFLD 100 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D R Y ++NPPF K E R+ G+P + + +L H+ Sbjct: 101 DRHPTLRADYIMANPPFNLSDWGLD-------KLKEDQRWKYGIPPAGNANFAWLQHMIY 153 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L GR +VL++ L GE EIR+ ++ DL+E IVA+PT LF+ T I Sbjct: 154 HLAPA----GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVECIVAMPTQLFYTTQIP 207 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 LW ++ +K ++ G+ I+A + + K R + DD ++I D Y + +G Sbjct: 208 VSLWFINKQK--KQPGRTLFIDARKMGKMVSR---KLRELTDDDIKKISDTYEAFVDG-- 260 Query: 465 SRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 GY + + +IL +E + L M Sbjct: 261 ---TLENVKGYCAVTDTAEIEKQDYILTPGRYVGIEEQEADDEPFEEKMDRLTSELAEMF 317 Query: 524 QQIYPYGW 531 + + Sbjct: 318 AKSHELED 325 >gi|258615581|ref|ZP_05713351.1| hypothetical protein EfaeD_07707 [Enterococcus faecium DO] Length = 411 Score = 237 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 181/416 (43%), Gaps = 45/416 (10%) Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 +F+D D S ++ + ++ K + +E+ V+ + YE LI +F SE Sbjct: 12 GLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEFLISQFASE 69 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP V + ++ + +++DPT G+G + + N++ Sbjct: 70 AGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT- 122 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 P + HGQEL T+ + +++ ++++ N++ G TL+KD T Sbjct: 123 ------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTD 171 Query: 290 KRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + + + + NPP+ W D ++ R+G L S FL+H L+ Sbjct: 172 EPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLK 226 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G AIVL LF G A E IR+ LLE+ I A++ +P +LFF T+I T + Sbjct: 227 ET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 279 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 +L + V I+A+ + GK + ++++ ++IL+ Y R++ + ++ Sbjct: 280 IVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKDVEKYAH 332 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + ++ + P + ++ + + +K+ Q ++L+ + Sbjct: 333 LANFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 388 >gi|265755688|ref|ZP_06090309.1| type I restriction-modification system DNA methylase [Bacteroides sp. 3_1_33FAA] gi|263234294|gb|EEZ19887.1| type I restriction-modification system DNA methylase [Bacteroides sp. 3_1_33FAA] Length = 529 Score = 237 bits (606), Expect = 4e-60, Method: Composition-based stats. Identities = 104/490 (21%), Positives = 187/490 (38%), Gaps = 59/490 (12%) Query: 1 MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-- 55 M + +L ++ L G TD ++L L+ + + + + Sbjct: 1 MAKKQTKITKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKDKIRH 60 Query: 56 -REKYLAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLG---STNTRNNLESYIASF 107 + + Y F+ T E L T ++ I + Sbjct: 61 EIVEVQGIHDEAFVEMQLSRPNQYMQDGVFFLTDETFWDKLILTAPTGMAIAFDTAIKTL 120 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 DN + + G L + + I+ ++ +YE+ ++ F Sbjct: 121 DDNEPKLKNALPQQIFTKTALEPGGLKSVVDEINKIDPK-KFTDHDLIGRVYEYFLQAFS 179 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + +F TP +V L +L+ T+YDP CG+GG A + Sbjct: 180 INADKEEGEFYTPHSIVELIASLI-----------EPFDGTVYDPCCGSGGMFVQATKFI 228 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + K + +GQE EP T+ + + IR + ST S D Sbjct: 229 EAHGGNTKA---VNVYGQESEPATYRLAKMNLAIRGISYHLGDKAV------STFSDDQH 279 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346 +F Y ++NPPF K + E R+ G G+P S+ + +++H+ NKL Sbjct: 280 KDLKFDYIMANPPFNLKKYAEYGEFE------TAPRWKGYGVPPASNANYAWILHILNKL 333 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 ++ G A +L++ L + EIR+ L+END IEAI+ LP ++F+ T+I+ Sbjct: 334 DVNH---GIAGFLLANGALDDSDT----LEIRKRLIENDKIEAIIVLPRNMFYSTDISVT 386 Query: 407 LWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 LWIL+N K R G++ I+ ++I KK + + + ++ IY Sbjct: 387 LWILNNNKKGGPWHGRQLRNRTGEILFIDLRTWNSNI--YEKKYVRLTETEISRVCQIYF 444 Query: 458 SRENGKFSRM 467 + + F+ Sbjct: 445 NWQTENFAEY 454 >gi|301633155|gb|ADK86709.1| type I restriction-modification system, M subunit [Mycoplasma pneumoniae FH] Length = 543 Score = 237 bits (605), Expect = 5e-60, Method: Composition-based stats. Identities = 108/584 (18%), Positives = 209/584 (35%), Gaps = 89/584 (15%) Query: 1 MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48 M + T + IW+ A+ L G DF +L R L L Sbjct: 1 MEKKRTEQRNGVEKKIWEIADKLRGTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRN 60 Query: 49 --EPTRSAVREKYLA---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 + + + + Y A + I + F F N + + + L Sbjct: 61 NPDFSYENLTDDYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDI 120 Query: 104 IASFS-----------DNAKAIFEDFDFS--STIARLE-KAGLLYKICKNFSGIELHP-D 148 ++ K +F+DF+ S + L + L ++ + +EL + Sbjct: 121 FDDIEKSTELGDGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFE 180 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + YE LI + + +F TP+DV L + + D + Sbjct: 181 KNSIDAFGDAYEFLISMYAQNAGKSGGEFFTPQDVSELLARIAIGKKDT--------VDD 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YD CG+G L + + + ++ +GQE+ T+ +C M++ ++ Sbjct: 233 VYDMACGSGSLLLQVIKVL-----GKEKTSLVSYYGQEINHTTYNLCRMNMILHNID--- 284 Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + NI TL+ + F +SNPP+ W DK + Sbjct: 285 --YANFNIINADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSN-----LVS 337 Query: 321 LGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 RF L S + F++H L G AAIV L+ E IR Sbjct: 338 DVRFKDAGTLAPNSKADLAFVLHALYVLGQE----GTAAIVCFPGILYR---EGKEQTIR 390 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 ++L++ + ++A++ LP++LF T+IAT + +L +K +++ + I+ ++ + + Sbjct: 391 KYLVDQNFVDAVIQLPSNLFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFVREK--- 445 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 K ++ +I+D + S++ R K+ ++ L Sbjct: 446 -KNNRLSPKNIEKIVDCFNSKKEE------ANFAKAVERDKIRE---SNYDLTVGKYVNS 495 Query: 499 EADITWRKLSPLHQS--FWLDILKPMMQQIYPYGWAESFVKESI 540 EA+ + L+ S +D K + +I ++I Sbjct: 496 EAEKEELDIKVLNHSIDEIVDKQKDLRTKIKDIIQDIKVDFDNI 539 >gi|323438646|gb|EGA96389.1| type I restriction-modification system M subunit [Staphylococcus aureus O11] Length = 371 Score = 237 bits (605), Expect = 5e-60, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 164/399 (41%), Gaps = 43/399 (10%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP+ V + Sbjct: 7 ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 66 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 ++ D D +R +YDPTCG+G L K + GQE Sbjct: 67 AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 108 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + ML+ + R + +I+ TL F G F ++NPP+ KW Sbjct: 109 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 163 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D E +G L S F+ H+ + L+ G A+VL LF Sbjct: 164 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 214 Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+ Sbjct: 215 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 269 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485 A++ + GK + ++D Q +I++ Y +E K+S + + P Sbjct: 270 ASNDFEK----GKNQNHLSDAQVERIINTYKCKETIDKYSYSATLQEIADNDYNLNIPRY 325 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + ++ + + + + +I + + Sbjct: 326 VDTFEEEEPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 364 >gi|300725853|ref|ZP_07059318.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP) [Prevotella bryantii B14] gi|299776866|gb|EFI73411.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP) [Prevotella bryantii B14] Length = 598 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 93/580 (16%), Positives = 191/580 (32%), Gaps = 64/580 (11%) Query: 1 MTEFTGSAA--SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + T L +W++A+ L + + +L LR + + + Sbjct: 1 MKQMTEKINIRKLEADLWESADLLRAGSKLTSSQYCMPVLALLFLRYAYSRFKMVEAELL 60 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SD 109 + + GG + +E A + Y E L + + L + S+ Sbjct: 61 KNRPSRGGRVMPVEPSDFAAKSALYLPREAQFDYLVNLSDDQPLGEAVNRAMTLVEEQSE 120 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 I + LL ++ + F+ D + V+ IYE+ + +F Sbjct: 121 QLTGILPKSY------TMFSDELLRELLRIFNNK--TLDEIGGDVIGRIYEYFLSKFAKA 172 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 V+ F TP+ +V + +L + DP CG+GG + V Sbjct: 173 VASDDGVFFTPKSLVKMLVNVLEPEQG-----------VMLDPACGSGGMFVQTGDFV-- 219 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + +GQE +C+ M + L N + D Sbjct: 220 NAGGMNANTQMTFYGQEKVEYNAQLCLMNMAVHGLNGRIVSGDEAN-----SFYHDAHNL 274 Query: 290 K-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLFLMH 341 + Y ++NPPF K + A GR GLP +IS+ + L++ + Sbjct: 275 AGKCDYVMANPPFNVDKVKAESASAA-------GRLPFGLPGVNAKTKEISNANYLWISY 327 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L GRA V++SS + + + +IR L+ ++ +V++ + F+ Sbjct: 328 FYAYLNDH----GRAGFVMASSA---TDSANKDRDIREKLVLTGDVDVMVSVGNNFFYTL 380 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 ++ LW K E + +V I+A + +T + + + I+ +Y E Sbjct: 381 SLPCSLWFFDKAKRLENKNRVLFIDARNYYTVVDRTLNEWSEWQLKNLQAIVHLYRG-EQ 439 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 K+ +++ Y R + + E + ++ + Sbjct: 440 DKYKALIN----EYWNALSEHAERHDSVAWQDRDMTFEKALGVLNSEEAMYKKYIKDQQG 495 Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561 +++ + + + ++A A Sbjct: 496 ALKKTKGKKEKDELKAIIASNEAELAVTLEAKDMVNEAIW 535 >gi|313634896|gb|EFS01302.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067] Length = 251 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 21/255 (8%) Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 ++ G KR I+++Q I+ +Y + K ++ D FG+ +I V RPLR++F+L Sbjct: 3 KMKKSMGNKRNEISEEQIMDIVSLYNETKQNKKIKIFDNEDFGFHKITVERPLRLNFMLS 62 Query: 492 KTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYPYGWAESFVKE 538 K + R++ + ++ L+ ++ I+ + + + Sbjct: 63 KERIERVKHEKVFQNLATSNKKGEAKEKQIEEGIALQQRIINTLNTNVSNEIIKNREIFT 122 Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598 K + + + + A +N KD AD DT L +YE++P + Sbjct: 123 KKLKEIFKKEGITVTSTVLKAILNGLSEKDETADICMRNKKTVEVDTELRDYESIPLKKD 182 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 IQ YF EV PHVPDA+I D+ +VGYEI F R FY+Y P R ++I E++ Sbjct: 183 IQKYFEIEVLPHVPDAWI--------DETATKVGYEIPFTRCFYEYTPIRSSKEILKEIQ 234 Query: 659 GVEAQIATLLEEMAT 673 +EA++A L+++ Sbjct: 235 KLEAEVAEQLKKVFG 249 >gi|328947117|ref|YP_004364454.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema succinifaciens DSM 2489] gi|328447441|gb|AEB13157.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema succinifaciens DSM 2489] Length = 580 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 95/482 (19%), Positives = 183/482 (37%), Gaps = 70/482 (14%) Query: 8 AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 +L + +W A+ L +G+ IL LR + + ++ + +Y G+ Sbjct: 6 LKTLKDNLWHAADVLRAGAHLAANKYGQPILGLIFLRYADILYKQHKAEIEAEYNKSKGT 65 Query: 66 NIDLESFVKVAGYS-FYNTSEY---SLSTLGSTNTRNNL----ESYIASFSDNAKAIFED 117 + Y FY E +++ + L I ++ + Sbjct: 66 RAEKSIKDISIKYCGFYLPPEAYYTTINDAPDDANKATLVKKAMETIERENEKMDGVLPK 125 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + + E+ LL I + F I P+ + + IYE + F + + F Sbjct: 126 -EVYGQLVPEEEPELLSNIMRIFMDI---PENISVDLFGEIYEFFLGEFALQEGKDGGTF 181 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP VV +L + + + DP CG+GG A+ + Sbjct: 182 YTPATVVRYMVEVLQPQNGE---------KKILDPACGSGGMFVQAVRFMHRHNKASDEV 232 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCL 296 +G E EP+T + +L+ + + I + ++ D F Y + Sbjct: 233 MKFRCYGVEKEPDTVKLAKMNLLLNNVRGE--------IVEANSFYSDPHNAVGNFDYVM 284 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPK---------------ISDGSMLFLM 340 +NPPF K + RF G+PK + + + L++ Sbjct: 285 ANPPFNVDEVVYD-------KVKDDPRFNIYGVPKNKSKTAKKGSDKKETVPNANYLWIS 337 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + A+ L N G+AA+V+++S AG E EIR+ ++E +I +V LP+++F Sbjct: 338 YFASSL----NQTGKAALVMANSA---SDAGGSELEIRKKMIEEGIISQMVTLPSNMFSS 390 Query: 401 TNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDI 455 + LW +KT++ ++ K+ I+A ++T + +K +D+Q + I + Sbjct: 391 VTLPATLWFFDKQKTQDAQKKDKILFIDARSIFTQVDRAHRK---FSDEQIKNLGIITRL 447 Query: 456 YV 457 Y Sbjct: 448 YN 449 >gi|118444367|ref|YP_878481.1| type I restriction-modification system DNA methylase [Clostridium novyi NT] gi|118134823|gb|ABK61867.1| type I restriction-modification system DNA methylase [Clostridium novyi NT] Length = 705 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 89/538 (16%), Positives = 190/538 (35%), Gaps = 56/538 (10%) Query: 9 ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +W A+ L ++ +L LR + + E + G Sbjct: 5 KKIERDLWDAADQLRANSKLTAAEYSMPVLGLIFLRYAYNRFLMVKEEIEENLPSRNGKK 64 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIA 125 + + + + L S ++ I + + +E S T Sbjct: 65 RPITKEDFESKSAIFLPEIARYDYLVSLTEDADIGKSINNAMKAIEKEYEKLKGSLPTNY 124 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + LL ++ + F+ EL V IYE+ + +F ++ +F TP +V Sbjct: 125 TIFDNELLRELLRKFNSDELRNAKGD--VFGRIYEYFLNKFAMTGAQEGGEFFTPISLVQ 182 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 + ++ + DP CG+ G + + G+ +GQ Sbjct: 183 MIVNVIEPEQGIVL-----------DPACGSAGMFVQTGHFIQSHGASANDKV--TFYGQ 229 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKK 304 E + M + LE I +G+T +D + +Y ++NPPF Sbjct: 230 EKAELNTKLARMNMAVHGLEG--------KILEGNTFYEDKHELLGKCNYVMANPPFNVD 281 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLFLMHLANKLELPPNGGGRAA 357 + K R GLP +S+ + L++ + + L GRA Sbjct: 282 GVDSE-------KIKTDPRLPFGLPGVNKKSKAVSNANYLWIQYFYSYLNEK----GRAG 330 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 V++SS AG GE ++R L++ + ++ I+++ + F+ ++ LW K+E+ Sbjct: 331 FVMASSA---TDAGHGEKDVRERLIKTNDVDVIISIGNNFFYTRSLPCTLWFFDKNKSED 387 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN------GKFSRMLDYR 471 ++ KV +I+A +++ + I+ +Y + ++ + Sbjct: 388 KKDKVLMIDARNIFRKVNRTINDFSEEQLKNITSIVWLYRGQNERYLKLVAEYINDYSSK 447 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 + +L ++ ++D+ L R + + + + LK + + I Y Sbjct: 448 ANFINKKAILFEDKLHELIDQ--LERFNSFKLVADENKEIREEYYTSLKELQKDIDNY 503 >gi|13508081|ref|NP_110030.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129] gi|12229979|sp|P75436|T1MD_MYCPN RecName: Full=Putative type I restriction enzyme MpnORFDP M protein; Short=M.MpnORFDP gi|1674186|gb|AAB96142.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129] Length = 543 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 105/584 (17%), Positives = 210/584 (35%), Gaps = 89/584 (15%) Query: 1 MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48 M + T + IW+ A+ L G DF +L R L L Sbjct: 1 MEKKRTEQRNGVEKKIWEIADKLRGTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRN 60 Query: 49 --EPTRSAVREKYLA---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 + + + + Y A + I + F F N + + + L Sbjct: 61 NPDFSYENLTDDYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDI 120 Query: 104 IASFS-----------DNAKAIFEDFDFS--STIARLE-KAGLLYKICKNFSGIELHP-D 148 ++ K +F+DF+ S + L + L ++ + +EL + Sbjct: 121 FDDIEKSTELGDGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFE 180 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + YE LI + + +F TP+D+ L + + D + Sbjct: 181 KNSIDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDT--------VDD 232 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YD CG+G L + + + ++ +GQE+ T+ +C M++ ++ Sbjct: 233 VYDMACGSGSLLLQVIKVL-----GKEKTSLVSYYGQEINHTTYNLCRMNMILHNID--- 284 Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + NI TL+ + F +SNPP+ W DK + Sbjct: 285 --YANFNIINADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSN-----LVS 337 Query: 321 LGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 RF L S + F++H L G AAIV L+ E IR Sbjct: 338 DVRFKDAGTLAPNSKADLAFVLHALYVLGQE----GTAAIVCFPGILYR---EGKEQTIR 390 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 ++L++ + ++A++ LP++LF T+IAT + +L +K +++ + I+ ++ + + Sbjct: 391 KYLVDQNFVDAVIQLPSNLFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFVREK--- 445 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 K ++ +I+D + S++ + ++ + ++ L Sbjct: 446 -KNNRLSPKNIEKIVDCFNSKKEEANFA---------KSVERDKIRESNYDLTVGKYVNS 495 Query: 499 EADITWRKLSPLHQS--FWLDILKPMMQQIYPYGWAESFVKESI 540 EA+ + L+ S +D K + +I ++I Sbjct: 496 EAEKEELDIKVLNHSIDEIVDKQKDLRTKIKDIIQDIKVDFDNI 539 >gi|323438363|gb|EGA96135.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11] Length = 386 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 92/401 (22%), Positives = 165/401 (41%), Gaps = 44/401 (10%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E+ L+ K+ N + + ++ + YE LI RF + + A +F TP+ V + Sbjct: 28 ERTALISKVMVNLDDLPFIHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 87 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 ++ D D +R +YDPTCG+G L K + GQE Sbjct: 88 AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 129 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 T+ + ML+ + R + +I+ TL F G F ++NPP+ KW Sbjct: 130 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 184 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D E +G L S F+ H+ + L+ G A+VL LF Sbjct: 185 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 235 Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+ Sbjct: 236 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 290 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485 A++ + GK + ++D Q +I++ Y +E K+S + + P R Sbjct: 291 ASNDFEK----GKNQNHLSDAQVERIINTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 345 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 ++ L+ K + + ++++ Sbjct: 346 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKEL 386 >gi|268600937|ref|ZP_06135104.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein [Neisseria gonorrhoeae PID18] gi|268683951|ref|ZP_06150813.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein [Neisseria gonorrhoeae SK-92-679] gi|268585068|gb|EEZ49744.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein [Neisseria gonorrhoeae PID18] gi|268624235|gb|EEZ56635.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein [Neisseria gonorrhoeae SK-92-679] Length = 401 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 84/363 (23%), Positives = 149/363 (41%), Gaps = 49/363 (13%) Query: 111 AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164 K +F+ DF +T +RL +K L + K + ++ + + + YE+LI Sbjct: 15 IKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAYEYLIS 72 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + +F TP+ V L L + + + K +YDP CG+G L A Sbjct: 73 NYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSLLLQAK 124 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + GQE+ T+ + M + + + +I+ G TL+ Sbjct: 125 KQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELGDTLTN 173 Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341 + F +SNPP+ W D RF P L S F++H Sbjct: 174 PKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAFILH 228 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 N L +G GRAAIV + G A E +IR++L+E + +E ++AL +LF+ T Sbjct: 229 ALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPNLFYGT 281 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 IA + +LS K +Q I+A + N ++ ++ +I+ ++ + + Sbjct: 282 CIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLFADKAD 334 Query: 462 GKF 464 Sbjct: 335 VPH 337 >gi|145641328|ref|ZP_01796907.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae R3021] gi|145273871|gb|EDK13738.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus influenzae 22.4-21] Length = 357 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 72/385 (18%), Positives = 145/385 (37%), Gaps = 41/385 (10%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ ++YE+ + RF + + TP+ +V L +L +YDP Sbjct: 7 DILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPYSGRVYDP 55 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 G+GGF + + + +GQE P T + M IR ++ D + Sbjct: 56 AMGSGGFFVQTERFITAHQGNIN---NVSIYGQESNPTTWKLAAMNMAIRGIDYDFGKYN 112 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + ++ K+ + ++NP F D + R+ G+P Sbjct: 113 A------DSFTQPQHIDKKMDFIMANPHFN-------DKDWWNESLADDPRWAYGIPPKG 159 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + ++ H+ L GR VL++ + + + S E EIR+ ++E DL+EA+VA Sbjct: 160 NANYAWIQHMIYHLSP----NGRMGFVLANGSMSSSQTNS-EIEIRKAIIEADLVEAMVA 214 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP LF ++ +W L+ K +R+G+V I+A + R D +I Sbjct: 215 LPDKLFTNVELSACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFTADDIAKI 269 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRKLSPLH 511 D + + + S + + + + F+L E + + Sbjct: 270 ADTFHTWQK---SDGYENQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDDGVPFAEKM 326 Query: 512 QSFWLDILKPMMQQIYPYGWAESFV 536 Q+ + + + + + Sbjct: 327 QNLTALLKEQFAKSAELEAEIKKNL 351 >gi|126176533|ref|YP_001052682.1| N-6 DNA methylase [Shewanella baltica OS155] gi|125999738|gb|ABN63813.1| N-6 DNA methylase [Shewanella baltica OS155] Length = 565 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 82/464 (17%), Positives = 173/464 (37%), Gaps = 53/464 (11%) Query: 6 GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + ++ +WK+A+ L + + ++ ++ LR + + + G Sbjct: 5 ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVTTLPSRG 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFS 121 G +L + + + L + +N I NA E + Sbjct: 65 GKTRELTKEDFSKKSAIFLKPDAQFDALIALTDADNRAEAI----INAMDSIEADYTNLR 120 Query: 122 STIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + + E + + + + IYE+ + +F + + +F T Sbjct: 121 NQLPKQEYNNIPNDVLGMLLRTLNPEELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFT 180 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P +V L ++ ++DP CG+GG + + +A P Sbjct: 181 PVSLVQLLVNVI-----------EPDHGKIFDPACGSGGMFVQSAHFMARHAQD---PHE 226 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLS 297 L +G E T + + + LE + S T D G Y ++ Sbjct: 227 LTFYGHEKNRVTTRLAKMNLAVHGLEGNVEGGESA-----ITYYNDPHEGLFGTVDYVMA 281 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPN 351 NPPF V+ + G+ R GLP K+S+G+ L++ + + L N Sbjct: 282 NPPFNVD------EVDADKIKGDKHRLPFGLPGVNKNKKVSNGNYLWIQYFYSYL----N 331 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GRA V+SS AG E+++R L++ ++ ++ + ++ F+ + LW L+ Sbjct: 332 DTGRAGFVMSSQA---SSAGRDEAKVREQLVKTGDVDIMIDIRSNFFYTRTVPCQLWFLN 388 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 K + KV +++A +++ R +K + +Q++ + + Sbjct: 389 KNKPAHLKDKVLMLDARNVY---RKVTRKIYDFSPEQQQNLTAV 429 >gi|116511952|ref|YP_809168.1| Type I restriction-modification system methyltransferase subunit [Lactococcus lactis subsp. cremoris SK11] gi|116107606|gb|ABJ72746.1| Type I restriction-modification system methyltransferase subunit [Lactococcus lactis subsp. cremoris SK11] Length = 462 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 170/418 (40%), Gaps = 60/418 (14%) Query: 82 NTSEYSLSTLG-----STNTRNNLESYIASFSDNAK----------AIFEDFDFSST--- 123 +Y+ L ++ + +F+ NAK +F D + T Sbjct: 5 IAPDYTWEKLVKKIETHKIKASDFQDMFDAFNTNAKRNPTEEDDFANVFSDVNLGDTRLG 64 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + E+A L I + D V+ ++YE+LI +F + + +F TP +V Sbjct: 65 TSTNERAKALNDIVLMINDFAFKDDNG-HDVLGDVYEYLIGQFAANAGKKGGEFYTPHEV 123 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + ++ +YDP G+G L + + + Sbjct: 124 SQILAKIVTAD-----AHRSQEQFRVYDPAMGSGSLLLTVQKEL----PGGEREGSVEFF 174 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------FHYC 295 GQEL T+ + +++ + N+++ TL D ++ F Sbjct: 175 GQELNTTTYNLARMNLMMHDVNYRNM-----NLRRADTLDADWPYDEKEGTQIPRKFDAV 229 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ +KW + +++E + RF G G+ S F++H L+ G Sbjct: 230 VANPPYSQKW--ETKTIDRE----KDVRFKGYGVAPASKADYAFVLHGLYHLDNK----G 279 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 AIVL LF G E +IR+ +++N+L++A++ LP +LF+ T+I T + + Sbjct: 280 TMAIVLPHGVLFRGA---SEGKIRKNIIDNNLLDAVIGLPANLFYGTSIPTCILVF-KGI 335 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 ++ V I+A++ + GK + +++D R I++ Y SR++ + + Sbjct: 336 EARQKRDVLFIDASNDFVK----GKNQNKLSEDNLRTIIETYTSRKDVEKYAHVASLD 389 >gi|330881904|gb|EGH16053.1| Type I restriction-modification system DNA methyltransferase subunit [Pseudomonas syringae pv. glycinea str. race 4] Length = 482 Score = 234 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 88/483 (18%), Positives = 165/483 (34%), Gaps = 59/483 (12%) Query: 8 AASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLA 61 L + +W+ A+ L +++ +L LR R LE S++ + A Sbjct: 6 LQQLESDLWEAADQLRANSKLTASEYSMPVLGLIFLRHATTRFYALLEEVESSIPAR--A 63 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 G D + Y L N+ + I + D D + Sbjct: 64 VGQLREDRIKLGFQGKAAIYLPEIARYEYLAGLPASENIAAAIHEAMQAIEDSVTDQDGN 123 Query: 122 STI-ARLEKA------GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + L K LL + K F+ V IYE+ + F ++ Sbjct: 124 KLLAGALPKNYHGLERDLLPDLIKIFNR--PALQNTSGDVFGRIYEYFLNEFAKSGAQEG 181 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V + ++ T+ DP CG+ G + + D Sbjct: 182 GEFFTPPSLVRMIVKVI-----------EPDHGTVLDPACGSAGMFVQTGHFMEDVRHKL 230 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293 + +GQE + + + LE I G+T +D Sbjct: 231 THDADITFYGQEKAEVNSKLARLNLAVHGLEG--------KILLGNTFYEDQHQLVGGCD 282 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELG--RFGPGLP-------------KISDGSMLF 338 + ++NPPF + + + R GLP IS+G+ L+ Sbjct: 283 FVMANPPFNVDGVQVAKIKSQVGTLEDNPPKRLPFGLPGTAGKSRGKDATETISNGNSLW 342 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + + + L N GRA V+++S AG+ + +IR+ L+E ++ ++++ F Sbjct: 343 IQYFYSYL----NATGRAGFVMAASA---SDAGNKDRDIRQQLIETGHVDVMMSIGPKFF 395 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + ++ LW K +ER V +I+A +++T + I +Y Sbjct: 396 YTRSLPCTLWFYDKSKPKERLDGVLMIDARNVYTVVSARSHVFTEEQLSNLSAITWLYRG 455 Query: 459 REN 461 + Sbjct: 456 QSE 458 >gi|294850846|ref|ZP_06791547.1| type I restriction enzyme M protein [Staphylococcus aureus A9754] gi|294822296|gb|EFG38764.1| type I restriction enzyme M protein [Staphylococcus aureus A9754] Length = 356 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 159/395 (40%), Gaps = 44/395 (11%) Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 N + + ++ + YE LI RF + + A +F TP+ V + ++ D D Sbjct: 3 NLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD-- 60 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 +R +YDPTCG+G L K + GQE T+ + Sbjct: 61 ------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMN 104 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ML+ + R + +I+ TL F G F ++NPP+ KW D E + Sbjct: 105 MLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFS 159 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 G L S F+ H+ + L+ G A+VL LF G A E IR Sbjct: 160 GY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIR 207 Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R+L+E + +EA++ LP ++F+ T+I T + + +K ++ V I+A++ + Sbjct: 208 RYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK---- 261 Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 GK + ++D Q +I+D Y +E K+S + + P R ++ Sbjct: 262 GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPI 320 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 L+ K + + ++++ Sbjct: 321 DLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 355 >gi|119471838|ref|ZP_01614171.1| N-6 DNA methylase [Alteromonadales bacterium TW-7] gi|119445328|gb|EAW26617.1| N-6 DNA methylase [Alteromonadales bacterium TW-7] Length = 698 Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 105/604 (17%), Positives = 205/604 (33%), Gaps = 83/604 (13%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T L +W A++L D K ++ +L L+ + + + ++ Sbjct: 2 NTEQLKKLEKSLWSAADNLRANSDLKSNEYATPVLGLIFLKFADNKYSKVENEIVAEHAK 61 Query: 62 FGGSN-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKA 113 GS S V + FY L + ++ I Sbjct: 62 LKGSRREKPLSEVAIEKCGFYLPEHARYDYLLNRPEEEDMAKAIKRAMELVEEHKKELDG 121 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I ++ + L ++ K FS I P ++ IYE + +F +G Sbjct: 122 ILPKDEYFALTRT--DRTLPAQLLKTFSDI---PRDATGDILGKIYEFFLGKFALAEGQG 176 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP VV L ++ T++DP CG+ G + + D Sbjct: 177 GGVFYTPTSVVRLMVEVI-----------EPYKGTVFDPACGSAGMFVQSQQFIEDHNEE 225 Query: 234 HKIPPILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + +GQE +T + + + L + I+Q ++ ++ F Sbjct: 226 LDLLGEKHDENKLFVYGQEKTLDTVKLAKMNIAVNGLRGE--------IKQANSYKENPF 277 Query: 288 TG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP--------------KI 331 ++F Y L+NPPF D + RF G+P + Sbjct: 278 DSYQKFDYVLANPPFNVDDVPVADV-------EDDIRFNEYGIPKKKTKAKKKDEGKETV 330 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 +G+ L++ A L+ GRAA+V+++S A E++IR+ L+EN+LI ++ Sbjct: 331 PNGNYLWINLFATSLKEK----GRAALVMANSA---SDARHSEADIRQTLIENNLIYGML 383 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP+++F+ + LW K + + I+A +++T + R + +Q Sbjct: 384 TLPSNMFYTVTLPATLWFFDKDKQD---DNILFIDARNVFTQVDRA---HREFSPEQINN 437 Query: 452 I--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL-- 507 + + + +F ++D + V + L + D + Sbjct: 438 LAMISKLHKGKRREFVHLIDTYFEKGMDLLVEN--KKQVEPVSEQLLDVLDDKQGKIAVG 495 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV-KASKSFIVAFINAFGR 566 + Q L+ L+ + K +++ + K + F A Sbjct: 496 GLVGQWKELNTLQKKHSDYQASVVGKFNDKTLVETINKAQHSLQKNFEPFFAALHQGLKE 555 Query: 567 KDPR 570 D Sbjct: 556 LDKT 559 >gi|288932530|ref|YP_003436590.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642] gi|288894778|gb|ADC66315.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642] Length = 581 Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 88/467 (18%), Positives = 178/467 (38%), Gaps = 48/467 (10%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + A+ + G + V+L F + L +A+ E +++ G + Sbjct: 86 TRDKLFRSLKAGADLIRGGVD---YK-VLLLFLFYKALSDKW----NALVESFVSEGHTK 137 Query: 67 IDLESFVKVAGYSFYNTSEYSL----------STLGSTNTRNNLESYIASFSDNAKAIFE 116 Y Y+ +E L TL S + + + + E Sbjct: 138 TQAYLLANRKYYVLYDENEQKLLTWHEVTKKRETLTELANALTRISRLNEKLSDLEKLVE 197 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F I+ + + I + F+ ++ +P V+ + Y ++ F + ++ + Sbjct: 198 ILGFKGFISE-DNLHTIESIIQIFNTLDF--SKLPYDVIGDAYMWILNYFAPQKAKE-GE 253 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TP ++V L LL D + T+ DP G+G L + ++V + Sbjct: 254 NYTPIEIVKLVVNLLDIEVDE-----ESGVVTVLDPALGSGSMLIVSRDYVREKYGKEGE 308 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 ++ +GQE + +++ +++ I G +L+ F + Y + Sbjct: 309 DVLM-LYGQERNEIMGVIAKMNLILHDIKNYE-------IFIGDSLANPRFP--QCDYVV 358 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPP+ + + +E +F LP + ++ + + Sbjct: 359 ANPPWNQDY-NVNGLIEDPKVKKIYTQFTSTLPPKNSMDWGWIQLMLYFARK------KV 411 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 I+L + LF G E IR ++ DLIEA+V LP LF+ T + I + K E Sbjct: 412 GIILDNGALFRGG---SEKRIREAIVRRDLIEAVVLLPEKLFYNTGAPGCVIIFNKNKPE 468 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 ER+GK+ INA++ + ++ + + +I+D Y ++ K Sbjct: 469 ERKGKILFINASNEYEKHPEV-RRLNRLGEKNIEKIVDAYREFKDIK 514 >gi|254518116|ref|ZP_05130172.1| type I restriction-modification system DNA methylase [Clostridium sp. 7_2_43FAA] gi|226911865|gb|EEH97066.1| type I restriction-modification system DNA methylase [Clostridium sp. 7_2_43FAA] Length = 705 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 86/568 (15%), Positives = 195/568 (34%), Gaps = 66/568 (11%) Query: 9 ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +W+ A+ L +++ +L LR + + + G Sbjct: 5 KKIEKDLWEAADQLRANSKLTASEYSMPVLGLIFLRHAYNRFLVVKEEIEATLPSRNGRK 64 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + ++ + Y L ++ I + + E + + + Sbjct: 65 RPVTQEDFMSKSAIYIPQIARYDYLLDLEEGADIGKAINDAMKSIEE--EYETLAGALPK 122 Query: 127 ---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + LL + + F+ EL V IYE+ + +F ++ +F TP + Sbjct: 123 NYNIFDNDLLADLIRIFNSDELQ--RATGDVFGRIYEYFLNKFAMSGAQEGGEFFTPISL 180 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V + ++ ++DP CG+ G + V G++ + + Sbjct: 181 VQMIVNVI-----------EPEGGIVFDPACGSAGMAVQTGHFVESHGNNANDK--ITFY 227 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG 302 GQE + + + L + QG+T +D + + ++NPPF Sbjct: 228 GQEKADLNTKLAKMNLAVHGLNG--------KVIQGNTFYEDKHELLGKCDFVMANPPFN 279 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLFLMHLANKLELPPNGGGR 355 + K R GLP +S+G+ L++ + L GR Sbjct: 280 VDGVDSE-------KIKADPRLKYGLPGISSKGKSVSNGNYLWIQYFNTYLNKT----GR 328 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A V++SS AG E +IR L+ + ++ I+++ + F+ ++ LW K Sbjct: 329 AGFVMASSA---TDAGGKEKDIRESLVRSGDVDVIISIGNNFFYTRSLPCTLWFFDKNKL 385 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSREN------GKFSR 466 E+ + KV +I+A +++ R + + +Q + I+ +Y ++ Sbjct: 386 EKNKDKVLMIDARNIF---RKVNRTINDFSPEQLKNLTSIVWLYRGENEKYLKLIKEYIV 442 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 ++ + ++D+ L + + ++ + + LK + + + Sbjct: 443 EYSNKSEKINEKSKEFERVLQLLVDQ--LEEFNSFKLIGEEDKEKKAEYYESLKALEKDM 500 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASK 554 Y + + I+ K + Sbjct: 501 DKYFIDKEKLNNEIQDYLNKVKSYTDNA 528 >gi|224023954|ref|ZP_03642320.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM 18228] gi|224017176|gb|EEF75188.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM 18228] Length = 640 Score = 233 bits (594), Expect = 9e-59, Method: Composition-based stats. Identities = 101/607 (16%), Positives = 206/607 (33%), Gaps = 80/607 (13%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +W++A+ L + +L LR + + + + + GG + Sbjct: 6 KLEAELWESADLLRQGSKLTSNQYCMPVLALLFLRYAYSRYKLVEAEILKDRPSRGGRVM 65 Query: 68 DLESFVKVAGYSFYNT--SEYSLSTLGSTNTRN-------------------NLESYIAS 106 +E A + Y +++ N + N + Sbjct: 66 PVEPSDFEAKSALYLPREAQFDFLVNLPDNITSAGLRNKDGQPVNSLGEAVNNAMQLVEE 125 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S+ + + LL ++ + F+ + D + ++ IYE+ + +F Sbjct: 126 QSEQLTGVLPK------TYTIFADDLLRELLRIFNNKTI--DEIGGDIIGRIYEYFLSKF 177 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 V+ F TP+ +V + +L ++DP CG+GG + Sbjct: 178 AKAVASDDGVFFTPKSLVKMLVNVLEPEQG-----------VMFDPACGSGGMFVQTGDF 226 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V + + GQE +C+ M + L N + D Sbjct: 227 V--NAAGMNANTQMTFFGQEKVEYNAQLCLMNMAVHGLNGRIVSGDEAN-----SFYHDA 279 Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLF 338 F + Y ++NPPF K + A GR GLP ++ + + L+ Sbjct: 280 FNLAGKCDYVIANPPFNVDKVKSESAFNA-------GRLPFGLPGVNAKTKEVGNANYLW 332 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + + L N GRA V++SS + + + +IR L++ ++ +V++ + F Sbjct: 333 INYFYAYL----NERGRAGFVMASSA---TDSSNKDRDIREQLVKTGHVDVMVSVGNNFF 385 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + ++ LW K EE R KV I+A +T + + + I+ +Y Sbjct: 386 YTLSLPCSLWFFDKAKREENRDKVLFIDARKYYTVVDRTLNEWTEWQLLNLQAIVHLYRG 445 Query: 459 RENGKFSRMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + + + Y + L +LD + + +TW + + Sbjct: 446 ETDKYQALLEKYNQTISEAVNSISEESLSFFPLLDSETAGQFNSSLTWLN---SPWNNYD 502 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 ++ + + QI +E +K E K +++ A F + +T Sbjct: 503 ELSRNLNGQIEQTKSCVRLAEERLKKRELKPMRL-AGDKFCKVLEEILTII-EEHEWLTG 560 Query: 577 V--NGEW 581 GE+ Sbjct: 561 KFGKGEY 567 >gi|312114646|ref|YP_004012242.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100] gi|311219775|gb|ADP71143.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100] Length = 518 Score = 233 bits (594), Expect = 9e-59, Method: Composition-based stats. Identities = 94/465 (20%), Positives = 177/465 (38%), Gaps = 56/465 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 L+ ++ A+ LW + + + +L LR++E E + + Sbjct: 1 MATDLNELSKTLFAAADKLWTNSALRPDQYAQPVLALIALRQMEAKFETVHAQL---APK 57 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-DFDF 120 F G + + G F E S L + +L + + + K I + + D Sbjct: 58 FTGRLKPKPADYQARGAVF-LPPEARFSRLLALPGTADLGAELN---EAMKGIADANPDL 113 Query: 121 SSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 +S + R L +I + + P + I+E+ + F S + ++ Sbjct: 114 ASALPRGYGNIPNDTLREILRLLA-----PLKIEGDAYGLIFEYFMGEFASSFMQKGGEY 168 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V L ++ + DP CG+GG + V Sbjct: 169 FTPASIVKLIVEVI-----------EPFHGAILDPACGSGGMFVHSAEFVRRHHKA--PA 215 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCL 296 + G E +T +C + + L D I++ ++ D +F + + Sbjct: 216 SEIAVFGVEKMSDTLRLCRMNLAVHGLSGD--------IREANSYYDDPHKLIGKFDFVM 267 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF + K V K RF GLP +++ + L++ L N GRA Sbjct: 268 ANPPFNQPEVDQKRLVNDAGKV--DARFPLGLPSVNNANYLWINQFFAAL----NATGRA 321 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 V+++S AG E EIRR L+++ ++ IVA+ ++F+ + LW L K Sbjct: 322 GFVMANSA---SDAGGSEREIRRKLIDSGAVDCIVAVGPNMFYTVTLPVTLWFLDKGKAT 378 Query: 417 -ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV 457 +R +V I+A L+ R E + R+ + + I+ ++ Sbjct: 379 GKRADEVLFIDARHLF---RQETRAHRVFDPEHIDFLGNIVRLWR 420 >gi|304310387|ref|YP_003809985.1| Type I restriction-modification system DNA methyltransferase subunit [gamma proteobacterium HdN1] gi|301796120|emb|CBL44326.1| Type I restriction-modification system DNA methyltransferase subunit [gamma proteobacterium HdN1] Length = 731 Score = 233 bits (594), Expect = 1e-58, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 189/568 (33%), Gaps = 57/568 (10%) Query: 7 SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + L N +W+ A+ L ++ +L LR + A + A Sbjct: 2 NVQQLENELWEAADQLRANSKLTAAEYSMPVLGLIFLRHADNRF----KAYLPEIEADIP 57 Query: 65 SNIDLESFVKVAGYSF------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + ++ F Y + S + I + D +A E Sbjct: 58 PQVPAAQREELIKLGFQGKAAIYLPEAARFDRIASLPQGAKVGEIIDAAMDAVEA--EYP 115 Query: 119 DFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 S + R + LL + K F + V IYE+ + +F ++ Sbjct: 116 VLSGALPRGYAAFEPDLLADLVKIFDRPAI--KAATGDVFGRIYEYFLNKFAMSGAQEGG 173 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V + ++ + DP CG+ G + + D H Sbjct: 174 EFFTPPSLVRMIVGVIEPGHGLVL-----------DPACGSAGMFVQTGHFIEDV-RHQV 221 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHY 294 + + HGQE + +++ L+ + NI+QG+T + + Sbjct: 222 VNDSVTFHGQEKSDTNTKLARMNLVVHGLD-------ASNIRQGNTFYDQAEHLIGQCDF 274 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-------SDGSMLFLMHLANKLE 347 ++NPPF K + GR GLP S+ + L++ + L Sbjct: 275 VMANPPFNVDGVDTKKVEAQVDAVANGGRLPFGLPGTNAKTGAISNANSLWVQYFYAYL- 333 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N GRA V++SS AG+ + +IR L++ ++ ++A+ F+ ++ L Sbjct: 334 ---NDTGRAGFVMASSA---SDAGNKDRDIREQLVKTGHVDVMMAIGNKFFYTRSLPCTL 387 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 W K ++ + +V +I+A +++T + I+ ++ KF + Sbjct: 388 WFFDKGKPQDLQNQVLMIDARNVYTVVSARSHVFTDEQLANLNAIVWLHRGERE-KFIAL 446 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI-TWRKLSPLHQSFWLDILKPMMQQI 526 + P R+ D + L A + + + L + + Q Sbjct: 447 VARYQRQVDDWLAAIPARI--EADTAAVQTLAAPLQAFANQATLAELNADQAEDARIAQA 504 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASK 554 + + A + S Sbjct: 505 QLDAFKAELTTAQTDTATADAIAALLSA 532 >gi|304310051|ref|YP_003809649.1| Type I restriction-modification system methyltransferase subunit [gamma proteobacterium HdN1] gi|301795784|emb|CBL43983.1| Type I restriction-modification system methyltransferase subunit [gamma proteobacterium HdN1] Length = 713 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 82/462 (17%), Positives = 172/462 (37%), Gaps = 49/462 (10%) Query: 6 GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + ++ +WK+A+ L + + ++ ++ LR + + + G Sbjct: 5 ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVATLPSRG 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 G +L + Y E L + +N I D+ +A + + + Sbjct: 65 GKTRELTKEDFSKKSAIYLKPEAQFDYLIALTDADNRAEAIIHAMDSIEA--DYTNLRNQ 122 Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + E + + + + IYE+ + +F + + +F TP Sbjct: 123 LPKQEYNNIPNDVLGMLLRTLNPEELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFTPV 182 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L +L ++DP CG+GG + + + P L Sbjct: 183 SLVQLIVNVL-----------EPDHGKIFDPACGSGGMFVQSAHFMERHAQD---PHELT 228 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299 +G E T + + + LE + + T D G Y ++NP Sbjct: 229 FYGHEKNRVTTRLAKMNLAVHGLEGNVEGGEAA-----ITYYNDPHEGLFGTVDYVMANP 283 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGG 353 PF V+ + G+ R GLP K+S+ + L++ + + L N Sbjct: 284 PFNVD------EVDADKIKGDKRRLPFGLPGVNKNKKVSNANYLWIQYFYSYL----NDT 333 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+SS AG E+++R L++ ++ +V + + F+ + LW L+ Sbjct: 334 GRAGFVMSSQA---SSAGRDEAKVREQLVKTGHVDIMVDIRGNFFYTRTVPCQLWFLNKN 390 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 K + KV +++A +++ R +K + +Q++ + + Sbjct: 391 KPAHLKDKVLMLDARNVY---RKVTRKIYDFSPEQQQNLTAV 429 >gi|258515812|ref|YP_003192034.1| type I restriction-modification system, M subunit [Desulfotomaculum acetoxidans DSM 771] gi|257779517|gb|ACV63411.1| type I restriction-modification system, M subunit [Desulfotomaculum acetoxidans DSM 771] Length = 584 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 164/424 (38%), Gaps = 58/424 (13%) Query: 105 ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 SF + +F + + S +L + +L I + L T ++ N Y Sbjct: 178 ESFDSAFRGLFSEVNLDS--DKLGRNYEARNTMLCSIITEIAE-GLSEFTNETDLLGNAY 234 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+LI +F S + A +F TP+ + ++ + +++ I L D CG+ Sbjct: 235 EYLIGQFASGSGKKAGEFYTPQQISNILSRIVILDSQDPSTGKKPYINNLLDFACGSASL 294 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + H+ + I +GQE T+ + ML+ +D I G Sbjct: 295 LINVKKHL-------EPNSISQIYGQEKNITTYNLARMNMLLH-----RFKDSEFQIFHG 342 Query: 280 STLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPK 330 +L D + ++NPPF +WE + E RF GL Sbjct: 343 DSLLNDWDILNEMNPAKKLKCDAVVANPPFSYRWEPNDT-------LAEDFRFKSYGLAP 395 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S FL+H + L G AI+L LF G A E +IR LLE+ I+ I Sbjct: 396 KSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EEKIRTKLLEDGNIDTI 448 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + LP +LFF T I + +L K + V INA++ + GK++ I+ + Sbjct: 449 IGLPANLFFSTGIPVCILVLKKCK---KFDDVLFINASEYFDK----GKRQNILLPEHID 501 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +I+D Y R+ RR+ + + F L+ + A+ L+ + Sbjct: 502 KIVDTYQFRKEEDK--------KYSRRVSMKEIEKNGFNLNISRYVSTAAEEEIVDLADV 553 Query: 511 HQSF 514 + Sbjct: 554 KKKL 557 Score = 68.8 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 2/56 (3%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 M + L +W A+ L G DF +L F LR L E Sbjct: 1 MNDTQQK--QLGATLWAIADKLRGAMNPDDFRDYMLSFLFLRYLSDNYEEAAKKEL 54 >gi|254234630|ref|ZP_04927953.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719] gi|126166561|gb|EAZ52072.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719] Length = 519 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 90/459 (19%), Positives = 162/459 (35%), Gaps = 65/459 (14%) Query: 15 IWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72 +W A+ LW + + +F +L LR E + + Sbjct: 10 LWAVADQLWANTGLRPGEFSVPVLGLIFLRYAEKMYAAAEEKLGPIGSGGRRKVSKDDYL 69 Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LE 128 A + + S L + + + I + E+ D + R L Sbjct: 70 ---AEGVIFLPEKARFSYLQTLTEGDVIGLAINEAMKAVEE--ENVDLKGALPRNYVQLG 124 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +L ++ K P + +YE+ + F + + F TP +V L Sbjct: 125 -NKVLLELIKLLG-----PVDLSGDAFGKVYEYFLGNFALKEGQKGGVFYTPESIVKLIV 178 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++ ++DP CG+GG + + V + G E E Sbjct: 179 EII-----------EPFHGRIFDPACGSGGMFAQSADFVKRHHKTAMEE--ISIFGTEKE 225 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFHYCLSNPPFGK 303 T + + + L D ++ +T +D G RF + ++NPPF Sbjct: 226 QVTVNLNKMNLAVHGLSGD--------VRIANTYYEDPHEAVTRDGGRFDFVMANPPFNV 277 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 V+KE G RF G+PK + + L++ L N GRA V+++S Sbjct: 278 S------GVDKERLEG-DLRFPFGVPKTDNANYLWIQLFYASL----NQNGRAGFVMANS 326 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT--EERRGK 421 G A E IR+ L+E+ ++ IV++ ++ F+ + LW K ER K Sbjct: 327 A---GDARGSEQVIRQKLIESGAVDVIVSVGSNFFYTVTLPCTLWFFDRAKERDAERADK 383 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV 457 V I+A ++ R + R +Q ++ +Y Sbjct: 384 VLFIDARHIY---RQIDRAHRDWLPEQIEFLANVVRLYR 419 >gi|225573220|ref|ZP_03781975.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM 10507] gi|225039352|gb|EEG49598.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM 10507] Length = 606 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 100/551 (18%), Positives = 194/551 (35%), Gaps = 76/551 (13%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +W++A+ L + +L LR + + + + + GG + Sbjct: 6 KLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRYKMVETEILKNRPSRGGRVM 65 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NLESYIAS 106 LE+ A + Y E L + + N I Sbjct: 66 PLEASDFAAKSALYLPKEAQYDYLLNLPDDIASAAILNKDGHTMNSLGEVVNNAMQLIEE 125 Query: 107 FSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 S+ + DFS I L ++ + F+ L D V ++ IYE+ + Sbjct: 126 QSEQLTGVLPKSYTDFSDEI--------LSELLRIFNNSAL--DEVGGDIIGRIYEYFLN 175 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 +F ++ F TP+ +V + ++ L DP CG+GG + Sbjct: 176 KFAKNIASDDGVFFTPKSLVKMIVNII-----------EPKSGILLDPACGSGGMFIQSG 224 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + V S + +GQE +C+ M + L + N + Sbjct: 225 DFV--NHSGMNANNTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEAN-----SFYY 277 Query: 285 DLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI------SDGSML 337 D Y ++NPPF K + A GR G P + S+G+ L Sbjct: 278 DAHNLNGCCDYVMANPPFNVDKVKAESAESA-------GRLPFGTPAVNKNKEISNGNYL 330 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ + + L N GRA V++SS + + +IR L++ ++ +V++ + Sbjct: 331 WISYFYSYL----NENGRAGFVMASSA---TDSQGKDKDIREKLVKTGHVDVMVSVGNNF 383 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ ++ LW K+EE + KV I+A + +T + + I+ +Y Sbjct: 384 FYTKSLPCSLWFFDKGKSEETKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYR 443 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRM--SFILDKTGLARLEADITWRKLSPLHQSFW 515 + +Y+ + I L + + D A++E R Q ++ Sbjct: 444 GEIEKYHQLIAEYKNVLGKAISFEESLHLLKEELKDLQKRAKIEMKAAGRNDKKRVQVYY 503 Query: 516 LDILKPMMQQI 526 +++ ++I Sbjct: 504 DELIAAKNEEI 514 >gi|32476949|ref|NP_869943.1| type I restriction-modification system DNA methylase [Rhodopirellula baltica SH 1] gi|32447497|emb|CAD79086.1| type I restriction-modification system DNA methylase [Rhodopirellula baltica SH 1] Length = 720 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 100/586 (17%), Positives = 213/586 (36%), Gaps = 76/586 (12%) Query: 9 ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---G 63 L +W A++L +D+ +L LR E + + E A Sbjct: 18 EKLEADLWSAADNLRANSKLTSSDYFMPVLGIIFLRHAENRFDVATRQIEEDKAAGRMPK 77 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSS 122 ID + + A + + + +T+ L + + +D +AI E FD Sbjct: 78 RKVIDQDYVRRRA-LPLPDEARFDWIMQMATSGDKPLPALV---TDAMRAIEEKFDPLKG 133 Query: 123 TIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + + + +L + + F+ ++ V IYE+ + RF + + +F T Sbjct: 134 VLPKDYGIFEPQVLEDLMRLFNSEQIR--QATGDVFGRIYEYFLARFSIQKAHDNGEFFT 191 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P +V + ++ ++DP CG+GG + + + G Sbjct: 192 PSSLVQMLVNVI-----------EPDHGKVFDPACGSGGMFVQSSHFIEHEGGD--TAKR 238 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSN 298 V +GQE P+T + + + L + I + T +D + ++N Sbjct: 239 AVFYGQEKNPDTIRIAKMNLAVHGLTGE--------IGEAITYYEDQHNLVGGADFVMAN 290 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNG 352 PPF V+ E + R GLP K+++G+ L++ + + L Sbjct: 291 PPFNVDL------VDAERIKTDTDRLPFGLPGVNKQKKVANGNYLWISYFWSYLNEK--- 341 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GRA V+SS AG GE ++R ++ ++ ++++ ++ F+ ++ LW Sbjct: 342 -GRAGFVMSSQA---SSAGHGEKDVRERIVRTGDVDVMMSIRSNFFYTRSVPCELWFFDR 397 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSRENGKFSRMLD 469 K + +R V +++A ++ R + +Q I+ +Y ++ R + Sbjct: 398 GKPKAQRDHVLMVDARSVY---RKVNRTINDFAPEQMANLSSIVWLYRGQKK----RFVA 450 Query: 470 YRTFGYRRIKVL--------RPLRMSFILDKTGLARLEADITWRKL-SPLHQSFWLDILK 520 I + + L + + ++ KL + + L + Sbjct: 451 LVQRYLHSINIETQGCEPPLQELESTLDSVNDKTSAFVKELQRCKLVADAEKEPILAAVT 510 Query: 521 PMMQ-QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 + + +S K+ + + K K A+ + + AF Sbjct: 511 ELQEADTAYRKDRQSLWKDLVAYRKGKNEKPPATTKPQRSALAAFT 556 >gi|254167129|ref|ZP_04873982.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469] gi|197623985|gb|EDY36547.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469] Length = 573 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 89/537 (16%), Positives = 201/537 (37%), Gaps = 62/537 (11%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T+ + +L + A + G + V+L F + L + Sbjct: 80 TKTSSKRDTLIKTLKAGANYIRGGVD---YK-VLLIFLFYKALSDIW-------LAQVEK 128 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFS------ 108 + +A +Y + L S T L + I S Sbjct: 129 YMREGFTKTQAYLLANSDYYTLYDEDEQKLLTWHEVTKSRETTIELANAITRISRLNEKL 188 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + + + + F I + + I F+ ++ + V+ + Y ++ F Sbjct: 189 SDLQKLVDVLGFRGFINE-DNLHNIESIVDIFNSLDF--SKLSYDVIGDAYMWILNYFAP 245 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + ++ + TP+++V L LL + T+ DP G+G L ++ +V Sbjct: 246 QKAKE-GENYTPQEIVKLLVNLLDIQN----------GSTVLDPALGSGSMLIESWMYVR 294 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 D + ++ +GQE V +++ +++ +I G +L+ F Sbjct: 295 DNNKEAE----MMLYGQERNEIMGIVAKMNLILHDIKNY-------DIYIGDSLANPRF- 342 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + Y ++NPP+ K+ + + K G G P + ++ + Sbjct: 343 -QSCDYVIANPPWNLKYNVNALKQDPRVKKIYTTFVGNGFPSKNSMDWAWIQLMLY---- 397 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 + I+L + LF G E +IR +++ DLIEA++ LP LF+ T+ A + Sbjct: 398 --FSNKKVGIILDNGALFRGGK---EKKIREGIVKKDLIEAVILLPEKLFYNTSAAGAVI 452 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467 I + K E+R+ KV +INA++ + ++ + D+ ++I+ Y ++ + F+++ Sbjct: 453 IFNKNKPEDRKRKVIIINASNEYEKHPEV-RRLNKLGDEHIKKIVKAYRDFKDIEGFAKV 511 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + L +S +++ + E ++++ + + + + Sbjct: 512 VSIEEIEKNDFNLNVSLYVSPKVEEEDIDLQEEMQKFKEIEEKETKTVQEAVSYVEE 568 >gi|223040255|ref|ZP_03610533.1| type I restriction-modification system, M subunit [Campylobacter rectus RM3267] gi|222878508|gb|EEF13611.1| type I restriction-modification system, M subunit [Campylobacter rectus RM3267] Length = 598 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 98/436 (22%), Positives = 165/436 (37%), Gaps = 57/436 (13%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYK--ICKNFSGIELHPDTVPD--RVMSNIYE 160 SF +F + + S +L K L +C + I + ++ N YE Sbjct: 192 ESFDSTFYGLFSEVNLDS--DKLGKNYQLRNEMLCSIITEIAEKLAEFTNEIDLLGNAYE 249 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI +F + + A +F TP+ + ++ + +++ I L D CG+G L Sbjct: 250 YLIGQFAAGSGKKAGEFYTPQQISNILSRIVILDSHKPELGKRDFINNLLDFACGSGSLL 309 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + H+ + I +GQE T+ + ML+ + D I G Sbjct: 310 INVKKHL-------EPNSISQIYGQEKNITTYNLARMNMLLHGFK-----DSEFQIFHGD 357 Query: 281 TLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331 +L D ++NPPF +WE D E RF GL Sbjct: 358 SLLNDWSLLNEMNPAKKLECDAVVANPPFSYRWEPDDT-------LAEDFRFKSYGLAPK 410 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H + L G AI+L LF G A E +IR LL++ I+A++ Sbjct: 411 SAADFAFLLHGFHFLSK----NGTMAIILPHGVLFRGGA---EEKIRTKLLKDGNIDAVI 463 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T I + +L K V INA++ + GK++ ++ + + Sbjct: 464 GLPANLFFSTGIPVCILVLKKCKEP---DDVLFINASEYYEK----GKRQNVLLPEHIDK 516 Query: 452 ILDIYVSRENGK--FSRMLDYRTF---GYR----RIKVLRPLRMSFILDKTGLARLEADI 502 I++ Y R +SR + GY R P +++ + Sbjct: 517 IVETYQFRREDDKRYSRRVSMGEIEKNGYNLNISRYVSTAPKEEIIDIEEVAKELRTIEY 576 Query: 503 TWRKLSPLHQSFWLDI 518 +K H F ++ Sbjct: 577 DIKKAKDAHNIFLKEL 592 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGS 65 L + +W A+ L G DF +L F LR L E + ++Y+ Sbjct: 5 QQKQLGSALWGIADKLRGTMNADDFRDYMLSFLFLRYLSDNYETAANKELGKEYMDCEKE 64 >gi|224417842|ref|ZP_03655848.1| type I restriction-modification system, M subunit [Helicobacter canadensis MIT 98-5491] gi|253827182|ref|ZP_04870067.1| type I restriction-modification system methyltransferase subunit [Helicobacter canadensis MIT 98-5491] gi|313141384|ref|ZP_07803577.1| type I restriction-modification system [Helicobacter canadensis MIT 98-5491] gi|253510588|gb|EES89247.1| type I restriction-modification system methyltransferase subunit [Helicobacter canadensis MIT 98-5491] gi|313130415|gb|EFR48032.1| type I restriction-modification system [Helicobacter canadensis MIT 98-5491] Length = 596 Score = 229 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 157/389 (40%), Gaps = 54/389 (13%) Query: 102 SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 YI SF + +F + + S +L E+ LL ++ + L + Sbjct: 185 KYIENESFESRFRGLFSEVNLDS--DKLGKNYSERNILLCQVITEIAQ-GLSKFPNETDL 241 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI +F + + A +F TP+ V + + ++ ++ + D C Sbjct: 242 LGDAYEYLIGQFAAGSGKKAGEFYTPQQVSTILSRIVSLDSQDPSTGKKSKLKNILDFAC 301 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + I +GQE T+ + ML+ ++ D Sbjct: 302 GSGSLLINVRK-------QFGANSIGQIYGQEKNITTYNLARMNMLLHGVK-----DSEF 349 Query: 275 NIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG- 325 I G +L D +F ++NPPF +W+ + + E RF Sbjct: 350 QIHHGDSLLNDWNILNEMNPAKKMQFEVVVANPPFSYRWQPKE-------EMAEDFRFKN 402 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 GL S FL+H + L G AI+L LF G E +IR LLE+ Sbjct: 403 YGLAPKSAADFAFLLHGFHFLSDD----GTMAIILPHGVLFRGGV---EEKIRTKLLEDG 455 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 I+AI+ LP +LFF T I + +L K V +INA++ + GK++ I+ Sbjct: 456 NIDAIIGLPANLFFSTGIPVCVLVLKKCKKY---DDVLIINASEYFEK----GKRQNILL 508 Query: 446 DDQRRQILDIYVSRENGK--FSRMLDYRT 472 + +I++ Y R+ +SR + + Sbjct: 509 PEHIDKIIETYQYRKEDDKKYSRRVSMKE 537 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 17/44 (38%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP 50 L + +W A+ L G DF +L F LR L E Sbjct: 5 QQKKLGSTLWAIADKLRGAMNADDFRDYMLSFLFLRYLSDNYEE 48 >gi|160939174|ref|ZP_02086525.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC BAA-613] gi|158438137|gb|EDP15897.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC BAA-613] Length = 496 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 104/562 (18%), Positives = 196/562 (34%), Gaps = 81/562 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E T + + + +W L D +G + T L L + ++Y Sbjct: 1 MLEQTTT---IISKVWGMCNPLRDDGVS--YGDYLEQLTYLIFL---------KMSDEYA 46 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLST---LGSTNTRNNLESYIASFSDNAKAIFED 117 + + G S Y+ S L + ++ + + A I Sbjct: 47 K--------PPYKRDTG----IPSGYTWSDMNTLKGAELEDQYKATLEKLGEQA-GILGQ 93 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F + ++ A +LY++ + + + + V IYE L+++ ++ GA + Sbjct: 94 I-FKGAVNKISNAAILYRVVQMINNEKWV--AMSSDVKGEIYEGLLQKNAEDIKSGAGQY 150 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------ 231 TPR ++ L P ++T+ DP CG+GGF A + +AD Sbjct: 151 FTPRPLIRAMVRCL----------RPEPMKTIADPCCGSGGFFLAAQSFLADPNNYALDR 200 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +G E+ P T+ + + + + I G L D G R Sbjct: 201 EQKGFLKNETFYGNEIVPATYKTALMNLYLHNIGDIYGNVP---ITLGDALLTD--PGYR 255 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELP 349 Y ++NPPFGKK E E ++ + R S+ + F+ H+ L+ Sbjct: 256 VDYVMTNPPFGKKSSITFTNEEGEQEDEDLVYNRQDFWTT-SSNKQLNFVQHINTILK-- 312 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+AA+V+ + LF G AG +R+ LLE + I+ LPT +F++ + + Sbjct: 313 --ATGKAAVVVPDNVLFEGGAG---EVVRKKLLETTDLHTILRLPTGIFYKPGVKANVLF 367 Query: 410 LSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFS 465 R + + +V + + K+ + D + Y +R + Sbjct: 368 FDKRPASAQRQTKEVWIYDLRTNIHFT----LKQHPMTDADLEDFVCCYHPENRYERTET 423 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 D +R+ + + + DI W K L L + Sbjct: 424 YSADNPDGRFRKFSIEEIMER---------DKTSLDIFWIKDKSLADLDNLPSPDELAND 474 Query: 526 IYPYGWAESFVKESIKSNEAKT 547 I + ++++ K Sbjct: 475 IIENLQSALDSFTALQAQLNKG 496 >gi|254787777|ref|YP_003075206.1| typeI restriction-modification system, methylase subunit [Teredinibacter turnerae T7901] gi|237683921|gb|ACR11185.1| putative TypeI restriction-modification system, methylase subunit [Teredinibacter turnerae T7901] Length = 716 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 95/588 (16%), Positives = 200/588 (34%), Gaps = 76/588 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + ++ +WK+A+ L + + ++ ++ LR + + + Sbjct: 5 ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRFLSVKDDIVATLPSRS 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 G +L + Y E L + +N I D+ +A + + + Sbjct: 65 GKTRELTKEDFSKKSAIYLKPEAQFDYLIALTDADNRAEAIIHAMDSIEA--DYTNLRNQ 122 Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + E + + + + IYE+ + +F + + +F TP Sbjct: 123 LPKQEYNNIPNDVLGMLLRTLNPDELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFTPV 182 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +V L +L ++DP CG+GG + + + P L Sbjct: 183 SLVQLIVNVL-----------EPDHGKIFDPACGSGGMFVQSAHFMERHAQD---PHELT 228 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299 +G E T + + + LE + + T +++ G Y ++NP Sbjct: 229 FYGHEKNRVTTRLAKMNLAVHGLEGNVEGGEAAITYY--TFAQEPHEGLFGTADYVMANP 286 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGG 353 PF V+ E + R GLP K+S+ + L++ + + L N Sbjct: 287 PFNVD------EVDAEKIKADKRRLPFGLPGVNKNKKVSNANYLWIQYFYSYL----NDT 336 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRA V+SS AG E+++R L++ ++ +V + + F+ + LW L+ Sbjct: 337 GRAGFVMSSQA---SSAGRDEAKVREQLVKTGHVDIMVDIRGNFFYTRTVPCQLWFLNKN 393 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-----------------Y 456 K + KV +++A +++ R +K + +Q++ + + Y Sbjct: 394 KPAYLKDKVLMLDARNVY---RKVTRKIYDFSPEQQQNLTAVVWLYRGEGARFIALLQEY 450 Query: 457 VSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 V+R + + + L K +A +K + Sbjct: 451 VTRALREAEHCHQWPEDDY-------EPVAEVIAQLTKIKIATQPFMQQLKK-EGVEADT 502 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 + D + + + + E K L+ S I FI Sbjct: 503 FADFAAALTLVEGSWKEFDDVAYDLGTEWEKKPLR---SVKGIKTFIE 547 >gi|298253897|ref|ZP_06977484.1| type I restriction-modification system, methyltransferase subunit [Gardnerella vaginalis 5-1] gi|297532040|gb|EFH71015.1| type I restriction-modification system, methyltransferase subunit [Gardnerella vaginalis 5-1] Length = 535 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 116/557 (20%), Positives = 214/557 (38%), Gaps = 62/557 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAV 55 E A ++ + ++ + L F ++L LR + E +E R + Sbjct: 5 ETAEKALNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIESLRKTL 64 Query: 56 REKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDN 110 E+ L NI F A ++ E ST+ +T L++ ++ + Sbjct: 65 IEQGLDPDDENIRAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSRLEEE 124 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + F + R A + KI + I ++ +YE+ ++ F Sbjct: 125 DPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGEEKDLIGYVYEYFLKEFAVNA 184 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 ++ +F TP DVV L A++ TLYDP CG+GG + V Sbjct: 185 TKEEGEFYTPHDVVKLIAAMI-----------EPFEGTLYDPACGSGGMFIQSAELVKSK 233 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + + +GQE E T+ + + +R + + S+ + DL G Sbjct: 234 QGNLN---SINIYGQEKEAATYRLAKMNLALRGISHNLGGTN------DSSFTHDLHKGL 284 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELP 349 F+Y ++NPPF K D++ R+ G P S+ + +++H+ + L+ Sbjct: 285 YFNYIMANPPFNLKGWYDEN-------LKNDPRWADYGTPPESNANYAWILHILSHLKPS 337 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G A +L++ L + EIR+ L++ND +EAI+ LP +LF T+I+ LWI Sbjct: 338 ---NGVAGFLLANGALNDSDT----LEIRKRLIQNDKVEAIIVLPRELFITTDISVTLWI 390 Query: 410 LSNRKT---------EERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSR 459 L+ K R ++ ++ +++ E KK+ ++ +Q + DIY + Sbjct: 391 LNQNKNGGKYHDRNLRNRDHEILFMDLRTWTEHAVKGENKKKVRLSAEQIQHAADIYHTW 450 Query: 460 E-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFW 515 + G YR + + + L + DI + K Q+ Sbjct: 451 QSEGTDGNNYAVPEL-YRSVGMPEIDSKDWALTPSKYIEFIDHDLDIDYEKEMARIQAEM 509 Query: 516 LDILKPMMQQIYPYGWA 532 DIL+ + A Sbjct: 510 KDILREEKESQKMLEDA 526 >gi|294793237|ref|ZP_06758383.1| putative modification enzyme transmembrane protein [Veillonella sp. 6_1_27] gi|294456182|gb|EFG24546.1| putative modification enzyme transmembrane protein [Veillonella sp. 6_1_27] Length = 616 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 89/482 (18%), Positives = 170/482 (35%), Gaps = 70/482 (14%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L N +W+ A+ L + +L LR + + + G + Sbjct: 6 KLENELWEAADALRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLIEVEILKDRPMRNGRVM 65 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLG--STNTR-------------------NNLESYIAS 106 +E+ A + Y E L + + NN + I Sbjct: 66 PVEASDFKAKSALYLPLEAQYDYLLNLPEDIKGAALTSKDGQVMTSLGEVVNNAMALIEE 125 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S I +++ L L +I + F+ L D V ++ IYE+ + +F Sbjct: 126 QSSQLTGILPK-NYTDFSDEL-----LAEILRIFNNSAL--DEVGGDIIGRIYEYFLNKF 177 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 ++ F TP+ +V + +L TL+DP CG+GG + + Sbjct: 178 AKNIASDDGVFFTPKSLVKMIVNVL-----------EPTHGTLFDPACGSGGMFIQSGDF 226 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V G + + +GQE +C+ M + L + +G++ D Sbjct: 227 VNSHGLNANT--TMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGD-----EGNSFYNDA 279 Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFL 339 + R Y ++NPPF K + GR G+P +I + + L++ Sbjct: 280 HQLEGRCDYIMANPPFNVDKVKSESTQAA-------GRLPFGMPGVNKNKEIGNANYLWI 332 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + + L N GRA V++SS + + IR L++ ++ +V++ + F+ Sbjct: 333 SYFYSYL----NDTGRAGFVMASSA---TDSQGKDKNIRESLVKTGAVDVMVSVGNNFFY 385 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 ++ LW K + KV I+A + +T + + I+ +Y Sbjct: 386 TKSLPCSLWFFDRAKPDAIEDKVLFIDARNYYTVVDRTLNEWTEWQLKNLNAIVWLYRGE 445 Query: 460 EN 461 Sbjct: 446 VE 447 >gi|312872335|ref|ZP_07732405.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LEAF 2062A-h1] gi|311092158|gb|EFQ50532.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LEAF 2062A-h1] Length = 535 Score = 227 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 113/564 (20%), Positives = 213/564 (37%), Gaps = 70/564 (12%) Query: 1 MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPT 51 M + + +L + ++ + L F ++L LR + E +E Sbjct: 1 MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL 60 Query: 52 RSAVREKYLAFGGSNIDLESFVKVA--GYSFYNTSEYSLSTLGST---NTRNNLESYI-- 104 R + E+ L +NI F ++ E ST+ +T L++ + Sbjct: 61 RKTLIEQGLDPDDANIKAAFFDDATFTDGTYSLPVEARWSTIINTPAPKLNVALDTALSK 120 Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 + K F F++ L + KI + I ++ +YE+ + Sbjct: 121 LEAEDPQLKGCFIKGTFTT--RNLAANDI-KKIVDEVNKISHKAFGKEKDLIGYVYEYFL 177 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F ++ +F TP DVV L A++ TLYDP CG+GG + Sbjct: 178 KEFAVNATKEEGEFYTPHDVVKLIAAMI-----------EPFEGTLYDPACGSGGMFIQS 226 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 V + + +GQE E T+ + + +R + + S+ + Sbjct: 227 AELVKSKQGNLN---SINVYGQEKEAATYRLAKMNLALRGISHNLGGTN------DSSFT 277 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHL 342 DL G F Y ++NPPF K D++ R+ G P S+ + +++H+ Sbjct: 278 HDLHKGLYFDYVMANPPFNLKGWYDEN-------LKNDARWADYGTPPESNANYAWILHI 330 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 + L+ G A +L++ L + EIR+ L++ND +EAI+ LP +LF T+ Sbjct: 331 LSHLKPS---NGVAGFLLANGALNDSDT----LEIRKKLIQNDKVEAIIVLPRELFITTD 383 Query: 403 IATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQI 452 I+ LWIL+ K R ++ ++ + K++ ++ DQ ++ Sbjct: 384 ISVTLWILNQNKKGGKYHGRNLRNREHEILFMDLRTWTENAVKGENKKKVRLSADQIQRA 443 Query: 453 LDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLS 508 +IY + + G YR + ++ + L + DI + K Sbjct: 444 ANIYHTWQSEGTDGNNYAVPEL-YRSVGMVEIESKGWALTPSKYIEFIDHDLDIDYEKEM 502 Query: 509 PLHQSFWLDILKPMMQQIYPYGWA 532 Q+ D+L+ + A Sbjct: 503 ARIQAEMKDLLREEKESQKMLEDA 526 >gi|329575569|gb|EGG57106.1| putative type I restriction-modification system, M subunit [Enterococcus faecalis TX1467] Length = 357 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 82/312 (26%), Positives = 141/312 (45%), Gaps = 39/312 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ + YE LI +F SE + A +F TP V + + + + +++DPT Sbjct: 1 MIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARSVALGQED------KKLFSVFDPT 54 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G + + N++ P + HGQEL T +++ +E++ Sbjct: 55 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNHAKMNLILHGVEAEDM---- 103 Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 N++ G TL+KD T + + + + NPP+ KW D ++ R+G L Sbjct: 104 -NLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPK 157 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G AIVL LF G A E IR+ LLE+ I A++ Sbjct: 158 SKADFAFLLHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 210 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 +P +LFF T+I T + IL + V I+A+ +T GK + + + + Sbjct: 211 GMPANLFFGTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDK 263 Query: 452 ILDIYVSRENGK 463 I+ Y+ R++ + Sbjct: 264 IVSTYIERQDVE 275 >gi|154500306|ref|ZP_02038344.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC 29799] gi|150271038|gb|EDM98312.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC 29799] Length = 622 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 96/577 (16%), Positives = 195/577 (33%), Gaps = 88/577 (15%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +W++A+ L + +L LR + + + + GG + Sbjct: 6 KLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLVEAEILKDRPMRGGRVL 65 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLG--STNT-------------------RNNLESYIAS 106 +E+ + + + E + L N NN + Sbjct: 66 PVEASDFASRSALFLPREAQYAYLVELPENIPAAGLTNWRGEVMNSLGEVVNNAMELVEQ 125 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S+ + + LL ++ + F+ L D V ++ IYE+ + +F Sbjct: 126 QSEQLSGVLPKDY------TMFSDELLAELLRIFNNSAL--DEVGGDIVGRIYEYFLNKF 177 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 +++ F TP+ +V + +L L DP CG+GG + Sbjct: 178 AKNIAQDDGVFFTPKSLVKMIVNVL-----------EPTQGILLDPACGSGGMFVQTGDF 226 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V + + +GQE +C+ + + L + N T D Sbjct: 227 VE--HAGMLANNTMTFYGQEKVEYNAKLCLMNLAVHGLNGIVKSGDEAN-----TFYHDA 279 Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS------DGSMLFL 339 + Y ++NPPF K + A GR GLP ++ +G+ L++ Sbjct: 280 HNLEGCCDYVMANPPFNVDKVKSESAQSA-------GRLPFGLPSVNKNKEIGNGNYLWI 332 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + L GRA V++SS + + +IR L++ + +V++ + F+ Sbjct: 333 SYFYAYLNEQ----GRAGFVMASSA---TDSQGKDKDIREQLVKTGHVAVMVSVGNNFFY 385 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 ++ LW K EE R KV I+A + +T + + I+ +Y Sbjct: 386 TKSLPCSLWFFDKGKREELRDKVLFIDARNYYTVVDRTLNEWSDWQLKNLNAIVWLYRGE 445 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRM------------------SFILDKTGLARLEAD 501 + + + +Y + ++ + + + LA+ + + Sbjct: 446 VDKYQALVKEYDRALVHHVTLMHANELLPAVHERRNFSEVVTVFEEYRKQQQELAKFDLE 505 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 RK Q+ W + L + + I A ++ Sbjct: 506 KVVRKDKKKTQALWDEKLAVIDEAISTAKEAVWLTEK 542 >gi|291546500|emb|CBL19608.1| Type I restriction-modification system methyltransferase subunit [Ruminococcus sp. SR1/5] Length = 552 Score = 226 bits (577), Expect = 9e-57, Method: Composition-based stats. Identities = 119/574 (20%), Positives = 222/574 (38%), Gaps = 64/574 (11%) Query: 1 MTEFTGSAA--SLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPT 51 M + + ++ N ++ + L F ++L LR + E +E Sbjct: 1 MAKKKTTEKALNIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIENL 60 Query: 52 RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYIAS 106 + ++E+ L NI F A ++ E ST+ ST L++ + Sbjct: 61 KQTLKEQGLDPEDENIRAAFFDDATFADGTYNLPPEARWSTIISTPAPQLNVALDTALQR 120 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + F + AR A + KI + I ++ +YE+ ++ F Sbjct: 121 LEEEDPQLKGCFVKGTFTARNLAANDIKKIVDEVNKISHKTFGEEKDLIGRVYEYFLKEF 180 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 ++ +F TP DVV L ++ D TLYDP CG+GG + Sbjct: 181 AVNATKEEGEFYTPHDVVQLIATMIEPYDG-----------TLYDPCCGSGGMFIQSAEL 229 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V + + +GQE EP T+ + + +R + + + S+ + DL Sbjct: 230 VKSKQGNLN---GINVYGQEKEPATYRLAKMNLALRGISHNLGEEA------DSSFTHDL 280 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANK 345 G F+Y ++NPPF K + + GR+ P S+ + +++H+ + Sbjct: 281 HKGLHFNYIMANPPFNLKGWYNDN-------LKNDGRWSDYQTPPESNANYAWILHILSH 333 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G A +L++ L + EIR+ L++ND IEAIV LP +LF T+I+ Sbjct: 334 LKKTD---GVAGFLLANGALNDSDT----LEIRKELIQNDKIEAIVVLPRELFITTDISV 386 Query: 406 YLWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDI 455 LWIL+ K R ++ ++ + ++ E KK+ ++ +Q + DI Sbjct: 387 TLWILNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESKKKVRLDTEQIEKAADI 446 Query: 456 YVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLH 511 Y + + G + YR + + + L + DI + K Sbjct: 447 YHTWQCEGTDGAAYEMPEL-YRSVCINEIESKGWALTPSKYIEFIDHDLDIDYEKEMVRI 505 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 QS +++K + ++ES + Sbjct: 506 QSEMQEVMKQEKKSQQMRLTRIQMLQESFYQLKE 539 >gi|261415743|ref|YP_003249426.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372199|gb|ACX74944.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325604|gb|ADL24805.1| type I restriction-modification system, M subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 624 Score = 226 bits (577), Expect = 9e-57, Method: Composition-based stats. Identities = 101/607 (16%), Positives = 198/607 (32%), Gaps = 77/607 (12%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 S L +W++A+ L + +L LR + + + + + Sbjct: 2 DNKSLKKLEADLWESADLLRADSKLTSNQYCMPVLGLLFLRYAYGRFKKVEAELLKNRPS 61 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NL 100 GG + +E+ V+ + + E L N + N Sbjct: 62 RGGRVLPIEASDFVSKSALFLPKEAQFDYLVNLPANIASAKLKNVHGQPLNSLGEVVNNA 121 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + S+ K + K LL ++ + F+ L D V VM IYE Sbjct: 122 MELVEAQSEKLKGVLPK------TYTDFKDNLLAELLRTFNNNAL--DDVGGDVMGRIYE 173 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + + +F ++ F TP+ +V + +L L DP CG+GG Sbjct: 174 YFLSKFAKNIASDDGVFFTPKSLVKMIVNVL-----------EPSYGVLLDPACGSGGMF 222 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + V + + +GQE +C+ M + L + N Sbjct: 223 VQTGDFV--NAAGMASNETMTFYGQEKVEYNAQLCLMNMAVHGLTGVVKSGDEAN----- 275 Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS------D 333 + D + Y ++NPPF K + GR GLP ++ + Sbjct: 276 SFYHDAHNLTGQCDYVMANPPFNVDKVKAESCQSA-------GRLPFGLPAVNKDKEIGN 328 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 G+ L++ + + L GRA V+++S + S + +IR L+ ++ ++++ Sbjct: 329 GNYLWISYFYSYLNEK----GRAGFVMAASA---TDSQSKDKDIREKLVATGHVDCMISV 381 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 + F+ ++ LW K + + KV I+A + +T + + I+ Sbjct: 382 GNNFFYTKSLPCTLWFFDKCKKKNIKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIV 441 Query: 454 DIYVSRENGKFSRMLDYRTFG--YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +Y + S + +YRT Y L ++E +R+ Sbjct: 442 WLYRGELDKYQSLLAEYRTTLLSYADETDDANLEKILRKTSKIAKQVELLKEYRETLRAE 501 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV---KASKSFIVAFIN--AFGR 566 +D ++ W + N AK K + Sbjct: 502 AKASVDAADKKSKKKTQEEWDTRLAEFDEILNVAKEADWLYEKFGDGKYKDILGLCKIAT 561 Query: 567 KDPRADP 573 + A+ Sbjct: 562 RAEIAEK 568 >gi|167750092|ref|ZP_02422219.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702] gi|167656965|gb|EDS01095.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702] Length = 621 Score = 226 bits (577), Expect = 9e-57, Method: Composition-based stats. Identities = 92/571 (16%), Positives = 191/571 (33%), Gaps = 77/571 (13%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L +W++A+ L + +L LR + + + + + GG + Sbjct: 6 KLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKKVEAEILKDRPSRGGRVM 65 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NLESYIAS 106 +E+ A + + E L N N I Sbjct: 66 PVEASDFSAKSALFLPKEAQYEYLVNLPENIAAAGLINKAGHPMNSLGEVVNNAMQLIED 125 Query: 107 FSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 S+ + DF+ LL ++ + F+ L D V ++ IYE+ + Sbjct: 126 QSEQLTGVLPKSYTDFTDE--------LLAELLRIFNNSAL--DDVGGDIIGRIYEYFLN 175 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 +F ++ F TP+ +V + ++ L D CG+GG + Sbjct: 176 KFAKNIASDDGVFFTPKSLVKMIVNII-----------EPKQGVLLDCACGSGGMFVQSG 224 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + V + + +GQE +C+ M + L + N T Sbjct: 225 DFV--NAAGMNANSTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEAN-----TFYH 277 Query: 285 DLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS------DGSML 337 D Y ++NPPF K + GR GLP ++ + + L Sbjct: 278 DAHNLNGCCDYIMANPPFNVDKVKAESCESA-------GRLPFGLPSVNKNKEVGNANYL 330 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ + + L GRA V++SS + + +IR L+ ++ ++++ + Sbjct: 331 WISYFYSYLNEH----GRAGFVMASSA---TDSQGKDKDIREKLIGTGHVDVMISVGNNF 383 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ ++ LW K E R KV I+A + +T + + I+ +Y Sbjct: 384 FYTKSLPCSLWFFDKAKGEAIRDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYR 443 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--SFW 515 + + + +Y + + + + + + + + + KLS L + Sbjct: 444 GETDKYTALLQEYHHYLHDEAEAAENDDLKEAVYQESFVDIVSALK-EKLSALRKTAKAE 502 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 ++ ++ + + N AK Sbjct: 503 VEAAGKRDKKSVQQQYDDRIAYIENMLNVAK 533 >gi|269797185|ref|YP_003311085.1| N-6 DNA methylase [Veillonella parvula DSM 2008] gi|269093814|gb|ACZ23805.1| N-6 DNA methylase [Veillonella parvula DSM 2008] Length = 616 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 169/478 (35%), Gaps = 70/478 (14%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L N +W+ A+ L + +L LR + + + G + Sbjct: 6 KLENELWEAADALRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLIEVEILKDRPMRNGRVM 65 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLG--STNTR-------------------NNLESYIAS 106 +E+ A + Y E L + + NN + I Sbjct: 66 PVEASDFKAKSALYLPIEAQYDYLLNLPEDIKGAALTSKDGQVMTSLGEVVNNAMALIEE 125 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S I +++ L L +I + F+ L D V ++ IYE+ + +F Sbjct: 126 QSAQLTGILPK-NYTDFSDEL-----LAEILRIFNNSAL--DEVGGDIIGRIYEYFLNKF 177 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 ++ F TP+ +V + +L TL+DP CG+GG + + Sbjct: 178 AKNIASDDGVFFTPKSLVKMIVNVL-----------EPTHGTLFDPACGSGGMFIQSGDF 226 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 V G + + +GQE +C+ M + L + +G++ D Sbjct: 227 VNSHGLNANS--TMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGD-----EGNSFYNDA 279 Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFL 339 + R Y ++NPPF K + GR G+P +I + + L++ Sbjct: 280 HQLEGRCDYIMANPPFNVDKVKSESTQAA-------GRLPFGMPGVNKNKEIGNANYLWI 332 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + + L GRA V++SS + + IR L++ ++ +V++ + F+ Sbjct: 333 SYFYSYLNDI----GRAGFVMASSA---TDSQGKDKNIRESLVKTGAVDVMVSVGNNFFY 385 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 ++ LW K + KV I+A + +T + + I+ +Y Sbjct: 386 TKSLPCSLWFFDRAKPDAIEDKVLFIDARNYYTVVDRTLNEWTEWQLKNLNAIVWLYR 443 >gi|120436929|ref|YP_862615.1| type I restriction-modification system methyltransferase subunit [Gramella forsetii KT0803] gi|117579079|emb|CAL67548.1| type I restriction-modification system methyltransferase subunit [Gramella forsetii KT0803] Length = 526 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 85/479 (17%), Positives = 164/479 (34%), Gaps = 56/479 (11%) Query: 6 GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---- 59 L +W A+DL ++ +L LLR + E + + K Sbjct: 4 EQLKDLEKQLWDAADDLRANSKLTAAEYKDPLLGLVLLRFAQNRYEEAKIYIENKLPVNP 63 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAI 114 E F+ ++Y ++ N + + + I Sbjct: 64 RTGKKRESTKEDFLGAGAIKLPEKAQYDYLANLPSDISMPEKVNEAMKLVETEYPDLAGI 123 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--E 172 +++A LL + + F+ + V IYE + +F + + + Sbjct: 124 LPK-----NYQEMDEA-LLRSLVRTFNSDAV--KKASGDVFGRIYEFFLMKFSMQGAGAQ 175 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TP +V+L + ++DP CG+GG + + + D Sbjct: 176 EGGEFFTPPSLVNLIVNFIQPDHG-----------IIHDPACGSGGMFVQSAHFIQDH-E 223 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291 + + + +G E + + + I +E I ++ D + Sbjct: 224 NRNVNEAITVYGTEYKSNNTKLAKMNLAIHGIEG--------KIINENSYYSDPHHLVGK 275 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + ++NPPF K+ E K G G IS+G+ L++ + + L Sbjct: 276 CDFVMANPPFNMDKIDAKNKFLAEDKRLPFGPPLTGKGTISNGNYLWIQYFHSYLNKNGK 335 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G A AG E IR L+E ++ IVA+ + F+ ++ +LW Sbjct: 336 AGFVMA-------SSATDAGHAEKRIREQLVETGDVDCIVAVGNNFFYTRSLPCHLWFFD 388 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYVSRENGKFSRM 467 K +E R K+ +I+A +++ R + DQ I+ +Y E + S Sbjct: 389 KGKKKENRDKILMIDARNVY---RKVSSTVNDFSPDQMEGLTAIIQMYRG-EQPEVSED 443 >gi|226329604|ref|ZP_03805122.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198] gi|225202790|gb|EEG85144.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198] Length = 396 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 78/412 (18%), Positives = 149/412 (36%), Gaps = 56/412 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64 + LA IW++A + + ++ IL F + L L T+ + + + Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTAEDIKNLN 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFED 117 + ++ + ST +N R+ L ++ S K +FE Sbjct: 62 EEDTDTVQYVQSNLGYFIAYDNLFSTWVDPKFEFDESNVRDALSAFSRLISPTYKKLFEG 121 Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + +++L ++ + + I V+ IYE+LI +F + Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNANQGYDVLGYIYEYLIEKFAANA 180 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TP +V L + ++ +YDPT G+G L + V Sbjct: 181 GKKAGEFYTPHEVSVLMSNIVAHALKDKDNIE------IYDPTSGSGSLLINIGEAVQ-- 232 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + K + + QEL+ T+ + +++R +++ + + G TL D Sbjct: 233 -KYAKNKDSVTYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +SNPP+ + WE + + RF GL + FL Sbjct: 287 ENDPQGSYETLYVDAVVSNPPYSQNWEPTDKSNDPR-----YSRF--GLAPKTKADFAFL 339 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 +H L+ G IV LF G E +IR+ + + + AI+ Sbjct: 340 LHDLYHLKP----NGIMTIVSPHGVLFRGGE---EGKIRKLMTKLSQLSAII 384 >gi|304373126|ref|YP_003856335.1| Type I restriction-modification system methyltransferase subunit [Mycoplasma hyorhinis HUB-1] gi|304309317|gb|ADM21797.1| Type I restriction-modification system methyltransferase subunit [Mycoplasma hyorhinis HUB-1] Length = 931 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 92/519 (17%), Positives = 169/519 (32%), Gaps = 91/519 (17%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51 T + LAN IW A+ L G +++ +L + + E T Sbjct: 11 TNKALTKQELANKIWTAADKLRGSIDASEYKNFLLELIFYKTISEKFEKTFIENFKDIQM 70 Query: 52 ----------------RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 + + + ++ Y S+ N Sbjct: 71 LKCFTKVRNNFNNNTKDDNIVTLCSQYTEKELKDYKEELNGLVGYFIEEPYLFSSWIKNN 130 Query: 96 TRN----NLESYIASFSDNAKAIFEDFD---------FSSTIA------------RLEKA 130 + L I +F+ N K E + F LE+ Sbjct: 131 LEDFNVLTLSDSIKAFNQNQKEFEEKINPDKCSATPLFEGIFNSLSNDLNKLGNTTLEQT 190 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS-EVSEGAEDFMTPRDVVHLATA 189 L + I + + V+ +YE LI +F S + +F TP +V L + Sbjct: 191 KKLTSLIDIIKDIPVKQNNFD--VLGYVYEFLIAKFASSNTGKKGGEFYTPHEVSLLMSE 248 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 ++ + E +YD T G+G L + ++ + QEL Sbjct: 249 IVANHLKNKNYE-----IKVYDSTSGSGSLLRSIGDMYKKITNNDDNSVK--YYAQELNS 301 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKK 304 T + ++I + + + TL D + +SNPP+ Sbjct: 302 STCKLTKMNLIINGIATKSICVQNA-----DTLKDDWPMKNDEETLKVDAVVSNPPYSMS 356 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 W ++ + + G+ S FL+H GG AIVL Sbjct: 357 WNAEEHKNDIRFEE-------YGIAPRSKADFAFLLHDLYH----VEDGGILAIVLPHGV 405 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK--TEERRGKV 422 LF E +IR L+ I+AI+ LP +F+ T I+T + IL K + + + Sbjct: 406 LFR---EGSEKQIREKLVRKANIKAIIGLPDKMFYGTEISTIIMILKKDKYYEKTKENNI 462 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 ++A++L+ + K + ++I+D +++ Sbjct: 463 LFVDASNLY----KQEGKMKKFLASHIKKIVDTVINKRE 497 >gi|34764861|ref|ZP_00145228.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885799|gb|EAA23174.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 353 Score = 225 bits (573), Expect = 3e-56, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 156/381 (40%), Gaps = 52/381 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + S + ++ TP++V L T + L + K +YDP Sbjct: 12 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDP 63 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + K GQE+ T+ +C M + ++ D Sbjct: 64 ACGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 114 Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 +I G TL++ + F +SNPP+ KWE D + RF P L Sbjct: 115 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLA 167 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 S + F+MH + L G AAIV ++ A E +IR++L++N+ I+ Sbjct: 168 PKSKADLAFIMHSLSWLAS----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDG 220 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I+ LP +LF+ T+IAT + +L K KV I+A+ + + N + + Sbjct: 221 IIQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKHI 273 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADIT 503 I++ + REN ++ L Y +I V +S + +E + Sbjct: 274 DDIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNKE 328 Query: 504 WRKLSPLHQSFWLDILKPMMQ 524 +++ + +I K + + Sbjct: 329 IQRIVAREEELRKEIDKIIAE 349 >gi|306843200|ref|ZP_07475813.1| type I restriction-modification system, M subunit [Brucella sp. BO2] gi|306286610|gb|EFM58183.1| type I restriction-modification system, M subunit [Brucella sp. BO2] Length = 741 Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 52/366 (14%) Query: 119 DFSSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173 DF++ RL K L K+ F ++ + D ++ + YE+L+R F +E + Sbjct: 23 DFNNE-DRLGKGKAMVDTLTKLVGIFENLDFGKNRADGDDLLGDAYEYLMRHFATESGKS 81 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP +V + ++ D T+YDPTCG+G L + Sbjct: 82 KGQFYTPAEVSRILAKVIGINKD------TKRDATVYDPTCGSGSLL---------LKVN 126 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + P L +GQE E T A+ M++ +SD + Q TLS + K Sbjct: 127 DEAPNGLSLYGQEKEQATVALARMNMILHGSDSDE-------LWQDDTLSAPHWRDKNGK 179 Query: 291 --RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F + ++NPPF K W + E + RF G P +G FL+H+ L+ Sbjct: 180 LRTFDFAVANPPFSLKSWSNGFTPSDDEFE-----RFEYGQPPEKNGDYAFLLHIIKSLK 234 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR A++L LF G A E++IRR L+ I+ I+ LP +LF+ T I + Sbjct: 235 ST----GRGAVILPHGVLFRGNA---EADIRRNLVRQGYIKGIIGLPANLFYGTGIPACI 287 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 ++ T + +I+A+ + +G K R + +I+D++ + +SR Sbjct: 288 IVIDKS-TAGPERPIFMIDASKGFV---KDGNKNR-LRAQDIHKIVDVFNRQLVVDRYSR 342 Query: 467 MLDYRT 472 ++ Y Sbjct: 343 LVPYDE 348 >gi|260767610|ref|ZP_05876546.1| N-6 DNA methylase [Vibrio furnissii CIP 102972] gi|260617510|gb|EEX42693.1| N-6 DNA methylase [Vibrio furnissii CIP 102972] Length = 713 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 82/474 (17%), Positives = 173/474 (36%), Gaps = 64/474 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKY---- 59 + ++ +WK+A++L + + ++ ++ LR + + + Sbjct: 5 ENIEAIEKRLWKSADNLRANSELASNEYFLPVMGLIFLRHAYSRYLAVKEEIIAELPSRG 64 Query: 60 ----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 + F + + + +ES I N K Sbjct: 65 GKTRELTKEDFSQKSAIFLALEAQFDYLIALTDADKRAEAIIQAMES-IEKDYKNLKDQL 123 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 ++++ +L + + + EL + IYE+ + F + + Sbjct: 124 PKQEYNNI-----PNDVLGVLLRTLNPEEL--KQASGDIFGRIYEYFLTEFADQGAHDGG 176 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TP +V L +L ++DP CG+GG + + + + + Sbjct: 177 EFFTPVSLVQLLVNVL-----------EPDHGKIFDPACGSGGMFVQSAHFMER---NAQ 222 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFH 293 P L +G E T + + + LE + S T D G Sbjct: 223 NPQELTFYGHEKNRVTTRLAKMNLAVHGLEGNVEGGESA-----ITYYNDPHEGLFGTVD 277 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLE 347 Y ++NPPF V+ + + R GLP K+S+ + L++ + + L Sbjct: 278 YVMANPPFNVD------EVDADKVKKDQARLPFGLPGVNKNKKVSNANYLWIQYFYSYL- 330 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 N GRA V+SS AG E+++R L++ ++ +V + + F+ ++ L Sbjct: 331 ---NDTGRAGFVMSSQA---SSAGRDEAKVREQLVKTGDVDIMVDVRGNFFYTRSVPCQL 384 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVS 458 W L K + KV +++A +++ R +K + +Q++ I+ +Y + Sbjct: 385 WFLDKNKPANLKNKVLMLDARNVY---RKVTRKIYDFSPEQQKNLTAIVWLYRN 435 >gi|309804936|ref|ZP_07698995.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LactinV 09V1-c] gi|308165749|gb|EFO67973.1| putative type I restriction-modification system, M subunit [Lactobacillus iners LactinV 09V1-c] Length = 535 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 111/564 (19%), Positives = 211/564 (37%), Gaps = 70/564 (12%) Query: 1 MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPT 51 M + + +L + ++ + L F ++L LR + E +E Sbjct: 1 MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL 60 Query: 52 RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI-- 104 R + E+ L +NI F A ++ E ST+ +T L++ + Sbjct: 61 RKTLIEQGLNPDDANIKAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSK 120 Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 + K F F++ L + KI + I ++ +YE+ + Sbjct: 121 LEAEDPQLKGCFIKGTFTT--RNLAANDI-KKIVDEVNKISHKAFGKEKDLIGYVYEYFL 177 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F ++ +F TP DVV L A++ LYDP CG+GG + Sbjct: 178 KEFAVNATKEEGEFYTPHDVVKLIAAMI-----------EPFEGRLYDPACGSGGMFIQS 226 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 V + + +GQE E T+ + + +R + + S+ + Sbjct: 227 AELVKSKQGNLN---SINVYGQEKEAATYRLAKMNLALRGISHNLGDTN------DSSFT 277 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHL 342 DL G F Y ++NPPF K D++ R+ G P S+ + +++H+ Sbjct: 278 HDLHKGLYFDYVMANPPFNLKGWYDEN-------LKNDARWADYGTPPESNANYAWILHI 330 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 + L+ G A +L++ L + EIR+ L++ND +EAI+ LP +LF T+ Sbjct: 331 LSHLKPS---NGVAGFLLANGALNDSDT----LEIRKKLIQNDKVEAIIVLPRELFITTD 383 Query: 403 IATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQI 452 I+ LWIL+ K R ++ ++ + K++ ++ +Q ++ Sbjct: 384 ISVTLWILNQNKKGGKYHDRNLRNREHEILFMDLRTWTENAVKGENKKKVRLSAEQIQRA 443 Query: 453 LDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLS 508 +IY + + G YR + + + L + +I + K Sbjct: 444 ANIYHTWQSEGTDGNNYAVPEL-YRSVGMAEIESKDWSLTPSKYIEFIDHDLEIDYEKEM 502 Query: 509 PLHQSFWLDILKPMMQQIYPYGWA 532 Q+ D+L + A Sbjct: 503 ARIQAEMKDLLHEEKESQKMLEDA 526 >gi|325913562|ref|ZP_08175927.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B] gi|325477141|gb|EGC80288.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B] Length = 606 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 88/522 (16%), Positives = 181/522 (34%), Gaps = 77/522 (14%) Query: 10 SLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 L + +W++A+ L + +L LR + + + + + GG + Sbjct: 6 KLESELWESADLLRSGSKLTSNQYCMPVLGLIFLRYAYSRYKMVEAEILKGRPSRGGRVM 65 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NLESYIAS 106 +E+ A + Y E L + + N I Sbjct: 66 PVEASDFAAKSALYLPKEAQYDYLLKLPEDISSASLVNKDGHSMNSLGEVVNNAMQLIED 125 Query: 107 FSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 S+ + DFS I L ++ + F+ L D + ++ IYE+ + Sbjct: 126 QSEQLIGVLPKSYTDFSDEI--------LSELLRIFNNSAL--DEIDGDIIGRIYEYFLN 175 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 +F ++ F TP+ +V + ++ L DP CG+GG + Sbjct: 176 KFAKNIASDDGVFFTPKSLVKMIVNII-----------EPKSGVLLDPACGSGGMFIQSG 224 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + V + + +GQE +C+ M + L + N + Sbjct: 225 DFV--NAAGMNANRTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEAN-----SFYH 277 Query: 285 DLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSML 337 D Y ++NPPF K + + R G+P ++ + + L Sbjct: 278 DAHNLDGCCDYVMANPPFNVDKVKAEACESAK-------RLPFGMPGINKNKEVGNANYL 330 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ + + L GRA V++SS + + IR L++ ++ ++++ + Sbjct: 331 WISYFYSYLNKK----GRAGFVMASSA---TDSQGKDKTIREKLVKTGHVDVMISVGKNF 383 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F++ + LW RK E + KV I+A + +T + + I+ +Y Sbjct: 384 FYKKTLPCSLWFFDKRKAEPIKDKVLFIDARNYYTVVDRALNEWTDWQLKNMNAIVWLYR 443 Query: 458 SRENGKFSRMLD--YRTFGYRRIKVLRPLRMSFILDKTGLAR 497 E K+S +L+ G + + +S + + Sbjct: 444 G-EIDKYSNLLNEYRSALGSDKSFAEQVQELSGKVKALRSEK 484 >gi|290967797|ref|ZP_06559350.1| putative type I restriction-modification system, M subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782156|gb|EFD94731.1| putative type I restriction-modification system, M subunit [Megasphaera genomosp. type_1 str. 28L] Length = 535 Score = 223 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 112/556 (20%), Positives = 208/556 (37%), Gaps = 74/556 (13%) Query: 10 SLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAVREKYLAF 62 ++ N ++ + L F ++L LR + E +E R + E+ L Sbjct: 12 NIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEALRKTLIEQDLNP 71 Query: 63 GGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI---ASFSDNAKAI 114 NI F A ++ E ST+ +T L++ + K Sbjct: 72 DDENIRAAFFEDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALTRLEEEDPQLKGC 131 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F F++ L + K+ + I ++ +YE+ ++ F ++ Sbjct: 132 FIKGTFTT--RNLAANDI-KKLVDEVNKISHKAFGEEKDLIGYVYEYFLKEFAVNATKEE 188 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP DVV L A++ TLYDP CG+GG + V + Sbjct: 189 GEFYTPHDVVKLMAAMI-----------EPFEGTLYDPACGSGGMFIQSAELVKATQGNL 237 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + +GQE E T+ + + +R + + S+ + DL G F+Y Sbjct: 238 N---SINIYGQEKEAATYRLAKMNLALRGISHNLGGTN------DSSFTHDLHKGLYFNY 288 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF K D++ R+ G P S+ + +++H+ + L+ Sbjct: 289 IMANPPFNLKGWYDEN-------LKNDARWADYGTPPESNANYAWILHILSHLKPS---N 338 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G A +L++ L + EIR+ L++ND +EAI+ LP +LF T+I+ LWIL+ Sbjct: 339 GVAGFLLANGALNDSDT----LEIRKKLIQNDKVEAIIVLPRELFITTDISVTLWILNQN 394 Query: 414 KT---------EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRENGK 463 K R ++ ++ + K++ ++ +Q + IY + + Sbjct: 395 KKGGKYHDRNLRNREHEILFMDLRTRTENAVKGENKKKVRLSAEQIQHAAAIYHTWQ--- 451 Query: 464 FSRMLDYRTFG----YRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWL 516 S D + YR + + + L + DI + K Q+ Sbjct: 452 -SEATDGNNYAAPELYRSVGMAEMESKDWALTPSKYIEFIDHDLDIDYEKEMARIQAEMK 510 Query: 517 DILKPMMQQIYPYGWA 532 D+L + A Sbjct: 511 DLLHEEKESQKMLEDA 526 >gi|189347939|ref|YP_001944468.1| N-6 DNA methylase [Chlorobium limicola DSM 245] gi|189342086|gb|ACD91489.1| N-6 DNA methylase [Chlorobium limicola DSM 245] Length = 772 Score = 223 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 98/474 (20%), Positives = 166/474 (35%), Gaps = 94/474 (19%) Query: 2 TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EK 58 + T +AA L +W A+ L K ++ +L L + R+ + K Sbjct: 8 EKDTATAA-LEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAK 66 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 GS +D + G Y + E L + N+ + + + I + Sbjct: 67 SSTRRGSRVDDPAAYHAEG-VLYLSPEARFGYLLNRPEAENIGVMVN---EAMRDIEKHN 122 Query: 119 D-FSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + + L + LL ++ K S I P ++ IYE+ + F +G Sbjct: 123 QQLAGVLPKTYYLFDSPLLKQLLKKVSEI---PASMDYDAFGRIYEYFLGEFAMSEGQGG 179 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L T ++ + DP CG+GG + VA + Sbjct: 180 GEFYTPVSIVRLLTEVI-----------EPYHGRILDPACGSGGMFVSSARFVAQQKAKT 228 Query: 235 K----------------------------------------------IPPILVPHGQELE 248 + L HG E Sbjct: 229 RLTPPSSPALLPEVEGGEEYAPSSTRSLPKVEGGLSVGHDVTQYSGDPNRELSIHGIEKT 288 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEK 307 ET +C + + LE + N + D F + L+NPPF Sbjct: 289 DETGRLCRLNLAVHGLEGRIMHGGNVN-----SYYDDPHEATGNFDFVLANPPFNV---- 339 Query: 308 DKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 +AV+KE +G RF GLP+ + + L++ + L N GRA V+++S Sbjct: 340 --NAVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSAL----NERGRAGFVMANSA 393 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 A S E EIRR L+E ++ +VA+ ++F+ + LW K + R Sbjct: 394 ---SDARSSEQEIRRQLVEIRAVDVMVAVGPNMFYTVTLPCTLWFFDKAKAKAR 444 >gi|90410147|ref|ZP_01218164.1| DNA methylase M, host modification [Photobacterium profundum 3TCK] gi|90329500|gb|EAS45757.1| DNA methylase M, host modification [Photobacterium profundum 3TCK] Length = 549 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 105/591 (17%), Positives = 195/591 (32%), Gaps = 93/591 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ E T Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----EETGQE-----SELL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + + G + L LG + +AIF++ + Sbjct: 51 PEGLRWKDLKTKIGREQHQFYRNMLVQLGDDSHAI------------VRAIFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N + ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPAQLTELVSNMDSLGWFEGDKGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SH 233 ++ L+ P + DP GT GFL +A ++ Sbjct: 154 SLISTIVKLM----------QPQPREVIQDPAAGTAGFLIEADRYIKSHTNDLDDLSEDD 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL PET + + L+ +E D + + I+ G+TL D + + Sbjct: 204 QDFQMQRAFVGLELVPETRRLALMNCLLHDIEGDQDKGGA--IRLGNTLGSDGEALPKSN 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFG + + S+ + F+ H+ LE G Sbjct: 262 VILTNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIVESLEP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + ++ LPT +F+ + T + Sbjct: 304 GRAAVVIPDNVLFEGGKG---ADIRRDLMDKCRLHTVLRLPTGIFYAAGVKTNVLFFQKG 360 Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + E+ + D+ T++ G KRR + D + Y +NG+ R Sbjct: 361 TVKNPEQDKKCTTETWVFDMRTNMNTFG-KRRPLTDKHFDAFIAAYGEDKNGQSPRSEGV 419 Query: 471 RTFG---YRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 Y V + + + +++ + D + WL L+ Sbjct: 420 WDVMGAIYAEGETSVEQTSQKAHKVEEARFRKFSRDYIRDQKGDSLDISWLKDLEA---- 475 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP-RADPVT 575 + + E ++ + S I + A G D A Sbjct: 476 -----TSTENLPEPEVLAGEAMAELTEAMSEIYQLMQALGANDEAEAQKQL 521 >gi|153811191|ref|ZP_01963859.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174] gi|149832689|gb|EDM87773.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174] Length = 535 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 108/481 (22%), Positives = 197/481 (40%), Gaps = 57/481 (11%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAV 55 + T A ++ N ++ + L F ++L LR + E +E + + Sbjct: 5 KTTEKALNIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIENLKQTL 64 Query: 56 REKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDN 110 +E+ L NI F A ++ E ST+ ST L++ + + Sbjct: 65 KEQGLDPEDENIRAAFFDDATFADGTYNLPPEARWSTIISTPAPQLNVALDTALQRLEEE 124 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + F + AR A + KI + I ++ +YE+ ++ F Sbjct: 125 DPQLKGCFVKGTFTARNLAANDIKKIVDEVNKISHKTFGEEKDLIGRVYEYFLKEFAVNA 184 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 ++ +F TP DVV L ++ D TLYDP CG+GG + V Sbjct: 185 TKEEGEFYTPHDVVQLIATMIEPYDG-----------TLYDPCCGSGGMFIQSAELVKSK 233 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + + +GQE EP T+ + + +R + + + S+ + DL G Sbjct: 234 QGNLN---GINVYGQEKEPATYRLAKMNLALRGISHNLGEEA------DSSFTHDLHKGL 284 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELP 349 F+Y ++NPPF K + + GR+ P S+ + +++H+ + L+ Sbjct: 285 HFNYIMANPPFNLKGWYNDN-------LKNDGRWSDYQTPPESNANYAWILHILSHLKKT 337 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G A +L++ L + EIR+ L++ND IEAIV LP +LF T+I+ LWI Sbjct: 338 D---GVAGFLLANGALNDSDT----LEIRKELIQNDKIEAIVVLPRELFITTDISVTLWI 390 Query: 410 LSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDIYVSR 459 L+ K R ++ ++ + ++ E KK+ ++ +Q + DIY + Sbjct: 391 LNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESKKKVRLDTEQIEKAADIYHTW 450 Query: 460 E 460 + Sbjct: 451 Q 451 >gi|324115279|gb|EGC09243.1| N-6 DNA methylase [Escherichia fergusonii B253] Length = 529 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 96/485 (19%), Positives = 176/485 (36%), Gaps = 91/485 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T +YL G Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPVG 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 DL+S + FY L LG+ N + +A+F++ + Sbjct: 54 YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N ++ + ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPKQLTELVSNMDSLDWYNGAYGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460 + + V + + T++ + G KR D+ + +Y R Sbjct: 361 TVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRT 416 Query: 461 NGKFS 465 G++S Sbjct: 417 EGEWS 421 >gi|253775030|ref|YP_003037861.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|301022251|ref|ZP_07186149.1| N-6 DNA Methylase [Escherichia coli MS 196-1] gi|146398|gb|AAA23985.1| restriction-modification enzyme type I M subunit [Escherichia coli] gi|242379864|emb|CAQ34698.1| host modification; DNA methylase M, subunit of EcoKI restriction-modification system [Escherichia coli BL21(DE3)] gi|253326074|gb|ACT30676.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253980326|gb|ACT45996.1| DNA methylase M [Escherichia coli BL21(DE3)] gi|299881301|gb|EFI89512.1| N-6 DNA Methylase [Escherichia coli MS 196-1] Length = 529 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 96/485 (19%), Positives = 176/485 (36%), Gaps = 91/485 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T +YL G Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPEG 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 DL+S + FY L LG+ N + +A+F++ + Sbjct: 54 YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N ++ + ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460 + + V + + T++ + G KR D+ + +Y R Sbjct: 361 TVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRS 416 Query: 461 NGKFS 465 G++S Sbjct: 417 EGEWS 421 >gi|117921401|ref|YP_870593.1| N-6 DNA methylase [Shewanella sp. ANA-3] gi|117613733|gb|ABK49187.1| N-6 DNA methylase [Shewanella sp. ANA-3] Length = 530 Score = 221 bits (562), Expect = 5e-55, Method: Composition-based stats. Identities = 88/483 (18%), Positives = 164/483 (33%), Gaps = 68/483 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL ++ E T + + +K+ Sbjct: 2 TQNDIVQKLWNLCDILRD--DGINYSDYVTELVLLLFIKMVHENTEAELLDKH--TLPEG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNAKAIFEDF 118 +G + N + L L + +E + + + Sbjct: 58 YRWTDLHTKSGINLLNDYKALLLALSTGKRVMLDPNDPEKTIEVQVHN-----DPLISAI 112 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + RL + L +I K I+ + ++YE L+ + SE GA + Sbjct: 113 YADAQ-TRLREPRHLEQITKTLDQIDWFSAKRD--GLGDLYEGLLEKNASETKSGAGQYF 169 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231 TPR +++ + P + DP GT GFL A ++ Sbjct: 170 TPRVLINSMVRCI----------KPQAGEYIQDPAAGTAGFLIAAHEYIKAQPEYDDLSL 219 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 G EL P T + + L+ +E D + G+ L + K Sbjct: 220 KQIDFQRYHAYVGVELVPNTRRLALMNCLLHGMEGDDDGV----VHLGNALGNVGQSLKP 275 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + + S+ + FL H+ L+ Sbjct: 276 ADVILANPPFGTSKGGEASITRDDLTFD-----------TSNKQLAFLQHIYRNLKP--- 321 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 322 -GGRAAVVLPDNVLFEAGKG---TDIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 377 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVS-------RENG 462 +++ + Q ++ N KR +D+ +Y R G Sbjct: 378 KGSAKDKHQQEQCTENVWVYDLRTNMPSFGKRTPFSDNHLAPFEQVYGEHAGGLSPRTEG 437 Query: 463 KFS 465 ++S Sbjct: 438 EYS 440 >gi|326314828|ref|YP_004232500.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371664|gb|ADX43933.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 483 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 103/457 (22%), Positives = 165/457 (36%), Gaps = 66/457 (14%) Query: 88 LSTLGSTNTRNNLESYIASFSDNA-------KAIFEDFDFSSTI--ARLEKAGLLYKICK 138 + L ++ +L I N + +F D F S ++ +L Sbjct: 67 FAVLTNSGHMADLGKRIDQALANLEDRHPLLQGVFHDVSFDSAALGNPEQRQRILSDWLD 126 Query: 139 NFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 F G+E + D ++ E LI + +F TP V L +L Sbjct: 127 QFGGLEFDYRDENAAESVAFACETLISEVAAASGRRGAEFFTPPQVSRLIAQIL------ 180 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 P ++ DP CG+G L + GQE T A+ Sbjct: 181 ----QPEAGESVGDPCCGSGTLLLACSAFARARSGYEG----CQLFGQEKNGSTWALAKI 232 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVE 313 ML+ +L+ ++ G TL + F +SNPPF K + Sbjct: 233 NMLVHG-------ELTAQLEWGDTLKDPRLVADGRLREFDVVVSNPPFNVKDWGQEA--- 282 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 N GR+ G+P FL H+ L+ G GR A+V+S LF A Sbjct: 283 --AANDLYGRYRRGIPPRGTADYAFLSHMVETLKP---GRGRMAVVVSHGVLFRSGA--- 334 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 E +IRR LLE L++A++ALPT L T + L +L K++ +V I A+ + Sbjct: 335 ELQIRRQLLEEGLVDAVIALPTKLLPNTPLPIALLVLRKDKSDR---RVLFIKASRQFE- 390 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDK 492 GK + + D+ QI YV+R + + GY R + + L+ L+ Sbjct: 391 ---HGKTQNRLRDEDLAQIEATYVARADVE----------GYARLVSLEDILQNDCNLNV 437 Query: 493 TGLARLEADITWRKLSPL--HQSFWLDILKPMMQQIY 527 + L L +S L+ + + Sbjct: 438 ARYVEAVEPVCQVDLEALRAERSQLRAELEDLESRFA 474 >gi|255525760|ref|ZP_05392691.1| type I restriction-modification system, M subunit [Clostridium carboxidivorans P7] gi|255510583|gb|EET86892.1| type I restriction-modification system, M subunit [Clostridium carboxidivorans P7] Length = 412 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 94/458 (20%), Positives = 170/458 (37%), Gaps = 75/458 (16%) Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 + + IF D + + + E+A L I K GIE D D + IYE+LI + Sbjct: 16 KDFRGIFNDINLGDSRLGSSTNERAKSLNNIVKLVDGIEYKGDDGKDI-LGEIYEYLIGQ 74 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + +F TP V + ++ + LYDPT G+G L Sbjct: 75 FAASAGKKGGEFYTPHQVSKILAKVVTSGVE-----KSDEFFNLYDPTMGSGSLLLTVGQ 129 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + GQEL T+ + +++ + + + TL D Sbjct: 130 ELPKGTP-------MKYFGQELNTTTYNLARMNLMMHDVSYNNMVLNNA-----DTLESD 177 Query: 286 LFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDG 334 G + F ++NPP+ KW+ D+ + + RF L S Sbjct: 178 WPDGPDGKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRFSDYGKLAPASKA 230 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++H L N G AIVL LF G A E +IR+ L+E + ++ ++ LP Sbjct: 231 DYAFILHSIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQTLIEKNYLDTVIGLP 283 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 +LF+ T+I T + + + + + I+A++ + GK + +ND+ +I++ Sbjct: 284 ANLFYGTSIPTTILVFKKNRKTK---DILFIDASNDFEK----GKNQNNLNDENIDKIIN 336 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + R++ + + F L+ + L +++ Sbjct: 337 TFKERKDVDKYAHVAS---------IEEIKENEFNLNIPRYVDTFEEEAPIDLEEVNKQL 387 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552 D E E+ + + K L VK Sbjct: 388 EQD-------------NKEIAELEAEINEQLKILGVKI 412 >gi|72384681|gb|AAZ67632.1| DNA-methyltransferase putative [Haemophilus parasuis 29755] Length = 416 Score = 220 bits (560), Expect = 8e-55, Method: Composition-based stats. Identities = 62/401 (15%), Positives = 129/401 (32%), Gaps = 71/401 (17%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65 L +WK A+ L ++ ++L L+ + + + ++++Y Sbjct: 45 LNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQDIIKQRYTDPTSDFY 104 Query: 66 ----------------NIDLESFVKVAGYSFYNTSEYSLSTLG---STNTRNNL--ESYI 104 E F+ + + N + + E Sbjct: 105 LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTF 164 Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151 ++ F+ + I R+ + +L + FS T+ Sbjct: 165 KGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVEESILLGLIDLFSDTNFTRPTLDGKQI 224 Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ ++YE+ + +F + + TP+ +V L +L Sbjct: 225 SLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYKG 273 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGF + + + + GQE P T + M IR +E D Sbjct: 274 RIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEFD 330 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + + T S K+ + ++NPPF K + R+ G Sbjct: 331 FGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWNESLAQDPRWQYG 377 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 +P + + +L H+ L GR A++L++ + + Sbjct: 378 IPPEGNANFAWLQHMIYHLSP----NGRMALLLANGSMSSN 414 >gi|317132803|ref|YP_004092117.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3] gi|315470782|gb|ADU27386.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3] Length = 231 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 7/214 (3%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-- 61 + + + +NFIWK A+ L GDFK +++G VILPFT+L RL+ L PT+ V E + Sbjct: 1 MSINISEKSNFIWKIADILRGDFKQSEYGDVILPFTVLCRLDSVLAPTKERVMEIHRQGM 60 Query: 62 FGGSNIDLESFVKVA-GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDF 118 F L F + G FYN SE++ + L N +NL YI FS+NA+ I E F Sbjct: 61 FKTEYAKLAGFKSITGGLKFYNISEFTFAKLKDDAANIADNLTDYIKGFSENARMILESF 120 Query: 119 DFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 D S IARL+KA LLY + F I+LHPD V + M I+E LIR+F +E A + Sbjct: 121 DIYSQIARLDKANLLYLVVTRFVDDIDLHPDRVSNNEMGYIFEELIRKFSEMSNETAGEH 180 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 TPR+V+ L A+L DPD PG + LY+ Sbjct: 181 FTPREVIRLMVAMLFDPDM-RLITEPGFMAKLYE 213 >gi|293393085|ref|ZP_06637400.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM 4582] gi|291424231|gb|EFE97445.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM 4582] Length = 529 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 114/595 (19%), Positives = 208/595 (34%), Gaps = 105/595 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T E+YL G Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--EEYLPVG 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 DL+S + FY L LG+ + +A+F+ + Sbjct: 54 YRWDDLKSRIGQEQLQFY---RNLLVHLGADEQKL------------VQAVFQSVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N ++ + D ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPKQLTELVSNMDSLDWYNGSDGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIVHLL----------KPQPREIVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPFG + + S+ + F+ H+ L G Sbjct: 262 VVMTNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + + V + + T++ + G KR + + +Y +G R Sbjct: 361 TVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGVDPHGLSPRP 416 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 +F +V + + + +A WRK S + ++ Sbjct: 417 EGEWSFNAEEAEVADSE------ENQNIDQHQATSRWRKFS-------REWIRSAKSDSL 463 Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP-----RADPVTDV 577 W + K+SI ++ V + + A G D AD V D Sbjct: 464 DISWLKD--KDSIDADNLPEPDV-LVAEAMTELVQAMGELDALMRELGADEVADA 515 >gi|254225987|ref|ZP_04919588.1| N-6 DNA Methylase family [Vibrio cholerae V51] gi|125621521|gb|EAZ49854.1| N-6 DNA Methylase family [Vibrio cholerae V51] Length = 552 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 94/474 (19%), Positives = 169/474 (35%), Gaps = 80/474 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +WK ++L + + L L+ + T Sbjct: 2 NNNDLVSKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----EDLL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + K G + L LG N +AIF++ + Sbjct: 51 PKGYRWDDLKKKMGQEQHQFYRKLLVQLGDDNHAI------------VRAIFQNAN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + L ++ N ++ + + ++YE L+++ +E GA + TP Sbjct: 95 -TTIREPKQLTELVSNMDSLDWYDNDGTGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 153 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------S 232 R ++ L+ P + DP GT GFL +A ++ Sbjct: 154 RSLISTIVELI----------KPQPREIIQDPAAGTAGFLIEADKYIKAQTNDLDELPLD 203 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + G EL PET + + L+ +E D I+ G+TL + + Sbjct: 204 DQEFQRTKAFVGLELVPETRRLALMNCLLHDIEGDENEGA---IRLGNTLGSAGESLPKA 260 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + L+NPPFG + + + + F+ H+ + LE Sbjct: 261 NVILTNPPFGSAASTNITRTF--------------VHPTGNKQLCFIQHIYDALEP---- 302 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GGRAA+V+ + LF G G +EIRR L++ + I+ LPT +F+ + T + Sbjct: 303 GGRAAVVIPDNVLFEGGKG---TEIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFQK 359 Query: 413 ---RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + +G + I D+ T+I G KRR + D + Y NG+ Sbjct: 360 GTQENPMQDKGCTKEIWVFDMRTNINTFG-KRRPLTDKHFEAFIAAYGEDPNGQ 412 >gi|126667623|ref|ZP_01738592.1| type I restriction-modification system, M subunit [Marinobacter sp. ELB17] gi|126627892|gb|EAZ98520.1| type I restriction-modification system, M subunit [Marinobacter sp. ELB17] Length = 576 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 99/488 (20%), Positives = 175/488 (35%), Gaps = 64/488 (13%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + +W + L ++ + LL ++ E T + +K+ Sbjct: 34 NMTNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGTLKKHP--LP 89 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 +G + N + L +L +T + + + AI ++ Sbjct: 90 EGCRWTDLNGKSGINLLNDYKRILLSL---STGRDSDGTLVHNDPLISAI-----YTDAQ 141 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 RL + L ++ K I+ + ++YE L+ + +E GA + TPR ++ Sbjct: 142 TRLREPRHLEQMIKTLDQIDWFSAQKD--GLGDLYEGLLEKNANETKSGAGQYFTPRALI 199 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHKI 236 + A + P + DP GT GFL A HV D Sbjct: 200 NTMVACI----------KPQAGEMIQDPAAGTAGFLIAADQHVKDQTDQLFDLNARQQAF 249 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ +E D I G+ L + K+ L Sbjct: 250 QRNDAFVGIELVPSTRRLALMNCLLHGMEGDEEGV----IHLGNALGQQGAGLKKADVIL 305 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG D + K S+ + FL H+ L+ GGRA Sbjct: 306 ANPPFGTSKGGDASITRDDL-----------TYKTSNKQLAFLQHIYRNLKP----GGRA 350 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS----- 411 A+VL + LF G +E+RR L+ + I+ LPT +F+ + T + + Sbjct: 351 AVVLPDNVLFEAGVG---TEVRRDLMHKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSAT 407 Query: 412 -NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 ++ E V + + L T++ + G KR + + +Y NG+ R Sbjct: 408 DKQQEENSTDNVWIYD---LRTNMTSFG-KRTPFGEQHLKPFEAVYGDDSNGQSPRTEGE 463 Query: 471 RTFGYRRI 478 +F +I Sbjct: 464 WSFHSDKI 471 >gi|255324373|ref|ZP_05365491.1| type I restriction-modification system, M subunit [Corynebacterium tuberculostearicum SK141] gi|255298560|gb|EET77859.1| type I restriction-modification system, M subunit [Corynebacterium tuberculostearicum SK141] Length = 374 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 162/385 (42%), Gaps = 45/385 (11%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +E++ L I ++L T D V + YE+L+R + S + TP++V Sbjct: 3 TVERSKRLATIMMAVDKLDLGSFTDTDIDVFGDAYEYLLRMYASNAGRSGGEHFTPQEVS 62 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + A+ + IR YDP G+G L + +G Sbjct: 63 EILAAIAV--------NRRSTIRRAYDPCTGSGSLLFRFAKVLGIDNITDG------LYG 108 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGK 303 QE+ P HA+ M + + + +I++G TL L + F +SNPP+ + Sbjct: 109 QEINPTNHALARMNMFLHGVPFEKF-----DIKRGDTLENPLHLEVQPFDAIVSNPPYSQ 163 Query: 304 KWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 KW + + RF P L S + F MH+ + LE G AAIV Sbjct: 164 KWPG-----KDDVTLINDPRFAPAGALAPKSYSDLAFTMHMLHHLEED----GVAAIVEF 214 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 L+ G A E IR++L++N+ ++A++ LP +LFF T+I+T + +L + Sbjct: 215 PGILYRGGA---EKTIRQYLVDNNFVDAVIQLPPNLFFGTSISTVILVLKKNRE---TND 268 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKV 480 V ++A + G K +N+D ++ ILD+Y + E + + ++ + + Sbjct: 269 VLFVDAAAHFV---KNGAK-NTLNEDNQQAILDLYFNHEAVEHQAELVSNDDIAAKDYTL 324 Query: 481 LRPLRMSFILDKTG--LARLEADIT 503 + + +A+L ADI Sbjct: 325 SVNSYVEKEDTREKVDIAQLNADIA 349 >gi|254164266|ref|YP_003047376.1| DNA methylase M [Escherichia coli B str. REL606] gi|253976169|gb|ACT41840.1| DNA methylase M [Escherichia coli B str. REL606] Length = 529 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 95/485 (19%), Positives = 175/485 (36%), Gaps = 91/485 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T +YL G Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPEG 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 DL+S + FY L LG+ N + +A+F++ + Sbjct: 54 YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N ++ + ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KSQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460 + + V + + T++ + G KR D+ + +Y R Sbjct: 361 TVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRS 416 Query: 461 NGKFS 465 G++S Sbjct: 417 EGEWS 421 >gi|78484677|ref|YP_390602.1| N-6 DNA methylase [Thiomicrospira crunogena XCL-2] gi|78362963|gb|ABB40928.1| Type I restriction-modification system, M subunit [Thiomicrospira crunogena XCL-2] Length = 709 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 95/582 (16%), Positives = 201/582 (34%), Gaps = 73/582 (12%) Query: 6 GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 ++ +WK+A+ L + ++ ++ LR + + + G Sbjct: 5 QQIEAIEKRLWKSADGLRSGSELASNEYFMPVMGIIFLRHAYSRYLKVKEEIVTTLPSRG 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDN---AKAIFE 116 G DL + + ++ L S + + + S + K Sbjct: 65 GKTRDLTLEDFSQKGAIFLNAKAQFDYLVSLTDSDDRAEAIIEAMESIEKDYDSLKGQLP 124 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 ++ S +L + +N + + + IYE+ + +F + + + Sbjct: 125 KDEYKSI-----PNEILGTLLRNLN--PDELKKMDGDIFGRIYEYFLTQFAGQGAHDGGE 177 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V + ++ ++DP CG+GG + + V H Sbjct: 178 FFTPISIVQMIVNVI-----------EPDHGKVFDPACGSGGMFVQSAHLVESM--HKNP 224 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---TLSKDLFTGKRFH 293 +L +G E T + + + LE I G+ T KD G Sbjct: 225 SQLLTFYGHEKNTTTTRLAKMNLQVHGLEG--------QIAGGNEAITYYKDPHEGLWGD 276 Query: 294 --YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANK 345 + ++NPPF K R GLP K+S+G+ L+ + + Sbjct: 277 TDFVMANPPFNVDE-------VDADKIKNDRRLVFGLPGVNKNGKVSNGNYLWASYFYSY 329 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L + GRA V+SS G E+E+R+ L++ ++A++ + ++ F+ ++ Sbjct: 330 L----SDTGRAGFVMSSQASSAGGK---EAEVRKELVKTGHVDAMIDIRSNFFYTRSVPC 382 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-------VS 458 LW + K +E KV +++A +++ R +K + +Q + + I+ Sbjct: 383 QLWFYNKGKPQEHLDKVLMVDARNVF---RKVTRKIYDFSLEQLQNLTSIFWLYRGQTNR 439 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL-SPLHQSFWLD 517 S + K + L A EA + + + + + Sbjct: 440 FIELVKSYIQQSLDLANALFKADQELPGLVEFTANMTAISEAVKPFYLIQDEPYVTQLNE 499 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559 + + I E+ VK + + +A + + + I Sbjct: 500 FQEALTLFIKDTKQYEAAVKVANDNWDATSNDLSLFNALIEQ 541 >gi|255693566|ref|ZP_05417241.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] gi|260620632|gb|EEX43503.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] Length = 494 Score = 217 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 102/532 (19%), Positives = 186/532 (34%), Gaps = 82/532 (15%) Query: 21 DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80 L G + +L L+ + N + SF Sbjct: 19 ILGGTLSVNQYKDYVLALLFLKSAS-------EYYKSNDSFQSDENKPFLRLLVSERSSF 71 Query: 81 YNTSEYSLSTLGS----TNTRNNLESYIASFSDNAK--AIFEDFDFSSTI--ARLEKAGL 132 +Y LGS L + S + I +F S I E+ Sbjct: 72 ----DYLYKELGSLELGKLINVALYELEQANSRVIEGYEINRAINFESNILGDTDERLSK 127 Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L ++ F + L D + +Y L+ F E + + +TP++V+ L L+ Sbjct: 128 LRELLHFFQKLTLTDDAGKLIDIGALYNLLLYIFAEEAGKKINNVLTPKEVIGLVAELIG 187 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 D D +L DP G+G L + V G++ GQE + Sbjct: 188 DNKDNN---------SLCDPVSGSGTLLVEVGKRVGIRGAN--------IFGQEANWNQY 230 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKD 308 A+ +++ + G +LS T KRF S PPF KW + Sbjct: 231 ALTKMNLMLNGFKDSTFF-------WGDSLSNPKLTDDGGLKRFDIVASIPPFADKWATE 283 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 E + GRF G+P S + ++ H+ L+ GRA +V+ + LF Sbjct: 284 ------EAEFDRYGRFQYGIPPRSQATWAYISHILASLKP----NGRAVVVVPAGVLFR- 332 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 + ES+IR ++E++L+EA++ LP +LF+ I+T + + + + + ++A Sbjct: 333 ---TSESKIRHQIIEHNLLEAVIELPQNLFYGAAISTAILVFRK---DRKTTQTLFMDAR 386 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 + S + ++D Q+L+ Y +G+ + ++ Sbjct: 387 KGYISNKGI----YKLSDTMVEQLLNTYKGFLSGEQVWQENSC--------------PAY 428 Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 I + + + D K ++ +Q+I FV E + Sbjct: 429 IATQEEVRNNKYDWQTVKYVEEKIERVEVDVEATLQRIEKLEKRLEFVNEQL 480 >gi|309809689|ref|ZP_07703545.1| type I restriction-modification system, M subunit [Lactobacillus iners SPIN 2503V10-D] gi|308170049|gb|EFO72086.1| type I restriction-modification system, M subunit [Lactobacillus iners SPIN 2503V10-D] Length = 353 Score = 217 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 85/381 (22%), Positives = 152/381 (39%), Gaps = 42/381 (11%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + YE+L+ + S + +F TP DV L T L + K Sbjct: 7 QDHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEVNK------- 59 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +YDP CG+G L K +GQE+ T+ +C M + +E D Sbjct: 60 -VYDPACGSGSLLLK------SLKVLGKEGVRNGFYGQEINITTYNLCRINMFLHDVEFD 112 Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 ++ TL+ + F +SNPP+ KW+ D + + RF P Sbjct: 113 KF-----DVACEDTLTSPQHWDDEPFELIVSNPPYSIKWDGDANPL-----LINDPRFAP 162 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L S + F+MH L G AAIV ++ G A E +IR++L++N Sbjct: 163 AGVLAPKSKADLAFIMHSLAWLAS----NGTAAIVCFPGIMYRGGA---EKKIRQYLVDN 215 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+ I+ LP++LFF T IAT + ++ K + R I+A++ + N + Sbjct: 216 NFIDCIIQLPSNLFFGTPIATCIMVIKKNKIDNRT---LFIDASNECVKVTN----NNKL 268 Query: 445 NDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 + +I+DI+ RE + + + Y + + + + ++ + Sbjct: 269 TPENIDRIVDIFTKREEIEHIAHLASYDEVKENDFNLSVSTYVEAEDTREKIDIVKLNAE 328 Query: 504 WRKLSPLHQSFWLDILKPMMQ 524 +++ Q +I K + + Sbjct: 329 IKEIVAREQVLRDEIDKIIAE 349 >gi|304396444|ref|ZP_07378325.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp. aB] gi|304355953|gb|EFM20319.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp. aB] Length = 529 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 92/482 (19%), Positives = 169/482 (35%), Gaps = 85/482 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T + Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G L LG+ N + +A+F++ + Sbjct: 51 PEGYRWDDLKARIGQDQLQFYRNLLVHLGADNQKL------------VQAVFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N ++ + ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREIVQDPAAGTAGFLIEADRYVKSQTNDLDDLDNDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D T H Sbjct: 204 QDFQIHRAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGETLPMAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 VVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIVETLLP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463 K + + + DL T++ + G KR DD + ++ R G+ Sbjct: 361 TVAKPTQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDDHLQPFERVFGEDPHGLSPRSEGE 419 Query: 464 FS 465 +S Sbjct: 420 WS 421 >gi|295398847|ref|ZP_06808839.1| type I restriction-modification system [Aerococcus viridans ATCC 11563] gi|294972911|gb|EFG48746.1| type I restriction-modification system [Aerococcus viridans ATCC 11563] Length = 360 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 143/391 (36%), Gaps = 67/391 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52 MT+ T + L +W +A+ L +++ +L + L L+ Sbjct: 1 MTKGTAT--ELYQALWTSADVLRSKMDASEYKNYLLGLIFYKYLSDTMLVHSSEMLDEKT 58 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTS-----EYSLSTLGS---------TNTRN 98 + E + + D E + Y S E + S L + + Sbjct: 59 ENLDEALDMYREAYADDEFSEEFQSALVYEMSYRIKPELTFSALMEEINNHTFQREHLQQ 118 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153 L I S+ + +FED D +S +L ++ + ++ K + L Sbjct: 119 GLRD-IEQSSNVFEDLFEDIDLNSK--KLGATPQKQNDTISQVMKALDNLNL--ANYDGD 173 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + + YE+LI +F + + A +F TP V L T + L + T+YDPT Sbjct: 174 ALGDAYEYLIGQFAEDSGKKAGEFYTPSQVSTLMTRIALANKED------KKGLTVYDPT 227 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L +A + + GQEL T+ + M + ++ + + Sbjct: 228 MGSGSLLLNASKY-------SNEASTIRYFGQELNTSTYNLARMNMFLHNVDPENQI--- 277 Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LP 329 ++ G TL D + F L NPP+ KW K ++ RF G LP Sbjct: 278 --LRNGDTLDADWPQDEPTNFDAVLMNPPYSAKWSAAKGFLD-------DPRFASYGVLP 328 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 S FL+H L+ G+ AIVL Sbjct: 329 PKSKADFAFLLHGYFHLKND----GKMAIVL 355 >gi|16132170|ref|NP_418769.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655] gi|89111058|ref|AP_004838.1| DNA methylase M [Escherichia coli str. K-12 substr. W3110] gi|238903437|ref|YP_002929233.1| DNA methylase M [Escherichia coli BW2952] gi|331650830|ref|ZP_08351858.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia coli M718] gi|135200|sp|P08957|T1MK_ECOLI RecName: Full=Type I restriction enzyme EcoKI M protein; Short=M.EcoKI gi|322812245|pdb|2Y7C|B Chain B, Atomic Model Of The Ocr-Bound Methylase Complex From The Type I Restriction-Modification Enzyme Ecoki (M2s1). Based On Fitting Into Em Map 1534. gi|322812246|pdb|2Y7C|C Chain C, Atomic Model Of The Ocr-Bound Methylase Complex From The Type I Restriction-Modification Enzyme Ecoki (M2s1). Based On Fitting Into Em Map 1534. gi|322812250|pdb|2Y7H|B Chain B, Atomic Model Of The Dna-Bound Methylase Complex From The Type I Restriction-Modification Enzyme Ecoki (M2s1). Based On Fitting Into Em Map 1534. gi|322812251|pdb|2Y7H|C Chain C, Atomic Model Of The Dna-Bound Methylase Complex From The Type I Restriction-Modification Enzyme Ecoki (M2s1). Based On Fitting Into Em Map 1534. gi|41753|emb|CAA29792.1| unnamed protein product [Escherichia coli K-12] gi|537191|gb|AAA97246.1| CG Site No. 621; alternate gene names hs, hsm, hsp, rm [Escherichia coli str. K-12 substr. MG1655] gi|1790808|gb|AAC77305.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655] gi|85677089|dbj|BAE78339.1| DNA methylase M [Escherichia coli str. K12 substr. W3110] gi|238860824|gb|ACR62822.1| DNA methylase M [Escherichia coli BW2952] gi|260450838|gb|ACX41260.1| N-6 DNA methylase [Escherichia coli DH1] gi|315138904|dbj|BAJ46063.1| DNA methylase M [Escherichia coli DH1] gi|331051284|gb|EGI23333.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia coli M718] Length = 529 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 89/488 (18%), Positives = 168/488 (34%), Gaps = 97/488 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + E Y Y L S + L+ Y + ++ K + + F Sbjct: 42 ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + + + N ++ + ++YE L+++ +E GA + Sbjct: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + H +NPPFG + + S+ + F+ H+ L Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + + V + + T++ + G KR D+ + +Y Sbjct: 358 TKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLS 413 Query: 459 -RENGKFS 465 R G++S Sbjct: 414 PRTEGEWS 421 >gi|145631985|ref|ZP_01787737.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae R3021] gi|144982369|gb|EDJ89949.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae R3021] Length = 338 Score = 217 bits (552), Expect = 7e-54, Method: Composition-based stats. Identities = 82/312 (26%), Positives = 132/312 (42%), Gaps = 41/312 (13%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + YE LI + + + +F TP+ V L L L D + K +YDP G Sbjct: 1 GDAYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAG 52 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L A + GQE+ T+ + M + + D + Sbjct: 53 SGSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 101 Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332 I G+TL F + F +SNPP+ KW D RF P L S Sbjct: 102 IALGNTLMNPQFGDDKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGVLAPKS 156 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 F++H + L +G GRAAIV + G A E +IR++L++N+ ++A++A Sbjct: 157 KADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIA 209 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LFF T+IA + +LS K + Q I+A+ L+ I+ ++ QI Sbjct: 210 LAPNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQI 262 Query: 453 LDIYVSRENGKF 464 L ++ +E+ Sbjct: 263 LKLFADKEDVPH 274 >gi|86143513|ref|ZP_01061898.1| type I restriction-modification system specificity subunit [Leeuwenhoekiella blandensis MED217] gi|85829960|gb|EAQ48421.1| type I restriction-modification system specificity subunit [Leeuwenhoekiella blandensis MED217] Length = 513 Score = 217 bits (552), Expect = 7e-54, Method: Composition-based stats. Identities = 97/491 (19%), Positives = 175/491 (35%), Gaps = 60/491 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63 + +++ + IW A L D +G I L+ + E Sbjct: 2 TDSTIISKIWNLASVLRDDGVG--YGDYLEQITYLLFLKMAD-----------ELNKPPY 48 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFS 121 + V G + TL + S + K + F+ Sbjct: 49 NKGLKFPKLKDVDGNEIQDGETCDWETLSGKRGAELESFYSQLLRSLSTEKGMLGQI-FT 107 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +++ L K+ + + + IYE L+++ + GA + TPR Sbjct: 108 KSQNKIQDPAKLLKVIDMIDREDWNMMGAD--IKGKIYEGLLQKNAEDTKSGAGQYFTPR 165 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIP 237 ++ A + P +T+ DP CGTGGF A + + + + Sbjct: 166 SLIQAIVACV----------QPQPKKTIADPACGTGGFFLAAYDWIVEHHKLDKEEKQFL 215 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 HG E+ T +C+ M + + D I L D GKRF Y L+ Sbjct: 216 KNNTFHGNEIVANTRRMCIMNMYLHNI---GEIDGEPFINPNDALIAD--DGKRFDYVLA 270 Query: 298 NPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 NPPFGKK E E + + R S+ + FL H+ +L+ G+ Sbjct: 271 NPPFGKKSSMTITNEEGEQEKEDLSYNRQDFWET-SSNKQLNFLQHIKTQLK----INGK 325 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+VL + LF G AG E+R+ LL+ + I+ LPT +F+R + + K Sbjct: 326 AAVVLPDNVLFEGGAG---EEVRKQLLKTADLHTILRLPTGIFYRPGVKANVLFF-KNKP 381 Query: 416 ---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470 E ++ + + + + K++ + + + +Y + N K + + Sbjct: 382 ASKEAWTREIWFYD----YRTNVHHTLKKKPMLLSDLEEFIKLYNSSNINNRKETWSKEN 437 Query: 471 RTFGYRRIKVL 481 +R+ Sbjct: 438 EEGRWRKYTYE 448 >gi|332520739|ref|ZP_08397201.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix algicola 5H-3-7-4] gi|332044092|gb|EGI80287.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix algicola 5H-3-7-4] Length = 467 Score = 216 bits (551), Expect = 9e-54, Method: Composition-based stats. Identities = 95/470 (20%), Positives = 166/470 (35%), Gaps = 77/470 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + N +W L D + + + L+ E T Y Sbjct: 1 MALTTQEIVNKLWNLCNVLRDDGITYHQYLNELTFILFLKMA----EET------DYNDK 50 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 E+ + G L LG+ +T N + I +++ Sbjct: 51 LPEGYRWENLKQKEGVELATFYRKLLLHLGTESTG------------NIQKI-----YNN 93 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +++ L KI K+ ++ D + +YE L+ + SE GA + TPR Sbjct: 94 AQTSIQEPANLRKIIKHIDELDWFEAK--DEGLGEMYEGLLEKNASEKKSGAGQYFTPRP 151 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHK 235 ++++ L+ P + L DP CGT GF+ A +++ + Sbjct: 152 LINVMVRLM----------DPKVGERLNDPACGTYGFMIAAHHYILKHNDIYNLTEEQNN 201 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL +TH + + + + NI G +LS + K Sbjct: 202 HLQTEQYSGCELVGDTHRLAMMNAFLHGMGG--------NIALGDSLSSYGESIKNMDLV 253 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG K K G+ + S+ + FL + L GG R Sbjct: 254 LANPPFGTK------------KGGDRPTRTDLVYPTSNKQLNFLQGIYRSL--HTRGGAR 299 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+VL + LF G +R+ L+E + I+ LPT +F+ + T + KT Sbjct: 300 AAVVLPDNVLFEDGDGQ---NVRKDLMEKCNLHTILRLPTGIFYAAGVKTNVLFFERGKT 356 Query: 416 EERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 ++ K V + + T++ G KR + Y +++ K Sbjct: 357 DKANTKNVWFYD---MRTNMPKFG-KRTPFTESYFADFEKAYTAKDRNKI 402 >gi|218708016|ref|YP_002415535.1| DNA methylase M [Escherichia coli UMN026] gi|293403007|ref|ZP_06647104.1| DNA methylase M [Escherichia coli FVEC1412] gi|298378534|ref|ZP_06988418.1| type I restriction enzyme EcoKI M protein [Escherichia coli FVEC1302] gi|300899293|ref|ZP_07117559.1| N-6 DNA Methylase [Escherichia coli MS 198-1] gi|301646865|ref|ZP_07246711.1| N-6 DNA Methylase [Escherichia coli MS 146-1] gi|218435113|emb|CAR16069.1| DNA methylase M [Escherichia coli UMN026] gi|291429922|gb|EFF02936.1| DNA methylase M [Escherichia coli FVEC1412] gi|298280868|gb|EFI22369.1| type I restriction enzyme EcoKI M protein [Escherichia coli FVEC1302] gi|300357072|gb|EFJ72942.1| N-6 DNA Methylase [Escherichia coli MS 198-1] gi|301074918|gb|EFK89724.1| N-6 DNA Methylase [Escherichia coli MS 146-1] Length = 529 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 89/488 (18%), Positives = 168/488 (34%), Gaps = 97/488 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + E Y Y L S + L+ Y + ++ K + + F Sbjct: 42 ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + + + N ++ + ++YE L+++ +E GA + Sbjct: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + H +NPPFG + + S+ + F+ H+ L Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + + V + + T++ + G KR D+ + +Y Sbjct: 358 TKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLS 413 Query: 459 -RENGKFS 465 R G++S Sbjct: 414 PRTEGEWS 421 >gi|153833416|ref|ZP_01986083.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01] gi|148870304|gb|EDL69234.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01] Length = 528 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 105/584 (17%), Positives = 190/584 (32%), Gaps = 88/584 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ E T Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----EETGQE-----GDLL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G + L LG+ E I +AIF++ + Sbjct: 51 PEDFRWSKLKAKVGQDQHQFYRNMLVQLGAD------EHAI------VRAIFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N +E ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPAQLTELVANMDSLEWFDGGQGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233 ++ ++ P + DP GT GFL +A ++ Sbjct: 154 SLISTIIKVM----------QPQPREIIQDPAAGTAGFLIEADKYIKANTNDLEDLSDDD 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + G EL PET + + L+ +E D D I+ G+TL + Sbjct: 204 QEFQMKKAFVGLELVPETRRLALMNCLLHDIEGD---DNEGAIRLGNTLGSAGENLPKAD 260 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFG + + + + F+ H+ + LE G Sbjct: 261 VILTNPPFGSAASTNITRTF--------------VHPTGNKQLCFMQHIYDALEP----G 302 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 GRAAVVIPDNVLFEGGKG---TDIRRDLMDKCNLHTILRLPTGIFYAAGVKTNVLFFQKG 359 Query: 414 KTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 E + T ++ N KRR + + ++ Y + +NG+ Sbjct: 360 TPENPQQDKGCTVDTWVFDMRTNMNTFGKRRPLTEKHFDAFVNAYGADKNGQS------- 412 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 R V L F + + + WRK S + + Sbjct: 413 ---VREEGVYETLGSIFAEGEDSVTHTLENSRWRKFSREYIRDQKGDSLDISWLKDLEAT 469 Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 + + ++ + S I + A G D A+ Sbjct: 470 SAENLPAPELLAGEAMAELTEAMSEIYQLMQALG-ADDVAEGQK 512 >gi|24375749|ref|NP_719792.1| type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] gi|24350692|gb|AAN57236.1|AE015859_5 type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] Length = 537 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 105/583 (18%), Positives = 200/583 (34%), Gaps = 92/583 (15%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 T S + + +W + L ++ + LL ++ E T + + K+ Sbjct: 4 TSSNSDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGLLNKH--TLP 59 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + G + + + L TL S + + I + +A+ Sbjct: 60 TGCRWTDLNDKDGLNLLDDYKRILLTLSTGKDSEGNTLHADPLILAIYADAQ-------- 111 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 RL + L ++ K+ I+ + ++YE L+ + +E GA + TP Sbjct: 112 ----TRLREPRHLKQLIKSLDSIDWFSAQKD--GLGDLYEGLLEKNANETKSGAGQYFTP 165 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SH 233 R ++ ++ +P + DP GT GFL A + + Sbjct: 166 RALIDSMVRVI----------NPQAGEVIQDPAAGTAGFLIAAHEFIKNADNYDDLTLKE 215 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + G EL P T + + L+ +E D + G++L + + + Sbjct: 216 IEHLRNKAFIGVELVPSTRRLALMNCLLHGMEGDDEGV----VHLGNSLGQVGMSLPKAD 271 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFG D + S+ + FL H+ L+ G Sbjct: 272 IILANPPFGTSKGGDASITRDDL-----------TYPTSNKQLAFLQHIYRNLKP----G 316 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRAA+VL + LF G +++RR L+ + I+ LPT +F+ + T + + Sbjct: 317 GRAAVVLPDNVLFEAGVG---TDVRRDLMYKCNLHTILRLPTGIFYAAGVKTNVLFFTKG 373 Query: 414 KTEERRGKVQLINAT------DLWTSIRNEGKKRRIINDDQRRQILDIYV---------- 457 K+Q N T DL T++ N G KR + +Y Sbjct: 374 SEA---DKLQEENCTTNTWVYDLRTNMPNFG-KRTPFGEQHLTPFEAVYDPSSHSREGGN 429 Query: 458 ----SRENGKFSRMLDYRTFGYRRI---KVLRPLRMSFI-LDKTGLARLEA---DITWRK 506 +R+ G++S + + R + + + + + DI+W K Sbjct: 430 PDLSARKEGEWSFNAEAVEIETTEVNQGIDERLAKSRWRVFSREFIRDTKGDSLDISWLK 489 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 S + L + + + E++ + LK Sbjct: 490 DSNSVDAADLGTPEELAGEAMTELKGALADLEALMKSLGAELK 532 >gi|218550388|ref|YP_002384179.1| DNA methylase M [Escherichia fergusonii ATCC 35469] gi|218357929|emb|CAQ90573.1| DNA methylase M [Escherichia fergusonii ATCC 35469] Length = 529 Score = 215 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 89/488 (18%), Positives = 168/488 (34%), Gaps = 97/488 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + E Y Y L S + L+ Y + ++ K + + F Sbjct: 42 ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + + + N ++ + ++YE L+++ +E GA + Sbjct: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + H +NPPFG + + S+ + F+ H+ L Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + + V + + T++ + G KR D+ + +Y Sbjct: 358 TKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFEHVYGEDPHGLS 413 Query: 459 -RENGKFS 465 R G++S Sbjct: 414 PRTEGEWS 421 >gi|205359887|ref|ZP_02833022.2| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342263|gb|EDZ29027.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 533 Score = 215 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 86/490 (17%), Positives = 166/490 (33%), Gaps = 97/490 (19%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLA 61 + + L +WK ++L + + L L+ Sbjct: 4 SMNNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----------------- 44 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDF 118 + + + Y Y L S + L+ Y + + K + + Sbjct: 45 -KETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRNLLVHLGADEKKLVQAV 93 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F + + + L ++ + ++ + ++YE L+++ +E GA Sbjct: 94 -FQNVNTTITQPKQLTELVSSMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 152 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233 + TPR ++ LL P + DP GT GFL +A +V Sbjct: 153 YFTPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTHDLDD 202 Query: 234 -----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 203 LDGDAQDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGEN 260 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + +NPPFG + + S+ + F+ H+ L Sbjct: 261 LPQADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP 306 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 307 ----GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 359 Query: 409 ILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---- 458 + + + V + + T++ + G KR + + +Y Sbjct: 360 FFTKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHG 415 Query: 459 ---RENGKFS 465 R G++S Sbjct: 416 LSPRTEGEWS 425 >gi|251791238|ref|YP_003005959.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya zeae Ech1591] gi|247539859|gb|ACT08480.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya zeae Ech1591] Length = 533 Score = 215 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 103/573 (17%), Positives = 194/573 (33%), Gaps = 72/573 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + +W + L ++ + LL ++ E T + + +++ Sbjct: 2 SNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAELLDQH--ILPEG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + N + L +L +T + + +AI ++ R Sbjct: 58 CRWADLNNKSGLTLLNDYKQILFSL---STGKTADGKLVHDDALIRAI-----YADAQTR 109 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L + L ++ + I+ + + ++YE L+ + SE GA + TPR +++ Sbjct: 110 LREPRHLAQMIRTLDQIDWF--SAQRDGLGDLYEGLLEKNASETKSGAGQYFTPRPLINS 167 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPP 238 + P + DP GT GFL A + + Sbjct: 168 MVRCI----------KPQAGEVIQDPAAGTAGFLIAADQFIKQLTNSLYELDLKQQEFQR 217 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G EL P T + + L+ +E D + QG+ L L+N Sbjct: 218 KKAFIGIELVPSTRRLALMNCLLHNMEGDDEGV----VHQGNALGMAGSRLPNADVILAN 273 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG + + K S+ + FL H+ L+ GGRAA+ Sbjct: 274 PPFGTSKGGEASITRDDL-----------TFKTSNKQLAFLQHIYRNLKP----GGRAAV 318 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---RKT 415 VL + LF G ++IRR L+ + I+ LPT +F+ + T + S Sbjct: 319 VLPDNVLFEAGVG---TDIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFSKGTVNNP 375 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 ++ + + DL T++ + G KR + +Y +G+ R +F + Sbjct: 376 QQDENCTENVWVYDLRTNMPSFG-KRTPFGETHLAPFEAVYGDDPHGQSPRTEGEWSFTH 434 Query: 476 RRIKVLRPLRMSFILDKTGLARLE---------ADITWRK-----LSPLHQSFWLDILKP 521 + + E DI+W K + + + Sbjct: 435 TDDSAELSDDQRLETSRWRVFSREWIRDSKGDSLDISWLKDHNSIDAASLPEPGILAAEA 494 Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 M + G ++ ++E +EA KV Sbjct: 495 MGELTQALGELDALLRELGADDEADAQKVLLQA 527 >gi|268609820|ref|ZP_06143547.1| type I restriction-modification system methyltransferase subunit like protein [Ruminococcus flavefaciens FD-1] Length = 452 Score = 215 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 80/416 (19%), Positives = 164/416 (39%), Gaps = 56/416 (13%) Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFEDFDFSSTIARLEKAGLLYK 135 FY S + + N++ I + + + + + Sbjct: 2 FYLKETARWSYIVKNASANDIAVIIDQAMADIEDSNPPLKGALPLNLFATLGADKSKIKD 61 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + N + I + ++ +YE+ ++ + + ++ +F TP VV L ++ Sbjct: 62 LIDNVNQIS-EERFQEEDLIGRVYEYFLQVYAASGTKEDGEFYTPACVVKLIAEMI---- 116 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 +YDP CG+GG ++ V + + GQE P+T +C Sbjct: 117 -------EPYSGVVYDPCCGSGGMFVQSLKFVDRHNGN---RQKVSIIGQESNPDTWRLC 166 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 + IR + + + ST + DL K Y ++NPPF E Sbjct: 167 KMNLAIRGIAHNLGDTNA------STFTNDLHKDKTVDYIMANPPFNL------KGWRAE 214 Query: 316 HKNGELGRFGPG----LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 + RF +P +++ + +++H+ +KL++ G A +L++ L A Sbjct: 215 DELVNDSRFMRAGYSVMPPVANANYAWILHMLSKLDVNH---GVAGFLLANGALNASDA- 270 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE---------ERRGKV 422 E +R+ +LE D +EAI+ LP D+F+ T+I+ LWI++ K +R +V Sbjct: 271 --EGTLRKEILERDRVEAIIVLPRDMFYTTDISVTLWIVNMNKKACTVNGRQLRDRTNEV 328 Query: 423 QLINATDLWTSI------RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 ++ ++I + + KK+ + D+Q + IY + ++ + + Sbjct: 329 LFMDLRSWDSNIEEIVIDKGKRKKKTVFTDEQIAEAKTIYNNWQSSDTTLYANIPE 384 >gi|120552975|ref|YP_957326.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] gi|120322824|gb|ABM17139.1| N-6 DNA methylase [Marinobacter aquaeolei VT8] Length = 539 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 98/484 (20%), Positives = 172/484 (35%), Gaps = 79/484 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL ++ E T + +K+ Sbjct: 2 TNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGTLQKHP--LPEG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLES--YIASFSDNAKAIFEDFDFSS 122 K G + T + L L G N + I + +A+ Sbjct: 58 CRWTDLSKQDGQNLLETYKRMLLALSTGKDGQGNQIHDDPLITAIYSDAQ---------- 107 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 RL + L ++ I+ + ++YE L+ + +E GA + TPR Sbjct: 108 --TRLREPRHLRQMVATLDQIDWFSAQKD--GLGDLYEGLLEKNANETKSGAGQYFTPRA 163 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHK 235 +++ L P + DP GT GFL A ++ D + K Sbjct: 164 LINTMVRCL----------KPQPGERIQDPAAGTAGFLIAAHEYIKGQTDDLYDLTTEQK 213 Query: 236 IPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + G EL P T + + L+ +E D + G+ L + ++ Sbjct: 214 AFQTTKAYVGIELVPGTRRLALMNCLLHGMEGDAEGV----VHLGNALGQTGAGLEKADV 269 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG D + K S+ + FL H+ L+ GG Sbjct: 270 ILANPPFGTSKGGDASITRDDL-----------TYKTSNKQLAFLQHIYRNLKP----GG 314 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G +++RR L+ + I+ LPT +F+ + T + + Sbjct: 315 RAAVVLPDNVLFEAGVG---TDVRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGS 371 Query: 415 TEERRGKVQLINAT------DLWTSIRNEGKKRRIINDDQRRQILDIYVS-------REN 461 K Q + T DL T++ + G KR D + D+Y R+ Sbjct: 372 AA---DKYQEEHCTEHVWVYDLRTNMPSFG-KRTPFGDQHLKPFEDVYGDSPNGDSERKE 427 Query: 462 GKFS 465 G++S Sbjct: 428 GEYS 431 >gi|146281028|ref|YP_001171181.1| type I restriction-modification system, M subunit [Pseudomonas stutzeri A1501] gi|145569233|gb|ABP78339.1| type I restriction-modification system, M subunit [Pseudomonas stutzeri A1501] Length = 515 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 110/569 (19%), Positives = 190/569 (33%), Gaps = 78/569 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + + +W + L ++ + LL ++ E ++ + + Sbjct: 2 TNSDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMEYEQVQNN--DSFAHKLPEG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + L L N + IA+ +A+ R Sbjct: 58 ARWPDLAGKSGLNLLGHYRQMLLDL-----GKNSDPLIAAIYADAQ------------TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L ++ K+ GI+ + ++YE L+ + SE GA + TPR ++ Sbjct: 101 LKEPRHLEQLIKSLDGIDWFSARQD--GLGDLYEGLLEKNASETKSGAGQYFTPRPLIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--------PP 238 L P T+ DP GT GFL A ++ H Sbjct: 159 IINCL----------KPQPGETIQDPAAGTAGFLIAADAYIKRHTDDHYDLDAKAQAFQR 208 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G EL P T + + L+ +E D + G+ L + + LSN Sbjct: 209 NRAFVGVELVPGTRRLALMNTLLHSMEGDEEGV----VHLGNALGQTGANLPKVDVILSN 264 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG K G K S+ + FL H+ L+ GGRAA+ Sbjct: 265 PPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRAAV 308 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---RKT 415 VL + LF G +++RR LL+ + I+ LPT +F+ + T + Sbjct: 309 VLPDNVLFEAGVG---TDVRRDLLDKCNLHTILRLPTGIFYAQGVKTNVLFFQKGTQDNP 365 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 + +G Q + DL +++ + G KR + D Y N S + G Sbjct: 366 RQEQGCTQRVWIYDLRSNMPSFG-KRTPFGAQHLKPFEDAYGEDANS-NSSRAENVE-GI 422 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 + R FI + L DI+W K + + L + + + AE Sbjct: 423 GELSRFRVFTRDFI--RERGDSL--DISWLKDADSLDAADLPAPEVLAGEAM----AELT 474 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAF 564 K L + + Sbjct: 475 EALHELEELMKALGAGDEVAAQKQLMAEV 503 >gi|320013189|gb|ADW08037.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331] Length = 461 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 113/520 (21%), Positives = 189/520 (36%), Gaps = 82/520 (15%) Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-SFVKVAGY 78 + L G D +++L LR + A G S + + G Sbjct: 15 DKLRGPLDIQDAQQLLLAVIFLRCVSDI------------PAGGASGDRPQWRQLAELGS 62 Query: 79 SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 S E + + SY+ +++I + L LL ++ Sbjct: 63 SLAGDHELTWA--LKQALDAWTSSYLDGGRPMSESIPDH---------LVAGPLLREVLG 111 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 + + +YE + RF ++ ++ TPR +V L +L Sbjct: 112 LVDRAD---------RLVELYEECLERFS--NNKKGGNYFTPRHLVRLLVEML------- 153 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 +P ++DP CG+GGFL ++ +V + G + G+++ P V Sbjct: 154 ---APRQGEQVFDPACGSGGFLVESARYVQEHG---GSSAAVGLVGRDINPRARQVAWMN 207 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + R LE+D + ++L D F NPPF K +D Sbjct: 208 LTARGLEADLGS------RPVNSLWADDTPAGAFDVVFVNPPFNLKLARD--------DL 253 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 R+ G P S+ + ++ H+ +KL GRAA++L F A +G IR Sbjct: 254 RYDSRWRYGEPPRSNANFAWIQHVVSKLTTR----GRAAMLLPDGATFTSGAAAG---IR 306 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 R L+ +DL+ A+VALP LF T+I+ WI S K ERRG+V ++A + G Sbjct: 307 RGLVADDLVSAVVALPAGLFPHTSISASAWIFSREKPAERRGQVLFVDARKQGNLV---G 363 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 + RR +++ I D Y S ++ R R V F L Sbjct: 364 RGRRTLSEGAIESIADTYRSW----YAESYQDRPGWCRSATVEEIAAQEFNLQAVRYVGA 419 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 A+ +P QS + + + + A E Sbjct: 420 PAE------APAPQSAEQRVAELTRELYGHFADAARLETE 453 >gi|167991323|ref|ZP_02572422.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330316|gb|EDZ17080.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249610|emb|CBG27480.1| type I restriction enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996883|gb|ACY91768.1| DNA methylase M [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301161008|emb|CBW20545.1| type I restriction enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323132867|gb|ADX20297.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332991334|gb|AEF10317.1| DNA methylase M [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 529 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 101/588 (17%), Positives = 196/588 (33%), Gaps = 103/588 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T + Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G L LGS L + F + Sbjct: 51 PEGYRWDDLKSRIGQDQMQFYRNLLVQLGSD--EKKLVQAV---------------FHNV 93 Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +E+ L ++ ++ + ++YE L+++ +E GA + TPR Sbjct: 94 STTIEQPKQLTELVSYMDALDWYNGNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460 + + V + + T++ + G KR + + +Y RE Sbjct: 361 TVTNPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRE 416 Query: 461 NGKFS---RMLDYRTFGYRRIKVLRPLRMSFI-LDKTGLARLEA---DITWRKLSPLHQS 513 G++S + + R + + + ++ DI+W K + Sbjct: 417 EGEWSFNAEESEVADSEENKNTDQRQATSRWRKFSREWIRSAKSDSLDISWLKDKDSIDA 476 Query: 514 FWL-----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556 L + M + + G ++ ++E +EA + +++F Sbjct: 477 DSLPEPDVLAAEAMGELVQALGELDALMRELGAGDEADAQRQLLNEAF 524 >gi|261820962|ref|YP_003259068.1| Site-specific DNA-methyltransferase (adenine-specific) [Pectobacterium wasabiae WPP163] gi|261604975|gb|ACX87461.1| Site-specific DNA-methyltransferase (adenine-specific) [Pectobacterium wasabiae WPP163] Length = 529 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 95/485 (19%), Positives = 168/485 (34%), Gaps = 91/485 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T +YL G Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPVG 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 DL++ + FY L LG NL I F + Sbjct: 54 YRWDDLKARIGQDQLQFY---RKLLVELGQD--ERNLVQAI---------------FHNV 93 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +E+ L ++ ++ + ++YE L+++ +E GA + TPR Sbjct: 94 STTIEQPKQLTELVSYMDALDWYNGSKGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKLQTNDLEDLDTDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D H Sbjct: 204 QDFQIRRAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPLAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------IHPTSNKQLCFMQHIIETLHP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L+ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGRG---TDIRRDLMNKCRLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460 + + V + + T++ + G KR D + ++ R Sbjct: 361 AVSNPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFGDQHLQPFEQVFGDDPHGLSPRS 416 Query: 461 NGKFS 465 G++S Sbjct: 417 EGEWS 421 >gi|302336438|ref|YP_003801645.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella uli DSM 7084] gi|301320278|gb|ADK68765.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella uli DSM 7084] Length = 494 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 105/557 (18%), Positives = 206/557 (36%), Gaps = 81/557 (14%) Query: 6 GSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 S +++ +W A L ++D+ + + L+ + +P K Sbjct: 2 SSQSTINQKVWSMATVLMNDGVSNSDYLEQLTYLLFLKMADEYSKPPY-----KRDMRIP 56 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 + ++ G + EY L TLG T + I +S Sbjct: 57 GDCTWDTLKSKRGDELFRHYEYVLKTLGETG-------------GTLQQI-----YSGAQ 98 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 ++ +L ++ + ++ V +IYE L+++ + GA + TPR ++ Sbjct: 99 NKISNPAILSRVITMIDAEKW--SSMSSDVKGDIYEGLLQKVAEDTKSGAGQYFTPRALI 156 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPI 239 + P +T+ DP CG+GGFL A +++ D + Sbjct: 157 SAMVDCV----------QPQPGKTVVDPCCGSGGFLLAAKDYIEDSEHYTLDRDQRHFLR 206 Query: 240 L-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G E+ P T+ +C+ + + + + I + +L D G R+ Y L+N Sbjct: 207 YSTFAGWEIVPSTYKLCLMNLFLHNISD---FNGEPPIYRNDSLLAD--PGTRYDYVLTN 261 Query: 299 PPFGKKWEK---DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 PPFGKK + + +++E + R + S+ + F+ H+ L G Sbjct: 262 PPFGKKSSYSFTNDEGLQEEEEGTYNRRDFWAV--TSNKQLNFVQHIHTILRQD----GH 315 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413 AA+V+ + LF G A GE+ +RR LLE + I+ LPT +F+ + + NR Sbjct: 316 AAVVVPDNVLFEGGA--GET-VRRKLLETTNLHTILRLPTGIFYAQGVKANVIFFDNRPA 372 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRML 468 + + +V + + + + + K+R + + + +D Y RE +S Sbjct: 373 SPDWQTREVWIYD----YRTGVHHTLKQRPMTREHLQDFVDCYKPAAIGDREET-YSEEN 427 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 G R R + + + + D+L + ++ Sbjct: 428 PN---GRWR-------RFTLQEILDRDKASLDITWIKTGDDISEVQLSDLLAEIREKSDS 477 Query: 529 YGWAESFVKESIKSNEA 545 A S ++E + E Sbjct: 478 IASAVSRLEELLGDIEE 494 >gi|257083311|ref|ZP_05577672.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein [Enterococcus faecalis Fly1] gi|256991341|gb|EEU78643.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein [Enterococcus faecalis Fly1] Length = 454 Score = 215 bits (547), Expect = 3e-53, Method: Composition-based stats. Identities = 77/428 (17%), Positives = 163/428 (38%), Gaps = 51/428 (11%) Query: 110 NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + IF+ F S +A ++ + + S E D +S+IYE+L+ +F Sbjct: 45 DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQF 103 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + ++ + TP+++ ++ +L + ++YDPT G+G L ++ Sbjct: 104 ATVLASDMGQYYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASY 157 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + I GQE + + + +++ +E + I TL D Sbjct: 158 MKNSHKRGMIK----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDW 208 Query: 287 FTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSML 337 G + F ++NPP+ W + R+ G+ + Sbjct: 209 PDGVVDGKDNPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYA 260 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H L GR AI+L LF G A E IR+ L++ IE ++ P L Sbjct: 261 FLLHCLYHL----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKL 313 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F T+I + IL +T + ++A+ + ++ K+ + + +I+D V Sbjct: 314 FLNTSIPVCVLILRKNRTAS---DILFVDASREFEKLK----KQNHLRPEDVDKIVDTVV 366 Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 R+ + +S + + P + ++ + + + + + + Sbjct: 367 QRKEIEKYSHLATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEA 426 Query: 517 DILKPMMQ 524 ++L + Sbjct: 427 ELLAMLDD 434 >gi|16767769|ref|NP_463384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197262701|ref|ZP_03162775.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|730886|sp|P40813|T1M_SALTY RecName: Full=Type I restriction enzyme StySJI M protein; Short=M.StySJI gi|154130|gb|AAA19429.1| restriction-modification enzyme type I M subunit [Salmonella enterica] gi|16423092|gb|AAL23343.1| DNA methylase M, host modification [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240956|gb|EDY23576.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|312915622|dbj|BAJ39596.1| DNA methylase M [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222501|gb|EFX47573.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 529 Score = 215 bits (547), Expect = 3e-53, Method: Composition-based stats. Identities = 89/485 (18%), Positives = 163/485 (33%), Gaps = 91/485 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T + Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G L LGS L + F + Sbjct: 51 PEGYRWDDLKSRIGQDQMQFYRNLLVQLGSD--EKKLVQAV---------------FHNV 93 Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +E+ L ++ ++ + ++YE L+++ +E GA + TPR Sbjct: 94 STTIEQPKQLTELVSYMDALDWYNGNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460 + + V + + T++ + G KR + + +Y RE Sbjct: 361 TVTNPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRE 416 Query: 461 NGKFS 465 G++S Sbjct: 417 EGEWS 421 >gi|291543145|emb|CBL16255.1| Type I restriction-modification system methyltransferase subunit [Ruminococcus bromii L2-63] Length = 562 Score = 215 bits (547), Expect = 3e-53, Method: Composition-based stats. Identities = 110/523 (21%), Positives = 193/523 (36%), Gaps = 82/523 (15%) Query: 1 MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPT---- 51 M + SL N ++ L F ++L LR + E Sbjct: 1 MAKKKTDEKSLNIDNILFNCRNYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGVKAL 60 Query: 52 RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI-- 104 R + EK L NI F A ++ E ST+ +T L++ + Sbjct: 61 RQTLIEKGLDPDDENIKAAFFDDATFADGTYNLPIESRWSTIINTPAPKLNVALDTALIR 120 Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 K F + F++ L + KI + I ++ +YE+ + Sbjct: 121 LEEEDPQLKGCFINGTFTT--RNLAPNDI-KKIVDEVNKISHKEFGKDRDLIGYVYEYFL 177 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F ++ +F TP DVV L ++ TLYDP CG+GG + Sbjct: 178 KEFAVNATKEEGEFYTPHDVVQLIATMI-----------EPYNGTLYDPCCGSGGMFVQS 226 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 V + + +GQE EP T+ + + +R + + + S+ + Sbjct: 227 AALVKSKQGNLN---SINVYGQEKEPATYRLAKMNLALRGISHNLGS------EADSSFT 277 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHL 342 DL G RF+Y ++NPPF K + + R+ P S+ + +++H+ Sbjct: 278 HDLHEGLRFNYIMANPPFNLKGWYNDN-------LKNDPRWADYATPPESNANYAWILHI 330 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 + L+ G A +L++ L + +IR+ L+END +EAIV LP +LF T+ Sbjct: 331 LSHLKAD----GVAGFLLANGALNDSDT----LDIRQKLIENDRVEAIVVLPRELFITTD 382 Query: 403 IATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRII--------- 444 I+ LWIL+ K R ++ ++ + K+++ Sbjct: 383 ISVTLWILNRNKKGGNYHGRNLRNREHEILFMDLRQWKENPVKHENKKKVFLSSKDSKNT 442 Query: 445 ------NDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKV 480 Q + +IY + + G S YR +KV Sbjct: 443 ENITINLAGQIEKAAEIYHTWQNEGTVSEKYAVPEL-YRSVKV 484 >gi|320088960|emb|CBY98716.1| DNA methylase M, host modification [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 529 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 86/488 (17%), Positives = 165/488 (33%), Gaps = 97/488 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + + Y Y L S + L+ Y + + K + + F Sbjct: 42 ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRNLLVHLGADEKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + L ++ + ++ + ++YE L+++ +E GA + Sbjct: 91 QNVNTTITQPKQLTELVSSMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTHDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDAQDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + +NPPFG + + S+ + F+ H+ L Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + + V + + T++ + G KR + + +Y Sbjct: 358 TKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413 Query: 459 -RENGKFS 465 R G++S Sbjct: 414 PRTEGEWS 421 >gi|254430934|ref|ZP_05044637.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001] gi|197625387|gb|EDY37946.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001] Length = 487 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 91/470 (19%), Positives = 161/470 (34%), Gaps = 89/470 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W L D + + + L+ + Sbjct: 5 TTGDIVAKLWNLCNVLKDDGVTYHQYVSELTYLLFLKM--------------AKETGTEA 50 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIF 115 I E + L + LE Y + S + I Sbjct: 51 GIPEE---------------WRWDELETRQGLKQLEHYKLLLLELGSSSSGSSALVQEI- 94 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 F++ + + K L K+ + ++ + + ++YE L+++ E GA Sbjct: 95 ----FANASSFIRKPVTLNKLVEEIDKLDWYSARQE--GLGDLYEGLLQKNAEEKKSGAG 148 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--- 232 + TPR ++ A++ P + + DP GTGGFL A + + Sbjct: 149 QYFTPRPLIDAMVAVM----------QPQLGDVIQDPAAGTGGFLIAAQRWIREHQDISE 198 Query: 233 ----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + +G E +TH + + +++ L+ I+ G T+S D Sbjct: 199 LDEAQQQRFYQRTFYGMEHVQDTHRLALMNLMLHGLD---SVSGEGGIRYGDTMSSDGEG 255 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + L+NPPFG K G GR P S+ FL H+ L Sbjct: 256 LPKASLILTNPPFGTKKGG-----------GLPGRNDFTFP-TSNKQFCFLQHIYRALVP 303 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GGRAA+VL + LF G G +IR L++ + I+ LPT +F+ + T + Sbjct: 304 ----GGRAAVVLPDNVLFEGNVG---KQIRADLMDKCNLHTILRLPTGIFYAQGVKTNVL 356 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 S + + K + DL ++ G KR + + + Y S Sbjct: 357 FFSRGTSAKGNTKA--VWVYDLRANMPAFG-KRTPLTREHFAVFEEAYGS 403 >gi|325926905|ref|ZP_08188186.1| type I restriction-modification system methyltransferase subunit [Xanthomonas perforans 91-118] gi|325926912|ref|ZP_08188193.1| type I restriction-modification system methyltransferase subunit [Xanthomonas perforans 91-118] gi|325542721|gb|EGD14182.1| type I restriction-modification system methyltransferase subunit [Xanthomonas perforans 91-118] gi|325542728|gb|EGD14189.1| type I restriction-modification system methyltransferase subunit [Xanthomonas perforans 91-118] Length = 514 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 105/566 (18%), Positives = 192/566 (33%), Gaps = 77/566 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL L +E + + Sbjct: 2 THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPEG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + N L LG ++ + IA+ +A+ R Sbjct: 58 SRWPDLKSKSGLNLLNHYRQMLLNLGQSS-----DPMIAAIYADAQ------------TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L + G++ + ++YE L+++ +E GA + TPR ++ Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236 + P + + DP GT GFL A ++ Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPEVTAKKRSF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ ++ + + I+ G++LS L Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMD----GEGAGPIRLGNSLSNAGRELPPADIIL 264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG K G K S+ + FL H+ L+ GGRA Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 308 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G ++IRR L++ + ++ LPT +F+ + T + Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCNLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 R AT ++ N KR + + Y S NG S D G Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEEAYGSDPNG-ASPRTDEGEQG 424 Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 R R L +S++ D + ++ L+ + + L+ + + Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483 Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553 G + +++ E L+V +S Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSS 509 >gi|168243977|ref|ZP_02668909.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450433|ref|YP_002048548.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408737|gb|ACF68956.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336978|gb|EDZ23742.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 529 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 89/485 (18%), Positives = 162/485 (33%), Gaps = 91/485 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T + Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G L LGS L + F + Sbjct: 51 PEGYRWDDLKSRIGQDQMQFYRNLLVQLGSD--EKKLVQAV---------------FHNV 93 Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +E L ++ ++ + ++YE L+++ +E GA + TPR Sbjct: 94 STTIEHPKQLTELVSYMDALDWYNGNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPFG + + S+ + F+ H+ L G Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460 + + V + + T++ + G KR + + +Y RE Sbjct: 361 TVTNPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRE 416 Query: 461 NGKFS 465 G++S Sbjct: 417 EGEWS 421 >gi|218709368|ref|YP_002416989.1| type I restriction enzyme EcoKI M subunit [Vibrio splendidus LGP32] gi|218322387|emb|CAV18540.1| Type I restriction enzyme EcoKI, M subunit [Vibrio splendidus LGP32] Length = 484 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 91/472 (19%), Positives = 166/472 (35%), Gaps = 79/472 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ E T Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----EETGQE-----DDLL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 G + L LG+ + +AIF++ + Sbjct: 51 PEGYRWADLKAKLGQEQHQFYRNMLVQLGADDHAI------------VRAIFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N +E ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPAQLTELVDNMDKLEWFDGDTGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233 ++ ++ P + DP GT GFL +A ++ Sbjct: 154 SLISTIIKVM----------QPQPREVIQDPAAGTAGFLIEADKYIKSRTNDLDDLDDDD 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + G EL PET + + L+ +E D I+ G+TL T + + Sbjct: 204 QEFQMTKAFVGLELVPETRRLALMNCLLHDIEGDAEEGA---IRLGNTLGSAGETLPQAN 260 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFG + + + + F+ H+ + LE G Sbjct: 261 VILTNPPFGSASSTNITRTF--------------VHPTGNKQLCFMQHIYDALEP----G 302 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 GRAAVVIPDNVLFEGGKG---ADIRRDLMDKCNLHTILRLPTGIFYAAGVKTNVLFFQKG 359 Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + + +G + D+ T++ G KRR + + ++ Y S NG Sbjct: 360 TQQDPNQDKGCTKETWVFDMRTNMNTFG-KRRPLTEKHFDVFVNAYGSDTNG 410 >gi|167771559|ref|ZP_02443612.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM 17241] gi|167666199|gb|EDS10329.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM 17241] Length = 495 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 108/561 (19%), Positives = 197/561 (35%), Gaps = 81/561 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57 M+E T + + + +W L D +G + L L+ + +P Sbjct: 1 MSEQTTT---IISKVWGMCGPLRDDGVS--YGDYLEQLTYLIFLKMSDEYAKPPY----- 50 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 K + + + G + L TLG Sbjct: 51 KRETGIPTGCNWADMSDLKGVELEEKYKSILKTLGEQG-----------------GTLGK 93 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F ++ A +LY+I + + ++ V IYE L+++ +V GA + Sbjct: 94 I-FKGATNKINNAAILYRIVQMIDKEKWV--SMSTDVKGEIYEGLLQKNAEDVKSGAGQY 150 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------ 231 TPR ++ + P ++T+ DP CG+GGFL A +++ D Sbjct: 151 FTPRPLIQAMVKCI----------RPEPMKTVADPCCGSGGFLLAAQSYLTDPQYYNLDR 200 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G E+ P T + + + + + + I G L D G+R Sbjct: 201 EAKEFLKKEAFRGWEIVPATFKMSLMNLYLHNIGDLYGQVP---ITLGDALLTD--PGER 255 Query: 292 FHYCLSNPPFGKKWE--KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F Y L+NPPFGKK + E+E ++ R S+ + FL H+ L+ Sbjct: 256 FDYVLTNPPFGKKSALTFTNEEGEQEGEDLVYNRQDFWTT-SSNKQLNFLQHINTLLK-- 312 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+AA+V+ + LF G SGE+ IR+ LLE + I+ LPT +F++ + + Sbjct: 313 --ATGKAAVVVPDNVLFEGG--SGET-IRKKLLETCDLHTILRLPTGIFYKPGVKANVIF 367 Query: 410 LSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFS 465 R + + +V + + + + K+ + + Y +R + Sbjct: 368 FDKRPAGPDRQTKEVWIYDL----RTNMHFTLKQHPMTFGDLEDFIQRYNPENRHERHET 423 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +RR + L + DI W K L L + + + Sbjct: 424 WSEKNPEGRWRRFTAEKIL---------ARDKTSLDIFWIKDKSLADLDNLPAPEELARD 474 Query: 526 IYPYGWAESFVKESIKSNEAK 546 I + + + K Sbjct: 475 IMENLQSAMDGFSELLATLKK 495 >gi|160934947|ref|ZP_02082333.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753] gi|156866400|gb|EDO59772.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753] Length = 507 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 94/499 (18%), Positives = 175/499 (35%), Gaps = 77/499 (15%) Query: 10 SLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPT--RSAVREKYLA-- 61 + +W L D + + IL L+ L+ E ++ V + Y Sbjct: 5 DIVQKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMLDETGEENTLKADVLKAYQKSL 61 Query: 62 ---FGGSNIDLESFVKVAGYS----FYNTSEYSLSTLGSTNTRNNLESYIASFS----DN 110 +E + S YN S L+TL +N ++ Sbjct: 62 EQYARKKGKAVEQLTEEEKESRKPLLYNYSWEYLTTLEGIELKNYYMKLLSELGSTGIPK 121 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 I ++ ++ +E+ L KI + ++ + ++YE L+++ E Sbjct: 122 ISDI-----YTKAVSSIEEPKNLQKIISEINKLDWFEAKQE--GLGDLYEGLLQKNADEK 174 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH---- 226 GA + TPR ++ + T L+ SP +DP CGT GF+ A H Sbjct: 175 KSGAGQYFTPRVLIDVMTNLI----------SPKFGEKCFDPACGTFGFMISAYQHTTNG 224 Query: 227 --VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL + H + + + + +I +LS Sbjct: 225 VDLYSLSDQEMAAFQDSFYGVELVHDAHRLALMNAYLHNV--------PAHIFCEDSLSP 276 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 K F L+NPPFG K ++ + + S+ + FL + Sbjct: 277 SAKRLKGFDVILTNPPFGTKKGGERTSRDDISFQ------------TSNKQLNFLQVIYR 324 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ N R A+VL + LF A +RR L++ + I+ LPT +F+ + Sbjct: 325 SLKADGNA--RCAVVLPDNVLF---ADGDGVSVRRELMDFCNLHTILRLPTGIFYAQGVK 379 Query: 405 TYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 T + + KTE+ K V + L T++ + G K + + + Y + + Sbjct: 380 TNVLFFTRGKTEKDNTKEVWFYD---LRTNMPSFG-KTTPLKKEHFEGFVKAYTA--EDR 433 Query: 464 FSRMLDYRTFGYRRIKVLR 482 + + + R + Sbjct: 434 HAVEDERWSVFTREQIAEK 452 >gi|88707229|ref|ZP_01104916.1| type I restriction-modification system, M subunit [Congregibacter litoralis KT71] gi|88698522|gb|EAQ95654.1| type I restriction-modification system, M subunit [Congregibacter litoralis KT71] Length = 262 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 36/284 (12%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 +P+ + N YE+LI++F + A++F T R +VHL +L P + Sbjct: 1 MPEDELGNGYEYLIKQFADDSGHTAQEFYTNRTLVHLMAQML----------EPKAGEII 50 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 YDPTCGTGG L + V + + +GQEL T A+ +++ + Sbjct: 51 YDPTCGTGGMLISCLAEVKRTSGDTR---TMGLYGQELINITAAIARMNLVLHGV----- 102 Query: 270 RDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 +I+ G+TL + K F L+NPP+ K ++ + GR Sbjct: 103 --SDFDIRSGNTLHEPALIEGDRLKTFDVVLANPPYSIK-----KWNRVAWQSDQWGRNF 155 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G P F H+ ++ GR AI+ LF E+++R L+E D Sbjct: 156 LGTPPQGRADYAFFQHILKSMDPQT---GRCAILFPHGVLFRNE----EADMRTKLIEAD 208 Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 L+E ++ L +LF+ + + + I K ERRGK+ INA + Sbjct: 209 LLECVLGLGPNLFYNSPMEACVLICRTSKLSERRGKILFINALN 252 >gi|313674352|ref|YP_004052348.1| site-specific DNA-methyltransferase (adenine-specific) [Marivirga tractuosa DSM 4126] gi|312941050|gb|ADR20240.1| Site-specific DNA-methyltransferase (adenine-specific) [Marivirga tractuosa DSM 4126] Length = 504 Score = 214 bits (544), Expect = 6e-53, Method: Composition-based stats. Identities = 98/492 (19%), Positives = 182/492 (36%), Gaps = 60/492 (12%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63 + +SL + +W A L D +G I L+ + P Sbjct: 2 TESSLISKVWNFANVLRDDGVG--YGDYLEQITYLLFLKMADELTRPPY----------- 48 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---KAIFEDFDF 120 +D G+ + + TL LE+Y + + K I F Sbjct: 49 NKKMDFPRIKDTEGHEIEDGDYCNWETLSKKR-GAELEAYYSQMLRSLGTEKGILGQI-F 106 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + +++ L ++ + V +IYE L+ + S+ GA + TP Sbjct: 107 TKSQNKIQDPSKLLRVIDMIGKEQWTMVGAD--VKGDIYEGLLEKNASDTKSGAGQYFTP 164 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIP 237 R ++ A + +P +++++DP+CGTGGF A +++ + K Sbjct: 165 RSLIQAMVACV----------APEPMKSIHDPSCGTGGFFLAAYDYIIKNHELNKEQKAF 214 Query: 238 -PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G E+ T +C+ M + + I L D G R Y L Sbjct: 215 LKNSTFSGNEIVAGTRRLCLMNMFLHNIGEIDGETF---ISPNDALIAD--EGNRVDYVL 269 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFGKK E E + E R S+ + FL H+ + L+ G Sbjct: 270 ANPPFGKKSSMTITNEEGEQEKQELSYNRQDFWAT-SSNKQLNFLQHIRSLLK----ING 324 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 AA+VL + LF G SGE+ +R+ L++ + I+ LPT +F+ + + N+ Sbjct: 325 EAAVVLPDNVLFEGG--SGET-VRKELMKTTELHTILRLPTGIFYAHGVKANVLFFDNKP 381 Query: 415 T--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470 E V + + + + + K+ + + + ++ Y +R + K + + Sbjct: 382 ASKEAWTQDVWIYD----YRTNVHHTLKKNTMKLEDLQDFINCYNPSNRNDRKETWSEET 437 Query: 471 RTFGYRRIKVLR 482 +R+ Sbjct: 438 PDGRWRKYSYEE 449 >gi|91213999|ref|YP_543985.1| DNA methylase M [Escherichia coli UTI89] gi|117626661|ref|YP_859984.1| DNA methylase M [Escherichia coli APEC O1] gi|91075573|gb|ABE10454.1| DNA methylase M [Escherichia coli UTI89] gi|115515785|gb|ABJ03860.1| DNA methylase M [Escherichia coli APEC O1] gi|294493863|gb|ADE92619.1| type I restriction enzyme EcoKI M protein [Escherichia coli IHE3034] gi|307629516|gb|ADN73820.1| DNA methylase M [Escherichia coli UM146] gi|323950567|gb|EGB46445.1| N-6 DNA methylase [Escherichia coli H252] Length = 529 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 88/488 (18%), Positives = 167/488 (34%), Gaps = 97/488 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + E Y Y L S + L+ Y + ++ K + + F Sbjct: 42 ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + + + N ++ + ++YE L+++ +E GA + Sbjct: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + H +NPPFG + + S+ + F+ H+ L Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + V + + T++ + G KR D+ + ++ Sbjct: 358 IKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVFGEDPHGLS 413 Query: 459 -RENGKFS 465 R G++S Sbjct: 414 PRTEGEWS 421 >gi|268322725|emb|CAX37460.1| Pseudogene of Type I restriction enzyme mprotein (N-terminal part) [Mycoplasma hominis ATCC 23114] Length = 388 Score = 212 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 90/421 (21%), Positives = 154/421 (36%), Gaps = 65/421 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--PTRSAVREK 58 M L IW A L G DF + +L R + + + + Sbjct: 1 MAINNQERDELHKKIWDIANRLRGSIDGWDFKQYVLGIMFYRYISENIATYANKRQHQAG 60 Query: 59 YLAFGGSNI-DLESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 F + + D E+ + F SE ++ + + T N L + + N + Sbjct: 61 IEDFDYTTLSDEEALTGKDDLINEKGFFILPSELFINVVKNATTNNCLNETLDNIFQNIE 120 Query: 113 -------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153 +F D D +S +L E+ L I + + ++L Sbjct: 121 SSAKGQQSENDFSGLFNDVDVNSQ--KLGRSVDERNKKLAAILQEIAAMKLGNYQDNSID 178 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + YE+L+ + S + ++ TP++V L T + + + +YDP Sbjct: 179 AFGDAYEYLMSMYASNAGKSGGEYFTPQEVSELLTKIAVFNKK--------KVNRVYDPA 230 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + + +GQE+ T+ +C M + + D Sbjct: 231 CGSGSLLLQTIKVLGKENIKDG------FYGQEVNLTTYNLCRINMFLHDIGFDK----- 279 Query: 274 KNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328 NI G TL +R F +SNPP+ KWE + + + RF P L Sbjct: 280 FNIYNGDTLLSPSPEHQRKEPFDVIVSNPPYSIKWEGEDNPL-----LINDQRFSPAGIL 334 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S F++H + L G AAIV ++ G A E +IR++L+EN+ I+ Sbjct: 335 APKSKADFAFILHSLSWLATD----GVAAIVCFPGIMYRGGA---EQKIRQYLVENNFID 387 Query: 389 A 389 A Sbjct: 388 A 388 >gi|237654256|ref|YP_002890570.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp. MZ1T] gi|237625503|gb|ACR02193.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp. MZ1T] Length = 530 Score = 212 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 110/580 (18%), Positives = 201/580 (34%), Gaps = 78/580 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M+ T + + +W L D + + + L+ ++ + R + + Sbjct: 1 MSNPTAAL-DIGAKLWSLCHVLRDDGVTYHQYLSELTYLLFLKMMKETGQEERLRIWKAK 59 Query: 60 LAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 GS + ++ + L L Y + I+ + Sbjct: 60 DKKQGSPKEEQAGTRWDDLLGASAPDRLDLYK-------EMLLDYGLHGRGAVQEIYANA 112 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + K L K+ + ++ + +V + ++YE L+ R E GA + Sbjct: 113 N-----TFITKPATLSKLVTDIDRLDWY--SVDRDDLGDLYEDLLERNAGEKKSGAGQYF 165 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231 TPR ++ +++ P + + DP GT GFL A N++ Sbjct: 166 TPRHLIDSIVSVM----------KPQLGDVIQDPAAGTCGFLIAANNYLRQHNDFDSLSD 215 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG EL +TH + + ML+ +E + G TLS D Sbjct: 216 EAQRKYRHQTFHGMELVQDTHRLALMNMLLHGIEG--------GVTYGDTLSDDHKGLPP 267 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 LSNPPFG K K G L G + S+ FL H+ L+ Sbjct: 268 ATLILSNPPFGTK------------KGGGLPTRGDLTFETSNKQFAFLQHIYRALKP--- 312 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 313 -GGRAAVVLPDNVLFESNIG---ADIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 368 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 T++ K + D+ ++ G KR D + + + S+ D Sbjct: 369 RGDTDKGNTK--EVWVYDMRANMPAFG-KRTPFTRDY-------FRTPPDVPASQPRDKF 418 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + P ++ D R WR+ + + D L + Sbjct: 419 EDVFGSDPRGGPAALAARQDTGEAGR------WRRFTREQIAQRGDSLDISWLKDSGAAS 472 Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571 + + ++ A+ S + + + G DP A Sbjct: 473 TDQSRDDPSLLAGLALKELNAAVSELRSLLEELGE-DPDA 511 >gi|260221109|emb|CBA29345.1| Type I restriction enzyme StySJI M protein [Curvibacter putative symbiont of Hydra magnipapillata] Length = 484 Score = 212 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 161/464 (34%), Gaps = 66/464 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + +W + L ++ + LL ++ E S + + + + Sbjct: 3 TQDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMEHENAESGILQAHKLPDYARW 60 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127 +G + N +L L S + + + + L Sbjct: 61 PE--LTSRSGLNLLNHYRETLLKLSQ--------------SPD--RLISAIYADAQTS-L 101 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 ++ L ++ K+ GI+ + ++YE L+ + SE GA + TPR ++ Sbjct: 102 KEPRHLEQLVKSLDGIDWFSARQD--GLGDLYEGLLEKNASETKSGAGQYFTPRPLIDAI 159 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPI 239 L+ P T+ DP GT GFL A ++ D Sbjct: 160 VQLM----------QPQPGETVQDPAAGTAGFLIAADRYIKDHTDDLYNLTEKQRSFQRN 209 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 G EL T + + L+ +E D + G+TL + + H LSNP Sbjct: 210 QAFLGMELVGSTRRLALMNCLLHGMEGDDEGV----VHVGNTLGQAGAALPKCHLSLSNP 265 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG K G S+ + FL H+ L GGRAA+V Sbjct: 266 PFGT------------AKGGGGPTRDDLTFATSNKQLAFLQHIVRHLRD----GGRAAVV 309 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 L + LF G +++RR L++ + I+ LPT +F+ + T + ++ Sbjct: 310 LPDNVLFEAGVG---ADVRRDLMDKCRLHTILRLPTGIFYAQGVKTNVLFFEKV-SQAAT 365 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 G + D+ + G KR + D + Y + NGK Sbjct: 366 GSTSAVWVYDMRANAPKFG-KRTPLTDAHFADFITAYGTDPNGK 408 >gi|168232880|ref|ZP_02657938.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471895|ref|ZP_03077879.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458259|gb|EDX47098.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332905|gb|EDZ19669.1| type I restriction enzyme EcoKI M protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 529 Score = 212 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 105/591 (17%), Positives = 199/591 (33%), Gaps = 99/591 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + + Y Y L S + L+ Y + ++ K + + F Sbjct: 42 ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDKKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + + ++ N ++ + ++YE L+++ +E GA + Sbjct: 91 HNVSTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + +NPPFG + + S+ + F+ H+ L Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + + + V + + T++ + G KR + + +Y +G Sbjct: 358 TKGTVANPHQDKNCTNDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS-PLHQSFWLDILKPMM 523 R +F +V + +A WRK S ++ D L Sbjct: 414 PRAEGEWSFNAEESEVADSEENK------NTDQHQATSRWRKFSREWIRTAKSDSLDISW 467 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574 + A+S + + + EA V+A + A + G D AD Sbjct: 468 LKDKDSIDADSLPEPDVLAAEAMGELVQAL-GELDALMRELG-ADEEADKQ 516 >gi|167957101|ref|ZP_02544175.1| type I restriction-modification system, M subunit [candidate division TM7 single-cell isolate TM7c] Length = 440 Score = 212 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 83/401 (20%), Positives = 132/401 (32%), Gaps = 59/401 (14%) Query: 1 MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPT 51 M L N IWK A +L G DF +L F R + L E Sbjct: 1 MKGDNLKEQERTKLHNTIWKIANELRGSVDGWDFKAYVLGFLFYRFISENLVNYINAEER 60 Query: 52 RSAVREK-YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSD 109 ++ + Y + V FY + + NL ++ Sbjct: 61 KTGATDFSYAELSDDQAEFGRKDTVNDKGFYILPSELFENVRKRAKNDENLNETLSKIFR 120 Query: 110 NAKAIFEDF----DFSSTIARLE------------KAGLLYKICKNFSGIELHP-DTVPD 152 N + + F DF L+ + L K+ +EL + Sbjct: 121 NIEQSAKGFDSEDDFRGLFDDLDVNSNKLGPTVTRRNERLVKLMNAIGELELGKFEDNTI 180 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+L+ + + +F TP++V L + + ++ K +YDP Sbjct: 181 DAFGDAYEYLMTMYAGNAGKSGGEFFTPQEVSELLAKITVVGKTSVNK--------VYDP 232 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 G+G L + K +GQE+ T+ +C M + + + Sbjct: 233 AAGSGSLLLKFAKVL------GKDNVRQGFYGQEINITTYNLCRINMFLHDINYEK---- 282 Query: 273 SKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329 NI G TL + F +SNPP+ KW+ D + RF P L Sbjct: 283 -FNIAHGDTLKDPKHWDDEPFDAIVSNPPYSIKWDGDSNPT-----LINDPRFSPAGVLA 336 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 S + F MH+ + L G AAIV L+ G A Sbjct: 337 PRSKADLAFTMHMLSWLSES----GTAAIVEFPGALYRGGA 373 >gi|84390142|ref|ZP_00991404.1| type I restriction-modification system, M subunit [Vibrio splendidus 12B01] gi|84376796|gb|EAP93671.1| type I restriction-modification system, M subunit [Vibrio splendidus 12B01] Length = 524 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 91/470 (19%), Positives = 162/470 (34%), Gaps = 73/470 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63 + + +WK + L + + L ++ T A Sbjct: 2 NNNEIVQKLWKLCDVLRD--DGITYTDYVTELVLLLFIKM------ETEQAEAGITKHVL 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + G Y+ L LG + + L + I ++ Sbjct: 54 PEGCRWQDITTQTGIKQYDHYRQMLLDLGKHH--DPLLAAI---------------YAGA 96 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 L++ L ++ ++ + + ++YE L+ + +E GA + TPR + Sbjct: 97 QTSLKEPKHLSQLVTRIDELDWFSAR--EDGLGDLYEGLLEKNANETKSGAGQYFTPRPL 154 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHK 235 + L+ +P T+ DP GT GFL A + D Sbjct: 155 IDAIVKLM----------NPQAGETIQDPAAGTAGFLIAAHEFIKDKTDDLYDLGEKEQG 204 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G EL P T + + L+ +E + I QG+TLS + + + Sbjct: 205 FQKSKAYNGMELVPSTRRLALMNCLLHGIEGEGEGA----IHQGNTLSGEGAQLPKVNLI 260 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 LSNPPFG K G + S+ + FL H+ L+ GGR Sbjct: 261 LSNPPFGTS------------KGGGGPTRDDLTYETSNKQLAFLQHIYRHLKP----GGR 304 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+VL + LF G ++R L+ + I+ LPT +F+ + T + Sbjct: 305 AAVVLPDNVLFEAGVGQ---KVRADLMNKCNLHTILRLPTGIFYAQGVKTNVLFFQKGTP 361 Query: 416 EERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGK 463 E + + +T ++ N KRR + + ++ Y S NG+ Sbjct: 362 ENKDQEENCTTSTWVYDMRTNMNTFGKRRPLTERHFAPFIEAYGSDANGQ 411 >gi|161617830|ref|YP_001591795.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161367194|gb|ABX70962.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 529 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 86/488 (17%), Positives = 167/488 (34%), Gaps = 97/488 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + + Y Y L S + L+ Y + ++ K + + F Sbjct: 42 ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDKKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + + ++ N ++ + ++YE L+++ +E GA + Sbjct: 91 HNVSTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + +NPPFG + + S+ + F+ H+ L Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + + V + + T++ + G KR + + +Y Sbjct: 358 TKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413 Query: 459 -RENGKFS 465 R G++S Sbjct: 414 PRTEGEWS 421 >gi|295107442|emb|CBL04985.1| Type I restriction-modification system methyltransferase subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 493 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 111/547 (20%), Positives = 202/547 (36%), Gaps = 74/547 (13%) Query: 7 SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 SA+++ IW A L ++D+ + + L+ + +P + Sbjct: 2 SASTINQKIWNMATVLYNDGVSNSDYLEQLTYLLFLKMADEYSKPPYNR-----PTGLPE 56 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + E +G ++T + L LG+ + I F+ Sbjct: 57 DCRWECLAGKSGAELFDTYKKMLDKLGAQG-------------GMLQEI-----FAGAQN 98 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 ++ +L ++ + + V +IYE L++R + GA + TPR +++ Sbjct: 99 KMSSPAILARVIQMIGTETWT--AMSQDVKGDIYEGLLQRIAEDTKSGAGQYFTPRPLIN 156 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV 241 + P +T+ DP CG+GGFL A +++ + K Sbjct: 157 TIIKCV----------QPKPEKTVCDPCCGSGGFLLAAKSYIEEAYQLDADQKKFLKNEA 206 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 HG E+ P T +C+ + + + + I + L D G RF Y L+NPPF Sbjct: 207 FHGWEIVPATRRLCLMNLFLHNIGD---FNDVPPITRNDALLSD--PGMRFDYVLTNPPF 261 Query: 302 GKKW-----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 GKK + + E + F S+ + F+ H+ L+ GG A Sbjct: 262 GKKATLKAAAGEDGELVDEELSYSRQDFWAT---SSNKQLNFVQHIHTILKT----GGTA 314 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+V+ + LF G A GE+ +RR LLE + I+ LPT +F++ + + NR Sbjct: 315 AVVVPDNVLFEGGA--GET-VRRKLLETANLHTILRLPTGIFYKPGVKANVIFFENRPGS 371 Query: 417 E--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV----SRENGKFSRMLDY 470 E + +V + + + + + K+ + + LD Y + +S + Sbjct: 372 ERVQTREVWIYD----YRTNVHHTLKQHPMTETDLTDFLDCYKPGHIDERDETYSED-NN 426 Query: 471 RTFGYRRIKVLRPL-RMSFILDKTGLARLEA--DITWRKLSPLHQSFWLDILKPMMQQIY 527 +RR + + R LD T + E +I L I + Q Sbjct: 427 PDGRWRRFTIDEIMGRDKLSLDITWIKTGEDISEIALSDLLASIHEKSDAIADAVEQLEA 486 Query: 528 PYGWAES 534 G E Sbjct: 487 LLGDIED 493 >gi|730885|sp|P07989|T1M_SALPO RecName: Full=Type I restriction enzyme StySPI M protein; Short=M.StySPI gi|154132|gb|AAA27143.1| restriction-modification enzyme type I M subunit [Salmonella enterica] Length = 529 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 86/488 (17%), Positives = 165/488 (33%), Gaps = 97/488 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + + Y Y L S + L+ Y + + K + + F Sbjct: 42 ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRNLLVHLGADEKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + L ++ + ++ + ++YE L+++ +E GA + Sbjct: 91 QNVNTTITQPKQLTELVSSMDSLDWYNGDHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDAQDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + +NPPFG + + S+ + F+ H+ L Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLPP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAAVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + + V + + T++ + G KR + + +Y Sbjct: 358 TKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413 Query: 459 -RENGKFS 465 R G++S Sbjct: 414 PRTEGEWS 421 >gi|21227771|ref|NP_633693.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] gi|20906175|gb|AAM31365.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] Length = 498 Score = 210 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 96/493 (19%), Positives = 167/493 (33%), Gaps = 72/493 (14%) Query: 4 FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +S+ + +W L G + D+ + + L+ Sbjct: 1 MSENTSSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKM------------------- 41 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDF 120 + + G EY+ L Y + + + Sbjct: 42 -AEEYRKPPYNRNIG----IPEEYTWDRLKQQRGAELDTHYRELLEELGQKPGMLGQIFL 96 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 S ++ +LYKI V IYE L+++ + GA + TP Sbjct: 97 KSQ-NKVSDPAMLYKIIDMIDKESWVMMGVD--TKGEIYEGLLQKNAEDTKSGAGQYFTP 153 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236 R ++ + L P ++T+ DP CGTGGF A + + + Sbjct: 154 RPLIKVMVQCL----------QPEPMKTIGDPCCGTGGFFLAAYDFLTSHHRLDRDQSRF 203 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G E+ T + + M + + D I L D G R+ Y L Sbjct: 204 LKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYDYIL 258 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFGKK E E + E R S+ + FL H+ L+ GG Sbjct: 259 TNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWTT-TSNKQLNFLQHIHTILKT----GG 313 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + LF G AG IR+ LLE + I+ LPT +F+ + + + Sbjct: 314 QAAVVLPDNVLFEGGAG---ETIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFEAKP 370 Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SREN--GKFS 465 + +V + + + + + K+ + + Y +R+ + S Sbjct: 371 ASKEPWTKEVWIYD----YRTNVHHTLKKNPLKYSDLEDFIRCYNPENRFNRKETWSEES 426 Query: 466 RMLDYRTFGYRRI 478 +R F Y I Sbjct: 427 PEGRFRKFSYDEI 439 >gi|303239473|ref|ZP_07326000.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio cellulolyticus CD2] gi|302593036|gb|EFL62757.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio cellulolyticus CD2] Length = 494 Score = 210 bits (536), Expect = 5e-52, Method: Composition-based stats. Identities = 115/536 (21%), Positives = 195/536 (36%), Gaps = 71/536 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E + +S+ + IW L D +G + T L L+ A E ++ Sbjct: 1 MSEN--NTSSVVSKIWSFCNTLRDDGVG--YGDYLEQLTYLLFLKMAYEFSKPPYNRTLP 56 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 N D SL+ + + + N K I F Sbjct: 57 IPEKYNWD------------------SLTEVKGAELEVHYNELLRELGKN-KGILGQI-F 96 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + +++ L K+ + T+ + IYE L+ + +V GA + TP Sbjct: 97 TKSQNKIQDPAKLSKLIDMIDKEQW--STMGADIKGQIYEGLLEKNAEDVKSGAGQYFTP 154 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R ++ L P ++T+ DP CGTGGFL A +++ S K Sbjct: 155 RPLIKGIVKCL----------RPEPMKTISDPACGTGGFLLAAYDYIVQNYSLDKEQKHF 204 Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G E+ T + + M + + + I +L D TG R Y L Sbjct: 205 LKYKTFFGNEIVANTRRLALMNMFLHNIGDIDSDNF---ISSADSLIAD--TGLRVDYVL 259 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFGKK E E + + R S+ + F+ H+ L+ G Sbjct: 260 TNPPFGKKSSMTFTNEEGEQETDDLTYNRQDFWAT-TSNKQLNFVQHIRTLLKSD----G 314 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G AG +R+ LLE + I+ LPT +F++ + + N+ Sbjct: 315 RAAVVLPDNVLFEGGAG---ETVRKKLLETTELHTILRLPTGIFYKPGVKANVIFFDNKP 371 Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470 + +V + + + + + K+ + D + + Y +R + + + D Sbjct: 372 ASKDPWTKEVWIYD----FRTNIHFTLKKNPLKVDDLDEFIKCYNPENRHDREETWKPDT 427 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 G R R S+ D + DITW K L L + I Sbjct: 428 NPEGRWR-------RFSYE-DIVNRDKTSLDITWIKDKSLADLDNLPDPDELANDI 475 >gi|15669405|ref|NP_248215.1| type I restriction-modification enzyme 1 subunit M [Methanocaldococcus jannaschii DSM 2661] gi|2496162|sp|Q58617|Y1220_METJA RecName: Full=Uncharacterized adenine-specific methylase MJ1220 gi|1592326|gb|AAB99225.1| type I restriction-modification enzyme 1, M subunit [Methanocaldococcus jannaschii DSM 2661] Length = 578 Score = 210 bits (536), Expect = 5e-52, Method: Composition-based stats. Identities = 93/536 (17%), Positives = 183/536 (34%), Gaps = 64/536 (11%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L + + A+ + + V+L F + + +++++ + Sbjct: 83 SKDKLIGLLKQGADLIRTQVD---YK-VLLLFLFFKAISDKYLLKVEELKKEFEDLDEED 138 Query: 67 I------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 I ++ V G Y + + N L + + + E Sbjct: 139 IYVLANEEILELYDVEGKKLYV---WHEVANNPEDFINALNKIVEMNKEKLSGLDELIK- 194 Query: 121 SSTIARLEKAG---LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + + L + ++ + FS + + ++ + YE + F ++ + Sbjct: 195 RTGLPTLFENENRHIVQHLINLFSRADFSEASYD--ILGDAYEWTLNYFAPTKAKE-GEV 251 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP +V L L+ DD + DP CG+G L + Sbjct: 252 YTPIEVSKLIAHLVEPKDDEVI----------LDPACGSGSMLIEQYRF-------AGSN 294 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------- 290 P +V GQE T + ++ + + G +L F Sbjct: 295 PNIVLVGQERNDVTAVLAKLNFILHGINL-----KDAKVFIGDSLLNPKFESFIXEVKGT 349 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + ++NPP+ + + E G P + ++ + E Sbjct: 350 GKADKVVANPPWNQDGYDENTLKVNEKYKDIY---MYGFPNKNSADWAWVQLINYYTEK- 405 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 +A IVL S LF G E IR+ +++DLIEA+V LP LF+ + I Sbjct: 406 -----KAGIVLDSGALFRGGK---EKTIRKRFVDDDLIEAVVLLPEKLFYNCPAPGIILI 457 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468 L+ K EER+GK+ INA++ + KK ++D+ +I Y ++ F +++ Sbjct: 458 LNKNKPEERKGKILFINASNEYIKHPEV-KKLNKLSDENIEKIAKAYKEFKDVDGFCKVV 516 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 D + L +S I + + E KL + + + + + Sbjct: 517 DIEEIRKNDYNLNVSLYISPIEEDEDVDLGEVYEELNKLHNEYLEKFEVVKGYLEE 572 >gi|323697974|ref|ZP_08109886.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfovibrio sp. ND132] gi|323457906|gb|EGB13771.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfovibrio desulfuricans ND132] Length = 478 Score = 210 bits (535), Expect = 7e-52, Method: Composition-based stats. Identities = 93/466 (19%), Positives = 169/466 (36%), Gaps = 78/466 (16%) Query: 6 GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + +WK + LWGD + + + L+ E + E Y Sbjct: 2 TTTQDIVQKLWKLCDILWGDGVTYHQYVNELTYLLFLKMAEET--EKEDQLPEAYHWKKL 59 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 +D V +FY L T G S + I +++ Sbjct: 60 VEMD-----GVEQLTFYKKLLIDLGTQG---------------SKLVQDI-----YANAS 94 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 + +++ L K+ + ++ + + ++YE L+ + +E GA + TPR ++ Sbjct: 95 SFIQQPKNLRKLVDSLDELDWYSAREE--GLGDLYEGLLEKNATESKRGAGQYFTPRRLI 152 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKI 236 + L+ P + DP GTGGFL +A ++ + + Sbjct: 153 EVMVELM----------QPQAGEVIQDPAAGTGGFLINADAYIRERTGNLYNLPESKQNF 202 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL + H +C+ +++ +E+ I G TL + + L Sbjct: 203 QRRQAFQGMELVQDVHRLCLMNLMLHGIETP--------IALGDTLGPQGASMPKADVIL 254 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG G R ++ + FL H+ L+ GGRA Sbjct: 255 TNPPFGT------------ATGGGHTRREDFTFPTNNRQLAFLQHVYRGLKP----GGRA 298 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G +IR L++ + I+ LPT +F+ + T + +T+ Sbjct: 299 AVVLPDNVLFEDNTG---RKIRTDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFQRGETD 355 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + K + DL T++ + G KR + Y NG Sbjct: 356 KGNTKA--VWVYDLRTNMPSFG-KRTPLTRAHFSAFEQAYGDDPNG 398 >gi|124010329|ref|ZP_01694979.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC 23134] gi|123983603|gb|EAY24056.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC 23134] Length = 496 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 94/465 (20%), Positives = 173/465 (37%), Gaps = 64/465 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63 + AS+ + +W A+ L D +G I L+ A Sbjct: 2 TEASIVSKVWNFADVLRDDGVG--YGDYLEQITYLLFLKM-----------------AEE 42 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---KAIFEDFDF 120 +D + G N + S L S LE++ + K I F Sbjct: 43 SGRVDFPRLKDINGNELPNGEQCSWQNLRSKK-GAALEAFYTQMLRSLGSEKGILGQI-F 100 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +++ L KI + + ++ + IYE L+ + S+V GA + TP Sbjct: 101 TKAQNKVQDPAKLLKIIDMINREDW--SSMGADLKGKIYEGLLEKNASDVKSGAGQYFTP 158 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKI 236 R ++ A + P +T+ DP+CGTGGF A +++ D K Sbjct: 159 RALIQAMVACV----------QPQPNKTIVDPSCGTGGFFLAAYDYIVDNHELDRDEKKF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G E+ T +C+ M + + D + I L +R Y L Sbjct: 209 LKKETFYGNEIVASTRRMCLMNMFLHNI---GEIDGASLISSADALIAQG--SQRHDYVL 263 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFGKK + E + + R S+ + L H+ + L++ G Sbjct: 264 ANPPFGKKSSMTITNEDGEQERQDLSYNRQDFWAT-TSNKQLNVLQHIKSLLKV----NG 318 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 AA+VL + LF G AG +R+ LL+ + I+ LPT +F+ + + N+ Sbjct: 319 EAAVVLPDNVLFEGGAG---ETVRKELLKTTELHTILRLPTGIFYANGVKANVLFFDNKA 375 Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + +V + + + + + +++ + + + +Y Sbjct: 376 AAKTPWTQEVWVYD----YRTNVHHTLRKKPLRLADLQAFVKLYN 416 >gi|206889888|ref|YP_002249480.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741826|gb|ACI20883.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 485 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 99/524 (18%), Positives = 188/524 (35%), Gaps = 68/524 (12%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGG 64 ++++ +W L D +G + L L+ + E T+ + + Sbjct: 5 SSTIVQRLWNYCNVLRDDGVS--YGDYVEQLTYLLFLKMAD---EQTKPPFNK--PSIIP 57 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 +D +S ++ G S + L +LG K + F Sbjct: 58 KELDWQSLIERDGDSLEVHYRHILESLGKE-----------------KGMLGVI-FRKAQ 99 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +++ L ++ + + + + IYE L+++ +V GA + TPR ++ Sbjct: 100 NKIQDPAKLKRLIELINNETWT--GLDIDIKGEIYEGLLQKNAEDVKGGAGQYFTPRPLI 157 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---- 240 + SP +T++DP CGTGGFL A +++ K Sbjct: 158 KAIVECI----------SPEPGQTIHDPACGTGGFLLAAHEYISKNYRLDKEQKRFLKYN 207 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 G+++ +CV + + + + I G +L D TG+R+ L+NPP Sbjct: 208 TFSGRDIVDSVVRLCVMNLYLHGIGGEESP-----IATGDSLISD--TGERYDIILTNPP 260 Query: 301 FGKKWEKD--KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 FGKK + + ++ R S+ + FL ++ G+ A+ Sbjct: 261 FGKKSSITIVNGEGKADRESLTYERRDFWAT-TSNKQLNFLQ----HVKTITKINGKVAM 315 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V+ + LF G AG IRR LL + ++ LPT +F+ + + RK Sbjct: 316 VVPDNVLFEGGAG---ETIRRKLLAECDVHTLLRLPTGIFYAQGVKANVLFFD-RKPASE 371 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTF 473 + + + DL T++ + K + + + Y +RE + R Y Sbjct: 372 KPWTEKLWIYDLRTNM-HFTLKTNPLRYEHLEDFIRCYNPENRRNREETERFRAFTYEEL 430 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R L + + DI R+++ QS Sbjct: 431 IQRDKVSLDIFWLKDESLEDSENLPSPDILAREITENLQSALEQ 474 >gi|254414884|ref|ZP_05028648.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196178373|gb|EDX73373.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 484 Score = 209 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 96/465 (20%), Positives = 167/465 (35%), Gaps = 80/465 (17%) Query: 5 TGSAASLANFIWKNAEDLWGD-FKHTDFGKVI-LP-FTLLRRLECALEPTRSAVREKYLA 61 T + + +W L D + + VI L L+ + E+ L Sbjct: 3 TATH-DIVAKLWNLCNILKDDGVTYHQY--VIELTYLLFLKM-------AKETSTERQLP 52 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-SDNAKAIFEDFDF 120 G DLE + FY L SY+ S S K I F Sbjct: 53 EGYRWDDLEGQTEKP-LEFY----------------KGLLSYLGSHGSTLVKEI-----F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + ++K L + ++ + + +IYE L+ + +E GA + TP Sbjct: 91 TDAHSSIKKDTTLSTLVTKIDKLDWYSAKRE--GLGDIYEGLLEKNANEKKAGAGQYFTP 148 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSH 233 R ++ ++ D + DP GTGGFL A ++ + Sbjct: 149 RPLIDSMVRVMRPTLDDII----------QDPAAGTGGFLIAANRYIREHSNPNSWTNKQ 198 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +G E +TH + + +++ L+S P+ IQ G TLS D Sbjct: 199 NNKYHGNTFYGMEHVQDTHRLALMNLILHGLDSAPQG---AGIQYGDTLSPDGQALPPAT 255 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFG K + + + S+ FL H+ L+ G Sbjct: 256 LILTNPPFGSK-KGGGLPNRSDFEF-----------PTSNKQFCFLQHIYLGLKP----G 299 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRAA V + LF G +IR L++ + I+ LP+ +F+ + T + + Sbjct: 300 GRAAAVFPDNVLFESNVG---RQIRTALMDKCNLHTILRLPSGIFYAQGVKTNVLFFTRG 356 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 K ++ G + + DL T+ G+ R + + + + Sbjct: 357 K--KQTGNTKEVWVYDLRTNTPQFGR-RTSLRREYFAEFEAFFGD 398 >gi|256810723|ref|YP_003128092.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanocaldococcus fervens AG86] gi|256793923|gb|ACV24592.1| Site-specific DNA-methyltransferase (adenine-specific) [Methanocaldococcus fervens AG86] Length = 577 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 97/549 (17%), Positives = 190/549 (34%), Gaps = 79/549 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L + + + A+ + + V+L F + + + ++E++ + Sbjct: 83 SKDKLISLLKQGADLIRTHVD---YK-VLLLFLFFKAISDKYLLKVAELKEEFEDLNEED 138 Query: 67 I------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-------- 112 I ++ V G Y N NN E +I + + + Sbjct: 139 IYVLANEEILELYDVEGKKLYV----------WQNVANNPEDFITALNKIVEMNREKLSG 188 Query: 113 --AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + + + E ++ + FS + + ++ + YE + F Sbjct: 189 LDELIKRTGLPTLFEN-ENRQIVQHLINLFSRADFSEASYD--ILGDAYEWTLNYFAPTK 245 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 ++ + TP +V L L+ DD + DP CG+G L + Sbjct: 246 AKE-GEVYTPIEVSKLIAHLVEPRDDEVI----------LDPACGSGSMLIEQYRF---- 290 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 P +V GQE T + ++ + + G +L F Sbjct: 291 ---AGSNPNIVLVGQERNDVTAVLAKLNFILHGINL-----KDAKVFIGDSLLNPKFESF 342 Query: 290 -------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + ++NPP+ + + E N G P + ++ + Sbjct: 343 IKEVKKIDKADKVVANPPWNQDGYDEDTLKVNEKYNYIY---KYGFPNKNSADWAWVQLI 399 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 E +A IVL S LF E IR+ +++DLIEA+V LP LF+ Sbjct: 400 NYYTEK------KAGIVLDSGALFRSGR---EKTIRKKFVDDDLIEAVVLLPEKLFYNCP 450 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + IL+ K EER+GK+ INA++ + KK ++D+ +I Y ++ Sbjct: 451 APGIILILNKNKPEERKGKILFINASNEYVKHPEV-KKLNKLSDENIEKIAKAYKEFKDV 509 Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 F +++D + L + I + + E KL + + +++K Sbjct: 510 DGFCKVVDIEEIKNNDYNLNVSLYVFPIEEDEDIDLNEVYDELNKLHNEYLEKF-EVVKG 568 Query: 522 MMQQIYPYG 530 +++I Sbjct: 569 YLEEIKEIK 577 >gi|313664976|ref|YP_004046847.1| type I restriction-modification system, M subunit [Mycoplasma leachii PG50] gi|312949714|gb|ADR24310.1| putative type I restriction-modification system, M subunit [Mycoplasma leachii PG50] Length = 355 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 151/370 (40%), Gaps = 55/370 (14%) Query: 120 FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F ++ +L + + + I ++ IYE+LI +F S + A Sbjct: 22 FEKSLDKLGSNSKEQQETINNLLDTMNKIPTVKQDYD--ILGFIYEYLIAQFASSAGKKA 79 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP +V L + ++ I ++YDPT G+G L + + Sbjct: 80 GEFYTPHEVSDLMSKIVAHHLKNRS------IISVYDPTSGSGSLLLNIGDEFKKYNKGS 133 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGK-- 290 + + QEL+ ET + +++R + ++++G TL +D F + Sbjct: 134 SP---VSYYAQELKTETFNLTRMNLIMRNINPSEI-----HVRRGDTLEQDWPIFENEDL 185 Query: 291 ------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLA 343 +SNPP+ + W + K+ R+ G+ + FL+H Sbjct: 186 STYKRLTVDAVVSNPPYSQSWNSE--------KHTNDPRYVEYGIAPKTKADYAFLLHDL 237 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 ++ G AIVL LF G E +IR+ L+E I+ I+ LP+++FF T I Sbjct: 238 YHIDPE----GIMAIVLPHGVLFRGN---SEKQIRQKLIEKGQIDTIIGLPSNMFFGTGI 290 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 T + IL +K + ++A+ L+ K + Q ++I D+ +R + Sbjct: 291 PTIIMILKKQKP---INDILFVDASQLYIKE----GKNNKFSQSQIKKIADVVNNRIEVE 343 Query: 464 -FSRMLDYRT 472 FSR++ + Sbjct: 344 KFSRIVKFDE 353 >gi|73670715|ref|YP_306730.1| type I restriction-modification system specificity subunit [Methanosarcina barkeri str. Fusaro] gi|72397877|gb|AAZ72150.1| type I restriction-modification system specificity subunit [Methanosarcina barkeri str. Fusaro] Length = 498 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 91/465 (19%), Positives = 158/465 (33%), Gaps = 65/465 (13%) Query: 4 FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +S+ + +W L G + D+ + + L+ Sbjct: 1 MSENTSSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKM------------------- 41 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDF 120 + + G EY+ L Y + + + F Sbjct: 42 -AEEFSKPPYNRNIG----IPEEYTWDKLKQQRGAELDTRYRELLEELGQKPGMLGQI-F 95 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ +LYKI V IYE L+++ + GA + TP Sbjct: 96 LKAQNKVSDPAMLYKIIDMIDKESWVMMGVD--TKGEIYEGLLQKNAEDTKSGAGQYFTP 153 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236 R ++ + L PG ++T+ DP CGTGGF A + + + Sbjct: 154 RPLIKVMVQCL----------QPGPLKTIGDPCCGTGGFFLAAYDFLTSHYRLDKEQSRF 203 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G E+ T + + M + + D I L D G R+ Y L Sbjct: 204 LKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYDYIL 258 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFGKK E E + E R S+ + FL H+ L+ GG Sbjct: 259 TNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWTT-TSNKQLNFLQHIHTILKT----GG 313 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + LF G AG IR+ LLE + I+ LPT +F+ + + + Sbjct: 314 QAAVVLPDNVLFEGGAG---ETIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFEAKT 370 Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + +V + + + + + K+ + + Y Sbjct: 371 ASKEPWTKEVWIYD----YRTNVHHTLKKNPMKFSDLEDFIKCYN 411 >gi|227500725|ref|ZP_03930774.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227217183|gb|EEI82532.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 265 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 6/219 (2%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + N + A L G ++ + VI+P ++RR ECALE T+ V E Y Sbjct: 26 SKEVNLVLSIANSLRGAYEAERYKDVIIPMVIIRRFECALEETKDKVVELYK--KDPKKP 83 Query: 69 LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + + +GY FYNTSE++L L S N +N E+Y+ FS N K I + D + I + Sbjct: 84 AIFYERESGYPFYNTSEFNLKNLLNDSDNIASNFENYVNGFSGNVKGILSNLDIYNQIKK 143 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L+K+ LY I K FS ++L P T+ + M ++E +IRR+ + A D TPR+V+ L Sbjct: 144 LDKSNRLYIIIKKFSEVDLDPRTIDNHKMGYLFEDIIRRYSE--NVEAGDHYTPREVIRL 201 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 +LL G + T+ D CG + N Sbjct: 202 LVDVLLAEGCDDLLTGDGKVCTVLDAACGFRVIIVIEAN 240 >gi|20090959|ref|NP_617034.1| site-specific DNA-methyltransferase (adenine-specific), subunit M [Methanosarcina acetivorans C2A] gi|19916043|gb|AAM05514.1| site-specific DNA-methyltransferase (adenine-specific), subunit M [Methanosarcina acetivorans C2A] Length = 498 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 88/465 (18%), Positives = 157/465 (33%), Gaps = 65/465 (13%) Query: 4 FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +S+ + +W L G + D+ + + L+ Sbjct: 1 MSENTSSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKM------------------- 41 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDF 120 + + G +Y+ L Y + + + F Sbjct: 42 -AEEYRKPPYNRDIG----IPEKYTWDNLKQQRGAELDTRYKELLEELGQKPGMLGQI-F 95 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ +LYKI V IYE L+++ + GA + TP Sbjct: 96 LKAQNKVSDPAMLYKIIDMIDKESWVMMGVD--TKGEIYEGLLQKNAEDTKSGAGQYFTP 153 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236 R ++ + L P ++T+ DP CGTGGF A + + + Sbjct: 154 RPLIKVMVQCL----------RPEPMKTIGDPCCGTGGFFLAAYDFLTSNYRLDREQSRF 203 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G E+ T + + M + + D I L D G R+ Y L Sbjct: 204 LKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYDYIL 258 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFGKK E E + + R S+ + FL H+ L+ GG Sbjct: 259 TNPPFGKKSSMTFTNEEGEQEKEDLTYNRQDFWT-STSNKQLNFLQHIHTILKT----GG 313 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + LF G AG IR+ LLE + I+ LPT +F+ + + + Sbjct: 314 QAAVVLPDNVLFEGGAG---ETIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFEAKP 370 Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + +V + + + + + K+ + + Y Sbjct: 371 ASKNPWTKEVWIYD----YRTNVHHTLKKNPMKYSDLEDFIKCYN 411 >gi|289667521|ref|ZP_06488596.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 514 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 100/566 (17%), Positives = 188/566 (33%), Gaps = 77/566 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL V+ +Y S Sbjct: 2 THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLF-----------VKMEYEQVQNSP 48 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + + + L + N N+ + + ++ + + R Sbjct: 49 NFEHKLPEGSRWP-------DLKSKSGRNLLNHYQQMLLDLGQSSDPMIAAIYADAQ-TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L + G++ + ++YE L+++ +E GA + TPR ++ Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236 + P + + DP GT GFL A ++ Sbjct: 159 IIRCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPGVTAKKRSF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ + + + I+ G++L + L Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMN----GEGAGPIRLGNSLGAAGRDLPPANIIL 264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG K G K S+ + FL H+ L+ GGRA Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 308 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G ++IRR L++ + ++ LPT +F+ + T + Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAT 365 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 R AT ++ N KR D Y + NG S D G Sbjct: 366 NPRQDTSCTQATWVYDLRSNMPSFGKRTPFGPTHLTPFEDAYGTDPNG-ASPRTDQGEEG 424 Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 R R L +S++ D + ++ L+ + + L+ + + Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483 Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553 G + +++ E L+V +S Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSS 509 >gi|147920299|ref|YP_685930.1| type I restriction modification system, methyltransferase subunit [uncultured methanogenic archaeon RC-I] gi|110621326|emb|CAJ36604.1| type I restriction modification system, methyltransferase subunit [uncultured methanogenic archaeon RC-I] Length = 485 Score = 208 bits (530), Expect = 3e-51, Method: Composition-based stats. Identities = 96/539 (17%), Positives = 182/539 (33%), Gaps = 73/539 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYL 60 ++++ +W L D +G + L L+ + E ++ + Sbjct: 1 MATESSTIVQRLWNYCNVLRDDGVS--YGDYVEQLTYMLFLKMAD---EQSKPPFNK--P 53 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + + D S + G +L LG K + F Sbjct: 54 STIPAGYDWSSLLSKDGVELETHYIDTLKKLGQE-----------------KGMLGVI-F 95 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +++ L ++ +G + V IYE L+++ + GA + TP Sbjct: 96 RKSQNKIQDPAKLKRLIDLINGETWT--GLDIDVKGEIYEGLLQKNAEDTKSGAGQYFTP 153 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R ++ ++ P T+ DP CGTGGFL A ++++ + Sbjct: 154 RPLIKAMVDVI----------RPQPGETICDPACGTGGFLLAAHDYISKKYQLDRDQKKF 203 Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G+++ +CV + + + D G L D G RF L Sbjct: 204 LKLNTFKGKDIVDNVARLCVMNLYLHGIGGDESPVDV-----GDALVAD--PGDRFDIIL 256 Query: 297 SNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 +NPPFGKK ++E E F S+ + FL H+ L+ Sbjct: 257 TNPPFGKKSSITIVNGDGKGDREALVYERQDFWATT---SNKQLNFLQHVKTLLK----I 309 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+ AIV+ + LF G AG +R LL + ++ LPT +F+ + + Sbjct: 310 NGKCAIVVPDNVLFEGGAG---ETVRHKLLMECDVHTLLRLPTGIFYAQGVKANVLFFDR 366 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRM 467 R + + Q + DL T++ + K + D + + Y R+ + + Sbjct: 367 R-PASKDPQTQKLWIYDLRTNM-HFTLKTNPLKYDDLQDFIQCYNPENRHERKETERFKA 424 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 Y R L + L A + + L+ + + +++ Sbjct: 425 FTYDQLMQRDKVSLDIFWLKDE-SLEDSENLPAPEVIAREIVENLEAALEQFRGIEEEL 482 >gi|289664156|ref|ZP_06485737.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 514 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 103/566 (18%), Positives = 190/566 (33%), Gaps = 77/566 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL L +E + + Sbjct: 2 THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPEG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + N L LG ++ + IA+ +A+ R Sbjct: 58 SRWPDLKSKSGLNLLNHYRQMLLNLGKSS-----DPMIAAIYADAQ------------TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L + G++ + ++YE L+++ +E GA + TPR ++ Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236 + P + + DP GT GFL A ++ Sbjct: 159 IIHCV----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPGVTAKKRSF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ + + + I+ G++L + L Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMN----GEGAGPIRLGNSLGIAGRDLPPANIIL 264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG K G K S+ + FL H+ L+ GGRA Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 308 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G ++IRR L++ + ++ LPT +F+ + T + Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSAA 365 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 R AT ++ N KR + D Y + NG S D G Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEDAYGTDPNG-ASPRTDEGEEG 424 Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 R R L +S++ D + ++ L+ + + L+ + + Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483 Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553 G + +++ E L+V + Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509 >gi|88810391|ref|ZP_01125648.1| type I restriction-modification system specificity subunit [Nitrococcus mobilis Nb-231] gi|88792021|gb|EAR23131.1| type I restriction-modification system specificity subunit [Nitrococcus mobilis Nb-231] Length = 481 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 100/483 (20%), Positives = 164/483 (33%), Gaps = 71/483 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHT-DFGKVI---LPFTLLRRLECALEPTRSAVREKYLAF 62 S L +W A L +G I L+ + R + + A Sbjct: 2 SNEQLVAKVWNYAHVLR---DQGISYGDYIEQITYLLFLKM-----DQEREDLLGETSAI 53 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 G ++L LG + + F Sbjct: 54 -PPLWSWAQLANKDGDELELQYRHTLEQLGRED-----------------GLIGTI-FRK 94 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +L L ++ + V IYE L+ R +EV GA + TPR Sbjct: 95 AQNKLSDPAKLKRVVSLIDKEGPWIELKV-DVKGEIYEGLLERNAAEVKSGAGQYFTPRP 153 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI---PPI 239 V+ + P + T+ DP CGTGGFL A +H+ + Sbjct: 154 VIEAIVKCV----------DPKIGETVCDPACGTGGFLLAAYDHLKTQTQDREKLRALRH 203 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 HG ++ E +C + + + +D ++QG L+ D G+RF L+NP Sbjct: 204 TAFHGLDIVDEVVRLCAMNLYLHGIGNDSSP-----VEQGDALASDG--GERFKVVLTNP 256 Query: 300 PFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 PFGKK + +V E ++ E F + FL H+ L GR Sbjct: 257 PFGKKSSYKVVGEDGSVTTEREHYEREDFKFTTT---NKQFNFLQHIMTIL----EANGR 309 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A +VL + LF +GE IR+ LL+ ++ LPT +++ + + R Sbjct: 310 AGVVLPDNVLFEAG-RAGEG-IRKRLLQGFNFHTLLRLPTGIWYSPGVKANVLFFDKRPA 367 Query: 416 EERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +VQ A ++ N K K + + + + Y +R+ + R Y Sbjct: 368 SR---EVQ-TKALWVYDYRTNVHKTQKTKRLTNADLEDFVRCYQARQETERFRRFTYEEL 423 Query: 474 GYR 476 R Sbjct: 424 AQR 426 >gi|307287470|ref|ZP_07567522.1| N-6 DNA Methylase [Enterococcus faecalis TX0109] gi|306501516|gb|EFM70815.1| N-6 DNA Methylase [Enterococcus faecalis TX0109] Length = 343 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 40/356 (11%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP V + +L + +++DPT G+G + + N++ Sbjct: 1 AGKKAGEFYTPHMVSDMMAQILT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT- 53 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 P + HGQEL T+ + +++ ++++ N++ G TL+KD T Sbjct: 54 ------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTD 102 Query: 290 KRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + + + + NPP+ W D ++ R+G L S FL+H L+ Sbjct: 103 EPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLK 157 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G AIVL LF G A G IR+ LLE+ I A++ +P +LFF T+I T + Sbjct: 158 ET----GTMAIVLPHGVLFRGAAEGG---IRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 210 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 +L + V I+A+ + GK + ++++ ++IL+ Y R+ + ++ Sbjct: 211 IVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKGVEKYAH 263 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + + + P + ++ + + +K+ Q ++L+ + Sbjct: 264 LATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAL 319 >gi|282907755|ref|ZP_06315596.1| type I restriction modification system modification protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328366|gb|EFB58638.1| type I restriction modification system modification protein [Staphylococcus aureus subsp. aureus WW2703/97] Length = 270 Score = 207 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 43/294 (14%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 1 GEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG---------- 42 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 K + GQE T+ + ML+ + R + +I+ TL F G F Sbjct: 43 KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDA 97 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ KW D E +G L S F+ H+ + L+ G Sbjct: 98 VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 148 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413 A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + + Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 K ++ V I+A++ + GK + ++D Q +I+D Y ++ K+S Sbjct: 204 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKKTIDKYSY 253 >gi|300114420|ref|YP_003760995.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] gi|299540357|gb|ADJ28674.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] Length = 499 Score = 207 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 96/477 (20%), Positives = 173/477 (36%), Gaps = 73/477 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 + AS+ + +W L D +G + L L+ + Sbjct: 2 NTASIISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMAD------------------ 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + G EY+ +L + YIA + F+ Sbjct: 42 --EYSQPPYRHEVG----IPPEYNWQSLKTKRGAELEGHYIALLRALGTRPGMLGQI-FT 94 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +++ LY++ K G++ + +IYE L+ + + GA + TPR Sbjct: 95 KAQNKIQDPAKLYRLIKMVDGVQWVMIGAD--IKGDIYEGLLEKNAEDTKSGAGQYFTPR 152 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHK 235 ++ + P +T+ DP CGTGGF A + ++D Sbjct: 153 ALIKAMVECV----------RPEPGKTIADPACGTGGFFLAAYDFLSDPKHYSLDKAQKA 202 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 HG E+ T +C+ M + + D I L +G+ + Y Sbjct: 203 FLKHQTFHGNEIVANTRRLCLMNMFLHNI---GEIDGESAISPNDALVAP--SGQSYDYV 257 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFGKK E E ++ + R S+ + F+ H+ L+ Sbjct: 258 LANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWAT-TSNKQLNFVQHIRALLKST---- 312 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+AA+V+ + LF G A GE+ IRR LLEN + I+ LPT +F+ + + NR Sbjct: 313 GKAAVVVPDNVLFEGGA--GET-IRRKLLENTDLHTILRLPTGIFYAKGVKANVLFFDNR 369 Query: 414 K--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSR 466 + +V + + + + K++ + + + + Y +R + S Sbjct: 370 EASPRPWTKEVWYYD----YRTNVHHTLKKKPMRYEDLAEFIACYHPTNRHERRESW 422 >gi|297572114|ref|YP_003697888.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595] gi|296932461|gb|ADH93269.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595] Length = 231 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 71/193 (36%), Positives = 108/193 (55%), Gaps = 4/193 (2%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 IW AE L GD+K ++G V+LPFT+L RL+ L T+ AV + + + Sbjct: 10 VALIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKVTSVPLQVKELQ 69 Query: 72 FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 + K GY +NTS ++L TL N NL Y+ +F+ A+ + E ++F + RL+K Sbjct: 70 YAKATGYPLWNTSNFTLKTLLDDPDNLEQNLTYYVQAFAPAAREVMEAYNFYNVFERLDK 129 Query: 130 AGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 AGLLY++ F S + LHPD V + M I+E LIRRF +E A + TPR+V+ L Sbjct: 130 AGLLYQVLSEFTSSKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTPREVISLM 189 Query: 188 TALLLDPDDALFK 200 LL +P++ + + Sbjct: 190 VNLLFNPEEDINR 202 >gi|77164707|ref|YP_343232.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707] gi|254433310|ref|ZP_05046818.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27] gi|76883021|gb|ABA57702.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707] gi|207089643|gb|EDZ66914.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27] Length = 499 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 97/477 (20%), Positives = 174/477 (36%), Gaps = 73/477 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 + AS+ + +W L D +G + L L+ + Sbjct: 2 NTASIISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMAD------------------ 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + G EY+ +L + YIA + F+ Sbjct: 42 --EYSQPPYRREVG----IPPEYNWQSLKTKRGAELEGHYIALLRALGARPGMLGQI-FT 94 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +++ LY++ K G++ + +IYE L+ + + GA + TPR Sbjct: 95 KAQNKIQDPAKLYRLIKMVDGVQWVMMGAD--IKGDIYEGLLEKNAEDTKSGAGQYFTPR 152 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHK 235 ++ + P RT+ DP CGTGGF A + ++D Sbjct: 153 ALIKAIVECV----------RPEPDRTIADPACGTGGFFLAAYDFLSDPKHYSLDKAQKH 202 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 HG E+ T +C+ M + + D I L +G+ + Y Sbjct: 203 FLKHETFHGNEIVANTRRLCLMNMFLHHI---GEIDGESAISPNDALVAP--SGQSYDYV 257 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFGKK E E ++ + R S+ + F+ H+ L+ Sbjct: 258 LANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWAT-TSNKQLNFVQHIRTLLKTT---- 312 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+AA+V+ + LF G A GE+ IRR LLEN + I+ LPT +F+ + + NR Sbjct: 313 GKAAVVVPDNVLFEGGA--GET-IRRKLLENTDLHTILRLPTGIFYAHGVKANVLFFDNR 369 Query: 414 K--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSR 466 + +V + + + + K++ + + + + Y +R + S Sbjct: 370 EASPHPWTKEVWYYD----YRTNVHHTLKKKPMRYEDLAEFIACYHPTNRHERRESW 422 >gi|189426563|ref|YP_001953740.1| N-6 DNA methylase [Geobacter lovleyi SZ] gi|189422822|gb|ACD97220.1| N-6 DNA methylase [Geobacter lovleyi SZ] Length = 486 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 96/484 (19%), Positives = 171/484 (35%), Gaps = 71/484 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 + ++L +W L D +G + L L+ + + + Sbjct: 2 TTSALIQKVWNFCHTLRDDGVS--YGDYLEQLTYLLFLKMADEYAQEPYNR-----DTHI 54 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 D S +G L LG T + I F Sbjct: 55 PKGHDWASLRGKSGEPLEAHYLAILHKLG---TGPGMLGAI---------------FFKA 96 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +++ L ++ + + + ++YE L+++ + GA + TPR + Sbjct: 97 QNKIQDPAKLARLVQMIDAEKWV--GMDTDTKGDLYEGLLQKNAEDTKSGAGQYFTPRHL 154 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPP 238 + A + P ++T+ DP CGTGGF A + G + Sbjct: 155 IDAMVACI----------RPEPLKTIADPACGTGGFFLGAHKWLTRPGSSLDKKQKEFLR 204 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 HG E+ P T +C+ + + + D N+ + L + +RF Y L+N Sbjct: 205 HKTFHGNEIVPNTRRLCLMNLFLHNI---GELDGEPNVDRSDALIAE--PKQRFDYVLAN 259 Query: 299 PPFGKKWEKDKDAVEKEHKNG--ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 PPFGKK E E R S+ + FL H+A+ L+ G+A Sbjct: 260 PPFGKKSSMTFTNEEGEEDKDALTYERQDFWET-TSNKQLNFLQHIASMLKET----GKA 314 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G AG +IR+ LLEN + ++ LPT +F+ + + Sbjct: 315 AVVLPDNVLFEGGAG---EKIRKKLLENCDVHTVLRLPTGIFYAQGVKANVVFFD---AR 368 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY-----VSRENGKFSRMLD 469 + GK+Q + N+ K R + ++ ++ + Y R + + Sbjct: 369 PKDGKIQ-TKGVWFYDLRTNKHFTLKTRTLKEEDLKEFITCYNPENRHERTEAERFKYFS 427 Query: 470 YRTF 473 Y Sbjct: 428 YDEL 431 >gi|307288976|ref|ZP_07568944.1| N-6 DNA Methylase [Enterococcus faecalis TX0109] gi|306500067|gb|EFM69416.1| N-6 DNA Methylase [Enterococcus faecalis TX0109] Length = 343 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 75/356 (21%), Positives = 151/356 (42%), Gaps = 40/356 (11%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A +F TP V + ++ + +++DPT G+G + + N++ Sbjct: 1 AGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLMLNVRNYLT- 53 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 P + HGQEL T+ + +++ ++++ N++ G TL+KD T Sbjct: 54 ------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTD 102 Query: 290 KRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + + + + NPP+ W D ++ R+G L S FL+H L+ Sbjct: 103 EPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLK 157 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G AIVL LF G A E IR+ LLE+ I A++ +P +LFF T+I T + Sbjct: 158 ET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 210 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 +L + V I+A+ + GK + ++++ ++IL+ Y R+ + ++ Sbjct: 211 IVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKGVEKYAH 263 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + + + P + ++ + + +K+ ++L+ + Sbjct: 264 LATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLEAI 319 >gi|90425136|ref|YP_533506.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18] gi|90107150|gb|ABD89187.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18] Length = 489 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 91/461 (19%), Positives = 158/461 (34%), Gaps = 72/461 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W L + + + T L L LE T + Sbjct: 2 TTTTDIVAKLWSLCHVLRD--DGVTYNEYVTELTFLLFL-KMLEETGK------ESRLPK 52 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + K G + + L LG K F+ Sbjct: 53 GYRWAALAKREGLDQLDYYKRLLLDLGK---------------PEVKDGLVRAIFTDAQT 97 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 RL K L + + ++ + +YE L+ + S+ GA + TPR ++ Sbjct: 98 RLRKPTNLKALTSSIDQLDWFSAREE--GLGTLYEGLLEKNASDKKSGAGQYFTPRPLID 155 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--------P 237 L+ P + T+ DP GT GF+ A ++ D Sbjct: 156 CIVRLM----------KPHVGETVQDPAAGTAGFIVAADRYIKDRTDDLYKLPEQQVFFQ 205 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 +G EL P+TH +C+ +L+ +E ++ TLS D + L+ Sbjct: 206 RHHAFNGAELVPDTHRLCMMNLLLHGIEG--------GVELADTLSPDGERLSKADLILT 257 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K + + S+ + F+ H+ L+ GGRAA Sbjct: 258 NPPFGTK-KGGGRPTRSDFSITAD---------TSNKQLAFVEHVVRALK----AGGRAA 303 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V+ + LF G ++R WL++ + I+ LPT +F+ + T + KT++ Sbjct: 304 VVVPDNVLFEDNTG---RDLRTWLMDLCSLHTILRLPTGIFYAQGVKTNVLFFQRGKTDK 360 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 K + DL ++ G K R + + Y S Sbjct: 361 ANTKT--VWVYDLRANMPAFG-KTRPLTAADFAEFEKAYGS 398 >gi|58583086|ref|YP_202102.1| type I restriction-modification system, M subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427680|gb|AAW76717.1| type I restriction-modification system, M subunit [Xanthomonas oryzae pv. oryzae KACC10331] Length = 514 Score = 206 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 103/566 (18%), Positives = 190/566 (33%), Gaps = 77/566 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL L +E + + + Sbjct: 2 THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + N L LG ++ + IA+ +A+ R Sbjct: 58 SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L + G++ + ++YE L+++ +E GA + TPR ++ Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236 + P + + DP GT GFL A ++ Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ + + + I+ G++L + L Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG K G K S+ + FL H+ L GGRA Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLTP----GGRA 308 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G +EIRR L++ + ++ LPT +F+ + T + Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 R AT ++ N KR + + Y + NG S D G Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPNFGKRTPFGPTHLKPFEEAYGTDPNG-ASPRTDAGEQG 424 Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 R R L +S++ D + ++ L+ + + L+ + + Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483 Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553 G + +++ E L+V + Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509 >gi|323526112|ref|YP_004228265.1| adenine-specific DNA-methyltransferase [Burkholderia sp. CCGE1001] gi|323383114|gb|ADX55205.1| Site-specific DNA-methyltransferase (adenine-specific) [Burkholderia sp. CCGE1001] Length = 480 Score = 206 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 168/468 (35%), Gaps = 76/468 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + ++ + L+ Sbjct: 1 MSTITNDIVAKLWNLCNVLRDDGVTYHEYVTELTYLLFLKM------------------A 42 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDF 120 + + Y L S LE+Y + +I F Sbjct: 43 KETGTEDRL-----------PEGYRWDDLESKAAPERLEAYKVMLIHLGTHGSIITKEIF 91 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ + ++K L + I+ + + ++YE L+ + +E GA + TP Sbjct: 92 AAARSFIDKPATLTALITAIDAIDWYSAKTE--GLGDLYEGLLEKNANEKKSGAGQYFTP 149 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------SHH 234 R ++ +L+ P + T+ DP GTGGFL A +++ Sbjct: 150 RVLIDSIVSLM----------KPKLGETIQDPAAGTGGFLIAANHYIRKHNDLEALSEAA 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 L HG E+ H + + +++ L+SD I+ G +LS + + Sbjct: 200 YKKYRLQFHGMEIVQAAHRLGLMNLMLHDLDSDETG----GIRYGDSLSSEGQQLPKADL 255 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPFG K + + S+ + FL H+ L+ GG Sbjct: 256 IITNPPFGTK-KGGGLPTRDDF-----------TFPTSNKQLAFLQHIYRALKP----GG 299 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G ++IRR L++ + I+ LPT +F+ + T + + K Sbjct: 300 RAAVVLPDNVLFESNVG---ADIRRDLMDKCYLHTILRLPTGIFYAQGVKTNVLFFTRGK 356 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 T+ +G + DL ++ G KR + + + + S +G Sbjct: 357 TD--KGNTTGLWVYDLRANMPQFG-KRTPLTREHFAEFEAAFGSAPDG 401 >gi|120601905|ref|YP_966305.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4] gi|120562134|gb|ABM27878.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4] Length = 495 Score = 206 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 83/492 (16%), Positives = 166/492 (33%), Gaps = 76/492 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTD-FGKVI--LP-FTLLRRLECALEPTRSAVREKYLAF 62 ++ + +W L +G + L L+ + Sbjct: 2 TSQEIVARVWSFCHVLR---DAGVSYGDYLEQLTYLIFLKMAD----------------- 41 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDF 120 + + G SE + +L YI + + K + F Sbjct: 42 ---EYANPPYNRDIG----IPSELNWPSLKKQRGAELEAQYIRTLRELGKQKGMLGQI-F 93 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +++ +L ++ V +IYE L+ + + GA + TP Sbjct: 94 TKAQNKIQDPAMLSRVIDMIDKESWAQMGAS--VKGDIYEGLLEKNAEDTKSGAGQYFTP 151 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R ++ + P +T+ DP CGTGGFL A + + D + Sbjct: 152 RPLIKAIVDCM----------HPEPGKTISDPACGTGGFLLAAYDFILDRYKGQLDKAQV 201 Query: 241 V------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 G E+ P T +C+ +L+ + D I L Y Sbjct: 202 AYLKEGAFTGNEIVPNTRRLCLMNLLLHGI---GSIDGEPPIHPDDALLS--TPSSTVDY 256 Query: 295 CLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPFGKK D ++E ++ R + + + F+ H+ + L+ Sbjct: 257 VLTNPPFGKKSTMTVTNDDGKQEKEDFVYNRQDFWVT-TGNKQLNFVQHIRSMLKST--- 312 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+AA+V+ + LF G G +R+ L++ + I+ LPT +F+ + + N Sbjct: 313 -GKAAMVVPDNVLFEGG---GGETVRKELMKTTNLHTILRLPTGIFYAHGVKANVIFFDN 368 Query: 413 RKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-- 468 ++ + + + + + + KR+ + D ++ Y S + + Sbjct: 369 KEASKKPWTKDIWFYD----YRTNIHHTLKRKPLTYDDLLPFVECYQSTNRDELAHTWSE 424 Query: 469 -DYRTFGYRRIK 479 +R+ Sbjct: 425 SSNPEGRFRKYT 436 >gi|213612905|ref|ZP_03370731.1| DNA methylase M, host modification [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647548|ref|ZP_03377601.1| DNA methylase M, host modification [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 465 Score = 206 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 84/486 (17%), Positives = 163/486 (33%), Gaps = 94/486 (19%) Query: 7 SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L +WK ++L + + L+ + Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMC------------------KET 43 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSS 122 + + Y Y L S + L+ Y + ++ K + + F + Sbjct: 44 GQEAD----------YLPEGYRWDDLKSRIDQEQLQFYRKMLVHLGEDKKKLVQAV-FHN 92 Query: 123 TIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + + ++ N ++ + ++YE L+++ +E GA + TP Sbjct: 93 VCTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------- 233 R ++ LL P + DP GT GFL +A +V + Sbjct: 153 RPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 G EL P T + + L+ +E + + I+ G+TL D + Sbjct: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQA 260 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 +NPPFG + + S+ + F+ H+ L Sbjct: 261 DIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP---- 302 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GGRAA+V+ + LF EIRR L++ + I+ LPT +F+ + T + + Sbjct: 303 GGRAAVVVPDNVLF----DRVGLEIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 358 Query: 413 R------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------R 459 + ++ V + + T++ G KR + + +Y R Sbjct: 359 GTVANPTQDKDCTDDVWVYDLR---TNMPRFG-KRTPFTEQYLQPFETVYGEDPHGLSPR 414 Query: 460 ENGKFS 465 G++S Sbjct: 415 AEGEWS 420 >gi|309811650|ref|ZP_07705429.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185] gi|308434451|gb|EFP58304.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185] Length = 500 Score = 206 bits (525), Expect = 1e-50, Method: Composition-based stats. Identities = 109/548 (19%), Positives = 197/548 (35%), Gaps = 66/548 (12%) Query: 6 GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 +A L + +W + L D ++ + + L+ + R+ K Sbjct: 2 TTARQLVDKLWSYCDVLRDDGVGVIEYTEQLTYLLFLKMAD-----ERAKRPLKAERIIP 56 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 + V+ G N E + + + + + + F Sbjct: 57 EEYSWDRLVQATG----NDLELEYTRI------------LNGLARE-EGVIGTI-FRKAQ 98 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 R+ L ++ + G E T D + YE L+ + S+ GA + TPR ++ Sbjct: 99 NRVTDPAKLRRLVVDLIGKENWSQTGTDIN-GDAYEGLLAKGASDKGSGAGQYFTPRALI 157 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VADCGSHHKIPPIL 240 + PG+ + DP CGTGGFL A H V + + + Sbjct: 158 QAI----------VDVVDPGVDDRVTDPACGTGGFLLVAHEHASANVNEMTPNQRHNLQH 207 Query: 241 VP-HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 HG EL T + +L+ + S L I +LS D TG+R+ LSNP Sbjct: 208 SFAHGVELVDGTARLAAMNLLLHGMGSSNGDSL---IHVRDSLSAD--TGERWSVVLSNP 262 Query: 300 PFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG+K + +E ++ + S+ + F+ H+ L GRAA+ Sbjct: 263 PFGRKSSVTMMGADGRESRDDREIERQDFVATTSNKQLNFVQHIMTIL----ETNGRAAV 318 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VL + LF G A GE+ IRR LL + + ++ LPT +F+ I + + Sbjct: 319 VLPDNVLFEGGA--GET-IRRKLLNDYDLHTMLRLPTGIFYAQGIKANVLFFDRKMARPG 375 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SRENGKFSRMLDY--- 470 R Q + DL T+ ++ K+ + +D Y +R+ + + Y Sbjct: 376 RPWTQKLWVYDLRTN-KHFTLKQNPLTRADLDDFVDNYRVGERENRKESERWKAFTYDEI 434 Query: 471 --RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 R I LR + + + +I + L + + + + +Q+ Sbjct: 435 VARDKANLDITWLRDESLEDLASLPSPDVIAREIVEDLTAALAE--FEAVATALEEQLGH 492 Query: 529 YGWAESFV 536 ++ Sbjct: 493 THAGDTTA 500 >gi|75766307|pdb|2AR0|A Chain A, Crystal Structure Of Type I Restriction Enzyme Ecoki M Protein (Ec 2.1.1.72) (M.Ecoki) gi|75766308|pdb|2AR0|B Chain B, Crystal Structure Of Type I Restriction Enzyme Ecoki M Protein (Ec 2.1.1.72) (M.Ecoki) Length = 541 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 89/490 (18%), Positives = 165/490 (33%), Gaps = 97/490 (19%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLA 61 + + L +WK ++L + + L L+ Sbjct: 2 SLNNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLK------------------X 41 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDF 118 + + E Y Y L S + L+ Y + ++ K + + Sbjct: 42 CKETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKXLVHLGEDDKKLVQAV 91 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F + + + + + N ++ + + YE L+++ +E GA Sbjct: 92 -FHNVSTTITEPKQITALVSNXDSLDWYNGAHGKSRDDFGDXYEGLLQKNANETKSGAGQ 150 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233 + TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 YFTPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 200 Query: 234 -----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 LDGDTQDFQIHRAFIGLELVPGTRRLALXNCLLHDIEGNLDHGGA--IRLGNTLGSDGEN 258 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + H +NPPFG + + S+ + F H+ L Sbjct: 259 LPKAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFXQHIIETLHP 304 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GGRAA+V+ + LF G G ++IRR L + + I+ LPT +F+ + T + Sbjct: 305 ----GGRAAVVVPDNVLFEGGKG---TDIRRDLXDKCHLHTILRLPTGIFYAQGVKTNVL 357 Query: 409 ILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---- 458 + + + V + + T+ + G KR D+ + +Y Sbjct: 358 FFTKGTVANPNQDKNCTDDVWVYDLR---TNXPSFG-KRTPFTDEHLQPFERVYGEDPHG 413 Query: 459 ---RENGKFS 465 R G++S Sbjct: 414 LSPRTEGEWS 423 >gi|295401703|ref|ZP_06811670.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|294976323|gb|EFG51934.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93] Length = 493 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 95/563 (16%), Positives = 192/563 (34%), Gaps = 99/563 (17%) Query: 10 SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + +W L D + + + L+ Sbjct: 5 EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 +K G + +Y +L + + + + + + + ++ + Sbjct: 39 ---MMKETGQEYIIPEKYRWDSLVEKDGIELKEHYQQLLLDLGKEENELLKQI-YTDATS 94 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + + L KI ++ + ++ + + ++YE L+ + SEV GA + TPR ++ Sbjct: 95 NIREPKNLEKIIQSINNLDWYNAKQE--GLGDLYEGLLEKNASEVKSGAGQYFTPRVLID 152 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237 + L+ +P +DP GT GF+ A HV + + Sbjct: 153 VIVELV----------NPQPGERCHDPAAGTFGFMIAADRHVREQTDDYFDLSQEEIEFQ 202 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G EL +TH + + L+ + + I G TLS + K + L+ Sbjct: 203 KYKAFSGVELVRDTHRLAIMNALLHDIHGE--------ILLGDTLSSLGESLKNYDVILT 254 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K ++ S+ + FL H+ L+ RAA Sbjct: 255 NPPFGTKKGGERATRTD------------FTFTTSNKQLNFLQHIYRALKPNGKA--RAA 300 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + KT+ Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKTDV 357 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------------RENGKF 464 K + DL T++ + G KR + + + Y + + Sbjct: 358 GNTK--EVWVYDLRTNMPSFG-KRNPLTKEHFEGFIKAYKAEDRRKVKDERWNVFTREEI 414 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ D G + + + E + +L+ + + LK + Q Sbjct: 415 AKKGDSLDIG----LIADESLSVYENLPDPIDSAEEVVEKLELAISLFNEVIAELKAVEQ 470 Query: 525 QIYPYGWAESFVKESIKSNEAKT 547 ++ +K + S K Sbjct: 471 PNSYQTTSKEVLKVAETSEVLKK 493 >gi|282918215|ref|ZP_06325956.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus C427] gi|282317912|gb|EFB48280.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus C427] Length = 318 Score = 205 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 143/359 (39%), Gaps = 44/359 (12%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 1 GEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVGKEAK------ 46 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + GQE T+ + ML+ + R + +I+ TL F G F Sbjct: 47 ----VYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDA 97 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ KW D E +G L S F+ H+ + L+ G Sbjct: 98 VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 148 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413 A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + + Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 K ++ V I+A++ + GK + ++D Q +I+D Y +E K+S + Sbjct: 204 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQE 259 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + P R ++ L+ K + + ++++ Sbjct: 260 IADNDYNLNIP-RYVDAFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 317 >gi|241762635|ref|ZP_04760707.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372773|gb|EER62485.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 487 Score = 205 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 95/467 (20%), Positives = 160/467 (34%), Gaps = 78/467 (16%) Query: 6 GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + +W L D + ++ + L+ LE E + A Sbjct: 2 STTTDIVAKLWSLCNVLRDDGVTYNEYVTELTYLLFLKMLE---ETEKEARL-------P 51 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 K G + + L LG ++ L S I F Sbjct: 52 EEWRWSLLAKREGLDQLDYYKAMLLELGKA--KDKLVSAI---------------FIDAQ 94 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 RL K L + N ++ + N+YE L+ + S+ GA + TPR ++ Sbjct: 95 TRLRKPTNLKALTSNIDQLDWFSAREE--GLGNLYEGLLEKNASDKKSGAGQYFTPRPLI 152 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKI 236 L+ P + DP GT GFL A ++ D Sbjct: 153 DCIVRLM----------RPQAGEVIQDPAAGTAGFLVAADRYIKDHTDDLYTLTKEQASF 202 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P+TH + + +L+ +E +NI TLS D + + L Sbjct: 203 QRHNAFCGAELVPDTHRLSMMNLLLHGIEG-----GVENI---DTLSPDGEALPKANLIL 254 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG K + + S+ + F+ H+ L GGRA Sbjct: 255 TNPPFGTK-KGGGRPTRSDFSITAD---------TSNKQLAFVEHIVRALSP----GGRA 300 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+V+ + LF G +R WL++ + I+ LPT +F+ + T + K++ Sbjct: 301 AVVIPDNVLFEDNTG---RRLRTWLMDLCDMHTILRLPTGIFYAQGVKTNVLFFQRGKSD 357 Query: 417 ERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + K V + + ++ G K R + Y + NG Sbjct: 358 KGNTKAVWFYD---MRANMPAFG-KTRPLTVADFADFEKAYGAEANG 400 >gi|282919573|ref|ZP_06327308.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus C427] gi|282317383|gb|EFB47757.1| type I restriction enzyme M protein [Staphylococcus aureus subsp. aureus C427] Length = 318 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 144/359 (40%), Gaps = 44/359 (12%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 1 GEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG---------- 42 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 K + GQE T+ + ML+ + R + +I+ TL F G F Sbjct: 43 KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDA 97 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ KW D E +G L S F+ H+ + L+ G Sbjct: 98 VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 148 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413 A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + + Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 K ++ V I+A++ + GK + ++D Q +I+D Y ++ K+S + Sbjct: 204 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKKTIDKYSYSATLQE 259 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + P R ++ L+ K + + ++++ Sbjct: 260 IADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 317 >gi|323477547|gb|ADX82785.1| type 1 restriction modification enzyme, subunit m [Sulfolobus islandicus HVE10/4] Length = 586 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 87/487 (17%), Positives = 179/487 (36%), Gaps = 64/487 (13%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----RSAVRE 57 E S L + + A+ + + +L F + + E + Sbjct: 86 ESELSKGDLFTVLKQGADLIRLGLD---YRS-LLVFLFYKAISDKYEDEVNQIIKDEGLS 141 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-RNNLESYIASFSDNAKAIFE 116 K A+ +N + + + G + + + N ++ + F+ Sbjct: 142 KKEAYIVANSKFKMYDENTGEL------LTWNEITKKNDYLVEFQNALIKFATLNPETIS 195 Query: 117 DFDFSSTIARLEKAGL-------LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + + +L + L L +I + F ++ + + Y +++ +F Sbjct: 196 KDLMIALLNKLGISNLTSEHKAKLDQIKRLFDKLDFSNVNYD--AIGDAYMYILAQFAPT 253 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + + TP +V+ L L+ P + DP G+G L +A ++ + Sbjct: 254 KGKE-GEVYTPHEVIKLLIRLI----------DPEPGSDILDPAMGSGAMLIEAYKYIKE 302 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 K GQE P+ A+ ++ +E++ G +L K F+ Sbjct: 303 KNGGVK------LFGQEYNPDMAAIAKLNFILHGIENNLVEVQI-----GDSLRKLKFSE 351 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + Y ++NPP+ + ++ F G + ++ + Sbjct: 352 NSQFQVDYVVANPPWNQDGYGEESIGNDISLRKI---FKYGFTPNNTADWAWVQLMLYYA 408 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + + +VL L E IR ++ DLIEAI+ LP LF+ T ++ Sbjct: 409 KK------KVGVVLDQGALSREGK---ERTIRERIVNEDLIEAIILLPEKLFYNTQVSGI 459 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFS 465 + IL+ K +ER+GK+ I+ATDL+ +K ++D+ +QI++ Y + FS Sbjct: 460 IMILNKEKEKERKGKILFIDATDLYIKHPEV-RKLNKLDDEHIQQIVETYREFKTVLSFS 518 Query: 466 RMLDYRT 472 R++D Sbjct: 519 RVVDIEE 525 >gi|188577915|ref|YP_001914844.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522367|gb|ACD60312.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 514 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 102/566 (18%), Positives = 191/566 (33%), Gaps = 77/566 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL L +E + + + Sbjct: 2 THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + N L LG ++ + IA+ +A+ R Sbjct: 58 SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L + G++ + ++YE L+++ +E GA + TPR ++ Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236 + P + + DP GT GFL A ++ Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ + + + I+ G++L + L Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG K G K S+ + FL H+ L+ GGR+ Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRS 308 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G ++IRR L++ + ++ LPT +F+ + T + Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 R AT ++ N KR + Y S NG S D G Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPNFGKRTPFGPTHLKPFEQAYGSDPNG-ASPRTDAGEQG 424 Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 R R L +S++ D + ++ + L+ + + L+ + + Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPSPEVLAAEAMAELSEALRELDALMQ 483 Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553 G + +++ E L+V + Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509 >gi|138894434|ref|YP_001124887.1| Type I restriction enzyme StySPI M protein [Geobacillus thermodenitrificans NG80-2] gi|134265947|gb|ABO66142.1| Type I restriction enzyme StySPI M protein [Geobacillus thermodenitrificans NG80-2] Length = 493 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 93/559 (16%), Positives = 190/559 (33%), Gaps = 91/559 (16%) Query: 10 SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + +W L D + + + L+ Sbjct: 5 EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 +K G + +Y +L + + + + + + + ++ + Sbjct: 39 ---MMKETGQEYIIPEKYRWDSLVEKDGIELKEHYQQLLLDLGKEENELLKQI-YTDATS 94 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + + L KI ++ + ++ + + ++YE L+ + SEV GA + TPR ++ Sbjct: 95 NIREPKNLEKIIQSINNLDWYNAKQE--GLGDLYEGLLEKNASEVKSGAGQYFTPRVLID 152 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237 + L+ +P +DP GT GF+ A HV + + Sbjct: 153 VIVELV----------NPQPGERCHDPAAGTFGFMIAADRHVREQTDDYFDLSQEEIEFQ 202 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G EL +TH + V L+ + + I G TLS + K + L+ Sbjct: 203 KYKAFSGVELVRDTHRLAVMNALLHDIHGE--------ILLGDTLSSLGESLKNYDVILT 254 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K ++ S+ + FL H+ L+ RAA Sbjct: 255 NPPFGTKKGGERATRTD------------FTFTTSNKQLNFLQHIYRALKPNGKA--RAA 300 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +++ + LF G G ++IRR L++ + I+ LPT +F+ + T + + KT+ Sbjct: 301 VIVPDNVLFEGGVG---ADIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKTDV 357 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRTF 473 K + DL T++ + G KR + + + Y + + + + Sbjct: 358 GNTK--EVWVYDLRTNMPSFG-KRNPLTKEHFEGFIKAYTAEDRRKVKDERWNVFTREEI 414 Query: 474 GYRR-----IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + + + E + +L+ + + LK + Q Sbjct: 415 AKNGDSLDIGLIADESLSVYENLPDPIDSAEEAVEKLELAISLLNEVIAELKAVEQPNSY 474 Query: 529 YGWAESFVKESIKSNEAKT 547 ++ +K + S K Sbjct: 475 QATSKEILKVAETSEVLKK 493 >gi|92112219|ref|YP_572147.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043] gi|91795309|gb|ABE57448.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043] Length = 495 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 93/463 (20%), Positives = 167/463 (36%), Gaps = 67/463 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 +A +LAN +W L D +G + L L+ +P + Sbjct: 2 NAQTLANKVWNFCHTLRDDGVG--YGDYLEQLTYLIFLKMAHEYSQPPY-----RRDTGI 54 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + S V+ G L TLG S IF Sbjct: 55 PAGYGWPSLVRRTGAELEAHYLDLLRTLGQQ-------------SGTLGQIFTKAQ---- 97 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +++ L ++ + + V +IYE L+ + + GA + TPR + Sbjct: 98 -NKIQDPAKLARVIHMIDAEKWAM--LDADVKGDIYESLLEKNAEDTKSGAGQYFTPRAL 154 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHKIP 237 + A + P +T+ DP+ GTGGF A + + + + Sbjct: 155 IQAMVACV----------QPQPGKTIADPSAGTGGFFLAAYDWITEHHGARMDREQKQFL 204 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 HG E+ T +C+ + + + D NI L R+ Y L+ Sbjct: 205 KHHAFHGNEIVANTRRLCLMNLFLHNI---GEIDDQPNIAPTDALIGP--APARYDYVLA 259 Query: 298 NPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 NPPFG+K E E + + R S+ + F+ H+ L+ G+ Sbjct: 260 NPPFGRKSSMTVTNEEGEQEKEDFVYNRQDFWAT-TSNKQLNFVQHIRTMLKE----NGQ 314 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413 AA+V+ + LF G A GE+ +RR LL + I+ LPT +F+ + + N+ Sbjct: 315 AAVVVPDNVLFEGGA--GET-VRRKLLTTTELHTILRLPTGIFYANGVKANVLFFDNKPG 371 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + E + + + + + + KR+ + + ++ +D Y Sbjct: 372 RAEPWTKDIWIYD----YRTNVHHTLKRKPLRLEHLQEFIDCY 410 >gi|56416309|ref|YP_153384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365232|ref|YP_002144869.1| DNA methylase M [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130566|gb|AAV80072.1| DNA methylase M, host modification [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096709|emb|CAR62332.1| DNA methylase M, host modification [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 528 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 85/488 (17%), Positives = 164/488 (33%), Gaps = 98/488 (20%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120 + + + Y Y L S + L+ Y + ++ K + + F Sbjct: 42 ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDKKKLVQAV-F 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + + ++ N ++ + ++YE L+++ +E GA + Sbjct: 91 HNVSTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ LL P + DP GT GFL +A +V + Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G EL P T + + L+ +E + + I+ G+TL D Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + +NPPFG + + S+ + F+ H+ L Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+V+ + LF EIRR L++ + I+ LPT +F+ + T + Sbjct: 303 --GGRAAVVVPDNVLF----DRVGLEIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 356 Query: 411 SNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458 + + ++ V + + T++ G KR + + +Y Sbjct: 357 TKGTVANPTQDKDCTDDVWVYDLR---TNMPRFG-KRTPFTEQYLQPFETVYGEDPHGLS 412 Query: 459 -RENGKFS 465 R G++S Sbjct: 413 PRAEGEWS 420 >gi|166711006|ref|ZP_02242213.1| type I restriction-modification system, M subunit [Xanthomonas oryzae pv. oryzicola BLS256] Length = 514 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 103/566 (18%), Positives = 189/566 (33%), Gaps = 77/566 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL L +E + + + Sbjct: 2 THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + N L LG ++ + IA+ +A+ R Sbjct: 58 SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L + G++ + ++YE L+++ +E GA + TPR ++ Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236 + P + + DP GT GFL A ++ Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDELYGPDVTAKKRSF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ + + + I+ G++L + L Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG K G K S+ + FL H+ L GGRA Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLTP----GGRA 308 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G +EIRR L++ + ++ LPT +F+ + T + Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSAA 365 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 R AT ++ N KR + Y + NG S D G Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEQAYGTDPNG-ASPRTDAGEQG 424 Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 R R L +S++ D + ++ L+ + + L+ + + Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483 Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553 G + +++ E L+V + Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509 >gi|84624925|ref|YP_452297.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368865|dbj|BAE70023.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 514 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 104/566 (18%), Positives = 189/566 (33%), Gaps = 77/566 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W + L ++ + LL L +E + + + Sbjct: 2 TQNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 +G + N L LG ++ + IA+ +A+ R Sbjct: 58 SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L++ L + G++ + ++YE L+++ +E GA + TPR ++ Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236 + P + + DP GT GFL A ++ Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL P T + + L+ + + + I+ G++L + L Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPFG K G K S+ + FL H+ L GGRA Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLTP----GGRA 308 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G +EIRR L++ + ++ LPT +F+ + T + Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 R AT ++ N KR + Y S NG S D G Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEQAYGSDPNG-ASPRTDAGEQG 424 Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 R R L +S++ D + ++ L+ + + L+ + + Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483 Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553 G + +++ E L+V + Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509 >gi|319788901|ref|YP_004090216.1| Site-specific DNA-methyltransferase (adenine-specific) [Ruminococcus albus 7] gi|315450768|gb|ADU24330.1| Site-specific DNA-methyltransferase (adenine-specific) [Ruminococcus albus 7] Length = 476 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 94/538 (17%), Positives = 178/538 (33%), Gaps = 88/538 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ C T A+ E+Y Sbjct: 2 NNQEIVAKLWNLCNVLRDDGITYQQYVTELTYIL---FLKM--CKETDTEKAIPEEY--- 53 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + G + L LG + I + Sbjct: 54 -----RWDKLLSKQGIELKKFYKELLEHLGENCQGR------------VREI-----YQG 91 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +++ L KI + + + N+YE L+ + +E GA + TPR Sbjct: 92 AQTNIDEPKNLEKIITTIDQFDWYSAKEE--GLGNLYEGLLEKNATEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234 ++++ T L+ +P DP CGT GF+ A ++V + Sbjct: 150 LINVMTRLI----------APKAGERCNDPACGTFGFMIAADHYVKEQTDDLFDLSVDEQ 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + G EL +TH + + ++ + I G TLS K F Sbjct: 200 EFQRTQAFSGCELVHDTHRLALMNAMLHDISGP--------IYLGDTLSNYGKQMKGFDV 251 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K ++ + S+ + FL H+ L + Sbjct: 252 VLTNPPFGTKKGGERATRDD------------LTFPTSNKQLNFLQHIYRSLNQSGHA-- 297 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF A +IRR L++ + I+ LPT +F+ + T + + Sbjct: 298 RAAVVLPDNVLF---ADGDGEKIRRDLMKKCNLHTILRLPTGIFYAQGVKTNVLFFTRGT 354 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 ++ K + DL + + + G K + + + ++ Y + S + + Sbjct: 355 ADKGNTK--EVWIYDLRSEMPSFG-KTNPLKESHFDEFVECYHA---EDISARQETWSEE 408 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 + R S+ + + ++L+ + + A Sbjct: 409 NPNGRWRR---YSYEDILERDKTSLDISWIKSANTSDDYTLTELLETIKTKSENIASA 463 >gi|186684991|ref|YP_001868187.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] gi|186467443|gb|ACC83244.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] Length = 489 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 95/469 (20%), Positives = 154/469 (32%), Gaps = 92/469 (19%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 + +WK + L D T L+ E T + G Sbjct: 6 DIVQKLWKLCDVLRDD-----------GVTYLQY---VTELTYLLFLKMAQETGAEKQLP 51 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--------IASFSDNAKAIFEDFDFS 121 E Y L + L Y S +AIF + S Sbjct: 52 EG--------------YRWGNLVNKGETEQLTFYRSLLLMLGSEKSSQRVQAIFVNAQTS 97 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 I R +L K+ + ++ + ++YE L+++ E GA + TPR Sbjct: 98 LKIPR-----ILKKLVTSIDELDWFSEHRD--EFGDLYEGLLQKNADEKKSGAGQYFTPR 150 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HH 234 ++ AL+ P + DP GTGGFL ++ Sbjct: 151 PLIDCMVALI----------KPQPGELIQDPAAGTGGFLIAGDRYIRQYHDPFEWTEAQQ 200 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 +G EL + H + + M++ +E G TLS + Sbjct: 201 SFQQYQAFYGMELVQDAHRLMLMNMMLHGIEGAVD--------LGDTLSSQGQRLAKADV 252 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K + + F S+ + FL H+ L+ G Sbjct: 253 ILTNPPFGTKKGGGLPSRDD---------FTY---STSNKQLAFLQHIYRSLKPE----G 296 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G IR L+ + I+ LPT +F+ + T + Sbjct: 297 RAAVVLPDNVLFEDGQG---KSIRADLMNKCNLHTILRLPTGIFYAQGVKTNVLFFQRGT 353 Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 TE+ K V + + T++ + G KR + + + Y NG Sbjct: 354 TEKGNTKAVWFYD---MRTNMPSFG-KRFPLTREHFAEFEQCYGDDPNG 398 >gi|164688286|ref|ZP_02212314.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM 16795] gi|164602699|gb|EDQ96164.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM 16795] Length = 317 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 141/342 (41%), Gaps = 35/342 (10%) Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + +YDP CG+GG ++ V + + + +GQE P T + M Sbjct: 3 EMIEPFKGYVYDPACGSGGMFVQSLKFVEEHSGNA---FDISVYGQESNPTTWKLAKMNM 59 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 IR +E++ + T +DL + + L+NPPF + ++ Sbjct: 60 AIRGIENNLGS------KNADTFHEDLHKNLKADFILANPPFNQSDWGQPLLLD------ 107 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 R+ G P + + ++ H+ +KL G+A +VL++ L S E +IR+ Sbjct: 108 -DPRWKWGTPPAGNANYGWIEHMLDKLSQK----GKAGVVLANGSL--SSNTSNEGKIRK 160 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +L NDL++ IVALP LF+ T I +W + K + +G+ I+A + + Sbjct: 161 TILNNDLVDCIVALPDKLFYTTGIPVCIWFFNRDK--KHKGQTLFIDARKMGDMVNR--- 215 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARL 498 + R ++D+ ++I D Y+S + + + G+ ++ + +IL + Sbjct: 216 RLRELSDEDIKKIADTYISWQKEEGYEDV----KGFCKVANMDEIKENDYILTPGRYVGI 271 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 E + + K + +Q E +++ + Sbjct: 272 ED---VEDDGEPFEEKMERLTKTLSEQFARSRELEDEIRKQL 310 >gi|159026886|emb|CAO89137.1| hsdM [Microcystis aeruginosa PCC 7806] Length = 495 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 161/474 (33%), Gaps = 64/474 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + AS+ + +W L D +G + T L L + ++Y Sbjct: 2 NTASIVSKVWSFCNTLRDDGVS--YGDYLEQLTYLLFL---------KMADEYAK----- 45 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---KAIFEDFDFSST 123 + + G F Y +L S +LE++ K + F+ Sbjct: 46 ---PPYNRKIGIPF----AYDWQSLRSKR-GADLEAHYLGILRELGQKKGLLGQI-FTKA 96 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +++ L KI + V +IYE L+ + + GA + TPR + Sbjct: 97 QNKIQDPAKLLKIITMIDEENWVM--METDVKGDIYEGLLEKNAEDTKSGAGQYFTPRPL 154 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPI 239 + L P + T+ DP CGTGGF A N + + Sbjct: 155 IWSMVECL----------RPQPMATIADPACGTGGFFLAAYNFLVKNYPLDREQKEFLKK 204 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 HG E+ T + + M + + D I L + Y L+NP Sbjct: 205 STFHGNEIVANTRRLALMNMFLHNIG--DINDEQCFIASTDALIAP--SPFSVDYVLANP 260 Query: 300 PFGKKWEKDKDAVEKE--HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PFGKK + E ++ R S+ + F+ H+ + L+ G+AA Sbjct: 261 PFGKKSSLTFTNEDGEQDREDLTYNRQDFWAT-TSNKQLNFVQHIRSMLKSR----GQAA 315 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V+ + LF G AG +R+ LL + I+ LPT +F++ + + N+ + Sbjct: 316 VVVPDNVLFEGGAG---ETVRKQLLSTTDLHTILRLPTGVFYKQGVKANVIFFDNKPAAK 372 Query: 418 RRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLD 469 A + N K+ + + + Y + + S Sbjct: 373 DPW----TKAIWFYDFRTNIHFTLKKNPLKPADLQDFITCYHPQNRHQRSETYS 422 >gi|304383190|ref|ZP_07365663.1| type I restriction-modification system DNA-methyltransferase [Prevotella marshii DSM 16973] gi|304335661|gb|EFM01918.1| type I restriction-modification system DNA-methyltransferase [Prevotella marshii DSM 16973] Length = 473 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 97/529 (18%), Positives = 173/529 (32%), Gaps = 85/529 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57 MT + +L +W A L G + I L L+ + + E Sbjct: 1 MTINISTEQALTKKVWNLATTLAGAGVA--YTDYITQLTYLLFLKM-----DAENEELFE 53 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + + + +++ G E +L L ++NL I Sbjct: 54 E-GSSIPEGYRWRNLIELDGLDLTEQYEKTLKILSE---QDNLIGTI------------- 96 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F+ ++K L K+ + + V IYE ++ + G + GA + Sbjct: 97 --FTKAQNEIDKPVYLKKVISMIDEEQWL--VMDGDVKGAIYEGILEKNGQDKKSGAGQY 152 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR ++ + P + T+ DP CGTGGFL A + + Sbjct: 153 FTPRPLIQAMVDCI----------KPKIGETVCDPACGTGGFLLAAYDCMKQQSQDKDKR 202 Query: 238 ---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 HG + P + + + + +D I +L K+ Sbjct: 203 EFLNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IACEDSLEKE--PDTLVDV 255 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG + D + + + FL H+ L+ GG Sbjct: 256 ILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GG 300 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G AG IR+ LL + + I+ LPT +F+ + + + + Sbjct: 301 RAAVVLPDNVLFEGGAG---ETIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFTKGQ 357 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 + + + + + + + Y + + R Sbjct: 358 PTK---DIWFYD----YRTDVKHTLATNKLQRHHLDDFVACYTANPRVETYNEDTARDGR 410 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +R+ +V L + DITW K + F LD L + Sbjct: 411 WRKYEVEDIL---------ARDKTSLDITWIKAGGEEEQFTLDELMTNI 450 >gi|269976584|ref|ZP_06183569.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris 28-1] gi|269935385|gb|EEZ91934.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris 28-1] Length = 469 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 109/544 (20%), Positives = 184/544 (33%), Gaps = 90/544 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + +WK + L D + + IL L+ + T + E+Y Sbjct: 2 KNQEIVAKLWKLCDVLRDDGITYHQYVTELTYIL---FLKMAKET--GTEDGIPEQY--- 53 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + +G L LG R ++ A S N Sbjct: 54 -----RWDVLRQKSGIELKRYYRDLLQYLGEEA-RGRIQEIYAGASTNI----------- 96 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++ L KI K+ ++ + N+YE L+ + +E GA + TPR Sbjct: 97 -----DEPKNLEKIIKSIDALDWFTAREE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHH 234 ++ + L P DP CGT GF+ A ++V + Sbjct: 150 LIDVMVRL----------TKPQPGELCNDPACGTFGFMIAAFDYVREHTDKFFDLNQDEA 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 G EL +TH + + ++ +E+ I G TLS K F Sbjct: 200 HFEIQKAFTGVELVHDTHRLALMNAMLHSIEAP--------ITLGDTLSPLGKHLKNFDV 251 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K ++ + S+ + FL H+ L+ GG Sbjct: 252 VLTNPPFGTKKGGERATRDD------------LTFPTSNKQLNFLQHIYRSLKS----GG 295 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF A IR+ ++ + I+ LPT +F+ + T + K Sbjct: 296 RAAVVLPDNVLF---ADGDGKRIRQDFMDKCNVHTILRLPTGIFYAQGVKTNVLFFQRGK 352 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 T++ K + DL T++ + G KR + + Y + EN + D R Sbjct: 353 TDKGNTK--RVWYYDLRTNMPSFG-KRTPLTREHFTDFETAYEA-ENREAVN--DERWSS 406 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 Y R LD + + I W P Q+ L + + Sbjct: 407 YSR---EEIATKEDTLDLGLMKQETETIDWNNYDPAEQASEAADLLEEASDLLRSLAKDL 463 Query: 535 FVKE 538 + + Sbjct: 464 TLAK 467 >gi|209526221|ref|ZP_03274751.1| N-6 DNA methylase [Arthrospira maxima CS-328] gi|209493318|gb|EDZ93643.1| N-6 DNA methylase [Arthrospira maxima CS-328] Length = 485 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 160/475 (33%), Gaps = 90/475 (18%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRL------ECALEPTRS 53 M+ + + +W L D + ++ + L+ L +C + R Sbjct: 1 MSTSNVTR-DIVAKLWNLCHILRDDGITYNEYVTELTYLLFLKMLAETGREDCLPQEYRW 59 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + + FY L + + I Sbjct: 60 SALDSREGLEQLE-------------FYRQLLLDLGN--QKKVADPVILAI--------- 95 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 F+ RL K L + ++ + N+YE L+ + +E G Sbjct: 96 ------FTDAQTRLRKPTNLKSLTDAIDRLDWFSAREE--GLGNLYEGLLEKNAAEKKSG 147 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A + TPR ++ L+ P + DP GTGGFL A +V + Sbjct: 148 AGQYFTPRPLIDCIVRLV----------QPQAGEVIQDPAAGTGGFLVAADQYVKNQTDD 197 Query: 234 --------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + G EL P+TH +C+ +++ +ES G +LS D Sbjct: 198 LYTLTQEQGRFQRNEAYRGLELVPDTHRLCLMNLMLHGIESVVM--------CGDSLSPD 249 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + + L+NPPFG K + F + S+ + F+ H+ Sbjct: 250 GESLGKADVILTNPPFGTKKGGGRPTRSD---------FSV-TAETSNKQLAFVEHIYRA 299 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GGRAA+VL + LF G ++R+ L++ + I+ LPT +F+ + T Sbjct: 300 LKP----GGRAAVVLPDNVLFEDNTG---RKLRQQLMDLCDLHTILRLPTGIFYAQGVKT 352 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVS 458 + + KT+ K A ++ N K R++ + + Sbjct: 353 NVLFFTRGKTDRGNTK-----AVWVYDLRANMISFGKTRLLTVADFAEFEAAFGD 402 >gi|254414483|ref|ZP_05028249.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420] gi|196178713|gb|EDX73711.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420] Length = 396 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 28/262 (10%) Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 ++DP CG GG + +A + +GQE T+ +C + IR Sbjct: 3 EPYQGRVFDPCCGLGGMFVQSEKFIAAHQGRID---DISIYGQESNETTYKLCRMNLAIR 59 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 ++ + + + D + + ++NPPF + + G Sbjct: 60 WIDGSNIKWNPEG-----SFLNDAHKDLKADFVIANPPFNDSDWGGE-------LLRKDG 107 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 R+ G+P + + + ++ H L G A VLS+ L GE EIR+ L+ Sbjct: 108 RWRYGVPPVGNANFAWVQHFLYHLAPT----GAAGFVLSNGSL--SLNTGGEGEIRQALV 161 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSN----RKTEERRGKVQLINATDLWTSIRNEG 438 E DL++ IV LPT LF+ T I LW LS K R+G+V I+A++L + Sbjct: 162 EADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRNRQGEVLFIDASELGYMVNR-- 219 Query: 439 KKRRIINDDQRRQILDIYVSRE 460 + R ++ +I Y + + Sbjct: 220 -RNRAFTEEDIGKIAGTYHTWK 240 >gi|291167082|gb|EFE29128.1| type I restriction-modification system, M subunit [Filifactor alocis ATCC 35896] Length = 503 Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 175/468 (37%), Gaps = 63/468 (13%) Query: 9 ASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRL-ECALEPTRSAVREKYLAFG 63 + +W L D + + IL L+ + E +E T Y Sbjct: 4 QEIVQKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMMKEKDIEDTIEKNIVGYKDLK 60 Query: 64 GSNID-----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 N D E + S +L +L + E I F ++ + + Sbjct: 61 KKNEDGTITKNEQQEFLEKKKVAEYSWNTLVSLSGIELKKYYERIIHLFGEHCRGHIKSI 120 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 ++ +E+ L KI + + ++ + ++ + ++YE L+ + +E GA + Sbjct: 121 YHNARTN-IEEPKNLEKIIRTMNNLDWY--SIDEEGFGDLYEGLLEKNANEKKSGAGQYF 177 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231 TPR ++ + T L+ P + DP CGT GF+ A +V + Sbjct: 178 TPRVLIDVMTRLI----------QPKVGERCNDPACGTFGFMIAAKRYVNEHHDEFSLSK 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G EL +TH + + +I +ES+ I TLS + Sbjct: 228 EEYDFQKEKAFTGCELVSDTHRLALMNAMIHGIESE--------ILCADTLSNIGKSMSG 279 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPFG K ++ + S+ + FL H+ L++ Sbjct: 280 YDVVLTNPPFGTKKGGERATRDD------------FTFPTSNKQLNFLQHIYRSLKVDGK 327 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 RAA+VL + LF A ++IR L++ + I+ LPT +F+ + T + + Sbjct: 328 A--RAAVVLPDNVLF---ADGDGAKIREDLMDKCNLNMILRLPTGIFYAQGVKTNVLFFT 382 Query: 412 NR-KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + +E +V + + T++ + G K + + Y++ Sbjct: 383 RGTREKENTKEVWFYD---MRTNMPSFG-KTTPLKKEHFVDFEKAYLA 426 >gi|240146118|ref|ZP_04744719.1| type I restriction-modification system, M subunit [Roseburia intestinalis L1-82] gi|257201771|gb|EEV00056.1| type I restriction-modification system, M subunit [Roseburia intestinalis L1-82] Length = 477 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 110/549 (20%), Positives = 195/549 (35%), Gaps = 93/549 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + + +W L D + + IL L+ + T + EKY Sbjct: 2 TTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMAKET--GTEEQIPEKYHWD 56 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 K FYN LS LG T + I + Sbjct: 57 KLKAKSGVELKK-----FYNE---LLSELGDNGTGR------------IREI-----YQG 91 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +++ L KI ++ + + N+YE L+ + +E GA + TPR Sbjct: 92 AATNIDEPKNLEKIIATIDSLDWYSAREE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------- 233 ++ + T L+ P + DP CGT GF+ A +VA+ + Sbjct: 150 LIDVMTKLM----------KPQVGERCNDPACGTFGFMIAAHQYVAERTDNFFDIADADL 199 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 K G EL +TH + + ++ + + I G TLS + + Sbjct: 200 AKFEKEEAFTGCELVHDTHRLALMNAMLHDI--------AAPITLGDTLSNIGKSMHDYD 251 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L+NPPFG K ++ + F S+ + FL H+ L+ Sbjct: 252 LVLTNPPFGTKKGGERATRDD---------FTY---PTSNKQLNFLQHIYRSLKNNGKA- 298 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 RAA+VL + LF A +IR LL+ + I+ LPT +F+ + T ++ + Sbjct: 299 -RAAVVLPDNVLF---ADGDGEKIRLDLLDKCNLHTILRLPTGIFYAQGVKTNVFFFTRG 354 Query: 414 KTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 KT++ K V + + + + + G K + + + Y +G S+ + + Sbjct: 355 KTDKGNTKEVWIYDLRN---DMPSFG-KTNPLKPEHFDDFIACY---ADGDLSKRKETYS 407 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRK-LSPLHQSFWLDILKPMMQQIYPYGW 531 + R I D + DITW K S ++L + ++ Sbjct: 408 EENPNGRW----RKFSIQDILARDKTSLDITWMKTESDTDNYTLAELLDQIKEKSQNIAK 463 Query: 532 AESFVKESI 540 A S +++ I Sbjct: 464 AVSELEQLI 472 >gi|229195091|ref|ZP_04321866.1| N-6 DNA methylase [Bacillus cereus m1293] gi|228588320|gb|EEK46363.1| N-6 DNA methylase [Bacillus cereus m1293] Length = 484 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 93/485 (19%), Positives = 180/485 (37%), Gaps = 83/485 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ + EK + Sbjct: 2 NNQEIVQKLWNLCNVLRDDGITYQQYLTELTYIL---FLKMMN-----------EKGNSS 47 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFD 119 +++E + EY +L S + + + + + +I Sbjct: 48 VEDRVNIEHVI---------PEEYRWESLVSREGIELKEHYQRLLLELGSSDNSILRQIY 98 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 ++ + + + L KI K+ ++ + + ++YE L+ + SE GA + T Sbjct: 99 ADASTS-ISEPKNLEKIIKSIDNLDWYNAEKE--GLGDLYEGLLEKNASETKSGAGQYFT 155 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233 PR ++ + L+ P + DP GT GF+ A ++ + Sbjct: 156 PRVLIDVMVKLV----------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDP 205 Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G EL +TH + + L+ +E +QG TLS + K Sbjct: 206 EQAEFQKTEAFTGMELVKDTHRLALMNALLHGIEGRL--------EQGDTLSSNGKWIKN 257 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F L+NPPFG K ++ + + S+ + FL + N L+ N Sbjct: 258 FDVILTNPPFGTKKGGERATRDD------------LTFETSNKQLNFLQLIYNALKDDGN 305 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 RAA+VL + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 306 A--RAAVVLPDNVLFEGGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 360 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE----NGKFSRM 467 KT++ K + DL T++ + G KR + + + + Y + + + + Sbjct: 361 REKTDKNSTK--EVWVYDLRTNMPSFG-KRTPLTEANFEEFMKAYHAEKRSNVEDERWNV 417 Query: 468 LDYRT 472 Sbjct: 418 FTREE 422 >gi|94272596|ref|ZP_01292153.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93450073|gb|EAT01432.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 480 Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 100/478 (20%), Positives = 162/478 (33%), Gaps = 71/478 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHT-DFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64 L +W A L +G I L+ + R + ++ A Sbjct: 4 EQLVAKVWNYAHVLR---DQGISYGDYIEQITYLLFLKM-----DQERQELLDEASAI-P 54 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 G ++L L L I F + Sbjct: 55 PQWSWGQLANKDGDELELQYRHTLENL---AREEGLIGTI---------------FRKSQ 96 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +L L ++ E + V IYE L+ R SEV GA + TPR V+ Sbjct: 97 NKLSDPAKLKRVVSLI-DTEGPWIGLGVDVKGEIYEGLLERNASEVKSGAGQYFTPRPVI 155 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILV 241 + +P + ++ DP CGTGGFL A +H+ + + Sbjct: 156 ETIVKCV----------NPRIGESVCDPACGTGGFLLAAYDHMKNQSQDRERLRALRHTA 205 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 G ++ E +C + + L + ++Q L+ D G RF+ L+NPPF Sbjct: 206 FSGLDIVDEVVRLCAMNLYLHGL-----GNGGSPVEQRDALAGD--NGHRFNVVLTNPPF 258 Query: 302 GKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 GKK + AV E ++ E F S+ FL H+ L GRA Sbjct: 259 GKKSSYKVVGEDGAVTSEREHYEREDFKFTT---SNKQFNFLQHIMTIL----EAHGRAG 311 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL + LF +GE IR+ LLE ++ LPT +++ + + R Sbjct: 312 VVLPDNVLFEAG-RAGEG-IRKRLLEGFNFHTLLRLPTGIWYSPGVKANVLFFDKRPASR 369 Query: 418 RRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +VQ ++ N K K + + + Y R+ + R Y+ Sbjct: 370 ---EVQ-TRELWVYDLRTNIHKTLKTKRLTHADFDDFIHCYHQRKETERFRRFSYQEL 423 >gi|266619617|ref|ZP_06112552.1| type I restriction-modification system, M subunit [Clostridium hathewayi DSM 13479] gi|288868819|gb|EFD01118.1| type I restriction-modification system, M subunit [Clostridium hathewayi DSM 13479] Length = 471 Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 86/464 (18%), Positives = 157/464 (33%), Gaps = 83/464 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + + +W L D + + IL L+ + E+ Sbjct: 2 NTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------AKETGVEEQ--- 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + V +G L+ LG T + I + Sbjct: 49 IPEEYRWDCLVSKSGMELRRYYRELLNYLGEECTGR------------IQEI-----YQG 91 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +++ L KI ++ + + N+YE L+ + +E GA + TPR Sbjct: 92 AATNIDEPKNLEKIITAIDKLDWYSAKEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHK 235 ++ + L+ P + DP CGT GF+ A +V + + Sbjct: 150 LIDVMVRLM----------KPQVGERCNDPACGTFGFMIAADKYVKEHNDFWGISADLAE 199 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL ETH + + ++ +E I TLS K + Sbjct: 200 FQHKEAFTGCELVHETHRLALMNAMLHDIEG--------QIMLADTLSNAGKQLKGYDLV 251 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG + ++ + + S+ + FL H+ L+ R Sbjct: 252 LTNPPFGTEKGGERATRDD------------FVFSTSNKQLNFLQHIYRSLKPNGKA--R 297 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+VL + LF A IR L+E + ++ LPT +F+ + T + + T Sbjct: 298 AAVVLPDNVLF---ADGDGERIRVDLMERCNLHTVLRLPTGIFYAQGVKTNVLFFTRGTT 354 Query: 416 EERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 ++ K V + L T++ + G K + + Y + Sbjct: 355 DKDNTKEVWFYD---LRTNMPSLG-KTNPLKTEHFADFEKAYEA 394 >gi|119357295|ref|YP_911939.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] gi|119354644|gb|ABL65515.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] Length = 495 Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 91/493 (18%), Positives = 170/493 (34%), Gaps = 75/493 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T + +S+ + +W L +G + T L L Sbjct: 1 MTNTPSSIVSKVWSFCHVLRDSGVS--YGDYLEQLTFLIFL------------------- 39 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + E + SEY+ L + ++ + + + Sbjct: 40 --KMADEYTRPPYNRTIDIPSEYTWPKLKAKRGAE----LEVLYARLLRDLGQKPGMLGQ 93 Query: 124 I-----ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 I ++ +LYK+ V IYE L+ + + GA + Sbjct: 94 IFLKAQNKIADPAMLYKVIDMIDKESWVMMGAD--VKGEIYEGLLEKNAEDTKSGAGQYF 151 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HH 234 TPR ++ + + P +T+ DP CGTGGF A + + Sbjct: 152 TPRALIEIMVKCV----------RPEPRKTIGDPACGTGGFFLKAYDFITTRYKLDRDEK 201 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + G E+ P T +C+ M + + + L D G R+ Y Sbjct: 202 EFLKHRTFGGNEIVPGTRRLCLMNMFLHNIGELDGNVAVSS---TDALVAD--NGVRYDY 256 Query: 295 CLSNPPFGKKWEK--DKDAVEKEHKNGELGR--FGPGLPKISDGSMLFLMHLANKLELPP 350 L+NPPFGKK D E+E ++ R F ++ + FL H+ L++ Sbjct: 257 VLTNPPFGKKSSMTFTNDEEEQEKESLVYNRQDFWAIT---ANKQLNFLQHIHTILKVY- 312 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+AA+VL + LF G AG +R+ LLE + I+ LPT +F+ + ++ Sbjct: 313 ---GQAAVVLPDNVLFEGGAG---ELVRKKLLETTELHTILRLPTGIFYAQGVKANVFFF 366 Query: 411 S--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSR 466 + +V + + + + K+ + ++ ++ Y +R K + Sbjct: 367 DVMPADKDPWTREVWFYD----YRTNVHHTLKKSPLKASDLQEFVECYNPANRHKRKETW 422 Query: 467 MLDYRTFGYRRIK 479 + +R+ Sbjct: 423 SQENPEGRWRKYT 435 >gi|313205416|ref|YP_004044073.1| site-specific DNA-methyltransferase (adenine-specific) [Paludibacter propionicigenes WB4] gi|312444732|gb|ADQ81088.1| Site-specific DNA-methyltransferase (adenine-specific) [Paludibacter propionicigenes WB4] Length = 491 Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 97/535 (18%), Positives = 182/535 (34%), Gaps = 79/535 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 + +S+ + +W L +G + L L+ + +P + Sbjct: 2 TTSSIVSKVWSFCNPLRDVGVG--YGDYLEQLTYLLFLKMADEYSKPPHNRKLN------ 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 EY+ +L + + + S K I F Sbjct: 54 ------------------IPKEYNWESLTGVKGAELELHYATLLRELSTQ-KGILGQI-F 93 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + +++ +L KI + + V +IYE L+ + +V GA + TP Sbjct: 94 TKSQNKIQDPAMLAKIIDMIDSEQWL--VMGADVKGDIYEKLLEQNAQDVKSGAGQYFTP 151 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R ++ + P ++T+ DP CGTGGF A +++ K Sbjct: 152 RPLIRAMVECI----------QPQPLKTIADPACGTGGFFLAAYDYLVANNKLDKDQNKF 201 Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G E+ T + + M + + + I L + + Y L Sbjct: 202 LKLETFYGNEIVASTRRLALMNMFLHNIGDIDSDNF---ISPADALI--AASSTTYDYVL 256 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFGKK + E E + + R S+ + F+ H+ + L+ G Sbjct: 257 ANPPFGKKSSQTFTNEEGEQEKDDLTYNRQDFWAT-TSNKQLNFVQHIRSMLKTT----G 311 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 AA+V+ + LF G AG +R+ LLE + I+ LPT +F+ + + N+ Sbjct: 312 MAAVVVPDNVLFEGGAG---ETVRKKLLETTDLHTILRLPTGIFYANGVKANVIFFDNKP 368 Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + +V + + + + + K+ +N D + + Y + Sbjct: 369 ASKTPWTKEVWVYD----YRTNVHHTLKKNPLNIDVLKDFIACYNP------ANRFKRTE 418 Query: 473 FGYRRIKVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 Y F D+ + DITW K L L + + I Sbjct: 419 T-YNAETNPEGKWRKFSYDEIVARDKTSLDITWLKDKSLADLDNLPDPEDLATDI 472 >gi|94265469|ref|ZP_01289219.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93454011|gb|EAT04352.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 480 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 101/480 (21%), Positives = 162/480 (33%), Gaps = 69/480 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGGS 65 L +W A L +G I L+ + R + + A Sbjct: 4 EQLVAKVWNYAHVLRDQGVS--YGDYIEQITYLLFLKM-----DQERQELLGEASAI-PP 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 G ++L L L I F + Sbjct: 56 QWSWGQLANKDGDELELQYRHTLENL---AREEGLIGTI---------------FRKSQN 97 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L L ++ E + V IYE L+ R SEV GA + TPR V+ Sbjct: 98 KLSDPAKLKRVVSLI-DTEGPWIGLGVDVKGEIYEGLLERNASEVKSGAGQYFTPRPVIE 156 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILVP 242 + +P + ++ DP CGTGGFL A +H+ + + Sbjct: 157 TIVKCV----------NPQIGESVCDPACGTGGFLLAAYDHMKNQSQDRERLRALRHTAF 206 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 G ++ E +C + + L + ++Q L+ D G RF+ L+NPPFG Sbjct: 207 SGLDIVDEVVRLCAMNLYLHGL-----GNGGSPVEQRDALAGD--NGHRFNVVLTNPPFG 259 Query: 303 KKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 KK + AV E ++ E F S+ FL H+ L GRA + Sbjct: 260 KKSSYKVVGEDGAVTSEREHYEREDFKFTT---SNKQFNFLQHIMTIL----EAHGRAGV 312 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VL + LF +GE IR+ LLE ++ LPT +++ + + R Sbjct: 313 VLPDNVLFEAG-RAGEG-IRKRLLEGFNFHTLLRLPTGIWYSPGVKANVLFFDKRPASR- 369 Query: 419 RGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 +VQ ++ N K K + + + Y R+ + R Y+ R Sbjct: 370 --EVQ-TRELWVYDLRTNIHKTLKTKRLTHADFDDFIHCYHKRQETERFRRFSYQELAKR 426 >gi|302874006|ref|YP_003842639.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium cellulovorans 743B] gi|307689745|ref|ZP_07632191.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium cellulovorans 743B] gi|302576863|gb|ADL50875.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium cellulovorans 743B] Length = 472 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 90/547 (16%), Positives = 180/547 (32%), Gaps = 93/547 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + + +W L D + + IL L+ + + Sbjct: 2 NTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMAKETGAEDK---------- 48 Query: 63 GGSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + +G +FY + + + I + Sbjct: 49 LPQGYKWDDLKTKSGIELKTFY-------------------KELLNHLGEETTGIVQQI- 88 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + +E+ L KI G++ + + N+YE L+ + SE GA + T Sbjct: 89 YQGSATNIEEPKNLEKIITTIDGLDWYSAKEE--GLGNLYEGLLEKNASEKKSGAGQYFT 146 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233 PR ++ + L+ P DP GT GF+ A +++ + + Sbjct: 147 PRVLIDVMVKLI----------DPRPGEKCNDPAAGTFGFMIGADHYLKEKTDNYFDLDT 196 Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G EL ETH + + ++ +E NI G TL+ + Sbjct: 197 DLAEFQRTKAFSGCELVHETHRLALMNAMLHGIEG--------NIILGDTLTNVGKQMNQ 248 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 LSNPPFG K ++ + S+ + FL H+ L+ Sbjct: 249 LDVVLSNPPFGTKKGGERATRDD------------LTYMTSNKQLNFLQHIYRSLKADNK 296 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 RAA+VL + LF G ++IR L++ + I+ LPT +F+ + T + + Sbjct: 297 A--RAAVVLPDNVLFQEGDG---TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 351 Query: 412 NRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 K ++ K V + T++ + G K + + + Y + + + + + Sbjct: 352 RGKEDKGNTKEVWFYDLR---TNMPSFG-KTNPLKETHFEDFIKAYTA--DNREAVEDER 405 Query: 471 RTFGYRRIKVLRPLRMSF-ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 R + + ++ + E + + + + +M I Sbjct: 406 WNKFTREQIKEKNDNLDLGLIKDDSILDYEDLPDPIESAEEAVAKLEEATDLLMSVIKEL 465 Query: 530 GWAESFV 536 ES Sbjct: 466 RALESEE 472 >gi|154245044|ref|YP_001416002.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2] gi|154159129|gb|ABS66345.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2] Length = 486 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 152/469 (32%), Gaps = 78/469 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 T S + +W L + + + T L L LE T + Sbjct: 1 MTSSTTDIVAKLWSLCHVLRD--DGVTYNEYVTELTFLLFL-KMLEETG------HEERL 51 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 K G + + L LG + L I F+ Sbjct: 52 PEGWRWGLLAKKEGMDQLDYYKAMLLALGKA--PDKLVGAI---------------FTDA 94 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +L K L + + ++ + +YE L+ + ++ GA + TPR + Sbjct: 95 QTKLRKPTNLKALTSSIDLLDWFSAREE--GLGTLYEGLLEKNAADKKSGAGQYFTPRPL 152 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235 + L+ P + DP GT GFL A ++ D Sbjct: 153 IDCIVRLM----------KPQPGEIVQDPAAGTAGFLVAADRYIKDRTDDLFELTEAQGF 202 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL P+TH +C+ +L+ +E ++ TLS D + H Sbjct: 203 FQRNNAFVGAELVPDTHRLCLMNLLLHGIEG--------GVESMDTLSPDGEGLPKAHLI 254 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG K + F S+ + F+ H+ L GGR Sbjct: 255 LTNPPFGTKKGGGRPTRTD---------FSV-TADTSNKQLAFVEHIVRSLRP----GGR 300 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+V+ + LF G +R WL+E + I+ LPT +F+ + T + Sbjct: 301 AAVVVPDNVLFEDNTG---RRLRSWLMELCDLHTILRLPTGIFYAQGVKTNVLFFRRGTN 357 Query: 416 EERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENG 462 ++ I A ++ N K R + Y NG Sbjct: 358 DKAN-----IKAVWVYDMRANMPAFGKTRPLTIADFAAFEAAYGDDPNG 401 >gi|228472619|ref|ZP_04057379.1| type I restriction enzyme EcoKI M protein [Capnocytophaga gingivalis ATCC 33624] gi|228276032|gb|EEK14788.1| type I restriction enzyme EcoKI M protein [Capnocytophaga gingivalis ATCC 33624] Length = 472 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 101/535 (18%), Positives = 179/535 (33%), Gaps = 89/535 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W L D + + E T + Sbjct: 2 NNQEIVAKLWALCNVLRDDGITYHQY---------------VTELTYILFLKMAKETNSE 46 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSS 122 E+ Y TL S + + E + + + ++ + Sbjct: 47 GEIPEA--------------YRWDTLVSKDGIPLKKFYEELLEHLGEQCRGRIQEIYAGA 92 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +E+ L KI K ++ + + N+YE L+ + +E GA + TPR Sbjct: 93 KSN-IEEPKNLEKIIKTIDALDWYSAKEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234 ++ + T L P DP CGT GF+ A ++ D Sbjct: 150 LIDVMTEL----------THPQAGERCNDPACGTFGFMIAADRYIKDQTDDLFSLSQEMQ 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + G EL ETH + + ++ ++ IQ G TLS + Sbjct: 200 EFQINEAFSGGELVHETHRLALMNAMLHDIKGP--------IQLGDTLSSLGKQMTGYDV 251 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K ++ + S+ + FL H+ L+ GG Sbjct: 252 VLTNPPFGTKKGGERATRDD------------LTFPTSNKQLNFLQHIYRSLK----RGG 295 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF GE IR+ L+E + I+ LPT +F+ + T + Sbjct: 296 RAAVVLPDNVLFVDG--DGER-IRKDLMEKCNLHTILRLPTGIFYAQGVKTNVLFFERGL 352 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRMLDYRT 472 ++ +G Q + DL +++ N G K + + + + Y R + + + Sbjct: 353 SD--KGNTQEVWFYDLRSNMPNFG-KTNPLKREHFDEFVQCYQRDDRHKRQETYSEENPQ 409 Query: 473 FGYRRIKVLR---PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 +RR + S L DI +L + I + + Q Sbjct: 410 GRWRRYTYEEICARDKTSLDLSWIRQGEETEDIPLSELIATMEEKAAKITEAIAQ 464 >gi|323141887|ref|ZP_08076748.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067] gi|322413634|gb|EFY04492.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067] Length = 470 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 90/478 (18%), Positives = 162/478 (33%), Gaps = 92/478 (19%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ + E+ Sbjct: 2 NTQEIVAKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------AKETGSEEN--- 48 Query: 63 GGSNIDLESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNLESYI-ASFSDNAKAIFEDF 118 + + G FY NL Y+ + + I Sbjct: 49 IPEGYRWDDLLARKGLELKGFY----------------KNLLDYLGERCTGRIQEI---- 88 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + +++ L KI + ++ + N+YE L+ + +E GA + Sbjct: 89 -YKGAATNIDEPKNLEKIIRTIDELDWFSAKEE--GLGNLYEGLLEKNANEKKSGAGQYF 145 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233 TPR ++ + T L+ +P DP CGT GF+ A N V + + Sbjct: 146 TPRVLIDVMTRLV----------APKAGERCNDPACGTFGFMIAASNFVREQTNDFFDLD 195 Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + G EL +TH + + ++ + I G TLS + Sbjct: 196 EETAEFEYTQAFTGCELVHDTHRLALMNAMLHDI--------QSKIILGDTLSNVGKEMQ 247 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + L+NPPFG K ++ + F S+ + FL H+ L+ Sbjct: 248 GYDVVLTNPPFGTKKGGERATRDD---------FTY---PTSNKQLNFLQHIYRSLKADG 295 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 RAA+VL + LF A IR L++ + I+ LPT +F+ + T + Sbjct: 296 KA--RAAVVLPDNVLF---ADGDGERIRVDLMDKCNLHTILRLPTGIFYAQGVKTNVLFF 350 Query: 411 SNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + KT++ K V + L T++ + G K + Y + + K + Sbjct: 351 TREKTDKDSTKAVWFYD---LRTNMPSFG-KTNPLKASDFAGFEAAYTAEDRSKVADE 404 >gi|268323783|emb|CBH37371.1| putative type I restriction enzyme, N-6 DNA methylase family [uncultured archaeon] Length = 452 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 85/469 (18%), Positives = 162/469 (34%), Gaps = 69/469 (14%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 MT ++ + +W A+ L D +G E+ Sbjct: 1 MTNT----ETIISKVWSFADVLRDDGVG--YGDY---------------------LEQLT 33 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDF 118 + E Y+ ++ S Y+ + A I Sbjct: 34 YLLFLKLADEYTKPPYNRKLPIPDGYNWESMLSKRGAELDSHYVKLLRELGKASGILGQI 93 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F+ + +++ LY++ + + IYE L+ + +V GA + Sbjct: 94 -FTKSQNKIQDPAKLYRVIDMINNENWSLMGTD--LKGKIYEGLLEKNAEDVKSGAGQYF 150 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGS 232 TPR ++ + P +T+ DP CGTGGF + + + Sbjct: 151 TPRALIMAMVECI----------HPAPGKTICDPACGTGGFFLASYDFLCNPANYRLDKE 200 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + G E+ +C+ M + + D I +L D +G R+ Sbjct: 201 QKEFLKDRTFSGNEIVASARRMCLMNMFLHNI---GEIDAESPISSADSLVSD--SGARY 255 Query: 293 HYCLSNPPFGKKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 Y L+NPPFGKK + ++E +N R S+ + FL H+ L+ Sbjct: 256 DYVLTNPPFGKKSSMTFTTEEGKQEKENLVYNRQDFWAT-TSNKQLNFLQHIHTLLKSD- 313 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G AA+VL + LF G AG +R+ +LE + I+ L T +F++ + + Sbjct: 314 ---GHAAVVLPDNVLFEGGAG---ETVRKNMLETTNLHTILRLSTGIFYKQGVKANILFF 367 Query: 411 SNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 N+ + +V + + + + + K+ + + + + Y Sbjct: 368 DNKPASKEPWTKEVWIYD----FRTNVHFTLKKNPLKFEDMKDFIACYN 412 >gi|89891080|ref|ZP_01202588.1| type I restriction-modification enzyme, M subunit [Flavobacteria bacterium BBFL7] gi|89516724|gb|EAS19383.1| type I restriction-modification enzyme, M subunit [Flavobacteria bacterium BBFL7] Length = 495 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 107/575 (18%), Positives = 188/575 (32%), Gaps = 97/575 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 SA +AN +W L D + + IL L+ L + + Sbjct: 2 SADEIANKLWNLCNVLRDDGVTYHQYLNELTYIL---FLK-----LTEVKD-----FEEH 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDF 120 + FV+ N + I+ S + K I + Sbjct: 49 IPAEYRWRGFVEEHDN---NEAFERYKK---------FLVSISGVTTSPSIKEI-----Y 91 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ L K + ++ ++ + + VM +IYE L+ + E GA + TP Sbjct: 92 NNASTSLRKPVNFNTLVQSIEKLDWYEEN-DRDVMGDIYESLLEKNAGEKKSGAGQYFTP 150 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------S 232 R ++++ T LL +P + DP GT GF+ A ++ Sbjct: 151 RPLINIMTQLL----------APKLGERWNDPAAGTFGFMIAADEYLRSKYENYYALRDK 200 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 K G EL + H + + + +ES+ I G TL++ + Sbjct: 201 DRKFQKEQAFSGVELVGDAHRLALMNARLHGMESE--------IILGDTLTEMGKNLNGY 252 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPFG K + + + S+ + FL H+ L+ Sbjct: 253 DGVLANPPFGTK-KGGEKPTRDDF-----------TFPTSNKQLNFLQHIYRSLKKDGKA 300 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 RAA+VL + LF G +IRR L++ + I+ LPT +F+ + T + + Sbjct: 301 --RAAVVLPDNVLFEDGDGQ---KIRRDLMDKCDLHTILRLPTGIFYAAGVKTNVLFFTR 355 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 KTE+ K + N KR + Y + + Sbjct: 356 GKTEKNNTK-----GIWFYDMRTNVPNYGKRTPFTRTAFADFVKAYTGGK------TIAD 404 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 Y RP + +E D W ++ + D L + Sbjct: 405 LEKNYDGSIANRPQDGHPEPVEGA---VENDSRWNYITREVIASKNDSLDLGLIADDSVS 461 Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 AE E ++ ++ A + + A I G Sbjct: 462 KAEDLG-EPVEIATEALNELSAIQKQLKAMIKELG 495 >gi|126667032|ref|ZP_01738007.1| N-6 DNA methylase [Marinobacter sp. ELB17] gi|126628438|gb|EAZ99060.1| N-6 DNA methylase [Marinobacter sp. ELB17] Length = 498 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 161/463 (34%), Gaps = 73/463 (15%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + + +W L D +G + L L+ + Sbjct: 8 IISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMAD--------------------EY 45 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIA 125 + + G +Y TL + Y+ K + F+ Sbjct: 46 AKPPYNRDVG----IPEQYRWHTLKTKKGAELEVLYVELLRALGTQKGMLGQI-FTKAQN 100 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +++ LY++ + V +IYE L+ + + GA + TPR ++ Sbjct: 101 KIQDPAKLYRLIDMVDSTQWVIMGAD--VKGDIYEGLLEKNAEDTKSGAGQYFTPRALIR 158 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------PI 239 L P +T+ DP CGTGGF A + + D ++ Sbjct: 159 AMVDCL----------RPEPGKTIADPACGTGGFFLAAYDFLTDTQNYQLDKAQKSFIKH 208 Query: 240 LVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G E+ T +C+ M + + E D +S N L + + F Y L+N Sbjct: 209 DTFFGNEIVANTRRMCLMNMFLHNIGEIDGDSLVSPN----DALV--AASPQSFDYVLAN 262 Query: 299 PPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 PPFGKK E E + + R S+ + F+ H+ + L+ G+A Sbjct: 263 PPFGKKSSMSFTNEEGEQETDDLTYNRQDFWAT-TSNKQLNFVQHIRSMLKTT----GKA 317 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-- 414 A+V+ + LF G AG IRR LL+N + I+ LPT +F+ + + N+ Sbjct: 318 AVVVPDNVLFEGGAG---ETIRRKLLKNTDLHTILRLPTGIFYAHGVKANILFFDNQTAS 374 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 +V + + + + K++ + + + Y Sbjct: 375 PSPWTKEVWFYD----YRTNVHHTLKKKPLRYEDMADFIACYN 413 >gi|332969661|gb|EGK08677.1| type I restriction-modification system DNA-methyltransferase [Desmospora sp. 8437] Length = 474 Score = 200 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 86/483 (17%), Positives = 160/483 (33%), Gaps = 87/483 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ + + + A Sbjct: 2 NTQEIVQKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMM-------KER---EEEAS 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + G + L+ LG+ + I + + Sbjct: 49 IPEEYRWDRLTSLHGEELHQHYRRLLTDLGT-----------QGRDPLVQQI-----YRN 92 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +++ L KI ++ G++ + + N+YE L+ + SE GA + TPR Sbjct: 93 ASTNIDEPKNLEKIIRSIDGLDWYSAREE--GLGNLYEGLLEKNASEKKSGAGQYFTPRP 150 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHH 234 ++++ L+ P DP GT GF+ A +++ + Sbjct: 151 LINVMVKLI----------DPRPGEKCNDPAAGTFGFMIAADHYLKEKYDEYYDLEPEER 200 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 G EL ETH + + + +E I G TLS Sbjct: 201 TFQKYEAFTGCELVQETHRLALMNARLHGIEG--------KIHLGDTLSSLGKEMGDMDV 252 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K ++ + F ++ + FL H+ L+ Sbjct: 253 ILTNPPFGTKRGGERPTRDD---------FTY---PSTNKQLNFLQHIYRALKANGKA-- 298 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G IR L++ + I+ LPT +F+ + T + Sbjct: 299 RAAVVLPDNVLFQDGDG---KSIRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFERGT 355 Query: 415 TE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLD 469 T+ +V + L T++ + G KR + + + Y + R + Sbjct: 356 TDIGNTEEVWFYD---LRTNMPSFG-KRNPLTEAHFDGFIQAYTASDRSRVQDERWSRFT 411 Query: 470 YRT 472 Sbjct: 412 REE 414 >gi|325989583|ref|YP_004249282.1| putative type I restriction-modification system DNA methylase, HsdM [Mycoplasma suis KI3806] gi|323574668|emb|CBZ40321.1| probable type I restriction-modification system DNA methylase, HsdM [Mycoplasma suis] Length = 614 Score = 200 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 105/596 (17%), Positives = 205/596 (34%), Gaps = 75/596 (12%) Query: 8 AASLANFIWKNAEDLWGDF--KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + LA +W +L F K +++ K L L+ ++ + T + ++ G Sbjct: 1 MSDLAKSLWNFCNELRVYFHLKQSEYYKPALGALFLKYMDVNYQKTLKILEKEMPIIEGV 60 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGS----------TNTRNNLESYIASFSDNAKAIF 115 + + + E S + S N S + DNA + Sbjct: 61 RVSPKKYDFEKKGVIMLPEEAQFSKIISLPEDVTLAKIKNIDGEEMSSLGEVLDNAMKLI 120 Query: 116 EDFD--FSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 E F + + + L + K F ++ + + +YE+ + F E Sbjct: 121 ERESELFEGALFKEYKKIRDNTLRDLLKVFDREDVSDN---SDKLGEVYEYFLGHFSLEE 177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 F TP+ +V++ +L DP CG+GG ++ + Sbjct: 178 KGDEGVFFTPKSLVNMIVNIL-----------QPKGGKALDPFCGSGGMFVGIKKYM-ER 225 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + V G EL P +C + + ++ + I+Q +T DL + Sbjct: 226 ETDSTCNQDFVFRGYELLPANVNICNMNLFMHNIQINSV------IKQCNTFENDLLDLE 279 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLAN 344 + Y LSNPPF K + A GR LP+ + + L + + + Sbjct: 280 GKCDYVLSNPPFCVKGVNIERAKRA-------GRIPFALPRGNNESFTNADYLCIQYFYS 332 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TN 402 L G N A +G+ EIR+ ++E ++ I+ + F T Sbjct: 333 YLNDRGKAGFVMG--------KNSLASTGDKEIRKQIIETKHVDIIIGVADKFFQSGFTG 384 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR--IINDDQRRQILDIYVSRE 460 LW + +K EE+R K+ I+A++ ++ +++ K+ ++ +Y + Sbjct: 385 -EVCLWFFNKQKIEEQRDKILFIDASNYFSQVKDNPKQNTWSYWQSKNLIAVVWLYRGQV 443 Query: 461 NG------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 ++ LD + V P +++ G+ +LS + Sbjct: 444 EKYQKLLEEYREALDKYAKEFN---VQIPESGNYLDAFKGVGEKLIVEGEEELSKADKKD 500 Query: 515 WLDILKPMMQQIYPYGWAESFVKE--SIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 + + + ++ + A S VKE I+S K + A I D Sbjct: 501 KNRMKEELDKKWERFEEALSVVKEYDWIRSKFKKGIYRDVPGLCKAADIKEVMEMD 556 >gi|149200913|ref|ZP_01877888.1| type I restriction-modification system DNA methylase [Roseovarius sp. TM1035] gi|149145246|gb|EDM33272.1| type I restriction-modification system DNA methylase [Roseovarius sp. TM1035] Length = 700 Score = 200 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 156/467 (33%), Gaps = 62/467 (13%) Query: 15 IWKNAEDLW--GDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGGSNID 68 +WK A+DL ++ I+ LR R AL + + + Sbjct: 16 LWKMADDLRANSGLASNEYFMPIMGLLFLRQATNRYYAALSAIEAD--KAAGKMPDRPLV 73 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIAR 126 F + + Y + L + + + + + F R Sbjct: 74 DADFRRRRAMLLPEAARYDVILDMPK--GGQLGAALTAAMEEVEKHFPPLAGQLPKDYER 131 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + LL + + F L V IYE+ + F + + +F TP +V Sbjct: 132 FDD-DLLESMMRKFDTEALRNA--SGDVFGRIYEYFLAEFSKQGAHDNGEFFTPPSIVQT 188 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ ++DP CG+GG + + + D G +G E Sbjct: 189 IVNVI-----------EPDHGIVFDPACGSGGMFVQSSHFIEDAGQDTMKRV--TFYGHE 235 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---TLSKDLFTG-KRFHYCLSNPPFG 302 T + + + L+ I+ G+ T KD + + ++NPPF Sbjct: 236 KNETTAKLAQINLAVHGLQGT--------IRAGNDAITYYKDPHELVGKCDFVMANPPFN 287 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRA 356 K R GLP K+S+ + L++ + + L N GRA Sbjct: 288 VDE-------VDADKVKGDKRLPFGLPGVNKAKKVSNANYLWMSYFYSYL----NENGRA 336 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT- 415 +V+SS AG E+ +R+ L+E ++ ++ + + F+ + LW K Sbjct: 337 GVVMSSQA---SSAGRDEAVVRQKLIETGAVDVMIDIRGNFFYTRTVPCQLWFFDRAKER 393 Query: 416 -EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 ER V +++A + + + I+ +Y + Sbjct: 394 DPERADHVLMLDARNNYRKVSRAIYDFAPEQQKNIAAIVWLYRGEAD 440 >gi|325973139|ref|YP_004250203.1| type I restriction-modification system, N-6 DNA methylase family protein [Mycoplasma suis str. Illinois] gi|323651741|gb|ADX97823.1| type I restriction-modification system, N-6 DNA methylase family protein [Mycoplasma suis str. Illinois] Length = 614 Score = 200 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 104/596 (17%), Positives = 204/596 (34%), Gaps = 75/596 (12%) Query: 8 AASLANFIWKNAEDLWGDF--KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + LA +W +L F K +++ K L L+ ++ + T + ++ G Sbjct: 1 MSDLAKSLWNFCNELRVYFHLKQSEYYKPALGALFLKYMDVNYQKTLKILEKEMPIIEGV 60 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGS----------TNTRNNLESYIASFSDNAKAIF 115 + + + E S + S N S + DNA + Sbjct: 61 RVSPKKYDFEKKGVIMLPEEAQFSKIISLPEDVTLAKIKNIDGEEMSSLGEVLDNAMKLI 120 Query: 116 EDFD--FSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 E F + + + L + K F ++ + + +YE+ + F E Sbjct: 121 ERESELFEGALFKEYKKIRDNTLRDLLKVFDREDVSDN---SDKLGEVYEYFLGHFSLEE 177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 F TP+ +V++ +L DP CG+GG ++ + Sbjct: 178 KGDEGVFFTPKSLVNMIVNIL-----------QPKGGKALDPFCGSGGMFVGIKKYM-ER 225 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + V G EL P +C + + ++ + I+Q +T DL + Sbjct: 226 ETDSTCNQDFVFRGYELLPANVNICNMNLFMHNIQINSV------IKQCNTFENDLLDLE 279 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLAN 344 + Y LSNPPF K + A GR LP+ + + L + + + Sbjct: 280 GKCDYVLSNPPFCVKGVNIERAKRA-------GRIPFALPRGNNESFTNADYLCIQYFYS 332 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TN 402 L G N A +G+ EIR+ ++E ++ I+ + F T Sbjct: 333 YLNDRGKAGFVMG--------QNSLASTGDKEIRKQIIETKHVDIIIGVADKFFQSGFTG 384 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR--IINDDQRRQILDIYVSRE 460 LW + +K EE+R K+ I+A++ ++ +++ K+ ++ +Y + Sbjct: 385 -EVCLWFFNKQKIEEQRDKILFIDASNYFSQVKDNPKQNTWSYWQSKNLIAVVWLYRGQV 443 Query: 461 NG------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 ++ LD + V P +++ + +LS + Sbjct: 444 EKYQKLLEEYREALDKYAKEFN---VQVPESGNYLDAFKEVGEKLIVEGEEELSKADKKD 500 Query: 515 WLDILKPMMQQIYPYGWAESFVKE--SIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 + + + ++ + A S VKE I+S K + A I D Sbjct: 501 KNRMKEELDKKWERFEEALSVVKEYDWIRSKFKKGIYRDVPGLCKAADIKEVMEMD 556 >gi|225155294|ref|ZP_03723787.1| type I restriction modification system, methyltransferase subunit [Opitutaceae bacterium TAV2] gi|224803901|gb|EEG22131.1| type I restriction modification system, methyltransferase subunit [Opitutaceae bacterium TAV2] Length = 413 Score = 200 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 162/467 (34%), Gaps = 72/467 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 +A+SL + +W L +G + L L+ Y Sbjct: 2 TASSLVSKLWNYCNILRD--DGLSYGDYVEQLTYLLFLKM-------EHEKSLPPYNKKS 52 Query: 64 --GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + VK+ G +L+ LG L F Sbjct: 53 QIPAGFSWSALVKLDGDDLETHYRITLTELGKCGGMLGLI------------------FR 94 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 +++ L ++ + E + V + YE L+ + ++V GA + TPR Sbjct: 95 KAQNKIQDPAKLRRLIADLIDKETWTS-LEADVKGDAYEGLLEKNAADVKGGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL- 240 ++ ++ +P +T+ DP CGTGGFL A +++A Sbjct: 154 ALIAAMVEVM----------APQPGQTICDPACGTGGFLLAAHDYLARPERKLDKEQKRF 203 Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 HG EL +C +++ + D + L + LS + L Sbjct: 204 LKNGTLHGVELVDSVTRLCAMNLMLHGIGGDSDKTLP--VTTRDALSG---KHGEYDIVL 258 Query: 297 SNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 +NPPFGKK ++ KE F S+ + FL H+ + L+ Sbjct: 259 ANPPFGKKSSVTIVNEEGESAKESLVINRDDFWA---STSNKQLNFLQHIFSILKQH--- 312 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GRAA+VL + LF G A GE+ IRR LL+ + ++ LPT +F+ + + Sbjct: 313 -GRAAVVLPDNVLFEGGA--GET-IRRQLLQQADVHTLLRLPTGIFYAQGVKANVLFFDK 368 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYV 457 + ++R ++ N+ K + + Y Sbjct: 369 KPANDKRPW---TEKLWIYDLRTNQHFTLKENPLKPADLTDFIACYG 412 >gi|150388683|ref|YP_001318732.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF] gi|149948545|gb|ABR47073.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF] Length = 472 Score = 200 bits (509), Expect = 7e-49, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 168/464 (36%), Gaps = 82/464 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ ++ + Sbjct: 2 NNQEIVAKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------SKETGTD---GQ 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + +K G L+ LG T + I +S Sbjct: 49 IPEDYRWDILIKKQGVELKRYYNELLNHLGEECTGR------------IREI-----YSG 91 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + + +E+ L KI + ++ + + N+YE L+ + +E GA + TPR Sbjct: 92 SRSNIEEPKNLEKIITSIDALDWYSAKEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHH 234 ++++ T L+ +P DP CGT GF+ A +V D Sbjct: 150 LINIMTQLI----------APQAGEKCNDPACGTFGFMIAADRYVKDHTDDLFDLSLKEQ 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + G EL +TH + + ++ +E I TLS K F Sbjct: 200 EFQKNKAFTGCELVHDTHRLALMNAMLHDIEG--------KILYADTLSNLGKAMKDFDV 251 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K ++ + S+ + FL H+ L+ Sbjct: 252 VLTNPPFGTKKGGERTTRDD------------LTYPSSNKQLNFLQHIYRSLKTNGK--S 297 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF A + IR L++ + ++ LPT +F+ + T + + K Sbjct: 298 RAAVVLPDNVLF---ADGDGASIRADLMDKCNLHTVLRLPTGIFYAQGVKTNVLFFTRGK 354 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 TE+ K + DL T++++ G K + + ++ + Y S Sbjct: 355 TEKNNTK--EVWVYDLRTNMQSFG-KTKALKEEHFEDFIKAYTS 395 >gi|281424445|ref|ZP_06255358.1| type I restriction-modification system, M subunit [Prevotella oris F0302] gi|281401431|gb|EFB32262.1| type I restriction-modification system, M subunit [Prevotella oris F0302] Length = 473 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 97/527 (18%), Positives = 174/527 (33%), Gaps = 81/527 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + SL +W A L G +TD+ + L+ + + E+ Sbjct: 1 MATNISTEQSLTKKVWNLATTLSGQGIGYTDYVTQLTYLLFLKM-----DAENEKLFEET 55 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + + +++ G E +L L ++NL I Sbjct: 56 SSI-PEGYRWSNLIELDGLDLIEQYEKTLKILSE---QDNLIGTI--------------- 96 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F+ +++K L K+ + + V IYE ++ + G + GA + T Sbjct: 97 FTKAQNKIDKPVYLKKVISMIDEEQWL--VMDGDVKGAIYEGILEKNGQDKKSGAGQYFT 154 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-- 237 PR ++ + P + T+ DP CGTGGFL A + + Sbjct: 155 PRPLIQAIVDCV----------QPKIGETVCDPACGTGGFLLAAYDCMKQQSQDKDKREF 204 Query: 238 -PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 HG + P + + + + +D I +L K+ L Sbjct: 205 LNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IACEDSLEKE--PDTLVDVIL 257 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG + D + + + FL H+ L+ GGRA Sbjct: 258 ANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHIMLMLK----AGGRA 302 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G AG IR+ LL + + I+ LPT +F+ + + + Sbjct: 303 AVVLPDNVLFEGGAG---ETIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFVKGQPT 359 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 + + + + + + + Y + + + R +R Sbjct: 360 K---DIWFYD----YRTDVKHTLATNKLRRHHLDDFVASYTANPRVETYKEDTARDGRWR 412 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + V D + DITW K + F LD L + Sbjct: 413 KYTVE---------DIIARDKTSLDITWIKAGGEEEQFTLDELMTNI 450 >gi|269838109|ref|YP_003320337.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745] gi|269787372|gb|ACZ39515.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745] Length = 507 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 103/557 (18%), Positives = 182/557 (32%), Gaps = 76/557 (13%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 T A + +W L +G + T L L+ A E T+ + Sbjct: 4 TNHAQQIVQRLWSYCNVLRD--DGLSYGDYVEQLTYLLFLKMAHEQTQEPW--NRPSPVP 59 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 D S + G + L L + F Sbjct: 60 EGYDWPSLLARDGDELETHYRHLLEEL--------------GRQPGMLGLI----FHKAQ 101 Query: 125 ARLEKAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +++ L ++ + + YE L+ + +V GA + TPR + Sbjct: 102 NKIQDPAKLRRLIVDLIDREQWM--VLGTDAKGATYEGLLEKNARDVKGGAGQYFTPRPL 159 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP- 242 + ++ P T+ DP CGTGGFL A N + + H Sbjct: 160 IQAIVDVM----------RPQPGETICDPACGTGGFLLAAHNSIVERYPHLDPEQRKHLK 209 Query: 243 ----HGQELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G E+ +C +L+ + P D+ ++ G +L + F L+ Sbjct: 210 LHALRGVEIVDSVTRLCAMNLLLHGVGPGPAEADIEPPVRTGDSL--NSAPSDHFDVVLT 267 Query: 298 NPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 NPPFG+K ++ E+E F S+ + F+ H+ + L++ Sbjct: 268 NPPFGRKSSVLVVNEEGQQEREALTVVREDFWATT---SNKQLNFVQHVKSLLKIH---- 320 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRAA+V+ + LF G A GE+ IRR LL+ + ++ LPT +F+ + + + Sbjct: 321 GRAAVVVPDNVLFEGGA--GET-IRRKLLQECDVHTLLRLPTGIFYAQGVKANVLFFDRK 377 Query: 414 KTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 E+ QL ++ N+ K + + + + + + R Sbjct: 378 PPREQPWTSQL----WIYDLRTNKHFTLKTKPLQRSDLDEFVACFNP----------ENR 423 Query: 472 TFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 P L ++ DI W K L L + I Sbjct: 424 HQRTPTWSEENPDGRWRAFSYDELIQRDKVNLDIFWLKDKSLEDGENLGDPDEIAADIVE 483 Query: 529 YGWAESFVKESIKSNEA 545 A E+I ++ A Sbjct: 484 DLRAALEEFETILADLA 500 >gi|317486936|ref|ZP_07945746.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6] gi|316921811|gb|EFV43087.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6] Length = 472 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 84/465 (18%), Positives = 162/465 (34%), Gaps = 86/465 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ + E A Sbjct: 2 TTQEIVAKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------AKETGTE---AA 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++ +G + + L+ L T + I + Sbjct: 49 IPETCRWDALAAKSGIELKHVYKQVLAELSENGTGR------------VREI-----YQG 91 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++ +++ L KI + + ++ + + N+YE L+ + +E GA + TPR Sbjct: 92 AVSNIDEPKNLEKIISSINALDWYSAQEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234 ++ + L+ P + DP CGT GF+ A ++ D Sbjct: 150 LIDVMVRLM----------KPQVGELCNDPACGTFGFMIAADRYLKDQTDDYFDLDEDQA 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 G EL +TH + + ++ +E + I TLS K + Sbjct: 200 AFQKQRAFTGCELVHDTHRLALMNAMLHGIEGE--------ILLADTLSTAGKAMKGYDL 251 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K ++ + F S+ + FL H+ L+ GG Sbjct: 252 VLTNPPFGTKKGGERATRDD---------FAFAT---SNKQLNFLQHIYRSLK----RGG 295 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF A IR L++ + ++ LPT +F+ + T + + + Sbjct: 296 RAAVVLPDNVLF---ADGDGGRIRADLMDKCTLHTVLRLPTGIFYAQGVKTNVLFFTRGQ 352 Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 ++ K V + T++ + G K + + + + Sbjct: 353 SDRGNTKEVWFYDLR---TNMPSFG-KTTPLKKEHFADFEAAFEA 393 >gi|301170025|emb|CBW29629.1| unnamed protein product [Haemophilus influenzae 10810] Length = 314 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 62/335 (18%), Positives = 121/335 (36%), Gaps = 31/335 (9%) Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 +YDP G+GGF + + + +GQE P T + M IR Sbjct: 3 EPYSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIR 59 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 ++ D + + + ++ K+ + ++NPPF + Sbjct: 60 GIDYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDP 106 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 R+ G P + + +L H+ L G+ A++L++ + + E EIR+ ++ Sbjct: 107 RWAYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAII 160 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 DL+E +VALP LF T I +W L+ K +R+G+V I+A + R Sbjct: 161 NADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LR 215 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEAD 501 D +I D + + S + + + + F+L E + Sbjct: 216 DFTADDIAKIADTLHAWQT---SDGYEDQAAFCKSATLEEIKNNDFVLTPGRYVGTAEQE 272 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + Q+ + + + + + Sbjct: 273 DDGVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 307 >gi|229542894|ref|ZP_04431954.1| N-6 DNA methylase [Bacillus coagulans 36D1] gi|229327314|gb|EEN92989.1| N-6 DNA methylase [Bacillus coagulans 36D1] Length = 476 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 89/484 (18%), Positives = 167/484 (34%), Gaps = 90/484 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 + + +W L + + + L L+ + + ++ + Sbjct: 2 NNQEIVQKLWNLCNVLRD--DGITYQQYVTELTYLLFLKMM-------KE---QETESAI 49 Query: 64 GSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + V G +FY +L Y+ S N + + Sbjct: 50 PEGYRWDDLVAKEGTELKTFY----------------QHLLLYL-GSSGN--EMLRHI-Y 89 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 S + + L KI K+ ++ + + N+YE L+ + SE GA + TP Sbjct: 90 SDAATSISEPKNLEKIIKSIDALDWYSAKEE--GLGNLYEGLLEKNASEKKSGAGQYFTP 147 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------- 233 R ++ + L+ P + DP GT GF+ A ++ Sbjct: 148 RVLIDVMVQLV----------DPKIGERCADPAAGTFGFMIAADRYLKQQTDDYFDLDPQ 197 Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + G EL +TH + + L+ +E I+ G +LS + K Sbjct: 198 MAEFQRKEAFSGMELVKDTHRLALMNALLHSMEGR--------IEHGDSLSNNGKWMKNL 249 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPFG K ++ + + S+ + FL + N L+ Sbjct: 250 DVILTNPPFGTKKGGERVSRDD------------LTFDTSNKQLNFLQLIYNALKDDGKA 297 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 RAA+VL + LF G ++IRR L+ + I+ LPT +F+ + T + + Sbjct: 298 --RAAVVLPDNVLFESGVG---AQIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTR 352 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRML 468 KT+ K + DL T++ + G KR + + Y + + + + Sbjct: 353 GKTDRDNTK--EVWVYDLRTNMPSFG-KRNQLTMAHFENFMKAYEAEDRSKVEDERWNVF 409 Query: 469 DYRT 472 Sbjct: 410 TREE 413 >gi|42779917|ref|NP_977164.1| type I restriction-modification system, M subunit [Bacillus cereus ATCC 10987] gi|42735835|gb|AAS39772.1| type I restriction-modification system, M subunit [Bacillus cereus ATCC 10987] Length = 484 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 88/485 (18%), Positives = 174/485 (35%), Gaps = 83/485 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ + EK + Sbjct: 2 NNQEIVQKLWNLCNVLRDDGITYQQYLTELTYIL---FLKMMN-----------EKGNSS 47 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFD 119 +++E + EY +L S + + + + + +I + Sbjct: 48 SEDRVNIEHVI---------PEEYRWESLVSREGIELKEHYQRLLLELGSSDNSILKQIY 98 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 ++ + + + L KI K+ ++ + + ++YE L+ + SE GA + T Sbjct: 99 ADASTS-ISEPKNLEKIIKSIDNLDWYNAEKE--GLGDLYEGLLEKNASETKSGAGQYFT 155 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233 PR ++ + L+ P + DP GT GF+ A ++ + Sbjct: 156 PRVLIDVMVKLV----------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDP 205 Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G EL +TH + + L+ +E + G TLS + Sbjct: 206 EQAEFQKTEAFTGMELVKDTHRLALMNALLHGIEGRL--------EHGDTLSSNGKWLTS 257 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG K ++ + + S+ + FL + N L+ N Sbjct: 258 LDVILTNPPFGTKKGGERATRDD------------LTFETSNKQLNFLQLIYNALKDDGN 305 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 RAA++L + LF G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 306 A--RAAVILPDNVLFESGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 360 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRM 467 KT+ K + DL T++ + G KR + + + Y + + + Sbjct: 361 REKTDRDSTK--EVWVYDLRTNMPSFG-KRTPLTEKHFDDFIKAYHAENRSNVEDERWNV 417 Query: 468 LDYRT 472 Sbjct: 418 FTREE 422 >gi|148927366|ref|ZP_01810897.1| transcriptional regulator, Fis family [candidate division TM7 genomosp. GTL1] gi|147887265|gb|EDK72726.1| transcriptional regulator, Fis family [candidate division TM7 genomosp. GTL1] Length = 675 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 176/486 (36%), Gaps = 70/486 (14%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 SL +W L +G I L+ + +P G++ Sbjct: 5 SLVQKVWNYCNLLRD--DGLSYGDYLEQITYLLFLKMADEYSKP---------PFNRGTH 53 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 I + + SL L +N + + + + F + R Sbjct: 54 IPTDINWQ------------SLRNLTGSNLEAHYIEVLQNLGKQP-GMLGQIYFKAQ-NR 99 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 ++ L+++ G + V IYE L+ +F S+ GA + TPR ++ Sbjct: 100 IQNPAQLHRLVGLIDGETWV--GLDVDVKGEIYEGLLEKFASDTKTGAGQYFTPRPLIQA 157 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----VP 242 T L P +T+ D GTGGF +++A+ +K Sbjct: 158 MTECL----------RPEPSKTMADFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTF 207 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 G E+ P T +C+ + + + D I +L+ D +GKRF Y L NPPFG Sbjct: 208 TGNEIVPATARLCLMNLFLHNI---GDMDSKPPIHLTDSLASD--SGKRFDYILMNPPFG 262 Query: 303 KKWE--KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 KK + + ++ R S+ + F+ H+ ++L++ G+AA+++ Sbjct: 263 KKSSITVSNEDGTQSKESLTYERQDFWTT-TSNKQLNFVQHICSQLKVD----GKAAVIV 317 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + LF G AG IR+ LL+ I I+ LPT +F+ + + NR + Sbjct: 318 PDNVLFEGGAG---ETIRKKLLQTTEIHTILRLPTGIFYANGVKANVIFFDNRPASK--- 371 Query: 421 KVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTF 473 +VQ + ++ N+ K + + + + Y R + + Y Sbjct: 372 EVQTKD-VWVYDMRTNQHFTLKEKKLANADLADFIKCYNPDNRHQRSETERFKKFTYDEV 430 Query: 474 GYRRIK 479 R Sbjct: 431 VTRDKT 436 >gi|302380292|ref|ZP_07268763.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302311897|gb|EFK93907.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] Length = 257 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 8/228 (3%) Query: 1 MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 MT+ + ANFIW A L G + +G VI+P T++RR EC LE T+ AV EKY Sbjct: 10 MTDDVSIDITQEANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKY 69 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 + + +++G FYNTS ++L L N ++N YI SFS N I Sbjct: 70 --TDNKSYPERAMYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQ 127 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + + I ++ K L+ + K FS ++L +T M I+E+LI RF + A + Sbjct: 128 LEIKTHIKKMNKENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRFYQ--NVDAGQY 185 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 T RD++ + ++ G + T+ D G + N Sbjct: 186 YTGRDIIKMMVYVITAEGCDDIY-DEGKVITIADQAAGFRVIIVIEAN 232 >gi|218901962|ref|YP_002449796.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820] gi|218539137|gb|ACK91535.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820] Length = 484 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 175/467 (37%), Gaps = 79/467 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + + IL L+ + EK + Sbjct: 2 NNQEIVQKLWNLCNVLRDDGITYQQYLTELTYIL---FLKMMN-----------EKGNSS 47 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFD 119 +++E + EY +L S + + + + + +I Sbjct: 48 VEDRVNIEHVI---------PEEYRWESLVSREGIELKEHYQRLLLELGSSDNSILRQIY 98 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 ++ + + + L KI K+ ++ + + ++YE L+ + SE GA + T Sbjct: 99 ADASTS-ISEPKNLEKIIKSIDNLDWYNAEKE--GLGDLYEGLLEKNASETKSGAGQYFT 155 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233 PR ++ + L+ P + DP GT GF+ A ++ + Sbjct: 156 PRVLIDVMVKLV----------DPKIGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDVDP 205 Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G EL +TH + + L+ +E +QG TLS + K Sbjct: 206 EQAEFQKTEAFTGMELVKDTHRLALMNALLHGIEGRL--------EQGDTLSSNGKWIKN 257 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F L+NPPFG K ++ + + S+ + FL + N L+ Sbjct: 258 FDVILTNPPFGTKKGGERATRDD------------LTFETSNKQLNFLQLIYNALKDDGK 305 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 RAA++L + LF G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 306 A--RAAVILPDNVLFESGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 360 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 KT+ K + DL T++ + G KR+ + + + + Y + Sbjct: 361 REKTDRNSTK--EVWVYDLRTNMPSFG-KRKPLTEGYFEEFMTAYNA 404 >gi|188586602|ref|YP_001918147.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351289|gb|ACB85559.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 479 Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats. Identities = 86/464 (18%), Positives = 160/464 (34%), Gaps = 82/464 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W + L D + + IL L+ + + + Sbjct: 2 TNQEIIQKLWSLCDVLRDDGVTYHQYVTELTYIL---FLKMM-------KEK---ETEEV 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 +S G YN L +G + + + Y+ + Sbjct: 49 IPKEYRWDSLTTKHGMELYNHYRQLLLDIGQSKNKLLSQIYMNA---------------- 92 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +++ L KI ++ ++ + + +YE L+ + +E GA + TPR Sbjct: 93 -TTNIDEPKNLEKIIQSIDRLDWYSAREE--GLGALYEGLLEKNANETKTGAGQYFTPRP 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHH 234 ++ L P DP GT GF+ A HV Sbjct: 150 LIDTIVEL----------TDPEPGERCNDPAAGTFGFMIAADRHVRKKTDDYFSLSQKEA 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + G EL + H + + ++ LE + I G TLS+ K + Sbjct: 200 EFQVKEAFTGCELVKDVHRLGLMNAMLHELEGE--------IILGDTLSEAGKNLKNYDV 251 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG K ++ + ++ + FL H+ L+ Sbjct: 252 VLTNPPFGTKKSGERPTRDD------------LTYTTTNKQLNFLQHIYRSLKPNGKA-- 297 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G ++IR L+E + I+ LPT +F+ + T + + + Sbjct: 298 RAAVVLPDNVLFEDNTG---AKIRNDLMEKCNLHTILRLPTGIFYAQGVKTNVLFFTRGQ 354 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T++ K + DL T++ + G K + D + Y + Sbjct: 355 TDKDNTK--EVWVYDLRTNMESLG-KTNPLRKDHFDDFIKAYKA 395 >gi|227878602|ref|ZP_03996525.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus crispatus JV-V01] gi|256843208|ref|ZP_05548696.1| type I restriction modification system [Lactobacillus crispatus 125-2-CHN] gi|256850434|ref|ZP_05555862.1| type I restriction modification system [Lactobacillus crispatus MV-1A-US] gi|262046415|ref|ZP_06019377.1| type I restriction modification system [Lactobacillus crispatus MV-3A-US] gi|293382103|ref|ZP_06628049.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1] gi|312977434|ref|ZP_07789182.1| type I restriction-modification system, M subunit [Lactobacillus crispatus CTV-05] gi|227861808|gb|EEJ69404.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus crispatus JV-V01] gi|256614628|gb|EEU19829.1| type I restriction modification system [Lactobacillus crispatus 125-2-CHN] gi|256712831|gb|EEU27824.1| type I restriction modification system [Lactobacillus crispatus MV-1A-US] gi|260573286|gb|EEX29844.1| type I restriction modification system [Lactobacillus crispatus MV-3A-US] gi|290921338|gb|EFD98394.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1] gi|310895865|gb|EFQ44931.1| type I restriction-modification system, M subunit [Lactobacillus crispatus CTV-05] Length = 483 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 96/547 (17%), Positives = 180/547 (32%), Gaps = 85/547 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63 + + +W L D + I T L+ ++ + Sbjct: 2 NNQEIVQKLWNECNILRDDGVS--YQDYITELTYILFLKM-------SKE---QGEQDDI 49 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ V G N L LG+ N S +I D S++ Sbjct: 50 PQKYQWDNLVSKEGLELSNFYRQLLLDLGNPEVVN---------SPRINSI--YADASTS 98 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I + L KI K+ ++ D + ++YE L+ + SEV GA + TPR + Sbjct: 99 IHKPAD---LEKIIKDIDALDWWSAR--DEGLGDLYEGLMEKNASEVKSGAGQYFTPRVL 153 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235 +++ + P + DP GT GF+ A ++ D + Sbjct: 154 INMMVRM----------TQPKIGDRCNDPAAGTFGFMVAADRYLKDQTDDYSTLSADKEE 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL TH + + + ++ + G +LS + K F Sbjct: 204 FQVKEAFSGMELVETTHRLAMMNEYLHGMDGRL--------ELGDSLSSNGKWMKDFDVV 255 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG K D + K S+ + FL + N L+ R Sbjct: 256 LTNPPFGTKKGSDDSVSRDDL-----------TYKTSNKQLNFLQIIYNSLKHNGKA--R 302 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+V+ + LF A IR+ LL + I+ LPT +F+ + T + + ++ Sbjct: 303 AAVVVPDNVLF---ADGVGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGES 359 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472 ++ K D+ +R+ G KR ++D + ++ + K D Sbjct: 360 DKDNTK--ETWIYDMRHQMRSFG-KRNPLSDKDFAEFEKLFCVDDRSKRKETWDKEKNSN 416 Query: 473 FGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 +R+ + L+ ++ + D + + + + Sbjct: 417 GRWRKFTIDEILKRPNTSLDISWMNDEEEHDNRSLKEILDEMNDKSKAIRDAIAELNKAL 476 Query: 527 YPYGWAE 533 + Sbjct: 477 EGIDDED 483 >gi|251798709|ref|YP_003013440.1| N-6 DNA methylase [Paenibacillus sp. JDR-2] gi|247546335|gb|ACT03354.1| N-6 DNA methylase [Paenibacillus sp. JDR-2] Length = 494 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 165/477 (34%), Gaps = 80/477 (16%) Query: 9 ASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + +W L D + + E T + I Sbjct: 4 QDIVQKLWNLCNVLRDDGITYHQY---------------VTELTYVLFLKMMKETDNEGI 48 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127 E + + T + ++ + R L ++ K I + + + + Sbjct: 49 LPEQYRWDS-----LTERHGMA--LQQHYRQLLLDLGNQGNETIKQI-----YMNATSNI 96 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + L KI + ++ + + ++YE L+ + SE GA + TPR ++ + Sbjct: 97 NEPKNLEKIITSIDQLDWYSAKEE--GLGDLYEGLLEKNASETKSGAGQYFTPRPLIDVI 154 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPI 239 T L+ P DP GT GF+ A HV + + Sbjct: 155 TKLV----------DPQPGERCNDPAAGTFGFMIAADRHVRNNTDDYFDLGEKEAEFQKH 204 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 G EL +TH + + ++ + + I G TLS D K F L+NP Sbjct: 205 QAFTGVELVKDTHRLAMMNAMLHDIHGE--------IILGDTLSDDGTNLKNFDVILTNP 256 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG K ++ + ++ + FL H+ L+ RAA++ Sbjct: 257 PFGTKQGGERPTRDD------------LTFATTNKQLNFLQHIYRALKANGKA--RAAVI 302 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 L + LF G ++IR L++ + I+ LPT +F+ + T + + KT++ Sbjct: 303 LPDNVLFESGVG---TKIRADLMDKCNLNTILRLPTGIFYAQGVKTNVLFFTREKTDKDS 359 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472 K I DL T++ + G KR + + Y++ + + + Sbjct: 360 TK--NIWVYDLRTNMPSFG-KRNPLTVSHFDAFVAAYMAEDRTKVEDERWNVFTRED 413 >gi|255523606|ref|ZP_05390573.1| N-6 DNA methylase [Clostridium carboxidivorans P7] gi|255512661|gb|EET88934.1| N-6 DNA methylase [Clostridium carboxidivorans P7] Length = 473 Score = 197 bits (501), Expect = 6e-48, Method: Composition-based stats. Identities = 91/472 (19%), Positives = 164/472 (34%), Gaps = 86/472 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + + +W L D + + IL L+ + + Sbjct: 2 NTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMAKETGAEEK---------- 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + G + L+ LG T + I + Sbjct: 49 IPEGYRWDDLKSKNGIELKKFYKELLNYLGEKGTGT------------VQQI-----YQG 91 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 + +++ L KI G++ + + N+YE L+ + SE GA + TPR Sbjct: 92 SATNIDEPKNLEKIITTIDGLDWYSAKEE--GLGNLYEGLLEKNASEKKSGAGQYFTPRV 149 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234 ++ + L+ P DP GT GF+ A +++ + Sbjct: 150 LIDVMVKLI----------DPKPGEKCNDPAAGTFGFMIGADHYLKQKYDNYFDLDTDLQ 199 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + G EL ETH + + ++ +E NI G TL+ + K Sbjct: 200 EFQRTKAFSGCELVHETHRLALMNAMLHDIEG--------NIILGDTLTNEGKKMKDLDV 251 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 LSNPPFG K ++ + S+ + FL H+ L+ Sbjct: 252 VLSNPPFGTKKGGERATRDD------------LTFMTSNKQLNFLQHIYRSLKADGKA-- 297 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G ++IR L++ + I+ LPT +F+ + T + + Sbjct: 298 RAAVVLPDNVLFQEGDG---TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGT 354 Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGK 463 T++ K V + L T+++N G K + + + Y +RE K Sbjct: 355 TDKDNTKEVWFYD---LRTNMQNFG-KTNPLKESHFDDFVKAYKAENREEVK 402 >gi|307945076|ref|ZP_07660412.1| type I restriction-modification system DNA methylase [Roseibium sp. TrichSKD4] gi|307770949|gb|EFO30174.1| type I restriction-modification system DNA methylase [Roseibium sp. TrichSKD4] Length = 722 Score = 197 bits (501), Expect = 6e-48, Method: Composition-based stats. Identities = 76/483 (15%), Positives = 158/483 (32%), Gaps = 67/483 (13%) Query: 8 AASLANF---IWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + F +W A++L ++ I+ LR+ +A+ + Sbjct: 6 LTDIEQFDAELWTIADNLRANSGLASNEYFMPIMGLLFLRQATNRYYEALAAIEAEKANG 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DF 120 + L + + +L + + + + F Sbjct: 66 KMPDRPLRDVDFTRRRAMMLPEAARYDVILDQPKDGSLGEALTAAMEAVEEHFPPLAGQL 125 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 R + LL + + F L V IYE+ + F + + +F TP Sbjct: 126 PKDYERFDD-ELLESMMRKFDTEALR--KASGDVFGRIYEYFLAEFSKQGAHDNGEFFTP 182 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V ++ ++DP CG+GG + + + G Sbjct: 183 PSIVQTIVNVI-----------EPDHGIIFDPACGSGGMFVQSSHFIEHEGKDTMKRV-- 229 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---TLSKDLFTG-------- 289 +G E T + + + L +IQ G+ T KD Sbjct: 230 TFYGHEKNETTAKLAQINLAVHGL--------QGSIQAGNEAITYYKDPHELIQHDKNAD 281 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLM 340 + + ++NPPF + R GLP K+S+ + L++ Sbjct: 282 RVIGKCDFVMANPPFNVDEVDAEKVKN-------DPRLPFGLPGVNKAKKVSNANFLWMS 334 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + N L+ GRA +V+SS AG E+++R+ L+E ++ ++ + + F+ Sbjct: 335 YFYNYLKDT----GRAGVVMSSQA---SSAGRDEAKVRQKLVETGAVDVMIDIRGNFFYT 387 Query: 401 TNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + LW K + R+ V +++A +++ + I+ +Y Sbjct: 388 RTVPCQLWFFDRAKEADEARKDHVLMLDARNIYRKVSRAIYDFSPEQQKNIAAIVWLYRG 447 Query: 459 REN 461 + + Sbjct: 448 QSD 450 >gi|32476612|ref|NP_869606.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica SH 1] gi|32447158|emb|CAD76984.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica SH 1] Length = 507 Score = 197 bits (500), Expect = 8e-48, Method: Composition-based stats. Identities = 88/470 (18%), Positives = 156/470 (33%), Gaps = 88/470 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63 + + +W L + + L F L+ + + T + Sbjct: 2 NTNDIVGKLWSLCHVLRD--DGITYQDYVNELSFLLFLKMM----QETGQ------ESEL 49 Query: 64 GSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G +FY L LG+ S +++F D + Sbjct: 50 PDGYRWSDLESKDGVEQLAFY---RAMLVHLGTEG------------SPRVQSVFADAN- 93 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 L + L K+ ++ ++ + + ++YE L+ R SE GA + TP Sbjct: 94 ----TSLRQPKNLSKLVQDLDELDWYVAREE--GLGDMYEGLLERNASEKKSGAGQYFTP 147 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GS 232 R ++ + P + DP GTGGFL A ++ + Sbjct: 148 RPLIECMVNCM----------RPQPGEVIQDPAAGTGGFLIAAHQYICNQTDDLFDLDAD 197 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 H EL P+TH + V ++ + ++ G ++ Sbjct: 198 EQVFQKQQAYHAVELVPDTHRLLVMNCMLHGVGG--------HLASGDSMGSIGQNLPNA 249 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPFG K + + + FL H+ L+ Sbjct: 250 DVILTNPPFGTK-RGGGKPTRDDFTFV-----------TGNKQLAFLQHIYRGLKP---- 293 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GGRAA+VL + LF G + IR L++ + I+ LPT +F+ + T + + Sbjct: 294 GGRAAVVLPDNVLFEEGVG---TRIRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTR 350 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 KT+ K DL T++ G KR + + Y + +G Sbjct: 351 GKTDTGNTK--QTWVYDLRTNMPAFG-KRTPLTHGHFAEFEKCYGKKADG 397 >gi|14518368|ref|NP_116851.1| putative hsdm of type i restriction-modification system [Microscilla sp. PRE1] gi|14485003|gb|AAK62885.1| MS163, putative HsdM of type I restriction-modification system [Microscilla sp. PRE1] Length = 362 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 67/383 (17%), Positives = 132/383 (34%), Gaps = 51/383 (13%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID------ 68 +W A +L G ++ ILP ++ L E + Sbjct: 12 LWDAANELRGAVSENNYKNYILPLVFVKHLSERYEMVHDELDNMLHDPKSDYYTTDNEEI 71 Query: 69 ----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSS 122 + + +F S L +++++ + D + + ++ ++ Sbjct: 72 SYVLEDQDEYRSRNTFKIPKTASWQYLKDNAEQDDIKVIVDDAFDVMQDLLTAYNPQLNN 131 Query: 123 TIARLE-----KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 + R+ A I S + ++ IYE+ I RF GA Sbjct: 132 LLPRIFVRSELSAKQTGGIINLLSHPKFSEKENPESDILGRIYEYYIGRFAMAEGSGAGQ 191 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L LL ++DP CG+ G ++ V + G + Sbjct: 192 FFTPGSIVRLLVELL-----------EPYKGRIFDPACGSWGMFVQSLKFVKEHGGN--- 237 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 + +GQE+ +T +C+ +++R L D I+ G++L D F + + + Sbjct: 238 KSDISIYGQEMTAQTLRLCLMNLMLRELSFD--------IKLGNSLLDDKFPDLKVDFII 289 Query: 297 SNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +NPPF +D G F + + +++ + L + G Sbjct: 290 ANPPFNVSNWHPEDLPEGDPRLFGPKEEF----TTDGNANYMWMQTFWHHL----SDTGT 341 Query: 356 AAIVLSSSPLFNGRAGSGESEIR 378 A IV+++ + + GE R Sbjct: 342 AGIVMANGAMTSN--TKGEKSAR 362 >gi|323466193|gb|ADX69880.1| Site-specific DNA-methyltransferase (Adenine-specific) [Lactobacillus helveticus H10] Length = 484 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 92/548 (16%), Positives = 180/548 (32%), Gaps = 86/548 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63 + + +W L D + I T L+ ++ + Sbjct: 2 TNQEIVQKLWSECNVLRDDGVS--YQDYITELTYILFLKM-------SKE---QDEEKDI 49 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ + G N L LG+ I + NA + Sbjct: 50 PEKYRWDNLINKEGLELKNFYRQLLLDLGNPEVVK--SERINAIYANASTAID------- 100 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + L KI K+ + ++ + ++YE L+ + +EV GA + TPR + Sbjct: 101 -----EPANLEKIIKDINDLDWWSAREE--GLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235 +++ + P + DP GT GF+ A ++ D + Sbjct: 154 INMMVKM----------TEPKIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSELSEEKYD 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL P TH + + + ++ +QG +LS + K F Sbjct: 204 FQVKEAFSGMELVPNTHRLAIMNEYLHGMDGRL--------EQGDSLSANGKWMKNFDVV 255 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG K ++ + + S+ + FL + N L+ R Sbjct: 256 LTNPPFGTKKGGERVTRDD------------LTYETSNKQLNFLQIIYNSLKRDGKA--R 301 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+V+ + LF A EIR+ LL + I+ LPT +F+ + T + + Sbjct: 302 AAVVVPDNVLF---ADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRG-- 356 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472 EE + + D+ +R+ G KR +ND + ++ + K D Sbjct: 357 EEDKDNTKETWIYDMRHQMRSFG-KRNPLNDKDFAEFEKLFCVDDRSKRKETWDKEKNPN 415 Query: 473 FGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 +R+ + + + + ++ + + + + + Sbjct: 416 GRWRKFTIDEIKKRTNTSLDISWMSDEEEHETKSLKEILSDMNEKSKAISEAIAELNKAL 475 Query: 527 YPYGWAES 534 +E Sbjct: 476 EGIDDSED 483 >gi|257094685|ref|YP_003168326.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047209|gb|ACV36397.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 606 Score = 196 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 112/603 (18%), Positives = 200/603 (33%), Gaps = 94/603 (15%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRSAV 55 + +L++ I + L GD LP L+ L+ LE Sbjct: 20 TTRENLSSLIGTARQILRKDKGLNGDVDR-------LPLLTWVMFLKFLDD-LETVHEEE 71 Query: 56 REKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGST-------NTRNNLESYIAS 106 + I+ + A N E L+ +G L SY+ Sbjct: 72 ADLDGKRYQPIIEAPYRWRDWAAREDGINGDEL-LAFIGQEVTVRADGKVGKGLFSYLRG 130 Query: 107 FSD-----NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + + + + + F R+ LL I +GI + +S++YE Sbjct: 131 LAGLGEKGSQREVVANV-FKGVQNRMVSGYLLRDIINKINGIHFR-SSEEIHTLSHLYES 188 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 ++R + +F TPR VV + P + T+ DP CGTGGFL Sbjct: 189 MLREMRDAAG-DSGEFYTPRPVVRFMVQV----------TDPKLGETVLDPACGTGGFLV 237 Query: 222 DAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 A +H+A + + GQE +P + + +L+ LE + I Sbjct: 238 GAYDHIAAQVTTPAEWRKLQRETLFGQEAKPLPYMLVQMNLLLHGLE-------APQIAY 290 Query: 279 GSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 G+TL ++ G+R L+NPPFG E + G F P + Sbjct: 291 GNTLDRRINEIGHGERVDVILTNPPFG-----------GEEEVGIKANFPPNMQTAETTQ 339 Query: 336 MLFLMHLANKLE---------LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + FL ++ KL P GGRAA+V+ + LF + I+ +L+ Sbjct: 340 L-FLQYIMRKLRVVGAPVRGGKPAARGGRAAVVVPNGTLFGDGIS---AVIKEEMLKEFR 395 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 + IV LP +F T+I L + ++ R + K + Sbjct: 396 LHTIVRLPQGVFAPYTDIPANLLFFERGGPTDTIWYYEMPLPEG-----RKKYTKTTPLQ 450 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----- 500 D+ L + +RE G + +D+ + V P ++ L Sbjct: 451 FDEFASALAWWDAREEGPQAWKVDFAAKRQAAVDVATPNWQRAESERNAAIALGKPIRGI 510 Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560 + T + + ++ + L+ + + A + + + A Sbjct: 511 EQTIQAAANGDKAALQEQLRALKAGQQAHEQAAKVAQAEGDALYWPIYNLDIKNPNAKAG 570 Query: 561 INA 563 + Sbjct: 571 LEH 573 >gi|237721953|ref|ZP_04552434.1| type I restriction-modification system [Bacteroides sp. 2_2_4] gi|229448822|gb|EEO54613.1| type I restriction-modification system [Bacteroides sp. 2_2_4] Length = 490 Score = 196 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 160/453 (35%), Gaps = 64/453 (14%) Query: 21 DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80 L G +L L+ + N + SF Sbjct: 15 ILGGTISADQCRDYVLALLFLKSAS-------EYYKSNNSFQQDDNSPALRLLVSERSSF 67 Query: 81 -YNTSEYS---LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIARL-EKAGLLY 134 Y E L L + + + I + DF + + + ++ L Sbjct: 68 DYLCKELDSPELGRLINMALYE--LEQVNALVTEGYEINKAIDFESNILGDMNARSIKLR 125 Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 ++ F I L T + ++Y L+ F E + + +TP +VV L T L+ Sbjct: 126 ELLLLFQEIRLTNATGQLIDVGDLYNQLLYIFAEEAGKKINNVLTPTEVVSLITKLI--- 182 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 + L DP G+G L + + G+ +GQE+ +A+ Sbjct: 183 ------DGDRKNACLCDPASGSGTLLVEVGKKMGIRGTE--------LYGQEVNWNLYAL 228 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKD 310 +++ + G +LS ++F +S PPF KW + Sbjct: 229 TKMNLMLNGFKGATFL-------WGDSLSNPKLLDHGGLRKFDIVVSVPPFADKWAAE-- 279 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 E + RF G+P S + ++ H+ L G+A +V+ LF Sbjct: 280 ----EAYSDFYKRFKYGIPPKSQVTWAYISHILASLRND----GQAVVVVPVGVLFRNT- 330 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 ES+IR ++E++L+EA++ LP +LF+ I+T + + E R + ++A Sbjct: 331 ---ESKIREQIIEHNLLEAVIELPPNLFYGAAISTAILVFRK---ERMRTQTLFVDARKG 384 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + S + ++D Q+ + Y G+ Sbjct: 385 YISNKGL----CKLSDKMLEQLSNTYKKFLAGE 413 >gi|17230180|ref|NP_486728.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120] gi|17131781|dbj|BAB74387.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120] Length = 657 Score = 196 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 167/393 (42%), Gaps = 46/393 (11%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R F ++ + F TP +V + + ++ + +T+YDPTCG+G L Sbjct: 1 MRNFATQSGKSKGQFYTPAEVSRVISQVIGVN------SAQSQSQTIYDPTCGSGSLLLK 54 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + L +GQE++ T A+ M++ + I Q +TL Sbjct: 55 SAD---------EAERGLTIYGQEMDNATRALARMNMILHG-------HPTAEIWQDNTL 98 Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 S F K F + ++NPPF K + + K+ G+P +G Sbjct: 99 SSPYFKDADGSLKTFDFAVANPPFSSKAWSNGLDLAKDEFQRFDN---YGIPPAKNGDYA 155 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+H+ L+ G+ AI+L LF G A E+EIR+ L+ +I+ I+ LP +L Sbjct: 156 FLLHMVCSLKS----NGKGAIILPHGVLFRGNA---EAEIRKNLISKGIIKGIIGLPPNL 208 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T I + +L E R+G + +I+A+ + +G K R + + +I+D++ Sbjct: 209 FYGTGIPACIIVLDKEDAENRQG-IFMIDASKGFV---KDGNKNR-LREQDIHKIVDVFN 263 Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSF 514 + K+SRM+ + P + ++ + +EA + K S Sbjct: 264 KQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQ-EEEDIQDIEAHLLGGIPKRDIEALSD 322 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 + + + Q+++ ++ I +E K Sbjct: 323 YWQVYPTLQQELFEAADRPGYLMLKIPGSEVKA 355 >gi|145223000|ref|YP_001133678.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK] gi|145215486|gb|ABP44890.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK] Length = 494 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 91/478 (19%), Positives = 157/478 (32%), Gaps = 65/478 (13%) Query: 11 LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 L + +W L D ++ + + L+ R+ + Sbjct: 7 LVDKLWSYCNVLRDDGVGVIEYTEQLTYLLFLKMAH-----ERATRKLNPQKIVPDEYSW 61 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129 + + G L L + + Sbjct: 62 QKLLDAEGTDLEVEYTKILVGLAQQP-----------------GTLGTIYRKAQNRVQDP 104 Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A L I + + YE L+ + S+ GA + TPRD++ Sbjct: 105 AKLKRLIIDLIDKENWSASGTD--LKGDAYEELLAKGASDKGSGAGQYFTPRDLIRAIVD 162 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----HG 244 ++ +P + T+ DP CGTGGFL A HVA+ G Sbjct: 163 VI----------NPSVSDTIVDPACGTGGFLLVAHEHVAEGAGKLTPTQRSHLRDKFVTG 212 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 EL T + +L+ + D I+ L D G+R+ LSNPPFG+K Sbjct: 213 YELVDGTARLAAMNLLLHGI---GTADGESLIEVRDALISD--PGQRWSVVLSNPPFGRK 267 Query: 305 WE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 A +E ++ + S+ + FL H+ L + GRAA+VL + Sbjct: 268 SSLTMVGADGREARDDVEIERQDFVVTTSNKQLNFLQHIMTIL----DINGRAAVVLPDN 323 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G A GE+ +RR LL++ + ++ LPT +F+ + + + E+ Sbjct: 324 VLFEGGA--GET-LRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFFDRKPAAEQPW--- 377 Query: 424 LINATDLWTSIRNEGK--KRRIINDDQRRQILDIY------VSRENGKFSRMLDYRTF 473 ++ N+ K+ + + D Y R + + DY Sbjct: 378 -TKKLWVYDLRTNQHFTLKQNPLRRHHLDEFADSYLSGKPREERVESERWKAYDYDDL 434 >gi|295692968|ref|YP_003601578.1| type i restriction-modification enzyme, m subunit [Lactobacillus crispatus ST1] gi|295031074|emb|CBL50553.1| Type I restriction-modification enzyme, M subunit [Lactobacillus crispatus ST1] Length = 485 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 97/547 (17%), Positives = 178/547 (32%), Gaps = 83/547 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63 + +W L D + I T L+ ++ E Sbjct: 2 KNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKM-------SKEQGEE---NDI 49 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ V G N + L LG+ S AI ++ Sbjct: 50 PEKYRWDNLVSKDGLELSNFYKQLLLDLGNPQVVK---------SSRINAI-----YADA 95 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + K L KI K+ G++ D + ++YE L+ + +EV GA + TPR + Sbjct: 96 STSIHKPASLEKIIKDIDGLDWWSAR--DEGLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235 +++ + P + DP GT GF+ A ++ D + Sbjct: 154 INMMVRM----------TRPKLGDRCNDPAAGTFGFMVAADQYLKDKNDDYSSLSEEKGE 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL TH + + + + + G +LS + K F Sbjct: 204 FQVNEAFSGMELVETTHRLALMNQYLHGMNGRL--------ELGDSLSANGNWMKNFDVV 255 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG K D D S+ + FL + N L+ R Sbjct: 256 LTNPPFGTKKGIDNDKAASRDDITFE---------TSNKQLNFLQIIYNSLKHDGKA--R 304 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+V+ + LF A S IR+ LL + I+ LPT +F+ + T + + ++ Sbjct: 305 AAVVVPDNVLF---ADSVGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGES 361 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472 ++ K D+ +R+ G KR +N+ + ++ + K D Sbjct: 362 DKDNTK--ETWIYDMRHQMRSFG-KRNPLNEKDFAEFEKLFCVDDRSKRKETWDKDKNPN 418 Query: 473 FGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 +R+ + L+ I ++ + D + + + + Sbjct: 419 GRWRKFTIDEILKRPNISLDISWMNDEEEHDNRSLKEILDEMNDKSKAIRDAIAELNKAL 478 Query: 527 YPYGWAE 533 + Sbjct: 479 EGIDDED 485 >gi|161507779|ref|YP_001577743.1| Type I restriction modification system [Lactobacillus helveticus DPC 4571] gi|160348768|gb|ABX27442.1| Type I restriction modification system [Lactobacillus helveticus DPC 4571] Length = 484 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 186/549 (33%), Gaps = 88/549 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63 + + +W L D + I T L+ ++ + Sbjct: 2 TNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKM-------SKE---QDEEKDI 49 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ V G N L LG+ I + NA + Sbjct: 50 PEKYRWDNLVNKEGLELKNFYRQLLLDLGNPEVVK--SERINAIYANASTAID------- 100 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + L KI K+ + ++ + ++YE L+ + +EV GA + TPR + Sbjct: 101 -----EPANLEKIIKDINDLDWWSAREE--GLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235 +++ + P + DP GT GF+ A ++ D + Sbjct: 154 INMMVKM----------TKPKIGDRCNDPAAGTFGFMVAADQYLKDKTDDYSELSEEKYD 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL P TH + + + ++ +QG +LS + K F Sbjct: 204 FQVKEAFSGMELVPNTHRLAIMNEYLHGMDGRL--------EQGDSLSANGKWMKNFDVV 255 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG K ++ + + S+ + FL + N L+ R Sbjct: 256 LTNPPFGTKKGGERVTRDD------------LTYETSNKQLNFLQIIYNSLKRDGKA--R 301 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+V+ + LF A EIR+ LL + I+ LPT +F+ + T + + Sbjct: 302 AAVVVPDNVLF---ADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRG-- 356 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472 EE + + D+ +R+ G KR +ND + ++ + K D Sbjct: 357 EEDKDNTKETWIYDMRHQMRSFG-KRNPLNDKDFVEFEKLFCVDDRSKRKETWDKEKNPN 415 Query: 473 FGYRRIKVL----RP---LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +R+ + RP L +S++ D+ ++ + + + + Sbjct: 416 GRWRKFTIDEIKKRPNTSLDISWMSDEEEHET-KSLKEILSDMNEKSKAISEAIAELNKA 474 Query: 526 IYPYGWAES 534 + +E Sbjct: 475 LEGIDDSED 483 >gi|281421792|ref|ZP_06252791.1| type I restriction-modification system, M subunit [Prevotella copri DSM 18205] gi|281404150|gb|EFB34830.1| type I restriction-modification system, M subunit [Prevotella copri DSM 18205] Length = 477 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 81/464 (17%), Positives = 152/464 (32%), Gaps = 76/464 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57 M + + +L +W A L G F I L L+ + +E Sbjct: 1 MAKNITTEQTLTKKVWNLATTLAGVGVG--FTDYITQLTYLLFLKMDDENMELFGE---- 54 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + + + GY E +L L + + Sbjct: 55 --DSSIPVGYRWKDLTGLDGYDLVKQYESTLKLLSQQD-----------------DLIGT 95 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + +++K L K+ + + V IYE ++ + G + GA + Sbjct: 96 IYTKAQ-NKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGAGQY 152 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR ++ L P + T+ DP CGTGGFL A +++ + + Sbjct: 153 FTPRPLIKAMVDCL----------QPQIGETVCDPACGTGGFLLAAYDYMKEQSQNRDKL 202 Query: 238 P---ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 HG ++ P + + + + +D I +L K+ Sbjct: 203 DFLNNKALHGNDITPLVVTLASMNLYLHGIGTD-----HSPIVCEDSLEKE--PSTLVDV 255 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG + + + + + FL H+ L+ GG Sbjct: 256 ILANPPFGTRPAGSVEINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GG 300 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G AG IR+ LL + + I+ LPT +F+ + + + + Sbjct: 301 RAAVVLPDNVLFEGNAG---ETIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFTKGQ 357 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + + + + + + + Y + Sbjct: 358 PTK---NIWFYD----YRTGVKHTLATNKLERHHLDDFVTCYHA 394 >gi|284108605|ref|ZP_06386423.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3] gi|283829885|gb|EFC34174.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3] Length = 271 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 117/314 (37%), Gaps = 57/314 (18%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +WK+ ++L G + + +L ++ + Sbjct: 1 MALKKSQLYSSLWKSCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120 + G F + L + + IA ++ K + + DF Sbjct: 45 HAGKPGALIEVPVGGGF-----ADMVKLKGDKEIGDKINKIIARLAEANELKGVIDQADF 99 Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175 + +L L K+ F ++ H + D ++ + YE+L+R F +E + Sbjct: 100 NDE-GKLGSGKELQDRLSKLVAIFESLDFHANRAEGDDLLGDAYEYLMRHFATESGKSKG 158 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +V + ++ D + T+YDPTCG+G L A + + Sbjct: 159 QFYTPAEVSRIMAKVVGIGSDTRQDQ------TIYDPTCGSGSLLLKAAD---------E 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290 P + +GQE++ T+++ M++ + ++ G+TL+ F K Sbjct: 204 APNGITVYGQEMDNATYSLARMNMILHN-------HPTADLWHGNTLAAPYFKNQNGSLK 256 Query: 291 RFHYCLSNPPFGKK 304 F + ++NPPF K Sbjct: 257 TFDFAVANPPFSAK 270 >gi|298384307|ref|ZP_06993867.1| type I restriction-modification system, M subunit [Bacteroides sp. 1_1_14] gi|298262586|gb|EFI05450.1| type I restriction-modification system, M subunit [Bacteroides sp. 1_1_14] Length = 472 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 95/552 (17%), Positives = 179/552 (32%), Gaps = 93/552 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + SL +W A L F I L L+ + Sbjct: 1 MATNNTTEQSLTKKVWSLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + + + + G E +L L ++NL I Sbjct: 51 MFGE-ESAIPTGYQWNDLIALDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + +P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLAAYDYMKVQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF AG IR+ LL++ + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + + ++ + + + + + Y +R + + Sbjct: 355 KGQPTK---EIWFYD----YRTDVKHTLATNKLERHHLDDFISCYNNRVETYDAE--NNP 405 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 +R+ + L + DITW K + L L ++ Sbjct: 406 QGRWRKYPIEDILVR---------DKTSLDITWIKQGGEADNRSLAELMADIKDKSQTIS 456 Query: 532 AESFVKESIKSN 543 + E + +N Sbjct: 457 SAVAELEKLLAN 468 >gi|291485260|dbj|BAI86335.1| hypothetical protein BSNT_04128 [Bacillus subtilis subsp. natto BEST195] Length = 476 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 99/543 (18%), Positives = 189/543 (34%), Gaps = 80/543 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + +W L + + + T L L+ E V Sbjct: 2 NNQEIVQKLWNLCNVLRD--DGITYQQYVTELTYLLFLKMMKEQETEGVI-------PEG 52 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + + G + L LGS S ++ + I +S Sbjct: 53 YRWDDLLDKEGLELKTFYQRLLLELGS------------SENERLRLI-----YSDASTS 95 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + + L KI K+ ++ + + N+YE L+ + SE GA + TPR ++ + Sbjct: 96 IAEPKNLEKIIKSIDALDWYNAKEE--GLGNLYEGLLEKNASEKKSGAGQYFTPRVLIDV 153 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPP 238 L+ P + DP GT GF+ A ++ + + Sbjct: 154 MVQLI----------DPKIGERCADPAAGTFGFMIAADQYLKNQTDDYFDIEPQEAEFQK 203 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G EL +TH + + L+ +E +QG TLS + K F L+N Sbjct: 204 KEAFVGMELVKDTHRLALMNALLHNIEGRL--------EQGDTLSGNGKWMKNFDVILTN 255 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG K ++ + + + S+ + FL + N L+ N RAA+ Sbjct: 256 PPFGTKKGGERVSRDD------------LTFETSNKQLNFLQLIYNALKDDGNA--RAAV 301 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 +L + LF GS +IRR L+ + I+ LPT +F+ + T + + T++ Sbjct: 302 ILPDNVLFESGIGS---QIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTRGTTDQD 358 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRTFG 474 K + DL T++ + G KR + + YV+ + + Sbjct: 359 NTKD--VWVYDLRTNMTSFG-KRNQLTMAHFEHFMKAYVAEDRSKVEDERWNKFSREEIA 415 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + + + + + L I + + +++L +++++ E Sbjct: 416 KKDDSLD--IGLIADESLSSYENLPDPIESAEEAIAKLQQAMELLNEVVEELRAVEEDEV 473 Query: 535 FVK 537 K Sbjct: 474 VKK 476 >gi|261419106|ref|YP_003252788.1| N-6 DNA methylase [Geobacillus sp. Y412MC61] gi|261375563|gb|ACX78306.1| N-6 DNA methylase [Geobacillus sp. Y412MC61] Length = 493 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 160/479 (33%), Gaps = 86/479 (17%) Query: 10 SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + +W L D + + + L+ Sbjct: 5 EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 +K G + Y L + + + + + + ++ + Sbjct: 39 ---MMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQI-YTDATS 94 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + + L KI + ++ + + +YE L+ + SE+ GA + TPR ++ Sbjct: 95 NIREPKNLEKIIRTIDALDWYNAKEE--GLGALYEGLLEKNASELKSGAGQYFTPRVLID 152 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237 + L+ P +DP GT GF+ A HV + Sbjct: 153 VIVELV----------DPKPGERCHDPAAGTFGFMIAASRHVRAKTDDYFDLSEEEIRFQ 202 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G EL +TH + V L+ + D I G TLS K + L+ Sbjct: 203 KYKAFSGVELVRDTHRLAVMNALLHDVHGD--------ILLGDTLSPLGEQLKGYDVILT 254 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K ++ F S+ + FL H+ L RAA Sbjct: 255 NPPFGTKKGGERATRTD---------FTFMT---SNKQLNFLQHIYRALRPNGKA--RAA 300 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + E Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRG--ET 355 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472 G + + DL T++ + G KR + D + Y + + + + + Sbjct: 356 DTGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTAEDRHQVDDERWNVFTRDD 413 >gi|297530925|ref|YP_003672200.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. C56-T3] gi|297254177|gb|ADI27623.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. C56-T3] Length = 493 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 160/479 (33%), Gaps = 86/479 (17%) Query: 10 SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + +W L D + + + L+ Sbjct: 5 EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 +K G + Y L + + + + + + ++ + Sbjct: 39 ---MMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQI-YTDATS 94 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + + L KI + ++ + + +YE L+ + SE+ GA + TPR ++ Sbjct: 95 NIREPKNLEKIIRTIDALDWYNAKEE--GLGALYEGLLEKNASELKSGAGQYFTPRVLID 152 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237 + L+ P +DP GT GF+ A HV + Sbjct: 153 VIVELV----------DPKPGERCHDPAAGTFGFMIAASRHVRAKTDDYFDLSEEEIRFQ 202 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G EL +TH + V L+ + D I G TLS K + L+ Sbjct: 203 KYEAFSGVELVRDTHRLAVMNALLHDVHGD--------ILLGDTLSPLGEQLKGYDVILT 254 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K ++ F S+ + FL H+ L RAA Sbjct: 255 NPPFGTKKGGERATRTD---------FTFMT---SNKQLNFLQHIYRALRPNGKA--RAA 300 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + E Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRG--ET 355 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472 G + + DL T++ + G KR + D + Y + + + + + Sbjct: 356 DTGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTAEDRHQVDDERWNVFTRDD 413 >gi|160884785|ref|ZP_02065788.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483] gi|156109820|gb|EDO11565.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483] Length = 490 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 92/543 (16%), Positives = 179/543 (32%), Gaps = 89/543 (16%) Query: 18 NAEDLW----GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 A G +L L+ + E Y + D Sbjct: 8 IANKARQILGGTLSANQCRDYVLALLFLK-----------SASEYYKSNDSFQQDDNKL- 55 Query: 74 KVAGYSFYNTSEYSL--STLGSTNTRNNLESYI------ASFSDNAKAIFEDFDFSSTI- 124 S + L S + + + F I + DF S I Sbjct: 56 -TLHLLVSERSSFDYLCKALDSPDLGRLINMALYELEQANGFVTEGYEINKAIDFESNIL 114 Query: 125 -ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ L + + F + L + ++Y L+ F E + + + P +V Sbjct: 115 GEANTRSSKLRGLLQLFQEVRLTDAIGQLIDVGDLYNQLLYIFAEEAGKKINNVLAPTEV 174 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 V L T L+ + L DP G+G L + + G+ + Sbjct: 175 VSLITKLI---------DGNRKNACLCDPASGSGTLLIEVGKKMGIRGTD--------IY 217 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299 GQE+ +A+ +++ + G +L K+F +S P Sbjct: 218 GQEVNWNLYALTKMNLMLNGFKGATFL-------WGDSLRSPKLLDHGGLKKFDIVVSVP 270 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF KW + E + RF G+P S + ++ H+ L G+A +V Sbjct: 271 PFADKWASE------EAYDDFYRRFKYGIPPKSQVTWAYISHILASLRND----GQAVVV 320 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 + LF ES+IR ++E +L+EA++ LP++LF T I+T + + E R Sbjct: 321 VPVGVLFRNT----ESKIREQIIEYNLLEAVIELPSNLFHGTAISTAILVFRK---ERMR 373 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 + ++A + S + ++D Q+ +IY G+ + Sbjct: 374 TQTLFVDARKGYISNKGL----YKLSDKVLEQLPNIYKKFLIGE-------------EVG 416 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 + ++ + + + D+ K +K +++I +++ + Sbjct: 417 GEKNGCPVYVATQDEIRHNKYDLKVIKYVEDKIERKEIDVKDALRKIDELEERLTYIDKQ 476 Query: 540 IKS 542 K Sbjct: 477 FKD 479 >gi|218679450|ref|ZP_03527347.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium etli CIAT 894] Length = 120 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 55/120 (45%), Positives = 75/120 (62%) Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613 A ++A +D A D +G PD L ++E VP E + Y REV+P VPD Sbjct: 1 APVRKAILSALSERDESAAICLDGDGRPEPDPELRDHELVPLKEDWKSYVAREVTPFVPD 60 Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 A++D+ + D+ DK +GRVGYEINFNR+FY+Y R L +IDAELK +E IA LL+E+A Sbjct: 61 AWVDETYRDDADKGVGRVGYEINFNRYFYRYVAPRPLAEIDAELKTLETDIADLLKEVAG 120 >gi|318042339|ref|ZP_07974295.1| Site-specific DNA-methyltransferase (adenine- specific) [Synechococcus sp. CB0101] Length = 570 Score = 194 bits (494), Expect = 4e-47, Method: Composition-based stats. Identities = 86/458 (18%), Positives = 153/458 (33%), Gaps = 71/458 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF--------VKVAGYSFYNTS--EYS 87 L+ L+ LE R+A + I E + G +N S Sbjct: 114 LLFLKYLDG-LEDDRAA-MALLEGRSYTPILEEPYRWNSWAAPKNADGQLDHNASLTGDD 171 Query: 88 LSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + LE + S N F ++ L +I G+ Sbjct: 172 LRDFVNQRLFPYLEQFKQRASGPNTIEYKIGEIFGEIRNKISSGYNLREIIDVIDGLRFR 231 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 +S +YE I+R G ++ TPR ++ ++ +P + Sbjct: 232 -SQAEKHELSMLYEEKIKRMG-NAGRNGGEYYTPRPLIRAIVQVI----------NPQIG 279 Query: 207 RTLYDPTCGTGGFLTDAMNHVAD--------CGSHHKIPPILVPHGQELEPETHAVCVAG 258 T+YDP G+ GFL +A ++ G+E + + + + Sbjct: 280 ETVYDPAVGSAGFLCEAFEYMRKGGASGRELSTEDLDTLQTRTFTGKEKKSLAYVIAIMN 339 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + I +TL++ D+ RF L+NPPFG K+ Sbjct: 340 MILHGIE-------APKIIHANTLTENLSDVQERDRFDVILANPPFGGSERKEVQQNFPI 392 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + + + LFL H L GGRA +V+ ++ L N S Sbjct: 393 --------------RSGETAFLFLQHFIRMLR----AGGRAGVVIKNTLLSNSDNAS--V 432 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ LLE + ++ P F + T + ++ QL R Sbjct: 433 ALRQKLLEECNLHTVLDCPGGTFQGAGVKTVVLFFEKGAPTQKVWFYQL-------DPGR 485 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 N G K ++D + +++ + + S LD Sbjct: 486 NLG-KTNPLHDRDLAEFVELQKNFADSPKSWSLDVADV 522 >gi|212691149|ref|ZP_03299277.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855] gi|237712399|ref|ZP_04542880.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 9_1_42FAA] gi|212666381|gb|EEB26953.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855] gi|229453720|gb|EEO59441.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 9_1_42FAA] Length = 472 Score = 194 bits (494), Expect = 4e-47, Method: Composition-based stats. Identities = 97/552 (17%), Positives = 179/552 (32%), Gaps = 93/552 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + SL +W A L F I L L+ + Sbjct: 1 MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + + + + G E +L L ++NL I Sbjct: 51 MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + +P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF AG IR+ LL++ + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + + ++ + + + + + Y +R + + Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVETYDAE--NNP 405 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 +R+ V L + DITW K + L L ++ Sbjct: 406 QGRWRKYPVDEIL---------ARDKTSLDITWIKQGGEVDNRSLAELMADIKDKSQTIS 456 Query: 532 AESFVKESIKSN 543 A E + +N Sbjct: 457 AAVVELEKLLAN 468 >gi|270719566|ref|ZP_06223326.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus influenzae HK1212] gi|270315414|gb|EFA27679.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus influenzae HK1212] Length = 219 Score = 194 bits (494), Expect = 4e-47, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 24/214 (11%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116 + +D K+ G+ FYNTS+++L +L T + N E Y+ FS N I Sbjct: 66 AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163 F I + +L + + F I L P + M ++E LI Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 R+F E +E A + TPR+V+ L T L+ DP Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKD 219 >gi|319765923|ref|YP_004131424.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y412MC52] gi|317110789|gb|ADU93281.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus sp. Y412MC52] Length = 493 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 86/479 (17%), Positives = 159/479 (33%), Gaps = 86/479 (17%) Query: 10 SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 + +W L D + + + L+ Sbjct: 5 EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 +K G + Y L + + + + + + ++ + Sbjct: 39 ---MMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQI-YTDATS 94 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + + L KI + ++ + + +YE L+ + SE+ GA + TPR ++ Sbjct: 95 NIREPKNLEKIIRTIDALDWYNAKEE--GLGALYEGLLEKNASELKSGAGQYFTPRVLID 152 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237 + L+ P +DP G GF+ A HV + Sbjct: 153 VIVELV----------DPKPGERCHDPAAGMFGFMIAASRHVRAKTDDYFDLSEEEIRFQ 202 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G EL +TH + V L+ + D I G TLS K + L+ Sbjct: 203 KYKAFSGVELVRDTHRLAVMNALLHDVHGD--------ILLGDTLSPLGEQLKGYDVILT 254 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K ++ F S+ + FL H+ L RAA Sbjct: 255 NPPFGTKKGGERATRTD---------FTFMT---SNKQLNFLQHIYRALRPNGKA--RAA 300 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + E Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRG--ET 355 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472 G + + DL T++ + G KR + D + Y + + + + + Sbjct: 356 DTGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTAEDRHQVDDERWNVFTRDD 413 >gi|260579046|ref|ZP_05846945.1| type I restriction-modification system methyltransferase subunit [Corynebacterium jeikeium ATCC 43734] gi|300933495|ref|ZP_07148751.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100] gi|258602797|gb|EEW16075.1| type I restriction-modification system methyltransferase subunit [Corynebacterium jeikeium ATCC 43734] Length = 242 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 13/250 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + ++ A L G ++ + VI+P T++RRLECALE T+ AV Y Sbjct: 1 MSQIDVKKQ--VDHVFSIANSLRGTYQADKYKDVIIPMTIIRRLECALEETKDAVCTVYE 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFED- 117 + +V+GY FYNTS Y+L L + NL++Y+ +FS N + I + Sbjct: 59 QDDST--PDAILKQVSGYPFYNTSRYTLEKLLAEPAQLHRNLKTYLEAFSPNIRMILDKN 116 Query: 118 --FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 DF + I ++ K L + + FS ++L P+ + + M ++E LIRRF + A Sbjct: 117 EGLDFFTQIDKMHKGSRLTGVVRKFSELDLAPERINNVAMGYMFEELIRRFSE--NAEAG 174 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 D TPR+VV L L L PG + D G D + Sbjct: 175 DHYTPREVVRLLVRLGLAEGSEDLF-EPGKNINVADQ-MGDCSSALSGWLVEHDPCVRQR 232 Query: 236 IPPILVPHGQ 245 Q Sbjct: 233 GTFAWRASCQ 242 >gi|319950292|ref|ZP_08024212.1| N-6 DNA methylase [Dietzia cinnamea P4] gi|319436048|gb|EFV91248.1| N-6 DNA methylase [Dietzia cinnamea P4] Length = 504 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 92/479 (19%), Positives = 165/479 (34%), Gaps = 67/479 (13%) Query: 11 LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 L + +W L D ++ + + L+ Sbjct: 7 LVDKLWSYCNVLRDDGVGVIEYTEQLTYLLFLKM------------------------AH 42 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 E + EYS L + + + + F R Sbjct: 43 ERATRPLKPLQIVPEEYSWQRLVDAQGDELEFEYTRMLTGLAKE-RGVVGTI-FRKAQNR 100 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 ++ L +I + E + D + YE L+ + + GA + TPR ++ Sbjct: 101 IQDPAKLRRIVVDLIDKENWSQSGTDIQ-GDAYESLLAKGAQDKGSGAGQYFTPRPLIQA 159 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---- 242 ++ P + T+ DP CGTGGFL A H A S Sbjct: 160 IVDVI----------QPTIEDTVVDPACGTGGFLLVAHEHAAGTASSMTPTQRHKLQEKF 209 Query: 243 -HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 G EL T + +L+ + + L I+ L D G R+ L+NPPF Sbjct: 210 ATGFELVDGTARLAAMNVLLHGMGTANGESL---IEVRDALVAD--PGHRWSVVLTNPPF 264 Query: 302 GKKWEKDKDAVE--KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 G+K A + + ++ E+ R + S+ + F+ H+ L + GRAA+V Sbjct: 265 GRKSSVTMVAADGSQTREDREIERQDF-VATTSNKQLNFVQHIMTIL----DTNGRAAVV 319 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 L + LF G A GE+ IRR LL++ + ++ LPT +F+ + + + Sbjct: 320 LPDNVLFEGGA--GET-IRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFFDKKVARPGT 376 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTF 473 + + DL T+ ++ K+ + + ++ Y R + + Y Sbjct: 377 PWTEKLWVYDLRTN-KHFTLKQNPLRRSDLDEFVEAYLPGRHHERTESERWKPFTYDEL 434 >gi|153808177|ref|ZP_01960845.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185] gi|149129080|gb|EDM20296.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185] Length = 472 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 156/471 (33%), Gaps = 82/471 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + SL +W A L F I L L+ + Sbjct: 1 MATNNATEQSLTKKVWSLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + S + + G E +L L ++NL I Sbjct: 51 MFGE-ESAIPSGYQWADLIALDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAMVDCI----------HPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGVGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLTLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF A GE+ IR+ LL + + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGA--GET-IRKRLLRDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + + ++ + + + + + Y +R Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVET 398 >gi|169347006|ref|ZP_02865948.1| 3D domain protein [Clostridium perfringens C str. JGS1495] gi|169296689|gb|EDS78818.1| 3D domain protein [Clostridium perfringens C str. JGS1495] Length = 487 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 83/472 (17%), Positives = 175/472 (37%), Gaps = 61/472 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ T++ L F I ++ ++ F N + N Sbjct: 35 LLFIKGLDDV--ETKNEAEAVLLGFEPERIFSDNEQELRWSKFSNEGDAQKMYDIVQNKV 92 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + ++A I ++ +L KI +GIE + + Sbjct: 93 FPFIKNLHGNKESAY----AKYMGDAIFKIPTPLMLSKIVDGINGIEF---KKENDTKGD 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + L+ P + DP G+ Sbjct: 146 LYEYLLSKLS--SAGTNGQFRTPRHIIDMIVKLM----------KPTPEDIIVDPAAGSA 193 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL + ++ D + + + +G +++ + M++ ++ Sbjct: 194 GFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVD----- 248 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NI+ +LS+ ++F L+NPPF K D +AV E + K Sbjct: 249 --NPNIEYKDSLSEVNTDKEKFTLVLANPPF--KGSLDYEAVSAELLK---------VTK 295 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGR A ++ LF + G ++IR+ ++EN +EAI Sbjct: 296 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHNDIRKEIVENHKLEAI 349 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + + KV + + + KR + ++ Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKTGSG-GTDKVWFYD---MKADGFSLDDKRNPVEENDI 405 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 I++ + + EN + + + F + V + L +E + Sbjct: 406 DDIIERFSNLENEEDRKRTEQSFF----VPVEEIRENGYDLSINKYKEIEYE 453 >gi|260776598|ref|ZP_05885493.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio coralliilyticus ATCC BAA-450] gi|260607821|gb|EEX34086.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio coralliilyticus ATCC BAA-450] Length = 510 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 91/469 (19%), Positives = 162/469 (34%), Gaps = 84/469 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S L +W L D + + + T L L Sbjct: 2 STQDLVAKLWNLCNLLRDDGVS--YHEYMNELTFLVFL-------------------KMA 40 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFD 119 + E+ V + Y S L + + LE Y S A+ I+ + Sbjct: 41 QETETEVDTKSGTVNIPEGYRWSDLKAVDEEIKLEEYKKLLIHLGSHGSLIAQRIYSN-- 98 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 ++TI R L+ + ++ + V + + ++YE L+ EV GA + T Sbjct: 99 -ANTIIR--NTATLHSLVDQIDKLDWY--QVKNEGLGDMYEGLLEINAQEVKSGAGQYFT 153 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH-------VADCG- 231 PR +++ L+ P + + DP GTGGFL A ++ + + Sbjct: 154 PRVLINAMVELM----------KPTLKDVIVDPAAGTGGFLVSANHYMYPDKKKIKELSS 203 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +K G E P T + + M++ + + D + G TLS + Sbjct: 204 KDYKKYQSGTYFGMEFVPMTRRLAMMNMMLHDIAVN---DDKSGVLFGDTLSNEGKDLPD 260 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK-LELPP 350 L+NPPFG K + + + FL + +K L+ Sbjct: 261 ATLILANPPFGNKMGGGVPTRDDLEHY------------TGNKQLAFLHLMYHKILKP-- 306 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA++L + LF G IR L++ + I+ LPT +F+ + T + Sbjct: 307 --GGRAAVILPDNALFESGIG---KTIRSDLMDKCNLHTILRLPTGIFYAAGVKTNILFF 361 Query: 411 SN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 S +K + + V + + ++ G KR + + Sbjct: 362 SKPSDVKKDKGQTKNVWVYDLR---ANMPKFG-KRTTLIPSHFDEFYKA 406 >gi|237726589|ref|ZP_04557070.1| type I restriction enzyme StySJI M protein [Bacteroides sp. D4] gi|265752107|ref|ZP_06087900.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 3_1_33FAA] gi|229435115|gb|EEO45192.1| type I restriction enzyme StySJI M protein [Bacteroides dorei 5_1_36/D4] gi|263236899|gb|EEZ22369.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 3_1_33FAA] Length = 472 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 84/471 (17%), Positives = 156/471 (33%), Gaps = 82/471 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + SL +W A L F I L L+ + Sbjct: 1 MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + + + + G E +L L ++NL I Sbjct: 51 MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + +P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF AG IR+ LL++ + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + + ++ + + + + + Y +R Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVET 398 >gi|86146744|ref|ZP_01065064.1| putative type I restriction-modification system, M subunit [Vibrio sp. MED222] gi|85835394|gb|EAQ53532.1| putative type I restriction-modification system, M subunit [Vibrio sp. MED222] Length = 340 Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 +YDP CG+GG ++ + + K + +GQEL T+ + + IR Sbjct: 3 EPFQGKIYDPACGSGGMFVQSLKFIKEHEGRTK---DIAIYGQELTSTTYKLAKMNLAIR 59 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 L + + T D + Y ++NPPF E + + Sbjct: 60 GLSGNLGE------RAADTFFADQHKDLKADYIMANPPFNL------KGWRNEAELTDDA 107 Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 RF G P + + +++H+ +KL G A + S + SGE EIR+ L Sbjct: 108 RFAGYRTPPTGNANYGWILHMLSKLSETGTAGFVLA---NGSM---SSSTSGEGEIRQQL 161 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-------GKVQLINATDLWTSI 434 +END +E ++ALP LFF T I +W ++ KTE + I+A ++ I Sbjct: 162 IENDRVECMIALPGQLFFTTQIPVCIWFITKDKTENTTKGFRNRQKETLFIDAREMGAMI 221 Query: 435 RNEGKKRRIINDDQRRQILDIYVSR 459 + + D I D Y + Sbjct: 222 SRT---NKELTKDDIALIADTYHAW 243 >gi|325973636|ref|YP_004250700.1| type I restriction-modification system, N-6 DNA methylase family protein [Mycoplasma suis str. Illinois] gi|323652238|gb|ADX98320.1| type I restriction-modification system, N-6 DNA Methylase family protein [Mycoplasma suis str. Illinois] Length = 613 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 93/587 (15%), Positives = 192/587 (32%), Gaps = 86/587 (14%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 +L + +WK ++L K ++F +L L+ ++ + + + E+Y G + Sbjct: 3 TLEHRLWKACDNLRANSSLKESEFCMPVLGIIFLKYMDARYKKAKKKINEEYYQREGIIL 62 Query: 68 DLES-------FVKVAGYSFYN--------TSEYSLSTLGSTNTR------NNLESYIAS 106 E + + + YN S L + +N + IA+ Sbjct: 63 PEEEDDYKRLGVIMLPEGAQYNWILSLPEDISSKELKDVNGQPLNSLGEVLDNAMTLIAT 122 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 ++ + I F + I +L + + F ++ D + +IYE+ + +F Sbjct: 123 KTEKLRGIL--FGEYNRIPD----KILKGLLEIFDHEDIT---WEDDKLGSIYEYFLEQF 173 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 S V F TP +V++ +L T+ DP CG+GG + Sbjct: 174 ASYVKGEEGIFFTPPSLVNIIVNIL-----------EPTQGTVLDPACGSGGMFIAIKQY 222 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + G E +C+ + I L S ++ D Sbjct: 223 MDKHNLNCNEH--ITFWGHEKVEHNARLCLMNIFIHHLGSGKIAGGDD----ANSYYNDH 276 Query: 287 FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLM 340 + + Y L+NPPF + A GR GLP++S + + L++ Sbjct: 277 WGLNGKCDYVLANPPFNIVGVNAEAAEAA-------GRLPFGLPQVSKLEIKNANFLWIS 329 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + + L G + S + + EIR ++E I+ ++ + F Sbjct: 330 YFYSYLNSTGKAGFVMPSITMSGTV--------DKEIRSKVVETKHIDLLINVAPKFFKS 381 Query: 401 T-NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 LW + +K +E KV I+A++ + + + +Y + Sbjct: 382 KFKGDCCLWFFNKQKPQEYENKVLFIDASNYYVPVDAGHNTWNEWQSKNLISTVQLYRGQ 441 Query: 460 EN------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 ++ L + VL K +L D + S ++ Sbjct: 442 VEKYRELISEYKEKLRNYA---DKFSVLVEGDDYLKAFKDKKEQLIKDSEFELSSITNRK 498 Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560 + + + ++ SF + E + K + Sbjct: 499 EKMKLKQEWEEK------HNSFDNAITVAKEFHWIYSKFGEGEYKDI 539 >gi|108800737|ref|YP_640934.1| N-6 DNA methylase [Mycobacterium sp. MCS] gi|119869876|ref|YP_939828.1| N-6 DNA methylase [Mycobacterium sp. KMS] gi|108771156|gb|ABG09878.1| N-6 DNA methylase [Mycobacterium sp. MCS] gi|119695965|gb|ABL93038.1| N-6 DNA methylase [Mycobacterium sp. KMS] Length = 429 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 42/360 (11%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + A L I + + YE L+ + S+ GA + TPRD++ Sbjct: 38 DPAKLKRLIVDLIDKENWSASGTD--LKGDAYEELLAKGASDKGSGAGQYFTPRDLIRAI 95 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----- 242 ++ P + T+ DP CGTGGFL A HVA+ Sbjct: 96 VDVI----------DPSVADTVVDPACGTGGFLLVAHEHVAEEAGKLTPTQRNHLRDKFV 145 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 G EL T + +L+ + D I+ L D G+R+ LSNPPFG Sbjct: 146 TGYELVDGTARLAAMNLLLHGI---GTADGPSLIEVRDALIAD--PGQRWSVVLSNPPFG 200 Query: 303 KKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 +K A +E ++ + S+ + FL H+ L + GRAA+VL Sbjct: 201 RKSSLTMVGADGREARDDVEIERQDFVVTTSNKQLNFLQHIMTIL----DINGRAAVVLP 256 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 + LF G A GE+ +RR LL++ + ++ LPT +F+ + + R+ E+ Sbjct: 257 DNVLFEGGA--GET-LRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFFDKRQANEQPWT 313 Query: 422 VQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY------VSRENGKFSRMLDYRTF 473 +L ++ N+ K+ + +D Y R + + Y Sbjct: 314 SKL----WVYDLRTNQHFTLKQNRLRRHHLDGFVDSYLTGKPREERVESERWKAFTYDDL 369 >gi|253569705|ref|ZP_04847114.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840086|gb|EES68168.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 472 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 96/547 (17%), Positives = 178/547 (32%), Gaps = 98/547 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + + SL +W A L F I L L+ + Sbjct: 1 MATNSSTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + + + G E +L L +NL I Sbjct: 51 MFGE-ESAIPTGYQWADLIAFDGLDLVKQYEETLKLLSE---LDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + +P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF AG IR+ LL++ + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS------ 465 + + ++ + + + + + Y +R + Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVETYDAENNPQG 407 Query: 466 -------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + R I ++P +D LA L ADI + + L+ Sbjct: 408 RWRKYPVDEIIARDKTSLDITWIKPGG---EVDDRSLAELMADIKDKSQTISRAVTELEK 464 Query: 519 LKPMMQQ 525 L +++ Sbjct: 465 LLANIEE 471 >gi|298483407|ref|ZP_07001584.1| type I restriction-modification system, M subunit [Bacteroides sp. D22] gi|299148888|ref|ZP_07041950.1| type I restriction-modification system, M subunit [Bacteroides sp. 3_1_23] gi|298270355|gb|EFI11939.1| type I restriction-modification system, M subunit [Bacteroides sp. D22] gi|298513649|gb|EFI37536.1| type I restriction-modification system, M subunit [Bacteroides sp. 3_1_23] Length = 476 Score = 192 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 83/467 (17%), Positives = 154/467 (32%), Gaps = 82/467 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + + L +W A L F I L L+ + Sbjct: 1 MAKSNSNEQGLTKKVWTLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DDENVK 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + ++ + E+ +++ G E +L L ++NL I Sbjct: 51 LLDE-ESAIPEGYRWENLIELDGLDLIGQYENTLKILSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMINEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + P + T+ DP CGTGGFL A +++ Sbjct: 150 GQYFTPRSLISAMVDV----------TRPQIGETVCDPACGTGGFLLAAYDYMKKQSQDK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 HG + P + + + + +D I +L K+ Sbjct: 200 GKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP-----IICQDSLEKE--PDIL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VNVILANPPFGTRPSGSVDINRSDFYVE-----------TKNNQLNFLQHIMLSLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF G AG IR+ LL + I+ LPT +F+ + + + Sbjct: 299 -GGRAAVVLPDNVLFEGGAG---EVIRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFT 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 R + + + + + + Y + Sbjct: 355 KG---SRTKDIWFYD----YRTDVKHTLATNPMQRHHLDDFVSCYHA 394 >gi|325990089|ref|YP_004249788.1| type I restriction-modification system, modification subunit [Mycoplasma suis KI3806] gi|323575174|emb|CBZ40836.1| Type I restriction-modification system, modification subunit [Mycoplasma suis] Length = 613 Score = 192 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 95/585 (16%), Positives = 193/585 (32%), Gaps = 82/585 (14%) Query: 10 SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 +L + +WK ++L K ++F +L L+ ++ + + + E+Y G + Sbjct: 3 TLEHRLWKACDNLRANSSLKESEFCMPVLGIIFLKYMDARYKKAKKKINEEYYQREGIIL 62 Query: 68 DLES-------FVKVAGYSFYN--------TSEYSLSTLGSTNTR------NNLESYIAS 106 E + + + YN S L + +N + IA+ Sbjct: 63 PEEEDDYKRLGVIMLPEGAQYNWILSLPEDISSKELKDVNGQPLNSLGEVLDNAMTLIAT 122 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 ++ + I F + I +L + + F ++ D + +IYE+ + +F Sbjct: 123 KTEKLRGIL--FGEYNRIPD----KILKGLLEIFDHEDIT---WEDDKLGSIYEYFLEQF 173 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 S V F TP +V++ +L T+ DP CG+GG + Sbjct: 174 ASYVKGEEGIFFTPPSLVNMIVNIL-----------EPTQGTVLDPACGSGGMFIAIKQY 222 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + G E +C+ + I L S ++ D Sbjct: 223 MDKHNLNCNEH--ITFWGHEKVEHNARLCLMNIFIHHLGSGKIAGGDD----ANSYYNDH 276 Query: 287 FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLM 340 + + Y L+NPPF + A GR GLP++S + + L++ Sbjct: 277 WGLNGKCDYVLANPPFNIVGVNAEAAEAA-------GRLPFGLPQVSKLEIKNSNFLWIS 329 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + + L G + S + + EIR ++E I+ ++ + F Sbjct: 330 YFYSYLNSTGKAGFVMPSITMSGTV--------DKEIRSKVVETKHIDLLINVAPKFFKS 381 Query: 401 T-NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 LW + +K +E KV I+A++ + + + +Y + Sbjct: 382 KFKGDCCLWFFNKQKPKEYENKVLFIDASNYYVPVDAGHNTWNEWQSKNLISTVQLYRGQ 441 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + +Y+ LR F + G L+A ++ F L + Sbjct: 442 VEKYIELISEYKEK-------LRNYSDKFSVLVEGDDYLKAFKEKKEQLIKDSEFELSSI 494 Query: 520 KPMMQQIYPYGWAES----FVKESIKSNEAKTLKVKASKSFIVAF 560 +++ E F + E + K + Sbjct: 495 TNRKEKMKLKQEWEEKHNSFDDAITVAKEFHWIYSKFGEGEYKDI 539 >gi|257452212|ref|ZP_05617511.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp. 3_1_5R] gi|317058755|ref|ZP_07923240.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. 3_1_5R] gi|313684431|gb|EFS21266.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. 3_1_5R] Length = 475 Score = 192 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 93/498 (18%), Positives = 175/498 (35%), Gaps = 86/498 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W L D + ++ + L+ + E Y Sbjct: 2 TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAY------ 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 ++ V G + N + +L LG + I + + Sbjct: 56 --RWKTLVAYEGIALKNHYQQALLDLGKELGQ--------------LGII----YRNAQT 95 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 R+E+ L K+ I+ + +V + ++YE L+ + SE GA + TPR ++ Sbjct: 96 RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234 ++ P + T+YDP GT GF+ +A ++ + + Sbjct: 154 AIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRNISQDYYGTAENPISEE 203 Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 V EL +TH + L+ + + QG TLS+ F Sbjct: 204 LSQKYKKVFSACELVQDTHRLGSMNALLHGIGGNFL--------QGDTLSEFGKQFSHFD 255 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG K ++ + + S+ + FL + L + Sbjct: 256 IILSNPPFGTKKGGERATRDD------------LVYATSNKQLNFLEVIYRSLNVTGKA- 302 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 RAA+V+ + LF G G EIR+ LL + I+ LPT +F+ + T + + Sbjct: 303 -RAAVVVPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFTRG 358 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 ++ K I DL T++ + G K ++ + + + RE + Sbjct: 359 ISDTNNTK--EIWYYDLRTNMPSFG-KTNPLSKEHFEEFERSFEKREEKEILERW----- 410 Query: 474 GYRRIKVLRPLRMSFILD 491 + + ++ + LD Sbjct: 411 --TLVSMEEIMKKEYSLD 426 >gi|150006642|ref|YP_001301386.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus ATCC 8482] gi|294775332|ref|ZP_06740854.1| N-6 DNA Methylase [Bacteroides vulgatus PC510] gi|149935066|gb|ABR41764.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus ATCC 8482] gi|294450789|gb|EFG19267.1| N-6 DNA Methylase [Bacteroides vulgatus PC510] Length = 472 Score = 192 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 96/546 (17%), Positives = 180/546 (32%), Gaps = 96/546 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + SL +W A L F I L L+ + Sbjct: 1 MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + + + + G E +L L ++NL I Sbjct: 51 MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + +P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAIVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF AG IR+ LL++ + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + + ++ + + + + + Y +R + + Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVETYDAE--NNP 405 Query: 472 TFGYRRIKVLRPL------------RMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 +R+ V L + +D LA L ADI + + L+ L Sbjct: 406 QGRWRKYPVDEILTRDKTSLDITWIKQGGEVDNRSLAELMADIKDKSQTISAAVVELEKL 465 Query: 520 KPMMQQ 525 +++ Sbjct: 466 LANIEE 471 >gi|288801958|ref|ZP_06407399.1| type I restriction-modification system, M subunit [Prevotella melaninogenica D18] gi|288335393|gb|EFC73827.1| type I restriction-modification system, M subunit [Prevotella melaninogenica D18] Length = 473 Score = 192 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 94/527 (17%), Positives = 172/527 (32%), Gaps = 81/527 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + + +L +WK A L G +TD+ + L+ + V E+ Sbjct: 1 MAKNISTEQALTKEVWKLATTLSGQGIGYTDYVTQLTYLLFLKM-----DAENVEVLEEA 55 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 A ++ G E +L+ L ++NL I Sbjct: 56 SAI-PEEYRWGQLKELDGLDLIAQYEKTLNVLSK---QDNLIGTI--------------- 96 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F+ +++K L K+ + + V IYE ++ + G + GA + T Sbjct: 97 FTKAQNKIDKPVYLKKVITMIDEHQWL--EMDGDVKGAIYEGILEKNGQDKKSGAGQYFT 154 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238 PR ++ L P + T+ DP CGTGGFL A +++ Sbjct: 155 PRPLIQAMIDCL----------QPKIGETVCDPACGTGGFLLAAYDYMKGQSQDKGKLDF 204 Query: 239 --ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 HG + P + + + + +D I +L K+ L Sbjct: 205 LNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IACEDSLEKE--PETLVDVIL 257 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG++ D + + + FL H+ L+ GGRA Sbjct: 258 ANPPFGERTAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GGRA 302 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+V+ LF A +R+ LL + + I+ LPT +F+ + + + + Sbjct: 303 AVVIPDDILFKDGAHEI---VRKKLLTDFNLHTILRLPTGIFYANGVKANVLFFTKGQPT 359 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476 + + + + + + + Y + + +R Sbjct: 360 K---DIWFYD----YRTNVKHTLVTTKLQRHHLDDFVACYNAATRTETYNEETNPAGRWR 412 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + L + DITW K + F LD L + Sbjct: 413 KYAADDIL---------ARDKTSLDITWIKAGGAEEQFTLDELMTNI 450 >gi|257465993|ref|ZP_05630304.1| Type I restriction enzyme StySPI M protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917149|ref|ZP_07913389.1| type I restriction enzyme StySPI M protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691024|gb|EFS27859.1| type I restriction enzyme StySPI M protein [Fusobacterium gonidiaformans ATCC 25563] Length = 475 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 93/498 (18%), Positives = 175/498 (35%), Gaps = 86/498 (17%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W L D + ++ + L+ + E Y Sbjct: 2 TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAY------ 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 ++ V G + N + +L LG + I + + Sbjct: 56 --RWKTLVAYEGIALKNHYQQALLDLGKELGQ--------------LGII----YRNAQT 95 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 R+E+ L K+ I+ + +V + ++YE L+ + SE GA + TPR ++ Sbjct: 96 RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234 ++ P + T+YDP GT GF+ +A ++ + + Sbjct: 154 AIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRNISQDYYGTAENPISEE 203 Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 V EL +TH + L+ + + QG TLS+ F Sbjct: 204 LSQKYKKVFSACELVQDTHRLGSMNALLHGIGGNFL--------QGDTLSEFGKQFSHFD 255 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG K ++ + + S+ + FL + L + Sbjct: 256 IILSNPPFGTKKGGERATRDD------------LVYATSNKQLNFLEVIYRSLNVTGKA- 302 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 RAA+V+ + LF G G EIR+ LL + I+ LPT +F+ + T + + Sbjct: 303 -RAAVVVPDNVLFEGGVG---KEIRQDLLNKCDVHTILRLPTGIFYSQGVKTNVLFFTRG 358 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 ++ K I DL T++ + G K ++ + + + RE + Sbjct: 359 TSDTNNTK--EIWYYDLRTNMPSFG-KTNPLSKEHFEEFERSFEKREEKETLERW----- 410 Query: 474 GYRRIKVLRPLRMSFILD 491 + + ++ + LD Sbjct: 411 --TLVSMEEIMKKDYSLD 426 >gi|29349926|ref|NP_813429.1| putative type I restriction enzyme StySJI M protein [Bacteroides thetaiotaomicron VPI-5482] gi|81842076|sp|Q89Z59|T1M_BACTN RecName: Full=Probable type I restriction enzyme BthVORF4518P M protein; Short=M.BthVORF4518P gi|29341837|gb|AAO79623.1| putative type I restriction enzyme M.BthVORF4518P [Bacteroides thetaiotaomicron VPI-5482] Length = 472 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 95/552 (17%), Positives = 176/552 (31%), Gaps = 93/552 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + + SL +W A L F I L L+ + Sbjct: 1 MATNSSTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + + + G E +L L +NL I Sbjct: 51 MFGE-ESAIPTGYQWADLIAFDGLDLVKQYEETLKLLSE---LDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + +P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF AG IR+ LL++ + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + + ++ + + + + + Y +R + + Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNR--VEIYDAENNP 405 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 +R+ V + + DITW K L L ++ Sbjct: 406 QGRWRKYPVDEII---------ARDKTSLDITWIKPGGEVDDRSLAELMADIKDKSQTIS 456 Query: 532 AESFVKESIKSN 543 E + +N Sbjct: 457 RAVTELEKLLAN 468 >gi|312869822|ref|ZP_07729964.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3] gi|311094668|gb|EFQ52970.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3] Length = 484 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 90/550 (16%), Positives = 184/550 (33%), Gaps = 86/550 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYL 60 S + +WK ++ L + + T L+ ++ + Sbjct: 1 MVMSNQEIVQQLWKESDVLRD--DGVTYQDYVTELTYILFLKM-------SKE---QNEE 48 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 A +S ++ G N L LG+ N S AI + Sbjct: 49 AEIPEKYRWDSLLQYEGLELMNFYRQLLLDLGNPQKTN---------SPRINAI-----Y 94 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +++ L KI + G++ + +YE L+ + +E GA + TP Sbjct: 95 DNASTSIDEPANLEKIIHDIDGLDWFSARQE--GLGALYEGLLEKNANETKSGAGQYFTP 152 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GS 232 R ++++ + P + L DP GT GF+ A +++++ Sbjct: 153 RPLINMMVRM----------TKPQVGERLNDPAAGTFGFMVAANDYLSEQTDEFFDLSQE 202 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 K G EL P TH + + + ++ QG +LS K F Sbjct: 203 DRKFEKEEAFSGMELVPNTHRLALMNQYLHGMDGRLD--------QGDSLSAAGKWMKNF 254 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPFG K ++ + + S+ + FL + N L+ + Sbjct: 255 DVVLTNPPFGTKKGGERATRDD------------LTYETSNKQLNFLQIIYNSLKTDGH- 301 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GRAA+V+ + LF A IR+ LL + I+ LPT +F+ + T + + Sbjct: 302 -GRAAVVVPDNVLF---ADGTGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTR 357 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---ENGKFSRMLD 469 + I D+ +R G KR +N+ + ++ + + + Sbjct: 358 G--ASDTDNTKEIWIYDMRHQMRTFG-KRNPLNEKDFAEFEKLFSADDLTKRKENWDKDK 414 Query: 470 YRTFGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +R+ + ++ +++ + + + + + Sbjct: 415 NPNGRWRKFTIDEIMKRPNTSLDISWMNEEEEHDNRSLKEILSEMNDKSTAISEAIAELN 474 Query: 524 QQIYPYGWAE 533 + + + Sbjct: 475 KALEGINDED 484 >gi|254470280|ref|ZP_05083684.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062] gi|211960591|gb|EEA95787.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062] Length = 519 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 92/490 (18%), Positives = 167/490 (34%), Gaps = 89/490 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 + S+ +W+ L + + + L L+ + +EK Sbjct: 2 NTNSIVQKLWRLCSVLRK--DGITYQQYVTELTYLLFLKMM---------QEKEKEEGAI 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLG-----------------STNTRNNLESYIAS 106 S + VK G L+TLG T +Y Sbjct: 51 PSGMRWNDLVKTDGLPQLELYRDLLTTLGTTSSRLGKDDELLRKPHETAVDAEKATYKDG 110 Query: 107 --FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + IFE ++ L L K+ ++ + + ++YE L++ Sbjct: 111 KRIPKMVQDIFE-----NSATFLRDPVNLNKLVTEIDKLDWY--DIERDQFGDLYEGLLQ 163 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + E +GA + TPR ++ + L+ P + DP GTGGFL A Sbjct: 164 KNAEETKKGAGQYFTPRVLIDVIVDLM----------QPQPGERIQDPATGTGGFLIAAD 213 Query: 225 NHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 ++ K HG E +T+ + + + + + + +I Sbjct: 214 RYMKARTDGYYDLGEEGAKFQKEQAFHGMENVRDTYRLLLMNLYLHDFD-------TSHI 266 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G TLS ++ L+NPPFG K E +S + Sbjct: 267 LAGDTLSPKGEGMEKVDVILTNPPFGPAGGKPTRDDLSE------------TANVSSYQL 314 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F+ H L+ GGRAAIV+ + LF G +R+ ++ + I+ LPT Sbjct: 315 PFVEHCIRGLKP----GGRAAIVIPDNVLFEDGRG---KALRQKMMRECDVHTILRLPTG 367 Query: 397 LFFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +F+ + T + L T E + + + + DL + + G K + ++ + Sbjct: 368 IFYAQGVKTNVIFLKKSTTVELASLKTDETKKLWVYDLRSQMPQFG-KTSPLTEEHFAEF 426 Query: 453 LDIYVSRENG 462 + Y + NG Sbjct: 427 VKAYGADANG 436 >gi|237721637|ref|ZP_04552118.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4] gi|229449433|gb|EEO55224.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4] Length = 476 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 153/467 (32%), Gaps = 82/467 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + + L +W A L F I L L+ + Sbjct: 1 MAKSNSNEQGLTKKVWTLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DDENVK 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + ++ + E+ +++ G E +L L ++NL I Sbjct: 51 LLDE-ESAIPEGYRWENLIELDGLDLIGQYENTLKILSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMINEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + P + T+ DP CGTGGFL A +++ Sbjct: 150 GQYFTPRSLISAMVDV----------TRPQIGETVCDPACGTGGFLLAAYDYMKKQSQDK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 HG + P + + + + +D I +L K+ Sbjct: 200 GKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP-----IICQDSLEKE--PDIL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VNVILANPPFGTRPSGSVDINRSDFYVE-----------TKNNQLNFLQHIMLSLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF G AG IR+ LL + I+ LPT +F+ + + + Sbjct: 299 -GGRAAVVLPDNVLFEGGAG---EVIRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFT 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + + + + + + Y + Sbjct: 355 KG---SGTKDIWFYD----YRTDVKHTLATNPMQRHHLDDFVSCYHT 394 >gi|254881455|ref|ZP_05254165.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 4_3_47FAA] gi|319642841|ref|ZP_07997479.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A] gi|254834248|gb|EET14557.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 4_3_47FAA] gi|317385585|gb|EFV66526.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A] Length = 472 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 85/471 (18%), Positives = 158/471 (33%), Gaps = 82/471 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + SL +W A L F I L L+ + Sbjct: 1 MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + + + + + G E +L L ++NL I Sbjct: 51 MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + +P M T+ DP CGTGGFL A +++ + Sbjct: 150 GQYFTPRPLIQAVVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG + P + + + + +D I +L K+ Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF A GE+ IR+ LL++ + I+ LPT +F+ + + S Sbjct: 299 -GGRAAVVLPDNVLFEAGA--GET-IRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + + ++ + + + + + Y +R Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVET 398 >gi|189463332|ref|ZP_03012117.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136] gi|189429951|gb|EDU98935.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136] Length = 477 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 84/464 (18%), Positives = 155/464 (33%), Gaps = 76/464 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRSAVRE 57 M + SL +W A L F I T L + + Sbjct: 1 MATNNATEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYL------------LLLK 43 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + + GY + L +L + E + S+ + + Sbjct: 44 MDAENVEMFGEESAI--PTGYQW-----MDLISLDGLDLVKQYEDTLKQLSEQ-ENLIGT 95 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + +++K L K+ + + V IYE ++ + G + GA + Sbjct: 96 IYTKAQ-NKIDKPVYLKKVISMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGAGQY 152 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR ++ + +P M T+ DP CGTGGFL A +++ D ++ + Sbjct: 153 FTPRPLIKAMVDCI----------APQMGETVCDPACGTGGFLLTAYDYMKDQSANKEKR 202 Query: 238 ---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 HG + P + + + + +D I +L K+ Sbjct: 203 DFLRNKALHGVDNTPLVVTLASMNLYLHGVGTDRSP-----IVCEDSLEKE--PSTLVDV 255 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG + D + + + FL H+ L+ GG Sbjct: 256 ILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GG 300 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF AG IR+ LL++ + I+ LPT +F+ + + + + Sbjct: 301 RAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFTKGQ 357 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + +V + + + + + Y S Sbjct: 358 PTK---EVWFYD----YRTDVKHTLATNKLERHHLDDFISCYNS 394 >gi|153000502|ref|YP_001366183.1| N-6 DNA methylase [Shewanella baltica OS185] gi|151365120|gb|ABS08120.1| N-6 DNA methylase [Shewanella baltica OS185] Length = 500 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 98/516 (18%), Positives = 184/516 (35%), Gaps = 55/516 (10%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L + I E + + L + Sbjct: 33 LLFLKVFDA-----QEEQLELELDDYSTPIPSEFLWRNWAADNEGITGDELLDFVNDELF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 +L++ A N + FS ++ LL ++ + I+ D+ + + Sbjct: 88 PDLKNLTAPIDKNPRGYVVKAAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE +++ S + A +F TPR + A+ P + ++ DP CGTG Sbjct: 147 LYEQILKDLQSAGN--AGEFYTPRAITKFIVAV----------TDPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H +C M++ +E Sbjct: 195 GFLACAFDHVKANYVKTADDHQTLQQQIHGVEKKQLPHLLCTTNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K + ++NPPFG ++D +EK + R + +D Sbjct: 249 QIKHGNTLNKPLSSWDEDIDVIITNPPFGG---TEEDGIEKNFPSEFQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LFL + L NG GGRAA+VL LF ++I++ LLE + IV Sbjct: 300 ---LFLQLIIEVLAPATNGKGGRAAVVLPDGTLFGEGVK---TKIKKMLLEECNLHTIVR 353 Query: 393 LPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 LP +F + T I T + + + V + + K + + ++ Sbjct: 354 LPNGVFNPY-TGIKTNILFFTKGTPTKH---VWFYE--HPYPAGVKNYNKTKPMKFEEFE 407 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 L + +G F+ ++ ++ + + ++ LD E + Sbjct: 408 TELVWWGDEADG-FAARVENE--QAWKVSIDDIIARNYNLDIKNPHVGEVVSHDPQALLA 464 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 + ++ + Q+ A + E K Sbjct: 465 DYAKQQADIQALRDQLKGILSAALSSPSAASKGEGK 500 >gi|282900511|ref|ZP_06308456.1| Type I restriction-modification system methyltransferase subunit [Cylindrospermopsis raciborskii CS-505] gi|281194611|gb|EFA69563.1| Type I restriction-modification system methyltransferase subunit [Cylindrospermopsis raciborskii CS-505] Length = 187 Score = 191 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 3/177 (1%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + NFIW A+ + FK + VILPFT+LRRLEC L+PT+ V E Y + Sbjct: 2 QNFGEKVNFIWSIADLIRDTFKRGKYQDVILPFTVLRRLECVLQPTKVEVLEAYDHYKNK 61 Query: 66 NIDLE-SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 +L+ K +G++FYN++ Y L + NL+ YI SFS N + + E FDF + Sbjct: 62 LDNLDSFLCKKSGFAFYNSAPYDFQKLLDDPKHLAANLKLYINSFSANMREVLEKFDFPN 121 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 TI +LE++ LL+ + + F I+LHPD V + M I+E LIR+F + E + T Sbjct: 122 TIDKLEQSELLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFT 178 >gi|148652933|ref|YP_001280026.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1] gi|148572017|gb|ABQ94076.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1] Length = 302 Score = 191 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 104/319 (32%), Gaps = 39/319 (12%) Query: 1 MTEFTGS------AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54 MT T S + + +W + G + IL L+ L Sbjct: 1 MTSATSSMSTPISQSEINKAVWNACDTFRGVISADTYKDFILTMLFLKYLSDVYRDEHDT 60 Query: 55 VREKY--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + +Y + + FV G SF++ E L + + + K Sbjct: 61 LMAEYGDADLVKELMSNQRFVLPDGASFWDLYEQRHQPGNGQRIDEALHAIEEANGNKLK 120 Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFG 167 +F+D F+ +K LL + ++F L+ V+ N YE LI+ F Sbjct: 121 NVFQDISFNTDRLGNEKKKNELLRHLLEDFGKPMLNLSPSRVGSLDVIGNAYEFLIKHFA 180 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 ++ A +F TP +V L +L +P + DP CG+G L Sbjct: 181 ADSGASAGEFYTPPEVSSLLATIL----------NPVAGDAICDPACGSGSLLIKCGAMA 230 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---- 283 GQE T A+ M + + + I+ G TL Sbjct: 231 RKNSGS----KNYELFGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTLRYPLL 279 Query: 284 -KDLFTGKRFHYCLSNPPF 301 D +F +NPPF Sbjct: 280 LDDKGHLLQFDVVTANPPF 298 >gi|240169988|ref|ZP_04748647.1| N-6 DNA methylase [Mycobacterium kansasii ATCC 12478] Length = 497 Score = 191 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 92/485 (18%), Positives = 158/485 (32%), Gaps = 79/485 (16%) Query: 11 LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 L + +W L D ++ + + L+ Sbjct: 7 LVDKLWAYCNVLRDDGVGVIEYTEQLTYLLFLKM------------------------AH 42 Query: 70 ESFVKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSD---NAKAIFEDFDFSST 123 E + EYS L T+ + + IF + Sbjct: 43 ERATRKLNPQQIVPDEYSWQKLLDAEGTDLEVQYTKILVGLAQQPGTLGTIFRKAQ--NR 100 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I K L I + + YE L+ + S+ GA + TPRD+ Sbjct: 101 IQDPAKLKRL--IVDLIDKENWSASGTD--LKGDAYEALLSKGASDKGSGAGQYFTPRDL 156 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP- 242 + ++ P + DP CGTGGFL A H + Sbjct: 157 IRAIVDVI----------DPTPADEVVDPACGTGGFLLVAHEHAVQGAENLTPTKRKHLR 206 Query: 243 ----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G EL T + +L+ + D I+ L D G+R+ L+N Sbjct: 207 DDFVTGYELVDATARLAAMNLLLHGI---GTADGDSLIEVRDALISD--PGRRWSVVLTN 261 Query: 299 PPFGKKWEKDKDAVEKE--HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 PPFG+K + ++ E+ R + S+ + FL H+ L + GRA Sbjct: 262 PPFGRKSSLTMVGADGREVREDVEIERQDFVVT-TSNKQLNFLQHIMTIL----DINGRA 316 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF G A GE+ R+ L + D + I+ LPT +F+ + + + Sbjct: 317 AVVLPDNVLFEGGA--GETLRRKLLADFD-LHTILRLPTGIFYAQGVKANVLFFDRKPAS 373 Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY------VSRENGKFSRML 468 E+ +L ++ N+ K+ + + +D Y R + + Sbjct: 374 EQPWTTKL----WVYDLRTNQHFTLKQNPLRRHHLDEFVDFYLSGKPRDERVESERWKSF 429 Query: 469 DYRTF 473 Y+ Sbjct: 430 TYKEL 434 >gi|257463919|ref|ZP_05628305.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp. D12] gi|317061446|ref|ZP_07925931.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12] gi|313687122|gb|EFS23957.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12] Length = 475 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 95/470 (20%), Positives = 169/470 (35%), Gaps = 79/470 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +W L D + ++ + L+ + E Y Sbjct: 2 TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAY------ 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 ++ V G S N + +L L L I + + Sbjct: 56 --RWKTLVGYEGISLKNNYQQALLDL-----GKQLGQL---------GII----YRNAQT 95 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 R+E+ L K+ I+ + +V + ++YE L+ + SE GA + TPR ++ Sbjct: 96 RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234 ++ P + T+YDP GT GF+ +A ++ + Sbjct: 154 SIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRKISQDYYGTAENPISEE 203 Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 V EL +TH + + L+ +E + QG TLS+ RF Sbjct: 204 VSQKYKKVFSACELVQDTHRLGMMNALLHGIEGNFL--------QGDTLSEFGKQFSRFD 255 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG K ++ + + S+ + FL + L + Sbjct: 256 IILSNPPFGTKKGGERATRDD------------LVYATSNKQLNFLEVIYRSLNVTGKA- 302 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 RAA+VL + LF G G EIR+ LL + I+ LPT +F+ + T + + Sbjct: 303 -RAAVVLPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFTRG 358 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 ++ K I DL T++ + G K ++ + + + RE + Sbjct: 359 TSDTNNTK--EIWYYDLRTNMPSFG-KTSPLSKEHFEEFERSFEKREEKE 405 >gi|260773573|ref|ZP_05882489.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio metschnikovii CIP 69.14] gi|260612712|gb|EEX37915.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio metschnikovii CIP 69.14] Length = 510 Score = 191 bits (485), Expect = 4e-46, Method: Composition-based stats. Identities = 105/581 (18%), Positives = 179/581 (30%), Gaps = 101/581 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--LEPTRSAVREKYLAFGG 64 ++ IW L GD T + + L + A Sbjct: 2 KQDNIIQKIWSLCNILRGD-----------GITYYQYVSELSYLLFLKIAQENGSEKLIP 50 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 G + L+ LG++ N + I +F +F Sbjct: 51 KGYRWVDLESYKGDGLLGFYQEMLTHLGAS-VENEVVKAIYAFPTT---VFSH------- 99 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 + L + S IE H V ++Y LI + + GA + TPR +V Sbjct: 100 -----SENLKAVIDGISKIEWH--QVGKDGFGDVYSGLIDKSAQDTRSGAGQYFTPRSLV 152 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH- 243 + L+ P + + DP G+GGFL A +++ + K + Sbjct: 153 NTIVRLI----------QPNLGELIQDPATGSGGFLVSADSYIRNKYLREKYKANPPKYQ 202 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 G E+E T +C+ + L+ NI G L+ D+ ++NPPFG Sbjct: 203 GVEIEKNTRRICLMNTFLHELD--------ANIIYGDALTDDVAELAEADVIIANPPFGN 254 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K + R P + + + FL H+ L+ GGRAA+VL + Sbjct: 255 KAGGQRPL-----------RNDIPFPNV-NKQLAFLQHIYLGLKP----GGRAAVVLPDN 298 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G +E+RR L+ + I+ LPT +F+ + T + + + K Q Sbjct: 299 VLFEAGVG---TEVRRDLMNKCNLHTILRLPTGIFYAQGVNTNVLFFTKG---SVKDKYQ 352 Query: 424 LINAT------DLWTSIRNEGKKRRII-------------NDDQRRQILDIYVS------ 458 + T DL T++ + G KR D ++ Sbjct: 353 EESCTQNVWVYDLRTNMPSFG-KRTPFGNSDIGFTPEELGTDPHMGAFEKVFGDKPDGTS 411 Query: 459 -RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R G+FS + + V R L + WL Sbjct: 412 KRTEGEFS--FGAQEIEVDKDAVEENQRGDDRLAHSRWRCFSRKWIANTKGDSLDISWLK 469 Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 + + + + L + + Sbjct: 470 DKNSIDVTGLSEPDVLAQEAKEELEAALRELDGLLTALEMN 510 >gi|300361583|ref|ZP_07057760.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus gasseri JV-V03] gi|300354202|gb|EFJ70073.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus gasseri JV-V03] Length = 483 Score = 191 bits (485), Expect = 4e-46, Method: Composition-based stats. Identities = 94/549 (17%), Positives = 184/549 (33%), Gaps = 88/549 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63 + + +W L D + I T L+ ++ + Sbjct: 2 NNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKM-------SKE---QGQEDDI 49 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ V G N L LG+ I + NA + Sbjct: 50 PEKYHWDNLVSKEGLELKNFYRQLLLDLGNPEIVK--SERINAIYANASTAID------- 100 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + L KI K+ ++ + ++YE L+ + SEV GA + TPR + Sbjct: 101 -----EPANLEKIIKDIDELDWFSAREE--GLGDLYEGLMEKNASEVKSGAGQYFTPRVL 153 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235 +++ + P + DP GT GF+ A ++ D + Sbjct: 154 INMMVKM----------TKPEIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSTLSPDQYD 203 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL P TH + + + R++ QG +LS + K F Sbjct: 204 FQVEDAFSGMELVPNTHRLAIMNEYLHRMDGRLD--------QGDSLSANGKWMKGFDVV 255 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG K ++ + + S+ + FL + N L+ R Sbjct: 256 LTNPPFGTKKGGERATRDD------------LTYETSNKQLNFLQIIYNSLKSDGKA--R 301 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+V+ + LF A +IR+ LL + I+ LPT +F+ + T + + ++ Sbjct: 302 AAVVVPDNVLF---ADGVGEKIRQDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGES 358 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY---VSRENGKFSRMLDYRT 472 ++ K D+ +R+ G KR +N+ ++ + + Sbjct: 359 DKDNTK--ETWIYDMRHQMRSFG-KRNPLNNKDFEDFEKLFCVDDRAQRKETWDKEKNPN 415 Query: 473 FGYRRIKVLRPLRM-------SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +R+ + L+ S++ D+ + +++ D + + + Sbjct: 416 GRWRKFTIDEILKRPNTSLDISWMNDEEEHDDRSLNEILSEMNE-KSKAISDAIAELNKA 474 Query: 526 IYPYGWAES 534 + +E Sbjct: 475 LEGIDDSED 483 >gi|258592717|emb|CBE69026.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [NC10 bacterium 'Dutch sediment'] Length = 503 Score = 190 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 84/452 (18%), Positives = 160/452 (35%), Gaps = 65/452 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + LE R +KY AG + SL + Sbjct: 50 MFLKCFDD-LEQRREVTEKKYRLAIEPPYRW---RDWAGNPDKGLTGESLLKFINDELFP 105 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 L S + + +A+ + F T R+ LL + + + + ++++ Sbjct: 106 YLRSLTGTVAGDARDVLAAV-FKETYNRMLSGYLLRDVVNLVNRLNF-NSSDDIHTLAHL 163 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE ++R + +F TPR V+ L + +P + + DP GTGG Sbjct: 164 YESMLREMRDAAG-DSGEFYTPRPVIRLIVQQV----------NPRLGERVLDPAAGTGG 212 Query: 219 FLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 FL ++ H+ + G E +P + + + +L+ L+ N Sbjct: 213 FLVESYEHLKAQVKSVEDRRRLQEDTLFGIEKKPMPYLLGMMNLLLHGLD-------RPN 265 Query: 276 IQQGSTLSKD----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + + + L +G R+H ++NPPFG E + G F + Sbjct: 266 LLRDNALRNPLVQITDSGARYHVIMTNPPFG-----------GEEEKGVQDNFPDAT-RT 313 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S+ ++LFL + L+ GGR +V+ + LF + +++ LLE+ + IV Sbjct: 314 SETALLFLQFIMRSLK----RGGRCGMVVPNGTLFGDGVC---ARVKKELLEHFNLHTIV 366 Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR----IIND 446 LP +F T+I T L + + EG+K + Sbjct: 367 RLPNGVFAPYTSIPTNLLFFDRSGPTKEI---------WYYEQPLPEGRKNYTKTQPLQF 417 Query: 447 DQRRQILDIYVSRENGKFSRMLD-YRTFGYRR 477 ++ + + +RE + + Y + Sbjct: 418 EEFAPCVAWWKNREENDRAWKVSINNVLKYDK 449 >gi|302560831|ref|ZP_07313173.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000] gi|302478449|gb|EFL41542.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000] Length = 503 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 88/490 (17%), Positives = 175/490 (35%), Gaps = 78/490 (15%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVILP----FTLLRRLECALEPTRSAV 55 S + LA+ I + + GD LP L+ + +E A+ Sbjct: 15 TSQSRLASLIKSARDTMRKDAGMNGDLDR-------LPQLSWLLFLKAFDGRVEQEGEAL 67 Query: 56 R-EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + Y E + V + S L + + +L + +++ + + Sbjct: 68 DPDGYRRAIEEPYRWEDWATVPDF-----SGDELKSFVNDKLIPHLAGLVGDDAEDPRNV 122 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F + R++ LL + + I M+ +YE +++ G+ Sbjct: 123 ISTI-FKDVVNRMQSGTLLRDLVDIVNQIHFV-SADDIHTMAFVYESILKEMRDVAG-GS 179 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR V + ++ DP GTGGFL A + Sbjct: 180 GEFYTPRPVNRFMVQQSFLE----------LGESILDPASGTGGFLVQAYEALKGQVKTD 229 Query: 235 KIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGK 290 L G E +P + + +L+ ++ + +I++GS L + + Sbjct: 230 TQRRRLHKDIRGIEKKPLPYLLGSMNLLLHGID-------APHIRRGSALLEMRNSNAAD 282 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + L+NPPFG + ++ V K +G + + + LFL + ++L+ Sbjct: 283 KVDVVLTNPPFGGE---EEATVVKAFPDGF---------RTQETAWLFLYSILDQLK--- 327 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GGR AIVL + LF S ++I++ L+++ + +V LP +F T I + + Sbjct: 328 -LGGRCAIVLPNGSLFAVGENSIGAKIKKKLMKDCNLHTVVRLPQGVFAPYTQIPSNILF 386 Query: 410 LSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SRENG 462 + +V L +T K + + + +D + RE G Sbjct: 387 FEKTGPTQEVWFYEVPLPEGRRGYT-------KTKPMRFEDFESCVDWWGGKQREGREVG 439 Query: 463 KFSRMLDYRT 472 + + ++ Sbjct: 440 EQAWVVPASD 449 >gi|124006763|ref|ZP_01691594.1| type I restriction enzyme [Microscilla marina ATCC 23134] gi|123987671|gb|EAY27371.1| type I restriction enzyme [Microscilla marina ATCC 23134] Length = 539 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 188/486 (38%), Gaps = 79/486 (16%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY---- 81 +F I+ T L + L V++ ++ LE+ + Sbjct: 30 DGNEFK--IITQTFLYKFLNDKFI---YEVKKLDEGIANADKPLEALAATPAQDYELLLL 84 Query: 82 ----NTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIF-------EDFDFSS 122 NT+ + + L N ++ ++ + + IF E Sbjct: 85 QLPANTARLAPAHLIPALYARQNEANFADSFDATLQDIAKANNEIFSVKTGQDERIVLFD 144 Query: 123 TIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFM 178 ++R ++ I + I+E+LI+ + + ++ Sbjct: 145 NLSRYVTDKRDDFCRAIVNKLVDFSFEHIFEEKFDFYATIFEYLIKDYNTNSGGKYAEYF 204 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V + ++ + + T YDP+ G+G L + + + + Sbjct: 205 TPHAVAKIMARCMVHGEVSNV--------TCYDPSAGSGTLLMNLAHQIGEN-------- 248 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294 + Q++ ++ + +++ + NI +G+T+S+ ++F Y Sbjct: 249 RCTIYSQDISQKSSGLLRLNLIL-----NDLVHSLPNIVKGNTISEPYHKEGNALRQFDY 303 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLE 347 +SNPPF + +DA++ + RF G+PK+ + +LFL H+ + L+ Sbjct: 304 IVSNPPFKLDFSDMRDALDTKANRE---RFFAGVPKVPNKKKESMAIYLLFLQHIMHSLK 360 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+AAIV+ + F + +IR+ L++ ++ ++++P+++F T + Sbjct: 361 P----NGKAAIVVPTG--FITAQSGIDKKIRQRLVDERMLAGVISMPSNIFANTGTNVSI 414 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 L + +V LI+A+ L ++ +R +++ ++ QI++ + +++ FS Sbjct: 415 VFLDR----ANKDEVVLIDASGLGEKVKEGKSQRTVLSTEEEDQIIETFNAKKELDDFSV 470 Query: 467 MLDYRT 472 ++ Y Sbjct: 471 IVSYDD 476 >gi|261855230|ref|YP_003262513.1| Site-specific DNA-methyltransferase (adenine-specific) [Halothiobacillus neapolitanus c2] gi|261835699|gb|ACX95466.1| Site-specific DNA-methyltransferase (adenine-specific) [Halothiobacillus neapolitanus c2] Length = 484 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 83/470 (17%), Positives = 162/470 (34%), Gaps = 77/470 (16%) Query: 38 FTLLRRLECALEPTR--SAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLG 92 L+ L+ LE + A E Y +++ + ++ Sbjct: 32 LLFLKYLDS-LERDKAIEAQLEGKTYTPILDEAYRWDAWAAPKDATGVIDPNAAMTGDDL 90 Query: 93 STNTRNNLESYIASFSD----------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 L Y+ F IF + ++ L +I + Sbjct: 91 RDFVDRKLFPYLHGFKQRAAGPNTLEYKIGEIFGEIK-----NKIHSGYNLREIIDHIDE 145 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + +S++YE I+ G ++ TPR ++ ++ + Sbjct: 146 LRFG-SQIEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMVRVV----------A 193 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAG 258 P + +YD G+ GFL +A +++ + K +G+E + + + + Sbjct: 194 PQIGERIYDGAVGSAGFLCEAFDYLKSQPNRTTADIKTLQERTFYGKEKKSLAYVIAIMN 253 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + NI +TL++ D+ RF L+NPPFG K K+ Sbjct: 254 MILHGIE-------APNIVHTNTLAENLADVQDKDRFDIILANPPFGGKERKEVQQNFPI 306 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + + + LFL H L+ GGRAA+V+ ++ L N S Sbjct: 307 --------------RTGETAFLFLQHFIKLLK----AGGRAAVVIKNTFLSNTDNAS--V 346 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ LLE+ + ++ +P F + T + + QL R Sbjct: 347 SLRKLLLESCNLHTVLDMPGGTFLGAGVKTVVLFFEKGAPTRQVWYYQL-------DPGR 399 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD--YRTFGYRRIKVLRP 483 N G K +ND + +++ + + S +D + V P Sbjct: 400 NMG-KTNPLNDADLAEFIELQKTFADSPKSWRVDAATLDTTTYDLSVKNP 448 >gi|293369116|ref|ZP_06615710.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f] gi|292635699|gb|EFF54197.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f] Length = 384 Score = 190 bits (482), Expect = 7e-46, Method: Composition-based stats. Identities = 82/435 (18%), Positives = 148/435 (34%), Gaps = 78/435 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54 M + + L +W A L F I L L+ + Sbjct: 1 MAKSNSNEQGLTKKVWTLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DDENVK 50 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 + ++ + E+ +++ G E +L L ++NL I Sbjct: 51 LLDE-ESAIPEGYRWENLIELDGLDLIGQYENTLRILSE---QDNLIGTI---------- 96 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 ++ +++K L K+ + + + V IYE ++ + G + GA Sbjct: 97 -----YTKAQNKIDKPVYLKKVITMINEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR ++ + P + T+ DP CGTGGFL A +++ Sbjct: 150 GQYFTPRSLISAMVDV----------TRPQIGETVCDPACGTGGFLLAAYDYMKKQSQDK 199 Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 HG + P + + + + +D I +L K+ Sbjct: 200 GKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP-----IICQDSLEKE--PDIL 252 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPFG + D + + + FL H+ L+ Sbjct: 253 VNVILANPPFGTRPSGSVDINRSDFYVE-----------TKNNQLNFLQHIMLSLKT--- 298 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGRAA+VL + LF G AG IR+ LL + I+ LPT +F+ + + + Sbjct: 299 -GGRAAVVLPDNVLFEGGAG---EVIRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFT 354 Query: 412 NRKTEERRGKVQLIN 426 R + + Sbjct: 355 KG---SRTKDIWFYD 366 >gi|288947722|ref|YP_003445105.1| Site-specific DNA-methyltransferase (adenine-specific) [Allochromatium vinosum DSM 180] gi|288898238|gb|ADC64073.1| Site-specific DNA-methyltransferase (adenine-specific) [Allochromatium vinosum DSM 180] Length = 487 Score = 190 bits (482), Expect = 7e-46, Method: Composition-based stats. Identities = 89/465 (19%), Positives = 160/465 (34%), Gaps = 72/465 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+E T + + +W L + + + T L L+ E + Sbjct: 1 MSE-TVTR-DIVAKLWNLCHILRD--DGVTYNEYVTELTFLLFLKMMRETGHESRL---- 52 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 E G L LGST ++ + I F Sbjct: 53 ---PLGYRWEELASRTGLDQLEYYRDLLLNLGSTKKTHD------------QTILSI--F 95 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +L K L + ++ + N+YE L+ + +E GA + TP Sbjct: 96 ADANTKLRKPANLKALTTAIDKLDWFEAREE--GLGNLYEGLLEKNAAEKKSGAGQYFTP 153 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R ++ L+ P + DP GTGGFL A +++ + Sbjct: 154 RPLIDCLVRLM----------KPKPGEVIQDPAAGTGGFLVAADHYMKQNDKFFDLDEKE 203 Query: 241 VPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + G EL P+ H +C+ +++ +E TLS D + Sbjct: 204 ILFQQYSAYKGAELVPDAHRLCLMNLILHGIEGTVTCS--------DTLSPDGLALGKAD 255 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG K + + S+ + F+ H+ L+ G Sbjct: 256 LILSNPPFGTK-KGGGKPNRADFSITSD---------TSNKQLAFVEHIVRALKK----G 301 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GRAA+V+ + LF G +R W++E + I+ LPT +F+ + T + + Sbjct: 302 GRAAVVVPDNVLFEDNTG---RRLRTWMMELCDLHTILRLPTGIFYAQGVKTNVLFFTRG 358 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 +T++ + + DL ++ G K R + + + + Sbjct: 359 QTDKANTES--VWVYDLRANMPAFG-KTRPLTVKDFEEFEAAFGN 400 >gi|262066435|ref|ZP_06026047.1| type I restriction enzyme StySPI M protein [Fusobacterium periodonticum ATCC 33693] gi|291379862|gb|EFE87380.1| type I restriction enzyme StySPI M protein [Fusobacterium periodonticum ATCC 33693] Length = 474 Score = 190 bits (482), Expect = 8e-46, Method: Composition-based stats. Identities = 92/500 (18%), Positives = 171/500 (34%), Gaps = 94/500 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + ++ IL L+ L + Sbjct: 2 TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKML------------AEQDNE 46 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--DNAKAIFEDFDF 120 + E +L L + + + S +N AI + Sbjct: 47 AEVGVPEEYRWN------------TLVKLDGLELKTTYQKALIDLSQKENNLAII----Y 90 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + +E+ L KI ++ + ++ ++YE L+ + SE GA + TP Sbjct: 91 RNAKTNIEEPANLKKIFSEIDKMDWY--SMDKEDFGDLYEGLLEKNASEKKSGAGQYFTP 148 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK----- 235 R ++ + P + + DP GT GF+ A ++ + + Sbjct: 149 RVLIDTIVKV----------TKPQLKERICDPASGTLGFIISANRYIKEKNDDYYGISEE 198 Query: 236 ---IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 EL P+TH + + L+ +E + QG TLS K F Sbjct: 199 DYAFQKKEAFSACELVPDTHRLGIMNALLHGVEGNFL--------QGDTLSATGTQLKNF 250 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 LSNPPFG K ++ + + S+ + FL + L L Sbjct: 251 DLILSNPPFGTKKGGERATRDD------------LVFSSSNKQLNFLEIIYRSLNLTGRA 298 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 RA +VL + LF G G +IR+ LL + I+ LPT +F+ + T + Sbjct: 299 --RAGVVLPDNVLFEGGIG---KDIRQDLLNKCNVHTILRLPTGIFYAQGVKTNVLFFDR 353 Query: 413 RKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K++ K + + L T++ N G K + + + + + + E + Sbjct: 354 AKSDIGNTKDIWFYD---LRTNMPNFG-KTTPLTEKYFEEFISTFDNDEEKEKLERW--- 406 Query: 472 TFGYRRIKVLRPLRMSFILD 491 +I + ++ + LD Sbjct: 407 ----TKISIDEVIKKDYSLD 422 >gi|312115848|ref|YP_004013444.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100] gi|311220977|gb|ADP72345.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100] Length = 482 Score = 189 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 89/499 (17%), Positives = 175/499 (35%), Gaps = 63/499 (12%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ L R + Y I + + ++ + Sbjct: 33 LFLKYLHDLESERRDRAELEGKDYKPIIDGQIRWDQWAAPKKNGQFDHNTALTGDDLVDF 92 Query: 96 TRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 +L Y+A F + A I F+ ++ +L + + + Sbjct: 93 VDRSLFPYLARFHERATGPDTIEYKIGEVFTELRSKFRSGYILRDVLEIVDSLHFKTQA- 151 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +S +YE IRR G ++ TPR ++ ++ +P + T+Y Sbjct: 152 DKHELSALYETRIRRMG-NAGRNGGEYYTPRPLIRAMIRVV----------APKIGETIY 200 Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 D G+ GFL +A +++ S ++ +GQE + + + + M++ +E Sbjct: 201 DGAVGSAGFLCEAYDYLRRPNISASDYETLQRRTFYGQEKKSLAYIIGIMNMILHGIE-- 258 Query: 268 PRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + NI + ++L++ D R L+NPPFG ++ V++ Sbjct: 259 -----APNIVRTNSLNENVLDYQEKDRHDIVLANPPFGG---GERREVQQNFPI------ 304 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 K + + LFL H KL GGRAA+V+ ++ L N S +RR LLE+ Sbjct: 305 -----KSGETAYLFLQHFIRKLR----AGGRAAVVIKNTFLSNTDNAS--VALRRELLES 353 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + I+ P F + T + + R QL+ + K + Sbjct: 354 CNLHTILDCPQGTFQGAGVKTVVLFFQKGEATRRIWYYQLVPGRSMG--------KTNPL 405 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 NDD + +++ G S ++D T ++ + + E I Sbjct: 406 NDDDMAEFVELQRGFVTGPKSWIVDIAT--VDAKTFDLSVKNPNAPEAEAMRSPEEIIDA 463 Query: 505 RKLSPLHQSFWLDILKPMM 523 + L+ ++ ++ Sbjct: 464 ILARDAETAEILERIRGLL 482 >gi|330814745|ref|YP_004362920.1| N-6 DNA methylase [Burkholderia gladioli BSR3] gi|327374737|gb|AEA66088.1| N-6 DNA methylase [Burkholderia gladioli BSR3] Length = 474 Score = 189 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 95/512 (18%), Positives = 171/512 (33%), Gaps = 83/512 (16%) Query: 32 GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 G L+ + G+ F + Sbjct: 31 GDYTFAMLFLKCIS-----------------EGALQSSTVLTIPDASRFESLYTSRFQAG 73 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTV 150 + L + + + + +FE F S+ E A L ++ + F+ L Sbjct: 74 QQGHVDEAL-ALLEAANPTLGGVFEQIRFGSSGLGNEYADRLIRRLIEEFADDALCFRGT 132 Query: 151 PDRV---MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 V + + LI E ++D TP ++ + + ++ SP Sbjct: 133 AADVAPCVDFACDTLI-DLAFEARRRSDDSFTPTEIAGVVSRIV----------SPVQGE 181 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 T+ DP CG G FL V L GQE++ T A+ + +R Sbjct: 182 TVCDPCCGVGTFLVACQRRV---------DGDLGLFGQEMDGRTWAIAKMNLFMRG---- 228 Query: 268 PRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 L + I+ G TL ++F +S PP G + + E G Sbjct: 229 ---QLEQQIEWGDTLRYPRLLDSEGKLRKFDVVVSMPPLGARAWGQE-----EAIYDHYG 280 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 R+ G+P F+ H+ L+ GR A+V+ LF G A E +IR LL Sbjct: 281 RYRRGIPPRFSPEFAFISHMVETLDPLH---GRLAVVVPFGVLFRGAA---EKQIRERLL 334 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 +L++A++ALP L T+I + +L + V I+A + + GK R Sbjct: 335 RENLVDAVIALPPRLLGHTSIPLAIMVLRTGRAVS---DVFFIDAGRAYEA----GKTRN 387 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 ++ + +I Y R++ F R++ + L+ + Sbjct: 388 VLTEQHIERIEHTYRERQDVPR--------FA-RKVSIEEIFSHETSLNVARYVDVTEVE 438 Query: 503 TWRKLSPL--HQSFWLDILKPMMQQIYPYGWA 532 L+ L + F ++ L + ++ Sbjct: 439 APVNLAALNEERQFLIEELTELEARMSVLLSR 470 >gi|253583389|ref|ZP_04860587.1| type I restriction enzyme StySPI M protein [Fusobacterium varium ATCC 27725] gi|251833961|gb|EES62524.1| type I restriction enzyme StySPI M protein [Fusobacterium varium ATCC 27725] Length = 479 Score = 189 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 93/502 (18%), Positives = 175/502 (34%), Gaps = 93/502 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 ++ + +W L D + ++ IL L+ + + KY Sbjct: 2 TSNEVVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKMSSELENEEKIGIPLKY--- 55 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + K+ G N + L LG I I + + Sbjct: 56 -----RWKELAKLEGIELKNNYQKCLLDLGQ----------IDGKL----GII----YRN 92 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++E+ L KI + I+ + +V + ++YE L+ + SE GA + TPR Sbjct: 93 AQTKIEEPANLKKIFNEINKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRV 150 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------- 233 ++ ++ P + + DP GT GF+ +A ++ Sbjct: 151 LIDSIVRII----------KPELGERICDPAAGTFGFIIEADKYLRRKYDDYFGTKERPV 200 Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + EL P+TH + + L+ + N QG +LS+ Sbjct: 201 TDEEREFQATEAFSACELVPDTHRLGIMNALLHGING--------NFIQGDSLSETGKQL 252 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + F LSNPPFG K ++ + + + S+ + FL + L+ Sbjct: 253 RNFDLILSNPPFGTKKGGERVTRDD------------LVHETSNKQLNFLQIIYRSLKTT 300 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 RAA+++ + LF G G +IR LL + ++ LPT +F+ + T + Sbjct: 301 GKA--RAAVIIPDNVLFEGGVG---KDIRMDLLNKCNLHTVLRLPTGIFYAQGVKTNVLF 355 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 +T+ K DL T++ N G K + + + + S E + + Sbjct: 356 FERGRTDVNNTK--ETWYYDLRTNMPNFG-KNTPLTSSHFEEFEETFDSVEEKEKLERWN 412 Query: 470 YRTFGYRRIKVLRPLRMSFILD 491 I + ++ + LD Sbjct: 413 -------LITLEEVIKKDYSLD 427 >gi|291526086|emb|CBK91673.1| Type I restriction-modification system methyltransferase subunit [Eubacterium rectale DSM 17629] Length = 486 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 82/508 (16%), Positives = 179/508 (35%), Gaps = 78/508 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +++L+ E T+ +D ES +Y S + + Sbjct: 35 LLFIKQLDEV-ETTKE------NEANFLGVDYESMFPGECQ------KYRWSKFKNLGSA 81 Query: 98 NNLESY-IASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + + K + +D D I ++ A +L KI +EL Sbjct: 82 EEMYELVLNGVFPFIKNLHQDGDSAYARYMGDAIFKIPTAAMLSKIVDGIDKLELG---- 137 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + ++YE+L+ + + F TPR ++ + L+ P T+ Sbjct: 138 DEDSKGDLYEYLLSKVATAG--TNGQFRTPRHIIKMMVELV----------KPSPDDTII 185 Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263 DP G+ GFL +A +++ + + + +G +++ + ML+ Sbjct: 186 DPAMGSAGFLIEAQSYLRENHPELFLHKESLEHFNNTMFYGNDMDRTMLRIGAMNMLLHG 245 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 +E + NI +LS+ +++ L+NPPF + + + + Sbjct: 246 VE-------NPNISYRDSLSEQNTDVEKYSLVLANPPFKGSLDYEAVSADL--------- 289 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + K +LFL L+ GGRAA+++ LF + +IR+ ++E Sbjct: 290 --LKVTKTKKTELLFLALFLRILKK----GGRAAVIVPDGVLF--GSSKAHKQIRKEIIE 341 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 N+ ++A++++P+ +F ++T + I + + + KV + + + KR+ Sbjct: 342 NNKLDAVISMPSGVFKPYAGVSTAILIFTKTGSSD-TDKVWFYD---MKADGLSLDDKRQ 397 Query: 443 IINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 I D+ I++ + R+ S + + + + Sbjct: 398 EIADNDIPDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNNYDLSINKYKEIVYEAVQYE 457 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQ 524 + I L LK ++ Sbjct: 458 PTDVIIGKIDALESEIQGELAELKKLLD 485 >gi|237739318|ref|ZP_04569799.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. 2_1_31] gi|229422926|gb|EEO37973.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. 2_1_31] Length = 474 Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats. Identities = 92/498 (18%), Positives = 170/498 (34%), Gaps = 90/498 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 + + +W L D + ++ IL L+ L + + Sbjct: 2 TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKML--------AEQDNEAEVG 50 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + +K+ G T + +L L + + + Sbjct: 51 IPEEYRWNTLIKLDGLELKTTYQKALIDLAQKENNLAII------------------YRN 92 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +E+ L KI ++ + +V ++YE L+ + SE GA + TPR Sbjct: 93 AKTNIEEPANLKKIFSEIDKMDWY--SVDKEDFGDLYEGLLEKNASEKKSGAGQYFTPRV 150 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK------- 235 ++ + P + + DP GT GF+ A ++ + + Sbjct: 151 LIDTIVKV----------TKPQLKERICDPASGTLGFIISANRYIKEKNDDYYGISEEDY 200 Query: 236 -IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 EL P+TH + + L+ +E + QG TLS K F Sbjct: 201 AFQKKEAFSACELVPDTHRLGIMNALLHGVEGNFL--------QGDTLSATGTQLKNFDL 252 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 LSNPPFG K ++ + + S+ + FL + L L Sbjct: 253 ILSNPPFGTKKGGERATRDD------------LVFSSSNKQLNFLEIIYRSLNLTGRA-- 298 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RA +VL + LF G G +IR+ LL + I+ LPT +F+ + T + K Sbjct: 299 RAGVVLPDNVLFEGGIG---KDIRQDLLNKCNVHTILRLPTGIFYAQGVKTNVLFFDRAK 355 Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 T+ K + + L T++ N G K + + + + + + E + Sbjct: 356 TDIGNTKDIWFYD---LRTNMPNFG-KTTPLTEKYFEEFISTFDNDEEKEKLERW----- 406 Query: 474 GYRRIKVLRPLRMSFILD 491 +I + ++ + LD Sbjct: 407 --TKISIDEVIKKDYSLD 422 >gi|75674467|ref|YP_316888.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255] gi|74419337|gb|ABA03536.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255] Length = 519 Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats. Identities = 97/505 (19%), Positives = 172/505 (34%), Gaps = 90/505 (17%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRSA- 54 ++ L + + + + GD LP L+ L+ LE R Sbjct: 16 TTSQMLGSLLKSARDIMRKDKGLNGDLDR-------LPLLTWIMFLKFLDD-LEQQREEE 67 Query: 55 ----------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 E + D + SF N E + L +Y+ Sbjct: 68 TALSGKKFKAAIEAPYRWRDWAADPQGITGDELLSFINAEEAVRADGKK---GPGLFAYL 124 Query: 105 ASFS----DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + S DN + + F R++ LL I GI + + +YE Sbjct: 125 RALSSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIINKVGGIHFT-SSDELHTLGALYE 182 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 ++R + +F TPR VV + P + T+ DP GTGGFL Sbjct: 183 SMLREMRDAAG-DSGEFYTPRAVVRFMVEV----------TDPRLGETVLDPASGTGGFL 231 Query: 221 TDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 + NH+ K G E + + +C +L+ L+ + I Sbjct: 232 VETYNHLEKQVKTVADRKRLQDETITGCEPKSLPYLLCQMNLLLHGLD-------APQID 284 Query: 278 QGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 G+ L ++ +R L+NPPFG + EK E + ++ Sbjct: 285 PGNALRFKLSEIGEKERVDVILTNPPFGGEEEKGIQGNFPEDRQ------------TAET 332 Query: 335 SMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 ++LFL + KL+ P G RAA+V+ + LF + I+ LL++ + IV Sbjct: 333 ALLFLQLIMRKLKRQPTSVGRPARAAVVVPNGTLFGDGVC---ARIKEELLKDFNLHTIV 389 Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQ 448 LP +F T+I T + + + L + +T K + + ++ Sbjct: 390 RLPNGVFAPYTSIPTNILFFDRSCQTKEVWYYEQPLPDGRKNYT-------KTQPMQFEE 442 Query: 449 RRQILDIYVSRENGKFSRMLDYRTF 473 + + + RE + + + Sbjct: 443 FKGCMAWWTKREENDQAWRVSAKEL 467 >gi|332289273|ref|YP_004420125.1| N-6 DNA Methylase [Gallibacterium anatis UMN179] gi|330432169|gb|AEC17228.1| N-6 DNA Methylase [Gallibacterium anatis UMN179] Length = 539 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 91/484 (18%), Positives = 169/484 (34%), Gaps = 79/484 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64 + + +W + L ++ + +L ++ E + V E ++ Sbjct: 2 TNNEIVQKLWNLCDVLRD--DGINYNDYLTELVMLLFIKMTYEKEQIFVEEGIEFTTLLP 59 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 + F +G N + L L + + S + + +++ Sbjct: 60 EGCRWDDFNDKSGSELLNHYKRILLLLSTGKDGDK--------SVHHNPLLLAI-YANAS 110 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 L++ L +I K F ++ ++ + ++YE L+ + +E GA + TPR ++ Sbjct: 111 TSLKEPKHLEQIIKAFDAMDWF--SMQKDGLGDLYEGLLEKNATETKSGAGQYFTPRALI 168 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHKIP 237 ++ + P + + DP GT GFL A +V D G + Sbjct: 169 NVMVRCI----------QPKVGEIVQDPAAGTAGFLIAADQYVRHQSDDYLDLGDEERKF 218 Query: 238 PILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 V G EL T + + L+ +E + QG+TL + L Sbjct: 219 QNEVAFQGVELVENTRRLALMNCLLHGIEGGEEGA----VIQGNTLGSAGKDLPNANVIL 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG + + + S+ + FL H+ L GGRA Sbjct: 275 ANPPFGSSKGGEAAITRDDL-----------TFETSNKQLAFLQHIYRNL----QEGGRA 319 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---- 412 A+VL + LF G +EIR+ L+ + I+ LPT +F+ + T + + Sbjct: 320 AVVLPDNVLFEANKG---TEIRQDLMSKCNVHTILRLPTGIFYAQGVKTNVLFFNKATQS 376 Query: 413 --------------RKTEER-----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 K E Q I DL T++ N G KR + + Sbjct: 377 QTISVKAGVKEKESEKDAEEVLQKSNDPTQKIWVYDLRTNMPNFG-KRTPFTEHYLKAFE 435 Query: 454 DIYV 457 ++ Sbjct: 436 AVFN 439 >gi|283954322|ref|ZP_06371843.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794121|gb|EFC32869.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 414] Length = 227 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 26/223 (11%) Query: 80 FYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 F+N S+++L TL N R N E+Y+ FS+N K I F F + + LE++ +L+ + Sbjct: 12 FFNYSQFNLQTLLNNPKNIRINFENYLDCFSENIKDIISKFKFKNQLDTLEESNILFGVI 71 Query: 138 KNFSGI--------------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + F L + + M ++E LIR+F E +E A + TPR++ Sbjct: 72 ERFCSPKVNFGIEDILDEKGNLIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREI 131 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + L T L+ P K+ +YD CG+GG LT++ + D K + + Sbjct: 132 IELMTHLVFLPVKEQIKKG---TWLIYDNACGSGGMLTESKEFITDPNGLIKSKANIHLY 188 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 GQE+ PET+A+C A MLI+ + D +I+ GSTLS D Sbjct: 189 GQEINPETYAICKADMLIKGEDPD-------HIKFGSTLSNDQ 224 >gi|291527177|emb|CBK92763.1| Type I restriction-modification system methyltransferase subunit [Eubacterium rectale M104/1] Length = 486 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 82/508 (16%), Positives = 179/508 (35%), Gaps = 78/508 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +++L+ E T+ +D ES +Y S + + Sbjct: 35 LLFIKQLDEV-ETTKE------NEANFLGVDYESMFPGECQ------KYRWSKFKNLGSA 81 Query: 98 NNLESY-IASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + + K + +D D I ++ A +L KI +EL Sbjct: 82 EEMYELVLNGVFPFIKNLHQDGDSAYARYMGDAIFKIPTAAMLSKIVDGIDKLELG---- 137 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + ++YE+L+ + + F TPR ++ + L+ P T+ Sbjct: 138 DEDSKGDLYEYLLSKVATAG--TNGQFRTPRHIIKMMVELV----------KPAPDDTII 185 Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263 DP G+ GFL +A +++ + + + +G +++ + ML+ Sbjct: 186 DPAMGSAGFLIEAQSYLRENHPELFLHQESLQHFNNTMFYGNDMDRTMLRIGAMNMLLHG 245 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 +E + NI +LS+ +++ L+NPPF + + + + Sbjct: 246 VE-------NPNISYRDSLSEQNTDVEKYSLVLANPPFKGSLDYEAVSADL--------- 289 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + K +LFL L+ GGRAA+++ LF + +IR+ ++E Sbjct: 290 --LKVTKTKKTELLFLALFLRILKK----GGRAAVIVPDGVLF--GSSKAHKQIRKEIIE 341 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 N+ ++A++++P+ +F ++T + I + + + KV + + + KR+ Sbjct: 342 NNKLDAVISMPSGVFKPYAGVSTAILIFTKTGSSD-TDKVWFYD---MKADGLSLDDKRQ 397 Query: 443 IINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 I D+ I++ + R+ S + + + + Sbjct: 398 EIADNDIPDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNNYDLSINKYKEIVYEAVQYE 457 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQ 524 + I L LK ++ Sbjct: 458 PTDVIIGKIDALESEIQGELAELKKLLD 485 >gi|167461218|ref|ZP_02326307.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381544|ref|ZP_08055522.1| type I restriction-modification system methyltransferase subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154502|gb|EFX46800.1| type I restriction-modification system methyltransferase subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 485 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 85/496 (17%), Positives = 175/496 (35%), Gaps = 82/496 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ TR +L + + F N + L Sbjct: 35 LLFIKGLDDI--ETRKENEAAFLGLTYEGMFPNDKQDLRWSRFKNMEANQMYNLVLNGIF 92 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 +++ ED F ++ +L KI GI++ + Sbjct: 93 PFIKNLHQDGDSAYSKYMEDAIF-----KIPTPQMLTKIVDGIDGIDME----KRDAKGD 143 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + L+ P + DP G+ Sbjct: 144 LYEYLLSKVATAG--MNGQFRTPRHIIEMMVRLM----------KPSPSDVIADPAMGSA 191 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL A +V + + K + +G +++ + ML+ ++ Sbjct: 192 GFLVAAQEYVKEHHADLFLHAGLKKHFNQDMFYGFDMDRTMLRIGAMNMLLHGVD----- 246 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 NI+ +LS+ +++ L+NPPF K D DAV K+ + K Sbjct: 247 --QPNIEYKDSLSEQNGDQEKYTMILANPPF--KGSLDYDAVSKDLLK---------ITK 293 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL + L+ GGR+A ++ S LF + EIR+ L++N +EA+ Sbjct: 294 TKKTELLFLALILRSLK----LGGRSATIVPDSVLF--GSSKAHKEIRKELVDNHKLEAV 347 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + +V + + KR+ I + Sbjct: 348 ISMPSGVFKPYAGVSTAVLIFTKT-GAGGTDQVWFYDMKADGY---SLDDKRQQIEQNDI 403 Query: 450 RQILDIYVS------RENGKFSRMLD---------------YRTFGYRRIKVLRPLR--M 486 I++ + + R+ + S ++D Y+ Y+ + P + Sbjct: 404 PDIVERFENLQGEKTRKRTEQSFLVDVQEIRDNGYDLSINKYKEIEYKEVTYDHPREILL 463 Query: 487 SFILDKTGLARLEADI 502 + + ++ Sbjct: 464 RIQQLEEEIQAGLEEL 479 >gi|91792593|ref|YP_562244.1| N-6 DNA methylase [Shewanella denitrificans OS217] gi|91714595|gb|ABE54521.1| N-6 DNA methylase [Shewanella denitrificans OS217] Length = 501 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 96/538 (17%), Positives = 188/538 (34%), Gaps = 71/538 (13%) Query: 10 SLANFIWKNAEDLWGD--FKHTDFGKVILP----FTLLRRLECALEPTRSAVREKYLAFG 63 S+++ I + + D L L+ + + E L Sbjct: 2 SISSAIKSIQDIMRKDAGVDGDAQR---LGQMSWLLFLKVFDA-----QEQELELELDNY 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 I E + + L + L++ A N + FS Sbjct: 54 REPIPEEFLWRHWAADNQGITGDELLEFVNDELFPKLKNLTAPIDKNPRGYVVKEAFSDA 113 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ LL ++ + I+ D+ + ++YE +++ S + A +F TPR + Sbjct: 114 FNYMKNGTLLRQVINKLNEIDFT-DSNERHLFGDLYEQILKDLQSAGN--AGEFYTPRAI 170 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240 A+ P + ++ DP CGTGGFL A +HV + Sbjct: 171 TKFIVAV----------TDPKLGESIMDPACGTGGFLACAFDHVKANYVKTADDHQTLQQ 220 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNP 299 G E + H +C M++ +E I+ G+TL+K ++ ++NP Sbjct: 221 QIFGVEKKQLPHLLCTTNMMLHGIEV------PVQIRHGNTLNKPLSSWDEQVDVIITNP 274 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------- 352 PFG ++D +EK + R + +D LFL + L P G Sbjct: 275 PFGG---TEEDGIEKNFPSEFQTR------ETAD---LFLQLIIEVLAEPSAGNEPSALK 322 Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWI 409 GGRAA+VL LF ++I++ L++ + IV LP +F + T I T + Sbjct: 323 SGGRAAVVLPDGTLFGEGVK---TKIKKMLMDECNLHTIVRLPNGVFNPY-TGIKTNILF 378 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + + + + + K + + ++ L + +G SR+ + Sbjct: 379 FTKGTPTK---DIWFYE--HPYPAGVKNYNKTKPMKFEEFETELSWWGDEADGFASRVEN 433 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + ++ + + ++ LD E + + ++ + Q+ Sbjct: 434 EQA---WKVSIEDIINRNYNLDIKNPHVGEVISHDPQTLLSDYAKQQADIQALRDQLK 488 >gi|167854766|ref|ZP_02477544.1| glucose-inhibited division protein B [Haemophilus parasuis 29755] gi|167854064|gb|EDS25300.1| glucose-inhibited division protein B [Haemophilus parasuis 29755] Length = 515 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 85/463 (18%), Positives = 164/463 (35%), Gaps = 61/463 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63 + + +W + L ++ + L ++ + E+ F Sbjct: 2 TNNEIVQKLWNLCDVLRD--DGINYNDYLTELVMLLFIKMVH----EKEQLFIEEKTEFK 55 Query: 64 GSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + + ++G S N Y L + + N I + AI+ + Sbjct: 56 PLLPEGCRWEDLSGKSGINLLDNYRRMLLVLSTGKEN--DEIVHNNPLLLAIYANAK--- 110 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 L + L ++ +NF ++ + ++YE L+ + +E GA + TPR Sbjct: 111 --TSLTQPKHLEQLVRNFDEMDWFSAQKD--GLGDLYEGLLEKNATETKSGAGQYFTPRA 166 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHK 235 +++ + +P + + DP GT GFL A ++ D + Sbjct: 167 LINSMVRCI----------NPVVGEVIQDPAAGTAGFLIAADQYMRNKTDDYFDLSEQDR 216 Query: 236 IPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 I G EL T + + L+ +E + QG++L K Sbjct: 217 HFQIHEAFKGVELVTNTRRLALMNCLLHGIEGGSEGA----VIQGNSLGDVGKNLKPADI 272 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPFG D + + ++ + FL H+ L+ GG Sbjct: 273 ILANPPFGTSKGGDAVITRDDL-----------TFETTNKQLAFLQHIYRNLKE----GG 317 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RAA+VL + LF G ++IR+ L++ + I+ LPT +F+ + T + Sbjct: 318 RAAVVLPDNVLFEAGKG---TDIRKDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFDKV- 373 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + + Q DL T++ + G KR + ++ Sbjct: 374 SNDAENSTQKTWVYDLRTNMPSFG-KRTPFTEKYLEAFEKVFN 415 >gi|168262424|ref|ZP_02684397.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348666|gb|EDZ35297.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 489 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 91/495 (18%), Positives = 178/495 (35%), Gaps = 58/495 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E + + + L + + Sbjct: 33 LLFLKIFDA-----QEQALEIEQEKYRLPMPERYLWRNWAADNEGITGDKLLAFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PTLKDLPAQIDINPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-RASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R + + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILRDLQAAGN--AGEFYTPRAVTRFMVERV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + +H HG E + H +C ML+ +E Sbjct: 195 GFLACAFDHVKNHYAHTVTDHQLLQRQIHGVEKKQLPHLLCTTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK + R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQMDVIITNPPFGG---TEEDGIEKNFPSDMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + + + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---DIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD ++E Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQVETVSHDPDELLAQ 460 Query: 512 QSFWLDILKPMMQQI 526 + + ++ + Q+ Sbjct: 461 YAKQQEAIQTLRHQL 475 >gi|238924766|ref|YP_002938282.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Eubacterium rectale ATCC 33656] gi|238876441|gb|ACR76148.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Eubacterium rectale ATCC 33656] Length = 486 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 82/508 (16%), Positives = 178/508 (35%), Gaps = 78/508 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +++L+ E T+ +D ES +Y S + + Sbjct: 35 LLFIKQLDEV-ETTKE------NEANFLGVDYESMFPGECQ------KYRWSKFKNLGSA 81 Query: 98 NNLESY-IASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + + K + +D D I ++ A +L KI +EL Sbjct: 82 EEMYELVLNGVFPFIKNLHQDGDSAYARYMGDAIFKIPTAAMLSKIVDGIDKLELG---- 137 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + ++YE+L+ + + F TPR ++ + L+ P T+ Sbjct: 138 DEDSKGDLYEYLLSKVATAG--TNGQFRTPRHIIKMMVELV----------KPAPDDTII 185 Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263 DP G+ GFL +A +++ + + + +G +++ + ML+ Sbjct: 186 DPAMGSAGFLIEAQSYLRENHPELFLHQESLEHFNNTMFYGNDMDRTMLRIGAMNMLLHG 245 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 +E + NI +LS+ +++ L+NPPF + + + + Sbjct: 246 VE-------NPNISYRDSLSEQNTDVEKYSLVLANPPFKGSLDYEAVSADL--------- 289 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + K +LFL L+ GGRAA+++ LF + +IR+ ++E Sbjct: 290 --LKVTKTKKTELLFLALFLRILKK----GGRAAVIVPDGVLF--GSSKAHKQIRKEIIE 341 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 N+ ++A++++P+ +F ++T + I + + KV + + + KR+ Sbjct: 342 NNKLDAVISMPSGVFKPYAGVSTAILIFTKTGSG-GTDKVWFYD---MKADGLSLDDKRQ 397 Query: 443 IINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 I D+ I++ + R+ S + + + + Sbjct: 398 EIADNDIPDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNDYDLSINKYKEIVYEAVQYE 457 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQ 524 + I L LK ++ Sbjct: 458 PTDVIIGKIDALESEIQGELAELKKLLD 485 >gi|116754514|ref|YP_843632.1| type I restriction-modification system specificity subunit [Methanosaeta thermophila PT] gi|116665965|gb|ABK14992.1| type I restriction-modification system specificity subunit [Methanosaeta thermophila PT] Length = 196 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 G + NFIW A+D L + + VILP T++RRL+ LEPT+ AV + + Sbjct: 2 ENGQITWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLDMKASL 61 Query: 63 GGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116 + I + + AG +FYNTS ++L L + +R + +Y+ FS N + I + Sbjct: 62 DKAGIVHQDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIID 121 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYEHL 162 +F+F + I RL KA L + + F ++ + M I+E L Sbjct: 122 NFEFRNQIPRLAKADALGTLIEKFLDPSINLSPYPVLNSDGSVRLPGLDNHAMGTIFEEL 181 Query: 163 IRRFGSEVSEGAEDF 177 +RRF E ++ + Sbjct: 182 VRRFNEENNKEVGEH 196 >gi|182626301|ref|ZP_02954057.1| type I restriction enzyme M subunit [Clostridium perfringens D str. JGS1721] gi|177908399|gb|EDT70941.1| type I restriction enzyme M subunit [Clostridium perfringens D str. JGS1721] Length = 487 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 81/489 (16%), Positives = 180/489 (36%), Gaps = 73/489 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ E T+ A G + D + S + + Sbjct: 35 LLFIKGLDDV-ETTKEA----EATLLGVDFDRTFPEDKQDLRWSKFSNEGDAKKMYDIVQ 89 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 N + +I + N ++ + + I ++ +L KI +GIE + + Sbjct: 90 NKVFPFIKNLHGNKESAYAKY-MEDAIFKIPTPLMLSKIVDGINGIEF---KKENDTKGD 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + L+ P + DP G+ Sbjct: 146 LYEYLLSKLS--SAGTNGQFRTPRHIIDMIVKLM----------KPTPEDIIVDPAAGSA 193 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL + ++ D + + + +G +++ + M++ ++ Sbjct: 194 GFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVD----- 248 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NI+ +LS+ ++F L+NPPF + + + + + K Sbjct: 249 --NPNIEYKDSLSEVNTDKEKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGR A ++ LF + G +IR+ ++EN +EAI Sbjct: 296 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRKEIVENHKLEAI 349 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + + KV + + + KR + ++ Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKTGSG-GTDKVWFYD---MKADGFSLDDKRNPVEENDI 405 Query: 450 RQILDIYVSRENGKFSRMLDYRTF----------------GYRRIKVLRPLRMSFILDKT 493 I++ + + EN + + + F Y+ I+ + + + Sbjct: 406 NDIIERFSNLENEEDRKRTEQSFFVPVKEIRDNGYDLSINKYKEIEYEEVVYDAPSVILE 465 Query: 494 GLARLEADI 502 + LE +I Sbjct: 466 RIKELENEI 474 >gi|323136162|ref|ZP_08071244.1| Site-specific DNA-methyltransferase (adenine-specific) [Methylocystis sp. ATCC 49242] gi|322398236|gb|EFY00756.1| Site-specific DNA-methyltransferase (adenine-specific) [Methylocystis sp. ATCC 49242] Length = 487 Score = 188 bits (477), Expect = 4e-45, Method: Composition-based stats. Identities = 94/527 (17%), Positives = 180/527 (34%), Gaps = 78/527 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 ++ L N +W+ L + + + T L L+ E R + A G I Sbjct: 4 SSDLVNKLWRLCAVLRK--DGVTYQQYVTELTYLLFLKMMAEQKREEGKIPQGARWGDLI 61 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127 E ++A Y +L +AI F++ + Sbjct: 62 AEEGVRRLALYR---------------KILADLGDPQQKRDRAVQAI-----FANAATFI 101 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + L K+ + + ++YE L+++ E GA + TPR ++ L Sbjct: 102 REPVNLDKLIGAIDDLHWFTEERDS--FGDLYEGLLQKNAEETKRGAGQYFTPRVLIELL 159 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPI 239 LL +P + DP GTGGFL A ++ + Sbjct: 160 VRLL----------APQPGEIIQDPAAGTGGFLIAANRYMRAKTDDFFDLAPKAQEFQLK 209 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 G E + + + + + ++S +I+ G TLS + L+NP Sbjct: 210 HALQGMENVEGVYRLLLMNLFLHGVDSW-------HIELGDTLSPAGAAMNKADVILTNP 262 Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PFG + +D + +S + F+ H L+ GGRAA+ Sbjct: 263 PFGPAGGKPSRDDITV-------------TATVSSYQLPFVEHCIRTLKP----GGRAAV 305 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE- 417 V+ + LF G E+RR L++ + I+ LPT +F+ + T + S + + Sbjct: 306 VVPDNVLFEDGRG---RELRRMLMDYCNLHTILRLPTGIFYAQGVKTNVIFFSKGEADSG 362 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 + KV + + ++ G K + + + + NG+ R + +RR Sbjct: 363 QTKKVWIYDLR---ANMPAFG-KTSPLTPEHFADFERAFGADPNGRAKRNDEGEEGRFRR 418 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ D ++ L + S + + ++ Sbjct: 419 FTREE---IAARGDNLDISWLRDTSADAEDSLSEPEELIAAILGHLK 462 >gi|54308990|ref|YP_130010.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium profundum SS9] gi|46913420|emb|CAG20208.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium profundum SS9] Length = 500 Score = 188 bits (477), Expect = 4e-45, Method: Composition-based stats. Identities = 97/462 (20%), Positives = 177/462 (38%), Gaps = 56/462 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L + I + + + L + Sbjct: 33 LLFLKVFDA-----QEEELEFELDDYRAPIPEQYLWRNWAADKQGMTGDELLEFVNDRLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 +L++ A N + FS ++ LL ++ + I+ DT + + Sbjct: 88 YDLKNLTAPIDKNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DTDERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR + + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAITKFIVKV----------TDPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV + HG E + H +C ML+ +E Sbjct: 195 GFLACSFDHVQNNYVKSAGDHKTLQSQIHGVEKKQLPHLLCTTNMLLHGIEI------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIKHGNTLAKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 LFL + L P NG GGRAA+VL LF ++I++ L E + IV Sbjct: 300 ---LFLQLIIEILASPVNGQKGGRAAVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIV 353 Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 LP +F + T I T + + K + V + + K + + ++ Sbjct: 354 RLPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPAGVKNYSKTKPMKFEEF 407 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 + L+ + + E+G SR+ + + ++ + + +F LD Sbjct: 408 QTELEWWGNEEDGFASRIKNNQA---WKVSIDEIIERNFNLD 446 >gi|302037934|ref|YP_003798256.1| type I restriction-modification system, methyltransferase subunit [Candidatus Nitrospira defluvii] gi|300605998|emb|CBK42331.1| Type I restriction-modification system, methyltransferase subunit [Candidatus Nitrospira defluvii] Length = 484 Score = 187 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 159/462 (34%), Gaps = 85/462 (18%) Query: 38 FTLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYS--------------- 79 L+ L+ + + ++Y ES+ G Sbjct: 32 LLFLKYLDALEQDKADEAKLEGKRYSFILEKPYRWESWAAPKGKDGKLDHDVALTGNDLT 91 Query: 80 -FYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 F N + L + + N Y IF + +++ L +I Sbjct: 92 EFVNLKLFPYLYSFKQKASGPNTIEY------KIGEIFGEIK-----NKIQSGYNLREII 140 Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + + +S++YE I+ G ++ TPR ++ ++ Sbjct: 141 DHIDELRFR-SQKEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMVQVV------ 192 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHA 253 P + +YD CG+ GFL +A +++ G K +G+E + + Sbjct: 193 ----KPKLGERIYDGACGSAGFLCEAYDYLTAKGDLSTKDLKTLQEKTFYGKEKKSLAYV 248 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + M++ +E + NI +TL++ D+ R+ L+NPPFG K K+ Sbjct: 249 IAIMNMILHGIE-------APNIIHTNTLTENLADIQEKDRYDVVLANPPFGGKERKEVQ 301 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + + LFL H L+ GGR +V+ ++ L N Sbjct: 302 QNFPI--------------RTGETAFLFLQHFIKSLK----AGGRGGVVIKNTFLSNTDN 343 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 S +R+ LLE+ + ++ P F + T + + QL Sbjct: 344 AS--VSLRKLLLESCNLHTVLDCPGGTFQGAGVKTVVLFFEKGAPTCKVWYYQL------ 395 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 R+ G K +NDD ++ + + S + S ++ + Sbjct: 396 -DPGRSLG-KTNPLNDDDLKEFVKLQKSFADSPKSWSINAKD 435 >gi|169634836|ref|YP_001708572.1| DNA methylase M, host modification [Acinetobacter baumannii SDF] gi|169153628|emb|CAP02820.1| DNA methylase M, host modification [Acinetobacter baumannii] Length = 509 Score = 187 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 155/453 (34%), Gaps = 81/453 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 ++ IW L GD T + + L + Sbjct: 2 KQDTVIQKIWSLCNILRGD-----------GITYYQYVSE---------LSYLLFLKIAQ 41 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-AIFEDFD-FSSTI 124 + + GY + L + + N + + D F +T+ Sbjct: 42 ENGSEILIPEGYRW-----ADLEAHEEEGLLGFYQEMLTHLGANVENEVIRDIYAFPTTV 96 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 + L + S IE H V ++Y LI + + GA + TPR ++ Sbjct: 97 --FSHSENLKAVIDGISEIEWH--QVGKDGFGDLYSGLIDKSAQDTRSGAGQYFTPRSLI 152 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH- 243 + L+ P + + DP G+GGFL A +++ S + + Sbjct: 153 NSIIRLI----------QPNLGDLIQDPATGSGGFLVSADSYIRTKSSQEEYQASPPKYQ 202 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 G E+E T +C+ + L+ NI G L+ D+ L+NPPFG Sbjct: 203 GVEIEKNTRRICLMNTFLHHLD--------ANIVYGDALTDDVLKLDDPDIILANPPFGN 254 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + LP ++ + FL H+ L+ GGRAA+VL Sbjct: 255 KAGSQRPLRSD-------------LPFPNTNKQLAFLQHIYLSLK----AGGRAAVVLPD 297 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS------NRKTE 416 + LF G +++R+ L+ + I+ LPT +F+ + T + + + E Sbjct: 298 NVLFESGIG---TDVRKDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSTKDKHQQE 354 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 V + + T++ + G KR + Sbjct: 355 NCTENVWIYDLR---TNMPSFG-KRTPFGNADI 383 >gi|163748971|ref|ZP_02156222.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella benthica KT99] gi|161331347|gb|EDQ02235.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella benthica KT99] Length = 495 Score = 187 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 98/537 (18%), Positives = 185/537 (34%), Gaps = 64/537 (11%) Query: 10 SLANFIWKNAEDLWGD--FKHTDFGKVILP----FTLLRRLECALEPTRSAVREKYLAFG 63 S+++ I + + D L L+ + + E + Sbjct: 2 SISSVIKSIQDIMRKDAGIDGDAQR---LGQMSWLLFLKIFDA-----QEEELEFEQSDY 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 S + + + + L + L++ A N + S Sbjct: 54 QSPLPEQFLWRNWAADNQGITGEELLYFVNNKLFVELKNLYAPLDINPRGFVVKEALSDA 113 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ LL ++ + I+ + ++YE +++ S + A +F TPR + Sbjct: 114 FNYMKNGTLLRQVINKLNDIDFTNSE-ERHLFGDLYEQILKDLQSAGN--AGEFYTPRAI 170 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----I 239 + P + ++ DP CGTGGFL + +HV + + Sbjct: 171 TRFIVDRI----------DPKLGESILDPACGTGGFLACSFDHVKNNYIKNNTTDLPILQ 220 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSN 298 HG E + H +C ML+ +E I+ G+TLSK + ++N Sbjct: 221 RQIHGVEKKQLPHLLCTTNMLLHGIEV------PTQIKHGNTLSKPLSSWDDEYDIIVTN 274 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGGRA 356 PPFG ++D +EK R + + LFL + L+ P GGRA Sbjct: 275 PPFGG---TEEDGIEKNFPTEYRTR---------ETADLFLQLIIEVLKEPSAGKEGGRA 322 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT 415 A+VL LF ++I++ L E + IV LP +F T+I T + + K Sbjct: 323 AVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRLPNGVFAPYTSIKTNILFFTKGKP 379 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 KV + + K + + + + +D + + +G SR + Sbjct: 380 ---TTKVWFYE--HPYPAGVKSYNKTKPMKFAEFQTEIDWWGTEADGFASRKTTEQA--- 431 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 ++ + + +F LD E + S ++ + Q+ A Sbjct: 432 WQVSIDDIIARNFNLDIKNPHVGEVISHDPQELLADYSKQQADIQALRDQLKDILSA 488 >gi|315222635|ref|ZP_07864524.1| N-6 DNA Methylase [Streptococcus anginosus F0211] gi|315188321|gb|EFU22047.1| N-6 DNA Methylase [Streptococcus anginosus F0211] Length = 325 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 122/264 (46%), Gaps = 32/264 (12%) Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GTGG L +A+ H+ D K +GQE T A+ + + Sbjct: 32 GTGGMLIEAIRHIGD-----KQMTYGRIYGQENNLSTSAIARMNLFLHG-------ASDF 79 Query: 275 NIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + QG TL F ++F+ L+NPPFG+ + ++ + GR G P Sbjct: 80 KVAQGDTLRTPKFIEHGQLQKFNCVLANPPFGQ-----EKWGADSFESDKYGRNMWGCPS 134 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S+ +L H+ ++ G+ A+VL LF+ E +IR L+++DLIEA+ Sbjct: 135 DSNADFAWLQHMIKSMKPMD---GKVAVVLPQGVLFHNGK---EGDIREQLIKSDLIEAV 188 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 VAL +F+ T ++ + L+N K E +GKV LI+AT+++T R + ++ ++ Sbjct: 189 VALAGGVFYGTGVSACILFLNNHKRPEHKGKVCLIDATNIYTPKRA----QNLMEENDIN 244 Query: 451 QILDIYVSRENG-KFSRMLDYRTF 473 ++ +Y ++ + +++ Sbjct: 245 EVFKLYQEYKDVIEKCKIVSIADL 268 >gi|1841495|emb|CAA71895.1| StySKI methylase [Salmonella enterica] Length = 493 Score = 187 bits (474), Expect = 7e-45, Method: Composition-based stats. Identities = 94/508 (18%), Positives = 182/508 (35%), Gaps = 58/508 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNNYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD ++E Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQVETVSHDPDELLAQ 464 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKES 539 + + ++ + Q+ A KE+ Sbjct: 465 YAKQQEAIQTLRHQLRDILGAALSGKEA 492 >gi|294850060|ref|ZP_06790798.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus A9754] gi|294823194|gb|EFG39625.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus A9754] Length = 311 Score = 187 bits (474), Expect = 8e-45, Method: Composition-based stats. Identities = 73/327 (22%), Positives = 117/327 (35%), Gaps = 48/327 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKD 308 L F G F ++NPP+ KW D Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTAD 311 >gi|316932986|ref|YP_004107968.1| adenine-specific DNA-methyltransferase [Rhodopseudomonas palustris DX-1] gi|315600700|gb|ADU43235.1| Site-specific DNA-methyltransferase (adenine-specific) [Rhodopseudomonas palustris DX-1] Length = 484 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 97/470 (20%), Positives = 159/470 (33%), Gaps = 64/470 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + SL +W A L + I L+ E E+ G + Sbjct: 2 NPQSLVAKVWNFAHVLRDQGVSYQAYISQISYLLFLKMDE-----------ERVAQIGEA 50 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 ++ + + L + S I F Sbjct: 51 SMLPDGARWA-----------DIKELSGEALGATYGKLLEKLSKQP-GIIGAI-FLKAQN 97 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 ++ L ++ G +P V +IYE L+ R +V GA + TPR V+ Sbjct: 98 EIQDPAKLKRLVGLIDGETWL--ALPVDVKGSIYEGLLARNAEDVKSGAGQYFTPRPVIE 155 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----ILV 241 L+ P +T++DP CGT GFL A H+ Sbjct: 156 AMVTLV----------DPKPHQTVHDPACGTAGFLLAAWEHMKKHPKARDRRVYSELKNK 205 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 G ++ PE + + + + +K+ G GK F L+NPPF Sbjct: 206 FSGVDIVPEVVRLAAMNLYLHGITGVDSIVEAKDALLG-------AGGKSFDVVLTNPPF 258 Query: 302 GKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 GKK +D ++ E ++ + F S+ + FL H+ L G AA Sbjct: 259 GKKQSYRIVRDDGEIDSEREDYDRQDFFVTT---SNKQLNFLQHIMTVLAP----NGEAA 311 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL + LF G A GE+ IRR LL+N ++ LPT +F++ + + K Sbjct: 312 VVLPDNVLFEGGA--GET-IRRRLLQNFDFHTLLRLPTGIFYKQGVKANVLFFDK-KPPS 367 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + + DL T+ R K R + + Y S + + Sbjct: 368 ETASTKELWIYDLRTNQR-FTLKERPMVRADLDDFVACYRSGHRAERAET 416 >gi|242278889|ref|YP_002991018.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638] gi|242121783|gb|ACS79479.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638] Length = 489 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 91/459 (19%), Positives = 169/459 (36%), Gaps = 72/459 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTL 91 L+ L+ LE R+ E ID E + K A SF + S + L Sbjct: 32 MLFLKYLDD-LEAARAEDEELRGNDYEFIIDAEHRWSSWAAPKNADGSFDHDSALTGDDL 90 Query: 92 GSTNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELH 146 T L Y+ F + +A I F + + L + ++ Sbjct: 91 I-TYVDEELFPYLKGFKQRASSADTIEYKIGEIFGEIKNKFQSGYSLRDALELMDKLQFK 149 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 +S++YE I+ G ++ TPR ++ + SP + Sbjct: 150 -SQKEKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIKV----------ASPTIG 197 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---------PILVPHGQELEPETHAVCVA 257 T+YD CG+ GFL ++ +H+ + +G+E + + + + Sbjct: 198 ETIYDGACGSAGFLCESYDHLRYGSDGKEAKLSVDQLRSLQTSTFYGKEKKSLAYVIAIM 257 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 M++ ++ + NI +TL+ D+ R+ L+NPPFG K K+ Sbjct: 258 NMILHGID-------TPNILHTNTLADNLADVQEKDRYDIILANPPFGGKERKEIQQNFP 310 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 K + + LFL H L+ GGRAA+V+ ++ L N S Sbjct: 311 I--------------KTGETAFLFLQHFIKYLK----AGGRAAVVIKNTFLSNSDNAS-- 350 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +R+ LLE+ + ++ P F + T + + QL Sbjct: 351 KSLRKELLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAATRKTWYYQL-------DPG 403 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 R+ G K +NDD ++ +++ ++ + S ++D++ Sbjct: 404 RSLG-KTNPLNDDDLKEFIELQKDQQESEKSWVVDFKDV 441 >gi|149189420|ref|ZP_01867705.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1] gi|148836778|gb|EDL53730.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1] Length = 504 Score = 186 bits (473), Expect = 9e-45, Method: Composition-based stats. Identities = 99/468 (21%), Positives = 174/468 (37%), Gaps = 68/468 (14%) Query: 38 FTLLRRLEC-------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 L+ + L+ R + E+YL + D E F N Sbjct: 33 LLFLKVFDAQEEELELELDDYREPIPEEYL-WRNWAADAEGMTGDELLEFVN-------- 83 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + L++Y A N + FS ++ LL ++ + I+ D+ Sbjct: 84 ---DDLFPTLKNYAAPIDKNPRGFVAKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSN 139 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +IYE +++ S + A +F TPR V L P + ++ Sbjct: 140 ERHLFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGESIM 187 Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP GTGGFL + +HV + HG E + H +C+ M++ +E Sbjct: 188 DPATGTGGFLACSFDHVKNNYVKTAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV- 246 Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I+ G+TL+K + +NPPFG ++D +EK R Sbjct: 247 -----PVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR--- 295 Query: 327 GLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + + LFL + L+ GGRA +VL LF ++I++ L E Sbjct: 296 ------ETADLFLQLIIEVLDEGSDTKSGGRAGVVLPDGTLFGEGVK---TKIKKMLTEE 346 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 + IV LP +F T I T + + K + +V + K + Sbjct: 347 CNLHTIVRLPNGVFNPYTGIKTNILFFTKGKPTK---EVWFYE--HPYPEGVKNYSKTKP 401 Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 + ++ +Q +D + S E+G SR+ + ++ + + +F LD Sbjct: 402 MKFEEFKQEIDWWGSEEDGFASRVENKHA---WKVSIEEIIERNFNLD 446 >gi|145221399|ref|YP_001132077.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK] gi|145213885|gb|ABP43289.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK] Length = 484 Score = 186 bits (473), Expect = 9e-45, Method: Composition-based stats. Identities = 77/440 (17%), Positives = 157/440 (35%), Gaps = 66/440 (15%) Query: 35 ILPFTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 I +RRL+ LE ++ + GS+ + + F N + Sbjct: 32 ITYLLFIRRLDDLETLEERKARLGAAGELRFGSDQQEFRWSR-----FKNEEPAVMFATV 86 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 L + + +D F + A LL ++ I ++ Sbjct: 87 GEKVFPFLRT-LGGDGSTYGEHMKDARF-----TIPTAQLLSRVVDLLDEIPMN----DR 136 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++YE+L+ + + F TPR ++ L + +P + DP Sbjct: 137 DTNGDLYEYLLSKIA--SAGVNGQFRTPRHIIKLMVDM----------TAPTPADEICDP 184 Query: 213 TCGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 GT GFL A ++ + K + HG + + + ML+ +E Sbjct: 185 AAGTAGFLVAASEYIREQHPSVLTDGAKRKHFHASMFHGYDFDNTMLRIASMNMLMHGIE 244 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 S +I+ +LS+ +++ L+NPPF + + + + + Sbjct: 245 -------SPDIRYRDSLSEGASDDAEKYTLILANPPFAGSLDYESTSKDLQR-------- 289 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + K +LF+ L+ GGRAA+++ LF + ++RR L+E+ Sbjct: 290 ---VVKTKKTELLFVALFLKLLKP----GGRAAVIVPDGVLF--GSSKAHKDLRRMLVED 340 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 ++ IV LP+ +F ++T + + + + +V + T + KR Sbjct: 341 QKLDGIVKLPSGVFRPYAGVSTAILLFTKTNSG-GTDQVWFYDVTADG---FSLDDKRNP 396 Query: 444 INDDQRRQILDIYVSRENGK 463 + + +L + SR + Sbjct: 397 VEANDLPDLLSRWGSRTGSE 416 >gi|200387513|ref|ZP_03214125.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238910689|ref|ZP_04654526.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|199604611|gb|EDZ03156.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 489 Score = 186 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 91/495 (18%), Positives = 176/495 (35%), Gaps = 58/495 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNNYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + + + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---DIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD + E Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQAETVSHDPDELLAQ 460 Query: 512 QSFWLDILKPMMQQI 526 + + ++ + Q+ Sbjct: 461 YAKQQEAIQTLRHQL 475 >gi|307638193|gb|ADN80643.1| typeI restriction-modification system DNA-methyl transferase subunit M [Helicobacter pylori 908] gi|325996788|gb|ADZ52193.1| Type I restriction-modification system DNA-methyltransferase subunit M [Helicobacter pylori 2018] gi|325998380|gb|ADZ50588.1| Type I restriction enzyme modification subunit [Helicobacter pylori 2017] Length = 301 Score = 186 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 129/343 (37%), Gaps = 58/343 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 N + G FY E L+ G + L IA ++ + K + + DF+ Sbjct: 45 AKNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100 Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176 +L + L + K F+ + L D ++ + YE+L+R F SE + Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L E+ +++YDPTCG+G L A + Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290 L +GQE + T A+C M++ + +I +G STLS LF K Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGFSTLSNPLFIKNGMLK 258 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPK 330 F Y ++NPPF K D +++ + K RF G P Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKAVVGDSFNRFEDGTPP 301 >gi|325917800|ref|ZP_08179982.1| type I restriction-modification system methyltransferase subunit [Xanthomonas vesicatoria ATCC 35937] gi|325535974|gb|EGD07788.1| type I restriction-modification system methyltransferase subunit [Xanthomonas vesicatoria ATCC 35937] Length = 489 Score = 186 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 93/509 (18%), Positives = 169/509 (33%), Gaps = 81/509 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTSEY-SLS 89 L+ L+ E + E Y + + D E +F + + L Sbjct: 33 MLFLKILDDR-EQEWELIHEDYRSPLPQRLRWRNWAADPEGITGDELKNFIDIDLFPELR 91 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L +++ F + + F ++ L+ ++ Sbjct: 92 DLTPRHSKP------LGFV--VRDV-----FQDAYNYMKSGQLIRQVLNKIQSGVDFNKA 138 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++YE L+R S + A +F TPR V ++ P + + Sbjct: 139 QERHAFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKV 186 Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP CGTGGFLT A+ H S + G E +P H + M++ +E Sbjct: 187 MDPACGTGGFLTCAIEHKRQRYVRTSEDEAILQASIFGVEKKPLPHLLATTNMVLHGIEV 246 Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 I+ +TL++ G+R ++NPPFG ++G Sbjct: 247 ------PSQIKHDNTLARPLISWGPGERVDCIVANPPFGGME-----------EDGIESN 289 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F + + + LFL+ + + L+ GGRAA+VL LF S I+ LL Sbjct: 290 FPAAF-RTRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLT 341 Query: 384 NDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + IV LP +F + T I T L + + V K Sbjct: 342 ECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTPTK---DVWFYEHQYPAGYKSYSKTKP 397 Query: 442 RIINDDQRRQI-----LDIYVSRENGKFSRMLDYRTFGYRRIKVL-RPLRMSFILDKTGL 495 I + + D + +R+ KF+ + ++ R + + + + Sbjct: 398 MRIEEFATEEAWWGSEADGFAARQENKFAWKVSFKELQSRNWNLDSKNPHVGQQISHDPN 457 Query: 496 ARLEA----DITWRKLSPLHQSFWLDILK 520 L + +L ++ + L+ Sbjct: 458 QLLRSYAALQCEISELRDQLKAVLAEALE 486 >gi|323157624|gb|EFZ43730.1| hypothetical protein ECEPECA14_0478 [Escherichia coli EPECa14] Length = 489 Score = 186 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + V E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMKTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440 >gi|307289959|ref|ZP_07569887.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] gi|306498983|gb|EFM68473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] Length = 330 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 60/355 (16%), Positives = 123/355 (34%), Gaps = 54/355 (15%) Query: 25 DFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDL 69 +++ +L + L L E+Y Sbjct: 1 KMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKE 60 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK---------AIFEDFDF 120 + + Y S L + + + + + +F+D D Sbjct: 61 DLIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFVQLSSTYNQFNGLFDDVDL 120 Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 S ++ + ++ K + +++ V+ + YE LI +F SE + A +F Sbjct: 121 QSKKLGTDEQQRNVTITEVIKKLNDVDVL--GHDGDVIGDAYEFLISQFASEAGKKAGEF 178 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP V + ++ + +++DPT G+G + + N++ P Sbjct: 179 YTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLMLNVRNYLT-------HP 225 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--C 295 + HGQEL T+ + +++ ++++ NI+ G TL+KD T + + + Sbjct: 226 DNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NIRNGDTLNKDWPTDEPYTFDAV 280 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + NPP+ W D ++ R+G L S FL+H L+ Sbjct: 281 VMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKETG 330 >gi|238918025|ref|YP_002931539.1| type I restriction-modification system, M subunit [Edwardsiella ictaluri 93-146] gi|238867593|gb|ACR67304.1| type I restriction-modification system, M subunit [Edwardsiella ictaluri 93-146] Length = 495 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 97/466 (20%), Positives = 166/466 (35%), Gaps = 70/466 (15%) Query: 38 FTLLRRLEC---ALEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 L+ + LE + R E++L + D E A F N + Sbjct: 34 LLFLKVFDAQEEELEFEQDNYRCPIPERFL-WRNWAADSEGLTGDALLDFVNNDLFDSLK 92 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 N N Y+ K FS ++ LL ++ + I+ D+ Sbjct: 93 NQPANIDLNPRGYV------VKEA-----FSDAFNYMKNGTLLKQVINKLNEIDFT-DSS 140 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +IYE ++R S + A +F TPR V + P + + Sbjct: 141 ERHLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGERVM 188 Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP CGTGGFL A +HV + G E + H +C ML+ +E Sbjct: 189 DPACGTGGFLACAFDHVKEHYVETAADHQTLQQQILGVEKKQLPHLLCTTNMLLHGIEV- 247 Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I+ G+TL K L+NPPFG ++D +E+ R Sbjct: 248 -----PVQIRHGNTLDKPLSSWDSDIDVILTNPPFGG---TEEDGIEQNFPADLRTR--- 296 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + +D LFL + L+ GGRAA+VL LF ++I++ L Sbjct: 297 ---ETAD---LFLQLIIEALKK----GGRAAVVLPDGTLFGEGVK---TKIKQLLTSECN 343 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 + IV LP +F T I T + + + + Q + + K + + Sbjct: 344 LHTIVRLPNGVFAPYTGIKTNILFFTKGQPTQDVWFYQ-----HPYPAGVKSYSKTKPMK 398 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 ++ + + +G F+ ++ ++ + + +F LD Sbjct: 399 FEEFEAEIAWWGDEADG-FAARVENE--QAWKVSIETIIERNFNLD 441 >gi|300114984|ref|YP_003761559.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] gi|299540921|gb|ADJ29238.1| N-6 DNA methylase [Nitrosococcus watsonii C-113] Length = 483 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 97/508 (19%), Positives = 179/508 (35%), Gaps = 80/508 (15%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLSTL 91 L+ L+ LE R A+ + + I E+ K A +F + + L Sbjct: 33 LFLKYLDD-LEQER-AMEAELKGQPYTFIIDEAHRWSRWAAPKQADGAFDHDQALTGDDL 90 Query: 92 GSTNTRNNLESYIASFSD----------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 L Y+ F IF + ++ + L + + Sbjct: 91 I-DYVNQELFPYLQGFKQRATAPDTIEYKIGEIFGEIK-----SKFQSGYSLRDVLELVD 144 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + +S++YE I+ G ++ TPR ++ ++ Sbjct: 145 QLHFR-SQKEKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRALIQVI---------- 192 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAG 258 P + +YD G+ GFL +A H+ D S + +G+E + + + + Sbjct: 193 QPKIGERIYDGAVGSAGFLCEAYEHLRPQADSVSQLQTLQSRTFYGKEKKSLAYVIGIMN 252 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + NI +TL++ D RF L+NPPFG K K+ Sbjct: 253 MILHGIE-------APNILHTNTLAENIRDWQEKDRFEVILANPPFGGKERKEVQQNFPI 305 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 K + + LFL H L+ GGRAA+V+ ++ L N S Sbjct: 306 --------------KTGETAFLFLQHFIKTLK----AGGRAAVVIKNTFLSNSDNAS--R 345 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ LLE+ + ++ P F + T + R QL R Sbjct: 346 ALRKELLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAPTRRVWYYQL-------DPGR 398 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 + G K +ND+ ++ L + S + S ++ + V ++ ++T L Sbjct: 399 SLG-KTNPLNDEDFKEFLALQPSFADSAKSWSVEVKDI--NPDTVDLSVKNPNKPEETPL 455 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMM 523 EA I + L+ ++ M+ Sbjct: 456 RESEAIIAEMAALDAESAKILEDIRGML 483 >gi|145589316|ref|YP_001155913.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047722|gb|ABP34349.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 490 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 91/554 (16%), Positives = 186/554 (33%), Gaps = 89/554 (16%) Query: 10 SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61 S+++ I + + D + L L+ + E +++KY + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWELLQDKYKS 55 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119 ++ N + L + + + + + +A Sbjct: 56 PLPEKYRWRNWAA-------NAEGMTGDELKQFLDNDLFPALQNLEAKGGHQRAYVIRSV 108 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F ++ L+ ++ + ++YE L+R + + A +F T Sbjct: 109 FEDAYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYT 166 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKI 236 PR V ++ +P + + DP CGTGGFL+ ++ H+ + Sbjct: 167 PRAVTEFMVQMV----------NPRLGEKVMDPACGTGGFLSCSIEHIRKQDVKTLEDEA 216 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293 G E +P H +C M++ ++ NI+ +TL++ +R Sbjct: 217 QLQGSIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWGPSERVD 270 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPFG ++G F + + + LFL+ + L+ G Sbjct: 271 VVVTNPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQMLKP----G 314 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 GRAA+VL LF ++ I+ LLE + IV LP +F T I T L + Sbjct: 315 GRAAVVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPKGVFAPYTAINTNLLFFTK 371 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD-------IYVSRENGKFS 465 + V + K + + ++ + Y R+ G++S Sbjct: 372 GIPTK---DVWFYE--HPYPEGVKSYNKTKPMRIEEFEAEKEWWGNEGGAYKGRKEGEYS 426 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 R+ + ++ LD ++ + +L + D + + + Sbjct: 427 ----------WRVSIRDIKDRNYNLDIKNPHIVDREAEDPELLLAQYNLLQDDINRLKSE 476 Query: 526 IYPYGWAESFVKES 539 + + K S Sbjct: 477 LKTVLGQALYAKNS 490 >gi|331000343|ref|ZP_08324024.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859] gi|329572139|gb|EGG53804.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859] Length = 701 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 131/327 (40%), Gaps = 42/327 (12%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ IYE+LI +F S + A +F TP +V L ++ ++YDP Sbjct: 6 DVLGFIYEYLIGQFASSAGKKAGEFYTPHEVSELMAEIVAYSLKDR------ERISVYDP 59 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 T G+G L + G K + QE+ T+ + +++R + D Sbjct: 60 TSGSGSLLITIGKAIEKQG---KSTDSIRYFAQEIIEATYNLIRMNLVMRGIIRDNISTS 116 Query: 273 SKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + TL D +SNPP+ KW D A + +N Sbjct: 117 NN-----DTLRNDWPRNTLKDEPLLVDAVVSNPPYSLKWNPDGMAADPRFQN-------Y 164 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 GL S FL+H L+ G IVL LF G E IR LL+ + Sbjct: 165 GLAPKSAADFAFLLHDLYHLKYD----GILTIVLPHGVLFRGGE---EERIRTQLLKLNQ 217 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+A++ LP ++FF T I T + +L + ++ V I+A+ + + + + Sbjct: 218 IDAVIGLPPNIFFGTGIPTIIMVLRKSREQK---DVLFIDASKGFEKVTA----KNKLRA 270 Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRT 472 R+ ++++ R+ + FSR + + Sbjct: 271 RDIRKAVEVWKDRKELEGFSRRVSFEE 297 >gi|283786953|ref|YP_003366818.1| type I restriction modification system HsdM component [Citrobacter rodentium ICC168] gi|282950407|emb|CBG90057.1| putative type I restriction modification system HsdM component [Citrobacter rodentium ICC168] Length = 500 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 104/546 (19%), Positives = 192/546 (35%), Gaps = 69/546 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M+ F+ + + N +W A L D G + T L L+ V L Sbjct: 1 MSNFSVT--DIVNRVWGYANILRDDGISN--GDYVEQLTFL----IFLKMNAERVSLGKL 52 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + + +K++G S +S LG + + + E F Sbjct: 53 KGNIVSDAWDELLKLSGESLLTKYSKIISQLGES-----------------EGLLETI-F 94 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 +++ AG L K+ + V IYE ++++ +GA + TP Sbjct: 95 YGAQNKIQDAGKLKKLILMINEEVWLSSNFD--VKGAIYEGILQKSADTEKKGAGQYFTP 152 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHK 235 R ++ + P ++T+ DP CGTGGFLT A +++ + H Sbjct: 153 RALIEAIVEAV----------DPEPMQTIADPACGTGGFLTVAHDYIFNKIDKNEVDKHS 202 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G E+ +C + + + S I L K+ Sbjct: 203 FLRNSTFSGNEISSSVARLCAMNLYLHEI-----GIYSNPISVSDALES--KPSKKVDIV 255 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPFG+K + ++K + + R + + ++ + FL H+ N L+ G+ Sbjct: 256 LANPPFGRKSTFTIN-IDKSKIDNKYIRDDFWV-ETTNKQLNFLQHICNMLKKD----GK 309 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN--R 413 AA+V + LF+ AG +IRR LL+ + ++ LPT +F+ + + N Sbjct: 310 AAVVFPDNILFDSGAG---EKIRRKLLDEYNLHTVLRLPTGIFYAQGVKANVLFFDNCID 366 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K R KV + K + + + +Y + SR + Sbjct: 367 KKRPRTEKVWFYDLRTSIHKTF----KHNKLIRSDFNEFIALYK--KENIESRK-STWST 419 Query: 474 GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 + +F ++ L + DI W K +QS ++ ++ I + Sbjct: 420 DVTKYSTPNGRWRAFSYEEILLRDKANLDIQWLKEDVFNQSENIESSPVLVDSIIELLSS 479 Query: 533 ESFVKE 538 Sbjct: 480 ALDDFR 485 >gi|307824354|ref|ZP_07654580.1| Site-specific DNA-methyltransferase (adenine-specific) [Methylobacter tundripaludum SV96] gi|307734734|gb|EFO05585.1| Site-specific DNA-methyltransferase (adenine-specific) [Methylobacter tundripaludum SV96] Length = 594 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 90/550 (16%), Positives = 178/550 (32%), Gaps = 97/550 (17%) Query: 10 SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61 S+++ I + + D + L L+ + E +++ Y + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWEILQDNYQS 55 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119 ++ N + L + + + + + +A Sbjct: 56 PLPEQYRWRNWAA-------NAEGMTGDALKQFLDNDLFPALQQLEAKGGDQRAYVIRSV 108 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F ++ L+ ++ + ++YE L+R S + A +F T Sbjct: 109 FEDAYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQSAGN--AGEFYT 166 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKI 236 PR V ++ +P + + DP CGTGGFL+ ++ H+ + Sbjct: 167 PRAVTEFMVRMV----------NPRLGEKVLDPACGTGGFLSCSIEHIRKQDVLTVDDEA 216 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293 G E +P H +C M++ ++ NI+ +TL++ +R Sbjct: 217 RLQASIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWGPKERVD 270 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPFG ++G F P + + + LFL+ + L+ G Sbjct: 271 VVVTNPPFGGME-----------EDGIETNF-PATFRTRETADLFLVLIMQMLK----AG 314 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 GRAA+VL LF ++ I+ LLE + IV LP +F T I T L S Sbjct: 315 GRAALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSK 371 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQI----------LDIYVSREN 461 + G K + + D + R Sbjct: 372 GTPTRHI---------WFYEHPYPPGVKNYNKTKPMKIAEFDAEAAWWGKETDGFKQRVE 422 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 +++ ++ + ++ LD E +I +L + + + Sbjct: 423 NQYA----------WKVGIDDIKARNYNLDSKNPHIGEQEIHDPELLLAQYNTMQNDIAA 472 Query: 522 MMQQIYPYGW 531 + Q+ Sbjct: 473 LRGQLKDILD 482 >gi|188492484|ref|ZP_02999754.1| type I restriction-modification system, M subunit [Escherichia coli 53638] gi|188487683|gb|EDU62786.1| type I restriction-modification system, M subunit [Escherichia coli 53638] Length = 489 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + V E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440 >gi|255308059|ref|ZP_05352230.1| type I restriction modification system M subunit [Clostridium difficile ATCC 43255] Length = 487 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 82/490 (16%), Positives = 165/490 (33%), Gaps = 73/490 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ T++ L I + + F N N Sbjct: 35 LLFIKGLDEV--ETKNEAEATLLGVSFERIFDDGHQHLRWSKFSNEGNSEKMYEIVQNEV 92 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + D+A I ++ +L KI S +EL D + Sbjct: 93 FPFIKKLHGNKDSAY----AKYMGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + L+ P + DP G+ Sbjct: 146 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL + ++ D S + + +G +++ + M++ ++ Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NI+ +LS+ +F L+NPPF + + + + + K Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGR A ++ LF + G IR+ +++N +EAI Sbjct: 296 TKKTELLFLALFLRVLK----IGGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + KV + + KR I D Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNEIKDSDI 405 Query: 450 RQILDIYV------SRENGKFSRMLDYRTFG----------YRRIKVLRPLRMSFILDKT 493 I+ + R+ + S +D Y+ + + + + Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVIYDAPNVILG 465 Query: 494 GLARLEADIT 503 + LE +I Sbjct: 466 RVKELEKEIA 475 >gi|260858510|ref|YP_003232401.1| type I restriction-modification enzyme M subunit [Escherichia coli O26:H11 str. 11368] gi|257757159|dbj|BAI28661.1| type I restriction-modification enzyme M subunit [Escherichia coli O26:H11 str. 11368] Length = 493 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + V E I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMKTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444 >gi|264677662|ref|YP_003277568.1| type I restriction-modification system subunit M [Comamonas testosteroni CNB-2] gi|262208174|gb|ACY32272.1| type I restriction-modification system, M subunit, putative [Comamonas testosteroni CNB-2] Length = 253 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 56/232 (24%) Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544 R L L ++ TWR+ Q + + + ++I + + E I + Sbjct: 29 REEIALSPKNRKELLSEATWRE-----QRDIMQAAQQLAEKIGTGEFLDFNRFEDIVDDA 83 Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVT----------------------DVNG--- 579 K L +K + +NA +D RA+ V D G Sbjct: 84 LKALGLKLAAPARKQILNAVSWRDERAEKVIKKVHKLNAAKLNDLLNQLGTTRDKLGDYG 143 Query: 580 ----------EWIPDTNLTEYENVPYLES--------IQDYFVREVSPHVPDAYIDKIFI 621 E+ PD+ L + ENVP I DYF+REV PHV +A+I Sbjct: 144 YMATPTGEYIEYEPDSELRDTENVPLALDTSLSASSVIHDYFIREVRPHVDEAWIAIDK- 202 Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 +GYEI+FN++FYQ++P R L+++ AE+ +EA+ LL+++ + Sbjct: 203 -------TVIGYEISFNKYFYQHKPLRSLEEVTAEILALEAETDGLLKQLVS 247 >gi|114048354|ref|YP_738904.1| N-6 DNA methylase [Shewanella sp. MR-7] gi|113889796|gb|ABI43847.1| N-6 DNA methylase [Shewanella sp. MR-7] Length = 500 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 96/514 (18%), Positives = 170/514 (33%), Gaps = 64/514 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E S I E + + L + Sbjct: 33 LLFLKIFDA-----QEQELEFEQDDYRSPIPSEYLWRHWAEDKEGITGDELLEFVNNALF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 +L++ A N + FS ++ LL ++ + ++ D+ + + Sbjct: 88 VDLKNLTAPKDTNPRGYVVKEAFSDAFNYMKNGTLLRQVINKLNEVDFT-DSSERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V + +P + + DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTKFMVNRI----------NPQLGEKVLDPACGTG 194 Query: 218 GFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFL A+ H+ S HG E + H +C ML+ +E Sbjct: 195 GFLACAVEHLKAQVSTAAQHQQLQQQIHGVEKKQLPHLLCTTNMLLHGIEV------PVQ 248 Query: 276 IQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 I+ G+TLS+ ++NPPFG ++D +EK R + +D Sbjct: 249 IKHGNTLSQPLSSWDNDVDVIITNPPFGGT---EEDGIEKNFPADMQTR------ETAD- 298 Query: 335 SMLFLMHLANKLEL---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 LFL + L+ GGRAA+VL LF ++I++ L E + IV Sbjct: 299 --LFLQLIIEVLKDGSASNGKGGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIV 353 Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN-DDQR 449 LP +F T I T + + + + V + K + + ++ Sbjct: 354 RLPNGVFAPYTGIKTNILFFTKGQPTK---DVWFYE--HPYPDGVKNYSKTKPMKFEEFE 408 Query: 450 RQI------LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 +I D + SR + + + V R + G Sbjct: 409 AEIAWWGYEADGFASRVENEHAWKVSIDE------IVARNFNLDIKNPHVGEQISHDPDE 462 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 Q+ + + + ++ K Sbjct: 463 LLARYATEQAEIQTLRDQLKAILGDALGKDAVKK 496 >gi|149203576|ref|ZP_01880545.1| N-6 DNA methylase [Roseovarius sp. TM1035] gi|149142693|gb|EDM30735.1| N-6 DNA methylase [Roseovarius sp. TM1035] Length = 495 Score = 185 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 98/477 (20%), Positives = 153/477 (32%), Gaps = 91/477 (19%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGD----FKHTDFGKVI--LP-FTLLRRLECALEPTRS 53 M T + +W+ A+ L G + L L+ L E T Sbjct: 1 MNPNTA---DIVAKLWREAKTLQGAGISIM------HYVNELTYLLFLKML----EETGQ 47 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 K G + L LG +N A Sbjct: 48 T------TLIPPAYSWTELSKAEGGDQLRYYKKLLLDLGDPEIVHN---------PMVLA 92 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I F+ I L + L + N I+ + + ++YE L+++ S+ Sbjct: 93 I-----FTDAITHLREPKDLKTLTTNIDKIDWFTAR--EDGLGDMYEGLMQKVMSDTKSK 145 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A + TPR ++ L+ P + DP GTGGFL A ++ D Sbjct: 146 AGQYFTPRALIDSIIRLI----------QPQPGEVIQDPATGTGGFLIAADRYIKDATDD 195 Query: 234 --------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + G E P+T +CV ML+ +ES + + Sbjct: 196 LFKLSEDQGRFQRRQAFRGHEWVPDTRRLCVMNMLLHGIESLVG--------CEDSCAPQ 247 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 R L+NPPF K + R GP M FL H Sbjct: 248 GEALGRADVILTNPPFNKMPGG---VNRPDFTLTAGERVGP---------MPFLEHAIRM 295 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GGR AIV+ + LF G +E+RR+L+ N + I+ LPT +F+ + T Sbjct: 296 LKP----GGRCAIVMPDNILFGDGLG---TELRRFLMVNCNLHTILRLPTGIFYAQGVKT 348 Query: 406 YLWILSN--RKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVS 458 + + K KVQ A + N K + + ++ S Sbjct: 349 NVMFFTRVTDKVYPANHKVQGTQAVWFYDLRTNMPSFGKTNALTAQHFEEFERLFGS 405 >gi|167970986|ref|ZP_02553263.1| type I restriction-modification system, M subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701152|gb|EDU19434.1| type I restriction-modification system, M subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 367 Score = 185 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 154/381 (40%), Gaps = 44/381 (11%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V + YE+L+ + + + +F TP++V L L L + K+ I +YDP Sbjct: 19 DVFGDAYEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDP 78 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + K+ + +GQE+ T+ + M + + D Sbjct: 79 CCGSGSLLL----------KYAKLNEGVKFYGQEINLTTYNLARINMFLHNIGYDK---- 124 Query: 273 SKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPK 330 +I+ G TL + F +SNPP+ KWE + + RF L Sbjct: 125 -FDIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLLAN-----DERFHVTQLAP 178 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEA 389 F++H+ + L G AAIV+ L+ A E +IR++L +++++ Sbjct: 179 KGKADFAFVLHILHNLSSS----GTAAIVMFPGTLYRDHA---EQDIRKYLVDNVNVVDS 231 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQ 448 ++ LP +LFF T+I+T + +L K + ++A+ + G K + + Sbjct: 232 VIQLPDNLFFGTSISTCIIVLRKNKNNNDNANGILFVDASKEFV---KSGIK-NKLTNAN 287 Query: 449 RRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 ++I+D ++ + S+++ + + ++ ++ KL Sbjct: 288 IKKIVDTIRFKKEVTYFSKLVSREEV--------KNKNYNLSVNTYVEKEDTSEKIDIKL 339 Query: 508 SPLHQSFWLDILKPMMQQIYP 528 + + ++ + ++I Sbjct: 340 LNMQIKEIVAKIEKLRKEIDE 360 >gi|158522106|ref|YP_001529976.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158510932|gb|ABW67899.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 481 Score = 185 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 153/458 (33%), Gaps = 68/458 (14%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + +AN +W L D+G I T L L+ A E +Y + Sbjct: 1 MSDVANKLWGFCHTLR--HDGIDYGDYIEQLTYLMFLKMAHEKGIDLSAVEYE-----DN 53 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127 + + F S T+ + + + + S + D F+ + R Sbjct: 54 QETVRLDCSWQPFVEKS--------GTDLLDAFANILRALSRQP-GLLGDI-FTQAMPRF 103 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L K+ +P V +E L+ + +E +GA + TPR ++ Sbjct: 104 TNPVNLKKVINMIDETLW--SEMPVDVKGAAFEGLLEKSAAEGKKGAGQYFTPRALIQSI 161 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------PILV 241 ++ T+ DP CGT GFL A + Sbjct: 162 VTVMRP------DPRKQKDFTICDPACGTAGFLMVAYEWLMAVSKGALDRKEVARIKKQT 215 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 GQEL P + + + + LE I G ++ + G+R+ L+NPPF Sbjct: 216 YFGQELVPRPRRLALMNLFLHGLE--------PQIYLGDSIYEPD-RGERYDCILTNPPF 266 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G K + V + S+ + F+ H+ L+ GGRAA+VL Sbjct: 267 GTKGAN-QAPVRDDF-----------TVSTSNKQLNFIQHVVTILKP----GGRAAMVLP 310 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERR 419 + LF AG +L+E+ + ++ LP F + + + + Sbjct: 311 DNVLFADAAGEVIG----YLMEDCNVHTLLRLPNGTFSPYSQGVKANVIFFQKG---VKT 363 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + + + T+I KK R + + Y Sbjct: 364 ENIWIYDGR---TNIPGVTKKERPLTPAMFDEFEKCYG 398 >gi|188577907|ref|YP_001914836.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522359|gb|ACD60304.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 489 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 86/462 (18%), Positives = 155/462 (33%), Gaps = 76/462 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTSEY-SLS 89 L+ L+ E + E Y + + D E +F + + L Sbjct: 33 MLFLKILDDR-EQEWELIHEDYRSPLPQRLRWRNWAADPEGITGDELKNFIDIDLFPELR 91 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L +++ F + + F ++ L+ ++ Sbjct: 92 DLTPRHSKP------LGFV--VRDV-----FQDAYNYMKSGQLIRQVLNKIQSGVDFNKA 138 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++YE L+R S + A +F TPR V ++ P + + Sbjct: 139 QERHAFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKV 186 Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP CGTGGFLT A+ H + + G E +P H + M++ +E Sbjct: 187 MDPACGTGGFLTCAIEHKRQRYVRTAEDEAILQASIFGVEKKPLPHLLATTNMVLHGIEV 246 Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 I+ +TL++ G+R ++NPPFG ++G Sbjct: 247 ------PSQIKHDNTLARPLISWGPGERVDCIVANPPFGGME-----------EDGIESN 289 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F + + + LFL+ + + L+ GGRAA+VL LF S I+ LL Sbjct: 290 FPAAF-RTRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLT 341 Query: 384 NDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + +V LP +F + T I T L + + V K Sbjct: 342 ECNLHTVVRLPNGVFNPY-TGIKTNLLFFTKGTPTK---DVWFYEHQYPAGYKSYSKTKP 397 Query: 442 RIINDDQRRQI-----LDIYVSRENGKFSRMLDYRTFGYRRI 478 + + + D + +R+ +F+ + + R Sbjct: 398 MRVEEFTVEEAWWGSEADGFAARQENEFAWKVSFDELQRRNW 439 >gi|330992550|ref|ZP_08316498.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1] gi|329760749|gb|EGG77245.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1] Length = 149 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 12/111 (10%) Query: 567 KDPRADPVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622 + V G+ +PD++L + ENVP E I YF REV PH PDA+ID+ Sbjct: 47 RGEDGKIVLGQRGKAKGKPVPDSSLRDTENVPLDEDIHTYFKREVLPHAPDAWIDEDK-- 104 Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 ++GYEI FNR+FY ++P R L++IDA+LK V A+I +L E++ Sbjct: 105 ------TKIGYEIPFNRYFYVFEPPRPLEEIDADLKEVTAKIMAMLGELSA 149 >gi|191639033|ref|YP_001988199.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus casei BL23] gi|190713335|emb|CAQ67341.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus casei BL23] gi|327383093|gb|AEA54569.1| Type I restriction-modification system, M subunit [Lactobacillus casei LC2W] gi|327386277|gb|AEA57751.1| Type I restriction-modification system, M subunit [Lactobacillus casei BD-II] Length = 329 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 118/284 (41%), Gaps = 42/284 (14%) Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 + L T + + + + T+YDPT G+G L +A + + Sbjct: 1 MSRLITQIAMHGKEDV------RGFTIYDPTMGSGSLLLNARRY-------SNERLSINY 47 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPP 300 GQEL T+ + M++ + + ++++ TL +D F + NPP Sbjct: 48 FGQELNTSTYNLARMNMILHGVPIN-----NQHLHNADTLDQDWPIEEPTNFDAVVMNPP 102 Query: 301 FGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 + W+ K RF GL S FL+H L+ G IV Sbjct: 103 YSAHWQPSKGTEN-------DPRFVSYGLAPKSKADFAFLLHGYYHLKDT----GVMCIV 151 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 L LF G A E IR+ LLEN I+ ++ LP ++FF T+I T + +L K Sbjct: 152 LPHGVLFRGGA---EGRIRKALLENGAIDTVIGLPANIFFNTSIPTTVTVL---KKSRTT 205 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 V I+A+ + +N + + DD ++IL+ Y++R++ Sbjct: 206 RDVLFIDASKEFEKAKN----QNHLTDDNIQKILETYINRKDVD 245 >gi|152987952|ref|YP_001351361.1| type I restriction-modification system subunit M [Pseudomonas aeruginosa PA7] gi|150963110|gb|ABR85135.1| type I restriction-modification system, M subunit [Pseudomonas aeruginosa PA7] Length = 489 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 89/486 (18%), Positives = 160/486 (32%), Gaps = 75/486 (15%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S+++ I + + D G+++ L+ + R E S Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDD-----REQEWELLDDAYRS 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDFDF 120 I + + L N L++ + +S + +FE Sbjct: 56 PIPESCRWRTWAADPEGITGDELKNFIDNNLFPQLQN-LHEYSTTPAAYVVRGVFE---- 110 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ L+ ++ ++YE L+R + + A +F TP Sbjct: 111 -DAYNYMKSGQLIRQVINKIQEGVDFNKAQERHAFGDMYEQLLRDL--QNAGNAGEFYTP 167 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIP 237 R V ++ P + + DP CGTGGFLT + H + + Sbjct: 168 RPVTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCTIEHKRSRYVKTAEDERV 217 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294 G E +P H + M++ +E I+ +TLS+ G+R Sbjct: 218 LQASIFGVEKKPLPHLLATTNMILHGIEV------PSQIKHDNTLSRPLISWGPGERVDC 271 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPFG ++G F + + + LFL+ + + L+ GG Sbjct: 272 IVANPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMHLLKD----GG 315 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412 RAA+VL LF S I+ LL + IV LP +F + T I T L + Sbjct: 316 RAAVVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTK 371 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI-----LDIYVSRENGKFSRM 467 + +V K I + + D + +R +F+ Sbjct: 372 GSPTK---EVWFYEHQYPAGYKSYSKTKPMRIEEFAVEEAWWGSEADGFAARVENEFAWK 428 Query: 468 LDYRTF 473 + Sbjct: 429 VSLDEL 434 >gi|268592727|ref|ZP_06126948.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131] gi|291311501|gb|EFE51954.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131] Length = 490 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 86/405 (21%), Positives = 158/405 (39%), Gaps = 53/405 (13%) Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + + L++ A N + FS ++ LL ++ + I+ T Sbjct: 83 NDDLFPALKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFSNST-ER 141 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +IYE ++R S + A +F TPR V + P + ++ DP Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPRLGESIMDP 189 Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 CGTGGFL A +HV + + G E + H +C ML+ +E Sbjct: 190 ACGTGGFLACAFDHVKEHYVKTTEDHKTLQQQIFGVEKKQLPHLLCTTNMLLHGIEV--- 246 Query: 270 RDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 I+ +TL+K ++F ++NPPFG ++D +EK R Sbjct: 247 ---PVQIRHDNTLNKPLSAWDEQFDVIITNPPFGG---TEEDGIEKNFPAEMQTR----- 295 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 + +D LFL + L GRAA+VL LF ++I++ L E + Sbjct: 296 -ETAD---LFLQLIIEVLSDK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLH 344 Query: 389 AIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 IV LP +F + T I T + + + + ++ + K + + Sbjct: 345 TIVRLPNGVFNPY-TGIKTNILFFTKGQPTK---EIWFYE--HPYPEGVKNYSKTKPMKF 398 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 ++ + +D + + +G SR + + ++ + + +F LD Sbjct: 399 EEFQTEIDWWGNEADGFASREENNQA---WKVSIDEIIARNFNLD 440 >gi|332141624|ref|YP_004427362.1| type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|332143450|ref|YP_004429188.1| type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327551646|gb|AEA98364.1| type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327553472|gb|AEB00191.1| type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 713 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 111/609 (18%), Positives = 196/609 (32%), Gaps = 104/609 (17%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRS-- 53 +A L + + + + GD LP L+ L+ LE R Sbjct: 12 TTAQQLGAIVKSSRQIMRKDKGLNGDLDR-------LPMLTWIMFLKFLDD-LEQMRETE 63 Query: 54 AVRE--KYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR--NNLES 102 AV E + + + + G +F N E + G+ L S Sbjct: 64 AVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAFINNDEA-MRPDGTRGIGLFAYLRS 122 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + + + F R+ LL + +GI + +S +YE + Sbjct: 123 LQGDNGGDRRDVIATV-FKGMQNRMINGYLLRDVVDKINGIHF-NSSEEMHTLSRLYETM 180 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R + +F TPR VV ++ P + ++ DP CGTGGFL + Sbjct: 181 LREMRDAAG-DSGEFYTPRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVE 229 Query: 223 AMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 A H+ ++ G E + + + +L+ LE I Sbjct: 230 AFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-------PRIDPE 282 Query: 280 STLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 ++L L R LSNPPFG E + G LG F + + Sbjct: 283 NSLRFPLREMGDKDRVDVILSNPPFG-----------GEEEKGILGNFPEDMQTAETVQL 331 Query: 337 LFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 FL + KL+ NG GGRAA+V+ S L++G +R+ LL + + I+ L Sbjct: 332 -FLQLIMRKLKRKGNGSVTGGRAAVVVPESVLYDGGVAQ---RVRKQLLSDFNLHTIIRL 387 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR------RIIN 445 P +F + +I + + + Q + G K + Sbjct: 388 PKGVFEPYS-DIQSNILFFDRNGPTKGVWFYQ------HEVPVERRGMKNPCYTVTNALK 440 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRT-------FGYRRIKVLRPLRMSFILDKTGLARL 498 +++ +I Y S +++ + F +R + + + L+ Sbjct: 441 EEEMAEIRTWYESPCESEYAWFVPSEDIRSKDFSFDFRNPRKEQQELKDPEHLQQALSSY 500 Query: 499 EADITWRKL---SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA--- 552 + I S H +D +I + E + K + VK Sbjct: 501 LSRIENSNANFQSESHTIRNIDKKSWNEFKIGDFLIRSKNSIELEDDVDYKQITVKLYGK 560 Query: 553 SKSFIVAFI 561 + Sbjct: 561 GAVLRKTIL 569 >gi|13357655|ref|NP_077929.1| type I restriction enzyme M protein (fragment) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762197|ref|YP_001752181.1| type I restriction-modification system, M subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508500|ref|ZP_02689853.2| type I restriction-modification system, M subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11357066|pir||E82933 type I restriction enzyme M protein, truncated homolog UU098 [imported] - Ureaplasma urealyticum gi|6899053|gb|AAF30504.1|AE002110_2 type I restriction enzyme M protein (fragment) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827774|gb|ACA33036.1| type I restriction-modification system, M subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675928|gb|EDT87833.1| type I restriction-modification system, M subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 348 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 154/380 (40%), Gaps = 44/380 (11%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + + YE+L+ + + + +F TP++V L L L + K+ I +YDP Sbjct: 1 MFGDAYEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDPC 60 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CG+G L + K+ + +GQE+ T+ + M + + D Sbjct: 61 CGSGSLLL----------KYAKLNEGVKFYGQEINLTTYNLARINMFLHNIGYDK----- 105 Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPKI 331 +I+ G TL + F +SNPP+ KWE + + RF L Sbjct: 106 FDIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLLAN-----DERFHVTQLAPK 160 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAI 390 F++H+ + L G AAIV+ L+ A E +IR++L ++++++ Sbjct: 161 GKADFAFVLHILHNLSSS----GTAAIVMFPGTLYRDHA---EQDIRKYLVDNVNVVDSV 213 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQR 449 + LP +LFF T+I+T + +L K + ++A+ + G K + + Sbjct: 214 IQLPDNLFFGTSISTCIIVLRKNKNNNDNANGILFVDASKEFV---KSGIK-NKLTNANI 269 Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 ++I+D ++ + S+++ + + ++ ++ KL Sbjct: 270 KKIVDTIRFKKEVTYFSKLVSREEV--------KNKNYNLSVNTYVEKEDTSEKIDIKLL 321 Query: 509 PLHQSFWLDILKPMMQQIYP 528 + + ++ + ++I Sbjct: 322 NMQIKEIVAKIEKLRKEIDE 341 >gi|218667350|ref|YP_002426004.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519563|gb|ACK80149.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 484 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 92/505 (18%), Positives = 177/505 (35%), Gaps = 71/505 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLST 90 L+ L+ LE R A+ + + I ++F K A + S Sbjct: 32 LLFLKYLDA-LEQDR-AMEAELEGRPYTFILEDAFRWEHWAAPKTADGRMDHHKAMSGDD 89 Query: 91 LGSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIEL 145 L L Y++ F A I FS +++ L +I + G+ Sbjct: 90 LR-DFVNIRLFPYLSGFKRRATGSNTIEYKIGEIFSEIKNKIQSGYNLREIVEIIDGLRF 148 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 +S++YE I+ G ++ TPR ++ ++ +P + Sbjct: 149 R-SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAIVQVV----------APKV 196 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YD G+ GFL +A +++ + +G+E + + + + M++ Sbjct: 197 GEKIYDGAVGSAGFLCEAFDYLKAQPGLTTGDMQTLQERTFYGKEKKSLAYVIAIMNMIL 256 Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ++ + NI +TL++ D+ R L+NPPFG K K+ Sbjct: 257 HGID-------APNIVHTNTLAENLMDIQPKDRVDVVLANPPFGGKERKEVQQNFPI--- 306 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 K + + LFL H L+ GGRA +V+ ++ L N S +R Sbjct: 307 -----------KTGETAFLFLQHFIRMLK----AGGRAGVVIKNTFLSNTDNAS--VSLR 349 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 + LLE+ + ++ LP F + T + + QL RN G Sbjct: 350 KLLLEDCNLHTVLDLPGGTFQGAGVKTVVLFFDKGAPTRKVWYYQL-------NPGRNMG 402 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 K +ND+ + + + ++ + S +D R + D+ L Sbjct: 403 -KTNPLNDNDLAEFVALQKTKADSPQSWTVDVSGIDTR--TYDLSAKNPNGGDEKVLRSP 459 Query: 499 EADITWRKLSPLHQSFWLDILKPMM 523 E + + L ++ ++ Sbjct: 460 EEILDEIAALDAESAEVLAAIRGLL 484 >gi|26991424|ref|NP_746849.1| type I restriction-modification system, M subunit [Pseudomonas putida KT2440] gi|24986496|gb|AAN70313.1|AE016672_4 type I restriction-modification system, M subunit [Pseudomonas putida KT2440] Length = 489 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 93/485 (19%), Positives = 168/485 (34%), Gaps = 63/485 (12%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S+++ I + + D G+++ L+ + E + + Y + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-ELEWELMDDNYKSPIPD 59 Query: 66 NIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSST 123 + ++ G + ++ + L NL Y + S +++FE Sbjct: 60 SCRWRTWAADPEGMTGDALKDFIDNNLFPQ--LQNLHEYSNTPSAFVVRSVFE-----DA 112 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ LL ++ N+YE L+R + + A +F TPR V Sbjct: 113 YNYMKSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPV 170 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240 ++ P + + DP CGTGGFLT A+ H + + Sbjct: 171 TEFMVRMV----------DPKLAEKVMDPACGTGGFLTCAIEHKRRRYVKTAEDERTLQA 220 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLS 297 G E +P H + M++ +E I+ +TLSK +R H ++ Sbjct: 221 SIFGVEKKPLPHLLATTNMILHGIEV------PSQIRHDNTLSKPLISWGPSERVHCIVA 274 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG ++G F + + + LFL+ + L+ GGRAA Sbjct: 275 NPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLKD----GGRAA 318 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 +VL LF S I+ LL + IV LP +F + T I T L + Sbjct: 319 VVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTP 374 Query: 416 EERRGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 ++ Q ++ R + + + D + +R F+ + Sbjct: 375 TKQVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSEADGFAARAENAFAWQVSVEEL 434 Query: 474 GYRRI 478 R Sbjct: 435 QARNW 439 >gi|145301150|ref|YP_001143991.1| type I restriction-modification system M subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142853922|gb|ABO92243.1| type I restriction-modification system M subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 478 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 167/449 (37%), Gaps = 73/449 (16%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ IW L GD + + + L+ + EK + G Sbjct: 2 KQDNIIQKIWGLCNILRGDGITYYQYVSELSYLLFLK-------IAQENGSEKLIPKGYR 54 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 IDLES + FY +L +Y+ ++ +AI+ F +T+ Sbjct: 55 WIDLESHTEDGLLGFY------------QEMLTHLGAYVE--NEVVRAIYA---FPTTV- 96 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + L + S IE H V +Y LI + + GA + TPR +V+ Sbjct: 97 -FSHSENLKAVINGISKIEWH--QVGKDGFGELYSGLIDKSAQDTRSGAGQYFTPRSLVN 153 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHG 244 L+ P + + DP G+GGFL A N++ + K G Sbjct: 154 TILRLI----------QPNLGELIQDPATGSGGFLVSADNYIRNKYPREKYKANPPKCQG 203 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 E+E T +C+ + L+ NI G L+ D+ ++NPPFG K Sbjct: 204 VEIEKNTRRICLMNTFLHELD--------ANIIYGDALTDDVAELAEADVIIANPPFGNK 255 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + +P ++ + FL H+ L+ GGRAA+VL + Sbjct: 256 AGGQRPLRND-------------IPFPNANKQLAFLQHIYLGLKP----GGRAAVVLPDN 298 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER---RG 420 LF G +E+RR L+ + I+ LPT +F+ + T + + +++ Sbjct: 299 VLFEAGVG---TEVRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSAKDKYQEES 355 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQR 449 Q + DL T++ + G KR + Sbjct: 356 CTQNVWVYDLRTNMPSFG-KRTPFGNSDI 383 >gi|298292635|ref|YP_003694574.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya novella DSM 506] gi|296929146|gb|ADH89955.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya novella DSM 506] Length = 482 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 91/459 (19%), Positives = 155/459 (33%), Gaps = 62/459 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 +A SL +W A L + I L+ + R + + Sbjct: 2 NAQSLVAKVWNFAHVLRDQGVSYQAYISQISYLLFLKM-----DEERVTLIGEASMLPD- 55 Query: 66 NIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 S + + L + + + S I F Sbjct: 56 -----------------GSRWDNIKGLSGEALNSAYVKLLGTLSKQG-GIIGAI-FLKAQ 96 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 ++ L ++ +P V +IYE L+ R +V GA + TPR V+ Sbjct: 97 NEIQDPAKLKRLVGLIDSETWL--GLPVDVKGDIYEGLLARNAEDVKSGAGQYFTPRAVI 154 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI----PPIL 240 ++ P +T++DP CGT GFL A H+ Sbjct: 155 DAMVEVV----------DPEPQQTVHDPACGTAGFLLAAWEHMKKHPRAQDKATYLALKN 204 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 G ++ PE + + + + +K+ G GK + L+NPP Sbjct: 205 KFSGVDIVPEVVRLAAMNLYLHGITGVDSIVEAKDALLG-------AGGKSYDIILTNPP 257 Query: 301 FG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 FG + + +D E +++ + R + S+ + FL H+ L G AA+ Sbjct: 258 FGRKQSYRIVRDDGEIDNEREDYDRQDFFVT-TSNKQLNFLQHIMTVLAPD----GEAAV 312 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 VL + LF G A GE+ IRR LL N ++ LPT +F++ + + K Sbjct: 313 VLPDNVLFEGGA--GET-IRRRLLRNFDFHTLLRLPTGIFYKQGVKANVLFFDK-KPPSD 368 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + + DL T+ R K R + + Y Sbjct: 369 EAATRDLWIYDLRTNQR-FTLKERPMVRADLDDFVQCYR 406 >gi|295402726|ref|ZP_06812667.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus thermoglucosidasius C56-YS93] gi|294975225|gb|EFG50862.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus thermoglucosidasius C56-YS93] Length = 485 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 96/549 (17%), Positives = 194/549 (35%), Gaps = 82/549 (14%) Query: 7 SAASLANFIWKNAEDLW--GDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + SL N I + L + + +V+ L+ L + Sbjct: 2 TKESLENIIASCTDILRTDDGISGSVHYTEVLSWILFLKFLND-----KEKELALEAEVN 56 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFEDFD 119 D + + + S+ N+L Y+AS + + + Sbjct: 57 FEEYDY-LLEEKYRWDNWAISKDLTGDDLINFVNNDLIPYLASLKGEHEKDRREVISAI- 114 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F R+ LL + + IE + +MS++YE L+++ G + + +F T Sbjct: 115 FKEVTNRVHSGYLLKDVLLKVNQIEF-NSSDDIFIMSHLYESLLQKMGDDGG-NSGEFYT 172 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238 PR VV ++ P + +T+YDP CGT GFL ++ H+ + + Sbjct: 173 PRPVVRFMVEMI----------DPQVGKTVYDPACGTCGFLVESYEHMKKQANTPEKVKI 222 Query: 239 --ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293 +GQE P + + + ML+ ++ I++ +TL+++ + +++ Sbjct: 223 LAEKTFYGQEKTPLAYLLGLMNMLLHGIDY-------PQIRKTNTLNQNIREIDESQKYD 275 Query: 294 YCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 Y L+NPPF GK+ + + E + E +LFL ++ L+ Sbjct: 276 YILANPPFGGKEQKIIQKNFPVEAQATE---------------LLFLQYIMKTLKFD--- 317 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411 G+A ++L LF ++ LL+ + IV+LP +F + + T + Sbjct: 318 -GKAGVILPEGVLFR--TNEAYKTVKEELLQKFNVHTIVSLPAGVFLPYSAVKTSIIFFD 374 Query: 412 NRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + + Q LI+ L K I+ + + ++ R N + S + Sbjct: 375 RTTSTKDIWFYQVPLIDGKKL--------TKSNGISKEHFEEARKLFKERPNTENSWL-- 424 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 + V ++ + L + + + ++L + I Sbjct: 425 --------VPVEEVIKNEYNLSAAKYNPNKVEEEELLDPEEYAEEIYELLISATKSISSL 476 Query: 530 GWAESFVKE 538 A E Sbjct: 477 MTAGDEANE 485 >gi|56418878|ref|YP_146196.1| type I restriction modification system M subunit [Geobacillus kaustophilus HTA426] gi|56378720|dbj|BAD74628.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Geobacillus kaustophilus HTA426] Length = 484 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 73/404 (18%), Positives = 149/404 (36%), Gaps = 53/404 (13%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + K GI+ P ++YE+L+ + + F TPR ++H+ L+ Sbjct: 123 LVKIVDGIDRIP-MKDRDTKGDLYEYLLSKIATAG--TNGQFRTPRHIIHMMVELM---- 175 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELE 248 P + DP G+ GFL A ++ S + + +G +++ Sbjct: 176 ------KPTPEDIIVDPAAGSAGFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMD 229 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 + M++ +E + NI+ +LS+ ++ L+NPPF K D Sbjct: 230 RTMLRIGAMNMMLHGIE-------NPNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLD 280 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 DAV + + K +LFL L+ GGR A ++ LF Sbjct: 281 YDAVSNDLLK---------VVKTKKTELLFLALFLRILKT----GGRCACIVPDGVLF-- 325 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINA 427 + +IR+ ++EN +EAI+++P+ +F ++T + I + +V + Sbjct: 326 GSSKAHKDIRKEIVENHKLEAIISMPSGVFKPYAGVSTAIMIFTKT-GLGGTDQVWFYDM 384 Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 + KR I ++ I+ + +RE K + + F + V Sbjct: 385 KADGY---SLDDKRTPIEENDIPDIIARFHNREAEKERKRTEQSFF----VPVEEIREND 437 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + L +E + + + ++ +++ + Sbjct: 438 YDLSINKYKEIEYEEVQYEAPSVIIKRIKELENDILKGLGELED 481 >gi|313500655|gb|ADR62021.1| HsdM [Pseudomonas putida BIRD-1] Length = 489 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 93/485 (19%), Positives = 168/485 (34%), Gaps = 63/485 (12%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S+++ I + + D G+++ L+ + E + + Y + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-ELEWELMDDNYKSPIPD 59 Query: 66 NIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSST 123 + ++ G + ++ + L NL Y + S +++FE Sbjct: 60 SCRWRTWAADPEGMTGDALKDFIDNNLFPQ--LQNLHEYSNTPSAFVVRSVFE-----DA 112 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ LL ++ N+YE L+R + + A +F TPR V Sbjct: 113 YNYMKSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPV 170 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240 ++ P + + DP CGTGGFLT A+ H + + Sbjct: 171 TEFMVRMV----------DPKLAEKVMDPACGTGGFLTCAIEHKRSRYVKTAEDERTLQA 220 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLS 297 G E +P H + M++ +E I+ +TLSK +R H ++ Sbjct: 221 SIFGVEKKPLPHLLATTNMILHGIEV------PSQIRHDNTLSKPLISWGPSERVHCIVA 274 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG ++G F + + + LFL+ + L+ GGRAA Sbjct: 275 NPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLKD----GGRAA 318 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 +VL LF S I+ LL + IV LP +F + T I T L + Sbjct: 319 VVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTP 374 Query: 416 EERRGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 ++ Q ++ R + + + D + +R F+ + Sbjct: 375 TKQVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSEADGFAARAENAFAWQVSVEEL 434 Query: 474 GYRRI 478 R Sbjct: 435 QARNW 439 >gi|300718521|ref|YP_003743324.1| type I restriction enzyme EcoEI M protein [Erwinia billingiae Eb661] gi|299064357|emb|CAX61477.1| Type I restriction enzyme EcoEI M protein [Erwinia billingiae Eb661] Length = 490 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 91/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + T+ E I + + + L + + Sbjct: 33 LLFLKIFD-----TQEEELELEQDDYQLPIPERYLWRTWAANSEGITGDELLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+S IA N + FS ++ LL ++ + I+ + + + Sbjct: 88 PTLKSMIAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSSERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R + + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILRDL--QNAGNAGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV + + G E + H +C ML+ +E Sbjct: 195 GFLACSFDHVKEHYVKTTEDHKTLQKQIFGVEKKQLPHLLCTTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQVDVFVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPDGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + S +G SR + + ++ + + +F LD Sbjct: 404 EIDWWGSEADGFASREENNQA---WKVSIDDIIARNFNLD 440 >gi|254976626|ref|ZP_05273098.1| type I restriction modification system M subunit [Clostridium difficile QCD-66c26] gi|255094011|ref|ZP_05323489.1| type I restriction modification system M subunit [Clostridium difficile CIP 107932] gi|255315762|ref|ZP_05357345.1| type I restriction modification system M subunit [Clostridium difficile QCD-76w55] gi|255518423|ref|ZP_05386099.1| type I restriction modification system M subunit [Clostridium difficile QCD-97b34] gi|255651541|ref|ZP_05398443.1| type I restriction modification system M subunit [Clostridium difficile QCD-37x79] gi|260684596|ref|YP_003215881.1| type i restriction enzyme m subunit [Clostridium difficile CD196] gi|260688254|ref|YP_003219388.1| type i restriction enzyme m subunit [Clostridium difficile R20291] gi|306521356|ref|ZP_07407703.1| type I restriction enzyme M protein [Clostridium difficile QCD-32g58] gi|260210759|emb|CBA65674.1| type i restriction enzyme m subunit [Clostridium difficile CD196] gi|260214271|emb|CBE06583.1| type i restriction enzyme m subunit [Clostridium difficile R20291] Length = 487 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 81/489 (16%), Positives = 165/489 (33%), Gaps = 73/489 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ T++ L I + + F N N Sbjct: 35 LLFIKGLDEV--ETKNEAEATLLGVSFEKIFDDEHQHLRWSKFSNEGNSEKMYEIVQNEV 92 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + ++A I ++ +L KI S +EL D + Sbjct: 93 FPFIKKLHGNKESAY----AKYMGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + L+ P + DP G+ Sbjct: 146 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL + ++ D S + + +G +++ + M++ ++ Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NI+ +LS+ +F L+NPPF + + + + + K Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGR A ++ LF + G IR+ +++N +EAI Sbjct: 296 TKKTELLFLALFLRVLK----IGGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + KV + + KR I D Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNEIKDSDI 405 Query: 450 RQILDIYV------SRENGKFSRMLDYRTFG----------YRRIKVLRPLRMSFILDKT 493 I+ + R+ + S +D Y+ + + + + Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVVYDAPSVIIG 465 Query: 494 GLARLEADI 502 + LE +I Sbjct: 466 RVKVLEKEI 474 >gi|291086066|ref|ZP_06354740.2| type I restriction-modification system, M subunit [Citrobacter youngae ATCC 29220] gi|291069286|gb|EFE07395.1| type I restriction-modification system, M subunit [Citrobacter youngae ATCC 29220] Length = 493 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 95/508 (18%), Positives = 182/508 (35%), Gaps = 58/508 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E S I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEALELEQDNYQSPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNNYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD + E Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQAETVSHDPDELLAQ 464 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKES 539 + + ++ + Q+ A KE+ Sbjct: 465 YAKQQEEIQTLRHQLRDILGAALSGKEA 492 >gi|110644784|ref|YP_672514.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536] gi|110346376|gb|ABG72613.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536] Length = 501 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 45 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 206 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + + K + + ++ + Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYD--HPYPAGVKNYSKTKPMKFEEFQA 415 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 416 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 452 >gi|320644442|gb|EFX13507.1| Type I restriction-modification system, M subunit [Escherichia coli O157:H- str. 493-89] Length = 489 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLKFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K L + ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440 >gi|146396|gb|AAA23984.1| restriction-modification enzyme type I M subunit [Escherichia coli] Length = 489 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD + E Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 460 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538 + ++ + Q+ A VKE Sbjct: 461 YAKQQAEIQTLRNQLRDILGAALSVKE 487 >gi|255102190|ref|ZP_05331167.1| type I restriction modification system M subunit [Clostridium difficile QCD-63q42] Length = 487 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 82/489 (16%), Positives = 165/489 (33%), Gaps = 73/489 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ T++ L I + + F N N Sbjct: 35 LLFIKGLDEV--ETKNEAEATLLGVSFERIFNDEHQHLRWSKFSNEGNSEKMYEIVQNEV 92 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + D+A I ++ +L KI S +EL D + Sbjct: 93 FPFIKKLHGNKDSAY----AKYMGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + L+ P + DP G+ Sbjct: 146 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL + ++ D S + + +G +++ + M++ ++ Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NI+ +LS+ +F L+NPPF + + + + + K Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGR A ++ LF + G IR+ +++N +EAI Sbjct: 296 TKKTELLFLALFLRVLK----IGGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + KV + + KR I D Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNEIKDSDI 405 Query: 450 RQILDIYV------SRENGKFSRMLDYRTFG----------YRRIKVLRPLRMSFILDKT 493 I+ + R+ + S +D Y+ + + + + Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVVYDAPSVIMG 465 Query: 494 GLARLEADI 502 + LE +I Sbjct: 466 RVKALEKEI 474 >gi|24115564|ref|NP_710074.1| putative restriction modification enzyme M subunit (methylase) [Shigella flexneri 2a str. 301] gi|24054895|gb|AAN45781.1| putative restriction modification enzyme M subunit (methylase) [Shigella flexneri 2a str. 301] Length = 501 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 45 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HQYPAGVKNYSKTKPMKFEEFQA 415 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 452 >gi|262165309|ref|ZP_06033046.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio mimicus VM223] gi|262025025|gb|EEY43693.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio mimicus VM223] Length = 496 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 93/461 (20%), Positives = 172/461 (37%), Gaps = 58/461 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + + + I+ + + L + + Sbjct: 33 LLFLK----VFDAQEEELELELDDYKAP-INERYLWRNWAADAQGITGDKLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 NL++ A N + F ++ LL ++ + I+ DT + + Sbjct: 88 YNLKNMAAPVDTNPRGYVVKEAFRDAYNYMKNGTLLRQVINKLNEIDFT-DTQERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V L P + ++DP+CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVDRL----------DPKLGENVFDPSCGTG 194 Query: 218 GFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 GFLT A+NH+ + G HG E + H +C+ +++ +E Sbjct: 195 GFLTCAINHIQEHGKPETSEQYATFQKQFHGVEKKQLPHLLCITNLMLHGIEV------P 248 Query: 274 KNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I+ +TL+K + +NPPFG ++D +EK R + + Sbjct: 249 SQIKHDNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETA 299 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 D LFL + L+ GRA +VL LF ++I++ L E + IV Sbjct: 300 D---LFLQLIIEVLDP---ANGRAGVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVR 350 Query: 393 LPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 LP +F + T I T + + K + V + K + + ++ + Sbjct: 351 LPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPEGVKNYSKTKPMKFEEFQ 404 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + E+G SR+ + ++ + + +F LD Sbjct: 405 AEIDWWGNEEDGFASRVENNHA---WKVSIDEIIARNFNLD 442 >gi|15828553|ref|NP_325913.1| restriction-modification enzyme subunit M3 (fragment) [Mycoplasma pulmonis UAB CTIP] gi|14089495|emb|CAC13255.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT) [Mycoplasma pulmonis] Length = 332 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 39/344 (11%) Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V L A+L +P ++YDP CGTGG A ++ L Sbjct: 1 MVELMVAIL----------NPESDSSIYDPCCGTGGMFIQAKQYLQKNNL---PTDELKI 47 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 +GQE + +T + +++ + D D ++ T + DL K+F L+NPPF Sbjct: 48 YGQEFQNQTWKLARINLILNGFDPD---DTHLGLRSEDTFNDDLTGNKKFDIVLANPPFN 104 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K + D RF G+P +G+ ++ H+ KL GRAAIVL++ Sbjct: 105 VKKWQTNDISG-------DPRFAWGMPPEGNGNYAWISHIVYKLNRK----GRAAIVLAN 153 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 + + + E IR+ +LE + IEAI++LP LF+ T IA +WI +N+K Sbjct: 154 GSVSSSQKN--ELAIRKKMLEENKIEAIISLPDKLFYTTGIAATIWIFNNQKE---NDDF 208 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 LINA +L K R + +I+D+Y GK D R + + Sbjct: 209 LLINAEELGELESK---KLRHLTKSNIEKIVDVYKQFREGKKINEKDLA----RSVSLDE 261 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + L + ++ L + + Sbjct: 262 IKENDYSLVPGRYIEYSNEDIDKEEIIKEILEIEAELNSLFKDF 305 >gi|166711014|ref|ZP_02242221.1| type I restriction-modification system, M subunit [Xanthomonas oryzae pv. oryzicola BLS256] Length = 489 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 88/462 (19%), Positives = 154/462 (33%), Gaps = 76/462 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTSEY-SLS 89 L+ L+ E + E Y + + D E SF + + L Sbjct: 33 MLFLKILDDR-EQEWELIHENYRSPLPQRLRWRNWAADPEGITGDELKSFIDIDLFPDLR 91 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L +++ F + + F ++ L+ ++ Sbjct: 92 DLTPRHSKP------LGFV--VRDV-----FQDAYNYMKSGQLIRQVLNKIQSGVDFNKA 138 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++YE L+R S + A +F TPR V ++ P + + Sbjct: 139 QERHAFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKV 186 Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP CGTGGFLT A+ H + + G E +P H + M++ +E Sbjct: 187 MDPACGTGGFLTCAIEHKRQRYVRTAEDEAILQASIFGVEKKPLPHLLATTNMVLHGIEV 246 Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 I+ +TL++ G+R ++NPPFG ++G Sbjct: 247 ------PSQIKHDNTLARPLISWGPGERVDCIVANPPFGGME-----------EDGIESN 289 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F + + + LFL+ + + L+ GGRAA+VL LF S I+ LL Sbjct: 290 FPAAF-RTRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLT 341 Query: 384 NDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + +V LP +F + T I T L + R V K Sbjct: 342 ECNLHTVVRLPNGVFNPY-TGIKTNLLFFTKG---TRTKDVWFYEHQYPAGYKSYSKTKP 397 Query: 442 RIINDDQRRQI-----LDIYVSRENGKFSRMLDYRTFGYRRI 478 + + + + +R+ KF+ + + R Sbjct: 398 MRVEEFAVEEAWWGSEATGFAARQENKFAWKVSFDELQRRNW 439 >gi|270292633|ref|ZP_06198844.1| type I restriction-modification system, M subunit [Streptococcus sp. M143] gi|270278612|gb|EFA24458.1| type I restriction-modification system, M subunit [Streptococcus sp. M143] Length = 497 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 83/509 (16%), Positives = 170/509 (33%), Gaps = 70/509 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ ++L I + + +F N + T Sbjct: 35 LLFMKDLDSV--ELGRESDAEFLGISYEGIFPKDKPEYRWSTFKNIGDAQEVYRLMTQEI 92 Query: 98 NNLESYIAS------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF----SGIELHP 147 + FS + + +T+ ++ I F SGI+ Sbjct: 93 FPFMKNLKGDTDDTAFSRYMREAIFQINKPATLQKV------ISILDEFPTRDSGIDFDS 146 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 DT + +IYE+L+ + + F TPR ++ + L+ + Sbjct: 147 DTQGINDIGDIYEYLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS------- 197 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGML 260 DP G+ GFL A ++ + HG + + + M+ Sbjct: 198 ---DPAMGSAGFLVSASRYLKRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMM 254 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + +E + I +LS+D ++ L+NPPF + D + + Sbjct: 255 LHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTSNDL------ 301 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 K +LFL L+ GGRAA+++ LF + IR+ Sbjct: 302 -----LATVKTKKTELLFLALFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQE 350 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 ++EN ++A++++P+ +F ++T + I + KV + + + Sbjct: 351 IVENHKLDAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDD 406 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 KR+ I+D+ I+ + EN + D F + V + L +E Sbjct: 407 KRQPISDNDIPDIIQRFHQLENEAERKRTDQSFF----VPVDEIKDNDYDLSINKYKEIE 462 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + + + + D+ K + + Sbjct: 463 YEKVEYEPTEVILKKINDLEKEIQAGLAE 491 >gi|162453796|ref|YP_001616163.1| type I restriction-modification system M subunit [Sorangium cellulosum 'So ce 56'] gi|161164378|emb|CAN95683.1| probable type I restriction-modification system,M subunit [Sorangium cellulosum 'So ce 56'] Length = 486 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 97/549 (17%), Positives = 178/549 (32%), Gaps = 74/549 (13%) Query: 8 AASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65 + +W L H D+ + I L+ ++ +R R + Sbjct: 1 MTDVVGKLWGFCHTLRHDGIDHGDYIEQITYLLFLKMASERGIDLSRVEHRTPRGEVDAT 60 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + + +G + + L +L A + + S Sbjct: 61 DCSWPALRARSGQALLDRYADVLRSLDG-----------------APGVLGEIYAGSQ-P 102 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 R + L K+ IE V + YE L+ + +E +GA + TPR ++ Sbjct: 103 RFKSPASLGKLVDLIDEIEWTRLGVDIQA--AAYEGLLEKAAAEGKKGAGQYFTPRALIQ 160 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------SHHKIPPI 239 + L DP CGTGGFL A + + Sbjct: 161 SIVRCIRPD------PQGKPGFALCDPACGTGGFLVAAWEWIEAEARGALDREAARRIKA 214 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 GQEL + + + + +E I G +L D +RF L+NP Sbjct: 215 GAFFGQELVARPRRLALMNLYLHGIE--------PRITLGDSL--DAPPDERFDVILTNP 264 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG K + R ++ + F+ H+ L GGRAA+V Sbjct: 265 PFGTKGAYE------------TPRREDFAIATANKQLNFIQHVLTILRP----GGRAAMV 308 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417 L LF +A + L + ++ LP F + + + + + E Sbjct: 309 LPDHCLFADQA----GAVLEILARGCDLHTVLRLPHGTFTPYSAGVKANVVFFTKGRATE 364 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG-YR 476 +V + +A T + + KK R ++ + Y +G+ +R + G +R Sbjct: 365 ---RVWIYDAR---TGVPSITKKGRPLSPAHFAEFERCYGGDPDGRGAREAASSSEGRFR 418 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 ++ F LD + E + P + D L+ + + + + + Sbjct: 419 SFELREVKEREFKLDGLRWLK-EESLDEAGEMPEPEELATDALQELTEAVAALNRVLALL 477 Query: 537 KESIKSNEA 545 + K+ EA Sbjct: 478 EGGAKAAEA 486 >gi|331666164|ref|ZP_08367045.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli TA271] gi|331066375|gb|EGI38252.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli TA271] Length = 489 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD + E Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 460 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538 + ++ + Q+ A VKE Sbjct: 461 YAKQQAEIQTLRNQLRDILGAALSVKE 487 >gi|148549814|ref|YP_001269916.1| N-6 DNA methylase [Pseudomonas putida F1] gi|148513872|gb|ABQ80732.1| N-6 DNA methylase [Pseudomonas putida F1] Length = 489 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 165/491 (33%), Gaps = 75/491 (15%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S+++ I + + D G+++ L+ + R E S Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDD-----REQEWELLDDDYRS 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDFDF 120 I + + + +L N L++ + +S + +FE Sbjct: 56 PIPESCRWRTWAANPEGITGDALKDFIDNNLFPQLQN-LHEYSTTPATYVVRGVFE---- 110 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ L+ ++ ++YE L+R + + A +F TP Sbjct: 111 -DAYNYMKSGQLIRQVINKIQEGVDFNKAQERHAFGDMYEQLLRDL--QNAGNAGEFYTP 167 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIP 237 R V ++ P + + DP CGTGGFLT ++ H + + Sbjct: 168 RPVTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCSIEHKRKRYVQTAEDERA 217 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294 G E +P H + M++ +E I+ +TL + +R Sbjct: 218 LQASIFGVEKKPLPHLLATTNMILHGIEV------PNQIKHDNTLGRPLISWGPAERVDC 271 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPFG ++D +E R + +D LFL+ + + L+ GG Sbjct: 272 IVANPPFGG---MEEDGIETNFPTAFRTR------ETAD---LFLVLIMHLLKD----GG 315 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412 RAA+VL LF S I+ LL + IV LP +F + T I T L + Sbjct: 316 RAAVVLPDGFLFGEGIKS---RIKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFTK 371 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI-----LDIYVSRENGKFSRM 467 + V K + + + +D + +R +F+ Sbjct: 372 GTPTK---DVWFYEHQYPAGYKSYSKTKPMRVEEFAVEEAWWGSEVDGFAARRENEFAWK 428 Query: 468 LDYRTFGYRRI 478 + + R Sbjct: 429 VSFDELQNRNW 439 >gi|194443867|ref|YP_002043769.1| type I restriction-modification system M subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402530|gb|ACF62752.1| type I restriction-modification system, M subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 489 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 95/512 (18%), Positives = 180/512 (35%), Gaps = 66/512 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E + + + L + + Sbjct: 33 LLFLKIFDA-----QEQALEIEQEKYRLPMPERYLWRNWAADNEGITGDKLLAFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PTLKDLPAQIDINPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-RASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R + + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILRDLQAAGN--AGEFYTPRAVTRFMVERV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + +H HG E + H +C ML+ +E Sbjct: 195 GFLACAFDHVKNHYAHTVTDHQILQKQIHGVEKKQLPHLLCTTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK + R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQMDVIITNPPFGG---TEEDGIEKNFPSDMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR----RIINDD 447 P +F + T I T L + + + + G K + + + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTKE---------IWFYEHPHPAGVKNYSKTKPMKFE 399 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 + + +D + + +G SR+ + + ++ + + +F LD + E Sbjct: 400 EFQAEIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQAETVSHDPDE 456 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 + + ++ + Q+ A KE+ Sbjct: 457 LLAQYAKQQEEIQTLRHQLRDILGAALSGKEA 488 >gi|333010422|gb|EGK29855.1| hypothetical protein SFVA6_0215 [Shigella flexneri VA-6] Length = 486 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440 >gi|257457514|ref|ZP_05622682.1| type I restriction-modification system [Treponema vincentii ATCC 35580] gi|257445137|gb|EEV20212.1| type I restriction-modification system [Treponema vincentii ATCC 35580] Length = 480 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 77/438 (17%), Positives = 144/438 (32%), Gaps = 84/438 (19%) Query: 1 MTEFTGS----AASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRS 53 M + + +L +W A+ L F I+ T L L Sbjct: 1 MAKKQATPAKPEQALTKKVWNMADVL-----AAAGIGFTDYIIQLTYLLFL--------- 46 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 ++ + G + + + L Y + Sbjct: 47 --------------KMDFEKESYGLGSALPDGSKWKDIVQLDGPDQLVKY-----EKILE 87 Query: 114 IFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + + D F+ ++ K LL K+ ++ + IYE ++ + G Sbjct: 88 VLQATDGLIGAIFTEAQNKIAKPALLKKLIGMIDEENWF--SMDGDLKGAIYESILEKNG 145 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + GA + TPR +++ ++ P + T+ DP CGTGGFL A +++ Sbjct: 146 QDKKSGAGQYFTPRPLINAMVDVV----------QPKITETVADPACGTGGFLLAAYDYM 195 Query: 228 ADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + G ++ P + + + + +D I+ +L Sbjct: 196 RKQSDEQSKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGADTTP-----IKCEDSLEH 250 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + L+NPPFG + D + S+ + FL H+ Sbjct: 251 E--PEHLVDVLLANPPFGARPAGSVDISTMRSDL---------IVTTSNNQLNFLQHIMV 299 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ GGRA IVL + LF AG +R+ LL++ + I+ LPT +F+ + Sbjct: 300 MLKD----GGRAGIVLPDNVLFADGAGEI---LRKKLLKDFNLHTILRLPTGIFYANGVK 352 Query: 405 TYLWILSNRKTEERRGKV 422 + K + Sbjct: 353 ANVLFFEKGKPTQETWYY 370 >gi|26251230|ref|NP_757270.1| putative restriction modification enzyme M subunit [Escherichia coli CFT073] gi|26111663|gb|AAN83844.1|AE016772_22 Putative restriction modification enzyme M subunit [Escherichia coli CFT073] Length = 507 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 51 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 105 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 106 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 164 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 165 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 212 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 213 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 266 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 267 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 317 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 318 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 367 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 368 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 421 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD + E Sbjct: 422 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 478 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538 + ++ + Q+ A VKE Sbjct: 479 YAKQQAEIQTLRNQLRDILGAALSVKE 505 >gi|322615695|gb|EFY12615.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618756|gb|EFY15645.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621830|gb|EFY18680.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627555|gb|EFY24346.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630862|gb|EFY27626.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637920|gb|EFY34621.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643846|gb|EFY40394.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651075|gb|EFY47460.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656669|gb|EFY52957.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659906|gb|EFY56149.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661885|gb|EFY58101.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666369|gb|EFY62547.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672788|gb|EFY68899.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676217|gb|EFY72288.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680702|gb|EFY76740.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684404|gb|EFY80408.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194258|gb|EFZ79455.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197405|gb|EFZ82545.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201478|gb|EFZ86542.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205992|gb|EFZ90954.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213004|gb|EFZ97806.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215377|gb|EGA00121.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223293|gb|EGA07630.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226180|gb|EGA10397.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228833|gb|EGA12962.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236556|gb|EGA20632.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239944|gb|EGA23991.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242009|gb|EGA26038.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247843|gb|EGA31780.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251517|gb|EGA35388.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258116|gb|EGA41793.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263741|gb|EGA47262.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265665|gb|EGA49161.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270110|gb|EGA53558.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 489 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 166/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNNYVQSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + + + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---DIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + + SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADSFASRVENEQA---WKVSIDEVIARNFNLD 440 >gi|313646314|gb|EFS10776.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a str. 2457T] gi|332749087|gb|EGJ79510.1| hypothetical protein SFK671_5131 [Shigella flexneri K-671] gi|332749700|gb|EGJ80116.1| hypothetical protein SF274771_5150 [Shigella flexneri 2747-71] gi|333009052|gb|EGK28508.1| hypothetical protein SFK218_0156 [Shigella flexneri K-218] gi|333022253|gb|EGK41491.1| hypothetical protein SFK304_0030 [Shigella flexneri K-304] Length = 489 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440 >gi|108563889|ref|YP_628205.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] gi|107837662|gb|ABF85531.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] Length = 670 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 91/397 (22%), Positives = 164/397 (41%), Gaps = 46/397 (11%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R F SE + F TP +V L E+ +++YDPTCG+G L Sbjct: 1 MRHFASESGKSKGQFYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLK 54 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--S 280 A + L +GQE + T A+C M++ +I +G S Sbjct: 55 ASSLA--------GKNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSS 99 Query: 281 TLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKIS 332 TLS LFT + F Y ++NPPF K D +++ + K N RF G P Sbjct: 100 TLSNPLFTTENGMLKTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEK 159 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 +G FL+H+ L+ G+ A++L LF G A E IR+ LL I+ ++ Sbjct: 160 NGDFAFLLHIIKSLKNT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIG 212 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 L +LF+ T+I + +L + R+G V +I+A+ + + +G K R + + +++ Sbjct: 213 LAPNLFYGTSIPACVIVLDKKNARARKG-VFVIDASKDF---KKDGNKNR-LREQDVQKM 267 Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSP 509 +D + + + +S+M+ + P ++ + A + + K Sbjct: 268 IDTFNALKEIPYYSKMVSLEEISANDYNLNIPRYIAAKQESEKDLFALINSPSYLPKNEI 327 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 + + + K + ++ E + + K Sbjct: 328 NLYAPYFRVFKELKNTLFKKSDKEGYYALKTECENIK 364 >gi|302880109|ref|YP_003848673.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella capsiferriformans ES-2] gi|302582898|gb|ADL56909.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella capsiferriformans ES-2] Length = 491 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 82/491 (16%), Positives = 158/491 (32%), Gaps = 87/491 (17%) Query: 10 SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61 S+++ I + + D + L L+ + E +++ Y + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWELLQDNYQS 55 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119 ++ N + L + + + + +A Sbjct: 56 PLPEAYRWRNWAA-------NPEGMTGEALKQFLDNEMFPALQQLEARGGDQRAYVIRSV 108 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F ++ L+ ++ + ++YE L+R + + A +F T Sbjct: 109 FEGAYNYMKSGQLIRQVVNKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYT 166 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKI 236 PR V + +P + + DP CGTGGFL+ ++ H+ + Sbjct: 167 PRAVTEFMVRM----------TNPRLGEKVMDPACGTGGFLSCSIEHIRRQDVKTVDDEA 216 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293 G E +P H +C M++ ++ NI+ +TL++ +R Sbjct: 217 ALQASIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWTPKERVD 270 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPFG ++G F + + + LFL+ + L+ G Sbjct: 271 VVVTNPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLK----AG 314 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 GRAA+VL LF ++ I+ LLE + IV LP +F T I T L S Sbjct: 315 GRAALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSK 371 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQI----------LDIYVSREN 461 + + G K + + D + R Sbjct: 372 GAPTQHI---------WFYEHPYPAGVKSYNKTKPMKIEEFDVEAAWWGVESDGFAHRVE 422 Query: 462 GKFSRMLDYRT 472 + + + Sbjct: 423 NEQAWKVSLDD 433 >gi|332083324|gb|EGI88555.1| hypothetical protein SB521682_5204 [Shigella boydii 5216-82] gi|332083825|gb|EGI89043.1| hypothetical protein SD15574_5337 [Shigella dysenteriae 155-74] Length = 489 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440 >gi|218692732|ref|YP_002400944.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli ED1a] gi|218430296|emb|CAV18172.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli ED1a] Length = 501 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 45 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 452 >gi|323481373|gb|ADX80812.1| Type I restriction-modification system methylation subunit [Enterococcus faecalis 62] Length = 343 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 49/340 (14%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY------ 59 L ++ A++L +++ +L + L L E+Y Sbjct: 4 ELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLTDESLEEYDTVSKQ 63 Query: 60 -----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA 111 + + Y S L + + + L +F A Sbjct: 64 TMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQLA 123 Query: 112 ------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 +F+D D S ++ + ++ K + +E+ V+ + YE L Sbjct: 124 STYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEFL 181 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I +F SE + A +F TP V + ++ + +++DPT G+G + + Sbjct: 182 ISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLN 235 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 N++ P + HGQEL T+ + +++ ++++ N++ G TL Sbjct: 236 VRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTL 283 Query: 283 SKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGE 320 +KD T + + + + NPP+ W D ++ N Sbjct: 284 NKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSRFNRY 323 >gi|164687376|ref|ZP_02211404.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM 16795] gi|164603800|gb|EDQ97265.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM 16795] Length = 486 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 78/489 (15%), Positives = 174/489 (35%), Gaps = 74/489 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ T+ +L I + + F N + + + Sbjct: 35 LLFIKGLDD--NETQKESDAIFLGIPFEGIFPQDKQHLRWNKFKNEEPTVMYDIMANEVF 92 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + ++A I ++ A +L KI +E+ D + Sbjct: 93 P-FIKNLHGDGESAY----SKYMGDAIFKIPTALMLAKIIDGIDKLEIDNK---DDNKGD 144 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + +L+ P T+ DP G+ Sbjct: 145 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVSLM----------KPTPQDTIVDPAAGSA 192 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL + ++ D + + + +G +++ + M++ ++ Sbjct: 193 GFLVSSQQYLRDNHADLFLVQSLKEHFNNDMFYGFDMDRTMLRIGAMNMMLHGVD----- 247 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NI+ +LS+ +++ L+NPPF + + + + K Sbjct: 248 --NPNIEYKDSLSEVNTDSEKYSLVLANPPFKGSLDYEAVGADL-----------LKVTK 294 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGR A ++ LF + G +IR+ ++EN+ +EAI Sbjct: 295 TKKTELLFLALFLRILKK----GGRCASIVPDGVLF--GSTKGHKDIRKEIVENNKLEAI 348 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + KV + + KR + ++ Sbjct: 349 ISMPSGVFKPYAGVSTAIIIFTKT-GNGGTDKVWFYDMKADGY---SLDDKRNPVEENDI 404 Query: 450 RQILDIYV------SRENGKFSRMLDYRTF----------GYRRIKVLRPLRMSFILDKT 493 I++ + R+ + S +D Y+ I+ + + + Sbjct: 405 PDIIERFDNLDKEVDRKRTEQSFFVDKSEIVENGYDLSINKYKEIEYEEVVYDAPEVILG 464 Query: 494 GLARLEADI 502 + LE +I Sbjct: 465 RVKELEDEI 473 >gi|222036089|emb|CAP78834.1| restriction modification enzyme Msubunit [Escherichia coli LF82] gi|312948975|gb|ADR29802.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli O83:H1 str. NRG 857C] Length = 489 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440 >gi|332749354|gb|EGJ79775.1| hypothetical protein SF434370_4721 [Shigella flexneri 4343-70] gi|332768711|gb|EGJ98890.1| hypothetical protein SF293071_0006 [Shigella flexneri 2930-71] Length = 476 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 20 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 74 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 75 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 133 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 134 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 181 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 182 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 235 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 236 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 286 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 287 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 336 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 337 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 390 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 391 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 427 >gi|219851547|ref|YP_002465979.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c] gi|219545806|gb|ACL16256.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c] Length = 478 Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats. Identities = 83/462 (17%), Positives = 151/462 (32%), Gaps = 87/462 (18%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + +W L D+G I ++ + + Sbjct: 1 MSDIVQKLWGFCHTLR--HDGIDYGDYIEQITYLLFIKMAD------------ERSVALP 46 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 D ++ V +G + L TLG+ + + D F+ + Sbjct: 47 EGCDWKALVSRSGTDLTDHYVDLLRTLGTEH-----------------GLLGDI-FAGAL 88 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 ++ L ++ E + V +E L+ + SE +GA + TPR V+ Sbjct: 89 SQFTNPVNLKRLIGLIDETEWTELNID--VKGEAFEGLLEKAASEGKKGAGQYFTPRIVI 146 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIP 237 + T+ DP CGTGGFL + + + Sbjct: 147 QSIVRCMKP------DPRKRSDLTICDPACGTGGFLVCSFEWLLEQTKGGALDREVALRV 200 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQEL + + + + +E +I+ G ++ ++ G+RF L+ Sbjct: 201 KKGTYFGQELVARPRRLALMNLFLHNVE--------PSIKFGDSIYENP-DGRRFDVVLT 251 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K E S+ + F+ H+ L+ GGRAA Sbjct: 252 NPPFGTKGANQAPDRED------------FTISTSNKQLNFVQHVMTILKP----GGRAA 295 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 +V+ + LF A E+ + L+E+ + I+ LP F + T + + Sbjct: 296 VVVPDNVLFADAA----GEVFKVLMEDCNLHTILRLPNGTFTPYSPGTKTNVLFFTKGFP 351 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 E + D T++ KK R + + Y Sbjct: 352 TET------LWVYDDRTNVPGITKKDRPLTPAYFEEFERAYG 387 >gi|227885168|ref|ZP_04002973.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia coli 83972] gi|300980748|ref|ZP_07175163.1| N-6 DNA Methylase [Escherichia coli MS 45-1] gi|301048309|ref|ZP_07195340.1| N-6 DNA Methylase [Escherichia coli MS 185-1] gi|227837997|gb|EEJ48463.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia coli 83972] gi|300299817|gb|EFJ56202.1| N-6 DNA Methylase [Escherichia coli MS 185-1] gi|300409163|gb|EFJ92701.1| N-6 DNA Methylase [Escherichia coli MS 45-1] gi|307556580|gb|ADN49355.1| type I restriction-modification system, M subunit [Escherichia coli ABU 83972] gi|315293300|gb|EFU52652.1| N-6 DNA Methylase [Escherichia coli MS 153-1] Length = 501 Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats. Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 45 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + + ++ + + +F LD + E Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 472 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538 + ++ + Q+ A VKE Sbjct: 473 YAKQQAEIQTLRNQLRDILGAALSVKE 499 >gi|293408035|ref|ZP_06651875.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354] gi|291472286|gb|EFF14768.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354] Length = 493 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 444 >gi|168749491|ref|ZP_02774513.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4113] gi|195937622|ref|ZP_03083004.1| type I restriction modification enzyme M subunit [Escherichia coli O157:H7 str. EC4024] gi|261226706|ref|ZP_05940987.1| putative restriction modification enzyme M subunit (methylase) [Escherichia coli O157:H7 str. FRIK2000] gi|261256909|ref|ZP_05949442.1| putative restriction modification enzyme M subunit (methylase) [Escherichia coli O157:H7 str. FRIK966] gi|188016186|gb|EDU54308.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4113] gi|320190534|gb|EFW65184.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Escherichia coli O157:H7 str. EC1212] gi|320638730|gb|EFX08388.1| Type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. G5101] gi|320649760|gb|EFX18284.1| Type I restriction-modification system, M subunit [Escherichia coli O157:H- str. H 2687] gi|320654810|gb|EFX22779.1| Type I restriction-modification system, M subunit [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660662|gb|EFX28123.1| Type I restriction-modification system, M subunit [Escherichia coli O55:H7 str. USDA 5905] gi|326346809|gb|EGD70543.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Escherichia coli O157:H7 str. 1044] Length = 489 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K L + ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440 >gi|297192313|ref|ZP_06909711.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|197719705|gb|EDY63613.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 519 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 97/536 (18%), Positives = 171/536 (31%), Gaps = 68/536 (12%) Query: 15 IWKNAEDLWGD-FKHTDFGKVILPFTLLRRLEC-------ALEPTRSAVREKYLAFGGSN 66 +W L D +++ + + L+ + + + G Sbjct: 4 LWNYCNVLRDDGVSASNYLEQLSLLVFLKMADETEQLNAHRPSADHEHMLPTAPEWQGRG 63 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 + + G L LG T N + ++ F+ Sbjct: 64 WPE--LIDLEGDPLEEAYSKLLIDLG-RRTDQNDHTTLSLI------------FNRARNH 108 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 +E L ++ + E ++ D YE LI R S+ GA + TPR ++ Sbjct: 109 IENPTHLRRLIVDLIDKEKWRNSRSDIN-GAAYEALIARSASDTKAGAGQYFTPRALIES 167 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----- 241 + P T+ DP CGTGGFL A ++ L Sbjct: 168 IVRCM----------RPTPYDTITDPACGTGGFLIAAYEYITREYGDDLPDEDLHRLRTE 217 Query: 242 -PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 G E+ P T + L+ L I G L+K + L+NPP Sbjct: 218 SIWGHEIVPATARLAAMNCLLHSLGD---PTGEPIIDVGDALAKP--PERHASLVLANPP 272 Query: 301 FGKKWE-----KDKDAVEKEHKNGELGR--FGPGLPKISDGSMLFLMHLANKLELPPNGG 353 FG+K K+ +A + N R F G ++ + FL H+ +L Sbjct: 273 FGRKSGINVSGKEAEAEADDRDNVTYNRPDFWVGEQTTTNKQLNFLQHIGTQLTDK---- 328 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412 GRAA+++ L+ G AGS +RR LL + ++ LP ++F+ + ++ Sbjct: 329 GRAAVIVPDGVLYEGGAGSVGDLVRRELLTGYNLHTMLRLPENIFYAGGVKAHVLFFEAV 388 Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS--------RENG 462 + ++ + DL T R K+ + + R+ Sbjct: 389 PGHRADDDPPHTTYVWTYDLRTDSR-FTLKKNPMKPEHLADFEKQAFDPSDPDRKHRKES 447 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 R ++ L R+S D R ++ +S +I Sbjct: 448 DRFRRHAAAELLAQKQVNLDIARLSPEASAAKEPTASIDALTRYVAGDLRSALSEI 503 >gi|302877623|ref|YP_003846187.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella capsiferriformans ES-2] gi|302580412|gb|ADL54423.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella capsiferriformans ES-2] Length = 491 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 83/491 (16%), Positives = 159/491 (32%), Gaps = 87/491 (17%) Query: 10 SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61 S+++ I + + D + L L+ + E +++ YL+ Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWELLQDNYLS 55 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119 ++ N + L + + + + +A Sbjct: 56 PLPEAYRWRNWAA-------NPEGMTGEALKQFLDNEMFPALQQLEARGGDQRAYVIRSV 108 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F ++ L+ ++ + ++YE L+R + + A +F T Sbjct: 109 FEGAYNYMKSGQLIRQVVNKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYT 166 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKI 236 PR V + +P + + DP CGTGGFL+ ++ H+ + Sbjct: 167 PRAVTEFMVRM----------TNPRLGEKVMDPACGTGGFLSCSIEHIRRQDVKTVDDEA 216 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293 G E +P H +C M++ ++ NI+ +TL++ +R Sbjct: 217 ALQASIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWTPKERVD 270 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPFG ++G F + + + LFL+ + L+ G Sbjct: 271 VVVTNPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLK----AG 314 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 GRAA+VL LF ++ I+ LLE + IV LP +F T I T L S Sbjct: 315 GRAALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSK 371 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQI----------LDIYVSREN 461 + + G K + + D + R Sbjct: 372 GAPTQHI---------WFYEHPYPAGVKSYNKTKPMKIEEFDVEAAWWGVESDGFSHRVE 422 Query: 462 GKFSRMLDYRT 472 + + + Sbjct: 423 NEQAWKVSLDD 433 >gi|194435169|ref|ZP_03067401.1| type I restriction-modification system, M subunit [Shigella dysenteriae 1012] gi|194416587|gb|EDX32724.1| type I restriction-modification system, M subunit [Shigella dysenteriae 1012] gi|320179361|gb|EFW54319.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Shigella boydii ATCC 9905] Length = 493 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444 >gi|330879393|gb|EGH13542.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 489 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 92/494 (18%), Positives = 167/494 (33%), Gaps = 81/494 (16%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S+++ I + + D G+++ L+ + E + + Y + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-ELEWELMDDSYRSPIPD 59 Query: 66 NIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSST 123 + ++ G + ++ + L NL Y + S +++ F Sbjct: 60 SCRWRTWAADPEGMTGEALKDFIDNNLFPQ--LQNLHEYSNTPSAYVVRSV-----FKDA 112 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ LL ++ N+YE L+R + + A +F TPR V Sbjct: 113 YNYMKSGQLLRQVINKVQEGVDFNKAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPV 170 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240 ++ P + + DP CGTGGFLT A+ H + + Sbjct: 171 TEFMVRMV----------DPKLDEKVMDPACGTGGFLTCAIEHKRSRYVKTAEDERTLQA 220 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLS 297 G E +P H + M++ +E I+ +TLSK +R H ++ Sbjct: 221 SIFGVEKKPLPHLLATTNMILHGIEV------PSQIKHDNTLSKPLISWGPSERVHCIVA 274 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG ++G F + + + LFL+ + + L+ GGRAA Sbjct: 275 NPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMHLLKD----GGRAA 318 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 +VL LF S I+ LL + IV LP +F + T I T L + Sbjct: 319 VVLPDGFLFGDGIKS---RIKEKLLTECNLHTIVRLPKGVFNPY-TGIKTNLLFFTKGTP 374 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQIL----------DIYVSRENGKF 464 ++ + G K + + D + +R +F Sbjct: 375 TKQ---------VWFYEHQYPAGVKNYSKTRPMRIEEFAVEEVWWGSEDDGFAARVENEF 425 Query: 465 SRMLDYRTFGYRRI 478 + + R Sbjct: 426 AWKVGVGELQARNW 439 >gi|218698187|ref|YP_002405854.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli 55989] gi|218703040|ref|YP_002410669.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli IAI39] gi|300815958|ref|ZP_07096181.1| N-6 DNA Methylase [Escherichia coli MS 107-1] gi|218354919|emb|CAV02127.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli 55989] gi|218373026|emb|CAR20915.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia coli IAI39] gi|281603674|gb|ADA76658.1| putative restriction modification enzyme M subunit [Shigella flexneri 2002017] gi|300531165|gb|EFK52227.1| N-6 DNA Methylase [Escherichia coli MS 107-1] gi|324005095|gb|EGB74314.1| N-6 DNA Methylase [Escherichia coli MS 57-2] Length = 501 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 45 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 452 >gi|197121942|ref|YP_002133893.1| N-6 DNA methylase [Anaeromyxobacter sp. K] gi|196171791|gb|ACG72764.1| N-6 DNA methylase [Anaeromyxobacter sp. K] Length = 486 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 91/470 (19%), Positives = 162/470 (34%), Gaps = 77/470 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95 L+ L+ LE R+ V E +D K +S + + + Sbjct: 32 LLFLKYLDE-LEQERATVAELEGKRYSYILD-----KPYRWSEWAAPKDRDGKIDHNKAK 85 Query: 96 TRNNLES--------YIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSG 142 T ++L Y+ F A + F ++ L +I Sbjct: 86 TGDDLRDFVNLKLFPYLHGFKQKASGPNTVEYKIGEIFGEIRNKIGSGYNLREIIDQIDE 145 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + +S +YE I+R G ++ TPR ++ ++ + Sbjct: 146 LRFR-SQTEKHELSMLYEEKIKRMG-NAGRNGGEYYTPRPLIRAMVQVV----------A 193 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAG 258 P + +YDP CG+ GFL +A +++ K G+E + + + + Sbjct: 194 PKVGERIYDPACGSAGFLCEAFDYLKGKPGLTTKDLKTLQEKTFFGKEKKSLAYVIGIMN 253 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + NI +TL++ D+ R L+NPPFG K K+ Sbjct: 254 MILHGIE-------APNILHTNTLAENLADIQEKDRVDVILANPPFGGKERKEVQQNFAI 306 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + + + LFL H L+ GGRA IV+ ++ L S Sbjct: 307 --------------RSGETAFLFLQHFIKMLK----AGGRAGIVIKNTFLSGNDNAS--V 346 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ LLE + ++ P F + T + + QL + R Sbjct: 347 GLRKLLLETCNLHTVLDCPAGTFQGAGVKTVVLFFEKGAPTRKIWFYQL-------DAGR 399 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR--TFGYRRIKVLRP 483 N G K +NDD L + ++ S +LD + + V P Sbjct: 400 NLG-KTNPLNDDDLVDFLRLEKTKAESAKSWVLDTKTLDKSTFDLTVRNP 448 >gi|110808125|ref|YP_691645.1| putative restriction modification enzyme M subunit [Shigella flexneri 5 str. 8401] gi|110617673|gb|ABF06340.1| putative restriction modification enzyme M subunit [Shigella flexneri 5 str. 8401] Length = 496 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 40 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 94 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 95 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 153 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 154 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 201 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 202 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 255 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 256 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 306 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 307 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 356 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 357 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 410 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 411 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 447 >gi|191170740|ref|ZP_03032292.1| type I restriction-modification system, M subunit [Escherichia coli F11] gi|190908964|gb|EDV68551.1| type I restriction-modification system, M subunit [Escherichia coli F11] Length = 493 Score = 183 bits (465), Expect = 9e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444 >gi|328542330|ref|YP_004302439.1| Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) [polymorphum gilvum SL003B-26A1] gi|326412077|gb|ADZ69140.1| Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) [Polymorphum gilvum SL003B-26A1] Length = 512 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 72/463 (15%), Positives = 157/463 (33%), Gaps = 79/463 (17%) Query: 9 ASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECA--LEPTRSAVR---- 56 + + + IW A L + + ++RL+ +E +S Sbjct: 8 SQIDS-IWNDFWAGGVANPL-SVMEQMTY------LLFIKRLDDLHTVEERKSQTLKIPM 59 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 E+ + G + + + F N + + + L + + + + Sbjct: 60 ERRIFPEGRDDKGRPYDDLRWSRFKNFEPREMMDVVDEHVFPFLRA-LNGSQSSYGKLMR 118 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 D LL K+ + I + ++YE+++ + + Sbjct: 119 DARLG-----FSNPALLAKVVEKLDRIPME----DRDTKGDVYEYMLAKIA--SAGQNGQ 167 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233 F TPR ++ L + +P + DP GT GFL A ++ + Sbjct: 168 FRTPRHIIRLMVEM----------TAPKPTDAICDPAAGTCGFLVAAGEYLREKHPELMR 217 Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 K + HG + + + M + +E + N+ +L++D Sbjct: 218 DPALRKHFHEGLFHGFDFDTTMLRIGAMNMTLHGVE-------NPNVTYRDSLAEDHAED 270 Query: 290 K-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + L+NPPF + + A + + + K +LF+ L+ Sbjct: 271 AGAYSLVLANPPFAGSLDYEATAKDLQ-----------KIVKTRKTELLFIALFLRLLKT 319 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GGRAA+++ LF + +IRR L+E+ ++A++ LP+ +F ++T + Sbjct: 320 ----GGRAAVIVPDGVLF--GSSGAHKDIRRMLVEDHKLDAVIKLPSGVFRPYAGVSTAI 373 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + + V + + KR + +++ Sbjct: 374 LLFTKT-GVGGTENVWFYDVAADGL---SLDDKRAELLPPEKQ 412 >gi|297528756|ref|YP_003670031.1| N-6 DNA methylase [Geobacillus sp. C56-T3] gi|297252008|gb|ADI25454.1| N-6 DNA methylase [Geobacillus sp. C56-T3] Length = 484 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 72/364 (19%), Positives = 138/364 (37%), Gaps = 53/364 (14%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + K GI+ P ++YE+L+ + + F TPR ++H+ L+ Sbjct: 123 LVKIVDGIDRIP-MKDRDTKGDLYEYLLSKIATAG--TNGQFRTPRHIIHMMVELM---- 175 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELE 248 P + DP G+ GFL A ++ S + + +G +++ Sbjct: 176 ------KPTPEDIIVDPAAGSAGFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMD 229 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 + M++ +E + NI+ +LS+ ++ L+NPPF K D Sbjct: 230 RTMLRIGAMNMMLHGIE-------NPNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLD 280 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 DAV + + K +LFL L+ GGR A ++ LF Sbjct: 281 YDAVSNDLLK---------VVKTKKTELLFLALFLRILKT----GGRCACIVPDGVLF-- 325 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINA 427 + +IR+ ++EN +EAI+++P+ +F ++T + I + V + Sbjct: 326 GSSKAHKDIRKEIVENHKLEAIISMPSGVFKPYAGVSTAIMIFTKT-GVGGTDHVWFYDM 384 Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 + KR I ++ I++ + +RE K + + F + V Sbjct: 385 KADGY---SLDDKRTPIEENDIPDIIERFHNREAEKERKRTEQSFF----VPVEEIREND 437 Query: 488 FILD 491 + L Sbjct: 438 YDLS 441 >gi|15804921|ref|NP_290963.1| putative restriction modification enzyme M subunit (methylase) [Escherichia coli O157:H7 EDL933] gi|15834561|ref|NP_313334.1| type I restriction modification enzyme M subunit [Escherichia coli O157:H7 str. Sakai] gi|187775912|ref|ZP_02798948.2| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4196] gi|189010373|ref|ZP_02806644.2| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4076] gi|189402076|ref|ZP_02779925.2| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4401] gi|189402859|ref|ZP_02791636.2| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4486] gi|189403850|ref|ZP_02785602.2| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4501] gi|189404614|ref|ZP_02809998.2| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC869] gi|189405571|ref|ZP_02822927.2| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC508] gi|208808458|ref|ZP_03250795.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4206] gi|208811917|ref|ZP_03253246.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4045] gi|208821806|ref|ZP_03262126.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4042] gi|209398363|ref|YP_002273871.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4115] gi|217324963|ref|ZP_03441047.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. TW14588] gi|254796346|ref|YP_003081183.1| putative restriction modification enzyme M subunit (methylase) [Escherichia coli O157:H7 str. TW14359] gi|291285728|ref|YP_003502546.1| Type I restriction-modification system, M subunit [Escherichia coli O55:H7 str. CB9615] gi|12519367|gb|AAG59530.1|AE005666_2 putative restriction modification enzyme M subunit (methylase) [Escherichia coli O157:H7 str. EDL933] gi|13364785|dbj|BAB38730.1| type I restriction modification enzyme M subunit [Escherichia coli O157:H7 str. Sakai] gi|187770320|gb|EDU34164.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4196] gi|189000682|gb|EDU69668.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4076] gi|189357931|gb|EDU76350.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4401] gi|189364319|gb|EDU82738.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4486] gi|189368976|gb|EDU87392.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4501] gi|189374878|gb|EDU93294.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC869] gi|189379424|gb|EDU97840.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC508] gi|208728259|gb|EDZ77860.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4206] gi|208733194|gb|EDZ81881.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4045] gi|208741929|gb|EDZ89611.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4042] gi|209159763|gb|ACI37196.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. EC4115] gi|217321184|gb|EEC29608.1| type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. TW14588] gi|254595746|gb|ACT75107.1| putative restriction modification enzyme M subunit (methylase) [Escherichia coli O157:H7 str. TW14359] gi|290765601|gb|ADD59562.1| Type I restriction-modification system, M subunit [Escherichia coli O55:H7 str. CB9615] gi|326345337|gb|EGD69080.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Escherichia coli O157:H7 str. 1125] Length = 493 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K L + ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 444 >gi|300992648|ref|ZP_07179962.1| N-6 DNA Methylase [Escherichia coli MS 200-1] gi|52420940|emb|CAH55819.1| putative restriction modification enzyme M subunit (methylase) [Escherichia coli] gi|300305269|gb|EFJ59789.1| N-6 DNA Methylase [Escherichia coli MS 200-1] gi|324014075|gb|EGB83294.1| N-6 DNA Methylase [Escherichia coli MS 60-1] Length = 501 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 45 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 206 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 416 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 452 >gi|320665589|gb|EFX32635.1| Type I restriction-modification system, M subunit [Escherichia coli O157:H7 str. LSU-61] Length = 489 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E + + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPLPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K L + ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440 >gi|325498693|gb|EGC96552.1| type I restriction-modification system, M subunit [Escherichia fergusonii ECD227] Length = 493 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 37 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 92 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 199 GFLACAFDHVKNKYVKSIADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444 >gi|333011301|gb|EGK30715.1| hypothetical protein SFK272_0256 [Shigella flexneri K-272] gi|333012197|gb|EGK31579.1| hypothetical protein SFK227_5291 [Shigella flexneri K-227] Length = 489 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E I + + + SL + + Sbjct: 33 LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + Sbjct: 88 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + HG E + H + ML+ +E Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T L + + + ++ + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + +G SR+ + + ++ + + +F LD Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDLIARNFNLD 440 >gi|153824557|ref|ZP_01977224.1| type I restriction-modification system, M subunit [Vibrio cholerae MZO-2] gi|149741775|gb|EDM55804.1| type I restriction-modification system, M subunit [Vibrio cholerae MZO-2] Length = 496 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 96/496 (19%), Positives = 178/496 (35%), Gaps = 58/496 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L I + + + L + + Sbjct: 33 LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ D+ + + Sbjct: 88 PKLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V L P + + DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + + HG E + H +C+ M++ +E Sbjct: 195 GFLACAFDHVKENYVTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K + +NPPFG ++D +EK R + +D Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L+ GRA +VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLDK----NGRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + ++ +Q Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTNPMKFEEFQQ 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + ++ + + +F LD + E + + Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQGEVVSHDPEELLAN 460 Query: 512 QSFWLDILKPMMQQIY 527 +K + Q+ Sbjct: 461 YQQQQQDIKALRDQLK 476 >gi|239828718|ref|YP_002951341.1| N-6 DNA methylase [Geobacillus sp. WCH70] gi|239809011|gb|ACS26075.1| N-6 DNA methylase [Geobacillus sp. WCH70] Length = 629 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 92/507 (18%), Positives = 178/507 (35%), Gaps = 96/507 (18%) Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79 + L G+ + ++ ++LP L+ L + + ++ + Sbjct: 12 DLLRGETETVNYKLILLPVYSLKFL-------------EEKNLIPDEMRIKEILN----- 53 Query: 80 FYNTSEYSLSTLGSTNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136 +N + L+ Y+ K ++ F + L+++ Sbjct: 54 ------------HESNIADQLQRSFQYVEDNFHALKGVYTIF-----PENVVSNRTLFQL 96 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + L + E L+ + +P+ + L LL Sbjct: 97 LLKINAMTLSVKEWAELA-----EELLYHSYEWEGVRGGENYSPKSINQLGIELL----- 146 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 + T YD T G GG L A+ + K +GQE++ + A+ Sbjct: 147 ------NPISGTFYDGTAGFGGTLVSALEYSKQNNGELK------LYGQEIDHTSWALAK 194 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAV 312 +L+ L + QG L F K+F++ + + P+ + Sbjct: 195 LNLLLH-------DKLDAELIQGDALLNPAFIDGDRLKKFNFIMMDFPW-----VELRNH 242 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + K + RF G+P F+MH LE G+A +V+ LF A Sbjct: 243 YETLKQDKYNRFIYGIPPRRSADFAFIMHTLASLESD----GKAVLVVPGRTLF---ASG 295 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 E IR+ L+ D+IEA++ALP L+ T I T L IL+ K+ +R+G++ INA + + Sbjct: 296 MEQSIRQNLIAADVIEAVIALPAGLYKHTGIQTNLLILNKNKSLDRKGRILFINAENEFQ 355 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKF------SRMLDYRTFGYRRIKVLRPLRM 486 + + K ++ D +I+ Y + + S ++ Y++ + + Sbjct: 356 TKQRYLK---VLTKDNIDKIISTYRNGLEIEQFSKFVSSNEIEEANLFYKKYLTEKVIDT 412 Query: 487 SF----ILDKTGLARLEADITWRKLSP 509 F K +KL+ Sbjct: 413 DFFGKVQFVKESKEYSLNIYPLKKLTE 439 >gi|4210349|emb|CAA10699.1| HsdM protein [Escherichia coli] Length = 325 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 117/310 (37%), Gaps = 50/310 (16%) Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + G ++ V + +GQEL T+ + + IR L ++ Sbjct: 1 SAGMFVQSVKFVESH---QGKSRDIALYGQELTATTYKLAKMNLAIRGLSANLGE----- 52 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDG 334 + T D + Y L+NPPF E + + RF G +P + Sbjct: 53 -RPADTFFSDQHPDLKADYILANPPFNL------KDWRNEAELTKDPRFAGYRMPPTGNA 105 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + +++H+ +KL + G A VL++ + + SGE EIR ++ENDLI+ ++ALP Sbjct: 106 NYGWILHMLSKL----SANGTAGFVLANGSMSSN--TSGEGEIRAQMIENDLIDCMIALP 159 Query: 395 TDLFFRTNIATYLWILSNRKTEER-------RGKVQLINATDLWTSIRNEGKKRRIINDD 447 LF+ T I LW ++ K + +G+ I+A +L T I K + + Sbjct: 160 GQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRTTK---ELTAE 216 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 I D Y + R L + L + E + K+ Sbjct: 217 DIATIADTYHA-----------------WRSTPEE-LAARIARGDSKLEKYEDQAGFCKV 258 Query: 508 SPLHQSFWLD 517 + L D Sbjct: 259 ATLQDIKDND 268 >gi|331266253|ref|YP_004325883.1| type I restriction-modification system, M subunit, putative [Streptococcus oralis Uo5] gi|326682925|emb|CBZ00542.1| type I restriction-modification system, M subunit, putative [Streptococcus oralis Uo5] Length = 482 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 81/509 (15%), Positives = 169/509 (33%), Gaps = 70/509 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ ++L I + + +F N + T Sbjct: 20 LLFMKDLDSV--ELGRESDAEFLGISYEGIFPKDKPEYRWSTFKNIGDAQEVYRLMTQEI 77 Query: 98 NNLESYIAS------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF----SGIELHP 147 + FS + + +T+ ++ I F S I+ Sbjct: 78 FPFIKNLKGDTDDTAFSRYMREAIFQINKPATLQKV------ISILDEFPTRGSDIDFDS 131 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 DT + +IYE+L+ + + F TPR ++ + L+ + Sbjct: 132 DTQGVNDIGDIYEYLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS------- 182 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGML 260 DP G+ GFL A ++ + + HG + + + M+ Sbjct: 183 ---DPAMGSAGFLVSASRYLKRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMM 239 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + +E + I +LS+D ++ L+NPPF + D + + Sbjct: 240 LHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTSNDL------ 286 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 K +LFL L+ GGRAA+++ LF + IR+ Sbjct: 287 -----LATVKTKKTELLFLALFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQE 335 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 ++EN ++A++++P+ +F ++T + I + KV + + + Sbjct: 336 IVENHKLDAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDD 391 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 KR+ I+D+ I + +N + D F + V + L +E Sbjct: 392 KRQPISDNDIPDITQRFHQLDNEAERKRTDQSFF----VPVDEIKDNDYDLSINKYKEIE 447 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + + + + D+ K + + Sbjct: 448 YERVEYEPTEVILKKINDLEKEIQAGLAE 476 >gi|198282372|ref|YP_002218693.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246893|gb|ACH82486.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 484 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 91/505 (18%), Positives = 176/505 (34%), Gaps = 71/505 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLST 90 L+ L+ LE R A+ + + I ++F K A + S Sbjct: 32 LLFLKYLDA-LEQDR-AMEAELEGRPYTFILEDAFRWEHWAAPKTADGRMDHHKAMSGDD 89 Query: 91 LGSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIEL 145 L L Y++ F A I FS +++ L +I + G+ Sbjct: 90 LR-DFVNIRLFPYLSGFKRRATGSNTIEYKIGEIFSEIKNKIQSGYNLREIVEIIDGLRF 148 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 +S++YE I+ G ++ TPR ++ ++ +P + Sbjct: 149 R-SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAIVQVV----------APKV 196 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YD G+ GFL +A +++ + +G+E + + + + M++ Sbjct: 197 GEKIYDGAVGSAGFLCEAFDYLKAQPGLTTSDMQTLQERTFYGKEKKSLAYVIAIMNMIL 256 Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ++ + NI +TL++ D+ R L+NPPFG K K+ Sbjct: 257 HGID-------APNIVHTNTLAENLMDIQPKDRVDVVLANPPFGGKERKEVQQNFPI--- 306 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 K + + LFL H L+ GGR +V+ ++ L N S +R Sbjct: 307 -----------KTGETAFLFLQHFIRMLK----AGGRGGVVIKNTFLSNTDNAS--VSLR 349 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 + LLE+ + ++ LP F + T + + QL RN G Sbjct: 350 KLLLEDCNLHTVLDLPGGTFQGAGVKTVVLFFDKGAPTRKVWYYQL-------NPGRNMG 402 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 K +ND+ + + + ++ + S +D R + D+ L Sbjct: 403 -KTNPLNDNDLAEFVALQKTKADSPQSWTVDVSGIDTR--TYDLSAKNPNGGDEKVLRSP 459 Query: 499 EADITWRKLSPLHQSFWLDILKPMM 523 E + + L ++ ++ Sbjct: 460 EEILDEIAALDAESAEVLASIRGLL 484 >gi|297538978|ref|YP_003674747.1| adenine-specific DNA-methyltransferase [Methylotenera sp. 301] gi|297258325|gb|ADI30170.1| Site-specific DNA-methyltransferase (adenine-specific) [Methylotenera sp. 301] Length = 484 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 84/455 (18%), Positives = 159/455 (34%), Gaps = 79/455 (17%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLSTL 91 L+ L+ LE T+ A+ + + I ++ K F + + + L Sbjct: 33 LFLKYLDA-LEQTK-AMEAELEGKAYNFIVDAAYRWPTWAAPKTTDGKFDHNNALTGDDL 90 Query: 92 GSTNTRNNLESYIASFSD----------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 L Y+ F IF + + +++ L ++ + Sbjct: 91 K-DFVNLKLFPYLKGFKQRATGPNTIEYKIGEIFGEIN-----NKIQSGYNLREVIERID 144 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + +S++YE I+ G ++ TPR ++ + Sbjct: 145 ELSF-NTQAEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMIQV----------T 192 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVA 257 +P + T+YD G+ GFL +A +++ S +G+E + + + + Sbjct: 193 NPKIGETIYDGAVGSAGFLCEAFDYLRSQPNLSTSDLATLQTSTFYGKEKKSLAYVIAIM 252 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 M++ +E + NI +TL++ D+ R+ L+NPPFG K + Sbjct: 253 NMILHGIE-------APNIIHTNTLAENISDIQEKDRYDIILANPPFGGKERAEVQQNFP 305 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 K + + LFL H L GGRAA+V+ ++ L N S Sbjct: 306 I--------------KTGETAFLFLQHFIKSLR----AGGRAAVVIKNTFLSNTDNAS-- 345 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +R+ LLE+ + ++ P F + T + QL Sbjct: 346 VSLRKLLLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAPTRNTWFYQL-------DPG 398 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 RN G K +NDD + L + + + S + Sbjct: 399 RNMG-KTNPLNDDDLAEFLTLQKTFADSPKSWNVS 432 >gi|42528246|ref|NP_973344.1| type I restriction-modification system, M subunit [Treponema denticola ATCC 35405] gi|41819516|gb|AAS13263.1| type I restriction-modification system, M subunit [Treponema denticola ATCC 35405] gi|325474564|gb|EGC77750.1| type I restriction-modification system [Treponema denticola F0402] Length = 480 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 76/438 (17%), Positives = 142/438 (32%), Gaps = 84/438 (19%) Query: 1 MTEFTGSA----ASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRS 53 M + + +L +W A+ L F I+ T L L Sbjct: 1 MAKKEATQAKPEQALTKKVWNMADVL-----AAAGIGFTDYIIQLTYLLFL--------- 46 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 ++ + G + + + L Y + Sbjct: 47 --------------KMDFEKESYGLGSALPDGSKWKDIVQLDGPDQLAKY-----EKILE 87 Query: 114 IFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + + D F+ ++ K LL K+ ++ + IYE ++ + G Sbjct: 88 VLQAADGLIGAIFTEAQNKIAKPALLKKLIGMIDEENWF--SMDGDLKGAIYESILEKNG 145 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + GA + TPR +++ ++ P + T+ DP CGTGGFL A +++ Sbjct: 146 QDKKSGAGQYFTPRPLINAMVDVV----------QPKITETVADPACGTGGFLLSAYDYM 195 Query: 228 ADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + G ++ P + + + + D I+ +L Sbjct: 196 RKQSDEQSKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGVDTTP-----IKCEDSLEH 250 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + L+NPPFG + D + S+ + FL H+ Sbjct: 251 E--PEHLVDVILANPPFGARPAGSVDISTMRSDL---------IVTTSNNQLNFLQHMMV 299 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ GGRA IVL + LF AG +R+ LL++ + I+ LPT +F+ + Sbjct: 300 MLKD----GGRAGIVLPDNVLFADGAGEI---LRKKLLKDFNLHTILRLPTGIFYANGVK 352 Query: 405 TYLWILSNRKTEERRGKV 422 + + Sbjct: 353 ANVLFFEKGSPTQETWYY 370 >gi|167837438|ref|ZP_02464321.1| type I restriction modification system, methyltransferase subunit [Burkholderia thailandensis MSMB43] Length = 494 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 109/550 (19%), Positives = 189/550 (34%), Gaps = 91/550 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGD---FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M+ T S+ N W A L D + + + I L+ + S Sbjct: 1 MSNAT---QSIVNKAWSFAHVLRDDGLSYMA--YTEQITFLLFLKMAHELTQSPYSR--- 52 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 +D ES V G + L LG L + + Sbjct: 53 --PPIVPKGMDWESLVAKDGDELEVHYRHVLDELGRQ--PGMLGEIFKKARPDIQN---- 104 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 +T+ +L I G ++ V +IYE L+ + +E +GA + Sbjct: 105 ---PATLKKL--------IVDLIGGENWM--SLQADVKGDIYEGLLSKSAAESPKGAGQY 151 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----- 232 TPR+++ P T+ DP CGTGGFL A+++V Sbjct: 152 FTPRELIKAIVD----------AMQPAPSDTVCDPACGTGGFLMQAIDYVNRHYGADLDP 201 Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGK 290 K G EL P T + + + + + + I+ G +L+ + Sbjct: 202 DQKKHLRNGFVQGGELVPATARLAIMNLYLHGV-----QSQDCPIRSGVDSLAS--QPSE 254 Query: 291 RFHYCLSNPPFGKKWEKD--KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 RF L+NPPFGKK + E E + R + + F+ H+ + L++ Sbjct: 255 RFSMVLTNPPFGKKSSISVVNEEGELEKEEQAYERTDFWTT-TKNKQLNFVQHIKSLLKI 313 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GRAA+VL + LF G A GE+ IR+ LL+ + ++ LPT +F+ + + Sbjct: 314 H----GRAAVVLPDNVLFEGGA--GET-IRKNLLQQFDVHTLLRLPTGIFYAQGVKANVL 366 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYV--SRENGKF 464 + +E ++ N K + + ++ + +R K Sbjct: 367 FFDAKPAQEAPW----TKGLWVYDLRTNMHFTLKTNPLKRANLDEFVECFNAENRHERKA 422 Query: 465 SR----------MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + DY R L + ++ D+ LE + + L Q Sbjct: 423 TWGEAQPDGRWRYFDYDELVKRDKT---NLDIFWLKDED----LEDSENLPEPAVLAQEI 475 Query: 515 WLDILKPMMQ 524 D+ + Q Sbjct: 476 ADDLAAALEQ 485 >gi|83943083|ref|ZP_00955543.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp. EE-36] gi|83846091|gb|EAP83968.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp. EE-36] Length = 467 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 86/461 (18%), Positives = 154/461 (33%), Gaps = 86/461 (18%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ IW L GD + + + L+ Sbjct: 2 KNENVVQRIWNLCHILRGDGISYHQYVSELTYLLFLK----------------------- 38 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-----SFSDNAKAIFEDFD- 119 + G +++ + L + L Y S I Sbjct: 39 ------IAQENGVERLLPAKFRWNDLVNHPEDGLLGFYQEMLTHLGTSAE-SEIIRAIYA 91 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F +T+ + L + + IE H + D IYE LI + +V GA + T Sbjct: 92 FPTTV--FSHSENLRAVIDGITEIEWH--DLSDDRFGQIYEGLIEKSSQDVRSGAGQYFT 147 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR +V+ ++ P + + DP G+GGFL A + S Sbjct: 148 PRPLVNSMVKVM----------RPRLGEMIQDPAAGSGGFLIAADQFIRSGNSDSAYSKN 197 Query: 240 LVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + G E+E T +C+ + L+++ + G L+ D + + L+N Sbjct: 198 PPKYQGAEIEKNTRRICLMNTFLNGLDAE--------VFYGDALTDDGAGFQSANLVLAN 249 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAA 357 PPFG +K G + +P ++ + FL H+ L GGRAA Sbjct: 250 PPFG-------------NKAGSRRKLRADIPYPNANKQLAFLQHIYLCL----ETGGRAA 292 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL + LF G +RR L+E+ + ++ LP +F + T + S E+ Sbjct: 293 VVLPDNALFEEGVG---KLVRRDLMESCNLHTVLRLPKGIFSSAGVKTNVLFFSRD-GEK 348 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 V + ++ G K + + + + Sbjct: 349 STEDVWFYDLRS---NMPTFG-KNNQLKPEHFTEFERCFGE 385 >gi|332076170|gb|EGI86636.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41301] Length = 497 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 99/559 (17%) Query: 5 TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 TG + + +W+ A L + + + ++ L+ Sbjct: 3 TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44 Query: 59 YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111 G D E F + EY ST N + E Y I F N Sbjct: 45 ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99 Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160 K +D FS I + I F ++ D + +IYE Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ + + F TPR ++ + L+ + DP G+ GFL Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207 Query: 221 TDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 A ++ + + HG + + + M++ +E + Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I +LS+D ++ L+NPPF + + + + K Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +LFL L+ GGRAA+++ LF + IR+ ++EN ++A++++ Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 P+ +F ++T + I + KV + + + KR+ I+D+ I Sbjct: 364 PSGVFKPYAGVSTVILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDI 419 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 ++ + E + D F + V + L +E + + + + Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475 Query: 513 SFWLDILKPMMQQIYPYGW 531 D+ K + + Sbjct: 476 KKINDLEKEIQAGLAELEK 494 >gi|11387194|sp|Q47282|T1ME_ECOLX RecName: Full=Type I restriction enzyme EcoEI M protein; Short=M.EcoEI gi|304897|gb|AAD15049.1| EcoE type I restriction modification enzyme M subunit [Escherichia coli] Length = 490 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + T+ E I + + + +L + + Sbjct: 33 LLFLKIFD-----TQEEELELEQDDYQFPIPQRYLWRSWAANSEGITGDALLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ + + + Sbjct: 88 PTLKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV D + +G E + H +C ML+ +E Sbjct: 195 GFLACAFDHVKDNYVKTTEDHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPDGVKNYSKTKPMKFEEFQA 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +D + + + SR + + ++ + + +F LD Sbjct: 404 EIDWWGNEADDFASREENNQA---WKVGIDDIIARNFNLD 440 >gi|332663456|ref|YP_004446244.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] gi|332332270|gb|AEE49371.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] Length = 487 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 87/507 (17%), Positives = 180/507 (35%), Gaps = 74/507 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +RRL+ L+ R I E+ + F NT + + Sbjct: 35 LLFIRRLDE-LQTQREQKANLLKRPIEDPIYHENEYALRWSHFKNTDPEVMYKRFTQADG 93 Query: 98 -----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N+ S A+FS K F RL L ++ + S I++ Sbjct: 94 VFDFLRNVGSRSAAFSKYMKG----ATFMIPTPRL-----LAQVVEMLSNIDMS----DR 140 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++YE+L+ + + F TPR ++ L ++ + DP Sbjct: 141 DTKGDVYEYLLSKIA--SAGQNGQFRTPRHIIRLMVDMVQPTLEDFI----------CDP 188 Query: 213 TCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + GT GFLT A ++ + ++ + + G E +P + +++ +E Sbjct: 189 SAGTCGFLTGAGEYIREHYANELYADGAQEHFQNHMFMGMEFDPTMIRIGAMNLILHGIE 248 Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + ++ LS+ + +R L+NPPF K D++AV+ + Sbjct: 249 -------NPQLRDVDALSEANTDFTERATLVLANPPF--KGSLDREAVDGKILQTVD--- 296 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 +LFL + L+ GGRAA+++ LF + +IR L+E Sbjct: 297 ------SKKTELLFLALILKGLK----LGGRAAVIVPDGVLF--GSSKAHQQIRTELIER 344 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 ++A++++P+ +F ++T + + + + +V + + + KR Sbjct: 345 QRLQAVISMPSGVFKPYAGVSTAILLFTKTNSG-GTDQVWFYD---MQADGFSLDDKRNP 400 Query: 444 INDDQRRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 + I+ + R+ + S ++ + + + + A Sbjct: 401 LPHSDLPDIVQRFQHLEAETQRQRTERSFLVPLQEIRDNKYDLSINRYKEVQYAEKTYAA 460 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQ 524 A I + ++ L+ LK M+ Sbjct: 461 PGAIIAEIEALDRERTVLLNELKGMLA 487 >gi|296122895|ref|YP_003630673.1| Site-specific DNA-methyltransferase (adenine- specific) [Planctomyces limnophilus DSM 3776] gi|296015235|gb|ADG68474.1| Site-specific DNA-methyltransferase (adenine- specific) [Planctomyces limnophilus DSM 3776] Length = 484 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 151/449 (33%), Gaps = 65/449 (14%) Query: 38 FTLLRRLECALEPTR--SAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLG 92 L+ L+ LE + A E KY E++ G Sbjct: 32 LLFLKYLDG-LEQDKADEAALEGKKYTFILDPPYRWEAWAAPKGKDGLIDHNRAQTGDDL 90 Query: 93 STNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ F A I F ++ L +I + + Sbjct: 91 RDFVNEKLFPYLHGFKQKAIGPNTIEYKIGEIFGEIKNKISSGYNLREIIDHIDELRFR- 149 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S++YE I+ G ++ TPR ++ ++ P + Sbjct: 150 SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMIQVV----------KPKIGE 198 Query: 208 TLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 +YD G+ GFL +A ++ K +G+E + + + + M++ Sbjct: 199 RIYDGAVGSAGFLCEAFEYLRAKRGLTTKEAKTLQEKTFYGKEKKSLAYVIAIMNMILHG 258 Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + NI +TL++ D+ R L+NPPFG K K+ Sbjct: 259 IE-------APNIVHTNTLTENLADIQEKDRVDVVLANPPFGGKERKEVQQNFPI----- 306 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + + + LFL H L+ GGR +V+ ++ L N S +R+ Sbjct: 307 ---------RTGETAFLFLQHFIKILK----AGGRGGVVIKNTFLSNTDNAS--VSLRKL 351 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LLE+ + A++ P F + T + + QL RN G K Sbjct: 352 LLESCNLYAVLDCPGGTFQGAGVKTVVLFFEKGAPTRKVWFYQL-------DPGRNLG-K 403 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLD 469 +ND + +++ + + S ++ Sbjct: 404 TNPLNDADLAEFIELQATCADSPKSWSVE 432 >gi|226940929|ref|YP_002796003.1| HsdM [Laribacter hongkongensis HLHK9] gi|226715856|gb|ACO74994.1| HsdM [Laribacter hongkongensis HLHK9] Length = 283 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 15/198 (7%) Query: 108 SDNAKAI----FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 S + I ++AGLLY + + F+ I+LHP +V + M ++E LI Sbjct: 96 SAALQDIRDVLLAGAVLGEQWVTADRAGLLYLVTEKFANIDLHPASVDNASMGLVFEELI 155 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R+F +E A + TPR+V+ L LL DD + ++RTLYDPT GTGG L+ A Sbjct: 156 RKFAEISNETAGEHFTPREVIRLMVNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVA 215 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +A+ ++ GQEL E++A+C A MLI+ + NI G+TLS Sbjct: 216 GEFLAEHNPQARL----TLFGQELNDESYAICKADMLIKGQDV-------GNIVAGNTLS 264 Query: 284 KDLFTGKRFHYCLSNPPF 301 D ++F Y L + P+ Sbjct: 265 DDGHGARKFDYMLCSAPW 282 >gi|15900769|ref|NP_345373.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae TIGR4] gi|15902834|ref|NP_358384.1| type I restriction-modification system M subunit [Streptococcus pneumoniae R6] gi|111656838|ref|ZP_01407685.1| hypothetical protein SpneT_02001902 [Streptococcus pneumoniae TIGR4] gi|116515872|ref|YP_816267.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae D39] gi|148984620|ref|ZP_01817888.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP3-BS71] gi|148988313|ref|ZP_01819760.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP6-BS73] gi|148993698|ref|ZP_01823145.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP9-BS68] gi|148997030|ref|ZP_01824684.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP11-BS70] gi|149002423|ref|ZP_01827357.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP14-BS69] gi|149007169|ref|ZP_01830833.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP18-BS74] gi|149010480|ref|ZP_01831851.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP19-BS75] gi|168484773|ref|ZP_02709718.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC1873-00] gi|168485835|ref|ZP_02710343.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC1087-00] gi|168490319|ref|ZP_02714518.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae SP195] gi|168490977|ref|ZP_02715120.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC0288-04] gi|168493039|ref|ZP_02717182.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC3059-06] gi|168575544|ref|ZP_02721480.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae MLV-016] gi|169832734|ref|YP_001694340.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae Hungary19A-6] gi|182683805|ref|YP_001835552.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae CGSP14] gi|221231662|ref|YP_002510814.1| type I RM modification enzyme [Streptococcus pneumoniae ATCC 700669] gi|225854392|ref|YP_002735904.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae JJA] gi|225856550|ref|YP_002738061.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae P1031] gi|225861221|ref|YP_002742730.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae Taiwan19F-14] gi|237650540|ref|ZP_04524792.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CCRI 1974] gi|237822643|ref|ZP_04598488.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CCRI 1974M2] gi|298229447|ref|ZP_06963128.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254225|ref|ZP_06977811.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503107|ref|YP_003725047.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|303260412|ref|ZP_07346381.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP-BS293] gi|303262769|ref|ZP_07348707.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP14-BS292] gi|303265058|ref|ZP_07350972.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae BS397] gi|303267632|ref|ZP_07353470.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae BS457] gi|303269990|ref|ZP_07355722.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae BS458] gi|14972360|gb|AAK75013.1| putative type I restriction-modification system, M subunit [Streptococcus pneumoniae TIGR4] gi|15458387|gb|AAK99594.1| Type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae R6] gi|116076448|gb|ABJ54168.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae D39] gi|147756730|gb|EDK63770.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP11-BS70] gi|147759360|gb|EDK66352.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP14-BS69] gi|147761207|gb|EDK68174.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP18-BS74] gi|147764961|gb|EDK71890.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP19-BS75] gi|147923011|gb|EDK74126.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP3-BS71] gi|147925994|gb|EDK77068.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP6-BS73] gi|147927778|gb|EDK78801.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP9-BS68] gi|168995236|gb|ACA35848.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae Hungary19A-6] gi|172042062|gb|EDT50108.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC1873-00] gi|182629139|gb|ACB90087.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae CGSP14] gi|183570929|gb|EDT91457.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC1087-00] gi|183571347|gb|EDT91875.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae SP195] gi|183574577|gb|EDT95105.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC0288-04] gi|183577032|gb|EDT97560.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae CDC3059-06] gi|183578644|gb|EDT99172.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae MLV-016] gi|220674122|emb|CAR68641.1| putative type I RM modification enzyme [Streptococcus pneumoniae ATCC 700669] gi|225723691|gb|ACO19544.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae JJA] gi|225726174|gb|ACO22026.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae P1031] gi|225728274|gb|ACO24125.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238702|gb|ADI69833.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|301794017|emb|CBW36415.1| putative type I RM modification enzyme [Streptococcus pneumoniae INV104] gi|301799875|emb|CBW32451.1| putative type I RM modification enzyme [Streptococcus pneumoniae OXC141] gi|301801712|emb|CBW34418.1| putative type I RM modification enzyme [Streptococcus pneumoniae INV200] gi|302636091|gb|EFL66588.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP14-BS292] gi|302638447|gb|EFL68913.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP-BS293] gi|302640481|gb|EFL70896.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae BS458] gi|302642831|gb|EFL73140.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae BS457] gi|302645418|gb|EFL75651.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae BS397] gi|332073216|gb|EGI83695.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17570] Length = 497 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 99/559 (17%) Query: 5 TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 TG + + +W+ A L + + + ++ L+ Sbjct: 3 TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44 Query: 59 YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111 G D E F + EY ST N + E Y I F N Sbjct: 45 ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99 Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160 K +D FS I + I F ++ D + +IYE Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ + + F TPR ++ + L+ + DP G+ GFL Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207 Query: 221 TDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 A ++ + + HG + + + M++ +E + Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I +LS+D ++ L+NPPF + + + + K Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +LFL L+ GGRAA+++ LF + IR+ ++EN ++A++++ Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 P+ +F ++T + I + KV + + + KR+ I+D+ I Sbjct: 364 PSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDI 419 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 ++ + E + D F + V + L +E + + + + Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475 Query: 513 SFWLDILKPMMQQIYPYGW 531 D+ K + + Sbjct: 476 KKINDLEKEIQAGLAELEK 494 >gi|328947988|ref|YP_004365325.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema succinifaciens DSM 2489] gi|328448312|gb|AEB14028.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema succinifaciens DSM 2489] Length = 480 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 92/548 (16%), Positives = 177/548 (32%), Gaps = 90/548 (16%) Query: 1 MTEFTGSA----ASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRS 53 M + + +L +W A+ L F I+ T L L ++ + Sbjct: 1 MAKKERTQAKPEQTLTKKVWNMADVL-----AAAGVGFTDYIIQLTYLLFL--KMDSEKE 53 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + + + V++ G E L TL + + Sbjct: 54 SYG--LGSALPEGSKWKDIVELDGPDQLAKYEKILETLQAKD-----------------G 94 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + F+ ++ K LL K+ ++ + IYE ++ + G + G Sbjct: 95 LIGAI-FTEAQNKISKPALLKKLIGMIDEENWF--SMEGDLKGAIYESILEKNGQDKKSG 151 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A + TPR +++ ++ P + T+ DP CGTGGFL A + + Sbjct: 152 AGQYFTPRPLINAMVDVI----------QPQITETVADPACGTGGFLLAAYDFMRKQSDE 201 Query: 234 H---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + G ++ P + + + + +D I+ +L + Sbjct: 202 QDKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGTDTTP-----IKCEDSLEHE--PEH 254 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 L+NPPFG + D + + S+ + FL H+ L+ Sbjct: 255 LVDVILANPPFGARPAGSVDITTMRNDL---------IVTTSNNQLNFLQHMMLMLKD-- 303 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRA IVL + LF AG ++R+ LL++ + I+ LPT +F+ + + Sbjct: 304 --GGRAGIVLPDNVLFADGAG---EKLRKKLLKDFNLHTILRLPTGIFYANGVKANVLFF 358 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRML 468 + + + + + + Y E+ K + Sbjct: 359 EKGTPTKETWYY-------DYRTGIKHTLATKPLKRSDLDDFVSCYCAGHMEDRKETWSE 411 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + T +R+ V L + DI+W K + L L +Q+ Sbjct: 412 ENPTGRWRKYNVDELLER---------DKTSLDISWIKDKDDLEDVTLKELFSTIQEKGK 462 Query: 529 YGWAESFV 536 Sbjct: 463 NINNAINQ 470 >gi|325678123|ref|ZP_08157755.1| putative type I restriction-modification system, M subunit [Ruminococcus albus 8] gi|324110179|gb|EGC04363.1| putative type I restriction-modification system, M subunit [Ruminococcus albus 8] Length = 542 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 89/548 (16%), Positives = 190/548 (34%), Gaps = 77/548 (14%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 ++ +I L + L + ++ + I + ++T Sbjct: 28 DGNEYK-IITQVFLYKYLNDKFGYEIKKLDKRIASAEKWEIAYSELSEDEREDLFDTMNP 86 Query: 87 SLSTLGSTNTRNNL------ESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYK---- 135 + L + ++L + F I + D ST L++ Sbjct: 87 DIPRLNPEHLISHLWNQQAKGDFDLIFDQTMIDIADKNIDIFSTQTTQNTKIPLFERLTQ 146 Query: 136 --------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180 + + I+E+LI+ + + ++ TP Sbjct: 147 YVTDEAQRAPFARALVDKLVNFSFEETFSEHYDFFAAIFEYLIKDYNTAGGGKYAEYYTP 206 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + + LL+ D L YDP+ GTG L + + + Sbjct: 207 HAIATIMARLLVGDDADLHNIE------CYDPSAGTGTLLMALGHQIGE--------DRC 252 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHY 294 Q++ ++ + +++ L + QG TL S D + + F Y Sbjct: 253 TIFAQDISQRSNKMLKLNLILNGL-----VSSLDHAIQGDTLVAPYHKSDDGQSLRTFDY 307 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLANKLE 347 +SNPPF + ++ + RF G+PK SM F+ H+ N L+ Sbjct: 308 VVSNPPFKMDFSDTREKIAA-----MPARFWAGVPKVPAKKKESMAIYTCFIQHVVNSLK 362 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+ AIV+ + L S E + + L+E+ ++ V++P+++F T + Sbjct: 363 KT----GKGAIVVPTGFL--TAKSSVEGAVLKKLVEDHIVYGAVSMPSNVFANTGTNVSV 416 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 N +T +V LI+A+ L ++ ++R + ++ +I+ + ++E FS Sbjct: 417 LFFDNSRTA---DRVVLIDASKLGEEYKDGNLQKRRLRPEEIEKIITTFRNKEAVDDFSV 473 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMM 523 + Y ++ + ++ L + E + QSF+ + + +M Sbjct: 474 AVTYEEIISKKYSLAAGQYFDVKIEYVELTQEEFEAKMSAFKTELQSFFDEGNALQAEIM 533 Query: 524 QQIYPYGW 531 +Q+ + Sbjct: 534 KQLGKVKY 541 >gi|84499587|ref|ZP_00997875.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597] gi|84392731|gb|EAQ04942.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597] Length = 512 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 77/430 (17%), Positives = 150/430 (34%), Gaps = 71/430 (16%) Query: 35 ILPFTLLRRLECA--LEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 I ++RL+ LE +++ E+ + G++ ++ + F N + Sbjct: 32 ITYLLFIKRLDDLHTLEESKAETLGLEMERRIFPEGNDDKGRAYEDMRWSRFKNFEAREM 91 Query: 89 STLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 + + L S+ + K FSS LL K+ + I + Sbjct: 92 MEVVDEHVFPFLRQLGEEGSSYGKHMKD--ARLGFSS-------PSLLSKVVEMLDQIPM 142 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++YE+++ + + F TPR ++ L L +P Sbjct: 143 D----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIQLMVEL----------TAPTP 186 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAG 258 + DP GT GFL A ++ HG + +P + Sbjct: 187 DDVICDPASGTCGFLVAAGEYLRANHPELFRNEKQRAHFHKDMFHGFDFDPTMLRIGAMN 246 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M++ +E +I +L+++ ++ L+NPPF + D A + + Sbjct: 247 MVLHGVE-------DADISYRDSLAEEHNADAGKYSLILANPPFAGSLDYDSTAKDLQ-- 297 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + K +LF+ L+ GGRAA+V+ LF A EI Sbjct: 298 ---------KIVKTKKTELLFVGLFLRLLKT----GGRAAVVVPDGVLF--GASKAHKEI 342 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 RR L+E+ ++A++ LP+ +F ++T + + + V + + Sbjct: 343 RRMLVEDHKLDAVIKLPSGVFRPYAGVSTAILVFTKT-GVGGTDHVWFYDLQADGI---S 398 Query: 437 EGKKRRIIND 446 KR + Sbjct: 399 LDDKRTPLLP 408 >gi|332201350|gb|EGJ15420.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368] gi|332204889|gb|EGJ18954.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47901] Length = 460 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 71/438 (16%), Positives = 152/438 (34%), Gaps = 62/438 (14%) Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEH 161 +FS + + +T+ + I F ++ D + +IYE+ Sbjct: 70 AFSRYMREAIFQINKPATLQKA------ISILDVFPTRGLDVDFDNDKQSITDIGDIYEY 123 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + + F TPR ++ + L+ + DP G+ GFL Sbjct: 124 LLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLV 171 Query: 222 DAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 A ++ + + HG + + + M++ +E + Sbjct: 172 SASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NP 224 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 I +LS+D ++ L+NPPF + + + + K Sbjct: 225 QISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKKT 273 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL L+ GGRAA+++ LF + IR+ ++EN ++A++++P Sbjct: 274 ELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMP 327 Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 + +F ++T + I + KV + + + KR+ I+D+ I+ Sbjct: 328 SGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDII 383 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + + E + D F + V + L +E + + + + Sbjct: 384 ERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILK 439 Query: 514 FWLDILKPMMQQIYPYGW 531 D+ K + + Sbjct: 440 KINDLEKEIQAGLAELEK 457 >gi|311742871|ref|ZP_07716679.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM 15272] gi|311313551|gb|EFQ83460.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM 15272] Length = 484 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 88/508 (17%), Positives = 169/508 (33%), Gaps = 75/508 (14%) Query: 35 ILPFTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 I +RRL+ L +++ V G F NTS + Sbjct: 32 ITYLLFIRRLDDVQTLAESKARV--TGGEVENPVFLPGQAHLRWGQ-FKNTSPEVMHRTI 88 Query: 93 STNTRNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + + L S +S++ K F + LL K+ I + Sbjct: 89 ADDVFPFLRGLGDSSTYSEHMKD--ARF-------TIPTPALLSKVVDMLDDIPMA---- 135 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++YE+L+ + + F TPR ++ L + +P + Sbjct: 136 DRDTNGDLYEYLLSKIA--SAGVNGQFRTPRHIIDLMVRM----------TAPQPRDEVC 183 Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263 DP CGTGGFL A +V + + + + HG + + + ML+ Sbjct: 184 DPACGTGGFLVAASEYVRETHADALLDANQRQHFHHSMFHGYDFDSTMLRIGSMNMLMHG 243 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 +E S +I+ +LS+ +++ L+NPPF ++ E +L Sbjct: 244 VE-------SPDIRYRDSLSEGAAGDTEKYTLILANPPFAGS-------LDYEATAKDLQ 289 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 R + K + GGRAA+V+ LF + E+RR ++ Sbjct: 290 R----VVKTKKTE----LLFLALFLKLLKPGGRAAVVVPDGVLF--GSSKAHKELRRIMV 339 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 E ++A+V LP+ +F ++T + + + V + + KR Sbjct: 340 EEQKLDAVVKLPSGVFRPYAGVSTAILFFTKTNSG-GTDDVWFYDVRADG---FSLDDKR 395 Query: 442 RIINDDQRRQILDIYVSREN------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 + D +L + + + S ++ + + + D+ Sbjct: 396 NSVEADDLPDVLTRWQNLAEEDDRARTEQSFLVPKADIVAQDYDLSLNRHKEIVHDEIEH 455 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMM 523 I ++ + L LK M+ Sbjct: 456 RAPLEIIADIEILEDEIARGLSELKAML 483 >gi|307127562|ref|YP_003879593.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae 670-6B] gi|306484624|gb|ADM91493.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae 670-6B] gi|332077301|gb|EGI87763.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17545] Length = 497 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 93/559 (16%), Positives = 181/559 (32%), Gaps = 99/559 (17%) Query: 5 TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 TG + + +W+ A L + + + ++ L+ Sbjct: 3 TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44 Query: 59 YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111 G D E F + EY ST N + E Y I F N Sbjct: 45 ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99 Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160 K +D FS I + I F ++ D + +IYE Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ + + F TPR ++ + L+ + DP G+ GFL Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207 Query: 221 TDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 A ++ + + HG + + + M++ +E + Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I +LS+D ++ L+NPPF + + + + K Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +LFL L+ GGRAA+++ LF + IR+ ++EN ++A++++ Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 P+ +F ++T + I + KV + + + KR+ I D+ I Sbjct: 364 PSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPIRDNDIPDI 419 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 ++ + E + D F + V + L +E + + + + Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475 Query: 513 SFWLDILKPMMQQIYPYGW 531 D+ K + + Sbjct: 476 KKINDLEKEIQAGLAELEK 494 >gi|323139525|ref|ZP_08074571.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242] gi|322395204|gb|EFX97759.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242] Length = 717 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 109/558 (19%), Positives = 190/558 (34%), Gaps = 91/558 (16%) Query: 6 GSAASLANFIWKNA------ED-LWGDFKHTDFGKVILPFT----LLRRLECALEPTRSA 54 ++ L + + +A + L GD LP L+ L+ LE R Sbjct: 16 TTSQMLGSLL-NSARKIMRKDKGLNGDLDR-------LPLLTWIMFLKFLDD-LEQQREE 66 Query: 55 -----------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 E + D + SF N E L +Y Sbjct: 67 EAALSGKKFKAAIEAPYRWRDWAADPQGITGDELLSFINAEEA--VRADGQK-GPGLFAY 123 Query: 104 IASFS----DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + S S DN + + F R++ LL I GI + + +Y Sbjct: 124 LRSLSSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIVNKVGGIHFT-SSDELHTLGALY 181 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E ++R + +F TPR VV + P + T+ DP GTGGF Sbjct: 182 ESMLREMRDAAG-DSGEFYTPRAVVRFMVEV----------TDPRLGETVLDPASGTGGF 230 Query: 220 LTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 L +A NH+ K G E + + +C +L+ L+ + I Sbjct: 231 LVEAYNHLEKQVKTVADRKRLQNDTISGCEPKSLPYLLCQMNLLLHGLD-------APQI 283 Query: 277 QQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 G+ L ++ +R L+NPPFG + EK E + ++ Sbjct: 284 DPGNALRFKLSEIGEKERVDVILTNPPFGGEEEKGIQGNFPEDRQ------------TAE 331 Query: 334 GSMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 ++LFL + KL+ P G RAA+V+ L + IR LL + I AI Sbjct: 332 TALLFLQLIMRKLKRQPTLAGRPARAAVVVPHGSLSSPGVA---KRIRETLLGDFNITAI 388 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 V LP ++F T+I + + + + + + + K + + + Sbjct: 389 VRLPHNVFAPYTDIQSNVIFFERGEPTQS---ILYCEPSL---PLGYSLSKTKPLLYEWM 442 Query: 450 RQILDIYVSRENGKFSRMLDYRTF-GYRRIKVLRPLR-MSFILDKTGLARLEADITWRKL 507 + + SR+ S ++ + + P R ++ + D+ L L A + Sbjct: 443 EPLKKLIASRQETDTSWLVRRDDLDENLNLDIKNPRRKLNSLADRGDLETLSAQMRSYAD 502 Query: 508 SPLHQSFWLDILKPMMQQ 525 L + +++Q Sbjct: 503 EADAIKAELAQVTELIRQ 520 >gi|332995832|gb|AEF05887.1| type I restriction-modification system methyltransferase subunit [Alteromonas sp. SN2] Length = 512 Score = 180 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 111/558 (19%), Positives = 190/558 (34%), Gaps = 86/558 (15%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRS-- 53 +A L + + + + GD LP L+ L+ LE R Sbjct: 2 TTAQQLGAIVKSSRQIMRKDKGLNGDLDR-------LPMLTWIMFLKFLDD-LEQMRETE 53 Query: 54 AVRE--KYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR--NNLES 102 AV E + + + + G +F N E + G+ L S Sbjct: 54 AVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAFINNDEA-MRPDGTRGIGLFAYLRS 112 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + + + F R+ LL + +GI + +S +YE + Sbjct: 113 LQGDNGGDRRDVIATV-FKGMQNRMINGYLLRDVVDKINGIHF-NSSEEMHTLSRLYETM 170 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R + +F TPR VV ++ P + ++ DP CGTGGFL + Sbjct: 171 LREMRDAAG-DSGEFYTPRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVE 219 Query: 223 AMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 A H+ ++ G E + + + +L+ LE I Sbjct: 220 AFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-------PRIDPE 272 Query: 280 STLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 ++L L R L+NPPFG E + G LG F + + ++ +M Sbjct: 273 NSLRFPLREMGDKDRVDVILTNPPFG-----------GEEEKGILGNFPEDM-QTAETAM 320 Query: 337 LFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + KL+ P +G GGRAA+V+ + LF+ + I+ LL+N + IV L Sbjct: 321 LFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS---ARIKEELLKNFNLHTIVRL 377 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 P +F T+I + E Q+ R + K + + + Sbjct: 378 PEGVFAPYTDIPANVLFFDRSAPTEDIWFYQIETPEG-----RKKYTKTKPMEYGEFSDC 432 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRR---IKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 L + +R+ + + + L L L K+ Sbjct: 433 LAWWGNRKVTNQAWTIKANDVLKYHDDGKLLDVNLDRKNPYSLEALEHLPPIQLIEKI-Q 491 Query: 510 LHQSFWLDILKPMMQQIY 527 + LD+LK M + Sbjct: 492 GKELEILDLLKEMKAHLQ 509 >gi|149026371|ref|ZP_01836526.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP23-BS72] gi|147929333|gb|EDK80332.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae SP23-BS72] Length = 497 Score = 180 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 71/438 (16%), Positives = 151/438 (34%), Gaps = 62/438 (14%) Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEH 161 +FS + + +T+ + I F ++ D + +IYE+ Sbjct: 107 AFSRYMREAIFQINKPATLQKA------ISILDVFPTRGLDVDFDNDKQSITDIGDIYEY 160 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + + F TPR ++ + L+ + DP G+ GFL Sbjct: 161 LLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLV 208 Query: 222 DAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 A ++ + + HG + + + M++ +E + Sbjct: 209 SASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NP 261 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 I +LS+D ++ L+NPPF + + + + K Sbjct: 262 QISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKKT 310 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LFL L+ GGRAA+++ LF + IR+ ++EN ++A++++P Sbjct: 311 ELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMP 364 Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 + +F ++T + I + KV + + + KR+ I D+ I+ Sbjct: 365 SGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPIRDNDIPDII 420 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 + + E + D F + V + L +E + + + + Sbjct: 421 ERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILK 476 Query: 514 FWLDILKPMMQQIYPYGW 531 D+ K + + Sbjct: 477 KINDLEKEIQAGLAELEK 494 >gi|332975816|gb|EGK12695.1| type I restriction-modification system DNA-methyltransferase [Psychrobacter sp. 1501(2011)] Length = 491 Score = 180 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 84/497 (16%), Positives = 168/497 (33%), Gaps = 58/497 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E + I + + + L + Sbjct: 33 LLFLKIFDA-----QEEALEFEQENYKTPIPEKYLWRNWAADPEGITGDELLDFVNDEIF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + S ++ LL ++ + ++ + + + Sbjct: 88 VELKNLTAPVDTNPRGFVVRQGLSDAYNYMKNGTLLRQVINKLNEVDFNRSD-ERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE L+R S + A +F TPR V + P + + DP CGTG Sbjct: 147 IYEQLLRDLQSAGN--AGEFYTPRAVTRFIVDRV----------DPKLGERIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV + + G E + H +C M++ +E Sbjct: 195 GFLACSFDHVKNNYVETAEDHQILQKQILGVEKKQLPHLLCTTNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++NPPFG ++ +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDSDIDVIVTNPPFGG---TEEHGIEKNFPAEFQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF +++++ L E + IV L Sbjct: 300 ---LFLQLIIEVLAEK----GRAAVVLPDGTLFGEGVK---TKLKKMLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + + + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---DIWFYE--HPYPEGVKNYSKTKPMKFEEFQT 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + +G SR+ + ++ + + ++ LD + + E Sbjct: 404 EIDWWGDESDGFASRVENNHA---WKVSIEEIIGRNYNLDISNPYQGEVIDYDPNKLLAD 460 Query: 512 QSFWLDILKPMMQQIYP 528 + + + Q+ Sbjct: 461 YAKQQQSIDTLRSQLKD 477 >gi|225858683|ref|YP_002740193.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae 70585] gi|225720662|gb|ACO16516.1| type I restriction modification enzyme methylase subunit [Streptococcus pneumoniae 70585] Length = 497 Score = 180 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 92/559 (16%), Positives = 181/559 (32%), Gaps = 99/559 (17%) Query: 5 TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 TG + + +W+ A L + + + ++ L+ Sbjct: 3 TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44 Query: 59 YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111 G D E F + EY ST N + E Y I F N Sbjct: 45 ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99 Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160 K +D FS I + I F ++ D + +IYE Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ + + F TPR ++ + L+ + DP G+ GFL Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207 Query: 221 TDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 A ++ + HG + + + M++ +E + Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I +LS+D ++ L+NPPF + + + + K Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +LFL L+ GGRAA+++ LF + IR+ ++EN ++A++++ Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 P+ +F ++T + I + K+ + + + KR+ I+D+ I Sbjct: 364 PSGVFKPYAGVSTAILIFTKT-GNGGTDKIWFYD---MKADGLSLDDKRQPISDNDIPDI 419 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 ++ + E + D F + V + L +E + + + + Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475 Query: 513 SFWLDILKPMMQQIYPYGW 531 D+ K + + Sbjct: 476 KKINDLEKEIQAGLAELEK 494 >gi|327480083|gb|AEA83393.1| type I restriction-modification system, M subunit [Pseudomonas stutzeri DSM 4166] Length = 488 Score = 180 bits (458), Expect = 6e-43, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 161/478 (33%), Gaps = 59/478 (12%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S+++ I + + D G+++ L+ + R E S Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDD-----RELEWELMDDNYRS 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 I + + +L N L++ + +S+ A F Sbjct: 56 PIPESCRWRTWAADPEGMTGDALKDFIDNNLFPQLQN-LHEYSNTPAAFVVRSVFEDAYN 114 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 ++ LL ++ N+YE L+R + + A +F TPR V Sbjct: 115 YMKSGQLLRQVINKIQQGVDFNKAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPVTE 172 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVP 242 ++ P + + DP CGTGGFLT + H + + Sbjct: 173 FMVRMV----------DPKLDEKVMDPACGTGGFLTCTIEHKRSRYVKTADDERTLQASI 222 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNP 299 +G E +P H + M++ +E I+ +TL++ +R ++NP Sbjct: 223 YGVEKKPLPHLLATTNMILHGIEV------PNQIRHDNTLARPLISWGPKERVDCIVANP 276 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG ++G F + + + LFL+ + + L+ GGRAA+V Sbjct: 277 PFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMHLLKE----GGRAAVV 320 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417 L LF S I+ LL + IV LP +F + T I T L + + Sbjct: 321 LPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTPTK 376 Query: 418 RRGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 Q ++ R + + + D + +R +F+ + Sbjct: 377 EVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSETDGFAARVENEFAWKVSLDEL 434 >gi|149177180|ref|ZP_01855786.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Planctomyces maris DSM 8797] gi|148843894|gb|EDL58251.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Planctomyces maris DSM 8797] Length = 489 Score = 180 bits (458), Expect = 6e-43, Method: Composition-based stats. Identities = 91/457 (19%), Positives = 163/457 (35%), Gaps = 72/457 (15%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLG 92 L+ L+ LE R +V + E + + + + + L Sbjct: 33 LFLKYLDD-LERERESVASLSGKAFEPILRPEYRWGIWAMPRKDDGEIDHHAALTGDDLL 91 Query: 93 STNTRNNLESYIASF--SDNAKAIFE-DFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+A F S + E FS RL+ L ++ + Sbjct: 92 -DFVNQKLFPYLAKFKTSAESTDTIEYKIGEIFSELKNRLQSGYNLREVINLVDELRFQT 150 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 V MS++YE I+ G ++ TPR ++ ++ +P + Sbjct: 151 S-VEKHEMSHLYESKIQNMG-NAGRNGGEYYTPRPLIRAIVKVI----------NPQIGE 198 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPILVPHGQELEPETHAVCVAG 258 T+YD G+ GFL +A + ++D +I G+E + + Sbjct: 199 TIYDAAVGSAGFLVEAFDFLSDESNHGGKKLSHKDARILQQKTFTGKEKKSLAFIIGTMN 258 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + N+ ++L++ D+ RF CL+NPPFG K K+ Sbjct: 259 MILHGIE-------APNLIHTNSLTENLADIQEKDRFDICLANPPFGGKERKEVQQNFPI 311 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 K + + LFL H L+ GGRA IV+ ++ L N S Sbjct: 312 --------------KTGETAFLFLQHFIKLLK----AGGRAGIVIKNTFLSNSDNAS--V 351 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ LLE+ + I+ LP F + T + K + QL R Sbjct: 352 SLRKQLLESCDLHTILDLPGGTFTGAGVKTVVLFFEKGKATRKIWYYQL-------NPGR 404 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 N G K +N+ + + + ++ S ++ + Sbjct: 405 NLG-KTNPLNEADLAEFVKLQPKKKESDNSWTVNIKD 440 >gi|227114146|ref|ZP_03827802.1| subunit M of type I restriction-modification system [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 490 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 93/495 (18%), Positives = 175/495 (35%), Gaps = 58/495 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + T+ E I + + + +L + + Sbjct: 33 LLFLKIFD-----TQEEELELEQDDYQFPIPQRYLWRSWAANSEGITGEALLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ N + FS ++ LL ++ + I+ + + + Sbjct: 88 PTLKNLTTPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V + P + ++ DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL A +HV + + +G E + H +C ML+ +E Sbjct: 195 GFLACAFDHVKEHYVNTTEDHKTLQKQIYGVEKKQLPHLLCTTNMLLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ +TL+K ++ ++NPPFG ++D +EK R + +D Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L GRAA+VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLVIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEACNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + + ++ + Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---QVWFYE--HPYPDGVKNYSKTKPMKFEEFQT 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + S +G SR ++ + + +F LD + E Sbjct: 404 EIDWWGSEADGFASRE---ENHQTWKVSIDEIIARNFNLDIKNPYQGEIISHDPDELLAQ 460 Query: 512 QSFWLDILKPMMQQI 526 L ++ + Q+ Sbjct: 461 YQTHLAEIRELRNQL 475 >gi|296535589|ref|ZP_06897770.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas cervicalis ATCC 49957] gi|296264105|gb|EFH10549.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas cervicalis ATCC 49957] Length = 483 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 90/489 (18%), Positives = 161/489 (32%), Gaps = 70/489 (14%) Query: 4 FTGSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + + L +W A + D+ + + L+ L+ R + + Sbjct: 1 MSDTENVLTAKVWNLAHVMNNAGVGSGDYVEQVTYLLFLK-----LDTEREE--DGLPSL 53 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++G +L TL + L I ++ Sbjct: 54 LPEECRWARLAALSGRELAQHYARTLETLAG---QPGLVGTI---------------YTR 95 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 +E+ L+++ + V IYE L+ R S+ GA + TPR Sbjct: 96 ARNTIEEPAHLHRLVRMIGAENW--SGFGVDVKGAIYESLLERTASDTKSGAGQYFTPRP 153 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV- 241 V+ ++ P +T+ DP CGT GFL A H+ Sbjct: 154 VIQACVEVV----------DPRPGQTICDPACGTAGFLLAAFEHMRQKPEARDRETGRRM 203 Query: 242 ----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G ++ + + + L R I + L D G+R+ L+ Sbjct: 204 REEGFTGYDIVAGVARLAAMNLYLHGL----GRADVTPIHRADALLAD--PGRRWDVILT 257 Query: 298 NPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 NPPFG + + E E + + R + + + F+ H+ L GG Sbjct: 258 NPPFGRRQSIQVFTGDGEAETEREDYQRPDFNVT-TGNKQLNFVQHIMTVLAP----GGV 312 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AA+VL + LF G AG +IRR LL+ ++ LPT +F+R + + Sbjct: 313 AAVVLPDNVLFEGGAG---EKIRRRLLDEFECHTLLRLPTGIFYRQGVKANVLFF----E 365 Query: 416 EERRGKVQLINATDLW--TSIRNEGKKRRIINDDQRRQILDIYV-----SRENGKFSRML 468 R K A ++ + + K R + D + + + R+ + + Sbjct: 366 ARPRRKTPWTEALWVYDLRTNKRFTLKERPLRDADMAEFVSLAKLSDRAKRQETERFKRF 425 Query: 469 DYRTFGYRR 477 Y R Sbjct: 426 TYAELAARE 434 >gi|323494429|ref|ZP_08099538.1| type I restriction-modification system methyltransferase subunit [Vibrio brasiliensis LMG 20546] gi|323311359|gb|EGA64514.1| type I restriction-modification system methyltransferase subunit [Vibrio brasiliensis LMG 20546] Length = 520 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 106/513 (20%), Positives = 183/513 (35%), Gaps = 92/513 (17%) Query: 1 MTEFTG-----SAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLE 45 MT+ +A L + + + + GD LP L+ L+ Sbjct: 1 MTKKKTEKPMTTAQQLGSIVKSARQIMRKDKGLNGDLDR-------LPVLTWVMFLKFLD 53 Query: 46 CA--LEPTRSAVR-EKYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTN 95 L T++ V + + + + G SF N + ST+ Sbjct: 54 DLENLRETKALVEGKDFKPAIDAPYRWRDWAAKEGSITGDELISFVN----NDSTVRPDG 109 Query: 96 TRNN-LESYIASFSD-----NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 T L +Y+ + + + FS R+ LL + +GI + Sbjct: 110 TEGAGLFAYLKELQGENGKMDRRDVIATV-FSGLHNRMLNGYLLRDVIDKVNGIHF-NSS 167 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 +S +YE ++R + +F TPR VV + P + ++ Sbjct: 168 EEMHTLSRLYETMLREMRDAAG-DSGEFYTPRPVVRFMVEV----------TKPKLGESV 216 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLES 266 DP CGTGGFL +A++++ + G E +P + + +L+ LE Sbjct: 217 LDPACGTGGFLVEALSYLEGQCETVEDRAMLQGSSIFGGEPKPLPYLLVQMNLLLHGLEY 276 Query: 267 DPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 I G++L L R L+NPPFG E + G LG Sbjct: 277 -------PQIDSGNSLRFPLREMGDKDRVDVILTNPPFG-----------GEEEKGILGN 318 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRW 380 F + + ++ ++LFL + KL+ P G GGRAA+V+ + LF G + I+ Sbjct: 319 FPDDM-QTAETALLFLQLIMRKLKRPGQGSDAGGRAAVVVPNGTLFCDGVG---ARIKEE 374 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL+N + IV LP +F T+I L + ++ R + Sbjct: 375 LLKNFNLHTIVRLPEGVFSPYTDIPANLLFFDRSGPTKDIWYYEVSTPEG-----RRKYT 429 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K ++ + LD + SR + + Sbjct: 430 KTNPLDYSEFSDCLDWWHSRTENGCAWKVSSSD 462 >gi|254507574|ref|ZP_05119707.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio parahaemolyticus 16] gi|219549461|gb|EED26453.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio parahaemolyticus 16] Length = 496 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 95/496 (19%), Positives = 179/496 (36%), Gaps = 58/496 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L I + + + L + + Sbjct: 33 LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ D+ + + Sbjct: 88 PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V L P + + DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV + + HG E + H +C+ M++ +E Sbjct: 195 GFLACSFDHVKENYVTSTADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K + +NPPFG ++D +EK R + +D Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L+ GRA +VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLDKD----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + + ++ +Q Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + ++ + + +F LD + E + + Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQGEVISHDPEELLAN 460 Query: 512 QSFWLDILKPMMQQIY 527 +K + Q+ Sbjct: 461 YQQQQQDIKALRDQLK 476 >gi|295697501|ref|YP_003590739.1| N-6 DNA methylase [Bacillus tusciae DSM 2912] gi|295413103|gb|ADG07595.1| N-6 DNA methylase [Bacillus tusciae DSM 2912] Length = 502 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 101/470 (21%), Positives = 168/470 (35%), Gaps = 71/470 (15%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVR 56 + SLAN IW+ + L G + I L LR L+ E + Sbjct: 5 QTRESLANEIWRACDILRRDNNCGGVME------YIEHLAWLLFLRFLDAQEEEW--ETQ 56 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIF 115 K + I A + T ++ L L Y+ S + + Sbjct: 57 AKLAGRPYTRILDGDLRWSA----WATKDWPADRLL-EFVHGRLIPYLQSLGGDPLRETI 111 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + L + +GI+ H +S +YE L+RR GSE + A Sbjct: 112 RSVFAERNVIVCASGYNLKDVLTIINGIDFH-SQDDIFTVSQVYEELLRRLGSE-NRLAG 169 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGS 232 +F TPR VV L+ +P + T+YDP CGT GFL A + Sbjct: 170 EFYTPRPVVRFMVELV----------APQIGETVYDPACGTCGFLAQAYLFMIKSERTLE 219 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKR 291 HK GQE +P + + M++ + + + + +TL ++ +R Sbjct: 220 DHKTLQEKTFFGQEKKPLPALLGLMNMVLHGV-------TAPRVMRRNTLEENIRNVTER 272 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPFG + A F +LFL H+ KL+ Sbjct: 273 YDVVLTNPPFGGTEGRHIQAN-----------FPVQATAT---ELLFLQHIMKKLKP--R 316 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 G R +V+ LF G A ++++R LLE + +V+LP F +++ T L Sbjct: 317 DGARCGMVVPEGTLFRGGA---FADVKRVLLEQFNLHTVVSLPPGTFAPYSDVKTALLFF 373 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 +L L ++ K I D+ + ++ + + Sbjct: 374 ERPGPTTDIWYYEL----PLPEGLKKF-SKGSPIQDEHFEEARRLWKAWD 418 >gi|300087442|ref|YP_003757964.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527175|gb|ADJ25643.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 484 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 81/450 (18%), Positives = 160/450 (35%), Gaps = 67/450 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV------KVAGYSFYNTSEYSLSTL 91 L+ L LE R A++ + + I E + G + ++ Sbjct: 32 LLFLKYL-QGLEEER-ALQAELGGWKYKCILDEPYRWNSWAAPKNGNGKIDHNKAKTGDD 89 Query: 92 GSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELH 146 L Y+ SF A I F ++ + +I + + Sbjct: 90 LVEFVNTKLFPYLQSFKQTATGPDTIEYKIGEIFGEIKNKITSGYNMREIIDHVDELRFR 149 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 +S++YE I+ G ++ TPR ++ ++ +P + Sbjct: 150 -SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRSIIKVV----------NPQIG 197 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 T+YD CG+ GFL ++ +++ +G+E + + + + M++ Sbjct: 198 ETIYDGACGSAGFLCESFDYLKASNTLTTRDMDTLQKSTFYGKEKKSLAYVIAIMNMILH 257 Query: 263 RLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +E + NI +TL++ D+ R+ ++NPPFG K K+ Sbjct: 258 GIE-------APNILHTNTLTENLADIQEKDRYDIIMANPPFGGKERKEIQQNFPI---- 306 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + + + LFL H L+ GGRA IV+ ++ L N S +R+ Sbjct: 307 ----------RTGETAFLFLQHFIKMLK----AGGRAGIVIKNTFLSNSDNAS--VSLRK 350 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E+ + I+ P F + T + + QL RN G Sbjct: 351 LLMESCNLHTILDCPGGTFLGAGVKTVVLFFEKGAPTRKTWYYQL-------DPGRNLG- 402 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLD 469 K +ND+ + +++ + + S ++ Sbjct: 403 KTNPLNDNDLAEFVELQKTFADSPKSWSVE 432 >gi|254303653|ref|ZP_04971011.1| type I site-specific deoxyribonuclease methyltransferase subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323845|gb|EDK89095.1| type I site-specific deoxyribonuclease methyltransferase subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 498 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 89/500 (17%), Positives = 192/500 (38%), Gaps = 57/500 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ E + ++ FG ++ + N + R Sbjct: 35 LIFMKRLDQE-EQRKEKEKQLASIFGNTDEKFIFDENHQDIRWSNLIQLGDPKQLYDKVR 93 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156 N +I + D+ ++IF + + I ++ +L I +P V D Sbjct: 94 NEAFEFIKNLDDDKESIFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++YE+L+ + + F TP+ ++++ L+ P + + DP CGT Sbjct: 153 DLYEYLLSKLATSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200 Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 GFL ++ ++ K + HG + + + +L+ ++ Sbjct: 201 SGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK--- 257 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + +++ +LS D + L+NPPF K +V++ + L R + Sbjct: 258 ----TPKLKRIDSLSTDYSEENDYTLILANPPF-------KGSVDESLLSNTLTR----V 302 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LF+ L+ GGR A+++ LF A + +R+ L+EN+ +E Sbjct: 303 VKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQLE 356 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 A++++P+ +F ++T + I + V + T + KR + ++ Sbjct: 357 AVISMPSGVFKPYAGVSTGILIFTKT-GNGGTDNVWFYDMTADGY---SLDDKRNSVEEN 412 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILDKTGLARLEADIT 503 I++ + + +N K + D F ++ V +S + + E ++ Sbjct: 413 DIPDIIERFSNLKNEKDRKRTDKSFFVSKQEIVDNDYDLSINKYKEIVYEKVEYEEPEVI 472 Query: 504 WRKLSPLHQSFWLDILKPMM 523 +KL L +S + LK + Sbjct: 473 LQKLEELSKS-IDENLKELK 491 >gi|89076110|ref|ZP_01162469.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp. SKA34] gi|89048186|gb|EAR53769.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp. SKA34] Length = 497 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 94/462 (20%), Positives = 170/462 (36%), Gaps = 56/462 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L S I + + + +L + + Sbjct: 33 LLFLKVFDA-----QEEELELELDDYKSPIPEQYLWRNWAQDGEGITGEALLEFVNDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ D+ + + Sbjct: 88 YKLKNLTAPVDLNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSSERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + +F TPR V L P + + DP GTG Sbjct: 147 IYEQILKDLQSAGNS--GEFYTPRAVTRFIINRL----------DPKLGEAIMDPATGTG 194 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV D HG E + H +C+ M++ +E Sbjct: 195 GFLACSFDHVKDNYVKTAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K + +NPPFG ++D +EK R + +D Sbjct: 249 QIKHGNTLNKPLSSWDSNINVIATNPPFGGT---EEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 LFL + L+ GGRA +VL LF ++I++ L E + IV Sbjct: 300 ---LFLQLIIEVLDEGSETQNGGRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIV 353 Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 LP +F + T I T + + K + V + K + + ++ Sbjct: 354 RLPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPEGVKNYSKTKPMKFEEF 407 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 +Q +D + + E+G SR+ + ++ + + +F LD Sbjct: 408 QQEIDWWGNEEDGFASRVENNHA---WKVPIADIIERNFNLD 446 >gi|262375870|ref|ZP_06069101.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145] gi|262308964|gb|EEY90096.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145] Length = 498 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 80/515 (15%), Positives = 168/515 (32%), Gaps = 84/515 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +RRL+ + ++ A + S + Sbjct: 40 LLFIRRLDEI------QITKEKKANRLKTAVEKPIFTPEQ------DHLRWSKFITLGDP 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-------LLYKICKNFSGIELHPDTV 150 L IA+ D ++ ++ A LL K+ + + + Sbjct: 88 TQLYDTIANEVFPFIKSIGSEDDTTYSHHMKDARFTIPTPALLTKVVDLLAEVPMD---- 143 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +IYE+++ + + F TPR ++ + L+ P T+ Sbjct: 144 DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------QPKPTDTIC 191 Query: 211 DPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP CGT GFL A ++ + K G + + + M++ Sbjct: 192 DPACGTAGFLVAASEYLNEHHSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLH 251 Query: 263 RLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 +E + I+ +LS+ +F L+NPPF + + A + Sbjct: 252 GVE-------NPRIENRDSLSEAHSHIESQFSLILANPPFAGSLDYESCAKNIQA----- 299 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 + K +LFL L+ GGRAAI++ LF + ++R+ + Sbjct: 300 ------IVKTKKTELLFLALFLRILKT----GGRAAIIVPDGVLF--GSSKAHKDLRQKI 347 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 +E +EAI+++P+ +F ++T + I + KV + + K Sbjct: 348 VEEQKLEAIISMPSGVFKPYAGVSTAILIFTKT-ETGGTDKVWFYDMQADGY---SLDDK 403 Query: 441 RRIIN-----DDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 R ++ ++ I+ + R+ + S ++D + + Sbjct: 404 RNELDTSKHENNNIPDIIARFKNLEAESDRKATEQSFLVDKADIAANGYDLSINRYKEVV 463 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ + +L ++ LK M++ Sbjct: 464 YEQVEYEAPSKILADLELLEQEILKGMNELKEMLK 498 >gi|320155757|ref|YP_004188136.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio vulnificus MO6-24/O] gi|319931069|gb|ADV85933.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio vulnificus MO6-24/O] Length = 496 Score = 180 bits (456), Expect = 9e-43, Method: Composition-based stats. Identities = 95/496 (19%), Positives = 179/496 (36%), Gaps = 58/496 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L I + + + L + + Sbjct: 33 LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ D+ + + Sbjct: 88 PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V L P + + DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194 Query: 218 GFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV + + HG E + H +C+ M++ +E Sbjct: 195 GFLACSFDHVKENYVTNASDHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K + +NPPFG ++D +EK R + +D Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L+ GRA +VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLDKD----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + + ++ +Q Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + ++ + + +F LD + E + + Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQDEVVSHDPEELLAN 460 Query: 512 QSFWLDILKPMMQQIY 527 +K + Q+ Sbjct: 461 YQQQQQDIKALRDQLK 476 >gi|282907753|ref|ZP_06315595.1| type I restriction-modification system methyltransferase subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328658|gb|EFB58929.1| type I restriction-modification system methyltransferase subunit [Staphylococcus aureus subsp. aureus WW2703/97] Length = 237 Score = 180 bits (456), Expect = 9e-43, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 25/234 (10%) Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 K + GQE T+ + ML+ + R + +I+ TL F G F Sbjct: 10 KEAKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDA 64 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ KW D E +G L S F+ H+ + L+ G Sbjct: 65 VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 115 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413 A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + + Sbjct: 116 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 170 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466 K ++ V I+A++ + GK + ++D Q +I+D Y +E K+S Sbjct: 171 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSY 220 >gi|148264152|ref|YP_001230858.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] gi|146397652|gb|ABQ26285.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] Length = 506 Score = 180 bits (456), Expect = 9e-43, Method: Composition-based stats. Identities = 69/464 (14%), Positives = 158/464 (34%), Gaps = 87/464 (18%) Query: 13 NFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGG 64 + IW ++ L + + ++RL+ + ++ K + Sbjct: 11 DKIWDAFWTGGISDSLR-VIEQMSY------LLFIKRLDDLHTAKEKKANRLGKPIEEPI 63 Query: 65 SNIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + AG F S+ + + + ++++ + K Sbjct: 64 FGPKQDHLRWSRFREFEAGEMFRVVSQEVFPFIKNLHGNEE-----SAYARHMKD----- 113 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 I + LL ++ + S + + ++YE+++ + + F Sbjct: 114 ----AIFMIPTPSLLERVVEQISQVPME----DRDTKGDLYEYMLSKLTTAG--RNGQFR 163 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKI 236 TPR ++ + L+ P + DP CGT GFL A ++ + H Sbjct: 164 TPRHIIKMMVELM----------QPRPDDIICDPACGTAGFLVAAGEYLREHHGDLFHNE 213 Query: 237 PPILVPHGQELEP-----ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + M++ +E + I+ +LS Sbjct: 214 KLKKHFNEKLFNGFDFDSTMLRIASMNMMLHGVE-------NPAIEARDSLSSAADIADA 266 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF K D+D V K+ K +LF+ + L+ Sbjct: 267 YTLILANPPF--KGSLDEDTVAKDLLR---------TVKTKKTELLFIALMLRLLKP--- 312 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A+++ LF + ++R+ L++ +EA++++P+ +F ++T + I Sbjct: 313 -GGRCAVIVPDGVLF--GSSKAHLDLRKILVDGHKLEAMISMPSGVFRPYAGVSTGILIF 369 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + + V + + + KR + + +++ Sbjct: 370 TKTNSG-GTDHVWFYD---MQADGFSLDDKRNPVEQNDIPDVVE 409 >gi|167768049|ref|ZP_02440102.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1] gi|167710378|gb|EDS20957.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1] gi|291561046|emb|CBL39846.1| Type I restriction-modification system methyltransferase subunit [butyrate-producing bacterium SSC/2] Length = 488 Score = 180 bits (456), Expect = 9e-43, Method: Composition-based stats. Identities = 81/434 (18%), Positives = 162/434 (37%), Gaps = 69/434 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +++L+ TR I E A Y S++ LG N Sbjct: 35 LLFIKQLDEV--ETRKE-----RDANILGIPYEGIF-PADCQQYRWSKF--KNLGDANEI 84 Query: 98 NNLE-----SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 +L +I S + ++ + + I ++ LL K+ G+ L Sbjct: 85 YDLMMNGVFPFIKSLHPDGESAYSKY-MGDAIFKIPTPALLTKVIDGIDGLNL-----EG 138 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++YE+L+ + E + F TPR ++ + L+ P + DP Sbjct: 139 DSKGDLYEYLLSKL--ESAGKNGQFRTPRHIIQMMVELV----------KPVPSDIICDP 186 Query: 213 TCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 G+ GFL A ++ + + +G +++ + ML+ ++ Sbjct: 187 AMGSAGFLMAAQQYLRKNHKDLFLNAEQREHFNHEMFYGFDMDRTMLRIGAMNMLLHGVD 246 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 NI+ +LS+ +++ L+NPPF K D D V + Sbjct: 247 -------DPNIEYKDSLSEMNTDKEKYSLILANPPF--KGSLDYDGVSADLLK------- 290 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + K +LFL+ ++ GGRAA+++ LF + IR+ L+EN Sbjct: 291 --VAKTKKTELLFLVLFLRIMK----IGGRAAVIVPDGVLF--GSSRAHKAIRKELIENH 342 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 ++A++++P+ +F ++T + + + KV + + R KR+ I Sbjct: 343 KLDAVISMPSGVFKPYAGVSTAILLFTKT-GAGGTDKVWFYD---MKADGRTLDDKRQEI 398 Query: 445 NDDQRRQILDIYVS 458 ++ I++ Y + Sbjct: 399 EENDIPDIIERYQN 412 >gi|261868701|ref|YP_003256623.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414033|gb|ACX83404.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans D11S-1] Length = 360 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 53/352 (15%), Positives = 108/352 (30%), Gaps = 72/352 (20%) Query: 35 ILPFTLLRRLECALEPTRSAVR--------------------EKYLAFGGSNIDLESFVK 74 +L L+ + + + +R E+Y ++ + Sbjct: 1 MLGLIFLKYISDSFTAQQDKIRVELSNPENPLYLDRTFYNSDEEYQEALDFELENRDYY- 59 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLESYI---ASFSDNAKAIFEDFD-FSSTIARLE-- 128 A F+ + L + N + + F A+ I + FD +L+ Sbjct: 60 TADNVFWVPASARWQALQEVSIL-NTGAELPWGGKFVGVARLIDDAFDAIEKDNEKLKGV 118 Query: 129 ---------KAGLLYKICKNFSGIELHPDTVP--------DRVMSNIYEHLIRRFGSEVS 171 L + FS + ++ ++YE+ + RF Sbjct: 119 LQRISGYAVNEDTLRGLIMLFSDTNFTAPSYNGEPVHLGAKDILGHVYEYFLGRFAQAEG 178 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + + TP+ +V L +L +YDP G+GGF + Sbjct: 179 KRGGQYFTPKSIVSLIVEML-----------EPYKGRVYDPAIGSGGFFVQTERFITAHQ 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +GQE P T + M IR ++ D + + + ++ K+ Sbjct: 228 GNIN---QASIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA------DSFAQPQHLDKK 278 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + ++NPPF + R+ G P + + +L H+ Sbjct: 279 MDFIMANPPFNIS-------DWWSESLADDPRWAYGTPPKGNANFAWLQHMI 323 >gi|291615456|ref|YP_003522564.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4] gi|291582518|gb|ADE16974.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4] Length = 486 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 88/507 (17%), Positives = 173/507 (34%), Gaps = 78/507 (15%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 I +RL+ VRE+ G I+ F S Sbjct: 32 ITYLLFTKRLDELH-----TVRERKANRLGKPIEDPIFSAKQQ-------PLRWSRFKDR 79 Query: 95 NTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPD 148 E + K + E + + + LL ++ + + Sbjct: 80 EAGEMYELFRDEVFPFIKKLHEGRESAYSRFMKDAVFVIPTPNLLQRVVTMLEALPME-- 137 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++YE+++ + + F TPR ++ + L+ +P T Sbjct: 138 --DRDTKGDLYEYMLSKIATAG--QNGQFRTPRHIIKMMVELV----------APTPQDT 183 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261 + DP CGT GFL A ++ + + + HG + + + M + Sbjct: 184 IADPACGTCGFLVAAGEYLREHHPDIFHDAALRQHFNHGLFHGTDFDSSMLRIGAMNMTL 243 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E +I+ +LS++ R+ L+NPPF K +++ E + Sbjct: 244 HGVE-------DPDIRGLDSLSQEGTGIRDRYTVILANPPF-------KGSLDYESVAKD 289 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 L R L +LFL +L+ GGR A ++ LF + EIRR Sbjct: 290 LLR----LTSTKKTELLFLALFLCQLK----AGGRCACIVPDGVLF--GSSKAHREIRRH 339 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEG 438 L+E+ ++ ++++P+ +F ++T + I + + +V + A D + + Sbjct: 340 LVEDHKLDGVISMPSGVFKPYAGVSTAILIFTRTDSG-GTDQVWFYDMAADGF----SLD 394 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 KR + ++ IL + R K + F + + L + Sbjct: 395 DKREPVKENDIPDILAKWKKRNPKKDTDRTAKAFF----VPKAEIAENKYDLSINRYKEV 450 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQ 525 + + PL L+ L+ +QQ Sbjct: 451 QYE-AVEYEPPLVILDQLEALETEIQQ 476 >gi|28897162|ref|NP_796767.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD 2210633] gi|260361456|ref|ZP_05774515.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus K5030] gi|260878069|ref|ZP_05890424.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus AN-5034] gi|260896964|ref|ZP_05905460.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus Peru-466] gi|28805371|dbj|BAC58651.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088725|gb|EFO38420.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus Peru-466] gi|308090051|gb|EFO39746.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus AN-5034] gi|308111003|gb|EFO48543.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus K5030] Length = 496 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 96/496 (19%), Positives = 178/496 (35%), Gaps = 58/496 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L I + + + L + + Sbjct: 33 LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ D+ + + Sbjct: 88 PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V L P + + DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV + + HG E + H +C+ M++ +E Sbjct: 195 GFLACSFDHVKENYVTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K + +NPPFG ++D +EK R + +D Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L+ GRA +VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLDKD----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + + ++ +Q Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR T ++ + + +F LD + E + + Sbjct: 404 EIDWWGNEADGFASR---TETKQAWKVSIEDIIERNFNLDIKNPYQDEVVSHDPEELLAN 460 Query: 512 QSFWLDILKPMMQQIY 527 +K + Q+ Sbjct: 461 YQQQQQDIKALRDQLK 476 >gi|194396843|ref|YP_002037523.1| type I restriction-modification system subunit M [Streptococcus pneumoniae G54] gi|194356510|gb|ACF54958.1| type I restriction-modification system, M subunit, putative [Streptococcus pneumoniae G54] Length = 497 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 80/551 (14%), Positives = 178/551 (32%), Gaps = 83/551 (15%) Query: 5 TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 TG + + +W+ A L + + + ++ L+ + Sbjct: 3 TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV--ELGRESDAE 53 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS------FSDNAK 112 +L + + + +F N + T + FS + Sbjct: 54 FLGIPYEGVFPKDKPEXRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDTAFSRYMR 113 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEHLIRRFGS 168 + +T+ + I F ++ D + +IYE+L+ + + Sbjct: 114 EAIFQINKPATLQKA------ISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLST 167 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 F TPR ++ + L+ + DP G+ GFL A ++ Sbjct: 168 AGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLVSASRYLK 215 Query: 229 DCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + G + + + M++ +E + I + Sbjct: 216 RKKDEWETNTDNINHFHNQMFRGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLDS 268 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 LS+D ++ L+NPPF + + + + K +LFL Sbjct: 269 LSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKKTELLFLSL 317 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 L+ GGRAA+++ LF + IR+ ++EN ++A++++P+ +F Sbjct: 318 FLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPY 371 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 ++T + I + KV + + + KR+ I+D+ I++ + E Sbjct: 372 AGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLE 427 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 + D F + V + L +E + + + + D+ K Sbjct: 428 KEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEK 483 Query: 521 PMMQQIYPYGW 531 + + Sbjct: 484 EIQAGLAELEK 494 >gi|315444136|ref|YP_004077015.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] gi|315262439|gb|ADT99180.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] Length = 477 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 89/465 (19%), Positives = 155/465 (33%), Gaps = 81/465 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + + N +W L D+G I T L + + ++ A + Sbjct: 2 TTGDVVNKLWGFCHVLR--HDGIDYGDYIEQLTYLLFI---------KMADERGAELPQH 50 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 D K +G + +L TLG + I D FS + R Sbjct: 51 TDWPYLRKQSGSDLLDAYVEALRTLGKEH-----------------GILGDI-FSGSQNR 92 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L K+ E + V + +E L+ + SE +GA + TPR ++ Sbjct: 93 FSNPVNLQKLIGLIDQTEWT--AIDTDVKAAAFEGLLEKAASEGKKGAGQYFTPRILIQS 150 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPI 239 + + DP GTGGFL A + K Sbjct: 151 MVRCVKP------DPRASKDFKVCDPAVGTGGFLIAAYEWLKAETKGGAFDRDTAKRIRR 204 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +G EL P + + + + ++E I G ++ + + +R+ L NP Sbjct: 205 QTYYGNELVPRPRRLALMNLYLHQVE--------PRITLGDSIYE-VPGSQRYDVILMNP 255 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG K E F S+ + FL H+ L+ GGRAA+V Sbjct: 256 PFGTKGAGQPPDRED---------FVVQT---SNKQLNFLQHVLTTLKK----GGRAAVV 299 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417 + + LF +A E+ + L+E+ + ++ P F + T + + + E Sbjct: 300 VPDNVLFAQQA----GEVFQVLMEDCDLHTVLRCPRGTFSPYTEGTKTNVIFFTKGRPTE 355 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + +A ++ KK R ++ + Y NG Sbjct: 356 HTW---IYDARS---NVPKITKKSRPLSPRHFAEFEKCYGDDPNG 394 >gi|261416114|ref|YP_003249797.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372570|gb|ACX75315.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327814|gb|ADL27015.1| putative type I restriction-modification system, M subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 481 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 91/504 (18%), Positives = 170/504 (33%), Gaps = 77/504 (15%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ L+ E Y ++ N L + Sbjct: 33 LFLKYLDNLEAEREEEAELKGETYERIIDKKFRWNTWAAPKTK---NGEPDHAKALTGDD 89 Query: 96 ----TRNNLESYIASFSDNA---KAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELH 146 N L Y+ F + A +++ F ++ L +I ++ Sbjct: 90 LTDFVNNKLFPYLKKFKETATTPQSLEYKIGEIFGELRNKITSGYNLREIL-WYADALSF 148 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + MS++YE IRR G ++ TPR ++ ++ P + Sbjct: 149 QSSEDKHEMSHLYEDKIRRMG-NAGRNGGEYYTPRPLIRTIVRII----------DPKIG 197 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 T+ DP CG+ GFL +A ++ + +GQE + + + + M++ Sbjct: 198 ETVLDPACGSAGFLCEAYAYMKQKVKSVADRETLQKKTFYGQEKKGLAYIIGIMNMILHG 257 Query: 264 LESDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + + NI +TLS+++ R ++NPPFG K + Sbjct: 258 VN-------APNILHTNTLSENMANVEQKMRKDVIIANPPFGGKERAEVQQNFPI----- 305 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 K S+ + LF+ + L+ GGRA IV+ ++ L N S +R+ Sbjct: 306 ---------KTSETAYLFMQYFVKLLK----AGGRAGIVIKNTFLSNTDNASVM--LRKE 350 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LLEN + I+ LP+ +F + T + + E+ Q RN G K Sbjct: 351 LLENCDLHTILDLPSGVFTGAGVKTVVLFFEKGRPTEKIWYYQP-------DFGRNLG-K 402 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARL 498 + +D + + + + + + S ++ + + V P +K L Sbjct: 403 TNPLTEDDLAEFVKLQKKKTDSEKSWTINVKDLNPETYDLSVKNP-------NKKTEVEL 455 Query: 499 EADITWRKLSPLHQSFWLDILKPM 522 T K IL + Sbjct: 456 RDAKTIIKEMQSLDEENRKILAKL 479 >gi|166368435|ref|YP_001660708.1| type I restriction enzyme M protein [Microcystis aeruginosa NIES-843] gi|166090808|dbj|BAG05516.1| type I restriction enzyme M protein [Microcystis aeruginosa NIES-843] Length = 495 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 83/509 (16%), Positives = 173/509 (33%), Gaps = 69/509 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ LE + ++ + S + F N + + Sbjct: 35 LLFIKRLDD-LELAKERRAQRLGENLENPTFTPSQQHIRWSRFKNIDDAETMLQIVRDEA 93 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + FS + + + LL + + I + + Sbjct: 94 FPFIKDMGQFS---RGSTYAKHMKDAVFLIASPALLGTVIEQIEKIPME----DRDTKGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+++ + + F TPR ++ + LL +PG + DP CGTG Sbjct: 147 LYEYMLSKLSTAG--TNGQFRTPRHIIKMMVELL----------APGPREVICDPACGTG 194 Query: 218 GFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 GFL A +V + + + + HG + + + +++ +E Sbjct: 195 GFLVAAAEYVRELKDSEGGRLLHERGNLEHFNNQMFHGFDFDATMLRIGSMNLMLHGIE- 253 Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 I+ +LS+D F L+NPPF K +K + K+ Sbjct: 254 ------QPIIEARDSLSEDHAGVEDSFTMILANPPF--KGSVEKSTIAKDLSKIID---- 301 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + +LF+ L+ GG+ A+++ LF + +IR L+E Sbjct: 302 -----TTKTELLFMALFLRLLKT----GGKGAVIVPDGVLF--GSSKAHKDIRTILVEEH 350 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 +E ++++P+ +F ++T + I + E+ V + + + KR+ Sbjct: 351 KLEGVISMPSGVFKPYAGVSTAILIFTKLGVREKGTDFVWFYD---MVADGFSLDDKRQP 407 Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 I D+ +L + R++ K + F + ++ L +E + Sbjct: 408 IADNDIPDLLRCWQQRDSAKDTNRQGKAFF----VPREEIQANAYDLSINRYKEIEYE-- 461 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 ++S L L+ + I A Sbjct: 462 --EVSYEPPKVILQKLRALEADIRQDLDA 488 >gi|330937291|gb|EGH41302.1| Type I restriction-modification system, M subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 313 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 117/325 (36%), Gaps = 34/325 (10%) Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + L +GQE ET +C+ + + L+ + + Sbjct: 1 MFVQSAKFKDAHAKQLGSKGDLPIYGQEKMAETRRLCLMNLAVHGLDGNIGQ------TY 54 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 GST + D R Y L+NPPF + + K R+ G+P + + + Sbjct: 55 GSTFTNDQHKTLRADYILANPPFNISDWEGE-------KLKGDPRWAHGIPPKGNANYAW 107 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L H+ +L GRA +VL++ + SGE IR+ ++ D++E +VALP LF Sbjct: 108 LQHILARLSSR----GRAGVVLANGSMST--QQSGEDIIRQSMVIKDVVECMVALPGQLF 161 Query: 399 FRTNIATYLWILSNRKTEERRGK------VQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 T I LW LS K GK + I+A + +K+ +D I Sbjct: 162 SNTQIPACLWFLSKDKRIGPNGKTDRSSQILFIDARK--ATSGRISRKQVEFTEDDMEGI 219 Query: 453 LDIYVSRENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 Y N FS D F Y + FIL E + + Sbjct: 220 AQTYHRWRNTVFSDGEGYEDIPGFCYSA-SFEDVQKHGFILTPGRYVGAE---SVEEDDQ 275 Query: 510 LHQSFWLDILKPMMQQIYPYGWAES 534 L +++ + +QI E Sbjct: 276 LFSDKLNHLIEQLGEQIAERNAIEK 300 >gi|37678450|ref|NP_933059.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] gi|37197190|dbj|BAC93030.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] Length = 530 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 113/564 (20%), Positives = 197/564 (34%), Gaps = 86/564 (15%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRS-- 53 +A L + + + + GD LP L+ L+ LE R Sbjct: 17 TTAQQLGAIVKSSRQIMRKDKGLNGDLDR-------LPMLTWIMFLKFLDD-LEQMRETE 68 Query: 54 AVRE--KYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR--NNLES 102 AV E + + + + G +F N E + G+ L S Sbjct: 69 AVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAFINNDEA-MRPDGTRGIGLFAYLRS 127 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + + + F R+ LL + +GI + +S +YE + Sbjct: 128 LQGDNGGDRRDVIATV-FKGMQNRMINGYLLRDVVDKINGIHF-NSSEEMHTLSRLYETM 185 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R + +F TPR VV ++ P + ++ DP CGTGGFL + Sbjct: 186 LREMRDAAG-DSGEFYTPRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVE 234 Query: 223 AMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 A H+ ++ G E + + + +L+ LE I Sbjct: 235 AFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-------PRIDPE 287 Query: 280 STLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 ++L L R L+NPPFG E + G LG F + + ++ +M Sbjct: 288 NSLRFPLREMGDKDRVDVILTNPPFG-----------GEEEKGILGNFPEDM-QTAETAM 335 Query: 337 LFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + KL+ P +G GGRAA+V+ + LF+ + I+ LL+N + IV L Sbjct: 336 LFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS---ARIKEELLKNFNLHTIVRL 392 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 P +F T+IA L + Q+ R + K + + + + Sbjct: 393 PEGVFAPYTDIAGNLLFFDRSGPTDDIWYYQITVPEG-----RKKYTKTKPMESHEFDEC 447 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRR---IKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 L+ + +R + + + L L E K++ Sbjct: 448 LNWWSNRIVNQNAWKESASEIIKYSESGQLIDVNLDRKNPNSLEVLEHEEPMDLIEKITT 507 Query: 510 LHQSFWLDILKPMMQQIYPYGWAE 533 +S L IL+ + +I G ++ Sbjct: 508 KEES-LLAILEQIKAEISTQGISK 530 >gi|154150574|ref|YP_001404192.1| N-6 DNA methylase [Candidatus Methanoregula boonei 6A8] gi|153999126|gb|ABS55549.1| N-6 DNA methylase [Methanoregula boonei 6A8] Length = 477 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 84/467 (17%), Positives = 155/467 (33%), Gaps = 87/467 (18%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + +W L D+G I ++ + + Sbjct: 1 MSDVVQKLWGFCHTLR--HDGIDYGDYIEQITYLLFIKMAD------------ERGVKLP 46 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 D ++ ++ +G + + L TLG + D F+ + Sbjct: 47 EGCDWKTLMEKSGTNLSDHYVDVLRTLGQQP-----------------GLLGDI-FAGAL 88 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +R L K+ V V + +E L+ + SE +GA + TPR ++ Sbjct: 89 SRFTNPVNLKKLIGLIDETAWTELNVD--VKAEAFEGLLEKAASEGKKGAGQYFTPRILI 146 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIP 237 + + DP CGTGGFL + + + K Sbjct: 147 QSIVRCMKP------DPRKKADFAICDPACGTGGFLVCSYEWLLEQTKGGALDRDVAKRV 200 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQEL + + + + +E I+ G ++ ++ +RF L+ Sbjct: 201 LKDTYFGQELVARPRRLALMNLFLHNVEPV--------IKYGDSIYENP-DNRRFDVVLT 251 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K + + S+ + F+ H+ L+ GGRAA Sbjct: 252 NPPFGTKGANQAPDRDD------------FVVSTSNKQLNFVQHVMTILKP----GGRAA 295 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 +V+ + LF +A E+ + L E+ + I+ LP F + T + + Sbjct: 296 VVVPDNVLFADQA----GEVFKVLTEDCNLHTILRLPNGTFTPYSPGTKTNVLFFTKGFP 351 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 E I D T++ KK R + + + +Y + NG Sbjct: 352 TET------IWVYDDRTNVPGITKKDRPLTPEYFAEFEKVYGADPNG 392 >gi|148977936|ref|ZP_01814489.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium SWAT-3] gi|145962882|gb|EDK28154.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium SWAT-3] Length = 496 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 99/467 (21%), Positives = 174/467 (37%), Gaps = 71/467 (15%) Query: 38 FTLLRRLEC-------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 L+ + L+ +S + E+YL + D E A F N + Sbjct: 33 LLFLKVFDAQEEELELELDDYKSPIPEQYL-WRNWAQDAEGITGEALLEFVN--DDLFYK 89 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L NL + + N + FS ++ LL ++ + I+ D+ Sbjct: 90 LK------NLTAPVDL---NPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSS 139 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +IYE +++ S + A +F TPR V L P + ++ Sbjct: 140 ERHLFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFIVDRL----------DPKLGESIM 187 Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP GTGGFL + +HV D HG E + H +C+ M++ +E Sbjct: 188 DPATGTGGFLACSFDHVKDNYVKTAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV- 246 Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I+ G+TL+K + +NPPFG ++D +EK R Sbjct: 247 -----PVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR--- 295 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + + LFL + L GRA +VL LF ++I++ L E Sbjct: 296 ------ETADLFLQLIIEVL---DENNGRAGVVLPDGTLFGEGVK---TKIKKMLTEECN 343 Query: 387 IEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + IV LP +F + T I T + + K + V + K + + Sbjct: 344 LHTIVRLPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPEGVKNYSKTKPM 397 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 ++ +Q +D + + E+G SR+ + ++ + + +F LD Sbjct: 398 KFEEFQQEIDWWGNEEDGFASRVENNHA---WKVPIADIIERNFNLD 441 >gi|209523415|ref|ZP_03271970.1| N-6 DNA methylase [Arthrospira maxima CS-328] gi|209496157|gb|EDZ96457.1| N-6 DNA methylase [Arthrospira maxima CS-328] Length = 507 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 170/470 (36%), Gaps = 81/470 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95 L+ L+ LE R A+ + L I E++ +S++ + + + Sbjct: 32 LLFLKYLDD-LEEER-AMEAELLGKSYEFILDEAYR----WSYWAAPKLPSGDIDRNHAL 85 Query: 96 TRNNLESYIA--------SF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSG 142 T ++L Y+ F + +A I F + + L + + Sbjct: 86 TGDDLIEYVNNVLFPHLQGFKQRAASADTIEYKIGEIFGEIKNKFQSGYGLREALELVDE 145 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 ++ +S++YE I+ G ++ TPR ++ ++ Sbjct: 146 LKFQTQK-EKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIRVV----------K 193 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGM 259 P + +YD CG+ GFL ++ +++ ++ G+E + + + + + Sbjct: 194 PKIGDRIYDGACGSAGFLCESYDYLRQGKLTTQQLRLLQTGTLFGKEKKSLAYVIAIMNL 253 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 ++ ++ + NI +TL++ D+ RF+ L+NPPFG K+ Sbjct: 254 ILHGID-------APNIIHTNTLAENLSDIQEKDRFNVVLANPPFGGNERKEVQQN---- 302 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 F K + + LFL H L++ GGRA IV+ ++ L N S Sbjct: 303 -------FPV---KTGETAFLFLQHFIKILKV----GGRAGIVIKNTFLSNSDNAS--RA 346 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-RGKVQLINATDLWTSI- 434 +R+ LL + + I+ P F + T + + +G + Sbjct: 347 LRQQLLSDCNLHTILDCPGGTFIGAGVKTVVLFFEKGNPSDSLQGMPLFSQGKSHAEGMA 406 Query: 435 ------------RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 RN G K +ND+ ++ +++ + + S +D Sbjct: 407 TRKIWYYQLDPGRNLG-KTNPLNDEDLQEFVELQATFADSDKSWSVDVAD 455 >gi|21228806|ref|NP_634728.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] gi|20907325|gb|AAM32400.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] Length = 474 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 88/467 (18%), Positives = 156/467 (33%), Gaps = 87/467 (18%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + +W L + D+G I L+ + + Sbjct: 1 MSDIVQKLWGFCHTLR--HEGIDYGDYIEQITYLLFLKMAD------------EREIKLP 46 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 D +S + +G +L TLG + + D F+ + Sbjct: 47 EACDWQSLKEKSGTELTEHYNDALRTLGKQ-----------------EELLGDI-FAGAL 88 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +R L KI E + V + +E L+ + SE +GA + TPR V+ Sbjct: 89 SRFHNPVSLKKIISLIDETEWT--GLDIDVKAMAFEGLLEKAASEGKKGAGQYFTPRIVI 146 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIP 237 ++ DP CGTGGFL A + K Sbjct: 147 QTIVRCTKPD------PRNHRDFSIMDPACGTGGFLVCAYEWLKAVTGGGALERDLAKKI 200 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 GQEL + + + + +E + I+ G ++ + K+F L+ Sbjct: 201 RYSTYFGQELVERPRRLALMNLYLHGIEPE--------IKLGDSIYEIP-ESKKFDVVLT 251 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K E + + S+ + F+ H+ L+ GGRAA Sbjct: 252 NPPFGTKGANQAPVRED------------FVIETSNKQLNFIQHVMTILKP----GGRAA 295 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 IV+ + LF +A E+ + L E+ + ++ LP F + T + + Sbjct: 296 IVVPDNVLFADQA----GEVFKVLCEDCDLHTVLRLPDGTFTPYSPGTKTNVIFFTKGIP 351 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 +R + + T++ KK R + + + + S NG Sbjct: 352 TDRTW---VYDCR---TNVPKITKKDRPLTKEHFAEFEKCFGSDPNG 392 >gi|326802758|ref|YP_004320576.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a] gi|326650095|gb|AEA00278.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a] Length = 287 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 121/293 (41%), Gaps = 31/293 (10%) Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294 + GQE+ T+ + M++ + +D + ++ G TL D T + F Sbjct: 2 ENSIRYFGQEINTSTYNLAKMNMMLHGVPTD-----HQKLRNGDTLDADWPTDEPTNFDI 56 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNG 352 L NPP+ +KW DK ++ RF LP S FL+H L Sbjct: 57 VLMNPPYSQKWSADKGFLD-------DPRFAAYGVLPPKSRADFAFLLHGFYHLRTD--- 106 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G IVL LF G E ++R+ +LEN I+ ++ LP +LF+ T+I T + +L Sbjct: 107 -GTMCIVLPHGVLFRGA---SEGKLRQAMLENGYIDTVIGLPENLFYNTSIPTTIIVLKK 162 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471 +T V I+A+ + ++ + I+ + +I+D Y RE+ K++ Y Sbjct: 163 NRTSR---DVFFIDASKEFEKVKT----QNILTKEHIDKIIDTYNKREDVDKYAHKASYE 215 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + P + + + ++ ++++ + + L+ + Sbjct: 216 EIQENDYNLNIPRYVDTFEEPEPIDIVQVSKDMQEINQELEQTTAEFLEMVDD 268 >gi|158521272|ref|YP_001529142.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158510098|gb|ABW67065.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 490 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 95/538 (17%), Positives = 182/538 (33%), Gaps = 91/538 (16%) Query: 17 KNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 + L + + D + L L+ + A E D Sbjct: 18 NACDQL--NQEGVDARNYVEQLAWLFFLKAFDEA---------ETRREQEADFDDTAYGR 66 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAG 131 +++G Y S ++ +T ++ +I S + + D + R+ Sbjct: 67 RLSGQ--YAWSSWARNTDHPDQMLEFVDGKLWIKLTSPDPQKGLGDDLLAQRFRRIFDNV 124 Query: 132 L--------LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ + + V+S IYE L++R ++ + A +F T R + Sbjct: 125 RNYCRRGISFARVVQQVDKLHFS-SETDVIVLSEIYEDLLKRVAADSAGYAGEFYTQRHI 183 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPI 239 + ++ P +YDP GT GFL +A +++ Sbjct: 184 IRAMVEVV----------QPKPKDKVYDPCFGTAGFLGEAADYIRRNNTLSGPQLDALQK 233 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCL 296 +G E++P T+ + M++ +E N++ +TL S+++ R+ L Sbjct: 234 KTFYGLEIKPLTYLLGTMNMILHGIEG-------ANLELTNTLEIHSQNVGEKARYDVIL 286 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPP+G K G F + S LFL H+ L GGRA Sbjct: 287 SNPPYGGKMAS-----------GMQTNFRV---RSSATECLFLQHIMANLAK----GGRA 328 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT 415 +V+ LF G ++R+ LLE + I++LP F T + T + K Sbjct: 329 GVVIPEGVLFRGGPDQ---KVRKELLEQFNVHTILSLPAGCFLPYTGVKTNVIFFDRPKD 385 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 + V T+ +++ R+ I DQ L + R+ G S Sbjct: 386 DSGTKSVWFCELTNDGFELKST---RKPIEGDQLPDFLAKWEKRKAGDNS---------- 432 Query: 476 RRIKVLRPLRMSFILDKTGLAR-----LEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + + + + + L R + + + +D+L + + Sbjct: 433 WTVPIEKIIEQGYDLSAKNPNRKDEYEHRPALELVQSIKAKEERIMDLLNELEGILEK 490 >gi|325980942|ref|YP_004293344.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosomonas sp. AL212] gi|325530461|gb|ADZ25182.1| Site-specific DNA-methyltransferase (adenine-specific) [Nitrosomonas sp. AL212] Length = 489 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 88/496 (17%), Positives = 167/496 (33%), Gaps = 97/496 (19%) Query: 10 SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLEC------ALEPTRSAV 55 S+++ I + + D + L L+ + L+ + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDRENEWELLQDDYQSP 56 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAI 114 + + D E A F + + +L L + + +Y+ +++ Sbjct: 57 LPEKFRWRNWAADAEGMTGDALKQFLDNDLFPALQQLQAK--GGDPRAYV------IRSV 108 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 FE ++ L+ ++ + ++YE L+R + + A Sbjct: 109 FE-----DAYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--A 161 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231 +F TPR V + +P + + DP CGTGGFL A+ H+ Sbjct: 162 GEFYTPRAVTEFMVRRV----------NPRLGEKIMDPACGTGGFLACAIEHMRKHDVKT 211 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFT 288 + G E +P H +C M++ ++ I+ ++LS+ Sbjct: 212 VDDETQLQASIFGIEKKPLPHLLCTTNMILHGIDVPIT------IRHDNSLSRPLISWTP 265 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +R ++NPPFG ++D +E + R + +D LFL+ + L+ Sbjct: 266 KERVDVVVTNPPFGG---MEEDGIETNFPSAFRTR------ETAD---LFLVLIMQLLKP 313 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GGRAA+VL LF ++ I+ LL+ + IV LP +F T I T L Sbjct: 314 ----GGRAALVLPDGFLF---GEGIKTRIKEKLLQECNLHTIVRLPNGVFSPYTGIKTNL 366 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQI----------LDIY 456 S + G K + + D + Sbjct: 367 LFFSKGTPTRHI---------WFYEHPYPPGVKSYNKTKPMKIEEFDAEAAWWSNEADGF 417 Query: 457 VSRENGKFSRMLDYRT 472 +RE ++ + + Sbjct: 418 KNREANPYAWKVSLQD 433 >gi|283796716|ref|ZP_06345869.1| type I restriction enzyme M protein [Clostridium sp. M62/1] gi|291075600|gb|EFE12964.1| type I restriction enzyme M protein [Clostridium sp. M62/1] Length = 542 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 87/548 (15%), Positives = 191/548 (34%), Gaps = 77/548 (14%) Query: 27 KHTDFGKVILPFTLLRRLECAL---EPTRSAVREKYLAFG--GSNIDLESFVKVAGYSFY 81 ++ VI L + L + + + S + + + + Sbjct: 26 DGNEYK-VITQIFLYKFLNDKFGYEIKKKDSRIASAEKWETAYSELPEDDRLDLLDSLSP 84 Query: 82 NTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKN 139 + L ST + + F I + D ST L++ N Sbjct: 85 DIPRLYPEHLISTLWNQQAKGDFDLIFDSTMVDIADKNIDIFSTQTTKNTKIPLFEKLTN 144 Query: 140 FSGIELHPD-------------------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 F + + ++E++I+ + + ++ TP Sbjct: 145 FVTDDAQRAPFARALVDKLVNFSFEDAFAESYDFFAGVFEYVIKDYNTNGGGVYAEYYTP 204 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + + LL+ L YDP GTG L + + + Sbjct: 205 HAIAVIMARLLVGDRQDLHNIE------CYDPAAGTGTLLMALAHQIGE--------DRC 250 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHY 294 Q+ +++ + +++ L + QG TL S D + ++F Y Sbjct: 251 TIFAQDRSQKSNKMLKLNLILNGL-----VSSLDHAIQGDTLTDPFHMSDDGKSLRQFDY 305 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSML-----FLMHLANKLE 347 + NPPF + + ++ + RF G+P + FL H+ N ++ Sbjct: 306 EVCNPPFNLDFSETRETLAA-----MPARFWAGIPNVPKKKKESMSIYTCFLQHVLNSMK 360 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+AAIVL + L S E ++ + ++ L+ ++++P+++F T + Sbjct: 361 P----NGKAAIVLPTGFL--TAKSSVEGKLLKHIVNERLVYGVISMPSNVFANTGTNVSV 414 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 N K+ KV LI+A+ L + K+ + + I+D +++++ + FS Sbjct: 415 VFFDNSKSS---DKVILIDASKLGEEYQEGNNKKVRLTPSEIDMIVDTFLNKKTVEDFSV 471 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMM 523 + Y ++ + ++ L + E + +L+ QS++ + + K +M Sbjct: 472 AVSYEDIEAKKCSLAAGQYFDVKIEYVELTQEEFESKMSELTSNLQSYFDEGNVLQKEIM 531 Query: 524 QQIYPYGW 531 +Q+ + Sbjct: 532 EQLKRVKY 539 >gi|168183359|ref|ZP_02618023.1| putative type I restriction-modification system, M subunit [Clostridium botulinum Bf] gi|237793995|ref|YP_002861547.1| putative type I restriction-modification system, M subunit [Clostridium botulinum Ba4 str. 657] gi|182673480|gb|EDT85441.1| putative type I restriction-modification system, M subunit [Clostridium botulinum Bf] gi|229263879|gb|ACQ54912.1| putative type I restriction-modification system, M subunit [Clostridium botulinum Ba4 str. 657] Length = 485 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 80/499 (16%), Positives = 180/499 (36%), Gaps = 71/499 (14%) Query: 38 FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 F ++ L+ L + + + + F G +++ + F N + + S Sbjct: 35 FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDRQYLRWSK--FKNIEAGEMYRIVSQE 90 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 ++ D F ++ +L KI I ++ Sbjct: 91 VFPFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNINMN----DKDTK 141 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++YE+L+ + F TPR ++ + L+ P + DP G Sbjct: 142 GDLYEYLLSKIAQAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMG 189 Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 T GFL A ++ + S + + +G +++ + M++ ++ Sbjct: 190 TAGFLVGAEEYLREKHSELFLVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + NI+ +LS+ +++ L+NPPF + + + + + Sbjct: 247 ----NPNIEYKDSLSETNKDREKYTLVLANPPFKGSLDYEAVSADI-----------LKV 291 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LFL L+ GGR A ++ LF + G +IRR +++N+ +E Sbjct: 292 SKTKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLE 345 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 AI+++P+ +F ++T + I + KV + + KR I D+ Sbjct: 346 AIISMPSGVFKPYAGVSTAIIIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDN 401 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 I++ + + + + + + F + V ++ L +E + ++ Sbjct: 402 DISDIIERFSNLDKEEDRKRTEQSFF----VPVDEIRENNYDLSINKYKEIEYE----EV 453 Query: 508 SPLHQSFWLDILKPMMQQI 526 L+ +K + ++I Sbjct: 454 HYDEPKVILERVKKLEKEI 472 >gi|307825359|ref|ZP_07655578.1| nucleotidyltransferase substrate binding protein, HI0074 family [Methylobacter tundripaludum SV96] gi|307733534|gb|EFO04392.1| nucleotidyltransferase substrate binding protein, HI0074 family [Methylobacter tundripaludum SV96] Length = 623 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 94/537 (17%), Positives = 181/537 (33%), Gaps = 84/537 (15%) Query: 38 FTLLRRLECALEPTR--SAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 L+ L+ LE + A E KY E++ L Sbjct: 32 LLFLKFLDG-LEQDKAMEAELEGKKYAFILDLPYRWENWAAPKDND---GKPDHNKALTG 87 Query: 94 TNTRN----NLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIE 144 + R+ L Y+ F A I F ++ L +I + + Sbjct: 88 DDLRDFVDRELFPYLHGFKQKADGPNTIEYKIGEIFGEIKNKIHSGYNLREIIDHIDELR 147 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 +S++YE I+ G ++ TPR ++ ++ P Sbjct: 148 FR-SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAIVQVV----------QPK 195 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGML 260 + ++YD G+ GFL +A +++ G H I +G+E + + + + M+ Sbjct: 196 IGESIYDGAVGSAGFLCEAFDYLTAQGNLTTGDHNILQTRTFYGKEKKSLAYVIAIMNMI 255 Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + +E + NI +TL++ D+ R+ L+NPPFG K K+ Sbjct: 256 LHGIE-------TPNIIHTNTLAENLADIQDKDRYDIVLANPPFGGKERKEVQQNFPI-- 306 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + + + LFL H L GGR +V+ ++ L N S + Sbjct: 307 ------------RTGETAFLFLQHFIKMLR----AGGRGGVVIKNTFLSNTDNAS--VSL 348 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R+ LLE+ + I+ P F + T + + QL RN Sbjct: 349 RKLLLESCNLHTILDCPGGTFQGAGVKTVVLFFEKGAPTRKTWYYQL-------EPGRNM 401 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD--YRTFGYRRIKVLRP------LRMSFI 489 G K +ND + +++ + + S +D + V P + S Sbjct: 402 G-KTNPLNDADLAEFIELQQTNADSPKSWSVDAATIDPATFDLSVKNPNGGEAIIHRSPQ 460 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 +A L+A+ + ++++ ++ M + + K ++ Sbjct: 461 DIMDEIAALDAERPMC--LEISKNYYQELF---MTEDIRWKQRFENYKLALYQLTLA 512 >gi|149199124|ref|ZP_01876163.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Lentisphaera araneosa HTCC2155] gi|149137721|gb|EDM26135.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Lentisphaera araneosa HTCC2155] Length = 494 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 78/494 (15%), Positives = 173/494 (35%), Gaps = 77/494 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95 ++ L+ L+ T+ A + + + ++ +F + +L + + Sbjct: 35 LLFIKGLDE-LQSTKEATASMLDLPVDAPVYSDDQRELRWSAFKELEAQQMFSLFTRVDD 93 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 + + +I + + + F + + + +++ +L ++ + I + Sbjct: 94 SNPGIFQFIKNLHGDNDSAFSRY-MTDALFQVQSPKMLQRVVEMLDEIPM----QDRDTK 148 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +IYE+L+ + + F TPR ++ L L+ P T+ DP G Sbjct: 149 GDIYEYLLSKIATSG--TLGQFRTPRHIIDLMVDLM----------RPTPQDTIIDPASG 196 Query: 216 TGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + GFL A N++ + + +G +++ + M++ +E Sbjct: 197 SCGFLVSANNYLRNNHKEIFTDGALNHHFNNEMFYGHDMDSTMLRIGAMNMMLHGVE--- 253 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGP 326 + NI + +L ++ + L+NPPF +E ++ K Sbjct: 254 ----NPNIDRRDSLGEENKDENSYSLILANPPFKGALDFEACSKSLLAMCK--------- 300 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 +LFL + L+ GGR A+++ LF + +IR L+E Sbjct: 301 ----TKKTELLFLALMIRSLK----LGGRCAVIVPDGVLF--GSSKAHKQIREQLVEKQN 350 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 +E ++++P+ +F ++T + + + E KV + + + KR I Sbjct: 351 LEGVISMPSGVFKPYAGVSTAILLFTKT-DEGGTDKVWFYDMKNDG---FSLDDKRAPIE 406 Query: 446 DDQRRQILDIYVSRENGK-------FSRMLDYRTF----------GYRRIKVLRPLRMSF 488 I+ + R NG+ S + Y+ I Sbjct: 407 GSDLPDIIKSFHERNNGQDGQSRTAQSFFVPKEEIIENGYDLSINRYKEIVYEEVQYDEP 466 Query: 489 ILDKTGLARLEADI 502 + + LE DI Sbjct: 467 EIILDRIDSLEKDI 480 >gi|255261889|ref|ZP_05341231.1| type I restriction-modification system, M subunit [Thalassiobium sp. R2A62] gi|255104224|gb|EET46898.1| type I restriction-modification system, M subunit [Thalassiobium sp. R2A62] Length = 512 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 71/428 (16%), Positives = 151/428 (35%), Gaps = 71/428 (16%) Query: 38 FTLLRRLECA--LEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 ++RL+ +E +S ++ + GS+ E + + F N + + Sbjct: 35 LLFIKRLDDLHTVEERKSEDLGIPMQRNIFPEGSDDKGEPYDNLRWSRFKNFEAREMMRI 94 Query: 92 GSTNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + L S + K FS+ LL K+ + I + Sbjct: 95 VDEHVFPFLRQMGEEGSSYGTHMKD--ARLGFSN-------PNLLAKVVQLLDDIPME-- 143 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 +++E+++ + + F TPR +++L L+ +P T Sbjct: 144 --DRDTKGDVFEYMLGKIA--SAGQNGQFRTPRHIINLMVNLM----------APTPQDT 189 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261 + DP GT GFL + ++ D + HG + + + M + Sbjct: 190 ICDPAAGTCGFLVQSGEYLRDHHPKMLRDKDQRAHFHNDMFHGFDFDSTMLRIGAMNMTL 249 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + ++ +L+++ + R+ L+NPPF + D + + Sbjct: 250 HGVE-------NPDVAYRDSLAEEHGADEGRYSLILANPPFAGSLDYDTTSKDL------ 296 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + K +LF+ + GGRAA+V+ LF + +IR+ Sbjct: 297 -----LKMVKTKKTELLFMALFLRLMRT----GGRAAVVVPDGVLF--GSSKAHKDIRKM 345 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E+ ++AI+ +P+ +F ++ + + + V + + Sbjct: 346 LVEDHKLDAIIKMPSGVFRPYAGVSCAIVVFTKT-GVGGTDDVWFYDMEADGQ---SLDD 401 Query: 440 KRRIINDD 447 KR + DD Sbjct: 402 KRTPLLDD 409 >gi|158313868|ref|YP_001506376.1| N-6 DNA methylase [Frankia sp. EAN1pec] gi|158109273|gb|ABW11470.1| N-6 DNA methylase [Frankia sp. EAN1pec] Length = 775 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 130/346 (37%), Gaps = 42/346 (12%) Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM---SNIYEHLIRRFGSEVSEGAE 175 D S+ + L + + +E PD V I + L+ + + Sbjct: 179 DMSALLGDTSDVRRLVPLIQILDRLEPVPDAGSGDVAPPAGRIADELLAHAATVGGWRSA 238 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + +TP VV A L P ++DP C G FL A +H+ G+ Sbjct: 239 NVVTPPSVVRTAVRL----------TDPVAGDRVHDPFCRAGEFLVGAADHIRSRGTG-- 286 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHY 294 P L GQE+ P + +L+ L +++++ G LS D G F Sbjct: 287 -SPKLTVSGQEINPSLRWLARMNLLLHNL-------GAEDLRAGWALSSPDPQPGGPFEV 338 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L NPPF +D D + G+P + + +L H L GG Sbjct: 339 VLVNPPFNVSGWRDGDQN-------PDSSWRYGVPPGHNANYAWLQHALACLAE----GG 387 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 RA +V+ + A ES IR ++E +++A+VALP LF T+I LW+L Sbjct: 388 RAVVVMPAGA--GSSANLQESAIRAAMVEEGVVDAVVALPPRLFVSTSIPVTLWVLRW-- 443 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 V ++A + R + D+ I + Y +R Sbjct: 444 PSPGHDDVLFVDAHGAGRIVER---NRSELRDEDVDHIAEAYRNRA 486 >gi|50122044|ref|YP_051211.1| subunit M of type I restriction-modification system [Pectobacterium atrosepticum SCRI1043] gi|49612570|emb|CAG76020.1| subunit M of type I restriction-modification system [Pectobacterium atrosepticum SCRI1043] Length = 490 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 157/402 (39%), Gaps = 56/402 (13%) Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 NL + I N + FS ++ LL ++ + I+ + + Sbjct: 89 ILKNLTAPID---KNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLF 144 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +IYE ++R S + A +F TPR V + P + ++ DP CG Sbjct: 145 GDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACG 192 Query: 216 TGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TGGFL A +HV D + +G E + H +C ML+ +E Sbjct: 193 TGGFLACAFDHVKDNYVITTEDHKTLQKQIYGVEKKQLPHLLCTTNMLLHGIEV------ 246 Query: 273 SKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I+ +TL+K ++ ++NPPFG ++D +EK R + Sbjct: 247 PVQIRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ET 297 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 +D LFL + L GRAA+VL LF ++I++ L E + IV Sbjct: 298 AD---LFLQLIIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIV 347 Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 LP +F + T+I T + + + + +V + K + + ++ Sbjct: 348 RLPKGVFNPY-TSIKTNILFFTKGQPTK---QVWFYE--HPYPDGVKNYSKTKPMKFEEF 401 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 + +D + + +G SR + + ++ + + +F LD Sbjct: 402 QTEIDWWGNEADGFASREENKQA---WKVSIDDIIARNFNLD 440 >gi|146281848|ref|YP_001172001.1| type I restriction-modification system, M subunit [Pseudomonas stutzeri A1501] gi|145570053|gb|ABP79159.1| type I restriction-modification system, M subunit [Pseudomonas stutzeri A1501] Length = 440 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 138/387 (35%), Gaps = 54/387 (13%) Query: 98 NNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 NL Y + S +++FE ++ LL ++ Sbjct: 43 QNLHEYSNTPSAFVVRSVFE-----DAYNYMKSGQLLRQVINKIQQGVDFNKAQERHEFG 97 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 N+YE L+R + + A +F TPR V ++ P + + DP CGT Sbjct: 98 NLYEQLLRDL--QNAGNAGEFYTPRPVTEFMVRMV----------DPKLDEKVMDPACGT 145 Query: 217 GGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 GGFLT + H + + +G E +P H + M++ +E Sbjct: 146 GGFLTCTIEHKRSRYVKTAEDERTLQASIYGVEKKPLPHLLATTNMILHGIEV------P 199 Query: 274 KNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I+ +TL++ +R ++NPPFG ++G F + Sbjct: 200 NQIRHDNTLARPLISWGPKERVDCIVANPPFGGME-----------EDGIETNFPAAF-R 247 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 + + LFL+ + + L+ GGRAA+VL LF S I+ LL + I Sbjct: 248 TRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLTECNLHTI 300 Query: 391 VALPTDLF--FRTNIATYLWILSNRKTEERRGKV--QLINATDLWTSIRNEGKKRRIIND 446 V LP +F + T I T L + + Q ++ R + + + Sbjct: 301 VRLPNGVFNPY-TGIKTNLLFFTKGTPTKEVWFYEHQYPAGVKNYSKTRPMRIEEFAVEE 359 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTF 473 D + +R +F+ + Sbjct: 360 AWWGSEADGFAARVENEFAWKVSLDEL 386 >gi|289423012|ref|ZP_06424832.1| type I restriction-modification system, M subunit [Peptostreptococcus anaerobius 653-L] gi|289156586|gb|EFD05231.1| type I restriction-modification system, M subunit [Peptostreptococcus anaerobius 653-L] Length = 292 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 34/314 (10%) Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L A + + +GQE+ T+ +C M + + D Sbjct: 5 GSGSLLLKAEKIL------GRDKIRNGFYGQEINITTYNLCRINMFLHDIGFDKF----- 53 Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 NI TL + F +SNPP+ KW D + + RF P L Sbjct: 54 NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGDNNPL-----LINDPRFSPAGVLAPK 108 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S + F+MH + L G AAIV ++ G A E +IR++L++N+ ++ I+ Sbjct: 109 SKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EKKIRKYLIDNNFVDCII 161 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T+IAT + ++ K + K I+A++ + N + D + Sbjct: 162 QLPPNLFFGTSIATCIMVMKKNKAD---NKTLFIDASNECVKVTN----NNKLTQDNMDK 214 Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 I++ + +R FS + Y + + + + ++ + +++ Sbjct: 215 IVECFANRSEIAHFSHLATYDEISENDYNLSVSTYVEAEDTREKIDIVKLNAEIKEIVAR 274 Query: 511 HQSFWLDILKPMMQ 524 Q +I K + + Sbjct: 275 EQVLRDEIAKIIAE 288 >gi|288560185|ref|YP_003423671.1| type I restriction-modification system M subunit HsdM [Methanobrevibacter ruminantium M1] gi|288542895|gb|ADC46779.1| type I restriction-modification system M subunit HsdM [Methanobrevibacter ruminantium M1] Length = 634 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 81/420 (19%), Positives = 152/420 (36%), Gaps = 55/420 (13%) Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAI--FEDFDF 120 ++ E F + S + S+ N E Y + F D+ + F+ + Sbjct: 194 DALEKELLSDPNKNIFLDDSPLNESSSIPLNEAP-FEEYASMELFLDDIAPVEEFDSMEL 252 Query: 121 ---SSTIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + LE + + + +E+L+ +F S+ + Sbjct: 253 SNKENIVTGLENPNHPNSLVNEGWNDRSYDSYRIQKQYSIGDAFEYLLDKFSLNASK-SA 311 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 DF TP DV L + L+ I ++YDP CG+ L + HV Sbjct: 312 DFYTPNDVSVLVSKLVATNK--------RAIDSVYDPCCGSSSMLLELNKHV-------- 355 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHY 294 + + GQE+ + + M++ + +I+QG +L G +F Sbjct: 356 --SLNLICGQEVNAYYYNISRQNMILHNIHF-----KDFDIKQGDSLDSPHHIGYDKFDV 408 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +S PF W K + + L F+ H+ L+ G Sbjct: 409 VVSQIPFNVSWTAKKSFLNDQRFKEYN-----ALAPRVKAEYAFIQHMLYHLDDD----G 459 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413 ++ LF E IR+ ++ + ++A++ LP+++F+ TN + I + Sbjct: 460 IMVVIAPHGVLFRSA---SEESIRKIIVSKMNYLDAVIGLPSNMFYSTNSPACVLIF--K 514 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 K V I+A+ + N+ K R + + +I+ YVSR K+SR + R Sbjct: 515 KNRRYDDDVLFIDASKNF----NKIKLRNNLRKEDINKIVGTYVSRAEVDKYSRRVSLRE 570 >gi|148378678|ref|YP_001253219.1| type I restriction enzyme M subunit [Clostridium botulinum A str. ATCC 3502] gi|153930941|ref|YP_001383062.1| putative type I restriction-modification system, M subunit [Clostridium botulinum A str. ATCC 19397] gi|153936955|ref|YP_001386611.1| putative type I restriction-modification system, M subunit [Clostridium botulinum A str. Hall] gi|148288162|emb|CAL82230.1| type I restriction enzyme M subunit [Clostridium botulinum A str. ATCC 3502] gi|152926985|gb|ABS32485.1| putative type I restriction-modification system, M subunit [Clostridium botulinum A str. ATCC 19397] gi|152932869|gb|ABS38368.1| putative type I restriction-modification system, M subunit [Clostridium botulinum A str. Hall] Length = 485 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 79/499 (15%), Positives = 180/499 (36%), Gaps = 71/499 (14%) Query: 38 FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 F ++ L+ L + + + + F G + +++ + F N + + S Sbjct: 35 FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDKQYLRWSK--FKNEPAGEMYRIVSEE 90 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 ++ D F ++ +L KI + I ++ Sbjct: 91 VFPFIKDIHGDEQSAYSKYMSDAMF-----KIPTPLMLSKIVDSIDNINMN----DKDTK 141 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++YE+L+ + F TPR ++ + L+ P + DP G Sbjct: 142 GDLYEYLLSKIAQAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMG 189 Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 T GFL A ++ + + + + +G +++ + M++ ++ Sbjct: 190 TAGFLVGAEEYLRENHNDLFFVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + NI+ +LS+ +++ L+NPPF + + + + + Sbjct: 247 ----NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADL-----------LKV 291 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LFL L+ GGR A ++ LF + G +IRR +++N+ +E Sbjct: 292 SKTKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLE 345 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 AI+++P+ +F ++T + I + KV + + KR I D+ Sbjct: 346 AIISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDN 401 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 I++ + + + + + F + V + L +E + ++ Sbjct: 402 DMPDIIERFSNLDKEEDRNRTEQSFF----VPVEEIRENDYDLSINKYKEIEYE----EV 453 Query: 508 SPLHQSFWLDILKPMMQQI 526 L+ +K + ++I Sbjct: 454 VYDEPKVILERVKKLEKEI 472 >gi|327403690|ref|YP_004344528.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] gi|327319198|gb|AEA43690.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] Length = 510 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 78/447 (17%), Positives = 159/447 (35%), Gaps = 75/447 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96 ++ L+ +R + + + F + +L + Sbjct: 35 LIFIKDLDET------EIRSELKS--KHGFKYTPIFSIEQQPF----RWKNLKEMDVNAR 82 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIAR-----LEKAGLLYKICKNFSGIELHPDTVP 151 + + + +++ +D S R + K +L ++ + I++ Sbjct: 83 HDVFTNTVDGVFPFIRSLGKDKSLFSVYMRGATFGISKPMVLDQVMEKLGNIDMSNQ--- 139 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 +IYE+L+ + E A F TPR ++ L L+ P + T+ D Sbjct: 140 -DTKGDIYEYLLSKL--EGGGTAGQFRTPRHIIKLMVELM----------RPTLEDTICD 186 Query: 212 PTCGTGGFLTDAMNHVADCG------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 P+CG+ GFL A ++ + +G E + + + + +E Sbjct: 187 PSCGSAGFLVGAKEYIDKHNSVTDIDRAAHHINTEMFNGMEFDATMLRIASMNLYLHGVE 246 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 NI +SKD + L+NPPF K DKD++ KN Sbjct: 247 -------EPNIIDVDAVSKDNTISDAYTLVLANPPF--KGTIDKDSISAGLKNVTD---- 293 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 S +LFL + +L+ GGR A+++ LF +G IR ++ N+ Sbjct: 294 -----TSKTELLFLALMLRQLKS----GGRCAVIVPDGVLF--GSGKAHKSIREEIVANN 342 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 +EA++++P+ +F ++T + I + V + + ++ KR ++ Sbjct: 343 KLEAVISMPSGVFKPYAGVSTAIMIFTKT-ETGGTDNVWFYD---MQADGKSLDDKRNVL 398 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYR 471 ++ + + G S L Sbjct: 399 VSEEI------FDAFAFGDVSETLTKE 419 >gi|27365370|ref|NP_760898.1| type I restriction-modification system, DNA-methyltransferase subunit M [Vibrio vulnificus CMCP6] gi|27361517|gb|AAO10425.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Vibrio vulnificus CMCP6] Length = 496 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 95/496 (19%), Positives = 179/496 (36%), Gaps = 58/496 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E L I + + + L + + Sbjct: 33 LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ A N + FS ++ LL ++ + I+ D+ + + Sbjct: 88 PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + A +F TPR V L P + + DP CGTG Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFL + +HV + + HG E + H +C+ M++ +E Sbjct: 195 GFLACSFDHVKENYVTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248 Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 I+ G+TL+K + +NPPFG ++D +EK R + +D Sbjct: 249 QIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 LFL + L+ GRA +VL LF ++I++ L E + IV L Sbjct: 300 ---LFLQLIVEVLDKE----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349 Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P +F + T I T + + + + +V + K + + ++ +Q Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + + +G SR+ + ++ + + +F LD + E + + Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQDEVVSHDPEELLAN 460 Query: 512 QSFWLDILKPMMQQIY 527 +K + Q+ Sbjct: 461 YQQQQQDIKALRDQLK 476 >gi|88812208|ref|ZP_01127459.1| Putative restriction modification enzyme M subunit [Nitrococcus mobilis Nb-231] gi|88790459|gb|EAR21575.1| Putative restriction modification enzyme M subunit [Nitrococcus mobilis Nb-231] Length = 483 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 142/443 (32%), Gaps = 56/443 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + I E + + +L + Sbjct: 33 LLFLKIFDA-----QEEELALRYDDYQPPIPEELLWRSWAADPEGITGEALLEFVNNALF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ A+ N + F+ ++ LL ++ ++ + Sbjct: 88 PQLKRLRATPQTNPRGFVAREVFADAFNYMKNGTLLRQVVNRIEAGIDFHSAKERHLLGD 147 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V ++ P + + DP CGTG Sbjct: 148 IYEQILKDLQSAGN--AGEFYTPRAVTQFMVDII----------DPQLGEQVMDPACGTG 195 Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFLT + H+ + G E + H +C ML+ LE Sbjct: 196 GFLTCTVEHIRKHYVQTVAAEATLQEQVQGFEKKQLPHLLCTTNMLLHGLEV------PT 249 Query: 275 NIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I+ +TL +D +R L+NPPFG ++G F + Sbjct: 250 RIRHDNTLARPLRDWGPRERVDAVLTNPPFGGME-----------EDGTELNFPQAT-RT 297 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + LFL + L+ GRAAIVL LF ++I+ LL + IV Sbjct: 298 RETADLFLQLVIQILKP----NGRAAIVLPDGTLFGEGVK---TKIKEKLLTECNLHTIV 350 Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 LP +F + T I T L + + + K + I + Sbjct: 351 RLPNGVFNPY-TGIKTNLLFFTKGEPTTEVWYY-----EHPYPPGYKSYSKTKPIRITEF 404 Query: 450 RQILDIYVSRENGKFSRMLDYRT 472 + +R+ + + Sbjct: 405 DAEKAWWHARKENAQAWRVSIDE 427 >gi|313673807|ref|YP_004051918.1| site-specific DNA-methyltransferase (adenine-specific) [Calditerrivibrio nitroreducens DSM 19672] gi|312940563|gb|ADR19755.1| Site-specific DNA-methyltransferase (adenine-specific) [Calditerrivibrio nitroreducens DSM 19672] Length = 466 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 98/537 (18%), Positives = 177/537 (32%), Gaps = 81/537 (15%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 + + N +W L D+G I T L + + ++ N Sbjct: 1 MSDIVNKLWGMCHTLR--HDGIDYGDYIEQLTYLLFI---------KMADEKGIELPENC 49 Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127 D E+ +G + + L L K + D F+ ++ + Sbjct: 50 DWETLKNKSGTELTDHYLWVLQKLRDE-----------------KGLLGDI-FAQSMPKF 91 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L KI + ++ V + +E L+ + SE +GA + TPR ++ Sbjct: 92 NNPVNLKKIITMIDAEDW--SSLGVDVKAQAFEGLLEKAASEGKKGAGQYFTPRVLIQSI 149 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPILV 241 ++ + DP CGTGGFL A + + K Sbjct: 150 VRVMKP------DPLVNKEMKICDPACGTGGFLVAAYEWLIEKTGGAIPVDEIKRIKENT 203 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQEL + + + + L+ I G T+ + G+R+ L+NPPF Sbjct: 204 YYGQELVARPRRLALMNLFLHGLK--------PTIYLGDTIYEPD-RGERYDIVLTNPPF 254 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G K + F S+ + F+ H+ L+ GGRAAIVL Sbjct: 255 GTKGAGQIPTRDD---------FTVAT---SNKQLNFVQHIMTILKK----GGRAAIVLP 298 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 + LF +A E+ + ++E+ + I+ LP F N + L E Sbjct: 299 DNCLFEDKA----VEVFKIVMEDCNLHTILRLPRGTFVPYANAQANVVFLQKGIPTE--- 351 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 KV + + +I + KK R + + Y NG R+ +R + Sbjct: 352 KVWIYDCRS---NIPSITKKDRPLTAEMFADFEQCYGKDPNGNSPRIDQGPEGRFRAFTI 408 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 + LD L + + P + + + + + ++ Sbjct: 409 DEIKERGYKLDIKWLK--DDTLDDPNDLPEPSDLIAEAVSELEAVVDELNEINNLLE 463 >gi|78188778|ref|YP_379116.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Chlorobium chlorochromatii CaD3] gi|78170977|gb|ABB28073.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Chlorobium chlorochromatii CaD3] Length = 486 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 89/449 (19%), Positives = 167/449 (37%), Gaps = 66/449 (14%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGS 93 LR L+ + A + Y + K A + S + + L Sbjct: 33 LFLRYLDELEKEKADAAALQGKTYQFIIDKVFRWNYWAMPKTADGKLDHHSVMTGTDLVQ 92 Query: 94 TNTRNNLESYIASFS----DNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ASF +N K+I +S +++ L +I + + Sbjct: 93 -FVDLQLFPYLASFKLKAIENPKSIEYKIGEIYSELKNKVKSGYNLREIIEMIDTLPFGT 151 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S++YE I+ G + TPR ++ ++ +P + Sbjct: 152 SK-DKHELSHLYETKIKNMG-NAGRNGGQYYTPRPLIRAIINVV----------NPQIGE 199 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 +YD CG+ GFL +A +++ + + K +G+E + + + V M++ Sbjct: 200 KVYDAACGSAGFLCEAYSYMYERMEKTTTNLKTLQENTFYGKEKKNLAYIIGVMNMILHG 259 Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + NI +TL++ D+ R+H L+NPPFG K K+ Sbjct: 260 IE-------APNIFHTNTLTENIRDIQEKDRYHVILANPPFGGKERKEVQQNFDI----- 307 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 K + + LFL H L+ GGRA IV+ ++ L N S +R+ Sbjct: 308 ---------KTGETASLFLQHFIKSLK----AGGRAGIVIKNTFLSNADNAS--VSLRKH 352 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LLE+ + I+ +P F + T + + + ++ QL + K Sbjct: 353 LLESCNLHTILDMPAGTFLGAGVKTVVLFFTKGEPTKKIWYYQLDTGRSMG--------K 404 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLD 469 +NDD ++ + + + S +D Sbjct: 405 TNPLNDDDMQEFKQLQKTLADSDNSWTVD 433 >gi|198282969|ref|YP_002219290.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666304|ref|YP_002425172.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247490|gb|ACH83083.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518517|gb|ACK79103.1| type I restriction-modification system, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 489 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 167/468 (35%), Gaps = 71/468 (15%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ + LE + +L + + E A F N + L Sbjct: 34 MFFLKIFDDREAELMLLEDDYKSPLPNHLRWRAWATNPEGMTGDALADFVNVQLFPYLKE 93 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 T + + +++FE ++ L+ ++ I+ + Sbjct: 94 RLPTAGAQGKRAQV------VRSVFE-----DAYNYMKSGTLMRQVINKICEIDFNNSG- 141 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +IYE ++R S + A +F TPR V + +P + T+ Sbjct: 142 DRHTFGSIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRV----------NPRLEETVL 189 Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP CGTGGFLT A++H + + + G E + H + V M++ +++ Sbjct: 190 DPACGTGGFLTCAIDHKREHYVKTREDEETLVNTIRGFEKKALPHMLAVTNMILHGIDTP 249 Query: 268 PRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 I+ +TLS KD R + ++NPPFG ++G F Sbjct: 250 TH------IRHDNTLSRPYKDYGNADRVNVIITNPPFGGME-----------EDGIENNF 292 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + + + LF+ + L+ GRAAIVL LF + +++ LLE Sbjct: 293 PAHL-RTRETADLFMALVIKLLKDQ----GRAAIVLPDGFLFGEGMK---TRLKQILLEE 344 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 + IV LP +F T I T L + K E + K + Sbjct: 345 CNLHTIVRLPNGVFAPYTGIKTNLLFFTKGKPTEHVWYY-----EHPYPEGVKNYNKTKP 399 Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 + ++ + + +G +R+ + ++ V + ++ LD Sbjct: 400 MRFEEFETEIAWWGDEADGFKARVQTEQA---WKVPVADIVARNYNLD 444 >gi|10717099|gb|AAG22013.1|AF288037_2 putative HsdM [Streptococcus thermophilus] Length = 535 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 91/542 (16%), Positives = 212/542 (39%), Gaps = 72/542 (13%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAF-GGSNIDLESFVKVAGYSF-Y 81 + ++ +L + L + L V + Y S D + ++ G S + Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFLYEAQNVDSENTYEHLVSMSEEDYDWLLEDIGTSTAW 85 Query: 82 NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 + TL ++ E+ + + + IF +T RL L+ I Sbjct: 86 MKPNQFIETLHRKQNESDFYETFENTLNQIAIDNNDIFSVHTDRNTAIRLFDERLITDII 145 Query: 138 KNFSGIELHPDTVPD----------------RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + S ++ + S I+E++I+ + + ++ TP Sbjct: 146 PDSSKRNEVAKSIINLLARVKFDEAIFSQGFDFFSTIFEYMIKDYNKDGGGTYAEYYTPH 205 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + +L+ D+ G +++P + + S + Sbjct: 206 SVAKIIADILVGNDNPQNVRIYGTHLLVWEPC-------------LMNLASRIGV-DKAT 251 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 + Q++ ++ + +++ L+ NI +G+T+ ++ ++ Y +SNPPF Sbjct: 252 VYSQDISQKSSNLLRFNLILNGLQHSIH-----NIVEGNTILRNRHP-EKMDYIVSNPPF 305 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLELPPNGGG 354 + + +D VE + E RF G+P S + LF+ H+ L+ G Sbjct: 306 KLDFSEWRDQVETLPEASE--RFFAGVPKTPKSKKNSMAIYELFVQHIIYSLKSD----G 359 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + F + +IR+ L++N ++ +V++P+++F T + + + Sbjct: 360 QAAVVLPTG--FITAQNGIDKKIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK- 416 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ +E + FS + Y Sbjct: 417 ---NKGDVVLIDASNLGTKVKESKNQKTVLSPEEEQKIVETFIQKEAVEDFSVTVSYEDI 473 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQIYPY 529 + + +D + + + KLS L Q + K + +Q+ Sbjct: 474 KEKNYSLSAGQYFDIKIDYVDITAEDFEAKMTAFQNKLSDLFQQSH-ALEKEIEEQMKGL 532 Query: 530 GW 531 + Sbjct: 533 KY 534 >gi|256617125|ref|ZP_05473971.1| type I restriction-modification system M subunit [Enterococcus faecalis ATCC 4200] gi|256596652|gb|EEU15828.1| type I restriction-modification system M subunit [Enterococcus faecalis ATCC 4200] Length = 304 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 136/312 (43%), Gaps = 34/312 (10%) Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G + + N++ P + HGQEL T+ + +++ ++++ Sbjct: 1 MGSGSLMLNVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM---- 49 Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 N++ G TL+KD T + + + + NPP+ W D ++ R+G L Sbjct: 50 -NLRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPK 103 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G AIVL LF G A E IR+ LLE+ I A++ Sbjct: 104 SKADFAFLLHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVI 156 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 +P +LFF T+I T + +L + V I+A+ + GK + ++++ ++ Sbjct: 157 GMPANLFFGTSIPTTVIVLKKNRQNR---DVLFIDASREFVK----GKNQNKLSEENIQK 209 Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 IL+ Y R++ + ++ + + + P + ++ + + +K+ Sbjct: 210 ILENYAERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQE 269 Query: 511 HQSFWLDILKPM 522 Q ++L+ + Sbjct: 270 QQVLEKELLEAI 281 >gi|110679502|ref|YP_682509.1| type I restriction enzyme methyltransferase subunit, putative [Roseobacter denitrificans OCh 114] gi|109455618|gb|ABG31823.1| type I restriction enzyme methyltransferase subunit, putative [Roseobacter denitrificans OCh 114] Length = 480 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 90/510 (17%), Positives = 176/510 (34%), Gaps = 87/510 (17%) Query: 39 TLLRRLECALEPTRSAVREKYLAF-----------------GGSNIDLESFVKVAGY-SF 80 L+ L+ + + + D + + +F Sbjct: 33 LFLKYLDDMEQEREDEAELEGKDYTPTLPNDMRWKSWASPKNPDGTDRKDVLTGEDLITF 92 Query: 81 YNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139 NT + +L T + Y I FS + L + + Sbjct: 93 VNTELFPTLKKYREDATSPDTIEY------KIGEI-----FSEITNKFRSGYSLRDVLEI 141 Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 G+E + +S++YE I+R G ++ TPR ++ ++ Sbjct: 142 VDGLEFNTQEAK-HELSDLYESRIKRMG-NAGRNGGEYYTPRPLIRAMIKVV-------- 191 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCV 256 P + T+YD CG+ GFL +A H+ S + +GQE + + + + Sbjct: 192 --DPKIGETVYDGACGSAGFLCEAYAHMLTTDISASDYSTLQTRTFYGQEKKSLAYIIGI 249 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 M++ + + NI++ +TL++ D+ R L+NPPFG + Sbjct: 250 MNMILHGI-------TAPNIRRTNTLTENVMDIQEKDRHDVILANPPFGSGERPEVQQNF 302 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 K + + LF+ H KL GGRAA+V+ ++ L NG A Sbjct: 303 PI--------------KSGEMAYLFMQHFIRKLR----AGGRAAVVIKNTFLSNGDA--- 341 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 + +RR LLE + ++ P +F + T + + + L Sbjct: 342 -AALRRELLETCDLHTVLDCPAKVFQGAGVKTVVLFFEKGRKTRKTWYYAL-------DP 393 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 R+ G K + DD+ + L++ ++ + S + + ++ F ++ Sbjct: 394 GRSLG-KGSPLRDDELAEFLELQKTKADSPKSWTVAREDI--DAETMDMSVKNPFAPEEA 450 Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMM 523 L E I + L+ ++ M+ Sbjct: 451 PLRSPEEIIEDMLARDKETAAILEDIRGML 480 >gi|189423705|ref|YP_001950882.1| N-6 DNA methylase [Geobacter lovleyi SZ] gi|189419964|gb|ACD94362.1| N-6 DNA methylase [Geobacter lovleyi SZ] Length = 545 Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats. Identities = 83/485 (17%), Positives = 178/485 (36%), Gaps = 71/485 (14%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85 +F I+ L + L + K + + A Sbjct: 29 DGNEFK--IITQVFLYKFLNDKFAFEAKRINPKLAKAENWEQAISTLQPDALEMLQLQMG 86 Query: 86 YSLSTLGSTN------TRNNLESYIASFSDNAKAI-FEDFDF-----------------S 121 + L + +R N + F D + I + D S Sbjct: 87 ADTARLKPEHFVAHLFSRQNAPEFAKLFDDTLRDIAVSNNDIFAVKTDGGTKVTLFDRVS 146 Query: 122 STIARLEKAGLL-YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I + K + + ++E+LI+ + + ++ T Sbjct: 147 EFITDVSKRDAFCRAVINKLVEFSFERIFTQKYDFYAALFEYLIKDYNKDSGGKYAEYYT 206 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P V + A+L+ + + YDP+ G+G L + + + + Sbjct: 207 PHAVAKIMAAILVPEEQ----RGTVKNVSCYDPSAGSGTLLMNLAHAIGE--------QR 254 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295 Q++ ++ ++ L + NI QG+TL+ K+F Y Sbjct: 255 CAIFSQDISQKSSSLLR-----LNLILNNLVHSIPNIIQGNTLTHPYHRNGKALKKFDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LFLMHLANKLEL 348 +SNPPF + ++ ++ RF G+P I ++ LFL H+ L+ Sbjct: 310 VSNPPFKMDFSDFRNELDA---TEHQERFFAGVPNIPKQAVEKMAIYQLFLQHIIYSLKP 366 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GGRAA+V+ + F + +IR L++ ++ +V++P+++F T + Sbjct: 367 ----GGRAAVVVPTG--FITAQSGIDRKIREKLVDERMLAGVVSMPSNIFATTGTNVSIL 420 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467 + + KV LI+A+ L T +++ ++ ++++++ +I+ + SR+ + FS + Sbjct: 421 FID----ASNKDKVVLIDASSLGTKVKDGKNQKTLLSEEEEDRIIATFNSRQAVEDFSVV 476 Query: 468 LDYRT 472 ++Y+ Sbjct: 477 VEYQE 481 >gi|320321658|gb|EFW77757.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. glycinea str. B076] Length = 494 Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 147/460 (31%), Gaps = 72/460 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + R E S I + + +L N Sbjct: 33 LLFLKIFDD-----RELEWELMDDNYKSPIPDSCRWRTWAADPEGMTGDALKDFIDNNLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ + +S A F ++ LL ++ N Sbjct: 88 PQLQN-LHEYSTTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQEGVDFNKAQERHEFGN 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE L+R + A +F TPR V +++ P + L DP CGTG Sbjct: 147 LYEQLLRDLQEAGN--AGEFYTPRPVTEFMVSMV----------DPKLDEKLMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFLT + H + + G E +P H + M++ +E Sbjct: 195 GFLTCTIEHKRSRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIEV------PS 248 Query: 275 NIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I+ +TLSK +R H ++NPPFG ++G F + Sbjct: 249 QIRHDNTLSKPLISWGPSERVHCIVANPPFGGME-----------EDGIETNFPAAF-RT 296 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + LFL+ + L+ GRAA+VL +F S I+ LL + IV Sbjct: 297 RETADLFLVLIMQLLKD----NGRAAVVLPDGFMFGDGIKS---RIKEKLLTECNLHTIV 349 Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQ 448 LP +F + T IAT L + ++ + G K + Sbjct: 350 RLPKGVFNPY-TPIATNLLFFTKGTPTQQ---------VWFYEHQYPAGVKNYNKTRPMR 399 Query: 449 RRQI----------LDIYVSRENGKFSRMLDYRTFGYRRI 478 + D + +R +F+ + R Sbjct: 400 IEEFAVEEAWWGSEADGFAARVENEFAWKVSIDELQARNW 439 >gi|262067420|ref|ZP_06027032.1| putative type I restriction-modification system, M subunit [Fusobacterium periodonticum ATCC 33693] gi|291378863|gb|EFE86381.1| putative type I restriction-modification system, M subunit [Fusobacterium periodonticum ATCC 33693] Length = 498 Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats. Identities = 91/507 (17%), Positives = 184/507 (36%), Gaps = 69/507 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ E + ++ FG + + N + R Sbjct: 35 LIFMKRLDQE-EQRKEKEQKLGSIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDKVR 93 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156 N +I + ++ ++F + + I ++ +L I +P V D Sbjct: 94 NEAFEFIKNLDEDKNSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++YE+L+ + + F TP+ ++++ L+ P + + DP CGT Sbjct: 153 DLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200 Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 GFL ++ ++ K + HG + + + +L+ ++ Sbjct: 201 SGFLVSSIEYIKKNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMK--- 257 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + +++ +LS D + L+NPPF K +V++ + L R + Sbjct: 258 ----TPKLKRIDSLSTDYSEENEYTLILANPPF-------KGSVDEALLSNTLTR----V 302 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LF L+ GGRAA+++ LF A + +R+ L+EN+ +E Sbjct: 303 AKTKKTELLFNALFLRLLK----IGGRAAVIVPDGVLF--GASNAHRNLRKELIENNQLE 356 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 AI+++P+ +F ++T + I + + V + T + KR + ++ Sbjct: 357 AIISMPSGVFKPYAGVSTGILIFTKT-GKGGTDNVWFYDMTADGY---SLDDKRNPVEEN 412 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTF----------------GYRRIKVLRPLRMSFILD 491 I++ + + EN K + D F Y+ I + + Sbjct: 413 DIPDIMERFSNLENEKDRKRTDKSFFVPKQEIIDNDYDLSINKYKEIVYEKVEYEEPKVI 472 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDI 518 L L I KL L DI Sbjct: 473 LEKLEELSKSID-EKLKELKVMLDEDI 498 >gi|121594953|ref|YP_986849.1| N-6 DNA methylase [Acidovorax sp. JS42] gi|120607033|gb|ABM42773.1| N-6 DNA methylase [Acidovorax sp. JS42] Length = 492 Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats. Identities = 93/502 (18%), Positives = 176/502 (35%), Gaps = 69/502 (13%) Query: 38 FTLLRRLECA---LEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ + LE TR ++L + D E A F + + Sbjct: 34 LLFLKVFDALEEELELTRDDYQSPMAEHLRWRHWAADAEGMTGEALLDFVDKQLFPALKG 93 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 S + + N Y+ + +FE ++ LL ++ + I+ Sbjct: 94 LSADPQRNPRGYV------VRGVFE-----DAYNYMKSGHLLRQVVNKLNAIDF-NRQAE 141 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 +++YE ++R S + A +F TPR V + +P + ++ D Sbjct: 142 RHQFNDLYEKILRDLQSAGN--AGEFYTPRAVTQFMVDM----------TNPQLGESVMD 189 Query: 212 PTCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P GTGGFL A+ H+ + + G E + H +CV +L+ +E Sbjct: 190 PATGTGGFLVCAIEHLRKQVHNAEQEAVLQNSIRGVEKKQLPHMLCVTNLLLHGIEV--- 246 Query: 270 RDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I +TL +D R + L+NPPFG E +A F Sbjct: 247 ---PSQIVHDNTLARPLRDYTAADRVNVILTNPPFGGIEEPGIEAG-----------FPA 292 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + + + + LFL+ + + L+ GGRAA+VL LF + I+ LL++ Sbjct: 293 DV-RTKETADLFLVLIQHLLKP----GGRAAVVLPDGFLFGEGVK---ARIKEQLLQHCN 344 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 + IV LP +F T I T L + + + + K + I Sbjct: 345 LHTIVRLPGGVFAPYTGIKTNLLFFTKGQPTQHIWYY-----EHPYPQGVKTYNKTKPIR 399 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 D+ + + ++G F+ ++ ++ + + + LD+ E Sbjct: 400 IDEFDAEKAWWGTEQDG-FAARVENE--RAWKVGIDQIKAAGYNLDQKNPHIGEQQSHDP 456 Query: 506 KLSPLHQSFWLDILKPMMQQIY 527 + + + ++ Sbjct: 457 DALLADYARLQAEAQALRDELK 478 >gi|254503222|ref|ZP_05115373.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11] gi|222439293|gb|EEE45972.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11] Length = 511 Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats. Identities = 71/407 (17%), Positives = 142/407 (34%), Gaps = 62/407 (15%) Query: 35 ILPFTLLRRLECA--LEPTR----SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 I +R L+ LE + E+ + G++ + + F + + + Sbjct: 32 ITYLLFMRGLDDIQTLEERKATRFDKPVERVIFPDGNDPRDRPYSDLRWSRFKDKAPAEM 91 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + S + L +A + F + LL K+ S I + Sbjct: 92 FEIVSEHVFPFLRE-LAGNDTAHAEHMKGARF-----TIPTPALLAKVVDLLSEIPME-- 143 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++YE+++ + + F TPR ++ L L P T Sbjct: 144 --DRDTKGDLYEYMLAKIA--SAGQNGQFRTPRHIIQLMVEL----------TRPTPKDT 189 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP GT GFL A ++ + K + HG + + + M + Sbjct: 190 ICDPAAGTAGFLVAAGEYLREKNPELFRDEDLRKHFHEGMFHGYDFDATMLRIGSMNMQL 249 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E +I+ +L++D + L+NPPF + + A + Sbjct: 250 HGIEG-------GDIRYKDSLAEDHAGDTDAYSLILANPPFAGSLDYETTAKDL------ 296 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + K +LF+ L+ GGRAA+++ LF + E+RR Sbjct: 297 -----LKIVKTKKTELLFMALFLKLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRM 345 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426 L+E+ ++ I+ LP+ +F ++T + + + + V + Sbjct: 346 LVEDHKLDGIIKLPSGVFKPYAGVSTAIVLFTKTNSG-GTHHVWFYD 391 >gi|126031631|pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M Protein (Np_813429.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution gi|126031632|pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M Protein (Np_813429.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution Length = 445 Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats. Identities = 85/465 (18%), Positives = 151/465 (32%), Gaps = 78/465 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRSAVREK-Y 59 + + SL +W A L F I T L L + V Sbjct: 5 NSSTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFL----KXDAENVEXFGE 55 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + + + G E +L L +NL I Sbjct: 56 ESAIPTGYQWADLIAFDGLDLVKQYEETLKLLSE---LDNLIGTI--------------- 97 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 ++ +++K L K+ + V IYE ++ + G + GA + T Sbjct: 98 YTKAQNKIDKPVYLKKVITXIDEEQWL--IXDGDVKGAIYESILEKNGQDKKSGAGQYFT 155 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-- 237 PR ++ + +P T+ DP CGTGGFL A ++ + + Sbjct: 156 PRPLIQAXVDCI----------NPQXGETVCDPACGTGGFLLTAYDYXKGQSASKEKRDF 205 Query: 238 -PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 HG + P + + + + +D I +L K+ L Sbjct: 206 LRDKALHGVDNTPLVVTLASXNLYLHGIGTDRSP-----IVCEDSLEKE--PSTLVDVIL 258 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG + D + + + FL H L+ GGRA Sbjct: 259 ANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHXXLXLKT----GGRA 303 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 A+VL + LF A GE+ IR+ LL++ + I+ LPT +F+ + + S + Sbjct: 304 AVVLPDNVLFEAGA--GET-IRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQPT 360 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + ++ + + + + + Y +R Sbjct: 361 K---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVE 398 >gi|20807981|ref|NP_623152.1| Type I restriction-modification system methyltransferase subunit [Thermoanaerobacter tengcongensis MB4] gi|20516555|gb|AAM24756.1| Type I restriction-modification system methyltransferase subunit [Thermoanaerobacter tengcongensis MB4] Length = 507 Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 168/468 (35%), Gaps = 67/468 (14%) Query: 6 GSAASLANFIWKNAEDLWGD------FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 + SLAN IW+ + + D ++ + + LR L+ E A + Sbjct: 5 QTRESLANEIWRACDIMRRDNNCTGIM---EYVEHLAWLLFLRFLDAQ-EEEWEAQAQIA 60 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDF 118 ID E + + T ++ L + L Y+ S + + Sbjct: 61 GRPYTPIIDSEY-----RWRHWATKDWPADELLA-FVHGRLIPYLRSLGGDPLRETIRSL 114 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + L + + + I H +S +YE L+RR G + A +F Sbjct: 115 FSERNVIVCASGYNLKDVIQIVNEINFH-SQDDIFTVSQVYEELLRRLG-NENRLAGEFY 172 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHK 235 TPR VV L+ P + +YDP CGT GFL +A + H+ Sbjct: 173 TPRPVVRFVVELV----------DPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHR 222 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHY 294 I GQE +P + + M++ + + + +TL ++ +RF Sbjct: 223 ILQERTFFGQEKKPVPAFLGLVNMMLHGV-------TVPRVMRRNTLEENIRNVSERFDV 275 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGG 353 ++NPPFG + P S+ +LFL H+ KL+ G Sbjct: 276 VVTNPPFGGTEGRHIQQNF---------------PIQSNATELLFLQHIMKKLKP--RDG 318 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 R +V+ LF G A +E++R LLE + +V+LP F +++ T L Sbjct: 319 ARCGMVVPEGTLFRGGA---FAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFER 375 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + +L L ++ K I D+ + ++ + Sbjct: 376 PGPTKEIWYYEL----PLPEGLKKF-SKGNPIQDEHFEEARKLWRGWD 418 >gi|86130654|ref|ZP_01049254.1| DNA adenine methylase [Dokdonia donghaensis MED134] gi|85819329|gb|EAQ40488.1| DNA adenine methylase [Dokdonia donghaensis MED134] Length = 544 Score = 177 bits (448), Expect = 8e-42, Method: Composition-based stats. Identities = 70/450 (15%), Positives = 159/450 (35%), Gaps = 77/450 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ TRS ++++ + +D F + + Sbjct: 35 LIFIKNLDEV--ETRSELKKQ-----RTGVDFTPIFNEEQQQF------RWKNIKEMDVN 81 Query: 98 NN---LESYIASFSDNAKAI-FEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTV 150 ++ + + E F+ + KA +L + + +++ Sbjct: 82 TRHMLFADTVSGIFPFLRNLGVETSAFAKHMRNASYGMKAQVLDSVIEQLDQLDMD---- 137 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +I+E+++ + E + F TPR ++ L L+ P + T+ Sbjct: 138 EQDAKGDIFEYMLSKM--EGGGTSGQFRTPRHIIRLMVELM----------QPTLEDTIC 185 Query: 211 DPTCGTGGFLTDAMNHVADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 DP+ GT GFL A ++ + ++ +G E + + + + + Sbjct: 186 DPSAGTAGFLVGAKEYIDTHYDVMEREAAKEHIDTMMFNGMEFDATMLRIASMNLFLHGV 245 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 E + NI +SKD + L+NPPF +K+ A + + Sbjct: 246 E-------APNIIDVDAVSKDNDIADAYTLVLANPPFKGTIDKESIASDLK--------- 289 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + S +LFL + +++ GGRAA+++ LF + IR ++ N Sbjct: 290 --TVTSTSKTELLFLALMLRQMK----MGGRAAVIVPDGVLF--GSSKAHKSIREEIVAN 341 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 +EA++++P+ +F ++T + I + + V + + ++ KR + Sbjct: 342 HKLEAVISMPSGVFKPYAGVSTAIMIFTKTGSG-GTDHVWFYD---MLADGKSLDDKRNL 397 Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + D + + + G + Sbjct: 398 LVD------AETFDAFSFGDAFTKVTSEEL 421 >gi|47779389|gb|AAT38618.1| predicted HsdM [uncultured gamma proteobacterium eBACHOT4E07] Length = 475 Score = 177 bits (448), Expect = 8e-42, Method: Composition-based stats. Identities = 101/502 (20%), Positives = 173/502 (34%), Gaps = 78/502 (15%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTR 97 L+ LE E ++ +D G N + SL + Sbjct: 34 LFLKYLEDFEEDLKNRAI-LDGKQHTPIMDERYMWSSWGR---NEGKNSLIDDDLISFVS 89 Query: 98 NNLESYIASFSDNAKA----------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 +L Y+ +F +K IF+ F +E +L + GIE Sbjct: 90 EDLFPYLRNFKTISKDTKSIQYKVGQIFDQIKF-----LVESGNILRDVLDEIDGIEFF- 143 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + +S++YE I++ G A + TPR +++ + +P + Sbjct: 144 KSSESDELSDLYEESIKQMG-NSGTSAGQYYTPRPLINSIVKAV----------NPTLGE 192 Query: 208 TLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 T+ DP CG+GGFL H+ + I GQE A+ + M++ Sbjct: 193 TVLDPACGSGGFLISTFEHILNKKELTAKEFNILQKDTVLGQEKIGIPFAIGIMNMIMHG 252 Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + NI + +TLS DL R ++NPPFG ++ + Sbjct: 253 IE-------TPNIIRDNTLSTNTLDLQDKDRVDVIVANPPFGGSEREEIKSNFAIQ---- 301 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 S+ + LF+ + KL+ GGRA +++ ++ L N A S +R+ Sbjct: 302 ----------SSETAYLFMQYFLKKLK----IGGRAGLIIKNTFLSNPDAAS----LRQL 343 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LL+ + IV LP +F T + T K + QL RN G K Sbjct: 344 LLKECNLHTIVDLP-KVFGTTGVQTVALFFEKGKKTKDIFYYQL-------NLDRNIG-K 394 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 +N + D++ SR++ K S + + P + E Sbjct: 395 TNPLNKKDLEEFDDLFQSRKDSKNSWKISINDIDKETWDL-SPTNPNVEDTSEKRTPSEI 453 Query: 501 DITWRKLSPLHQSFWLDILKPM 522 L I + + Sbjct: 454 IAEIEALDSEAAKAMAAIKELL 475 >gi|237740355|ref|ZP_04570836.1| type I restriction modification system M subunit [Fusobacterium sp. 2_1_31] gi|229422372|gb|EEO37419.1| type I restriction modification system M subunit [Fusobacterium sp. 2_1_31] Length = 498 Score = 176 bits (447), Expect = 9e-42, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 186/504 (36%), Gaps = 60/504 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ E + ++ FG + + N + R Sbjct: 35 LIFMKRLDQE-EQRKEKEQKLGNIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDKVR 93 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156 N +I + ++ ++F + + I ++ +L I +P V D Sbjct: 94 NEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++YE+L+ + + F TP+ ++++ L+ P + + DP CGT Sbjct: 153 DLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200 Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 GFL ++ ++ K + HG + + + +L+ ++ Sbjct: 201 SGFLVSSIEYIKRNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMK--- 257 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + +++ +LS D + L+NPPF K +V++ + L R + Sbjct: 258 ----TPKLKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR----V 302 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LF+ L+ GGR A+++ LF A + +R+ L+EN+ +E Sbjct: 303 VKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQLE 356 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 A++++P+ +F ++T + I + + V + T + KR + ++ Sbjct: 357 AVISMPSGVFKPYAGVSTGILIFTKT-GKGGTDNVWFYDMTADGY---SLDDKRNPVEEN 412 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 I++ + + EN K + D F P + D +I + K+ Sbjct: 413 DIPDIIERFSNLENEKDRKKTDKSFF--------VPKQEIVDNDYDLSINKYKEIIYEKV 464 Query: 508 SPLHQSFWLDILKPMMQQIYPYGW 531 L+ L+ + + I Sbjct: 465 EYEEPKVILEKLEELSKSIDEKLK 488 >gi|223983263|ref|ZP_03633456.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM 12042] gi|223964756|gb|EEF69075.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM 12042] Length = 500 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 67/392 (17%), Positives = 145/392 (36%), Gaps = 54/392 (13%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I +L +L K+ + I + + ++YE+L+ + + F T Sbjct: 120 DDAIFKLPTPLVLSKVIDSLDDIYDSMSKSEKKDIRGDVYEYLLSKIATAG--RNGQFRT 177 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--------VADCG 231 PR ++ + L+ +P T+ DP CGT GFL +A + + Sbjct: 178 PRHIIEMMVKLV----------NPKPEDTICDPACGTAGFLVEASTYLIDTYKNDILMNK 227 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + HG +++ + M+ +ES I+ +LS + Sbjct: 228 QNRDHYMNHMFHGFDMDRTMLRIGAMNMMTHGVESPF-------IEYRDSLSDQNLDQDK 280 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + + + + + K +LFL L+ Sbjct: 281 YSLVLANPPFKGTLDAESVSSDL-----------LKVAKTKKTELLFLALFIRMLK---- 325 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A ++ LF + + +IR+ L+E + +EA++++P+ +F ++T + I Sbjct: 326 IGGRCACIVPDGVLF--GSSNAHVQIRKALIEENRLEAVISMPSGVFKPYAGVSTGILIF 383 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + KV + + + KR I+ ++ I++ + + + + D Sbjct: 384 TKT-GHGGTDKVWFYD---MKADGFSLDDKRSIVKENDIPDIINRFKNLDKEIDRKRTDQ 439 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 F + + ++ L + + Sbjct: 440 SFF----VNKEEIVNNNYDLSINKYKEVVYEK 467 >gi|288917625|ref|ZP_06411989.1| N-6 DNA methylase [Frankia sp. EUN1f] gi|288351018|gb|EFC85231.1| N-6 DNA methylase [Frankia sp. EUN1f] Length = 761 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 113/304 (37%), Gaps = 39/304 (12%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 I + L+ + + TPR VV +A L +P ++DP C Sbjct: 214 GPIADELLAHATTAGGRRSGLLTTPRSVVRMAVRL----------TNPVGGERIHDPFCR 263 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 G FLT A +HV + L+ G + + +L+ L +N Sbjct: 264 AGEFLTAAADHVRSRNPN---TSGLIASGHTSDSSIAGIARMNLLLHDL-------APQN 313 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 ++ G D + F L NPPF + +D + + G P + + Sbjct: 314 LRVGHAGWPDQKPDEMFDLVLVNPPFNDSYWQDTTFLNSF--------WPYGEPPSHNAN 365 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 +L L GRAA+V+ A ES IR ++ ++A+V+LP Sbjct: 366 YAWLQFALTSLAKD----GRAAVVMPVGA--GSSANPRESFIRAAMVSAGAVDAVVSLPP 419 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 LF T I LWIL R+ + R V I+A T + R + D+ +I+ Sbjct: 420 RLFAHTLIPATLWIL--RRPDHDRDDVLFIDARGAGTPVDRI---RLELRDEDIDRIVAA 474 Query: 456 YVSR 459 Y R Sbjct: 475 YQDR 478 >gi|254491510|ref|ZP_05104689.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010] gi|224462988|gb|EEF79258.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010] Length = 488 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 84/458 (18%), Positives = 160/458 (34%), Gaps = 71/458 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTL 91 L+ L+ LE R E ID++ + K A SF + + L Sbjct: 32 MLFLKYLDD-LEQERKLEAELMGEDYRYIIDVDHRWSSWAAPKDANGSFDHNKALTGLDL 90 Query: 92 GSTNTRNNLESYIASF-----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L Y+ F S + F +++ L + + Sbjct: 91 I-DYVDGELFPYLKGFKQRAESPDTIEYKIGEIFGEIRNKIQSGYSLRDAIEKVDELRFR 149 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 V +S++YE I+ G + ++ TPR ++ + P + Sbjct: 150 -SQVEKHELSHLYETKIKNMG-NAGKNGGEYYTPRPLIRAMIDV----------TKPKIG 197 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVCVAG 258 T+YD G+ GFL +A +++ G K + +E + + + + Sbjct: 198 ETIYDGAAGSAGFLCEAYDYLRQGGREKKQLSTNDLKTLQERTFYAKEKKSLAYVIAIMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + N+ +TL++ D+ + L+NPPFG K K+ Sbjct: 258 MILHGIE-------TPNVMHTNTLAENLQDIQPSNQHDIILANPPFGGKERKEVQQNFPI 310 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 K + + LFL H L+ GGRAAIV+ ++ L + Sbjct: 311 --------------KTGETAFLFLQHFMKTLKP----GGRAAIVIKNTFL--SNTDNAAI 350 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ LLEN + ++ P F + T + + + ++ QL R Sbjct: 351 ALRKELLENHNLHTVLDCPAKTFLGAGVKTVVLFFTKGEPTQKVWNYQL-------DPGR 403 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + G K ++D + + + E+ S ++ Sbjct: 404 SLG-KTNPLHDKDLEEFVTLQKGFEDSDKSWSINVEDL 440 >gi|53715506|ref|YP_101498.1| type I restriction-modification system DNA methylase [Bacteroides fragilis YCH46] gi|52218371|dbj|BAD50964.1| type I restriction-modification system DNA methylase [Bacteroides fragilis YCH46] Length = 271 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 38/278 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + G+L + + I+ ++ +YE ++ F + +F TP +V L Sbjct: 28 EPGVLKSVVDEINKIDPQ-KFNDHDLIGRVYESFLQAFSINADKEEGEFYTPHSIVELIA 86 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L+ T+YDP CG+GG A + G + K + +GQE E Sbjct: 87 SLI-----------EPFDGTVYDPCCGSGGMFVQAAIFIEAHGGNTKA---VNVYGQESE 132 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 P T+ + + IR + + ST S D +F ++NP +K Sbjct: 133 PATYRLAKMNLAIRGISYHLGD------RAVSTFSDDQHKELKFDNTMANP-----LKKY 181 Query: 309 KDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 + E R+ G G+P S+ + +++H+ NKL + G A +L++ L + Sbjct: 182 AEYGGFE----TDPRWQGYGVPPTSNANYAWILHILNKLNVSC---GIAGFLLANGALGD 234 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 IR+ L+E+D +EAI+ P ++F+ T+I++ Sbjct: 235 NDTQG----IRKQLIESDKVEAIIVSPRNMFYSTDISS 268 >gi|218439053|ref|YP_002377382.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] gi|218171781|gb|ACK70514.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] Length = 509 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 112/558 (20%), Positives = 197/558 (35%), Gaps = 82/558 (14%) Query: 7 SAASLANFIWKNAEDLWGD------FKHTDFGKVI--LP-FTLLRRLE---CALEPTRSA 54 S L N IW+ + L D + I L L+ L+ Sbjct: 2 SKEQLTNDIWRACDILRRDNNCGGIME------YIEHLAWLLFLKFLDEQEDTFALEAEL 55 Query: 55 VREKYLAFGGSNIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 EKY ++ K NT E+ TL + L Y+AS S Sbjct: 56 RNEKYHYMIEGEYRWSNWVTKGLGKKKKQSDKRNTPEWDADTLMG-FVKEKLIPYLASLS 114 Query: 109 DNA-KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + + + T+ + L + + I+ +S+ YE+L++R G Sbjct: 115 GSPEREVIAGIFGGRTVILCDSVYNLKDVLEIVDRIDFSNSD-DIYTVSHTYENLLQRLG 173 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 SE ++ A +F TPR V+ ++ P + T+YDP CGT GFL A ++ Sbjct: 174 SE-NKMAGEFYTPRPVIRFMVEVI----------DPKIGETVYDPACGTCGFLVAAYEYM 222 Query: 228 ADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + GQE +P + M++ + L +IQ+ +TL + Sbjct: 223 KQWEQTIRDRDILQRHTFFGQEKKPLPALLGTMNMVLHGV-------LVPDIQRKNTLEE 275 Query: 285 D-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHL 342 D K++ L+NPPFG K+ ++K P ++ +LFL H+ Sbjct: 276 DTRTAIKKYDIILTNPPFGG---KENKQIQKNF------------PVSANATELLFLEHI 320 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401 KL+ N R +V+ LF A ++ WLL + + +V+LP F + Sbjct: 321 IKKLKTDDNA--RCGMVVPEGTLFRSGA---FGTVKEWLLNDFNLVMVVSLPPGTFAPYS 375 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460 ++ L K +V L ++ K I+D RQ+ +I+ + Sbjct: 376 DVKAALLFFERGKQG---DEVLYQEVV-LPEELKKF-SKGNPIDDIHFRQVREIWQQMKA 430 Query: 461 ----NGKFSRMLDYRTFGYRRIKVLRPLRMSFI-LDKTGLARLEADITWRKLSPLHQSFW 515 GK + ++ F + R ++ T +L + Sbjct: 431 YQQGKGKKPEITEFSWFEKTEDLIKRGFDLAAKNPTTTEREKLPEPSVLLDRIIKNNEKL 490 Query: 516 LDILKPMMQQIYPYGWAE 533 L + Q++ + Sbjct: 491 HQNLLSLKQKLDEGVKWD 508 >gi|170724868|ref|YP_001758894.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908] gi|169810215|gb|ACA84799.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908] Length = 493 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 87/477 (18%), Positives = 164/477 (34%), Gaps = 61/477 (12%) Query: 10 SLANFIWKNAEDLWGD--FKHTDFGKVILP----FTLLRRLECALEPTRSAVREKYLAFG 63 S+++ I + + D L L+ + + E L Sbjct: 2 SISSAIKSIQDIMRKDAGVDGDAQR---LGQMSWLLFLKVFDA-----QEEELELELDDY 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 I + + + L + L++ A N + FS Sbjct: 54 REPIPEQFLWRNWAADNQGITGEELLDFVNDELFPQLKNLTAPIDKNPRGYVVKEAFSDA 113 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ LL ++ + I+ D+ + ++YE +++ S + A +F TPR + Sbjct: 114 FNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGDLYEQILKDLQSAGN--AGEFYTPRAI 170 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240 A+ P + ++ DP CGTGGFL A +HV Sbjct: 171 TKFIVAV----------TDPKLGESIMDPACGTGGFLACAFDHVKTNYVKSGEDHKTLQQ 220 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNP 299 G E + H +C M++ +E I+ G+TL+K + ++NP Sbjct: 221 QIFGVEKKQLPHLLCTTNMMLHGIEV------PVQIKHGNTLNKPLSSWDDQVDVIITNP 274 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG ++D +EK + R + +D LFL + L GRAA+V Sbjct: 275 PFGG---TEEDGIEKNFPSEMQTR------ETAD---LFLQLIIEVLATK----GRAAVV 318 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417 L LF ++I++ L E + IV LP +F + T I T + + + + Sbjct: 319 LPDGTLFGEGVK---TKIKKLLTEECNLHTIVRLPNGVFNPY-TGIKTNILFFNKGQPTK 374 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI--YVSRENGKFSRMLDYRT 472 + + + + K + ++ + SR + + + Sbjct: 375 DVWFYEHPYPAGVKNYNKTKPMKFEEFATELSWWGVETDGFASRVENEQAWKVSIDD 431 >gi|330941027|gb|EGH43949.1| type I restriction-modification system, M subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 494 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 146/460 (31%), Gaps = 72/460 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + R E S I + + +L N Sbjct: 33 LLFLKIFDD-----RELEWELMDDNYKSPIPDSCRWRTWAADPEGMTGDALKDFIDNNLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ + +S A F ++ LL ++ N Sbjct: 88 PQLQN-LHEYSTTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQEGVDFNKAQERHEFGN 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE L+R + A +F TPR V ++ P + L DP CGTG Sbjct: 147 LYEQLLRDLQEAGN--AGEFYTPRPVTEFMVRMV----------DPKLDEKLMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFLT + H + + G E +P H + M++ +E Sbjct: 195 GFLTCTIEHKRSRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIEV------PS 248 Query: 275 NIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I+ +TLSK +R H ++NPPFG ++G F + Sbjct: 249 QIRHDNTLSKPLISWGPSERVHCIVANPPFGGME-----------EDGIETNFPAAF-RT 296 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + LFL+ + L+ GRAA+VL +F S I+ LL + IV Sbjct: 297 RETADLFLVLIMQLLKD----NGRAAVVLPDGFMFGDGIKS---RIKEKLLTECNLHTIV 349 Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQ 448 LP +F + T IAT L + ++ + G K + Sbjct: 350 RLPKGVFNPY-TPIATNLLFFTKGTPTQQ---------VWFYEHQYPAGVKNYNKTRPLR 399 Query: 449 RRQI----------LDIYVSRENGKFSRMLDYRTFGYRRI 478 + D + +R +F+ + R Sbjct: 400 IEEFAVEEAWWGSEADGFAARVENEFAWKVSIDELQARNW 439 >gi|294677466|ref|YP_003578081.1| type I restriction-modification system RcaSBIV subunit M [Rhodobacter capsulatus SB 1003] gi|294476286|gb|ADE85674.1| type I restriction-modification system RcaSBIV, M subunit [Rhodobacter capsulatus SB 1003] Length = 482 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 89/499 (17%), Positives = 173/499 (34%), Gaps = 63/499 (12%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ L R + Y + + ++ Sbjct: 33 LFLKYLHDLEGERRDRAELEGKTYAPIIDGRYRWDRWAAPKKNGVFDHDTAMTGDDLVRF 92 Query: 96 TRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L ++A F D A I F+ ++ +L + + G+ Sbjct: 93 VDGELFPHLALFHDRATGPDTIEYKIGEVFTELRSKFRSGYILRDVLEIVDGLAFKTQA- 151 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +S +YE IRR G ++ TPR ++ A++ P + T+Y Sbjct: 152 DKHELSALYETRIRRMG-NAGRNGGEYYTPRPLIRAMIAVV----------DPQIGETIY 200 Query: 211 DPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 D G+ GFL +A +++ S ++ +GQE + + + + M++ +E Sbjct: 201 DGAVGSAGFLCEAYDYLRRPDLSASDYETLQRRTFYGQEKKSLAYVIGIMNMVLHGIE-- 258 Query: 268 PRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + NI ++L++ D+ R L+NPPFG ++ V++ Sbjct: 259 -----APNIVHTNSLNENVLDIQEKDRHDIVLANPPFGG---GERREVQQNFPI------ 304 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 K + + LFL H KL GGRAA+V+ ++ L N S +RR LL+ Sbjct: 305 -----KSGETAYLFLQHFIRKLR----AGGRAAVVIKNTFLSNTDNAS--VALRRELLDT 353 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + ++ P F + T + ER QL R+ G K + Sbjct: 354 CNLHTVLDCPQGTFQGAGVKTVVLFFEKGAPTERIWFYQL-------DPGRSLG-KTNAL 405 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 NDD + +++ + G + +++ ++ + L E I Sbjct: 406 NDDDMAEFVEMQRTFATGAKAWVVER--TAVDASTCDLSVKNPNAPEAETLRAPEEIIEA 463 Query: 505 RKLSPLHQSFWLDILKPMM 523 + L+ ++ ++ Sbjct: 464 ILARDAETAEILERIRGLL 482 >gi|294782548|ref|ZP_06747874.1| type I restriction-modification system, M subunit [Fusobacterium sp. 1_1_41FAA] gi|294481189|gb|EFG28964.1| type I restriction-modification system, M subunit [Fusobacterium sp. 1_1_41FAA] Length = 498 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 89/507 (17%), Positives = 184/507 (36%), Gaps = 69/507 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ E + ++ FG + + N + R Sbjct: 35 LIFMKRLDQE-EQRKEKEQKLGSIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDKVR 93 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156 N +I + ++ ++F + + I ++ +L I +P V D Sbjct: 94 NEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++YE+L+ + + F TP+ ++++ L+ P + + DP CGT Sbjct: 153 DLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200 Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 GFL ++ ++ K + HG + + + +L+ ++ Sbjct: 201 SGFLVSSIEYIKKNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK--- 257 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + +++ +LS D + L+NPPF K +V++ + L R + Sbjct: 258 ----TPKLKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR----V 302 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LF+ L+ GGR A+++ LF A + +R+ L+EN+ +E Sbjct: 303 VKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQLE 356 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 A++++P+ +F ++T + I + + V + T + KR + ++ Sbjct: 357 AVISMPSGVFKPYAGVSTGILIFTKT-GKGGTDNVWFYDMTADGY---SLDDKRNPVEEN 412 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTF----------------GYRRIKVLRPLRMSFILD 491 I++ + + EN K + D F Y+ I + + Sbjct: 413 DIPDIIERFSNLENEKDRKRTDKSFFVPKQEIIDNDYDLSINKYKEIVYEKVEYEEPKVI 472 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDI 518 L L I KL L DI Sbjct: 473 LEKLEELSKSID-EKLKELKVMLDEDI 498 >gi|218282513|ref|ZP_03488763.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989] gi|218216500|gb|EEC90038.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989] Length = 507 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 156/419 (37%), Gaps = 70/419 (16%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I ++ A +L K+ + I D + ++YE+L+ + + F T Sbjct: 120 DDAIFKIPTALVLSKVIDSLDEIYSLMDKTTSMDIRGDVYEYLLSKIA--SAGRNGQFRT 177 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234 PR ++ + L+ +P + DP CGT GFL A +++ + + Sbjct: 178 PRHIIRMMVELM----------NPTPQELICDPACGTSGFLVVASDYLMEKYRNDILMNK 227 Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +G +++ + M+ +E S NI+ +LS + Sbjct: 228 QNRDHFMNHMFNGFDMDRTMLRIGAMNMMTHGVE-------SPNIEYRDSLSDQNTDNNK 280 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + D + + + K +LFL L++ Sbjct: 281 YSMILANPPFKGSLDYDSVSTDL-----------LKIAKTKKTELLFLALFIRMLKV--- 326 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A ++ LF + IR+ +++++ + A++++P+ +F ++T + I Sbjct: 327 -GGRCACIVPDGVLF--GSSKAHKAIRQAIVDDNRLVAVISMPSGVFKPYAGVSTGILIF 383 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKF 464 + KV + + + KR + + IL+ + + R+ + Sbjct: 384 TKT-GHGGTDKVWFYD---MKADGFSLDDKRAPVKESDIPDILERFKNLDKEVERKRTEQ 439 Query: 465 SRMLDYRTFG----------YRRI---KVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 S ++D + Y+ + KV P + D L R E D +L L Sbjct: 440 SFLVDKQEIIDNDYDLSINKYKEVVYEKVEYPPTSEILADIEALNR-EIDKNLAELKAL 497 >gi|307566324|ref|ZP_07628763.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A] gi|307344901|gb|EFN90299.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A] Length = 301 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 77/345 (22%), Positives = 130/345 (37%), Gaps = 55/345 (15%) Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D CG+G L + I +GQE T+ + ML+ ++ Sbjct: 1 MLDFACGSGSLLLNVR-------HEMGTNGIGKIYGQEKNITTYNLARMNMLLHGVK--- 50 Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I G TL D F ++NPPF +WE + + + Sbjct: 51 --DTEFEIHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEPKE-------ETAK 101 Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF GL S FL+H + L +G G AI+L LF G E IR+ Sbjct: 102 DFRFSRYGLAPKSAADFAFLLHGFHYL----SGDGTMAIILPHGVLFRGGK---EETIRK 154 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL +D I+A++ LP +LF+ T I + +L K R + INA+ + GK Sbjct: 155 KLLSDDNIDAVIGLPANLFYSTGIPVCILVL---KKCRRTDDILFINASSEEHYEK--GK 209 Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 ++ ++ +I++ Y R E +++ R++ + + L+ + L Sbjct: 210 RQNLLRPKDINKIVETYQFRIEENRYA----------RKVYMREIKDNGYNLNISRYVNL 259 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 + L+ +H+ K + F+KE Sbjct: 260 SKEEEKIDLAEVHRQLVATEEKIEAARQKH----NEFLKELGLDL 300 >gi|283853809|ref|ZP_06371031.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B] gi|283570796|gb|EFC18834.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B] Length = 501 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 163/469 (34%), Gaps = 88/469 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTL 91 LR L+ LE R+ E ID + K SF + + + L Sbjct: 32 MLFLRYLDD-LEAERAMEAELLGKDYSYIIDEAHRWSKWAAPKKQDGSFDHDNALTGDDL 90 Query: 92 GSTNTRNNLESYIASF-----SDN-----AKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 + + L Y+ F S + IF + ++ + L + Sbjct: 91 IAY-VNDVLFPYLRGFKQRASSPDTIEYKIGEIFGEIK-----SKFQSGYSLRDALELVD 144 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + +S++YE I+ G ++ TPR ++ ++ Sbjct: 145 QLHFR-SQKEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMVRVI---------- 192 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---------------PILVPHGQE 246 P + T+YD CG+ GFL +A +++ + G+E Sbjct: 193 KPKIGETIYDGACGSAGFLCEAFDYLRYGPDGKESENGNGSTLTVDQLRALQTSTFFGKE 252 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGK 303 + + + + M++ +E + NI +TL++ D+ R+ L+NPPFG Sbjct: 253 KKSLAYVIAIMNMILHGIE-------APNIIHTNTLAENLADVQEKDRYDIILANPPFGG 305 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K + K + + LFL H L+ GGRAA+V+ ++ Sbjct: 306 KERGEIQQNFPI--------------KTGETAFLFLQHFIKYLK----AGGRAAVVIKNT 347 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 L N S +R+ LL++ + I+ P F + T + + + Sbjct: 348 FLSNSDNAS--RALRQELLQSCNLFTILDCPGGTFLGAGVKTVVLFFQKGASTRKVWYYT 405 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 L R G K +NDD + + + + + + S ++D + Sbjct: 406 L-------DPGRKMG-KTTALNDDDLAEFVSLQATFADSEKSWIMDVKD 446 >gi|291458786|ref|ZP_06598176.1| putative type I restriction-modification system, M subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418703|gb|EFE92422.1| putative type I restriction-modification system, M subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 499 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 74/429 (17%), Positives = 156/429 (36%), Gaps = 74/429 (17%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I ++ +L KI I + + + ++YE+L+ + F T Sbjct: 119 DDAIFKVNTPLMLSKIVDAMDEIYSMMEELHQTDIRGDVYEYLLSKIAQSG--VNGQFRT 176 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232 PR ++ + ++ P ++ DP CGT GFL + +++ + Sbjct: 177 PRHIIRMMVEMM----------DPKPTDSICDPACGTSGFLVASGDYLREKYKKEVLLDK 226 Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + HG +++ + M+ +E+ I+ +LS + Sbjct: 227 QNRNHFMNDMFHGYDMDRTMLRIGAMNMMTHGVENPF-------IEYRDSLSDQNPDKEM 279 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + D + + + + K +LFL L+ Sbjct: 280 YSLILANPPFKGNLDADTVSTDLQ-----------KVCKTKKTELLFLALFVRMLK---- 324 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A ++ LF + + IR+ ++EN +EA++++P+ +F ++T + I Sbjct: 325 IGGRCACIVPDGVLF--GSSNAHKAIRKEIVENQRLEAVISMPSGVFKPYAGVSTGILIF 382 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + V + T + KR I D+ + I+ + + E K + D Sbjct: 383 TKT-GHGGTDDVWFYDMTADG---FSLDDKRTEIKDNDIQDIISRFKNLEAEKGRKRTDK 438 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------QSFWLDILKPM 522 SF++ K +A + D++ K + S + ++ + Sbjct: 439 ----------------SFMVSKKEIADNDYDLSINKYKEVEYVAVEYPPTSEIMANIREI 482 Query: 523 MQQIYPYGW 531 +QI Sbjct: 483 EKQIGKEMD 491 >gi|158335391|ref|YP_001516563.1| type I restriction-modification system, M subunit [Acaryochloris marina MBIC11017] gi|158305632|gb|ABW27249.1| type I restriction-modification system, M subunit [Acaryochloris marina MBIC11017] Length = 486 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 91/478 (19%), Positives = 168/478 (35%), Gaps = 61/478 (12%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGG 64 SL+ I + + D G+ L + + A+ + Y + Sbjct: 2 SLSATIKSIQDIMRKDVGVDGDAQRIGQ--LGWMLFFKIFSDQ-DLELEALVDDYESPIP 58 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDFDF 120 + + ++ + +L L L+ + + + F Sbjct: 59 AELQWSAWADSEQLGKQALTGEALLDLVDNCLFPALKELDLEDLEGIAQ-GRGALLRSVF 117 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ LL ++ + ++ + ++YE L++ + + A +F TP Sbjct: 118 EDAYNYMKSGTLLRQVVNKINDNIDFNESKQRDLFGDMYEQLLKDL--QGAGNAGEFYTP 175 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--IPP 238 R V A + +P + + DP CGTGGFLT A H+ + Sbjct: 176 RAVTQFAIDRV----------NPQLGERVLDPACGTGGFLTCAFEHLKQQVQGSQDLEQA 225 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYC 295 G E +P H +CV ML+ LE N++ +TL K D + Sbjct: 226 KQGVWGVEKKPLPHLLCVTNMLVHGLEV------PTNVRHDNTLRKPLRDYARADQVDVV 279 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 ++NPPFG ++D +E+ R + +D LFL+ + L+ GGR Sbjct: 280 VTNPPFGG---MEEDGIERGFPTEFRTR------ETAD---LFLVLVMELLK----AGGR 323 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414 AAIVL LF ++ I+ LL + IV LP +F T+I T L + + Sbjct: 324 AAIVLPDGTLF---GEGIKTRIKEKLLRECNLHTIVRLPNGVFAPYTSIKTNLLFFTKGE 380 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + + K + + ++ + RE +F+ + + Sbjct: 381 PTQEIWYY-----EHPYPKGYKSYSKTKPMRIEEFGPEKAWWEQREENEFAWKVSLQE 433 >gi|197119931|ref|YP_002140358.1| type I restriction-modification system DNA adenine N6-methyltransferase [Geobacter bemidjiensis Bem] gi|197089291|gb|ACH40562.1| type I restriction-modification system DNA adenine N6-methyltransferase [Geobacter bemidjiensis Bem] Length = 484 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 83/455 (18%), Positives = 156/455 (34%), Gaps = 71/455 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF--------VKVAGYSFYNTSEYSLS 89 L+ L+ LE + A+ + S I E + G +N + + Sbjct: 32 LLFLKYLDG-LEQDK-AMEAELEGKKYSYILDEPYRWETWAAPKGADGQLDHNKA-MTGD 88 Query: 90 TLGSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIE 144 L L Y+ F A I F ++ L I + + Sbjct: 89 DLR-DFVDRKLFPYLHGFKQKASGPNTIEYKIGEIFGEIKNKIHSGYSLRDIIDHIDELR 147 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 +S +YE IR G ++ TPR ++ ++ P Sbjct: 148 FR-SQSEKHELSQLYEAKIRNMG-NAGRNGGEYYTPRPLIRAIVQVV----------KPE 195 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGML 260 + +YD G+ GFL +A +++ + K+ +G+E + + + + ++ Sbjct: 196 IGERIYDGAVGSAGFLCEAYDYLVAKPNLTTADLKMLQERTFYGKEKKSLAYVIAIMNLI 255 Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + +E + NI +TL++ D+ RF L+NPPFG K + Sbjct: 256 LHGIE-------APNIIHTNTLTENLADVQEKDRFDVILANPPFGGKERPEVQQNFPI-- 306 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + + + LFL H L+ GGRA +V+ ++ L + + Sbjct: 307 ------------RTGETAFLFLQHFIKMLK----AGGRAGVVIKNTFL--SNTDNAAVSL 348 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R+ LLE+ + I+ P F + T + QL RN Sbjct: 349 RKLLLESCNLHTILDCPGGTFQGAGVKTVVLFFEKGAPTREIWYYQL-------DPGRNM 401 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 G K +NDD + +++ + + S ++ Sbjct: 402 G-KTNPLNDDDLIEFVELRKTLADSPKSWSVNVDD 435 >gi|288573765|ref|ZP_06392122.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569506|gb|EFC91063.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 237 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 30/256 (11%) Query: 1 MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M E + A+L N +W A+ L G +++ V+L L+ + A + + + Sbjct: 1 MAEKKTNGANLGFENQLWAAADKLRGHMDASEYKHVVLGLIFLKYISDAFQSKYAELEAM 60 Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNA 111 + A F+ E L ++ + + I + Sbjct: 61 KE--TDYTDPEDRDEYAAANIFWVPQEARWKRLQNSAKQPTIGKVVDDAMVAIEKENPTL 118 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEV 170 K + ++ + L ++ I L D V+ +YE+ + RF + Sbjct: 119 KGVLPKDYSRPSLDK----YRLGELIDIIGKIGLGDDESRSKDVLGRVYEYFLGRFAAAE 174 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +G +F TPR VV L ++ +YDP CG+GG + V + Sbjct: 175 GKGGGEFYTPRCVVKLLVGMI-----------EPYKGRVYDPCCGSGGMFVQSERFVEER 223 Query: 231 GSHHKIPPILVPHGQE 246 G + +GQE Sbjct: 224 GGRLG---DIAIYGQE 236 >gi|126665709|ref|ZP_01736690.1| type I restriction-modification system, M subunit [Marinobacter sp. ELB17] gi|126629643|gb|EBA00260.1| type I restriction-modification system, M subunit [Marinobacter sp. ELB17] Length = 494 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 80/481 (16%), Positives = 160/481 (33%), Gaps = 67/481 (13%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 S+++ I + + D G+++ L+ + E + Y + Sbjct: 2 SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDDR-EQEWEVFYDDYKSPLPE 59 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + ++ + L L++ + D+ + + F Sbjct: 60 QLRWRNWAADPEGM----TGDDLKDFIDNTLFTGLQN-LEPAGDDYRGVVIRNVFEDAYN 114 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 ++ L+ ++ + + ++YE +++ S + A +F TPR V Sbjct: 115 YMKSGQLMRQVINKLQSGVNFNKSAERHELGDMYEQILKDLQSAGN--AGEFYTPRAVTQ 172 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVP 242 + P + + DP CGTGGFLT ++H + Sbjct: 173 FMVNRV----------DPKLEEKVMDPACGTGGFLTCTIDHKRTRYVQTPQDEQTLQRTI 222 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNP 299 G E +P H + +++ +E I+ +TL++ +R ++NP Sbjct: 223 IGVEKKPLPHLLATTNLILHGIEV------PDQIKHDNTLARPLISWGPKERVDIIIANP 276 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG ++G F + + + LF+ + L GGRAA+V Sbjct: 277 PFGGME-----------EDGIETNFPAAF-RTRETADLFMTLFIHLLR----NGGRAAVV 320 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418 L LF + ++ LL + IV LP +F T I T L + K E Sbjct: 321 LPDGFLFGEGMK---TRLKEKLLNECNLHTIVRLPNGVFSPYTGIKTNLLFFTKGKPTEN 377 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIIN-DDQRRQI------LDIYVSRENGKFSRMLDYR 471 + K + + ++ + +I D + SRE + + + Sbjct: 378 VWYY-----EHPYPDGVKSYNKTKPMRFEEFQTEINWWGSEADGFTSREETEQAWKVSID 432 Query: 472 T 472 Sbjct: 433 D 433 >gi|91217497|ref|ZP_01254456.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Psychroflexus torquis ATCC 700755] gi|91184382|gb|EAS70766.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Psychroflexus torquis ATCC 700755] Length = 485 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 88/451 (19%), Positives = 163/451 (36%), Gaps = 65/451 (14%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGS 93 LR L+ E+Y + K A + + L Sbjct: 33 LFLRYLDELERDKADEAELKGEEYSFILAEEYRWPNWAMPKDAEGKIDHHVAMTGVDLVQ 92 Query: 94 TNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPD 148 L Y+A F +DNA I FS +++ L +I + + Sbjct: 93 -FVDGKLFPYLAKFKQEADNANTIEYKIGEIFSELKNKIQSGYNLREILEYADELPFRGS 151 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 T +S++YE I+ G + TPR ++ ++ P + Sbjct: 152 T-DKHELSHLYETKIKNMG-NAGRNGGQYYTPRPLIRAMIKVV----------DPQIGEK 199 Query: 209 LYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +YD G+ GFL +A +++ + K +G+E + + + + M++ + Sbjct: 200 VYDAAAGSCGFLVEAYDYMYQRMDKTTDNLKTLQEDTLYGKEKKNLAYVIGIMNMILHGI 259 Query: 265 ESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 E + NI +TL + D+ R+H L+NPPFG K + Sbjct: 260 E-------APNIVHTNTLGENIRDIQEKNRYHVILANPPFGGKERAEVQQNFDI------ 306 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 K + + LFL H L+ GG+AAIV+ ++ L N S +R+ L Sbjct: 307 --------KTGETASLFLQHFIKSLK----IGGKAAIVIKNTFLSNADNASI--SLRKHL 352 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 LE+ + I+ +P+ F + T + + ++ QL ++ K Sbjct: 353 LESCNLHTILDMPSGTFTGAGVKTVVLFFQKGEPTKKIWYYQLDAGRNMG--------KT 404 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 +ND+ + + IY + N + S + + Sbjct: 405 NPLNDEDMAEFITIYKEKSNTEKSWIFNVND 435 >gi|57168617|ref|ZP_00367749.1| HsdM [Campylobacter coli RM2228] gi|305432345|ref|ZP_07401508.1| type I restriction-modification system DNA-methyltransferase [Campylobacter coli JV20] gi|57019898|gb|EAL56578.1| HsdM [Campylobacter coli RM2228] gi|304444693|gb|EFM37343.1| type I restriction-modification system DNA-methyltransferase [Campylobacter coli JV20] Length = 495 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 102/547 (18%), Positives = 196/547 (35%), Gaps = 90/547 (16%) Query: 13 NFIWKNAEDLWGDFK----HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 N I K + L D + + I L+ L+ E + A+ Sbjct: 3 NKIDKITDILRRD-DGISGAMHYSEQISWILFLKFLDDYEEELKLEAILNDKAYKSI--- 58 Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTN----------TRNNLESYIASF--SDNAKAIFE 116 + + + + S L N N L +Y+ SF ++N K+I Sbjct: 59 ---LEEKFSWRIWAAPKTSEGKLDVKNALSGDDLLSFVNNELFAYLKSFKDNENFKSIEY 115 Query: 117 DFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F R+ L ++ + + +YE L++ GS+ + Sbjct: 116 KIGGIFEFIDNRIANGHTLREVINLVDELSFS-KESDVFALGEVYEKLLKDMGSDGG-NS 173 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR ++ ++ P +YDP CG+ GFL ++ H+ + Sbjct: 174 GEFYTPRPLIRAMVEVI----------DPKAKERIYDPACGSCGFLVESFLHILYEDRNK 223 Query: 235 KIP-----------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 G+E P ++A+ V M++ S NI + +TL+ Sbjct: 224 NKKANLSVEELEFLQNDALFGKEKTPLSYAMGVMNMILH-------EVKSPNIIKTNTLN 276 Query: 284 K---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFL 339 K D+ +++ L+NPPFG K+K+ ++ P S+ +LFL Sbjct: 277 KKITDITQSEKYEVILANPPFGG---KEKEQIQNNF------------PVKSNATELLFL 321 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 H+ L N GR AI++ LF + +++ LLEN +E +++LP+ +F Sbjct: 322 QHILKSL----NNNGRCAIIVPEGVLFQN--SNAFVSVKKDLLENFNLECVLSLPSGVFL 375 Query: 400 R-TNIATYLWILSNRKTEER--RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + + T + S K KV + K + + + L IY Sbjct: 376 PYSAVKTNVLFFSKGKRSICGEDDKVYYYELIPPFKLT-----KNKPLEYAHFEEFLKIY 430 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 R+ S ++ + R + + ++ L +E ++ K + + L Sbjct: 431 KERKITPHSYLVSIKELEERNYDI--SAKNPNSKEEKTLREVEEILSTLKANQEKANELL 488 Query: 517 DILKPMM 523 ++ ++ Sbjct: 489 QKIQNII 495 >gi|254447352|ref|ZP_05060818.1| type I restriction-modification system, M subunit [gamma proteobacterium HTCC5015] gi|198262695|gb|EDY86974.1| type I restriction-modification system, M subunit [gamma proteobacterium HTCC5015] Length = 498 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 83/445 (18%), Positives = 150/445 (33%), Gaps = 54/445 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + R E S I + + + L Sbjct: 33 MLFLKIFDD-----REKEWELMNPDYQSPIPQQLRWRNWAADSEGMTGEKLKDFVDNKLF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + ++ +AI F ++ LL ++ T + Sbjct: 88 KQLKE-LTPQGEDRRAIVIRNVFEDAYNYMKSGQLLRQVINKMEEGINFNKTSERHELGT 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE +++ S + A +F TPR V + P + T+ DP CGTG Sbjct: 147 MYEQILKDLQSAGN--AGEFYTPRAVTQFMVNRV----------DPKLEDTVMDPACGTG 194 Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFLT A+++ + G E +P H + +++ +E Sbjct: 195 GFLTCAIDYKRKHYVETPEQEATLQNTIAGVEKKPLPHLLATTNLILHGIEV------PD 248 Query: 275 NIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I+ +TL +D +R ++NPPFG +++D +E + R Sbjct: 249 QIKHDNTLARPLRDWGPKERVDVIVANPPFGG---QEEDGIETNFPSAFRTR-------- 297 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + LF+ + L GGRAA+VL LF + ++ LLE + IV Sbjct: 298 -ETADLFMTLFIHLLRD----GGRAAVVLPDGFLFGEGMK---TRLKEKLLEECNLHTIV 349 Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 LP +F + T I T L + K E + + + + K + Sbjct: 350 RLPNGVFNPY-TGIKTNLLFFTKGKPTETVWYYEHPYPEGYKSYSKTKPMKFSEFQTEID 408 Query: 450 RQILDI--YVSRENGKFSRMLDYRT 472 + + SRE + + + Sbjct: 409 WWGTEADGFASREETEQAWKMSIDD 433 >gi|229826015|ref|ZP_04452084.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC 49176] gi|229789757|gb|EEP25871.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC 49176] Length = 500 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 63/368 (17%), Positives = 133/368 (36%), Gaps = 56/368 (15%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I +L +L K+ + I + + + ++YE+L+ + F T Sbjct: 120 DDAIFKLPTPLVLSKVVDSLDEIYKIMNEIQTIDVRGDVYEYLLSKIAQSG--LNGQFRT 177 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234 PR ++ + L+ +P + DP CGT GFL A ++ + Sbjct: 178 PRHIIRMMVELM----------NPSADEVICDPACGTSGFLVAAGEYLKENRKEEIFYNR 227 Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + +G +++ + M+ ++ + I+ +LS + Sbjct: 228 QKKEHYMNHMFYGYDMDRTMLRIGAMNMMTHGID-------NPIIEYRDSLSDWNSDKDK 280 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + D + + + K +LFL L+ Sbjct: 281 YSLVLANPPFKGSLDADSVSGDL-----------LKVCKTKKTELLFLTLFIRMLK---- 325 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A ++ LF + +IR+ ++EN + A++++P+ +F ++T + I Sbjct: 326 IGGRCACIVPDGVLF--GSSKAHKDIRKEIVENHRLVAVISMPSGVFKPYAGVSTAILIF 383 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464 + V + T + KR ++D+ I + R+ Sbjct: 384 TKT-EHGGTDNVWFYDMTADG---FSLDDKRSPVSDNDIPDITQRFKNLDKESDRKRTDK 439 Query: 465 SRMLDYRT 472 S M+ + Sbjct: 440 SFMVPKKE 447 >gi|282866391|ref|ZP_06275436.1| N-6 DNA methylase [Streptomyces sp. ACTE] gi|282558787|gb|EFB64344.1| N-6 DNA methylase [Streptomyces sp. ACTE] Length = 472 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 +RRL+ LE + + + I + + F N S ++ T Sbjct: 1 MFIRRLD-ILEQAKENRANRTGRLAENPIYSDDTQVLRWSVFINESPENMLTRVRDGVFP 59 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 L + S A +E + LL K +GI++ ++ Sbjct: 60 WLRALGGEGSTYAH------HMKDARFTIETSNLLTKAVDMINGIDMG----DKDTKGDL 109 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+++ + + F TPR ++ L ++ +P + DP CGT G Sbjct: 110 YEYMLSKIATAG--QNGQFRTPRHIIQLMVEMM----------APQPGDEICDPACGTAG 157 Query: 219 FLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271 FL A +V P HG + + + ML+ +E Sbjct: 158 FLVAAAEYVEQTHREEMFEPAQRQHFNESMFHGFDFDSTMLRIGSMNMLLHSVE------ 211 Query: 272 LSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + +I+ +L+++ R+ L+NPPF + D A + + + K Sbjct: 212 -NPDIRYRDSLAQNVAGEADRYSLILANPPFAGSLDHDATAADLQ-----------KVVK 259 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGRAA+++ LF+ + ++R+ L+E ++A+ Sbjct: 260 TKQTELLFLALFLRLLKP----GGRAAVIVPGGVLFDSSSN-AYKDMRKLLVEGHKLDAV 314 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 ++LP +F ++T + + + + V T + KR + D+ Sbjct: 315 ISLPGGVFKPYAGVSTAILVFTKTNSG-GTDNVWFYEVTADGW---SLDNKRSPLLDED 369 >gi|317506901|ref|ZP_07964673.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974] gi|316254829|gb|EFV14127.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974] Length = 484 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 78/451 (17%), Positives = 153/451 (33%), Gaps = 73/451 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLGS 93 +RRL+ + E G I+ F+ F N + + + + Sbjct: 35 LLFIRRLDDV-----QTLAENRARHTGGAIENPVFLPGQSQLRWREFKNAAPVVMHKIVA 89 Query: 94 TNTRNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 L + +S++ K F + LL K+ I + Sbjct: 90 DEVFPFLRALGDGSTYSEHMKD--ARF-------TIPTPALLSKVVDMLDDIPMT----D 136 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 ++YE+L+ + + F TPR ++ L + P + D Sbjct: 137 RDTNGDLYEYLLSKIAAAG--VNGQFRTPRHIIDLMVKM----------TDPQPKDEICD 184 Query: 212 PTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRL 264 P CGT GFL A ++ D + K + HG + + + ML + Sbjct: 185 PACGTAGFLVAASEYIRDTHADALLGEEQRKHFHRSMFHGYDFDSTMLRIGSMNMLQHGI 244 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 E + +I+ +LS+ +++ L+NPPF ++ E + +L R Sbjct: 245 E-------APDIRYRDSLSEGASEDAEKYTLILANPPFAGS-------LDYEATSKDLQR 290 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + K + GGRAA+++ LF + +R+ L+E Sbjct: 291 ----VVKTKKTE----LLFLALFLKLLKPGGRAAVIVPDGVLF--GSSKAHKALRQTLVE 340 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 +EA+V LP+ +F ++T + + + + G V + + KR Sbjct: 341 EQKLEAVVKLPSGVFRPYAGVSTAILFFTKTDSAD-TGNVWFYDVRADG---FSLDDKRN 396 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + + +L + + E + + F Sbjct: 397 PVESNDLPDLLARWKNLEGEEGRSRTEQSFF 427 >gi|227872199|ref|ZP_03990565.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268] gi|227841955|gb|EEJ52219.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268] Length = 500 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 73/470 (15%), Positives = 165/470 (35%), Gaps = 81/470 (17%) Query: 38 FTLLRRLECA--LEPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSF------Y 81 ++ L+ L +A+ + + GG +D + F Sbjct: 34 LMFIKDLDDTDNLRAKEAAMLGLPFQSIFAENVDIGGRVVDGSQLKWSTFHDFPANKMYS 93 Query: 82 NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNF 140 E+ + + + N +++S + ++++ A LY + + Sbjct: 94 IVQEWVFPFIKNLHGDKN-----SAYSKYMDDAIFKINTPLMLSKIVDAMDELYSMMEEL 148 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 ++ ++YE+L+ + F TPR ++ + L+ Sbjct: 149 HQTDIR---------GDVYEYLLSKIAQSG--VNGQFRTPRHIIRMMVELM--------- 188 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--------HHKIPPILVPHGQELEPETH 252 P ++ DP CGT GFL + +++ + + + HG +++ Sbjct: 189 -DPNPKDSICDPACGTSGFLVASGDYLRERYKKEVLLDKQNRNHFMNDMFHGYDMDRTML 247 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M+ +E + +I+ +LS + + L+NPPF + D + Sbjct: 248 RIGAMNMMTHGVE-------NPSIEYRDSLSDQNPDKELYSLILANPPFKGNLDADTIST 300 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + + K +LF+ L+ GGR A ++ LF + + Sbjct: 301 DLQKMC-----------KTKKTELLFIALFVRMLK----IGGRCACIVPDGVLF--GSSN 343 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431 +R+ ++EN +EA++++P+ +F ++T + I + V + T Sbjct: 344 AHKALRKEIVENQRLEAVISMPSGVFKPYAGVSTGILIFTKT-NHGGTDNVWFYDMTADG 402 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 + KR I D+ I+ + + E K + D F + ++ Sbjct: 403 ---FSLDDKRSSIKDNDIPDIISRFKNLEQEKDRKRTDKS-FMVSKKEIE 448 >gi|170079467|ref|YP_001736103.1| Type I N6 DNA methyltransferase [Synechococcus sp. PCC 7002] gi|169887136|gb|ACB00848.1| Type I N6 DNA Methyltransferase [Synechococcus sp. PCC 7002] Length = 482 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 83/467 (17%), Positives = 163/467 (34%), Gaps = 80/467 (17%) Query: 30 DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89 D+ + I L+ L+ LE R + +D K Y E Sbjct: 24 DYAEQISWILFLKYLDD-LETDRESKASLTGEKYEPLLDEPYRWKSWAYPRDEKGEL--- 79 Query: 90 TLGSTNTRNNLESYIAS-----------------FSDNAKAIFEDFDFSSTIARLEKAGL 132 + + ++L ++++ F I FS + + Sbjct: 80 -IKTAAVGDDLIAFVSGELFPYFRGFKDYVEPGTFGAKIGEI-----FSGVSNKFQSGYN 133 Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L ++ ++ + +S++YE I G ++ TPR ++ ++ Sbjct: 134 LREVLESIDALRFQT-QQEKHELSDLYETRINNMG-NAGRNGGEYYTPRPLIRAMIRVI- 190 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---KIPPILVPHGQELEP 249 P + T+YD CG+ GFL +A + + +GQE + Sbjct: 191 ---------KPQLGETIYDGACGSAGFLCEAYEFLRPLVKSAAELERLQTATLYGQEKKG 241 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWE 306 + + V +++ +E + NI Q +TL++++ R L+NPPFG K Sbjct: 242 LAYIIGVMNLILHGVE-------APNIIQMNTLTENIQGFQEKDRHDVILANPPFGGKER 294 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 ++ + + LFL H +L++ GGRAA+V+ ++ L Sbjct: 295 EEIKQNFTIA--------------TGETAFLFLQHFIKRLKV----GGRAAVVIKNTFLS 336 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 N S +R+ L + + ++ P F + T + E+ QL Sbjct: 337 NADNAS--RALRQELTSSCNLHTVLDCPAKTFLGAGVKTVVLFFEKGTPTEKIWFYQL-- 392 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 R+ G K +NDD ++ ++ + + S L + Sbjct: 393 -----DPGRSLG-KTNPLNDDDLKEFVEFQSTFRESERSWFLALKDV 433 >gi|332142754|ref|YP_004428492.1| Type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|332142824|ref|YP_004428562.1| Type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327552776|gb|AEA99494.1| Type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327552846|gb|AEA99564.1| Type I restriction-modification system methyltransferase subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 548 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 74/439 (16%), Positives = 142/439 (32%), Gaps = 69/439 (15%) Query: 38 FTLLRRLECALEPT-RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 +RRL+ ++A+ + + + + F N + L Sbjct: 35 LLFIRRLDEIHTARVKNALVMETEIEKPIFGTEQDSYRWSK--FKNQDPQVMFELVRDKI 92 Query: 97 RNNLESYIAS----FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 I F+ + + I + AGLL ++ I++ Sbjct: 93 FP-FIKTINGEDTTFAKHMRD---------AIFMVPTAGLLDRVVTMIDKIDMD----DR 138 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++YE+++ + + S F TPR ++ + + D + DP Sbjct: 139 DTKGDLYEYMLSKL--QSSGTNGQFRTPRHIIQMMVQMTAPKLDGN------KSDVICDP 190 Query: 213 TCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELE-----PETHAVCVAGMLIRRLE 265 GT GFL A +V + + H Q + +++ +E Sbjct: 191 ASGTCGFLMAAEEYVRNTQGGALMRPENSKHFHNQMFNAYDFDQHMLRIGAMNLMLHGVE 250 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDK-------------D 310 ++ +LS +F L+NPPF D Sbjct: 251 H-------PVVEYRDSLSDQGEHNIKDKFTLILANPPFKGSVSYDDLAPDLLTALGKTPK 303 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + E G +LFL + L+ GGRAA+V+ LF + Sbjct: 304 KATAKTETDEEGNKKKKKGPSEKTELLFLALILRMLQP----GGRAAVVVPDGVLF--GS 357 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 EIR+ L+E +EA+V+LP+ +F ++T + + + V + Sbjct: 358 TKSHKEIRKTLVEEHKLEAVVSLPSGVFKPYAGVSTAILFFTKT-NDGGTDNVWFYD--- 413 Query: 430 LWTSIRNEGKKRRIINDDQ 448 + + KR + +Q Sbjct: 414 MQADGFSLDDKRTPLIKEQ 432 >gi|322804998|emb|CBZ02558.1| type I restriction-modification system,DNA-methyltransferase subunit M [Clostridium botulinum H04402 065] Length = 485 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 80/499 (16%), Positives = 179/499 (35%), Gaps = 71/499 (14%) Query: 38 FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 F ++ L+ L + + + + F G + +++ + F N + + S Sbjct: 35 FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDKQYLRWSK--FKNEEAGEMYRIVSQE 90 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 ++ D F ++ +L KI +E+ Sbjct: 91 VFPFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNLEIE----DKDTK 141 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++YEHL+ + F TPR ++ + L+ P + DP G Sbjct: 142 GDLYEHLLS--NISAAGMNGQFRTPRHIIKMMVELM----------KPTPEDIIVDPAMG 189 Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 T GFL ++ + S + + +G +++ + M++ ++ Sbjct: 190 TAGFLVKLEEYLREKHSELFLVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + NI+ +LS+ +++ L+NPPF + + + + + Sbjct: 247 ----NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADL-----------LKV 291 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LFL L+ GGR A ++ LF + G +IRR + +N+ +E Sbjct: 292 SKTKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIADNNKLE 345 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 AI+++P+ +F ++T + I + KV + + KR I D+ Sbjct: 346 AIISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKSDGY---SLDDKRNPIEDN 401 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 I++ + + + + + + F + V ++ L +E + ++ Sbjct: 402 DIPDIIERFNNLDKEENRKRTEQSFF----VPVEEIRENNYDLSINKYKEIEYE----EV 453 Query: 508 SPLHQSFWLDILKPMMQQI 526 L+ +K + ++I Sbjct: 454 VYDEPKVILERVKKLEKEI 472 >gi|253578028|ref|ZP_04855300.1| type I restriction-modification system methyltransferase subunit [Ruminococcus sp. 5_1_39B_FAA] gi|251850346|gb|EES78304.1| type I restriction-modification system methyltransferase subunit [Ruminococcus sp. 5_1_39BFAA] Length = 510 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 69/420 (16%), Positives = 142/420 (33%), Gaps = 56/420 (13%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 I ++ +L KI I + ++YE+L+ + + F T Sbjct: 129 RDAIFKVPTPLMLDKIVTTMDAIYEQMEQIKSADTRGDVYEYLLSKLATAG--VNGQFRT 186 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232 PR ++ + ++ P + DP CGT GFL A ++ D Sbjct: 187 PRHIIRMMVEMM----------DPKADEIICDPACGTSGFLVAASEYLRDKKKQEVLFNR 236 Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + HG +++ + M+ +E + I+ +LS ++ Sbjct: 237 QNKEHYMNHMFHGYDMDRTMLRIGAMNMMTHGVE-------NPYIEYRDSLSDQNTDKEK 289 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF K D D V + K +LFL L+ Sbjct: 290 YSLILANPPF--KGSLDYDIVSADLLKVC---------KTKKTELLFLALFIRMLK---- 334 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A ++ LF + + IR+ L+E + +EA++++P+ +F ++T + I Sbjct: 335 IGGRCACIVPDGVLF--GSSTAHKAIRKALVEENRLEAVISMPSGVFKPYAGVSTAILIF 392 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464 + KV + + + KR ++ I++ + R+ Sbjct: 393 TKT-GHGGTDKVWFYD---MKADGFSLDDKRTETKENDIPDIIERFRNLDKETDRKRTDQ 448 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 S + + + +T + + L+ ++ Sbjct: 449 SFFVPKEEIAENGYDLSINKYKEIEYVPVEYPSTQEIMTELHEIEMKIGEEMQALEELLG 508 >gi|163785377|ref|ZP_02180005.1| type I restriction-modification system specificity subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159879355|gb|EDP73231.1| type I restriction-modification system specificity subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 217 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 37/225 (16%) Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 FGY +I V RPLR+ +L L E I +K L++LK + + + Sbjct: 3 FGYYKITVERPLRLKVVLSDENLKSFEEAIKSKKKKKEADYRLLEVLKDISKDLTDEYIY 62 Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----------------- 575 + + + +K + KD A PV Sbjct: 63 DFNKFLRLIEKK----GIKINSENKKLIQKYLTEKDENAKPVIKEIYKNKEADRLYGFFE 118 Query: 576 -DVNG-----EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627 D++G E+ PDT+L ENVP LE I+ +F REV P+V DA+I+K I Sbjct: 119 IDIDGKKVVVEYEPDTDLRNTENVPLLEEGGIEGFFEREVLPYVTDAWINKDNI------ 172 Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 ++GYEI+F ++FY+ + R+L +I +LK ++ + LL+E+ Sbjct: 173 --KIGYEISFTKYFYKPEKLRELDEIVLDLKNLQEETEGLLDEIL 215 >gi|270647276|ref|ZP_06222191.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] gi|270317229|gb|EFA28814.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] Length = 173 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 100/167 (59%), Gaps = 16/167 (9%) Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328 LS F G F + LSNPP+GK W KD+ ++ ++ RF Sbjct: 8 LSTISFQGNHFDFMLSNPPYGKNWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNEETLDAT 66 Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 P+ SDG +LFLM + NK++ P N G R A V + S LF G AGSGES IRR ++ENDL Sbjct: 67 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 126 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A L+ Sbjct: 127 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRK 173 >gi|260549263|ref|ZP_05823483.1| N-6 DNA methylase [Acinetobacter sp. RUH2624] gi|260407669|gb|EEX01142.1| N-6 DNA methylase [Acinetobacter sp. RUH2624] Length = 492 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 157/453 (34%), Gaps = 72/453 (15%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ E + +D E + ++ + Sbjct: 34 LFLKFLDD-YESEKEDESVLSGKDYQPVLDEEHRWSNWACPKNEEGKLDINKARTGDDLT 92 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTI--------ARLEKAGLLYKICKNFSGIEL 145 L Y+ F++ A + F+ I ++ L ++ + Sbjct: 93 DYVNEKLFPYLKGFANTAVTGNDKQSFAYKIGAIFQYLDNKVASGHTLREVLDIVDSLNF 152 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 +S +YE L++ G + A +F TPR VV + P Sbjct: 153 Q-SESDLFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMVQAI----------DPKP 200 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETHAVCVAGML 260 T+YD G+ GFL +A H+ D G E + + + M+ Sbjct: 201 GETIYDAAAGSCGFLVEAFEHLRDKKNQLSTEQWDFIQRDTLFGYEKTSLAYVMGMMNMI 260 Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + +E S N+ +G+TL++ D+ R+ L+NPPFG K + Sbjct: 261 LHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKSQIQQNF---- 309 Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 P S+ +LFL H L+ GG+AAIV+ LF + S + Sbjct: 310 -----------PIQSNATELLFLQHFMKTLKS----GGKAAIVVPEGVLF--QTNSAFKQ 352 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +++ LLEN + I++LP +F + + T + V Sbjct: 353 VKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSDVWYYECEPEQKLT- 408 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 K + I D+ ++ +++Y SRE + S + Sbjct: 409 ----KNKPITDEHLKEFVELYKSRETTERSWTV 437 >gi|323358027|ref|YP_004224423.1| type I restriction-modification system methyltransferase subunit [Microbacterium testaceum StLB037] gi|323274398|dbj|BAJ74543.1| type I restriction-modification system methyltransferase subunit [Microbacterium testaceum StLB037] Length = 494 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 89/512 (17%), Positives = 174/512 (33%), Gaps = 80/512 (15%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL-------------ESFVKVAGYSFY 81 I ++RL+ + +K FG + F + F Sbjct: 32 ITYLLFIKRLD----ELHTKAEQKAARFGDPIQNPIFPDGYDSDLPGRRPFRDLRWSVFT 87 Query: 82 NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 N S + + S + L A S A+ + + LL K+ + Sbjct: 88 NYSPAEMFDVVSEHVFPWLRRLGAQGSSYAR------NMRDARFTIPTPALLTKVVDLLA 141 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 I + +IYE+++ R + F T R ++ L L + Sbjct: 142 EIPME----DRDTKGDIYEYMLLRLSTSG--TNGQFRTARHIIQLMVDL----------Q 185 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAV 254 P + DP GT GFL A ++ + G + + + Sbjct: 186 QPRPDDRIIDPAVGTAGFLITAEEYLRAHHPEIWTDAATRAHFNGPMFTGYDSDASMARI 245 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 ML+ +E + I++ +LS+ + L+NPPF D + V K Sbjct: 246 ASMNMLLHGVE-------NPTIERADSLSEGHPGLNEYTLVLANPPFAGSL--DYETVAK 296 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + + R +LFL+ + L GGRAA+++ LF + + Sbjct: 297 DLQKVVKTR---------KTELLFLVLMIRMLR----NGGRAAVIVPEGVLF--GSSNAH 341 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +R+ L++ ++A++ LP+ F T ++T + + + + V + + Sbjct: 342 KAVRKMLVDEHKLDAVIKLPSGTFKPYTGVSTAILLFTKT-SSGGTDHVWFYDVRADGMT 400 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 KR I + +L + R + + +R ++F + +++ + L Sbjct: 401 ---LDDKRTPIEANDLPDVLARWRER-DAEAARARTDQSFVVPKQEIVDN---DYDLSLN 453 Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 +E + SPL LD L+ +Q Sbjct: 454 RYKEIEIE-EVEHRSPLKILDELDALEVGIQD 484 >gi|301055839|ref|YP_003794050.1| type I restriction modification system subunit M [Bacillus anthracis CI] gi|300378008|gb|ADK06912.1| type I restriction modification system M subunit [Bacillus cereus biovar anthracis str. CI] Length = 484 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 79/475 (16%), Positives = 162/475 (34%), Gaps = 69/475 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L+ E T+ + A +F K + +N L + Sbjct: 35 LLFIKGLDEV-EATKES-----EAMFLGIEYEGTFPKEKQHLRWNK----FKNLEAKQMF 84 Query: 98 NNLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 + + + F N + I + +L KI IE+ Sbjct: 85 DVVSKEVFPFIKNLHGKKDSAYAKYMDDAIFMIPTPQMLTKIVDGIDNIEMK----DRDT 140 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++YE+L+ + + F TPR ++ + L+ P + DP Sbjct: 141 KGDLYEYLLLKVATAG--TNGQFRTPRHIIDMIVELM----------KPTPEDIIVDPAA 188 Query: 215 GTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 G+ GFL + ++ S + + HG +++ + M++ +E Sbjct: 189 GSAGFLVSSGEYLRKNHSDLFLVQGLKQHFNNDMFHGFDMDRTMLRIGAMNMMLHGVE-- 246 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + NIQ +LS+ ++ L+NPPF + + + + Sbjct: 247 -----NPNIQYQDSLSESNKDEDKYTLVLANPPFKGSLDYEAVSADL-----------LK 290 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + K +LFL L+ GGR A ++ LF + +IR+ ++E + Sbjct: 291 VTKTKKTELLFLALFIRMLK----AGGRCASIVPDGVLF--GSTKAHKDIRKEIIEKHKL 344 Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 EAIV++P+ +F ++T + I + V + + KR I+ Sbjct: 345 EAIVSMPSGVFKPYAGVSTAIIIFTKT-GVGGTENVWFYDMEADGY---SLDDKRSPIDA 400 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 + ++ + S E K + + F + V + + L +E + Sbjct: 401 NDIPDLVTRFHSLEREKERKRTEQSFF----VPVEEIVENGYDLSINRYKEIEYE 451 >gi|291547735|emb|CBL20843.1| Type I restriction-modification system methyltransferase subunit [Ruminococcus sp. SR1/5] Length = 544 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 89/550 (16%), Positives = 189/550 (34%), Gaps = 81/550 (14%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 ++ +I L + L V + + +++ Sbjct: 30 DGNEYK-IITQVFLYKFLNDKFGYEVKKVSPVLKNAEKWELAYAEMSEDDRLDIFDSLPS 88 Query: 87 SLSTLGSTNTRNNL------ESYIASFSDNAKAIFED-FDFSST----------IARLEK 129 + L + NL + F I + D ST +L + Sbjct: 89 DIPLLNPEHLIANLWNQQAKGDFDLIFDSTMTDIADKNIDIFSTQTAQNTKIPLFEKLTQ 148 Query: 130 -----------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 A L NFS E +I+E+LI+ + + ++ Sbjct: 149 YVTDDTARAPFARALVDKLVNFSFEEAFEKHYDFFA--DIFEYLIKDYNTAGGGKYAEYY 206 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL+ L YDP+ GTG L + + + Sbjct: 207 TPHAIATIMARLLVGNATDLHSIE------CYDPSAGTGTLLMALAHKIGE--------D 252 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------TGKRF 292 Q++ ++ + +++ + + QG TL + F Sbjct: 253 KCTIFAQDISQRSNKMLKLNLIL-----NSLVSSLDHAIQGDTLIAPYHKSDNGQELRTF 307 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANK 345 Y +SNPPF + ++ + RF G+PK SM LF+ H+ N Sbjct: 308 DYVVSNPPFKMDFSDTRERIAA-----MPVRFWAGVPKVPAKKKESMAIYTLFIQHVLNS 362 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G+ AIV+ + F E +I + +++ ++ +++P+++F T Sbjct: 363 LKST----GKGAIVVPTG--FVTAKSGVEKKILQHIVDEHIVYGCISMPSNVFANTGTNV 416 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464 + N + KV LI+A+ L ++ ++R + D + +I+D ++++E F Sbjct: 417 SVLFFDN---SRKTDKVVLIDASKLGEEYKDGNNQKRRLRDFEIDKIVDTFLNKEAVDDF 473 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKP 521 S + Y ++ + ++ L++ E + + Q ++ + + Sbjct: 474 SVAVTYDEIKEKKYSLAAGQYFDVKIEYVELSQDEFNARMSAYAEKLQEYFAEGDKLKTE 533 Query: 522 MMQQIYPYGW 531 +M+Q+ + Sbjct: 534 IMEQLKKVKY 543 >gi|289208799|ref|YP_003460865.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix] gi|288944430|gb|ADC72129.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix] Length = 495 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 81/463 (17%), Positives = 155/463 (33%), Gaps = 76/463 (16%) Query: 38 FTLLRRLECALEPTRSA---VREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLG 92 L+ L+ V + Y ++ K A +F + + + L Sbjct: 32 MLFLKYLDDLEYERAQEAELVGKSYQYIIDEPYRWSAWAAPKKADGTFDHDEALTGADLI 91 Query: 93 STNTRNNLESYIASFSDNAK--AIFE-DFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147 ++L Y+ F A E FS + L + G+ Sbjct: 92 G-FVNDDLFPYLQGFRTRATGPDTLEYKIGEIFSEIRNKFSSGYSLRDALELIDGLSFR- 149 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S++YE IR G ++ TPR ++ ++ P + Sbjct: 150 SQKEKHELSHLYEAKIRNMG-NAGRNGGEYYTPRPLIRAMIQVV----------KPRIGE 198 Query: 208 TLYDPTCGTGGFLTDAMNHVAD---------------CGSHHKIPPILVPHGQELEPETH 252 +YD G+ GFL +A +++ S + +E + + Sbjct: 199 RIYDAAAGSAGFLCEAHDYLRYGPDGQGDGKRDGSHLSISDLNTLQTRTFYAKEKKSLPY 258 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDK 309 + + +++ +E + N+ ++L++ D+ RF L+NPPFG K K+ Sbjct: 259 VIGIMNLILHGIE-------APNVIHTNSLTENLSDIQEKDRFDVILANPPFGGKERKEV 311 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 K + + LFL H L+ GGR A+V+ ++ L N Sbjct: 312 QQNFPI--------------KTGETAFLFLQHFIKYLK----AGGRTAVVIKNTFLSNSD 353 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 S +R+ LL++ + I+ P F + T + + QL Sbjct: 354 NAS--RALRKELLQSCNLHTILDCPGGTFLGAGVKTVVLFFDKGAPTRKLWYYQL----- 406 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 R+ G K +NDD + + ++ S +D + Sbjct: 407 --DPGRSLG-KTNPLNDDDLKDFVARQAGFDDSDNSWTVDVQD 446 >gi|148927363|ref|ZP_01810894.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1] gi|147887262|gb|EDK72723.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1] Length = 347 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 33/299 (11%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V IYE L +F S+ GA + TPR ++ T L P +T+ Sbjct: 17 DVDVKGEIYEGLFEKFASDTKTGAGQYFTPRPLIQAMTECL----------RPEPSKTMA 66 Query: 211 DPTCGTGGFLTDAMNHVADC---GSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLES 266 D GTGGF +++A+ K G E+ P T +C+ + + + Sbjct: 67 DFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTFTGNEIVPATARLCLMNLFLHNI-- 124 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE--KDKDAVEKEHKNGELGRF 324 D I +L+ D +GKRF Y L NPPFGKK + + ++ R Sbjct: 125 -GDMDSKPPIHLTDSLASD--SGKRFDYILMNPPFGKKSSITVSNEDGTQSKESLTYERQ 181 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 S+ + F+ H+ ++L++ G+AA+++ + LF G A GE+ IR+ LL+ Sbjct: 182 DFWTT-TSNKQLNFVQHICSQLKVD----GKAAVIVPDNVLFEGGA--GET-IRKKLLQT 233 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--RRGKVQLIN--ATDLWTSIRNEGK 439 I I+ LPT +F+ + + NR + + V + + +T + +G+ Sbjct: 234 TEIHTILRLPTGIFYANGVKANVIFFDNRPASKEVQTKDVWVYDMRTNQHFTLLTADGR 292 >gi|91203220|emb|CAJ72859.1| similar to type I restriction modification enzyme M chain [Candidatus Kuenenia stuttgartiensis] Length = 484 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 87/502 (17%), Positives = 172/502 (34%), Gaps = 71/502 (14%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGST 94 L+ L+ + ++A + Y E + G + Sbjct: 33 LFLKYLDDFEKDKKTAAELAGKYYEGIIDKQYKWEVWAVPKGKDGKIDHHKALTGDDLKD 92 Query: 95 NTRNNLESYIASF--SDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + L Y+ F S + E FS +++ L ++ + Sbjct: 93 FVDHKLFPYLKKFKTSAESADTIEYKVGEIFSELKNKIQSGYNLREVINRIDELRFR-SH 151 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 MS++YE+ I+ G ++ TPR ++ ++ +P + + Sbjct: 152 AEKHEMSHLYENKIKNMG-NAGRNGGEYYTPRPLIKTIVKVV----------APTIGNKV 200 Query: 210 YDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 YD + GFL +A ++ + +G+E + + + M++ +E Sbjct: 201 YDGAVASAGFLAEAFEYLKTSKNLTTKDAETLQKRTFYGKEKKSLAYIIGTMNMILHGIE 260 Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + NI +TL++ D+ R+ L+NPPFG K + Sbjct: 261 -------APNIVHTNTLTENMADIQEKDRYDVILANPPFGGKERTEVQQNFPI------- 306 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 K + + LFL H L+ GG+A +V+ ++ L N S +R+ LL Sbjct: 307 -------KTGETAFLFLQHFIKILK----AGGKAGVVIKNTFLSNTDNAS--VSLRKLLL 353 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E+ + ++ LP F + T + + QL R G K Sbjct: 354 ESCNLHTVLDLPGGTFTGAGVKTVVLFFEKGVPTQNVWFYQL-------NLDRKLG-KTN 405 Query: 443 IINDDQRRQILDIYVSRENGKFSR-----MLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 +N++ + +++ ++ N + S +D TFG + V P + + Sbjct: 406 PLNENDLAEFVELQKTKANSENSWSVNVADVDKTTFG---LSVKNPHKKDEPALREPGII 462 Query: 498 LEADITWRKLSPLHQSFWLDIL 519 L+ + S + L IL Sbjct: 463 LDEMKALDEESEMIFKNILRIL 484 >gi|331085651|ref|ZP_08334734.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406574|gb|EGG86079.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 687 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 64/419 (15%), Positives = 144/419 (34%), Gaps = 56/419 (13%) Query: 122 STIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 I ++ +L KI + I ++YE+L+ + + F TP Sbjct: 308 DAIFKVPTPLMLDKIVTSMDSIYEQMAQLKSADTRGDVYEYLLSKLATAG--VNGQFRTP 365 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------ 234 R ++ + ++ P + DP CGT GFL A ++ + Sbjct: 366 RHIIRMMVEMM----------DPKADEIICDPACGTSGFLVSASEYLKETKKEEVFFNKQ 415 Query: 235 --KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + HG +++ + M+ ++ + I+ +LS +++ Sbjct: 416 NKNHYMNHMFHGFDMDRTMLRIGAMNMMTHGVD-------NPYIEYRDSLSDQNSDKEKY 468 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPF + D + + + K +LFL L+ Sbjct: 469 SLILANPPFKGSLDYDTVSADL-----------LKVCKTKKTELLFLALFIRMLK----I 513 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411 GGR A ++ LF + +IR+ ++E + +EA++++P+ +F ++T + I + Sbjct: 514 GGRCACIVPDGVLF--GSSKAHKDIRKAIVEENRLEAVISMPSGVFKPYAGVSTAILIFT 571 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFS 465 V + + + KR I ++ I++ + R+ + S Sbjct: 572 KT-GHGGTDNVWFYD---MKADGLSLDDKRTEIKENDIPDIIERFRNLDKEVDRKRTEQS 627 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + + +T + + +D L+ ++ Sbjct: 628 FFVTKQEIADNGYDLSINKYKEIEYVPVEYPSSQEIMTDLRELEMKIGEEMDALEQLLG 686 >gi|295110205|emb|CBL24158.1| Type I restriction-modification system methyltransferase subunit [Ruminococcus obeum A2-162] Length = 500 Score = 174 bits (441), Expect = 4e-41, Method: Composition-based stats. Identities = 62/368 (16%), Positives = 132/368 (35%), Gaps = 56/368 (15%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I +L +L K+ + I + + + + ++YE+L+ + F T Sbjct: 120 DDAIFKLPTPLVLSKVVDSLDEIYIMMNEIQTADVRGDVYEYLLSKIAQSG--LNGQFRT 177 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234 PR ++ + ++ P + DP CGT GFL A ++ + Sbjct: 178 PRHIIRMMVEMM----------DPSSDEVICDPACGTSGFLVAAGEYLKEKRKEEIFFDK 227 Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG +++ + M+ +++ I+ +LS + Sbjct: 228 QKKDHYMNHMFHGYDMDRTMLRIGAMNMMTHGIDNPF-------IEYRDSLSDQNQDKDK 280 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + + + + + K +LFL L+ Sbjct: 281 YSLILANPPFKGSLDAESVSGDL-----------LKVCKTKKTELLFLALFLRMLK---- 325 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A ++ LF + IR+ ++EN +EA++++P+ +F ++T + I Sbjct: 326 IGGRCACIVPDGVLF--GSSKAHKSIRKEIVENQRLEAVISMPSGVFKPYAGVSTAILIF 383 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464 + V + T + KR ++ I++ + R+ Sbjct: 384 TKT-EHGGTDNVWFYDMTADGL---SLDDKRVPTAENDIPDIIERFRNLDKEVDRKRTDK 439 Query: 465 SRMLDYRT 472 S M+ + Sbjct: 440 SFMVPKQD 447 >gi|237653839|ref|YP_002890153.1| N-6 DNA methylase [Thauera sp. MZ1T] gi|237625086|gb|ACR01776.1| N-6 DNA methylase [Thauera sp. MZ1T] Length = 512 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 73/432 (16%), Positives = 161/432 (37%), Gaps = 71/432 (16%) Query: 35 ILPFTLLRRLEC--ALEPTRSAVREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 I +RRL+ LE +++ + ++ + G++ ++ + F N + + Sbjct: 32 ITYLLFIRRLDDGHTLEESKATLLKRPMTNRIFPEGTDPKGRAYDDLRWSRFKNFAPAEM 91 Query: 89 STLGSTNTRNNLESYIAS---FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 + + L + +S + K F + GLL K+ + + Sbjct: 92 FEVVGEHVFPFLRTRGGDGSTYSHHMKD--ARF-------TIPTPGLLAKVVDMLDHVPM 142 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++YE+++ + + F TPR ++ L L +P Sbjct: 143 E----DRDTKGDLYEYMLGKIAAAG--QNGQFRTPRHIIKLMVEL----------TAPAP 186 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAG 258 + DP GT GFL A ++ + + + HG + + + Sbjct: 187 KDVICDPASGTCGFLVAAGEYLREKHPALFNDAPAREHFHHGMFHGYDFDNTMLRIGSMN 246 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M + ++ + +I+ +L++D +++ L+NPPF + + A + Sbjct: 247 MALHGVD-------NPDIRYKDSLAQDHAGDEEKYSLILANPPFAGSLDYENTAKDL--- 296 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 L K +LFL L+ GGRAA+++ LF + E+ Sbjct: 297 --------LALVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKEL 342 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 RR ++E ++A+++LP+ F ++T + I + + +V + + R+ Sbjct: 343 RRMIVEEQKLDAVISLPSGCFKPYAGVSTAILIFTKTDSG-GTDQVWFYD---MLADGRS 398 Query: 437 EGKKRRIINDDQ 448 KR+ + ++ Sbjct: 399 LDDKRQPLLPEE 410 >gi|168178056|ref|ZP_02612720.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC 2916] gi|182670476|gb|EDT82450.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC 2916] Length = 485 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 78/497 (15%), Positives = 174/497 (35%), Gaps = 67/497 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 F ++ L+ + + L + + F N + + S Sbjct: 35 FLFIKDLDE--NEKLAESDAELLGIPFEGMFPSDRQYLRWSKFKNEEAGEMYRIVSQEVF 92 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 ++ D F ++ +L KI +E+ + Sbjct: 93 PFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNLEI----QDKDTKGD 143 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ + L+ P + DP GT Sbjct: 144 LYEYLLSKVATAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMGTA 191 Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 GFL A ++ + S + +G +++ + M++ ++ Sbjct: 192 GFLVGAEEYLREKHSELFLVQGLKDHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD----- 246 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NI+ +LS+ +++ L+NPPF + + + + + K Sbjct: 247 --NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADL-----------LKVSK 293 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L+ GGR A ++ LF + G +IRR +++N+ +EAI Sbjct: 294 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLEAI 347 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +++P+ +F ++T + I + KV + + KR I D+ Sbjct: 348 ISMPSGVFKPYAGVSTAIIIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDNDI 403 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 I++ + + + + + + F + V ++ L +E + ++ Sbjct: 404 SDIIERFNNLDKEEDRKRTEQSFF----VPVDEIRENNYDLSINKYKEIEYE----EVVY 455 Query: 510 LHQSFWLDILKPMMQQI 526 L+ +K + ++I Sbjct: 456 DEPKVILERVKKLEKEI 472 >gi|301057181|ref|ZP_07198312.1| N-6 DNA Methylase [delta proteobacterium NaphS2] gi|300448739|gb|EFK12373.1| N-6 DNA Methylase [delta proteobacterium NaphS2] Length = 326 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 79/362 (21%), Positives = 132/362 (36%), Gaps = 63/362 (17%) Query: 58 KYLAFGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSD 109 +Y G+ S + + FY L + ++ I + Sbjct: 3 QYAKLKGTRREKPVSEIAIEKCGFYLPDHARYDHLLKLPEEQDIAKAIKKAMEAIEEYKP 62 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 K I ++ + ++ KNFS I P+ + IYE+ + F Sbjct: 63 ELKGILPQDEYFRLTRT--DKSIPMQLLKNFSDI---PEDAAGDMFGQIYEYFLGNFAMA 117 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 +G +F TPR VV L ++ T++DP CG+GG + + Sbjct: 118 EGQGGGEFFTPRSVVRLMVEIIEPHRG-----------TVFDPACGSGGMFVQSAKFIRR 166 Query: 230 CGSH-HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 L +GQE ET + + + L D I+Q +T +D F Sbjct: 167 HRHEMANGNGDLFVYGQEKTLETVKLAKMNLAVNGLRGD--------IRQANTYYEDPFE 218 Query: 289 GK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------IS 332 +F Y L+NPPF K + RF G+P+ + Sbjct: 219 SFGQFDYVLTNPPFNVDDVSLK-------RVETDKRFNTYGIPRKKTKAKKKDQGNETVP 271 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + L++ A L+ GRAA+V+++S A E+EIR+ L+ N+LI + Sbjct: 272 NANYLWINLFATSLKPE----GRAALVMANSA---SDARHSEAEIRKTLIRNNLIYGTLT 324 Query: 393 LP 394 LP Sbjct: 325 LP 326 >gi|309800154|ref|ZP_07694340.1| type I restriction modification system M subunit [Streptococcus infantis SK1302] gi|308116201|gb|EFO53691.1| type I restriction modification system M subunit [Streptococcus infantis SK1302] Length = 485 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 79/501 (15%), Positives = 171/501 (34%), Gaps = 66/501 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNT 96 ++ L+ + +++ G + + + + L + Sbjct: 35 LLFMKDLDRVELGRENDAEFLGISYEGIFPKDKPEYRWS----------TFKNLGDAQEV 84 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVM 155 + I F N K +D FS + + + + K + ++ P + + Sbjct: 85 YRLMSQEIFPFIKNLKGDTDDTAFSRYMKDAIFQINKPATLQKAIAALDELP--TDIKDI 142 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +IYE+L+ + + F TPR ++ + L+ + DP G Sbjct: 143 GDIYEYLLSKLSQAGA--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMG 190 Query: 216 TGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + GFL A ++ K + HG + + + M++ +E Sbjct: 191 SAGFLVSASRYLDRRKEEWQTNIDSVKHFHNTMFHGNDTDTTMLRLGAMNMMLHGVE--- 247 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + I +LS+D ++ L+NPPF + D + + Sbjct: 248 ----NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTSGDL-----------LAT 292 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LFL L+ GGRAA+++ LF + IR+ ++E+ ++ Sbjct: 293 IKTKKTELLFLALFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVEHHKLD 346 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 A++++P+ +F ++T + I + KV + + + KR+ IN++ Sbjct: 347 AVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPINEN 402 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 I+ + E + D F + V F L +E + + Sbjct: 403 DIPDIIQRFHQLEKEVDRKRTDQSFF----VPVDEIKENDFDLSINKYKEIEYEKVEYEP 458 Query: 508 SPLHQSFWLDILKPMMQQIYP 528 + + D+ K + + Sbjct: 459 TEVILKKINDLEKEIQAGLAE 479 >gi|295112012|emb|CBL28762.1| Type I restriction-modification system methyltransferase subunit [Synergistetes bacterium SGP1] Length = 500 Score = 174 bits (440), Expect = 6e-41, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 145/421 (34%), Gaps = 60/421 (14%) Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 I ++ +L KI GI + ++YE+L+ + + F TP Sbjct: 121 DAIFKVPTPLMLDKIVTAMDGIYEQMAQLNAADTRGDVYEYLLSKIATAG--VNGQFRTP 178 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------- 232 R ++ + ++ P + DP CGT GFL +++ + Sbjct: 179 RHIIRMMVDMM----------EPKADEIVCDPACGTSGFLVAVSDYLKENRKQEVFFNSQ 228 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 + + HG +++ + M+ +++ I+ +LS +++ Sbjct: 229 NKDHYMNHMFHGYDMDRTMLRIGAMNMMAHGVDNPF-------IEYRDSLSDQNPDREKY 281 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPF K D D V + R +LFL L++ Sbjct: 282 TLILANPPF--KGSLDADIVSTDLLKVCKTR---------KTELLFLALFLRMLKV---- 326 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411 GGR A ++ LF + + +R+ L+E + +EA++++P+ +F ++T + I + Sbjct: 327 GGRCACIVPDGVLF--GSSTAHKAVRKELIEGNRLEAVISMPSGVFRPYAGVSTAILIFT 384 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFS 465 KV + + KR ++ I+ + R+ + S Sbjct: 385 RT-GHGGTDKVWFYDMKADGY---SLDDKRSETKENDVPDIVARFHALDTEQDRKRTEQS 440 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILKPMM 523 + + + KL L + +D L+ ++ Sbjct: 441 FFVPKEEIVGNDYDLSLNKYRQTEY--KAVEYPPTSEIMAKLDELEREIGADMDALRELL 498 Query: 524 Q 524 + Sbjct: 499 E 499 >gi|255284466|ref|ZP_05349021.1| putative type I restriction-modification system, M subunit [Bryantella formatexigens DSM 14469] gi|255264976|gb|EET58181.1| putative type I restriction-modification system, M subunit [Bryantella formatexigens DSM 14469] Length = 500 Score = 174 bits (440), Expect = 6e-41, Method: Composition-based stats. Identities = 63/368 (17%), Positives = 133/368 (36%), Gaps = 56/368 (15%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I +L +L K+ + I + + + ++YE+L+ + F T Sbjct: 120 DDAIFKLPTPLVLSKVVDSLDEIYKMMNEIQIADVRGDVYEYLLSKIAQSG--RNGQFRT 177 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234 PR ++ + ++ P + DP CGT GFL A ++ + Sbjct: 178 PRHIIRMMVEMM----------DPSSDEVICDPACGTSGFLVAAGEYLKENRKEEIFFDK 227 Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + HG +++ + M+ +++ I+ +LS + Sbjct: 228 QKKDHYMNHMFHGYDMDRTMLRIGAMNMMTHGIDNPF-------IEYRDSLSDQNPDKDK 280 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF + + + + + K +LFL L+ Sbjct: 281 YSLILANPPFKGSLDAESVSGDL-----------LKVCKTKKTELLFLALFLRMLK---- 325 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR A ++ LF + +IR+ ++EN +EA++++P+ +F ++T + I Sbjct: 326 IGGRCACIVPDGVLF--GSSKAHKDIRKEIVENQRLEAVISMPSGVFKPYAGVSTAIIIF 383 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKF 464 + V + T + KR I ++ I+ + + R+ Sbjct: 384 TKT-EHGGTDYVWFYDMTADG---FSLDDKRTPIAENDIPDIIGRFKNLDKETERKRTDK 439 Query: 465 SRMLDYRT 472 S M+ + Sbjct: 440 SFMVPKQD 447 Score = 37.6 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 632 GYEINFNRFF---YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671 GY+++ N++ Y +I A+++ +E +I ++E+ Sbjct: 452 GYDLSINKYKEIEYVPVEYPPTSEIMADIREIEREIGKEMDEL 494 >gi|224419061|ref|ZP_03657067.1| type I restriction-modification system, M subunit [Helicobacter canadensis MIT 98-5491] gi|253828001|ref|ZP_04870886.1| type I restriction-modification system, M subunit [Helicobacter canadensis MIT 98-5491] gi|313142569|ref|ZP_07804762.1| HsdM [Helicobacter canadensis MIT 98-5491] gi|253511407|gb|EES90066.1| type I restriction-modification system, M subunit [Helicobacter canadensis MIT 98-5491] gi|313131600|gb|EFR49217.1| HsdM [Helicobacter canadensis MIT 98-5491] Length = 499 Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 87/462 (18%), Positives = 170/462 (36%), Gaps = 73/462 (15%) Query: 39 TLLRRLECALEPTRSAVREK---YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ L+ + Y + S +S+ + + Sbjct: 32 LFLKFLDDYERELKDEAFLNDVPYASILDSQYAWQSWAAPKKDGKLDVKNALSGSDLLEF 91 Query: 96 TRNNLESYIASFSDN------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 N L Y+ SF +N A I F+F R+ L ++ + Sbjct: 92 VNNELFPYLKSFKNNEDFKSIAYKIGGIFEFID--NRIANGHTLREVINLIDELSFS-KE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + ++YE L++ GS+ + +F TPR +V + ++ +P + Sbjct: 149 SDVFALGDVYEKLLKDMGSDGG-NSGEFYTPRALVKVMVEVI----------NPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAG 258 YDP CG+ GFL ++ H+ + G+E P ++A+ V Sbjct: 198 YDPACGSCGFLVESFLHILYEDRAKGQKANLSVEELEFLQKDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ ++ S NI + +TLSK D+ +R+ L+NPPFG K ++ Sbjct: 258 MILHGIK-------SPNIIKTNTLSKRITDITESERYEVILANPPFGGKEKEQIQ----- 305 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 G + + +LFL H+ L+ GR AI++ LF + Sbjct: 306 ---------GNFIVPSNATELLFLQHILKSLKT----NGRCAIIVPEGVLFQN--SNAFV 350 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT---EERRGKVQLINATDLW 431 ++++ L+EN +E +++LP+ +F + + T + S +E+ V + Sbjct: 351 KVKQDLIENYNLECVLSLPSGVFLPYSAVKTNVLFFSKGLRGIVDEQDSNVYYYELIPPY 410 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K + + ++ L+ Y R+ S ++ Sbjct: 411 KLT-----KNKPLEYVHFKEFLECYKQRKITPHSYLVSLEEL 447 >gi|260425081|ref|ZP_05734132.2| type I restriction enzyme M protein [Dialister invisus DSM 15470] gi|260404084|gb|EEW97631.1| type I restriction enzyme M protein [Dialister invisus DSM 15470] Length = 561 Score = 173 bits (438), Expect = 9e-41, Method: Composition-based stats. Identities = 92/543 (16%), Positives = 191/543 (35%), Gaps = 83/543 (15%) Query: 28 HTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS-E 85 +++ I+ L + L E DL + + Y F S Sbjct: 47 SSEYK--IITEVFLYKFLNDKFLYEVRQADEGLKNSTNIEADLSAMDDES-YDFLLASLP 103 Query: 86 YSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYKIC 137 + + L + R N + + F D I +F+ + E L+ Sbjct: 104 PTTAQLKKEHFISYLFNRKNTDKFNELFDDTLIDI-ANFNIDVFSVKTGSEDKIRLFDAI 162 Query: 138 KNFSGIELHPDTV-------------------PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F + ++E+LI+ + + + ++ Sbjct: 163 SVFVTETNRRSDFCRAIIDKLVAFSFAEAFAQKYDFFAAVFEYLIKDYNKDFGK-YAEYY 221 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + +++ T+YDP G+G + + + + Sbjct: 222 TPHSIASIIAKIMVPDGA--------QNVTVYDPAAGSGTLVLALAHEIGEDN------- 266 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292 + Q++ +++ L L + N+ G TL + K +F Sbjct: 267 -CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGNVVHGDTLLQPEHLNKQKNGLMKF 320 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGS-----MLFLMHLANK 345 Y +SNPPF + ++D + E RF G+P +LFL H+ Sbjct: 321 DYIVSNPPFNMDFSDNRDTLAGE---KYKERFWAGVPNIPKKKKDSMDIYLLFLQHILFS 377 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G+A IV+ + L A + +IR ++ ++ ++++P+++F T Sbjct: 378 LKDT----GKAGIVVPTGFLTT--ATGIQKKIREKIISEKMLRGVISMPSNIFATTGTNV 431 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYV-SRENGK 463 + L +K + KV L++A+ + I+ +GK +R ++ D + QI+ + E Sbjct: 432 SIMFLDAQKQQ---DKVMLMDASSMGQKIKVDGKNQRTVLRDFEIEQIISTFNCEIETDD 488 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 FS M+ + + +F L ++ E D ++L + LD + Sbjct: 489 FSVMVSLDQISKNKFSLSAGQYFTFKLPYVEISEAEFDKEMQRL-QIELGDELDAGAELN 547 Query: 524 QQI 526 ++I Sbjct: 548 KEI 550 >gi|295426377|ref|ZP_06819030.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM 11664] gi|295063936|gb|EFG54891.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM 11664] Length = 537 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 87/477 (18%), Positives = 186/477 (38%), Gaps = 63/477 (13%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 + ++ V F + L + ++ + + +++ Sbjct: 29 EAGEYKLVTQSFL-YKFLNDKFLYEAKKYDSQNDYQHLMDLSDDDYEMTQLSLGTDSAVI 87 Query: 87 SLSTLGSTN-TRNNLESYIASFSDNAKAI-FEDFDF------SSTIARLEKAGLL----- 133 L T + N++ + F I ++ D +T RL A L+ Sbjct: 88 QRKDLIETIYNQQNVDDFSEVFDSALNDIALDNNDLFSVETAGNTQVRLFDAHLIADNIQ 147 Query: 134 ---------YKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++ K + + + S I+E++I+ + ++ TPR Sbjct: 148 DGSQRDHVARELIKLLASTKFDNSIFDEGFDFFSTIFEYMIQDYNKNGGGNYAEYYTPRT 207 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 + + +L ++ +YDP G+G L + N + Sbjct: 208 ISKIIADIL-------IGKAKPENVKVYDPAAGSGTLLMNVANRI--------GVDKCTV 252 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 + Q++ ++ + +L L + NI QG+T+ + ++ Y +SNPPF Sbjct: 253 YSQDISQKS-----SNLLRLNLILNNLSHSIHNIVQGNTILNNKHP-EKMDYIVSNPPFK 306 Query: 303 KKWEKDKDAVEK-EHKNGELGRFGPGLPKISDGSM----LFLMHLANKLELPPNGGGRAA 357 + +D VE + + P +P SM LF+ H+ + L G+A Sbjct: 307 LDFSDWRDQVESIPNSSEIYFAGIPKIPNKKKNSMAIYELFIQHIIHSLNDK----GKAG 362 Query: 358 IVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +V+ + L A SG + +IR++L++N +I+ +V++P+++F T + + K + Sbjct: 363 VVVPTGFL---TAQSGIDKKIRKFLVDNGMIDKVVSMPSNVFANTGTNVSVIFFNKVKQD 419 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 +VQLI+A+ L I+ G +R ++ + ++I+D V R++ FS + + Sbjct: 420 ---DQVQLIDASKLGKKIKENGLQRTALSVEDIKKIVDTAVERKDVDDFSITVSLKD 473 >gi|146319439|ref|YP_001199151.1| Type I restriction-modification system methyltransferase subunit [Streptococcus suis 05ZYH33] gi|145690245|gb|ABP90751.1| Type I restriction-modification system methyltransferase subunit [Streptococcus suis 05ZYH33] Length = 300 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 110/315 (34%), Gaps = 48/315 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52 + + ++ N IW A +L G+ +++ IL F R L +E Sbjct: 1 MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106 V++ Y N +E A + Y + + L + ++ ++ Sbjct: 61 ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120 Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153 F+ N + +F D + + + + +A L I K IE D D Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVVRAKSLNSIVKLIDSIEYKNDEGKDI 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + IYE+LI +F + + +F TP V + ++ + ++YDPT Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILDKIVTLGLE-----KSDTSFSVYDPT 234 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L N + + +GQE+ T+ + +++ ++ + Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYSNMILNN 287 Query: 274 KNIQQGSTLSKDLFT 288 TL D Sbjct: 288 A-----DTLESDWPE 297 >gi|254426343|ref|ZP_05040059.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335] gi|196187757|gb|EDX82723.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335] Length = 494 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 80/436 (18%), Positives = 150/436 (34%), Gaps = 59/436 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ LE T+ + K G S + S R Sbjct: 35 LLFIKRLDD-LEVTKES---KARRLGRSVEQPTFAEDEQECRWSYFKNLDDSDKKLEIVR 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + +I A + + A LL + I + + Sbjct: 91 DQAFPFIKQLGGEAADSPYARHMQDAVFLISSAALLDSVVTQIDQIPME----DRDTKGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+++ + + F TPR ++ L AL+ +PG + DP CGTG Sbjct: 147 LYEYMLSKLSTAG--TNGQFRTPRHIIKLMVALM----------APGPNEIICDPACGTG 194 Query: 218 GFLTDAMNHVADCGSHHK-----------IPPILVPHGQELEPETHAVCVAGMLIRRLES 266 GFL A +V D + HG + + + +++ +E Sbjct: 195 GFLIGAAEYVRDLKDGEGNDVLNAPGNLAHFNDGMFHGFDFDATMLRIGSMNLMLHGIE- 253 Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 I+ +LS+D + F L+NPPF EK A + Sbjct: 254 ------QPAIEARDSLSEDHAGVEEAFTMILANPPFKGSVEKSTIAKDL----------- 296 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 +LF+ L+ GGRAA+++ LF + +R+ L+E Sbjct: 297 AKAISTKKTELLFMALFLRLLKK----GGRAAVIVPDGVLF--GSSKAHKGLRKLLVEAH 350 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 ++ ++++P+ +F ++T + + + E + D+ + KR+ I Sbjct: 351 KLDGVISMPSGVFKPYAGVSTAILMFTKVGVESGGSD--FVWFYDMAADGLSLDDKRQPI 408 Query: 445 NDDQRRQILDIYVSRE 460 ++ IL + SR+ Sbjct: 409 EENDIPDILARWQSRD 424 >gi|226947934|ref|YP_002803025.1| type I restriction modification system M subunit [Clostridium botulinum A2 str. Kyoto] gi|226843533|gb|ACO86199.1| type I restriction modification system M subunit [Clostridium botulinum A2 str. Kyoto] Length = 494 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 78/499 (15%), Positives = 181/499 (36%), Gaps = 71/499 (14%) Query: 38 FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 F ++ L+ L + + + + F G + +++ + F N + + S Sbjct: 35 FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDKQYLRWSK--FKNEEAGEMYRIVSQE 90 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 ++ D F ++ +L KI +E+ Sbjct: 91 VFPFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNLEI----QDKDTK 141 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++YE+L+ + + F TPR ++ + L+ P + DP G Sbjct: 142 GDLYEYLLSKVATAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMG 189 Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 T GFL A ++ + + + +G +++ + M++ ++ Sbjct: 190 TAGFLVGAEEYLREKHNDLFLVQGLKDHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + NI+ +LS+ +++ L+NPPF + + + + + Sbjct: 247 ----NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADI-----------LKV 291 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K +LFL L+ GGR A ++ LF + G +IRR +++N+ +E Sbjct: 292 SKTKKTELLFLALFLRILKK----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLE 345 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 AI+++P+ +F ++T + I + KV + + KR I D+ Sbjct: 346 AIISMPSGVFKPYAGVSTAIIIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDN 401 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 +++ + + + + + + F + V ++ L +E + ++ Sbjct: 402 DIPDMIERFNNLDKEEDRKRTEQSFF----VPVDEIRENNYDLSINKYKEIEYE----EV 453 Query: 508 SPLHQSFWLDILKPMMQQI 526 L+ +K + ++I Sbjct: 454 VYDEPKVILERVKKLEEEI 472 >gi|298375501|ref|ZP_06985458.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19] gi|298268001|gb|EFI09657.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19] Length = 558 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 84/491 (17%), Positives = 181/491 (36%), Gaps = 80/491 (16%) Query: 29 TDFGKVILPFTLLRRLECAL--EPTRSAVR-EKYLAFGGSNIDLESFVKVAGYSFYNTSE 85 +++ ++ L + E R + E+ + + ++F + ++ Sbjct: 31 SEYK-IVTEMFLYKFFNDKFGYEAKRDKMYGERLSKAEKWDAEYDTFTEEEVEDLFSYLP 89 Query: 86 YSLSTLGSTNTRNNLESY--------------IASFSDNAK------------AIFEDFD 119 S+ L +T ++L ++ I + NA IF Sbjct: 90 ASVPRLKPEHTLSHLYNFTGKGDFSTLLDATLIDIANINADTFSVTTSGKSKVNIFSAIT 149 Query: 120 --FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + R E A L + +F+ + + S I+EHL++ F + ++ Sbjct: 150 TFVTDQQKRDEFAKSLMRNVASFNFEHVFIEKYDF--FSRIFEHLLKGFNNAGGGKYAEY 207 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR + + LL+ + L T YDP+ GTG L + + + Sbjct: 208 YTPRAIAQVMARLLVGDNADL------RGVTCYDPSAGTGTLLMALAHQIGE-------- 253 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRF 292 + Q++ ++ + +++ + N+ QG+TL++ T K+F Sbjct: 254 DRCSIYSQDISEKSSEMLRLNLIL-----NSLSASLPNVVQGNTLTEPSHTELSGALKKF 308 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----------SMLFLMHL 342 + +SNPPF + + +D + + RF G+P + FL H+ Sbjct: 309 DFIVSNPPFKLDFPEYRDTLAA-----DTIRFWAGVPNKVKKINPEKPQMGIYLCFLQHV 363 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 N L+ A +V + R I + +++ ++ +++PT++F T Sbjct: 364 INSLKDTGKS---AVVVPTGFITSKKRNNVVAYNILQKIVDEHIVCGCISMPTNVFATTG 420 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + KV LI+A+ L + ++R + D++ I++ + ++E Sbjct: 421 TNVSVIFFDK---SATADKVILIDASKLGEEYKEGNNQKRRLLDNEIDLIVNTFRNKEVV 477 Query: 463 K-FSRMLDYRT 472 + FS + Y Sbjct: 478 EDFSVAVSYDE 488 >gi|188585422|ref|YP_001916967.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350109|gb|ACB84379.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 621 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 93/472 (19%), Positives = 167/472 (35%), Gaps = 102/472 (21%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 I++ E L G+ + ++ VI P ++ + Sbjct: 5 HIFQLCEHLRGELQPEEYLDVIFPVLTIKHIS---------------------------- 36 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133 +Y + + + L ++ NL + A + E L Sbjct: 37 -ETKSPYYIPEDATWNCLIASGL--NLVKRVEK----AIELIE-----------GNNYRL 78 Query: 134 YKICKNFSGIELHPDTVPDRVMS--------NIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + F G L + + ++ + +I F + + + + T + Sbjct: 79 NNVLNIFPGKSLSDVNLYNFMLGIDEIQDHKQFLKTVIDHFSKRIGKASGVWHTSNTLNE 138 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L L+ D + YD T G L +A G L +GQ Sbjct: 139 LIVRLIAPMDG-----------SFYDGTAGLCNTLIEASEFAEQEGGA------LQLYGQ 181 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPF 301 E++P+ A+ ++ +++ +L + T K F Y N PF Sbjct: 182 EIDPKIWALGKINLI-------FNECHDVVLEREDSLRNPMTTEDNNLKTFDYIGMNIPF 234 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G +D +E + GRF G+P G M F++H L G+AAIV+ Sbjct: 235 GL-----RDWGVEEARRDLFGRFRYGIPSKQHGDMAFILHALTSLNRS----GKAAIVVP 285 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 LF G E++IR L+ ND+IE +V LP+ L TNI + IL+ K EE K Sbjct: 286 HGVLFRGGR---EAKIREKLINNDVIEGVVDLPSGLLAGTNIPVSIIILNKLKPEESTEK 342 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 + ++NA ++ K + + I++ Y+ ++ FS ++ Sbjct: 343 IFMVNA-------KDIEHKGFELPREDLDMIIEAYIRKDTIDGFSMWINRED 387 >gi|329955592|ref|ZP_08296500.1| putative type I restriction-modification system, M subunit [Bacteroides clarus YIT 12056] gi|328525995|gb|EGF53019.1| putative type I restriction-modification system, M subunit [Bacteroides clarus YIT 12056] Length = 560 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 81/491 (16%), Positives = 179/491 (36%), Gaps = 83/491 (16%) Query: 29 TDFGKVILPFTLLRRLECAL--EPTRS-AVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85 +++ ++ L + E R E+ + + ++F + ++ Sbjct: 31 SEYK-IVTEMFLYKFFNDKFGYEAKRDPMYGERLSKAEKWDAEYDTFTEEEVEDLFSYLP 89 Query: 86 YSLSTLGSTNTRNNL------ESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKI- 136 +S+ L +T ++L + I FS T + K + + + Sbjct: 90 HSVPRLKPEHTLSHLYNSATKGDFSTLLDATLVDIASLNAETFSVTTSGKSKVNIFFPLT 149 Query: 137 -------------------CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 +F+ ++ + S I+EHL++ F + ++ Sbjct: 150 TYVTDTQKRDEFAKSLMRNVASFNFEDVFDEKYDF--FSRIFEHLLKGFNNAGGGKYAEY 207 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR + + LL+ + L T YDP+ GTG L + + + Sbjct: 208 YTPRAIAQVMARLLVGENTDL------RGVTCYDPSAGTGTLLMALAHQIGE-------- 253 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRF 292 Q++ ++ + +++ + N+ QG+TL++ ++F Sbjct: 254 ERCTIFSQDISEKSSEMLRLNLIL-----NNFAASLPNVVQGNTLTEPSHKESNGVLRKF 308 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP----------KISDGSMLFLMHL 342 + +SNPPF + + +D + + RF G+P F+ H+ Sbjct: 309 DFIVSNPPFKLDFPEYRDTLAS-----DTIRFWAGVPNAVKKVDPMKPKMAIYTCFIQHV 363 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 N L+ G+AAIV+ + F E I + +++ + ++++P+++F T Sbjct: 364 LNSLKTT----GKAAIVIPTG--FITAKSGVEKRILQRIVDERWVYGVISMPSNVFATTG 417 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461 + KV LI+A+ L + ++R + D + QI++ + ++E Sbjct: 418 TNVSVIFFDK---SANHDKVILIDASKLGEEYKEGNNQKRRLRDFEIDQIVNTFQNKEAV 474 Query: 462 GKFSRMLDYRT 472 FS + Y Sbjct: 475 DDFSVAVTYDE 485 >gi|167851733|ref|ZP_02477241.1| N-6 DNA methylase [Burkholderia pseudomallei B7210] Length = 489 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 94/503 (18%), Positives = 163/503 (32%), Gaps = 71/503 (14%) Query: 38 FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ + LE R L + D E +F N + +L Sbjct: 34 LFFLKIFDDQETELELMHDGFRSPLPDRLRWRNWAADPEGITGDELLTFINDDLFPTLKD 93 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L + R NA+ F ++ LL ++ + ++ Sbjct: 94 LDADQQR------------NARGFVVREVFGDAYNYMKSGQLLRQVVNRINEVDF-NSQS 140 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +++YE +++ S + A +F TPR V + +P + + Sbjct: 141 ERHQFNDLYEKILKDLQSAGN--AGEFYTPRAVTQFMVDQV----------NPRLGERVL 188 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDP 268 DP CGTGGFL A+ H+ H + G E + H +CV ML+ ++ Sbjct: 189 DPACGTGGFLACAIEHLKAQRKHVEDDAVLQNSIFGVEKKQLPHLLCVTNMLLHGIQVPS 248 Query: 269 RRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 I+ +TLS+ D L+NPPFG E G F Sbjct: 249 L------IRHDNTLSRPLVDYSNRDMMDVILTNPPFGGTEEP-----------GIENNFP 291 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + + + + LFL+ + L+ GRAA+VL LF S I+ LL Sbjct: 292 ADV-RTRETADLFLVLIIELLKP----NGRAAVVLPDGTLFGEGVKS---RIKERLLAEC 343 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + IV LP +F T I T L + + + + + + Sbjct: 344 NLHTIVRLPNGVFAPYTGIKTNLLFFTKGTPTRDIWYYEHPYPAGYKSYSKTKPIRIEEF 403 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 + + E F+ ++ F ++ V + LD+ R E + Sbjct: 404 VPE------KAWWGCEEDGFASRVES-EFA-WKVSVDALKASGYNLDQKNPHRAEEESHD 455 Query: 505 RKLSPLHQSFWLDILKPMMQQIY 527 + + Q+ Sbjct: 456 PDELLAQYRRLTTEAQVLRDQLK 478 >gi|240047533|ref|YP_002960921.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae HRC/581] gi|239985105|emb|CAT05098.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae] Length = 546 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 93/555 (16%), Positives = 200/555 (36%), Gaps = 80/555 (14%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 ++ VI L + + V + + + + S N + Sbjct: 26 DGNEYK-VITQVFLYKFINDKFGYEIKKVSPELNVADKWDESYANMSEEKRKSLLNRLKA 84 Query: 87 SLSTLGSTNTRNNL------ESYIASFSDNAKAI--------------------FED--F 118 + L + + L ++ F + I FE Sbjct: 85 DVPLLEPQHLISGLWNQQKKGNFAQIFDSTMEEIAAKNEAIFATETVHKTRIPIFEKLTI 144 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + I R + A L NFS E + +++E+L++ + + ++ Sbjct: 145 YVTDDIKRSDFARALVDKLVNFSFEEALGEHYDFFA--DMFEYLLKDYNTNGGGKYAEYY 202 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP+ + + LL+ +YDP+ GTG + + + Sbjct: 203 TPQSIAKIMAKLLIGEQKEFNSIE------IYDPSAGTGTLVMALSHSI--------GID 248 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRF 292 + Q++ +++ + +++ L +N QG TL S D + ++F Sbjct: 249 RCTIYTQDISQKSNKMLKFNLILNGL-----VSSLQNAIQGDTLTSPYHRSDDNKSLRQF 303 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM----LFLMHLANK 345 + +SNPPF + + +E + RF G+P SM LF+ H+ N Sbjct: 304 DFVVSNPPFKLDFSE-----TREKLSTMPERFWGGVPKVPPTKKDSMAIYTLFIQHVINS 358 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ N G+ AIV+ + F ES+I + +++ ++ V++P+++F T Sbjct: 359 LK---NETGKGAIVIPTG--FITSKSGVESKILKRIVDEKIVYGCVSMPSNVFANTGTNV 413 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464 + N KV LI+A+ L ++ K+R + + I++ + ++E+ F Sbjct: 414 TVLFFDN---ARNHDKVILIDASKLGEDYKDGKNKKRRLTEKDIDLIINTFNNKESIADF 470 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKP 521 S + Y + + +D + + E + K Q ++ + + K Sbjct: 471 SIAVSYDDIKEKNYSLSAGQYFDIKIDYVEITQEEFEAKMNKYQSELQKYFEEGDKLQKE 530 Query: 522 MMQQIYPYGWAESFV 536 +M+Q+ ++ + Sbjct: 531 IMEQLQNLKLSKKNI 545 >gi|237744713|ref|ZP_04575194.1| type I restriction modification system M subunit [Fusobacterium sp. 7_1] gi|229431942|gb|EEO42154.1| type I restriction modification system M subunit [Fusobacterium sp. 7_1] Length = 498 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 86/505 (17%), Positives = 190/505 (37%), Gaps = 60/505 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95 ++RL+ + + +EK LA NID + ++ L Sbjct: 35 LIFMKRLD---QEEQRKEKEKKLASIFGNIDEKFIFDEKHQDIRWSNLIQLGDPKQLYDK 91 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154 RN +I + D+ +++F + + I ++ +L I +P V D Sbjct: 92 IRNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++YE+L+ + + F TP+ ++++ L+ P + + DP C Sbjct: 151 KGDLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVQDKIIDPAC 198 Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 GT GFL ++ ++ K + HG + + + +L+ ++ Sbjct: 199 GTSGFLVSSIEYIKRNFRDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + +++ +LS D + L+NPPF K ++++ + L R Sbjct: 258 ------TPKLKRIDSLSTDFNEENDYTLVLANPPF-------KGSIDESLLSNTLTR--- 301 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + K +LF+ L+ GGR A+++ LF A + +R+ L+EN+ Sbjct: 302 -VVKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQ 354 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 +EA++++P+ +F ++T + I + V + T + KR I Sbjct: 355 LEAVISMPSGVFRPYAGVSTGILIFTKT-GNGGTDNVWFYDMTADGY---SLDDKRNPIE 410 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 ++ I++ + + EN K + D F + + + L + + Sbjct: 411 ENDIPDIIERFSNLENEKGRKRTDKSFF----VPKQEIVDNDYDLSINKYKEIVYEKVEY 466 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYG 530 + + ++ K + +++ Sbjct: 467 EEPEVILQKLEELSKSIDEKLKELK 491 >gi|262280000|ref|ZP_06057785.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202] gi|262260351|gb|EEY79084.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202] Length = 491 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 97/515 (18%), Positives = 189/515 (36%), Gaps = 90/515 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTN 95 L+ ++ +L + + G +F ++ + + Sbjct: 33 MLFLKVVDD------------------RENELATLALLEGQTFKSPIPEKFRWRNWAAND 74 Query: 96 ---TRNNLESYI-ASFSDNAKAI-FEDFD---------FSSTIARLEKAGLLYKICKNFS 141 T + L+ +I + + E+ D FS ++ GL+ KI Sbjct: 75 EGMTGDELKDFIDNELFPALQNLAVENDDPRARVVQNVFSDAYNYMKSGGLIRKIINQIQ 134 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + +IYE L+R + ++ + +F TPR V ++ Sbjct: 135 KGFDFNKSKERHAFGDIYEQLLRDL--QAAKNSGEFYTPRAVTTFMAQIV---------- 182 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAG 258 P + ++ DP CGTGGFLT A+ H + + + +G E +P H +C Sbjct: 183 DPQLGESVLDPACGTGGFLTSAIEHKRENYVQTAEDEKILQNSIYGIEKKPLPHLLCTTN 242 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ ++ I++ +TLS T KR L+NPPFG ++ +EK Sbjct: 243 MILHGIDV------PVQIRRDNTLSYPLISWGTDKRVDVVLTNPPFGG---TEEQGIEKN 293 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + R + + LF++ + L+ GRAA+VL +F ++ Sbjct: 294 FPSKFQTR---------ETADLFMVLIIQLLKAH----GRAAVVLPDGFMF---GEGIKT 337 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV--QLINATDLWT 432 I+ L+E+ + IV LP +F T+I+T + + K E QL + Sbjct: 338 AIKEKLMEDCNLHTIVRLPKSVFAPYTSISTNILFFTKGKKTEHVWFYEHQLPQGVKAY- 396 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 K + + + + + +G SR+ + + ++ + + ++ LD Sbjct: 397 ------NKTKPLQLKEFDTLKSWWGKESDGFASRIENQQA---WKVSLQDIIDRNYNLDI 447 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 ++E DI K + + QQ+ Sbjct: 448 KNPHQVEEDIKDPKELLAKYESLEAEVAKIRQQLK 482 >gi|254457532|ref|ZP_05070960.1| type I restriction-modification system, M subunit [Campylobacterales bacterium GD 1] gi|207086324|gb|EDZ63608.1| type I restriction-modification system, M subunit [Campylobacterales bacterium GD 1] Length = 484 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 90/507 (17%), Positives = 174/507 (34%), Gaps = 77/507 (15%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ LE + E I E +S + T + L Sbjct: 33 LFLKYLDD-LEKDKKTAAELTGKTYTDIIAPEY-----QWSVWATPKDKDGKLDHHKALS 86 Query: 94 -----TNTRNNLESYIASFSDNAK--AIFE-DFD--FSSTIARLEKAGLLYKICKNFSGI 143 + L Y+ F +A+ E FS R++ L ++ + Sbjct: 87 GDDLKDFVDHKLFPYLKKFKADAESADTIEYKIGEIFSELKNRIQSGYNLREVINRIDEL 146 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 MS++YE I+ G ++ TPR ++ ++ +P Sbjct: 147 RFRTHA-EKHEMSHLYEDKIKNMG-NAGRNGGEYYTPRALIKTIVKVV----------AP 194 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGM 259 + +YD G+ GFL +A ++ + +I +G+E + + + M Sbjct: 195 QIGDKIYDGAVGSAGFLVEAFEYLKHSKNLTTADTEILQKKTFYGKEKKSLAYIIGTMNM 254 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 ++ +E + NI +TL++ D+ R+ L+NPPFG K + Sbjct: 255 ILHGVE-------APNIIHTNTLAENLADIQDKDRYDVILANPPFGGKERAEVQQNFPI- 306 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 K + + LF+ H L+ GG+A IV+ ++ L N S Sbjct: 307 -------------KTGETASLFIQHFVKILK----AGGKAGIVIKNTFLSNTDNAS--VS 347 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 +R+ LLEN + ++ LP F + T + QL RN Sbjct: 348 LRKLLLENCNLHTVLDLPGGTFTGAGVKTVVLFFEKGVPTRNVWFYQL-------NLDRN 400 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 G K +N+ + +++ + G+ S +D + + + ++ L Sbjct: 401 LG-KTNPLNEKDLAEFVELQKTFATGENSWSVDVASI--DQNTYDLSAKNPNKKEEAALR 457 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMM 523 + + + K + L + M+ Sbjct: 458 KPQEILEEMKALDEESAEILASILEML 484 >gi|32266922|ref|NP_860954.1| type I restriction-modification system [Helicobacter hepaticus ATCC 51449] gi|32262974|gb|AAP78020.1| type I restriction-modification system [Helicobacter hepaticus ATCC 51449] Length = 475 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 102/529 (19%), Positives = 192/529 (36%), Gaps = 70/529 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 S ++ +W A L + + + L L+ E R ++ E + Sbjct: 2 SEKAIVAKVWNFATILRDSGVS--YTEYVAQLSYLLFLKM-----ESERESIGE--HSKI 52 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 ++ E + + G + +L+ L + S+ + ++ Sbjct: 53 PTSCKWERLINLDGLELESAYNAALAQL--------------AKSEGVIGLV----YNDA 94 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++++ L K+ + V IYE L+ + +E GA + TPR + Sbjct: 95 QNKIKEPANLKKLFVLMDSETWL--GLNVDVKGAIYEGLLAKNATETKAGAGQYFTPRVL 152 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPIL 240 + L+ + DP CGTGGFL A + K Sbjct: 153 IDSIVGLM----------ELKPNMEVCDPACGTGGFLLSAYEAMKAQTKDKEEIKCLRNE 202 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 G+++ P ++C + + + + +LS+ +RF L+NPP Sbjct: 203 RLCGKDITPLVASLCAMNLYLHGIGGEGGIIEIG-----DSLSE--LGNRRFDRVLTNPP 255 Query: 301 FGKKWEKDKDAVEKEHK--NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 FGKK A + K E R S+ + FL H+ N L+ GG+AA+ Sbjct: 256 FGKKSATKILAENGKVKSQKDEYNREDFFAT-TSNKQLNFLQHIMNLLK----IGGKAAV 310 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEE 417 VL + LF AG ++R+ LLE+ + I+ LPT +F+ + + +E+ Sbjct: 311 VLPDNVLFEAGAG---EKVRKKLLEDFNLHTILRLPTGIFYAQGVKANVLFFDKVATSED 367 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRMLDYRTFGY 475 KV + + + N ++ + R+ + + EN K S + G Sbjct: 368 STQKVWVYD----MRTNMNLSLVTSPLSAEHLREFESCFCVGAMENRKESERFRSFSIGE 423 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + L + ++ D L LE + + LS + L+ + Q Sbjct: 424 IKKRDKMNLDIFWLKD-ESLEDLENLPSPKDLSEQICISLKNALREIEQ 471 >gi|126463982|ref|YP_001045095.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029] gi|126105793|gb|ABN78323.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029] Length = 481 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 107/508 (21%), Positives = 173/508 (34%), Gaps = 87/508 (17%) Query: 38 FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ ++ ALE TR + + D E SF N S + L Sbjct: 33 MFFLKIIDDQDEALELTRDEYISPIPADMQWRAWAADPEGMTGDELLSFVNESLFPRLKN 92 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L T R + + +FED ++F ++ LL ++ +G++ + Sbjct: 93 LRPTAPRARV----------IRDVFEDAYNF------MKSGQLLRQVINKINGVDF-NNL 135 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +IYE L+ + + A ++ TPR V + P L Sbjct: 136 TERQHFGDIYEQLLNDL--QNAGNAGEYYTPRAVTAFMVQQI----------DPRPGEIL 183 Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP CGTGGFLT AM H+ D H+ E +P H +CV ML+ +E Sbjct: 184 MDPACGTGGFLTCAMRHMRDRHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVEE 243 Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++ +TL++ +R L+NPPFG K ++G Sbjct: 244 PHF------VRHDNTLARPLTSWTRDERVDIVLTNPPFGGKE-----------EDGIENN 286 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F + + + LFL + L+ GGRAA+VL LF ++ ++ L+ Sbjct: 287 FP--TFRTRETADLFLALIIRLLKP----GGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + IV LP +F +I T L T W EG+K Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPTTE---------TWFWEHRVPEGQKAY 388 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD-------KTGL 495 + R L G SR ++ + LD L Sbjct: 389 SMTKPIRLDHLAGCADWW-GGASREGRVEGPQAWKVSAEEIKARGYNLDIKNPHAEAEDL 447 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMM 523 E + + + LK ++ Sbjct: 448 GDPEHLLAALDEAEAEVARLRAALKAIL 475 >gi|313207213|ref|YP_004046390.1| n-6 DNA methylase [Riemerella anatipestifer DSM 15868] gi|312446529|gb|ADQ82884.1| N-6 DNA methylase [Riemerella anatipestifer DSM 15868] gi|315022985|gb|EFT36006.1| type I restriction enzyme M protein [Riemerella anatipestifer RA-YM] gi|325335341|gb|ADZ11615.1| Type I restriction-modification system methyltransferase subunit [Riemerella anatipestifer RA-GD] Length = 515 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 85/539 (15%), Positives = 175/539 (32%), Gaps = 84/539 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L++L+ + E+ G++ + + N +S Sbjct: 35 LIFLKQLDD-----KQTTIEEEKTLFGASNHKDIYASEQ-----NELRWSFFKDKDPEVM 84 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIAR---------------LEKAGLLYKICKNFSG 142 ++ + DN FDF T+ + LL ++ + Sbjct: 85 FDIFTKPNPEIDN----LTAFDFMKTLGAVGGKFSEYMKGATFMIPTPNLLDRVVQQIDK 140 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + L+ ++YE+++ + F TPR ++ + L+ Sbjct: 141 LPLN----RRDTKGDLYEYMLSKIAEAG--TNGQFRTPRHIIRMMVELM----------Q 184 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVC 255 P T+ DP GT GFL ++ + + + HG E++P + Sbjct: 185 PQQEDTVCDPAMGTAGFLVATGEYLHERHQDWFLDKTFRRHFSEDMFHGIEIDPSMMRIA 244 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 + + +E S NI GS L++ ++ L+NPPF D+ Sbjct: 245 SMNLQLHGIE-------SPNITGGSALAESNTITGKYSLILANPPFKGALNYDEVESSL- 296 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + K +LFL + L+ GGRAA+++ LF + Sbjct: 297 ----------LQVTKTKKTELLFLSLILRMLK----LGGRAAVIVPDGVLF--GNSTAHK 340 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTS 433 IR+ L+EN ++ ++++P+ +F ++T + + + T KV + TD ++ Sbjct: 341 NIRKELIENHQLQGVISMPSGVFKPYAGVSTAILLFTKTNTG-GTEKVWFYDMTTDGYSL 399 Query: 434 IRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 K + I + ++ R + SF++ K Sbjct: 400 DDKRTAKITNEQLEACFDTPEQIQSEVAEHCDIPRILTDWRNIDKVGTDR-TQKSFLVAK 458 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 + + D++ + + + I I ++ K L K Sbjct: 459 ADIVANDYDLSINRYKEI---VYETIAYETPSAIITQIKDLQTQRQQAMEALEKMLNAK 514 >gi|297570526|ref|YP_003691870.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfurivibrio alkaliphilus AHT2] gi|296926441|gb|ADH87251.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfurivibrio alkaliphilus AHT2] Length = 498 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 91/539 (16%), Positives = 170/539 (31%), Gaps = 81/539 (15%) Query: 10 SLANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLEC------ALEPTRSAVREK 58 +++ I + + D G+ L L+ + + + + Sbjct: 2 TISTTIKSIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDDREVEWELFDDHYRSPIPE 59 Query: 59 YLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 L + D E F NT L L D+ + + Sbjct: 60 PLRWRNWAADPEGITGEELKDFIDNTLFPGLQNLQPRG-------------DDYRGVVIR 106 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F ++ LL ++ + +YE +++ S + A +F Sbjct: 107 SVFEDAYNYMKSGQLLRQVINKLQEGVNFNKAGERHELGGVYEQILKDLQSAGN--AGEF 164 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHH 234 TPR V + P + T+ DP CGTGGFLT A+ H + Sbjct: 165 YTPRAVTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKRNHYVQTPQD 214 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKR 291 + G E +P H + V +++ +E I+ + L++ +R Sbjct: 215 EAILQRSILGVEKKPLPHLLAVTNLILHGIE------NPDQIKHDNALARPLISWGPKER 268 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 ++NPPFG ++D +E R + +D LFL + L+ Sbjct: 269 VEVIVANPPFGG---MEEDGIETNFPQAFRTR------ETAD---LFLTLFIHLLKPR-- 314 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWI 409 GRAA+VL LF + ++ LL + IV LP +F + T I T L Sbjct: 315 --GRAAVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLF 368 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + E + K + + + + +D + +G +R Sbjct: 369 FTKGAPTEAVWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFAARRET 423 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 R ++ + ++ LD E + ++ + Q+ Sbjct: 424 ERA---WKVPAEQIKARNYNLDIKNPYAAEQQNHDPEQLLARYHQQQSEIQQLRDQLKE 479 >gi|260438000|ref|ZP_05791816.1| type I restriction-modification system, M subunit [Butyrivibrio crossotus DSM 2876] gi|292809479|gb|EFF68684.1| type I restriction-modification system, M subunit [Butyrivibrio crossotus DSM 2876] Length = 475 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 79/467 (16%), Positives = 153/467 (32%), Gaps = 85/467 (18%) Query: 1 MTEFT-GSAASLANFIWKNAEDLWGDFKHTD--FGKVILPFT---LLRRLECALEPTRSA 54 MTE + ++L + A F I T L+ + + Sbjct: 1 MTENQIKTESALIKKVGDIANV----MAAAGVGFTDYITQLTYILFLKM-----DEEKEE 51 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA- 113 + G Y L + N + +E Y + AK Sbjct: 52 M---------------------GLESTIPDGYKWKDLVNLNGTDLIEKYEEILRELAKEE 90 Query: 114 -IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + F+ +++ L KI + + + + IYE ++ + G + Sbjct: 91 GLIGTI-FTKAANKIDSPVKLAKIIEMVKSENWYM--MEGDLKGAIYESILEKNGQDKKS 147 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 GA + TPR ++ + P + T+ DP CGT GFL A H+ Sbjct: 148 GAGQYFTPRALIQAMVDV----------TDPQITETVADPACGTAGFLLAAYEHMKKQAK 197 Query: 233 HHK---IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + G + P + + + + + I +L + Sbjct: 198 NSNQLTNLKNNALFGADNTPLVVTLASMNLYLHDI-----GTHTSPIVCQDSLLD--TSD 250 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 K + L+NPPFG + + + K SD + FL H+ + ++ Sbjct: 251 KMYDVILANPPFGTRPQGSGEVSAVRSDFI----------KTSDNQVNFLQHIMSIVKT- 299 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GGR A+VL + L +G A +++R LL++ + I+ LPT +F+ + T + Sbjct: 300 ---GGRVAVVLPDNVLTDGNAT---AKVREKLLKDFNLHTILRLPTGIFYANGVKTNVLF 353 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 E + + + + ++ + + + Y Sbjct: 354 FEKGSPTE---DIWVYD----YRIGIKHTLVQKPLTREHLDDFVSCY 393 >gi|197334342|ref|YP_002156837.1| type I restriction-modification system, M subunit [Vibrio fischeri MJ11] gi|197315832|gb|ACH65279.1| type I restriction-modification system, M subunit [Vibrio fischeri MJ11] Length = 485 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 86/473 (18%), Positives = 164/473 (34%), Gaps = 82/473 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ L+ LE +R+ E G ID + T E L + Sbjct: 32 MLFLKYLDD-LEHSRALEAEMLGEQYGYIIDRDFRWSTWAAPKKATGELDDDALTGEDLM 90 Query: 98 N----NLESYIASF-----SDN-----AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 L Y+ F S N IF + +++ L + + Sbjct: 91 EFVDGELFPYLKGFKQRAESPNTIEYKIGEIFGEIK-----NKIQSGYSLRDALEKVDNL 145 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 +S++YE I+ G ++ TPR ++ ++ P Sbjct: 146 RFR-SQEEKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIDVI----------QP 193 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------PILVPHGQELEPETHAVC 255 + +T+YD G+ GFL +A +++ G+ K + +E + + + Sbjct: 194 KIGQTIYDGAAGSAGFLCEAFDYLRKGGAEKKKLTTAELDTLQKRTFYAKEKKSLAYVIA 253 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M++ +E + N+ +TL++ DL +R+ L+NPPFG K K+ Sbjct: 254 IMNMILHGIE-------APNVVHTNTLAENIKDLQDSQRYDIVLANPPFGGKERKEVQMN 306 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 K + + LFL H L GG+AAIV+ ++ L N A Sbjct: 307 FPI--------------KTGETAFLFLQHFIKTLRP----GGQAAIVIKNTFLSNSDAT- 347 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 +R+ LL+ + ++ P F + T + + + + +L Sbjct: 348 ---AVRKELLQTCNLHTVLDCPAKTFLGAGVKTVVLFFTKGEPTTKTWFYEL-------D 397 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRP 483 R+ G K +ND + + + ++ + S + + V P Sbjct: 398 PGRSLG-KTNPLNDKDLAEFVTLQKTKADSDKSWSVTTSELDQTTWDLSVKNP 449 >gi|118466595|ref|YP_884147.1| type I restriction-modification system, M subunit [Mycobacterium avium 104] gi|118167882|gb|ABK68779.1| type I restriction-modification system, M subunit [Mycobacterium avium 104] Length = 495 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 84/484 (17%), Positives = 166/484 (34%), Gaps = 72/484 (14%) Query: 5 TGSAASLANFIWKNAEDLW------GDFKHTDFGKVILP----FTLLRRLECALEPTRSA 54 T A LA I + + GD +P L+ + LE R Sbjct: 13 TSPQAKLAAVIKSARDYMRKDAGLNGDLDR-------IPQLAWLLFLKAFDG-LEENREI 64 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 E + + + + +L T + L + S + + + Sbjct: 65 TEENFRPAIEAPYRWRDWAADPNGR----TGDALLTFVNNELLPYLRGLSGTGSHDPRDV 120 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F T R+ LL + + I + M+++YE ++R + Sbjct: 121 LAAV-FKETYNRMLSGYLLRDVVNKVNEINFA-SSDDIHTMAHLYESMLREMRDAAG-DS 177 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGS 232 +F TPR ++ + P + + DP CGTGGFL +A+ H+ + Sbjct: 178 GEFYTPRPIIRFIVQQV----------DPRLGEVILDPACGTGGFLVEALEHLSPKVTTT 227 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TG 289 G E +P + + +++ + NI +G+ L++ + Sbjct: 228 AQLRALHENLRGIEKKPLPFLLGMMNLVLHGV-------GQPNITRGNALAESITQISKA 280 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +R L+NPPFG + ++ +++ + ++ + LFL + L+ Sbjct: 281 RRVDVILTNPPFGGE---EEKSIQANFPADKQ---------TAETAWLFLQLVIRMLKD- 327 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408 GGR IV+ + LF G G + I++ LL + IV LP F T+I + L Sbjct: 328 ---GGRCGIVVPNGLLFGGGVG---ARIKKQLLTECNLHTIVRLPDGAFAPYTDIPSNLL 381 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 + ++ R + K + + ++ + +R + + + Sbjct: 382 FFDKTGRTKEIWYYEISPPEG-----RKKYSKSKPMRFEEFADCQVWWSNRVENERAWRV 436 Query: 469 DYRT 472 Sbjct: 437 PIAD 440 >gi|313675493|ref|YP_004053489.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126] gi|312942191|gb|ADR21381.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126] Length = 524 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 88/577 (15%), Positives = 199/577 (34%), Gaps = 80/577 (13%) Query: 5 TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECA--LEPTRSAVR 56 TG S + IW+ A L + + LRR++ LE ++ + Sbjct: 3 TGELKSQVDKIWESFWTGGIANPL-TVIEQFTY------LLFLRRMDERQQLEERKANMI 55 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKA 113 + + + + + F N ++ L + T + ++ + Sbjct: 56 GEPIENPIYSDEHKELR---WSHFSNVDPNTMFDLFTKTTEKRPLTVFEHMKQIGASV-G 111 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 +F +F + LL + + I++ ++YE+++ + + Sbjct: 112 VFGEF-MKGATFMIPTPKLLDTVVQMIKKIQMD----DRDTKGDLYEYMLSKVA--SAGQ 164 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TPR ++ + ++ P T+ DP+CGT GFL A ++ D Sbjct: 165 NGQFRTPRHIIRMMVDMV----------EPNETDTICDPSCGTAGFLVAAGEYLHDMHPD 214 Query: 234 -------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + G E + + + + +E +P+ ++ +G++ K Sbjct: 215 WFNDKKFREHYNKEMFTGMEFDSTMLRIGAMNLQLHGIE-NPQLIGVDSLSEGNSNIK-- 271 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 ++F L+NPPF K D D V+ N + K +LFL + L Sbjct: 272 ---EKFSLVLANPPF--KGSLDYDGVDDALLN---------IVKTKKTELLFLALMLRTL 317 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405 + GGR A+++ LF + EIR+ ++E + ++A++++P+ +F ++T Sbjct: 318 KT----GGRCAVIIPDGVLF--GSSKAHKEIRKEIIEKNKLDAVISMPSGVFKPYAGVST 371 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII--NDDQRRQILDIYVSRENGK 463 + + V + + KR ++ ++ + + E Sbjct: 372 AILFFTKT-GTGGTDNVWFYDMKADGY---SLDDKRSLLVNTEEFEQCFTAPEKAVEKAS 427 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI---TWRKLSPLHQSFWLDILK 520 D R V P+R + + ++ ++ K Sbjct: 428 IRDKCDIADILLRWDTV-NPMRHEKEASPEKDRKRTDQSFLVPFEEIKANDWDLSINRYK 486 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557 + + Y + + + + + +T + K + Sbjct: 487 EIEYEEVEYDAPKDIIADIEQLDADRTKALNLLKEVL 523 >gi|218441052|ref|YP_002379381.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] gi|218173780|gb|ACK72513.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] Length = 503 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 99/545 (18%), Positives = 181/545 (33%), Gaps = 87/545 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHT--DFG---KVILPFTLLRRLEC---ALEPTRSAVRE 57 + L ++I + + + IL L+ L+ AV + Sbjct: 11 TTQQGLNSYIKNICDIMRRSNCAGALQYVPELSWIL---FLKILDDTEQREAEEAEAVGD 67 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK----- 112 ++ + G + + + Y+ D + Sbjct: 68 RFDDSIAEPYRWRDWAAPQGTQRLKLQMGEMGKFIP-FVNDEVIPYLKGLKDKPRATPRQ 126 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 I + + R++ L I I+ DT +S +YE L+ + G + + Sbjct: 127 KIISEVMSNVERVRIDSEANLLDILDKVHEIDYI-DTTHIFPISQVYEGLLLKMGEKNN- 184 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TPR++V ++ +P + +YDP CGTGGFL + ++ D Sbjct: 185 DGGQFFTPREIVRAMIKII----------NPKVGEKIYDPACGTGGFLAQSYEYIRDNLG 234 Query: 233 HH------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---- 282 + + +G+E E + + +A +++ ++ ++ G+TL Sbjct: 235 DDITPEQLEPLKLNTFYGREKENLIYPIALANLVLHGIDL-------PHLWHGNTLNGEV 287 Query: 283 -SKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 DLF F L+NPPFG K K A F K S +LFL Sbjct: 288 TYGDLFKDAPPLFDIILTNPPFGGKEHKTVQAQ-----------FDY---KTSATQVLFL 333 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 H+ L GGR IVL LF + +R LL + + I++LP F Sbjct: 334 QHVIKSLAP----GGRCGIVLDEGVLFRTN-EKAFVQTKRKLLNDCNLYCIISLPAGTFK 388 Query: 399 -FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + + S + E K+ + +D+ KR+ +N + ++ Sbjct: 389 AAGGGVKANILFFSKGEPTE---KIWYYDLSDI------SVTKRKPLNLSDFEEFFKLFP 439 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 SRE S + + E T ++L L +S + Sbjct: 440 SREESDKSWTITREE--------IEAKNFDLKAVNPNAQSFEDKSTPKELLDLIESKGKE 491 Query: 518 ILKPM 522 + + Sbjct: 492 VAGAL 496 >gi|238810195|dbj|BAH69985.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 560 Score = 170 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 98/606 (16%), Positives = 219/606 (36%), Gaps = 110/606 (18%) Query: 1 MTEFTGSAASLANFIWKNAEDLWG-------DFKHTDFGKVILPFTLL-RRLECALEPTR 52 MT FT ++ + I +DL G + ++++ L + L Sbjct: 10 MTNFTKLENNIKSII----DDLKGLCSTNGLSNTAGE--EIVVTSVFLYKFLNDKF---- 59 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNLESYIA----- 105 + N+ E +K + Y FY+ ++ + L YI Sbjct: 60 --ISNLKKFAKELNVPFEEIIKNSNYMDGFYDAYPQDVAFKYEDTI-DYLVGYINEDDFY 116 Query: 106 -SFSDNAKAIF-----EDFD--------------FSSTIARLEKAGLLYKICKNFSG--I 143 F D I E F+ S+ + ++ + + Sbjct: 117 QKFDDTLIRISDYKQNEAFNVDTAEGTKKPLFVRLSTFVEPSKRNNFTKNVFSYITRDRF 176 Query: 144 ELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + S I+E+LI + + ++ TP+ + +L+ Sbjct: 177 DFGEAFNNNYDFFSTIFEYLISDYNIASGK-YAEYFTPQTLSKAIGEILV-----KMSPI 230 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 I +YDP+ G+G + H+A+ K + Q++ ++ ML+ Sbjct: 231 EDKIYEIYDPSAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLN 286 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWEKDKDAVE 313 L+ + NI +G TL K +F + SNPPF + +D +E Sbjct: 287 GLK-----ESLDNIIEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIE 341 Query: 314 KEHKNGELGRFGPGLP--KISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 +N E RF G+P + +LF+ H+ L+ GG+AAIV+ + F Sbjct: 342 LMWQNTE--RFFAGIPKVPKTKKDSMAIYLLFIQHILYSLKE----GGKAAIVVPTG--F 393 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 E IR+++++ ++ ++++P+++F T + + G+V L++ Sbjct: 394 ITAQSGIEKTIRQYIIDRKWLKGVISMPSNIFANTGTNVSVLFIDK---TNTNGEVLLMD 450 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLR 485 A+ + + + ++ ++ D+ +I++ +V+ + F+ + + Sbjct: 451 ASKMGHKEKVKDLQKTVLTHDELNKIVNDFVNHKVEDDFTI----------SVTYDQIKE 500 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 ++ L ++ + + Q + ++ +++ + ++ + S Sbjct: 501 RNYSLSAGQYFEVKIE-----YVDITQEEFDKMIDDFNKELEQF-TKDTEEFQKEMSKTL 554 Query: 546 KTLKVK 551 K LK+K Sbjct: 555 KELKLK 560 >gi|291528113|emb|CBK93699.1| Type I restriction-modification system methyltransferase subunit [Eubacterium rectale M104/1] Length = 545 Score = 170 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 82/539 (15%), Positives = 198/539 (36%), Gaps = 86/539 (15%) Query: 28 HTDFGKVILPFTLL-RRLECAL--------EPTR--SAVREKYLAFGGSNIDLESFVKVA 76 +++ I+ L + L E + V + + ++ + Sbjct: 30 SSEYK--IITEIFLYKFLNDKFIYEVQQADEELKNSENVEQALNIMSEDDYEMLMMLLPP 87 Query: 77 -----------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------DNAKAIFEDFD 119 Y F + ++ + L + + + + FS D + +F+ Sbjct: 88 ATAKLKREHFISYLFNHKNDEKFNELFDSTLWDISNTNLDVFSVSTGSGDKIR-LFDQNL 146 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFM 178 + ++ + + I+E+LI+ + + + ++ Sbjct: 147 SQNVTESNRRSDFCKAMIDKLVTFSFAEAFSQKYDFFATIFEYLIKDYNKDFGK-YAEYY 205 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + +++ T+YDP G+G + + + + Sbjct: 206 TPHSIASIIARIMVPEGV--------QNVTVYDPAAGSGTLVLALAHEIGESN------- 250 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292 + Q++ +++ L L + ++ G TL + +F Sbjct: 251 -CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGLMKF 304 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANK 345 Y +SNPPF + ++D + + RF G+P + + + +FL H+ Sbjct: 305 DYIVSNPPFNVDFSDNRDTL---AGDIYKERFWAGVPNVPNKNKDSMAIYQMFLQHIIFS 361 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 ++ GGRAA+V+ + L G +IR ++E+ ++ +V++P+++F T Sbjct: 362 MK---ENGGRAAVVVPTGFLTAGTRI--PKKIRERIVEDRMLRGVVSMPSNIFATTGTNV 416 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRE-NGK 463 + L N K E+ L++A+ L T I+ +GK +R +++ ++ I+D + + E Sbjct: 417 SVLFLDNSKKYEQA---ILMDASKLGTKIKVDGKNQRTVLSPEEIENIIDTFNNFETKDD 473 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDILKP 521 FS ++D Y +I+ + + + + +E ++K + ++ Sbjct: 474 FSVVVD-----YDKIEQKKCSFSAGQYFEVKIEYVELTQEEFQKKMDGYTEKLTELFAE 527 >gi|94267247|ref|ZP_01290823.1| N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93452077|gb|EAT02763.1| N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 498 Score = 170 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 88/534 (16%), Positives = 167/534 (31%), Gaps = 73/534 (13%) Query: 11 LANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ I + + D G+ L L+ + R E + S Sbjct: 3 ISTTIKAIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDD-----REVEWEMFDDAYRS 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122 I + + L N L + + + + + F Sbjct: 56 PIPEPLRWRNWAAD---PEGMTGEKLK-DFIDNTLFPGLQNLQPQGDDYRGVMIRSLFED 111 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++ LL ++ + +YE +++ S + A +F TPR Sbjct: 112 AYNYMKSGQLLRQVINKLQEGINFNKAGERHELGGVYEQILKDLQSAGN--AGEFYTPRA 169 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239 V + P + T+ DP CGTGGFLT A+ H + Sbjct: 170 VTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKRKHYVKTPQDEATLQ 219 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296 G E + H + V +++ +E I+ + L++ +R + Sbjct: 220 RSILGVEKKSLPHLLAVTNLILHGIE------NPDRIKHDNALARPLISWSPKERVEVIV 273 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG ++D +E R + +D LFL + L+ GRA Sbjct: 274 ANPPFGG---MEEDGIETNFPQAFRTR------ETAD---LFLTLFIHLLKPR----GRA 317 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK 414 A+VL LF + ++ LL + IV LP +F + T I T L + Sbjct: 318 AVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGA 373 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 E + K + + + + +D + +G +R + Sbjct: 374 PTEAIWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFTARRETEQA-- 426 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 ++ V + ++ LD E + ++ + Q+ Sbjct: 427 -WKVPVEQIKARNYNLDIKNPYAAEQQNHDPEQLLADYHQQQSEIQQLRDQLKE 479 >gi|193212615|ref|YP_001998568.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327] gi|193086092|gb|ACF11368.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327] Length = 488 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 75/307 (24%), Positives = 125/307 (40%), Gaps = 42/307 (13%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F ++ LL ++ + + ++IYE L+ S + A ++ T Sbjct: 110 FEDAYNYMKSGTLLRQVINIIEEDVDFNTSGDRHLFNDIYEKLLADLQSAGN--AGEYFT 167 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIP 237 PR V +L P + +L DP CGTGGFLT A+ H+ + + Sbjct: 168 PRAVTQFMVDML----------DPQLGESLLDPACGTGGFLTCAIEHLNEQVKTVDDREK 217 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHY 294 HG E +P H + V M++ ++ NI+ +TLS KD R Sbjct: 218 IQESLHGVEKKPLPHMLAVTNMMLHGIDV------PTNIRHDNTLSRPLKDYSPKDRVDL 271 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPPFG ++D +EK R + +D LF+ + + L+ G Sbjct: 272 IITNPPFGG---MEEDGIEKNFPRQYQTR------ETAD---LFMALIMHLLKPDT---G 316 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 +AA+VL LF + +++ LLE+ + IV LP +F T+IAT + Sbjct: 317 KAAVVLPDGFLFGEGVK---TTLKKELLESFDLHTIVRLPKGVFSPYTSIATNILFFKKG 373 Query: 414 KTEERRG 420 + Sbjct: 374 GPTKEVW 380 >gi|118578795|ref|YP_900045.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379] gi|118501505|gb|ABK97987.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379] Length = 488 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 141/394 (35%), Gaps = 57/394 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E Y + S S+ K N + L Sbjct: 33 LMFLKIFDDK-EQEWQLTVPGYKSPLPSRFRWSSWAK-------NPEGMTGEELI-DFVN 83 Query: 98 NNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N+L + + A + F ++ LL ++ + Sbjct: 84 NDLFPALKKLATAA-GVSPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDR 142 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++IYE ++ S + A ++ TPR V +L P + +T+ DP Sbjct: 143 HLFNDIYEKILSDLQSAGN--AGEYYTPRAVTRFMVDML----------DPQLGQTILDP 190 Query: 213 TCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 CGTGGFLT A+ H+ + G E +P H + + M++ ++ Sbjct: 191 ACGTGGFLTCAIEHLNHQVKTAADRTRLQECIFGVEKKPLPHMLAMTNMMLHGIDV---- 246 Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 N++ +TLS KD R ++NPPFG ++D +E R Sbjct: 247 --PTNVRHDNTLSRPLKDYGPKDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR---- 297 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +D LF+ + + L+ G+AA+VL LF + ++R LLE + Sbjct: 298 --ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGTK---TNLKRELLEEFNL 346 Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 IV LP +F T+IAT + Sbjct: 347 HTIVRLPKGVFSPYTSIATNILFFEKGGPTREVW 380 >gi|307155044|ref|YP_003890428.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822] gi|306985272|gb|ADN17153.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece sp. PCC 7822] Length = 606 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 106/591 (17%), Positives = 196/591 (33%), Gaps = 108/591 (18%) Query: 3 EFTGSAASLANFIWKNAEDLW------GDFKHTDFGKVILP----FTLLRRLEC---ALE 49 + +A L + I + + G+ LP L+ L+ E Sbjct: 11 QSQTTAQRLGSVIKSARDIMRKDKGLNGELDR-------LPQLTWIMFLKLLDDMEKVRE 63 Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYS--------------FYNTSEYSLSTLGSTN 95 + Y + +VK F N + L + Sbjct: 64 DEAFLEGKIYQSLLKYPYRWRDWVKQPNQPETTLHLLSGDQFLQFINNEKVILPDGKES- 122 Query: 96 TRNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + L +Y+ S N + + + F R+ LL + + I Sbjct: 123 --DGLFAYLRSLQSNTGRERQDLIREV-FRDVNNRMISGALLRDVVNKINDIHFDSSEEV 179 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + +SN YE +++ + +F TPR VV ++ P + T++D Sbjct: 180 NI-LSNFYESMLKEMRDAAG-DSGEFYTPRPVVRFMVKVI----------DPKLGETIHD 227 Query: 212 PTCGTGGFLTDAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 P CGT GFL + ++ + G E +P + + +L+ +E Sbjct: 228 PACGTAGFLIEVYEYLKGQCKADEWAMLQASLSGVEAKPLPYMLAQMNLLLHGVEY---- 283 Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +++ ++L + L + L+NPPFG E + F P Sbjct: 284 ---PDVEHRNSLGQPLTNLGQKDQVDIILTNPPFG-----------GEEEEKIKNNFPPK 329 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + + S+ ++LF + L+ P G R IV+ + LF ++++ LL + Sbjct: 330 M-QTSETALLFFQLIMRLLKKHPKPG-RGGIVVPNGVLFGDGIC---AKVKEQLLTQFNL 384 Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRII 444 IV LP +F T+I T L + E +V L +T K + + Sbjct: 385 HTIVRLPNGVFEPYTSIPTNLLFFDASGSTEEIWYYEVALPEGMKKFT-------KTKPM 437 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL--DKTGLARLEADI 502 D + L + +RE + + FG V + D A AD Sbjct: 438 QDGDFDECLVWWNNREENGQAWRYN---FG----AVYEAAKAKAQPHWDAANEALAMADK 490 Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 +++ L + +K + + E + + + K LK K S Sbjct: 491 CSKQIKQLEEK-----IKVLEVSNLDFTPVEQ---KKLLEKQIKELKGKIS 533 >gi|84616896|emb|CAJ13790.1| type I restriction-modification system, M subunit [Desulfococcus multivorans] Length = 488 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 144/394 (36%), Gaps = 57/394 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E Y + S S+ K N + L Sbjct: 33 LIFLKIFDDK-EQEWQLTVPGYKSPLPSRFRWSSWAK-------NPEGMTGEELI-DFVN 83 Query: 98 NNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N+L + + A + F ++ LL ++ + Sbjct: 84 NDLFPALKKLATAA-GVSPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDR 142 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++IYE ++ S + A ++ TPR V +L P + +T+ DP Sbjct: 143 HLFNDIYEKILSDLQSAGN--AGEYYTPRAVTQFMVDML----------DPQLGQTILDP 190 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRR 270 CGTGGFLT A+ H+ + L HG E +P H + + M++ ++ Sbjct: 191 ACGTGGFLTCAIEHLNKQVKTAEDRKRLQECIHGVEKKPLPHMLAMTNMMLHGIDV---- 246 Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 N++ +TLS KD R ++NPPFG ++D +E R Sbjct: 247 --PTNVRHDNTLSRPLKDYGPRDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR---- 297 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +D LF+ + + L+ G+AA+VL LF + ++R LLE + Sbjct: 298 --ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGTK---TNLKRELLEEFNL 346 Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 IV LP +F T+IAT + + Sbjct: 347 HTIVRLPKGVFSPYTSIATNILFFEKGGPTKEVW 380 >gi|78773878|gb|ABB51226.1| type I RM system M subunit [Arthrospira platensis] Length = 504 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 84/467 (17%), Positives = 161/467 (34%), Gaps = 75/467 (16%) Query: 38 FTLLRRLECALEPTR----SAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTL 91 L+ L+ LE R + + Y + K+ S L Sbjct: 32 LLFLKYLDD-LEQERSMEAELMGKSYEFILDETYRWSYWAVPKLPDGQIDRNSALIGDDL 90 Query: 92 GSTNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 + + L +Y+ F SD + + F + + L + + Sbjct: 91 INY-VNDVLFTYLKGFKQRATSSDTIEYKIGEI-FGEIKNKFQSGYSLRDALERIDELRF 148 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 +S++YE I+ G ++ TPR ++ ++ P + Sbjct: 149 QTQD-EKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIRVV----------KPKI 196 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIR 262 +YD CG+ GFL ++ +++ + L G+E + + + + M++ Sbjct: 197 GDRIYDGACGSAGFLCESYDYLRQDNLTTQQLRQLQTQTLFGKEKKSLAYVIAIMNMILH 256 Query: 263 RLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 ++ + NI +TL++ D+ RF L+NPPFG K K+ Sbjct: 257 GID-------APNIIHTNTLTENLSDIQDKDRFDVILANPPFGGKERKEVQQNFPI---- 305 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 K + + LFL H L++ GGRAAIV+ ++ L A + +R+ Sbjct: 306 ----------KTGETAFLFLQHFIKILKV----GGRAAIVIKNTFL--SNADNAARALRQ 349 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-RRGKVQLINAT---------- 428 LL + + +I+ P F + T + + +G Sbjct: 350 ELLSSCNLHSILDCPGGTFIGAGVKTVVLFFDKSNPTDAVQGMPLFSQGKSPTEELATRK 409 Query: 429 -DLWTSI--RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + RN G K +NDD R+ +++ + S +D Sbjct: 410 IWYYQLDPGRNMG-KTNPLNDDDLREFVELQATFAESDKSWSVDVAD 455 >gi|260579031|ref|ZP_05846931.1| type I restriction-modification system, M subunit [Corynebacterium jeikeium ATCC 43734] gi|258602832|gb|EEW16109.1| type I restriction-modification system, M subunit [Corynebacterium jeikeium ATCC 43734] Length = 388 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 31/233 (13%) Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296 +GQE + T A+ M++ E + +I+QG TLS F + F Y + Sbjct: 13 SIYGQEKDNATWALSRMNMILHGNE-------THDIRQGDTLSDPKFLKGEQLQTFDYFV 65 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +NPPF K K + E GRF G P +G FL+H+ L+ GR Sbjct: 66 ANPPFSVKTWK-------NGFDKEYGRFDGFAEPPEKNGDYAFLLHMVKSLKSD----GR 114 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A++L LF G E+ IR L+ LI+AI+ LP +LF+ T I + ++ ++ Sbjct: 115 GAVILPHGVLFRGNT---EAAIREELIRRGLIKAIIGLPANLFYGTGIPACIIVIDKKEA 171 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 R G + +I+A+ + +G K R + R+I+D Y++ ++ + + Sbjct: 172 ANRTG-IFMIDASKGFE---KDGAKNR-LRPRDMRKIIDTYLAGDDVERYARM 219 >gi|297209067|ref|ZP_06925467.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296886338|gb|EFH25271.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 266 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 117/289 (40%), Gaps = 26/289 (8%) Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QE T+ + ML+ + R + +I+ TL F G F ++NPP+ K Sbjct: 1 QERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDAVIANPPYSAK 55 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 W D E +G L S F+ H+ + L+ G A+VL Sbjct: 56 WTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGV 106 Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ V Sbjct: 107 LFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQEDYVL 161 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLR 482 I+A++ + GK + + D Q +I++ Y +E K+S + + Sbjct: 162 FIDASNDFEK----GKNQNHLTDAQVERIINTYKRKETIDKYSYSATLQEIADNDYNLNI 217 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 P R ++ L+ K + + ++++ Sbjct: 218 P-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEINAYLKELGVLKD 265 >gi|171057995|ref|YP_001790344.1| N-6 DNA methylase [Leptothrix cholodnii SP-6] gi|170775440|gb|ACB33579.1| N-6 DNA methylase [Leptothrix cholodnii SP-6] Length = 489 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 160/456 (35%), Gaps = 83/456 (18%) Query: 38 FTLLRRLECA---LEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ + LE TR + + + + D E A SF + + +L Sbjct: 34 LLFLKVFDALEEELELTRDGYKSPIPERMRWRNWAADAEGITGDALLSFVDNELFVTLKG 93 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L + R N Y+ + +FE ++ LL ++ +GI+ Sbjct: 94 LSADPLR-NPRGYV------VRGVFE-----DAYNYMKSGQLLRQVVNKLNGIDF-NRQS 140 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +++YE +++ S + A +F TPR V ++ +P + ++ Sbjct: 141 ERHQFNDLYEKILKDLQSAGN--AGEFYTPRAVTQFMVDMV----------NPQLGERVF 188 Query: 211 DPTCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 DP GTGGFL A+ H+ + + G E + H +CV +++ +E Sbjct: 189 DPATGTGGFLVCAIEHLRRQVHNTEQEAQLQNSILGVEKKQLPHMLCVTNLMLHGIEV-- 246 Query: 269 RRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 ++ +TL +D R L+NPPFG E + F Sbjct: 247 ----PSQVRHDNTLARPLRDYGAADRVDVVLTNPPFGGIEEPGIEQG-----------FP 291 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + + + + LFL+ + L+ GRAA+VL LF + I+ LL Sbjct: 292 ADV-RTKETADLFLVLIKQLLKH----NGRAALVLPDGTLFGEGVK---TRIKEQLLAEC 343 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK-RRI 443 + IV LP +F T I T L + + A + G K Sbjct: 344 KLHTIVRLPNGVFAPYTGIKTNLLFFTKGAPTQ---------AIWYYEHPYPAGAKSYNK 394 Query: 444 INDDQRRQI----------LDIYVSRENGKFSRMLD 469 + + D + +R + + +D Sbjct: 395 TRPIRIEEFDAEKAWWGSEADGFAARVENERAWKVD 430 >gi|308190348|ref|YP_003923279.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma fermentans JER] gi|319777745|ref|YP_004137396.1| n-6 DNA methylase [Mycoplasma fermentans M64] gi|307625090|gb|ADN69395.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma fermentans JER] gi|318038820|gb|ADV35019.1| N-6 DNA methylase [Mycoplasma fermentans M64] Length = 551 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 98/606 (16%), Positives = 219/606 (36%), Gaps = 110/606 (18%) Query: 1 MTEFTGSAASLANFIWKNAEDLWG-------DFKHTDFGKVILPFTLL-RRLECALEPTR 52 MT FT ++ + I +DL G + ++++ L + L Sbjct: 1 MTNFTKLENNIKSII----DDLKGLCSTNGLSNTAGE--EIVVTSVFLYKFLNDKF---- 50 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNLESYIA----- 105 + N+ E +K + Y FY+ ++ + L YI Sbjct: 51 --ISNLKKFAKELNVPFEEIIKNSNYMDGFYDAYPQDVAFKYEDTI-DYLVGYINEDDFY 107 Query: 106 -SFSDNAKAIF-----EDFD--------------FSSTIARLEKAGLLYKICKNFSG--I 143 F D I E F+ S+ + ++ + + Sbjct: 108 QKFDDTLIRISDYKQNEAFNVDTAEGTKKPLFVRLSTFVEPSKRNNFTKNVFSYITRDRF 167 Query: 144 ELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + S I+E+LI + + ++ TP+ + +L+ Sbjct: 168 DFGEAFNNNYDFFSTIFEYLISDYNIASGK-YAEYFTPQTLSKAIGEILV-----KMSPI 221 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 I +YDP+ G+G + H+A+ K + Q++ ++ ML+ Sbjct: 222 EDKIYEIYDPSAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLN 277 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWEKDKDAVE 313 L+ + NI +G TL K +F + SNPPF + +D +E Sbjct: 278 GLK-----ESLDNIIEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIE 332 Query: 314 KEHKNGELGRFGPGLP--KISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 +N E RF G+P + +LF+ H+ L+ GG+AAIV+ + F Sbjct: 333 LMWQNTE--RFFAGIPKVPKTKKDSMAIYLLFIQHILYSLKE----GGKAAIVVPTG--F 384 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 E IR+++++ ++ ++++P+++F T + + G+V L++ Sbjct: 385 ITAQSGIEKTIRQYIIDRKWLKGVISMPSNIFANTGTNVSVLFIDK---TNTNGEVLLMD 441 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLR 485 A+ + + + ++ ++ D+ +I++ +V+ + F+ + + Sbjct: 442 ASKMGHKEKVKDLQKTVLTHDELNKIVNDFVNHKVEDDFTI----------SVTYDQIKE 491 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 ++ L ++ + + Q + ++ +++ + ++ + S Sbjct: 492 RNYSLSAGQYFEVKIE-----YVDITQEEFDKMIDDFNKELEQF-TKDTEEFQKEMSKTL 545 Query: 546 KTLKVK 551 K LK+K Sbjct: 546 KELKLK 551 >gi|154244736|ref|YP_001415694.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2] gi|154158821|gb|ABS66037.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2] Length = 710 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 98/544 (18%), Positives = 181/544 (33%), Gaps = 86/544 (15%) Query: 38 FTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAG-------YSFYNTSEYS 87 L+ ++ E E Y + + + SF N Sbjct: 49 LMFLKFVDDMERVHEDEAVLAGETYRSLIDPPYRWRDWASDSAGITGPDLLSFINGE--- 105 Query: 88 LSTLGSTNT-RNNLESYIASFSDNA-----KAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 T+ + T L +Y+ S N + + F +L + + Sbjct: 106 -QTVRADGTKGPGLFTYLRSLRGNGEGRQRRDVVSAV-FRDLRNYATSGYVLRDVINLVN 163 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 I T + + +YE L+R + +F TPR VV ++ Sbjct: 164 DIHF-DSTEDIQTLGRMYETLLREMRDAAGQN-GEFYTPRPVVRFMVQVI---------- 211 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAG 258 P + T+ DP CGTGGFL A +H+ D +I G E + Sbjct: 212 DPKLSETVLDPACGTGGFLAAAFDHMKPSADTVEKREILQRSTLRGGEDSSLPFLLAQMN 271 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 +L+ LE + +I+ G+ L ++ R L+NPPFG + ++ + Sbjct: 272 LLLHGLE-------APDIEFGNALRFKLTEIGERDRVEVILTNPPFGGE---EEAGILTN 321 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + + ++ ++LFL + +L+ G GRA +V+ + LF + Sbjct: 322 FPDDR---------RTAETALLFLQLIMRRLK--RGGHGRAGVVVPNGILFGDGIA---A 367 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 I+ LLE + IV LP F T+I T + G + W Sbjct: 368 RIKADLLEQFNLHTIVRLPEGTFAPYTDIPTNIIFFDTSGP---TGDI------WYWEQP 418 Query: 435 ----RNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-----DYRTFGYRRIKVLRPLR 485 R + K + + ++ L+ + +R+ G + + R R I V L+ Sbjct: 419 LPGGRRKYSKTQPLLYEELTDCLEWWSARKEGPQAWKVFGPSLIKRDTEGRTIAVDLDLK 478 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 A + + + Q L +L + + + S + + A Sbjct: 479 NP----HAKEANHRRPVEIIESAVAKQRELLAVLDELRALVGAFDKITSNSPRAKLGDIA 534 Query: 546 KTLK 549 ++ Sbjct: 535 PLVR 538 >gi|78357541|ref|YP_388990.1| type I restriction-modification system, M subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219946|gb|ABB39295.1| type I restriction-modification system, M subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 488 Score = 170 bits (431), Expect = 8e-40, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 144/394 (36%), Gaps = 57/394 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E Y + S S+ K N + L Sbjct: 33 LIFLKIFDDK-EQEWQLTVPGYKSPLPSRFRWSSWAK-------NPEGMTGEELI-DFVN 83 Query: 98 NNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N+L + + A + F ++ LL ++ + Sbjct: 84 NDLFPALKKLATAA-GVSPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDR 142 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++IYE ++ S + A ++ TPR V +L P + +T+ DP Sbjct: 143 HLFNDIYEKILSDLQSAGN--AGEYYTPRAVTQFMVDML----------DPQLGQTILDP 190 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRR 270 CGTGGFLT A+ H+ + L HG E +P H + + M++ ++ Sbjct: 191 ACGTGGFLTCAIEHLNKQVKTAEDRKRLQECIHGVEKKPLPHMLAMTNMMLHGIDV---- 246 Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 N++ +TLS KD R ++NPPFG ++D +E R Sbjct: 247 --PTNVRHDNTLSRPLKDYGPRDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR---- 297 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +D LF+ + + L+ G+AA+VL LF + I+R LLE + Sbjct: 298 --ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGVK---TTIKRELLEEFNL 346 Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 IV LP +F T+IAT + + Sbjct: 347 HTIVRLPKGVFSPYTSIATNILFFEKGGPTKEVW 380 >gi|295401869|ref|ZP_06811833.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|312110990|ref|YP_003989306.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1] gi|294976123|gb|EFG51737.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|311216091|gb|ADP74695.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1] Length = 643 Score = 170 bits (431), Expect = 8e-40, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 149/376 (39%), Gaps = 53/376 (14%) Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY-EHL 162 + S + +F + F + LYK+ L + + ++ E L Sbjct: 78 LESIEPSLSGVFLNDTFKNIEET-----TLYKLVVLLERYGLTKTEYQNNEATTVFFETL 132 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I+ ++ TP + L L + ++YD T G L D Sbjct: 133 IK---ELLASSKGYDFTPDGLSQLMIQAL-----------KPITGSVYDGTAGIANILVD 178 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A + G +GQE+ E + + + + + + +++ G T+ Sbjct: 179 AYRYAKGKGKDI------SVYGQEINEELYVIGKLNLFVNHILPEQG-----DMKLGDTI 227 Query: 283 SKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSML 337 + +F Y + N PFG + + A+ N RF LP S G Sbjct: 228 RDPKWLENGRLMQFDYIMMNFPFGLRDWGYEFAI-----NDPYHRFELYALPSKSQGDYS 282 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F++H L G+AA+++ L G A E +IR LL++D+IE+IV+LP +L Sbjct: 283 FILHALASLNQE----GKAALIVPFGTLVRGAA---ERKIRSILLKDDVIESIVSLPNNL 335 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F T I L +L+ K ++GKVQ INA + R ++ + ++I++ Sbjct: 336 FSGTGIQVALLLLNKHKPSHKKGKVQFINAEGDYERTRT----QKYLTSKHVQKIIETLE 391 Query: 458 SRENGK-FSRMLDYRT 472 + EN + +SR++ Sbjct: 392 AYENKEKYSRIVTIDE 407 >gi|78776896|ref|YP_393211.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] gi|78777791|ref|YP_394106.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] gi|78497436|gb|ABB43976.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] gi|78498331|gb|ABB44871.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] Length = 530 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 96/500 (19%), Positives = 194/500 (38%), Gaps = 66/500 (13%) Query: 9 ASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67 SL ++ W ++ L + + + I+ F L+ L + + + Sbjct: 13 KSLCDYYWAYSDILRDIGINESTYDQRIMAFMALKLLID-----NDKLMFTFEYNNNFGL 67 Query: 68 DLESFVK----VAGYSFYNTSE-----------YSLSTLGSTNTRNNLESYIASFSDNAK 112 D F K +F N + ++ + + +T N+ +Y+ F Sbjct: 68 DHAIFAKYDLGETKKTFLNIIKNIEKLGQNLNYFTQESKYNPDTSKNILTYLNHF----- 122 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + F+ I L L + ++ D P ++YE I R + Sbjct: 123 ---KTFELERYIQELP-NNYLENVLDIYTYKANFRD-YPKEQYKDLYEATISRMKKLSGD 177 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 T + +VHL + + K + +YDPTCGT L ++ ++ Sbjct: 178 LTGQHFTQKSIVHLMCEVSKFEAEGYDKLA------IYDPTCGTASMLMESAHYF----Y 227 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---- 288 + + +GQEL +T + + I L+ + + I G+TL+ F Sbjct: 228 NKNKIENIEVYGQELHGQTWLLAKIFLEISSLDGKSQGIKNT-IAYGNTLTNPAFANGIN 286 Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGRFGPGLPKISDGSMLFLM 340 F + ++NPPFG W+ + D + + + + + PK SDG LF+ Sbjct: 287 GDTSFDFIIANPPFGVDWKHNYDEIVQNMSSKKSDFFVVKDEKNKVVTPKKSDGQFLFMQ 346 Query: 341 HLANKLELPPNGG--GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 H+ N ++ AAI+ SS+ + G A S ES+IR+ + + A++ P+ +F Sbjct: 347 HIINLMKSEKRRNKHAHAAIISSSTLISTGNATSSESKIRKEIFNTGFVSAVLEQPSAMF 406 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-----KKRRIINDDQRRQIL 453 T+I++++W L + K+ ++ A + + K + + R++ Sbjct: 407 TNTDISSHIWFLD----SDPSEKITIVKADTKEEELFSPHLQAKDKMKNSYSQKNIRRLA 462 Query: 454 DIYVSRENGKF-SRMLDYRT 472 + S++ K+ S+ +D + Sbjct: 463 TLINSKKEFKYKSKFIDSKD 482 >gi|262371154|ref|ZP_06064475.1| type I restriction enzyme, M protein [Acinetobacter johnsonii SH046] gi|262313884|gb|EEY94930.1| type I restriction enzyme, M protein [Acinetobacter johnsonii SH046] Length = 504 Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats. Identities = 78/521 (14%), Positives = 169/521 (32%), Gaps = 90/521 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +RRL+ + T+ K I +E + S++ Sbjct: 40 LLFIRRLDEI-QITKEKKANKLSQIKKQTIAVEHPIFTPEQDHLRWSKF----------- 87 Query: 98 NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144 L ++ A +F D ++ ++ A LL K+ + + Sbjct: 88 ITLGDAATLYNTVANEVFPFIKNLGAEDETTYSHHMKDARFTIPTPALLTKVVDLVADVP 147 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + +IYE+++ + + F TPR ++ + L+ P Sbjct: 148 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------QPK 191 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCV 256 T+ DP CGT GFL A ++ D K G + + + Sbjct: 192 PTDTICDPACGTAGFLVAASEYLNDHYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGS 251 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + I+ +LS+ ++ L+NPPF + + A + Sbjct: 252 MNMMLHGVE-------NPRIENRDSLSETHSHIESKYSLILANPPFAGSLDNESCAKNIQ 304 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + K + GGRAA+++ LF + Sbjct: 305 A-----------VVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSKAHK 347 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 ++R+ ++E +EAI+++P+ +F ++T + I + + KV + Sbjct: 348 DLRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY-- 404 Query: 435 RNEGKKRRIIND-----DQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRP 483 + KR ++ + I+ + + R+ + S M+D + Sbjct: 405 -SLDDKRNELDASKHENNNIPDIIARFKNLEAESTRKATEQSFMVDKADIAANGYDLSIN 463 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + ++ + ++ + LK M++ Sbjct: 464 RYKEVVYEQVEYEAPSKILADLEVLEQDILKGMTTLKEMLK 504 >gi|254777457|ref|ZP_05218973.1| type I restriction-modification system, M subunit [Mycobacterium avium subsp. avium ATCC 25291] Length = 474 Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats. Identities = 76/441 (17%), Positives = 155/441 (35%), Gaps = 55/441 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + LE R E + + + + +L T + Sbjct: 28 LLFLKAFDG-LEENREITEENFRPAIEAPYRWRDWAADPNGR----TGDALLTFVNNELL 82 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L + S + + + F T R+ LL + + I + M++ Sbjct: 83 PYLRGLSGTGSHDPRDVLAAV-FKETYNRMLSGYLLRDVVNKVNEINFA-SSDDIHTMAH 140 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE ++R + +F TPR ++ + P + + DP CGTG Sbjct: 141 LYESMLREMRDAAG-DSGEFYTPRPIIRFIVQQV----------DPRLGEVILDPACGTG 189 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFL +A+ H+ + G E +P + + +++ + N Sbjct: 190 GFLVEALEHLSPKVTTTAQLRALHENLRGIEKKPLPFLLGMMNLVLHGV-------GQPN 242 Query: 276 IQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I +G+ L++ + +R L+NPPFG + ++ +++ + + Sbjct: 243 ITRGNALAESITQISKARRVDVILTNPPFGGE---EEKSIQANFPADKQ---------TA 290 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LFL + L+ GGR IV+ + LF G G + I++ LL + IV Sbjct: 291 ETAWLFLQLVIRMLKD----GGRCGIVVPNGLLFGGGVG---ARIKKQLLTECNLHTIVR 343 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP F T+I + L + ++ R + K + + ++ Sbjct: 344 LPDGAFAPYTDIPSNLLFFDKTGRTKEIWYYEISPPEG-----RKKYSKSKPMRFEEFAD 398 Query: 452 ILDIYVSRENGKFSRMLDYRT 472 + +R + + + Sbjct: 399 CQVWWSNRVENERAWRVPIAD 419 >gi|146279551|ref|YP_001169709.1| EcoEI R domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557792|gb|ABP72404.1| EcoEI R, C-terminal domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 481 Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats. Identities = 108/526 (20%), Positives = 188/526 (35%), Gaps = 94/526 (17%) Query: 38 FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ ++ ALE TR L + D E SF N S + L Sbjct: 33 MFFLKIIDDQDEALELTRDEYISPIPADLQWRAWAADPEGMTGDELLSFVNESLFPRLKN 92 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L T R + + +FED ++F ++ LL ++ +G++ + Sbjct: 93 LRPTAPRARV----------IRDVFEDAYNF------MKSGQLLRQVINKINGVDF-NNL 135 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +IYE L+ + + A ++ PR V + P L Sbjct: 136 TERQHFGDIYEQLLNDL--QNAGNAGEYYDPRAVTAFMVQQI----------DPRPGEIL 183 Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP CGTGGFLT AM H+ D H+ E +P H +CV ML+ +E Sbjct: 184 MDPACGTGGFLTCAMRHMRDRHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVEE 243 Query: 267 DPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++ +TL++ L + +R L+NPPFG K ++G Sbjct: 244 PHF------VRHDNTLARPLTSWSRDERVDIVLTNPPFGGKE-----------EDGIENN 286 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F + + + LFL + L+ GGRAA+VL LF ++ ++ L+ Sbjct: 287 FP--TFRTRETADLFLALIIRLLKP----GGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + IV LP +F +I T L T W EG+K Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPTSE---------TWFWEHRVPEGQKAY 388 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + R + L G R +V P ++ + + ++ Sbjct: 389 SMTKPIRLEHLQRCADWWGG-----------ANREGRVEGPE--AWKVSAEEIKGRGYNL 435 Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548 + P ++ L + ++ + + ++E++K+ + L Sbjct: 436 DIKN--PHAEAEDLGDPEHLLAALDGAEAEVTRLREALKAILTEAL 479 >gi|217980300|ref|YP_002364276.1| N-6 DNA methylase [Shewanella baltica OS223] gi|217500937|gb|ACK48909.1| N-6 DNA methylase [Shewanella baltica OS223] Length = 492 Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats. Identities = 94/515 (18%), Positives = 173/515 (33%), Gaps = 84/515 (16%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSE--YSLS 89 L+ L+ E + +D E G N L+ Sbjct: 34 LFLKFLDD-YESEKEDEAVLSGKDYQPVLDEEHRWSNWACPKNAEGKLDINQVRTGDDLT 92 Query: 90 TLGSTNTRNNLESYIAS---------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 + L+S+ + F+ AIF+ D ++ L ++ Sbjct: 93 DYVNNELFPYLKSFANAAVTGSDPKSFAYKIGAIFQYLD-----NKVASGHTLREVLDII 147 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 + + +S +YE L++ G + A +F TPR VV + Sbjct: 148 DTLNFQ-SSDEMFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMIKAI--------- 196 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETHAVC 255 P +T+YD G+ GFL + H+ G E + + Sbjct: 197 -DPQAGQTIYDAAAGSCGFLVEVFEHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMG 255 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + M++ +E S N+ +G+TL++ D+ R+ L+NPPFG K + Sbjct: 256 MMNMILHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKDQIQQN 308 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + + +LFL H L+ GG+AAIV+ LF + S Sbjct: 309 FPI--------------RANATELLFLQHFMKTLKS----GGKAAIVVPEGVLF--QTNS 348 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431 ++++ LLEN + I++LP +F + + T + V Sbjct: 349 AFKQVKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSDVWYYECEPE- 404 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF-GYRRIKVLRPLRMSFIL 490 + K + I D+ ++ +++Y SRE + S + + P + Sbjct: 405 ----KKLTKNKPITDEHLKEFVELYRSRETTERSWTVSASKLSEDYDLSAKNPAK---QK 457 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 D LA + R L +I + ++ Sbjct: 458 DAEHLAPSDILKQIRIKEKLVSGLLDEIEDLLAEK 492 >gi|94265771|ref|ZP_01289506.1| N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93453706|gb|EAT04087.1| N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 498 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 89/534 (16%), Positives = 167/534 (31%), Gaps = 73/534 (13%) Query: 11 LANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ I + + D G+ L L+ + R E + S Sbjct: 3 ISTTIKAIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDD-----REVEWEMFDDAYRS 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122 I + + L N L + + + + + F Sbjct: 56 PIPEPLRWRNWAAD---PEGMTGEKLK-DFIDNTLFPGLQNLQPQGDDYRGVMIRSLFED 111 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++ LL ++ G + +YE +++ S + A +F TPR Sbjct: 112 AYNYMKSGQLLRQVINKLQGGINFNKAGERHELGGVYEQILKDLQSAGN--AGEFYTPRA 169 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239 V + P + + DP CGTGGFLT A+ H + Sbjct: 170 VTRFMVNRV----------DPKLREMVMDPACGTGGFLTCAIEHKRKHYVKTPQDEATLQ 219 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296 G E + H + V +++ +E I+ + L++ +R + Sbjct: 220 RSILGVEKKSLPHLLAVTNLILHGIE------NPDQIKHDNALARPLISWSPKERVEVIV 273 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG ++G F L + + + LFL + L+ GRA Sbjct: 274 ANPPFGGME-----------EDGIETNFPQAL-RTRETADLFLTLFIHLLKPR----GRA 317 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK 414 A+VL LF + ++ LL + IV LP +F + T I T L S Sbjct: 318 AVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFSKGA 373 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 E + K + + + + +D + +G +R R Sbjct: 374 PTEAIWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFTARRETERA-- 426 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 ++ V + ++ LD E + + ++ + Q+ Sbjct: 427 -WKVPVEQIKARNYNLDIKNPYAAEQQNHDPEQLLADYHQQQNEIQQLRDQLKE 479 >gi|307720724|ref|YP_003891864.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294] gi|306978817|gb|ADN08852.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294] Length = 495 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 99/515 (19%), Positives = 180/515 (34%), Gaps = 91/515 (17%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-- 93 L+ L + ++Y N S+ + L S Sbjct: 32 LFLKFLNDLEDSKADEALLNGQEYTYILDDNYKWSSWACPKDAK----GKLDLINAKSGE 87 Query: 94 ---TNTRNNLESYIASFSDNAKA----------IFEDFDFSSTIARLEKAGLLYKICKNF 140 L Y+ F + IFE D R+ L ++ Sbjct: 88 DLLEFVNKELFPYLKGFKSLTQDPKSIKYKIGAIFEYLD-----NRIANGHTLREVLDII 142 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 ++ H + +S IYE L++ GS+ + +F TPR ++ + ++ Sbjct: 143 DELDFH-NQADLFQLSLIYEKLLKDMGSDGG-NSGEFYTPRPLIKVIADVV--------- 191 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-----------ILVPHGQELEP 249 +P + T+YDP G+ GFL +A NH+ + G E P Sbjct: 192 -NPVIGETVYDPAAGSCGFLIEAYNHIRYINAEENKQRELSTEQLKFLNEDTFFGNEKTP 250 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWE 306 ++ + V M++ +E S NI + +TL+KD L +RF L+NPPFG Sbjct: 251 LSYVMGVMNMILHGIE-------SPNIAKTNTLTKDIRGLEEKERFDCILANPPFGG--- 300 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 K+ D++++ P S+ +LFL H+ N L+ G+ +V+ L Sbjct: 301 KENDSIQQNF------------PIKSNATELLFLQHMMNYLK----LNGKCGVVIPEGVL 344 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424 F + +++ LLE + I++LP +F + + T + ++ Sbjct: 345 F--QTNKAFQAVKQELLERFNVHTILSLPAGIFLPYSGVKTNVIFFDR---AGATSEIFY 399 Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484 + K + I + ++ LD + R + S ++ I P Sbjct: 400 YEVNPPYKLT-----KNKPIKYEHFKEFLDTWQERTLTENSWVVHVNNIKDYDISAKNPN 454 Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + I K+ L +E T K +L Sbjct: 455 KNEVIEHKSPLELVENIKTNNKEINDLMDEIEAVL 489 >gi|149369905|ref|ZP_01889756.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49] gi|149356396|gb|EDM44952.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49] Length = 541 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 92/517 (17%), Positives = 191/517 (36%), Gaps = 84/517 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDL--------WGDFKHTDFGKVILPFTLLRRLECA----- 47 MT T I +DL G+ +F +I L + L Sbjct: 1 MTNTTKFETQTKALI----DDLKSVCANYGLGN-DGNEFK-IITQVFLYKFLNDKYVYEL 54 Query: 48 --LEPTRSAVREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGSTNTRNNL--- 100 LEP + + A + D + +++ + + LS L + + Sbjct: 55 KQLEPDLAKAEDFDAALKKYSDDDLELLTMQISENTARIAPKNLLSRLFEQQNKPDFADT 114 Query: 101 ---------ESYIASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDT 149 + I FS + + F + +K + G Sbjct: 115 FDETLVSVAKDNIDIFSVLTQGGEKVVLFENLSKYVTDKKDDFCKALVNKLVGFSFEHIF 174 Query: 150 VPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + I+E+LI+ + S ++ TP V + A L+ DD T Sbjct: 175 TQKFDFFATIFEYLIKDYNSNSGGKYAEYFTPHAVAKIMAACLVTGDDVN-------NVT 227 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 YDP+ G+G L + + + + + Q++ ++ A+ L + Sbjct: 228 CYDPSAGSGTLLMNIAHAIGE--------DKCTIYSQDISQKSSALLR-----LNLILNN 274 Query: 269 RRDLSKNIQQGSTLSKDLFT-----GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 +NI QG+T+ ++F Y +SNPPF + ++ + R Sbjct: 275 LVHSIQNIIQGNTILNPYHKQDNGQLEQFDYIVSNPPFKLDFSDYSADLDSKANKE---R 331 Query: 324 FGPGLP--KISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 F G+P +LF+ H+ + L G+AAIV+ + F + + Sbjct: 332 FFAGIPKVPAKKKDSMAIYLLFIQHIMHSL----TAKGKAAIVVPTG--FITAQSGIDKK 385 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR+ L+E+ ++ +V++P+++F T + L V L++A++L T +++ Sbjct: 386 IRQKLVESKMLAGVVSMPSNIFATTGTNVSILFLDK----TNTKDVVLVDASNLGTKVKD 441 Query: 437 EGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRT 472 ++ +++ ++ +QI++++ ++E S ++ Y Sbjct: 442 GKNQKTVLSPEEEQQIINVFNAKEAKDDLSVVVSYDD 478 >gi|94266804|ref|ZP_01290468.1| N-6 DNA methylase [delta proteobacterium MLMS-1] gi|93452526|gb|EAT03115.1| N-6 DNA methylase [delta proteobacterium MLMS-1] Length = 498 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 89/534 (16%), Positives = 167/534 (31%), Gaps = 73/534 (13%) Query: 11 LANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGGS 65 ++ I + + D G+ L L+ + R E + S Sbjct: 3 ISTTIKAIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDD-----REVEWEMFDDAYRS 55 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122 I + + L N L + + + + + F Sbjct: 56 PIPEPLRWRNWAAD---PEGMTGEKLK-DFIDNTLFPGLQNLQPRGDDYRGVMIRSLFED 111 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++ LL ++ + +YE +++ S + A +F TPR Sbjct: 112 AYNYMKSGQLLRQVINKLQEGINFNKAGERHELGGVYEQILKDLQSAGN--AGEFYTPRA 169 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239 V + P + T+ DP CGTGGFLT A+ H + Sbjct: 170 VTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKRKHYVKTPQDEEILQ 219 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296 G E + H + V +++ +E I+ + L++ +R + Sbjct: 220 RSILGVEKKSLPHLLAVTNLILHGIE------TPDRIKHDNALARPLISWSPKERVEVIV 273 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG ++D +E R + +D LFL + L+ GRA Sbjct: 274 ANPPFGG---MEEDGIETNFPQAFRTR------ETAD---LFLTLFIHLLKPR----GRA 317 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK 414 A+VL LF + ++ LL + IV LP +F + T I T L + Sbjct: 318 AVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGA 373 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 E + K + + + + +D + +G +R R Sbjct: 374 PTEAIWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFSARRETERA-- 426 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 ++ V + ++ LD E + ++ + Q+ Sbjct: 427 -WKVPVEQIKARNYNLDIKNPYAAEQQNHDPEQLLADYHQQQSEIQQLRDQLKE 479 >gi|297207477|ref|ZP_06923913.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887813|gb|EFH26710.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 266 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 115/289 (39%), Gaps = 26/289 (8%) Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 QE T+ + ML+ + + I+ TL F G F ++NPP+ K Sbjct: 1 QERNNTTYNLARMNMLLHDVRYENFE-----IRNDDTLENPAFLGNTFDAVIANPPYSAK 55 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 W D E +G L S F+ H+ + L+ G A+VL Sbjct: 56 WTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGV 106 Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + +K ++ V Sbjct: 107 LFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVL 161 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLR 482 I+A++ + GK + ++D Q +I+D Y + K+S + + Sbjct: 162 FIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKATIDKYSYSATLQEIADNDYNLNI 217 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 P R ++ L+ K + + ++++ Sbjct: 218 P-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 265 >gi|322517065|ref|ZP_08069950.1| type I restriction-modification system DNA-methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322124325|gb|EFX95833.1| type I restriction-modification system DNA-methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 534 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 94/542 (17%), Positives = 211/542 (38%), Gaps = 73/542 (13%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAF-GGSNIDLESFVKVAGYSF-Y 81 + ++ +L + L + L V + Y S D + ++ G S + Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFLYEAQNVDSENTYEYLVSMSEEDYDWLLEDIGTSTAW 85 Query: 82 NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123 + TL ++ E+ + + + IF E + Sbjct: 86 MKPNQFIETLHRKQNESDFYETFENTLNQIAIDNNDIFSVHTEGDTTVRLFDERLITDNI 145 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 ++ + I + ++ + D S ++E++I+ + + ++ TP Sbjct: 146 SDSSKRNEVAKAIINLLAKVKFNQDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + +L+ D +YDP+ G+G L + + + Sbjct: 206 SVAKIIAEILVGNDK-------PQNVRIYDPSAGSGTLLMNLASRI--------GVDKAT 250 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 + Q++ ++ + L + + NI +G+T+ ++ ++ Y +SNPPF Sbjct: 251 VYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVEGNTILRNRHP-EKMDYIVSNPPF 304 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM----LFLMHLANKLELPPNGGG 354 + K +D VE + E RF G+P S M LF+ H+ L+ G Sbjct: 305 KLDFSKWRDQVETLPEASE--RFFAGVPKTLPKSKDKMAIYELFIQHIIYSLKPD----G 358 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + F + +IR+ L++N ++ +V++P+++F T + + + Sbjct: 359 QAAVVLPTG--FITAQNGIDKKIRQHLVDNQMMAGVVSMPSNIFATTGTKVSILFIDKK- 415 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 +G V LI+A++L T I+ ++ +++ ++ ++I++ ++ +E + FS + Y Sbjct: 416 ---NKGDVVLIDASNLGTKIKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYEDI 472 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQIYPY 529 + + +D + E + KLS L Q + K + +Q+ Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMAAFQSKLSDLFQQSH-ALEKEIEEQLKGL 531 Query: 530 GW 531 + Sbjct: 532 KY 533 >gi|313114695|ref|ZP_07800197.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622920|gb|EFQ06373.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255] Length = 510 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 78/526 (14%), Positives = 163/526 (30%), Gaps = 106/526 (20%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +R L+ + E + G ++ AG S S ++R Sbjct: 35 LMFIRSLD-----EKELATEDFENMAGEKMEHIFPASEAGQS------MRWSRFKDKDSR 83 Query: 98 NNLESYIASFSDNAKAI----FEDFDFSSTI------------------ARLEKAGLLY- 134 + K + DFD + + ++ A L Sbjct: 84 EIFLTMQQRVFPAIKKMKYGRLPDFDANGELVEIVDDPTRPDEGNTAFARYMDDAMFLIP 143 Query: 135 --KICKNFS---GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 ++ + D + ++YE+++ + + F TP ++ + Sbjct: 144 TPQVLQKIITGLEDLYTHDIADLDMQGDLYEYMLGKLATAG--RNGQFRTPLHIIDMMVE 201 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------ 243 L+ P + DP CGT GFL + +V P Sbjct: 202 LV----------QPTPDDFICDPACGTAGFLVSSAKYVRKHYGDDMTPEQWQHFAGPMFT 251 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 G + + + +++ + + I ++SK ++ CL+NPPF Sbjct: 252 GFDTDRTMLRISAMNLMLHSI-------TNPEIDYKDSVSKQNSICSKYTVCLANPPF-- 302 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K D +++ + K + +LFL L+ GGR A ++ Sbjct: 303 KGTVDAESINDDLK---------AVTNTKKTELLFLALFLRMLKT----GGRCACIVPDG 349 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 LF + IR+ L+EN + A++++P+ +F ++T + + + KV Sbjct: 350 VLF--GSSKAHQSIRKELIENHQLRAVISMPSGVFKPYAGVSTAVLVFTKT-GAGGTDKV 406 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFSRMLD------- 469 + + + KR + ++ I+ + R+ + S + Sbjct: 407 WFYD---MKADGFSLDDKRTEVKENDIPDIIARFHNLNAEIDRKRTEQSFFVPKEEIAAN 463 Query: 470 ------YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 + + V P + D L +E +L Sbjct: 464 GYDLSINKYKETEYVPVEYPSTQEILADLHELE-MEITKGLAELEE 508 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 610 HVPDAYIDKIFIDEK----DKEIGRVGYEINFNRFF---YQYQPSRKLQDIDAELKGVEA 662 H +A ID+ ++ +EI GY+++ N++ Y Q+I A+L +E Sbjct: 438 HNLNAEIDRKRTEQSFFVPKEEIAANGYDLSINKYKETEYVPVEYPSTQEILADLHELEM 497 Query: 663 QIATLLEEM 671 +I L E+ Sbjct: 498 EITKGLAEL 506 >gi|192289909|ref|YP_001990514.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1] gi|192283658|gb|ACF00039.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1] Length = 513 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 74/429 (17%), Positives = 146/429 (34%), Gaps = 69/429 (16%) Query: 35 ILPFTLLRRLECAL--EPTRSAVREK--------YLAFGGSNIDLESFVKVAGYSFYNTS 84 I +R L+ A E ++ +K G ++ + N Sbjct: 32 ITYLLFIRGLDEAHSREENKANRLKKPMARRIFPEGKDGIGKKGGVAYEDLRWSRLKNRD 91 Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 ++ LGS + L + + +A + LL K+ + I Sbjct: 92 PATMFELGSEHVFPFLRNMAEEGTAHAT------HMKGARFTIPTPALLAKVVDLLADIP 145 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + ++YE+++ + + F TPR ++ L + +P Sbjct: 146 ME----DRDTKGDLYEYMLAKIATAG--QNGQFRTPRHIIALMVEM----------TAPT 189 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVA 257 + DP CGT GFL A + D + HG + + + Sbjct: 190 PKDVIVDPACGTCGFLVAAGEFLRDNHPKLFHDAESRDHFNQEMFHGFDFDGTMLRIGSM 249 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEH 316 M + +E +I+ +LS++ + R+ L+NPPF + + A + Sbjct: 250 NMTLHGVE-------DPDIRYKDSLSQEHAGDEGRYSLVLANPPFAGSLDYETTAKDL-- 300 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + K +LF+ L+ GGRAA+++ LF + + Sbjct: 301 ---------LAVVKTKKTELLFMALFLKLLKP----GGRAAVIVPDGVLF--GSSTAHKT 345 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 IR+ L+EN ++ IV LP+ +F ++T + + + + V + Sbjct: 346 IRKMLVENHRLDGIVKLPSGVFRPYAGVSTAIVLFTKTNSG-GTDHVWFYDCHADGQ--- 401 Query: 436 NEGKKRRII 444 + KR + Sbjct: 402 SLDDKRSYL 410 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 632 GYEINFNRF---FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 GY+++ NR+ ++ R ++I AELK +E +IA L+E+ Sbjct: 467 GYDLSLNRYKEVVHEAAEHRPPKEIIAELKALEQEIADGLDELEA 511 >gi|327540217|gb|EGF26806.1| type I restriction-modification system, M subunit [Rhodopirellula baltica WH47] Length = 497 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 89/458 (19%), Positives = 165/458 (36%), Gaps = 66/458 (14%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKV--I--LP-FTLLRRLECALEPTRSAVREKYLAFGG 64 S++ I + + +G I L L+ L+ R E Sbjct: 2 SISTTIKSIQDVMRK--DAGTYGDAQRIEQLAWMFFLKILDD-----RETEEELLEDDFK 54 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 S I + + + +L L++ + + N +A+ F Sbjct: 55 SPIPNKYRWRNWATDEEGMTGDTLLNFVDNGLLPALKN-LTVSAANPRAVVIRSAFDDAN 113 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 ++ L+ ++ + I+ + V ++YE +++ S + A +F TPR V Sbjct: 114 QYMKNGTLMRQVINKINEIDFNNSK-DRHVFGDVYEQILKDLQSAGN--AGEFYTPRAVT 170 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPI 239 + +P + + DP CGTGGFLT ++++ D H+ Sbjct: 171 QFMVQ----------QTAPQLGERVLDPACGTGGFLTAVIDYIRDEAKQVKSPTHEEELQ 220 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCL 296 HG E + H +C +L+ ++ I+ +TLS +D R + Sbjct: 221 ASIHGVEKKHLPHILCTTNLLLHGIDV------PSQIRHDNTLSRPLRDYGPKDRVDVIV 274 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPFG ++D +E R + +D LFL+ + + L+ GGR Sbjct: 275 TNPPFGG---MEEDGIELNFPKAFQTR------ETAD---LFLVLIMHLLKE----GGRG 318 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNR- 413 AIVL LF + I+ LL+ + IV LP +F + T I T L + Sbjct: 319 AIVLPDGTLFGEGVK---TRIKERLLDECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGP 374 Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 ++ + + + K + I ++ Sbjct: 375 TGKKDCTKDIWFYD--HPYPPGAKSYNKTKPIRIEEFD 410 >gi|317405483|gb|EFV85792.1| type I restriction modification enzyme M subunit [Achromobacter xylosoxidans C54] Length = 492 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 103/546 (18%), Positives = 176/546 (32%), Gaps = 80/546 (14%) Query: 10 SLANFIWKNAEDLWGDF----KH---TDFGKVILPFTLLRRLECA---LEPTRSAV---R 56 SLA I + + D + I L+ + E T+S Sbjct: 2 SLATLIKAIQDIMRKDVGVDGDAQRISQ----ICWLLFLKIFDDKEQEWELTQSNYRSPL 57 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIF 115 + + D E F N + SL L + + I S Sbjct: 58 QSRFRWSDWAKDPEGMTGEELIDFVNNDLFPSLKQLATKAGVSAQGRVIGSV-------- 109 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 F ++ LL ++ + + ++IYE ++ S + A Sbjct: 110 ----FEDAYNYMKSGTLLRQVINTIEEDVDFNSSSDRHLFNDIYEKILADLQSAGN--AG 163 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSH 233 ++ TPR V +L P + ++ DP CGTGGFLT A+ H+ Sbjct: 164 EYYTPRAVTQFMVDIL----------DPKLGESILDPACGTGGFLTCAIEHLKKQVKTPD 213 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGK 290 HG E +P H + + M++ ++ I+ +TLS KD Sbjct: 214 DNRLLQENIHGVEKKPLPHMLALTNMMLHGIDV------PTRIRHDNTLSRPFKDYGPRD 267 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 R ++NPPFG ++D +EK R + +D LF+ + L Sbjct: 268 RVDIIITNPPFGG---MEEDGIEKNFLAKHQTR------ETAD---LFMALIMYLLRHDT 315 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GRAA+VL LF + ++R LLE + +V LP +F T+I T + Sbjct: 316 ---GRAAVVLPDGFLFGEGVK---TTLKRELLEEFNLHTVVRLPKGVFAPYTSIVTNILF 369 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD---IYVSRENGKFSR 466 + V K I + + R+ + + Sbjct: 370 FEKGGPTK---DVWFFEHPYPAGYKSYSRSKPLTIEEFDLEKTWWGGPQRKGRKTTEHAW 426 Query: 467 MLDYRTFGYRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + R + P ++ L E R+L Q+ ++L + Sbjct: 427 KVSAKDLAARNYNLDCKNPHEVAVELGDPDELMAEYQDITRQLQAAQQALKTELLAALKA 486 Query: 525 QIYPYG 530 G Sbjct: 487 TSGEAG 492 >gi|227820720|ref|YP_002824690.1| N-6 DNA methylase [Sinorhizobium fredii NGR234] gi|227339719|gb|ACP23937.1| N-6 DNA methylase [Sinorhizobium fredii NGR234] Length = 511 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 96/546 (17%), Positives = 180/546 (32%), Gaps = 84/546 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 +A ++ +W+ L + + + T L L+ E R + Sbjct: 2 NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMMAERNRES------GSLPET 53 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLG-----------------STNTRNNLESYIAS--F 107 + E V+ G + +L TLG T + + Y+ + Sbjct: 54 MRWEDLVQANGLAKLELYRRTLVTLGTVSTRLGKDDALVLPPGDNATPDERKRYVDARPL 113 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 D + I F + + + L + ++ + ++YE L+++ Sbjct: 114 PDMVQEI-----FDNASTFIREPQNLTTLVTAIDELDWFSE--ERDQFGDLYEGLLQKNA 166 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 E GA + TPR ++ + L+ P + DP GTGGFL A +++ Sbjct: 167 EETKRGAGQYFTPRVLIRVLVRLM----------QPQPGEVIQDPAGGTGGFLIAADHYM 216 Query: 228 ADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + HG E P T + + + + ++SD ++ G Sbjct: 217 RARTDNYFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD-------HVDLG 269 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 TLS R + L+NPPFG +S + F+ Sbjct: 270 DTLSDKGKGLGRANLILTNPPFGPAGGAPTRDDLSV------------TATVSSYQLPFV 317 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 H L+ GGRAAIV+ + LF G ++R+ +++ + I+ LPT +F+ Sbjct: 318 EHCIRALKP----GGRAAIVVPDNVLFEDGRG---RQLRQMMMDWCDLHTILRLPTGIFY 370 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + T + L+ KTE K I DL + G K + + + + Sbjct: 371 AQGVKTNVIFLTRGKTETGNTKATWIY--DLRAQMPKFG-KTTPLTEAHFEGFEKAFGT- 426 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + + R + R ++ D +A L + + Sbjct: 427 --SPYGKERVKDEGEVGRWREFRREEIAARGDNLDIAWLREADDEAEDGLTEPEDIAAAI 484 Query: 520 KPMMQQ 525 +Q Sbjct: 485 LGHLQA 490 >gi|322515486|ref|ZP_08068472.1| type I restriction-modification system DNA-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322118453|gb|EFX90704.1| type I restriction-modification system DNA-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 552 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 86/590 (14%), Positives = 212/590 (35%), Gaps = 86/590 (14%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLL-RRLECALE------- 49 MTE F L + + A G+ +F I+ L + L Sbjct: 1 MTEQLFQQKTKELIDSLKAICANYGLGN-DGNEFK--IITQVFLYKFLNDKFAFEIKQID 57 Query: 50 ---PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 + + ++ L + + +F +++ + ++N+ ++ Sbjct: 58 PSLAKSESWEQALSKMPAADFKLLTMRRNGDTAFLQPNQF----ISHLFNQSNIANFANL 113 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-------------- 152 F + I ++ + + G + S P Sbjct: 114 FDETLMGIATHTKNANIFSVKTEGGAKINLFDGVSQYIADPSKRDAFCRAVINKLVEFSF 173 Query: 153 --------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + I+E+LI+ + + ++ TP V + A+L+ + ++ Sbjct: 174 EHIFNQKFDFYATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILVPENVRGQLQN-- 231 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + YDP+ G+G L + + + + + + Q++ ++ + L Sbjct: 232 --VSCYDPSAGSGTLLMNIAHAIGE--------KKCIIYTQDISQKSSNLLRL-----NL 276 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + N+ QG+T++ ++F Y +SNPPF + + ++ + Sbjct: 277 ILNNLVASIPNVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREELAMPAHKD- 335 Query: 321 LGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 RF G+P + LF+ H+ + L+ G+AA+VL + F Sbjct: 336 --RFFAGVPNVPKAKKEKMAIYQLFVQHIIHSLKAD----GKAAVVLPTG--FITAQSGI 387 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 + +IR +L+ ++ +V++P+++F T + L + V LI+A++L Sbjct: 388 DKKIREFLVNEKMLAGVVSMPSNIFATTGTNVSILFLDR----ANKENVVLIDASNLGEK 443 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I+ ++ +++ ++ ++I+D++ ++ FS ++ Y + + +D Sbjct: 444 IKEGKNQKTVLSAEEEQRIIDVFNQKKAEDDFSVVVSYADIAAKNHSLSAGQYFDVKIDH 503 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 + E + + + + K + QI F +++++ Sbjct: 504 IDITAAEFEQKMADFQQNLTALFAES-KVLESQIQQQMATLKFNAQAVEN 552 >gi|253998801|ref|YP_003050864.1| adenine-specific DNA-methyltransferase [Methylovorus sp. SIP3-4] gi|253985480|gb|ACT50337.1| Site-specific DNA-methyltransferase (adenine-specific) [Methylovorus sp. SIP3-4] Length = 497 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 164/471 (34%), Gaps = 71/471 (15%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ + LE + ++L + D E F N + TL Sbjct: 34 MFFLKIYDDREAEIELLEDDYKSPLPEHLRWRHWAADPEGMTGDELSDFVNLQLF--PTL 91 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + + + + + F ++ L+ ++ I +T Sbjct: 92 KTKLI-------LIGPTGERAKVIRNV-FEDAYNYMKSGTLMRQVINKICEINF-NNTQD 142 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 +IYE +++ S + A +F TPR V + P + ++ D Sbjct: 143 RHTFGSIYEQILKDLQSAGN--AGEFYTPRAVTKFIVDRV----------DPQLAESVLD 190 Query: 212 PTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 P CGTGGFL ++H + + + + HG E + H +C M++ ++ Sbjct: 191 PACGTGGFLACTIDHKREKYVKNAADEALLVASIHGVEKKALPHMLCTTNMILHGID--- 247 Query: 269 RRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 I+ + LS KD R H ++NPPFG ++G +F Sbjct: 248 ---TPTQIEHDNMLSRRAYKDYGDADRVHVIVTNPPFGGME-----------EDGVENQF 293 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + + + LF+ + L+ GRAA+VL LF + +++ LLE Sbjct: 294 PATL-RTRETADLFMALVVKLLKPH----GRAAVVLPDGFLFGEGMK---TRLKQMLLEQ 345 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEER--RGKVQLINATDLWTSIRNEGKK 440 + IV LP +F + T I T + + + E +V + K Sbjct: 346 CHLHTIVRLPNGVFNPY-TGIKTNILFFTKKPEAEWPATKEVWFYE--HPYPEGVTSYNK 402 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 R + ++ + +G +R + ++ + ++ LD Sbjct: 403 TRPMQFEEFATECAWWGDEADGFRARKETPQA---WKVSLEDIAARNYNLD 450 >gi|229490946|ref|ZP_04384780.1| N-6 DNA methylase [Rhodococcus erythropolis SK121] gi|229322153|gb|EEN87940.1| N-6 DNA methylase [Rhodococcus erythropolis SK121] Length = 515 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 71/429 (16%), Positives = 153/429 (35%), Gaps = 71/429 (16%) Query: 38 FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 ++RL+ L ++ G I+ F + ++ ST+ + + Sbjct: 35 LLFIKRLDDQQTLALNKANRL-------GRPIEGNPFPVGTDDDGRDYADLRWSTIKNMH 87 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-------GLLYKICKNFSGIELHPD 148 + +A+ D S+ ++ A GLL K+ G+ + Sbjct: 88 PDEAFDVVGQRVFPFIRAM--RSDDSTYAHHMKDARLSIPSPGLLMKVIDLLDGVPMEN- 144 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++YE+++ + + F TPR ++ + ++ +P Sbjct: 145 ---LDTKGDVYEYMLSKIA--SAGQNGQFRTPRHIIQMMVEMM----------APQPGDR 189 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261 + DP GT GFL A H+ S + + HG + + + M++ Sbjct: 190 IVDPASGTCGFLVAASEHMRAHHSEEISSGATREQYHHDMFHGFDFDNTMLRIGSMNMML 249 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + +++ +L++ + L+NPPF + + A + + Sbjct: 250 HGIE-------NPDVRYRDSLAEANTADAGAYSMILANPPFAGSLDYENTAKDLQ----- 297 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + K +LF+ L+ GGRAA+++ LF + + +R+ Sbjct: 298 ------QIVKTKKTELLFMALFLRLLKP----GGRAAVIVPDGVLF--GSSTAHKTLRKM 345 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E+ ++A+V LP+ F ++T + + + V T + Sbjct: 346 LVEDHKLDAVVKLPSGAFKPYAGVSTAILFFTRTDSG-GTDNVWFYEVTADGY---SLDD 401 Query: 440 KRRIINDDQ 448 KR + DD+ Sbjct: 402 KRTPLLDDE 410 >gi|330999088|ref|ZP_08322811.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859] gi|329575609|gb|EGG57143.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859] Length = 473 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 91/543 (16%), Positives = 178/543 (32%), Gaps = 95/543 (17%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHT-DFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + SL +WK A+ + G F I T L L + ++ + Sbjct: 1 MEVTETSLVKKVWKLADVMAG---AGIGFTDYITQLTYLLFL---------KMDQENVDL 48 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDF 120 L + L Y I + + F Sbjct: 49 MDEESK-------------IPEGLRWENLRKETGEDQLSLYERILRTLSKQEGLIGTI-F 94 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + ++E L K+ + + V +YE ++++ G + GA + TP Sbjct: 95 TKAQNKIESPVYLSKLISFIDQEQWL--ILKGDVKGALYEAILQKNGQDKKSGAGQYFTP 152 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---IP 237 R ++ ++ SP + T+ DP CGT GFL A N++ Sbjct: 153 RPLIDAIVDVI----------SPKIGETVIDPACGTAGFLLSAFNYMKGQSMDTDLNIKL 202 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G ++ P + + + + + I +L K+ K++ L+ Sbjct: 203 RNSSLKGYDITPLVVTLGSMNLYLHGVGLNSSP-----IVCQDSLIKE--PDKKYDIVLA 255 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG + + + + + + + FL H+ + L+ GGRA Sbjct: 256 NPPFGARAAGSVEIHRSDF-----------IKETKNNQINFLQHIMSLLKS----GGRAG 300 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +VL + LF SGE E+R+ LL + + I+ LPT +F+ + T + + + Sbjct: 301 VVLPDNVLFES---SGE-EVRKKLLTDFNLHTILRLPTGIFYANGVQTNVLFFEKKGKTK 356 Query: 418 RRGKVQLINATDLWTSIRNEGKKR----RIINDDQRRQILDIYVSRENGKFSRMLD---Y 470 +LW G K + + + + S + K + Sbjct: 357 -----------ELWVYDYRSGIKHTLATNPLKREDLDDFVSCFSSEDRNKREETYNKDTN 405 Query: 471 RTFGYRRIKVLRPLR-------MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +R+ + L +S+I + + KL + D + + Sbjct: 406 PNGRWRKFSIEEILEREGTNLDLSWIKNDSDALEEMKIPELLKLLTEKKQNISDAVTELQ 465 Query: 524 QQI 526 +++ Sbjct: 466 KEL 468 >gi|153838493|ref|ZP_01991160.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus AQ3810] gi|149748116|gb|EDM58975.1| type I restriction-modification system, M subunit [Vibrio parahaemolyticus AQ3810] Length = 494 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 94/521 (18%), Positives = 176/521 (33%), Gaps = 94/521 (18%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ L+ E + +D E ++ + T + Sbjct: 34 LFLKFLDD-YESEKEDEAVLSGKDYQPVLDEEHRWSNWACPKNADGNLDINKV---RTGD 89 Query: 99 NLESYIA-----------------------SFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135 +L Y+ SF+ AIF+ D ++ L + Sbjct: 90 DLTDYVNNELFPYLKGFANSAITGSGVDPKSFAYKIGAIFQYLD-----NKVASGHTLRE 144 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + + +S +YE L++ G + A +F TPR VV + Sbjct: 145 VLDIIDTLNFQ-SSDEMFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMIKAI---- 198 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPE 250 P +T+YD G+ GFL +A +H+ G E Sbjct: 199 ------DPQAGQTIYDAAAGSCGFLVEAFDHLKAKKSALSTEQWDFIQRDTFFGFEKTSL 252 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEK 307 + + + M++ +E S N+ +G+TL++ D+ R+ L+NPPFG K ++ Sbjct: 253 AYVMGMMNMILHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKE 305 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 P ++ +LF+ H L+ GG+AA+V+ LF Sbjct: 306 QIQQNF---------------PIKANATELLFMQHFMKTLKS----GGKAAVVVPEGVLF 346 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI 425 + S ++++ LLEN + I++LP +F + + T + V Sbjct: 347 --QTNSAFKQVKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSDVWYY 401 Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPL 484 K + I DD ++ +++Y SRE + S + + P Sbjct: 402 ECEPEQKLT-----KNKPITDDHLKEFVELYSSRETTERSWTVSANKLAEDYDLSAKNPA 456 Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + D LA + R L +I + ++ Sbjct: 457 K---QKDAEHLAPSDILKQIRTKEKLVSGLLDEIEDLLAEK 494 >gi|148654895|ref|YP_001275100.1| N-6 DNA methylase [Roseiflexus sp. RS-1] gi|148567005|gb|ABQ89150.1| N-6 DNA methylase [Roseiflexus sp. RS-1] Length = 534 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 169/466 (36%), Gaps = 71/466 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLECALEPTRSA 54 M G +L +W+ + L G + + + L+ + E + A Sbjct: 1 MQLSLGLNETLGTDLWRACDILRRDNNVGGVM---QYTEHLAWLLFLKFFDQ--EEKKRA 55 Query: 55 VR-----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 E Y+ ++ +++ +++S L L + + S Sbjct: 56 QEAAFRGETYIPVLPPDLAWDAWAGPEALQKWDSSRGQLVAFVRGRLLPGL-ASLNG-SP 113 Query: 110 NAKAIFEDFDFSSTIARLEKAGL--------LYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A I F S + + L + + I+ D ++ YE Sbjct: 114 LANTIARLFSDESIGDQTVVRNVPVCASDYNLKDVLTIINAIDFERDDH-FFTITRFYED 172 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ R G E ++ A +F TPR ++ ++ P + T+YDP CG+ GFL Sbjct: 173 LLARMGQE-NQIAGEFHTPRPIIRFMVEVI----------DPQIGETVYDPACGSAGFLA 221 Query: 222 DAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 A + + +G+E + + +++ + + NI + Sbjct: 222 QAHLWMEKNAHTLEDLETLQQRTFYGREKKALAALLGTMNLILHGV-------TTPNIVR 274 Query: 279 GSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +TL + + TG +RF L+NPPFG K + F + + Sbjct: 275 ANTLEESVKTGVAERFDIVLTNPPFGGKEGRHIQQN-----------FPV---PGNATEL 320 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LFL H+ KL+ N RAA+V+ LF A +E++R LL++ + A+++LP Sbjct: 321 LFLQHIIKKLKPTANA--RAAVVVPEGTLFRSGA---FAEVKRMLLDDFHLFAVISLPPG 375 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 F +++ T L + R N T + G K+ Sbjct: 376 AFAPYSDVKTALLFFRRTEGSHIRNP-LARNETWYYELPLPAGLKK 420 >gi|319946655|ref|ZP_08020889.1| type I restriction-modification system DNA-methyltransferase [Streptococcus australis ATCC 700641] gi|319746703|gb|EFV98962.1| type I restriction-modification system DNA-methyltransferase [Streptococcus australis ATCC 700641] Length = 457 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 85/467 (18%), Positives = 187/467 (40%), Gaps = 73/467 (15%) Query: 27 KHTDFGKVILPFTLL-RRLEC-------ALEP--TRSAVREKYLA--------------- 61 + ++ +L + L + L L+ T + Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFLYQAKVLDESNTYENLLAMSEEDYDWLLEDIGTSTAW 85 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + +FY T E +L+ + NN + + D A +F++ + Sbjct: 86 LKPDQLIETLHRQQNETTFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLIT 142 Query: 122 STIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFM 178 TI+ K + K I + I+ S ++E++I+ + + ++ Sbjct: 143 DTISDSSKRNEVAKSIINLLTRIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYY 202 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V + +L+ D +YDP+ G+G L + + + Sbjct: 203 TPHSVAKIIADILVGDDK-------PQNVRIYDPSAGSGTLLMNLASRI--------GVD 247 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + Q++ ++ + L + + NI QG+T++ + ++ Y +SN Sbjct: 248 KTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTITANRHP-EKMDYIVSN 301 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPN 351 PPF + + +D VE + E RF G+PK S M LF+ H+ L+ Sbjct: 302 PPFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD-- 357 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+AA+VL + F + IR+ L++N ++ +V++P+++F T + + Sbjct: 358 --GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFID 413 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ Sbjct: 414 KK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIK 456 >gi|241668320|ref|ZP_04755898.1| type I restriction-modification system, subunit M (methyltransferase) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876853|ref|ZP_05249563.1| type I restriction-modification system protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842874|gb|EET21288.1| type I restriction-modification system protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 481 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 99/498 (19%), Positives = 174/498 (34%), Gaps = 65/498 (13%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E+Y+ ++ G + Sbjct: 32 LFLKFLNDYENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKGADGKLDVINADSGDDLLE 91 Query: 95 NTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ SF +N K + F R+ L + + Sbjct: 92 FVNKELFPYLKSFKSIDENVKTLKYKIGAVFEYIDNRVASGHTLRDVINEIDELNF-NKK 150 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 +S IYE+L++ GS+ + +F TPR +V ++ +P +T+ Sbjct: 151 EDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQTV 199 Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLES 266 YDP GT GFL DA H+ + + G+E P ++ + V M++ + Sbjct: 200 YDPAAGTCGFLIDAYEHMYSKELSTTQLAFLNEETFFGKEKTPLSYVMGVMNMILHGI-- 257 Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 258 -----TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF---------- 302 Query: 324 FGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 P S+ +LFL H+ L+ GGR +V+ LF + + +++ LL Sbjct: 303 -----PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKELL 351 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 EN + IV+LP +F + + T + E + T + K Sbjct: 352 ENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEITPPYKLT-----KN 403 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 + I + + L+I+ SR+ + S +++ I P ++ I K+ L + Sbjct: 404 KPIQFEHFAEFLEIWQSRKLTENSWIINVADIKDYDISAKNPNKIETIEHKSPLELVNEI 463 Query: 502 ITWRKLSPLHQSFWLDIL 519 + IL Sbjct: 464 KQNTDEIDKLINEIETIL 481 >gi|326778616|ref|ZP_08237881.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] gi|326658949|gb|EGE43795.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] Length = 867 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 72/429 (16%), Positives = 147/429 (34%), Gaps = 70/429 (16%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 I ++RL+ + + + + E ++ +F + + Sbjct: 32 ITYLLFIKRLDEI-QIRKDNRASRTAKPDPDPLFAEDQQELRWQNFKACDPEVMYRIVEQ 90 Query: 95 NTRNNLESYIAS---FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 L + +S + + F + LL K+ + I + Sbjct: 91 GVFPYLRAMGGDGSTYSHHMRD--ARF-------TIPGPNLLAKVVELLDSIAME----S 137 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 +IYE+L+ + + F TPR ++ L + P + D Sbjct: 138 SDTAGDIYEYLLAKIATSG--RNGQFRTPRHLIRLMVEM----------TQPKPDDEVCD 185 Query: 212 PTCGTGGFLTDAMNHVADCGSHH--KIPPILVP-----HGQELEPETHAVCVAGMLIRRL 264 P CGT GFL + ++V + + HG + + + ML+ + Sbjct: 186 PACGTAGFLVQSASYVKREHAKALLDVEQQAHFNASMFHGFDFDSTMLRIGSMNMLLHGI 245 Query: 265 ESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 E + +I+ +L + +R+ L+NPPF + + A + Sbjct: 246 E-------NPDIRYRDSLVESSAGEAERYSLILANPPFAGSLDYESTAAD---------- 288 Query: 324 FGPGLP--KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 LP K +LFL L+ GGRAA+++ LF + E+RR L Sbjct: 289 ---LLPVVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSTKAHKELRRTL 339 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 +E+ ++ +V LP+ +F ++T + + + + V + + + Sbjct: 340 VEDHKLDGVVKLPSGVFKPYAGVSTAILLFTRTDSG-GTDNVWFYDVQADG---FSLDDR 395 Query: 441 RRIINDDQR 449 R + + R Sbjct: 396 RNPLLPEDR 404 >gi|254831874|ref|ZP_05236529.1| N-6 DNA methylase [Listeria monocytogenes 10403S] Length = 539 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 89/555 (16%), Positives = 208/555 (37%), Gaps = 66/555 (11%) Query: 1 MTEFTGSA-ASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 M E + L + + A G + ++ V F + L + Sbjct: 1 MNESYTTIVKQLVDDLKAISANAGLGG-EAGEYNLVTQSFL-YKFLNDKFLFEIKKLHPN 58 Query: 59 YLAFGGSNIDLESFVKVAGYSF-----YNTSEYSLSTLG----STNTRNNLESYIASFSD 109 Y +++ + + + + + + + L + + + + Sbjct: 59 YDYEKLASLSEDEYTMLLDFELGTNAAHLHPRHLIEDLYKHQNEDDFAKTFDDTLNDIAV 118 Query: 110 NAKAIFE-----DFDFSSTIARLEK---------AGLLYKICKNFS--GIELHPDTVPDR 153 +IF + D RL + +I + + Sbjct: 119 ENNSIFSVHTAGNSDIRLFEERLINDIVRDSSMRNDVAKQIIAKLALVKFDEVIFDQGFD 178 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 S I+E++I+ + + ++ TP V + + +L+ D+ YDP+ Sbjct: 179 FFSTIFEYMIKDYNKDGGGKYAEYYTPHSVAKIMSEILIGDDE-------PKSVKAYDPS 231 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G L + + + + + Q++ ++ + +L L + Sbjct: 232 AGSGTLLMNVASKI--------GTDKVSIYSQDISQKS-----SNLLRLNLILNNLSHSI 278 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 NI QG+T+ ++ K+ Y +SNPPF + + ++ + + RF G+P I + Sbjct: 279 NNIVQGNTIIENRHADKKMDYIVSNPPFKLDFSEWREQITTLPE--FTERFFAGVPNIPN 336 Query: 334 GS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + +LF+ H+ L N G+AA+V+ + F E +IR+ L++N Sbjct: 337 SAKDKMAIYLLFIQHIIYSL----NNTGKAAVVVPTG--FITAQSGIEKKIRKHLIDNRW 390 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 ++ +V++P+++F T + + + KV L++A+ L T +++ ++ +++ Sbjct: 391 LKGVVSMPSNIFATTGTNVSVIFIDKTNNTDDA-KVVLVDASKLGTKVKDGKSQKTLLSS 449 Query: 447 DQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + +QI+ + +E FS + Y ++ + ++ L + E + + Sbjct: 450 EDEKQIIQAFQMQEARDDFSVTVTYNEIKEKKYSLSASQYFDVKIEYVELTQEEFNNQMK 509 Query: 506 KLSPLHQSFWLDILK 520 K QS +L+ K Sbjct: 510 KFQCTLQSLFLEDNK 524 >gi|118497742|ref|YP_898792.1| type I restriction-modification system, subunit M (methyltransferase) [Francisella tularensis subsp. novicida U112] gi|194323713|ref|ZP_03057489.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida FTE] gi|118423648|gb|ABK90038.1| type I restriction-modification system, subunit M (methyltransferase) [Francisella novicida U112] gi|194322077|gb|EDX19559.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida FTE] Length = 482 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E+Y+ ++ + Sbjct: 32 LFLKFLNDYENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKDADGKLDVINADTGDDLLE 91 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 92 FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRVASGHTLRDVINEIDELNF-N 148 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S +YE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 149 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 402 KNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVAD 434 >gi|208779806|ref|ZP_03247150.1| N-6 DNA Methylase family protein [Francisella novicida FTG] gi|208744261|gb|EDZ90561.1| N-6 DNA Methylase family protein [Francisella novicida FTG] Length = 461 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E+Y+ ++ + Sbjct: 11 LFLKFLNDYENEKSLETELIGEEYIFVLDEKYRWNTWAAPKDADGKLDVINADTGDDLLE 70 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 71 FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 127 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S +YE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 128 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 176 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 177 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 236 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 237 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 281 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 282 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 328 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 329 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 380 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 381 KNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVAD 413 >gi|254517361|ref|ZP_05129418.1| type I restriction-modification system, M subunit [gamma proteobacterium NOR5-3] gi|219674199|gb|EED30568.1| type I restriction-modification system, M subunit [gamma proteobacterium NOR5-3] Length = 489 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 95/516 (18%), Positives = 177/516 (34%), Gaps = 77/516 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLG 92 L+ L+ R A E S I + G + ++ L Sbjct: 34 MIFLKILDD-----REAELELIEDDFVSPIPEHLRWRNWAANPEGQTGEALLDFVNGVLF 88 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + + + ++I F + ++ L+ ++ + I+ +T Sbjct: 89 PKLKELQAQGAVGKRAQVVRSI-----FDGALNFMKSGTLMRQVINKINEIDF-NNTENR 142 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +IYE +++ S + A +F TPR V L L +P + ++DP Sbjct: 143 HTFGDIYEKILKDLQSAGN--AGEFYTPRAVTRLIIDRL----------NPQLDEIVFDP 190 Query: 213 TCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 CGTGGFL+ A++H S + G E + +C+ M++ ++ Sbjct: 191 ACGTGGFLSCAIDHKQQFVRTSADRETLARTLRGVEKKSMPFNLCITNMILHGID----- 245 Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 I +TL+ KD R H +NPPFG ++D +E R Sbjct: 246 -TPTGIAHDNTLARPFKDYGDKDRVHVIATNPPFGG---MEEDGIENNFPAQYRTR---- 297 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +D LF+ + L + GRA ++L LF S I++ L+E + Sbjct: 298 --ETAD---LFMALIIKLLRV----NGRAGVILPDGFLFGEGTKSS---IKKDLIETCNL 345 Query: 388 EAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKR 441 I+ LP +F + T I T + + + E W EG K Sbjct: 346 HTIIRLPGGVFNPY-TGIKTNILFFTKGQPTEDI---------WFWEQPYPEGVVNYNKG 395 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 R + ++ + D + E KF + ++ + LD+ EA+ Sbjct: 396 RPMQFEEFDALRDWWGD-EATKFRTRTENPH--AWKVTADHVATRGYNLDEKNPHVAEAE 452 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 I + + ++ + ++ K Sbjct: 453 IHDPDVLLAAYAQSQREVQGLRDRLKAILSDALGKK 488 >gi|313681903|ref|YP_004059641.1| site-specific DNA-methyltransferase (adenine-specific) [Sulfuricurvum kujiense DSM 16994] gi|313154763|gb|ADR33441.1| Site-specific DNA-methyltransferase (adenine-specific) [Sulfuricurvum kujiense DSM 16994] Length = 478 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 90/450 (20%), Positives = 166/450 (36%), Gaps = 79/450 (17%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ + L+ + L + D E A F NT + +L Sbjct: 35 MIFLKIFDDKDIEMELLDDNYVSPIPAELQWRNWASDDEGLTGEALLVFINTELFPTLQK 94 Query: 91 L--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L G+TN R L + +FE + ++ ++ ++ + + Sbjct: 95 LALGTTNKRAIL----------VREVFEGNN-----NYMKSGTIIRQVINKLNEVNF-NS 138 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + +IYE +++ + + + +F TPR + + T + P + Sbjct: 139 SEDRHMFGDIYETILKEL--QSAGDSGEFYTPRAITNFITDRV----------DPKLGEI 186 Query: 209 LYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 ++DP CGTGGFLT A+ H+ ++ G EL+P H + + +++ +E Sbjct: 187 VFDPACGTGGFLTSAIEHIRQKEVKNIDDRLTLQKSIKGVELKPLPHMLALTNLVLHDIE 246 Query: 266 SDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 NI+ LSK+L R L+NPPFG + Sbjct: 247 V-------PNIEYDDALSKELSSITQKDRVDVILANPPFGGNVTDGMEM----------- 288 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 P + + + + LFL+ + L+ GGRA IVL L ++ IR+ LL Sbjct: 289 -NFPMIYRTKESADLFLILIIQYLKD----GGRAGIVLPDGSL---TGEGVKARIRQKLL 340 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV--QLINATDLWTSIRNEGK 439 E+ + I+ LP +F ++AT L + + + QL + Sbjct: 341 EDCNLHTIIRLPNSVFQPYASVATNLLFFTKGEPTKEIWYYEHQLPVGQKAY-------N 393 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLD 469 K I + I + +R + + +D Sbjct: 394 KTNPIQLKEFDPIKAWWDNRLESEQAWKVD 423 >gi|332678455|gb|AEE87584.1| type I restriction-modification system, subunit M (methyltransferase) [Francisella cf. novicida Fx1] Length = 461 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E+Y+ ++ + Sbjct: 11 LFLKFLNDYENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKDADGKLDVINADTGDDLLE 70 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 71 FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 127 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S +YE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 128 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 176 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 177 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 236 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 237 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 281 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 282 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 328 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 329 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 380 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 381 KNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVAD 413 >gi|296273009|ref|YP_003655640.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299] gi|296097183|gb|ADG93133.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299] Length = 483 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 89/500 (17%), Positives = 180/500 (36%), Gaps = 66/500 (13%) Query: 39 TLLRRLECALEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 LR L+ LE ++ + E+Y S+ + + Sbjct: 33 MFLRYLDE-LENEKADIAVLKDEEYTYILDEEFRWNSWAMPKVDGKIDHHKARNGIDLVQ 91 Query: 95 NTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+A F +++A+ I FS +++ L +I ++ + Sbjct: 92 FVDGKLFPYLAKFKQTAEHAQTIEYKIGEIFSELKNKIQSGYNLREIL-AYADELPFRSS 150 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 +S++YE I+ G + TPR ++ ++ P + + Sbjct: 151 KDKHELSHLYETKIKNMG-NAGRNGGQYYTPRPLIRAMIDVI----------DPQIGEKV 199 Query: 210 YDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 YD G+ GFL +A +++ + + KI +G+E + + + + M++ +E Sbjct: 200 YDGAVGSAGFLCEAYDYMYERMNKNVDNLKILQERTFYGKEKKNLAYVIGIMNMILHGIE 259 Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + NI+ +TL + D+ R+H L+NPPFG K K+ Sbjct: 260 -------APNIKHTNTLGELIRDIQEKDRYHVILANPPFGGKERKEVQQNFDI------- 305 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 K + + LFL H L+ GGRAAIV+ ++ L N S +R+ LL Sbjct: 306 -------KTGETAFLFLQHFIKSLK----AGGRAAIVIKNTILSNSDNASI--ALRKHLL 352 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 E+ + I+ +P F + T + + + ++ L ++ K Sbjct: 353 ESCNLHTILDMPAGTFTGAGVKTVVLFFTKGEATKKIWYYSLNPGRNMG--------KTN 404 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 +ND + ++ + + S L+ ++ F ++ L + + Sbjct: 405 PLNDKDMLDFKTLQKTKADSENSWTLNISDI--DETTYDLSIKNPFTPEEAELRTPKKIL 462 Query: 503 TWRKLSPLHQSFWLDILKPM 522 + L +K + Sbjct: 463 EDIVNLDKETNEILASIKEL 482 >gi|86141513|ref|ZP_01060059.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Leeuwenhoekiella blandensis MED217] gi|85832072|gb|EAQ50527.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Leeuwenhoekiella blandensis MED217] Length = 516 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 77/440 (17%), Positives = 162/440 (36%), Gaps = 76/440 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96 ++ L+ TR+ K L + F + +L + Sbjct: 35 LIFIKDLDET--ETRNERMAKRLDKEFT-----PIFGPDQQDF----RWKNLKEIDVQAR 83 Query: 97 RNNLESYIASFSDNAKAI-FEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVP 151 + + + +++ E FS+ + + KA L ++ + +++ Sbjct: 84 HSIFTNSVDGIFPFIRSLGSEKSLFSTYMKDASFGINKAATLDQVMEKLERLDMSNQ--- 140 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + +IYE+L+ + E A F TPR ++ L ++ P + T+ D Sbjct: 141 -DIKGDIYEYLLSKL--EGGGTAGQFRTPRHIIKLMVEMM----------QPKLEDTICD 187 Query: 212 PTCGTGGFLTDAMNH------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 P+ GT GFL A + + + + + + +G E + + + + +E Sbjct: 188 PSAGTAGFLVAAKEYIDKHYDITELDRNKEHINKHMFNGTEFDATMLRIASMNLFLHGVE 247 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 NI +SKD + L+NPPF +K+ A + Sbjct: 248 -------EPNIVDVDAVSKDNEVSDAYTLVLANPPFKGTIDKESIAPGLSN--------- 291 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + K + +LFL + +L+ GGRAA ++ LF +G IR ++ N Sbjct: 292 --VTKTTKTELLFLALMLRQLKK----GGRAAAIVPDGVLF--GSGKAFKSIRSEIVNNH 343 Query: 386 LIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 +EA+++LP+ +F + ++T + I + V + + ++ KR + Sbjct: 344 KLEAVISLPSGVFKPYS-GVSTAILIFTKT-DNGGTDHVWFYD---MKADGKSLDDKRNL 398 Query: 444 INDDQRRQILDIYVSRENGK 463 + D+ + + + K Sbjct: 399 LVDE------EAFNNFAFSK 412 >gi|306825748|ref|ZP_07459087.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432109|gb|EFM35086.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 534 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 94/543 (17%), Positives = 211/543 (38%), Gaps = 75/543 (13%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGG----SNIDLESFVKVAGYSF- 80 + ++ +L + L + L ++ V ++ + + D + ++ G S Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFL-YQAKVLDESNTYENLLAMNEEDYDWLLEDIGTSTA 84 Query: 81 YNTSEYSLSTLGSTNTR----NNLESYIASFSDNAKAIF----------EDFDFSSTIAR 126 + S+ + TL E+ + + + IF FD Sbjct: 85 WLKSDQLIETLHRQQNEPTFYETFENTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDT 144 Query: 127 LEK----AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + I + ++ D S ++E++I+ + + ++ TP Sbjct: 145 ISDSSKRNEVAKAIINLLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTP 204 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V + +L+ D +YDP+ G+G L + + + Sbjct: 205 HSVAKIIADILVGHDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKT 249 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 + Q++ ++ + L + + NI QG+T+ + ++ Y +SNPP Sbjct: 250 TVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPP 303 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGG 353 F + + +D VE + E RF G+PK S M LF+ H+ L+ Sbjct: 304 FKLDFSEWRDRVEILPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD---- 357 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G+AA+VL + F + IR+ L++N ++ +V++P+++F T + + + Sbjct: 358 GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK 415 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ +E + FS + Y Sbjct: 416 ----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYED 471 Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQIYP 528 + + +D + E D KLS L Q + + + +Q+ Sbjct: 472 IKEKNYSLSAGQYFDIKIDYVDITAEEFDAKMTAFQNKLSDLFQQSH-ALEQEIEEQMKG 530 Query: 529 YGW 531 + Sbjct: 531 IKY 533 >gi|254227051|ref|ZP_04920609.1| N-6 DNA Methylase family [Vibrio cholerae V51] gi|125620426|gb|EAZ48802.1| N-6 DNA Methylase family [Vibrio cholerae V51] Length = 492 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 96/518 (18%), Positives = 177/518 (34%), Gaps = 90/518 (17%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ L+ E + +D E + ++ + T + Sbjct: 34 LFLKFLDD-YESEKEDEAVLSGKDYQPVLDEEHRWSNWACPKNAEGKLDINKV---RTGD 89 Query: 99 NLESYIA---------------------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 +L Y+ SF+ AIF+ D ++ L ++ Sbjct: 90 DLTEYVNNELFPYLKSFANAAVTGSDPKSFAYKIGAIFQYLD-----NKVASGHTLREVL 144 Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + + +S +YE L++ G + A +F TPR VV + Sbjct: 145 DIIDTLNFQ-SSDEMFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMIKAI------ 196 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETH 252 P +T+YD G+ GFL +A +H+ G E + Sbjct: 197 ----DPQAGQTIYDAAAGSCGFLVEAFDHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAY 252 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDK 309 + + M++ +E S N+ +G+TL++ D+ R+ L+NPPFG K + Sbjct: 253 VMGMMNMILHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKDQI 305 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 F K + +LF+ H L+ GG+AAIV+ LF + Sbjct: 306 QQN-----------FPV---KANATELLFMQHFMKTLKS----GGKAAIVVPEGILF--Q 345 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428 S ++++ LLEN + I++LP +F + + T + +V Sbjct: 346 TNSAFKQVKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSEVWYYECE 402 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMS 487 K + I DD ++ +++Y SRE + S + + P + Sbjct: 403 PEQKLT-----KNKPITDDHLKEFVELYSSRETTERSWTVSASKLAEDYDLSAKNPAK-- 455 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 D LA + R L +I + ++ Sbjct: 456 -QKDAEHLAPSDILKQIRTKEKLVSGLLDEIEGLLAEK 492 >gi|192360754|ref|YP_001981159.1| type I restriction-modification system subunit M [Cellvibrio japonicus Ueda107] gi|190686919|gb|ACE84597.1| type I restriction-modification system, M subunit [Cellvibrio japonicus Ueda107] Length = 490 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 145/395 (36%), Gaps = 60/395 (15%) Query: 38 FTLLRRLECA---LEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ + E T + +K + D E F N L Sbjct: 33 LLFLKIYDDKEQEWELTHADYKSPLQKRFRWSNWAKDPEGMTGEELIDFVN--NNLFPAL 90 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 T+ S++ + I F ++ LL ++ + Sbjct: 91 KQLATKA-------GVSEHGRVIGSV--FEDAYNYMKSGTLLRQVINTIEDDVDFNKSND 141 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + ++IYE ++ S + A ++ TPR V + +P + +++D Sbjct: 142 RHLFNDIYEKILADLQSAGN--AGEYYTPRAVTQFIVDTI----------NPQLGESIFD 189 Query: 212 PTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P CGTGGFLT A+ H+ K HG E +P H + + M++ +E Sbjct: 190 PACGTGGFLTCAIEHLKSQAKTTADKKRLQKSIHGVEKKPLPHMLAITNMMLHGIEV--- 246 Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I+ +TLS KD R ++NPPFG ++D +EK R Sbjct: 247 ---PTQIRHDNTLSRPYKDYGPRDRVDIIITNPPFGG---MEEDGIEKNFLAKHQTR--- 297 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + +D LF+ + + L+ GRAA+VL LF + ++R LLE+ Sbjct: 298 ---ETAD---LFMALIMHLLKPT----GRAAVVLPDGFLFGEGVK---TTLKRELLEDFN 344 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 + IV LP +F T+IAT + + Sbjct: 345 LHTIVRLPKGVFAPYTSIATNILFFEKGGPTKDVW 379 >gi|225376200|ref|ZP_03753421.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM 16841] gi|225211846|gb|EEG94200.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM 16841] Length = 549 Score = 167 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 84/542 (15%), Positives = 196/542 (36%), Gaps = 92/542 (16%) Query: 28 HTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 +++ I+ L + L V++ S ++ ++ Y Sbjct: 30 SSEYK--IITEIFLYKFLNDKFL---YEVQQADEKLKNSENMEQALNNMSEDD-YEMLMM 83 Query: 87 SLSTLGSTNTRNNLESYI----------ASFSDNAKAI----FEDFDFSSTIA---RLEK 129 L + R + SY+ F I + F S+ RL Sbjct: 84 LLPPATAKLKREHFISYLFNHKNDEKFNELFDSTLWDISNTNLDVFSVSTGSGDKIRLFD 143 Query: 130 AGLLYKICKNFSGIELHPDTVPD--------------RVMSNIYEHLIRRFGSEVSEGAE 175 L + ++ + + + I+E+LI+ + + + Sbjct: 144 QNLSQNVTESNRRSDFCKAMIDKLVTFSFAEAFSQKYDFFATIFEYLIKDYNKDFGK-YA 202 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 ++ TP + + +++ T+YDP G+G + + + + Sbjct: 203 EYYTPHSIASIIARIMVSEGV--------QNVTVYDPAAGSGTLVLALAHEIGESN---- 250 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----- 290 + Q++ +++ L L + ++ G TL + Sbjct: 251 ----CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGL 301 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHL 342 +F Y +SNPPF + ++D + + RF G+P + + +FL H+ Sbjct: 302 MKFDYIVSNPPFNVDFSDNRDTL---AGDIYKERFWAGVPNVPNKKKDSMAIYQMFLQHI 358 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 ++ GGRAA+V+ + L G +IR ++E+ ++ +V++P+++F T Sbjct: 359 IFSMK---ENGGRAAVVVPTGFLTAG--TGIPKKIRERIVEDRMLRGVVSMPSNIFATTG 413 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRE- 460 + L N K E+ L++A+ L T ++ +GK +R +++ ++ I++ + + E Sbjct: 414 TNVSVLFLDNSKKYEQA---ILMDASKLGTKVKVDGKNQRTVLSPEEIEDIINTFNNFEP 470 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDIL 519 FS ++D Y +I + + + + +E +++ + ++ Sbjct: 471 KDDFSVVVD-----YDKIVQKKCSFSAGQYFEVKIEYVELTQEEFQEKMNSYTEKLTELF 525 Query: 520 KP 521 Sbjct: 526 AE 527 >gi|242399586|ref|YP_002995011.1| Type I restriction-modification system methyltransferase subunit [Thermococcus sibiricus MM 739] gi|242265980|gb|ACS90662.1| Type I restriction-modification system methyltransferase subunit [Thermococcus sibiricus MM 739] Length = 498 Score = 167 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 98/482 (20%), Positives = 171/482 (35%), Gaps = 71/482 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95 L+ L E + K + I E F S + + + Sbjct: 34 MLFLKILSDREEERKLEAEVKGEKYVPI-IKEEYLFHNWPKRFGVDSLKKVKDVKTFYDF 92 Query: 96 TRNNLESYIASF--SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 N L Y++S +D I E FS+ ++ L +I +N I H D Sbjct: 93 ITNELWPYLSSLGGTDELNKIGEI--FSNVTVKVHDPHNLLEIFQNIEDI--HKDDEDTH 148 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 +MS +YE + G E A ++ TPR +V ++ P + +T++DP Sbjct: 149 IMSQLYEETLMLMGREGGA-AGEYYTPRPIVRFMVKVV----------DPRIGQTVFDPF 197 Query: 214 CGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 CG+GGFL +A NH+ + + +GQEL+ + + + L+ + + + Sbjct: 198 CGSGGFLVEAYNHMYEQAKTAEDLRKLDKAFYGQELKTQAYLIANMNTLLHNVNAKLVKT 257 Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 T S+DL G+ + L+NPPFG K ++ + K Sbjct: 258 --------DTFSEDLHNPGELYDVILTNPPFGGKIKESNLQNL--------------IVK 295 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 + L H+ K + GG+ IVL L ++R+ LLE + + AI Sbjct: 296 TRSTELAALQHVMKKAKP----GGKVGIVLPDGVL--SNVTKAYVKVRKELLEKNNVFAI 349 Query: 391 VALPTDLFFR------TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 V+LP +F + T L K + I GK Sbjct: 350 VSLPQGVFANISPKGGSGPKTSLLFFERGKPTRE---------VWYYELIPPNGKNYTRA 400 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 N + + D E K D + + + S+++ + ++ D++ Sbjct: 401 NPIKDEDLSDALKKFEAWKKYLETDDEEWKKKALS-----ENSWVVSVEEIKEMDYDLSA 455 Query: 505 RK 506 R Sbjct: 456 RN 457 >gi|187931566|ref|YP_001891550.1| type I restriction-modification system, M subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712475|gb|ACD30772.1| type I restriction-modification system, M subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 482 Score = 167 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E Y+ + G + Sbjct: 32 LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 91 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 92 IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S IYE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGDKEKATIQTNF-------- 302 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 402 KNKPIQFEHFAEFLEIWQSRKLTDNSWIVNVAD 434 >gi|294782728|ref|ZP_06748054.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA] gi|294481369|gb|EFG29144.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA] Length = 545 Score = 167 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 84/550 (15%), Positives = 192/550 (34%), Gaps = 80/550 (14%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 ++ +I L + + + E+ I + + + Sbjct: 28 DGNEYK-IITQVFLYKFINDKFGYEIKKINEELKNAEKWEILYSNMNEEDRLYLLDELSA 86 Query: 87 SLSTLGSTNTRNNLESYIAS------FSDNAKAIFEDFD--FSST---------IARL-- 127 + L + +NL + + F I + + F++ +L Sbjct: 87 DVPLLEPQHLISNLWNQQSKGDFALIFDQTMVDIAQKNEDIFATQTTLNTKIPIFEKLTI 146 Query: 128 ------EKAGLLYKICKN---FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 E++ + FS E+ + I+E+LI+ + + ++ Sbjct: 147 YVTDENERSNFARALVDKLVNFSFEEVFGEHYDFFA--AIFEYLIKDYNTNGGGKYAEYY 204 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP+ + + LL+ YDP+ GTG + + + + Sbjct: 205 TPQSIATIMARLLVGNKKDYHSVE------CYDPSAGTGTLVMALSHQIGE--------D 250 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292 Q++ ++ + +++ L + QG TL F Sbjct: 251 KCTIFTQDISQRSNKMLKLNLILNGL-----VSSLDHAIQGDTLVYPYHKSDNGEDLRTF 305 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---LPKISDGSM----LFLMHLANK 345 + +SNPPF + ++++ + RF G +P SM LF+ H+ N Sbjct: 306 DFVVSNPPFKMDFSENREKIAA-----MPARFWAGVPNIPAKKKESMAIYTLFIQHVINS 360 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G+ AIV+ + F E +I ++E+ ++ V++P+++F T Sbjct: 361 LKSKT---GKGAIVIPTG--FITAKSGVEKKILEKIVESKIVYGCVSMPSNVFANTGTNV 415 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464 + N K KV LI+A+ L ++ K+R + ++ I++ + ++N F Sbjct: 416 SVLFFDNAK---NHDKVILIDASKLGEDYQDGKNKKRRLREEDIELIINTFNDKKNVDDF 472 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKP 521 S + Y ++ + ++ + E + ++ Q ++ + + K Sbjct: 473 SIAVSYEEIKEKKYSLSAGQYFDIKIEYIDMTPEEFEAKMKEYQKELQEYFEEGEKLQKE 532 Query: 522 MMQQIYPYGW 531 +M+Q+ + Sbjct: 533 IMEQLGKIKY 542 >gi|320352780|ref|YP_004194119.1| adenine-specific DNA-methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320121282|gb|ADW16828.1| Site-specific DNA-methyltransferase (adenine-specific) [Desulfobulbus propionicus DSM 2032] Length = 484 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 86/483 (17%), Positives = 158/483 (32%), Gaps = 82/483 (16%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGK----VILP-FTLLRRLECALEPTRSAVREKYL 60 + ++L + +G L L+ + E +R+ Y Sbjct: 2 SNVSTLVK---SIQNIMRK--DAGTYGDAQRLEQLGWMFFLKIFDDR-EKELELLRDDYS 55 Query: 61 AFGGSNI-------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + + D E F N + L L + + + + + Sbjct: 56 SPLAPELRWCNWAADEEGLTGEGLLDFVNNT--LLPRLKNLAVGADRVAAL------VRT 107 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 FED + ++K L+ ++ +GI+ + + +IYE L++ S + Sbjct: 108 AFEDAN-----NYMKKGTLMRQVINKINGIDF-NASDDRHLFGDIYEKLLKDLQSAGN-- 159 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 A +F TPR V + P + T+ DP CGTGGFL + H+ Sbjct: 160 AGEFYTPRAVTQFIVEQV----------DPRLGETVLDPACGTGGFLVCTIEHLRRQART 209 Query: 234 HKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFT 288 + + G E + H +C+ +++ ++ ++ +TL +D Sbjct: 210 AEDERTIQECFTGIEKKHLPHILCMTNLMLHGIDV------PAGVRHDNTLARPLRDWTR 263 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +R ++NPPFG ++D +E R L Sbjct: 264 QERVDVIVTNPPFGG---MEEDGIEANFPAEFRTRETA-------------DLFLVLLMK 307 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATY 406 GGRA +VL LF + I+ LL + IV LP +F + T I T Sbjct: 308 LLKPGGRAGLVLPDGTLFGEGVK---TRIKETLLTECNLHTIVRLPNGVFNPY-TGIRTN 363 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 L + + + K + I ++ + RE F+ Sbjct: 364 LLFFTKGQPTTEIWYY-----EHPYPPGAKSYNKTKPIRIEEFAPERAWWHKREENAFAW 418 Query: 467 MLD 469 +D Sbjct: 419 RVD 421 >gi|305665032|ref|YP_003861319.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Maribacter sp. HTCC2170] gi|88709784|gb|EAR02016.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Maribacter sp. HTCC2170] Length = 707 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 93/456 (20%), Positives = 166/456 (36%), Gaps = 74/456 (16%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG------ 92 LR L+ LE ++ E +D E + + + L Sbjct: 34 MFLRYLDE-LEQDKADEAELKGEEYKFILDEEY-----RWPIWAMPKDDDGKLDYHKAMT 87 Query: 93 ----STNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGI 143 L Y+A F +DN K I FS +++ L +I + + Sbjct: 88 GPDLVQFVDRKLFPYLAEFKQKADNPKTIEYKIGEIFSELKNKIKSGYNLREILEYADEL 147 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + +S++YE I+ G + TPR ++ ++ P Sbjct: 148 PFR-ASTDKHELSHLYESKIKNMG-NAGRNGGQYYTPRPLIRAMINVI----------DP 195 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGM 259 + +YD G+ GFL + ++ + + K +G+E + + + V M Sbjct: 196 QIGEKIYDGAAGSCGFLCETYEYMYERMEKTTGNLKTLQEETLYGKEKKNLAYVIGVMNM 255 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 ++ +E + NI +TL + D+ R+H L+NPPFG K K+ Sbjct: 256 ILHGIE-------APNIIHTNTLGENVRDIQEKNRYHVILANPPFGGKERKEVQQNFDI- 307 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 K + + LFL H L+ GGRAAIV+ S L N S Sbjct: 308 -------------KTGETASLFLQHFIKSLKT----GGRAAIVIKDSFLSN-NTEKAYST 349 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 +R+ LL + + I+ LP F+ + T + + ++ +L R Sbjct: 350 LRKNLLGSCELNCILDLPRGTFYGAGVKTVVLFFTKGAPTKKIWYYKL-------DPKRT 402 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 G K + +ND+ + L+ ++E GK S ++ Sbjct: 403 LG-KTKPLNDNDFKDFLEKIRNKEIGKNSWIIKAHE 437 >gi|294850236|ref|ZP_06790971.1| type I restriction-modification system [Staphylococcus aureus A9754] gi|294822852|gb|EFG39286.1| type I restriction-modification system [Staphylococcus aureus A9754] Length = 346 Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 105/301 (34%), Gaps = 48/301 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + GQE T+ + ML+ + R + +I+ T Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345 Query: 282 L 282 L Sbjct: 346 L 346 >gi|83647702|ref|YP_436137.1| type I restriction-modification system methyltransferase subunit [Hahella chejuensis KCTC 2396] gi|83635745|gb|ABC31712.1| Type I restriction-modification system methyltransferase subunit [Hahella chejuensis KCTC 2396] Length = 539 Score = 167 bits (422), Expect = 7e-39, Method: Composition-based stats. Identities = 79/527 (14%), Positives = 171/527 (32%), Gaps = 80/527 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGS-NIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 +RRL+ + + E+ ++ +F + + + Sbjct: 52 LLFIRRLDEIQRNEERKAQATGESLENPIFSSQEAMLRW--NNFKDKDPNEMFDIVQNKV 109 Query: 97 RNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 +++ + SF+++ K I + LL ++ + I+++ Sbjct: 110 FPKIKNLQSQGSFAEHMKD---------AIFMIPSPKLLDQVVQMLDNIDMN----DKDT 156 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++YE+L+ + + F TPR ++ + L+ P + T+ DP Sbjct: 157 KGDLYEYLLSKLS--SAGVNGQFRTPRHIIKMMVELM----------KPQINDTICDPAA 204 Query: 215 GTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 GT GFL ++ ++ + + K + + + + ML+ +E Sbjct: 205 GTCGFLMSSVEYIREHYQAELTKADNRKHFNNGLFTAYDFDRHMLRIGAMNMLLHGIE-- 262 Query: 268 PRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--- 322 + + +L D + + L+NPPF + D A + G+ Sbjct: 263 -----NPAVYYRDSLQDHNDANISEAYSLMLANPPFKGSVDFDIVASDLLRALGKNPAAK 317 Query: 323 -----------RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 +LFL + L+ GGRAA+++ LF + Sbjct: 318 KARVKEEEDEDGKKKKKGPTEKSELLFLALILRMLKT----GGRAAVIVPDGVLF--GST 371 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430 IR+ L++ ++A+++LP+ +F ++T + I + + KV + Sbjct: 372 KSHKSIRQKLVKEQKLQAVISLPSGVFKPYAGVSTAILIFTKTNSG-GTDKVWFYDMQAD 430 Query: 431 WTSIRNEGKKRRIINDD---------QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 + KR + D IL Y S E + RT + + Sbjct: 431 GY---SLDDKRTKLFKDGEEPSHEQSNIADILARYASIEEEDSTEAHRKRTEQSFMVPLK 487 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + L + + + D+ K M + Sbjct: 488 DIEANDYDLSLNRYKEVVYEEVEYDEPKVILQRIKDLQKKMADGVKE 534 >gi|21229249|ref|NP_635171.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] gi|20907823|gb|AAM32843.1| type I restriction-modification system specificity subunit [Methanosarcina mazei Go1] Length = 504 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 82/457 (17%), Positives = 155/457 (33%), Gaps = 93/457 (20%) Query: 38 FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 ++RLE LE R+ K G+ SE+ + Sbjct: 36 LIFMKRLEDMDVLEQRRANATGKA-----------YISIFEGHEECRWSEW--KHKSAEE 82 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVP 151 ++ + F N E FS + + K L+ + +++ Sbjct: 83 MLKHVRDVVFPFIKNIHD-GEKTLFSQHMKDAVFIIPKPSLVQEAVGIIDELDI--SGQT 139 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 V +IYE+L+ + + F TPR ++ + L+ P + + D Sbjct: 140 SDVQGDIYEYLLSQLATAGK--NGQFRTPRHIIRMIVELV----------DPDVNDRICD 187 Query: 212 PTCGTGGFLTDAMNHVA----------------------DCGSHHKIPPILV---PHGQE 246 P CGT GFL A ++ D + L +G + Sbjct: 188 PACGTAGFLFTAYRYILKKYTSPDMVTEDEEGDWHGLIGDHITEQNAWDKLHQDTFYGFD 247 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + + + M++ ++ + +I+ TLS + F L+NPPF Sbjct: 248 FDSTMVRIALMNMVLHGIK-------APHIESTDTLSNQYSGEEAFTVILANPPFKGSI- 299 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 KN R G K +LF+ + L GG+ +++ LF Sbjct: 300 ---------DKNDINDRLTLGTTKT---ELLFVEKMYRML----EIGGKCGVIVPDGVLF 343 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI 425 + + ++R+ LLE +E IV++P+ +F ++T + I +N E KV Sbjct: 344 --GSSNAHRDLRKLLLEKCQLEGIVSMPSGVFKPYAGVSTAVLIFTNGGNTE---KVWFY 398 Query: 426 NATDLWTSIRNEGKKRRIIN-DDQRRQILDIYVSREN 461 + + KR ++ I++ + +R Sbjct: 399 DMEADGY---SLDDKRTPLDRKGDIPDIIERFRNRRE 432 >gi|194336313|ref|YP_002018107.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1] gi|194308790|gb|ACF43490.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1] Length = 544 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 78/486 (16%), Positives = 170/486 (34%), Gaps = 73/486 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 +F +I L + L + + L Sbjct: 29 DGNEFK-IITQVFLYKFLNDKFAFEAKRIDSRLSGSESWEQALTLLTADELEMLQLQMGP 87 Query: 87 SLSTLGSTNT------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 + L + N + F D + I + A G + Sbjct: 88 DTARLKPDHFIAHLFRNQNAPQFAKLFDDTLRDI--AITNNDIFAVKTDGGAKVTLFDRL 145 Query: 141 SGIELHPDTVPD----------------------RVMSNIYEHLIRRFGSEVSEGAEDFM 178 S D ++++E+LI+ + + ++ Sbjct: 146 SEYITDESKRDDFCRAIINTLVDFSFERIFTQKYDFYASLFEYLIKDYNKDSGGKYAEYY 205 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V + ++L+ + YDP+ G+G L + + + + Sbjct: 206 TPHAVAKIMASILVPEVQ----RGKVTNASCYDPSSGSGTLLMNLAHAIGE--------Q 253 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294 + Q++ ++ ++ L + NI QG+TL K+F Y Sbjct: 254 RCTIYSQDISQKSSSLLR-----LNLILNNLVHSIPNIIQGNTLLHPYHKEGKALKKFDY 308 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLE 347 +SNPPF + ++ ++ ++ RF G+P + + LFL H+ L+ Sbjct: 309 IVSNPPFKMDFSDFRNELDTREQHE---RFFAGIPNVPKQATDKMAIYQLFLQHIIYSLK 365 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GG+AA+V+ + F + +IR L++ ++ +V++P+++F T + Sbjct: 366 P----GGKAAVVVPTG--FITAQSGIDRKIRERLVDGKMLAGVVSMPSNIFATTGTNVSI 419 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466 + + + V LI+A+ L T ++ ++ ++++D+ I+ + S+E FS Sbjct: 420 LFID----DGNKDDVVLIDASSLGTKVKEGKNQKTVLSEDEEDWIITTFNSKEAEEDFSV 475 Query: 467 MLDYRT 472 +++Y Sbjct: 476 VVNYDE 481 >gi|296876905|ref|ZP_06900951.1| type I restriction enzyme M protein [Streptococcus parasanguinis ATCC 15912] gi|296432097|gb|EFH17898.1| type I restriction enzyme M protein [Streptococcus parasanguinis ATCC 15912] Length = 534 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 99/550 (18%), Positives = 216/550 (39%), Gaps = 89/550 (16%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGG----SNIDLESFVKVAG---- 77 + ++ +L + L + L ++ V ++ + S D + ++ G Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFL-YQAKVLDESNTYENLLAMSEEDYDWLLEDIGTSTA 84 Query: 78 -----------------YSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIF 115 +FY T E +L+ + N + ++ I F + + I Sbjct: 85 WLKPDQLIGTLHRQQNEATFYETFENTLNQIAIDNNDIFSVHTDGDTAIRLFDE--RLIT 142 Query: 116 EDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + SS + KA LL ++ F S ++E++I+ + + Sbjct: 143 DTISDSSKRNEVAKAIINLLARV--KFDETIFS---QGFDFFSTLFEYMIKDYNKDGGGK 197 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP V + +L+ D +YDP+ G+G L + + + Sbjct: 198 YAEYYTPHSVAKIIADILVGDDK-------PQNVRIYDPSAGSGTLLMNLASRI------ 244 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + Q++ ++ + L + + NI QG+T+ + ++ Sbjct: 245 --GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMD 296 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKL 346 Y +SNPPF + + +D VE + E RF G+PK S M LF+ H+ L Sbjct: 297 YIVSNPPFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSL 354 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+AA+VL + F + IR+ L++N ++ +V++P+++F T Sbjct: 355 KPD----GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVS 408 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465 + + + +G V LI+A++L T ++ ++ +++ ++ ++I+ ++ +E + FS Sbjct: 409 ILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVGTFIKKEAVEDFS 464 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKP 521 + Y + + +D + E + KLS L Q + + Sbjct: 465 VTVSYEDIKEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQNKLSDLFQQSH-ALEQE 523 Query: 522 MMQQIYPYGW 531 + +Q+ + Sbjct: 524 IEKQMKGLKY 533 >gi|163858307|ref|YP_001632605.1| type I restriction modification enzyme M subunit [Bordetella petrii DSM 12804] gi|163262035|emb|CAP44337.1| type I restriction modification enzyme M subunit [Bordetella petrii] Length = 492 Score = 166 bits (421), Expect = 9e-39, Method: Composition-based stats. Identities = 91/436 (20%), Positives = 150/436 (34%), Gaps = 73/436 (16%) Query: 10 SLANFIWKNAEDLWGDF----KH---TDFGKVILPFTLLRRLECA---LEPTRSAV---R 56 SLA I + + D + I L+ + E T+S+ Sbjct: 2 SLATLIKAIQDIMRKDVGVDGDAQRISQ----ICWLLFLKIFDDKEQEWELTQSSYRSPL 57 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 + + D E F N L T+ S + I Sbjct: 58 QSRFRWSNWAKDPEGMTGEELIDFVN--NDLFPALKQLATKA-------GVSAQGRVIGS 108 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F ++ LL ++ + + +++YE ++ S + A + Sbjct: 109 V--FEDAYNYMKSGTLLRQVINTIEEDVDFNSSSDRHLFNDVYEKILSDLQSAGN--AGE 164 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHH 234 + TPR V +L P + ++ DP CGTGGFLT A+ H+ Sbjct: 165 YYTPRAVTQFIVDIL----------DPKLGESILDPACGTGGFLTCAIEHLKKQVKTPDD 214 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKR 291 HG E +P H + + M++ ++ I+ +TLS KD R Sbjct: 215 NRLLQENIHGVEKKPLPHMLAMTNMMLHGIDV------PTRIRHDNTLSRPFKDYGPRDR 268 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 ++NPPFG ++D +EK R + +D LF+ + + L+ Sbjct: 269 VDIIITNPPFGG---MEEDGIEKNFLAKHQTR------ETAD---LFMALITHLLKHDT- 315 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GRAA+VL LF + ++R LLE + IV LP +F T+IAT + Sbjct: 316 --GRAAVVLPDGFLFGEGVK---TTLKRELLEEFNLHTIVRLPKGVFAPYTSIATNILFF 370 Query: 411 SNRKTEERRGKVQLIN 426 V Sbjct: 371 EKGGP---TQDVWFFE 383 >gi|17231112|ref|NP_487660.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC 7120] gi|17132753|dbj|BAB75319.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC 7120] Length = 484 Score = 166 bits (421), Expect = 9e-39, Method: Composition-based stats. Identities = 82/499 (16%), Positives = 177/499 (35%), Gaps = 58/499 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E + + Y + + ++ + + L Sbjct: 33 MIFLKVFDAR-EEEYELLEDNYKSPIPEGLRWRNWAADSEG----ITGDGLLDFVDNALF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + +D + F ++ L+ ++ + ++ + S Sbjct: 88 KTLKELRTTATDARGQMIGKV-FEDAYNYMKNGTLIRQVINKLNEVDFNKKDQKK-QFSE 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A ++ TPR V + P + ++DP CGTG Sbjct: 146 IYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPACGTG 193 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A++++ +P G E +P + +C+ +++ ++ Sbjct: 194 GFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPYNLCITNLILHGIDVPEA------ 247 Query: 276 IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + +TL +D +R ++NPPFG ++D +E P + Sbjct: 248 -EHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LFL+ +A+ L+ GGR AIVL LF + I+ LL++ + IV Sbjct: 295 ETADLFLVLIAHLLKE----GGRGAIVLPDGTLFGEGVK---TRIKEKLLQDCNLHTIVR 347 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T L + + E + + K + I ++ Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTETIWYY-----EHPYPAGYKSYSKTKPIRFEEFAP 402 Query: 452 ILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 + + +RE +F+ + + + P ++ + +L Sbjct: 403 EQEWWDNREENEFAWKVSIADLKANNYNLDIKNPHKVDVEHADLDEMLADHQKLMAELGE 462 Query: 510 LHQSFWLDILKPMMQQIYP 528 + ++++ + Q+ Sbjct: 463 VRSKLKFELIEALNDQVDK 481 >gi|53729078|ref|ZP_00348313.1| COG0286: Type I restriction-modification system methyltransferase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208662|ref|YP_001053887.1| type I restriction-modification system, M subunit [Actinobacillus pleuropneumoniae L20] gi|126097454|gb|ABN74282.1| type I restriction-modification system, M subunit [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 550 Score = 166 bits (421), Expect = 9e-39, Method: Composition-based stats. Identities = 91/590 (15%), Positives = 213/590 (36%), Gaps = 88/590 (14%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLL-RRLECALEPTRSAVR 56 MTE F L + + A G+ +F I+ L + L ++ Sbjct: 1 MTEQLFQQKTKELIDSLKAICANYGLGN-DGNEFK--IITQVFLYKFLNDKFAF---EIK 54 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT------------RNNLESYI 104 + + + ++ +++ F +++ G T ++N+ ++ Sbjct: 55 QIKPSLAEHDSWEQALGEMSAEDF---DFLTMNMNGDTAILRPNQFISHLFNQSNIANFA 111 Query: 105 ASFSDNAKAI-----------------FEDFD-FSSTIARLEKAGLL-YKICKNFSGIEL 145 F + I FD S IA K + Sbjct: 112 NLFDETLMDIAAQNADIFSVKTEGGAKINLFDRVSQYIADPSKRDAFCRAVINKLVEFSF 171 Query: 146 HPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + I+E+LI+ + + ++ TP V + A+L+ + ++ Sbjct: 172 EHIFNQKFDFYATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILVPENVRGQLQN-- 229 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + YDP+ G+G L + + + + + Q++ ++ + L Sbjct: 230 --VSCYDPSAGSGTLLMNIAHAIGE--------KKCTIYTQDISQKSSNLLRL-----NL 274 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + N+ QG+T++ ++F Y +SNPPF + + ++ + + Sbjct: 275 ILNNLVASIPNVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREEL---AETAH 331 Query: 321 LGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 RF G+P + +LF+ H+ + L+ G+AA+VL + F Sbjct: 332 KARFFAGVPNVPKAKKEGMKIYLLFVQHIIHSLKAD----GKAAVVLPTG--FITDQSKI 385 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 + +IR +L+ ++ +V++P+++F T + L E V LI+A++L Sbjct: 386 DKKIREFLVNEKMLAGVVSMPSNIFATTGTNVSILFLDRANQEN----VVLIDASNLGEK 441 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I+ ++ +++ ++ ++I+D++ ++ FS ++ Y + + D Sbjct: 442 IKEGKNQKTVLSAEEEQRIIDVFNQKKAEEDFSVVVSYANIEAKNYSLSAGQYFDVKTDH 501 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 + E + + + + K + QI F + +++ Sbjct: 502 IDITAAEFEQKMADFQQNLTALFAES-KALESQIQQQMATLKFNAQVVEN 550 >gi|315918351|ref|ZP_07914591.1| type I restriction-modification system DNA methylase [Fusobacterium gonidiaformans ATCC 25563] gi|313692226|gb|EFS29061.1| type I restriction-modification system DNA methylase [Fusobacterium gonidiaformans ATCC 25563] Length = 322 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 33/253 (13%) Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + GQE+ + M + + + + Sbjct: 32 GSGSLLLQMKKQFEEHIIEEG------FFGQEINMTNFNLARMNMSLHNINYN-----NF 80 Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331 +I++G TL L ++ F +SNPP+ KW D D RF P L Sbjct: 81 SIKRGDTLLNPLHNEEKPFDAIVSNPPYSIKWVGDADPT-----LINDERFAPAGKLAPK 135 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S F+MH + L GRAAIV + A E IR++L++N+ ++ ++ Sbjct: 136 SYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---ERTIRKYLVDNNFVDCVI 188 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +LFF T+IAT + +++ KTE +V I+A+ + N I+ + Sbjct: 189 QLPDNLFFGTSIATCILVMAKNKTE---NRVLFIDASKEFKKETN----NNILEEKNINT 241 Query: 452 ILDIYVSRENGKF 464 I++ + +RE ++ Sbjct: 242 IVEEFRNREEKEY 254 >gi|293609931|ref|ZP_06692233.1| type I restriction enzyme [Acinetobacter sp. SH024] gi|292828383|gb|EFF86746.1| type I restriction enzyme [Acinetobacter sp. SH024] Length = 498 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 76/521 (14%), Positives = 162/521 (31%), Gaps = 96/521 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +RRL+ K + + + L Sbjct: 40 LLFIRRLD--------------EIQITKEKKANRLKKPVEHPIFTPEQDHLRWSK----F 81 Query: 98 NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144 L +S A +F D ++ ++ A LL K+ + + Sbjct: 82 ITLGDAATLYSTVANEVFPFIKNLGAEDETTYSHHMKDARFTIPTPALLTKVVDLVADVP 141 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + +IYE+++ + + F TPR ++ + L+ P Sbjct: 142 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------QPK 185 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCV 256 T+ DP CGT GFL A ++ D K G + + + Sbjct: 186 PTDTICDPACGTAGFLVAASEYLNDHYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGS 245 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + I+ +LS+ ++ L+NPPF + + A + Sbjct: 246 MNMMLHGVE-------NPRIENRDSLSETHSHIESKYSLILANPPFAGSLDNESCAKNIQ 298 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + K + GGRAA+++ LF + + Sbjct: 299 A-----------VVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHK 341 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +R+ ++E +EAI+++P+ +F ++T + I + + KV + Sbjct: 342 ALRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY-- 398 Query: 435 RNEGKKRRIIND-----DQRRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRP 483 + KR ++ + I+ + R+ + S M+D + Sbjct: 399 -SLDDKRNELDASKHENNNIPDIIARFKNLDGEKDRKATEQSFMVDKADIAANGYDLSIN 457 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + ++ + ++ + LK M++ Sbjct: 458 RYKEVVYEQVEYEAPSKILADLEVLEQDILKGMATLKEMLK 498 >gi|56708241|ref|YP_170137.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Francisella tularensis subsp. tularensis SCHU S4] gi|110670712|ref|YP_667269.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Francisella tularensis subsp. tularensis FSC198] gi|56604733|emb|CAG45804.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Francisella tularensis subsp. tularensis SCHU S4] gi|110321045|emb|CAL09187.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Francisella tularensis subsp. tularensis FSC198] Length = 488 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E Y+ + G + Sbjct: 38 LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 97 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 98 IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 154 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S IYE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 155 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 203 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 204 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 263 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 264 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 308 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 309 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 355 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 356 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 407 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 408 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTD 440 >gi|167628749|ref|YP_001679248.1| type i restriction-modification system, m subunit [Heliobacterium modesticaldum Ice1] gi|167591489|gb|ABZ83237.1| type i restriction-modification system, m subunit [Heliobacterium modesticaldum Ice1] Length = 478 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 161/473 (34%), Gaps = 84/473 (17%) Query: 20 EDLWGDFKHT-----DFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFGGSNIDL 69 + + + + I L+ + LE V + + D Sbjct: 12 DIMR--IDAGINGDAQYIEQIAWLLFLKAFDYKEQEWELEDDYVPVIPEQYRWRNWAEDD 69 Query: 70 ESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSDNAKAIFEDFDFSSTIARLE 128 E G + E TL + + + + ++ + + E + ++ Sbjct: 70 EGI---TGDALIEHVENMFRTLRNLDVSDGDPRKFL------VRDVMEGVN-----NFMK 115 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 LL ++ + + + + IYE +++ + + A +F TPR V Sbjct: 116 SGTLLRQVINKINADINFDEVKTAHLFNGIYESMLKDL--QSAGKAGEFYTPRPVTRFIV 173 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 K +P + + DP CGTGGFLT ++ + G E + Sbjct: 174 D----------KVNPQLGEIVLDPACGTGGFLTSVIDRFDIKTADEYRTLQKTIRGIEKK 223 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPF-GKK 304 P +CV ++ ++ I+ +TL + ++NPPF G + Sbjct: 224 PFPFLLCVTNLIAHGIDVPL-------IRHDNTLRTPTTDYSLADKVDVIVTNPPFGGAE 276 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 + +V E +N E + LFL+H+ L+ GGR +VL Sbjct: 277 EKAISQSVPAELRNTE-------------TADLFLVHIMALLKD----GGRCGMVLPDGF 319 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423 LF + I++ LLE + + IV LP D+F TNI T L + K + Sbjct: 320 LFGTGVK---AAIKKKLLEENNLHTIVRLPKDVFAPYTNINTNLLFFTKGKPTQ------ 370 Query: 424 LINATDLWTSIRNEG----KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + +G K + + + + + +R+ S+ + Sbjct: 371 ---GVWFYRLEMPQGYKHFSKTKPMLYEHFAPVRAWWNNRKESDVSQYVPVED 420 >gi|254415510|ref|ZP_05029270.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196177691|gb|EDX72695.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 513 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 100/483 (20%), Positives = 180/483 (37%), Gaps = 78/483 (16%) Query: 7 SAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLE---CALEPTRSAVRE 57 S L N IW+ + L G ++ + + L+ L+ A E + Sbjct: 2 SREQLTNDIWRACDILRRDNNCGGVM---EYVEHLSWLLFLKFLDGQEDAFEQEAKSANR 58 Query: 58 KYLAFGGSNIDLESFVKVA------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 KY ++V A + L R L ++AS S + Sbjct: 59 KYTRVISRQYRWSNWVTKALGKKGGKKGRRTIPAWDDHQLM-EFVRGELIPHLASLSGSP 117 Query: 112 -KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + + + + L + K I+L + +S+IYE L++R GSE Sbjct: 118 EREVIAGIFRDRNVIICDSPDNLKDVLKIVDQIDLT-NPDDIYTVSHIYEDLLKRLGSE- 175 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 ++ A +F TPR V+ ++ P + T+YDP CGT GFL +A H Sbjct: 176 NKMAGEFYTPRSVIRFMVEVI----------DPQIGETVYDPACGTCGFLLEAFLHTQKQ 225 Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-- 285 +I GQE +P + M++ + L +I++ +TL++D Sbjct: 226 EKTAKDREILQRHTFVGQEKKPLPALLGTMNMVLHGV-------LVPDIRRRNTLAEDIR 278 Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMH 341 + F L+NPPFG K E R P ++ +LFL H Sbjct: 279 DGSGLFDETFDVILTNPPFGGK---------------ENARIQKNFPVKANATELLFLQH 323 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 + KL+ G R IV+ LF G A + +++ LL + + +V+LP F Sbjct: 324 VMKKLKP--KQGARCGIVVPEGTLFRGGA---FATVKKELLHDFNLFMVVSLPPGTFAPY 378 Query: 401 TNIATYLWILSNRKTEERR--GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 +++ L + ++ ++ L + + K I+D+ + ++ Sbjct: 379 SDVKAALLFFERGEQQKEVLYQEIALPDDLKKF-------SKVNSISDEHFAEARQVWQQ 431 Query: 459 REN 461 ++ Sbjct: 432 MKD 434 >gi|224457359|ref|ZP_03665832.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Francisella tularensis subsp. tularensis MA00-2987] gi|282159467|gb|ADA78858.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Francisella tularensis subsp. tularensis NE061598] Length = 482 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E Y+ + G + Sbjct: 32 LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 91 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 92 IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S IYE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 402 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTD 434 >gi|254370728|ref|ZP_04986733.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875062|ref|ZP_05247772.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|151568971|gb|EDN34625.1| hypothetical protein FTBG_00529 [Francisella tularensis subsp. tularensis FSC033] gi|254841061|gb|EET19497.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 487 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E Y+ + G + Sbjct: 37 LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 96 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 97 IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 153 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S IYE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 154 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 202 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 203 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 262 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 263 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 307 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 308 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 354 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 355 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 406 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 407 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTD 439 >gi|254435715|ref|ZP_05049222.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27] gi|207088826|gb|EDZ66098.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27] Length = 398 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 142/399 (35%), Gaps = 82/399 (20%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E + V GY S + ST Sbjct: 33 LIFLKIFDDK--------------------EQEWQLTVPGYKSPLPSRFRWSTWAKNPEG 72 Query: 98 NNLESYIASFSDNAKAIFEDFD------------------FSSTIARLEKAGLLYKICKN 139 E I F +N +F F ++ LL ++ Sbjct: 73 ITGEELID-FVNN--DLFPALKKLATTAGVSPHGKVVGSVFEDAYNYMKSGTLLRQVINT 129 Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + + ++IYE ++ S + A ++ TPR V +L Sbjct: 130 IEENVDFNKSGDRHLFNDIYEKILADLQSAGN--AGEYYTPRAVTQFMVDIL-------- 179 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVA 257 P + +++ DP CGTGGFLT A+ H+ + + HG E +P H + + Sbjct: 180 --DPQLGQSILDPACGTGGFLTCAIEHLNKQVKNNDDRQRLQDSIHGVEKKPLPHMLAMT 237 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEK 314 +++ ++ NI+ +TLS+ L +R ++NPPFG ++D +E Sbjct: 238 NVMLHGIDV------PTNIRHDNTLSRPLKNYSPKERVDIIITNPPFGG---MEEDGIEN 288 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 R + +D LF+ + + L+ G+AA+VL LF Sbjct: 289 NFPRKYQTR------ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGTK--- 333 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 + ++R LLE + IV LP +F ++ L + Sbjct: 334 TTLKRELLEEFNLHTIVRLPKGVFAPYTSIATIFCLLKK 372 >gi|134302158|ref|YP_001122127.1| N-6 DNA methylase family [Francisella tularensis subsp. tularensis WY96-3418] gi|134049935|gb|ABO47006.1| N-6 DNA Methylase family [Francisella tularensis subsp. tularensis WY96-3418] Length = 482 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E Y+ + G + Sbjct: 32 LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 91 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 92 IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S IYE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ S +++ Sbjct: 402 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVAD 434 >gi|75909478|ref|YP_323774.1| putative RNA methylase [Anabaena variabilis ATCC 29413] gi|75703203|gb|ABA22879.1| Putative RNA methylase [Anabaena variabilis ATCC 29413] Length = 479 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 82/496 (16%), Positives = 174/496 (35%), Gaps = 58/496 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E + + Y + + ++ + + L Sbjct: 33 MIFLKVFDAR-EEEYELLEDNYKSPIPEGLRWRNWAADSEG----ITGDGLLDFVDNALF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + +D + F ++ L+ ++ + ++ + S Sbjct: 88 QTLKELRTTATDARGQMIGKV-FEDAYNYMKNGTLIRQVINKLNEVDFNKKDQKK-QFSE 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A ++ TPR V + P + ++DP CGTG Sbjct: 146 IYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPACGTG 193 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A++++ +P G E +P +CV +++ ++ + Sbjct: 194 GFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILHGIDV-------PS 246 Query: 276 IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + +TL +D +R ++NPPFG ++D +E P + Sbjct: 247 AEHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LFL+ +A+ L+ GGR AIVL LF + I+ LL++ + IV Sbjct: 295 ETADLFLVLIAHLLKE----GGRGAIVLPDGTLFGEGVK---TRIKEKLLQDCNLHTIVR 347 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T L + + E + + K + I ++ Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTETIWYY-----EHPYPAGYKSYSKTKPICFEEFAP 402 Query: 452 ILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 + + +RE +F+ + + + P ++ +L Sbjct: 403 EQEWWDNREENEFAWQVSIADLKANNYNLDIKNPHKVDVEHADLDEMLAAHQKLMAELGE 462 Query: 510 LHQSFWLDILKPMMQQ 525 + ++++ + Sbjct: 463 VRSKLKFELMEALEGN 478 >gi|332184236|gb|AEE26490.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Francisella cf. novicida 3523] Length = 482 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 92/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L E Y+ ++ G + Sbjct: 32 LFLKFLNDYENEKSLEAELTGEDYIFVLDEKYRWNTWAAPKGADGKLDVINADSGDDLLE 91 Query: 95 NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ SF ++ K I F+F R+ L + + Sbjct: 92 FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S +YE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 149 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 S NI + +TL KD L R+ L+NPPFG K + Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302 Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P S+ +LFL H+ L+ GGR +V+ LF + + +++ Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LLEN + IV+LP +F + + T + E + + Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K + I + + L+I+ SR+ + S ++ Sbjct: 402 KNKPIQFEHFDEFLEIWQSRKLTENSWIVKVED 434 >gi|146294608|ref|YP_001185032.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] gi|145566298|gb|ABP77233.1| N-6 DNA methylase [Shewanella putrefaciens CN-32] Length = 549 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 93/517 (17%), Positives = 189/517 (36%), Gaps = 83/517 (16%) Query: 3 EFTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLL-RRLECALEPTRSAVREKYL 60 EF +L + + A G+ +F I+ T L + L + + Sbjct: 5 EFQQKTKTLIDSLKSICANYGLGN-DGNEFK--IITQTFLYKFLNDKFAFEAKKLDDNIA 61 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAI 114 L + + + L + ++ N + F D I Sbjct: 62 KADKWEEVLAAMSEGDLDMLQLQMGGDTARLKPQHFISHLFSQQNAPDFAKLFDDTLIDI 121 Query: 115 --------------------FEDFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTVPDR 153 F+ S IA K I Sbjct: 122 AITNNDVFAVKTDGGAKVVLFDRI--SQYIADESKRDAFCRAIINKLVEFSFERIFTQKF 179 Query: 154 VM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+E+LI+ + S ++ TP V + +L+ + + YDP Sbjct: 180 DFYATIFEYLIKDYNSNAGGKYAEYFTPHAVARIMAEILVP----KAQRGTVRNVSCYDP 235 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 + G+G L + + + + + Q++ ++ + L + Sbjct: 236 SAGSGTLLMNVAHAIGEN--------RCSIYTQDISQKSSNLLR-----LNLILNNLVHS 282 Query: 273 SKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 N+ QG+T+ +KD KRF Y +SNPPF + +D ++ + N RF Sbjct: 283 IPNVIQGNTIQHPYHVESTKDGKALKRFDYIVSNPPFKLDFSDYRDELDSKANNE---RF 339 Query: 325 GPGLP--KISDGSM-----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 G+P D LFL H+ L+ G+AA+V+ + F + +I Sbjct: 340 FAGIPKAPPKDKDKMAIYSLFLQHIIASLKP----NGKAAVVVPTG--FITAQSGIDKKI 393 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L++N ++ +V++P+++F T + + +GKV LI+A++L I++ Sbjct: 394 REHLVKNKMLAGVVSMPSNIFATTGTNVSILFIDAN----NKGKVVLIDASNLGEKIKDG 449 Query: 438 GKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRT 472 ++ +++ ++ ++I+D++ + ++ + FS +DY Sbjct: 450 KNQKTVLSYEEEQRIIDVF-NFKDAEEGFSVAVDYDD 485 >gi|315038773|ref|YP_004032341.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112] gi|312276906|gb|ADQ59546.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112] Length = 522 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 78/431 (18%), Positives = 146/431 (33%), Gaps = 71/431 (16%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVM--------------SNIYEHLIRRFGSEVS 171 ++ A LL K + I D V + ++YE+L+ + + Sbjct: 132 KIPSAELLSKAVDSLDSIYETMDKVQKDELAQENKDRNDKPDVQGDLYEYLLSKLSTAG- 190 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 F TPR ++ + L+ +P + DP CGT GFL A ++ + Sbjct: 191 -RNGQFRTPRHIIKMMVKLM----------NPTPDDKIADPACGTSGFLVAAAEYLKNNP 239 Query: 232 SHHKI----------PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K + G +++ + M+ + + NIQ + Sbjct: 240 ETEKEIFFNREKRNYYKSDMFTGYDMDGTMLRIGAMNMMTHGI-------TNPNIQYRDS 292 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 LS + L+NPPF K D D V K +LFL Sbjct: 293 LSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLLKVC---------KTKKTELLFLAL 341 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 L++ GGR A ++ LF + IR+ L+E + +EA++++P+ +F Sbjct: 342 FLRMLKV----GGRCACIVPDGVLF--GSSRAHKAIRKQLVEENRLEAVISMPSGVFKPY 395 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--- 457 ++T + I + KV + T + KR +++D I++ + Sbjct: 396 AGVSTAILIFTKT-NHGGTDKVWFYDMTADGY---SLDDKRTKVDEDDIPDIIERFNNLD 451 Query: 458 ---SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 R+ + S +D + + E + + Sbjct: 452 EETDRKRTEKSFFVDKKEIVDNGYDLSINRYKEIEYVPVKYPPTEDILAEIMKLDDEANK 511 Query: 515 WLDILKPMMQQ 525 L LK M+++ Sbjct: 512 NLQELKNMLEK 522 >gi|323143494|ref|ZP_08078177.1| putative type I restriction-modification system, M subunit [Succinatimonas hippei YIT 12066] gi|322416779|gb|EFY07430.1| putative type I restriction-modification system, M subunit [Succinatimonas hippei YIT 12066] Length = 545 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 81/547 (14%), Positives = 187/547 (34%), Gaps = 87/547 (15%) Query: 29 TDFGKVILPFTLL-RRLECAL-EPTRSAVREKYLAFGG--------SNIDLESFVK-VAG 77 ++ V++ L + L + + E S+ + E + Sbjct: 32 NEY--VVIVQIFLYKFLNDKFIYSAKKEMPELVEDGKDIYDSLSAMSDDEYEELCDLMED 89 Query: 78 YSFYNTS---EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST-------IARL 127 N + N L+S + + + +F + + I+ L Sbjct: 90 TVILNREHLIPFVSQRRNDDNFAKILDSTMEGIASLNQEVFYIVNEDDSRVPIIHPISDL 149 Query: 128 ------EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180 +K + + S S I+E+L++ + S ++ TP Sbjct: 150 ISGGATKKNAFCKSLIDDISSFSFETIFDAGYDFFSTIFEYLLKDYNSNGGGTYAEYYTP 209 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V ++ LL+D +YDP GTG L + + + Sbjct: 210 HSVANIMARLLVDDGKD------YRSMKIYDPAAGTGTLLIALAHAIGE--------RKC 255 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYC 295 + Q++ ++ + + +++ + + ++ +G+T++ + +F + Sbjct: 256 AVYTQDISEKSSTMLMLNLILNGM-----AESLTHVIKGNTMTHPFHKDENGKLKQFDFV 310 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLEL 348 +SNPPF + ++ ++ N RF G+PKI + + F H+ + Sbjct: 311 VSNPPFKLDFSDYQNQLKT---NDPFKRFFAGVPKIPNKKKESMEIYLCFFQHVIASIRD 367 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR AIV+ + L A SG +IR++L++N ++ +V++P+++F T + Sbjct: 368 A----GRGAIVVPTGFL---TAQSGIPLKIRQYLVDNKFLKGVVSMPSNIFANTGTNVSV 420 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------- 460 + I+A+ L I++ K+ ++ + +I+ + + Sbjct: 421 VFIDKAGVNNP----IFIDASKLGDEIKDGKNKKTVLKNVDIEKIVSTFHDAKAVDELSV 476 Query: 461 ----NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + S + Y +K+ ++ E T ++ Sbjct: 477 LPSLDDIKSNNYSFSAGQYFEVKIEHIDITEEEFNQKIKEYTETLDTLFAEGKELEANIK 536 Query: 517 DILKPMM 523 LK + Sbjct: 537 TALKRLK 543 >gi|227511525|ref|ZP_03941574.1| possible site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus buchneri ATCC 11577] gi|227085259|gb|EEI20571.1| possible site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus buchneri ATCC 11577] Length = 343 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 117/293 (39%), Gaps = 45/293 (15%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDL 69 +W A DL G+ ++F IL R L ++ + + + A+ + Sbjct: 19 LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78 Query: 70 ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLE-------------SYIASFSD-NAKAI 114 + ++ + F+ + ++ N + S I S+ + K + Sbjct: 79 DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138 Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 FED D +S +RL E++ L+ K+ N + I+ H + + V+ + YE+LI +F + Sbjct: 139 FEDMDLAS--SRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAAT 196 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A + TP+ V + + L+ + +RT+YDPT G+G L ++ Sbjct: 197 AGKKAGELYTPQQVSKVLSQLVTLNREE--------VRTVYDPTMGSGSLLLRVGDYAK- 247 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + +GQEL T+ + ML+ + + + + + Sbjct: 248 ---------VAEYYGQELNGTTYNLARMNMLMHGINYSRFDLRQEILWKMISF 291 >gi|325686956|gb|EGD28980.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK72] Length = 534 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 84/435 (19%), Positives = 180/435 (41%), Gaps = 55/435 (12%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASF 107 + K +FY E +L+ + N + ++ I F Sbjct: 77 EDIGTATAQLKPEQFIETLHRKQNEDNFYEIFEATLNQIAIDNNDIFSVHTDGDTAIRLF 136 Query: 108 SDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 + + I ++ SS ++ +A LL +I F S ++E++I+ Sbjct: 137 DE--RLITDNISDSSKRNQVARAIINLLARI--KFDETIFS---QGFDFFSTLFEYMIKD 189 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + + ++ TP V + +L+ D +YDP+ G+G L + + Sbjct: 190 YNKDGGGKYAEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLAS 242 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + Q++ ++ + +L L + + NI QG+T+ + Sbjct: 243 RI--------GVDKTTVYSQDISQKS-----SNLLRLNLILNGLQHSIHNIVQGNTIIAN 289 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LF 338 ++ Y +SNPPF + + +D V E RF G+PK S M LF Sbjct: 290 RHP-EKMDYIVSNPPFKLDFSEWRDQV--ETLLDASERFFAGVPKVPAKSKDKMAIYELF 346 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H+ L+ G+AA+VL + F + IR+ L++N ++ +V++P+++F Sbjct: 347 VQHIIYSLKSD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIF 400 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T + + + +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ Sbjct: 401 ATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIK 456 Query: 459 RENGK-FSRMLDYRT 472 +E + FS + Y Sbjct: 457 KEAVEDFSVTVSYDD 471 >gi|226952351|ref|ZP_03822815.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244] gi|226836903|gb|EEH69286.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244] Length = 493 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 81/519 (15%), Positives = 173/519 (33%), Gaps = 92/519 (17%) Query: 38 FTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGY-------SFYNT-SEYSL 88 +RRL+ + + A R K + ++ + + + YNT Sbjct: 35 LLFIRRLDEIQITKEKKANRLKREVEQPIFTPEQDNLRWSKFITLGDAATLYNTMGNKVF 94 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + S T +N ++S + K F + LL K+ + + + Sbjct: 95 PFIKSLGTEDN-----TTYSHHMKD--ARF-------TIPTPALLTKVVDLIAAVPMD-- 138 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 +IYE+++ + + F TPR ++ + L+ SP T Sbjct: 139 --DKDTKGDIYEYMLGKIA--SAGRNGQFRTPRHIIKMIVELM----------SPKPTDT 184 Query: 209 LYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGML 260 + DP CGT GFL A ++ D K G + + + M+ Sbjct: 185 ICDPACGTAGFLVAASEYLNDHYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMM 244 Query: 261 IRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHK 317 + +E + I+ +LS+ ++ L+NPPF E ++ K Sbjct: 245 LHGVE-------NPRIENRDSLSEVHSHIESKYSLILANPPFAGSLDNESCAKNIQAVIK 297 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + + GGRAA+++ LF + + + Sbjct: 298 TKKTE-----------------LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHKAL 338 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 R+ ++E +EAI+++P+ +F ++T + I + + KV + + Sbjct: 339 RQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY---S 394 Query: 437 EGKKRRIIND-----DQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLR 485 KR ++ + I+ + + R+ + S ++D + Sbjct: 395 LDDKRNELDSSKHENNNIPDIIARFHNLASESGRKATEQSFLVDKIDIAANGYDLSINRY 454 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + ++ + +L ++ LK M++ Sbjct: 455 KEVVYEQVEYEAPSKILADLELLEQDILKGMNELKEMLK 493 >gi|304311154|ref|YP_003810752.1| Type I restriction-modification system methyltransferase subunit [gamma proteobacterium HdN1] gi|301796887|emb|CBL45099.1| Type I restriction-modification system methyltransferase subunit [gamma proteobacterium HdN1] Length = 475 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 88/483 (18%), Positives = 170/483 (35%), Gaps = 90/483 (18%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILP---FTLLRRLECALEPTRSAVRE 57 M + TG+ + ++L IL L+ + E Sbjct: 15 MRQDTGTGS----------DELR-----------ILQLGWMLFLKIFSD-----KDEELE 48 Query: 58 KYLAFGGSNIDLESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 S I E G + ++ L + +L + N + Sbjct: 49 LLDDSYRSPIPAELRWVEWAGDDEGMTGDELLQFVDRKLFPALSNIDLST------GNRR 102 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 A+ F++ ++ L ++ + I+ + + IYE + + + Sbjct: 103 AVLVHEVFANNYNYMKSGIHLRQVINKLNKIDF-NSSKDLHLFGQIYETFLSEL--QSAG 159 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 +F TPR + T ++ +P T+ DP CGTGGF+T + H+ S Sbjct: 160 TLGEFYTPRAITQFMTEMV----------APKQGETVLDPACGTGGFITAVIEHLKASAS 209 Query: 233 H--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288 + G E +P + + +++ + ++ +IQ G +L + L Sbjct: 210 SVAEREAIGHNVRGWEYKPLPYMLANTNLILHDI-------ITPSIQFGDSLQRPLSEYS 262 Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 R ++NPPFG V ++N + + + + LFL+ + + ++ Sbjct: 263 RKDRVDVIIANPPFG-------GVVSNNNENNFPQSY-----RTKESADLFLILMMHLMK 310 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406 GGRAAIVL L G + IR+ LLE+ + IV LP +F ++AT Sbjct: 311 D----GGRAAIVLPDGSL-TGD--GVKQRIRQKLLEDCNLHTIVRLPNSVFQPYASVATN 363 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 L + + + + + + K + I + + +V RE + Sbjct: 364 LLFFTKGEPTKNIWYY-EHKLPEGYKAY----SKTKPIQLAEFDTLKQWWVKREESDQAW 418 Query: 467 MLD 469 +D Sbjct: 419 QVD 421 >gi|296448296|ref|ZP_06890189.1| N-6 DNA methylase [Methylosinus trichosporium OB3b] gi|296254211|gb|EFH01345.1| N-6 DNA methylase [Methylosinus trichosporium OB3b] Length = 512 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 69/408 (16%), Positives = 138/408 (33%), Gaps = 70/408 (17%) Query: 38 FTLLRRLECALEPTRSAV------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 ++RL+ E E+ + G++ E + + F + + + + Sbjct: 35 LIFIKRLDEMQENEERKATTLRRKLERRIFPEGADARGEPYENLRWSRFKHFAGPEMFRI 94 Query: 92 GSTNTRNNLESYIAS----FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 + + ++ + + F S A LL K+ S IE+ Sbjct: 95 VDEHVFP-FIRALNGDGGAYARHMRD--ARFQIPS-------AQLLAKVVDKLSQIEMG- 143 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++YE+++ + + F TPR ++ L L+ P Sbjct: 144 ---DRDTKGDVYEYMLVKIA--SAGQNGQFRTPRHIIALMVELM----------QPRPED 188 Query: 208 TLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILV---PHGQELEPETHAVCVAGML 260 + DP GT GFL A ++ K+ +G + +P + M Sbjct: 189 AICDPAAGTCGFLVAAGEYLRKHHSGLFRDAKLRAHFHERLFNGFDFDPTMLRIGAMNMA 248 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + +E + N+ +L++D R+ L+NPPF + + A Sbjct: 249 LHGVE-------NANVAYRDSLAEDHSEDAGRYSLVLANPPFAGSLDYETTAA------- 294 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 R K + GGRAA+++ LF + ++RR Sbjct: 295 -DLRQIVKTKKTE-------LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSKAHKDLRR 344 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426 L+E + +EA+V LP+ +F ++T + + + V + Sbjct: 345 LLVEENKLEAVVKLPSGVFRPYAGVSTAILVFTRT-GVGGTDHVWFYD 391 >gi|315612674|ref|ZP_07887586.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315315261|gb|EFU63301.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 534 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 84/426 (19%), Positives = 180/426 (42%), Gaps = 55/426 (12%) Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFE 116 + + +FY T E +L+ + N + ++ I F + + I + Sbjct: 86 LKPDQLIETLHRQQNETTFYETFENTLNQIAIDNNDIFSVHTDGDTAIRLFDE--RLITD 143 Query: 117 DFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 SS + KA LL ++ F S ++E++I+ + + Sbjct: 144 TISDSSKRNEVAKAIINLLARV--KFDETIFS---QGFDFFSTLFEYMIKDYNKDGGGKY 198 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP V + +L+ D +YDP+ G+G L + + + Sbjct: 199 AEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI------- 244 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + Q++ ++ + +L L + + NI QG+T+ + ++ Y Sbjct: 245 -GVDKTTVYSQDISQKS-----SNLLRLNLILNGLQHSIHNIVQGNTIIANRHP-EKMDY 297 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLE 347 +SNPPF + + +D VE + E RF G+PK S M LF+ H+ L+ Sbjct: 298 IVSNPPFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLK 355 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+AA+VL + F + IR+ L++N ++ +V++P+++F T + Sbjct: 356 PD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSI 409 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 + + + V LI+A++L T ++ ++ +++ ++ ++I++ ++ +E + FS Sbjct: 410 LFIDKK----NKDDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSV 465 Query: 467 MLDYRT 472 + Y Sbjct: 466 TVSYED 471 >gi|332366399|gb|EGJ44150.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK355] Length = 534 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 84/431 (19%), Positives = 179/431 (41%), Gaps = 47/431 (10%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + K FY T E +L+ + NN + + D A Sbjct: 77 EDIGTATAQLKPEQFIETLHRKQNEDDFYETFENTLNQI---AIDNNDIFSVHTDGDTAI 133 Query: 113 AIFEDFDFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSE 169 +F++ + TI+ K + K I + ++ D S ++E++I+ + + Sbjct: 134 RLFDERLITDTISDSSKRNEVAKSIINLLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKD 193 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 ++ TP V + +L+ D +YDP+ G+G L + + + Sbjct: 194 GGGKYAEYYTPHSVAKIIADILVGHDQ-------PSNVRIYDPSAGSGTLLMNLASRI-- 244 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + Q++ ++ + L + + NI QG+T++ + Sbjct: 245 ------GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTITANRHP- 292 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHL 342 ++ Y +SNPPF + + +D V E RF G+PK S M LF+ H+ Sbjct: 293 EKMDYIVSNPPFKLDFSEWRDRV--EALPEASERFFAGVPKVPAKSKDKMAIYELFVQHI 350 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L+ G+AA+VL + F + IR+ L++N ++ +V++P+++F T Sbjct: 351 IYSLKDD----GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTG 404 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + + + +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ +E Sbjct: 405 TNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIIETFIQKEAV 460 Query: 463 K-FSRMLDYRT 472 + FS + Y Sbjct: 461 EDFSVTVSYED 471 >gi|295101714|emb|CBK99259.1| Type I restriction-modification system methyltransferase subunit [Faecalibacterium prausnitzii L2-6] Length = 510 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 62/405 (15%), Positives = 133/405 (32%), Gaps = 54/405 (13%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 +L KI + D + ++YE+++ + + F TP+ + + L+ Sbjct: 147 VLQKIITELDDL-YEHDIADLDMQGDLYEYMLGKLATAG--QNGQFRTPKHIREMMVELV 203 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQ 245 P T+ DP CGT GFL A ++ + G Sbjct: 204 ----------QPTPDDTICDPACGTAGFLVSAAEYIRNHYEDTMTSEQWEHFAGDAFTGF 253 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 + + + +++ + I ++SK +F CL+NPPF K Sbjct: 254 DTDRTMLRISAMNLMLHSI-------SHPEIDYKDSVSKQNQISDKFTMCLANPPF--KG 304 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 D +++ K + +LFL L+ G+ A ++ L Sbjct: 305 TVDAESINDNLK---------AVTNTKKTELLFLALFLRMLKKS----GQCACIVPDGVL 351 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424 F + IR+ L+EN + A++++P+ +F ++T + + + V Sbjct: 352 F--GSSKAHKAIRKELVENHQLRAVISMPSGVFKPYAGVSTAVLVFTKT-GAGGTENVWF 408 Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRI 478 + + + + KR + ++ I+ + R+ + S + + Sbjct: 409 YD---MKSDGFSLDDKRSEVAENDIPDIIKRFHHLDQEADRKRTEQSFFVPKQEIADNDY 465 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + + L + L L+ M+ Sbjct: 466 DLSINKYKKVEYVPVEYPSTAELMADLHELELEITAGLAELEEML 510 >gi|298674148|ref|YP_003725898.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303] gi|298287136|gb|ADI73102.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303] Length = 482 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 173/450 (38%), Gaps = 59/450 (13%) Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFS-STIARLEKAGLLYK-ICKNFSGIELHPDTVPD 152 N NN + + K +F+ DF + + + ++K I + S IEL+ + Sbjct: 81 NLLNNAFEELEMKNPEIKGVFDSLDFESNELGNVHHKNEIWKSIIDSLSSIELYN---EN 137 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +E L D TPR + +L LL D T+Y+P Sbjct: 138 LEPNYDFERLF------------DVFTPRKLAYLVVKLLNIDKD----------MTVYEP 175 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 C G FL + N++ +C +GQ E + + + + + + Sbjct: 176 FCTLGTFLVRSGNYIKECTGE---FDEPYLYGQSPNKE-YRLTTM-LNLYFNDFFKAQVK 230 Query: 273 SKN-IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 S N I L++D ++F L + P K W + K RF G+P Sbjct: 231 SGNLIFNPQFLTEDGDGVRKFDRVLGSYPIIKDWGYEF------AKYDPYRRFSYGVPPQ 284 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390 G ++ H+ L+ G +++ ++ L E++I++ +L+ +DLIE++ Sbjct: 285 KKGDYAYIEHMVASLKKD----GMMGVLVPNNSLSR--TNEKETKIKQLMLKRDDLIESV 338 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 ++LP + T + L I++ K EERR +V I+A+ + R R +I Sbjct: 339 ISLPPKVLRSTATSYSLLIINKNKREERRNQVLFIDASREYRP-RKTEVTRNVIKYKHID 397 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKL 507 I+ Y S ++ + + + + + +F LD + +E+D+ Sbjct: 398 NIVSTYQSFKDEDNFSSV---------VPIEKIEKHNFSLDVSSYILPEPIESDVINPND 448 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 + + ++ I+ A + K Sbjct: 449 ALSRLREIQNDKNELINNIHDTYSALNLDK 478 >gi|161870101|ref|YP_001599271.1| hypothetical protein NMCC_1140 [Neisseria meningitidis 053442] gi|161595654|gb|ABX73314.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 533 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 100/561 (17%), Positives = 205/561 (36%), Gaps = 66/561 (11%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQTKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + I+++ + +K Y + + L + FS Sbjct: 59 ENPDEPIEFINMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ + S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335 K+F + +SNPPF + +D +E E RF G+PKI Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKM 338 Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREHLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDKVVLIDASGLGEKIKDGKNQKTVLSREEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 + + ++ + FS ++ GY IK + + + ++ K Sbjct: 449 CNTFTHKQAVEDFSVVV-----GYDEIKAKNYSLSAGQYFEVKIDYVDISAEEFKQRMAG 503 Query: 512 QSFWLDILKPMMQQIYPYGWA 532 S LD L ++ Sbjct: 504 FSADLDKLFAESAKLEKEIKD 524 >gi|158520840|ref|YP_001528710.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158509666|gb|ABW66633.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 493 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 93/524 (17%), Positives = 174/524 (33%), Gaps = 83/524 (15%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ + LE + +L + D E F N + Sbjct: 34 MFFLKIFDDREAELELLEDDYQSPLPDHLRWRAWAKDPEGMTGEELADFVNAQLFP---- 89 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + ++ L+ I + + F ++ L+ ++ I+ Sbjct: 90 ---HLKDKLK--IQGLQGKRAMVIRNV-FEDAYNYMKSGTLMRQVINKICEIDF-NTQKD 142 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 +IYE +++ S + A +F TPR V + P + T+ D Sbjct: 143 RHTFGHIYEQILKDLQSAGN--AGEFYTPRAVTQFIVNRV----------DPKLSETVLD 190 Query: 212 PTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 P CGTGGFLT + H D + + G E + H +CV M++ ++ Sbjct: 191 PACGTGGFLTGTIKHKRDHYVKTTEDEKILQASISGVEKKALPHMLCVTNMILNGVD--- 247 Query: 269 RRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 +I+ +TLS KD R + ++NPPFG ++D +E Sbjct: 248 ---TPVSIRHDNTLSRPYKDYGEKDRVNVIVTNPPFGG---MEEDGIENNF--------- 292 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 P + + + LFL + L+ GGRAAIVL LF + ++ LL Sbjct: 293 PATFRTRETADLFLALIIKLLKK----GGRAAIVLPDGFLFGEGMK---TRLKETLLAEC 345 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + IV LP +F T I T L + E+ + K + + Sbjct: 346 NLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTEQIWYY-----EHPYPEGAKSYNKTKPM 400 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 ++ E + + F R+ ++ + + ++ Sbjct: 401 ----------LFEEFEPEIKWWGSEAKNFKTRKETAQ-----AWKVSAEDIVARNYNLDI 445 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548 + P + ++ Q + +++ +K+ A L Sbjct: 446 KN--PHVAEQEDRDPQKLLAQYQAQQKEIADLQDQLKAILADAL 487 >gi|327183905|gb|AEA32352.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118] Length = 522 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 77/431 (17%), Positives = 145/431 (33%), Gaps = 71/431 (16%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVM--------------SNIYEHLIRRFGSEVS 171 ++ A LL K + I D V + ++YE+L+ + + Sbjct: 132 KIPSAELLSKAVDSLDSIYETMDKVQKDELAQENKDRNDKPDVQGDLYEYLLSKLSTAG- 190 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230 F TPR ++ + L+ +P + DP CGT GFL A ++ + Sbjct: 191 -RNGQFRTPRHIIKMMVKLM----------NPTPDDKIADPACGTSGFLVAAAEYLKNNP 239 Query: 231 ---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + G +++ + M+ + + NIQ + Sbjct: 240 ETEKEIFFNKEKRNYYKSDMFTGYDMDGTMLRIGAMNMMTHGI-------TNPNIQYRDS 292 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 LS + L+NPPF K D D V K +LFL Sbjct: 293 LSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLLKVC---------KTKKTELLFLAL 341 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 L++ GGR A ++ LF + IR+ L+E + +EA++++P+ +F Sbjct: 342 FLRMLKV----GGRCACIVPDGVLF--GSSRAHKAIRKQLVEENRLEAVISMPSGVFKPY 395 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--- 457 ++T + I + KV + T + KR +++D I++ + Sbjct: 396 AGVSTAILIFTKT-NHGGTDKVWFYDMTADGY---SLDDKRTKVDEDDIPDIIERFNNLD 451 Query: 458 ---SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 R+ + S +D + + E + + Sbjct: 452 KEIDRKRTEKSFFVDKKEIVDNGYDLSINRYKEIEYVPVKYPPTEDILAEIMKLDDEANK 511 Query: 515 WLDILKPMMQQ 525 L LK M+++ Sbjct: 512 NLQELKNMLEK 522 >gi|294676867|ref|YP_003577482.1| type I restriction-modification system RcaSBIIIP subunit M [Rhodobacter capsulatus SB 1003] gi|294475687|gb|ADE85075.1| type I restriction-modification system RcaSBIIIP, M subunit [Rhodobacter capsulatus SB 1003] Length = 481 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 106/528 (20%), Positives = 175/528 (33%), Gaps = 98/528 (18%) Query: 38 FTLLRRLEC---ALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LST 90 L+ ++ ALE TR L + D E SF N + L Sbjct: 33 MFFLKIVDDQDEALELTRDDYTSPIPADLQWRAWAADPEGMTGDQLLSFVNEELFPGLKG 92 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L R + +FED ++F ++ LL ++ + I+ + Sbjct: 93 LRPATPRA----------RTIRDVFEDAYNF------MKSGQLLRQVINKINEIDF-NNL 135 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +IYE L+ + + A ++ TPR V + P + Sbjct: 136 SERQHFGDIYEQLLNDL--QNAGNAGEYYTPRAVTAFMVERI----------DPRPGEIV 183 Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP CGTGGFLT AM H+ H+ E +P H +CV ML+ +E Sbjct: 184 MDPACGTGGFLTCAMRHMRARHIRLPEHEDAMQRSLRAVEKKPLPHMLCVTNMLLNGIEE 243 Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++ +TL++ +R L+NPPFG K ++G Sbjct: 244 PHF------VRHDNTLARPLTSWTRDERVDIVLTNPPFGGKE-----------EDGIENN 286 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F + + + LFL + L+ GGRAA+VL LF ++ ++ L+ Sbjct: 287 FP--TFRTRETADLFLALIIRLLKP----GGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + IV LP +F +I T L T W EG+K Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGTPTTE---------TWFWEHRVPEGQKAY 388 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR----L 498 + R L G R +V P ++ + + L Sbjct: 389 SMTKPIRLDHLAGCADWWGG-----------ATREGRVEGP--QAWKVSAEEIKARGYNL 435 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 + + L L L + + + +KE + A+ Sbjct: 436 DIKNPHAEAEDLGDPEHL--LAALDEAEAEVTRLRAALKEILTEALAR 481 >gi|227889875|ref|ZP_04007680.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii ATCC 33200] gi|227849739|gb|EEJ59825.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii ATCC 33200] Length = 517 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 71/388 (18%), Positives = 141/388 (36%), Gaps = 55/388 (14%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V ++YE+L+ + + F TPR ++ + L+ +P + + DP Sbjct: 170 DVRGDVYEYLLGKLSTAG--RNGQFRTPRHIIKMMVELM----------NPQVTDKICDP 217 Query: 213 TCGTGGFLTDAMNHVADCGSHH---KIPPILVPH-----GQELEPETHAVCVAGMLIRRL 264 GT GFL +A + D + H G + + + ML + Sbjct: 218 AAGTAGFLVEAAEFLQDKRKEEIFYRKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGV 277 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + + NI+ +LS+ + ++NPPF K D D+V K+ Sbjct: 278 D-------NPNIEYQDSLSEQNTDRDEYSLIMANPPF--KGSLDYDSVSKDLLK------ 322 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + K +LF+ L++ GGR A ++ LF + IR+ ++EN Sbjct: 323 ---ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVLF--GSSKAHKSIRKEIIEN 373 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 + +EA++++P+ +F ++T + I + KV + T + KR Sbjct: 374 NNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYDMTADG---FSLDDKRTP 429 Query: 444 INDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 + ++ I++ + R+ S M+D + + Sbjct: 430 VKENDIPDIIERFNHLDKEVDRKKTDKSFMVDKKDIVDNDYDLSINRYKEIEYKPVEYPP 489 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ 525 E I + + L LK +++ Sbjct: 490 TEEIIAEIEKLDKEANDALQELKALLKD 517 >gi|126665400|ref|ZP_01736382.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp. ELB17] gi|126630028|gb|EBA00644.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp. ELB17] Length = 317 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 112/315 (35%), Gaps = 51/315 (16%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63 A+L IW A D+ G DF + +L R + A + Y A Sbjct: 5 QQRAALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSINYAALS 64 Query: 64 GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107 I + ++ GY Y S+ + + N+ +L + +A+ Sbjct: 65 DEVITPDIKDDAIRTKGYFIY-PSQMFANVAKNANSNESLNTDLAAIFAAIEASASGYPS 123 Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV------MS 156 D+ K +F DF +T RL +K L + K +G++ + Sbjct: 124 EDDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGHNFYEKSDAAQIDLFG 181 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + YE LI + + + +F TP+ V L L + ++ K +YDP CG+ Sbjct: 182 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGS 233 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A HV GQE+ T+ + M + + D NI Sbjct: 234 GSLLLQATKHVGPHFIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NI 282 Query: 277 QQGSTLSKDLFTGKR 291 Q G+TL F + Sbjct: 283 QLGNTLIDPHFLDDK 297 >gi|261404907|ref|YP_003241148.1| N-6 DNA methylase [Paenibacillus sp. Y412MC10] gi|261281370|gb|ACX63341.1| N-6 DNA methylase [Paenibacillus sp. Y412MC10] Length = 489 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 72/455 (15%), Positives = 154/455 (33%), Gaps = 64/455 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLG 92 +R L+ + E A G + + G S F N + + Sbjct: 35 LMFIRSLD-----EKDLESEMTEALTGETMPKVFPLDEEGQSMRWSKFKNKDPREIFNIV 89 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 T +++ + ++ A F + + + +L KI + D Sbjct: 90 GTKVFPYIKN-LNGTNETA---FSRY-MQDAMFLIPTPQVLQKIITGLDEL-YEHDIKDL 143 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE+++ + + F TP+ + + LL +P + DP Sbjct: 144 DMQGDLYEYMLGKLATSG--QNGQFRTPKHIRDMMVRLL----------APTPDDKICDP 191 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQELEPETHAVCVAGMLIRRLES 266 CGT GFL + ++ + G + + + +++ + Sbjct: 192 ACGTAGFLISSAEYIREKYEAEMTSEQWEHFAGEMFSGFDTDRTMLRLSAMNLMLHSIN- 250 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 NI ++SK T + L+NPPF D +++ K Sbjct: 251 ------QPNIDYVDSVSKQNETASEYDIVLANPPFTGTV--DAESIHDNLKT-------- 294 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + +LF+ L+ GGR A ++ LF +R+ L+EN Sbjct: 295 -ICNTKKTELLFVALFLRILQK----GGRCACIVPDGVLF--GTTKAHKSLRKELVENHQ 347 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++A++++P+ +F ++T + I + KV + + KR I Sbjct: 348 LQAVISMPSGVFKPYAGVSTAILIFTKT-DAGGTDKVWFYDMQADGY---SLDDKRSPIE 403 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 + IL+ + + + + R ++F + + Sbjct: 404 ANDIPDILNRFHN-IDAEADRKPTEQSFLVEKSVI 437 >gi|148927925|ref|ZP_01811332.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1] gi|147886728|gb|EDK72291.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1] Length = 339 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 145/383 (37%), Gaps = 59/383 (15%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 SL +W L D +G I L+ + +P G++ Sbjct: 5 SLVQKVWNYCNLLRDDGLS--YGDYLEQITYLLFLKMADEYSKP---------PFNRGTH 53 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 I + + SL L +N + + + + F + R Sbjct: 54 IPTDINWQ------------SLRNLTGSNLEAHYIEVLQNLGKQP-GMLGQIYFKAQ-NR 99 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 ++ L+++ G + V IYE L+ +F S+ GA + TPR ++ Sbjct: 100 IQNPAQLHRLVGLIDGETWV--GLDVDVKGEIYEGLLEKFASDTKTGAGQYFTPRPLIQA 157 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPIL-VP 242 T L P +T+ D GTGGF +++A+ K Sbjct: 158 MTECL----------RPEPSKTMADFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTF 207 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 G E+ P T +C+ + + + D I +L+ D +GKRF Y L NPPFG Sbjct: 208 TGNEIVPATARLCLMNLFLHNI---GDMDSKPPIHLTDSLASD--SGKRFDYILMNPPFG 262 Query: 303 KKWE--KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 KK + + ++ R S+ + F+ H+ ++L++ G+AA+++ Sbjct: 263 KKSSITVSNEDGTQSKESLTYERQDFWTT-TSNKQLNFVQHICSQLKVD----GKAAVIV 317 Query: 361 SSSPLFNGRAGSGESEIRRWLLE 383 + LF G A GE+ IR+ LL+ Sbjct: 318 PDNVLFEGGA--GET-IRKKLLQ 337 >gi|311109506|ref|YP_003982359.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans A8] gi|310764195|gb|ADP19644.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans A8] Length = 492 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 83/464 (17%), Positives = 164/464 (35%), Gaps = 87/464 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLG 92 ++RL+ +VREK A G I+ F ++ + +L L Sbjct: 35 LLFIKRLDEIH-----SVREKKAARLGKPIEEPVFSPEQQNLRWSVFKQLGDAATLYDLV 89 Query: 93 STNT---RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + L ++++ + K F + LL K+ I + Sbjct: 90 ANQVFPFIKTLGEADSTYATHMKD--ARF-------TIPSPALLAKVVDMLDAIPMD--- 137 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++YE+++ + + F TPR ++ L ++ +P T+ Sbjct: 138 -DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIKLMVEMM----------APKPADTI 184 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLI 261 DP CGT GFL A ++ + K HG + + V ML+ Sbjct: 185 CDPACGTAGFLVAAAEYLQHHHRNEIYTDQASAKRFNHDTFHGFDFDSTMLRVGSMNMLL 244 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + I+ +LS+ + +F L+NPPF + + A + + Sbjct: 245 HGVE-------NPAIENRDSLSESHAGVEGQFSLILANPPFAGSLDYESTAQDLQRMV-- 295 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 K +LFL L+ GGRAA+++ LF + +R+ Sbjct: 296 ---------KTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKTLRQM 340 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E ++AI+++P+ +F ++T + + + + +V + + Sbjct: 341 LVEEQKLDAIISMPSGVFRPYAGVSTAVMLFTKTNSG-GTDRVWFYDMRADGY---SLDD 396 Query: 440 KRRIIND-----DQRRQILDIYVS------RENGKFSRMLDYRT 472 KR ++ D IL + + RE + S ++ Sbjct: 397 KRNELDHAKHENDNLPDILSRWQNQSREAGRERTEQSFLVPKDE 440 >gi|327490536|gb|EGF22317.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK1058] gi|332362946|gb|EGJ40735.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK49] Length = 534 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 94/542 (17%), Positives = 207/542 (38%), Gaps = 73/542 (13%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAFGGSNIDL--ESFVKVAGYSFY 81 + ++ +L + L + L AV K Y ++D + + Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQ 85 Query: 82 NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123 E + TL +N E+ + + + IF E + Sbjct: 86 LKPEQFIETLHRKQNEDNFYEIFETTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDNI 145 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 ++ + I + I+ S ++E++I+ + + ++ TP Sbjct: 146 SDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + +L+ D +YDP+ G+G L + + + Sbjct: 206 SVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKTT 250 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 + Q++ ++ + L + + NI QG+T+ + ++ Y +SNPPF Sbjct: 251 VYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPPF 304 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGGG 354 + + +D VE + E RF G+PK S M LF+ H+ L+ G Sbjct: 305 KLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD----G 358 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + F + IR+ L++N ++ +V++P+++F T + + + Sbjct: 359 QAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK- 415 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ +E + FS + Y Sbjct: 416 ---NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYDDI 472 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQQIYPY 529 + + +D + E + KLS L Q + + + +Q+ Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQSH-ALEQEIEEQMKGL 531 Query: 530 GW 531 + Sbjct: 532 KY 533 >gi|126179042|ref|YP_001047007.1| N-6 DNA methylase [Methanoculleus marisnigri JR1] gi|125861836|gb|ABN57025.1| N-6 DNA methylase [Methanoculleus marisnigri JR1] Length = 505 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 81/520 (15%), Positives = 176/520 (33%), Gaps = 85/520 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RLE ++ R + + + + E + + + Y + + + R Sbjct: 36 LIFMKRLEDMDGVEQNRARARGVPYTSVFEEHEE-CRWSSWKHYPAEQMLV------HVR 88 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + + +I S + K +F + + K LL + + + + Sbjct: 89 DKVFPFIQSLHNGEKTLFAQ-QMRDAVFMIPKPSLLQEAVALIDEMNIT--AQNRDTQGD 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE+L+ + + F TPR ++ + L+ P + + DP CGT Sbjct: 146 IYEYLLSQLSTAGK--NGQFRTPRHIIRMIVELV----------DPDITDRICDPACGTA 193 Query: 218 GFLTDAMNHVADCG-------------------------SHHKIPPILVPHGQELEPETH 252 GFL ++ H+ H + +G + + Sbjct: 194 GFLINSYEHIIRKYTSPDLLEVDDEGEYHNLIGDNITDQKHWEKLWSDTFYGFDFDSTMT 253 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + + +++ ++ + +I+ TLSK +R+ L+NPPF Sbjct: 254 RISLMNLMLHGIK-------APHIELKDTLSKRYTEEERYTVVLANPPFKGSI------- 299 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 K+ G K +L + + L GG+ +++ LF + Sbjct: 300 ---DKSDINDSLSLGTTKT---ELLLVERMIQLL----TIGGKCGVIVPDGVLF--GSSR 347 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431 E+RR LLE + +E IV++P+ +F ++T + I + GKV + Sbjct: 348 AHKELRRMLLEENQLEGIVSMPSGIFKPYAGVSTAVLIFVKG---GKTGKVWFYDMEADG 404 Query: 432 TSIRNEGKKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490 + KR I+ I++ + R + D + + + V ++ L Sbjct: 405 Y---SLDDKRTFIDGKGDIPDIIERFRERRDT---NPTDRKAKCFY-VPVEEIQANNYDL 457 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 + +E + + + + + Q + Sbjct: 458 SISRYKEIEYEEVEYEPPEVIIDKIQALESQIQQNLEELK 497 >gi|32477069|ref|NP_870063.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1] gi|32447617|emb|CAD79218.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1] Length = 552 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 153/431 (35%), Gaps = 65/431 (15%) Query: 35 ILPFTLLRRLECA--LEPTRS----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 I ++RL+ LE ++ E + G + S+ + F + + Sbjct: 72 ITYLLFIKRLDDLHTLEENKANRTKKPMENRIFPEGKDEKKRSYEDLRWSRFKHFEPKEM 131 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + L + S K + LL ++ + + Sbjct: 132 FDVVNEHVFPFLRTLGGDGSTYTK------HMKDARFTIPTPALLARVVDMIDQVPME-- 183 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++YE+++ + + F TPR ++ L L + P Sbjct: 184 --DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIELMVELTV----------PTPTDV 229 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP CGT GFL A ++ + K + HG + + + ML+ Sbjct: 230 ICDPACGTAGFLVVAGEYLREKHPEVLRDAKLKKHFHGDMFHGFDFDSTMLRIGSMNMLL 289 Query: 262 RRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + +I +L+++ +R+ L+NPPF + + A + Sbjct: 290 HGVE-------NPDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAKDL------ 336 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + K +LFL L+ GGRAAI++ LF + +R+ Sbjct: 337 -----LQIVKTKKTELLFLTLFLRLLKP----GGRAAIIVPDGVLF--GSSKAHKTLRKM 385 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E+ ++ I+++P +F ++T + + + + + V + + ++ Sbjct: 386 LVEDQKLDGIISMPGGVFKPYAGVSTAIVLFTKTNSGGTK-HVWFYD---MQADGKSLDD 441 Query: 440 KRRIINDDQRR 450 KR + +++ Sbjct: 442 KRTELLPPEKQ 452 >gi|257437917|ref|ZP_05613672.1| putative type I restriction-modification system, M subunit [Faecalibacterium prausnitzii A2-165] gi|257199577|gb|EEU97861.1| putative type I restriction-modification system, M subunit [Faecalibacterium prausnitzii A2-165] Length = 510 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 72/477 (15%), Positives = 152/477 (31%), Gaps = 94/477 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +R L+ + E + G ++ AG S S ++R Sbjct: 35 LMFIRSLD-----EKELATEDFENMAGEKMEHIFPASAAGQS------MRWSRFKDKDSR 83 Query: 98 NNLESYIASFSDNAKAI----FEDFDFSSTIARLEKA----------------------- 130 + K + DFD + + +E Sbjct: 84 EIFLTMQQRVFPAIKKMKYGRLPDFDANGELVEIEDDPTRPDEGNTAFARYMDDAMFLIP 143 Query: 131 --GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +L KI + D + ++YE+++ + + F TP+ + + Sbjct: 144 TPQVLQKIITGLEDL-YTHDIADLDMQGDLYEYMLLKLS--SAGRNGQFRTPKHIRDMMV 200 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH----- 243 L+ P + DP CGT GFL + ++ Sbjct: 201 ELV----------QPTPDDFICDPACGTAGFLVSSAQYLRAHYEDSMTSEQWQHFAGPMF 250 Query: 244 -GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 G +++ + +++ + + I ++SK ++ CL+NPPF Sbjct: 251 TGFDMDRTMLRISAMNLMLHSI-------TNPEIDYKDSVSKQNSICSKYTICLANPPF- 302 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K D +++ + K + +LFL L+ GGR A ++ Sbjct: 303 -KGTVDAESINDDLK---------AVTNTKKTELLFLALFLRMLKT----GGRCACIVPD 348 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421 LF + IR+ L+EN + A++++P+ +F ++T + + + K Sbjct: 349 GVLF--GSSKAHQSIRKELIENHQLRAVISMPSGVFKPYAGVSTAVLVFTKT-GAGGTDK 405 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY------VSRENGKFSRMLDYRT 472 V + + + KR + ++ I+ + R+ + S + Sbjct: 406 VWFYD---MKADGFSLDDKRTEVKENDIPDIIARFQNLDAETDRKCTEQSFFVPKEE 459 >gi|148976555|ref|ZP_01813251.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3] gi|145964131|gb|EDK29388.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3] Length = 542 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 82/471 (17%), Positives = 178/471 (37%), Gaps = 74/471 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 ++F +I L + L + K + + Sbjct: 29 DASEFK-IITQVFLYKLLNDKFTYETKQIEPKLASSDNWEQAFIALSDDEREMLAMQLPA 87 Query: 87 SLSTLGSTN------TRNNLESYIASFSDNAKAI--------------------FEDFDF 120 + L + + N + F D + I FE Sbjct: 88 DAAELKQEHFISTLFAKQNEADFAKLFDDTLRDISMLNSDTFSVMTDSGEKVALFESISE 147 Query: 121 SSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 T+++ + + FS + + I+E+LI+ + S ++ T Sbjct: 148 YVTVSKRDDFCRAIINSLAEFSFERIFTQKYDFYAV--IFEYLIKDYNSNSGGKYAEYYT 205 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P V + +L+ + + + YDP+ G+G L + + + + Sbjct: 206 PHAVARIMANILVPEEQ----QGKISNVSCYDPSAGSGTLLMNVAHAIGE--------SR 253 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295 Q++ ++ + L + N+ +G T+ K+F Y Sbjct: 254 CSIFTQDISKKSSNLLR-----LNLILNNLVHSIPNVIEGDTMRHPHHKDGAALKQFDYI 308 Query: 296 LSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLE 347 +SNPPF + + + +E KEHK RF G+PK+ + LFL H+ + L+ Sbjct: 309 VSNPPFKLDFSEIHEELEGKEHKK----RFFAGVPKVPAKAKDKMAIYQLFLQHIIHSLK 364 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+AA+V+ + + A S + +IR+ L++N ++ +V++P+++F T + Sbjct: 365 E----NGKAAVVVPTGFI---TAKSIDMKIRKHLIDNKMLAGVVSMPSNIFATTGTNVSI 417 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + +G V L++A++L T I+ ++ +++D + +QI++++ + Sbjct: 418 LFID----ACNKGDVVLVDASNLGTKIKEGKNQKTVLSDLEEQQIIEVFNN 464 >gi|312278102|gb|ADQ62759.1| Putative HsdM [Streptococcus thermophilus ND03] Length = 534 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 98/512 (19%), Positives = 203/512 (39%), Gaps = 64/512 (12%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFV----KVAGYSFYNTSEYSLSTLGSTN--- 95 RL E + E + K FY T E +L+ + N Sbjct: 63 RLVSMSEEDYDWLLEDIGTSTAWMKPNQFIETLHRKQNESDFYETFENTLNQIAIDNNDI 122 Query: 96 --TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVP 151 + ++ I F + + I + SS + KA LL ++ F Sbjct: 123 FSVHTDGDTAIRLFDE--RLITDTISDSSKRNEVAKAIINLLARV--KFDETIFS---QG 175 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 S ++E++I+ + + ++ TP V + +L+ D +YD Sbjct: 176 FDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGNDQ-------PSNVRIYD 228 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P+ G+G L + + + + Q++ ++ + L + + Sbjct: 229 PSAGSGTLLMNLASRI--------GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQH 275 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK- 330 NI QG+T+ + ++ Y +SNPPF + + +D VE + E RF G+PK Sbjct: 276 SIHNIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDQVETLPEASE--RFFAGVPKV 332 Query: 331 --ISDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 S M LF+ H+ L+ G+AA+VL + F + +IR+ L++N Sbjct: 333 PAKSKDKMAIYELFVQHIIYSLKPE----GQAAVVLPTG--FITAQSGIDKKIRQHLVDN 386 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 ++ +V++P+++F T + + + +G V LI+A++L T ++ ++ ++ Sbjct: 387 QMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVL 442 Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503 + ++ ++I++ ++ +E + FS + Y + + +D + E D Sbjct: 443 SPEEEQKIVETFIKKEAIEDFSVTVSYEDIKEKNYSLSAGQYFDIKIDYVDITAEEFDAK 502 Query: 504 W----RKLSPLHQSFWLDILKPMMQQIYPYGW 531 KLS L Q + + + +Q+ + Sbjct: 503 MTAFQDKLSDLFQQSH-ALEQEIEEQMKGLKY 533 >gi|218690008|ref|YP_002398220.1| putative HsdM; type I restriction modification enzyme methylase subunit [Escherichia coli ED1a] gi|330000674|ref|ZP_08303787.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3] gi|218427572|emb|CAR08468.2| putative HsdM; type I restriction modification enzyme methylase subunit [Escherichia coli ED1a] gi|328537910|gb|EGF64096.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3] Length = 557 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 87/551 (15%), Positives = 181/551 (32%), Gaps = 100/551 (18%) Query: 35 ILPFTLLRRLECA---LEPTRSAVREKY-LAFGGSNIDLESFVKVAGYSFYN---TSEYS 87 I ++RL+ + EKY F G+ I E + T +S Sbjct: 34 ITYLLFMKRLDELDHKRQDEGETSGEKYISKFAGTWIPPEERNRPVAEQHPIDKRTLRWS 93 Query: 88 -LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIE 144 L ++ + F + +F + + + K+ LL + K I Sbjct: 94 EFKKLQPEEMLQHVRDKVFPFLKDLNGAESNFTHHMKNAVFIIPKSALLVEAVKAIDEIF 153 Query: 145 LHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + ++YE L+ + F TPR ++ L L+ Sbjct: 154 EMMKRDSQEKGQAFQDIQGDVYEFLLSEIATAGK--NGQFRTPRHIIKLMADLV------ 205 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVA----------------------------- 228 P + + + DP CGTGGFL A ++ Sbjct: 206 ----QPQLGQRIADPACGTGGFLLGAYQYILTQLSLSQNLKRDNSKGSTHDEDGFFRTSV 261 Query: 229 --DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +I +G +++ + + +++ ++ +I TLSK Sbjct: 262 TAALTKKARILLQESLYGYDIDATMVRLGLMNLMMHGID-------EPHIDYQDTLSKSY 314 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 ++ L+NPPF D+ + + K + +LF+ ++ L Sbjct: 315 SEETKYDIVLANPPFTGSI--DRGDINENLKL-----------STTKTELLFVENIYRLL 361 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405 + GG A +++ LF +G E+R+ L+E ++A++ LP+ +F ++T Sbjct: 362 KK----GGTACVIVPQGVLF--GSGKAFKELRQTLVERCDLKAVITLPSGVFKPYAGVST 415 Query: 406 YLWILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIIN-DDQRRQILDIYVS 458 + + S + ++ V + + KR + + I+ Y S Sbjct: 416 AILLFSKVFGPGDKISKPATDYVWFYEMSSDGY---SLDDKRNKLEGYGDLQDIIQKYHS 472 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITWRKLSPLHQSFWL 516 R+ + F RI + + ++ + L L Q+ Sbjct: 473 RDEASDTDRTAKC-FMVPRIDIEAENYDLSLSRYKEEIFEEVQYEQPEAILERLIQAEVG 531 Query: 517 DILKPMMQQIY 527 ++ K ++ ++ Sbjct: 532 NVDKKVLNKVQ 542 >gi|311113527|ref|YP_003984749.1| type I restriction-modification system DNA-methyltransferase [Rothia dentocariosa ATCC 17931] gi|310945021|gb|ADP41315.1| type I restriction-modification system DNA-methyltransferase [Rothia dentocariosa ATCC 17931] Length = 502 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 81/519 (15%), Positives = 171/519 (32%), Gaps = 77/519 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFVKVAG-----YSFYNTSEYSL 88 I +R L+ E R + N + + + ++F N S ++ Sbjct: 32 ITYLLFVRFLDD--EQLRQEEMANSIRVHDPNYVLEDPVFRPEDENLRWHNFKNESPAAM 89 Query: 89 STLGSTNT---RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 + L + + S + + F + LL K+ S I + Sbjct: 90 YETVANGVFPFIKGLGARLGGESSSYTQHMREARF-----TIPTPALLAKVVDPLSAIPM 144 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 +IYE+++ + + F TPR ++HL ++ +P Sbjct: 145 D----DRDTNGDIYEYMLSKIAASG--TNGQFRTPRHIIHLMVDMV----------APTA 188 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAG 258 T+ DP CGT GFL A +V + + + HG + + + Sbjct: 189 ADTICDPACGTAGFLVAANEYVREHSVQELTNTVALRHYHNDMFHGFDFDSTMLRIASMN 248 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 +L+ +++ ++ +LS+ +++ L+NPPF + ++ A Sbjct: 249 LLMHGVKNPL-------VEYRDSLSEGAAGESEKYSLILANPPFTGSIDYEQTA------ 295 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 R K +LFL L+ GGRAA ++ LF + + ++ Sbjct: 296 -----RDLQSTVKTKKTELLFLALFLRLLKP----GGRAAAIVPDGVLF--GSSTAHKKL 344 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN--ATDLWTSI 434 R+ L+E+ ++A+V+LP+ +F ++T + + + V + A Sbjct: 345 RKMLVEDQKLDAVVSLPSGVFKPYAGVSTAILFFTKTNSG-GTDDVWFYDVQADGFSLDD 403 Query: 435 RNEGKKRRIINDDQR---------RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485 + K + D + Q R + S + + + Sbjct: 404 KRAPVKANDLPDVLKRWTALRGDDEQAAKAEHERARTEQSFCVPKSEIAEQGYDLSLNRY 463 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ I + + LK +++ Sbjct: 464 KEIQYEEVEYRSPTEIIAELENLDEQIRVSMAELKELLK 502 >gi|322386251|ref|ZP_08059883.1| type I restriction-modification system DNA-methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269713|gb|EFX52641.1| type I restriction-modification system DNA-methyltransferase [Streptococcus cristatus ATCC 51100] Length = 536 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 83/426 (19%), Positives = 179/426 (42%), Gaps = 55/426 (12%) Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFE 116 + + +FY E +L+ + N + ++ I F + + I + Sbjct: 86 LKPDQLIESLHRQQNEATFYEIFENTLNQIAIDNNDIFSVHTDGDTAIRLFDE--RLITD 143 Query: 117 DFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 SS + KA LL ++ F S ++E++I+ + + Sbjct: 144 TISDSSKRNEVAKAIINLLTRV--KFDETIFS---QGFDFFSTLFEYMIKDYNKDGGGKY 198 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP V + +L+ D +YDP+ G+G L + + + Sbjct: 199 AEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI------- 244 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + Q++ ++ + L + + NI QG+T+ + ++ +Y Sbjct: 245 -GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMNY 297 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLE 347 +SNPPF + + +D VE + E RF G+PK S M LF+ H+ L+ Sbjct: 298 IVSNPPFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLK 355 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G+AA+VL + F + IR+ L++N ++ +V++P+++F T + Sbjct: 356 SD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSI 409 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 + + +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ +E + FS Sbjct: 410 LFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSV 465 Query: 467 MLDYRT 472 + Y Sbjct: 466 TISYED 471 >gi|281177459|dbj|BAI53789.1| conserved hypothetical protein [Escherichia coli SE15] Length = 545 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 81/509 (15%), Positives = 179/509 (35%), Gaps = 71/509 (13%) Query: 3 EFTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREK 58 EF +L + + A G+ +F +I L + L + Sbjct: 5 EFRDKTKALIDSLKSICANYGLGN-DGNEFK-IITQAFLYKFLNDKFAFEAKQKDKSIAS 62 Query: 59 YLAFGG----------SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 ++ + A ++ Y + + + + + + Sbjct: 63 AESWEDALSAMSEDQLKKLQQRMAPDTARLKPHHFIRYLYNRQNAADFARTFDDTLMDIA 122 Query: 109 DNAKAIF--------EDFDFSSTIARLEK----AGLLYKICKNFSGIELHPDTVPDRVM- 155 +F + F + I + Sbjct: 123 ATNNDVFAVKTDGGAKVVLFERLSQYIADESKRDDFCRAIINKLADFSFERIFTQKFDFY 182 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + I+E+LI+ + S ++ TP V + +L+ + + YDP+ G Sbjct: 183 ATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMAEILVPKAQQGVVRN----VSCYDPSAG 238 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L + + + + Q++ ++ ++ L + N Sbjct: 239 SGTLLMNVAHAIGE--------DRCSIFAQDISQKSSSLLR-----LNLILNNLVHSIPN 285 Query: 276 IQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + QG+T+ KRF Y +SNPPF + +DA++ + RF G+PKI Sbjct: 286 VIQGNTILHPFHKDGGALKRFDYIVSNPPFKMDFSDFRDALDSKENQQ---RFFAGIPKI 342 Query: 332 SDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + LFL H+ L+ GG+AA+V+ + F + IR L++N Sbjct: 343 KAKARDKMEIYQLFLQHIIFSLKP----GGKAAVVVPTG--FITAQSGIDKGIREHLVQN 396 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 ++ +V++P+++F T + + + KV LI+A++L +++ ++ ++ Sbjct: 397 KMLAGVVSMPSNIFATTGTNVSILFID----ASNKEKVVLIDASNLGEKVKDGKNQKTVL 452 Query: 445 NDDQRRQILDIYVS-RENGKFSRMLDYRT 472 + + ++I + + + FS ++ Y Sbjct: 453 TECEEKRICEAFNNKWSEEDFSVVVSYDD 481 >gi|294676509|ref|YP_003577124.1| type I restriction-modification system RcaSBIP subunit M [Rhodobacter capsulatus SB 1003] gi|294475329|gb|ADE84717.1| type I restriction-modification system RcaSBIP, M subunit [Rhodobacter capsulatus SB 1003] Length = 489 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 93/490 (18%), Positives = 160/490 (32%), Gaps = 80/490 (16%) Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 K N+ ++ G L LG+++ + N K +F D Sbjct: 52 KLEERLPPNLRWGELKRLEGEQRLIRYRAMLLELGTSD-KFNF--------PLVKQVFTD 102 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 L KA L + ++ + + + ++YE L+ R SE A + Sbjct: 103 AK-----TSLTKATALTSLITTIDTVDWY--AAEEDGLGDLYEGLLERTTSERKSKAGQY 155 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR ++ L+ P + + DP GTGGFL A + Sbjct: 156 FTPRPLIETIIHLM----------KPKVGEVIQDPAAGTGGFLIAAHRAIMRDTDDLTTV 205 Query: 238 PILVPHGQE--------LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 P V Q L TH + +L+ ++ I L+ D Sbjct: 206 PKDVAFAQRNGKYQGAELITGTHRLNTMNLLLHGIDQP--------IDPIDALTSDAKKF 257 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 L+NPPF + + + R G + F+ H+ L++ Sbjct: 258 DPADLILTNPPFN---KFPESVARDDFVITAEAR---------KGPLPFVEHVIRGLKV- 304 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GGRAAIV+ + LF S ++R W+++ + I+ LPT +F+ + T + Sbjct: 305 ---GGRAAIVVPDNTLFE---DSMGRDLRNWMMDLCDLHTILRLPTGIFYAQGVKTNVIF 358 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD--------------- 454 L+ K+EER G + + DL + N GK R + D I Sbjct: 359 LTK-KSEERVGATKAVWFYDLRAQMPNFGKTRTLTTADFEPFIAAYGDDPHGKSPRIDEG 417 Query: 455 ---IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 + + S+ D + R V D A + + Sbjct: 418 EAGRFRKFTRDEISKRNDNLDVTWLRDDVEVVEEGLTEPDDIASAIIGHLRAALEEIEAV 477 Query: 512 QSFWLDILKP 521 ++ + Sbjct: 478 ADELAEVAEA 487 >gi|32477086|ref|NP_870080.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1] gi|32447634|emb|CAD79235.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1] Length = 552 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 152/431 (35%), Gaps = 65/431 (15%) Query: 35 ILPFTLLRRLECA--LEPTRS----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 I ++RL+ LE ++ E + G + S+ + F + + Sbjct: 72 ITYLLFIKRLDDLHTLEENKADRTKKPMENRIFPEGKDEKKRSYEDLRWSRFKHFEPKEM 131 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + L + S K + LL ++ + + Sbjct: 132 FDVVNEHVFPFLRTLGGDGSTYTK------HMKDARFTIPTPALLARVVDMIDQVPME-- 183 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++YE+++ + + F TPR ++ L L +P Sbjct: 184 --DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIELMVEL----------TAPTPTDV 229 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP CGT GFL A ++ + K + HG + + + ML+ Sbjct: 230 ICDPACGTAGFLVVAGEYLREKHPEVLRDAKLKKHFHGDMFHGFDFDSTMLRIGSMNMLL 289 Query: 262 RRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + +I +L+++ +R+ L+NPPF + + A + Sbjct: 290 HGVE-------NPDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAKDL------ 336 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + K +LFL L+ GGRAAI++ LF + +R+ Sbjct: 337 -----LQVVKTKKTELLFLTLFLRLLKP----GGRAAIIVPDGVLF--GSSKAHKTLRKM 385 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E+ ++ I+++P +F ++T + + + + V + + ++ Sbjct: 386 LVEDQKLDGIISMPGGVFKPYAGVSTAIVLFTKTNSG-GTEHVWFYD---MQADGKSLDD 441 Query: 440 KRRIINDDQRR 450 KR + +++ Sbjct: 442 KRTELLPPEKQ 452 >gi|218440827|ref|YP_002379156.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] gi|218173555|gb|ACK72288.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] Length = 356 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 64/367 (17%), Positives = 124/367 (33%), Gaps = 52/367 (14%) Query: 6 GSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 ++ +W+ A+ L + + ++ ++ LR + + + G Sbjct: 5 EQIEAIERRLWEAADTLRSNSNYASNEYFIPVMGLIFLRHAYSRFLKVKEEIEKNLPKRG 64 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDN---AKAIFE 116 G L + + E L + L + + S ++ + I Sbjct: 65 GKTRPLTKEDFSQKTAIFLKPEAQFDYLVSLKQDEDHSQALITAMESIEEDYQSLQGILP 124 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 ++ +L K+ + + + IYE+ + +F + + + Sbjct: 125 KAEYQDL-----DNEVLAKLLRTLN--PDELKVADGDIFGRIYEYFLTQFANLKAHDNGE 177 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L +L ++DP CG+GG + + V HK Sbjct: 178 FFTPISLVTLIANILEPDQG-----------IIFDPACGSGGMFVQSAHFVE---KQHKN 223 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYC 295 P +L G E P T + + + LE D IQ+ T +D F + + Y Sbjct: 224 PQMLTFRGLEKNPTTIRLAKMNLAVHGLEGD--------IQKAITYYEDPFQMEGKADYV 275 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELP 349 ++NPPF K + R GLP K+S+G+ L++ + + L Sbjct: 276 MANPPFNVDE-------VDADKVKKDSRLPFGLPGTNKNKKVSNGNYLWISYFYSYLNER 328 Query: 350 PNGGGRA 356 G Sbjct: 329 GKAGFVM 335 >gi|313682025|ref|YP_004059763.1| n-6 DNA methylase [Sulfuricurvum kujiense DSM 16994] gi|313154885|gb|ADR33563.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994] Length = 495 Score = 163 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 100/541 (18%), Positives = 187/541 (34%), Gaps = 87/541 (16%) Query: 12 ANFIWKNAEDLWGDFK----HTDFGKVILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64 + I + + L D + + I L+ L + + Y Sbjct: 2 ESKINRITDILRRD-DGISGAMHYTEQISWILFLKFLNDLEDSKADEALLIGKDYNYILD 60 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----------I 114 ++ + L SY+ F + + I Sbjct: 61 DKFKWSNWAVPKVNGKIDLINAKSGADLLDFVNKELFSYLKGFKNITEDPKSIKYKIGAI 120 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 FE D R+ + +I ++ H + +S IYE L++ GS+ + Sbjct: 121 FEYLD-----NRIANGHTIREILDIIDELDFH-NQSDLFQLSIIYEKLLKDMGSDGG-NS 173 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +F TPR ++ + T ++ +P + +T+YDP G+ GFL +A NH+ + Sbjct: 174 GEFYTPRPLIKVMTDVV----------NPQVGQTIYDPAVGSCGFLIEAYNHIRYLDAKE 223 Query: 235 KIPPI-----------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 G E P ++ + V M++ +E S NI + +TL+ Sbjct: 224 NKQRDISVNQLKFLSEDTFFGNEKTPLSYVMGVMNMILHGIE-------SPNISKTNTLT 276 Query: 284 KD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFL 339 KD L R+ L+NPPFG K ++ P S+ +LFL Sbjct: 277 KDIRGLEEKDRYDIILANPPFGGKEKEQIQQNF---------------PIKSNATELLFL 321 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 H+ N L++ GR +V+ LF + + +++ LLE + I++LP+ +F Sbjct: 322 QHMMNSLKV----NGRCGVVIPEGVLF--QTNNAFQAVKQELLERFNVHTILSLPSGVFL 375 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + + T + + + L K + I D + L ++ Sbjct: 376 PYSGVKTNVIFFDRNGS---TSDIFYYEVNPLSKLT-----KNKPITYDHFTEFLAVWKE 427 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 R+ S +++ I P R I K+ + +E + + I Sbjct: 428 RKITDNSWIVNINDIKDFDISAKNPNRNETIDHKSPIELVENIKLNNEEINDLMNEIEAI 487 Query: 519 L 519 L Sbjct: 488 L 488 >gi|260906089|ref|ZP_05914411.1| N-6 DNA methylase [Brevibacterium linens BL2] Length = 490 Score = 163 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 80/458 (17%), Positives = 155/458 (33%), Gaps = 66/458 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 I +RRL+ T++ R + + E + + N + + Sbjct: 36 ITYLLFIRRLDEL--ETQAESRASFTGKAVENPTFGPREQDFRWSRLR--NLEPEVMYDV 91 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 S L + D F + A LL K+ S I + Sbjct: 92 VSDGVFPFLRK-LGGDGSTYGEHMRDARF-----TVPSAHLLSKVVDLLSDIPMDKRDTN 145 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 ++YE+L+ + S F TPR ++ L + +P + D Sbjct: 146 ----GDLYEYLLSQISSSG--TNGQFRTPRHIIDLMVKM----------SAPRPDDEICD 189 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRL 264 P CGT GFL A + + HG + + + ML+ + Sbjct: 190 PACGTAGFLVAASEQLRESHPEVFTNKEQRHFFHNSMFHGYDFDSTMLRIGSMNMLLHGI 249 Query: 265 ESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 E +I+ +LS++ +++ L+NPPF ++ E + +L R Sbjct: 250 E-------QPDIRYRDSLSENVSAEAEKYTLILANPPFAGS-------LDYEATSQDLQR 295 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + K + GGRAA+++ LF + E+RR L+E Sbjct: 296 ----VVKTKKTE----LLFLALFLKLLKPGGRAAVIVPDGVLF--GSSKAHKELRRMLVE 345 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 ++ +V LP+ +F ++T + + + V + + KR Sbjct: 346 EQKLDGVVKLPSGVFKPYAGVSTAILFFTKTNSG-GTENVWFYDVRADG---FSLDDKRN 401 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 I + Q+L+ + R+ + R ++F + ++ Sbjct: 402 PIEANDLPQVLERWTERDGTEKDRARTEKSFTVPKSEI 439 >gi|116250871|ref|YP_766709.1| type I restriction enzyme modification methylase subunit [Rhizobium leguminosarum bv. viciae 3841] gi|115255519|emb|CAK06596.1| putative type I restriction enzyme modification methylase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 411 Score = 163 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 82/443 (18%), Positives = 152/443 (34%), Gaps = 84/443 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63 +A ++ +W+ L + + + L L+ + A R + Sbjct: 2 NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMM---------AERNRETGSL 50 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLG-----------------STNTRNNLESYIAS 106 ++ V+ G + +L TLG T + + Y + Sbjct: 51 PRSMRWADLVQANGLAKLELYRKTLVTLGTVSTRLGKDDALVLPPGENATPDERKRYADA 110 Query: 107 --FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + + I F + + + L + ++ + ++YE L++ Sbjct: 111 RPLPEMVQEI-----FDNASTFIREPQNLTTLVTAIDELDWFSE--DRDQFGDLYEGLLQ 163 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + E GA + TPR ++ L L+ P + DP GTGGFL A Sbjct: 164 KNAEETKRGAGQYFTPRVLIELLVRLM----------QPKPGEVIQDPAAGTGGFLIAAD 213 Query: 225 NHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 ++ + HG E P T + + + + ++SD ++ Sbjct: 214 RYMRAVTDNYFDLGRKQQEFQKRHAFHGMENVPGTLRLLLMNLYLHNIDSD-------HV 266 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G TLS R + L+NPPFG +S + Sbjct: 267 DLGDTLSDKGKGLGRANLILTNPPFGPAGGAPTRDDLSV------------TATVSSYQL 314 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F+ H L+ GGRAAIV+ + LF G ++R+ +++ + I+ LPT Sbjct: 315 PFVEHCIRALQP----GGRAAIVVPDNVLFEDGRG---RQLRQMMMDWCDVHTILRLPTG 367 Query: 397 LFFRTNIATYLWILSNRKTEERR 419 +F+ + T + L+ KTE Sbjct: 368 IFYAQGVKTNVIFLTRAKTETGT 390 >gi|302035529|ref|YP_003795851.1| type I restriction endonuclease, M subunit [Candidatus Nitrospira defluvii] gi|300603593|emb|CBK39923.1| Type I restriction endonuclease, M subunit (modular protein) [Candidatus Nitrospira defluvii] Length = 647 Score = 163 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 107/638 (16%), Positives = 203/638 (31%), Gaps = 110/638 (17%) Query: 6 GSAASLANFIWKNAEDLWGDFKHT--DFG---KVILPFTLLRRLECALEPTRSAVRE--- 57 S SL+ F+ + + + + IL LR L+ + A Sbjct: 15 ASTQSLSAFVKSICDVMRRSNCASALQYVPELTWIL---FLRILDAQEARDQEAAEAVGA 71 Query: 58 ----------------------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 + G + + + L + + Sbjct: 72 SFAPALRSPYRWQDWAAPPPKNEADKPGHPKTPEGKLFGWKRQALFAAGDGKLFDFINKD 131 Query: 96 TRNNLESYIASFSDNA--------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-H 146 +L S N + I + R++ L I I + H Sbjct: 132 LLPHLHSLDLDPRTNLPRSGATPKQRIIGRIMTAVERVRVDSESNLRDILDKVDEISIDH 191 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 D +S +YE L+ + G + F TPR+V+ + P + Sbjct: 192 LDDQHFFTLSQVYEDLLLKMGE-KNSDGGQFFTPREVIRAMVHTV----------DPSLG 240 Query: 207 RTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 +T+YDP CGTGGFL A H+ + G+E E + +A ++ Sbjct: 241 QTVYDPCCGTGGFLAIAYEHIARKLGKRANSTDLDTLKHDTFFGREKENLVFPIALANLV 300 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLSNPPFGKKWEKDKDAVE 313 + ++ N+ G+ L+K ++F L+NPPFG K KD Sbjct: 301 LHGID-------RPNLWHGNALTKRATYAALFEQAPRQFDVILTNPPFGGKEGKDAQKNF 353 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 S +LFL + +L G A+VL LF S Sbjct: 354 AFE--------------TSATQVLFLQDILAELAP----NGTCAMVLDEGLLFRTN-ESA 394 Query: 374 ESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431 E +R L++ + AIV+LP +F + T L + K + ++ + + + Sbjct: 395 FVETKRKLVDECDLWAIVSLPGGVFSTAGAGVKTNLLFFTKGK---KTQRIWYYDLSSVK 451 Query: 432 TSIRN--------EGKKRRIINDDQR-RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 + +++D ++ + + E+ +R Y +R Sbjct: 452 VGKKTPLTLAHFGFAPNGTLLDDAALPASLVAEWRADESNSGTRFPSYARLLPQRGTPKG 511 Query: 483 PLRMSFILD-KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES-- 539 R S+ +D A+ ++ + LK ++++ + E + Sbjct: 512 ESRYSWTVDFAARRAKAREEMQPLMDGAAKIKAEVMDLKERLKRLRKHKAGEEALAALEV 571 Query: 540 -IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576 I+ + +++ + I A + +P A V D Sbjct: 572 QIREKDKAARDLESQAAAIDAAVFDLKAVNPNAVTVVD 609 >gi|325697669|gb|EGD39554.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK160] Length = 534 Score = 163 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 95/542 (17%), Positives = 208/542 (38%), Gaps = 73/542 (13%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAFGGSNIDL--ESFVKVAGYSFY 81 + ++ +L + L + L AV K Y ++D + + Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQ 85 Query: 82 NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123 E + TL +N E+ + + + IF E + Sbjct: 86 LKPEQFIETLHRKQNEDNFYEIFETTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDNI 145 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 ++ + I + I+ S ++E++I+ + + ++ TP Sbjct: 146 SDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + +L+ D +YDP+ G+G L + + + Sbjct: 206 SVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKTT 250 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 + Q++ ++ + L + + NI QG+T+ + ++ Y +SNPPF Sbjct: 251 VYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPPF 304 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGGG 354 + + +D VE + E RF G+PK S M LF+ H+ L+ G Sbjct: 305 KLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSD----G 358 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + F + IR+ L++N ++ +V++P+++F T + + + Sbjct: 359 QAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLGGVVSMPSNIFATTGTNVSILFIDKK- 415 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 +G V LI+A++L T ++ ++ +++ ++ ++I+D ++ +E + FS + Y Sbjct: 416 ---NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVDTFIKKEAVEDFSVTVSYEDI 472 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQQIYPY 529 + + +D + E + KLS L Q + + + + +Q+ Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQSHV-LEQEIEEQMKGL 531 Query: 530 GW 531 + Sbjct: 532 KY 533 >gi|205356615|ref|ZP_03223377.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421] gi|205345472|gb|EDZ32113.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421] Length = 473 Score = 163 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 93/512 (18%), Positives = 182/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 11 LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 68 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 69 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 127 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 128 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 176 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 177 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 236 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ ++ L+NPPFG K ++ Sbjct: 237 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 287 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 288 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 328 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 329 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 383 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 384 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 441 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 442 KILRTSEEILNSLEENLKTQQEYLNELKSILK 473 >gi|54024730|ref|YP_118972.1| putative restriction-modification system methyltransferase [Nocardia farcinica IFM 10152] gi|54016238|dbj|BAD57608.1| putative restriction-modification system methyltransferase [Nocardia farcinica IFM 10152] Length = 514 Score = 163 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 156/435 (35%), Gaps = 62/435 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGS 93 I +RRL+ E TR+ R LA G YN +S + Sbjct: 32 ITYLLFIRRLDD--EQTRALERANLLAQPLEGNPFPEGNDPDGRP-YNDLRWSVFRDRHA 88 Query: 94 TNTRNNLESYIASFSDNAKA---IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + + + + F + + F + G+L ++ + + Sbjct: 89 EEMFDIVANRVFPFIKEMRGEDSTYAHF-MKDARLTIPNPGMLQRVVDRLDKVPMEN--- 144 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +IYE+L+ + + F TPR ++ L ++ +P T+ Sbjct: 145 -RDTKGDIYEYLLAKIA--SAGQNGQFRTPRHIIELMVHMM----------APKPGDTIV 191 Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263 DP GT GFL A ++ + + HG + + + ML+ Sbjct: 192 DPASGTCGFLVAASEYMRAHHADAINSGAGRHHYHHKMFHGFDFDNTMLRIGSMNMLLHG 251 Query: 264 LESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 +E +I+ +L++ + + + L+NPPF + + A + + Sbjct: 252 IE-------QPDIRYRDSLAEANTGDAEAYSLVLANPPFAGSLDYENTAKDLQ------- 297 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 + K +LFL L+ GGRAA+++ LF + E+RR L+ Sbjct: 298 ----QIAKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRILV 347 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 E ++A+V LP+ +F ++T + + + V + + KR Sbjct: 348 EEQKLDAVVKLPSGVFKPYAGVSTAILFFTKTNSG-GTDNVWFYDVRAEGY---SLDDKR 403 Query: 442 R-IINDDQRRQILDI 455 ++++D+ + ++ Sbjct: 404 SALLSEDKIGALAEL 418 >gi|332662758|ref|YP_004445546.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] gi|332331572|gb|AEE48673.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] Length = 511 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 88/527 (16%), Positives = 175/527 (33%), Gaps = 90/527 (17%) Query: 39 TLLRRLECALEPTRSAVREK----YLAFGGSNIDLESFVKVA----------GYSFYNTS 84 L+ L+ LE ++ E Y ++ G S Sbjct: 33 LFLKYLDD-LEQDKATAAELTGKPYKNIISPEFQWATWAAPKKAKAGSASEVGRSVSEVE 91 Query: 85 EYSLSTLGSTNTRN----NLESYIASF-----SDNAKAIFEDFDFSSTIARLEKAGLLYK 135 L + + L Y+ F S + FS R++ L + Sbjct: 92 LDHQRALTGDDLADFVNIQLFPYLKKFKTEAESPDTIEYKIGEIFSELKNRIQSGYNLRE 151 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + MS++YE I+ G ++ TPR ++ ++ Sbjct: 152 VINRIDELRFRTHA-EKHEMSHLYEDKIKNMG-NAGRNGGEYYTPRPLIKTIVKVV---- 205 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---------PILVPHGQE 246 +P + +T+YD G+ GFL +A ++ + G+ + +G+E Sbjct: 206 ------APKIGQTIYDGAVGSAGFLVEAFEYLKNGGADGRPNLSTKDVETLQKRTFYGKE 259 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGK 303 + + + + M++ +E + NI +TL++ D+ R+ L+NPPFG Sbjct: 260 KKSLAYIIGIMNMILHGVE-------APNIVHTNTLAENLSDIQEKDRYDIILANPPFGG 312 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K + K + + LFL H L+ GG+A +V+ ++ Sbjct: 313 KERAEVQQNFPI--------------KTGETASLFLQHFIKILK----AGGKAGVVIKNT 354 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 L N S +R+ LLE + ++ LP F + T + ++ Q Sbjct: 355 FLSNTDNASI--SLRKLLLETCNLHTVLDLPGGTFTGAGVKTVVLFFEKGAPTQKVWFYQ 412 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------NGKFSRMLDYRTFGYRR 477 L RN G K +N+ + + + R + S L R Sbjct: 413 L-------NLERNLG-KTNALNEKDLAEFVALQKLRAGQVEGPETENSWNLSVRDALSGS 464 Query: 478 -IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + +++ L + E + + + L+ + ++ Sbjct: 465 PNTYDLSAKNPNKKEESALRQPEEILAEMRALDEESADILNAIMELI 511 >gi|262373387|ref|ZP_06066666.1| N-6 DNA methylase [Acinetobacter junii SH205] gi|262313412|gb|EEY94497.1| N-6 DNA methylase [Acinetobacter junii SH205] Length = 491 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 93/503 (18%), Positives = 173/503 (34%), Gaps = 67/503 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ ++ A + E F + N + L Sbjct: 33 MLFLKVVDDR--ENELATLALLEGITFKSPIPEKFRWRNWAA--NDEGMTGDELKDFIDN 88 Query: 98 NNLESYIASFSDN-------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + +N + + F+ ++ GL+ K+ + Sbjct: 89 ELFPALQNLAVENDDPRARVVQNV-----FADAYNYMKSGGLIRKVINQIQRGFDFNKSK 143 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +IYE L+R + ++ + +F TPR V ++ P + ++ Sbjct: 144 ERHAFGDIYEQLLRDL--QAAKNSGEFYTPRAVTTFMAQMI----------DPQLGESVL 191 Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP CGTGGFLT A+ H + + + +G E +P H +C M++ ++ Sbjct: 192 DPACGTGGFLTSAIEHKRENYVQTAEDEKILQNSIYGIEKKPLPHLLCTTNMILHGIDV- 250 Query: 268 PRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 I + +TLS KR L+NPPFG ++ +EK + R Sbjct: 251 -----PVKIIRDNTLSYSLNHWVKEKRVDVVLTNPPFGG---TEEQGIEKNFPSKFQTR- 301 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + + LF++ + L+ GRAA+VL +F ++ I+ L+E+ Sbjct: 302 --------ETADLFMVLIIQLLKAH----GRAAVVLPDGFMF---GEGIKTAIKEKLMED 346 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV--QLINATDLWTSIRNEGKKR 441 + IV LP +F T+I+T + + K E QL + + K Sbjct: 347 CNLHTIVRLPKSVFAPYTSISTNILFFTKGKKTEEVWFYEHQLPQGVKAYNKTKPLQLKE 406 Query: 442 RIINDDQRRQILDIYVSRENGKFSRML---DYRTFGYR-RIKVLRPLRMSFILDKTGLAR 497 + D + R + + + D GY IK + + LA+ Sbjct: 407 FDGLKAWWDKESDGFAGRVVNEQAWKVSLQDIIDRGYNLDIKNPHQVEEDVKDPEELLAK 466 Query: 498 LEA-DITWRKLSPLHQSFWLDIL 519 E + K+ ++ + L Sbjct: 467 YENLEAEVAKIRQQLKAILDEAL 489 >gi|293398988|ref|ZP_06643153.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62] gi|291610402|gb|EFF39512.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62] Length = 533 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 91/501 (18%), Positives = 192/501 (38%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ D S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335 K+F + +SNPPF + +D +E + RF G+PKI Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKDKDKM 338 Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSDIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + + +++ + FS ++ Y Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469 >gi|157415771|ref|YP_001483027.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81116] gi|19881217|gb|AAM00831.1|AF486546_5 HsdM [Campylobacter jejuni] gi|19881257|gb|AAM00864.1|AF486553_5 HsdM [Campylobacter jejuni] gi|157386735|gb|ABV53050.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 81116] gi|315931059|gb|EFV10034.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 494 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 93/512 (18%), Positives = 182/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ ++ L+NPPFG K ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILRTSEEILNSLEENLKTQQEYLNELKSILK 494 >gi|307708292|ref|ZP_07644759.1| type I restriction enzyme [Streptococcus mitis NCTC 12261] gi|307615738|gb|EFN94944.1| type I restriction enzyme [Streptococcus mitis NCTC 12261] Length = 534 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 81/422 (19%), Positives = 179/422 (42%), Gaps = 47/422 (11%) Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 + + +FY + E +L+ + NN + + D A +F++ + Sbjct: 86 LKPDQLIETLHRQQNEATFYESFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLIT 142 Query: 122 STIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFM 178 TI+ K + K I + ++ S ++E++I+ + + ++ Sbjct: 143 DTISDSSKRNEVAKAIINLLARVKFDESIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYY 202 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V + +L+ D +YDP+ G+G L + + + Sbjct: 203 TPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVD 247 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + Q++ ++ + L + + NI QG+T+ + ++ Y +SN Sbjct: 248 KTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSN 301 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPN 351 PPF + + +D VE + E RF G+PK S M LF+ H+ L+ Sbjct: 302 PPFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD-- 357 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+AA+VL + F + IR+ L+++ ++ +V++P+++F T + + Sbjct: 358 --GQAAVVLPTG--FITAQSGIDKAIRQHLVDHQMLAGVVSMPSNIFATTGTNVSILFID 413 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470 + +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ +E + FS Y Sbjct: 414 KK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTASY 469 Query: 471 RT 472 Sbjct: 470 EE 471 >gi|298369796|ref|ZP_06981112.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281256|gb|EFI22745.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014 str. F0314] Length = 432 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 163/422 (38%), Gaps = 53/422 (12%) Query: 136 ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 + +G + I+E+LI+ + S ++ TP V + +L+ Sbjct: 40 LISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGTYGEYYTPHAVARIMADILVPA 99 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 + S +YDP+ G+G L + + + + + + Q++ ++ + Sbjct: 100 EVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSSNL 147 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDK 309 L + N+ G+T+ K+F + +SNPPF + + Sbjct: 148 LR-----LNLILNNLVHSLNNVVHGNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSAYR 202 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGS---------------MLFLMHLANKLELPPNGGG 354 D +E E RF G+PK + +LF+ H+ L+ G Sbjct: 203 DQLEGEENRE---RFFAGIPKTPNHEDKIKEKESRKKMPIFLLFIQHILFSLKE----NG 255 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AAIVL + F + IR +L+EN ++ +V++P+++F T + + Sbjct: 256 KAAIVLPTG--FITAQSGIDKRIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK-- 311 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473 + +V LI+A+ L I++ ++ +++ + ++I + + ++ + FS ++ Y Sbjct: 312 --ANKDEVVLIDASGLGEKIKDGKNQKTVLSRAEEQKICNTFTHKQAVEDFSVVVGYDEI 369 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 + + +D ++ E + S + + + + ++I Sbjct: 370 KAKNYSLSAGQYFEVKIDYVDISADEFAQKMAEFSADLDKLFTESAE-LEKEIKEKLQTL 428 Query: 534 SF 535 F Sbjct: 429 KF 430 >gi|294675505|ref|YP_003576121.1| type I restriction-modification system subunit M [Prevotella ruminicola 23] gi|294472887|gb|ADE82276.1| type I restriction-modification system, M subunit [Prevotella ruminicola 23] Length = 509 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 76/506 (15%), Positives = 157/506 (31%), Gaps = 88/506 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK--------VAGYSFYNTSEYS-L 88 ++ L+ + E G ++ F K Y +S Sbjct: 45 LFFIKLLDD-----KQRREESNAIEFGYELEDPLFKKGQKWTNPETNQEVPYEELRWSVF 99 Query: 89 STLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 + + N RNN+ +I + + + + + + KA +L + + Sbjct: 100 KSFSAQNMLHHVRNNVFVFIKGIGKESGSAYSRY-MQDAVFSIPKADVLQSVVDDID--- 155 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 D M ++YE+++ R F TPR ++ + + D + Sbjct: 156 -LLDMEDADTMGDVYEYMLARMSE--KGQNGQFRTPRHIIRMIITMAEPKIDDVI----- 207 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELE-----PETHAVCV 256 DP G+ GF+ +A + D + + Sbjct: 208 -----CDPAMGSAGFIMEAAKQIYDQNRAVIQSNEDVRKRYYSTMFNGFDTDQTMLRIGA 262 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 ML+ + S NI+ +LS+D R+ C++NPPF K Sbjct: 263 MNMLLHGI-------PSPNIKYQDSLSEDNTDQSRYTLCVANPPFSGKV----------- 304 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G + + + + +LF+ L++ GGR V+ LF Sbjct: 305 LKGTISKSLLSIANTNATELLFVALFVRSLKV----GGRCFSVVPDGVLF--GNDKAHMA 358 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 IR+ L++ + A++++P +F + ++T + + + KV ++ Sbjct: 359 IRKELVDKQCLRAVISMPAGVFQPYSGVSTAILVFTKT-DAGGTDKVWFY---EMRGDGF 414 Query: 436 NEGKKRRIINDDQRRQILDIY------VSRENGKFSRMLDYRTFG----------YRRIK 479 KR +DD +L + R S ++ Y+ + Sbjct: 415 TLNAKRTPCSDDDIPDLLQRWQHLDAETDRTRKDQSFLVPVDEIRQNDYDLTFNKYKEVV 474 Query: 480 VLRPLRMSFILDKTGLARLEADITWR 505 + + + LE + Sbjct: 475 REKVVYDDPKDVFARIEALETQFAAK 500 >gi|20091245|ref|NP_617320.1| site-specific DNA-methyltransferase (adenine-specific), subunit M [Methanosarcina acetivorans C2A] gi|19916364|gb|AAM05800.1| site-specific DNA-methyltransferase (adenine-specific), subunit M [Methanosarcina acetivorans C2A] Length = 420 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 44/267 (16%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + F TPR V+ L L SP + DP CGT GFL A H+ Sbjct: 68 ATAGQNGQFRTPRHVIRLMVEL----------TSPQPTDIICDPACGTAGFLVCAGEHLR 117 Query: 229 DCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + + + HG + + + ML+ +E + +I+ + Sbjct: 118 EHHPNILHDEKLKQHFHRGMFHGFDFDNTMLRIGSMNMLLHGVE-------NPDIRYRDS 170 Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 L++D + + + L+NPPF D ++ KE + K +LF+ Sbjct: 171 LAQDYASDEEAYTLVLANPPFAGSL--DYESTSKELLK---------VVKTKKTELLFVA 219 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L+ GGRAA+++ LF + E+RR L+E ++AIV+LP +F Sbjct: 220 LFMRLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRMLVEEQKLDAIVSLPGGVFKP 273 Query: 401 -TNIATYLWILSNRKTEERRGKVQLIN 426 ++T + + + + V + Sbjct: 274 YAGVSTAILLFTKTNSG-GTDHVWFYD 299 >gi|121608004|ref|YP_995811.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] gi|121552644|gb|ABM56793.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2] Length = 485 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 84/477 (17%), Positives = 157/477 (32%), Gaps = 67/477 (14%) Query: 8 AASLANFIWKNAEDLW--GDFKH-----TDFGKVILP-FTLLRRLECALEPTRSAVREKY 59 ++L + I + + + L L+ + E E Sbjct: 1 MSNLTSVIKSIQDIMRQDSGVDGDAQRISQ-----LTWLLFLKVFDALEEE-----LELT 50 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 S I + + +L L++ A N + Sbjct: 51 RGAYHSPIPEPMRWRHWAADVEGMTGDALLDFVDNQLFVVLKNLSADPLRNPRGYVVRSV 110 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F ++ LL ++ +GI+ +++YE +++ S + A +F T Sbjct: 111 FEDAYNCMKSGHLLRQVVNKINGIDF-NRQSERHQFNDLYEKILKDLQSAGN--AGEFYT 167 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIP 237 PR V + +P + + DP GTGGFL A+ H+ + ++ Sbjct: 168 PRAVTQFMVDIC----------NPRLGEVVLDPATGTGGFLVCAIEHLRKQVRNIADEVM 217 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHY 294 G E + H +CV +L+ +E I + L +D T R Sbjct: 218 LQSSIRGVEKKHLPHILCVTNLLLHGIEV------PSQIVHDNALMRPLRDYTTADRVDL 271 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +NPPFG E D + + + + LFL+ + + L+ GG Sbjct: 272 VFTNPPFGGMEECDGYPADL---------------RTKETADLFLVLIKHILKP----GG 312 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 RAA+VL LF A I+ LL + IV LP +F T I T L + Sbjct: 313 RAALVLPDGVLFGEGAK---VRIKEQLLAECNLHTIVRLPHGVFSPYTGIKTNLLFFTKG 369 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR--RQILDIYVSRENGKFSRML 468 + + + + + + + + ++ D + +R + + + Sbjct: 370 TPTTHVWYYEHLYPPGVKNYSKTQPIRIQEFDHEKAWWGNEADGFAARVENEHAWKV 426 >gi|182414826|ref|YP_001819892.1| N-6 DNA methylase [Opitutus terrae PB90-1] gi|177842040|gb|ACB76292.1| N-6 DNA methylase [Opitutus terrae PB90-1] Length = 563 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 74/431 (17%), Positives = 147/431 (34%), Gaps = 72/431 (16%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGS 93 I L+RL+ + L + K A Y +S L + Sbjct: 32 ITYLLFLKRLDDL--QKNEENKAARLKLKKLERRIFPAAKDAKGRPYEDCRWSRFQHLEA 89 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-------LLYKICKNFSGIELH 146 + ++ F D S+ ++ A LL K+ I + Sbjct: 90 KEMFTVVSEHVFPFLRTLGG-----DDSTYAHHMKDARFTIPTPALLAKVVDLIDQIPME 144 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++YE+++ + + F TPR ++ L L +P Sbjct: 145 ----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIQLMVEL----------TAPTAK 188 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGM 259 + DP CGT GFL A ++ + + HG + + + M Sbjct: 189 DVICDPACGTAGFLVAAGEYLRTRHPEILRDTKLRQHFHHHLFHGFDFDNTMLRIGSMNM 248 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPF--GKKWEKDKDAVEKEH 316 L+ +E + +I+ +L++D ++F L+NPPF +E +++ Sbjct: 249 LLHGVE-------NPDIRYRDSLAQDHAGEEEKFTLLLANPPFAGSLDYENCAKDLQQ-- 299 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + K +LFL L+ GGRAA+++ LF + + Sbjct: 300 -----------IVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSNAHRT 342 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ L+E+ ++A+++LP +F ++T + + + + V Sbjct: 343 LRKLLVEDQKLDAVISLPGGVFKPYAGVSTAILLFTKTNSG-GTDHVWFYKVEADGM--- 398 Query: 436 NEGKKRRIIND 446 + KR + Sbjct: 399 SLDDKRTELLP 409 >gi|240080598|ref|ZP_04725141.1| hypothetical protein NgonF_04687 [Neisseria gonorrhoeae FA19] gi|240118085|ref|ZP_04732147.1| hypothetical protein NgonPID_06446 [Neisseria gonorrhoeae PID1] gi|240123639|ref|ZP_04736595.1| hypothetical protein NgonP_06824 [Neisseria gonorrhoeae PID332] gi|268596723|ref|ZP_06130890.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19] gi|268603800|ref|ZP_06137967.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1] gi|268682268|ref|ZP_06149130.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332] gi|268550511|gb|EEZ45530.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19] gi|268587931|gb|EEZ52607.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1] gi|268622552|gb|EEZ54952.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332] Length = 533 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 91/501 (18%), Positives = 192/501 (38%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + I+++ + +K Y + + L + FS Sbjct: 59 ENPDEAIEFINMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ + S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335 K+F + +SNPPF + +D +E + RF G+PKI Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKDKDKM 338 Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSDIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + + +++ + FS ++ Y Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469 >gi|19881281|gb|AAM00884.1|AF486557_5 HsdM [Campylobacter jejuni] Length = 494 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 92/512 (17%), Positives = 181/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ ++ L+NPPFG ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGXEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILRTSEEILNSLEENLKTQQEYLNELKSILK 494 >gi|86152925|ref|ZP_01071130.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|19881263|gb|AAM00869.1|AF486554_5 HsdM [Campylobacter jejuni] gi|85843810|gb|EAQ61020.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 494 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 93/512 (18%), Positives = 182/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ ++ L+NPPFG K ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILRTSEEILNSLEENLKTQQKYLNELKSILK 494 >gi|327472745|gb|EGF18172.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK408] Length = 534 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 83/435 (19%), Positives = 179/435 (41%), Gaps = 55/435 (12%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASF 107 + K +FY E +L+ + N + ++ I F Sbjct: 77 EDIGTATAQLKPEQFIETLHRKQNEDNFYEVFETTLNQIAIDNNDIFSVHTDGDTAIRLF 136 Query: 108 SDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 + + I ++ SS ++ +A LL ++ F S ++E++I+ Sbjct: 137 DE--RLITDNISDSSKRNQVARAIINLLARV--KFDETIFS---QGFDFFSTLFEYMIKD 189 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + + ++ TP V + +L+ D +YDP+ G+G L + + Sbjct: 190 YNKDGGGKYAEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLAS 242 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + Q++ ++ + L + + NI QG+T+ + Sbjct: 243 RI--------GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIAN 289 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LF 338 ++ Y +SNPPF + + +D VE + E RF G+PK S M LF Sbjct: 290 RHP-EKMDYIVSNPPFKLDFSEWRDRVETLPEASE--RFFAGVPKVPAKSKDKMAIYELF 346 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H+ L+ G+AA+VL + F + IR+ L++N ++ +V++P+++F Sbjct: 347 VQHIIYSLKSD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIF 400 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T + + + +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ Sbjct: 401 ATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIK 456 Query: 459 RE-NGKFSRMLDYRT 472 +E FS + Y Sbjct: 457 KEVVDDFSVTVSYED 471 >gi|332524592|ref|ZP_08400795.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2] gi|332107904|gb|EGJ09128.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2] Length = 613 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 98/467 (20%), Positives = 167/467 (35%), Gaps = 74/467 (15%) Query: 36 LPFT----LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST- 90 LP L+ L+ LE E I+ + S L Sbjct: 55 LPLLTWVMFLKFLDD-LEIVHEEEAELDGKRYEPIIEAPYRWRDWAAREDGISGDELLAF 113 Query: 91 LGSTNTRNN-------LESYIA-----SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 +G TR L +Y+ + + + + F R+ LL I Sbjct: 114 IGQEQTRRADGSAGPGLFAYLRSLGSRGAKGSQREVIANV-FKGVQNRMVSGYLLRDILN 172 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 +GI +S++YE ++R + +F TPR VV Sbjct: 173 KINGIHFSASE-EIHTLSHLYESMLREMRDAAG-DSGEFYTPRPVVRFMVQ--------- 221 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVC 255 P + T+ DP CGTGGFL +A +H+A + + GQE +P + + Sbjct: 222 -AMDPQLGETVLDPACGTGGFLVEAFHHMAGQVKNPDQRRTLQRSSLFGQEAKPLPYMLA 280 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 +L+ LE + I G+TL ++ +R L+NPPFG Sbjct: 281 QMNLLLHGLE-------APQIAYGNTLERRINEIGHSERVDVILTNPPFG---------- 323 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP---------NGGGRAAIVLSSS 363 E + G F P + + ++ ++LFL ++ KL + GGRAA+V+ + Sbjct: 324 -GEEEAGIKNNFPPNM-QTAETALLFLQYIMRKLRVAGAPVAGGKAAARGGRAAVVVPNG 381 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 LF + I++ +L+ + IV LP +F T+I L + Sbjct: 382 TLFGDGIC---AVIKQEMLKEFRLHTIVKLPQGVFAPYTDIPANLLFFERGGPTDTIWYY 438 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 +L R + K + ++ + +RE G + +D Sbjct: 439 ELPLPEG-----RKKYSKTAPLQFEEFTAAQAWWTAREEGPQAWKVD 480 >gi|307268426|ref|ZP_07549804.1| N-6 DNA Methylase [Enterococcus faecalis TX4248] gi|306515233|gb|EFM83770.1| N-6 DNA Methylase [Enterococcus faecalis TX4248] Length = 284 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 112/300 (37%), Gaps = 47/300 (15%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107 + +K S+ +Y S+L + ++L+ Sbjct: 63 QTELYKELLKDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122 Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S N K +F+D D S ++ + ++ K + I++ V+ + YE Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI +F SE + A +F TP V + ++ + + +++DPT G+G + Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + N++ P + HGQEL T + +++ +E++ N++ G T Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282 >gi|302520832|ref|ZP_07273174.1| type I restriction enzyme [Streptomyces sp. SPB78] gi|302429727|gb|EFL01543.1| type I restriction enzyme [Streptomyces sp. SPB78] Length = 506 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 73/424 (17%), Positives = 142/424 (33%), Gaps = 60/424 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 I ++RL+ + + S + + +F + + + Sbjct: 32 ITYLLFVKRLDEI-QTRKDRKARATGKPDPSPFFTDEQQDLRWQNFKVKDPEIMYGIVAD 90 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 L S A + LL K+ GI + Sbjct: 91 GLFPYLRGMGGDDSTYAH------HMKDARFTIPNPNLLAKVVDLLDGISMDAS----DT 140 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +IYE+++ + + F TPR ++ L + PG + DP C Sbjct: 141 KGDIYEYMLAKIATSG--QNGQFRTPRHIIDLMVEM----------TRPGPRDVICDPAC 188 Query: 215 GTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 GT GFL A +++ H + HG + + + ML+ +E Sbjct: 189 GTAGFLVQAASYMRRVHREELLEAEHRGHFNDKMFHGFDFDTTMLRIGSMNMLLHGVE-- 246 Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + +I+ +L + +++ L+NPPF + + AV+ + Sbjct: 247 -----NPDIRYRDSLGESAAGEAEQYSLILANPPFAGSLDYESTAVDLQL---------- 291 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + K +LFL + GGRAA+++ LF + E+RR L+E+ Sbjct: 292 -IAKTKKTELLFLALFLRLM----QTGGRAAVIVPDGVLF--GSTKAHKELRRMLVEDQQ 344 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++A+V LP+ +F ++T + + V + + KR + Sbjct: 345 LQAVVKLPSGVFKPYAGVSTAILFFQKTDSG-GTDHVWFYDVQADGL---SLDDKRNDLL 400 Query: 446 DDQR 449 + R Sbjct: 401 PEDR 404 >gi|226951290|ref|ZP_03821754.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244] gi|226837963|gb|EEH70346.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244] Length = 493 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 73/521 (14%), Positives = 163/521 (31%), Gaps = 96/521 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +RRL+ + + + L Sbjct: 35 LLFIRRLD--------------EIQITKEKKANRLKTAVEHPIFTPEQDHLRWSK----F 76 Query: 98 NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144 L ++ A +F D ++ ++ A LL K+ + + Sbjct: 77 ITLGDAATLYNTVANEVFPFIKNLGAEDETTYSHHMKDARFTIPTPALLTKVVDLVADVP 136 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + +IYE+++ + + F TPR ++ + L+ P Sbjct: 137 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------KPR 180 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCV 256 T+ DP CGT GFL A ++ D S K G + + + Sbjct: 181 PTDTICDPACGTAGFLVAASEYLNDHYSTEIFANPAAAKRFSEETFFGYDFDSTMLRIGS 240 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ +E + I+ +LS+ +++ L+NPPF + + A + Sbjct: 241 MNMMLHGVE-------NPRIENRDSLSETHSHIAEKYSLILANPPFAGSLDNESCAKNIQ 293 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + K + GGRAA+++ LF + + Sbjct: 294 A-----------VVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHK 336 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +R+ ++E +EAI+++P+ +F ++T + I + + KV + Sbjct: 337 ALRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY-- 393 Query: 435 RNEGKKRRIIND-----DQRRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRP 483 + KR ++ + ++ + R+ + S M+D + Sbjct: 394 -SLDDKRNELDASKHENNNIPDLIARFKNLEGEKDRKATEQSFMVDKADIAANGYDLSIN 452 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + ++ + ++ + LK +++ Sbjct: 453 RYKEVVYEQVEYETPSKILADLEVLEQDILKGMATLKELLK 493 >gi|159897811|ref|YP_001544058.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779] gi|159890850|gb|ABX03930.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779] Length = 481 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 163/450 (36%), Gaps = 75/450 (16%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ + ++P + + LA+ I+ E +F N + L Sbjct: 33 LLFLKIFDDREQELALIDPHYRSPMPEGLAWHQWAINREGITGEELLNFVNNQLFPQLKN 92 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L +TN + + F ++ LL ++ + I+ + Sbjct: 93 LAATNQAKAMIQSV---------------FEDAYNYMKNGTLLRQVINKINEIDFNRSA- 136 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +++YE L+ + + A ++ TPR V +L P + +L Sbjct: 137 DRHLFNDVYEKLLSDLQAAGN--AGEYYTPRTVTQFMIEML----------KPRLGESLL 184 Query: 211 DPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP GTGGFL A+ ++ G E +P H + + +++ + Sbjct: 185 DPAAGTGGFLVSAVEYIRRNDVHTPSDLETLQANIRGIEKKPLPHLLGITNLILHGINL- 243 Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 N+Q +TL++ + + +NPPFG +++D +E R Sbjct: 244 ------PNLQHANTLARSYSSYGVDDQVDIIATNPPFGG---QEEDGIENNFPELFRTR- 293 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + +D LFL+ + L+ GRAA++L LF ++ I+ LL+N Sbjct: 294 -----ETAD---LFLVLIMRLLKP----NGRAALILPDGTLF---GEGIKTRIKEELLKN 338 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + IV LP +F + T I T L + + + + K + Sbjct: 339 CNLHTIVRLPNGVFNPY-TGIKTNLLFFEKGQPTQEIWYY-----EHPYPAGYKSYSKTK 392 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRT 472 I ++ +++R+ +F+ +D Sbjct: 393 PIRLEEFEPERAWWINRQTNQFAWKVDIAD 422 >gi|17230967|ref|NP_487515.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC 7120] gi|17132608|dbj|BAB75174.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC 7120] Length = 480 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 82/496 (16%), Positives = 176/496 (35%), Gaps = 58/496 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E + + Y + + ++ + + L Sbjct: 33 MIFLKVFDAR-EEEYELLEDNYKSPIPEGLRWRNWAADSEG----ITGDGLLDFVDNALF 87 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + +D + F ++ L+ ++ + ++ + S Sbjct: 88 KTLKELRTTATDARGQMIGKV-FEDAYNYMKNGTLIRQVINKLNEVDFNKKDQKK-QFSE 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A ++ TPR V + P + ++DP CGTG Sbjct: 146 IYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPACGTG 193 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A++++ +P G E +P +CV +++ ++ + Sbjct: 194 GFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILNGIDV-------PS 246 Query: 276 IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + +TL +D +R ++NPPFG ++D +E P + Sbjct: 247 AEHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LFL+ +A+ L+ GGR AIVL LF + I+ LL++ + IV Sbjct: 295 ETADLFLVLIAHLLKE----GGRGAIVLPDGTLFGEGVK---TRIKEKLLQDCNLHTIVR 347 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T L + + E + + K + I ++ Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTETIWYY-----EHPYPAGYKSYSKTKPIRFEEFAP 402 Query: 452 ILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 + + +RE +F+ + + + P ++ + +L Sbjct: 403 EQEWWDNREENEFAWKVSIADLKANNYNLDIKNPHKVDVEHADLDEMLADHQKLMAELGE 462 Query: 510 LHQSFWLDILKPMMQQ 525 + ++++ + + Sbjct: 463 VRSKLKFELMEALERD 478 >gi|240016476|ref|ZP_04723016.1| hypothetical protein NgonFA_04779 [Neisseria gonorrhoeae FA6140] Length = 533 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ D S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336 K+F + +SNPPF + +D +E + + RF G+P M Sbjct: 282 PAHKDASGCLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338 Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + + +++ + FS ++ Y Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469 >gi|59801126|ref|YP_207838.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090] gi|254493837|ref|ZP_05107008.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291] gi|59718021|gb|AAW89426.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090] gi|226512877|gb|EEH62222.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291] Length = 533 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ D S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336 K+F + +SNPPF + +D +E + + RF G+P M Sbjct: 282 PAHKDASGCLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338 Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + + +++ + FS ++ Y Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469 >gi|257092509|ref|YP_003166150.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045033|gb|ACV34221.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 516 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 125/332 (37%), Gaps = 53/332 (15%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + A LL K+ + + ++YE+++ + + F TPR ++ Sbjct: 127 TIPSAALLAKVVDLLDAVPME----DRDTKGDVYEYMLGKIA--SAGQNGQFRTPRHIIR 180 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPP 238 L L +P + DP CGT GFL A + + + Sbjct: 181 LMVEL----------TAPQPSDVICDPACGTAGFLVTAGEVLRQRHPNLLHDAGRREHFH 230 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLS 297 + HG + + + ML+ +E + +I+ +L++D +++ L+ Sbjct: 231 HRMFHGFDFDNTMLRIGSMNMLLHGVE-------NPDIRYRDSLAQDHAGEEEKYTLLLA 283 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF + + A R + K +LFL L+ GGRAA Sbjct: 284 NPPFAGSLDYENTA-----------RDLLQIVKTKKTELLFLALFLRLLKP----GGRAA 328 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 +++ LF + + ++RR L+E+ ++A+V LP +F ++T + + + + Sbjct: 329 VIVPDGVLF--GSSTAHKQLRRMLVEDQKLDAVVKLPGGVFKPYAGVSTAILLFTKTNSG 386 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 +V + + KR + + Sbjct: 387 -GTDQVWFYDVQADGW---SLDDKRTPLLPED 414 Score = 38.0 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 7/47 (14%) Query: 632 GYEINFNRFFYQ-----YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 GY+++ NR Y+ R ++I A+L +E +I ++++ Sbjct: 469 GYDLSLNR--YKEVVHDAVEHRAPKEILADLAKLEEEIQRGMKDLEG 513 >gi|148925705|ref|ZP_01809393.1| putative type I restriction enzyme M protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845715|gb|EDK22806.1| putative type I restriction enzyme M protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 494 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 92/512 (17%), Positives = 183/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ + +I E F + + + S Sbjct: 32 LFLKFLDDYEINLKD--LAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ +++ L+NPPFG K ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILKTSEEILNSLEENLKIQQEYLNELKSILK 494 >gi|329729351|gb|EGG65758.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189] Length = 277 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 99/288 (34%), Gaps = 43/288 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G L Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 K + GQE T+ + ML+ + + Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENF 277 >gi|19881269|gb|AAM00874.1|AF486555_5 HsdM [Campylobacter jejuni] Length = 494 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 90/510 (17%), Positives = 182/510 (35%), Gaps = 71/510 (13%) Query: 39 TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ L+ + + Y + + + S + Sbjct: 32 LFLKFLDDYETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNASSGSDLLEF 91 Query: 96 TRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 92 VNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKEDE 150 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + +YE L++ GS+ + +F TPR ++ ++ P +YD Sbjct: 151 VFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERIYD 199 Query: 212 PTCGTGGFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAGML 260 P+CG+ GFL ++ H+ + G+E P ++A+ V M+ Sbjct: 200 PSCGSCGFLVESFLHILYKDRTKSKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMI 259 Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + + S NI + +TLSK D+ ++ L+NPPFG K ++ Sbjct: 260 LHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF---- 308 Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -----------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAFVS 351 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +++ LL++ +E +++LP+ +F + + T + S K G + + I Sbjct: 352 VKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYELIP 406 Query: 436 NEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494 K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 407 PYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEEKI 464 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 465 LRTSEEILNSLEENLKTQQKYLNELKSILK 494 >gi|148262629|ref|YP_001229335.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] gi|146396129|gb|ABQ24762.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] Length = 541 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 87/481 (18%), Positives = 173/481 (35%), Gaps = 85/481 (17%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 +F +I L + + V+E + I + K + + E Sbjct: 29 DGNEFK-IITQVFLYKFMNDKF---GYEVKEMEPKLKKAAIWEQEIAKYSDKDY----EM 80 Query: 87 SLSTLGST-------------NTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAG 131 L + + R N + F D + I F + FS K Sbjct: 81 LLLKMSPDSARLKREHFLPRLHNRQNEGEFAKLFDDTLRDIAIFNNDIFSVKTGTGAKVT 140 Query: 132 LLYKICKNFSGIELHPD------------------TVPDRVMSNIYEHLIRRFGSEVSEG 173 L ++ + D S I+E+LI+ + + Sbjct: 141 LFDELSNFITDSSRRDDFCRAIITQLIPFSFEKIFHQKLDFFSTIFEYLIKDYNKDGGGK 200 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP V + A+L+D P T YDP+ G+G L + + + + Sbjct: 201 YAEYYTPHAVSKIMAAILVD--------KPVKNVTCYDPSAGSGTLLMNLAHAIGE---- 248 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289 + Q++ ++ ML L + +NI QG+T+ Sbjct: 249 ----DRCTIYSQDISQKS-----TSMLRLNLILNNLVHSIQNIIQGNTMLTPYHKSGDKL 299 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHL 342 F Y +SNPPF + ++ +E + RF G+PKI + +LF+ H+ Sbjct: 300 MTFDYVVSNPPFKLDFSDFRNDLETKQNRD---RFFAGIPKIPNKDKDKMAIYLLFIQHI 356 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L + G+AAIV+ + F E +IR L+ ++ +V++P+++F T Sbjct: 357 MFSL----SAKGKAAIVVPTG--FITAQSGIEKKIREKLVVAKMLRGVVSMPSNIFATTG 410 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + L +G + L++A+ L T+++ ++ +++ + I+ + + Sbjct: 411 TNVSVLFLDK---TNTKGDIVLMDASKLGTTVKEGKNQKTVLSVAEEELIIKTFNDHKAV 467 Query: 463 K 463 + Sbjct: 468 E 468 >gi|240014036|ref|ZP_04720949.1| hypothetical protein NgonD_05208 [Neisseria gonorrhoeae DGI18] gi|240121602|ref|ZP_04734564.1| hypothetical protein NgonPI_07528 [Neisseria gonorrhoeae PID24-1] Length = 533 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ D S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336 K+F + +SNPPF + +D +E + + RF G+P M Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338 Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + + +++ + FS ++ Y Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469 >gi|114798203|ref|YP_761235.1| type I restriction-modification system, M subunit [Hyphomonas neptunium ATCC 15444] gi|114738377|gb|ABI76502.1| type I restriction-modification system, M subunit [Hyphomonas neptunium ATCC 15444] Length = 513 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 143/428 (33%), Gaps = 71/428 (16%) Query: 35 ILPFTLLRRLECA--LEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 I ++RL+ LE ++A E+ + G + + + F N ++ Sbjct: 32 ITYLLFIKRLDDLHTLEENKAANLGIKMERRIFPDGKDDQGRDWSDLRWSRFKNFEARAM 91 Query: 89 STLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 + + L S+ ++ + FS+ A LL K I + Sbjct: 92 MDVVAERVFPFLRQMGEEGSSYGEHMRD--ARLGFSN-------AALLAKAVDLLDKIPM 142 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++YE+++ + + F TPR ++ L + P Sbjct: 143 D----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIQLMVEM----------TQPTP 186 Query: 206 IRTLYDPTCGTGGFLTDAMNHVAD-------CGSHHKIPPILVPHGQELEPETHAVCVAG 258 + DP GT GFL A ++ + + HG + +P + Sbjct: 187 QDVICDPAAGTCGFLVAAGEYLREKHASLFRHEKQRTHFHNGMFHGFDFDPTMLRIGSMN 246 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M++ +E + ++ +L+++ R+ L+NPPF + D A + + Sbjct: 247 MVLHGVE-------NPDVSYRDSLAQEHDADAGRYSLILANPPFAGSLDYDTTAKDLQ-- 297 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + K + GGRAA+++ LF + + + Sbjct: 298 ---------QIVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHKTL 342 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 R L+E +EA++ LP+ +F ++T + + V + + Sbjct: 343 REMLVEKHKLEAVLKLPSGVFRPYAGVSTAILFFTKT-GVGGTDHVWFYDLQADGQ---S 398 Query: 437 EGKKRRII 444 KR + Sbjct: 399 LDDKRTEL 406 >gi|331006857|ref|ZP_08330112.1| Type I restriction-modification system, DNA-methyltransferase subunit M [gamma proteobacterium IMCC1989] gi|330419332|gb|EGG93743.1| Type I restriction-modification system, DNA-methyltransferase subunit M [gamma proteobacterium IMCC1989] Length = 493 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 90/458 (19%), Positives = 167/458 (36%), Gaps = 58/458 (12%) Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + N +L++ A N + FS ++ LL ++ + I+ + Sbjct: 82 INNNLIPDLKTLTAPIDSNPRGYVVKEAFSDAFNYMKNGTLLRQVVNKLNEIDFT-SSEE 140 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + ++YE +++ S + A +F TPR V ++ +P + ++ D Sbjct: 141 RHLFGDLYEQILKDLQSAGN--AGEFYTPRAVTRFIVQMI----------NPQLGESVLD 188 Query: 212 PTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 P CGTGGFL + + ++D + G E + H +C M++ +E Sbjct: 189 PACGTGGFLACSADLLSDQVGGDTDKYNLFQESLRGVEKKQLPHLLCTTNMMLHGIEV-- 246 Query: 269 RRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 KNI+ G+TLSK L + +SNPPFG ++D +EK R Sbjct: 247 ----PKNIRHGNTLSKQLSSIDEDDQVDVVVSNPPFGG---MEEDGIEKFFPAEMQTR-- 297 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + +D LFL ++ L GRAA+VL LF ++I++ LLE Sbjct: 298 ----ETAD---LFLQYIVEILNEK----GRAAVVLPDGTLFGEGVK---TKIKKMLLEEC 343 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG--KVQLINATDLWTSIRNEGKKRR 442 + +V LP +F T+I T + K + +V L + K + Sbjct: 344 NLHTLVRLPNSVFAPYTSIKTNILFFEKGKPTKEIWYYEVPLPEGVKAF-------NKTK 396 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDY---RTFGYRRIKVLRPLRMSFILDKTGLARLE 499 + + + + +N K F ++ + + ++ LD E Sbjct: 397 PMKLEDFAACTEWWGEGKNIKAKTKRKNRVENEFA-WKVDIQTIIDRNYNLDIKNPHVGE 455 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 + ++ + Q+ K Sbjct: 456 QINHDPEELLADYDKQQQDIQRLRNQLKGILSEALTQK 493 >gi|315637034|ref|ZP_07892257.1| type I restriction-modification system DNA-methyltransferase [Arcobacter butzleri JV22] gi|315478570|gb|EFU69280.1| type I restriction-modification system DNA-methyltransferase [Arcobacter butzleri JV22] Length = 494 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 109/512 (21%), Positives = 197/512 (38%), Gaps = 82/512 (16%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLG 92 L+ L LE ++S E ID + + +KV G S+ L Sbjct: 32 LFLKFLAD-LEESKSEDAELDGEIYTYIIDEKYRWQNWAVLKVDGKKDIINSKSGDDLL- 89 Query: 93 STNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147 L Y+ F ++N K+I F R+ L +I ++ H Sbjct: 90 -DFVNKELFPYLKGFKSITENPKSIKYKIGAIFEFLDNRIANGHTLREILDIIDEMDFH- 147 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + +S IYE L++ GS+ + +F TPR ++ + T ++ +P + + Sbjct: 148 NQSDLFQLSLIYEKLLKDMGSDGG-NSGEFYTPRPLIKVITDVV----------NPTIGQ 196 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCV 256 T+YDP G+ GFL +A NH+ + G E P ++ + V Sbjct: 197 TIYDPAVGSCGFLIEAYNHIRYADVQNNKQRDLSTDQLKFLNEDTFFGNEKTPLSYVMGV 256 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 M++ +E S NI + +TL+KD L RF L+NPPFG K ++ Sbjct: 257 MNMILHGIE-------SPNIAKSNTLTKDIRGLEEKDRFDCILANPPFGGKEKEQIQQNF 309 Query: 314 KEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 P S+ +LFL H+ N L+ GG+ +V+ LF + + Sbjct: 310 ---------------PIKSNATELLFLQHMMNHLK----LGGKCGVVIPEGVLF--QTNN 348 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431 +++ LLE + I++LP+ +F + + T + + + Sbjct: 349 AFQSVKKDLLERFNVHTILSLPSGVFLPYSAVKTNVVFFDR---VGSTNDIYYYEVNPPY 405 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 K + IN D + LD + SR+ + S +++ I P + I Sbjct: 406 KLT-----KNKPINIDHFAEFLDSWESRKISENSWIVNVNDIKDFDISAKNPNKNETIEH 460 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 K+ + +E KL+ + +D ++ ++ Sbjct: 461 KSPIELVENI----KLNNAEINDLMDEIETIL 488 >gi|240115789|ref|ZP_04729851.1| hypothetical protein NgonPID1_06019 [Neisseria gonorrhoeae PID18] gi|260440393|ref|ZP_05794209.1| hypothetical protein NgonDG_04771 [Neisseria gonorrhoeae DGI2] gi|268601467|ref|ZP_06135634.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18] gi|291043690|ref|ZP_06569406.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268585598|gb|EEZ50274.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18] gi|291012153|gb|EFE04142.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 533 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ + S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HVIGE--------DKCMIYTQDISQKSSNLLR-----LNLSLNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335 K+F + +SNPPF + +D +E + RF G+PKI Sbjct: 282 PYHKDASDRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKDKDKM 338 Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + + +++ + FS ++ Y Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469 >gi|189467553|ref|ZP_03016338.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM 17393] gi|189435817|gb|EDV04802.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM 17393] Length = 498 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 77/525 (14%), Positives = 178/525 (33%), Gaps = 77/525 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLST 90 I ++ L+ + + A+ + E + ++ + Sbjct: 32 ITYLLFMKMLDDK-QREKEAIANLTGDVLLNPTFPEGVWRNPSTDKDVPYHEMRWHVFKE 90 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPD 148 + T + + + + F + + T+ ++ A LL ++ ++ I Sbjct: 91 MEPTKMLDRVRNDVFIFLRHVGKEGSAYRKAMEDTVFQITNARLLSRVIESIENIT---- 146 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + +M ++YE+++ + F TPR ++ + L+ P + T Sbjct: 147 SDGADMMGDVYEYMLGIMAASG--TNGQFRTPRHIIRMMVELM----------RPTLNDT 194 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261 + DP G+ GF+ +A + + S + HG + + + M++ Sbjct: 195 ICDPAMGSAGFIMEAAKFITEHQSDDLLNIGEGDRFRKEIFHGSDSDASMLRIGCMNMML 254 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 ++ N+ ++LS + R+ CL+NPPF + D A + Sbjct: 255 HDVD-------EPNLYYRNSLSDENNDTNRYTLCLANPPFAGSLDTDDIAHTLKAAV--- 304 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 K +LFL + L GGR A ++ + L G A IR L Sbjct: 305 --------KTKKTELLFLALMMRML----QSGGRCASIVPDTVL-TGDAQ-AYKTIRSAL 350 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 ++ ++A++ +P+ +F + ++T + I + KV + S+ + Sbjct: 351 VDKHCMQAVITMPSGVFQPYSGVSTAIIIFTKT-GTGGTDKVWFYDMRADGFSLTTQRTP 409 Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 + ND I+ + + E SR SF + + Sbjct: 410 QPEQND--IPDIISRFHNLEAETDRSRK-----------------EQSFFVTADEIRANG 450 Query: 500 ADITWRKLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSN 543 D+++++ + + + + ++ ++ A K Sbjct: 451 YDLSYKRYHEVEREVIEYEAPETIIARMEERQKAIDAAFAEFKKL 495 >gi|57238568|ref|YP_179699.1| type I restriction-modification system, M subunit [Campylobacter jejuni RM1221] gi|19881230|gb|AAM00841.1|AF486549_3 HsdM [Campylobacter jejuni] gi|57167372|gb|AAW36151.1| type I restriction-modification system, M subunit [Campylobacter jejuni RM1221] gi|315059002|gb|ADT73331.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Campylobacter jejuni subsp. jejuni S3] Length = 494 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 92/512 (17%), Positives = 182/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ S NI + +TL+K D+ +++ L+NPPFG K ++ Sbjct: 258 MILH-------EVKSPNIIKTNTLNKKITDITQSEKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILKTSEEILNSLEENLKIQQEYLNELKSILK 494 >gi|187939950|gb|ACD39086.1| type I restriction-modification system methyltransferase subunit [Pseudomonas aeruginosa] Length = 527 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 77/423 (18%), Positives = 137/423 (32%), Gaps = 89/423 (21%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V +IYE+L+ + + F TPR ++ L+ +P + Sbjct: 147 QSDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMIELI----------APQPTEVIC 194 Query: 211 DPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILVPHGQELE 248 DP CGT GFL M ++ + + + G + + Sbjct: 195 DPACGTAGFLARTMEYLNRVHSSPEGTFSDEDGNRHYSGDLLEPYRQHINSQMFWGFDFD 254 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFG 302 V M++ + NI+ +LSK F L+NPPF Sbjct: 255 TTMLRVSSMNMMLHGVNG-------ANIRYQDSLSKSIKEHYPRQEQNFFDVVLANPPF- 306 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 E GL K +LF+ H+ L+ GGR+A+++ Sbjct: 307 -------KGSLDETNTNPD---VLGLVKTKKTELLFVAHILRSLK----LGGRSAVIVPD 352 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421 +F + ++R+ LL+N+ +E IV+LP+ +F ++T + I + T E + Sbjct: 353 GVVF--GSSKAHQQLRQELLDNNQLEGIVSLPSGVFKPYAGVSTAILIFTKGGTTE---R 407 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDI------YVSRENGKFSRMLDYRTFGY 475 V + + KR + + + D Y G S FG Sbjct: 408 VWFYDLQADGY---SLDDKRTELKGEGCNDLPDAIAQWRKYRQMVEGNISASTINTLFGD 464 Query: 476 RR-----IKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILKPMM 523 +R + V + + L +E K + L L + Sbjct: 465 KRKKAFVVPVEEIVANKYDLSINRYKEVEYQQEQYEEPKVILKRLKGLEQEILADLDELE 524 Query: 524 QQI 526 + Sbjct: 525 GML 527 >gi|261401230|ref|ZP_05987355.1| type I restriction enzyme M protein [Neisseria lactamica ATCC 23970] gi|269208818|gb|EEZ75273.1| type I restriction enzyme M protein [Neisseria lactamica ATCC 23970] Length = 533 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 93/564 (16%), Positives = 206/564 (36%), Gaps = 62/564 (10%) Query: 1 MTE--FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT +L + + G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQTKALIDSLKTICAHCGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNAELFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ + S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335 K+F + +SNPPF + +D +E E RF G+PKI Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKM 338 Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + V LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDNVVLIDASGLGKKIKDGKNQKTVLSREEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 + + ++ + FS ++ Y + + +D ++ E + S Sbjct: 449 CNTFTHKQAVEDFSVVVGYDEIKAKNYSLSAGQYFEVKIDYVDISAEEFEQKMAGFSADL 508 Query: 512 QSFWLDILKPMMQQIYPYGWAESF 535 + + + + ++I F Sbjct: 509 DKLFAESAE-LEKEIKDRLAMLKF 531 >gi|327459321|gb|EGF05667.1| type I restriction-modification system DNA-methyltransferase [Streptococcus sanguinis SK1] Length = 534 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 94/542 (17%), Positives = 208/542 (38%), Gaps = 73/542 (13%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAFGGSNIDL--ESFVKVAGYSFY 81 + ++ +L + L + L AV K Y ++D + + Sbjct: 28 EAGEYK--LLTQSFLYKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQ 85 Query: 82 NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123 E + TL +N E+ + + + IF E + Sbjct: 86 LKPEQFIETLHRKQNEDNFYEIFETTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDNI 145 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 ++ + I + I+ S ++E++I+ + + ++ TP Sbjct: 146 SDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + +L+ D +YDP+ G+G L + + + Sbjct: 206 SVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKTT 250 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 + Q++ ++ + +L L + + NI QG+T+ + ++ Y +SNPPF Sbjct: 251 VYSQDISQKS-----SNLLRLNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPPF 304 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGGG 354 + + +D VE + E RF G+PK S M LF+ H+ L+ G Sbjct: 305 KLDFSEWRDRVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSD----G 358 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 +AA+VL + F + IR+ L++N ++ +V++P+++F T + + + Sbjct: 359 QAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK- 415 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473 +G V LI+A++L T ++ ++ +++ ++ ++I++ ++ ++ FS + Y Sbjct: 416 ---NKGDVVLIDASNLGTKVKEGKNQKTVLSSEEEQKIVETFIKKKAVDDFSVTVSYEDI 472 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQQIYPY 529 + + +D + E + KLS L Q + + + +Q+ Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQSH-ALEQEIEEQMKGL 531 Query: 530 GW 531 + Sbjct: 532 KY 533 >gi|297587005|ref|ZP_06945650.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia magna ATCC 53516] gi|297574986|gb|EFH93705.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia magna ATCC 53516] Length = 489 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 71/366 (19%), Positives = 140/366 (38%), Gaps = 49/366 (13%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F ++ LL ++ I+ D +IYE +++ + + + +F T Sbjct: 114 FEDANNYMKDGVLLRQVINVIDEIDFS-DYEESHAFGDIYESILKEL--QSAGSSGEFYT 170 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKIP 237 PR V L ++ P + + D CGTGGFLT + + + Sbjct: 171 PRAVTDLMAIMI----------KPKIGEKMADFACGTGGFLTSWLKELKKQVKTVADEEA 220 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294 +G E + + +C+ MLI L+ NI ++L KD +F Sbjct: 221 YSNSIYGIEKKQFPYMLCITNMLIHDLDV-------PNIYHDNSLLKDILDYTDEDKFDV 273 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L NPP+G ++D + S+ + LF+ + +L+ G Sbjct: 274 ILMNPPYGGSEKEDVKNHFPQDLA------------SSETADLFMSVIMYRLKE----NG 317 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 RAA++L LF + + + I++ L+ + I+ +P +F T+I T + N Sbjct: 318 RAAVILPDGFLF--GSDNAKINIKKNLINKFNLHTIIRMPNSVFAPYTSITTNILFFDNT 375 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + ++ D+ +N K + + + +++D + +RE + + F Sbjct: 376 GKTKETWYYRM----DMPEGYKNF-SKTKPMKLEHFDKVVDWWNNREEIEIDGFYKSKKF 430 Query: 474 GYRRIK 479 + I Sbjct: 431 TAQEIV 436 >gi|210610695|ref|ZP_03288576.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787] gi|210152328|gb|EEA83334.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787] Length = 545 Score = 160 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 79/539 (14%), Positives = 193/539 (35%), Gaps = 86/539 (15%) Query: 28 HTDFGKVILPFTLL-RRLECAL--------EPTRSAVREKYLAFGGSNIDLESFV----- 73 +++ I+ L + L E + + + S D E + Sbjct: 30 SSEYK--IITEIFLYKFLNDKFLYEVQQAEESLKDSDNVEQALNDMSEDDYEMLMMLLPP 87 Query: 74 ---KVAGYSF----YNTSEYS-LSTLGSTNTRNNLESYIASFS------DNAKAIFEDFD 119 K+ F +N + L + + + + FS D + +F++ Sbjct: 88 ATAKLKKEHFISCLFNHKNDDKFNELFDSTLWDISNTNLDVFSVSTGSGDKIR-LFDEHL 146 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFM 178 + ++ + + I+E+LI+ + + + ++ Sbjct: 147 SQNVTESNRRSDFCKAMIDKLVTFSFADAFSQKYDFFATIFEYLIKDYNKDFGK-YAEYY 205 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + +++ T+YDP G+G + + + + Sbjct: 206 TPHSIASIIARIMVPEG--------TQNVTVYDPAAGSGTLVLALAHEIGESN------- 250 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292 + Q++ +++ L + ++ G TL + +F Sbjct: 251 -CTIYTQDISQKSNEFLR-----LNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGLMKF 304 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANK 345 Y +SNPPF + ++D + + RF G+P I + +FL H+ Sbjct: 305 DYIVSNPPFNVDFSDNRDTL---AGDIYKERFWAGVPNIPNKKKDSMAIYQMFLQHIIFS 361 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 ++ G +AA+V+ + L G +IR +++ ++ +V++P+++F T Sbjct: 362 MK---ENGCKAAVVVPTGFLTAG--TGIPKKIRERIVKERMLRGVVSMPSNIFATTGTNV 416 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRE-NGK 463 + L N K E+ L++A+ L T ++ +GK +R +++ ++ I+ + + E Sbjct: 417 SVVFLDNTKKYEQA---ILMDASKLGTKVKIDGKNQRTVLSPEEIEDIIHTFNNFESKDD 473 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDILKP 521 FS ++D Y +I+ + + + + +E ++ + ++ Sbjct: 474 FSVVVD-----YEKIEQKKCSFSAGQYFEVKIEYVELTQEEFKAKMDEYTEKLTELFAE 527 >gi|19881275|gb|AAM00879.1|AF486556_5 HsdM [Campylobacter jejuni] Length = 494 Score = 160 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 93/512 (18%), Positives = 181/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNDDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ ++ L+NPPFG K ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 MSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILRTSEEILNSLEENLKIQQEYLNELKSILK 494 >gi|189424479|ref|YP_001951656.1| N-6 DNA methylase [Geobacter lovleyi SZ] gi|189420738|gb|ACD95136.1| N-6 DNA methylase [Geobacter lovleyi SZ] Length = 477 Score = 160 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 85/441 (19%), Positives = 159/441 (36%), Gaps = 61/441 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ L+ + E S I + + L Sbjct: 34 MITLKILDD-----KDKELEILQEAYASPIPSAVQWRAWAADAEGMTGDELKEFIDLKLF 88 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ + + N +A+ F T ++ ++ ++ + I+ + + + Sbjct: 89 PALKN-LDISTGNKRALIIREIFEGTNNYMKNGTVIRQVLNELNQIDF-NSSDDRHIFGD 146 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE ++R S + +F TPR + TA++ +P + + DP CGTG Sbjct: 147 IYETILRDLQSAGN--YGEFYTPRALTEFMTAII----------NPRLGEKVLDPACGTG 194 Query: 218 GFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GFLT A+ ++ HG E +P + V M++ +E Sbjct: 195 GFLTCAIENIRRQDVKNVEDLQTLQSTIHGMEFKPLPFMLSVTNMILHDIEV-------P 247 Query: 275 NIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 N+ +L+++ R L+NPPFG D VE + Sbjct: 248 NVDYTDSLNREYTSIGAKDRVDVILANPPFGASVT---DGVETNFPLNY---------RT 295 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 ++ + LFL+ + L+ GGRAAIVL L G + IR+ LE + IV Sbjct: 296 TESADLFLLLMIRYLKD----GGRAAIVLPDGSL-TGD--GVKQRIRQHWLEGCNLHTIV 348 Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 LP +F ++AT L + + + + QL + K + I + Sbjct: 349 RLPNSVFQPYASVATNLLFFTKGEPTKEIWYWEHQLPEGVKSY-------SKTKPIQSAE 401 Query: 449 RRQILDIYVSRENGKFSRMLD 469 ++ + + +R+ + + Sbjct: 402 FNRLKEWWNNRQESDQAWRVS 422 >gi|19881250|gb|AAM00858.1|AF486552_4 HsdM [Campylobacter jejuni] Length = 494 Score = 160 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 92/512 (17%), Positives = 182/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ S NI + +TL+K D+ +++ L+NPPFG K ++ Sbjct: 258 MILH-------EVKSPNIIKTNTLNKKITDITQSEKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILRTSEEILNSLEENLKIQQEYLNELKSILK 494 >gi|19881226|gb|AAM00838.1|AF486548_5 HsdM [Campylobacter jejuni] Length = 494 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 93/512 (18%), Positives = 181/512 (35%), Gaps = 75/512 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L + I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREAINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ ++ L+NPPFG K ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +++ LL++ +E +++LP+ +F + + T + S K G + + Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 I K + + ++ L Y R+ S ++ + R + + ++ Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 L E + + + Q +L+ LK +++ Sbjct: 463 KILRTSEEILNSLEENLKTQQEYLNELKSILK 494 >gi|317505570|ref|ZP_07963481.1| type I restriction-modification system DNA-methyltransferase [Prevotella salivae DSM 15606] gi|315663318|gb|EFV03074.1| type I restriction-modification system DNA-methyltransferase [Prevotella salivae DSM 15606] Length = 505 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 89/443 (20%), Positives = 162/443 (36%), Gaps = 65/443 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E T K S I E + + S + L Sbjct: 33 MFFLK-VYDTQEETWEYKAAKEKKEFKSIIPEELRWRNWAIDEKDGSALT-GDLLLNFIN 90 Query: 98 NNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + L + + + K +FED + ++ LL ++ + IE D Sbjct: 91 DKLFPTLKNLAVTHETPRSKSIVKEVFEDLN-----QYMKNGILLRQVINIINEIEF-DD 144 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + +IYE +++ S + A +F TPR + L +P + T Sbjct: 145 ADDRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------NPKLGET 192 Query: 209 LYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 + D T GTGGFLT A+N++ + GQE +P + + + +L+ +E Sbjct: 193 VGDFTSGTGGFLTSALNYLNKQIKTTNDGRLFQNAAVGQEWKPLPYLLSITNLLLHDVE- 251 Query: 267 DPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 S NI+ +LS D + NPP+G + + Sbjct: 252 ------SPNIRHCDSLSTKMSDFKESDKVDVIAMNPPYGGSTDASVKSNFPMAF------ 299 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + S+ + LF++ + +L+ GRAA+++ LF A + I+ LL+ Sbjct: 300 ------RSSETADLFMVLIMYRLKKD----GRAAVIVPDGFLF--GADGAKLAIKSELLK 347 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG---- 438 + I+ LP +F T+IAT + +N K + + + EG Sbjct: 348 KFNLHTIIRLPGSIFAPYTSIATNILFFNNEK-ADGAEEGLSTKDIWFYRMDMPEGYKHF 406 Query: 439 KKRRIINDDQRRQILDIYVSREN 461 K R + + + I+D + R+ Sbjct: 407 SKTRSMKLEHCQPIIDWWNDRKE 429 >gi|255527615|ref|ZP_05394477.1| N-6 DNA methylase [Clostridium carboxidivorans P7] gi|296187658|ref|ZP_06856052.1| N-6 DNA Methylase [Clostridium carboxidivorans P7] gi|255508687|gb|EET85065.1| N-6 DNA methylase [Clostridium carboxidivorans P7] gi|296047615|gb|EFG87055.1| N-6 DNA Methylase [Clostridium carboxidivorans P7] Length = 498 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 159/455 (34%), Gaps = 89/455 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ + T + S E + L Sbjct: 35 LLFIKRLDDI-DNTNEKRANRIGKAFTSVFPEELMKWS-----------NFKHLDVNEMF 82 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVPDR 153 + + + F E+ F++ + + K LL + + GI + Sbjct: 83 DIVAQKVFPFIKTMGG--ENSSFTTEMKDAVFMIPKPSLLQESVRIIDGINME----DAD 136 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++YE+L+ + VS F TPR ++ + L+ +P + DP Sbjct: 137 TKGDLYEYLLSKLA--VSGVNGQFRTPRHIIRMMVELM----------NPCAEDKICDPA 184 Query: 214 CGTGGFLTDAMNHVADCG------------------------SHHKIPPILVPHGQELEP 249 CGT GFL ++ ++ + + + +G + +P Sbjct: 185 CGTAGFLVSSLEYILEKYTKPESIFTDEEGVVHNKIGDMMSSEEWEHFRTSMFYGFDFDP 244 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + +++ ++ + N+ Q TLSK ++ L+NPPF Sbjct: 245 SMVRIASMNLMLHSID-------NPNMVQNDTLSKRYEEENKYTLVLANPPFKGSI---- 293 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 G++ + + +LF+ + L + GGR A+++ LF Sbjct: 294 -------DKGDISKSLAAGASTTKTELLFMKLINRIL----DLGGRCAVIVPDGVLF--G 340 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428 + +IR+ L+EN+ +E ++++P+ +F ++T + + + E KV + T Sbjct: 341 STKAHKDIRKNLIENNALEGVISMPSGVFKPYAGVSTAVLMFTKGGETE---KVWFYDMT 397 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + KR I+D I++ + + K Sbjct: 398 ADG---FSLDDKRNPIDDSDIPNIIESWKKVKKDK 429 >gi|258546308|ref|ZP_05706542.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC 15826] gi|258518452|gb|EEV87311.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC 15826] Length = 536 Score = 160 bits (405), Expect = 6e-37, Method: Composition-based stats. Identities = 97/566 (17%), Positives = 205/566 (36%), Gaps = 66/566 (11%) Query: 1 MTE--FTGSAASLANFIWKNA-EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT +L + + G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQTKALIDSLKTICVNYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 K ++++ + +K Y + + L + FS Sbjct: 59 KKPDELIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118 Query: 110 NAKA-----IFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + +FE + R + L FS + I+E+L Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEVIFAQKFDFFA--TIFEYL 176 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I+ + S ++ TP V + +L+ +YDP+ G+G L + Sbjct: 177 IKDYNSNSGGKYAEYYTPHAVARIMADILVPE----AVRGQIRSVDVYDPSAGSGTLLMN 232 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 233 VAHAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTI 279 Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-- 335 K+F + +SNPPF + +D +E E RF G+PKI Sbjct: 280 LSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTD 336 Query: 336 -----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 LF+ H+ L+ G+AAIVL + F + +IR L+EN ++ + Sbjct: 337 KMEIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREHLVENKMLAGV 390 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 V++P+++F T + + + KV LI+A+ L I++ ++ +++ + + Sbjct: 391 VSMPSNIFATTGTNVSILFIDK----ANKNKVVLIDASGLGEKIKDGKNQKTVLSRAEEQ 446 Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I + + ++ + FS ++ Y + + +D ++ E + S Sbjct: 447 KICNTFTHKQVVEDFSVVVSYDEIKAKNYSLSAGQYFEVKIDYVDISADEFAQKMAEFSA 506 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESF 535 + + + + ++I F Sbjct: 507 DLDKLFTESAE-LEREIKDKLQRLQF 531 >gi|261867041|ref|YP_003254963.1| hypothetical protein D11S_0333 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412373|gb|ACX81744.1| hypothetical protein D11S_0333 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 534 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 85/501 (16%), Positives = 185/501 (36%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT +L + + G+ +F +I L + L + + E Sbjct: 1 MTELYFTEQTKTLIDSLKTICAHYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKILE 58 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-- 115 + +D+E K A ++ Y + + + + + +F Sbjct: 59 EKPGEPMEFVDMEIQSKTAVLKPEHSIRYLSQRQNDADFAKLFDDTLIDIAAHNAEVFAV 118 Query: 116 ------EDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + F + + + + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYIADENRRDDFCRALISKLADFSFEAVFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ D S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPQDVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLVLNNLVHSLNNVIQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335 K+F + +SNPPF + +D ++ RF G+PKI Sbjct: 282 PYHKDKVGRLKKFDFIVSNPPFKLDFSDFRDQLDSAENRE---RFFAGIPKIKAKDKDKM 338 Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+A+IVL + F + +IR +L+EN + +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKASIVLPTG--FITAQSGIDRKIREYLVENKMFAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + +V LI+A+ L I++ ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDQVVLIDASGLGEKIKDGKNQKTVLSREEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + ++ + FS ++ Y Sbjct: 449 CQTFTDKQVVENFSVVVGYDE 469 >gi|217975327|ref|YP_002360078.1| N-6 DNA methylase [Shewanella baltica OS223] gi|217500462|gb|ACK48655.1| N-6 DNA methylase [Shewanella baltica OS223] Length = 540 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 145/422 (34%), Gaps = 73/422 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +RRL+ L+ T + + I + F + + + Sbjct: 35 LLFIRRLDE-LQRTAERRAQATGIPVANPIFGPDEQALRWSHFKDKDPDVMMDIVQNQVF 93 Query: 98 NNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 +++ SF+++ K F +L L ++ + S I + Sbjct: 94 PKIKNLHDEGSFAEHMKDAI----FMIPSPKL-----LDQVVQLLSAINMD----DKDTK 140 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++YE+L+ + F TPR+++ + L+ P + T+ DP G Sbjct: 141 GDLYEYLLSKLQQSG--VNGQFRTPRNIIQMMVELM----------QPKLGDTICDPASG 188 Query: 216 TGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 T GFL A+ +V + + + + G + + + ML+ +E Sbjct: 189 TCGFLMAALEYVENRYKQEVNKPANRQHFNNAMFTGFDFDKSMLRIGAMNMLLHGIE--- 245 Query: 269 RRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + + +L D + + L+NPPF + D A + G+ Sbjct: 246 ----NPTVLYRDSLQDQGDANIREAYSLILANPPFKGSVDFDIIAPDLLRALGKNPTAKK 301 Query: 327 GLP---------------------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 P +LFL + L++ GGRAA+++ L Sbjct: 302 VAPKYKTEIDADGVETQVEVKAKGPTEKSELLFLALILRMLKV----GGRAAVIVPDGVL 357 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424 F + IR L+ +EA+++LP+ +F ++T + I + + KV Sbjct: 358 F--GSTKSHKSIREKLINEQKLEAVISLPSGVFKPYAGVSTAILIFTKTNSG-GTDKVWF 414 Query: 425 IN 426 + Sbjct: 415 YD 416 >gi|288573654|ref|ZP_06392011.1| type I restriction-modification system, M subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569395|gb|EFC90952.1| type I restriction-modification system, M subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 248 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 21/232 (9%) Query: 1 MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 M+ + +L+ +W+ A L G DF I P +RL + + Sbjct: 1 MSSKNENNNSVDLDIGTLSGHLWETANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYT 60 Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFS 108 E+ S+ D+E + F + S N + L+ I + Sbjct: 61 VALEE------SDGDVEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQAN 114 Query: 109 DN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + IF D +++ RL A LL + ++FS + L + ++ YE+LI++F Sbjct: 115 PDTLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFA 172 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 ++ A +F TPR VV L +L +P T G Sbjct: 173 DLTNKKAGEFYTPRSVVALMVRILAPKAGETIPAAPRTSCCRNTWTTSIAGT 224 >gi|295837452|ref|ZP_06824385.1| type I restriction-modification system, M subunit [Streptomyces sp. SPB74] gi|197699692|gb|EDY46625.1| type I restriction-modification system, M subunit [Streptomyces sp. SPB74] Length = 507 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 77/430 (17%), Positives = 140/430 (32%), Gaps = 72/430 (16%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY------SFYNTSEYSL 88 I ++RL+ TR K + S AG +F + Sbjct: 32 ITYLLFVKRLDEI--QTR-----KDRKARATGTPDPSPFFTAGQQDLRWQNFKVKDPEIM 84 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + L S A + GLL K+ GI + Sbjct: 85 YGIVADGLFPYLRRMGGDASTYAH------HMKDARFTIPGPGLLAKVVDLLDGISMDAS 138 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 +IYE+++ + + F TPR ++ L + PG Sbjct: 139 ----DTKGDIYEYMLAKIATSG--QNGQFRTPRHIIDLMVEM----------TRPGPRDV 182 Query: 209 LYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP CGT GFL A +++ H + HG + + + ML+ Sbjct: 183 ICDPACGTAGFLVQAASYLRRVHREDLLEAEHRGHFNEKMFHGFDFDTTMLRIGSMNMLL 242 Query: 262 RRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +E + +I+ +L + +R+ L+NPPF + D A + + Sbjct: 243 HGVE-------NPDIRYRDSLGESAAGEAERYSLILANPPFAGSLDHDSTAADLQR---- 291 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + + + GGRAA+++ LF A E+RR Sbjct: 292 -------IARTKKTE----LLFLALFLRLLKSGGRAAVIVPDGVLF--GATKAHRELRRV 338 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L+E+ ++A+V LP+ +F ++T + + + V + + Sbjct: 339 LVEDQQLQAVVKLPSGVFKPYAGVSTAILLFQRTDSG-GTDHVWFYDVRADGL---SLDD 394 Query: 440 KRRIINDDQR 449 KR + R Sbjct: 395 KRNDLLPADR 404 >gi|282883061|ref|ZP_06291662.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus lacrimalis 315-B] gi|281297118|gb|EFA89613.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus lacrimalis 315-B] Length = 280 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 127/292 (43%), Gaps = 33/292 (11%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300 GQE+ +C M + + + + +I++G TL L ++ F +SNPP Sbjct: 14 FFGQEINMTNFNLCRMNMFLHNVNYN-----NFSIKRGDTLLAPLHNDEKPFDAIVSNPP 68 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 + KW D D RF P L + F++H + L GRAAI Sbjct: 69 YSIKWVGDNDPT-----LINDIRFAPAGKLAPKNYADFAFILHALSYLSSK----GRAAI 119 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V + A E IR++L++N ++A++ LP +LFF T+IAT + +++ KTE Sbjct: 120 VCFPGIFYRKGA---EKTIRKYLVDNSFVDAVIQLPENLFFGTSIATCVLVMAKNKTE-- 174 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRR 477 KV I+A++ + + N I+ ++ +I+D + R+ ++ SR + Sbjct: 175 -NKVLFIDASNEFKKVTN----NNILEEENINKIVDEFRDRKEIEYFSRYVSRDEIAEND 229 Query: 478 IKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + + + + E + T K++ L ++ I++ + + Sbjct: 230 YNLSVSTYVEKEDTREKIDIKVLNKEIEETVEKINKL-RASINQIVRELEDE 280 >gi|194364814|ref|YP_002027424.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3] gi|194347618|gb|ACF50741.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3] Length = 527 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 90/533 (16%), Positives = 173/533 (32%), Gaps = 102/533 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLG 92 R L+ + V E+ G ++ G +F N S L Sbjct: 35 LMFARMLD-----MQEDVVERKAKRTGKPVERLFPASREGQLLRWKNFRNLSGKELHK-- 87 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK---ICKNFSGIELHPDT 149 + + N+ + S S ++ A L K + + Sbjct: 88 --HLKKNVYPFFTSLSTAGDKGGSGAALGHIGEYMQDADLEIKNESVLVAAVEMVNELPL 145 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 V +IYE+L+ + + F TPR ++ ++ +P + Sbjct: 146 TQTDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMVEVV----------APQPYEVV 193 Query: 210 YDPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILVPHGQEL 247 DP+CGT GFL M ++ ++ K + G + Sbjct: 194 CDPSCGTAGFLARTMEYLNRTHSSEAGTLTDEDGNSSYTGDLLDAYRKHINSQMFWGFDF 253 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPF 301 + V ML+ + NI TL+K F L+NPPF Sbjct: 254 DTTMLRVSSMNMLLHGV-------SGANINYQDTLNKSIKEHFPRQEENFFDVVLANPPF 306 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 E L +LF+ H+ L+ GGRAA+++ Sbjct: 307 --------KGSLDEANVNPD---VLALVATKKTELLFVAHILRSLK----LGGRAAVIVP 351 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 LF + ++RR LLEN+ +E +++LP+ +F ++T + + + E Sbjct: 352 DGVLF--GSSKAHQQLRRELLENNQLEGVISLPSGVFRPYAGVSTAILLFTKGGQTE--- 406 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILD------IYVSRENGKFSRMLDYRTFG 474 +V + + KR + + + D Y + + FG Sbjct: 407 RVWFYDLRADGY---SLDDKRTPLKGEGSNDLPDAIAQWAAYRKLVERNARKQTINKQFG 463 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-LHQSFWLDILKPMMQQI 526 R+ + +F++ +A + D++ + HQ + + ++Q++ Sbjct: 464 DRK-------QKAFVVPAEAIAANKYDLSINRYKEVEHQQVQYEDPRQILQRL 509 >gi|148544649|ref|YP_001272019.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016] gi|184154002|ref|YP_001842343.1| type I restriction-modification system M subunit [Lactobacillus reuteri JCM 1112] gi|227363771|ref|ZP_03847878.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri MM2-3] gi|325682982|ref|ZP_08162498.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri MM4-1A] gi|148531683|gb|ABQ83682.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016] gi|183225346|dbj|BAG25863.1| type I restriction-modification system M subunit [Lactobacillus reuteri JCM 1112] gi|227071128|gb|EEI09444.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri MM2-3] gi|324977332|gb|EGC14283.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri MM4-1A] Length = 517 Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats. Identities = 68/388 (17%), Positives = 140/388 (36%), Gaps = 55/388 (14%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V ++YE+L+ + + F TPR ++ + L+ +P + + DP Sbjct: 170 DVRGDVYEYLLGKLSTAG--RNGQFRTPRHIIKMIVELM----------NPQVTDKICDP 217 Query: 213 TCGTGGFLTDAMNHVADCGSHH---KIPPILVPH-----GQELEPETHAVCVAGMLIRRL 264 GT GFL ++ + D H G + + + ML + Sbjct: 218 AAGTAGFLVESAEFLQDKKKEEIFYNKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGV 277 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + + N++ +LS+ + ++NPPF K D ++V K+ Sbjct: 278 D-------NPNVEYQDSLSEQNTDRDEYSLIMANPPF--KGSLDYNSVSKDLLK------ 322 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + K +LF+ L++ GGR A ++ LF + IR+ ++EN Sbjct: 323 ---ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVLF--GSSKAHKSIRKEIIEN 373 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 + +EA++++P+ +F ++T + I + KV + T + KR Sbjct: 374 NNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYDMTADG---FSLDDKRTP 429 Query: 444 INDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 + ++ I++ + R+ S M+D + + Sbjct: 430 VKENDIPDIIERFNHLDKEVDRKKTNKSFMVDKKDIVDNDYDLSINRYKEIEYKPVKYPP 489 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ 525 E I + + L LK +++ Sbjct: 490 TEEIIAEIEKLDKEANDALQELKALLKD 517 >gi|238809498|dbj|BAH69288.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 503 Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats. Identities = 83/442 (18%), Positives = 163/442 (36%), Gaps = 63/442 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96 L+ + A E + + Y + + + + +S + L L + Sbjct: 36 MFFLK-VYDAKEREWEFIDKDYKSLIPNELKWST-WATDDHSNNVITGEKLLDLVNNKLF 93 Query: 97 ---------RNNLESYIASFSDN--AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 +N E +++ K F F ++ LL ++ + ++ Sbjct: 94 PFLKGETVTLSNGEQAFYGINEHTILKQKIARFVFEDAQNYMKDGVLLRQVINVINELDF 153 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 D IYE +++ + + A +F TPR V ++ +P + Sbjct: 154 A-DYKEKHEFGTIYETILK--SLQSAGNAGEFYTPRAVTDFMVKMI----------NPKL 200 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + D CGTGGFLT ++ H+ D + +G E +P + +C+ MLI Sbjct: 201 GEKIADFACGTGGFLTSSLKHLEDQKKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHD 260 Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 ++ I ++L K D +F L NPP+G ++ Sbjct: 261 VD-------EPKIFHDNSLEKRVQDYTEADKFDIILMNPPYGGSEKEAVK---------- 303 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 F L + S+ + LF+ + +L+ GR A++L LF A + + I+ Sbjct: 304 -NNFPADL-RSSETADLFMNVIMYRLKKK----GRCAVILPDGFLF--GADNAKVAIKTK 355 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL+ + I+ +P +F T+I T + + E ++ D+ +N Sbjct: 356 LLKEFNLHTIIRMPHSVFAPYTSITTNILFFDHTHPTEEVWFYRM----DMPEGYKNF-S 410 Query: 440 KRRIINDDQRRQILDIYVSREN 461 K + I + Q++ + +RE Sbjct: 411 KTKPIQLEHFDQVIKWWDNREE 432 >gi|91217329|ref|ZP_01254289.1| type I restriction-modification system, M subunit [Psychroflexus torquis ATCC 700755] gi|91184437|gb|EAS70820.1| type I restriction-modification system, M subunit [Psychroflexus torquis ATCC 700755] Length = 479 Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats. Identities = 85/495 (17%), Positives = 174/495 (35%), Gaps = 64/495 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ E + Y + N+ +++ + +L T+ Sbjct: 34 MLFMKIFADK-EEEWEITIDNYESPIPENLKWQNWAADDEG----LTGDALMDFIETDLF 88 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ + S A+ I F T ++ L ++ + I+ + T + ++ Sbjct: 89 PALKNLDITISPQAR-IIRAV-FDDTYNYMKNGTLFRQVINVINEIDFNNST-DSHLFND 145 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE +++ + + + ++ TPR V ++ +P + ++ DP CGTG Sbjct: 146 LYETILKEL--QSAGSSGEYYTPRAVTQFMVDMV----------NPQLGESVLDPACGTG 193 Query: 218 GFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT ++HV + G E +P H +C +++ + Sbjct: 194 GFLTCTIDHVRAQVKDATDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDL-------PV 246 Query: 276 IQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 +++ + LSK D T + LSNPPFG ++G F + Sbjct: 247 VRRDNLLSKPYADWGTKDKLDIILSNPPFGGVE-----------EDGTETNFPAKF-RTK 294 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LFL + L+ GR AIVL LF + ++ LL+ + IV Sbjct: 295 ETADLFLALIIKLLKNK----GRCAIVLPDGTLFGEGMK---TRLKEELLDKCNLHTIVR 347 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T L + + K + I+ + Sbjct: 348 LPNGVFNPYTGIKTNLLFFEKGTPTKEVWYY-----EHPYPKGAVSYNKTKPIHIKEFDV 402 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 + +RE+ KFS+ ++ + + + LD + + ++ Sbjct: 403 EKAWWNNREDEKFSKNA-------WKVSIEEIKKRGYNLDIKNPHQEVDTLASPEVLLEK 455 Query: 512 QSFWLDILKPMMQQI 526 + + + +I Sbjct: 456 YTATEQKISTIQDKI 470 >gi|327191125|gb|EGE58171.1| N-6 DNA methylase [Rhizobium etli CNPAF512] Length = 484 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 152/458 (33%), Gaps = 81/458 (17%) Query: 38 FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ ++ LE TR + + D E A +F N + L Sbjct: 33 MFFLKIMDDQDQELELTRDDYVSPIPEKFQWRSWAADPEGITGEALLTFVNIELF--PAL 90 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + + +FE ++ L+ ++ S ++ Sbjct: 91 KALPVSAQPGDR----RRVVRDLFE-----DAYNYMKSGQLIRQVVNKISDVDF-NSLTE 140 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + IYE ++ S + A ++ TPR + + P TL+D Sbjct: 141 RQHFGEIYEQILNDLQSAGN--AGEYYTPRALTSFMVDRI----------DPTPGETLFD 188 Query: 212 PTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 P CGTGGFL+ A+ H+ + E +P H +CV ML+ +E Sbjct: 189 PACGTGGFLSCAIRHMERNHVRTPEQRERMQAGLRAVEKKPLPHMLCVTNMLLHGIEDPS 248 Query: 269 RRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 ++ +TL++ +R L+NPPFG ++G F Sbjct: 249 F------VRHDNTLARPLISWGKDERVDIILTNPPFG-----------GREEDGIENNFP 291 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + + + LFL + L+ GGRAA+VL LF + ++ LL Sbjct: 292 --TFRTKETADLFLALIVRLLKP----GGRAAVVLPDGSLFGEGTK---TRLKEHLLGEC 342 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---- 440 + IV LP +F +I T L + W EG+K Sbjct: 343 NLHTIVRLPNSVFKPYASIGTNLLFFEKGTPTKDI---------WYWEHRVPEGQKAYSM 393 Query: 441 RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTF 473 + I + + +D + R+ G + + Sbjct: 394 TKPIRREHLQDCVDWWGGRERKDRQEGPQAWRVKLEEV 431 >gi|319777321|ref|YP_004136972.1| type i restriction-modification system, m subunit [Mycoplasma fermentans M64] gi|318038396|gb|ADV34595.1| Type I restriction-modification system, M subunit [Mycoplasma fermentans M64] Length = 500 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 83/442 (18%), Positives = 163/442 (36%), Gaps = 63/442 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96 L+ + A E + + Y + + + + +S + L L + Sbjct: 33 MFFLK-VYDAKEREWEFIDKDYKSLIPNELKWST-WATDDHSNNVITGEKLLDLVNNKLF 90 Query: 97 ---------RNNLESYIASFSDN--AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 +N E +++ K F F ++ LL ++ + ++ Sbjct: 91 PFLKGETVTLSNGEQAFYGINEHTILKQKIARFVFEDAQNYMKDGVLLRQVINVINELDF 150 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 D IYE +++ + + A +F TPR V ++ +P + Sbjct: 151 A-DYKEKHEFGTIYETILK--SLQSAGNAGEFYTPRAVTDFMVKMI----------NPKL 197 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + D CGTGGFLT ++ H+ D + +G E +P + +C+ MLI Sbjct: 198 GEKIADFACGTGGFLTSSLKHLEDQKKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHD 257 Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 ++ I ++L K D +F L NPP+G ++ Sbjct: 258 VD-------EPKIFHDNSLEKRVQDYTEADKFDIILMNPPYGGSEKEAVK---------- 300 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 F L + S+ + LF+ + +L+ GR A++L LF A + + I+ Sbjct: 301 -NNFPADL-RSSETADLFMNVIMYRLKKK----GRCAVILPDGFLF--GADNAKVAIKTK 352 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 LL+ + I+ +P +F T+I T + + E ++ D+ +N Sbjct: 353 LLKEFNLHTIIRMPHSVFAPYTSITTNILFFDHTHPTEEVWFYRM----DMPEGYKNF-S 407 Query: 440 KRRIINDDQRRQILDIYVSREN 461 K + I + Q++ + +RE Sbjct: 408 KTKPIQLEHFDQVIKWWDNREE 429 >gi|261417778|ref|YP_003251460.1| N-6 DNA methylase [Geobacillus sp. Y412MC61] gi|319767409|ref|YP_004132910.1| N-6 DNA methylase [Geobacillus sp. Y412MC52] gi|261374235|gb|ACX76978.1| N-6 DNA methylase [Geobacillus sp. Y412MC61] gi|317112275|gb|ADU94767.1| N-6 DNA methylase [Geobacillus sp. Y412MC52] Length = 634 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 86/410 (20%), Positives = 150/410 (36%), Gaps = 54/410 (13%) Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128 F+++ + E SL + +++ + + + ++FS RL Sbjct: 36 KFLELDKERYSLPDELSLGVILKEGAFLAEKVKAVLNEIEAHVPFLKGVYEFSDLFGRLS 95 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 LY + + + E L G+ + +TP V L Sbjct: 96 -NNTLYHLLSRIHSFAFTKEQWKQWI-----ESLFVYAGNMAGVEGVELITPAGVNELGI 149 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 LL YD G G L A + + +GQE+ Sbjct: 150 RLLNMEGGE-----------FYDGASGLSGTLCAASEYARRHHCE------VALYGQEIN 192 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKK 304 A+ +L + +G TL++ F K+F Y + N PFG + Sbjct: 193 QRAWALGKLRLLFH-------DRTDARLAKGDTLTEPAFVEGNKLKKFDYIMMNFPFGMR 245 Query: 305 WEKDKDAVEKEHKNGELGRFGPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + + + RF G LP+ S M F++H + L+ G+A +V+++ Sbjct: 246 INSYEQLMNDRYD-----RFVYGRLPRTS-ADMAFILHALSSLKE----NGKAVLVVTNG 295 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 LF G E+ IR LL DLIE+++ALP+ L I L +L+ K+ ER G + Sbjct: 296 TLFRGGP---EAVIREHLLAADLIESVIALPSSLLDGAAIQINLLVLNKNKSAEREGNIL 352 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 INA + + R + + + +I+ IY + S+ + R Sbjct: 353 FINAENYYGERRRGRR---YLRQEDIERIVAIYHEGLEIDEVSKFVSVRE 399 >gi|291613558|ref|YP_003523715.1| restriction modification system DNA specificity domain protein [Sideroxydans lithotrophicus ES-1] gi|291583670|gb|ADE11328.1| restriction modification system DNA specificity domain protein [Sideroxydans lithotrophicus ES-1] Length = 815 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 83/495 (16%), Positives = 168/495 (33%), Gaps = 71/495 (14%) Query: 59 YLAFGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 Y + + E SF+ + Y + L + N +A +S+ + E Sbjct: 37 YKFMDDMDAEAEEL--GGKRSFFAGEYARYGWAKLMAPNMGG--FDVLALYSEAIGKMNE 92 Query: 117 DFDFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + + K L + + F + + + +E+L+ GS+ Sbjct: 93 NPGIPTLFRDIFKNAYLPYRDPETLRIFLKEINYFTYDHSEKLGDAFEYLLSVLGSQG-- 150 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG- 231 A F TPR ++ ++ P + DP CGT GFL A H+ Sbjct: 151 DAGQFRTPRHIIDFMVEIV----------DPQKGERILDPACGTAGFLISAWKHILKHNT 200 Query: 232 ---------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + HG ++ P+ + + + + ++ + TL Sbjct: 201 KKNLGDQLTPEQRAYIAANVHGYDISPDMVRLSLVNLYLHGF-------TDPHVVEYDTL 253 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + + + L+NPPF + + RF + +LF+ ++ Sbjct: 254 TSEEKWNETADVILANPPF-MSPKGGIKPHK---------RFSVQATRS---EVLFVDYI 300 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FR 400 A L GRAAI++ +F S ++R+ L++N L+ A+++LP+ +F + Sbjct: 301 AEHLSP----NGRAAIIVPEGIIFQSG--SAYKQLRQMLVKNSLV-AVISLPSGVFNPYS 353 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR- 459 + T + +L +R +V + + N G +RR + Y++ Sbjct: 354 -GVKTSILLLDKW-LAKRTSEVLFVKVENDG---FNLGAQRRAMAGSGLPDAAAAYLAFR 408 Query: 460 --ENGKFSRMLDYRTFGYRRIKVLRPLRMS--FILDKTGLARLEADITWRKLSPLHQSFW 515 + + D F + L + + L EA + L P Sbjct: 409 HSQEDVTPTIFDSSQFRNAHVVEKTRLGENGDWNLSGERYRIDEARTSSFNLMPFESVCT 468 Query: 516 LDILKPMMQQIYPYG 530 L+ + + G Sbjct: 469 LEYGSSLPKSERRDG 483 >gi|313668371|ref|YP_004048655.1| Type I restriction-modification system DNA methylase [Neisseria lactamica ST-640] gi|313005833|emb|CBN87288.1| putative Type I restriction-modification system DNA methylase [Neisseria lactamica 020-06] Length = 533 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 87/535 (16%), Positives = 195/535 (36%), Gaps = 58/535 (10%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-----SFVKVAGYSFY 81 +F +I L + L + +RE+ ++++ + +K Y Sbjct: 29 DGNEFK-IISQAFLYKFLNDKYDFEVKQIREEKPDEPIEFVNMDIEGKTAVLKPEHSIKY 87 Query: 82 NTSE---YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL----LY 134 + + L + FS + + F + G Sbjct: 88 LSERQNGADFAKLFDDTLTDIAACNAELFSVKTEGGAKIVLFERISQYITDEGRRDDFCR 147 Query: 135 KICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + +G + I+E+LI+ + S ++ TP V + +L+ Sbjct: 148 ALISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVP 207 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 + S +YDP+ G+G L + + + + + + Q++ ++ Sbjct: 208 EEVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSSN 255 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKD 308 + L + N+ QG+T+ K+F + +SNPPF + Sbjct: 256 LLR-----LNLILNNLVHSLNNVVQGNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSDF 310 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLS 361 +D +E E RF G+PKI LF+ H+ L+ G+AAIVL Sbjct: 311 RDQLEGEENRE---RFFAGIPKIKAKDTDKMEIYQLFIQHILFSLKE----NGKAAIVLP 363 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 + F + +IR +L+EN ++ +V++P+++F T + + + Sbjct: 364 TG--FITAQSGIDKKIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK----ANKDN 417 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKV 480 V LI+A+ L I++ ++ +++ ++ ++I + + ++ + FS ++ Y + + Sbjct: 418 VVLIDASGLGKKIKDGKNQKTVLSREEEQKICNTFTHKQAVEDFSVVVGYDEIKAKNYSL 477 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 +D ++ E + S + + + + ++I F Sbjct: 478 SAGQYFEVKIDYVDISAEEFEQKMAGFSADLDKLFAESAE-LEKEIKDRLAMLKF 531 >gi|153815628|ref|ZP_01968296.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756] gi|145847059|gb|EDK23977.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756] Length = 489 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 68/451 (15%), Positives = 162/451 (35%), Gaps = 67/451 (14%) Query: 47 ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEY-------SLSTLGSTNTRN 98 +E + K + ++I++ + S + S + + + Sbjct: 28 VIEQLTYLMFAKQIDEREADIEMAELLSGEKQSHIFGESREEQALRWRNFKGMEARALHK 87 Query: 99 NLES----YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 + ++ + + N + F + ++ + L K+ + D + Sbjct: 88 HFVDRVFIFLINLNSNENSAFSRY-LKHATFKINEPLALQKVVAGLEDL-FENDIKDLDM 145 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++YE+++ + + F TP+ + + L++ P + DP C Sbjct: 146 QGDLYEYMLGKLN--SAGRLGAFRTPKHIRDMMVKLMM----------PTPDMKICDPAC 193 Query: 215 GTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 GT GFL + ++ + + G + + + +++ + Sbjct: 194 GTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDETMCRLSCMNLMLHSV---- 249 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 ++ + + ++SKD + L+NPPF K + KE+ N L + Sbjct: 250 ---INPQLNKQDSVSKDYQVKDAYDLILANPPF-------KGTINKENINESL----LAI 295 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 + +LF+ L + GGR A ++ LF + +R+ L+EN +E Sbjct: 296 TNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLF--GSSKAHKNLRKELIENQYLE 349 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 A++++P+ +F ++T + I + KV + + KR+ + ++ Sbjct: 350 AVISMPSGVFKPYAGVSTAILIFTKT-NGTGTDKVWFYDMKADGY---SLDDKRQPVQEN 405 Query: 448 QRRQILDIYV------SRENGKFSRMLDYRT 472 I++ + RE + S M+D + Sbjct: 406 DIPDIIERFHKKENEEDRERTEQSFMVDKQE 436 >gi|224543620|ref|ZP_03684159.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM 15897] gi|224523446|gb|EEF92551.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM 15897] Length = 494 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 80/511 (15%), Positives = 175/511 (34%), Gaps = 77/511 (15%) Query: 33 KVILPFTLLRRLECALE-PTRSAV--REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89 VI FT L ++ E T+ L + G + +++ + Sbjct: 35 DVIEQFTYLMYMKQLDEAETKEEADCLLYGLEYDGLFPKDKPYLRW----------HHFK 84 Query: 90 TLG-STNTRNNLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIEL 145 +G + + + F N K E I ++ LL K+ G+ Sbjct: 85 DIGSADKMYQIMNDELFPFIKNLKGDGESSYARFMRDAIFKIPTPNLLQKVVTGIEGL-- 142 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 +T + ++YE+L+ + + F TPR ++++ L+ P Sbjct: 143 --NTEEADIKGDLYEYLLNKLNNSG--TNGQFRTPRHIINMMVNLV----------KPVP 188 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAG 258 T+ DP GT GFL A ++ + + + +G +++ + Sbjct: 189 TDTICDPAMGTAGFLIGAEEYLREKHEELFLDDKLKEHFNNKMFNGFDMDSTMLRIGAMN 248 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ++ ++ + I+ +LS+ ++ L+NPPF + + A Sbjct: 249 LISHYVD-------NPQIEYRDSLSQQNIDENKYSLILANPPFKGSLDYEVVAENL---- 297 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + K +LF+ L GGR A ++ LF + IR Sbjct: 298 -------LSVCKTKKTELLFIALFLRSL----QVGGRCACIVPDGVLF--GSSKAHKSIR 344 Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 + L+EN+ + A++++P+ +F ++T + + + T V + + + Sbjct: 345 KELVENNQLHAVISMPSGVFKPYAGVSTAILVFTKT-TTGGTDNVWFYD---MKADGLSL 400 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 KR + ++ I+ Y + K + + F + + L Sbjct: 401 DDKRSPVEENDIPDIIHRYEHLDEEKDRKRTEQSFF----VPKEEIAENDYDLSINKY-- 454 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 +I + K+ L ++ + ++I Sbjct: 455 --KEIVYEKVEYRPTHEILGDIEALNKEIEE 483 >gi|134046196|ref|YP_001097681.1| N-6 DNA methylase [Methanococcus maripaludis C5] gi|132663821|gb|ABO35467.1| N-6 DNA methylase [Methanococcus maripaludis C5] Length = 499 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 79/519 (15%), Positives = 174/519 (33%), Gaps = 89/519 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95 ++R+E ++ + S S K + S+++ + Sbjct: 35 LIFMKRMED-------EDIKREQSSRLSGETHVSIFKDNENMKW--SKWTNMEGKEMLNH 85 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 R+N+ ++ S + K + ++ + + A LL + K + + Sbjct: 86 VRDNVFPFLRSLGE--KDSLYNTYMNNAVFAIPNASLLVEAVKIVENLHI--KEQNRDAK 141 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++YE+L+ + F TPR ++ + L P + + DP CG Sbjct: 142 GDLYEYLLSELKTAGK--NGQFRTPRHIIKMMVEL----------TDPDVGDKICDPACG 189 Query: 216 TGGFLTDAMNHVADCG------------------------SHHKIPPILVPHGQELEPET 251 T GFL A ++ H +G E + Sbjct: 190 TAGFLIAAYEYLLKKHSSAEFIKIDEDGNEYGYKGDKLDSKGHDFLRNETFYGSEFDQTM 249 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + + +++ +E + NI Q ++L + ++ L+NPPF +K + Sbjct: 250 VRIALMNLMMHGIE-------NPNIFQKNSLVECDKYKGHYNVILANPPFKGSVDKSEIE 302 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 + +LFL + N L GGR A+++ LF Sbjct: 303 GNFTTTTTKT-------------ELLFLELMYNLL----TIGGRCAVIIPDGVLF--GNS 343 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430 +IR +L+N ++A++++P+ +F ++T + I + + + K+ + + Sbjct: 344 KAHKQIRERILKNCRLDAVISMPSGVFKPYAGVSTGILIFTKGEPTK---KIWFYD---M 397 Query: 431 WTSIRNEGKKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 KR I+ I++ + +R N F + V + F Sbjct: 398 QADGFTLDDKRNKIDGKGDIPDIIERFKNRFNEPNDDKTKKHFF----VPVEEIFKNDFD 453 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 L + ++ + + Q+ L + + + Sbjct: 454 LSLSKYKKINYEEVEYDDPKVIQNRILKLELGIQKNFEE 492 >gi|301059619|ref|ZP_07200528.1| N-6 DNA Methylase [delta proteobacterium NaphS2] gi|300446265|gb|EFK10121.1| N-6 DNA Methylase [delta proteobacterium NaphS2] Length = 601 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 81/427 (18%), Positives = 157/427 (36%), Gaps = 78/427 (18%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES---------FVKVAGYSFYNTSE 85 I +R+L AL+ R A ++ + G + ++ + + N + Sbjct: 32 ITYLLFIRQL-KALDRARVAGEKESIYHKGPDDPEDADFEKCRWSYIRQNPSFQLLNDTV 90 Query: 86 YSLSTLGSTNTR--NNLESYIASFSDNAKA---IFEDFDFSSTIARLEKAGLLYKICKNF 140 + N ++ + S I + + L++A L F Sbjct: 91 FPWLRSLEDRIGSGQNGDTTLGRISGRLSDAYFILD----VNKAETLKRAVSLID--DLF 144 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 ++ +V +M +I+E+L+ F TPR V+ LL Sbjct: 145 RQLDTR--SVNSDIMGDIFEYLLEEVKESGK--NGQFRTPRHVIRFMVQLL--------- 191 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI----------------------PP 238 P + +T+ DP CG+GGFL +++ H + + Sbjct: 192 -EPELGKTILDPACGSGGFLLNSLLHWKAANTDEGVLRLEWDGAPHDTFPVWPQGKQYNF 250 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCL 296 G + + + +++ LE + + Q +LSK L + + Y L Sbjct: 251 SSFFRGYDNDRTMVRIAWMNLILHDLE-------APEVHQLDSLSKRLSDDESGAYDYIL 303 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPKISDGSMLFLMHLANKLELPPNGGGR 355 +NPPF ++D + + R G G +P + +LF+ + + L GGR Sbjct: 304 ANPPFTGNVDRDDLSENWQR----FPRSGKGAVPLTTKSELLFVWLMLDLL----INGGR 355 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414 AA+++ LF + E+RR LL + +EA+V+LP ++F + + T + + Sbjct: 356 AAVIVPDGVLF--GSTKAHRELRRQLLFENTLEAVVSLPPNMFQPYSGVKTSILLFQKAG 413 Query: 415 TEERRGK 421 R + Sbjct: 414 EPAARSQ 420 >gi|302879962|ref|YP_003848526.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2] gi|302582751|gb|ADL56762.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2] Length = 540 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 168/471 (35%), Gaps = 88/471 (18%) Query: 36 LPFTLLRRLECALEPT---RSAVREK-YLAFGGSNIDLESFVKV--AGYSFYNTSEYSL- 88 L F L ++ ++ V ++ Y + L + + + S + Sbjct: 33 LSFLFFFYLIEGIDAENTMKAKVMKQPYESLFAGEWTLRNPLNAPESDSKTITKSRFKWS 92 Query: 89 ---STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIE 144 L + + + F F+F + +++ +L ++ G+ Sbjct: 93 VWAKGLSGESLVRFVRDEVFPFFAEVAE-RSAFNFMNGARLTIDEPTVLTQVVNLVDGL- 150 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 D +++EH++R+ F TPR V+ +L P Sbjct: 151 -RLDQADADTKGDLFEHVLRQIKQAG--ELGQFRTPRHVIRAIVEML----------DPK 197 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG--------------------------SHHKIPP 238 + T+YDP GT GFL A NH+ + + Sbjct: 198 IGETIYDPAAGTAGFLAAAYNHIRLANSSPSGISDAESDGKLQKRGIGDKLSAAQVSVLQ 257 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-------LFTGKR 291 +G +++P+ + + +R L + ++ G T ++D + Sbjct: 258 NSTFYGNDVDPKMVRLATMNLTLRGLPNVRI-----QLRNGLTTTQDNERKAELGLPLEG 312 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 +H L+NPPF + DKD + E K G + +LFL ++ + L Sbjct: 313 YHVVLANPPFSGRV--DKDRIVDEVKVGT----------STATEILFLKYMMDCLRP--- 357 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GGR +++ LF + E+RR L+EN+ +EA+++LP +F + + T + Sbjct: 358 -GGRCGVIIPEGVLF--GSTGAHKELRRQLIENNTVEAVLSLPGGVFQPYSGVKTSVLFF 414 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 K KV ++A + + + I D + D Y+SR+ Sbjct: 415 ---KKGGTTDKVMFLHADNDGYKM--DANHDTPIAADDLPMLADAYLSRKE 460 >gi|317502417|ref|ZP_07960581.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA] gi|331090322|ref|ZP_08339206.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896155|gb|EFV18262.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA] gi|330401457|gb|EGG81042.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium 3_1_46FAA] Length = 489 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 76/510 (14%), Positives = 182/510 (35%), Gaps = 80/510 (15%) Query: 47 ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEY-------SLSTLGSTNTRN 98 +E + K + ++I++ + S + S + + + Sbjct: 28 VIEQLTYLMFAKQIDEREADIEMAELLSGEKQSHIFGESREEQALRWRNFKGMEARALHK 87 Query: 99 NLES----YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 + ++ + + N + F + ++ + L K+ + D + Sbjct: 88 HFVDRVFIFLINLNSNENSAFSRY-LKHATFKINEPLALQKVVAGLEDL-FENDIKDLDM 145 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++YE+++ + + F TP+ + + L++ P + DP C Sbjct: 146 QGDLYEYMLGKLN--SAGRLGAFRTPKHIRDMMVKLMM----------PTPDMKICDPAC 193 Query: 215 GTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 GT GFL + ++ + + G + + + +++ + Sbjct: 194 GTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDETMCRLSCMNLMLHSV---- 249 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 ++ + + ++SKD + L+NPPF K + KE+ N L + Sbjct: 250 ---INPQLNKQDSVSKDYQVKDAYDLILANPPF-------KGTINKENINESL----LAI 295 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 + +LF+ L + GGR A ++ LF + +R+ L+EN +E Sbjct: 296 TNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLF--GSSKAHKNLRKELIENQYLE 349 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 A++++P+ +F ++T + I + KV + + KR+ + ++ Sbjct: 350 AVISMPSGVFKPYAGVSTAILIFTKT-NGTGTDKVWFYDMKADGY---SLDDKRQPVQEN 405 Query: 448 QRRQILDIYV------SRENGKFSRMLDYRTF---GY----RRIKVLRPLRMSFILDKTG 494 I++ + RE + S M+D + GY + K + + + + + Sbjct: 406 DIPDIIERFHKKENEEDRERTEQSFMVDKQEIIDNGYDLSINKYKKIEYVPVEYPPTEEI 465 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQ 524 LA +E KL+ ++ + + Sbjct: 466 LAEIE------KLNEEITKETAELRALLRK 489 >gi|190150799|ref|YP_001969324.1| type I restriction-modification system, M subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264082|ref|ZP_07545679.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915930|gb|ACE62182.1| type I restriction-modification system, M subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870560|gb|EFN02307.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 489 Score = 158 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 77/433 (17%), Positives = 160/433 (36%), Gaps = 53/433 (12%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + A E + + Y + + +++ K + L + Sbjct: 34 LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91 Query: 99 NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ I++ + + I F ++ LL ++ I + Sbjct: 92 ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE++++ + + A +F TPR V ++ P + + D CGTG Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A+ + +G E + H +C+ +L+ ++ + N Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250 Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + +TL KD +F L NPP+G + F L + S Sbjct: 251 VHHDNTLEKPVKDYTENDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR AIVL LF + + I++ L+ + ++ Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKMAIKQKLMSEMNLHTVIR 352 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T+I T + N + + +L D+ +N K + + + + Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPQGYKNF-SKTKPMKLEHFNE 407 Query: 452 ILDIYVSRENGKF 464 +++ + +R+ + Sbjct: 408 VMEWWHNRQAIEI 420 >gi|319955096|ref|YP_004166363.1| site-specific DNA-methyltransferase (adenine-specific) [Cellulophaga algicola DSM 14237] gi|319423756|gb|ADV50865.1| Site-specific DNA-methyltransferase (adenine-specific) [Cellulophaga algicola DSM 14237] Length = 476 Score = 158 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 82/447 (18%), Positives = 153/447 (34%), Gaps = 69/447 (15%) Query: 38 FTLLRRLECALEP------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 ++ E + ++L + D E A F T + Sbjct: 34 MLFMKIFADKEEEWEITIDDYQSPIPEHLKWQNWAADDEGLTGDALMEFIETELF----- 88 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 L+ + S AK I F T ++ L ++ + I+ D+ Sbjct: 89 ------PALKELDITLSPQAK-IIRSV-FDDTYNFMKNGTLFRQVINVINQIDF-NDSKE 139 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 V +++YE +++ + + + ++ TPR V ++ +P + ++ D Sbjct: 140 SHVFNDLYETILKDL--QSAGSSGEYYTPRAVTQFMVDII----------NPQLGESVLD 187 Query: 212 PTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P CGTGGFLT ++HV + + G E +P H +C +++ + Sbjct: 188 PACGTGGFLTCTIDHVRNQVKDYTQRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDL--- 244 Query: 270 RDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +++ + LSK D + LSNPPFG ++D E Sbjct: 245 ----PVVRRDNLLSKPYADWGAKDKLDIILSNPPFGG---VEEDGTETNFPKKF------ 291 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + + + LFL + L+ GR AIVL LF + ++ LL+ Sbjct: 292 ---RTKETADLFLALIIKLLKDK----GRCAIVLPDGTLFGEGMK---TRLKEELLDKCN 341 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 + IV LP +F T+I T L + + K + IN Sbjct: 342 LHTIVRLPNGVFNPYTSIKTNLLFFEKGTPTKDVWYY-----EHQYPKGAKSYNKTKPIN 396 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRT 472 + + R +++ + Sbjct: 397 IKEFDVEKKWWNKRVENEYAWKVSIED 423 >gi|254467344|ref|ZP_05080755.1| subunit M of type I restriction-modification system [Rhodobacterales bacterium Y4I] gi|206688252|gb|EDZ48734.1| subunit M of type I restriction-modification system [Rhodobacterales bacterium Y4I] Length = 481 Score = 158 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 142/398 (35%), Gaps = 68/398 (17%) Query: 38 FTLLRRLEC---ALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ ++ LE TR ++L + D E F NT + +L Sbjct: 33 MFFLKIIDDQDEELEFTRDDYTSPIPEHLQWRAWAADPEGITGDELQDFVNTQLFPTLKE 92 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L T +R + +++FE ++ L+ ++ S ++ Sbjct: 93 LPPTTSRARV----------VRSVFE-----DAYNYMKSGQLMRQVINKISEVDF-NSLS 136 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + ++YE L+ + + A ++ TPR V L P L Sbjct: 137 ERQHFGDVYEQLLNDL--QNAGNAGEYYTPRAVTAFMVQQL----------DPQPGEILM 184 Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP CGTGGFLT AM H+ D + E +P H +C ML+ +E Sbjct: 185 DPACGTGGFLTCAMRHMRDRYVKRPEDEAKMQASLRAVEKKPLPHMLCTTNMLLHNIE-- 242 Query: 268 PRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 ++ +TL++ +R LSNPPFG K E + + K E Sbjct: 243 ----EPSWVKHDNTLARPLISWTKDERVDIILSNPPFGGKEEDGIENNFPQFKTRE---- 294 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 +D LFL + L+ GRAA+VL LF ++ ++ LL Sbjct: 295 ------TAD---LFLALIIRLLKK----NGRAAVVLPDGSLF---GEGIKTRLKEHLLTE 338 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421 + IV LP +F +I T L + Sbjct: 339 CNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPTQEVWY 376 >gi|254478539|ref|ZP_05091914.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM 12653] gi|214035547|gb|EEB76246.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM 12653] Length = 476 Score = 158 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 89/430 (20%), Positives = 154/430 (35%), Gaps = 58/430 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 LR L+ E A + ID E + + T ++ L + Sbjct: 20 LLFLRFLDAQ-EEEWEAQAQIAGRPYTPIIDSEY-----RWRHWATKDWPADELLA-FVH 72 Query: 98 NNLESYIASFSDN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 L Y+ S + + + L + + + I H +S Sbjct: 73 GRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFH-SQDDIFTVS 131 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +YE L+RR G + A +F TPR VV L+ P + +YDP CGT Sbjct: 132 QVYEELLRRLG-NENRLAGEFYTPRPVVRFVVELV----------DPQIGEAVYDPACGT 180 Query: 217 GGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 GFL +A + H+I GQE +P + + M++ + Sbjct: 181 CGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMVLHGV-------TV 233 Query: 274 KNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + +TL ++ +RF ++NPPFG + P S Sbjct: 234 PRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNF---------------PIQS 278 Query: 333 DG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + +LFL H+ KL+ G R +V+ LF G A +E++R LLE + +V Sbjct: 279 NATELLFLQHIMKKLKP--RDGARCGMVVPEGTLFRGGA---FAEVKRDLLEQFNLHTVV 333 Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 +LP F +++ T L + +L L ++ K + I D+ Sbjct: 334 SLPPGTFAPYSDVKTALIFFERPGPTKEIWYYEL----PLPEGLKKF-SKGKPIQDEHFE 388 Query: 451 QILDIYVSRE 460 + ++ + Sbjct: 389 EARKLWRGWD 398 >gi|292656397|ref|YP_003536294.1| type I restriction-modification system methylation subunit [Haloferax volcanii DS2] gi|291370225|gb|ADE02452.1| type I restriction-modification system methylation subunit [Haloferax volcanii DS2] Length = 464 Score = 158 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 88/544 (16%), Positives = 161/544 (29%), Gaps = 99/544 (18%) Query: 1 MTEFTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M+ G + IW L + + + L+ ++ + Sbjct: 1 MSRNNGKL-DVEQKIWDICGILREDGMHIGTYVEQVTVLLFLKMMD------------ER 47 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112 FG +I+ + S L + LE Y + Sbjct: 48 EQFGSESIE-------------IPEDCQWSVLKEKDGEELLEHYNRVVLPTLGDQDGIVG 94 Query: 113 AIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 IF + F + + L + + +E + V YE L++R+ E Sbjct: 95 DIFARVNSQFRTPVN-------LREAIREIDEVEW--SAIEVDVKGTAYEALLQRYAEEA 145 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +GA + TPR + + D + GTGGFL A H+ + Sbjct: 146 -KGAGQYFTPRPAIKAIVKAVDPDHDDDIHDP----------AAGTGGFLIHAFEHILEK 194 Query: 231 --------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + G EL PET + + + + L +N + G +L Sbjct: 195 TNEGLDLSRDERRELMTENLSGMELVPETRRLGLMNLALHDL-------QPQNFEVGDSL 247 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 S T + + L+NPP+G +K + + F+ H Sbjct: 248 SLGPHTDESYDVILTNPPYGGNQKK--KRARDDFMVDTRS-----------PELNFVQHN 294 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401 + L+ GG +V+ LF A IR L E+ + ++ LP F T Sbjct: 295 MSLLKQ----GGECGMVVPDGTLFQSGAAQ---RIRENLFEDFNVHTVLVLPIGAFQPYT 347 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 N+AT + + KV + I+ + ++ L+ + SRE Sbjct: 348 NVATNVIFFEKG---DSTEKVWFYDLRTEMEKIKKS----NPLTEEHFEDFLENFDSREE 400 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 + + + F E + L + I+ Sbjct: 401 SEHYFSVSIEEIEENEHTLSYKQYKEFDDGDEVAPPEELLTELQSLQDTVRENTEAIMDE 460 Query: 522 MMQQ 525 + + Sbjct: 461 LEDE 464 >gi|167767091|ref|ZP_02439144.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1] gi|167711066|gb|EDS21645.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1] gi|291559574|emb|CBL38374.1| Type I restriction-modification system methyltransferase subunit [butyrate-producing bacterium SSC/2] Length = 547 Score = 158 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 86/490 (17%), Positives = 194/490 (39%), Gaps = 68/490 (13%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFS 108 T R+ ++++ ++ + E F ++ + ++ S +L ST + + + + S Sbjct: 88 ETAQLKRKHFISYLFNHKNDEKFNELFDSTLWDISNINLDVFSVSTGSGDKIRLFDEHLS 147 Query: 109 DNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 N DF + I +L FS E+ I+E+LI+ + Sbjct: 148 QNVTESNRRSDFCKAMIDKLVT----------FSFSEVFSQKYDFFA--TIFEYLIKDYN 195 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + ++ TP + + +++ T+YDP GTG + + + Sbjct: 196 KDFGK-YAEYYTPHSIASIIARIMVP--------KGTQNVTVYDPAAGTGTLVLALAHEI 246 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + + Q++ +++ L L + ++ G TL Sbjct: 247 GENN--------CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGHVVHGDTLLSPQH 293 Query: 288 TG------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS------ 335 +F Y +SNPPF + ++D + ++ RF G+P + + Sbjct: 294 LNHQKNGLMKFDYIVSNPPFNVDFSDNRDTLAGDN---YKERFWAGVPNVPNKKKDSMAI 350 Query: 336 -MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +FL H+ ++ GRAAIV+ + L A IR ++++ ++ +V++P Sbjct: 351 YQMFLQHIIFSMKENS---GRAAIVVPTGFL--TAATGIPKRIREYIVKERMLRGVVSMP 405 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQIL 453 +++F T + L N K K L++A+ L T ++ +GK +R I++ ++ I+ Sbjct: 406 SNIFATTGTNVSVIFLDNSKKY---DKAILMDASKLGTKVKVDGKNQRTILSFEEIENII 462 Query: 454 DIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLH 511 + + + EN + FS ++D Y +I+ + + + + +E ++ + Sbjct: 463 NTFNNLENKEDFSVVVD-----YDKIEQKKYSFSAGQYFEVKIKYIELTQEEFKTKMTEY 517 Query: 512 QSFWLDILKP 521 ++ Sbjct: 518 TEKLTELFAE 527 >gi|114566063|ref|YP_753217.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336998|gb|ABI67846.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 489 Score = 158 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 75/496 (15%), Positives = 156/496 (31%), Gaps = 79/496 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNT 96 +R L+ + E A G + AG +S T S Sbjct: 35 LMFIRSLD-----EKELEMESVEALSGEEMPKIFPQDKAGQDM----RWSKFKTKDSRAI 85 Query: 97 RNNLESYIASFSDNAKA----IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + + S + F F + + + +L KI + D Sbjct: 86 YDIVGSKVFPFIKAMNGKNTSAFSRY-MQDAMFLIPTPQVLQKIITGLDEL-YEHDIKDL 143 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE+++ + + F TP+ + + LL P + DP Sbjct: 144 DMQGDVYEYMLGKLSTAG--QNGQFRTPKQIRDMMVRLL----------DPAPDNKVCDP 191 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG------QELEPETHAVCVAGMLIRRLES 266 CGT GFL ++ + P G + + + +++ + Sbjct: 192 ACGTAGFLVSIAEYIREKYETEMTPEQWEHFGGAMFTGFDTDRTMLRISAMNLMLHSI-- 249 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I+ ++SK + L+NPPF D +++ K Sbjct: 250 -----TQPRIEYVDSVSKQNSISSAYDIILANPPFTGTI--DTESINDNLK--------- 293 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + +LF+ L GGR + ++ LF +R+ L+EN Sbjct: 294 AVCSSKKTELLFVALFLRMLRK----GGRCSCIVPDGVLF--GTTRAHKALRKELVENHQ 347 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 ++ ++++P+ +F ++T + + + KV + + KR I Sbjct: 348 LQTVISMPSGVFKPYAGVSTAILVFTKT-GAGGTDKVWFYDMRADGY---SLDDKRTPIE 403 Query: 446 DDQRRQILDIYV------SRENGKFSRMLDYRTF----------GYRRIKVLRPLRMSFI 489 D+ I+ + R+ + S ++ Y+ I + + + Sbjct: 404 DNDIPDIIARFHNPEGEADRKPTEQSFFVEKSAIVANDYDLSINRYKEIVYEKVVYDAPA 463 Query: 490 LDKTGLARLEADITWR 505 + L +L DI + Sbjct: 464 VIMDRLDKLNLDIAAK 479 >gi|269966770|ref|ZP_06180845.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269828630|gb|EEZ82889.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 452 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 75/439 (17%), Positives = 160/439 (36%), Gaps = 70/439 (15%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A LL ++ + S I+++ ++YE+L+ + F TPR+++ + Sbjct: 36 AKLLDQVVQLLSAIDMN----DKDTKGDLYEYLLSKLQQSG--VNGQFRTPRNIIQMMVE 89 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVP 242 L+ P + T+ DP+ GT GFL A+ +V + + K + Sbjct: 90 LM----------QPKVGDTICDPSSGTCGFLMAAVEYVEEHHAKEVNKPDNRKHFNNEMF 139 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPP 300 G + + + ML+ +E + ++ +L D + ++ L+NPP Sbjct: 140 TGFDFDKHMLRIGAMNMLLHGIE-------NPSVHYRDSLQDQGDENISEAYNLILANPP 192 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLP---------------------KISDGSMLFL 339 F + D A + G+ P +LFL Sbjct: 193 FKGSVDFDIVAPDLLRALGKNPVVKKTAPKFKTEIDEDGNEVQVEVKKKKPTEKSELLFL 252 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + L++ GGRAA+++ LF + IR+ ++++ +EA+++LP+ +F Sbjct: 253 ALILRMLKV----GGRAAVIIPDGVLF--GSTKAHKTIRQKIVQDQKLEAVISLPSGVFK 306 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRNEGKKRRIINDDQRRQILDI 455 ++T + I + + V + R + K ++ I DI Sbjct: 307 PYAGVSTAILIFTKTNSG-GTDNVWFYDMQADGYSLDDKRTQLFKDGETATHEQSNIADI 365 Query: 456 YVSRENGKFSRMLDYRTF-GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-LHQS 513 + Y+R K + SF++ + + D++ + +++ Sbjct: 366 IARFKTLTNEDSTPNSDSPEYKRNKTEQ----SFMVPVADITNNDFDLSINRYKEVVYEE 421 Query: 514 FWLDILKPMMQQIYPYGWA 532 D K ++++I Sbjct: 422 VQYDAPKEILKRIKDLQNK 440 >gi|257467221|ref|ZP_05631532.1| type I restriction-modification system M protein [Fusobacterium gonidiaformans ATCC 25563] Length = 283 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 27/226 (11%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300 GQE+ + M + + + + +I++G TL L ++ F +SNPP Sbjct: 14 FFGQEINMTNFNLARMNMSLHNINYN-----NFSIKRGDTLLNPLHNEEKPFDAIVSNPP 68 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 + KW D D RF P L S F+MH + L GRAAI Sbjct: 69 YSIKWVGDADPT-----LINDERFAPAGKLAPKSYADYAFIMHSLSYLSSK----GRAAI 119 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V + A E IR++L++N+ ++ ++ LP +LFF T+IAT + +++ KTE Sbjct: 120 VCFPGIFYRKGA---ERTIRKYLVDNNFVDCVIQLPDNLFFGTSIATCILVMAKNKTE-- 174 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 +V I+A+ + N I+ + I++ + +RE ++ Sbjct: 175 -NRVLFIDASKEFKKETN----NNILEEKNINTIVEEFRNREEKEY 215 >gi|282932148|ref|ZP_06337601.1| putatIve type i restriction enzyme hindviip m protein [Lactobacillus jensenii 208-1] gi|281303727|gb|EFA95876.1| putatIve type i restriction enzyme hindviip m protein [Lactobacillus jensenii 208-1] Length = 203 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 32/234 (13%) Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159 I +++ + I + L+++ L + S I + + ++ +Y Sbjct: 1 MESIEKDNESLRGILSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVY 56 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+ +++F S + +F TPR VV ++ T+YDP CG+GG Sbjct: 57 EYFLQKFASNEKKNGGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGM 105 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + V + L +GQE P T + + IR ++++ + Sbjct: 106 FVQSEQFVQEHQGQI---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------ 156 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 T + DL G F Y L+NPPF K + K + R+ G+P + Sbjct: 157 DTFTNDLHKGTHFDYILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGN 203 >gi|330971618|gb|EGH71684.1| type I restriction-modification system, M subunit, putative [Pseudomonas syringae pv. aceris str. M302273PT] Length = 136 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 + + A F+W A+ L GDFK + +G++ILPFTLLRR+EC L PT+ V ++ Sbjct: 4 ENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLTPTKDEVIKQTFAQEGR 63 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + ++ AG F+N S +L TL T T +L SY+ SFS +A+ IFE F F Sbjct: 64 PDTVREMILLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFEDF 123 Query: 124 IARLEKAGLLYKI 136 + +L A LLY++ Sbjct: 124 VQQLATANLLYQV 136 >gi|293570791|ref|ZP_06681840.1| type I restriction-modification system, M subunit [Enterococcus faecium E980] gi|291609144|gb|EFF38417.1| type I restriction-modification system, M subunit [Enterococcus faecium E980] Length = 489 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 89/496 (17%), Positives = 165/496 (33%), Gaps = 86/496 (17%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + A E T + + Y + + + L + Sbjct: 34 LFLK-IYDAKEETWELLNDNYTSIIPEGLKWRD---------WAVDRKDGEALTGDALLD 83 Query: 99 NLESYIASFSDNAK--------AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + + + N + + + F + LL ++ I+ + Sbjct: 84 FVNNTLFPTLKNLEIDETTPMSQVIVRYAFEDANNYQKDGVLLRQVVNIIDEIDFT-EYK 142 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 IYE ++ S + A +F TPR V + P + + Sbjct: 143 ERHEFGAIYESFLKDLQSAGN--AGEFYTPRAVTDFMVKAV----------KPVLGDKIG 190 Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 D CGTGGFLT A+N + + ++ +G E + H +CV MLI ++ Sbjct: 191 DFACGTGGFLTSALNELDKQVGNSLENREIYNKSVYGIEKKSLPHMLCVTNMLIHDID-- 248 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 NI G+ L D ++ F L NPP+G + Sbjct: 249 -----DPNILHGNALETDYKELRKMEPFDVVLMNPPYGGSEKDSVKVNFPTEL------- 296 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + S+ + LF+ + +L+ GRAA++L LF +G+ I++ L Sbjct: 297 -----RSSETADLFMNVIMYRLKK----NGRAAVILPDGFLF--GTDNGKFNIKKKLFSE 345 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 + +V +P +F T I T + N + + D+ +N K R Sbjct: 346 FNLHTVVRMPHSVFAPYTPIRTNILFFDNTEPTKETW----FYRVDMPEGYKNF-SKTRP 400 Query: 444 INDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLRPLRM 486 + + L+ + +RE + S +D F + +L P+ + Sbjct: 401 MKLEHFNDALNWWENREEIEVDGFPKAKRYMIDEIIERSYNIDLCGFPHEEEVILEPMDL 460 Query: 487 SFILDKTGLARLEADI 502 + A L A+I Sbjct: 461 IQEY-QEKRASLNAEI 475 >gi|332877499|ref|ZP_08445246.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684605|gb|EGJ57455.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 498 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 76/525 (14%), Positives = 175/525 (33%), Gaps = 77/525 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK---VAGYSFYNTSEYS-LST 90 I ++ L+ + + A+ + + YN + Sbjct: 32 ITYLLFMKMLDDK-QLEKEAIANLIGDLLLNPTFPDGMWHNPTTDQDVPYNEMRWHVFKE 90 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPD 148 + T N + + + F + T+ ++ A L ++ + I Sbjct: 91 MEPTKMLNRVRNDVFIFLRYVGKEGSAYSKAMEDTVFQITDARFLSRVIEGIDEI----S 146 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + +M ++YE+++ + F TPR ++ + L+ D T Sbjct: 147 SDGADMMGDVYEYMLGIMAASG--TNGQFRTPRHIIRMMVELMRPTLDD----------T 194 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261 + DP G+ GF+ +A ++ + S + + HG + + + M++ Sbjct: 195 ICDPAMGSAGFIMEAAKYITEHQSDELLNIEEKERFRKEIFHGSDSDASMLRIGCMNMML 254 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 ++ N+ ++LS + R+ CL+NPPF + D A + Sbjct: 255 HDVD-------EPNLYYRNSLSDENDDTNRYTLCLANPPFAGSLDTDDIAHTLKAAV--- 304 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 K +LFL + L GGR A ++ + L G + IR L Sbjct: 305 --------KTKKTELLFLALMMRML----QSGGRCASIVPDTVL-TGDSK-AYKTIRSAL 350 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 ++N ++A++ +P+ +F + ++T + I + KV + S+ + Sbjct: 351 VDNHCMQAVITMPSGVFQPYSGVSTAIIIFTKT-GAGGTDKVWFYDMRADGFSLTTQRTP 409 Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 + ND ++ + + E SR SF + + Sbjct: 410 QPEQND--IPDVISRFHNLEAETDRSRK-----------------EQSFFVTADEIRANG 450 Query: 500 ADITWRKLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSN 543 D+++++ + + + + ++ ++ K Sbjct: 451 YDLSYKRYHEVEREAVEYEAPETIIARMEKRQKTIDAAFAEFKKL 495 >gi|207092295|ref|ZP_03240082.1| type I restriction enzyme M protein [Helicobacter pylori HPKX_438_AG0C1] Length = 543 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 89/549 (16%), Positives = 185/549 (33%), Gaps = 92/549 (16%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83 ++ +I L + L E + + D + F K F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNKEEKEDFFITLTD 85 Query: 84 -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127 + LS L + +N L++ S N +F T L Sbjct: 86 KRLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESI 145 Query: 128 -----EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173 E++ L K F+ + + + I+E+L++ + S+ Sbjct: 146 SQYINEESKRANFTRSLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGK 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL++ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ + KN +G+TL+ + Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKDYKG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 + Y +SNPPF + + + + + F G+P +D S LF H Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AI++ + F E++I R L++ L+ ++ +P+ +F T Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVICMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462 + +E +V LI+A+ L K+ + IL+ + ++ Sbjct: 414 NVSIIFFQKTPSE---DEVVLIDASKLGEEYTENKNKKTRLRTSDIGLILETFQNKTPKA 470 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFW 515 F ++ + + + +++ E + L QS Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530 Query: 516 LDILKPMMQ 524 +IL+ + Sbjct: 531 QEILETLKG 539 >gi|197104449|ref|YP_002129826.1| type I restriction-modification system, M subunit [Phenylobacterium zucineum HLK1] gi|196477869|gb|ACG77397.1| type I restriction-modification system, M subunit [Phenylobacterium zucineum HLK1] Length = 485 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 101/499 (20%), Positives = 171/499 (34%), Gaps = 95/499 (19%) Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIAS----FSDNA------ 111 + D E + GY E+ + T + L S+I + N Sbjct: 40 DDQDQELELVQPGYESPVPDEFQWRNWAADREGMTGDALLSFINNELFPALKNLPITGPR 99 Query: 112 --KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 +AI F ++ L K+ ++ D + +IYE L+ S Sbjct: 100 RHRAIVVRSVFEDAYNYMKSGHQLRKVVNKIDDVDF-NDLSERQHFGDIYEQLLNDLQSA 158 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A ++ TPR V T + P L+DP CGTGGFLT AM H+ + Sbjct: 159 GN--AGEYYTPRAVTAFMTDRI----------DPKPGEILFDPACGTGGFLTCAMRHMRE 206 Query: 230 CG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285 + E +P H + V ML+ +E ++ +TL++ Sbjct: 207 RYVKRPEDEALMQASLRAVEKKPLPHMLAVTNMLLHGVEDPSF------LRHDNTLARPY 260 Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 R L+NPPFG +++D +E R + +D LFL + Sbjct: 261 ISWGQSDRVDIVLTNPPFGG---QEEDGIETNFPAHFRTR------ETAD---LFLALIV 308 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TN 402 L+ GGRAA+VL LF + ++ L+E + IV LP +F + Sbjct: 309 RLLKP----GGRAAVVLPDGTLFGEGMK---TRLKEHLMEECNLHTIVRLPNSVFKPYAS 361 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND----DQRRQILDIYV- 457 I T L + E T W EG+K + + + + Sbjct: 362 IGTNLLFFEKGQPTEE---------TWYWEHRVPEGQKAYSMTKPIRLEHFADCVAWWGG 412 Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRK 506 +R+ G + R+ ++ LD +E D + + Sbjct: 413 TAREARQEGPQA----------WRVTAEAVKARNYNLDIKNPHTVEEDHGDPAELLAELR 462 Query: 507 LSPLHQSFWLDILKPMMQQ 525 + + D LK ++ + Sbjct: 463 AAEAKAAGLRDQLKSILAE 481 >gi|309810115|ref|ZP_07703961.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D] gi|308169614|gb|EFO71661.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D] Length = 462 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 63/412 (15%), Positives = 144/412 (34%), Gaps = 43/412 (10%) Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + + + I+E+LI+ + + ++ TP + + LL+ Sbjct: 79 RALVDKLVNFSFEAAFNENYDFFAAIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLV 138 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 + L +YDP+ GTG L + + Q++ ++ Sbjct: 139 GDNTDLHDIE------VYDPSAGTGTLLIALSHQI--------GQDRCTIFAQDISQRSN 184 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWE 306 + +++ L + QG TL S D ++F Y +SNPPF + Sbjct: 185 KMLKLNLILNGL-----VSSLDHAVQGDTLTHPYHKSNDGKELRQFDYVVSNPPFKMDFS 239 Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 +E RF G+PK M + G+ AIV+ + Sbjct: 240 D-----NREELASMPVRFWGGVPKIPAKKKEKMAIYTLFIQHVINSIKSNGKGAIVVPTG 294 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 L E+++ ++++ +I +++P+++F T + + KV Sbjct: 295 FL--TVKKGVENKVLHYMVDKKIIRGAISMPSNVFANTGTNVSVLFFDK---SQEHDKVV 349 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLR 482 LI+A+ + ++ ++ + ++ QI+ + + FS ++ Y ++ + Sbjct: 350 LIDASKMGEEYKDGNNQKCRLRPNEIDQIVHAFRDNKAIDNFSVVVSYDEIKEKKYSLAA 409 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMMQQIYPYGW 531 ++ L E + Q + + + +M+Q+ + Sbjct: 410 GQYFDVKIEYVDLTPEEFQEKMQNYQNTLQELFNEGDKLKNDIMEQLKKVKY 461 >gi|298248251|ref|ZP_06972056.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963] gi|297550910|gb|EFH84776.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 89/477 (18%), Positives = 164/477 (34%), Gaps = 93/477 (19%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 EK G+L + I + + + +M +I+E+L+ E S F TPR ++ Sbjct: 167 EKGGMLERALIQVDNIFKYIGSANEDIMGDIFEYLLSEI--EASGKNGQFRTPRHIIRFM 224 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------- 240 LL P + DP G+GGFL +++ HV S + Sbjct: 225 IELL----------DPQFNELICDPAAGSGGFLINSIQHVLKKYSEDTVIYEWNGTPHRI 274 Query: 241 ------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G + + + M++ +E + + LS+ + Sbjct: 275 YGVPPKPYPTPESCTGYDNDRTMVRIGWMNMILHGIE-------NPRMILRDALSQRMED 327 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 R+ L+NPPF + D V + R P + SD +LFL L+ Sbjct: 328 QDRYDVVLANPPFAGQV--DVGDVHPDLPRHPNNRHRP-ITDKSD--LLFLWQTLRILK- 381 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GGRAA++L LF + + E+RR LL ++++ +++LP +F T + T + Sbjct: 382 ---NGGRAAVILPEGVLF--GSTNAHKELRRQLLLENIVDGVISLPAGVFSPYTGVKTSI 436 Query: 408 WILSNRKTEERRGK------VQLINAT-----------------DLWTSIRNEGKK---- 440 I K E R G+ V + + DLW ++ ++ Sbjct: 437 LIFHKHKGEYRAGQEPVTKSVWFYDVSIEGYSRDAKRRERPEENDLWDAMEKWSRQIIED 496 Query: 441 -----------RRIINDDQRRQILDIYVSRENGK--FSRMLDYRTFGYRRIKVLRPLRMS 487 R + D++ +I Y + S L + + P + Sbjct: 497 TKYSKPEIETVRWRLVDEEMLKIFPEYRESLEPELDKSWGLHELFKEFADLPSHHPESLK 556 Query: 488 FIL---DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + + + +L + L K + + I + V ++ K Sbjct: 557 AYVQERTRPRIEQLYTQALAICEASLRVQERSSSEKVITENITRAVRDLNRVFDAAK 613 >gi|307748413|gb|ADN91683.1| HsdM [Campylobacter jejuni subsp. jejuni M1] Length = 496 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 92/514 (17%), Positives = 181/514 (35%), Gaps = 77/514 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ +++ L+NPPFG K ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 P S+ +LFL H+ L+ GR AI++ LF + Sbjct: 309 -------------PIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLFQN--SNAF 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT---EERRGKVQLINATDL 430 +++ LL++ +E +++LP+ +F + + T + S + KV Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGLNSILKANDDKVYYYELIPP 409 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490 + K + + + L Y R+ S ++ + R + + Sbjct: 410 YKLT-----KNKPLEYAHFNEFLKYYKERKITANSWLVSKKELEERNY--DLSAKNPNVK 462 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ L E + + + Q +L+ LK +++ Sbjct: 463 EEKILRTSEEILNSLEENLKTQQEYLNELKSILK 496 >gi|330907935|gb|EGH36454.1| type 1 restriction-modification system, DNA-methyltransferase subunit M [Escherichia coli AA86] Length = 544 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQHDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 ATAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|139438844|ref|ZP_01772304.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC 25986] gi|133775555|gb|EBA39375.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC 25986] Length = 492 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 93/501 (18%), Positives = 168/501 (33%), Gaps = 66/501 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + A E + Y + + S+ A + L + + Sbjct: 33 LFFLK-IYDAKEQEWEFHDDSYQSIIPERLRWYSWAHDAK-DGKALTGDELLDFVNNDLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 LES + + + F+ ++ LL ++ + Sbjct: 91 KTLESLELAPDAPLRHVVVKAAFTDANNYMKDGILLRQVINEIDESVDFTEYKERHAFGE 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + A +F TPR V L +P + T+ D CGTG Sbjct: 151 IYETILKDLQSAGN--AGEFYTPRAVTDFMAQAL----------APKLGETVADFACGTG 198 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A+ + + +G E + + +CV ML+ ++ + Sbjct: 199 GFLTSALKILDSQVQTPADRELYARSVYGIEKKQLPYLLCVTNMLLHDID-------NPE 251 Query: 276 IQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + ++L KD +F L NPP+G F L + Sbjct: 252 VFHDNSLEKDVREWKHKPDGQFDVVLMNPPYGGSESASVQ-----------NNFPVAL-R 299 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S+ + LFL + +L+ GGRAA+++ LF S ++EI+R LLE+ + + Sbjct: 300 SSETADLFLGLILYRLK----RGGRAAVIIPDGFLF--GQDSAKTEIKRRLLEDMNLHTV 353 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIIN 445 + LP +F T+I T + N E + EG K + I Sbjct: 354 LRLPQSVFAPYTSITTNVLFFDNTGASE---------GVWFYRMDMPEGYKHFSKTKPIR 404 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI---LDKTGLARLEADI 502 + + + + +R + + Y + LR +F L D Sbjct: 405 IEHFAPVKEWWENRRDIE---EDGNPKAKYYTVDELRDGGFNFDVCGYPHEEEEILPPDE 461 Query: 503 TWRKLSPLHQSFWLDILKPMM 523 R +I + + Sbjct: 462 LIRNYKEERAKLDAEIDQKLA 482 >gi|325911636|ref|ZP_08174044.1| putative type I restriction-modification system, M subunit [Lactobacillus iners UPII 143-D] gi|325476622|gb|EGC79780.1| putative type I restriction-modification system, M subunit [Lactobacillus iners UPII 143-D] Length = 542 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 78/545 (14%), Positives = 175/545 (32%), Gaps = 71/545 (13%) Query: 27 KHTDFGKVILPFTLLRRLECAL--EPTR--------SAVREKYLAFGGSNI----DLESF 72 ++ +I L + L E + + Y + I D S Sbjct: 28 DGNEYK-IITQVFLYKFLNDKFGYEIKKINPVIAQAEKWEKAYASLSEDEITDLLDELSP 86 Query: 73 VKVAGYSFYNTSEY-------SLSTLGSTNTRNNLESYIASFSDNAKA-----IFEDFDF 120 + Y S + + ++ + FS +FE Sbjct: 87 DIPSLRPEYLISNLWNQQTKGDFDLIFDSTMKSIANDNLEIFSTQTTEKTKIPLFEKLT- 145 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 ++A + + + I+E+LI+ + + ++ T Sbjct: 146 PYVTDDAQRAPFARALVDKLVNFSFEAAFNENYDFFAAIFEYLIKDYNTAGGGKYAEYYT 205 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P + + LL+ + L +YDP+ GTG L + + Sbjct: 206 PHAIATIMARLLVGDNTDLHDIE------VYDPSAGTGTLLIALSHQI--------GQDR 251 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFH 293 Q++ ++ + +++ L + QG TL S D ++F Sbjct: 252 CTIFAQDISQRSNKMLKLNLILNGL-----VSSLDHAVQGDTLTHPYHKSNDGKELRQFD 306 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPP 350 Y +SNPPF + +E RF G+PK M + Sbjct: 307 YVVSNPPFKMDFSD-----NREELASMPVRFWGGVPKIPAKKKEKMAIYTLFIQHVINSI 361 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ AIV+ + L E+++ ++++ +I +++P+++F T + Sbjct: 362 KSNGKGAIVVPTGFL--TVKKGVENKVLHYMVDKKIIRGAISMPSNVFANTGTNVSVLFF 419 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469 + KV LI+A+ + ++ ++ + ++ QI+ + + FS ++ Sbjct: 420 DK---SQEHDKVVLIDASKMGEEYKDGNNQKCRLRPNEIDQIVHAFRDNKAIDNFSVVVS 476 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMMQQI 526 Y ++ + ++ L E + Q + + + +M+Q+ Sbjct: 477 YDEIKEKKYSLAAGQYFDVKIEYVDLTPEEFQEKMQNYQNTLQELFNEGDKLKNDIMEQL 536 Query: 527 YPYGW 531 + Sbjct: 537 KKVKY 541 >gi|26554276|ref|NP_758210.1| type I restriction-modification system M subunit [Mycoplasma penetrans HF-2] gi|26454285|dbj|BAC44614.1| type I restriction-modification system M subunit [Mycoplasma penetrans HF-2] Length = 490 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 82/477 (17%), Positives = 170/477 (35%), Gaps = 68/477 (14%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ + L ++ ++L + ID S + G L L Sbjct: 33 MFFLKVYDSKEQEWKILSKDYQSIIPEHLQWRNWAIDNRSNNVLTG--------DDLLKL 84 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + + L++ S + + F ++ L ++ + I+ Sbjct: 85 VNNDLFPTLKNLQISTETPLRQKIVKYVFEDAANYMKDGIFLRQVINVINEIDFT-KYKE 143 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 IYE +++ + + A +F TPR + ++ P + + D Sbjct: 144 RHEFGEIYETILK--SLQSAGNAGEFYTPRALTDFIVKMI----------DPKLGERVAD 191 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 CGTGGFLT A+NH+ + +G E +P + +C+ +L+ ++ Sbjct: 192 FACGTGGFLTSALNHLEKNSKTTEDNVMYNNSIYGIEKKPLPYLLCITNVLLHDVD---- 247 Query: 270 RDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 I ++L K D +F L NPP+G ++ P Sbjct: 248 ---EPKIFHTNSLEKNVRDYKESDKFEIILMNPPYGGSEKEAIKN------------NFP 292 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + S+ + LF++ + +L+ GR A ++ LF + + I+ LL Sbjct: 293 STLRSSETADLFIILMMYRLKK----NGRCAAIIPDGFLF--DTSNAKVAIKEKLLNEFN 346 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 + ++ LP +F T I T + N K E ++ D+ +N K + I Sbjct: 347 LHTVIRLPHSVFSPYTTINTNILFFENTKPTEETWFYRM----DMPEGYKNF-SKTKPIK 401 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + +++ + +RE + F ++ + ++ L+ ++E +I Sbjct: 402 IEHFNPVIEWWNNREEIEV-----DGNFKAKKYTKEELKKRNYDLNLCSFPQIEEEI 453 >gi|108562863|ref|YP_627179.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] gi|107836636|gb|ABF84505.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] Length = 543 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 84/552 (15%), Positives = 189/552 (34%), Gaps = 85/552 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83 ++ +I L + L E + + D + F K F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNKEEKEDFFITLTD 85 Query: 84 -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA- 130 + LS L + +N L++ S N +F T L ++ Sbjct: 86 KRLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESV 145 Query: 131 --------------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173 +L K F+ + + + I+E+L++ + + + Sbjct: 146 SQYINEESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGK 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL++ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ + KN +G+TL+ + + Sbjct: 252 --GTNSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKECHG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 + + +SNPPF + + + + + F G+P +D S LF H Sbjct: 305 KMDFIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AI++ + F E++I R L++ L+ +V +P+ +F T Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVVCMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462 + + + +V LI+A+ L K+ + IL+ + ++ + Sbjct: 414 NVSIIFFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRTSDIGLILETFQNKTQKA 470 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F ++ + + + + +++ E + ++ S S + + Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530 Query: 523 MQQIYPYGWAES 534 + + G Sbjct: 531 QEILETLGNLNY 542 >gi|75675446|ref|YP_317867.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255] gi|74420316|gb|ABA04515.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255] Length = 484 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 95/510 (18%), Positives = 167/510 (32%), Gaps = 84/510 (16%) Query: 38 FTLLRRLEC---ALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ ++ LE T+ K L + D E A F N L Sbjct: 33 LFFLKIIDDQDQELELTKDGYHSPIPKKLQWRTWAADPEGITGQALLDFVNDE------L 86 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + + +FE ++ LL ++ + ++ + Sbjct: 87 FPALKGLQVSDRPGDRRRVVRDVFE-----DAYNYMKSGQLLRQVVNKITQVDF-NNLDE 140 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 R YE L+ S + A ++ TPR V ++ P L+D Sbjct: 141 RRHFGEFYEQLLNDLQSAGN--AGEYYTPRAVTAFMVQMI----------DPHPGEILFD 188 Query: 212 PTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 P CGTGGFL+ A+NH+ + E + H +CV ML+ +E Sbjct: 189 PACGTGGFLSCAINHMEANYVRTPKQREKMQGGLRAVEKKQLPHMLCVTNMLLHGIEDPS 248 Query: 269 RRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 ++ +TL++ +R ++NPPFG K ++G F Sbjct: 249 F------VKHDNTLARPLISWSKDERVDIVVTNPPFGGKE-----------EDGIENNFP 291 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + + + LFL + L+ GRAA+VL LF + ++ L+E Sbjct: 292 --TFRTKETADLFLALIVRLLKPD----GRAAVVLPDGTLFGEGVK---TRLKEHLMEEC 342 Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---- 440 + IV LP +F +I T L + + EG+K Sbjct: 343 NLHTIVRLPNSVFKPYASIGTNLLFFEKGAPTKDI---------WFYEHRVPEGQKAYSM 393 Query: 441 RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 R I + +D + R+ + + R + + D Sbjct: 394 TRPIRLEHFHGCIDWWGGKARKGRKETPQAWKVSAEEIKARGYNLDIKNPHAVADDHGDP 453 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 L AD+ + + + D LK ++ + Sbjct: 454 ETLLADLA---RAEAETATYRDQLKAILAE 480 >gi|254425432|ref|ZP_05039150.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335] gi|196192921|gb|EDX87885.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335] Length = 524 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 72/483 (14%), Positives = 165/483 (34%), Gaps = 68/483 (14%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 +F +I L + L + + + + Sbjct: 29 DGNEFK-IITQVFLYKFLNDKFAYEVKQIDADIDSTESWEQAINQLSEDDFELLQMQLSA 87 Query: 87 SLSTLGSTNTRNNLESYIAS------FSDNAKAI-FEDFDF-----------------SS 122 + L + ++L + + F D + I + D S Sbjct: 88 DTAKLKPEHFISHLFAQQNAPEFAKLFDDTLRDIAITNNDIFSVKTDRGGKVTLFDRVSE 147 Query: 123 TIARLEKAGLL-YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180 I L + I + I+E+LI+ + + ++ TP Sbjct: 148 FITDLSRRDEFCRAIINKLVAFSFERIFTEKYDFYATIFEYLIKDYNKDSGGKYAEYYTP 207 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V + A+L+ + YDP+ G+G L + + + + Sbjct: 208 HAVAKIMAAILVPEHQ----RGKIQNVSCYDPSAGSGTLLMNIAHAIGE--------ERC 255 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCL 296 Q++ ++ ++ L + +N+ QG+TL + + F Y + Sbjct: 256 SIFPQDISQKSSSLLR-----LNLILNNLVHSIQNVIQGNTLLQPYHKDGKKLKLFDYIV 310 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELP 349 SNPPF + +D ++ + RF G+P + ++ LFL H+ L+ Sbjct: 311 SNPPFKMDFSDFRDDLDSDKNKK---RFFAGIPNVPKKAVNKMAIYQLFLQHIIFSLKPE 367 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G+AA+V+ + L + +IR L++ ++ +V++P+++F T + Sbjct: 368 ----GKAAVVVPTGFL--TAQAGIDKKIRMKLIDEKMLAGVVSMPSNIFATTGTNVSIVF 421 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + + V LI+A+ L + + ++ ++ + + +I+ + +E ++ Sbjct: 422 IDK----ANKEDVVLIDASGLGETAKEGKNQKTVLTETEEEKIIATFNEKEVVDDFAVVT 477 Query: 470 YRT 472 Sbjct: 478 TYD 480 >gi|303250875|ref|ZP_07337068.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307246972|ref|ZP_07529036.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253061|ref|ZP_07534945.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255980|ref|ZP_07537776.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259760|ref|ZP_07541480.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262530|ref|ZP_07544172.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302650290|gb|EFL80453.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852114|gb|EFM84355.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306859472|gb|EFM91501.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861070|gb|EFM93068.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866150|gb|EFM98018.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306867765|gb|EFM99599.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 489 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 76/433 (17%), Positives = 159/433 (36%), Gaps = 53/433 (12%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + A E + + Y + + +++ K + L + Sbjct: 34 LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91 Query: 99 NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ I++ + + I F ++ LL ++ I + Sbjct: 92 ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE++++ + + A +F TPR V ++ P + + D CGTG Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A+ + +G E + H +C+ +L+ ++ + N Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250 Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + L KD +F L NPP+G + F L + S Sbjct: 251 VHHDNALEKPVKDYTENDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR AIVL LF + + I++ L+ + ++ Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKMAIKQKLMSEMNLHTVIR 352 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T+I T + N + + +L D+ +N K + + + + Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPQGYKNF-SKTKPMKLEHFNE 407 Query: 452 ILDIYVSRENGKF 464 +++ + +R+ + Sbjct: 408 VMEWWHNRQAIEI 420 >gi|83648373|ref|YP_436808.1| type I restriction-modification system methyltransferase subunit [Hahella chejuensis KCTC 2396] gi|83636416|gb|ABC32383.1| Type I restriction-modification system methyltransferase subunit [Hahella chejuensis KCTC 2396] Length = 250 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 90/254 (35%), Gaps = 29/254 (11%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 S +W A+ L G + +++ V+L L+ + E R + E+ Sbjct: 11 NKKQRSFEQTLWDTADKLRGSVESSEYKHVVLSLIFLKFISDKFEERRKELIEEGHGGYV 70 Query: 65 SNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLESYI---ASFSDNAKAIFED 117 +D FY E + +++ + + + + D Sbjct: 71 DMVD----FYTMKNVFYLPEESRWEFISKNAKQDDIAVKIDTALHTVEKNNKSLRGALPD 126 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 FS + K L + + + I+ D V+ +YE+ + +F + +G +F Sbjct: 127 NYFSRLGLDVSK---LAALIDSINNIDTVEDNET-DVVGRVYEYFLGKFAATEGKGGGEF 182 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP+ VV L ++ +YDP CG+GG ++ V + + K Sbjct: 183 YTPKCVVKLIAEMI-----------EPYHGKIYDPCCGSGGMFVQSVKFVENHRGNKK-- 229 Query: 238 PILVPHGQELEPET 251 + +GQE T Sbjct: 230 -DISIYGQEQTSTT 242 >gi|154488697|ref|ZP_02029546.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis L2-32] gi|154082834|gb|EDN81879.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis L2-32] Length = 492 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 81/492 (16%), Positives = 167/492 (33%), Gaps = 85/492 (17%) Query: 38 FTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVK-------VAGYSFYNTSEYSLS 89 ++ L+ LE + + ++ A F S+ + Sbjct: 35 LMFMKSLDDKELEAENMEMLGMTAKHVFPQTEEGQAIRWSRFKDLPAEQMFDVVSQKAFP 94 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + + ++ +F+++ + F F + LEKA SGI+ Sbjct: 95 FIKTMHSD-------NAFAESMED--AAFGF-NKPKTLEKA---------VSGIDELLSN 135 Query: 150 V--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + ++YE+++ + + F TP+ + ++ AL P + Sbjct: 136 YVQDADDLGDLYEYMLSKLNTAG--TNGQFRTPQHIRNMMVAL----------AGPKPGQ 183 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLI 261 + DP CGT GFL A + G + + + +L+ Sbjct: 184 LICDPACGTAGFLISAAESIRKNHGQEMTEEQWKTFSGEQFTGFDTDQTMVRISAMNLLL 243 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 ++ +I+ +LS+ +F L+NPPF D + ++ K Sbjct: 244 HSIDH-------PDIRNQDSLSRLNTIRDKFDLILANPPFTGSV--DVEDIDDSLK---- 290 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 + + +LF+ L+ GGR ++ + LF + ++R L Sbjct: 291 -----AVVETKQTELLFVALFLRMLK----LGGRCVCIVPNGVLFRSNSK-AYRQLRAEL 340 Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRN 436 ++N +EAI+ +P+ +F + ++T + + + KV L N R+ Sbjct: 341 VDNQRLEAIIYMPSGVFKPYS-GVSTAILVFTKT-DAGGTDKVWLYNMEGDGYTLDDKRD 398 Query: 437 EGKKRRIINDDQRRQ-ILDIYVSRENGKFSRMLDY-------RTFGYRRIKVLRPLRMSF 488 +K I D R LD R S ++ F + + + R+ + Sbjct: 399 PDEKHNDIPDILERWGNLDAEEQRARTDKSFLVPKSEIAENDYDFSFNKYAETKYERIEY 458 Query: 489 ILDKTGLARLEA 500 + LA L+ Sbjct: 459 PPTEEILADLDD 470 >gi|315608531|ref|ZP_07883516.1| type I restriction-modification system DNA-methyltransferase [Prevotella buccae ATCC 33574] gi|315249779|gb|EFU29783.1| type I restriction-modification system DNA-methyltransferase [Prevotella buccae ATCC 33574] Length = 505 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 85/447 (19%), Positives = 159/447 (35%), Gaps = 73/447 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95 L+ + E T Y A I + + + E + Sbjct: 33 MFFLK-VYDTQEETWE-----YKASKDRTIFESIIPEELRWRNWAIDEKDGDAMTGDALL 86 Query: 96 --TRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 + L + K +FED + ++ LL ++ + IE Sbjct: 87 SFINDKLFPTLKGLEVTRDTPRSKAIVKEVFEDLN-----QYMKNGILLRQVVNVINEIE 141 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 D + +IYE +++ S + A +F TPR + L SP Sbjct: 142 F-DDAADRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------SPV 188 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + T+ D T GTGGFLT A+N++ GQE +P + + + +L+ Sbjct: 189 LGETVGDFTSGTGGFLTSALNYLHKQVKTTDDGRLYQQAVIGQEWKPLPYLLSITNLLLH 248 Query: 263 RLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +E S NI+ +L D + + NPP+G + + Sbjct: 249 DVE-------SPNIRHCDSLGTKMSDFKEEDKVNVIAMNPPYGGSTDAASKSNFPMEL-- 299 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + S+ + LF++ + +L+ GRAA+++ LF + I++ Sbjct: 300 ----------RSSETADLFMVLIMYRLK----ANGRAAVIVPDGFLF--GTDGAKLAIKQ 343 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 +L + + I+ LP +F T+IAT + +N + E + + T + EG Sbjct: 344 KMLRDFNLHTIIRLPGSIFAPYTSIATNILFFNNER-AEGAEEGFSTDKTWFYRLDMPEG 402 Query: 439 ----KKRRIINDDQRRQILDIYVSREN 461 K + + + + I D + R+ Sbjct: 403 YKHFSKTKSMKLEHCQPICDWWNDRKE 429 >gi|317488606|ref|ZP_07947149.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA] gi|325831646|ref|ZP_08164863.1| N-6 DNA Methylase [Eggerthella sp. HGA1] gi|316912258|gb|EFV33824.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA] gi|325486517|gb|EGC88966.1| N-6 DNA Methylase [Eggerthella sp. HGA1] Length = 495 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 81/442 (18%), Positives = 154/442 (34%), Gaps = 68/442 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + A E + Y + + S+ A + S + L Sbjct: 33 LFFLK-IYDAKEEEWEFHDDSYESIIPDRLRWHSWAPDAK----DGSALTGDELL-DFVN 86 Query: 98 NNLESYIASF----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 N+L +A + + + F+ ++ LL ++ + Sbjct: 87 NDLFKTLAGLELDQNAPLRQVVVQAAFTDANNYMKDGILLRQVVNAIDESVDFTEYKERH 146 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 IYE +++ S + A +F TPR V +L +P + ++ D Sbjct: 147 AFGEIYEIILKDLQSAGN--AGEFYTPRAVTDFMAEML----------APKLGESVADFA 194 Query: 214 CGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 CGTGGFLT A+ +A + +G E + + +C+ ML+ ++ Sbjct: 195 CGTGGFLTSALKLLAKQVNTPSDQELYSKSIYGIEKKQLPYLLCITNMLLHDID------ 248 Query: 272 LSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + + ++L D G +F L NPP+G + F Sbjct: 249 -NPQVFHDNSLEHDVRDYRHKEGGQFDVVLMNPPYGGSEKAS-----------IQNNFPT 296 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 L + S+ + LFL + +L+ GR A+++ LF A E + R LL++ Sbjct: 297 AL-RSSETADLFLALILYRLKK----NGRVAVIIPDGFLFGQDAAKVEIKRR--LLKDMN 349 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKR 441 + +V +P +F T I T + N E + EG K Sbjct: 350 LHTVVRMPQSVFAPYTPITTNILFFDNTGKSE---------GVWFYRMGMPEGYKHFSKT 400 Query: 442 RIINDDQRRQILDIYVSRENGK 463 + I + ++ + + R+ + Sbjct: 401 KPIKSEHFNEVREWWNDRKEIE 422 >gi|295092360|emb|CBK78467.1| Type I restriction-modification system methyltransferase subunit [Clostridium cf. saccharolyticum K10] Length = 493 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 83/495 (16%), Positives = 167/495 (33%), Gaps = 56/495 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + A E E+Y++ + V ++ + L + Sbjct: 34 MLFLK-VYDAKEQDWEWDDEEYVSIIPEECRWRN-WAVDDHTGTALTGDKLLNFVNNTLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ S K F+ ++ LL ++ G++ D Sbjct: 92 PTLKKLPVDVSTPIKKAIVQTTFADANQYMKDGVLLRQVINVIDGLDFG-DYEESHAFGE 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + + +F TPR V ++ +P + + D CGTG Sbjct: 151 IYETILKEL--QSAGSSGEFYTPRAVTDFMAKMI----------NPQIGEQVADFACGTG 198 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT + + + +G E + + +C+ ML+ ++ Sbjct: 199 GFLTSWLKELETKIETTEDQAAYDRSIYGIEKKQFPYMLCITNMLLHGIDV-------PK 251 Query: 276 IQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I ++L KD+ +F L NPP+G + + F L Sbjct: 252 IYHDNSLLKDVLDYTMDDQFDVILMNPPYGGNEKTEVKNH-----------FPADLASSE 300 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F+ + +L+ GRAA++L LF + + I++ L + ++ Sbjct: 301 TADL-FMSVIMYRLKK----NGRAAVILPDGFLF--GTDNAKVAIKKKLFSEFNLHTVIR 353 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 +P +F T+I T + + K E +L D+ +N K + + Sbjct: 354 MPHSVFAPYTSITTNILFFDHTKPTEETWFYRL----DMPEGYKNF-SKTKPMELKHFAP 408 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 +D + +RE +D ++ ++ +D G E +I K Sbjct: 409 AMDWWNNREE----ITVDGFDKA-KKFTAEEIAARNYNIDLCGYPHEEEEILPPKELIQQ 463 Query: 512 QSFWLDILKPMMQQI 526 L + +I Sbjct: 464 YQEKRASLNADIDRI 478 >gi|254362757|ref|ZP_04978840.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica PHL213] gi|153094385|gb|EDN75236.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica PHL213] Length = 489 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 77/439 (17%), Positives = 157/439 (35%), Gaps = 73/439 (16%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG----------YSFYNTSEY-S 87 L+ + A E ++Y + + + +++ + SF N + + Sbjct: 34 LFLK-IYDAKEQEWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPT 92 Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L L I++ + + I F ++ LL ++ I+ Sbjct: 93 LKNL-----------PISADTPMNQRIIRAA-FEDNNNYMKNGVLLRQVINIIDEIDFA- 139 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +IYE++++ + + A +F TPR V + P + Sbjct: 140 HYQERHAFGDIYENILK--SLQSAGNAGEFYTPRAVTDFMVQAI----------KPKLGE 187 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + D CGTGGFLT A+ + + +G E + H +C+ +L+ ++ Sbjct: 188 RIADFACGTGGFLTSALKVLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID 247 Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + N+ + L K D +F L NPP+G + Sbjct: 248 -------NPNVHHDNALEKSVKDYTENDKFDVILMNPPYGGSEIEQIKKNFPTALQ---- 296 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 S+ + LF+ + +L+ GRAA+VL LF + + I++ LL Sbjct: 297 --------SSETADLFMSVIMYRLKQ----NGRAAVVLPDGFLF--GTDNAKVAIKKKLL 342 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 E + I+ LP +F T+I T + + + D+ +N K Sbjct: 343 EEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETW----VYRLDMPQGYKNF-SKT 397 Query: 442 RIINDDQRRQILDIYVSRE 460 + + + ++++ + +R+ Sbjct: 398 KPMKLEHFNEVVEWWGNRQ 416 >gi|261492692|ref|ZP_05989241.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495869|ref|ZP_05992299.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308461|gb|EEY09734.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311658|gb|EEY12812.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 489 Score = 156 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 77/439 (17%), Positives = 157/439 (35%), Gaps = 73/439 (16%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG----------YSFYNTSEY-S 87 L+ + A E ++Y + + + +++ + SF N + + Sbjct: 34 LFLK-IYDAKEQEWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPT 92 Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L L I++ + + I F ++ LL ++ I+ Sbjct: 93 LKNL-----------PISADTPMNQRIIRAA-FEDNNNYMKNGVLLRQVINIIDEIDFA- 139 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +IYE++++ + + A +F TPR V + P + Sbjct: 140 HYQERHAFGDIYENILK--SLQSAGNAGEFYTPRAVTDFMVQAI----------KPKLGE 187 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + D CGTGGFLT A+ + + +G E + H +C+ +L+ ++ Sbjct: 188 RIADFACGTGGFLTSALKVLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID 247 Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + N+ + L K D +F L NPP+G + Sbjct: 248 -------NPNVHHDNALEKSVKDYTENDKFDVILMNPPYGGSEIEQIKKNFPTALQ---- 296 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 S+ + LF+ + +L+ GRAA+VL LF + + I++ LL Sbjct: 297 --------SSETADLFMSVIMYRLKQ----NGRAAVVLPDGFLF--GTDNAKVAIKKKLL 342 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 E + I+ LP +F T+I T + + + D+ +N K Sbjct: 343 EEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETW----VYRLDMPQGYKNF-SKT 397 Query: 442 RIINDDQRRQILDIYVSRE 460 + + + ++++ + +R+ Sbjct: 398 KPMKLEHFNEVVEWWGNRQ 416 >gi|110834691|ref|YP_693550.1| type I restriction-modification system, M subunit [Alcanivorax borkumensis SK2] gi|110647802|emb|CAL17278.1| type I restriction-modification system, M subunit [Alcanivorax borkumensis SK2] Length = 533 Score = 156 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 93/541 (17%), Positives = 165/541 (30%), Gaps = 105/541 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLG 92 R L+ + V E+ A D G +F N S L Sbjct: 35 LMFARMLD-----MQEEVAERKAARSKKEFDRLFPNTPEGQLLRWKNFKNLSGKELHKHL 89 Query: 93 STNTRNNLESYIASFSDN-------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 S + A A LE + ++ Sbjct: 90 KNAVYPYFASLGQHAEEEGLGSEGSATQALGHIGEYMQDADLEIKNE-SVLVSAVEMVDN 148 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 P V +IYE+L+ + + F TPR ++ L+ P Sbjct: 149 LP-LTQSDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMVELI----------DPQP 195 Query: 206 IRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILVPH 243 + DP CGT GFL AM ++ + + + Sbjct: 196 TDVICDPACGTAGFLARAMEYLNRVHSSEAGTFEDEDGNKHYTGDLLEPYREHINKQMFW 255 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLS 297 G + + V M++ + NI +L+K F L+ Sbjct: 256 GFDFDTTMLRVSSMNMMLHGVNG-------ANILYQDSLNKSVKENYPEQEEDFFDIILA 308 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF E GL K +LF+ H+ L+ GGRAA Sbjct: 309 NPPF--------KGSLDETNTNPD---VLGLVKTKKTELLFVAHILRALK----LGGRAA 353 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 +++ LF + ++R L+EN+ +E IV+LP+ +F ++T + + + + Sbjct: 354 VIVPDGVLF--GSSKAHQQLRTELIENNQLEGIVSLPSGVFKPYAGVSTAILLFTKGGST 411 Query: 417 ERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQILDI--YVSRENGKFSRMLDYRTF 473 E +V + D ++ + DD I Y S + F Sbjct: 412 E---RVWFYDLQADGYSLDDKRTPLKGEGGDDLPDAIAKWKQYRELVEANASEKKIEKAF 468 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS--------PLHQSFWLDILKPMMQQ 525 G + + +F+++ +A + D++ + L L + ++ Sbjct: 469 GDKT-------QKAFVVNAADIASNKYDLSINRYKEVVYEEEEYEDPKVILKQLMALEEE 521 Query: 526 I 526 I Sbjct: 522 I 522 >gi|187732102|ref|YP_001882946.1| N-6 DNA methylase [Shigella boydii CDC 3083-94] gi|187429094|gb|ACD08368.1| N-6 DNA methylase [Shigella boydii CDC 3083-94] gi|320177258|gb|EFW52265.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Shigella dysenteriae CDC 74-1112] Length = 544 Score = 156 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 70/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ ++ + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVD-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|313159760|gb|EFR59117.1| N-6 DNA Methylase [Alistipes sp. HGB5] Length = 502 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 92/463 (19%), Positives = 169/463 (36%), Gaps = 79/463 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDL----------ESFVKVAGYSFYNTSEY- 86 L+ + E T E Y + ++ E+ A SF N + Sbjct: 33 MFFLK-VYDTQEETWEYKDENYKSIIPEDLRWRKWAVDEKDGEALTGEALLSFVNEKLFP 91 Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 +L L I + + AK+I ++ F+ ++ LL ++ + IE Sbjct: 92 TLKNL-----------PIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF- 138 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 D +IYE +++ S + A +F TPR + +L P + Sbjct: 139 DDADDRHTFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLG 186 Query: 207 RTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T D T GTGGFLT A+N+V+ + GQE +P + + + +L+ + Sbjct: 187 ETFGDFTSGTGGFLTSALNYVSKSVSSAEDGEKLQNAVVGQEWKPLPYLLSITNLLLHDI 246 Query: 265 ESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 E + NI +L D + NPP+G +D+V+ Sbjct: 247 E-------APNIANCDSLGTNITDFKESDKVDVIGMNPPYGGST---EDSVKSNFPMQY- 295 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 + S+ + LF+ + +L+ GGR +++ LF + ++ L Sbjct: 296 --------RSSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENL 341 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-- 438 L + I+ LP +F T+IAT + +N + E + T + EG Sbjct: 342 LRKFNLHTIIRLPGSIFSPYTSIATNILFFNNEEAEGCKEG-FKTKETWFYRLDMPEGYK 400 Query: 439 --KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473 K + + + I + + R+ G+ SR+ + Sbjct: 401 HFSKTKPMKVEHTLPIQEWWKDRKEIISDEVGEKSRVFTAQQL 443 >gi|260910278|ref|ZP_05916954.1| type I restriction-modification system [Prevotella sp. oral taxon 472 str. F0295] gi|260635602|gb|EEX53616.1| type I restriction-modification system [Prevotella sp. oral taxon 472 str. F0295] Length = 505 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 86/465 (18%), Positives = 166/465 (35%), Gaps = 79/465 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95 L+ + E T Y A + + + E + L Sbjct: 33 MFFLK-VYDTQEETWE-----YKASKDHKPFDSIIPEELRWRNWAIDEKDGNALTGDALL 86 Query: 96 --TRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 + L + + K +FED + ++ LL ++ + IE Sbjct: 87 TFINDKLFPTLKALEVTRETPRSKAIVKEVFEDLN-----QYMKNGILLRQVINVINEIE 141 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 D + +IYE +++ S + A +F TPR + L +P Sbjct: 142 F-DDAEDRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------NPV 188 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + T+ D T GTGGFLT A+N++ ++ GQE +P + + + +L+ Sbjct: 189 LGETVGDFTSGTGGFLTSALNYLQKQVQTTNAGRLYQQSVVGQEWKPLPYLLSITNLLLH 248 Query: 263 RLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +E + NI+ +L D R + NPP+G + + Sbjct: 249 DVE-------APNIRHCDSLGTKMSDFKETDRVNVIAMNPPYGGSTDAAAKSNFPMEF-- 299 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + S+ + LF++ + +L+ GRAA+++ LF + I++ Sbjct: 300 ----------RSSETADLFMVLIMYRLKRD----GRAAVIVPDGFLF--GMDGAKLAIKQ 343 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 +L + I+ LP +F T+IAT + +N + + + + T + EG Sbjct: 344 KMLREFNLHTIIRLPGSIFSPYTSIATNILFFNNER-VDGAEEGFSTDKTWFFRLDMPEG 402 Query: 439 ----KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473 K + + + + I D + R+ G+ SR + Sbjct: 403 YKHFSKTKSMRLEHCQPICDWWNDRKEISSDELGEKSRCFSAKEL 447 >gi|300925836|ref|ZP_07141684.1| N-6 DNA Methylase [Escherichia coli MS 182-1] gi|300418088|gb|EFK01399.1| N-6 DNA Methylase [Escherichia coli MS 182-1] Length = 544 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|317180666|dbj|BAJ58452.1| Type I restriction enzyme M protein [Helicobacter pylori F32] Length = 543 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 184/544 (33%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68 ++ +I L + L E + E+ F + ID Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFSEEEKEDFFLTLIDKRLPK 90 Query: 69 --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121 + + +N ++ L + +N + S + I FE + Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R L KNF + + + I+E+L++ + S+ ++ Sbjct: 151 EESKRANFTRALLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTN 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLNN 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAIVVPTG--FISAKSGIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 K +V LI+A+ L K+ + + IL+ + ++ + F + Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRESDIDLILETFQNKTQKADFCTL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI-------TWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L QS +IL+ Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFEKLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|268686736|ref|ZP_06153598.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035] gi|268627020|gb|EEZ59420.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035] Length = 495 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 149/353 (42%), Gaps = 44/353 (12%) Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + +G + I+E+LI+ + S ++ TP V + +L+ Sbjct: 109 RALISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV 168 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 + S +YDP+ G+G L + + + + + + Q++ ++ Sbjct: 169 PEEVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSS 216 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEK 307 + L + N+ QG+T+ K+F + +SNPPF + Sbjct: 217 NLLR-----LNLILNNLVHSLNNVVQGNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSD 271 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVL 360 +D +E + RF G+PKI LF+ H+ L+ G+AAIVL Sbjct: 272 FRDQLESDENRE---RFFAGIPKIKAKDKDKMEIYQLFIQHILFSLKE----NGKAAIVL 324 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + F + +IR +L+EN ++ +V++P+++F T + + + Sbjct: 325 PTG--FITAQSDIDKKIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK----TNKD 378 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 KV LI+A+ L I++ ++ +++ ++ ++I + + +++ + FS ++ Y Sbjct: 379 KVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNKQAVEDFSVVVGYDE 431 >gi|82546467|ref|YP_410414.1| type I restriction enzyme M protein [Shigella boydii Sb227] gi|81247878|gb|ABB68586.1| putative type I restriction enzyme M protein [Shigella boydii Sb227] gi|320185254|gb|EFW60031.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Shigella flexneri CDC 796-83] gi|332087071|gb|EGI92205.1| N-6 DNA Methylase family protein [Shigella boydii 3594-74] Length = 544 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 69/450 (15%), Positives = 150/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ ++ + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVD-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +E ++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLETVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|213964709|ref|ZP_03392909.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium amycolatum SK46] gi|213952902|gb|EEB64284.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium amycolatum SK46] Length = 531 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 120/329 (36%), Gaps = 53/329 (16%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 +E L + + ++L M ++YE+++ + VS F T + ++ L Sbjct: 125 IENPNTLKSVMTLINKLDLRNKDF----MGDLYEYMLSKLS--VSGTNGQFRTSQLIIDL 178 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPI 239 L+ P + DP CGT GFL +A + D S Sbjct: 179 MVELM----------RPSPSERIIDPACGTAGFLVNASEWIRDYHSDELMKKSVRDQFEA 228 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSN 298 G + + + M + S NI +L + + F L+N Sbjct: 229 HGLTGYDFDSTMVRISAMNMFMHGFN-------SPNIAYRDSLGTIPDEDKESFDLILAN 281 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF D+ ++KE + L K +LF+ + L GGRAA+ Sbjct: 282 PPFAGSV--DESNLDKELTS---------LGKTKKTELLFINRFLSLLR----IGGRAAV 326 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ LF + IR+ L+EN ++AI+ LP+ F T ++T + + + + Sbjct: 327 IVPEGVLF--GSTKAHKAIRKELVENQKLDAIIKLPSGAFKPYTGVSTAILCFTRTDS-K 383 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIIND 446 V ++ R+ KR + Sbjct: 384 ANDDVWFY---EVLADGRSLDDKRTELLP 409 >gi|167917015|ref|ZP_02504106.1| N-6 DNA methylase [Burkholderia pseudomallei BCC215] Length = 485 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 95/464 (20%), Positives = 162/464 (34%), Gaps = 82/464 (17%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ ++ ++ + K L + D E A +F NT + L Sbjct: 33 MFFLKIIDDQDQQLEVMQDGYRSPIPKALQWRTWAADPEGITGDALIAFINTELFPQLKE 92 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L T N S + +FE ++ L+ ++ SG++ D Sbjct: 93 LPVTGKNANR-------SRVVRGVFE-----DAYNYMKSGQLMRQVVNKISGVDF-NDLA 139 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +IYE L+ S + A ++ TPR V + P L+ Sbjct: 140 ERKHFGDIYEQLLNDLQSAGN--AGEYYTPRAVTAFMVDRI----------DPKPGEILF 187 Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP+ GTGGFLT ++ H+ D + E + H +CV ML+ +E Sbjct: 188 DPSVGTGGFLTCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLPHMLCVTNMLLHGIEDP 247 Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 ++ +TL++ + R L+NPPFG K ++G F Sbjct: 248 SF------VRHDNTLARPYISYGQADRVDIILTNPPFGGKE-----------EDGIESNF 290 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + + + LFL L+ GGRA IVL LF + ++ LLE Sbjct: 291 PAHL-RTKETADLFLALFIRLLKP----GGRAGIVLPDGSLFGEGVK---TRLKAQLLEE 342 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK--- 440 + IV LP +F +I T L + + + EG+K Sbjct: 343 CNLHTIVRLPNSVFKPYASIGTNLLFFDKGEPTKD---------VWFYEHRVPEGQKAYS 393 Query: 441 -RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTFGYRRI 478 R I + + ++ + R+ + + + RR Sbjct: 394 MTRPIRLEHLQDCVEWWGGAARKGRQETEQAWKVSLADIKARRY 437 >gi|328947486|ref|YP_004364823.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489] gi|328447810|gb|AEB13526.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489] Length = 500 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 160/470 (34%), Gaps = 63/470 (13%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGK-----VILPFTLLRRLECALEPTRSAVREKYLAF 62 ++L++F+ + + + G I L+ + A E EKY + Sbjct: 1 MSNLSSFVKRIRDVMRN--DAGINGDAQRIEQIAWMLFLK-VYDAKEEDWEFEDEKYESI 57 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + ++ + L + L++ S + F Sbjct: 58 IPEELRWRNWAHTENQG-DGLTGDKLLNFVNNKLFPTLKNLEISPDTPIRQSIVRTTFED 116 Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 ++ LL +I ++ IYE +++ + + A +F TPR Sbjct: 117 ANNYMKDGVLLRQIVNIIDELDFG-SYEETHAFGEIYETILKEL--QSAGSAGEFYTPRA 173 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHK 235 V ++ P + T+ D CGTGGFL+ + + + Sbjct: 174 VTQFMAKMI----------KPQIGETMADFACGTGGFLSSWIKELEEVKDAKGSISNEES 223 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRF 292 + E + + +CV ML+ L+ S + G++L D F Sbjct: 224 EKIYNSIYAVEKKQFPYMLCVTNMLLHGLD-------SPKVYHGNSLIYKLLDYTQKDAF 276 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L NPP+G + D F L + S+ + LF+ + +L+ Sbjct: 277 DVILMNPPYGGSEKDDIKQN-----------FPADL-RSSETADLFMAVIMYRLKK---- 320 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411 GRAA+++ LF + ++ +++ LL + + IV LP +F T+I T + + Sbjct: 321 NGRAAVIVPDGFLF--GNDNAKNNLKKKLLTDFNLHTIVRLPGSVFSPYTSITTNILFFN 378 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 N EE GK S R K + + + + R+ Sbjct: 379 N---EEPTGKTWFY--RVDIPSDRKHFSKTKPMELKHFDDCIAWWNDRKE 423 >gi|167892258|ref|ZP_02479660.1| N-6 DNA methylase [Burkholderia pseudomallei 7894] Length = 472 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 95/464 (20%), Positives = 162/464 (34%), Gaps = 82/464 (17%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ ++ ++ + K L + D E A +F NT + L Sbjct: 20 MFFLKIIDDQDQQLEVMQDGYRSPIPKALQWRTWAADPEGITGDALIAFINTELFPQLKE 79 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L T N S + +FE ++ L+ ++ SG++ D Sbjct: 80 LPVTGKNANR-------SRVVRGVFE-----DAYNYMKSGQLMRQVVNKISGVDF-NDLA 126 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +IYE L+ S + A ++ TPR V + P L+ Sbjct: 127 ERKHFGDIYEQLLNDLQSAGN--AGEYYTPRAVTAFMVDRI----------DPKPGEILF 174 Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP+ GTGGFLT ++ H+ D + E + H +CV ML+ +E Sbjct: 175 DPSVGTGGFLTCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLPHMLCVTNMLLHGIEDP 234 Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 ++ +TL++ + R L+NPPFG K ++G F Sbjct: 235 SF------VRHDNTLARPYISYGQADRVDIILTNPPFGGKE-----------EDGIESNF 277 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L + + + LFL L+ GGRA IVL LF + ++ LLE Sbjct: 278 PAHL-RTKETADLFLALFIRLLKP----GGRAGIVLPDGSLFGEGVK---TRLKAQLLEE 329 Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK--- 440 + IV LP +F +I T L + + + EG+K Sbjct: 330 CNLHTIVRLPNSVFKPYASIGTNLLFFDKGEPTKD---------VWFYEHRVPEGQKAYS 380 Query: 441 -RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTFGYRRI 478 R I + + ++ + R+ + + + RR Sbjct: 381 MTRPIRLEHLQDCVEWWGGAARKGRQETEQAWKVSLADIKARRY 424 >gi|307312949|ref|ZP_07592577.1| N-6 DNA methylase [Escherichia coli W] gi|306907117|gb|EFN37624.1| N-6 DNA methylase [Escherichia coli W] gi|315063582|gb|ADT77909.1| N-6 DNA methylase [Escherichia coli W] gi|323380337|gb|ADX52605.1| N-6 DNA methylase [Escherichia coli KO11] Length = 544 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFTPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|323340689|ref|ZP_08080941.1| type I restriction-modification system DNA-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091812|gb|EFZ34432.1| type I restriction-modification system DNA-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 491 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 75/459 (16%), Positives = 160/459 (34%), Gaps = 70/459 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLG 92 L+ + + E S I E + + ++ + S +L Sbjct: 34 MLFLKVYDA-----KEQEWEFDDDDYMSIIPEE--CRWSNWAHDDKSGTAMTGDTLLNFV 86 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + L++ K F+ ++ LL+++ ++L D Sbjct: 87 NNTLFPTLKTLPVDAKTPIKKAIVQTTFADANNYMKDGVLLHQVINVIDELDLS-DYEES 145 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 IYE +++ + + + +F TPR V ++ P + + D Sbjct: 146 HAFGEIYETILKEL--QSAGSSGEFYTPRAVTDFMAQMI----------RPQIGEKMADF 193 Query: 213 TCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 CGTGGF+T + + + + +G E + + +C+ ML+ L+ Sbjct: 194 ACGTGGFITSWLKELHNQTKNVDDEEAYASSIYGIEKKQFPYMLCITNMLLHDLDV---- 249 Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + G++L + D +F+ L NPP+G + D F Sbjct: 250 ---PQVYHGNSLLRDVLDYTEDDQFNVILMNPPYGGSEKADVKNH-----------FPAD 295 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 L + F+ + +L+ GRAA++L LF + + I++ LL + Sbjct: 296 LASSETADL-FMSVIMYRLKQD----GRAAVILPDGFLF--GTDNAKISIKKKLLSEFNL 348 Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 I+ +P+ +F T+I T + E ++ D+ ++ K + + Sbjct: 349 HTIIRMPSSVFSPYTSITTNILFFDRTHPTEEIWFYRM----DMPEGYKHF-SKTKPMKL 403 Query: 447 DQRRQILDIYVSREN---------GKFSRMLDYRTFGYR 476 + +++ + +R+ K++ FGY Sbjct: 404 EHFAPVIEWWNNRQEINVDGFDKAKKYTVQQLTEDFGYN 442 >gi|89899860|ref|YP_522331.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] gi|89344597|gb|ABD68800.1| N-6 DNA methylase [Rhodoferax ferrireducens T118] Length = 516 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 113/304 (37%), Gaps = 50/304 (16%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 LL K+ + + ++YE+++ + F TPR ++ L + Sbjct: 129 LLAKVVDLLDHVPME----DRDTKGDLYEYMLSNIA--SAGQNGQFRTPRHIIRLMVEM- 181 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHG 244 +P + DP GT GFL ++ + + + HG Sbjct: 182 ---------TAPTAKDVICDPASGTCGFLVATGEYLREKHPEILRNPASREHFHHGMFHG 232 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGK 303 + + + M + ++ + +I+ +L++D + R+ L+NPPF Sbjct: 233 FDFDNTMLRIGSMNMALHGVD-------NPDIRYQDSLAQDHAGDEGRYSLILANPPFAG 285 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + + A + + K +LFL L+ GGRAA+++ Sbjct: 286 SLDYENTAKDL-----------LAIVKTKKTELLFLALFLRLLKP----GGRAAVIVPDG 330 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 LF + E+RR ++E ++A+++LP+ F ++T + + + + V Sbjct: 331 VLF--GSSKAHKELRRMIVEEQKLDAVISLPSGAFKPYAGVSTAILLFTKTNSG-GTDNV 387 Query: 423 QLIN 426 + Sbjct: 388 WFYD 391 >gi|331678991|ref|ZP_08379663.1| type I restriction-modification system, M subunit [Escherichia coli H591] gi|331073056|gb|EGI44379.1| type I restriction-modification system, M subunit [Escherichia coli H591] Length = 544 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|253689249|ref|YP_003018439.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755827|gb|ACT13903.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 544 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 73/454 (16%), Positives = 153/454 (33%), Gaps = 86/454 (18%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + S Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFASEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQS 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 GASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKSLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSHHK------------------------------IPPILVPHGQELEPETHAVCV 256 + + S + + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRDHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSINFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL+ + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDPSLLATV-KTKKTELLFLVRILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA+V LP+ +F +AT + I + + V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVVNLPSGVFKPYAGVATAILIFTKG---GQTDNVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + KR I D+ ++ + K Sbjct: 419 DGY---SLDDKRNQIKDNDLPHLIASWKCYRQSK 449 >gi|328947974|ref|YP_004365311.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489] gi|328448298|gb|AEB14014.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489] Length = 508 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 81/521 (15%), Positives = 180/521 (34%), Gaps = 84/521 (16%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS---------- 84 I ++ L+ + A N++ + G FY Sbjct: 32 ITYLIFIKMLDDNQIKIERKINSLVAAGVEVNLEDYDLIFKDG--FYIDEEDKINCSYAD 89 Query: 85 -EYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDF-DFSSTIAR----LEKAGLLYKI 136 +S+ + N + +NL++ + F N + F+ + + + +L K+ Sbjct: 90 LRWSVFSTWGDNGKKFDNLKNNVFPFIKNLHG--DKVTSFAKYMEKAEFAISNPYILGKM 147 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + S +L + +M + YE+L+ + + F TPR ++ + + Sbjct: 148 IEALSDPDLGFNKTD--IMGDCYEYLLSKMATSG--DNGQFRTPRHIIDMMVEI------ 197 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEP----- 249 PG+ T+ DP GT GFL+++ ++ + + H + Sbjct: 198 ----AKPGLTDTIIDPAMGTAGFLSESAKYIKEHFAKELTNKTNNQHFHNKMFTGFDTDT 253 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + + M + +E + I+ ++L +D L+NPPF + Sbjct: 254 DMLRIGCMNMTLHGVE-------NPVIKYNNSLGEDYEEKDSHTLILANPPFSGSLDPST 306 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 A +G G K + + GGR ++ L N Sbjct: 307 VAKSLNQISG-------GTKKTE-------LLFLSLFLRLLKTGGRCVSIIPVGVLNNTN 352 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428 +++R+ L+EN +E ++ +P +F+ + + T + I + KV + N Sbjct: 353 -DKAYTKLRKELVENQKLEGVIFMPGGVFYPYSGVQTGILIFTKT-NAGGTDKVWMYNME 410 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDYRT-------FGY 475 + + +KR I + I++ + +R+ + S ++D + F + Sbjct: 411 NDGY---SLDQKRDAIEANDIPDIINRWNNRDKEAERTHYEKSFLVDKQEIVDNDYVFSF 467 Query: 476 RRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFW 515 + + + + K A + E + + K+ Q Sbjct: 468 NKYQKKEVEKKEYRPVKEIFASINELEKQFAKVMKELQGEI 508 >gi|60680961|ref|YP_211105.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC 9343] gi|60492395|emb|CAH07164.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC 9343] Length = 506 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 89/461 (19%), Positives = 162/461 (35%), Gaps = 71/461 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E T Y A S K + + E L Sbjct: 33 MIFLK-VYDTQEETWE-----YKASRESKTYQSIIPKDLRWRNWAVDEKDGEALTGEALL 86 Query: 98 NNLESYI---------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + + + AK+I ++ F+ ++ LL ++ + IE D Sbjct: 87 SFVNEKLFPALKNLPVDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF-DD 144 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 +IYE +++ S + A +F TPR + +L P + T Sbjct: 145 ADDRHTFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGET 192 Query: 209 LYDPTCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 D T GTGGFLT A+N++ + GQE +P + + + +L+ +E Sbjct: 193 FGDFTSGTGGFLTSALNYMGKSVRSAEDGEKLQNAVVGQEWKPLPYLLSITNLLLHDIE- 251 Query: 267 DPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + NI +L D + NPP+G E KN R Sbjct: 252 ------APNIANCDSLGTNVTDFKETDKVDVIGMNPPYGGS-------TEDSVKNNFPLR 298 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + + S+ + LF+ + +L+ GGR +++ LF + ++ LL Sbjct: 299 Y-----RSSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENLLR 347 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG---- 438 + I+ LP +F T+IAT + +N + E T + EG Sbjct: 348 KFNLHTIIRLPGSIFSPYTSIATNILFFNNEEAEGCEEG-FKTKETWFYRLDMPEGYKHF 406 Query: 439 KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473 K + + + I + + R+ G+ SR+ + Sbjct: 407 SKNKPMKVEHTLPIQEWWNDRKEIVSSETGEKSRVFTAQQL 447 >gi|194451585|ref|YP_002048347.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409889|gb|ACF70108.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 544 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|309704073|emb|CBJ03419.1| DNA methylase M [Escherichia coli ETEC H10407] Length = 544 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 70/450 (15%), Positives = 150/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFTPEQQELRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLVPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I ++ +L + Sbjct: 419 DGY---SLDDKRNPIKENDLPHLLASWKHY 445 >gi|240125823|ref|ZP_04738709.1| hypothetical protein NgonSK_06352 [Neisseria gonorrhoeae SK-92-679] gi|268684422|ref|ZP_06151284.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679] gi|268624706|gb|EEZ57106.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679] Length = 533 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 89/501 (17%), Positives = 188/501 (37%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ + S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336 K+F + +SNPPF + +D +E + + RF G+P M Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENHE---RFFAGIPKIKPTKKEKM 338 Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----VNKDKVVLIDASGLGEKISINDNQKTVLSHEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + ++ + FS ++ Y Sbjct: 449 CHTFTHKQAVEDFSVVVGYDE 469 >gi|228288746|ref|YP_002841998.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51] gi|228014316|gb|ACP50076.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51] Length = 521 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 105/564 (18%), Positives = 185/564 (32%), Gaps = 100/564 (17%) Query: 15 IWKNAEDLWGDF-KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W A D K T++ + LR + E + + ++ S I E Sbjct: 16 LWNIANIFRSDIVKPTEYLEEFSYLFFLRLFDEQ-EIYQENIAKELGEDYKSTIPSE--- 71 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTR-------------NNLESYIASFSDNAKAIFEDFDF 120 Y F+N + + S + NL D ++I + F Sbjct: 72 ----YRFFNWACDPRNYARSKGFKTVTEFLDKMFLDLANLPDTGDPKIDEDRSIIKKI-F 126 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 S+ R++ + ++ ++L D + YE L+ + G + + F T Sbjct: 127 SNKTRRMQNDNTVIQVIDRLRLLKLPGDEGRKFDALGRGYEFLMYKLGQQGN--YGQFFT 184 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238 PR++V ++ P + DP GTGGFL A +V Sbjct: 185 PRNIVSFMVRII----------DPNPGEVILDPAAGTGGFLVKAFEYVKQKIERQITNEA 234 Query: 239 ---------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLF 287 +G E P+ + + + + D S N + LS Sbjct: 235 DKEIKIRELKHNLYGIEKAPDVFKLGLMNLRLHG-------DGSSNFENLDALSGSVQGA 287 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 ++ +NPPFG G F + F+ + + ++ Sbjct: 288 YKEKADVITTNPPFG------------PFSGEPTGNFKYKFKRFETY---FIQAIMDMVK 332 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406 GGR A V+ LFN IRR L++ IEA+ +LP +F + T Sbjct: 333 P----GGRVATVMLEGLLFNENYEG----IRRDLVDKFKIEAVFSLPAGVFLPYSAAKTD 384 Query: 407 LWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR-QI---------LDI 455 + + K E+ KV N ++ R+ I D ++ I L+I Sbjct: 385 ILVFRRPNKGEKTTDKVLFFNIESDGYELK---PTRKPIGDCDKKGDIDGCGDLPLALEI 441 Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD--KTGLARLEADITWRK-LSPLHQ 512 Y + G+ + Y + V + + LD RLE + K L L + Sbjct: 442 YQKFKRGE---EIPQTE-QYFVVDVEEIRKHDYRLDINVYRKVRLEEENADPKQLIELME 497 Query: 513 SFWLDILKPMMQQIYPYGWAESFV 536 + D +K + + G + Sbjct: 498 TNLSDAMKRLNELKKILGIGDENE 521 >gi|261392483|emb|CAX50032.1| putative type I restriction-modification system M protein [Neisseria meningitidis 8013] Length = 533 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 82/472 (17%), Positives = 178/472 (37%), Gaps = 57/472 (12%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-----SFVKVAGYSFY 81 +F +I L + L + VR++ ++++ + +K Y Sbjct: 29 DGNEFK-IISQAFLYKFLNDKYDFEVKKVRKENPNDPIEFVNMDIEGKTAVLKPEHSIKY 87 Query: 82 NTSE---YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL----LY 134 + + L + FS + + F + G Sbjct: 88 LSERQNGADFAKLFDDTLTDIAACNAELFSVKTEGGAKIVLFERISQYITDEGRRDDFCR 147 Query: 135 KICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + +G + I+E+LI+ + S ++ TP V + +L+ Sbjct: 148 ALISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVP 207 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 D S +YDP+ G+G L + + + + + + Q++ ++ Sbjct: 208 EDVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSSN 255 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKD 308 + L + N+ QG+T+ K+F + +SNPPF + Sbjct: 256 LLR-----LNLILNNLVHSLNNVVQGNTILSPAHKDASGCLKKFDFIVSNPPFKLDFSDF 310 Query: 309 KDAVEKEHKNGELGRFGPGLP---KISDGSM----LFLMHLANKLELPPNGGGRAAIVLS 361 +D +E + + RF G+P M LF+ H+ L+ G+AAIVL Sbjct: 311 RDRLESDENHE---RFFAGIPKIKPTKKEKMEIYQLFIQHILFSLKE----NGKAAIVLP 363 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 + F + +IR +L+EN ++ +V++P+++F T + + + K Sbjct: 364 TG--FITAKSGIDKKIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK----VNKDK 417 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 V LI+A+ L I ++ +++ ++ ++I + + +++ + FS ++ Y Sbjct: 418 VVLIDASGLGEKISINDNQKTVLSCEEEQKICNTFTNKQAVEDFSVVIGYDE 469 >gi|312965802|ref|ZP_07780028.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75] gi|312289045|gb|EFR16939.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75] Length = 544 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E + +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSKNFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ +L + Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445 >gi|256810223|ref|YP_003127592.1| N-6 DNA methylase [Methanocaldococcus fervens AG86] gi|256793423|gb|ACV24092.1| N-6 DNA methylase [Methanocaldococcus fervens AG86] Length = 502 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 92/495 (18%), Positives = 174/495 (35%), Gaps = 82/495 (16%) Query: 11 LANFIWKNAEDLW---GDFKHTDFGKVILPFTLLRRLECAL-----------EPTRSAVR 56 + + I + L G TD+ + + L+ E E + Sbjct: 8 IRSEIKTACDILRTDDGTSGATDYIEQLSWLLFLKVFEGVEEELEEIAILNGEEYIPVID 67 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAI 114 +KY + D K F + + + + + + + + N Sbjct: 68 KKYRWSNWAKRDWIGKPKECLKEFVDDVDEEFKKIDKPENAIIHFINNILFPYLRNLSGT 127 Query: 115 FEDFDFSSTI-----ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 E + +++ L + + I+ + +V+S IYE ++ GSE Sbjct: 128 PEREKVAQIFMEISGNKMKSPYNLMDVIEKIDKIDPR-NYEDTQVLSQIYEEILLNMGSE 186 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + +F TPR V+ ++ P + ++DP G+ GFL +A ++ D Sbjct: 187 AG-WSGEFYTPRPVIRFIVKII----------KPKVGEKIFDPFGGSAGFLVEAYKYIKD 235 Query: 230 CGSH------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +I +G E +P + + M++ + L+ N + ++L Sbjct: 236 KLGDKITVQEEEILQRETFYGHEKKPLPYLLGTMNMILHGI-------LTPNYYRRNSLM 288 Query: 284 KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 +D+ +++ ++NPPFG K K F + L L Sbjct: 289 EDVHNVPEHEKYDVIMTNPPFGGKENKIVQ-----------NNFPY---PVQATEALALQ 334 Query: 341 HLANKLELPPNGGGRAAIVLS-SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 ++ KL+ GGRAA++L +F G EIRR LLE + AIV+LP +F Sbjct: 335 YIMRKLKD----GGRAAVILPEGQIMFGGGK---FKEIRRELLEKFNVFAIVSLPQGVFS 387 Query: 399 -FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + T + K+ E ++ +T K+ I D L + Sbjct: 388 QMGAGVKTNIVFF--EKSGEPTKEIWYYELEGKFT-------KKNKIKDKDFEDALKKFE 438 Query: 458 SRENGKFSRMLDYRT 472 RE + S ++ Sbjct: 439 KREISENSWIVSIEE 453 >gi|270296273|ref|ZP_06202473.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273677|gb|EFA19539.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 502 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 165/454 (36%), Gaps = 61/454 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ + E T EKY + ++ + K G + + S Sbjct: 33 MFFLK-VYDTQEETWEWKDEKYKSIIPEDLRWRNWAIDKKDGEALTGEALLSFVNEKLFP 91 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 T NL I + + AK+I ++ F+ ++ LL ++ + IE D Sbjct: 92 TLKNL--PIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF-DDADDRHTF 147 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +IYE +++ S + A +F TPR + +L P + T D T G Sbjct: 148 GDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETFGDFTSG 195 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TGGFLT A+ ++ GQE +P + + + +L+ +E + Sbjct: 196 TGGFLTSALKYMGRNIGSAADGEKLQNAVVGQEWKPLPYLLSITNLLLHDIE-------A 248 Query: 274 KNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 NI +L D + NPP+G +D+V+ + Sbjct: 249 PNITNCDSLGTNVTDFKESDKVDVIGMNPPYGGST---EDSVKSNFPVQY---------R 296 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S+ + LF+ + +L+ GGR +++ LF + ++ LL + I Sbjct: 297 SSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENLLRKFNLHTI 350 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIIN 445 + LP +F T+IAT + +N + E T + EG K + + Sbjct: 351 IRLPGSIFSPYTSIATNILFFNNEEAEGCEEG-FKTKETWFYRLDMPEGYKHFSKTKPMK 409 Query: 446 DDQRRQILDIYVSREN------GKFSRMLDYRTF 473 + I + + R+ G+ SR+ + Sbjct: 410 VEHTLPIQEWWKDRKEIISDEVGEKSRVFTAQQL 443 >gi|163756220|ref|ZP_02163335.1| type I restriction-modification system, M subunit [Kordia algicida OT-1] gi|161323832|gb|EDP95166.1| type I restriction-modification system, M subunit [Kordia algicida OT-1] Length = 476 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 159/491 (32%), Gaps = 83/491 (16%) Query: 38 FTLLRRLECALEP------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 ++ E + ++L + D E F TL Sbjct: 34 MLFMKIFADKEEEWEITIDNYESPIPEHLKWQNWAADDEGLTGDPLMEF--IENELFPTL 91 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + S AK I F T ++ L ++ + I+ T Sbjct: 92 KELDIT---------ISPQAK-IIRSV-FEDTYNYMKNGTLFRQVINVINEIDF-NSTTE 139 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + ++IYE +++ + + + ++ TPR V ++ +P + ++ D Sbjct: 140 RHLFNDIYETILKDL--QSAGSSGEYYTPRAVTQFMVDMV----------NPQLGESVLD 187 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P CGTGGFLT ++ V + K G E +P H +C +++ + Sbjct: 188 PACGTGGFLTCTIDAVRNQVKTPKDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDL--- 244 Query: 270 RDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +++ + LSK D + LSNPPFG ++D E Sbjct: 245 ----PVVRRDNLLSKPYADWGAKDKLDIILSNPPFGG---VEEDGTETNFPKKF------ 291 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + + + LFL + L+ GR AIVL LF + ++ LL Sbjct: 292 ---RTKETADLFLALIIKLLKDK----GRCAIVLPDGTLFGEGMK---TRLKEELLHKCN 341 Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 + IV LP +F T I T L + + K + IN Sbjct: 342 LHTIVRLPNGVFNPYTGIKTNLLFFEKGTPTKEVWYY-----EHQYPKGAKSYNKTKPIN 396 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI------------KVLRP--LRMSFILD 491 + + R KF+ + R + P L F Sbjct: 397 IKEFEVEKKWWHQRVENKFAWKVSIDEIKKRNYNLDIKNPHQEADTLESPEILLEKFRTT 456 Query: 492 KTGLARLEADI 502 +T ++ ++ +I Sbjct: 457 ETKISSIQDEI 467 >gi|317009085|gb|ADU79665.1| type I restriction enzyme M protein [Helicobacter pylori India7] Length = 544 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 88/552 (15%), Positives = 189/552 (34%), Gaps = 84/552 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83 ++ +I L + L + + + D + F K F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCD-----KFEFFFEQEFPNKTIRDYKDFKKEEKEDFFLTLSD 85 Query: 84 -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA- 130 + LS L + +N L++ S N +F T L ++ Sbjct: 86 KKLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESV 145 Query: 131 --------------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173 +L KNF+ + + + I+E+LI+ + + Sbjct: 146 SQYINEESKRANFTRVLLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLIKDYNNNSGGT 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL+ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLV--------SVPTQSVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ + KN +G+TL+ + Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKDFKG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 + Y +SNPPF + + + + + F G+P +D S LF H Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AI++ + F E++I R L++ L+ +V +P+ +F T Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGIENKIVRHLVDEKLVYGVVCMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462 + +KT +V LI+A+ L K+ + + IL+ + ++ + Sbjct: 414 NVSIIFF--KKTPSENEEVILIDASKLGEEYTENKNKKTRLRKNDIDLILETFQNKTQKA 471 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F ++ + + + + +++ E + ++ S S + + Sbjct: 472 DFCALVSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 531 Query: 523 MQQIYPYGWAES 534 + + G Sbjct: 532 QEILETLGNLNY 543 >gi|116629553|ref|YP_814725.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus gasseri ATCC 33323] gi|238854088|ref|ZP_04644437.1| type I restriction-modification system methyltransferase subunit [Lactobacillus gasseri 202-4] gi|311110804|ref|ZP_07712201.1| type I restriction-modification system, M subunit [Lactobacillus gasseri MV-22] gi|116095135|gb|ABJ60287.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus gasseri ATCC 33323] gi|238833295|gb|EEQ25583.1| type I restriction-modification system methyltransferase subunit [Lactobacillus gasseri 202-4] gi|311065958|gb|EFQ46298.1| type I restriction-modification system, M subunit [Lactobacillus gasseri MV-22] Length = 504 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 77/514 (14%), Positives = 164/514 (31%), Gaps = 64/514 (12%) Query: 35 ILPFTLLRRLECALEPT-RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 I ++ L+ + + + + Sbjct: 32 ITYLMFIKDLDDSDNRRRKDNAFLGLNDYKSIFDGEVQIDDDVVVDGDELRWSTFKDFAP 91 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDT 149 +++ + F N K ED F+ + + GLL K+ ++ I D Sbjct: 92 EKMFTVVQTEVFPFIKNLKN-GEDSSFARHMKDATFLIPTPGLLSKVVESLDEIYRLMDA 150 Query: 150 VPD---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + ++YE+L+ + + F TPR ++ + L+ +P Sbjct: 151 DVSKRADIRGDVYEYLLGKLSTAG--RNGQFRTPRHIIKMMVELM----------NPQAN 198 Query: 207 RTLYDPTCGTGGFLTDAMNHVA--------DCGSHHKIPPILVPHGQELEPETHAVCVAG 258 ++ DP GT GFL +A ++ D + G + +P + Sbjct: 199 DSICDPAAGTAGFLVEAAEYLQTKKSAEIYDSKESKDYFHNQLFTGYDTDPTMLRIGAMN 258 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ML ++ + I+ +LS ++ ++NPPF K D D+V + Sbjct: 259 MLTHGVD-------NPKIEYQDSLSDQNNDRDKYSLIMANPPF--KGSLDYDSVSDDLLK 309 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 K + GGR A ++ LF + IR Sbjct: 310 ---------TCKTKKTE----LLFLTLFLKMLRVGGRCACIVPDGVLF--GSSKAHKSIR 354 Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 + L+E++ +EA++++P+ +F ++T + I + KV + T + Sbjct: 355 KVLVEDNNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYDMTADG---FSL 410 Query: 438 GKKRRIINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 KR + ++ I++ + R+ + S M+ + + Sbjct: 411 DDKRTPVKENDIPDIIERFKHLDKEIDRKKTEKSFMVGKKDIVANDYDLSINRYKEIEYK 470 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + I + + L LK +++ Sbjct: 471 PVEYPPTKDIIAEIEKLDKEANDALQELKALLKD 504 >gi|255690851|ref|ZP_05414526.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] gi|260623483|gb|EEX46354.1| type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] Length = 505 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 84/461 (18%), Positives = 163/461 (35%), Gaps = 71/461 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + A E T + S I E + + L Sbjct: 33 LFFLK-VYDAQEETWEYKSRREKKEFKSIIPEELRWRN-----WAVDNADGEALTGDALL 86 Query: 98 NNLESYI---------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + + K I ++ FS ++ LL ++ I+ D Sbjct: 87 EFVNARLFPTLKALPVNEDTPRGKTIVKEI-FSDLNQYMKNGILLRQVVNVIDEIDFS-D 144 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 +IYE +++ S + A +F TPR + +L +P + + Sbjct: 145 VEDRHTFGDIYEGILKDLQSAGN--AGEFYTPRALTDFMVEIL----------NPQLGES 192 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLES 266 D T GTGGFLT A+NH+ GQE +P + + + +L+ +E Sbjct: 193 FGDFTSGTGGFLTSALNHLYKQVKTTNDVKLFQTAVIGQEWKPLPYLLSITNLLVHDIE- 251 Query: 267 DPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + NI +L D + + NPP+G + +V+ + Sbjct: 252 ------APNIIHCDSLGTRVGDFKECDKVNVIAMNPPYGGST---EASVKNNFPSDM--- 299 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + S+ + LF++ + +L+ GRAA+++ LF + I+ LL+ Sbjct: 300 ------RSSETADLFMVLIMYRLK----ANGRAAVIVPDGFLF--GVDGAKLAIKTKLLK 347 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG---- 438 + + I+ LP +F T+IAT + +N + E+ T + +G Sbjct: 348 DFNLHTIIRLPGSIFSPYTSIATNILFFNNERVEDAPDGY-STKETWFYRLDMPDGYKHF 406 Query: 439 KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473 K + + + + I + + R+ + SR + Sbjct: 407 SKTKPMKLEHCQPIKEWWNDRKEIVSQDGNEKSRCFSVQDL 447 >gi|260592886|ref|ZP_05858344.1| type I restriction-modification system, M subunit [Prevotella veroralis F0319] gi|260535175|gb|EEX17792.1| type I restriction-modification system, M subunit [Prevotella veroralis F0319] Length = 508 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 85/447 (19%), Positives = 159/447 (35%), Gaps = 73/447 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95 L+ + E T Y A + + + E + Sbjct: 33 MFFLK-VYDTQEETWE-----YKASKERTTFESIIPEKLRWRNWAIDEKDGDAMTGDALL 86 Query: 96 --TRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 + L + K +FED + ++ LL ++ + IE Sbjct: 87 SFINDKLFPTLKGLEVTRETPRSKAIVKEVFEDLN-----QYMKNGILLRQVVNVINEIE 141 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 D + +IYE +++ S + A +F TPR + L SP Sbjct: 142 F-DDATDRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------SPV 188 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + T+ D T GTGGFLT A+N++ + G E +P + + + +L+ Sbjct: 189 LGETVGDFTSGTGGFLTSALNYLQKQVKTTDDRRLFQKAVIGHEWKPLPYLLSITNLLLH 248 Query: 263 RLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +E S NI+ +L D G + + NPP+G + + Sbjct: 249 DVE-------SPNIRHCDSLGTKMSDFKEGDKVNVIAMNPPYGGSTDAASKSNFPMEF-- 299 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + S+ + LF++ + +L+ GRAA+++ LF + I++ Sbjct: 300 ----------RSSETADLFMVLIMYRLK----ANGRAAVIVPDGFLF--GTDGAKLAIKQ 343 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 +L + + I+ LP +F T+IAT + +N + E + N T + EG Sbjct: 344 KMLRDFNLHTIIRLPGSIFAPYTSIATNILFFNNER-AEGADEGFSTNKTWFYRLDMPEG 402 Query: 439 ----KKRRIINDDQRRQILDIYVSREN 461 K + + + + I D + R+ Sbjct: 403 YKHFSKTKSMRLEHCQPICDWWNDRKE 429 >gi|325685548|gb|EGD27637.1| type I restriction-modification system DNA-methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 491 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 73/405 (18%), Positives = 140/405 (34%), Gaps = 57/405 (14%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 K F ++ LL ++ + D + ++IYE ++++ S Sbjct: 106 IKQAIVKDAFIDANNYMKNGVLLRQVINVIDEQDFT-DPQDRHMFNDIYEGILKQLQSAG 164 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TPR + L P + + D CGTGGFL +N + + Sbjct: 165 NS--GEFYTPRALTDFIAETL----------QPKLGEKMADFACGTGGFLISTLNVLKEQ 212 Query: 231 GS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KD 285 + G E + + + + V +L+ + + +I G++L + Sbjct: 213 IKSVEDQEKYNNSVFGIEKKGQPYILAVTNLLLHDV-------SNPDIVHGNSLEKKVDE 265 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 +F + NPPFG S+ + LF+ + + Sbjct: 266 YTEKDKFDIIMMNPPFGGSELPVIKQNFPTDLQ------------SSETADLFMALIMYR 313 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 L+ GGR ++L LF + +++ LL + + I+ LPT +F T+IA Sbjct: 314 LKE----GGRVGLILPDGFLF--GDDGSKLSLKKRLLTDFNLHTIIRLPTSIFAPYTSIA 367 Query: 405 TYLWILSNRKTEERRGKVQLINAT-------------DLWTSIRNEGKKRRIINDDQRRQ 451 T + K E+ +L + + +R +R+ I D Sbjct: 368 TNILFFDKTKPTEKTWFYRLDMPEGYKHFSKTRPMKLEHFDPVREWWNERQEIQDKDGNY 427 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 Y ++E + LD F + +VL P ++ Sbjct: 428 KSRAYTAKEIEENGYSLDLCGFPTKVEEVLPPEKLMAKYTAEREE 472 >gi|303253792|ref|ZP_07339927.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248452|ref|ZP_07530472.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647376|gb|EFL77597.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855020|gb|EFM87203.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 489 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 76/433 (17%), Positives = 159/433 (36%), Gaps = 53/433 (12%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + A E + + Y + + +++ K + L + Sbjct: 34 LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91 Query: 99 NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ I++ + + I F ++ LL ++ I + Sbjct: 92 ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE++++ + + A +F TPR V ++ P + + D CGTG Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A+ + +G E + H +C+ +L+ ++ + N Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250 Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + L KD +F L NPP+G + F L + S Sbjct: 251 VHHDNALEKPVKDYTDSDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR AIVL LF + + I++ L+ + ++ Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKVAIKQKLMTEMNLHTVIR 352 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T+I T + N + + +L D+ +N K + + + + Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKDTWFYRL----DMPEGYKNF-SKTKPMKLEHFNE 407 Query: 452 ILDIYVSRENGKF 464 +++ + +R+ + Sbjct: 408 VMEWWHNRQAIEI 420 >gi|257451972|ref|ZP_05617271.1| type I restriction-modification system DNA methylase [Fusobacterium sp. 3_1_5R] gi|317058521|ref|ZP_07923006.1| type I restriction-modification system DNA methylase [Fusobacterium sp. 3_1_5R] gi|313684197|gb|EFS21032.1| type I restriction-modification system DNA methylase [Fusobacterium sp. 3_1_5R] Length = 256 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 30/265 (11%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300 GQE+ + M + + + + +I++G TL L ++ F +SN P Sbjct: 14 FFGQEINMTNFNLARMNMFLHNVNYN-----NFSIKRGDTLLNPLHNEEKPFDAIVSNRP 68 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 + KW D D RF P L S F+MH + L GRAAI Sbjct: 69 YSIKWVGDADPT-----LINDERFAPAGKLAPKSYADYAFIMHSLSYLSSK----GRAAI 119 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V + A E IR++L++N+ ++ ++ LP +LFF T+IAT + +++ KTE Sbjct: 120 VCFPGIFYRKGA---ERTIRKYLVDNNFVDCVIQLPDNLFFGTSIATCILVMAKNKTE-- 174 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 +V I+A+ + N I+ + I++ + +RE + +R + + I Sbjct: 175 -NRVLFIDASKEFKKETN----NNILEEKNINTIIEEFRNREEKEDTREIIDIKVLNQEI 229 Query: 479 --KVLRPLRMSFILDKTGLARLEAD 501 V + + ++ + +LE + Sbjct: 230 EETVRKIDSLRASIN-EIIKKLEEE 253 >gi|109947644|ref|YP_664872.1| type I restriction enzyme M protein [Helicobacter acinonychis str. Sheeba] gi|109714865|emb|CAJ99873.1| type I restriction enzyme M protein [Helicobacter acinonychis str. Sheeba] Length = 543 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 165/485 (34%), Gaps = 75/485 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77 ++ +I L + L E T ++ S K+ Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDVTEEEKEDFFLTLSDKKLPK 90 Query: 78 YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA------ 130 S+ + + N L++ + S N A+F T L ++ Sbjct: 91 LSYDELLNHLFDKHFNDNDLHIKLDAIFNNISSNNAALFNTISTDKTTIALFESISQHIN 150 Query: 131 ---------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 +L KNF+ + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTKVLLDKLKNFNFKNAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P + +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLVNE--------PVKSKKIYDPSAGTGTLLIALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + KN +G+TL+ + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKDYKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + F G+P +D S LF H + L Sbjct: 310 VSNPPFKLDFSNEHATISNNKSD-----FSLGVPNIPKNDKSKMPIYTLFFQHCLSMLNP 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G AIV+ + F ++I R L++ L+ ++ +P+ +F T + Sbjct: 365 KSKG----AIVVPTG--FISAKSGVANKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVI 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 +E +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FFQKTPSE---NEVILIDASKLGEEYTENKNKKTRLRTSDMDLILETFKNKTQKSDFCAV 475 Query: 468 LDYRT 472 + + Sbjct: 476 VSFDE 480 >gi|165976839|ref|YP_001652432.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876940|gb|ABY69988.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 489 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 76/433 (17%), Positives = 159/433 (36%), Gaps = 53/433 (12%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + A E + + Y + + +++ K + L + Sbjct: 34 LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91 Query: 99 NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ I++ + + I F ++ LL ++ I + Sbjct: 92 ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE++++ + + A +F TPR V ++ P + + D CGTG Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197 Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A+ + +G E + H +C+ +L+ ++ + N Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250 Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + L KD +F L NPP+G + F L + S Sbjct: 251 VHHDNALEKPVKDYTENDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR AIVL LF + + I++ L+ + ++ Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKMAIKQKLMSEMNLHTVIR 352 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T+I T + N + + +L D+ +N K + + + + Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPQGYKNF-SKTKPMKLEHFNE 407 Query: 452 ILDIYVSRENGKF 464 +++ + +R+ + Sbjct: 408 VMEWWYNRQAIEI 420 >gi|194098760|ref|YP_002001822.1| hypothetical protein NGK_1197 [Neisseria gonorrhoeae NCCP11945] gi|239999053|ref|ZP_04718977.1| hypothetical protein Ngon3_06190 [Neisseria gonorrhoeae 35/02] gi|268594897|ref|ZP_06129064.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02] gi|193934050|gb|ACF29874.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|268548286|gb|EEZ43704.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02] gi|317164346|gb|ADV07887.1| hypothetical protein NGTW08_0919 [Neisseria gonorrhoeae TCDC-NG08107] Length = 533 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 89/501 (17%), Positives = 188/501 (37%), Gaps = 61/501 (12%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT SL + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118 Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164 + + F + G + +G + I+E+LI+ Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S ++ TP V + +L+ + S +YDP+ G+G L + Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 235 HVIGE--------DKCMIYTQDISQKSSNLLR-----LNLSLNNLVHSLNNVVQGNTILS 281 Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336 K+F + +SNPPF + +D +E + + RF G+P M Sbjct: 282 PAHKDASGCLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338 Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ +V+ Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 +P+++F T + + + KV LI+A+ L I ++ +++ ++ ++I Sbjct: 393 MPSNIFATTGTNVSILFIDK----VNKDKVVLIDASGLGEKISINDNQKTVLSHEEEQKI 448 Query: 453 LDIYVSRENGK-FSRMLDYRT 472 + ++ + FS ++ Y Sbjct: 449 CHTFTHKQAVEDFSVVVGYDE 469 >gi|325680372|ref|ZP_08159929.1| hypothetical protein CUS_4297 [Ruminococcus albus 8] gi|324107932|gb|EGC02191.1| hypothetical protein CUS_4297 [Ruminococcus albus 8] Length = 216 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 9/195 (4%) Query: 486 MSFILDKTGLARLE--ADITWRKLSPLH-----QSFWLDILKPMMQQIYPYGWAESFVKE 538 +S + D +A LE ++T ++L L + + I++ + I + Sbjct: 24 LSSLYDPAKVAELENSEELTGKELKKLENFQNNKPVYDAIIEALNNSIDDKIYLSVKEFM 83 Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598 + + T K + + D A+ D G I D + E V + ES Sbjct: 84 PVLTKILST--ATTDKKLLDKIADGLSVMDKSAEIQRDKKGNIIYDKETKDTEIVKFDES 141 Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658 I+DY REV PHVPDA K + R G EI F R+FY+YQ + ++++ Sbjct: 142 IEDYMAREVLPHVPDAQWFFEEDLSKKSPVIRTGAEIPFTRYFYKYQQPKPSEELEQRFM 201 Query: 659 GVEAQIATLLEEMAT 673 +E ++ + + Sbjct: 202 ELEKSVSERIARLFG 216 >gi|254481842|ref|ZP_05095085.1| N-6 DNA Methylase family protein [marine gamma proteobacterium HTCC2148] gi|214037971|gb|EEB78635.1| N-6 DNA Methylase family protein [marine gamma proteobacterium HTCC2148] Length = 521 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 87/529 (16%), Positives = 182/529 (34%), Gaps = 99/529 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 F + RL E + E+ E + S L + Sbjct: 34 FLMYARLLDMNETSDEKRAERSGKTFNRRFTDEQQHLRWQNFRHIESADELLRVVRDELF 93 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 ++ S +F +F + + ++K LL K + + L + Sbjct: 94 PFFKTTSGEGS-----LFAEFMKDAQLM-IQKPALLRKAIDMVNDLPLS----QGDTKGD 143 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ ++ P + DP CGT Sbjct: 144 LYEYLLSKLTTAG--INGQFRTPRHIIRAMVDMM----------DPKATDRICDPACGTA 191 Query: 218 GFLTDAMNHVAD------------------------------CGSHHKIPPILVPHGQEL 247 GFL+ + + H + + HG + Sbjct: 192 GFLSTTYEFMLEKYSSKDGTIREMVVDENGEEQEQVIYTGDLLADHREHVDRDMFHGFDF 251 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPF 301 + + +++ + +I TLS+ + F L+NPPF Sbjct: 252 DATMLRIAAMNLVMHGV-------TEPDIHYQDTLSQGFIERFPQSAREGFDLVLANPPF 304 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 K D++ V+ E K +LF+ + L++ GGRAA+++ Sbjct: 305 --KGSLDEEDVDPEILR---------TVKTKKTELLFIALILRMLKV----GGRAAVIVP 349 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 LF + ++R+ ++E++ +EAIV+LP+ +F ++T + I + + Sbjct: 350 DGVLF--GSSKAHQQLRKSMIEDNQLEAIVSLPSGVFKPYAGVSTAVMIFTKG---GQTD 404 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 +V + + KR ++ + + D+ +S + G + Sbjct: 405 RVWFYDLQADG---FSLDDKRTPLSGEGSDDLPDLVEQWAE--YSHL---AAVGKSVEQW 456 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW-----LDILKPMMQ 524 +F+++KT +A + D++ ++ + L+ILK +M+ Sbjct: 457 NDKTAKAFLVEKTEIASNKYDLSIKRYKEVPYEKEDYEPPLEILKRLME 505 >gi|325287952|ref|YP_004263742.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489] gi|324323406|gb|ADY30871.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489] Length = 499 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 84/452 (18%), Positives = 162/452 (35%), Gaps = 91/452 (20%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NT 96 L+ L E ++ AF K + + + L N+ Sbjct: 34 LFLKFLND-YEDNKAD-----EAFLEGTDYNYVLRKDLRWHQWACPKDENGKLDVKRANS 87 Query: 97 RNNLESYIA--------SFSDNAKA----------IFEDFDFSSTIARLEKAGLLYKICK 138 ++L Y+ +F IFE D R+ L ++ Sbjct: 88 GDDLIEYVNNTLFPYLKAFKSTTNDPKTLTYKIGAIFEYLD-----NRIASGHTLREVLD 142 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 ++ + +S +YE+L++ GS+ + +F TPR ++ Sbjct: 143 IIDALDFQ-SSDELFELSQVYENLLKSMGSDGG-NSGEFYTPRAIIKAMVE--------- 191 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-------CGSHHKIPPILVPHGQELEPET 251 + T+YD G+GGFL +A + + + GQE Sbjct: 192 -TTDIKVGDTIYDGAVGSGGFLVEAFDFLTAGDKKEKLSAKDWETIQNDTFFGQEKTSLG 250 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKD 308 + + + M++ +E S N+ +G+TL++ D R L+NPPFG K +K Sbjct: 251 YVMGMMNMILHGIE-------SPNVYKGNTLTQNIRDYQEKDRHDVILANPPFGGKEKKQ 303 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 P S+ +LF+ H L+L GRAAIV+ LF Sbjct: 304 IQQNF---------------PVESNATEILFMQHFMKMLKLE----GRAAIVVPEGVLF- 343 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426 + + +++++ LLEN + IV+LP+ +F + + T + + + + Sbjct: 344 -QTNNAFTKVKQTLLENFNVHTIVSLPSGVFLPYSGVKTNIIYFDRKGA---TSDIWYYD 399 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T + K + I + ++ + ++ + Sbjct: 400 VTPPYKLT-----KNKPIAYEHIKEFVHLFHN 426 >gi|308184243|ref|YP_003928376.1| type I restriction enzyme M protein [Helicobacter pylori SJM180] gi|308060163|gb|ADO02059.1| type I restriction enzyme M protein [Helicobacter pylori SJM180] Length = 543 Score = 154 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 84/544 (15%), Positives = 182/544 (33%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68 ++ +I L + L E + E+ F + ID Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFLITLIDKRLPK 90 Query: 69 --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121 + + +N ++ L + +N + S + I FE + Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R +L KNF + + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL+ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLVSE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ L R +G+TL+ + + + Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHSKDHKGKMDFI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSP 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AIV+ + F E++I R L++ L+ +V +P+ +F T + Sbjct: 365 K----GKGAIVVPTG--FISAKSGVENKIVRHLVDERLVYGVVCMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 + + +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTKKSDFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L Q+ +IL+ Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEAISQEEFENLMQQYSSELTSLFNESQNLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|198277094|ref|ZP_03209625.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135] gi|198269592|gb|EDY93862.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135] Length = 502 Score = 154 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 165/454 (36%), Gaps = 61/454 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ + E T EKY + ++ + K G + + S Sbjct: 33 MFFLK-VYDTQEETWEWKDEKYKSIIPEDLRWRNWAIDKKDGKALTGEALLSFVNEKLFP 91 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 T NL I + + AK+I ++ F+ ++ LL ++ + IE D Sbjct: 92 TLKNL--PIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF-DDADDRHTF 147 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +IYE +++ S + A +F TPR + +L P + T D T G Sbjct: 148 GDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETFGDFTSG 195 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TGGFLT A+ H+ GQE +P + + + +L+ +E + Sbjct: 196 TGGFLTSALKHMGRNIGSAADGEKLQNAVVGQEWKPLPYLLSITNLLLHDIE-------A 248 Query: 274 KNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 NI +L D + NPP+G +D+V+ + Sbjct: 249 PNITNCDSLGTNVTDFKESDKVDVIGMNPPYGGST---EDSVKSNFPVQY---------R 296 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 S+ + LF+ + +L+ GGR +++ LF + ++ LL + I Sbjct: 297 SSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENLLRKFNLHTI 350 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIIN 445 + LP +F T+IAT + +N + E T + EG K + + Sbjct: 351 IRLPGSIFSPYTSIATNILFFNNEEAEGCEEG-FKTKETWFYRLDMPEGYKHFSKTKPMK 409 Query: 446 DDQRRQILDIYVSREN------GKFSRMLDYRTF 473 + I + + R+ G+ SR+ + Sbjct: 410 VEHTLPIQEWWKDRKEIISDEVGEKSRVFTAQQL 443 >gi|317012278|gb|ADU82886.1| type I restriction enzyme M protein [Helicobacter pylori Lithuania75] Length = 543 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 85/549 (15%), Positives = 181/549 (32%), Gaps = 92/549 (16%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 ++ +I L + L E + + D + + F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIRDYKDLNEEEKEDFFLTLND 85 Query: 87 S----------LSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA- 130 LS L + +N L++ S N +F T L ++ Sbjct: 86 KRLPKLAYDELLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTTSTDKTTIALFESI 145 Query: 131 --------------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173 +L K F+ + + + I+E+L++ + + Sbjct: 146 SQYINEESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGK 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL++ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTKSVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ + KN +G+TL + Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLINPYHSKDYHG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 + Y +SNPPF + + + + + + F G+P +D S LF H Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNNND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AI++ + F E++I R L++ L+ +V +P+ +F T Sbjct: 360 NMLSDK----GKGAIIVPTG--FISAKSGIENKIIRHLVDERLVYGVVCMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462 + + +V LI+A+ L K+ + IL+ + ++ Sbjct: 414 NVSIIFFQKTPSA---NEVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTPKA 470 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFW 515 F ++ + + + +++ E + L QS Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530 Query: 516 LDILKPMMQ 524 +IL+ + Sbjct: 531 QEILETLKG 539 >gi|300702437|ref|YP_003744037.1| type I restriction enzyme (hsdm) [Ralstonia solanacearum CFBP2957] gi|299070098|emb|CBJ41385.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum CFBP2957] Length = 481 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 109/312 (34%), Gaps = 50/312 (16%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 L LL K+ + I L V +Y+ L+ R F TPR +V Sbjct: 119 TLPTPALLDKVVQQLDAIPL----HRRDVRGAVYDALLGRIPQAG--QGGQFHTPRHIVR 172 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPP 238 AL P TL DP GTGGFL A ++ Sbjct: 173 FMVAL----------TRPAPSDTLCDPAAGTGGFLAAAGEYLRREHPGLLHDTQQAAHFH 222 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297 + HG E++ + +L+ +E N++ L+ D + L+ Sbjct: 223 HGMFHGYEIDRTMLRIGSMNLLLHGVEG-------PNLRDHDALAPTDTNEAGAYSLVLA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 +PPF + + H+ + +LFL + L GGRAA Sbjct: 276 HPPFTGDVDHGSVDPDLLHRV-----------RTRKAELLFLARCLHLLRP----GGRAA 320 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 +++ LF +G +RR L+EN +E ++ LP +F I T + + + T Sbjct: 321 VIVPDGVLF--GSGIAHRTLRRMLVENHQLEGVIKLPAGVFRPYAGIGTAILLFTRTDTG 378 Query: 417 ERRGKVQLINAT 428 G V + Sbjct: 379 -GTGHVWFYDLR 389 >gi|329115887|ref|ZP_08244604.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020] gi|326906292|gb|EGE53206.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020] Length = 202 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 29/229 (12%) Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G+G + + ++ + + HGQ+L T + +++ ++ + Sbjct: 1 MGSGSLMLNIRRYLINPN-------QVHYHGQKLNTTTFNLARMNLILHVVDKERM---- 49 Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 N+ G TL D + + + + + NPP+ KW + RFG L Sbjct: 50 -NLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPK 103 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S FL+H L+ G IVL LF G A E IR+ LLE I+A++ Sbjct: 104 SKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 156 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LP ++FF T+I + + L ++ V I+A+ WT+++ K Sbjct: 157 GLPANIFFGTSIPSTVINLKKNRSRR---DVLFIDASQDWTNVKYLDTK 202 >gi|315225317|ref|ZP_07867133.1| type I restriction-modification system DNA-methyltransferase [Capnocytophaga ochracea F0287] gi|314944726|gb|EFS96759.1| type I restriction-modification system DNA-methyltransferase [Capnocytophaga ochracea F0287] Length = 499 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 85/464 (18%), Positives = 163/464 (35%), Gaps = 80/464 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSN----------IDLESFVKVAGYSFYNTSEY- 86 L+ + E + Y +F D + A F N + + Sbjct: 33 MLFLK-IYDVKEEDWEFNEDSYQSFIPEECRWRSWATDKGDGNALTADALLDFVNNTLFP 91 Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 +L +L T + S I +F F ++ ++ LL ++ + Sbjct: 92 TLKSLEVT-PDTPIHSSI---------VFTTFQDANQY--MKDGVLLRQVVNVIDQLNFS 139 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 D IYE +++ + + A +F TPR + ++ P + Sbjct: 140 -DYEESHAFGEIYEAILKEM--QSAGSAGEFYTPRALTDFMAEII----------EPQIG 186 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRL 264 + D CGTGGF+T +N + + + +G E + + +CV +L+ + Sbjct: 187 EKMADFACGTGGFITSWLNTLDKKATTAEAKEAWAQSIYGIEKKQFPYMLCVTNLLLHNI 246 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + + + ++L+KD +F L NPP+G + D Sbjct: 247 D-------APAVVHDNSLTKDVLNYTDDDKFDVVLMNPPYGGSEKNDIKQHFPSDL---- 295 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 S+ + LF++ + +L+ GRAA++L LF A + + I+ L Sbjct: 296 --------SSSETADLFMVLIMYRLKQ----NGRAAVILPDGFLF--GADNAKFAIKERL 341 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-- 438 L + I+ LP +F T+IAT + N E + + T + EG Sbjct: 342 LRKFNLHTIIRLPGSVFSPYTSIATNILFFDNV-QAEGAEEGFCTHKTWFYRLDMPEGYK 400 Query: 439 --KKRRIINDDQRRQILDIYVSREN-------GKFSRMLDYRTF 473 K + + + I D + +R + SR+ + Sbjct: 401 HFSKTKPMQAVHCQPIKDWWHNRVEIVSEDGKDEKSRVFTAQEL 444 >gi|294668323|ref|ZP_06733426.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309641|gb|EFE50884.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 457 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 91/481 (18%), Positives = 179/481 (37%), Gaps = 65/481 (13%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT +L + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQHFTEQTKALIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58 Query: 58 KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109 + ++++ + +K Y + + L + FS Sbjct: 59 EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAQNAELFSV 118 Query: 110 NAKA-----IFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + +FE + R + L FS + I+E+L Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEVIFAQKFDFFA--TIFEYL 176 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I+ + S ++ TP V + +L+ +YDP+ G+G L + Sbjct: 177 IKDYNSNSGGKYAEYYTPHAVARIMADILVPEGV----RGKIRSVDVYDPSAGSGTLLMN 232 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + + + Q++ ++ + L + N+ QG+T+ Sbjct: 233 VAHAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTI 279 Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-- 335 K+F + +SNPPF + +D +E E RF G+PKI Sbjct: 280 LSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTD 336 Query: 336 -----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ + Sbjct: 337 KMEIYQLFIQHILFSLKEK----GKAAIVLPTG--FITAQSGIDKKIREYLVENKMLAGV 390 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 V++P+++F T + + + KV LI+A+ L I+ +GK ++ + Q+ Sbjct: 391 VSMPSNIFATTGTNVSILFIDK----ANKDKVVLIDASGLGEKIK-DGKNQKPYSPAQKS 445 Query: 451 Q 451 + Sbjct: 446 K 446 >gi|15645091|ref|NP_207261.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 26695] gi|2313567|gb|AAD07525.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 26695] Length = 487 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 72/485 (14%), Positives = 163/485 (33%), Gaps = 75/485 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE--------------------PTRSAVREKYLAFGGSN 66 ++ +I L + L E + Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNKEEKEEFFITLTDKRLPK 90 Query: 67 IDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121 + + + +N ++ L + +N + S + I FE + Sbjct: 91 LAYDDLLNYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDKTTIALFESISQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R +L K F+ + + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLINE--------PTRNVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + +N +G+TL+ + + Y Sbjct: 255 SCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLRNAIEGNTLTNPYHSKDFKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P ++ S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNNKSKMPIYTLFFQHCLNMLSN 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AI++ + F E++I R L++ L+ +V +P+ +F T + Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIIRHLVDERLVYGVVCMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 + + +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRPSDIDLILETFQNKTKKSDFCAL 475 Query: 468 LDYRT 472 + + Sbjct: 476 VSFDE 480 >gi|255658632|ref|ZP_05404041.1| type I restriction-modification system, M subunit [Mitsuokella multacida DSM 20544] gi|260849006|gb|EEX69013.1| type I restriction-modification system, M subunit [Mitsuokella multacida DSM 20544] Length = 490 Score = 153 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 67/348 (19%), Positives = 130/348 (37%), Gaps = 49/348 (14%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F T ++ LL ++ I+L + +IYE +++ + + A +F T Sbjct: 114 FEETNQYMKDGVLLRQVINVIDDIDL-ESYDNMHALGDIYETILKEL--QSAGRAGEFYT 170 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIP 237 PR V + P + + D CGTGGFL + + + Sbjct: 171 PRAVTDFMADRI----------EPHLGERMADFACGTGGFLVSWLRELEKQIAAPDDRAL 220 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHY 294 +G E + + + + +L+ ++ + +I G++L D +F Sbjct: 221 WNHSVYGIEKKQFPYMLAITNLLLHGVD-------NPDIDHGNSLLHDVLDYTEKDKFDK 273 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L NPP+G +KD + + S+ + LF+ + +L+ GG Sbjct: 274 ILMNPPYGGSEKKDVMSHFPDDLAD------------SETADLFMSVILYRLKQ----GG 317 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 RAA+VL LF + + I++ L+ + IV LP +F T+I T + Sbjct: 318 RAAVVLPDGFLF--GTDNTKVNIKKKLMAECDLHTIVRLPGSVFAPYTSITTNILFFDRT 375 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 E K+ D+ ++ K + + + + + R+ Sbjct: 376 HPTE---KIWFY-RLDMPEGYKHF-SKTKPMRLEHFDPVKAWWDDRQE 418 >gi|119356950|ref|YP_911594.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] gi|119354299|gb|ABL65170.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] Length = 553 Score = 153 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 81/556 (14%), Positives = 179/556 (32%), Gaps = 96/556 (17%) Query: 35 ILPFTLLRRLECALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSF-YNTSEYS--- 87 I ++R++ + + A E + + + + SF Y + + Sbjct: 34 ITYLLFMKRMDDQ-DQEKQASAEWAGETYTSKFKGVWIPQEYRGKSNSFNYAIDKSTLRW 92 Query: 88 --LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143 + + ++++ + + + F + + + K LL + K I Sbjct: 93 SEFKHMQAEEMLTHVQTKVFPYLKDLNGAESQFSHHMKNAVFIIPKPSLLVEAVKTVDEI 152 Query: 144 ELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + + ++YE L+ + F TPR ++ + L+ Sbjct: 153 FEVMEKDSNEKGQAFQDIQGDVYEFLLSEIA--SAGKNGQFRTPRHIIKMMADLV----- 205 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------ADC 230 P + T+ DP CGTGGFL A ++ A Sbjct: 206 -----EPKLGHTIADPACGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSAGL 260 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 K G +++ + + +++ ++ I TLSK Sbjct: 261 TEQAKNILGRTLFGYDIDSTMVRLALMNLMMHGID-------EPEIDYKDTLSKSFTEES 313 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + ++NPPF K+ F K +LF+ ++ L+ Sbjct: 314 CYDIIMANPPFTGSI----------DKSDINESFTLSTTKT---ELLFVENIYRLLKK-- 358 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GG A +++ LF +G +R+ L+E ++A++ +P+ +F ++T + + Sbjct: 359 --GGTACVIVPQGVLF--GSGGAFKALRKLLVERCDLKAVITMPSGVFKPYAGVSTSILL 414 Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + T+ +V + S+ ++ K+ D I++ Y R + Sbjct: 415 FTKVWGPLDKVTKPATEQVWFYDMQSDGYSLDDKRSKQDGFGD--LLDIVEKYKQRS-VE 471 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWLDILK 520 + F R ++ L + E + L L + +I + Sbjct: 472 HDTDRTRKFFFVPRSEIESEGGYDLSLSRYKTDVFEEVVYESPSVILGKLIAAEVGEIDE 531 Query: 521 PMMQQIYPYGWAESFV 536 + I E Sbjct: 532 TELANIQSGIVRELLE 547 >gi|99078516|ref|YP_611774.1| N-6 DNA methylase [Ruegeria sp. TM1040] gi|99035654|gb|ABF62512.1| Type I restriction enzyme EcoEI M protein [Ruegeria sp. TM1040] Length = 524 Score = 153 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 68/438 (15%), Positives = 147/438 (33%), Gaps = 75/438 (17%) Query: 35 ILPFTLLRRLECAL--EPTRSAVR-EKYL-----------AFGGSNIDLESFVKVAGYSF 80 I ++RL+ E ++ + + D E+ + Sbjct: 32 ITYLLFIKRLDEIHTREEAKANMLGSEMERRIFPEGTFTYKVSDDPKDDETIERPYD--- 88 Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK---IC 137 + L + R ++ + + E + ++ ++ A L + + Sbjct: 89 ----DLRWQRLINFENREKMKLMDQHVFPFMRTMAE--EGTAFATHMKDARLGFSSPALL 142 Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + ++YE+++ + + F TPR ++ L L+ Sbjct: 143 DKVMRLLDVIQMDDRDTKGDVYEYMLGKIA--SAGQNGQFRTPRHIIELMVRLM------ 194 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPE 250 +P T+ DP GT GFL A + + + + HG + +P Sbjct: 195 ----APTPKDTICDPAAGTCGFLVTAGEFLRETHPEMLRNPEQRQHFHNSMFHGFDFDPT 250 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDK 309 + M++ +E + ++ +L+++ + L+NPPF + D Sbjct: 251 MLRIGSMNMVLHGVE-------NADVAYRDSLAEEHGADTGTYSLILANPPFAGSLDYDA 303 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 A + + + K +LFL + GGRAA+V+ LF Sbjct: 304 TAKDLQ-----------KVVKTKKTELLFLALFLRLMRT----GGRAAVVVPEGVLF--G 346 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428 + +IRR ++E+ ++AI+ LP+ +F ++T + I + V + Sbjct: 347 SSKAHKDIRRIIVEDQKLDAIIKLPSGVFRPYAGVSTAIMIFTKT-ESGGTDNVWFYDME 405 Query: 429 DLWTSIRNEGKKRRIIND 446 + KR + Sbjct: 406 ADGL---SLDDKRTDLLP 420 >gi|227487583|ref|ZP_03917899.1| type I site-specific deoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227092401|gb|EEI27713.1| type I site-specific deoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] Length = 533 Score = 153 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 62/426 (14%), Positives = 136/426 (31%), Gaps = 68/426 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96 L+ L+ +++ + D E + L L Sbjct: 35 LLFLKHLD--------KQQDEIEKWRLLGQDREDIFPAGAIEAGVPLRWRDLLALKDKKR 86 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVPD 152 E+++ F + F + + R ++ L + + +E Sbjct: 87 VEAFENHVFPFLTAQEDYPYKSPFGNFLKRAQFQIDNPATLASVMQRIDDLEFTNK---- 142 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ ++YE+++ + ++ F TP ++ L L+ P + DP Sbjct: 143 DMLGDLYEYVLSKLATQG--TNGQFRTPTHIIDLMVKLI----------QPKPTEKIIDP 190 Query: 213 TCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 GT GFL A + D G + + + + + + Sbjct: 191 AAGTAGFLVGANEWIKDHHKSDLRDERIRNKFKEEGLTGHDSDATMVRLAAMNLFLHGFD 250 Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + NI +L + F L+NPPF D +++++E + Sbjct: 251 -------NPNISYQDSLQPLENTPTGVFDVVLANPPFSGSV--DANSIDQELTTLFTTKK 301 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 +LF+ L GGRAA+++ LF+ +R+ L+++ Sbjct: 302 T---------ELLFVARFLTLLR----LGGRAAVIVPEGVLFSS--TKAHKALRKELVDH 346 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 ++A++ LP+ F + ++T + + + V + KR Sbjct: 347 QSLDAVIKLPSGTFKPYS-GVSTAILCFTRA-DDAATDSVWFYEVRADGY---SLDDKRT 401 Query: 443 IINDDQ 448 + D+ Sbjct: 402 PLLDEN 407 >gi|307250669|ref|ZP_07532606.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857277|gb|EFM89396.1| Type I restriction-modification system M subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 489 Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 76/433 (17%), Positives = 163/433 (37%), Gaps = 53/433 (12%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + A E + + Y + + + +++ K + L + + Sbjct: 34 LFLK-IYDAKEQEWELINDDYQSILPNFLRWQNWAKDNK-DGKAMTGDELLNFVNNDLFP 91 Query: 99 NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ I++ + + I F ++ LL ++ I + Sbjct: 92 TLKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE++++ + + A +F TPR V ++ +P + + D CGTG Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAQMI----------APKLGERIADFACGTG 197 Query: 218 GFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT A+ + + +G E + H +C+ +L+ ++ + N Sbjct: 198 GFLTSALKVLEKQIQSVSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250 Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + L KD +F L NPP+G + F L + S Sbjct: 251 VHHDNALEKPVKDYTDSDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR AIVL LF + + I++ L+ + ++ Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKVAIKQKLMTEMNLHTVIR 352 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T+I T + N + + +L D+ +N K + + + + Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPEGYKNF-SKTKPMKLEHFNE 407 Query: 452 ILDIYVSRENGKF 464 +++ + +R+ + Sbjct: 408 VMEWWHNRQAIEI 420 >gi|308061791|gb|ADO03679.1| type I restriction enzyme M protein [Helicobacter pylori Cuz20] Length = 543 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 84/544 (15%), Positives = 183/544 (33%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68 ++ +I L + L E + E+ F + ID Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFMTLIDKRLPK 90 Query: 69 --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDFD--FS 121 + + +N ++ L + +N + S + I FE + Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNTELFNTKSTDETNIALFESISQCIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R +L KNF + + + I+E+L++ + + + ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIARIIAKLLINE--------PTKSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKDLKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AI++ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 K +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L QS +IL+ Sbjct: 476 VSFNEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|188527247|ref|YP_001909934.1| type I restriction enzyme M protein [Helicobacter pylori Shi470] gi|188143487|gb|ACD47904.1| type I restriction enzyme M protein [Helicobacter pylori Shi470] Length = 543 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 85/544 (15%), Positives = 182/544 (33%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68 ++ +I L + L E + E+ F + ID Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFLITLIDKRLPK 90 Query: 69 --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121 + + +N ++ L + +N + S + I FE + Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R +L KNF + + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKDLKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 K +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L QS +IL+ Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|160914344|ref|ZP_02076563.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991] gi|158433817|gb|EDP12106.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991] Length = 494 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 84/544 (15%), Positives = 173/544 (31%), Gaps = 63/544 (11%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGK-----VILPFTLLRRLECALEPTRSAVREKYLAF 62 ++L+ F+ + + G I L+ + A E + Y++ Sbjct: 1 MSNLSGFVKSIRDIMRN--DAGINGDAQRIEQIAWMLFLK-VYDAKEQDWEMDEDDYISI 57 Query: 63 GGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 ++ G T + NLE + + K F Sbjct: 58 IPDQFKWSNWAHDDGSGKAITGDELLDFVNIELFPALKNLE--VNKETP-IKKSIVKTTF 114 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 ++ LL ++ ++L D IYE +++ + + + +F TP Sbjct: 115 EDANNYMKDGVLLRQVINVIDKLDLG-DYEESHAFGEIYESILKEL--QSAGSSGEFYTP 171 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--CGSHHKIPP 238 R V ++ P + T+ D CGTGGFLT + + + + + Sbjct: 172 RAVTDFMAKMI----------EPKIGETMADFACGTGGFLTSWIKELENKIQTNEDRRKF 221 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYC 295 +G E + + +C+ ML+ ++ I+ ++L D +F Sbjct: 222 DSSIYGIEKKQFPYMLCITNMLLHGIDI-------PRIEHDNSLLYDVLDYTDDDKFDVI 274 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L NPP+G + D S+ + LF+ + +L+ GR Sbjct: 275 LMNPPYGGNEKSDVKNHFPSDLA------------SSETADLFMSVIMYRLKE----NGR 318 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414 A++L LF + + I++ LL + IV +P +F T+I T + Sbjct: 319 VAVILPDGFLF--GTDNAKVSIKKKLLNEFNLHTIVRMPHSVFSPYTSITTNILFFDKTG 376 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 + +L D+ +N K + + + + + +RE D Sbjct: 377 KTKETWFYRL----DMPEGYKNF-SKTKPMKLEHFDPAIKWWNNREEISI-DGFDKAKKY 430 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + + + + K + + ++ QI + Sbjct: 431 SKAELEEKNYNLDLCGYPHEEEEILPPKDLIKEYQEKRKSLNADIDRILGQISEILGFDF 490 Query: 535 FVKE 538 +E Sbjct: 491 EEEE 494 >gi|289644883|ref|ZP_06476931.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata] gi|289505312|gb|EFD26363.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata] Length = 564 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 112/301 (37%), Gaps = 35/301 (11%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + +F TP V + LL P + DP CG+G Sbjct: 218 QFLLEQLAAVQGRRGTEFFTPPSVTRVIMELL----------DPRPDARICDPCCGSGEL 267 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L A H V HG L+ ++ + + L +D + ++ Sbjct: 268 LAAAGTRARS--RRHSTESAQVLHGYALDQQSWRLAQLTAALHGLPADLGEYPVEPLRLH 325 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 R+ NPPF D D + H + G P + + +L Sbjct: 326 H------QRTTRYDVVAMNPPFNMSGWSDGDPAHRPH-------WRYGPPPRHNANFAWL 372 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + A L + GG A +++ S E IR ++E+ ++E +VALP+ LF Sbjct: 373 QYAALLL----DDGGSAVVIMPHSAATTDNP--AEVTIRTNMIEDGVMECVVALPSRLFR 426 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+ LW+L + + R V ++AT + T I + RI+ DD +I Y Sbjct: 427 ETSAPATLWVLRRP-SRDSRRDVLFVDATAVGTVIDRD---YRILTDDDVARITGAYQDW 482 Query: 460 E 460 + Sbjct: 483 K 483 >gi|225022499|ref|ZP_03711691.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii ATCC 33806] gi|224944738|gb|EEG25947.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii ATCC 33806] Length = 500 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 138/428 (32%), Gaps = 73/428 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GS 93 +R+L+ R ++ G D E + L Sbjct: 10 LLFIRQLD-----ERQNELDQKKLLGVPVHDEEIIFTTEQ------EDLRWKNLMQIGDP 58 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 T + + + F F + L+K + + +++ + Sbjct: 59 TELHETMATRVFPFLKTMGTGTLAVLFRDASFGISSPSTLWKTMELINDLDIKNRDIT-- 116 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++YE+++ + + F TP+ ++ L L+ +P + + DP Sbjct: 117 --GDLYEYMLSKLATSG--TNGQFRTPQHIIDLLVELM----------APKLGERIIDPA 162 Query: 214 CGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 CGT GFL +A + + G + + + + E Sbjct: 163 CGTAGFLINASEWMKRTYREDLYNTNERERFYRDTFTGYDFDRSMVRIAAMNSYMHGFE- 221 Query: 267 DPRRDLSKNIQQGSTLSK----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 NI +L + G + L+NPPF + ++ Sbjct: 222 ------KPNISYRDSLGEFPEMSGGGGDLYDVILANPPFSGSLDAERVDPVIR------- 268 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 L +LFL L++ GGRAA+++ LF + +R+ L+ Sbjct: 269 ----KLANTKKTELLFLARFLTLLKV----GGRAAVIVPEGVLF--GSTKAHKVLRKELV 318 Query: 383 ENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 EN ++A++ LP+ +F + ++T + + + +V + + R+ K Sbjct: 319 ENQKLDAVIKLPSGVFKPYS-GVSTAVLCFTKTDSG-GTDEVWFYD---MLADGRSLDDK 373 Query: 441 RRIINDDQ 448 R + + Sbjct: 374 RTPLLPEN 381 >gi|257058611|ref|YP_003136499.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802] gi|256588777|gb|ACU99663.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802] Length = 1005 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 71/444 (15%), Positives = 148/444 (33%), Gaps = 77/444 (17%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D V ++YE+L+ + F TPR ++ L ++ P Sbjct: 571 DEQNQDVKGDLYEYLLGKLNISG--RNGQFRTPRHIIRLMVEMV----------DPKPNE 618 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHK------------------------IPPILVPH 243 + D GT GFL ++ ++ + + + + Sbjct: 619 RIGDLAAGTCGFLVNSYQYILEKFTSPEILLDEMGNKHPIGDLLTPEESEFLEKEAFTAY 678 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 + + +++ ++ TLSK+ K L NPPF Sbjct: 679 DNDSGMTMLRIGSMNLMLHGIKYPRFFYQ-------DTLSKEFKDEKSLDVALMNPPF-- 729 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K + D+ + K +LFL + L GGR +++ Sbjct: 730 KGKMDEKDIN-----------PYLPTKCKKTELLFLYQILRVL----EMGGRCGVIVPDG 774 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 LF + +IR+ L+E + ++ +V++P+ +F ++T + + + ++ Sbjct: 775 VLF--GSSKQHQDIRQKLIEENRLDGVVSMPSGVFKPYAGVSTAILLFTKG---ATTDRI 829 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 + + + KR+ I ++ ILD + +R + FS + + L+ Sbjct: 830 WFYD---MEHDGFSLDDKRQPIEENDIPDILDCWRNRFDNGFSALRESMKAELSAK--LQ 884 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWL----DILKPMMQQIYPY-GWAESFVK 537 PL+ + + + RL + L + LK + ++I P G + Sbjct: 885 PLKEKRLQLQEEIHRLRFEDAIASEDEETPRQVLESAEETLKVLEEEIKPLQGQINRLSR 944 Query: 538 ESIKSNE-AKTLKVKASKSFIVAF 560 + + K K S S Sbjct: 945 QFWVDKQVVKGNKYDLSASRYRHI 968 >gi|297379660|gb|ADI34547.1| type I restriction enzyme M protein [Helicobacter pylori v225d] Length = 543 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 81/544 (14%), Positives = 178/544 (32%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81 ++ +I L + L E + + Y F + + + Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKNFNEEEKEDFFIILIDKRLPK 90 Query: 82 NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFE-------DFDFSSTI----- 124 + LS L + +N L+ S N +F + +I Sbjct: 91 LAHDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150 Query: 125 ARLEKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 ++A + + + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPSSIARIIAKLLVNE--------PTKSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLND 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G AIV+ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 KCKG----AIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 K +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FF---KKMPSVNEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + +++ E + L QS +IL+ Sbjct: 476 ASFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFEDLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|94995116|ref|YP_603214.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10750] gi|94548624|gb|ABF38670.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10750] Length = 267 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 30/223 (13%) Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDA 311 + M++ + ++++ TL D T + ++ L NPP+ KW Sbjct: 1 MARMNMMLHGV-----AIENQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGF 55 Query: 312 VEKEHKNGELGRFG-PG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + RF G L S FL+H L+ G AIVL LF G Sbjct: 56 LT-------DPRFSSYGVLAPKSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGA 104 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 A E +IR+ LLE I+ I+ LP+++F+ T+I T + IL +T + V I+A+ Sbjct: 105 A---EGKIRQKLLEQGAIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASK 158 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + GK + + D ++ILD Y SR+N L Sbjct: 159 EFDK----GKNQNTMTDSHIKKILDAYKSRDNSDKFSYLASFD 197 >gi|315222592|ref|ZP_07864481.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211] gi|315188278|gb|EFU22004.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211] Length = 548 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 23/222 (10%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 ++ L +++ L G +F + P +R+ + E Sbjct: 309 ENEETTSQKLFAHLYEACNILRGPINQDEFKDYVTPILFFKRISDVYDEETQEALEL--- 365 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN----AKAIF 115 S D E +SF L + + + + +F Sbjct: 366 ---SGGDEEFAAFDENHSFVIPEGCHWKDLRNASQDVGKIIVKAMNGIERANPGTLSGVF 422 Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 FD + + + L + ++ S +++ VM + YE+LI++F + A Sbjct: 423 SSFDDVTWTDKTKLTDERLKDLIEHMSSLKVGNKNYSADVMGDAYEYLIKKFADLSKKNA 482 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++ TPR +V L L+ P T+YDP CG Sbjct: 483 GEYYTPRTIVKLMVMLM----------DPKPGDTVYDPACGF 514 >gi|330978665|gb|EGH77946.1| N-6 DNA methylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 328 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 132/371 (35%), Gaps = 62/371 (16%) Query: 31 FGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87 +G + L L+ L + D G + Sbjct: 8 YGDYLEQLTYLLFLK-----LAHEYAQEPYSRDTHIPKGYDWAGLTSKVGEPLEAHYLAT 62 Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L LG S AIF F + I K L ++ S I L Sbjct: 63 LHKLGQQ-------------SGMLGAIF--FKAQNKIQDPAKLSRLVQLIDAESWISLGA 107 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D ++YE L+++ + GA + TPR ++ A + P ++ Sbjct: 108 D-----TKGDLYEGLLQKNAEDTKSGAGQYFTPRALIETIVACV----------RPEPMK 152 Query: 208 TLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + DP CGTGGF A N + + + HG E+ T +C+ + + Sbjct: 153 IIADPACGTGGFFLGAYNWLTRPGATLNKAQKEFLRDKTFHGNEIVSNTRRMCLMNLFLH 212 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK----WEKDKDAVEKEHKN 318 + D + + L + + Y L+NPPFGKK ++ +KE Sbjct: 213 NV---GELDGEPLVARSDALITE--PKLKVDYVLANPPFGKKSSMTISNEEGDEDKEALT 267 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 E F S+ + FL H+ + L++ G+AA+VL + LF G AG +IR Sbjct: 268 YERQDFWETT---SNKQLNFLQHIVSMLKVD----GKAAVVLPDNVLFEGGAG---EKIR 317 Query: 379 RWLLENDLIEA 389 R LL+N + Sbjct: 318 RKLLDNCDVHT 328 >gi|322379880|ref|ZP_08054167.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5] gi|321147715|gb|EFX42328.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5] Length = 303 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 100/299 (33%), Gaps = 45/299 (15%) Query: 3 EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVR 56 T + L IW A+ L G DF + +L L R L L + Sbjct: 11 NSTANRNHLFKAIWNIADKLRGAVDGWDFKQFVLGMILYRYLSENLANYINETEQKRDAS 70 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST--------LGSTNTRNNLESY---IA 105 Y +L + + FY L + L I Sbjct: 71 FNYAKLKDEKANLAKEMLLEEKGFYIPPSGLFENVIENLGPLLKAGKLNTTLNDIFKNIE 130 Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153 + S +N K +F D D +S +L K + ++ + + +++ Sbjct: 131 ASSLQSEAQENFKGLFADLDMNS--DKLGNGVKSKNENIARLLEGVASMQISHYQKNGID 188 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V + YE L+ + S + +F TP +V L T L++ ++ K +YDP Sbjct: 189 VFGDAYEFLMGMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKSINK--------VYDPC 240 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + GQE+ T+ +C A ML+ ++ D Sbjct: 241 CGSGSLLLQFAKILGVENIKQG------FFGQEINQTTYNLCRANMLLHNVDYDKFHIN 293 >gi|332829957|gb|EGK02585.1| hypothetical protein HMPREF9455_00835 [Dysgonomonas gadei ATCC BAA-286] Length = 478 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 85/495 (17%), Positives = 174/495 (35%), Gaps = 58/495 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNT 96 L+ ++ + E S I + + A S T E L + ST+ Sbjct: 34 MLFLKIIDD-----KDKELEILKDDYISVIPEKFQWRNWAANSEGITGEELLGFIDSTSH 88 Query: 97 RN-NLESYIASFSDNA---KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + L + + S +A F + ++ + K+ + I+ + Sbjct: 89 HDLGLFATLRCLSSKTNPKRAAIVKEVFDGSNNYMKSGFEMRKVINKLNEIDFNRSD-DK 147 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +IYE +++ ++ ++ TPR + L T + P + + DP Sbjct: 148 HIFGDIYESILQELRDAGNK--GEYYTPRAITQLMTQM----------TDPKLGEKILDP 195 Query: 213 TCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 GTGGFLT A+ H D ++ G EL+P + + + +++ ++ Sbjct: 196 AAGTGGFLTAAIEHKRDHYVKTVDNEATLQSTITGWELKPVAYVLGLTNLILHGIDIPDY 255 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 + + ++ +++ K + L+NPPFG D VE R Sbjct: 256 QYIDSLKKEYNSIDK----KDQVDVILANPPFGASIA---DGVETNFPAMYRCRESAD-- 306 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 LF++ + L+ GRAAIVL + S IR LL + + Sbjct: 307 -------LFVILMLQMLKPT----GRAAIVLPDGSITGEGVKS---RIREKLLTDCNLHT 352 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 IV LP FF ++T L + + K + I ++ Sbjct: 353 IVRLPQSTFFPATVSTNLLFFEKGAPTKEIWYY-----EHRLPEGQKSYSKTKPIKFEEF 407 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 + +++ + +R + + + + + + + S + + I K S Sbjct: 408 KPLIEWWNNRVENEVAWKVKVKDLNNWDLDI----KNSNTVTEDITLSTTDAILKLKESI 463 Query: 510 LHQSFWLDILKPMMQ 524 + +D L+ +++ Sbjct: 464 NKSNSIIDELENLLK 478 >gi|290474453|ref|YP_003467333.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii SS-2004] gi|289173766|emb|CBJ80546.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii SS-2004] Length = 534 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 94/549 (17%), Positives = 170/549 (30%), Gaps = 112/549 (20%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLG 92 R L+ + + E+ G + D G +F N S L Sbjct: 35 LMFARMLD-----MQEDMAERKANRTGKDFDRLFPNTPEGQLLRWKNFKNLSGKELHKHL 89 Query: 93 STNTRNNLESYIASFSDN---------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 N + + SD A A LE + + Sbjct: 90 KQNVFPYF-AKLGKKSDEQDGLGNDGSAIEALGHIGEYMQDADLEIKNE-SVLVSAVEMV 147 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + P V +IYE+L+ + + F TPR ++ L+ +P Sbjct: 148 DELP-LTQSDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMIELI----------NP 194 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILV 241 T+ DP CGT GFLT M ++ + + Sbjct: 195 QPTDTVCDPACGTAGFLTRIMEYLNRVHSSEFGILEDDDGNKHYTGDLLEPYRDHINKKM 254 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYC 295 G + + V M + + NI +LSK F Sbjct: 255 FWGFDFDTTMLRVSSMNMALHGVNG-------ANILYQDSLSKSIKENFPQQEENFFDVI 307 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L+NPPF E GL K +LF+ H+ L+ GGR Sbjct: 308 LANPPF--------KGSLDETNTNPD---VLGLVKTKKTELLFVAHILRALK----LGGR 352 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414 AA+++ LF + ++R+ L+EN+ +E IV+LP+ +F T ++T + + + Sbjct: 353 AAVIVPDGVLF--GSSKAHQQLRQELIENNQLEGIVSLPSGVFKPYTGVSTAILMFTKGG 410 Query: 415 TEERRGKVQLINA-TDLWTSIRNE----GKKRRIINDDQ---------------RRQILD 454 + E +V + TD ++ G+ + + + I Sbjct: 411 STE---RVWFYDLQTDSYSLDDKRTPLKGEGSNDLPEAIAKWKQYIALVERNALAKDINK 467 Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 + + F ++D + + + + ++ + + K Sbjct: 468 AFGDKTQKAF--VVDAKDIVDNKFDLSINRYKEVVYEEEAFEDPKTILNKLKTLESEIMA 525 Query: 515 WLDILKPMM 523 LD L+ M+ Sbjct: 526 DLDALEGML 534 >gi|332673287|gb|AEE70104.1| type I restriction enzyme M protein [Helicobacter pylori 83] Length = 487 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 79/490 (16%), Positives = 167/490 (34%), Gaps = 85/490 (17%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83 ++ +I L + L E + + D + F + F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNEEEKEDFFITLID 85 Query: 84 -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127 + LS L + +N L++ S N +F T L Sbjct: 86 KRLPKLAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNATSTDETTIALFESI 145 Query: 128 --------EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEG 173 ++A + + + + I+E+L++ + + + Sbjct: 146 SQYINEESKRANFTRALLNKLRNFDFKQAFLNLQNQQGYDFFAPIFEYLLKSYNNASGDT 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL++ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLVNE--------PTQNVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ + K +G+TL+ + + Sbjct: 252 --GTNSCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 R Y +SNPPF + + + + + F G+P +D S LF H Sbjct: 305 RMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T Sbjct: 360 NMLNNK----GKGAIVVPTG--FISAKSGIENKIVRHLVDKRLVYGVICMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462 + K +V LI+A+ L K+ + IL+ + ++ + Sbjct: 414 NVSVIFF---KKTPSVNEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKA 470 Query: 463 KFSRMLDYRT 472 F ++ + Sbjct: 471 DFCTLVSFDE 480 >gi|58616450|ref|YP_195579.1| Type I restriction-modification system (specificity subunit) [Azoarcus sp. EbN1] gi|56315912|emb|CAI10555.1| Type I restriction-modification system (specificity subunit) [Aromatoleum aromaticum EbN1] Length = 540 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 82/508 (16%), Positives = 167/508 (32%), Gaps = 112/508 (22%) Query: 22 LWGDFKHTDFGKVILP--------------FTLLRRLE---CALEPTRSAVREK-YLAFG 63 + + + F L A R+ V + Y + Sbjct: 7 MRRSIE--QIRDYLFGGGYPDPVSNAEQLSFLFFFYLVEGIDAENEARAKVLKTPYESLF 64 Query: 64 GSNIDLESFVKV--AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--- 118 S+ L + + G + + S + + L ++ +F F Sbjct: 65 KSSWTLRNPLNALAKGETTIPRDRFRWSVWATALSGEPLVRFLRD------EVFAFFTEM 118 Query: 119 ------DFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 +F +++ +L ++ G+ H D +++EH++R+ Sbjct: 119 AGNGAVNFMHGARLVIDEPTVLNQVVTLVDGL--HLDRADADTKGDLFEHVLRQIKQAG- 175 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--- 228 F TPR ++ ++ P + T+YDP GT GFL A NH+ Sbjct: 176 -ELGQFRTPRHIIRAIVEII----------DPKIGETIYDPAAGTAGFLVAAYNHIRLAN 224 Query: 229 ---------DCGSHHKIP--------------PILVPHGQELEPETHAVCVAGMLIRRLE 265 + + G +++P+ + + +R L Sbjct: 225 SSPAGIQSVELDGKMQTRGLGDKLSTAQLSALQSKTFFGNDVDPKMVRLATMNLTLRGLP 284 Query: 266 S------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + + N ++ + +H L+NPPF + DKD + + K G Sbjct: 285 NVHILLRNVLTTTLDNERKADLC----LPQEGYHVVLANPPFSGRV--DKDRIVDDVKIG 338 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + +LFL ++ + L GGR +++ LF + E+RR Sbjct: 339 T----------TTATELLFLKYMMDSLRP----GGRCGVIVPEGVLF--GSTGAHKELRR 382 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 L+EN+ +EA+++LP +F + + T + E V ++ + + + Sbjct: 383 QLIENNRVEAVMSLPGGVFQPYSGVKTSVLFFRKGGRTE---NVLFLHVDN--DGYKLDA 437 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSR 466 I D ++ Y RE + + Sbjct: 438 NHDTPIEADDLPGLVAAYRDREANREAW 465 >gi|189499173|ref|YP_001958643.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1] gi|189494614|gb|ACE03162.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1] Length = 775 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 79/461 (17%), Positives = 158/461 (34%), Gaps = 68/461 (14%) Query: 65 SNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 ++D + SF+ Y+ + L N + + +S+ + Sbjct: 40 DDMDQAAIKAGGSPSFFVDDLENYAWTRLMDQRIGN--QERMNLYSEALIKFSQAKQLPE 97 Query: 123 TIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + K+ L + F + D + N YE+L+ S+ A F Sbjct: 98 LFRGIFKSAFLPYRSPETLGLFLKEIDYFDYSHPEELGNAYEYLLSIMSSQG--DAGQFR 155 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231 TPR ++ ++ +P + DP CGTGGFL + H+ + Sbjct: 156 TPRHIIDFIVDVV----------NPTKADKVLDPACGTGGFLVSSYKHILEQHDGKDDPK 205 Query: 232 -------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + G +++P + M + + + I Q +LS Sbjct: 206 KKEKPLTPDERKKLMTNFEGYDIDPTMVRIAQVNMYLH-------QFKNPKIFQYDSLSS 258 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + +F L+NPPF + K F S +LF+ ++ N Sbjct: 259 EERWNDKFDVILANPPF-MSPKGGIKPHSK---------FSI---PSSRSEVLFVDYIMN 305 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403 L GRA I++ +F ++R+ L+E D + A+V+LP+ +F + + Sbjct: 306 HLRPK----GRAGIIVPEGIIFQSGT--AHKQLRKNLVE-DGLYAVVSLPSGVFAPYSGV 358 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 T + + +N + ++ + + G +R I+ + LDI G+ Sbjct: 359 KTSILLFNNE-LAKTSTEILFVKIE---QDGFDLGATKRPISKNDLPTALDILNKWNTGE 414 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 + + K+ + D+ +A + W Sbjct: 415 KVE--NKLAVYVEKSKIAENGDYNLSGDRYRVATDYTNAKW 453 >gi|159901787|ref|YP_001548032.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779] gi|159894826|gb|ABX07904.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779] Length = 571 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 85/432 (19%), Positives = 152/432 (35%), Gaps = 72/432 (16%) Query: 6 GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 + +L + +W+ + L G + + + LR ++ +E R Sbjct: 10 STNETLRSNMWRACDILRRDNNVGGVM---QYTEHLAWLLFLRFMD--MEEKRRVDLALL 64 Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-----SDNAKAI 114 + + F+ + E + + S A+ I Sbjct: 65 NEMPYHPVLHGDL----SWDFWASPEALERRSAPELIQFVRGRLLPGLATLTGSSLARTI 120 Query: 115 FEDFDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 F ST + L + + + I D+ +S YE L+ R Sbjct: 121 AGIFSDESTGDQNVVRAVPVCASGYNLKDVLEIINSIHFELDS-DLFTISLFYEDLLERM 179 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 SE + A +F TPR V+ L+ +P + T+YDP G+ GFL A Sbjct: 180 SSE-NRTAGEFHTPRAVIRFMVELM----------APQIGETVYDPAYGSAGFLVQAFLF 228 Query: 227 VADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL- 282 + + L G E + + + M++ + + + + +TL Sbjct: 229 MQPFARTIEEHTSLHEQTFFGIEKKALSALLGTMNMVLHGVN-------APKLLRANTLE 281 Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 S +G+R+ L+NPPFG F K + +LFL H Sbjct: 282 ESMQGDSGQRYDVVLTNPPFGGTEGAHIQQN-----------FAV---KANATELLFLQH 327 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 + KL+ PN RAAIV+ LF A +E+++ LL+ + A+ +LP F Sbjct: 328 IIKKLKRTPNA--RAAIVVPEGTLFRSGA---FAEVKQDLLQQFHLFAVFSLPPGTFAPY 382 Query: 401 TNIATYLWILSN 412 +++ T + L Sbjct: 383 SDVKTAILFLKR 394 >gi|289706682|ref|ZP_06503030.1| N-6 DNA Methylase [Micrococcus luteus SK58] gi|289556602|gb|EFD49945.1| N-6 DNA Methylase [Micrococcus luteus SK58] Length = 490 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 78/508 (15%), Positives = 162/508 (31%), Gaps = 76/508 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 I LRRL+ A + R + D + S+ + + Sbjct: 32 ITYLLFLRRLDEAQTQAEAKARRTNQPVETTIFDADHQHLRWHQLKNVASDELFARMDRE 91 Query: 95 ------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + ++++ + + F + A +L + L Sbjct: 92 VFPFLRRLGQQIGGEDSTYAHHMRD--ARF-------TIPNARMLATAVDLIDKLPLTN- 141 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++YE+L+ + + F TPR ++ L + +P Sbjct: 142 ---RDTTGDLYEYLLSKLSTAG--RNGQFRTPRHIIDLMVRM----------TAPTPEDV 186 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP CGT GFL A ++ + + HG + + + ML+ Sbjct: 187 IVDPACGTAGFLVGASEYLREEHPELFFDMNQRLHFNRRMFHGYDFDSTMLRIASMNMLM 246 Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +E S +I +L++ D G ++ L+NPPF + + + + + Sbjct: 247 HGVE-------SPDIAYRDSLAQGASDGDAG-KYSLILANPPFAGSLDAEGVSSDLQR-- 296 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + K + GGRAA+++ LF + ++R Sbjct: 297 ---------VVKTKKTE----LLFLALFLRLLQPGGRAAVIVPEGVLF--GSSKAHKDLR 341 Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L+E+ ++A+V LP +F ++T + N V + + Sbjct: 342 RMLVEDHHLQAVVKLPAGVFKPYAGVSTAILFFRNDGPGS-TDDVWFYDVRADG---FSL 397 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 KR + + ++ + + G+ R ++F + ++ + L Sbjct: 398 DDKRTPVEANDLPDLVQRWQNPA-GEKDRPRTAQSFLVPKADIVE---QGYDLSLNRYKE 453 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ 525 LE + PL L+ L + Sbjct: 454 LEIE-EVEHRDPLEILVDLEQLDAEIAA 480 >gi|268599116|ref|ZP_06133283.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11] gi|268583247|gb|EEZ47923.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11] Length = 359 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 66/325 (20%), Positives = 142/325 (43%), Gaps = 43/325 (13%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +LI+ + S ++ TP V + +L+ + S +YDP+ G+G L Sbjct: 1 YLIKDYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLL 56 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + + + + + + Q++ ++ + L + N+ QG+ Sbjct: 57 MNVAHVIGE--------DKCMIYTQDISQKSSNLLR-----LNLSLNNLVHSLNNVVQGN 103 Query: 281 TLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 T+ K+F + +SNPPF + +D +E + RF G+PKI Sbjct: 104 TILSPYHKDASDRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKD 160 Query: 336 -------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 LF+ H+ L+ G+AAIVL + F + +IR +L+EN ++ Sbjct: 161 KDKMEIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREYLVENKMLA 214 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 +V++P+++F T + + + KV LI+A+ L I++ ++ +++ ++ Sbjct: 215 GVVSMPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEE 270 Query: 449 RRQILDIYVSRENGK-FSRMLDYRT 472 ++I + + +++ + FS ++ Y Sbjct: 271 EQKICNTFTNKQAVEDFSVVVGYDE 295 >gi|194336531|ref|YP_002018325.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1] gi|194309008|gb|ACF43708.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1] Length = 553 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 80/556 (14%), Positives = 178/556 (32%), Gaps = 96/556 (17%) Query: 35 ILPFTLLRRLECALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSF-YNTSEYS--- 87 I ++R++ + + A E + + + + SF Y + + Sbjct: 34 ITYLLFMKRMDDQ-DQEKQASAEWAGEPYTSKFKGVWIPQEYRGKSNSFNYAIDKSTLRW 92 Query: 88 --LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143 + + ++++ + + + F + + + K LL + K I Sbjct: 93 SEFKHMQAEEMLTHVQTKVFPYLKDMNGAESQFSHHMKNAVFIIPKPSLLVEAVKTVDEI 152 Query: 144 ELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + + ++YE L+ + F TPR ++ + L+ Sbjct: 153 FEVMEKDSNEKGQAFQDIQGDVYEFLLSEIA--SAGKNGQFRTPRHIIKMMADLV----- 205 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------------C 230 P + T+ DP CGTGGFL A ++ Sbjct: 206 -----EPKLGHTIADPACGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSVGL 260 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 K G +++ + + +++ ++ I TLSK Sbjct: 261 TEQAKSILGKTLFGYDIDSTMVRLALMNLMMHGID-------EPEIDYKDTLSKSFTEES 313 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + ++NPPF K F K +LF+ ++ L+ Sbjct: 314 CYDIIMANPPFTGSI----------DKGDINESFTLSTTKT---ELLFVENIYRLLKK-- 358 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GG A +++ LF +G +R+ L++ ++A++ +P+ +F ++T + + Sbjct: 359 --GGTACVIVPQGVLF--GSGGAFKALRKLLVDRCDLKAVITMPSGVFKPYAGVSTSILL 414 Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + T+ V + S+ ++ K+ D I++ Y R + + Sbjct: 415 FTKVWGPLDKVTKPATEHVWFYDMQSDGYSLDDKRSKQEGFGD--LLDIVENY-KRRSVE 471 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWLDILK 520 + F RI++ L + E + L L + +I + Sbjct: 472 HDTDRTQKFFFVPRIEIEGEGGYDLSLSRYKTDVFEEVVYESPSVILDKLIAAEVGEIDE 531 Query: 521 PMMQQIYPYGWAESFV 536 + I E Sbjct: 532 AELTNIQSGIVRELLE 547 >gi|117920472|ref|YP_869664.1| N-6 DNA methylase [Shewanella sp. ANA-3] gi|117612804|gb|ABK48258.1| N-6 DNA methylase [Shewanella sp. ANA-3] Length = 513 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 81/504 (16%), Positives = 176/504 (34%), Gaps = 114/504 (22%) Query: 5 TGSAASLANFIWK------NAEDLWGDFKHTDFGKVI--LPFTLLRRLECALEPTRSAVR 56 TG S N +W+ A L VI + F + RL E R R Sbjct: 3 TGKLKSDINKLWEEFWTGGIANPL----------TVIEQITFLMYARLLDLHEQ-RDEKR 51 Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 K ++ + + F + + ++ L + ++ S +F Sbjct: 52 AKLRGIDFKRRFNDNQQHIRWHRFIHQDKDTMLKLVRDEVFPHFKNASGEGS-----LFG 106 Query: 117 DFDFSSTIARLEKAGLLYK---ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 +F ++ A + + + ++ + ++YE+L+ + + Sbjct: 107 EF--------MKDAQCMIQKPTLMESAVEMIDKLPLEDSDTKGDLYEYLLSKLTTAG--I 156 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-- 231 F TPR ++ +L P + + DP+CGT GFLT A ++ + Sbjct: 157 NGQFRTPRHIIRAMVEML----------DPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTS 206 Query: 232 ----------------------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 H + HG + + + +++ Sbjct: 207 PEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYVNTDMFHGFDFDATMLRIAAMNLVMHG 266 Query: 264 LESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + ++ TLS + + C++NPPF K ++++E Sbjct: 267 V-------TEPDVHYQDTLSGSFTERFPNQSKDAYTLCIANPPF-------KGSLDEEDV 312 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + + R + K +LF+ + L+ GG+ AI++ LF + + ++ Sbjct: 313 DPAILR----MVKTKKTELLFVAQILRLLK----NGGKTAIIVPDGVLF--GSSNAHQQL 362 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 R+ ++EN+ ++A+V+LP+ +F ++T + ++ R V + + Sbjct: 363 RQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKG---SRTDHVWFYDVQADGM---S 416 Query: 437 EGKKRRIINDDQRRQILDIYVSRE 460 KR I D+ ++ + +R+ Sbjct: 417 LDDKRTPIKDNDLPDLVAKFKARD 440 >gi|317051876|ref|YP_004112992.1| N-6 DNA methylase [Desulfurispirillum indicum S5] gi|316946960|gb|ADU66436.1| N-6 DNA methylase [Desulfurispirillum indicum S5] Length = 554 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 81/558 (14%), Positives = 182/558 (32%), Gaps = 99/558 (17%) Query: 35 ILPFTLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYS--- 87 I ++RL+ L+ + A E Y + + G Y + + Sbjct: 34 ITYLLFMKRLDE-LDQKKQADAEWTGEPYTSKFAGQWIPPEYRDKEGADNYAVDKRTLRW 92 Query: 88 --LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143 + + +++S + F + +F + + + K LL + K I Sbjct: 93 SEFKRMQAEEMLQHVQSKVFPFLKDMNGAESNFTHHMKNAVFIIPKPALLVEAVKTIDEI 152 Query: 144 ELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + ++YE L+ + F TPR ++ L L+ Sbjct: 153 FEIMEKDSQEKGQAFQDIQGDVYEMLLSEIATAGK--NGQFRTPRHIIKLMADLV----- 205 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------ADC 230 P + + DP CG+GGFL A ++ A Sbjct: 206 -----RPQLGHRIADPACGSGGFLLGAYQYIVTELAKKAGAKDLQSDEDGFVRTSVAAGL 260 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + G +++ + + +++ ++ NI TLSK Sbjct: 261 TEKAQAILQASLFGYDIDATMVRLGLMNLMMHGID-------EPNIDYKDTLSKSYLEEA 313 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + ++NPPF DK + + + +LF+ ++ L+ Sbjct: 314 EYDIVMANPPFTGSI--DKGDINENLSL-----------STTKTELLFVENIYRLLKK-- 358 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GG A +++ LF +G +R+ L+E ++A++ +P+ +F ++T + + Sbjct: 359 --GGTACVIVPQGVLF--GSGGAFKTLRQMLVERCDLKAVITMPSGVFKPYAGVSTAILL 414 Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + T+ V S+ ++ K+ D + I+ + +R N + Sbjct: 415 FTKVWGPKDKVTQPATEHVWFYEMQADGYSLDDKRSKQEGYGD--LQDIVAKFHAR-NPE 471 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILD-----KTGLARLEADITWRKLSPLHQSFWLDI 518 + F R ++ + ++ L + + D L L ++ + Sbjct: 472 TDIDRTAKWFCVSRSEIAD-EKNNYDLSLSRYKEDVFEDVVYDKPADILKRLIEAEVGEA 530 Query: 519 LKPMMQQIYPYGWAESFV 536 + ++ E Sbjct: 531 DDAQLAKVQSGIVRELLE 548 >gi|297520536|ref|ZP_06938922.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia coli OP50] Length = 304 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 66/357 (18%), Positives = 120/357 (33%), Gaps = 67/357 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63 + L +WK ++L + + L L+ + T +YL G Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPEG 53 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 DL+S + FY L LG+ N + +A+F++ + Sbjct: 54 YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94 Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + L ++ N ++ + ++YE L+++ +E GA + TPR Sbjct: 95 -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 ++ LL P + DP GT GFL +A +V + Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 G EL P T + + L+ +E + + I+ G+TL D + H Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 +NPPFG + + S+ + F+ H+ L Sbjct: 262 IVATNPPFGSAAGTNITRTL--------------VHPTSNKQLCFMQHVIETLHPGG 304 >gi|253991410|ref|YP_003042766.1| type I restriction enzyme, modification subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782860|emb|CAQ86025.1| type I restriction enzyme, modification subunit [Photorhabdus asymbiotica] Length = 544 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 70/450 (15%), Positives = 148/450 (32%), Gaps = 86/450 (19%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + F + S + + + + Sbjct: 42 DTQEQKDEKRKQITGIDFKPRFVPVQQEFRFSHYSNLGADEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + L ++YE+L+ + Sbjct: 102 EGEQI-TLLGNFMKDARLE-IIKPSLLTKAVDMIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETVCDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESVHSEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++ +E +I T+S+ + F+ L+NPPF Sbjct: 266 MNLIMHGVE-------EPDIHYQDTMSQSFSANFPQASKNAFNLILANPPFTGSL----- 313 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + K +LFL + L++ GGR+A ++ LF + Sbjct: 314 -----DEEDTDPTLLAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E++ +EA++ LP+ +F +AT + I + + +V + + Sbjct: 362 SKAHQSLRKILVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTNEVWFYDLQN 418 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + KR I D+ ++ + Sbjct: 419 DGY---SLDDKRHPIKDNDLPHLIASWKHY 445 >gi|315187185|gb|EFU20942.1| N-6 DNA methylase [Spirochaeta thermophila DSM 6578] Length = 552 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 95/563 (16%), Positives = 193/563 (34%), Gaps = 99/563 (17%) Query: 15 IWKNAEDLWGD-FKHTDFGKVILPFTLLRRLEC-ALEPTR-------SAVREKYLAFGGS 65 +W+ A D T+ + F L+ + ALE + Sbjct: 14 LWEIANVFRDDALHATERLETFSLFLFLKLWDEMALEQEEALGRSLNDEELAIPNKYRFH 73 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + + F ++ ++ TR ++ Y + + + + F T+ Sbjct: 74 KWASDPDGYAKQHGFEDSVDFCRRMFDDLATRKVVDQYGKDITFDVRRL-----FGGTVF 128 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPD--------RVMSNIYEHLIRRFGSEVSEGAEDF 177 RL + + + + L + + YE+L+++FG ++ ++ Sbjct: 129 RLRYTTTIRALVSKLNELNLREIMMRGVGEPGERYDIFGRAYEYLLQKFGQ--NKEFAEY 186 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234 TPR +V ++ P + T+YDP CGTGGF+ A V Sbjct: 187 FTPRHIVDRMVQII----------DPEIGETIYDPACGTGGFIVRAFEWVRAKIERKTIS 236 Query: 235 --------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-- 284 + G E P + + M++ +D S +Q +LS Sbjct: 237 AAEKERLLRNLKEKHLIGVEHVPIVFKLALMNMILH-------KDGSSLLQNDDSLSNKA 289 Query: 285 -DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D+ ++ L+NPPFG ++ E K E LF+ H+ Sbjct: 290 QDIHKN-KYDVILANPPFGPTKQERLAQFEYHIKLYEA---------------LFIQHMM 333 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRT 401 N L GGRAA+VL LF+ + + R+ L+E + A+++LP +F + Sbjct: 334 NALRP----GGRAAVVLKEGLLFDSKKML-RAICRK-LVEQFEVLAVISLPNGVFNPYS- 386 Query: 402 NIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKKRRII----NDDQRRQILDI 455 T + + + + R KV + + R+ G RR + D ++ + Sbjct: 387 GAKTSIVVFRKPLGRDDVRTSKVWFY---RVESDGRDLGATRRPLPDFETDGDLEHMVSL 443 Query: 456 Y----VSRENGKFSRMLDYRT---FGYRRI---KVLRPLRMSFILDKTGLARLEADITWR 505 + ++G +L F + + + + L +A+ Sbjct: 444 FPYTWRHEKDGGVRAILKADDLKQFESEKSWWATIEQIRATDYNLTAGRYCPHQAEAVEH 503 Query: 506 KLSPLHQSFWLDILKPMMQQIYP 528 + + + L++ + + + + Sbjct: 504 EKPEVLINRLLELEEEITKDLQD 526 >gi|304409997|ref|ZP_07391616.1| N-6 DNA methylase [Shewanella baltica OS183] gi|307302290|ref|ZP_07582048.1| N-6 DNA methylase [Shewanella baltica BA175] gi|304351406|gb|EFM15805.1| N-6 DNA methylase [Shewanella baltica OS183] gi|306914328|gb|EFN44749.1| N-6 DNA methylase [Shewanella baltica BA175] Length = 640 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 93/501 (18%), Positives = 159/501 (31%), Gaps = 129/501 (25%) Query: 6 GSAASLANFIWKNAEDLWGDFKHT--DFG---KVILPFTLLRRLECALEPTRSAVREKYL 60 S SL++F+ + + + + IL LR L+ + E+ Sbjct: 15 ASTQSLSSFVKSICDVMRRSNCASALQYVPELTWIL---FLR----ILDAQEAKAHEEAE 67 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIAS--FSDNAKA 113 G S + S Y + N + N + F + Sbjct: 68 VLGASFTPALN------------SPYRWRDWAAPFPKNDNEKENHPTTSEGKPFGWKRQE 115 Query: 114 IFED-----FDFSST--IARLEKAGL---------------------------------- 132 +F FDF + + L + Sbjct: 116 LFAAGDGKLFDFINKELLPHLHSLDVDPQTGLPNPAANRKQRIMGRTMTAVERVRVDSEA 175 Query: 133 -LYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L I I + D +S +YE L+ + G + F TPR+V+ Sbjct: 176 NLRDILDKVHEINIDHVDDQHFFTLSQVYEDLLLKMGE-KNSDGGQFFTPREVIRAMVHT 234 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------GSHHKIPPILVPHG 244 + P + +T+YDP CGTGGFL A H+A + G Sbjct: 235 V----------KPELGQTVYDPCCGTGGFLAIAYEHIARQLGQSPTSTDLDTLKHDTFFG 284 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLS 297 +E E + +A +++ ++ N+ G++L++ +F L+ Sbjct: 285 REKENLVFPIALANLVLHGID-------QPNLWHGNSLTRRATYAGLFEQAPTQFDVILT 337 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG K KD S +LF+ + +L G A Sbjct: 338 NPPFGGKEGKDAQKNFAFE--------------TSSTQVLFVQDILAELAPK----GTCA 379 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 IVL LF S E +R L++ + AI++LP +F + T L + K Sbjct: 380 IVLDEGLLFRTN-ESAFVETKRKLVDECDLWAILSLPGGVFSTAGAGVKTNLLFFTKGKK 438 Query: 416 EERRGKVQLINATDLWTSIRN 436 E K+ + + + + Sbjct: 439 TE---KIWYYDLSHVKVGKKT 456 >gi|229523506|ref|ZP_04412911.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae bv. albensis VL426] gi|229337087|gb|EEO02104.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio cholerae bv. albensis VL426] Length = 512 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 145/426 (34%), Gaps = 82/426 (19%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + + V +IYE+L+ + + F TPR ++ + +L Sbjct: 123 VLRAAVDMVNDLPLDKSDVKGDIYEYLLSKLS--SAGINGQFRTPRHIIDMMVEML---- 176 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-------------------- 235 + DP CGT GFL+ +M ++ + + Sbjct: 177 ------DVQPTDVICDPACGTAGFLSRSMEYLMRIHTSAESIYQDEDDNPVYTGDLLHEY 230 Query: 236 --IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTG 289 + G + + V ML+ + + NI +L+K Sbjct: 231 QDHINTKMFWGFDFDNTMLRVSAMNMLLHGV-------SAANITYQDSLNKSFLGQPQEE 283 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F L+NPPF K D+ +V + + K +LF+ + L+ Sbjct: 284 NFFDKILANPPF--KGSLDEQSVNPK---------VLSMVKTKKTELLFVALILRMLK-- 330 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408 GGR+A ++ LF + S ++R+ L++++ +EAI++LP+ +F ++T + Sbjct: 331 --LGGRSATIVPDGVLF--GSSSAHQDLRKTLIDHNQLEAIISLPSGVFKPYAGVSTGIL 386 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 I + + V + T + KR I D+ L + + L Sbjct: 387 IFTKGGS---TDNVLFYDMTADGY---SLDDKRNPIKDNDIPDALAKWKRYNALYQANDL 440 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP--------LHQSFWLDILK 520 + + +F++ + + D++ + L LK Sbjct: 441 QALKAEFGDKT-----QKAFMVSADDIKAQKYDLSINRYKEVVYQEESYEDPKVILAKLK 495 Query: 521 PMMQQI 526 + +I Sbjct: 496 ALENEI 501 >gi|227541296|ref|ZP_03971345.1| type I site-specific deoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51866] gi|227182847|gb|EEI63819.1| type I site-specific deoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51866] Length = 533 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 62/426 (14%), Positives = 137/426 (32%), Gaps = 68/426 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96 L+ L+ +++ + D E + L L Sbjct: 35 LLFLKHLD--------KQQDEIEKWRLLGQDREDIFPAGAIEAGVPLRWRDLLALKDKKR 86 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVPD 152 E+++ F + F + + R ++ L + + G+E Sbjct: 87 VEAFENHVFPFLTANEDYPYKSPFGNFLKRAQFQIDNPATLASVMQRIDGLEFTNK---- 142 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ ++YE+++ + ++ F TP ++ L L+ P + DP Sbjct: 143 DMLGDLYEYVLSKLATQG--TNGQFRTPTHIIDLMVKLI----------QPKPTEKIIDP 190 Query: 213 TCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 GT GFL A + D G + + + + + + Sbjct: 191 AAGTAGFLVGANEWIKDHHKSDLRDERIRNKFKEEGLTGHDSDATMVRLAAMNLFLHGFD 250 Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + +I +L + F L+NPPF D +++++E + Sbjct: 251 -------NPSISYQDSLQPLENTPTGVFDVVLANPPFSGSV--DANSIDQELTTLFTTKK 301 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 +LF+ L GGRAA+++ LF+ +R+ L+++ Sbjct: 302 T---------ELLFVARFLTLLR----LGGRAAVIVPEGVLFSS--TKAHKALRKELVDH 346 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 ++A++ LP+ F + ++T + + + V + KR Sbjct: 347 QSLDAVIKLPSGTFKPYS-GVSTAILCFTRA-DDAATDSVWFYEVRADGY---SLDDKRT 401 Query: 443 IINDDQ 448 + D+ Sbjct: 402 PLLDEN 407 >gi|158522735|ref|YP_001530605.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158511561|gb|ABW68528.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 554 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 90/557 (16%), Positives = 185/557 (33%), Gaps = 97/557 (17%) Query: 35 ILPFTLLRRLECALEPTRSA----VREKY-LAFGGSNIDLESFVKVAGY--SFYN---TS 84 I ++RL+ L+ + A EKY F G+ I E K F T Sbjct: 34 ITYLLFMKRLDE-LDQKKQADGEWAGEKYTSKFAGTWIPPEHRDKPEKEQKPFAVKRHTL 92 Query: 85 EYS-LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFS 141 +S + + ++++ + F + +F + + + K LL + K Sbjct: 93 RWSEFKRMQAEEMLQHVQTKVFPFLRDMNGAESNFTHHMKNAVFIIPKPALLVEAVKTID 152 Query: 142 GIELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 I + + ++YE L+ + F TPR ++ + L+ Sbjct: 153 EIFEIMEKDSQEKGQAFQDIQGDVYEMLLSEIA--SAGKNGQFRTPRHIIKMMAELV--- 207 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------A 228 P + + DP CGTGGFL A H+ A Sbjct: 208 -------QPQLGHRIADPACGTGGFLLGAYQHIVTQLAKKAGKKDLQPDEDGFVRTSVAA 260 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + +G +++ + + +++ ++ I TLSK Sbjct: 261 GLTEKAQAILQSSLYGYDIDSTMVRLGLMNLMMHGID-------EPQIDYKDTLSKGYLE 313 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + ++NPPF DK + + + +LF+ ++ L+ Sbjct: 314 EAEYDVVMANPPFTGSI--DKGDINENLTL-----------STTKTELLFVENIYRLLKK 360 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GG A +++ LF +G +R+ L+E ++A+V +P+ +F ++T + Sbjct: 361 ----GGTACVIVPQGVLF--GSGKAFKNLRQLLVERCELKAVVTMPSGVFKPYAGVSTAV 414 Query: 408 WILSNRKTEERRGKV-QLINATDLWTSIRNEG----KKRRIIN-DDQRRQILDIYVSREN 461 + + K + KV Q + + +G KR + + I+ Y +R N Sbjct: 415 LLFT--KAWGPKDKVTQPATEHVWFYEMAADGYSLDDKRTKLAGYGDLQDIITKYHAR-N 471 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + + F R + + ++ + + L L +S + Sbjct: 472 PETDTDRTQKGFVVPRADIEAKGYDLSLSRYKEDVFEEIQYEAPAKILDKLLKSEVGEAG 531 Query: 520 KPMMQQIYPYGWAESFV 536 + ++ E Sbjct: 532 DDDLAKVQRGIVRELLE 548 >gi|308179092|ref|YP_003918498.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] gi|307746555|emb|CBT77527.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] Length = 506 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 87/497 (17%), Positives = 175/497 (35%), Gaps = 69/497 (13%) Query: 35 ILPFTLLRRLEC--ALEPTRS----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 I L+RL+ ++ E + G + S+ + F N + + Sbjct: 32 ITYLLFLKRLDDNQIAAERKASRIGKPLENPVFPEGVDKFGRSYQDMRWSKFKNFDKSEM 91 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + L + SD + + + + K LL K I + Sbjct: 92 FAVFNESIFPFLREELTRQSDGSDSSYTH-HMKDARFTITKDHLLQKAVDLIDEIPMD-- 148 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++YE+++ + + F TPR ++ L A+ +P + Sbjct: 149 --DRDTKGDLYEYMLSKIATAG--TNGQFRTPRHIIELLVAM----------RNPQPMEA 194 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP GT GFL + ++ D HG + + + +L+ Sbjct: 195 ICDPASGTCGFLMASGEYLRDNNPELMFDPEQRAFFNNQQFHGFDFDSTMLRIGAMNLLL 254 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +E + I+ +L+ DL + +++ L+NPPF D + V KE Sbjct: 255 HGIE-------NPVIENRDSLA-DLHSADEEKYDVILANPPFAGSL--DSENVSKELLK- 303 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 K +LFL L+ GGRAA+++ LF + ++R+ Sbjct: 304 --------TVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKDLRK 349 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 L+E+ +EA+V LP+ +F ++T + + + V + T + Sbjct: 350 QLVEDQQLEAVVKLPSGVFKPYAGVSTAVLFFTRTNSG-GTENVWFYDVTADG---FSLD 405 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 KR + +L+ + + G+ S R + R SF++ K+ +A Sbjct: 406 DKRNPLESSDLPDVLERWKA-VRGELSEERAAAELE--RARTER----SFVVPKSEIAEN 458 Query: 499 EADITWRKLSPLHQSFW 515 D++ + + Sbjct: 459 GYDLSINRYKEIEYEEV 475 Score = 37.6 bits (86), Expect = 7.0, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Query: 632 GYEINFNRFF---YQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673 GY+++ NR+ Y+ R +I A+++ ++A IAT L E+ Sbjct: 459 GYDLSINRYKEIEYEEVEHRTPAEIIADIEQLDADIATGLAELKG 503 >gi|160914349|ref|ZP_02076568.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991] gi|158433822|gb|EDP12111.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991] Length = 435 Score = 150 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 71/434 (16%), Positives = 144/434 (33%), Gaps = 50/434 (11%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 K F ++ LL ++ ++L D IYE +++ + Sbjct: 46 IKKSIVKTTFEDANNYMKDGVLLRQVINVIDKLDLG-DYEESHAFGEIYESILKEL--QS 102 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD- 229 + + +F TPR V ++ P + T+ D CGTGGFLT + + + Sbjct: 103 AGSSGEFYTPRAVTDFMAKMI----------EPKIGETMADFACGTGGFLTSWIKELENK 152 Query: 230 -CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285 + + +G E + + +C+ ML+ ++ I+ ++L D Sbjct: 153 IQTNEDRRKFDSSIYGIEKKQFPYMLCITNMLLHGIDI-------PRIEHDNSLLYDVLD 205 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 +F L NPP+G + D S+ + LF+ + + Sbjct: 206 YTDDDKFDVILMNPPYGGNEKSDVKNHFPSDLA------------SSETADLFMSVIMYR 253 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 L+ GR A++L LF + + I++ LL + IV +P +F T+I Sbjct: 254 LKE----NGRVAVILPDGFLF--GTDNAKVSIKKKLLNEFNLHTIVRMPHSVFSPYTSIT 307 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 T + + +L D+ +N K + + + + + +RE Sbjct: 308 TNILFFDKTGKTKETWFYRL----DMPEGYKNF-SKTKPMKLEHFDPAIKWWNNREEISI 362 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 D + + + + K + + ++ Sbjct: 363 -DGFDKAKKYSKAELEEKNYNLDLCGYPHEEEEILPPKDLIKEYQEKRKSLNADIDRILG 421 Query: 525 QIYPYGWAESFVKE 538 QI + +E Sbjct: 422 QISEILGFDFEEEE 435 >gi|220932854|ref|YP_002509762.1| N-6 DNA methylase [Halothermothrix orenii H 168] gi|219994164|gb|ACL70767.1| N-6 DNA methylase [Halothermothrix orenii H 168] Length = 484 Score = 150 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 85/505 (16%), Positives = 173/505 (34%), Gaps = 73/505 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + +E+ + DL+ Y + N + + S++ Sbjct: 33 MLFLKIFDT---------KEQEEWAFEDDYDLKGPFVPEKYQWGNWAGVRKADRMSSDEL 83 Query: 98 NNLESYIASFSDNA--------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + N + I F + ++ LL+++ + I+ D Sbjct: 84 IEFVEELFKELKNLSVDEHTDRRKILVRDVFEDSNNYMKSGVLLWQVIDKINEIDFG-DY 142 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++IYE +++ S + A ++ TPR V L +P + + Sbjct: 143 KERHAFNDIYETILKDLQSAGN--AGEYYTPRAVTDFVIDRL----------NPQIGEKV 190 Query: 210 YDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 D CGTGGFL A+ H+ + HG E +P H +C M++ ++ Sbjct: 191 ADFACGTGGFLISALEHMKASKENLTTEESETIKNSLHGIEKKPMPHLLCCTNMILHDID 250 Query: 266 SDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 +I ++L+ +D K++ NPPFG +++ ++ Sbjct: 251 F-------PDILHQNSLATNVRDYPEEKKYDVIAMNPPFGG---TEEEGIKMNFPAEY-- 298 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 + S+ + LF+ + ++++ GGR IVL LF + + I++ LL Sbjct: 299 -------RTSETADLFMTLILHRIKK----GGRVGIVLPDGFLF--GNDNAKIVIKKKLL 345 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + IV LP +F T+I T L +V + K Sbjct: 346 NEFNLHTIVRLPNGVFAPYTDINTNLLFFDYN--GTGTEEVWYYEHQLPEGYKKYTKTKP 403 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 + + + Q + + RE +F+ + + R + F L+ Sbjct: 404 IRMEEFKAEQ--EWWDKREENEFAWKVSKEE------IIERDYNLDFKNRNVEEEDLDHP 455 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQI 526 K +I + ++ ++ Sbjct: 456 EVILKKYNEAVKEVEEIQEKIIAEL 480 >gi|284037968|ref|YP_003387898.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma linguale DSM 74] gi|283817261|gb|ADB39099.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma linguale DSM 74] Length = 502 Score = 150 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 150/393 (38%), Gaps = 68/393 (17%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90 L+ + L + + D E F + + + +L Sbjct: 35 MLFLKIFDDKDIEMELLADDYQSPIPTDCQWRNWAADNEGITGDELQQFVDLTLFPTLKN 94 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L + N + + + +FE + ++ + KIC + I+ + Sbjct: 95 LPVKD--GNRRALL------IREVFEGNN-----NYMKSGINIRKICNKLNEIDF-NSSE 140 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + ++YE +++ + + + +F TPR V T ++ +P + ++ Sbjct: 141 DRHLFGDLYEGILKEL--QSAGDSGEFYTPRAVTQFMTEMV----------NPRLGEIIF 188 Query: 211 DPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP CGTGGFL +A+ H+ ++ G E +P + + + +++ +E Sbjct: 189 DPACGTGGFLVNAIEHIRQREVNSVDDRLTLQKTIRGCEYKPLPYELALTNLILHDIEV- 247 Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 NI+ G +L ++ + R L+NPPFG NG G F Sbjct: 248 ------PNIEYGDSLGREYSSIRDRDRVDVILANPPFGGTVA-----------NGNEGNF 290 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + + + LFL+ + N L GRAA+VL L + +R+ LLE+ Sbjct: 291 PANF-RTRESADLFLVLIVNLLRT----NGRAALVLPDGSL---TGEGVKQRVRQKLLED 342 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415 + IV LP +F + T +AT L ++T Sbjct: 343 CDLHTIVRLPNSVFQPYAT-VATNLLFFEKKRT 374 >gi|172039949|ref|YP_001799663.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] gi|171851253|emb|CAQ04229.1| type I restriction-modification system, methyltransferase subunit [Corynebacterium urealyticum DSM 7109] Length = 524 Score = 150 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 111/332 (33%), Gaps = 55/332 (16%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 +E L ++ + +E + ++YE+++ + S F T ++ L Sbjct: 117 IENPATLLRVMEQVDALEFTNRDMS----GDLYEYMLSKLASSG--TNGQFRTTSHIIDL 170 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPI 239 L+ P + DP CGT GFL A + Sbjct: 171 MVELM----------RPAPKHRVIDPACGTAGFLVGAREWTRHHHADEFMDRRVSDWYTQ 220 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSN 298 G + + + M + E NI +L + + F L+N Sbjct: 221 RALTGFDFDSSMVRIAAMNMFMHGFE-------DPNISYRDSLQQVPEADREAFDIILAN 273 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF D+ +++ E N L +LFL L+ GGRAA+ Sbjct: 274 PPFAGSI--DESSLDPELAN---------LISSKRTELLFLARFLTLLKP----GGRAAV 318 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTE 416 ++ LF + EIR+ L++ ++A++ LP+ F + ++T + + Sbjct: 319 IVPEGVLF--GSTKAHREIRKHLIDEQRLDAVIKLPSGTFKPYS-GVSTAILCFTRT-DR 374 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 V T + KR + D Sbjct: 375 GSTDDVWFYEVTADGY---SLDDKRTPLLDAN 403 >gi|319951808|ref|YP_004163075.1| n-6 DNA methylase [Cellulophaga algicola DSM 14237] gi|319420468|gb|ADV47577.1| N-6 DNA methylase [Cellulophaga algicola DSM 14237] Length = 552 Score = 150 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 93/603 (15%), Positives = 187/603 (31%), Gaps = 126/603 (20%) Query: 1 MTEFTGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54 M + +L +W A L + I ++RL+ LE R Sbjct: 1 MLQNNSKLKALIVSLWNTFWSGGIANPL-TAIEQ------ITYLLFVKRLDE-LESKRER 52 Query: 55 VREKYLAFGGSNID-------LESFVKV-------AGYSFYNTS------------EYSL 88 E S D ES + YN ++S Sbjct: 53 DAEFTSEAYESKFDGEYTPWIDESLYRPKPEVTETEKARLYNKREKALTPRPKKELKWSF 112 Query: 89 -STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI-- 143 + + + + + + + F + + +EK LL + K I Sbjct: 113 FKAMPADDMLVHFRNNVFPHIKDLNDETSSFTKYMKNAVFIIEKPSLLVEAIKKVDEIFL 172 Query: 144 ELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 E+ D + ++YE L++ + F TPR ++ L L Sbjct: 173 EIAEDAKDGKQSFQDIQGDVYEMLLKEIATAGK--NGQFRTPRHLIKLLAEL-------- 222 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------------CGS 232 P + + DP CGTGGFL A ++ Sbjct: 223 --TEPKLGHKIADPACGTGGFLLGAYQYILSDLVRQKEPDLLVADEDGFERASISSVLDK 280 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 +K +G +++ + + +++ ++ + +I+ +LSK+ + Sbjct: 281 KNKQILNDSFYGFDIDTTMVRLGLMNLMMHGID-------NPHIEYKDSLSKNYNETGDY 333 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L+NPPF K D + G +LFL ++ L Sbjct: 334 DIVLANPPFTGKL----DKGDVNPDLGID---------TGSTELLFLARISKMLR----A 376 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411 GG+AA+++ LF G R LL+++ +EA+++LP F T + T + + + Sbjct: 377 GGKAAVIIPEGVLFGGSKAQ--KATREILLKDNQLEAVISLPAGAFKPYTGVKTAILVFT 434 Query: 412 NRKTEE---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 + + KV + + RR + ++ + Y +R+ ++ Sbjct: 435 KVEEDSKTWHTDKVWFYALENDGY---SLDDNRRKLEENPLPVVKSEYTARKTSEYPDR- 490 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 F + + L E + + +++ K ++ + Sbjct: 491 KNHFF----VPLAEIQENDLDLSYNRYKEYEYTEQTYEPPKEILAKLMEMEKGILADMQE 546 Query: 529 YGW 531 Sbjct: 547 LND 549 >gi|317177250|dbj|BAJ55039.1| Type I restriction enzyme M protein [Helicobacter pylori F16] Length = 543 Score = 150 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 84/552 (15%), Positives = 185/552 (33%), Gaps = 85/552 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83 ++ +I L + L E + + D + F + F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNEEEKEDFFITLID 85 Query: 84 -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFE--------------- 116 + LS L + +N L+ S N +F Sbjct: 86 KRLPKLAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDETTIALFESV 145 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173 + R +L KNF + + + I+E+L++ + + + Sbjct: 146 SQYINEESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGK 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL++ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ + K +G+TL+ + + Sbjct: 252 --GTDSCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 + Y +SNPPF + + + + + F G+P +D S LF H Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T Sbjct: 360 NMLSNK----GKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462 + +E+ V LI+A+ L K+ + IL+ + ++ + Sbjct: 414 NVSIIFFKKTPSEDG---VVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKA 470 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F ++ + + + + +++ E + ++ S S + + Sbjct: 471 DFCALVSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530 Query: 523 MQQIYPYGWAES 534 + + G Sbjct: 531 QEILETLGNLNY 542 >gi|217033265|ref|ZP_03438696.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10] gi|216944206|gb|EEC23631.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10] Length = 543 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 84/549 (15%), Positives = 189/549 (34%), Gaps = 76/549 (13%) Query: 27 KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNIDL---- 69 ++ +I L + L E + E+ F + ID Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFSEEEKEDFFLTLIDERLPK 90 Query: 70 ---ESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121 + + +N ++ L + +N + S + I FE + Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDETTIALFESISQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R +L KNF + + + I+E+L++ + + + ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNSYHSKECKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLNN 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ A+V+ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAMVVPTG--FISAKSGIENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSVI 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 +E +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FFKKTPSE---DEVILIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + + + +++ E + ++ S S + + + + Q+I Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDES-QSLQQEIL 534 Query: 528 PYGWAESFV 536 F Sbjct: 535 ETLKRVRFE 543 >gi|17548113|ref|NP_521515.1| type I restriction enzyme M protein [Ralstonia solanacearum GMI1000] gi|17430420|emb|CAD16893.1| probable typeIrestriction enzyme m protein [Ralstonia solanacearum GMI1000] Length = 481 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 91/446 (20%), Positives = 148/446 (33%), Gaps = 79/446 (17%) Query: 4 FTGSAASLANFIWK------NAEDLWGDFKHTDFGKVI--LP-FTLLRRLEC--ALEPTR 52 T L + IW A+ + ++I L L+RL+ L Sbjct: 2 MTADLQRLVDRIWDAFHTEGIADPV----------EIIEQLTCLLCLKRLDDLHVLARHL 51 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + + A G E + F S ++ + ST + A Sbjct: 52 ARRSRQPAASGARLPFREDQDDLRWSVFRTLSPQAMFDVVSTR-GIPFLQALGDNDPAAG 110 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 ED F L LL +I + I L V +YE L+ R ++ Sbjct: 111 RHMEDIRF-----TLTTPALLARIVQLLDAIPL----HRRDVRGAVYESLLGRIA--LTR 159 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 + F TPR +V L P TL DP GT GFL A ++ Sbjct: 160 RSGAFHTPRHIVRFMVEL----------TRPDPSDTLCDPAAGTCGFLAAAGEYLRREHP 209 Query: 233 HHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 HG E++ + +L+ +E ++ G L+ Sbjct: 210 GLLHDARQSAHFHHGMFHGHEIDRAMLRIGSMNLLLHGVEG-------AGLRHGDALAG- 261 Query: 286 LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + Y L++PPF V++ + +L R L + +LFL Sbjct: 262 AHADETGAYSLILTHPPFTGD-------VDRGGADPDLLR----LVRTRKTELLFLARCL 310 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TN 402 L GGRAA+++ LF +G +RR L+E+ +E ++ LP +F Sbjct: 311 RLLRP----GGRAAVIVPDGVLF--GSGIAHRTLRRMLVEDHRLEGVIKLPGGVFRPYAG 364 Query: 403 IATYLWILSNRKTEERRGKVQLINAT 428 I T + + + T G V + Sbjct: 365 IGTAILLFTRTDTG-GTGHVWFYDLR 389 >gi|227506257|ref|ZP_03936306.1| type I site-specific deoxyribonuclease [Corynebacterium striatum ATCC 6940] gi|227197158|gb|EEI77206.1| type I site-specific deoxyribonuclease [Corynebacterium striatum ATCC 6940] Length = 532 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 141/423 (33%), Gaps = 72/423 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NT 96 ++ L+ R +K A G + + L + Sbjct: 44 LLFIKDLD-----ERQVQIDKRRALGDPTATED-IFDASQQD------LRWRNLIEDRDI 91 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIA----RLEKAGLLYKICKNFSGIELHPDTVPD 152 + I K F +A +E L ++ + + Sbjct: 92 ARRKATIITKVFPFIKE-MGGTGFQEHMANASFEIESEATLSRVMELIDQLHFSNK---- 146 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE+++ + + F TP ++ L AL+ P + + DP Sbjct: 147 DMKGDLYEYMLDKLSTSG--TNGQFRTPSHIIELIVALM----------EPTPQQRIIDP 194 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLE 265 CGT GFL A + +A G + + + M + E Sbjct: 195 ACGTAGFLVAANDWIALHHREDLFNKETRTTFTDEGLTGFDFDKTMVRIAAMNMFMHGFE 254 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 NI +L K T + F L+NPPF DKDA++ + K+ Sbjct: 255 -------DPNISHHDSLQKLPTTFEDFDLVLANPPFAGSL--DKDAIDPKLKS------- 298 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 + +LF+ L+ GGRAA+++ LF + +R+ L+E+ Sbjct: 299 --VTTAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVEDQ 350 Query: 386 LIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 ++A++ LP+ +F + ++T + + + +V + T + KR Sbjct: 351 RLDAVIKLPSGVFKPYS-GVSTAVLCFTRTDSG-GTDEVWFYDVTADGY---SLDDKRTP 405 Query: 444 IND 446 + + Sbjct: 406 LLE 408 >gi|227834296|ref|YP_002836003.1| type I restriction enzyme M protein [Corynebacterium aurimucosum ATCC 700975] gi|227455312|gb|ACP34065.1| type I restriction enzyme M protein [Corynebacterium aurimucosum ATCC 700975] Length = 590 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 73/424 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NT 96 ++ L+ R +K A G + + L + Sbjct: 101 LLFIKDLD-----ERQVQIDKRRALGDPTATED-IFDASQQD------LRWRNLIEDRDI 148 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIA----RLEKAGLLYKICKNFSGIELHPDTVPD 152 + I K F +A +E L ++ + + Sbjct: 149 ARRKATIINKVFPFIKE-MGGTGFQEHMANASFEIESEATLSRVMELIDQLHFSNK---- 203 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE+++ + + F T ++ L AL+ P + + DP Sbjct: 204 DMKGDLYEYMLDKLSTSG--TNGQFRTTSHIIELLVALM----------EPTPQQRIIDP 251 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLE 265 CGT GFL A + +A G + + + M + E Sbjct: 252 ACGTAGFLVAANDWIAHHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFE 311 Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 NI +L + + F L+NPPF DKDAV+ + K+ Sbjct: 312 -------EPNISYRDSLQQLPTTFDEAFDLVLANPPFAGSL--DKDAVDPKLKS------ 356 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + +LF+ L+ GGRAA+++ LF + +R+ L+E+ Sbjct: 357 ---VTTAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVED 407 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 ++A++ LP+ +F + ++T + + + +V + T + KR Sbjct: 408 QRLDAVIKLPSGVFKPYS-GVSTAVLCFTRTDSG-GTDEVWFYDVTADGY---SLDDKRT 462 Query: 443 IIND 446 + D Sbjct: 463 PLLD 466 >gi|15611483|ref|NP_223134.1| Type I restriction enzyme modification subunit [Helicobacter pylori J99] gi|4154948|gb|AAD05994.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter pylori J99] Length = 543 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 68/469 (14%), Positives = 162/469 (34%), Gaps = 80/469 (17%) Query: 82 NTSEYSLSTLGSTNTR--NNLESYIA------SFSDNAKAIFEDFDFSSTIARLEKAGLL 133 N ++ + T ++ YI +F+ + ++F+F L+ Sbjct: 125 NAELFNTKSTDETTIALFESVSQYINEGSKRANFTRSLLDKLKNFNFKQAFLNLQN---- 180 Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + I+E+L++ + + ++ TP + + LL+ Sbjct: 181 ---------------QQGYDFFAPIFEYLLKDYNNNSGGTYAEYYTPLSIASIIAKLLV- 224 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 P +YDP+ GTG L + + + Q++ ++ Sbjct: 225 -------NKPTQSVKIYDPSAGTGTLLMALAHQI--------GTDSCTLYAQDISQKSLR 269 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKD 310 + +++ + ++ +G+TL+ + + + +SNPPF + + Sbjct: 270 MLKLNLIL-----NDLTHSLRHAIEGNTLTNPYHSKDHKGKMDFIVSNPPFKLDFSNEHA 324 Query: 311 AVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLELPPNGGGRAAIVLSSS 363 + + + F G+P +D S LF H N L G+ AI++ + Sbjct: 325 EISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSPK----GKGAIIVPTG 375 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 F E++I R L++ L+ ++ +P+ +F T + + + +V Sbjct: 376 --FISAKSGVENKIVRHLVDERLVYGVICMPSQVFANTGTNVSIIFFQKTPSAK---EVI 430 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLR 482 LI+A+ L K+ + IL+ + ++ F ++ + + + Sbjct: 431 LIDASKLGEEYTENKNKKTRLRPSDMDLILETFQNKAPKSDFCALVSFDEITEKNYSLNP 490 Query: 483 PLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILKPMMQ 524 + +++ E + L Q+ +IL+ + Sbjct: 491 GQYFTIEDTSETISQAEFENLMQQYSSELASLFDESQNLQQEILETLKG 539 >gi|208434384|ref|YP_002266050.1| type I restriction enzyme M protein [Helicobacter pylori G27] gi|208432313|gb|ACI27184.1| type I restriction enzyme M protein [Helicobacter pylori G27] Length = 537 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 78/494 (15%), Positives = 171/494 (34%), Gaps = 65/494 (13%) Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + A E + + F S + + +T + S S Sbjct: 84 KLAYDELLSYLFEKHFNDNDLYLKLDAIFNRISSNNAELFNTKSTDKTTIALFESISPYI 143 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGS 168 + +F+ + L+K KNF+ + + + I+E+L++ + + Sbjct: 144 NEESKRANFTRAL--LDK-------LKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNN 194 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 ++ TP + + LL+D P +YDP+ GTG L + + Sbjct: 195 AGGGKYAEYYTPLSIASIIAKLLIDE--------PTQNVKIYDPSAGTGTLLMALAHQI- 245 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + Q++ ++ + +++ L R +G+TL+ + Sbjct: 246 -------GTNSCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHS 293 Query: 289 GK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LF 338 + + + +SNPPF + + + + + F G+P +D S LF Sbjct: 294 KECHGKMDFIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLF 348 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 H N L G+ AI++ + F E++I R L++ L+ +V +P+ +F Sbjct: 349 FQHCLNMLSNK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVVCMPSQVF 402 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T + + + +V LI+A+ L K+ + IL+ + + Sbjct: 403 ANTGTNVSIIFFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRTSDIDLILETFHN 459 Query: 459 RE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPL 510 + F ++ + + + + +++ E + L Sbjct: 460 KTPKADFCALVSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDE 519 Query: 511 HQSFWLDILKPMMQ 524 QS +IL+ + Sbjct: 520 SQSLQQEILETLKG 533 >gi|207722056|ref|YP_002252494.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2] gi|206587230|emb|CAQ17814.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2] Length = 481 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 108/312 (34%), Gaps = 50/312 (16%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + LL K+ + I L V +Y+ L+ R F TPR +V Sbjct: 119 TMPTPALLAKVVQQLDAIPL----HRRDVRGAVYDALLGRIPLVG--QGGRFHTPRHIVR 172 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV 241 L P TL DP GTG FL A ++ + Sbjct: 173 FMVEL----------TRPDPSDTLCDPAAGTGSFLAAAGEYLRREHPGLLHDARQSVHFH 222 Query: 242 ---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297 HG E++ + +L+ +E +++ L+ D + L+ Sbjct: 223 HGMFHGYEIDRAMLRIGSMNLLLHGVEG-------PDLRDHDALAPTDANEAGAYSLVLA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 +PPF + + H+ + +LFL + L+ GGRAA Sbjct: 276 HPPFTGDVDHGSVDPDLLHRV-----------RTRKAELLFLARCLHLLKP----GGRAA 320 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 +++ LF +G +RR L+EN +E ++ LP +F I T + + + T Sbjct: 321 VIVPDGVLF--GSGLAHRTLRRMLVENHRLEGVIKLPAGVFRPYAGIGTAILLFTRTDTG 378 Query: 417 ERRGKVQLINAT 428 G V + Sbjct: 379 -GTGHVWFYDLR 389 >gi|83746140|ref|ZP_00943194.1| Type I restriction-modification system methylation subunit [Ralstonia solanacearum UW551] gi|207741830|ref|YP_002258222.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609] gi|83727106|gb|EAP74230.1| Type I restriction-modification system methylation subunit [Ralstonia solanacearum UW551] gi|206593214|emb|CAQ60141.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609] Length = 481 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 108/312 (34%), Gaps = 50/312 (16%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + LL K+ + I L V +Y+ L+ R F TPR +V Sbjct: 119 TMPTPALLAKVVQQLDAIPL----HRRDVRGAVYDALLGRIPLVG--QGGRFHTPRHIVR 172 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV 241 L P TL DP GTG FL A ++ + Sbjct: 173 FMVEL----------TRPDPSDTLCDPAAGTGSFLAAAGEYLRREHPGLLHDARQSVHFH 222 Query: 242 ---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297 HG E++ + +L+ +E +++ L+ D + L+ Sbjct: 223 HGMFHGYEIDRAMLRIGSMNLLLHGVEG-------PDLRDHDALAPTDANEAGAYSLVLA 275 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 +PPF + + H+ + +LFL + L+ GGRAA Sbjct: 276 HPPFTGDVDHGSVDPDLLHRV-----------RTRKAELLFLARCLHLLKP----GGRAA 320 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 +++ LF +G +RR L+EN +E ++ LP +F I T + + + T Sbjct: 321 VIVPDGVLF--GSGLAHRTLRRMLVENHRLEGVIKLPAGVFRPYAGIGTAILLFTRTDTG 378 Query: 417 ERRGKVQLINAT 428 G V + Sbjct: 379 -GTGHVWFYDLR 389 >gi|329730505|gb|EGG66894.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189] Length = 240 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 21/258 (8%) Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I+ TL F G F ++NPP+ KW D E +G L S Sbjct: 1 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKAD 55 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394 F+ H+ + L+ G A+VL LF G A E IRR+L+E + +EA++ LP Sbjct: 56 FAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 108 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 ++F+ T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Sbjct: 109 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIID 162 Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 Y +E K+S + + P R ++ L+ K + Sbjct: 163 TYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIA 221 Query: 514 FWLDILKPMMQQIYPYGW 531 + ++++ Sbjct: 222 EIEQEINAYLKELGVLKD 239 >gi|308182610|ref|YP_003926737.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4] gi|308064795|gb|ADO06687.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4] Length = 543 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 87/549 (15%), Positives = 186/549 (33%), Gaps = 92/549 (16%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 ++ +I L + L + + + D + F K F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCD-----KFEFFFEQEFPNQTIRDYKDFKKEEREDFFITLSD 85 Query: 87 S----------LSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127 + L+ L + +N L++ S N +F T L Sbjct: 86 NKLPKLAYDELLNYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESV 145 Query: 128 -----EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173 E++ L KNF+ + + + I+E+LI+ + + Sbjct: 146 SQYVNEESKRANFTRALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLIKDYNNAGGGK 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL+ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLVSE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ + K +G+TL+ + + Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKEFKG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 + + +SNPPF + + + + + F G+P +D S LF H Sbjct: 305 KMDFIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AIV+ + F E++I R L++ L+ +V +P+ +F T Sbjct: 360 NMLSDK----GKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVVCMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462 + + + +V LI+A+ L K+ + IL+ + ++ + Sbjct: 414 NVSIIFFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRPSDMDLILETFQNKTKKA 470 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFW 515 F ++ + + + + +++ E + L QS Sbjct: 471 DFCTLVSFDEIIEKNYSLNPGQYFTIEDTSETISQAEFENLMQQYSSELTSLFDESQSLQ 530 Query: 516 LDILKPMMQ 524 +IL+ + Sbjct: 531 QEILETLKG 539 >gi|300689755|ref|YP_003750750.1| typeI restriction enzyme (hsdM) [Ralstonia solanacearum PSI07] gi|299076815|emb|CBJ49425.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum PSI07] Length = 481 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 LL ++ + I L V +YE L+ R F TPR +V L Sbjct: 125 LLARVVQLLDAIPL----HRRDVKGAVYESLLGRIALAAQGRP--FHTPRHIVRFMVEL- 177 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV---PHG 244 P TL DP GTGGFL A ++ + HG Sbjct: 178 ---------TRPDPSDTLCDPAAGTGGFLAAAGEYLRREHPGLLHDARQSAHFHHGMFHG 228 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFG 302 E++ + +L+ +E +++ L+ + Y L++PPF Sbjct: 229 YEIDRAMLRIGSMNLLLHGVEG-------ADLRDCDALAA-RHADEAGAYSLILTHPPFT 280 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + + L + +LFL + L GGRAA+++ Sbjct: 281 GDVDHGSADPDLLR-----------LVRTRKAELLFLARCLHLLRP----GGRAAVIVPD 325 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421 LF G +RR L+E+ +E ++ LP +F I T + + + T G Sbjct: 326 GVLFGSGIARG--TLRRMLVEDHKLEGVIKLPGGVFRPYAGIGTAILLFTRTDTG-GTGH 382 Query: 422 VQLINAT 428 V + Sbjct: 383 VWFYDLR 389 >gi|227892723|ref|ZP_04010528.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis DSM 16047] gi|227865500|gb|EEJ72921.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis DSM 16047] Length = 516 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 77/447 (17%), Positives = 146/447 (32%), Gaps = 77/447 (17%) Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM---------------SNIYEHLIRRF 166 I +L L K+ I D + + ++YE+L+ + Sbjct: 121 DAIFKLPTPEFLAKVVDELDDIYATMDKIRKNEIQSTGKNERFDKSDVQGDLYEYLLSKL 180 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ + L+ +P + DP CGT GFL A + Sbjct: 181 STAG--RNGQFRTPRHIIKMMVELM----------NPTPDDKIADPACGTSGFLVTAAEY 228 Query: 227 VADCGSHHKI----------PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 + + K + G +++ + M+ + NI Sbjct: 229 LKNDREKEKAIFYSKEKKAYYKSSMFTGYDMDRTMLRIGAMNMMTHGI-------TDPNI 281 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 Q +LS + L+NPPF K D D V K Sbjct: 282 QYKDSLSDQNIDADEYSLVLANPPF--KGSLDYDTVSDSLLKVC---------KTKKTE- 329 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 + GGR A ++ LF + IR+ L+E + +EA++++P+ Sbjct: 330 ---LLFLTLFLRMLKIGGRCACIVPDGVLF--GSSRAHKTIRKQLVEGNRLEAVISMPSG 384 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +F ++T + I + KV + T + KR +++D I++ Sbjct: 385 VFKPYAGVSTAVLIFTKT-NHGGTDKVWFYDMTADGY---SLDDKRTKVDEDDIPDIINR 440 Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 + + + K + D F ++ V ++ L + K P+ Sbjct: 441 FKNLDKEKDRKRTDKSFFVDKKEIVD----NNYDLSINRYKEI-------KYVPVKYPPT 489 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKS 542 DIL +M+ +K ++ Sbjct: 490 KDILAEIMKLDEEANKDLQELKNMLEK 516 >gi|223938811|ref|ZP_03630699.1| N-6 DNA methylase [bacterium Ellin514] gi|223892509|gb|EEF58982.1| N-6 DNA methylase [bacterium Ellin514] Length = 811 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 71/400 (17%), Positives = 135/400 (33%), Gaps = 69/400 (17%) Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + IF++ L K + + +E+L+ GS+ Sbjct: 101 REIFKNAYLP-----YRDPETLKAFLKIIDEFTYDHSER----LGDAFEYLLSVLGSQG- 150 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 A F TPR ++ +++ P T+ DP CGT GFL + H+ Sbjct: 151 -DAGQFRTPRHIIDFIVSVV----------DPKKNETVLDPACGTAGFLISSYKHILRAN 199 Query: 232 SHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + L G ++ P+ + + + + +I + T Sbjct: 200 TDARGNSKLTPDDRGRLAKNFKGYDISPDMVRLSLVNLYLHGF-------TDPHIYEYDT 252 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L+ + + L+NPPF + + RF + +LF+ + Sbjct: 253 LTSEERWNEFADVILANPPF-MSPKGGIKPHK---------RFSV---PSNRSEVLFVDY 299 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 + L GRA I++ +F +R LL+ LI I++LP+ +F Sbjct: 300 MLEHL----TAHGRAGIIVPEGIIFQSGT--AYRRLREVLLKESLI-GIISLPSGVFQPY 352 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + + T + IL R + R V + + + G KR + + ++ Y + Sbjct: 353 SGVKTSILILDKR-VAKSRPHVLFSDIRAIGV---SLGVKRTVTERNDLPFVVQDYAAYH 408 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 G L +F R + +I +EA Sbjct: 409 EG---TELSRHSFLVERNAI---AANDYIFSAERYRPVEA 442 >gi|293372411|ref|ZP_06618795.1| putative type I restriction-modification system, M subunit [Bacteroides ovatus SD CMC 3f] gi|292632594|gb|EFF51188.1| putative type I restriction-modification system, M subunit [Bacteroides ovatus SD CMC 3f] Length = 553 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 84/491 (17%), Positives = 166/491 (33%), Gaps = 79/491 (16%) Query: 27 KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 ++ +I L + L L+ T+S + +K + E+ + Sbjct: 27 DGNEYK-IITQVFLYKFLNDKFGYELKNTKSDIAKKLIGDVKWETAYENLSDDERMLIQS 85 Query: 83 TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135 + L + NL + F I E + D ST L++ Sbjct: 86 AISPDVPMLEPYHLIANLWNQQSKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145 Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176 + + S+I+E+LI+ + + + Sbjct: 146 ALTPFVTDTAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP + + LL+ + L YDP+ GTG L + + + Sbjct: 206 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 252 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------ 290 Q++ ++ + L + N QG TL Sbjct: 253 -DRCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVNPYHKSDGGQQLR 306 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343 +F + +SNPPF + ++ + RF G+P SM F+ H+ Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L+ G+ AIV+ + F E++I ++++ ++ V++P+++F T Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKIVYGCVSMPSNVFANTGT 415 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSREN- 461 + KV LI+A+ L ++ G K+ +ND++ +I+ + +E Sbjct: 416 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAV 472 Query: 462 GKFSRMLDYRT 472 FS + Y Sbjct: 473 DDFSVAVTYDE 483 >gi|308063301|gb|ADO05188.1| type I restriction enzyme M protein [Helicobacter pylori Sat464] Length = 543 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 85/544 (15%), Positives = 184/544 (33%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68 ++ +I L + L E + E+ F + ID Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFITLIDKRLPK 90 Query: 69 --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121 + + +N ++ L + +N + S + I FE + Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R +L KNF + + + I+E+L++ + + + ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + ++ LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIANIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKDLKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AI++ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSVI 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 K KV LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FF---KKTPSANKVVLIDASKLGEECTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L QS +IL+ Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|254390385|ref|ZP_05005602.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064] gi|197704089|gb|EDY49901.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 814 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 69/355 (19%), Positives = 123/355 (34%), Gaps = 47/355 (13%) Query: 109 DNAKAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF- 166 + + FDF+ I E A L + + +++ L+ + Sbjct: 201 EAYQEALGLFDFAPRIAGHRETADL--------ADFVFQQVPARREECAAVFDLLLDHYR 252 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 ++ +F TPR V LL + ++DP C G LT Sbjct: 253 STQGRRDGGEFFTPRSVARTMARLLAA--------AGHPPERVHDPFCRAGEVLTAL--- 301 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +A+ + + G + A+ + + E R ++ + Sbjct: 302 LAELPAQAEPLVTGSAPGVD----ALALARMNLTLHGAEEAALRHR---MEIEDPFAGPG 354 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 G + +NPPFG K + GR P P S G + +L H+ L Sbjct: 355 -EGHGADWVATNPPFGFKLSDEA--------RERWGRPWPYGPPGSRGDLAWLQHVVESL 405 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GGRAA+V+ + F G +R ++ + ++E ++ LP LF T I Sbjct: 406 AP----GGRAAVVMPNGAGFAGGRAQ---TVRARMVHDGVVECVMELPPHLFSDTAIPVS 458 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +W+L+ + RR V ++ + L G R D ++ Y + N Sbjct: 459 IWMLTRPRPGTRRRDVLFVDGSALGAMT---GPASREFTDADIAALVGAYSTWRN 510 >gi|294813863|ref|ZP_06772506.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064] gi|326442281|ref|ZP_08217015.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294326462|gb|EFG08105.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 752 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 69/355 (19%), Positives = 123/355 (34%), Gaps = 47/355 (13%) Query: 109 DNAKAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF- 166 + + FDF+ I E A L + + +++ L+ + Sbjct: 139 EAYQEALGLFDFAPRIAGHRETADL--------ADFVFQQVPARREECAAVFDLLLDHYR 190 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 ++ +F TPR V LL + ++DP C G LT Sbjct: 191 STQGRRDGGEFFTPRSVARTMARLLAA--------AGHPPERVHDPFCRAGEVLTAL--- 239 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +A+ + + G + A+ + + E R ++ + Sbjct: 240 LAELPAQAEPLVTGSAPGVD----ALALARMNLTLHGAEEAALRHR---MEIEDPFAGPG 292 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 G + +NPPFG K + GR P P S G + +L H+ L Sbjct: 293 -EGHGADWVATNPPFGFKLSDEA--------RERWGRPWPYGPPGSRGDLAWLQHVVESL 343 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 GGRAA+V+ + F G +R ++ + ++E ++ LP LF T I Sbjct: 344 AP----GGRAAVVMPNGAGFAGGRAQ---TVRARMVHDGVVECVMELPPHLFSDTAIPVS 396 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +W+L+ + RR V ++ + L G R D ++ Y + N Sbjct: 397 IWMLTRPRPGTRRRDVLFVDGSALGAMT---GPASREFTDADIAALVGAYSTWRN 448 >gi|257784006|ref|YP_003179223.1| N-6 DNA methylase [Atopobium parvulum DSM 20469] gi|257472513|gb|ACV50632.1| N-6 DNA methylase [Atopobium parvulum DSM 20469] Length = 506 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 73/499 (14%), Positives = 161/499 (32%), Gaps = 85/499 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +R L+ + E+ I E E ++ + Sbjct: 35 LMFIRSLDD-----KELESERMEEL---GIPQEYLFPQTSEG----QEMRWCSIKNMAPE 82 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPDTVPDR--V 154 LE+ K + +D F+ ++ + K SGI+ + + Sbjct: 83 KMLEAIRDKVFPFIKTLHDDTPFARSMRDATFGINNPRTLQKAVSGIDSLMNDFENDMDD 142 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + ++YE+++ + + F TP+ + + A++ P + DP Sbjct: 143 LGDLYEYMLSKLSTAG--TNGQFRTPKHIRDMMVAMV----------DPRPGERICDPAM 190 Query: 215 GTGGFLTDAMNHV--------------------ADCGSHHKIPPILVPHGQELEPETHAV 254 GT GFL A +H+ D + G E + + Sbjct: 191 GTAGFLISAADHLRNDSAMKDDDWTVFAGEAAEKDADGNVVAEGRHQFSGGETDQTMFRI 250 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 +++ + +I+ ++SK T ++ L+NPPF + + A Sbjct: 251 SAMNLMLHGI-------SQPDIKLVDSVSKQNTTSDKYDLVLANPPFTGSVDTEDIAPSL 303 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + + +LF+ L++ GGR A ++ + LF + Sbjct: 304 KA-----------ICNSKQTELLFVALFLRMLKV----GGRCACIVPNGVLFRTNSK-AY 347 Query: 375 SEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLW- 431 ++R+ L++N + AI+ +P+ +F + ++T + + + KV L N Sbjct: 348 RQLRQELVDNQQLRAIIYMPSGVFKPYS-GVSTAVLVFTKT-NAGGTDKVWLYNMEGDGY 405 Query: 432 --TSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 R+ + D + + S K + + F + + Sbjct: 406 TLDDKRDIDDAHNDVPDILERWAHLESEEKRDRKQKSFLVSKQDIIDNDYDFSFNKYVET 465 Query: 482 RPLRMSFILDKTGLARLEA 500 R+ + + +A L+ Sbjct: 466 EYERIEYPPTEQIVAELDE 484 >gi|77413781|ref|ZP_00789961.1| N-6 DNA Methylase family [Streptococcus agalactiae 515] gi|77160143|gb|EAO71274.1| N-6 DNA Methylase family [Streptococcus agalactiae 515] Length = 487 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 148/430 (34%), Gaps = 52/430 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E + Y + ++ ++ + L + Sbjct: 33 LLFLK-IYDSRELVWELEEDDYESIIPEDLKWRNWAHAEKGE-QVLTGDDLLDFVNNRLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITPNMPIRKSIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ S + +F TPR +L P + T+ D CGTG Sbjct: 150 IYEKILKDIQSAGNS--GEFYTPRAATDFIAEML----------DPKLGETMADLACGTG 197 Query: 218 GFLTDAMNHVADCGSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N+++ + G E + H + V + + ++ Sbjct: 198 GFLTSTLNYLSKQRKTSEDIQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG + F L + S Sbjct: 251 IIHGNTLEKNVREYTDDEKFDLIMMNPPFGGSE-----------LDTIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + ++ L+E + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKEKLVEEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E+ +L D+ +N K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEQTWFYRL----DMPEGYKNF-SKTKPMKSEHFNP 406 Query: 452 ILDIYVSREN 461 + + + SRE Sbjct: 407 VREWWTSREE 416 >gi|317179168|dbj|BAJ56956.1| Type I restriction enzyme M protein [Helicobacter pylori F30] Length = 543 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 84/544 (15%), Positives = 181/544 (33%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77 ++ +I L + L E T ++ ++ Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQKFPNQTIQDYKDFNEEEKEDFFLTLIDKRLPK 90 Query: 78 YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA------ 130 ++ + Y + N L+ S N +F T L K+ Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDKTTIALFKSVSQYIN 150 Query: 131 ---------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 +L KNF + + + I+E+L++ + + + ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAIVVPTG--FISAKSGIENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 +E+ V LINA+ L K+ + IL+ + ++ + F + Sbjct: 419 FFKKTPSEDG---VVLINASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKAGFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L QS +IL+ Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|270643375|ref|ZP_06222163.1| putative type I restriction-modification system, M subunit [Haemophilus influenzae HK1212] gi|270317275|gb|EFA28841.1| putative type I restriction-modification system, M subunit [Haemophilus influenzae HK1212] Length = 189 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 24/200 (12%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 M IR ++ D + + + ++ K+ + ++NPPF Sbjct: 1 MNMAIRGIDYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSE 47 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + R+ G P + + +L H+ L G+ A++L++ + + E E Sbjct: 48 SLADDPRWAYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--NSQTNNEGE 101 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR+ ++ DL+E +VALP LF T I +W L+ K +R+G+V I+A + Sbjct: 102 IRKGIINADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDR 159 Query: 437 EGKKRRIINDDQRRQILDIY 456 R D +IL + Sbjct: 160 V---LRDFTADDIAKILYRF 176 >gi|262403985|ref|ZP_06080540.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC586] gi|262349017|gb|EEY98155.1| type I restriction-modification system DNA-methyltransferase subunit M [Vibrio sp. RC586] Length = 512 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 146/420 (34%), Gaps = 75/420 (17%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + + V +IYE+L+ + + F TPR ++ + ++ Sbjct: 123 VLRAAVDMVNDLPLDKSDVKGDIYEYLLSKLS--SAGINGQFRTPRHIIDMMVEMI---- 176 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSH 233 + DP CGT GFL+ +M ++ + Sbjct: 177 ------DVQPTDVICDPACGTAGFLSRSMEYLTRTHTSAESIYQDEDGNPVYTGDLLHEY 230 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTG 289 + G + + V ML+ + + NI +L+K Sbjct: 231 QDHINTKMFWGFDFDNTMLRVSAMNMLLHGV-------SAANITYQDSLNKSFLGQPQEE 283 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F L+NPPF K D+ +V + + K +LF+ + L+ Sbjct: 284 NFFDKILANPPF--KGSLDEQSVNPK---------VLSMVKTKKTELLFVALILRMLK-- 330 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408 GGR+A ++ LF + S ++R+ L++++ +EA+++LP+ +F ++T + Sbjct: 331 --LGGRSATIVPDGVLF--GSSSAHQDLRKTLIDHNQLEAMISLPSGVFKPYAGVSTGIL 386 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 I + + V + T + KR I D+ L + + Sbjct: 387 IFTKGGS---TDNVLFYDMTADGY---SLDDKRNPIKDNDIPDALAKWKRYNALYQANDQ 440 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-LHQSFWLDILKPMMQQIY 527 + + +F++ + + D++ + ++Q + K ++ ++ Sbjct: 441 QALKAEFGDKT-----QKAFMVSADEIKAQKYDLSINRYKEVVYQEESYEDPKVILGKLK 495 >gi|322379268|ref|ZP_08053654.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1] gi|321148305|gb|EFX42819.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1] Length = 301 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 101/300 (33%), Gaps = 46/300 (15%) Query: 3 EFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAV 55 + + + L IW A+ L G DF + +L L R L L + Sbjct: 8 QTSSTHRDHLFKAIWNIADKLRGAVDGWDFKQFVLGMILYRYLSENLANYINETEQKRDA 67 Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST--------LGSTNTRNNLESY---I 104 Y +L + + FY L + L I Sbjct: 68 SFNYAKLKDEKANLAKEMLLEEKGFYIPPSGLFENVIENLGPLLKAGKLNTTLNDIFKNI 127 Query: 105 ASFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD- 152 + S +N K +F D D +S +L K + ++ + + +++ Sbjct: 128 EASSLQSEAQENFKGLFADLDMNS--DKLGNGVKSKNENIARLLEGVASMQISHYQKNGI 185 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V + YE L+ + S + +F TP +V L T L++ ++ K +YDP Sbjct: 186 DVFGDAYEFLMGMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKSINK--------VYDP 237 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L + GQE+ T+ +C A ML+ ++ D Sbjct: 238 CCGSGSLLLQFAKILGVENIKQG------FFGQEINQTTYNLCRANMLLHNVDYDKFHIN 291 >gi|167627756|ref|YP_001678256.1| N-6 DNA methylase family [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597757|gb|ABZ87755.1| N-6 DNA methylase family [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 315 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 123/312 (39%), Gaps = 54/312 (17%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +F TPR +V ++ +P +T+YDP GT GFL DA H+ Sbjct: 3 SDGGNSGEFYTPRPLVKAIVDVV----------NPQTGQTVYDPAAGTCGFLIDAYEHMY 52 Query: 229 DC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + K G+E P ++ + V M++ + S NI + +TL KD Sbjct: 53 SKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI-------TSPNINKANTLVKD 105 Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMH 341 L R+ L+NPPFG K + P S+ +LFL H Sbjct: 106 IRSLEEKDRYDIILANPPFGGKEKATIQTNF---------------PIKSNATELLFLQH 150 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 + L+ GGR +V+ LF + + +++ LLEN + IV+LP +F Sbjct: 151 IYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPY 204 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + + T + E + T + K + I + + L+I+ SR+ Sbjct: 205 SGVKTNVIFFDR---EGSTTDIFYYEITPPYKLT-----KNKPIQFEHFAEFLEIWQSRK 256 Query: 461 NGKFSRMLDYRT 472 + S +++ Sbjct: 257 LTENSWIVNVAD 268 >gi|329724457|gb|EGG60965.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189] Length = 240 Score = 148 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 21/258 (8%) Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I+ TL F G F ++NPP+ KW D E +G L S Sbjct: 1 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKAD 55 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394 F+ H+ + L+ G A+VL LF G A E IRR+L+E + +EA++ LP Sbjct: 56 FAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 108 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 ++F+ T+I T + + +K ++ V I+A++ + GK + ++D Q +I+D Sbjct: 109 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIID 162 Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 Y + K+S + + P R ++ L+ K + Sbjct: 163 TYKRKATIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIA 221 Query: 514 FWLDILKPMMQQIYPYGW 531 + ++++ Sbjct: 222 EIEQEINAYLKELGVLKD 239 >gi|317181780|dbj|BAJ59564.1| Type I restriction enzyme M protein [Helicobacter pylori F57] Length = 543 Score = 148 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 83/544 (15%), Positives = 178/544 (32%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77 ++ +I L + L E T ++ ++ Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFKQEFPNQTIQDYKDFNEEEKEDFFLTLIDKRLPK 90 Query: 78 YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFEDFDFSSTIARL--------- 127 ++ + Y + N L++ S N +F T L Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTKSTDETTIALFESVSQYIN 150 Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 ++A + + + + I+E+L++ + S+ ++ Sbjct: 151 EESKRANFTRALLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTN 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ ML L + K +G+TL+ + + + Y Sbjct: 255 SCTLYAQDISQKSLK-----MLKLNLILNNLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNML-- 362 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 + G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 363 --SDNGKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVI 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 K +V LI+A+ L K+ + + IL + ++ + F + Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRESDIDLILKTFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L QS +IL+ Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|261837872|gb|ACX97638.1| type I restriction enzyme M protein [Helicobacter pylori 51] Length = 543 Score = 148 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 82/544 (15%), Positives = 177/544 (32%), Gaps = 82/544 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77 ++ +I L + L E T ++ ++ Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEGFFLKLIDKRLPK 90 Query: 78 YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFE---------------DFDFS 121 ++ + Y + N L++ S N +F + Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTKSTDETTIALFESISQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R +L KNF + + + I+E+L++ + S+ ++ Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + + Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGEMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T Sbjct: 365 E----GKGAIVVPTG--FISAKSGIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSAI 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 +E +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FFKKTPSE---DEVILIDASKLGEEYTENKNKKTRLKGSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + +++ E + L QS +IL+ Sbjct: 476 VSFDEIIEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PMMQ 524 + Sbjct: 536 TLKG 539 >gi|325958864|ref|YP_004290330.1| N-6 DNA methylase [Methanobacterium sp. AL-21] gi|325330296|gb|ADZ09358.1| N-6 DNA methylase [Methanobacterium sp. AL-21] Length = 505 Score = 148 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 84/524 (16%), Positives = 172/524 (32%), Gaps = 93/524 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++RL+ R K S + ES F + S+ S + Sbjct: 35 LIYMKRLDD-------DERAKEQNAKFSEEEYESL-------FKDCSDCRWSKWNNMAAD 80 Query: 98 NNLESYIASFSDNAKAIFEDFDF-----SSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 L + + ++ + + LL + + + + Sbjct: 81 EMLIHVREKVFPFLRDLGDENSLYRRYMKDAVFAIPTGSLLVETTSIIDEMHIKEQNLD- 139 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +IYE+L+ + F TPR ++ + ++ P + + DP Sbjct: 140 -TKGDIYEYLLSELKTSGK--NGQFRTPRHIIQMMVKIV----------DPKVNEIICDP 186 Query: 213 TCGTGGFLTDAMNHVADCGSHHK------------------------IPPILVPHGQELE 248 CGT GFL ++ H+ + + G + + Sbjct: 187 ACGTAGFLVNSYRHILKANTSQELIKIDDEGQEYNFKGDKLSKSEYLALKNNSLFGFDFD 246 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 + + +++ + + I Q +T+S F L+NPPF KD Sbjct: 247 QTMVRISLMNLMMHGI-------SNPQIDQINTISMRYNQNPNFDVVLANPPFKGSINKD 299 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + + F K +LFL + N L N GGR A+++ LF Sbjct: 300 ELNDD----------FSINTTKT---EILFLELMYNIL----NIGGRCAVIVPQGVLF-- 340 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINA 427 IR+ LLE+ ++A++++P+ +F ++T + I + + KV + Sbjct: 341 GNSRAHKSIRKKLLEDCRLDAVISMPSGVFRPYAGVSTGILIFTKGEP---TAKVGFYDM 397 Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 + KR I D + I DI +N + D + + + Sbjct: 398 EADGYT---LDDKRTFI--DGKGDIPDIIEKFKNSEPELFQDRKAKHFY-VPYEEIKEND 451 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + L + +E D + + + L++ K +++ + + Sbjct: 452 YSLSISNYKEIEYDEIEYESPDVIKEKILELEKKIIKGLEELDF 495 >gi|315586430|gb|ADU40811.1| type I restriction enzyme M protein [Helicobacter pylori 35A] Length = 543 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 84/547 (15%), Positives = 182/547 (33%), Gaps = 75/547 (13%) Query: 27 KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81 ++ +I L + L E + Y F + + Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPDQKIQDYKDFNEEEKEDFFLTLIDERLPK 90 Query: 82 NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA------ 130 + LS L + +N L++ S N +F T L ++ Sbjct: 91 LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTTSTDETTIALFESISQYIN 150 Query: 131 ---------GLLYKICKNFSGIELHPD---TVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +L KNF + + + I+E+L++ + + + ++ Sbjct: 151 EESKRANFTRVLLGKLKNFDFKQAFLNLQNQQSYDFFAPIFEYLLKDYNNAGTGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ + K +G+TL+ + K Y Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKKCKGEMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLNN 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AIV+ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAIVVPTG--FISAKSGVENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVI 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 K +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKMRLRGSDIDLILETFQNKTQKAGFCTL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + + + +++ E + ++ S S + + + + Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTNEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 528 PYGWAES 534 G Sbjct: 536 TLGNLNY 542 >gi|294792926|ref|ZP_06758072.1| type I restriction-modification system, M subunit [Veillonella sp. 6_1_27] gi|294455871|gb|EFG24235.1| type I restriction-modification system, M subunit [Veillonella sp. 6_1_27] Length = 492 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 63/350 (18%), Positives = 131/350 (37%), Gaps = 49/350 (14%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F+ ++ LL ++ I+ D +IYE +++ + + + +F T Sbjct: 114 FADANNYMKDGVLLRQVINVIDDIDFS-DYDESHAFGDIYETILKEL--QSAGSSGEFYT 170 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKIP 237 PR V A++ +P + + D CGTGGFL + + + Sbjct: 171 PRAVTDFMAAMI----------NPQVGEVMADFACGTGGFLISWLKELHKKVETVADEEA 220 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294 +G E + + + + +L+ ++ + I ++L KD +F Sbjct: 221 YSSSIYGIEKKQFPYMLAITNLLLHDVD-------TPRIFHDNSLVKDVLDYTDKDKFDV 273 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L NPP+G + D + F L + F+ + +L+ G Sbjct: 274 ILMNPPYGGSEKNDVKSH-----------FPADLASSETADL-FMSVIMYRLKNQ----G 317 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 RAA++L LF + + I++ LL + I+ LP+ +F T+I T + N Sbjct: 318 RAAVILPDGFLF--GTDNAKVNIKKKLLNEFNLHTIIRLPSSVFSPYTSITTNVLFFDNT 375 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I D+ ++ K + + + +++ + +R + Sbjct: 376 GETKETW----IYRLDMPEGYKHF-SKTKPMKLEHFEPVINWWNNRTEIE 420 >gi|217031669|ref|ZP_03437174.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128] gi|298736617|ref|YP_003729143.1| type I restriction enzyme M protein [Helicobacter pylori B8] gi|216946869|gb|EEC25465.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128] gi|298355807|emb|CBI66679.1| type I restriction enzyme M protein [Helicobacter pylori B8] Length = 543 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 79/546 (14%), Positives = 177/546 (32%), Gaps = 75/546 (13%) Query: 27 KHTDFGKVILPFTLLRRLECAL---------EPTRSAVREKYLAFGGSNIDLESFVKVAG 77 ++ +I L + L T ++ K+ Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFFFETKFPNKTIQDYKDFNEEEKEIFFTDLYDNKLPK 90 Query: 78 YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFED----------FD-----FS 121 ++ Y + N L++ S N +F F+ + Sbjct: 91 LAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESVSQYIN 150 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 R L KNF+ + + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTKALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL+ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLVSE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ L R +G+TL + + + + Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLINPYHSKECHGKMDFI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSN 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AI++ + F E++I R L+ L+ +V +P+ +F T + Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIIRHLVNERLVYGVVCMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 + + +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + + + +++ E + ++ S S + + + + Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEKISQEEFENLMQQYSSELTSLFDESQNLQQEILE 535 Query: 528 PYGWAE 533 G Sbjct: 536 TLGNLN 541 >gi|114568715|ref|YP_755395.1| N-6 DNA methylase [Maricaulis maris MCS10] gi|114339177|gb|ABI64457.1| N-6 DNA methylase [Maricaulis maris MCS10] Length = 508 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 122/337 (36%), Gaps = 76/337 (22%) Query: 127 LEKAGLLYK---ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 ++ A L+ + + I ++YE+L+ + + F TPR + Sbjct: 109 MKDAQLMIQKPSLLVKAVSIVNDLPLTEGDTKGDLYEYLLSKLTTAG--INGQFRTPRHI 166 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--------------- 228 + L +L P + DP+CGTGGFL + M ++ Sbjct: 167 IKLMVDML----------EPKPTDRISDPSCGTGGFLVNVMEYLLRAYTSPEAVIKETDP 216 Query: 229 ------------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 H + HG + + + +++ ++ + +I Sbjct: 217 ETGKTETLYPGDQLEGHWDHIKGDMFHGFDFDASMLRIAAMNLMLHGVD-------NPDI 269 Query: 277 QQGSTLS---KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 TLS D F + F L+NPPF K D + V + K Sbjct: 270 HYQDTLSGSFTDNFQASATEGFDVILANPPF--KGSLDYEDVHPNLLSAV---------K 318 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL+ + L+ GGR+A ++ LF + + + +R+ L++ + +EA+ Sbjct: 319 TKKTELLFLVLILRMLKP----GGRSATIVPDGVLF--GSSTAHTALRKKLIDQNQLEAV 372 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426 ++LP+ +F ++T + + S V + Sbjct: 373 ISLPSGVFKPYAGVSTGILVFSKGGETR---DVFFYD 406 >gi|323698910|ref|ZP_08110822.1| N-6 DNA methylase [Desulfovibrio sp. ND132] gi|323458842|gb|EGB14707.1| N-6 DNA methylase [Desulfovibrio desulfuricans ND132] Length = 554 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 84/588 (14%), Positives = 179/588 (30%), Gaps = 106/588 (18%) Query: 3 EFTGSAASLANFIWK--NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57 E + L N W + L + I ++RL+ L+ + A E Sbjct: 7 ELKSKISQLWNKFWAGGISNPL-TAIEQ------ITYLLFMKRLDD-LDQKKQADAEWTG 58 Query: 58 -KYLAFGGSNIDLESFVKVAGYSFYNTSEYS-----LSTLGSTNTRNNLESYIASFSDNA 111 Y + F Y ++ + + ++++ + F + Sbjct: 59 EPYTSKFEGLWIPPEFRGKEDEDKYAVDRHTLRWREFKHMQAEEMLQHVQTRVFLFLKDM 118 Query: 112 KAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHL 162 +F + + + K LL + K I + + ++YE L Sbjct: 119 NGATSNFTRHMENAVFIIPKPALLVEAVKTIDEIFEIMEKDSQEKGQAFQDIQGDVYEML 178 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + F TPR ++ L L+ P + + DP CG+GGFL Sbjct: 179 LSEIATAGK--NGQFRTPRHIIKLMADLV----------RPQLGHRIADPACGSGGFLLG 226 Query: 223 AMNHV--------------------------ADCGSHHKIPPILVPHGQELEPETHAVCV 256 A ++ A + G +++ + + Sbjct: 227 AYQYIVTELAKKAGAKDLQPDEDGFVRTSVAAGLTEKAQAILQASLFGYDIDVTMVRLGL 286 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 +++ ++ NI TLSK + ++NPPF Sbjct: 287 MNLMMHGID-------EPNIDYKDTLSKSYLEEGEYDIVMANPPFTGSI----------D 329 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 K K +LF+ + L+ GG A +++ LF +G Sbjct: 330 KGDINENLTVATTKT---ELLFVDNFYRLLKK----GGTACVIVPQGVLF--GSGKAFKA 380 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN------RKTEERRGKVQLINATD 429 +R L++ ++A++ +P+ +F ++T + + + + T+ V Sbjct: 381 LREILVDRCDLKAVITMPSGVFKPYAGVSTAILLFTKVWGPKEKVTQAATEHVWFYEMQA 440 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR---- 485 S+ ++ K+ D I+ + R N + + F R ++ Sbjct: 441 DGYSLDDKRSKQEGYGD--LLDIVARFHER-NTEKDIDRTAKWFMVPRAEIADEKNGYDL 497 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 K ++ D L L + ++ + ++ E Sbjct: 498 SMSRYKKEVFEEVKYDAPGVILKRLLKEEVGEVEDESLGKVKSGIVRE 545 >gi|283782192|ref|YP_003372947.1| N-6 DNA methylase [Pirellula staleyi DSM 6068] gi|283440645|gb|ADB19087.1| N-6 DNA methylase [Pirellula staleyi DSM 6068] Length = 554 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 71/405 (17%), Positives = 141/405 (34%), Gaps = 82/405 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE L+ + F TPR ++ L + L+ +P + + DP Sbjct: 193 DIQGDVYEMLLNEIS--SAGKNGQFRTPRHIIKLISELV----------NPQLGHRICDP 240 Query: 213 TCGTGGFLTDAMNHV---------------------------ADCGSHHKIPPILVPHGQ 245 CGT GFL DA ++ + K +G Sbjct: 241 ACGTAGFLLDAYQYIVTQLARKKVKKQKFEPDEDGFIRTSVSGQLDQNKKDILEQSLYGF 300 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 + + + + +++ ++ + ++ TLSK + ++NPPF Sbjct: 301 DFDSTMVRLALMNLMMHGID-------NPHVDYQDTLSKSFTEEMEYDIVMANPPFTGSI 353 Query: 306 EKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 DK + + GL K + +LF + L+ GG A I++ Sbjct: 354 --DKGDINE------------GLTLKTTKTELLFTERIFTLLKK----GGTAGIIVPQGV 395 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423 LF A E R+ L+E ++A+++LP+ +F +AT + + + GK Q Sbjct: 396 LF--GAAGAFVEARKKLVEEAELKAVISLPSGVFKPYAGVATAILVFTR------SGKTQ 447 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 +L +R ++ + +++ + +R + F + V Sbjct: 448 HTWFYNLANDGMTLDDRRTRVDGSELPDVVEKWNARNPKEKGDRKSNCFF----VPVEEI 503 Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 ++ L +E D T + L LK + +I Sbjct: 504 REKTYDLSFNRYGEVEHDETEHE----DPKSLLQQLKALEDKIQQ 544 >gi|330902769|gb|EGH33773.1| Type I restriction-modification system methylation subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 200 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 28/214 (13%) Query: 80 FYNTSEYSLSTLGST---NTRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGL- 132 F+ S L + N N L + +N + E DF+ + + + L Sbjct: 7 FWVPSSSRFKHLLNEAHTNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQSKIPDLK 66 Query: 133 LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 L ++ +F + L + YE+LI F + +F TPR VV L LL Sbjct: 67 LRQLISHFGQVRLRNSDFEFPDLLGAAYEYLIGEFADSAGKKGGEFYTPRSVVRLMVRLL 126 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 P + +YDP CG+GG L A + + G + GQE Sbjct: 127 ----------RPELKHDIYDPCCGSGGMLIAAKEFIDEHGEDGRK---ANLFGQEFNGTV 173 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 ++ ML+ + + ++Q TLS Sbjct: 174 WSIAKMNMLLHGI-------STADLQNDDTLSDP 200 >gi|146319106|ref|YP_001198818.1| EcoE type I restriction modification enzyme M subunit [Streptococcus suis 05ZYH33] gi|145689912|gb|ABP90418.1| EcoE type I restriction modification enzyme M subunit [Streptococcus suis 05ZYH33] Length = 487 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 129/369 (34%), Gaps = 50/369 (13%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + F ++ LL ++ ++ ++IYE +++ S Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAG 162 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TPR +L +P + T+ D CGTGGFLT +NH+ Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLGQQ 210 Query: 231 GSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285 + G E + H + V + + ++ I G+TL K D Sbjct: 211 RKTSEDVQKYTQAVFGIEKKAFPHLLAVTNLFLHEID-------DPKIIHGNTLEKNVRD 263 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 ++F + NPPFG F L + S+ + LF+ + + Sbjct: 264 YTEDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSSETADLFMAVIMYR 311 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 L+ GR ++L LF + +++ L+E + I+ LP +F T I Sbjct: 312 LKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIH 364 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 T + K E +L + + + + R D + + + +R+ Sbjct: 365 TNILFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQEILE 419 Query: 465 SRMLDYRTF 473 ++F Sbjct: 420 GNFYKSKSF 428 >gi|294809017|ref|ZP_06767739.1| putative type I restriction-modification system, M subunit [Bacteroides xylanisolvens SD CC 1b] gi|294443742|gb|EFG12487.1| putative type I restriction-modification system, M subunit [Bacteroides xylanisolvens SD CC 1b] Length = 553 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 86/491 (17%), Positives = 169/491 (34%), Gaps = 79/491 (16%) Query: 27 KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 ++ +I L + L L+ +S + +K E+ + Sbjct: 27 DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 85 Query: 83 TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135 + L + NL + F I E + D ST + L++ Sbjct: 86 AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTVNTKIPLFE 145 Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176 + + S+I+E+LI+ + + + Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP + + LL+ + L YDP+ GTG L + + + Sbjct: 206 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 252 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290 Q++ ++ + L + N QG TL S D + Sbjct: 253 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 306 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343 +F + +SNPPF + ++ + RF G+P SM F+ H+ Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L+ G+ AIV+ + F E++I ++++ ++ V++P+++F T Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 415 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462 + KV LI+A+ L ++ G K+ +NDD+ +I+ + +E Sbjct: 416 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAV 472 Query: 463 K-FSRMLDYRT 472 + FS + Y Sbjct: 473 EDFSVAVSYDE 483 >gi|264677645|ref|YP_003277551.1| type I restriction-modification system subunit M [Comamonas testosteroni CNB-2] gi|262208157|gb|ACY32255.1| type I restriction-modification system, M subunit, putative [Comamonas testosteroni CNB-2] Length = 142 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 + +FIW A+D L F + VILP +LRRL+C LEP++ AV E+ Sbjct: 6 QNKIVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEEVRFQREDA 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120 +++D + +GY FYNTS ++L +L + NL++Y+ FSDN K I E FD Sbjct: 66 EMADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLGGFSDNVKEIVEKFDL 125 Query: 121 SSTIARLEKAGL 132 + I ++ + G Sbjct: 126 RNQIRKMVQHGR 137 >gi|262183026|ref|ZP_06042447.1| type I restriction enzyme M protein [Corynebacterium aurimucosum ATCC 700975] Length = 533 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 73/424 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NT 96 ++ L+ R +K A G + + L + Sbjct: 44 LLFIKDLD-----ERQVQIDKRRALGDPTATED-IFDASQQD------LRWRNLIEDRDI 91 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIA----RLEKAGLLYKICKNFSGIELHPDTVPD 152 + I K F +A +E L ++ + + Sbjct: 92 ARRKATIINKVFPFIKE-MGGTGFQEHMANASFEIESEATLSRVMELIDQLHFSNK---- 146 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE+++ + + F T ++ L AL+ P + + DP Sbjct: 147 DMKGDLYEYMLDKLSTSG--TNGQFRTTSHIIELLVALM----------EPTPQQRIIDP 194 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLE 265 CGT GFL A + +A G + + + M + E Sbjct: 195 ACGTAGFLVAANDWIAHHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFE 254 Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 NI +L + + F L+NPPF DKDAV+ + K+ Sbjct: 255 -------EPNISYRDSLQQLPTTFDEAFDLVLANPPFAGSL--DKDAVDPKLKS------ 299 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + +LF+ L+ GGRAA+++ LF + +R+ L+E+ Sbjct: 300 ---VTTAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVED 350 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 ++A++ LP+ +F + ++T + + + +V + T + KR Sbjct: 351 QRLDAVIKLPSGVFKPYS-GVSTAVLCFTRTDSG-GTDEVWFYDVTADGY---SLDDKRT 405 Query: 443 IIND 446 + D Sbjct: 406 PLLD 409 >gi|224368579|ref|YP_002602742.1| HsdM1 [Desulfobacterium autotrophicum HRM2] gi|223691295|gb|ACN14578.1| HsdM1 [Desulfobacterium autotrophicum HRM2] Length = 503 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 65/408 (15%), Positives = 138/408 (33%), Gaps = 78/408 (19%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++YE+L+ + + F TPR ++ + +L P T+ DP Sbjct: 138 DTKGDLYEYLLGKLTTAG--INGQFRTPRHIIRMMVDIL----------DPKPDETVADP 185 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL-----------------------VPHGQELEP 249 CGT GFL M ++ + + + + HG + + Sbjct: 186 ACGTAGFLVSVMEYLLENYTSKEAVITHDTGEKTFPGDKLEAHQWKHITHGMFHGFDFDI 245 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGK 303 + V +L+ ++ S I TLS F F L+NPPF Sbjct: 246 TMLRISVMNLLLHGID-------SPTIHYQDTLSNNFPEKFPNFAEDGFDVILANPPFKG 298 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + + K K +LF+ + L+ GGR+A ++ Sbjct: 299 SLDFEDVHPSLLSKV-----------KTKKTELLFVTLILKMLK----LGGRSATIVPDG 343 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 LF + +R+ L+E + +E +++LP+ +F ++T + I + + V Sbjct: 344 VLF--GSSKAHVALRKALVEENQLEGVISLPSGVFKPYAGVSTAILIFTKG---GKTDDV 398 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR------ 476 + T + KR + + +++ + +++ K + F + Sbjct: 399 FYYDLTADG---FSLDDKRVKVEKNDIPDVIERWKNKDPQKDTDKTQKFFFVSKDEIKAN 455 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + ++ + + K +D L+ M+ Sbjct: 456 KYDLSINRYKEIVYEEDEYEPPKDILARMKDLEKEILADMDELEGMLG 503 >gi|302553244|ref|ZP_07305586.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736] gi|302470862|gb|EFL33955.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736] Length = 374 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 70/361 (19%), Positives = 132/361 (36%), Gaps = 45/361 (12%) Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR ++ + P T+ DP CGTGGFL A ++ + P Sbjct: 20 FTPRPLIQAIIDCV----------RPTADDTITDPACGTGGFLLAAAEYILHEYGNQLTP 69 Query: 238 PILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 G EL T + + + + + ++ L+ KR Sbjct: 70 EQRQDLSSGGIWGTELVRNTARLAAMNLFLHGI---GQPTGPALVRTKDALAAP--PDKR 124 Query: 292 FHYCLSNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 L+NPPFGKK D + +E E F + + F+ H+A+ LE Sbjct: 125 ASLVLANPPFGKKSSITVYGDDGSAAREAIAYERRDFWVTTT---NKQLNFVQHIASLLE 181 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 + GRAA+V+ + LF G A GE+ IRR LL+ + ++ LPT +F+ + + Sbjct: 182 IH----GRAAVVVPDNVLFEGGA--GET-IRRRLLKEYDVHTLLRLPTGIFYAGGVKANV 234 Query: 408 WILSNRKT---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 ++ K+ + + + + ++ K+ + + Y R + Sbjct: 235 LFFERKQARPERPWTEKLWVYD----FRTAQHFTLKQNPLTRAALEDFVQCY--RPDEDR 288 Query: 465 SRMLDYRTF-GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 S+ ++ F Y +++ + + + L+ L D+ + Sbjct: 289 SKRVETERFKAYTYEELIARDKANLDITWLRDPSLDDADNLPAPEVLAAEIVEDLQAALE 348 Query: 524 Q 524 + Sbjct: 349 E 349 >gi|149203431|ref|ZP_01880401.1| putative type I restriction enzyme M protein [Roseovarius sp. TM1035] gi|149143264|gb|EDM31303.1| putative type I restriction enzyme M protein [Roseovarius sp. TM1035] Length = 510 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 85/532 (15%), Positives = 168/532 (31%), Gaps = 94/532 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 F + RL E ++ E + F + + L Sbjct: 34 FLMFARLLDINETRDENRLKRAGKRDNPPRFKEDEQHLRWSHFRHLGADEMLPLIRDEVF 93 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + S S A +F + + L + K + I+ P + Sbjct: 94 PHFRKSSTSGSAFA-------EFMKDAQLMIQKPSL--LVKAVNMIDKLP-LTEGDTKGD 143 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +YE+L+ + + F TPR ++ L LL +P + DP+ GTG Sbjct: 144 LYEYLLSKLTTAG--INGQFRTPRHIIKLMIELL----------APQPNEIIGDPSAGTG 191 Query: 218 GFLTDAMNHVAD---------------------------CGSHHKIPPILVPHGQELEPE 250 GFL + M ++ H + + HG + + Sbjct: 192 GFLVETMQYLMKEHTSEEGIDEVTDPETGKTEKIYTGDLLEDHREHIRSKMFHGFDFDAT 251 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKK 304 + +++ ++ +I TLS F L+NPPF Sbjct: 252 MLRIAAMNLMLHGVD-------DPDIHYQDTLSTSFSDKYPQSASDGFDVILANPPFKGT 304 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 + + K K +LFL+ + L+ GR+A ++ Sbjct: 305 LDFEDVHPGLLRKV-----------KTKKTELLFLVLILRMLKDNS---GRSATIVPDGV 350 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423 LF + + +RR L++++ +EA+++LP+ +F ++T + + R V Sbjct: 351 LF--GSSTAHVALRRMLIDDNQLEAVISLPSGVFKPYAGVSTGILVFRKG---GRTDDVF 405 Query: 424 LINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 KR D D ++ + +R+ + + F + Sbjct: 406 FFEVE---HDGFTLDDKRDPTPDKDDLPGCVEAWKNRDAQRLTDRTQKAFF----VPAEE 458 Query: 483 PLRMSFILD----KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 + ++ L K L + EA ++ +S DI + + + G Sbjct: 459 IRQSNYDLSLSKYKERLYKEEAYDPPAEILARMKSLNDDIARDLAELEGMLG 510 >gi|294647362|ref|ZP_06724955.1| putative type I restriction-modification system, M subunit [Bacteroides ovatus SD CC 2a] gi|292637321|gb|EFF55746.1| putative type I restriction-modification system, M subunit [Bacteroides ovatus SD CC 2a] Length = 530 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 86/491 (17%), Positives = 169/491 (34%), Gaps = 79/491 (16%) Query: 27 KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 ++ +I L + L L+ +S + +K E+ + Sbjct: 4 DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 62 Query: 83 TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135 + L + NL + F I E + D ST + L++ Sbjct: 63 AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTVNTKIPLFE 122 Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176 + + S+I+E+LI+ + + + Sbjct: 123 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 182 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP + + LL+ + L YDP+ GTG L + + + Sbjct: 183 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 229 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290 Q++ ++ + L + N QG TL S D + Sbjct: 230 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 283 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343 +F + +SNPPF + ++ + RF G+P SM F+ H+ Sbjct: 284 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 338 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L+ G+ AIV+ + F E++I ++++ ++ V++P+++F T Sbjct: 339 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 392 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462 + KV LI+A+ L ++ G K+ +NDD+ +I+ + +E Sbjct: 393 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAV 449 Query: 463 K-FSRMLDYRT 472 + FS + Y Sbjct: 450 EDFSVAVSYDE 460 >gi|299144864|ref|ZP_07037932.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23] gi|298515355|gb|EFI39236.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23] Length = 553 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 66/355 (18%), Positives = 131/355 (36%), Gaps = 49/355 (13%) Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + + S+I+E+LI+ + + ++ TP + + LL+ Sbjct: 162 RALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLV 221 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 + L YDP+ GTG L + + + Q++ ++ Sbjct: 222 GDNADLHS------MECYDPSAGTGTLLMALSHQIGE--------DRCTIFSQDISQRSN 267 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFGKKWE 306 + L + N QG TL +F + +SNPPF + Sbjct: 268 KMLK-----LNLLLNGLVSSLDNAIQGDTLVNPYHKSDDGQQLRQFDFVVSNPPFKMDFS 322 Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLANKLELPPNGGGRAAIV 359 ++ + RF G+P SM F+ H+ N L+ G+ AIV Sbjct: 323 DTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKT----GKGAIV 373 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 + + F E++I ++++ ++ V++P+++F T + Sbjct: 374 IPTG--FITAKSGIENKILHKIVDDKIVYGCVSMPSNVFANTGTNVSVLFFDK---SATT 428 Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472 KV LI+A+ L ++ G K+ +ND++ +I+ + +E FS + Y Sbjct: 429 DKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAVDDFSVAVTYDE 483 >gi|78189485|ref|YP_379823.1| type I restriction modification enzyme methylase subunit [Chlorobium chlorochromatii CaD3] gi|78171684|gb|ABB28780.1| type I restriction modification enzyme methylase subunit [Chlorobium chlorochromatii CaD3] Length = 579 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 83/572 (14%), Positives = 186/572 (32%), Gaps = 120/572 (20%) Query: 35 ILPFTLLRRLECALEPTRSAVRE-----------------KY-LAFGGSNIDLESFVKVA 76 I ++RL+ L+ + A E +Y + E K A Sbjct: 34 ITYLLFMKRLDE-LDLKKQADAEWTGEPYISRFAGEWIPPEYRAKLSEQDTVEEQQKKQA 92 Query: 77 GYSFYNTSEYS-----LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEK 129 + + ++ + + + +++S + F + +F + + + K Sbjct: 93 EATKFAIAKQTLRWSEFKHMQAEEMLLHVQSKVFPFLKDMNGAESNFTHHMKNAVFIIPK 152 Query: 130 AGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 L+ + K I + + ++YE L+ F TPR Sbjct: 153 PSLMVEAVKTVDEIFEIMEKDSQEKGQAFQDIQGDVYEMLLSEIAQAGK--NGQFRTPRH 210 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------- 227 ++ L T L+ P + + + DP CGT GFL A ++ Sbjct: 211 IIKLMTELV----------QPQLAQRIGDPACGTAGFLLGAYQYIVTQLAIKTSDHFRGV 260 Query: 228 ------------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + + +G +++ + + +++ Sbjct: 261 TNMTDRGAHTFQPDEDGFVRTSVASGLTETAQAILQSSLYGYDIDSTMVRLGLMNLMMHG 320 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++ NI TLSK +H ++NPPF DK + + Sbjct: 321 ID-------EPNIDYKDTLSKSYNEEAEYHIVMANPPFTGSI--DKGDINENLTL----- 366 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + +LF+ ++ L+ GG A +++ LF +G+ +R+ L+E Sbjct: 367 ------STTKTELLFVENIYRLLK----RGGTACVIVPQGVLF--GSGTAFKNLRQLLVE 414 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV-QLINATDLWTSIRNEG--- 438 ++A++ +P+ +F ++T + + + K E + KV Q + ++++G Sbjct: 415 RCELKAVITMPSGVFKPYAGVSTAILLFT--KVYESKEKVRQPATHQVWFYDMQSDGYSL 472 Query: 439 -KKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTF-GYRRIKVLRPLRMSFILDKTGL 495 KR + ++I+ + +R S F Y ++ + Sbjct: 473 DDKRTKLEGYGDLQEIVAKFHARNPATNSDRTQKCFFVPYADLEAEGYDLSISRYKEDVF 532 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + L L + + + I+ Sbjct: 533 EEVHYEAPSAILHQLLAAEVGETANAHLANIH 564 >gi|253755915|ref|YP_003029055.1| type I restriction-modification system M protein [Streptococcus suis BM407] gi|251818379|emb|CAZ56207.1| type I restriction-modification system M protein [Streptococcus suis BM407] Length = 487 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 130/369 (35%), Gaps = 50/369 (13%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + F ++ LL ++ ++ ++IYE +++ S Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAG 162 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TPR +L +P + T+ D CGTGGFLT +NH++ Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLSQQ 210 Query: 231 GSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285 + G E + H + V + + ++ I G+TL K D Sbjct: 211 RKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-------DPKIIHGNTLEKNVRD 263 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 ++F + NPPFG F L + S+ + LF+ + + Sbjct: 264 YTEDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSSETADLFMAVIMYR 311 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 L+ GR ++L LF + +++ L+E + I+ LP +F T I Sbjct: 312 LKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIH 364 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 T + K E +L + + + + R D + + + +R+ Sbjct: 365 TNILFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQEILE 419 Query: 465 SRMLDYRTF 473 ++F Sbjct: 420 GNFYKSKSF 428 >gi|158333869|ref|YP_001515041.1| type I restriction modification system M subunit [Acaryochloris marina MBIC11017] gi|158304110|gb|ABW25727.1| type I restriction modification system M subunit, putative [Acaryochloris marina MBIC11017] Length = 381 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 67/407 (16%), Positives = 137/407 (33%), Gaps = 74/407 (18%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + A +L + IE+ ++YE+++ + + F TPR ++ L Sbjct: 8 MPTARVLANVVDQLDAIEMA----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIKL 61 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPP 238 L +P + DP CGT GFL A ++ D S + Sbjct: 62 MVEL----------TAPTPKDVICDPACGTAGFLIAASEYLMDHHSDVIYKDAESRRRFN 111 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHY 294 G + + + ML+ +E +I+ +L++ + Sbjct: 112 EETFSGYDFDSTMLRIGSMNMLLHGVE-------KPDIRYKDSLAEADAAAGDDEEAYSL 164 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPF + + A + + K + GG Sbjct: 165 ILANPPFAGSLDYETTAKDL-----------LKVVKTKKTE----LLFLTLFLRVLQTGG 209 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 RAA+++ LF + +R+ L+E+ ++ I+++P+ +F ++T + + + Sbjct: 210 RAAVIVPDGVLF--GSSKAHKALRKMLVEDQKLDGIISMPSGVFKPYAGVSTAIVLFTKT 267 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRE------NGKFSR 466 + +V + + T + KR D IL + +RE + S Sbjct: 268 NSG-GTDQVWFYD---MQTDGFSLDDKRTEQPDKSDLPDILTRWQAREAEAERKRTEQSF 323 Query: 467 MLDYRTF----------GYRRIKVLRPLRMSFILDKTGLARLEADIT 503 ++ Y+ + + LA+LE +I Sbjct: 324 LVPREEIVENDYDLSINRYKEVVYEAVEYDPPGVILKRLAKLEKEIA 370 >gi|291540211|emb|CBL13322.1| Type I restriction-modification system methyltransferase subunit [Roseburia intestinalis XB6B4] Length = 269 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 115/289 (39%), Gaps = 45/289 (15%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 FS E I+E+LI+ + + + ++ TP + + +++ Sbjct: 8 FSFAEAFSQKYDFFA--TIFEYLIKDYNKDFGK-YAEYYTPHSIASIIARIMVPEGVQNV 64 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 T+YDP G+G + + + + + Q++ +++ Sbjct: 65 --------TVYDPAAGSGTLVLALAHEIGESN--------CTIYTQDISQKSN-----EF 103 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFGKKWEKDKDAVE 313 L L + ++ G TL + +F Y +SNPPF + ++D + Sbjct: 104 LRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGLMKFDYIVSNPPFNVDFSDNRDTL- 162 Query: 314 KEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + RF G+P + + + +FL H+ ++ GGRAA+V+ + L Sbjct: 163 --AGDIYKERFWAGVPNVPNKNKDSMAIYQMFLQHIIFSMK---ENGGRAAVVVPTGFLT 217 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 G +IR ++E+ ++ +V++P+++F T + L N K+ Sbjct: 218 AGTRI--PKKIRERIVEDRMLRGVVSMPSNIFATTGTNVSVLFLDNSKS 264 >gi|210134633|ref|YP_002301072.1| type I R-M system M protein [Helicobacter pylori P12] gi|210132601|gb|ACJ07592.1| type I R-M system M protein [Helicobacter pylori P12] Length = 543 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 85/542 (15%), Positives = 181/542 (33%), Gaps = 82/542 (15%) Query: 27 KHTDFGKVILPFTLLRRLECAL---------EPTRSAVREKYLAFGGSNIDLESFVKVAG 77 ++ +I L + L T ++ S K+ Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFFFEQEFPNQTIRDYKDFKKEEKEDFFLTLSDKKLPK 90 Query: 78 YSFYNTSEYSLST-LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--------- 127 ++ Y + L++ S+N +F T L Sbjct: 91 LAYDELLNYLFEKHFYDNDLHLKLDAIFNRISNNNAELFNTTSTDKTTIALFESVSQYIN 150 Query: 128 EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 E++ L KNF+ + + + I+E+LI+ + E ++ Sbjct: 151 EESKRANFTRSLLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLIKDYNKAGGETYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL++ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLINE--------PTQSVKIYDPSTGTGTLLMALAHQI--------GTT 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ L R +G+TL+ + + + Y Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHSKECHGKMDYI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSN 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AI++ + F E++I R L++ L+ +V +P+ +F T + Sbjct: 365 K----GKGAIIVPTG--FISTKSGVENKIVRHLVDGRLVYGVVCMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467 + + +V LI+A+ L K+ + IL+ + ++ + F + Sbjct: 419 FFQKTPSAK---EVVLIDASKLGEEYTENKNKKTHLRPSDIDLILETFQNKTQKADFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520 + + + + + +++ E + L QS +IL+ Sbjct: 476 VSFDEIIGKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535 Query: 521 PM 522 + Sbjct: 536 TL 537 >gi|251791791|ref|YP_003006512.1| N-6 DNA methylase [Dickeya zeae Ech1591] gi|247540412|gb|ACT09033.1| N-6 DNA methylase [Dickeya zeae Ech1591] Length = 570 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 84/572 (14%), Positives = 181/572 (31%), Gaps = 111/572 (19%) Query: 35 ILPFTLLRRLECA-------LEPTRSAVREKYL----------AFGGSNIDLESFVKVAG 77 I ++RL+ E T K+ + D E K+ Sbjct: 34 ITYLLFMKRLDELDQKRQADAEFTGEKYTSKFEGSWIPPEYRARREAKDTDAEWAKKLED 93 Query: 78 YSFYNTSEYS-----LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKA 130 Y + + + + +++ + F + +F + + + K Sbjct: 94 EKRYQIEKRTLRWSEFKRMQAEEMLQHVQGKVFPFLKDLNGAESNFTHHMKNAVFIIPKP 153 Query: 131 GLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 LL + K I + + ++YE L+ + F TPR + Sbjct: 154 ALLVEAVKTIDDIFEIMERDSREKGQAFQDIQGDVYEFLLSEIATAGK--NGQFRTPRHI 211 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----------ADCGSH 233 + L L+ P + + + DP CGTGGFL A ++ D Sbjct: 212 IKLIADLV----------RPQLGQRIVDPACGTGGFLLGAYQYIVTQLAIKDGKQDLSPD 261 Query: 234 HKIPPILV----------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 +G +++ + + +++ ++ +I Sbjct: 262 EDGFARTSVAAGLTRKTQLILQESLYGYDIDATMVRLGLMNLMMHGID-------EPHID 314 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 TLSK + L+NPPF DK + + + + +L Sbjct: 315 YQDTLSKGYNEEASYDIVLANPPFTGSI--DKGDINENLQL-----------ATTKTELL 361 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ ++ L+ GG A +++ LF+ ++R+ L+E ++A++ +P+ + Sbjct: 362 FVENIYRLLKK----GGTAGVIVPQGVLFSSAK--AFRDLRQTLVERCDLKAVITVPSGV 415 Query: 398 FFR-TNIATYLWILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 F ++T + + + + T G V S+ ++ K+ D + Sbjct: 416 FKPYAGVSTAILLFTKVWGPKDKVTAPATGHVWFYEMAADGYSLDDKRTKQEGYGD--LQ 473 Query: 451 QILDIYVSRE----NGKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITW 504 I+ Y +R+ S F R ++ + ++ D Sbjct: 474 DIITSYHARDVAAIPDDKSDRTARC-FMVPRTEIEAESYDLSLSRYKQDVFEEVQYDKPS 532 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 L L Q+ D+ + + ++ E Sbjct: 533 VILERLIQAEVGDVKEADLTKVQSGIVRELLE 564 >gi|113476047|ref|YP_722108.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101] gi|110167095|gb|ABG51635.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101] Length = 493 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 64/456 (14%), Positives = 142/456 (31%), Gaps = 76/456 (16%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +++L+ + ++ A + + A S S T Sbjct: 35 LLFIKQLD------QQEAVKEKKARRLKKVKEKLIFSEASQS------CRWSHFKELATD 82 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-------GLLYKICKNFSGIELHPDTV 150 E+ K + + ++ ++ A LL + + + L Sbjct: 83 KMFEAVRDEAFPFIKTLGGTLENNAYSRHMKDAVFMIGSPALLANVVQQIDSLPLD---- 138 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++YE+++ + + F TPR ++ + L+ P + Sbjct: 139 DRDTKGDLYEYMLSKLNTAG--QNGQFRTPRHIIKMIVDLMT----------PQPNDVVC 186 Query: 211 DPTCGTGGFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAGM 259 DP GT GFL H+ + + + HG + + + + Sbjct: 187 DPAFGTAGFLVAVAEHLQQLKDENGSLVLNAPGNKEHFYQHMFHGFDFDATMLRIGSMNL 246 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + +E + I+ LS+D + F L+NPPF +K A Sbjct: 247 MQHGIE-------NAQIEARDALSEDHAGVEEMFTLVLANPPFKGSIQKSSIA------- 292 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + K + GGRAA+++ LF + ++R Sbjct: 293 -KDLTKIVNTTKTE-------LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSKAHKDVR 342 Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 + L+E ++ ++++P+ +F ++T + + + V + + + Sbjct: 343 KMLVEEHKLDGVISMPSGVFKPYAGVSTAILMFTKT-GAGGTDFVWFCD---MQADGFSL 398 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 KR+ + ++ I + R K F Sbjct: 399 DDKRQPVEENDISNITKSWQKRNPKKDKDRNSKTFF 434 >gi|253752154|ref|YP_003025295.1| type I restriction-modification system M protein [Streptococcus suis SC84] gi|253753980|ref|YP_003027121.1| type I restriction-modification system M protein [Streptococcus suis P1/7] gi|251816443|emb|CAZ52079.1| type I restriction-modification system M protein [Streptococcus suis SC84] gi|251820226|emb|CAR46647.1| type I restriction-modification system M protein [Streptococcus suis P1/7] gi|292558742|gb|ADE31743.1| Type I restriction enzyme EcoEI M protein [Streptococcus suis GZ1] gi|319758541|gb|ADV70483.1| type I restriction-modification system M protein [Streptococcus suis JS14] Length = 487 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 129/369 (34%), Gaps = 50/369 (13%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + F ++ LL ++ ++ ++IYE +++ S Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAG 162 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TPR +L +P + T+ D CGTGGFLT +NH+ Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLGQQ 210 Query: 231 GSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285 + G E + H + V + + ++ I G+TL K D Sbjct: 211 RKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-------DPKIIHGNTLEKNVRD 263 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 ++F + NPPFG F L + S+ + LF+ + + Sbjct: 264 YTEDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSSETADLFMAVIMYR 311 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 L+ GR ++L LF + +++ L+E + I+ LP +F T I Sbjct: 312 LKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIH 364 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 T + K E +L + + + + R D + + + +R+ Sbjct: 365 TNILFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQEILE 419 Query: 465 SRMLDYRTF 473 ++F Sbjct: 420 GNFYKSKSF 428 >gi|317013881|gb|ADU81317.1| type I restriction enzyme M protein [Helicobacter pylori Gambia94/24] Length = 543 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 81/530 (15%), Positives = 176/530 (33%), Gaps = 75/530 (14%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTR-----SAVREKYLAFGGSNIDLESFVKVAGYSFY 81 ++ +I L + L E + Y F + Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFFFKTKFPNKTIRDYKDFNEEEKEDFFLTLSDKQLPK 90 Query: 82 NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127 + LS L + +N L++ S N +F T L Sbjct: 91 LAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESVSQYIN 150 Query: 128 EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 E++ L KNF+ + + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTRALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL+ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLV--------NKPTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ L R +G+TL + + + Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLINPYHSKDHKGKMDFI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSP 364 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G+ AI++ + F E++I R L++ L+ ++ +P+ +F T + Sbjct: 365 K----GKGAIIVPTG--FISAKSGIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSII 418 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRM 467 + + +V LI+A+ L K+ + IL+ + ++ F + Sbjct: 419 FFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRASDMDLILETFQNKAPKSDFCAL 475 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 + + + + + +++ E + ++ S S + + Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSETISQAEFESLMQQYSSELTSLFDE 525 >gi|282878166|ref|ZP_06286963.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310] gi|281299744|gb|EFA92116.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310] Length = 503 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 72/434 (16%), Positives = 152/434 (35%), Gaps = 51/434 (11%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E + Y + ++ G S + L + + Sbjct: 33 MLFLK-VYDEKENDWELDDDDYKSIIPEECRWRNWAHDDG-SGNALTGDDLLSFVNNTLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ + + + F ++ L ++ G+ L D Sbjct: 91 VKLKNIEITPNTPIREAIVKTTFEDANQYMKDGVQLRQVLNVIDGLNLG-DYEESHAFGE 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + + +F TPR + ++ +P + + D CGTG Sbjct: 150 IYETILKEM--QSAGSSGEFYTPRALTEFMAEIV----------NPQIGEKMADFACGTG 197 Query: 218 GFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GF+T + + + G E + + +CV +L+ +++ Sbjct: 198 GFITSWLGELDKKVKTAEDRKEYNQSVFGIEKKQFPYMLCVTNLLLHGIDTPL------- 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + ++L+KD +F L NPP+G + D + + S Sbjct: 251 VFHDNSLTKDVLNYTDEDKFDVVLMNPPYGGNEKSDVKSHFPSDM------------RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF++ + +L+ GRAA+++ LF A + + I+ LL + + I+ Sbjct: 299 ETADLFMVLIMYRLKK----NGRAAVIVPDGFLF--GADNTKIAIKTKLLRDFNLHTIIR 352 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDD 447 LP +F T+IAT + N + + T + EG K + + Sbjct: 353 LPGSIFAPYTSIATNILFFDNT-CADGAPEGFSTKDTWFYRLDMPEGYKHFSKTKSMKSV 411 Query: 448 QRRQILDIYVSREN 461 I + + R+ Sbjct: 412 HCDPIREWWNDRKE 425 >gi|313678680|ref|YP_004056420.1| type I restriction-modification system, M subunit [Mycoplasma bovis PG45] gi|312950278|gb|ADR24873.1| type I restriction-modification system, M subunit [Mycoplasma bovis PG45] Length = 483 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 77/443 (17%), Positives = 160/443 (36%), Gaps = 58/443 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + ++ + E S I G + + L + Sbjct: 33 LLFLK-----IYDSKDKIWEMEDDSYKSIIPDNLKWSNWGSGSNSITGDELLNFVNNELL 87 Query: 98 NNLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 L+ I K I + F ++ LL ++ + + + + Sbjct: 88 KTLKEIKINPDMPFRKQIVKSA-FEDISNYMKDGTLLRQVINVIDELNF-DNIKEIHLFN 145 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +IYE ++++ G+ +F TPR + +L P + +T+ D CGT Sbjct: 146 DIYETILKKIQE---GGSGEFYTPRALTDFIAEIL----------DPKLGQTMADLACGT 192 Query: 217 GGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GGFLT +N V + + + +G E + + + V + + ++ Sbjct: 193 GGFLTSFLNRVNEQKNTLEDIKKYSQSVYGIEKKGFPYLLAVINLFLHNVD-------DP 245 Query: 275 NIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 N+ G++L KD ++F + NPPFG ++ ++ + Sbjct: 246 NLLHGNSLEKNVKDYSEDEKFDLIMMNPPFGGS---EQKIIQSNFPKDL---------RS 293 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 ++ + LF++ + ++L+ GG+AA++L LF A I++ L + I+ Sbjct: 294 AETADLFMLVIMHRLK----MGGKAAVILPDGFLFGTGAQ---KNIKKKLFSEFNVHTII 346 Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 LP +F T+I T + N + + +L D+ + +N K + + Sbjct: 347 RLPKTVFSPYTDINTNIIFFDNNGSTKSTWFYRL----DMPENQKNF-SKTKPMVSKHLD 401 Query: 451 QILDIYVSRENGKFSRMLDYRTF 473 I + +R + F Sbjct: 402 PIRQWWNNRNEIIEDTFYKSKQF 424 >gi|148990031|ref|ZP_01821285.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP6-BS73] gi|147924557|gb|EDK75644.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP6-BS73] Length = 467 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ A + L + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTNDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + D + +RE + ++F +++ LD+ G + E +I Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452 >gi|297571613|ref|YP_003697387.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595] gi|296931960|gb|ADH92768.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595] Length = 490 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 82/446 (18%), Positives = 157/446 (35%), Gaps = 83/446 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG----------YSFYNTSEYS 87 L+ + A E + + Y + + S+ F N E Sbjct: 33 MLFLK-VYDAKEANWEIMLDDYESIIPERLRWRSWAPDHKDGRSMTGDELLIFLN--EDL 89 Query: 88 LSTLGSTNTRNN--LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 TL + N L I K +FED + ++ L+ ++ + I Sbjct: 90 FPTLKTLPITENTPLSQTI------VKGVFEDSN-----QYMKDGILIRQLVNLINEINF 138 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 D IYE L++ + + + ++ TPR V +L +P + Sbjct: 139 -DDYADLHAFGEIYETLLKEL--QSAGSSGEYYTPRAVTDFMIKML----------NPKL 185 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + D GT GFLT A+ H+ + G E +P + + V +L+ Sbjct: 186 GERVADFAAGTSGFLTSALKHLDTQVESVEDREKFQNAVFGIEKKPMPYLLGVTNLLLHD 245 Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 ++ G++LS++ ++F NPP+G +++AV+ Sbjct: 246 VDEPAFF-------HGNSLSRNVREYKEHEKFEVIAMNPPYGG---TEQEAVKANFPQAF 295 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + S+ + LF+ + +L+ GRA +VL LF + + ++ Sbjct: 296 ---------RSSETADLFVALITYRLKK----NGRAGVVLPDGFLF--GSDGAKLALKER 340 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 L++ + I+ LP +F T+IAT L + + + EG Sbjct: 341 LIKEFNLHTIIRLPGSVFSPYTSIATNLLFFDKTHPTKD---------VWFYRVGKPEGY 391 Query: 440 KR----RIINDDQRRQILDIYVSREN 461 K + + + + +D + SRE Sbjct: 392 KNFSKTKPLLLEHLQPAMDWWSSREE 417 >gi|332202402|gb|EGJ16471.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317] Length = 487 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ A + L + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINAIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTNDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + D + +RE + ++F +++ LD+ G + E +I Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452 >gi|205825379|dbj|BAG71470.1| Type I restriction-modification system DNA methylase [Staphylococcus aureus] gi|329734476|gb|EGG70788.1| hypothetical protein SEVCU028_0605 [Staphylococcus epidermidis VCU028] Length = 241 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 27/253 (10%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 +W+ A+ L G +++ V L +L+ + + E + + E Sbjct: 9 KLWQAADKLRGSMDASEYKNVALGIIILKYVSDSFEEKYEKLL--NDEYADEEDKDEYL- 65 Query: 74 KVAGYSFYNTSEYSLSTLGST-------NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126 A F+ E + + + I +++ K + + + Sbjct: 66 --AENIFWVPKESRWQYINDNSKKPEIGQIIDKAMTAIEKENESLKGVLHKDYARPELDK 123 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I F+ ++ V+ +Y++ I +F S + A +F TP +V L Sbjct: 124 ----EKLGDIIDLFTFKVGDSESKKQDVLGRVYKYFIAKFASAEGKNAGEFYTPASIVKL 179 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 ++ +YDP G+GG + V + PP L E Sbjct: 180 HVEMI-----------EPYESRIYDPCYGSGGMFVQSERFVERHQRRYGYPPDLQKMAVE 228 Query: 247 LEPETHAVCVAGM 259 E + + Sbjct: 229 QVVEQAELMAGNL 241 >gi|312128928|ref|YP_003996268.1| site-specific DNA-methyltransferase (adenine-specific) [Leadbetterella byssophila DSM 17132] gi|311905474|gb|ADQ15915.1| Site-specific DNA-methyltransferase (adenine-specific) [Leadbetterella byssophila DSM 17132] Length = 475 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 87/545 (15%), Positives = 170/545 (31%), Gaps = 98/545 (17%) Query: 8 AASLANFIWKNAEDLWGD---------FKHTDFGKVILP-FTLLRRLEC------ALEPT 51 +++A I + D + L L+ + L P Sbjct: 1 MSNIAGTIKSIRDIFRKDPGLSGDAQRIEQ-------LGWMIFLKLFDDKDKEKEILNPK 53 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + L + D E +F N TL + + I Sbjct: 54 YRSPIPAELQWRNWAEDDEGITGDELINFVN--NKLFPTLKNLTVAADDRLGI-----TI 106 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + I F T ++ + + I+ + + + IYE +++ Sbjct: 107 RQI-----FDGTNNYMKSGTTFRQAINKLNEIDFT-SSKDHHIFNVIYEEILQGLA--AK 158 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230 + +F TPR V ++ +P + + DP CGTGGFL + H+ Sbjct: 159 KDTGEFYTPRAVTQFIVDMV----------NPKLGEKITDPACGTGGFLVCTIEHLKRQV 208 Query: 231 -GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT- 288 + G EL+P + V ++ +E ++ G +LS++ + Sbjct: 209 KNIDDRKTLQETVTGSELKPLPFMLSVVNLITHDIEV-------PQLENGDSLSREYTSI 261 Query: 289 --GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 R ++NPPFG + + + +D Sbjct: 262 KQKDRVDIIIANPPFGGVVGDGMETNFPLN---------YRTKESAD-------LFLILF 305 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIA 404 GGRA IVL L G + +R+ LLE+ + IV LP +F + T + Sbjct: 306 IQLLKDGGRAGIVLPDGSL-TGD--GVKQRVRQKLLEDCNVHTIVRLPQSVFAPYAT-VN 361 Query: 405 TYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 T L K + + L + + K + I ++ I + +RE Sbjct: 362 TNLIFFEKGKPTKEIWYYEHTLPDGQKAY-------SKTKPIRIEEFEPIKQWWKNREES 414 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT-WRKLSPLHQSFWLDILKP 521 + + + +T + R + + +E +I + + I++ Sbjct: 415 EVAWKVSMQT------IIDRNYDLDVKNPNKKVEEVELNIGKILSILKTENNKVSTIIQE 468 Query: 522 MMQQI 526 + + Sbjct: 469 LENDL 473 >gi|295087099|emb|CBK68622.1| Type I restriction-modification system methyltransferase subunit [Bacteroides xylanisolvens XB1A] Length = 553 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 86/491 (17%), Positives = 168/491 (34%), Gaps = 79/491 (16%) Query: 27 KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 ++ +I L + L L+ +S + +K E+ + Sbjct: 27 DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGNVKWETAYENLSDDERMLIQS 85 Query: 83 TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135 + L + NL + F I E + D ST L++ Sbjct: 86 AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145 Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176 + + S+I+E+LI+ + + + Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP + + LL+ + L YDP+ GTG L + + + Sbjct: 206 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 252 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290 Q++ ++ + L + N QG TL S D + Sbjct: 253 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 306 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343 +F + +SNPPF + ++ + RF G+P SM F+ H+ Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L+ G+ AIV+ + F E++I ++++ ++ V++P+++F T Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 415 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462 + KV LI+A+ L ++ G K+ +NDD+ +I+ + +E Sbjct: 416 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAV 472 Query: 463 K-FSRMLDYRT 472 + FS + Y Sbjct: 473 EDFSVAVSYDE 483 >gi|225860525|ref|YP_002742034.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14] gi|298229258|ref|ZP_06962939.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255150|ref|ZP_06978736.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502306|ref|YP_003724246.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus pneumoniae TCH8431/19A] gi|225727295|gb|ACO23146.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14] gi|298237901|gb|ADI69032.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus pneumoniae TCH8431/19A] gi|327390256|gb|EGE88597.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375] Length = 487 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 162/471 (34%), Gaps = 57/471 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ A + L + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L +P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + D + +RE + ++F +++ LD+ G + E +I Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452 >gi|300933508|ref|ZP_07148764.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100] Length = 315 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 91/241 (37%), Gaps = 26/241 (10%) Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 V H L G E +T + + + L D I+Q Sbjct: 1 MFVQCAKFVERH--HESASRQLSVFGTEKTEDTVPLAKMNLALHGLSGD--------IRQ 50 Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 ++ +D + F Y ++NPPF K+ + R GLPK +G+ L Sbjct: 51 ANSYYEDPHSAVGAFDYVMANPPFNVD-------KIKKDQLAGDKRLPFGLPKADNGNFL 103 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ L GRA V+++S G AG E EIR+ L+E+ ++ +VA+ + Sbjct: 104 WIQQFYAALSPE----GRAGFVMANSA---GDAGYSEKEIRKQLIESGTVDVMVAISPNF 156 Query: 398 FFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 F+ + LW L K R V I+A ++ I + + I+ +Y Sbjct: 157 FYTVTLPVTLWFLDKAKVGTPREDTVLFIDARHIFRQIDRAHRDFTAEQIEFIANIVRLY 216 Query: 457 V 457 Sbjct: 217 R 217 >gi|167761881|ref|ZP_02434008.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC 43183] gi|167700251|gb|EDS16830.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC 43183] Length = 553 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 69/355 (19%), Positives = 135/355 (38%), Gaps = 49/355 (13%) Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + + S+I+E+LI+ + + ++ TP + + LL+ Sbjct: 162 RALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLV 221 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 + L YDP+ GTG L + + + Q++ ++ Sbjct: 222 GDNADLHS------MECYDPSAGTGTLLMALSHQIGE--------ERCTIFSQDISQRSN 267 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWE 306 + L + N QG TL S D ++F + +SNPPF + Sbjct: 268 KMLK-----LNLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLRQFDFVVSNPPFKMDFS 322 Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLANKLELPPNGGGRAAIV 359 ++ + RF G+P SM F+ H+ N L+ G+ AIV Sbjct: 323 DTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKT----GKGAIV 373 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 + + F E++I ++++ ++ V++P+++F T + Sbjct: 374 IPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGTNVSVLFFDK---SATT 428 Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 KV LI+A+ L ++ G K+ +NDD+ +I+ + +E + FS + Y Sbjct: 429 DKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAVEDFSVAVSYDE 483 >gi|169833672|ref|YP_001694009.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae Hungary19A-6] gi|194397534|ref|YP_002037177.1| type I restriction-modification system subunit M [Streptococcus pneumoniae G54] gi|303254229|ref|ZP_07340340.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae BS455] gi|303260622|ref|ZP_07346586.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae SP-BS293] gi|303263067|ref|ZP_07348998.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae SP14-BS292] gi|303265334|ref|ZP_07351243.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae BS397] gi|303267090|ref|ZP_07352960.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae BS457] gi|303269335|ref|ZP_07355107.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae BS458] gi|168996174|gb|ACA36786.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae Hungary19A-6] gi|194357201|gb|ACF55649.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae G54] gi|301801397|emb|CBW34083.1| type I restriction-modification system M protein [Streptococcus pneumoniae INV200] gi|302598832|gb|EFL65867.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae BS455] gi|302635767|gb|EFL66271.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae SP14-BS292] gi|302638212|gb|EFL68683.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae SP-BS293] gi|302641107|gb|EFL71482.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae BS458] gi|302643352|gb|EFL73629.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae BS457] gi|302645106|gb|EFL75344.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae BS397] Length = 487 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ A + L + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPKELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + D + +RE + ++F +++ LD+ G + E +I Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452 >gi|15902493|ref|NP_358043.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae R6] gi|116516554|ref|YP_815962.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae D39] gi|148993496|ref|ZP_01822987.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP9-BS68] gi|149003727|ref|ZP_01828572.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP14-BS69] gi|149005623|ref|ZP_01829362.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP18-BS74] gi|149012612|ref|ZP_01833609.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP19-BS75] gi|149026394|ref|ZP_01836532.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP23-BS72] gi|168485629|ref|ZP_02710137.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC1087-00] gi|168488198|ref|ZP_02712397.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae SP195] gi|225856228|ref|YP_002737739.1| type I restriction enzyme [Streptococcus pneumoniae P1031] gi|237649414|ref|ZP_04523666.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae CCRI 1974] gi|237821513|ref|ZP_04597358.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae CCRI 1974M2] gi|307126723|ref|YP_003878754.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae 670-6B] gi|322387161|ref|ZP_08060771.1| type I restriction-modification system DNA-methyltransferase [Streptococcus infantis ATCC 700779] gi|15458017|gb|AAK99253.1| EcoE type I restriction modification enzyme M subunit [Streptococcus pneumoniae R6] gi|116077130|gb|ABJ54850.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae D39] gi|147758289|gb|EDK65290.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP14-BS69] gi|147762563|gb|EDK69523.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP18-BS74] gi|147763417|gb|EDK70354.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP19-BS75] gi|147927865|gb|EDK78886.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP9-BS68] gi|147929277|gb|EDK80277.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP23-BS72] gi|183571120|gb|EDT91648.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC1087-00] gi|183572897|gb|EDT93425.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae SP195] gi|225724994|gb|ACO20846.1| type I restriction enzyme [Streptococcus pneumoniae P1031] gi|306483785|gb|ADM90654.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae 670-6B] gi|321141690|gb|EFX37185.1| type I restriction-modification system DNA-methyltransferase [Streptococcus infantis ATCC 700779] gi|332074323|gb|EGI84799.1| methyltransferase small domain protein [Streptococcus pneumoniae GA17570] gi|332076346|gb|EGI86809.1| methyltransferase small domain protein [Streptococcus pneumoniae GA41301] gi|332076951|gb|EGI87413.1| methyltransferase small domain protein [Streptococcus pneumoniae GA17545] gi|332204533|gb|EGJ18598.1| methyltransferase small domain protein [Streptococcus pneumoniae GA47901] Length = 487 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ A + L + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + D + +RE + ++F +++ LD+ G + E +I Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452 >gi|152997208|ref|YP_001342043.1| N-6 DNA methylase [Marinomonas sp. MWYL1] gi|150838132|gb|ABR72108.1| N-6 DNA methylase [Marinomonas sp. MWYL1] Length = 545 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 81/458 (17%), Positives = 148/458 (32%), Gaps = 79/458 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 R L+ E AF D + + +F N S L Sbjct: 35 LMFARMLDMQEEAEERKANRTGKAFVRLFPDTKEGQLLRWKNFKNLSGKDLHKHLKNEVY 94 Query: 98 NNLESYIASFSDNAKAIFED--FDFSSTIAR-LEKAGLLYK---ICKNFSGIELHPDTVP 151 + + ED I+ +E A L K + + Sbjct: 95 PYFSKL--GQVADIDQVGEDTPVKAMGHISDYMEDADLEIKNESVLVAALEMVDSLPLNQ 152 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 V +IYE+L+ + + F TPR ++ ++ P T+ D Sbjct: 153 SDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMIEII----------DPQPWDTICD 200 Query: 212 PTCGTGGFLTDAMNHVADCGSH----------------------HKIPPILVPHGQELEP 249 P+CGT GFL M ++ + + + G + + Sbjct: 201 PSCGTAGFLARTMEYLNRKHTSPENIWTDEEGNQHYPGDLLENYREHISDDMFWGFDFDT 260 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGK 303 V M++ + N+ TL+K F L+NPPF Sbjct: 261 TMLRVSSMNMMLHGVNG-------SNVLYQDTLNKSIRENFPQQEENFFDVILANPPF-- 311 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K D+ E + + K +LF+ H+ L+ GGRAA+++ Sbjct: 312 KGSLDETNTNPELLS---------MVKTKKTELLFVAHILRSLK----LGGRAAVIVPDG 358 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 LF + ++R+ L+EN+ +E I++LP+ +F ++T + + + T E +V Sbjct: 359 VLF--GSSKAHQQLRQELIENNQLEGIISLPSGVFKPYAGVSTAILLFTKGGTTE---RV 413 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + + KR + + + D + Sbjct: 414 WFYDLQADGL---SLDDKRTPLKGEGTNDLPDAIAKWK 448 >gi|261378715|ref|ZP_05983288.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685] gi|269144869|gb|EEZ71287.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685] Length = 533 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 93/507 (18%), Positives = 190/507 (37%), Gaps = 73/507 (14%) Query: 1 MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 MTE FT +L + + A G+ +F +I L + L + +R+ Sbjct: 1 MTEQYFTEQTKALIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----------- 106 + ++++ + G + E+S+ L + Sbjct: 59 ENPDEPIEFVNMD----IEGKTAVLKPEHSIKYLSEQQNGADFAKLFDDTLTDIAACNAE 114 Query: 107 -FSDNAKA-----IFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 FS + +FE + R + L FS + I Sbjct: 115 LFSVKTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFA--TI 172 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E+LI+ + S ++ TP V + +L+ + S +YDP+ G+G Sbjct: 173 FEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGT 228 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + + + + + Q++ ++ + L + N+ Q Sbjct: 229 LLMNVAHAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQ 275 Query: 279 GSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 G+T+ K+F + +SNPPF + +D +E E RF G+PKI Sbjct: 276 GNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEDE---ENCERFFAGIPKIKP 332 Query: 334 GSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 LF+ H+ L+ G+AAIVL + F + +IR L+EN + Sbjct: 333 KKKEKMEIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREHLVENKM 386 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 + +V++P+++F T + + + V LI+A+ L T + ++ +++ Sbjct: 387 LAGVVSMPSNIFATTGTNVSILFIDK----ANKDGVVLIDASGLGTKTSVDENQKTVLSR 442 Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRT 472 + ++I + + ++ + FS ++ Y Sbjct: 443 VEEQKICNTFTHKQVVEDFSVVVGYDE 469 >gi|332299058|ref|YP_004440980.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema brennaborense DSM 12168] gi|332182161|gb|AEE17849.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema brennaborense DSM 12168] Length = 509 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 81/514 (15%), Positives = 170/514 (33%), Gaps = 76/514 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + + E + + F A + S+ + L Sbjct: 34 LFLKVFDA-----KEEEWELKKGYVPVIPEGFRFRDWADLRKEDGSKDLANRLTGDKLIQ 88 Query: 99 NLESYIASF----------------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 + + + F SD+ KA+ + ++ L ++ + Sbjct: 89 FVNNTLFPFLQGKPVSVNDKEHLFTSDDPKALIVREFMGESQNYMKDGVKLRQLVNEIAD 148 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 I+ + ++ YE L+ + + +F TPR + + Sbjct: 149 IDFDDAGIK-HDFNDFYETLL-KGLQNGGKATGEFYTPRAITKFICDHV----------D 196 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGML 260 P + + D CGTGGFL +A++H+ K +G E + + + ML Sbjct: 197 PKIGERVADFACGTGGFLAEAISHLMAQAKSPKDITTIQNSIYGIEWKQLPYMLATTNML 256 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + ++ + +I G L+ ++ +++ L NPPFG E Sbjct: 257 LHDID-------NPDIVHGDGLALNVLNLQPKDKYNCILMNPPFG-----------GEFN 298 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 +L F L + F+ + LE GR +VL LFN + + + Sbjct: 299 KSDLQNFPDDLASSESADL-FVARIIYCLEKD----GRCGLVLPDGLLFNSD--NSKVNL 351 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 ++ L+ + I+ LP+ +F T+I T L E ++ D+ +++ Sbjct: 352 KKKLMTECNLHTIIRLPSSVFAPYTSINTNLLFFDKTGKTEEIWFYRM----DMPEGVKH 407 Query: 437 EGKKRRIINDDQRRQILDIYVSREN--GKFSRMLDYRTFGYRRIKVLRPLRMSFILD--- 491 K I + + + + + +R + +TF ++ F LD Sbjct: 408 F-NKTNPIKREDMKCVDEWWNNRVEIADEKESETSTQTFKAKKYTFAEIEERGFDLDLCG 466 Query: 492 --KTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 + L + T + +S + + + Sbjct: 467 YPEEEDVVLTPEETIKNYKERRESLEAKLDEKLA 500 >gi|254779131|ref|YP_003057236.1| Type I restriction enzyme M protein [Helicobacter pylori B38] gi|254001042|emb|CAX28986.1| Type I restriction enzyme M protein [Helicobacter pylori B38] Length = 543 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 84/552 (15%), Positives = 185/552 (33%), Gaps = 85/552 (15%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83 ++ +I L + L + + + D + F K F+ T Sbjct: 32 DGNEYK-IITQCFLYKFLCD-----KFEFFFEQEFPNKTIRDYKDFKKEEKEDFFLTLSD 85 Query: 84 -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127 + LS L + +N L++ S N +F T L Sbjct: 86 KKLPKLSYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESV 145 Query: 128 -----EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173 E++ L KNF+ + + + I+E+L++ + + Sbjct: 146 SPYINEESKRANFTRSLLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGK 205 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 ++ TP + + LL++ P +YDP+ GTG L + + Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290 + Q++ ++ + +++ L R +G+TL + Sbjct: 252 --GTTSCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLINPYHSKDYKG 304 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343 + Y +SNPPF + + + + + F G+P +D S LF H Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L G+ AI++ + F E++I + L++ L+ ++ +P+ +F T Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGIENKIVKHLVDERLVYGVICMPSQVFANTGT 413 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462 + + + +V LI+A+ L K+ + IL+ + ++ + Sbjct: 414 NVSIIFFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRTSDMDLILETFQNKTKKA 470 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 F ++ + + + +++ E + ++ S S + + Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530 Query: 523 MQQIYPYGWAES 534 + + G Sbjct: 531 QEILETLGNLNY 542 >gi|253563526|ref|ZP_04840983.1| type I restriction-modification system methyltransferase subunit [Bacteroides sp. 3_2_5] gi|251947302|gb|EES87584.1| type I restriction-modification system methyltransferase subunit [Bacteroides sp. 3_2_5] gi|301162172|emb|CBW21717.1| putative modification protein of type I restriction-modification system [Bacteroides fragilis 638R] Length = 553 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 85/491 (17%), Positives = 168/491 (34%), Gaps = 79/491 (16%) Query: 27 KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 ++ +I L + L L+ +S + +K E+ + Sbjct: 27 DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 85 Query: 83 TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135 + L + NL + F I E + D ST L++ Sbjct: 86 AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145 Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176 + + S+I+E+LI+ + + + Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP + + LL+ + L YDP+ GTG L + + + Sbjct: 206 YYTPHAIATIMARLLVGDNVDLHS------MECYDPSAGTGTLLMALSHQIGE------- 252 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290 Q++ ++ + L + N QG TL S D + Sbjct: 253 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 306 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343 +F + +SNPPF + ++ + RF G+P SM F+ H+ Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 N L+ G+ AIV+ + F E++I ++++ ++ V++P+++F T Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 415 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462 + KV LI+A+ L ++ G K+ +ND++ +I+ + +E Sbjct: 416 NVSVLFFDR---SATADKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAV 472 Query: 463 K-FSRMLDYRT 472 + FS + Y Sbjct: 473 EDFSVAVSYDE 483 >gi|30250416|ref|NP_842486.1| hsdM; type I restriction modification enzyme methylase subunit [Nitrosomonas europaea ATCC 19718] gi|30181211|emb|CAD86409.1| hsdM; type I restriction modification enzyme methylase subunit [Nitrosomonas europaea ATCC 19718] Length = 553 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 81/557 (14%), Positives = 177/557 (31%), Gaps = 98/557 (17%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS------- 87 I ++RL+ + + E + +E Sbjct: 34 ITYLLFMKRLDEL--DQKRQADARDGWSDPYQSKFEGTWIPPEERNWPVAEQRPIDKRTL 91 Query: 88 ----LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFS 141 + + +++ + F + +F + + + K LL + K Sbjct: 92 RWGEFKRMQAEEMLQHVQGKVFPFLKDLNGAESNFTHHMKNAVFIIPKPALLVEAVKTID 151 Query: 142 GI--ELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 I + D+ + + ++YE L+ + F TPR ++ L L+ Sbjct: 152 EIFEVMEKDSRENGQSFQDIQGDVYEMLLAEIATAGK--NGQFRTPRHIIKLMAELV--- 206 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------A 228 P + + DP CGTGGFL A ++ A Sbjct: 207 -------QPQLGHKIADPACGTGGFLLGAYQYIVTQLAINAGTQTLTPDEDGFTRTSVAA 259 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + G +++ + + +++ +E +I TLSK Sbjct: 260 AFDEKRQAILASSLWGYDIDQTMVRLGLMNLMMHGIE-------EPHIDYKDTLSKSYTE 312 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + L+NPPF DK + + + + +LF+ ++ L+ Sbjct: 313 EAEYDIVLANPPFTGSI--DKGDINENLQL-----------STTKTELLFVENIYRLLKK 359 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GG A +++ LF +G ++R+ L+E+ ++A++ LP+ +F ++T + Sbjct: 360 ----GGTACVIVPQGVLF--GSGKAFKDLRQTLVEHCDLKAVITLPSGVFKPYAGVSTAI 413 Query: 408 WILS-----NRKTEER-RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + + K + V S+ ++ K+ D + I+ Y +R+ Sbjct: 414 LLFTKVWGMKDKVAKPATEHVWFYEMAADGYSLDDKRTKQEGYGD--LQDIIAKYHARDA 471 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + F R + + ++ D L L Q+ D+ Sbjct: 472 TTDTNRTAKC-FMVPRADIESENYDLSLSRYKEDVFEEVQYDAPGVILDRLIQAEVGDVD 530 Query: 520 KPMMQQIYPYGWAESFV 536 + + ++ E Sbjct: 531 EAELAKVQSGIVRELLE 547 >gi|148998187|ref|ZP_01825656.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP11-BS70] gi|168482752|ref|ZP_02707704.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC1873-00] gi|168490596|ref|ZP_02714739.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC0288-04] gi|168492671|ref|ZP_02716814.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC3059-06] gi|168576583|ref|ZP_02722457.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae MLV-016] gi|221231345|ref|YP_002510497.1| type I restriction-modification system M protein [Streptococcus pneumoniae ATCC 700669] gi|225854061|ref|YP_002735573.1| type I restriction enzyme [Streptococcus pneumoniae JJA] gi|225858347|ref|YP_002739857.1| type I restriction enzyme [Streptococcus pneumoniae 70585] gi|307067140|ref|YP_003876106.1| type I restriction-modification system methyltransferase subunit [Streptococcus pneumoniae AP200] gi|147755830|gb|EDK62874.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP11-BS70] gi|172043562|gb|EDT51608.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC1873-00] gi|183574880|gb|EDT95408.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC0288-04] gi|183577008|gb|EDT97536.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae CDC3059-06] gi|183577709|gb|EDT98237.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus pneumoniae MLV-016] gi|220673805|emb|CAR68307.1| type I restriction-modification system M protein [Streptococcus pneumoniae ATCC 700669] gi|225720338|gb|ACO16192.1| type I restriction enzyme [Streptococcus pneumoniae 70585] gi|225722751|gb|ACO18604.1| type I restriction enzyme [Streptococcus pneumoniae JJA] gi|306408677|gb|ADM84104.1| Type I restriction-modification system methyltransferase subunit [Streptococcus pneumoniae AP200] gi|332203680|gb|EGJ17747.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368] Length = 487 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 79/471 (16%), Positives = 163/471 (34%), Gaps = 57/471 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ T + L + + + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 E I S + F ++ LL ++ ++ ++ Sbjct: 92 ELKELEITSIMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L +P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + D + +RE + ++F +++ LD+ G + E +I Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452 >gi|329119168|ref|ZP_08247858.1| type I restriction-modification system DNA-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464727|gb|EGF11022.1| type I restriction-modification system DNA-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 500 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 76/359 (21%), Positives = 136/359 (37%), Gaps = 50/359 (13%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + IF+D ++ LL ++ I+ DT IYE +++ + Sbjct: 109 VRDIFQDAK-----NFMKNGTLLRQLINAVDQIDF-DDTKERHAFGEIYETILK--SLQS 160 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + A +F TPR V ++ +P + T+ D GTGGFL A+N + Sbjct: 161 AGNAGEFYTPRAVTDFMVQVI----------APKLGETVADFAAGTGGFLVSALNALEPQ 210 Query: 231 --GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285 + +G E +P H + + +++ ++ S I+ G+ L + D Sbjct: 211 VKTPKDRETLNQSLYGIEKKPLPHLLGITNLILHDID-------SPRIRHGNALEQNVRD 263 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + L NPP+G K + F L + S+ + LF+ + Sbjct: 264 VQPRDLHDIILMNPPYGGKELELIKQN-----------FPAEL-RSSETADLFIALALYR 311 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404 L+ GGRAAI++ LF + R LL + + IV LP +F T+I Sbjct: 312 LK----AGGRAAIIIPDGFLFGNDTAKTALKTR--LLTDFDLHTIVRLPKSVFAPYTSIT 365 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 T + + +R + D+ S R K + + + L + +R+ K Sbjct: 366 TNILFFNKPAQGQRPSEKLWFYRVDI-PSDRKAFSKTKPMQLEHFSDCLSWWHNRKEIK 423 >gi|257454706|ref|ZP_05619961.1| type I restriction modification system M subunit [Enhydrobacter aerosaccus SK60] gi|257447887|gb|EEV22875.1| type I restriction modification system M subunit [Enhydrobacter aerosaccus SK60] Length = 321 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 59/288 (20%), Positives = 102/288 (35%), Gaps = 44/288 (15%) Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETH 252 P T+ DP CGT GFL A ++ D K G + + Sbjct: 6 MQPKPTDTICDPACGTAGFLVAASEYLNDHYQSEIFANADAAKRYNNGTFFGYDFDSTML 65 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKD 310 + ML+ +E + NI+ +LS+ +F L+NPPF + D Sbjct: 66 RIGSMNMLLHGVE-------NPNIENRDSLSQ-AHADIADKFSLILANPPFAGSLDYDST 117 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 A K +LF+ L+ GGRAA+++ LF + Sbjct: 118 AKNL-----------LATVKTKKTELLFIALFLRMLK----IGGRAAVIVPDGVLF--GS 160 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +R+ L+E +EAI+++P+ +F ++T + I + + KV + Sbjct: 161 SIAHKTLRQELVEKQQLEAIISMPSGVFKPYAGVSTAIVIFTKTMSG-GTDKVWFYDMQA 219 Query: 430 LWTSIRNEGKKRRIINDDQ----RRQILDIYVSRENGKFSRMLDYRTF 473 + KR + D I+ + EN + + F Sbjct: 220 DGY---SLDDKRTPLGDSHEQNNIPHIIARFHHLENEENRSRSEQSFF 264 >gi|303258215|ref|ZP_07344222.1| type I restriction enzyme M protein [Burkholderiales bacterium 1_1_47] gi|302858968|gb|EFL82052.1| type I restriction enzyme M protein [Burkholderiales bacterium 1_1_47] Length = 547 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 103/580 (17%), Positives = 197/580 (33%), Gaps = 95/580 (16%) Query: 1 MTEFTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLL-RRLECAL-EPTRSA--- 54 M+E L + + + G+ ++ I+ L + L ++A Sbjct: 1 MSEIKEKTVQLIDALKATCQAYGLGN-DGNEYK--IITQVFLYKFLNDKFGYEVKNAPGV 57 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS------FS 108 + E+ + + + + + L + NL + + F Sbjct: 58 LSEQLRNSEKWELAYADLSEEERFFLQSAISADVPILEPEHLIANLWNQQSKGDFDLIFD 117 Query: 109 DNAKAI-FEDFDFSSTIARLEKAGLLYK------------------ICKNFSGIELHPDT 149 I F++ D ST L++ + Sbjct: 118 STMTDIAFKNADIFSTQTTANTKIPLFEPLTVFVTDPSQRAAFARALVDKLVNFSFEEAF 177 Query: 150 VPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 S+I+E+LI+ + + ++ TP + + LL+ L Sbjct: 178 GQSYDFFSHIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDATNLHSIE------ 231 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 YDP+ GTG L + + + Q++ ++ + L + Sbjct: 232 CYDPSAGTGTLLMALAHQIGE--------DRCTIFSQDISQRSNKMLK-----LNLLLNG 278 Query: 269 RRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 N QG TL S D ++F + +SNPPF + ++ + Sbjct: 279 LVSSLDNAIQGDTLVSPYHKSDDGKELRQFDFVVSNPPFKMDFSDTREKIAA-----MPV 333 Query: 323 RFGPGLPKI------SDGSM-LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 RF G+PK+ S F+ H+ N L+ GR AIV+ + F E+ Sbjct: 334 RFWAGVPKVPKKKKESMAIYTCFIQHVLNSLKD----NGRGAIVVPTG--FITAKSGIEN 387 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 I + L+++ LI V++P+++F T + + E KV LI+A+ L + Sbjct: 388 RILKKLVDDKLIYGCVSMPSNVFANTGTNVSVLFFDKSGSSE---KVILIDASKLGEEYK 444 Query: 436 -NEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF----------GYRRIKVLRP 483 + G K+ +N + +I+ + R N + FS +D+ Y IK+ Sbjct: 445 DSNGLKKVRLNPVEVNKIITTFQKRLNVEDFSVAVDFNEIKEKGYSLSAGQYFEIKIEYE 504 Query: 484 LRMSFILDKTGLARLEADIT-WRKLSPLHQSFWLDILKPM 522 K + E+++T S Q L+ LK + Sbjct: 505 DISEEEF-KNRMKEYESNLTDLFNKSNDLQKKILESLKNL 543 >gi|189345678|ref|YP_001942207.1| N-6 DNA methylase [Chlorobium limicola DSM 245] gi|189339825|gb|ACD89228.1| N-6 DNA methylase [Chlorobium limicola DSM 245] Length = 846 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 75/410 (18%), Positives = 139/410 (33%), Gaps = 62/410 (15%) Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 Y + + E + N Y + + + + +S+ + E+ Sbjct: 37 YKFMDDMDAESEELGGKRKFFTGNFVRYGWAKFMDRSLGGH--EMLGLYSEGIAKMPENP 94 Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + K L + K F I + + +E+L+ GS+ A Sbjct: 95 GIPALFRDIFKNAYLPYRDPETLKAFLKIIDEFTYDHSERLGDAFEYLLSVLGSQG--DA 152 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231 F TPR ++ +L+ P T+ DP CGT GFL A H+ Sbjct: 153 GQFRTPRHIIDFMVEILV----------PQKNETILDPACGTAGFLISAYKHILRTNTDT 202 Query: 232 -------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 K G ++ P+ + + + + +I + TLS Sbjct: 203 DGHSTLTPDEKGRLARNFKGYDISPDMVRLSLVNLYLHGF-------TDPHIFEYDTLSS 255 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + + L+NPPF + + RF + +LF+ ++A Sbjct: 256 EERWNEFADVILANPPF-MSPKGGIKPHK---------RFSIQAKRS---EVLFVDYMAE 302 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTN 402 L GRA I++ +F + E +R+ L+EN L+ A+++LP F + Sbjct: 303 HLTPA----GRAGIIVPEGIIFQSQMAYKE--LRKMLVENSLV-AVISLPAGCFNPYS-G 354 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 + T + IL + D + G +RR I + Q+ Sbjct: 355 VKTSILILDKSLARQSDTIAFFKVENDGF----GLGAQRRAIEKNDLPQV 400 >gi|229827684|ref|ZP_04453753.1| hypothetical protein GCWU000182_03073 [Abiotrophia defectiva ATCC 49176] gi|229788144|gb|EEP24258.1| hypothetical protein GCWU000182_03073 [Abiotrophia defectiva ATCC 49176] Length = 237 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 27/223 (12%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + IW A L G+ +++ V+L L+ + + +A+ E+ Sbjct: 1 MANKNTAVIGFEKQIWDAACVLRGNMDASEYKSVVLGLIFLKYISDRFKDKYNALVEE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113 G + + + F+ + S + + ++ I + K Sbjct: 59 ---GDGFEEDIDEYTSEGIFFVPAGAHWSEIAAKAHTPEIGKVIDDAMRAIEKENKRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I + ++ YE+ + F + + Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIRMTKHGSEKDILGRTYEYCLSMFAEQEGKR 171 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +F TP VV +L +YDP CG Sbjct: 172 GGEFFTPSCVVRTLVEIL-----------KPFKGRVYDPCCGF 203 >gi|46143840|ref|ZP_00133970.2| COG0286: Type I restriction-modification system methyltransferase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 252 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 27/211 (12%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKE 315 M + + D +I G TL K F + F +SNPP+ KW D D Sbjct: 1 MNMFLHNINYDKF-----DITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDGDPT--- 52 Query: 316 HKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 RF P L S F++H + L + GRAAIV + G A Sbjct: 53 --LINDERFAPAGVLAPKSKADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA--- 103 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 E +IR++L++N+ +E +++L +LFF T+IA + +LS KT+ K Q I+A+ ++ Sbjct: 104 EQKIRQYLVDNNFVETVISLAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKK 160 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 N ++ D+ +IL ++ + + Sbjct: 161 ETN----NNVLTDEHIAEILKLFGDKADVDH 187 >gi|90579610|ref|ZP_01235419.1| putative type I restriction enzyme M protein [Vibrio angustum S14] gi|90439184|gb|EAS64366.1| putative type I restriction enzyme M protein [Vibrio angustum S14] Length = 525 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 76/464 (16%), Positives = 150/464 (32%), Gaps = 108/464 (23%) Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-IASFSDNAKA 113 + + E G F + N K Sbjct: 35 YLMYARMLDMNERNDEKRSARTGKPF----NRRFADDKQHIRWENFRHLGAEKLYPLVKD 90 Query: 114 -IFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 +F +F ++ L +K LL K + S + L V ++YE Sbjct: 91 EVFPNFKDLTSDDTLFADFMKDAQLMIQKPSLLVKAVELVSELPLENK----DVKGDLYE 146 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ + + F TPR ++ +L + + DP CGTGGFL Sbjct: 147 YLLSKLTTAG--INGQFRTPRHIIRAMIEMLDVEE----------THRICDPACGTGGFL 194 Query: 221 TDAMNHVADCGSHHKIPPILV-------------------------------------PH 243 + ++ + S + H Sbjct: 195 SSTYEYLLEKYSSPEGTEKEQAFDKEGKPVLDVHGNPVFNYLYAGDLLEKRTHIDYDMFH 254 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKR---FHYCLS 297 G + + V +++ ++ +I TLS+ + F + F L+ Sbjct: 255 GFDFDSTMLRVAAMNLVMHGVK-------QPDIHYQDTLSQSFIERFPDEAKNGFDIILA 307 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF K D++ V+ + K +LF+ + L++ GGR A Sbjct: 308 NPPF--KGSLDEEDVDPAILK---------VVKTKKTELLFVALIQRMLKV----GGRTA 352 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 ++ LF + +R+ L+E++ +EA+++LP+ +F ++T + I + + Sbjct: 353 TIVPDGVLF--GSSKAHHTLRKHLVEDNQLEAVISLPSGVFKPYAGVSTAILIFTKGGS- 409 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 V + ++ KR I D+ ++ Y + + Sbjct: 410 --TNNVWFYDVQADG---KSLDDKRTPIKDNDLPDLVKQYKAYQ 448 >gi|237654635|ref|YP_002890949.1| N-6 DNA methylase [Thauera sp. MZ1T] gi|237625882|gb|ACR02572.1| N-6 DNA methylase [Thauera sp. MZ1T] Length = 356 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 14/159 (8%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E+AGLLY + + F+ IE HP V + M ++E LIR+F +E A + TPR+++ L Sbjct: 58 EQAGLLYLVVEKFAHIEPHPRRVDNVHMGLVFEELIRKFAEISNETAGEHFTPRELIRLM 117 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTC--GTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 + L DD PG++RT+YDPT GTG L+ A H+ + ++ GQ Sbjct: 118 VSPLFIEDDEALS-KPGIVRTIYDPTAGTGTGRMLSVAGEHLHEIKPGARL----TMFGQ 172 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 EL PE++A+C A MLI+ + I G+TLS+ Sbjct: 173 ELNPESYAICKADMLIKGQDVRS-------IVLGNTLSE 204 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 8/87 (9%) Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646 L + ENVP E +Q +F REV H PDA+ID R+GYEI NR FY ++P Sbjct: 278 LRDAENVPLFEDVQAWFEREVLSHAPDAWIDHDK--------TRIGYEIPLNRHFYVFEP 329 Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673 R L +IDA+LK +I ++E +A Sbjct: 330 PRPLAEIDADLKRSMDRIKQMIEGLAG 356 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 6/103 (5%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + +L+ IW A+ L GDFK +++G+VILPFT+LRRL+C L PT++AV ++ + Sbjct: 2 NQQALSALIWSVADLLRGDFKQSEYGRVILPFTVLRRLDCVLAPTKAAVLVEHRDKEQAG 61 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 + + F + + + + + E I F++ Sbjct: 62 -----LLYLVVEKFAHIEPHP-RRVDNVHMGLVFEELIRKFAE 98 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 8/105 (7%) Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILK 520 +R+ + FGYR I + RPLR D + E W + L + W+D K Sbjct: 257 PIARVFRNQDFGYRTITIERPLR-----DAENVPLFEDVQAWFEREVLSHAPDAWIDHDK 311 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 + +V E + +K S I I Sbjct: 312 TRIG-YEIPLNRHFYVFEPPRPLAEIDADLKRSMDRIKQMIEGLA 355 >gi|15900423|ref|NP_345027.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae TIGR4] gi|111657646|ref|ZP_01408378.1| hypothetical protein SpneT_02001156 [Streptococcus pneumoniae TIGR4] gi|14971982|gb|AAK74667.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae TIGR4] Length = 487 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 146/430 (33%), Gaps = 52/430 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ A + L + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSREN 461 + D + +RE Sbjct: 407 VRDWWENREE 416 >gi|317485044|ref|ZP_07943926.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6] gi|316923579|gb|EFV44783.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6] Length = 486 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 83/492 (16%), Positives = 167/492 (33%), Gaps = 75/492 (15%) Query: 60 LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT---RNNLESYIAS-FSDNAKAI- 114 + D E+ Y T ++L ++ K + Sbjct: 37 KIYDDREYDWEALEH--DYVSIIPDPCRWRNWADTGKALKGDDLIRFVDGMLLPTLKDLP 94 Query: 115 ----------FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 F+ ++ L ++ + + D +IYE +++ Sbjct: 95 IPPGCPLRKSIVKTVFTDIHNFMKDGVQLRQLLTEINECDF-NDPQEAHAFGSIYESILK 153 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + +F TPR + + + D CGTGGFL A Sbjct: 154 LL--QSAGSSGEFYTPRALTDFMARHVGLKLGD----------KVADFACGTGGFLNSAR 201 Query: 225 NHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + HG E +P + +CV +L+ ++ I+ G++L Sbjct: 202 AWLEGQAKTNAQREILARSFHGTEKKPLPYLLCVTNLLLNGVD-------EPLIRYGNSL 254 Query: 283 SK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 +K D +F L NPP+G ++ +++ + + ++ + LFL Sbjct: 255 TKSTGDYTEADKFDVVLMNPPYGGS---EQLTIQQNFPSNM---------RSAETADLFL 302 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + + +L+ GRAA+V+ LF G +EI+R LL N + IV LPT +F Sbjct: 303 ILIMARLK----ATGRAAVVIPDGFLFGGGNK---TEIKRELLSNFNLHTIVRLPTSVFS 355 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIYV 457 T+IAT + + T + EG K + D+ Sbjct: 356 PYTSIATNVLFFDGNGPTKE---------TWFYRVDMPEGYKHFSKTKPMLLEHLADL-D 405 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-ITWRKLSPLHQSFWL 516 + + + ++ R+ + + D G A+ + + + +L +++ Sbjct: 406 AWWDKREPLEVNGSDKA-RKYSKEELEALQYNFDLCGFAQEDEEILPPAELIAHYKAERA 464 Query: 517 DILKPMMQQIYP 528 K M + + Sbjct: 465 RHEKIMDEALGK 476 >gi|331002084|ref|ZP_08325603.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411178|gb|EGG90594.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon 107 str. F0167] Length = 651 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 45/272 (16%) Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G L + A + + QE T+ + +++R + L Sbjct: 14 GSGSLLINIGKTAAKYLDDAN---RIQYYAQEYNLNTYNLTRMNLVMRGI-------LPA 63 Query: 275 NI--QQGSTLSKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 NI + G TL +D + +SNPP+ ++W+ + + Sbjct: 64 NIFTRNGDTLKEDWPYFDESDPHSTYEPLYVDAVVSNPPYSQRWDPTGKDSDPRYVR--- 120 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 G+ S FL+H L+ G IVL LF G E IR+ L Sbjct: 121 ----YGIAPKSKADYAFLLHDLYHLQP----NGIMTIVLPHGVLFRGGE---EGNIRKNL 169 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 +E + I+AI+ LP ++FF T I T + +L ++ + +I+A+ + + K Sbjct: 170 IEQNNIDAIIGLPANIFFGTGIPTIVMVLRQKRE---NTDILIIDASKGF----KKDGKN 222 Query: 442 RIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 + R+I+D R+N + +S+++ + Sbjct: 223 NKLRACDIRKIVDTIKERKNVEKYSKVVSLKD 254 >gi|315154176|gb|EFT98192.1| N-6 DNA Methylase [Enterococcus faecalis TX0031] Length = 411 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 77/420 (18%), Positives = 148/420 (35%), Gaps = 80/420 (19%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRDVV 184 L+ + K+ + F IE ++ F E + + + TP V Sbjct: 28 LKNKDAVRKLFEKFLAIETDLS----------FDWFHEYFQEEHADRKQKKQDFTPNSVG 77 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + + +L G + D GTGG + P Sbjct: 78 KVLSLIL------------GHSESTLDVAAGTGGLTI-------KKWWNDGQPTNNEYLC 118 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-----------------KDLF 287 +EL + ++IR ++ + G +LS + Sbjct: 119 EELSDRAVPFLLFNLMIRGMK--------AQVIHGDSLSGVTKKVYKISDYELTEINEEL 170 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANK 345 ++ +SNPP+ KW+ ++ RF L + FL+H + Sbjct: 171 AIEKVGAVISNPPYSAKWDASPTLLD-------DPRFSHYEKLAPKTKADFAFLLHGFYR 223 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ G A+VL LF G A E IR+ LLE+ I+A++ LP +LFF T+I T Sbjct: 224 LKDS----GTMAVVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGLPANLFFGTSIPT 276 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 + +L + V I+++ + GK + ++DD +I+ Y R++ + + Sbjct: 277 VIIVLKKNRQTR---DVMFIDSSKEFDK----GKNQNSLSDDHINKIIHTYKERKDIEKY 329 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + Y + P + ++ + E RK + +++ + + Sbjct: 330 AHLASYDEITENDFNLNIPRFVDTFEEEEPINPFELLADIRKTNEELAKAEKELVSMLDE 389 >gi|22477129|gb|AAM97371.1| DNA methylase [Streptomyces collinus] Length = 393 Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 124/321 (38%), Gaps = 50/321 (15%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L+ + + I+ + + + +R ++ +EG+ + TP D+ L + Sbjct: 12 LHALVQAIGSIQ---------RVGPLLDQCLRDLSADQAEGS-RYFTPDDMARLMVGAAV 61 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 P + DP CG+GG L ++ +V + + + P + G+E T Sbjct: 62 ----------PRDRHRVLDPVCGSGGLLVESHRYVRE---NVGLDPTMSLQGKEQHAHTS 108 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 V +R + + G +L+ + L+N PF ++ +D Sbjct: 109 QVARMNFAVRGITAHVFP-------PGDSLADP--EPEPHDIILANLPFNQRDWAPEDKT 159 Query: 313 EKEHKNGE-----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 E++ + R+ P + ++ H+A+ L GRA +++ S Sbjct: 160 ERDVRRSPSPIPVDPRWPEESPSKGSANSAWIQHIAHALAPA----GRAVFLMADSV--A 213 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERRG 420 +R LL +DL+E ++ALP +F + LW+L+ K+ +RR Sbjct: 214 NSRQPVTRSVRERLLRDDLVECVIALPPRVFGHSKAPACLWVLNKDKSARPGWGARDRRR 273 Query: 421 KVQLINATDLWTSIRNEGKKR 441 +V INA + + +R Sbjct: 274 QVLFINARRAFEPVPKSRARR 294 >gi|303243808|ref|ZP_07330148.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1] gi|302485744|gb|EFL48668.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1] Length = 500 Score = 143 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 81/497 (16%), Positives = 164/497 (32%), Gaps = 99/497 (19%) Query: 17 KNAEDLW---GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 + L G D+ + + L+ E E+ G N + + Sbjct: 13 SACDILRKDDGTSGAMDYMEQLSWLLFLKVFESV-----EKELEETALMNGENYNP---I 64 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-------FEDFDFSST--- 123 Y + N ++ + + N + ++ F Sbjct: 65 IDKKYRWSNWAKKDWIG-KPKECLKDFVDNVDEEIKNIDDLDNTLVYFIDNILFPHLRSL 123 Query: 124 -----------------IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 +++ L + I D V+S IYE L+ Sbjct: 124 EGTPEREKIASIFKEISGNKMKSTYNLVDVINKIDNINT-DDYEDTHVLSQIYEELLLNM 182 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 G+E +F TPR ++ ++ P + T++DP G+ GFL + + + Sbjct: 183 GNEAG-WGGEFYTPRPIIRFIIKVI----------KPKIGETVFDPFGGSAGFLIETLKY 231 Query: 227 VADCGSHHKIPPIL-----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + + + +G E +P + + M++ + L+ N + ++ Sbjct: 232 IQEELGNITVQENDILMHKTLYGHEKKPFPYLLGTMNMVLHGI-------LTPNYYRRNS 284 Query: 282 LSK-DLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 L D+ +++ ++NPPFG +E+K + F + L Sbjct: 285 LGDEDIHNVPESEKYDIIITNPPFG----------GRENKKVQDN-FPHKIQST---EAL 330 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 L ++ KL+ GGRA ++L + G IR LL + AIV+LP + Sbjct: 331 ALQYIMRKLK----NGGRAGVILPEGQIMFGGKK--FKSIREELLNKFNVFAIVSLPQGV 384 Query: 398 F--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 F + T + + + + KK+R I D+ + +L+ Sbjct: 385 FSQMGAGVKTNIVFFEKTGSTKEI---------WYYELEGKYTKKQR-IKDEDFKDVLNK 434 Query: 456 YVSRENGKFSRMLDYRT 472 +RE + S ++ Sbjct: 435 IKNREISENSWIVSIDE 451 >gi|147679037|ref|YP_001213252.1| hypothetical protein PTH_2702 [Pelotomaculum thermopropionicum SI] gi|146275134|dbj|BAF60883.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 251 Score = 143 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 25/218 (11%) Query: 108 SDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 + + IFE DF++ + LY + + S L V ++ YE+L+R+ Sbjct: 8 NPKLQGIFEQVDFNARAAGQPIIDNDRLYNLIQILSRHRLGLKDVEADILGRAYEYLLRK 67 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + A +F TP +V L +L P +YDP CG+GG L ++ Sbjct: 68 FAEGQGQSAGEFYTPSEVAWLMALIL----------RPRPGDEIYDPACGSGGLLIKSVL 117 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 D + +GQE+ T A+ I LE++ I+ G T+++ Sbjct: 118 ACRDAYGTDSQTAPVKIYGQEINYTTFAMAKMNAFIHDLEAE--------IRLGDTMARP 169 Query: 286 LFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 FT + F +NP + + + E+ Sbjct: 170 AFTNPDGSLRVFDKVTANPMWNRDTINPFNHPEEIFDL 207 >gi|148983890|ref|ZP_01817209.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP3-BS71] gi|147924037|gb|EDK75149.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae SP3-BS71] gi|301799576|emb|CBW32129.1| type I restriction-modification system M protein [Streptococcus pneumoniae OXC141] Length = 496 Score = 143 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 162/480 (33%), Gaps = 66/480 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ A + L + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L+ + + + F ++ LL ++ ++ ++ Sbjct: 91 KELKELEITSNMPIRKTIIKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKDLF------------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 I G+TL K++ ++F + NPPFG Sbjct: 251 IVHGNTLEKNVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNN 299 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F L + S+ + LF+ + +L+ GR ++L LF + +++ L++ Sbjct: 300 FPAEL-RSSETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVD 351 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + I+ LP +F T I T + K E +L + D + + K + Sbjct: 352 EFNLHTIIRLPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTK 406 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + + + D + +RE + ++F +++ LD+ G + E +I Sbjct: 407 PMKSEHFNPVRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 461 >gi|300956332|ref|ZP_07168630.1| N-6 DNA Methylase [Escherichia coli MS 175-1] gi|300316844|gb|EFJ66628.1| N-6 DNA Methylase [Escherichia coli MS 175-1] Length = 154 Score = 143 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 23/164 (14%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCL 296 GQE T ++ M + + + I+ G T+ K F Sbjct: 1 MFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDKNGDLMLFDIVT 53 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF E +N + GRF G+P + G F+ H+ L+ G GR Sbjct: 54 ANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIETLKP---GTGRM 105 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 +V+ LF G S E +IR+ L++ +L++A++ LP LF+ Sbjct: 106 GVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYG 146 >gi|182683454|ref|YP_001835201.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae CGSP14] gi|182628788|gb|ACB89736.1| type I restriction-modification system, M subunit [Streptococcus pneumoniae CGSP14] Length = 487 Score = 143 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 148/430 (34%), Gaps = 52/430 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E ++Y + + ++ T + L + + + Sbjct: 33 LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 E I S + F ++ LL ++ ++ ++ Sbjct: 92 ELKELEITSIMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + +F TPR +L +P + ++ D CGTG Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197 Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 GFLT +N + S G E + H + V + + ++ Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250 Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G+TL K+ ++F + NPPFG F L + S Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + + LF+ + +L+ GR ++L LF + +++ L++ + I+ Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LP +F T I T + K E +L + D + + K + + + Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406 Query: 452 ILDIYVSREN 461 + D + +RE Sbjct: 407 VRDWWENREE 416 >gi|184155502|ref|YP_001843842.1| putative type I site-specific deoxyribonuclease [Lactobacillus fermentum IFO 3956] gi|183226846|dbj|BAG27362.1| putative type I site-specific deoxyribonuclease [Lactobacillus fermentum IFO 3956] gi|299783284|gb|ADJ41282.1| Putative type I site-specific deoxyribonuclease [Lactobacillus fermentum CECT 5716] Length = 457 Score = 143 bits (361), Expect = 9e-32, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 132/359 (36%), Gaps = 47/359 (13%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + I +++ + I + R+ K L ++ L + + Sbjct: 77 AVIEDLNESIQRIL--------LLRIGKDKQL-QVFNEICESTLRLVRQQSDRF-VLLKA 126 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + S TP + L L A +YD T G GG L Sbjct: 127 MQAAYVDLESRLNGRTNTPDQINVLMAQL------ANLSFDGDEPVRIYDSTSGWGGSLL 180 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + + + GQEL + + C M++ L+ D N G Sbjct: 181 EMRRVIPN-------SRKVRLLGQELNAKAYLFC--EMVLGLLDDDNTSHALNN---GDA 228 Query: 282 LSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 L D F +++PP+ +W D + + + G + G LP S F++ Sbjct: 229 LVADWPFGDSGADVIINDPPYSMRWNPDPNLL----ERGIYHKIGV-LPPKSRADFAFVL 283 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H L N G I L LF G S E++IR++LLE + IEA++ LP +L Sbjct: 284 HGLAHL----NDNGTMVIQLPHGVLFRG---SAEAKIRQYLLERNYIEAVIGLPANLQST 336 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T I T + +L + + V I+A+D + + R +++ +I++ Y Sbjct: 337 TAIPTMILVLRKNRKRK---DVLFIDASD---DEVKKARSRDLLSTSAVNKIVETYHKF 389 >gi|229824144|ref|ZP_04450213.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271] gi|229786498|gb|EEP22612.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271] Length = 424 Score = 143 bits (361), Expect = 9e-32, Method: Composition-based stats. Identities = 88/444 (19%), Positives = 152/444 (34%), Gaps = 58/444 (13%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 I E+++ S + L + I F +E ++ F E Sbjct: 9 IIGIAENYELPSKLLDLMLSNQRENIFNQFLELEQDLS----------FDWFTDYFQQEH 58 Query: 171 SEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + TP++V HL ++ G ++ D GTGG N Sbjct: 59 GDRDKLKQDFTPKEVAHLVNSI------------SGPATSVADICAGTGGLTIKKWN--- 103 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ---GSTLSKD 285 + + + + + + M + D I + G S Sbjct: 104 EQREAECFYYMEEFASRAIPILIFNIAIRNMNAEIVHCDALTQEVFGIYRLIPGDRFSTV 163 Query: 286 LFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFL 339 +R F + NPP+ W DK + RF G G+ S F+ Sbjct: 164 EKVTERTGRTDFDAVIMNPPYSLTWSGDKSLIN-------DPRFSGYGVAPKSKADYAFI 216 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G +L LF G A E EIR L+ +E ++ LP +LF Sbjct: 217 LHGLAILKET----GTLVAILPHGVLFRGAA---EGEIRTELIRRRQLETVIGLPDNLFL 269 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I L IL ++ +E V I+A+ + GK + ++D+ IL Y R Sbjct: 270 NTSIPVALLILKKKREDE---DVYFIDASKEFIK----GKAQNNLSDEHVDNILTAYRLR 322 Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 N KFS + + P + + + E + + Q+ L++ Sbjct: 323 RNIDKFSNLAKPHEIESNDYNLNIPRYVDTFEPEPIIPMQELLDSLIQTEREIQTTELEL 382 Query: 519 LKPMMQQIYPYGWAESFVKESIKS 542 L M Q + A++ KE ++ Sbjct: 383 LNFMRQLVGTTPEAQNQQKECVEK 406 >gi|313123146|ref|YP_004033405.1| type i site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279709|gb|ADQ60428.1| type I site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 491 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 83/485 (17%), Positives = 161/485 (33%), Gaps = 77/485 (15%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + R V E S I + + T L Sbjct: 35 MLFLKVYDD-----REKVWELTNDDYESIIPAGMHWRE-----WATDNKDGKALTGDELL 84 Query: 98 NNLESYIASFSDNA---------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + + N KAI +D F ++ LL ++ + D Sbjct: 85 DFVNNKLLPALKNITVTKDTPISKAIVKDA-FIDANNYMKNGVLLRQVVNVIDEQDFT-D 142 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++IYE ++++ S + +F TPR + L P + Sbjct: 143 PEDRHMFNDIYEGILKQLQSAGNS--GEFYTPRALTDFIAETL----------KPKLGEK 190 Query: 209 LYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 + D CGTGGFLT +N + + G E + + + + V +L+ ++ Sbjct: 191 MADLACGTGGFLTSTLNLLKPQIKTVEDQKKYNEAVFGIEKKGQPYILAVTNLLLHDVD- 249 Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + +I G++L K+ ++F + NPPFG + D ++K Sbjct: 250 ------NPDIIHGNSLEKNITEYTEKEKFDIIMMNPPFGG---AELDTIKKNFPTDLQ-- 298 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 S+ + LF+ + +L+ GR ++L +F+ + I++ L Sbjct: 299 -------SSETADLFMDLIMYRLKD----NGRVGVILPEGFMFSTD--GAKRNIKQKLFN 345 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEG-- 438 + + I+ LPT +F T +AT + ++ + + + ++ R Sbjct: 346 DFNVHTIIRLPTTIFSPYTTVATNIIFFEKTHKTQKTWFYRLDMPDGYKHFSKTRPMKLE 405 Query: 439 ---------KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 R I D+ Y E K LD F ++L P + Sbjct: 406 HFDPVREWWNNRHEIQDEDGNYKSKAYSLEEISKNDYDLDLCGFPTETEEILPPDELMVK 465 Query: 490 LDKTG 494 Sbjct: 466 YKSER 470 >gi|227891952|ref|ZP_04009757.1| restriction-modification protein [Lactobacillus salivarius ATCC 11741] gi|227866286|gb|EEJ73707.1| restriction-modification protein [Lactobacillus salivarius ATCC 11741] Length = 767 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 67/446 (15%), Positives = 151/446 (33%), Gaps = 76/446 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + E +++++L +++ G + N ++ Sbjct: 186 LLFLKLVSDLNEERNYNIKDEFL--------WDTYKTYEGNALINYINNTVI----DGLN 233 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 +S S+ +F I L +I + + + + Sbjct: 234 KKFDS-----SEEDNGLFTPLHIKDPIK-------LKEIVDKLDTLNF--KKIDTDIKGD 279 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E+ I+++ + + ++ TPR +V ++ P +YDP CGTG Sbjct: 280 AFEYFIQKYN-QTNNDLGEYFTPRHIVRFLNDIV----------KPTYGDKIYDPFCGTG 328 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELE-------PETHAVCVAGMLIRRLESDPRR 270 G L A + + + +T + M++ Sbjct: 329 GMLIVAFERILNELEERGKLDEDTLTNLREQTIWGGEISDTARIAKMNMILSG------- 381 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 D NI Q + +++ +SN PF + ++ ++ + P Sbjct: 382 DGHSNIMQHDSFMNP--VSDKYNIVISNIPFNMEVTNEQSSLYE--------------PD 425 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 I G+ + ++H+ L+ RAAI++ + L ++R+ ++ + + I Sbjct: 426 IKKGNAVAILHILKALKNNNPY-SRAAIIVPDAVLN----DKSMKDLRKNIVSSGQLLGI 480 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 V+LP+ +F T T + I KT + + + ++ +K IND Sbjct: 481 VSLPSKVFLPYTEAKTSILIFG-SKTNIPTENIFVYKVKNDGYTLTTRRRKISGIND--L 537 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGY 475 + I+ +++ L+Y Y Sbjct: 538 DNFISIHEEMLETNYNKKLNYDNLFY 563 >gi|299065124|emb|CBJ36288.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum CMR15] Length = 481 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 113/339 (33%), Gaps = 57/339 (16%) Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + A ED F + LL ++ + I L V +Y Sbjct: 98 FLQALGDNDPAAGRHLEDIRF-----TITTPALLARVVQLLDAIPL----HRRDVRGAVY 148 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E L+ R ++ + F TPR +V L P TL DP GT G Sbjct: 149 ESLLGRIA--LTGRSGAFHTPRHIVRFMVEL----------TRPDPSDTLCDPAAGTCGI 196 Query: 220 LTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDL 272 L A ++ HG E++ + +L+ +E Sbjct: 197 LAAAGEYLRREHPGLLHDARQSAHFHHGMFHGHEIDRAMLRIGSMNLLLHGVEG------ 250 Query: 273 SKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 +++ G L+ + Y L++PPF ++ + L + Sbjct: 251 -ADLRHGDALAG-AHADEAGAYSLILTHPPFTGDVDRGSADPDLLR-----------LVR 297 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +LFL L GGRAA+++ LF +G +RR L+E+ +E + Sbjct: 298 TRKTELLFLARCLRLLRP----GGRAAVIVPDGVLF--GSGIAHRTLRRMLVEDHQLEGV 351 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428 + LP +F I T + + + T G V + Sbjct: 352 IKLPCGVFRPYAGIGTAILLFTRTDTG-GTGHVWFYDLR 389 >gi|332292347|ref|YP_004430956.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5] gi|332170433|gb|AEE19688.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5] Length = 552 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 82/546 (15%), Positives = 170/546 (31%), Gaps = 124/546 (22%) Query: 1 MTEFTGSAASLANFIWKNAEDLWG-----DFKH-TDFGKVILPFTLLRRLECALEPTRSA 54 M + +L +W W + I ++RL+ ++ Sbjct: 1 MLQNNPKLKALIVSLW---NTFWSGGVSNPIDAISQ----ITYLLFIKRLDEL--ESKRE 51 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-- 112 ++ + + S Y + + + E+ K Sbjct: 52 RDAEWNGEEYESKFDGEYTPWIDESSYRPKPDTTEEEKAELFKKREEALAPRPKKELKWS 111 Query: 113 ----------------AIFEDFD------------FSSTIARLEKAGLLYKICKNFSGI- 143 +F + + ++K LL + K I Sbjct: 112 FFKSMPADDMLLHFRNNVFPHIKDLNDETSSFTKYMKNAVFIIQKPSLLVEAVKKVDEIF 171 Query: 144 -ELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 E+ D + ++YE L++ + F TPR ++ L L Sbjct: 172 IEIEEDAKDGKQSFQDIQGDVYEMLLKEIATAGK--NGQFRTPRHLIKLLAEL------- 222 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------------CG 231 P + + DP CGT GFL A N++ Sbjct: 223 ---TEPKLGHKIADPACGTSGFLLGAYNYILSDLVRKKEPELLQIDEDGFERATISSVLT 279 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +K +G +++ + + +++ ++ + +I+ TLSK+ Sbjct: 280 EENKQILNDSFYGFDIDTTMVRLGLMNLMMHGID-------NPHIEYKDTLSKNYNESGN 332 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L+NPPF K D + G +LFL ++ L Sbjct: 333 YDIVLANPPFTGKL----DKGDVNPDLGID---------TGSTELLFLARISKMLR---- 375 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410 GG+AA+++ LF A + R LL ++ +EA+++LP F T + T + + Sbjct: 376 AGGKAAVIIPEGVLF--GASKAQKATREILLRDNQLEAVISLPAGAFKPYTGVKTAILVF 433 Query: 411 SNRKTEE---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + + + KV + + RR + ++ + Y++R++ +++ Sbjct: 434 TKVEEDSKKWHTDKVWFYVLENDGY---SLDDNRRKLKENPLPLVKSNYIARKSAEYTDR 490 Query: 468 LDYRTF 473 F Sbjct: 491 -KNHFF 495 >gi|315506709|ref|YP_004085596.1| n-6 DNA methylase [Micromonospora sp. L5] gi|315413328|gb|ADU11445.1| N-6 DNA methylase [Micromonospora sp. L5] Length = 898 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 59/336 (17%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L ++ I +++HL+ + + + F TPR VV L +L Sbjct: 96 LARVIALLDHIPEGDRDGER----ELFDHLLDQ-APRYGK--QHFGTPRPVVTLMVEML- 147 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 +P ++ DP CG GG L A ++V P +G E Sbjct: 148 ---------APSPEDSVADPWCGPGGLLAAASDYVRR---TAGENPRQKFYGAERNQALM 195 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + +L+ + + Q L RF ++NPPFG Sbjct: 196 RLAGMNLLLHGV-------GEAELTQRDPLEAPG----RFSVVMTNPPFGG--------- 235 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ ++ G GL + + +L L+ A++L + GG+AA+++ S LF + S Sbjct: 236 RRDIESVPAG--LAGLVRTTKTELL-LLVAASRL---LDAGGKAAVIVPQSVLF--GSSS 287 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431 E+RR L+E ++A+V LP F ++ L + + K + R G V +A Sbjct: 288 AHIEVRRLLVEEHRLDAVVILPPGTFLPYAGLSAALLLFT--KADSRTGDVWFYDAAGDG 345 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 R ++DD +L ++ R G+ + Sbjct: 346 R--------RDPLSDDHVADVLKLWERRAGGERTER 373 >gi|111222732|ref|YP_713526.1| Type I restriction enzyme, M protein [Frankia alni ACN14a] gi|111150264|emb|CAJ61961.1| Type I restriction enzyme, M protein [Frankia alni ACN14a] Length = 506 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 67/428 (15%), Positives = 135/428 (31%), Gaps = 69/428 (16%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLS 89 I +RRL+ + G I+ + ++ S + Sbjct: 32 ITYLMFIRRLDAI-----QSTMMNKAKRTGRPIERPVYSDATDELRWSRFRALGSPDEMF 86 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + L + + F + A LL K+ + L Sbjct: 87 AVVRDRVFPWLRE-LGGEGSTYQEHMRGARF-----TIPTANLLAKVVDMLDALPLDEH- 139 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++YE+++ + + F TPR ++ L + +P + Sbjct: 140 ---DTKGDLYEYMLSKIATAG--QNGQFRTPRHIIQLMVEM----------TAPTPGDRI 184 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP CGT GFL ++ ++ + + HG + + + ML+ Sbjct: 185 CDPACGTAGFLVESAAYLGRTHPETLLDPGARRHFGHEMFHGFDFDNTMLRIGSMNMLLH 244 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 +E +I+ +L++ + L+NPPF + + A Sbjct: 245 DVE-------QPDIRYRDSLAQSAAGDAGEYSLVLANPPFAGSLDYETTA---------- 287 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 R + + + GGRAA+++ LF + E+RR L Sbjct: 288 -RDLLAVVRTKKTE----LLFLALFLRLLGLGGRAAVIVPDGVLF--GSTRAHRELRRIL 340 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 +E+ +EA+V LP +F ++T + + + V + T + K Sbjct: 341 VEDHKMEAVVKLPGGVFKPYAGVSTAILFFTRTDSG-GTDDVWFYDVTADGW---SLDDK 396 Query: 441 RRIINDDQ 448 R + + Sbjct: 397 RAPLLPED 404 >gi|5712712|gb|AAD47620.1| truncated HsdM [Lactococcus lactis] Length = 206 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 83/232 (35%), Gaps = 36/232 (15%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKD 308 +++ +E + I TL D G + F ++NPP+ W Sbjct: 1 MNLMMHNIEYNDI-----QIHHADTLESDWPDGVIEGKDTPRMFDAVMANPPYSAHW--- 52 Query: 309 KDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 + RF G+ + FL+H + GR AI+L LF Sbjct: 53 -----NNKDREDDPRFREYGIAPKTKADYSFLLHCLYHTKES----GRVAIILPHGVLFR 103 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 G A E IR+ L++ IEA++ P LF T I + IL + + ++A Sbjct: 104 GAA---EGRIRKALIDKHQIEAVIGFPDKLFLNTGIPVCVLILKKNRANS---DILFVDA 157 Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 + + ++N + + + +I + + R+ L R I Sbjct: 158 SQGFEKMKNL----KQLRPEDIDKITETVIHRKAVDKYSHLATLEESLRMIT 205 >gi|57790490|gb|AAW56185.1| Cj81-126 [Campylobacter jejuni subsp. jejuni 81-176] Length = 149 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 89/146 (60%), Gaps = 5/146 (3%) Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V + S LFN SG IR+ ++END +EAIVALPT++F+ T I T++WI++N+K E + Sbjct: 2 VHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKKPEHK 59 Query: 419 RGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 +GKVQLINAT+ ++ ++ G K+ + + +I +++ + K ++LD FGY Sbjct: 60 KGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGY 119 Query: 476 RRIKVLRPLRMSFILDKTGLARLEAD 501 +I + +P + + D A+L+ Sbjct: 120 TKIIIEKPKSIEALKDDEKFAKLKDK 145 >gi|77164668|ref|YP_343193.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707] gi|76882982|gb|ABA57663.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707] Length = 238 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 19/177 (10%) Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F ++NPPF E + RF GLP S G F+ H+ E Sbjct: 1 MKFDNVVANPPFSLD-----KWGADEAEGDIYNRFWRGLPPKSKGDYAFISHMI---EAA 52 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GR A+V LF G A E IRR L+E++L++A++ LP +LF TNI + I Sbjct: 53 VAKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILI 109 Query: 410 LSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + + E R +V I+A++ + GK + + D +I+ +Y + Sbjct: 110 FDCSREKGGVNEARKEVFFIDASNEYQ----SGKNQNTLGDAHIHRIIQVYNEFRDS 162 >gi|260580903|ref|ZP_05848727.1| LOW QUALITY PROTEIN: type I restriction-modification system, M subunit [Haemophilus influenzae RdAW] gi|260092392|gb|EEW76331.1| LOW QUALITY PROTEIN: type I restriction-modification system, M subunit [Haemophilus influenzae RdAW] Length = 305 Score = 140 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 88/241 (36%), Gaps = 33/241 (13%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP 147 ++E+ F + + I F DF +T RL +K L + K + ++ Sbjct: 38 KQIFTDIENSATGF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGK 96 Query: 148 DTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+LI + + + +F TP+ V L + + ++ K Sbjct: 97 FEDNHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK------ 150 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +YDP G+G L A + GQE+ T+ + M + + Sbjct: 151 --IYDPAAGSGSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINY 202 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 D +I G+TL + F + F +SNPP+ KW D RF Sbjct: 203 DKF-----DIALGNTLMEPQFGDNKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFA 252 Query: 326 P 326 P Sbjct: 253 P 253 >gi|119356723|ref|YP_911367.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] gi|119354072|gb|ABL64943.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266] Length = 834 Score = 140 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 70/405 (17%), Positives = 141/405 (34%), Gaps = 60/405 (14%) Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 Y + + E V + + Y + L + + + +++ ++ E+ Sbjct: 37 YKFMDDMDAESEELGGVRTFFTKEFARYGWAKLMRSGLGGH--ETLNLYAEAISSMPENP 94 Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + K L + K+F I + + + +E+L+ GS+ A Sbjct: 95 GIPALFRSIFKNAYLPYRDPETLKSFLKIIDEFEYDHSERLGDAFEYLLSVLGSQG--DA 152 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231 F TPR ++ A+L P + DP CGT GFL A H+ Sbjct: 153 GQFRTPRHIIDFMVAVL----------DPKKEEKILDPACGTAGFLISAYKHILRANTDA 202 Query: 232 -------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 K +G ++ P+ + + + + +I + TL+ Sbjct: 203 DGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLHGF-------ADPHIDEYDTLTS 255 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + L+NPPF + + RF + +LF+ ++A Sbjct: 256 LDKWNEHADVILANPPF-MSPKGGIKPHK---------RFSIQATRS---EVLFVDYMAE 302 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403 L+ GRA I++ +F +R+ L++ L+ A+++LP +F + + Sbjct: 303 HLKP----NGRAGIIVPEGIIFQSGT--AYKSLRKMLVDTGLV-AVISLPAGVFQPYSGV 355 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 T + IL + D + G +RR+I + Sbjct: 356 KTSIIILDKSIAKRSNTIAFFKVDNDGF----GLGAQRRVIVKND 396 >gi|254433647|ref|ZP_05047155.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27] gi|207089980|gb|EDZ67251.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27] Length = 244 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 19/177 (10%) Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +F ++NPPF E + RF GLP S G F+ H+ E Sbjct: 7 MKFDNVVANPPFSLD-----KWGADEAEGDIYNRFWRGLPPKSKGDYAFISHMI---EAA 58 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GR A+V LF G A E IRR L+E++L++A++ LP +LF TNI + I Sbjct: 59 VAKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILI 115 Query: 410 LSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + + E R +V I+A++ + GK + + D +I+ +Y + Sbjct: 116 FDCSREKGGVNEARKEVFFIDASNEYQ----SGKNQNTLGDAHIHRIIQVYNEFRDS 168 >gi|312897853|ref|ZP_07757268.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359] gi|310621052|gb|EFQ04597.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359] Length = 432 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 74/472 (15%), Positives = 150/472 (31%), Gaps = 64/472 (13%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + I + + L+ + + EL Y ++ F + Sbjct: 4 LRIIMQKLNIREQYE--IPEALMTALLDDIKRQELMEALKDV----YSYGGILAEFEEQS 57 Query: 171 S--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + TP+ V+ + + + D G GG N Sbjct: 58 ADRKNYMQDYTPQCVLDIVARIA-------------PGGNVRDVCAGIGGLSLTKYNTDK 104 Query: 229 DCGSHHKIPPILVPHGQELEPETH---AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 H + L A V ++ + + R + +I Q + Sbjct: 105 TIDLHLEEYSQNAIAFLLLNLLMAEAPATVVEKNVLTGEKLNAYRVENGSIAQ---VPVP 161 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLAN 344 ++ +SNPP+ W+ RF G L S F++ + Sbjct: 162 PLEDWKYDTVISNPPYSMPWDP-----------VMDERFEGYKLAPKSKADYAFVLDGIH 210 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G A +L LF G+A E +IRR L++ +L++A+V LP LF T+I Sbjct: 211 SL----EDNGTAVYILPHGVLFRGQA---EEDIRRELIDRNLLDAVVGLPGKLFANTDIP 263 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463 + + + + + I+A + ++N + + + ++++ Y +R E K Sbjct: 264 VCVLVFKKNRDRK---DILFIDAQKEFKKLKN----KNQMTVEHVTRVINTYATRSEQDK 316 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 +SR + + P + + LE +++ + ++ + Sbjct: 317 YSRCVSIEEIRDNDYNLNIPRYIDNFELEPIPDALEMAKALNQINEEAEQVGREVAVMLR 376 Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 Q + E K I E F+ + A ++ A Sbjct: 377 QLVCTNPEDEKEFKAFIVEME----------KFLTSSTGAVTVQEEEAVIAK 418 >gi|154175026|ref|YP_001408735.1| Sec-independent protein translocase protein TatC [Campylobacter curvus 525.92] gi|153793168|gb|EAT99402.2| Sec-independent protein translocase protein TatC [Campylobacter curvus 525.92] Length = 489 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 68/356 (19%), Positives = 130/356 (36%), Gaps = 49/356 (13%) Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + F ++ LL ++ + + + IYE +++ + + Sbjct: 105 RQAIVKKAFEDNNNYMKDGVLLRQVINVINELNF-ENFKERHAFGEIYETILK--SLQSA 161 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 A +F TPR V ++ P + + D CGTGGFLT A+ + Sbjct: 162 GNAGEFYTPRAVTDFMAKMI----------KPKIGERVADFACGTGGFLTSALKELDSQI 211 Query: 232 S--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DL 286 + +G E + + +L+ ++ + I + L K D Sbjct: 212 QTADEREIYKDSVYGIEKKALPFLLSATNLLLHDID-------NPQIYHDNALEKDIRDY 264 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 +F L NPP+G + + + F L + S+ + LF+ + +L Sbjct: 265 APEDKFDVILMNPPYGGSEKDNIKSN-----------FPIEL-RSSETADLFMNVIMARL 312 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405 + GRAA++L LF + + I+ LL + IV LP +F T+I T Sbjct: 313 KFK----GRAAVILPDGFLF--GTDNAKVAIKTKLLNEFNLHTIVRLPRSVFAPYTSITT 366 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + + T E K+ D+ +N K + + + ++ + +RE Sbjct: 367 NILFFN---TSEPTNKIWFY-RLDMPEGQKNF-SKTKPMKLEHFTPVISWWNNREE 417 >gi|325957310|ref|YP_004292722.1| type i site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus acidophilus 30SC] gi|325333875|gb|ADZ07783.1| type i site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus acidophilus 30SC] Length = 492 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 80/499 (16%), Positives = 164/499 (32%), Gaps = 61/499 (12%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ + E ++ Y + + + + TS+ L + Sbjct: 36 LFLKVYDDR-EQIWEIDQDDYESIIPKGMHWREWAEDNKDGKALTSD-ELLDFVNNKLLP 93 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 L++ + F ++ LL ++ + ++ D + +I Sbjct: 94 TLKNITVTNETPISKAIVKDAFIDANNYMKNGVLLRQVVNVVNEVDFT-DPKDRHLFGDI 152 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE +++ + + + +F TPR + L P + + + D CGTGG Sbjct: 153 YESILKEL--QSAGSSGEFYTPRALTDFIAETL----------KPKLGQRIADLACGTGG 200 Query: 219 FLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 FL A+N ++ + G E + + + + V +L+ ++ + +I Sbjct: 201 FLVSALNILSKQVHSVEDRELYNKAVFGIEKKGQPYILAVTNLLLHDVD-------NPDI 253 Query: 277 QQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 G++L K + +F + NPPFG S+ Sbjct: 254 VHGNSLEKRVTEYTDKDKFDLIMMNPPFGGSELPIIKQNFPTDLQ------------SSE 301 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + LFL + +++ G+ ++L LF + I++ +L++ + I+ L Sbjct: 302 TADLFLALIMYRIKD----NGKVGVILPDGFLF--GNDGAKLNIKKRMLKDFNLHTIIRL 355 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT-------------DLWTSIRNEGK 439 P +F T+IAT + + +L + + +R Sbjct: 356 PGSIFSPYTSIATNILFFDKTGPTKETWFYRLDMPKGYKHFSKTRPMKLEHFDPVREWWN 415 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499 R I D+ Y E K + D F +VL P + K Sbjct: 416 DRHEIQDEDGNYKSKAYTPEELAKNNYNFDLCGFPTETEEVLPPFELMDKYQKERKE--L 473 Query: 500 ADITWRKLSPLHQSFWLDI 518 ++LS + Q D Sbjct: 474 NAKIDKQLSIIKQLLEEDD 492 >gi|332880948|ref|ZP_08448618.1| type I restriction modification DNA specificity domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681122|gb|EGJ54049.1| type I restriction modification DNA specificity domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 977 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 69/401 (17%), Positives = 140/401 (34%), Gaps = 75/401 (18%) Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + I + + L+ A +L +I L V V + Sbjct: 219 FTTRIDYINKTVYEKLNSLYNTDIFTPLQIRDASILKEIMDKLD--PLTLTDVDSDVKGD 276 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E+ + + + ++ TPR +V L+ +P + T+YDP CGTG Sbjct: 277 AFEYFL-KASTATKNDLGEYFTPRHIVKTMVRLV----------NPQIGETIYDPFCGTG 325 Query: 218 GFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 GFL ++ ++ + ++ K+ +G E+ T + M++ D Sbjct: 326 GFLIESFRYIYNNMARTEANIKMLREHTVYGNEIT-NTARITKMNMILAG-------DGH 377 Query: 274 KNIQQGSTLSK--DLFTGKR----------FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 NI +L+ D R + L+N P+ +K + + Sbjct: 378 SNINMRDSLANPIDGKATYRDNDGSEYHYGYDIVLANMPYSQKTKHGELYDL-------- 429 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 ++G + + H K + GR A+V+ LF R +L Sbjct: 430 --------PSTNGDSICVQHCM-KAINSTSPNGRMALVVPEGFLFRKDLT----RTREYL 476 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LEN +++I++LP +F T + T + + + ++ + + ++++G Sbjct: 477 LENCQLQSIISLPQGVFLPYTGVKTDIIYATKVNQKIKKSE---KKKEFWYFDVKSDG-- 531 Query: 441 RRIINDDQRRQI-----LDIYVSRE--NGKFSRMLDYRTFG 474 D+ RR++ L Y + S + F Sbjct: 532 --YTLDNHRRKLDTPSDLAKYEEFRKLDEDQSTEMTNVGFE 570 >gi|291004531|ref|ZP_06562504.1| putative type I restriction system adenine methylase [Saccharopolyspora erythraea NRRL 2338] Length = 682 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 70/444 (15%), Positives = 142/444 (31%), Gaps = 85/444 (19%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + A + TP+ V L L + ++DP CGTGG L+ A+ Sbjct: 156 DTAGAYATPQPVAELMANL-----------ASDYPECVFDPACGTGGLLSAAV------- 197 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +GQ+ + + + + G +L D F R Sbjct: 198 ----GRGANRLYGQDAIDVQAT-------LTDVRLKVEAVANAAVAFGDSLRADAFPDTR 246 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L NPPFG + D R+ GLP S+ + ++ H LE Sbjct: 247 VDTVLCNPPFGVRDWGHDD-------LAYDPRWVYGLPPRSESELAWVQHCLAHLEP--- 296 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GG A +++ +R L+ + A++ LP +++ ++W+L+ Sbjct: 297 -GGLAVVLMPPGA----AERPSGRRVRAELIRQGALRAVIGLPPGAAPPLHLSLHIWVLT 351 Query: 412 NRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------- 463 GK V ++A+ S ++I++++ + + Sbjct: 352 CPDEALATGKSVLFVDASSGSVSD---------------QRIVELWRDFDEAEDRFEAVP 396 Query: 464 -FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI------TWRKLSPLHQSF 514 ++ L + R + + + A L ++ +L+ L + Sbjct: 397 DVAQRLSIVDLLDATVDVTPARRVHIRTAISPNEQAELAEELRKRLGRACDELAQLASTP 456 Query: 515 WLDILKPMM---------QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 +D +P + P W + V + ++ + + Sbjct: 457 TIDSKQPSDTPMTTVWSVSEGEPMTWRTATVADLLRGGALALHRATPTHRTGSTRNADVA 516 Query: 566 RKDPRADPVTDVNGEWIPDTNLTE 589 D ++D+ GE P +L + Sbjct: 517 SNDVAILTLSDLRGEPRPSGSLRD 540 >gi|206603920|gb|EDZ40400.1| Putative Type I Restriction modification system, M subunit [Leptospirillum sp. Group II '5-way CG'] Length = 549 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 167/477 (35%), Gaps = 94/477 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95 L+ L+ + RE L GG++ + + Y S++ + Sbjct: 34 LIFLKLLD-----EEESQRESRLRLGGNSGNTKLLFSGEAEK-YRWSKWRFKSGEDLRNF 87 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 R+ + Y+AS + + + + F + + +L ++ G + + V Sbjct: 88 VRDAVFPYMASLAKDEPEVAD--YFRDAVLEIVDPNVLKQVIDELDGFDFR--KMGPDVK 143 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +I+E+L+ G F TPR + ++ P + TL+DP CG Sbjct: 144 GDIFEYLLTHLGQSA--LNGQFRTPRQIRAFMVEMV----------DPDIGDTLFDPACG 191 Query: 216 TGGFLTDAMNHVADCGSHHKIP-------------------------------------- 237 T GFL DA++++ S H Sbjct: 192 TAGFLIDALDYLLAKYSDHVEEYPIYGEEWLEKRGQTLVEAKKAISNLQTYKKGAGERIP 251 Query: 238 ----PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +G ++ + + V +++ + + + + G LS++ +++ Sbjct: 252 DWKILEASIYGTDVSRQMLRISVMNLVLHGIRHARLKRANALSEMG-GLSEEDLK-RQYK 309 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPF + KD + +LFL + L G Sbjct: 310 VILSNPPFAGQLPKDSIRADLP-------------TNSKKSELLFLSMMMQHLAP----G 352 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILS 411 GR A+V+ LF + +++R+ LL + A+++LP +F + + T + + Sbjct: 353 GRCAVVIPEGLLF--GSTKAHTDLRKKLLMEFDLMAVISLPAGVFKPYS-GVKTGVLVFR 409 Query: 412 N--RKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKF 464 + +R KV D + + G R + + +L+ + S ++ +F Sbjct: 410 KPVSGSSKRIEKVWFYEITNDGYDPEKISGGGRIETPEKNDIPDLLNQWKSYKDSRF 466 >gi|257421715|ref|ZP_05598705.1| predicted protein [Enterococcus faecalis X98] gi|257163539|gb|EEU93499.1| predicted protein [Enterococcus faecalis X98] Length = 438 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 81/458 (17%), Positives = 160/458 (34%), Gaps = 86/458 (18%) Query: 134 YKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLAT 188 YK+ + S + ++ F +E S+ TP ++ +A+ Sbjct: 22 YKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVAS 81 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L G R+ D GTGG + P + +E Sbjct: 82 GVL------------GATRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFS 119 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFT 288 + + IR + + + G +LS+ D Sbjct: 120 DRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVP 171 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + + NPP+ W K+ +E+E + L S FL+ ++L+ Sbjct: 172 ATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE 226 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G +I+L LF G A E +IR+ L+E +L++A++ LP F T+I T L Sbjct: 227 ----NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPTVLL 279 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467 +L + + + I+A+ + + ++ D+ +IL+++ SR+ KFS + Sbjct: 280 VLKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQSRKTIDKFSSV 332 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-QSFWLDILKPMMQQI 526 + + P R + + L + K + +++ K M + Sbjct: 333 VTIEELKENDFNLNLP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNNIELAKMMNDLV 391 Query: 527 YPYGWAESFVKESI---------KSNEAKTLKVKASKS 555 A+ +KE K N+ ++K ++ Sbjct: 392 GTTPEADRQIKEFASFFSGHVGYKDNQKPKRRIKIAEP 429 >gi|94995074|ref|YP_603172.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10750] gi|94548582|gb|ABF38628.1| Type I restriction-modification system methylation subunit [Streptococcus pyogenes MGAS10750] Length = 263 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 39/251 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59 M E T S L +W +A+ L G D+ +L + L L EK+ Sbjct: 1 MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57 Query: 60 -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105 A+ + + V G Y + L + LES Sbjct: 58 NTFTEAQKIFEDAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117 Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154 F ++ + +FED D S +L ++ + + K + I+ + V Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + YE+LI F SE + A +F TP+ V HL T ++ + TLYDP Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227 Query: 215 GTGGFLTDAMN 225 G + N Sbjct: 228 GFRVIIVIEAN 238 >gi|312902303|ref|ZP_07761510.1| N-6 DNA Methylase [Enterococcus faecalis TX0635] gi|310634274|gb|EFQ17557.1| N-6 DNA Methylase [Enterococcus faecalis TX0635] Length = 435 Score = 138 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 78/418 (18%), Positives = 147/418 (35%), Gaps = 73/418 (17%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLATA 189 L +I + S EL ++ F +E S+ TP ++ +A+ Sbjct: 20 KLIEILSSLSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVASG 79 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 +L G R+ D GTGG + P + +E Sbjct: 80 VL------------GPTRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFSD 117 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFTG 289 + + IR + + + G +LS+ D Sbjct: 118 RALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVPA 169 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + + NPP+ W K+ +E+E + L S FL+ ++L+ Sbjct: 170 TKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE- 223 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G +I+L LF G A E +IR+ L+E +L++A++ LP F T+I T L + Sbjct: 224 ---NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPTVLLV 277 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468 L + + + I+A+ + + ++ D+ +IL+++ SR+ KFS ++ Sbjct: 278 LKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQSRKAVDKFSSIV 330 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + P R + + L + K + + L MM + Sbjct: 331 TIEELKENDFNLNIP-RYIDTFEPETVKPLSEIMAEMKQTEQEIAKNNIELAKMMNDL 387 >gi|57506133|ref|ZP_00372055.1| type I restriction-modification system M subunit [Campylobacter upsaliensis RM3195] gi|57015617|gb|EAL52409.1| type I restriction-modification system M subunit [Campylobacter upsaliensis RM3195] Length = 495 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 145/383 (37%), Gaps = 56/383 (14%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + L T N+ + +FED + ++ LL ++ + + Sbjct: 85 NELFPTLKALNITESTPLNQSIVRQVFEDLN-----NYMKDGYLLREVINEIESSLVIHN 139 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + +YE ++ S + A +F TPR + +L SP + + Sbjct: 140 RQDFKELCKVYESFLKTLQSAGN--AGEFYTPRAITEFMVEML----------SPKLGES 187 Query: 209 LYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 + D CGTGGFL A + + + + +G E + +C +LI +E Sbjct: 188 VADLACGTGGFLISAAHFLEKQVSLTSERKVFETSFYGVEKKSLPFLLCATNLLINGIE- 246 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + N++ G+ F +F L NPP+G ++ G Sbjct: 247 ------NPNLKHGNAFDFSKFEDFDDLTKYPQFDIILMNPPYGG------------NERG 288 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + P K S+ + LF+ + ++L GR+A+VL LF A + + ++R Sbjct: 289 NDIKNFPQEYKSSETADLFMALILHRLSYK----GRSAVVLPDGFLF--GADNAKINLKR 342 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 LL + + I+ LP +F T+I T L + K + D+ I++ G Sbjct: 343 KLLSDFNLYLILRLPKSVFAPYTSIPTNLLFFNADKGGTEKTH---FYRLDMPEGIKSFG 399 Query: 439 KKRRIINDDQRRQILDIYVSREN 461 K + ++ + L + S + Sbjct: 400 -KTKQMSLEHFEPFLQWWQSGKE 421 >gi|146321310|ref|YP_001201021.1| EcoE type I restriction modification enzyme M subunit [Streptococcus suis 98HAH33] gi|145692116|gb|ABP92621.1| EcoE type I restriction modification enzyme M subunit [Streptococcus suis 98HAH33] Length = 359 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 65/344 (18%), Positives = 122/344 (35%), Gaps = 50/344 (14%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + ++ ++IYE +++ S + +F TPR +L Sbjct: 1 MINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAGNS--GEFYTPRAATDFIAEML---- 53 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--PPILVPHGQELEPETHA 253 +P + T+ D CGTGGFLT +NH+ + G E + H Sbjct: 54 ------NPQLGETMADLACGTGGFLTSTLNHLGQQRKTSEDVQKYNQAVFGIEKKAFPHL 107 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKD 310 + V + + ++ I G+TL K D ++F + NPPFG Sbjct: 108 LAVTNLFLHEID-------DPKIIHGNTLEKNVRDYTEDEKFDIIMMNPPFGGSE----- 155 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 F L + S+ + LF+ + +L+ GR ++L LF Sbjct: 156 ------LETIKNNFPAEL-RSSETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGV 204 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 + +++ L+E + I+ LP +F T I T + K E +L + + Sbjct: 205 K---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPE 260 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + + R D + + + +R+ ++F Sbjct: 261 GYKNFSKTKPMRN----DHFNPVREWWKNRQEILEGNFYKSKSF 300 >gi|256810495|ref|YP_003127864.1| N-6 DNA methylase [Methanocaldococcus fervens AG86] gi|256793695|gb|ACV24364.1| N-6 DNA methylase [Methanocaldococcus fervens AG86] Length = 1068 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 83/496 (16%), Positives = 169/496 (34%), Gaps = 62/496 (12%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFS 108 +R + + +F S+ + T E Y + Sbjct: 186 SRDELIRVLEKVHDTVWQGGKLAPTT--AFDEVSKLIFCKIWDEKTTRKGEYYRFQIGSN 243 Query: 109 DNAKAIFEDFD-FSSTIARLE----------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157 ++AK +F+ + + + ++Y + + I L Sbjct: 244 ESAKDVFDRIKKIYEDAKKKDPYVFAEDIKLEPEIVYSVVEQLQEINL--KDTDLDTKGV 301 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E + F + TPR++++ + D + + DP CG+G Sbjct: 302 AFERFMEDF---FKGKMGQYFTPREIINFMVEFAMLHFDE----DEYLNLKVLDPACGSG 354 Query: 218 GFLTDAMNHVA----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR--RLE 265 GFL ++ + + H +G E+ + VC M++ Sbjct: 355 GFLLHVLDFIRRWAEGNYDKFEAYQHWHEFAKNNIYGIEINEQISRVCKMNMILHDDGHT 414 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + D ++ ++ + KD F F L+NPPFG K +K + + ++ G+ GR Sbjct: 415 NIISFDALEDFEKIEKIHKD-FKKGSFDLILTNPPFGAKIKKSERKYIENYELGK-GR-- 470 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 +LF+ L+ GG IVL L N +R ++L Sbjct: 471 ----TSQKTEILFIERCWEFLKE----GGILGIVLPDGILTNSTLQY----VRDFILNRF 518 Query: 386 LIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGK--VQLINATDLWTSIRNEGKKR 441 + A+++LP F + + + L L +K E G + + A + ++ Sbjct: 519 RVLAVISLPNFAFTHYGAGVKSSLVFLQKKKEGEDLGNYPIFMAIAEHIGYDATGRKDEK 578 Query: 442 RIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 + D IL+ Y + GK + L++ F R ++ L + D+ + Sbjct: 579 NDLPD-----ILEAYKEFLKTGKLKKNLNFEGFIVYRNELEGRLDAYYYKDEFRELEKKL 633 Query: 501 DITWRKLSPLHQSFWL 516 + K++ L + + Sbjct: 634 KKSKFKITTLGKIAHV 649 >gi|299137475|ref|ZP_07030657.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8] gi|298600880|gb|EFI57036.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8] Length = 526 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 86/407 (21%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE L+ + F TPR ++ L + L+ +P + + DP Sbjct: 165 DIQGDVYEMLLNEISTAGK--NGQFRTPRHIIKLVSELV----------NPQLGHRICDP 212 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI---------------------------LVPHGQ 245 CGT GFL DA ++ + K +G Sbjct: 213 ACGTAGFLLDAYQYIITQLAKKKKKRQALTPDEDGFVRSSVSGMLTQDNKDILEQSLYGY 272 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 + + + + +++ ++ + N+ TLSK + + ++NPPF Sbjct: 273 DFDTTMVRLALMNLMMHGID-------NPNVDYQDTLSKKFTEEEEYDIVMANPPFTGSI 325 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 DK + + + + +LF + L+ GG A I++ L Sbjct: 326 --DKGDINESLQL-----------NTTKTELLFTERIFTLLKT----GGTAGIIIPQGVL 368 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424 F +G E R+ L+E+ ++A+++LP+ +F +AT + + + + Sbjct: 369 F--GSGGAFVEARKKLVEDAELKAVISLPSGVFKPYAGVATAILVFTRGGKTKH------ 420 Query: 425 INATDLWTSIR---NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 T + + + KR+ I++ ++ + +R F + V Sbjct: 421 ---TWFYRIDKDGLSLDDKRQRISESDLPDVVAQWKARNPLHPGDRKAKCFF----VPVQ 473 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 + L + D T + L LK + +I Sbjct: 474 EIRDKQYDLSFNRYHEADHDETEYE----EPKVILQKLKTLEDKIQQ 516 >gi|146319438|ref|YP_001199150.1| Type I restriction-modification system methyltransferase subunit [Streptococcus suis 05ZYH33] gi|145690244|gb|ABP90750.1| Type I restriction-modification system methyltransferase subunit [Streptococcus suis 05ZYH33] Length = 237 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 95/257 (36%), Gaps = 36/257 (14%) Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSML 337 L D + F ++NPP+ KW + + RF L S Sbjct: 8 DELGIDQ--PRSFDAVVANPPYSAKW-------DNRESKLKDPRFMEYGKLAPASKADFA 58 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F++H L N G AIVL LF G A E IR+ ++E + ++A++ LP +L Sbjct: 59 FILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEKNYLDAVIGLPANL 111 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F+ T I T + + + + V I+A+ + GK + ++DD +I++ Y Sbjct: 112 FYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQNHLSDDMVEKIVETYH 164 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 +R+ + + + L+ + L + Q D Sbjct: 165 NRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQLEQD 215 Query: 518 --ILKPMMQQIYPYGWA 532 ++ + +I Sbjct: 216 RLEIRALEDKIRQQLKT 232 >gi|222055951|ref|YP_002538313.1| N-6 DNA methylase [Geobacter sp. FRC-32] gi|221565240|gb|ACM21212.1| N-6 DNA methylase [Geobacter sp. FRC-32] Length = 818 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 91/532 (17%), Positives = 157/532 (29%), Gaps = 98/532 (18%) Query: 35 ILPFTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 I L+RLE L+ + + Y K N + Sbjct: 32 ITYLLFLKRLEDIDLKRQQRGLPSIYADNETCKWGYIRQEKTNPSHLINVV-FPWLRELD 90 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-- 151 + + + S N + F K +L + Sbjct: 91 KHFKPESDEPSELASLNNRMADAYFQLDP-----SKGKVLSDAIDAVDQLFARAGEGSAA 145 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 +M + +E+L+ + F TPR ++ LL P + + D Sbjct: 146 QDIMGDTFEYLLSEVATAGK--NGQFRTPRHLIRFMVELL----------DPEPSQRVID 193 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKI-------------------------PPILVPHGQE 246 P GTGGFL ++ S + G + Sbjct: 194 PAAGTGGFLFSTQQYLMRKYSAQENLVLEWDGTPHRTDGAAATSEQYAAIHHGANFVGLD 253 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG-------KRFHYCLSN 298 + + +++ L ++ QG +LSK D + + + L+N Sbjct: 254 NDRTMARIGWMNLILHDL-------TDPHLLQGDSLSKRDGKPELARLMESETYDFVLAN 306 Query: 299 PPF-----GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PPF EKD + + G+ + S+ + + G Sbjct: 307 PPFTGTVDSNDLEKDSKIFPRAAERGKKK--EDAITNKSE------LLFLWLMLDLLQVG 358 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 GR A+++ LF +RR LL ++E +++LP +F T + T + I Sbjct: 359 GRCAVIIPEGVLF--GNTDAHVRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIF-- 414 Query: 413 RKTEERRGKVQLINAT-------DLWTSIR---NEGKKRRIINDDQRRQILDIYVSRENG 462 RK R K T + + KR QR + D Sbjct: 415 RKETRRDDKQTFTGTTAPRTEYVWFYEVEEDGYSLNAKRNE-QPGQRNDLWDALEKF--- 470 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 K +L+P SF ++ LA L T KL+P ++F Sbjct: 471 KAWLSHGREGAQRYEKTLLQP---SFHPERWRLALLRD--TADKLTPAGEAF 517 >gi|307827039|ref|ZP_07656760.1| N-6 DNA methylase [Methylobacter tundripaludum SV96] gi|307732328|gb|EFO03271.1| N-6 DNA methylase [Methylobacter tundripaludum SV96] Length = 172 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 33/199 (16%) Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 PTCG+G L A + + P L GQE++ T A+ Sbjct: 1 PTCGSGSLLLKASD---------EAPRGLTIFGQEMDNATSALARMN------SRVSTTT 45 Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFG 325 L I +G+T++ + K F + ++NPPF K W + E E RF Sbjct: 46 LPPKIWKGNTIADPQWKDGNGKLKTFDFAVANPPFSNKNWTSGINPQEDEFD-----RFV 100 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 G+P +G FL+H+ L+ G+ A++L LF A E+ IR L++ Sbjct: 101 WGIPPEKNGDYTFLLHILKSLKST----GKGAVILPHGVLFRSNA---EARIRENLIKQG 153 Query: 386 LIEAIVALPTDLFFRTNIA 404 I+ I+ LP +LF+ T I Sbjct: 154 YIKGIIGLPANLFYGTGIP 172 >gi|148263099|ref|YP_001229805.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] gi|146396599|gb|ABQ25232.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] Length = 549 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 91/535 (17%), Positives = 178/535 (33%), Gaps = 105/535 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STN 95 L+ L+ E T +R + A + + + + S++ + + Sbjct: 34 LIYLKLLDE--EETSRELRVRLGAGNSRFLFPDQAER------FRWSKWRFKSGIELNDF 85 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 R + Y+AS + + E F + + +L ++ IE + V Sbjct: 86 IRGEVFPYMASLVKDEPQVAE--YFRDARLEINEVDVLKQVVDELDSIEFR--KLGPDVK 141 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +I+E+L+ G F TP+ + A++ P T+ DP CG Sbjct: 142 GDIFEYLLTHLGQSA--LNGQFRTPKQIRSFMVAMV----------DPEFGDTIDDPACG 189 Query: 216 TGGFLTDAMNHVADCGSH--------------------HKIPPIL--------------- 240 T GFL DA+ ++ S + + Sbjct: 190 TAGFLIDAVEYLLAKYSENPQEMPIYGEEWLERKGLTLDEAKKQMPNLQTYRKGPGEKIP 249 Query: 241 -------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +G ++ + + + +++ + + + + G L++D +++ Sbjct: 250 DWGILEASIYGTDVSRQMMRISMMNLVLHGIGKARLKRANVLSEMG-GLTEDDL-NRKYK 307 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPF KD + +LFL + L G Sbjct: 308 VSLSNPPFAGMLPKDSIRHDLP-------------TNSKKSELLFLGLMMESLAP----G 350 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 GR A+V+ LF + E+R+ LL++ + A+V+LP +F + T + + Sbjct: 351 GRCAVVVPEGALF--GSTGAHVELRKKLLQDFEVLAVVSLPAGVFKPYAGVKTSVLVFRR 408 Query: 413 RKTEERRG-----KVQLIN-ATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFS 465 +G KV D + + G R + + +L + + GKFS Sbjct: 409 PANPPEQGKPATAKVWFYEIKNDGYDPDKITGGGRPETPEQNDIPTMLVAWEGYKAGKFS 468 Query: 466 RMLDYRTFGYRRIKVLRPLRMS---FILDKTGLARLEADITWRKLSPLHQSFWLD 517 + G VL+P + D +A +A++ + P D Sbjct: 469 QPP-----GVEAGTVLKPGSPDPKCWWADYERIADSDANLGASRYKPTVGEDLSD 518 >gi|239833255|ref|ZP_04681583.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum intermedium LMG 3301] gi|239821318|gb|EEQ92887.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum intermedium LMG 3301] Length = 865 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 61/393 (15%), Positives = 127/393 (32%), Gaps = 81/393 (20%) Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 Y +++ E + + Y + L + + + ++S+ + ++ Sbjct: 37 YKFMDDMDLEAEELGGERRFFTKDYERYRWAKLVAPGVSG--QDMLNTYSEALTNMVQNE 94 Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + L + + F + + +E+L+ GS+ A Sbjct: 95 GLPKLFRDIFRNAYLPYRDPETLRAFLREINSFTYDHSEKLGDAFEYLLSVLGSQG--DA 152 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231 F TPR ++ ++ +P + DP CGT GFL A H+ Sbjct: 153 GQFRTPRHIIDFMVEII----------NPQKNEVIMDPACGTAGFLISAYKHILKQNSTG 202 Query: 232 ------------------------------SHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + G ++ P+ + + + + Sbjct: 203 VVNSNGASTEGDAAEQALESPMRYPGDLLQPDDRARLARNIRGYDISPDMVRLSLVNLYL 262 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 +++ TL+ + + L+NPPF + Sbjct: 263 HGF-------ADPKVEEYDTLTSEDKWTETADVILANPPF-MSPKGGIKPHT-------- 306 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 RF + +LF+ ++A L GRAAIV+ +F S +R+ L Sbjct: 307 -RFQVQSKRS---EVLFVDYIAEHLTP----NGRAAIVVPEGIIFQS--QSAYVALRKML 356 Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSN 412 +EN + A+++LP +F + + T + IL Sbjct: 357 VENH-LAAVISLPAGVFNPYS-GVKTSILILDR 387 >gi|256962776|ref|ZP_05566947.1| N-6 DNA methylase [Enterococcus faecalis HIP11704] gi|256953272|gb|EEU69904.1| N-6 DNA methylase [Enterococcus faecalis HIP11704] Length = 438 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 148/419 (35%), Gaps = 76/419 (18%) Query: 134 YKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLAT 188 YK+ + S + ++ F +E S+ TP ++ +A+ Sbjct: 22 YKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVAS 81 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L G R+ D GTGG + P + +E Sbjct: 82 GVL------------GATRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFS 119 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFT 288 + + IR + + + G +LS+ D + Sbjct: 120 DRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVS 171 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + + NPP+ W K+ +E+E + L S FL+ ++L+ Sbjct: 172 ATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE 226 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 G +I+L LF G A E +IR+ L+E +L++A++ LP F T+I T L Sbjct: 227 ----NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPTVLL 279 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467 +L + + + I+A++ + + ++ D+ +IL+++ SR+ KFS + Sbjct: 280 VLKKNRLNK---DILFIDASNEFKKEKAW----NVLEDEHVAKILEVFQSRKAVDKFSSV 332 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + + P R + + L + K + + L MM + Sbjct: 333 VTIEELKENDFNLNIP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNNIELAKMMNDL 390 >gi|91206234|ref|YP_538589.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] gi|157827849|ref|YP_001496913.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii OSU 85-389] gi|91069778|gb|ABE05500.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] gi|157803153|gb|ABV79876.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii OSU 85-389] Length = 517 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 132/375 (35%), Gaps = 60/375 (16%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD---FSSTIAR-------- 126 F + L S N + + I + SD+ I + + Sbjct: 174 ERFSEFANILFLKLLSENNEKSWWNSIKAQSDD--DIIGYINGHVIEQIKNKYGGDVFTP 231 Query: 127 --LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 L + L I + L + D N +E+ + + + ++ TP++++ Sbjct: 232 ISLSNSHTLRHIIDAIDPLILSSTNIKD----NAFEYFLEK-TRSTCDYLGEYFTPKNII 286 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPI 239 L + P T+YDP CG+GGFLT+A ++ + K Sbjct: 287 KLTINYV----------DPKFGETVYDPFCGSGGFLTEAFKYIKENNIINTDEDLKRLRH 336 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------TGKRFH 293 +G+E+ T + M++ D IQQ ++L + +F Sbjct: 337 NTLYGREIT-TTARIAKMNMILHG-------DGHSGIQQINSLENSKYIRPTTNQTLKFD 388 Query: 294 YCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 ++N PF ++ +K + +N + G+ ++G + H L Sbjct: 389 IIVTNMPFSQEITKKTIKNGKTVTENHIAHLYYNGIA-KNNGDAACVFHCLQNLRE---- 443 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411 GGR A+V+ LF + +R++LL ++ +++LP F T + T + + Sbjct: 444 GGRMALVVPERFLFRRDT----AAVRQFLLSKAKLQTVISLPQGTFLPYTGVKTSILYFT 499 Query: 412 NRKTEERRGKVQLIN 426 + + Sbjct: 500 DAHKPNYQRYYWFYE 514 >gi|270668424|ref|ZP_06222532.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] gi|270684879|ref|ZP_06222842.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] gi|270316193|gb|EFA28164.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] gi|270316685|gb|EFA28474.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] Length = 117 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 11/101 (10%) Query: 575 TDVNGEW---IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631 T GE+ ++L + E++P ++I DYF EV H+ +A+++ E ++ Sbjct: 23 TGKAGEYILYETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKI 74 Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 GYEI+FN++FY+++P R L ++ ++ +E Q L+ E+ Sbjct: 75 GYEISFNKYFYRHKPLRSLAEVAQDILALEKQADGLISEIL 115 >gi|217971595|ref|YP_002356346.1| N-6 DNA methylase [Shewanella baltica OS223] gi|217496730|gb|ACK44923.1| N-6 DNA methylase [Shewanella baltica OS223] Length = 818 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 78/578 (13%), Positives = 160/578 (27%), Gaps = 94/578 (16%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-DLESFVKVAGYSFY-NTSEYSLSTLG 92 I L+RLE + R+ + G + + + Sbjct: 32 ITYLLFLKRLEDI--DIKRQQRDLPSIYEGFETCKWSYIRQEKTNPGHLIDVVFPWLREL 89 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150 + + E + S N + F K +L + + Sbjct: 90 DKHFKAASEEHSELASLNNRMADAYFQLDP-----NKGKVLSDAIDKIDELFARAGDGSA 144 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 +M + +E+L+ + F TPR ++ L+ P + + Sbjct: 145 TQDIMGDTFEYLLSEMATAGK--NGQFRTPRHLIRFMVELM----------DPEPGQRVI 192 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKI-------------------------PPILVPHGQ 245 DP GTGGFL ++ S + G Sbjct: 193 DPAAGTGGFLFSTQQYLMRKYSATENLVLEWDGTPHRTDGAAATPDQYSAIHSGANFVGL 252 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---------DLFTGKRFHYCL 296 + + + +++ + ++ QG +LSK DL + + + L Sbjct: 253 DNDRTMARIGWMNLILHDI-------TDPHLLQGDSLSKREGKPKQLSDLLASEVYDFVL 305 Query: 297 SNPPFGKKWEKDK---DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +NPPF + D D++ G+ + + S+ + + G Sbjct: 306 ANPPFTGIIDSDDLEPDSILFPRVGGKGKKKDDSITNKSE------LLFLWLMLDLLRVG 359 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 GR A+++ F +RR LL ++E +++LP +F T + T + I Sbjct: 360 GRCAVIIPEGVFF--GNTDAHMRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIFRK 417 Query: 413 RKTEE-----------RRGKVQLINATDLWTSIRNEGK----KRRIINDDQRRQILDIYV 457 + V + S+ + K + D + + + Sbjct: 418 ETRRDDKQAFTGSNSPCTEHVWFYEVEEDGFSMDAKRNDRPDKNNDLWDALGKFKVWLSH 477 Query: 458 SRE---NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 R+ K S + R +LR + L W Sbjct: 478 GRDGALRNKTSLLQPSYYTERWRHSMLRDTANKLTPAGEAFSGLSDTSMWDGKIWSIHEL 537 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552 + ++ A + + + +K Sbjct: 538 FPELPADPKDAENLVRTAVGNTVQELVIQNFHPVALKL 575 >gi|270719677|ref|ZP_06223339.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] gi|270315394|gb|EFA27667.1| type I restriction-modification system specificity subunit [Haemophilus influenzae HK1212] Length = 116 Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 11/101 (10%) Query: 575 TDVNGEW---IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631 T GE+ ++L + E++P ++I DYF EV H+ +A+++ E ++ Sbjct: 22 TGKAGEYILYETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKI 73 Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 GYEI+FN++FY+++P R L ++ ++ +E Q L+ E+ Sbjct: 74 GYEISFNKYFYRHKPLRSLAEVAQDILALEKQADGLISEIL 114 >gi|237807924|ref|YP_002892364.1| N-6 DNA methylase [Tolumonas auensis DSM 9187] gi|237500185|gb|ACQ92778.1| N-6 DNA methylase [Tolumonas auensis DSM 9187] Length = 513 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 68/432 (15%), Positives = 140/432 (32%), Gaps = 85/432 (19%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + V +IYE+L+ + + F TPR ++ + ++ Sbjct: 123 VITAAVEMVDKLPLDKSDVKGDIYEYLLSKLS--SAGINGQFRTPRHIIDMMIEMI---- 176 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSH 233 T+ DP CGT GFL M ++ + Sbjct: 177 ------DVQPTETVCDPACGTAGFLARTMEYLTRKYSSPESIYKDEDGNPVYSGDLLAPY 230 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTG 289 + + G + + V M++ + + +I +L+K Sbjct: 231 SEHINKEMFWGLDFDSTMLRVSAMNMMLHGV-------SNAHITYQDSLNKSFVGKPQEE 283 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F L+NPPF K D+ +V + LF+ + L+ Sbjct: 284 NYFDKILANPPF--KGSLDETSVNPYVLKKVKTKKTEL---------LFVALILRMLK-- 330 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408 GGR+A ++ LF + S ++R+ L+EN+ +EA+++LP+ +F ++T + Sbjct: 331 --LGGRSATIVPDGVLF--GSSSAHKDLRKELIENNQLEAMISLPSGVFKPYAGVSTGIL 386 Query: 409 ILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI----------------INDDQRRQ 451 I + + +V L + D ++ KK + Sbjct: 387 IFTKGGS---TDRVFLYDMKDDGYSLDDKRIKKDHDGDIPDVIAKWKRYTALYEKNDVAT 443 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 I + + F+ +D + + R + + + + K Sbjct: 444 IEAEFSDKTKPAFTVSIDELKAQNYDLSLNR--YKEVVYQEESYENPKVILGKLKALENE 501 Query: 512 QSFWLDILKPMM 523 L+ L+ M+ Sbjct: 502 ILADLNALEGML 513 >gi|312887842|ref|ZP_07747429.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603] gi|311299661|gb|EFQ76743.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603] Length = 295 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 72/350 (20%), Positives = 120/350 (34%), Gaps = 73/350 (20%) Query: 7 SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62 SA +AN +W L D + + IL L RL +K+ Sbjct: 2 SADEIANKLWNLCNVLRDDGVTYHQYLNELTYIL---FL-RLSE---------IKKFENE 48 Query: 63 GGSNIDLESFVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121 S + ++T L+T+ + S + K I ++ Sbjct: 49 LPEGYRWSSLKAIKDNKELFDTYRELLATISTK-----------SENPTIKEI-----YT 92 Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + L K L + + I+ D ++ IYE L+ + SE GA + TPR Sbjct: 93 NASTTLRKPVNLRTLITSIDLIDWF-DEQEQDKIATIYEELLEKNASEKKSGAGQYFTPR 151 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SH 233 ++++ LL+ P + DP GT GF+ A ++ + Sbjct: 152 PLINVMVDLLV----------PKLGERWNDPAAGTFGFMIAADYYLKEKHHHYFELGSKE 201 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 K G EL + H + + + LE I+ G TLS+ + K F Sbjct: 202 RKFQVDEAFSGCELVQDAHRLALMNAKLHGLE--------SRIEMGDTLSELGKSFKNFD 253 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 L+NPPFG K ++ + F S+ + FL H+ Sbjct: 254 GVLANPPFGTKQGGERPTRDD---------FTY---PTSNKQLNFLQHIY 291 >gi|237750520|ref|ZP_04581000.1| type I restriction-modification system M subunit [Helicobacter bilis ATCC 43879] gi|229374050|gb|EEO24441.1| type I restriction-modification system M subunit [Helicobacter bilis ATCC 43879] Length = 496 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 96/515 (18%), Positives = 182/515 (35%), Gaps = 84/515 (16%) Query: 39 TLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYS-------FYNTSEY- 86 L+ L E +A+ E +Y + ++ ES+ F N + Sbjct: 31 LFLK-LYDYYEKEWTALNEMNGTEYHSIIPEHLRWESWAVGEKSPTGEPLLTFINNELFP 89 Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 +L L N+ + +FED + ++ LL ++ Sbjct: 90 TLKAL-------NITESTPLNQSIVRKVFEDLN-----NYMKDGYLLREVINEIESSLKI 137 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + + +YE ++ S + A +F TPR V +L SP + Sbjct: 138 HNRQDFKELCKVYESFLKTLQSAGN--AGEFYTPRAVTEFMVEML----------SPKLG 185 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 ++ D CGTGGFL A + + + + +G E + +C +LI + Sbjct: 186 ESVADLACGTGGFLISAAHFLEKQVNLTSERKVFETSFYGVEKKSLPFLLCATNLLINGI 245 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEH 316 E + N++ G+ F +F L NPP+G + Sbjct: 246 E-------NPNLKHGNAFDFSNFEDFDINLTKYPKFDIILMNPPYGG------------N 286 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + G+ + P K S+ LF+ + ++L G+AA+VL LF A + + Sbjct: 287 ERGDDIKNFPQEYKSSETVDLFMALILHRLSYK----GKAAVVLPDGFLF--GADNAKIN 340 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 ++R LL + + I+ LP +F T+I T L + + D+ I+ Sbjct: 341 LKRKLLSDFNLYLILRLPKSVFAPYTSIPTNLLFFNADPQGTQHTH---FYRLDMPEGIK 397 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 + G K + ++ + L E+GK + + F + ++ D G Sbjct: 398 SFG-KTKQMSLEHFEPFLQW---WESGKQTLQDESGNFKAKSYTKEELEARNYNFDLCGY 453 Query: 496 ----ARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + A + + + L +M+QI Sbjct: 454 VSEEEEILAPLELMEQIKTERDKLNATLDSIMKQI 488 >gi|257793832|ref|ZP_05642811.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9781] gi|257787804|gb|EEV26144.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9781] Length = 298 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 33/238 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSL 298 >gi|218675223|ref|ZP_03524892.1| putative type I restriction enzyme modification methylase subunit [Rhizobium etli GR56] Length = 364 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 78/414 (18%), Positives = 135/414 (32%), Gaps = 78/414 (18%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 +A ++ +W+ L + + + T L L+ E R Sbjct: 2 NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMMAERNRET------GSLPKT 53 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDN----------- 110 + V G L TLG+T+TR + + + Sbjct: 54 MRWADLVAENGLRKLEHYRKVLVTLGATSTRLGKDDVLVLPPGDGATPEDKKRYADARPL 113 Query: 111 ---AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + I F + + + L + ++ + ++YE L+++ Sbjct: 114 PEMVQEI-----FDNASTFIREPQNLTTLVTAIDELDWFSE--ERDQFGDLYEGLLQKNA 166 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 E GA + TPR ++ L L+ P + DP GTGGFL A ++ Sbjct: 167 EETKRGAGQYFTPRVLIELLVRLM----------QPQPGEIIQDPAAGTGGFLIAADRYM 216 Query: 228 ADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + HG E P T + + + + ++SD ++ G Sbjct: 217 RARTDNYFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD-------HVDLG 269 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 TLS R + L+NPPFG +S + F+ Sbjct: 270 DTLSDKGKGLGRVNLILTNPPFGPAGGAPTRDDLSV------------TASVSSYQLPFV 317 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 H L+ GGRAAIV+ + LF G E+RR ++ + I+ L Sbjct: 318 EHCIRALQP----GGRAAIVVPDNVLFEDARG---KELRRMMMNWCDLHTILRL 364 >gi|207859654|ref|YP_002246305.1| type I restriction-modification system methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206711457|emb|CAR35842.1| putative Type I restriction-modification system methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 421 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 119/332 (35%), Gaps = 59/332 (17%) Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 N SYI K IF + + + +I + + +T+ + ++ Sbjct: 66 NDNSYIKLNQKEFKLIFSNITLYDFSQSRDIKNYISRITEI---CNEYINTLSIHSILDL 122 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + LI E + TP ++V ++ + +DP CG+G Sbjct: 123 FTSLI----EENRPPTQKHYTPHEIVTFMGNIIQA----------QKGESFFDPACGSG- 167 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 +++ + + G E + + + ML+ L NI Sbjct: 168 ------EFISEIIKNQ-----VAISGSEYDVDRLKISKMKMLVNDL-------SPSNISP 209 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + + K+ F LSNPPF K D + G P S+ Sbjct: 210 --SYFTEGHNLKKNFDIILSNPPFSLKIPFDMEMHFCM----------YGKPPTSNADFA 257 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL + L+ GRAAI+L LF E EIR+ +++N+ I AI+ LP + Sbjct: 258 FLQYCIFMLKD----NGRAAIILPDGILFREGK---EYEIRKKIIKNNHISAIIYLPKGM 310 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATD 429 F T IAT + + + ++ + +IN Sbjct: 311 FKTTAIATNIIVFKKK---QKTNDILMINVRK 339 >gi|282881941|ref|ZP_06290586.1| type I restriction-modification system methyltransferase subunit [Peptoniphilus lacrimalis 315-B] gi|281298216|gb|EFA90667.1| type I restriction-modification system methyltransferase subunit [Peptoniphilus lacrimalis 315-B] Length = 983 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 62/364 (17%), Positives = 127/364 (34%), Gaps = 69/364 (18%) Query: 70 ESFVKVAG--YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127 E + +G +F N + + + I + D + L Sbjct: 194 EQIKRESGINTNFENACSWDSIKNIP------ISTRIEYINKTVYEKLNDLYETDIFTPL 247 Query: 128 E--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + +L +I L V V + +E+ + + + ++ TPR +V Sbjct: 248 QIRDTSILKEIMDKLD--PLTLTDVDSDVKGDAFEYFL-KASTSTKNDLGEYFTPRHIVK 304 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----V 241 L+ +P + T+YDP CGTGGFL ++ H+ + + + Sbjct: 305 TMVRLV----------NPQIGETIYDPFCGTGGFLIESFRHIYNNMARTDANLKMLREKT 354 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-----LFTGKR----- 291 +G E+ T + M++ D NI+ +L+ + ++ Sbjct: 355 VYGNEIT-NTARITKMNMILAG-------DGHSNIKMKDSLANPIDGKSTYIDEKGEEHH 406 Query: 292 --FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + L+N P+ +K + ++G + + H K Sbjct: 407 NGYDIVLANMPYSQKTKYGNLYDL----------------PSNNGDSICVQHCI-KAVDS 449 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408 + GR A+V+ LF + R +LLEN ++++++LP +F T + T + Sbjct: 450 ASENGRIALVVPEGFLFRKDLT----KTREYLLENCQLQSVISLPQGVFLPYTGVKTDII 505 Query: 409 ILSN 412 + Sbjct: 506 YATK 509 >gi|167752500|ref|ZP_02424627.1| hypothetical protein ALIPUT_00751 [Alistipes putredinis DSM 17216] gi|167659569|gb|EDS03699.1| hypothetical protein ALIPUT_00751 [Alistipes putredinis DSM 17216] Length = 190 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 16/198 (8%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + IWK A+ + G+ +++ V+L L+ + E + + Sbjct: 1 MATMNTADIGFEREIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFETKYRQLVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113 G + + A FY +E + + +N I + K Sbjct: 59 ---GEGFEEDKDEYTAENIFYVPTEARWERIAAEAHTPEIGQVIDNAMRAIEKENKRLKD 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I + + L + F+ I +H ++ YE+ + +F + Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAEGKL 171 Query: 174 AEDFMTPRDVVHLATALL 191 A +F TP +V LL Sbjct: 172 AGEFYTPACIVKTLLMLL 189 >gi|313673365|ref|YP_004051476.1| restriction modification system DNA specificity domain [Calditerrivibrio nitroreducens DSM 19672] gi|312940121|gb|ADR19313.1| restriction modification system DNA specificity domain [Calditerrivibrio nitroreducens DSM 19672] Length = 865 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 75/440 (17%), Positives = 153/440 (34%), Gaps = 79/440 (17%) Query: 65 SNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNN--LESYIASF-----SDNAKAIF 115 ++D ES F+ +YS S++ + + L Y + + N +F Sbjct: 41 DDMDRESVEMGGKRGFFIGEYEKYSWSSIFNPYLGGHEMLNLYAEAITRMSQNPNLPELF 100 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + F + L K + + + +E+L+ GS+ A Sbjct: 101 RNI-FKNAYLPYRDPETLKLFLKTINEFTYDHSER----LGDAFEYLLLVLGSQG--DAG 153 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---- 231 F TPR ++ L+ P + DP CGT GFL A ++ Sbjct: 154 QFRTPRHIIDFMVELV----------GPKKNDLILDPACGTAGFLISAYKYIVRENTSEK 203 Query: 232 --------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 + + G ++ P+ + + M + + I Sbjct: 204 YRSSNGNGIGDLLTPEERKKLLTNFKGYDISPDMVRISLVNMYLHGF-------VDPKIF 256 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + TL+ + + L+NPPF K HK RF + +L Sbjct: 257 EYDTLTSEDRWNEYADVILANPPFMT-----PKGGIKPHK-----RFSVQ---SNRSEVL 303 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ ++A L GRAA+++ +F + ++R+ L+E + A+V+LP + Sbjct: 304 FVDYIAEHLTP----NGRAAVIVPEGIIFQSA--NAYKQLRKMLVEK-YLYAVVSLPAGV 356 Query: 398 FFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QIL 453 F + + T + ++ +++ + I + + G +RR I+ + Q++ Sbjct: 357 FQPYSGVKTSILLMDKALSKK-TDSILFIKIENDG---FDLGAQRRPIDKNDLPDALQVI 412 Query: 454 DIYVSRENGKFSRMLDYRTF 473 Y+ + + + Sbjct: 413 REYIDKVRNGKADEFNANEK 432 >gi|166363241|ref|YP_001655514.1| type I restriction-modification system DNA methylase [Microcystis aeruginosa NIES-843] gi|166085614|dbj|BAG00322.1| type I restriction-modification system DNA methylase [Microcystis aeruginosa NIES-843] Length = 292 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 53/309 (17%), Positives = 101/309 (32%), Gaps = 41/309 (13%) Query: 7 SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + ++ +WK A+ L ++ ++ ++ LR + V GG Sbjct: 6 NIEAIEKKLWKAADTLRANSNYASNEYFLPVMGLIFLRHAYSRFLKVKREVEADLPKRGG 65 Query: 65 SN---IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR--NNLESY---IASFSDNAKAIFE 116 + K A Y +++ + +L I I Sbjct: 66 KTRSLTKEDFLCKGAIY-LQEKAQFDFLVALPDSVNRSTSLMEAMLSIEGDYPPLGGILP 124 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 ++ +L + + + EL + IYE+ + +F + + + Sbjct: 125 KTEYQEL-----DNVVLGNLLRILNPEEL--KKADGDIFGRIYEYFLTQFANLKAHDNGE 177 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP +V L +L ++DP CG+GG + + V + Sbjct: 178 FFTPVSLVSLIANVL-----------EPDHGLVFDPACGSGGMFVQSAHFVERQRIN--- 223 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYC 295 P +L G E P T + + + LE D IQ+ T +D + Y Sbjct: 224 PQMLTFKGLEKNPTTIRLAKMNLAVHGLEGD--------IQKAITYYEDPLALAGKVDYV 275 Query: 296 LSNPPFGKK 304 ++NPPF Sbjct: 276 MANPPFNVD 284 >gi|315638030|ref|ZP_07893215.1| type I restriction-modification system DNA-methyltransferase [Campylobacter upsaliensis JV21] gi|315481878|gb|EFU72497.1| type I restriction-modification system DNA-methyltransferase [Campylobacter upsaliensis JV21] Length = 496 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 177/511 (34%), Gaps = 80/511 (15%) Query: 39 TLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYS-------FYNTSEY- 86 L+ L E +A+ E +Y + ++ ES+ F N + Sbjct: 31 LFLK-LYDYYEREWTALNEMNGTEYHSIIPEHLRWESWAIGQKSPTGEPLLTFINNELFP 89 Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 +L L N+ + +FED + ++ LL ++ Sbjct: 90 TLKAL-------NITESTPLNQSIVRKVFEDLN-----NYMKDGYLLREVIDEIESSLKI 137 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + + +YE ++ S + A +F TPR V +L SP + Sbjct: 138 HNRQDFKELCKVYESFLKTLQSAGN--AGEFYTPRAVTEFMVEML----------SPKLG 185 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 ++ D CGTGGFL A + + + + +G E + +C +LI + Sbjct: 186 ESVADLACGTGGFLISAAHFLEKQVSLTSERKVFETSFYGVEKKSLPFLLCATNLLINGI 245 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEH 316 E + N++ G+ F +F L NPP+G + Sbjct: 246 E-------NPNLKHGNAFEFSDFEDFDINLTKYPKFDIILMNPPYGG------------N 286 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + G + P K S+ + LF+ + ++L GR+A+VL LF A + + Sbjct: 287 ERGNDIKHFPQEYKSSETADLFMALILHRLSYK----GRSAVVLPDGFLF--GADNAKIN 340 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 ++R LL + + I+ LP +F T+I T L + + D+ I+ Sbjct: 341 LKRKLLSDFNLYLILRLPKSVFAPYTSIPTNLLFFNADPQGTQHTH---FYRLDMPEGIK 397 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 + G K + ++ + L + + +++ Y + ++ D G Sbjct: 398 SFG-KTKQMSLEHFTPFLAWWQGGKEVLQDESGNFKAKSYTK---EELESRNYNFDLCGY 453 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 E +I D L + I Sbjct: 454 VSEEEEILEPLELMEQIKTERDKLNATLDSI 484 >gi|201067988|ref|ZP_03217840.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni BH-01-0142] gi|200004432|gb|EDZ04944.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni BH-01-0142] Length = 140 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 4 FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62 + NFIW A+DL + + VILP T++RR++ LEPT+ V + Y + Sbjct: 2 EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61 Query: 63 GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117 +LES + + F+N S+++L TL N R N E+Y+ FS+N K I Sbjct: 62 KDEFENLESLLGGKQGNNLGFFNYSQFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121 Query: 118 FDFSSTIARLEKAGLLYKI 136 F F + + LE++ +L + Sbjct: 122 FKFKNQLDTLEESNILLVL 140 >gi|239502429|ref|ZP_04661739.1| putative restriction-modification protein [Acinetobacter baumannii AB900] Length = 778 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 138/373 (36%), Gaps = 61/373 (16%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ + + +E+ +++ + + ++ TPR + L+ +P Sbjct: 257 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 305 Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YDP CGTGGFLT+A +H+ D S G+E+ + M++ Sbjct: 306 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 364 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D I Q TL + + + ++N PF +K K K Sbjct: 365 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAK---- 411 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 +DG + ++H + GGR A+V+ LF +R++L Sbjct: 412 ----------NDGDGVCVLHCFKATKK----GGRMALVVPEGFLFKAALAP----VRKYL 453 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 EN ++A+V+LP ++F + T + +N V N T+ S+ + Sbjct: 454 FENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF--- 510 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVLRPLRMSFILDKTGLAR-- 497 RR I+++ + + + S Y G+ ++ +I + + Sbjct: 511 RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVNPELIRSNDYIYNYAHYSNSH 565 Query: 498 LEADITWRKLSPL 510 +++ KL L Sbjct: 566 IKSKFPTIKLKEL 578 >gi|228475644|ref|ZP_04060362.1| N-6 DNA methylase [Staphylococcus hominis SK119] gi|228270426|gb|EEK11861.1| N-6 DNA methylase [Staphylococcus hominis SK119] Length = 238 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 88/139 (63%), Gaps = 9/139 (6%) Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 I+ + LF+G G GES IR++++END +E I+ L DLF+ T I+TY+WI++ K+ Sbjct: 1 MTIIHNGFALFSGNPGGGESLIRQYVIENDWLEDIIQLSNDLFYNTEISTYIWIITKNKS 60 Query: 416 EERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKF--------SR 466 +R+GKVQLI+A++++ + +N GKKR I+ R I+ Y +N ++ S+ Sbjct: 61 PKRQGKVQLIDASNMYENRHKNIGKKRVDISKACREMIVQAYGEFDNKEYRFDDRTVESK 120 Query: 467 MLDYRTFGYRRIKVLRPLR 485 +L+ +FG+ R+ + RP R Sbjct: 121 ILNNESFGFTRVTIERPER 139 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 14/109 (12%) Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625 ++ + V NG DT+L + E I +YF REV P PDA +D+ Sbjct: 138 ERNENGNIVYKKNGNMSIDTSLRDTE------DINEYFQREVIPFSPDAKMDR------- 184 Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674 + ++GYEI F R FY+Y P + I +K +E I + ++ + Sbjct: 185 -KKDKIGYEIPFTRLFYKYTPPEPSETISERIKQLEESIVKNFQVLSGK 232 >gi|54024027|ref|YP_118269.1| putative restriction-modification system endonuclease/methyltransferase [Nocardia farcinica IFM 10152] gi|54015535|dbj|BAD56905.1| putative restriction-modification system endonuclease/methyltransferase [Nocardia farcinica IFM 10152] Length = 966 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 119/327 (36%), Gaps = 57/327 (17%) Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 ++S + + + F + GLL K+ + D +++YEHL+ + Sbjct: 106 AYSRHVEDV--RF-------TIPTPGLLAKVVDVLNEALSTGDA----EAADLYEHLLAK 152 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + F TP + L A+ +PG + DPTCGTGG LT A Sbjct: 153 VATAG--RFGAFRTPLHLTALMVAM----------TAPGPDDEVCDPTCGTGGLLTAAAQ 200 Query: 226 HVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + K HG + + + + + + +++ Sbjct: 201 FMLTSRSGTAQQSKAEVSGRLHGFDFDRTMLRLSSMRLALHG-------YGAADLRHRDN 253 Query: 282 LS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 LS + +R+ L+NPPF + + A E + +L + Sbjct: 254 LSVEAGTEFERYSVVLANPPFAGSVDYETAAPELLAAV-----------RTKKSEILHPI 302 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + L+ GGRAA+++ LF A E +RR L+E +EA+V LP+ F Sbjct: 303 AILRLLKP----GGRAAVIVPDGLLFGSTAAHAE--LRRILVEEHGLEAVVKLPSGTFKP 356 Query: 401 -TNIATYLWILSNRKTEERRGKVQLIN 426 ++T + + K + V + Sbjct: 357 YAGVSTAILFFT--KYAGQTDYVWFYD 381 >gi|169796762|ref|YP_001714555.1| putative restriction-modification protein [Acinetobacter baumannii AYE] gi|169149689|emb|CAM87580.1| conserved hypothetical protein; putative restriction-modification protein [Acinetobacter baumannii AYE] Length = 760 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 138/373 (36%), Gaps = 61/373 (16%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ + + +E+ +++ + + ++ TPR + L+ +P Sbjct: 262 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 310 Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YDP CGTGGFLT+A +H+ D S G+E+ + M++ Sbjct: 311 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 369 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D I Q TL + + + ++N PF +K K K Sbjct: 370 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAK---- 416 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 +DG + ++H + GGR A+V+ LF +R++L Sbjct: 417 ----------NDGDGVCVLHCFKATKK----GGRMALVVPEGFLFKAALAP----VRKYL 458 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 EN ++A+V+LP ++F + T + +N V N T+ S+ + Sbjct: 459 FENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF--- 515 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVLRPLRMSFILDKTGLAR-- 497 RR I+++ + + + S Y G+ ++ +I + + Sbjct: 516 RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVNPELIRSNDYIYNYAHYSNSH 570 Query: 498 LEADITWRKLSPL 510 +++ KL L Sbjct: 571 IKSKFPTIKLKEL 583 >gi|257794242|ref|ZP_05643221.1| type I restriction-modification system [Staphylococcus aureus A9781] gi|257788214|gb|EEV26554.1| type I restriction-modification system [Staphylococcus aureus A9781] Length = 237 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 33/238 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 LI RF + + A +F TP+ V + ++ D D +R +YDPTCG+G Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSL 237 >gi|301348334|ref|ZP_07229075.1| putative restriction-modification protein [Acinetobacter baumannii AB056] Length = 508 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 128/342 (37%), Gaps = 59/342 (17%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ + + +E+ +++ + + ++ TPR + L+ +P Sbjct: 210 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 258 Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YDP CGTGGFLT+A +H+ D S G+E+ + M++ Sbjct: 259 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 317 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D I Q TL + + + ++N PF +K K K Sbjct: 318 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAK---- 364 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 +DG + ++H + GGR A+V+ LF +R++L Sbjct: 365 ----------NDGDGVCVLHCFKATKK----GGRMALVVPEGFLFKAALAP----VRKYL 406 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 EN ++A+V+LP ++F + T + +N V N T+ S+ + Sbjct: 407 FENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF--- 463 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVL 481 RR I+++ + + + S Y G+ ++ Sbjct: 464 RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVNPE 500 >gi|168464564|ref|ZP_02698467.1| N-6 DNA Methylase family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632954|gb|EDX51408.1| N-6 DNA Methylase family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 417 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 119/332 (35%), Gaps = 59/332 (17%) Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 N SYI K IF + + + +I + + +T+ + ++ Sbjct: 62 NDNSYIKLNQKEFKLIFSNITLYDFSQSRDIKNYISRITEV---CNEYINTLSIHSILDL 118 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + LI E + TP ++V ++ + +DP CG+G Sbjct: 119 FTSLI----EENRPPTQKHYTPHEIVTFMGNIIQA----------QKGESFFDPACGSG- 163 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 +++ + + G E + + + ML+ L NI Sbjct: 164 ------EFISEIIKNQ-----VAISGSEYDVDRLKISKMKMLVNDL-------SPSNISP 205 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + + K+ F LSNPPF K D + G P S+ Sbjct: 206 --SYFTEGHNLKKNFDIILSNPPFSLKIPFDMEMHFCM----------YGKPPASNADFA 253 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL + L+ GRAAI+L LF E EIR+ +++N+ I AI+ LP + Sbjct: 254 FLQYCIFMLKD----NGRAAIILPDGILFR---EGKEYEIRKKIIKNNHISAIIYLPKGM 306 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATD 429 F T IAT + + + ++ + +IN Sbjct: 307 FKTTAIATNIIVFKKK---QKTNDILMINVRK 335 >gi|7467226|pir||T28670 hypothetical protein - Salmonella choleraesuis gi|1679865|emb|CAA68056.1| unnamed protein product [Salmonella enterica] Length = 417 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 118/332 (35%), Gaps = 59/332 (17%) Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 N SYI K IF + + + +I + + +T+ + ++ Sbjct: 62 NDNSYIKLNQKEFKLIFSNITLYDFSQSRDIKNYISRITEI---CNEYINTLSIHSILDL 118 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + LI E + TP +V ++ + +DP CG+G Sbjct: 119 FTSLI----EENRPPTQKHYTPHGIVTFMGNIIQA----------QKGESFFDPACGSG- 163 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 +++ + + G E + + + ML+ L NI Sbjct: 164 ------EFISEIIKNQ-----VAISGSEYDVDRLKISKMKMLVNDL-------SPSNISP 205 Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + + K+ F LSNPPF K D + G P S+ Sbjct: 206 --SYFTEGHNLKKNFDIILSNPPFSLKIPFDMEMHFCM----------YGKPPTSNADFA 253 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL + L+ GRAAI+L LF E EIR+ +++N+ I AI+ LP + Sbjct: 254 FLQYCIFMLKD----NGRAAIILPDGILFR---EGKEYEIRKKIIKNNHISAIIYLPKGM 306 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATD 429 F T IAT + + + ++ + +IN Sbjct: 307 FKTTAIATNIIVFKKK---QKTNDILMINVRK 335 >gi|213027397|ref|ZP_03341844.1| hypothetical protein Salmonelentericaenterica_35384 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 306 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 101/310 (32%), Gaps = 55/310 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + L +WK ++L + + L+ + Sbjct: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMC------------------KET 43 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSS 122 + + Y Y L S + L+ Y + ++ K + + F + Sbjct: 44 GQEAD----------YLPEGYRWDDLKSRIDQEQLQFYRKMLVHLGEDKKKLVQAV-FHN 92 Query: 123 TIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + + ++ N ++ + ++YE L+++ +E GA + TP Sbjct: 93 VCTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------- 233 R ++ LL P + DP GT GFL +A +V + Sbjct: 153 RPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 G EL P T + + L+ +E + + I+ G+TL D + Sbjct: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQA 260 Query: 293 HYCLSNPPFG 302 +NPPFG Sbjct: 261 DIVATNPPFG 270 >gi|78064669|ref|YP_367438.1| N-6 DNA methylase [Burkholderia sp. 383] gi|77965414|gb|ABB06794.1| N-6 DNA methylase [Burkholderia sp. 383] Length = 605 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 80/459 (17%), Positives = 154/459 (33%), Gaps = 69/459 (15%) Query: 42 RRLECALEP-TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100 +R + + TR + S A + Y+ + + N NNL Sbjct: 168 KRNDWIFDEFTRFLFIKLNEDAKPSGS-----FTTAKLTSYSEQNKHMGDKAAQNFINNL 222 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + + F+ R L KA + ++ GI L V+ + Sbjct: 223 FDDLKAHHPEV--------FTDENERVLSKAATVERVIARLEGINL--KDTQGDVLGRAF 272 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E ++ + F TPR++V L + + + D G+GGF Sbjct: 273 EIMLSDTFK--GKDLGQFFTPREIVAFMLDLARENPEGPALDI-SKGERFLDGCAGSGGF 329 Query: 220 LTDAMNHVADCGSHH-----------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 L A V + E+E + + M++ + + Sbjct: 330 LIAAYEDVYKHALSSTIRGDERENLLRRLGQETFFACEIEEKAARLGKLNMIVHAVNAQN 389 Query: 269 RRDLSKN-------------IQQGSTLSKDLFTGK----RFHYCLSNPPFGKKWEKDKDA 311 + L +N I+ + + L+NPPFGK + + Sbjct: 390 AQWLHQNYLYNEERGGLKPLIEYEVDFGEGKKKRQIGSSSIDLILTNPPFGKSVKTENVL 449 Query: 312 VEKEHKNGELGRFGPGLPKIS------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 ++ + + G P D +LF+ H L+ GG+ IVL L Sbjct: 450 LDYQFGHEVKTFKSAGRPPEKRAKNSQDSEVLFIEHYLRTLKP----GGKLLIVLPDGVL 505 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQ 423 N A +R ++ E+ +I+++++LP++ F T I T + L ++ + +G + Sbjct: 506 SNATA----KPVRDYIREHAIIKSVISLPSETFASTGTSIPTNVVFLQKKRPGDVQGDIF 561 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + A + R G + ++ IL+ Y + G Sbjct: 562 M--ARADYVGRRANGD---PLKENDLPFILEKYREWQTG 595 >gi|258627227|ref|ZP_05722015.1| Type I restriction-modification system methyltransferase subunit [Vibrio mimicus VM603] gi|258580529|gb|EEW05490.1| Type I restriction-modification system methyltransferase subunit [Vibrio mimicus VM603] Length = 241 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 82/250 (32%), Gaps = 27/250 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + +W A L G + +++ V+L L+ + E R + + Sbjct: 2 MAKAPTNKKGFEETLWDTATQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRQQLID--- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFED 117 G F+ S + + ++++ I S + E Sbjct: 59 -GGMEAFVDMPEFYQQDNVFFLEEYARWSFVKARAKQDDIALIIDSALKAIEGKNKALEG 117 Query: 118 FDFSSTIARLE-KAGLLYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGS 168 + + + + L + I+ + D + ++ +Y++ + RF + Sbjct: 118 ALQDNYFSHMGLETQKLASLIDAIENIDTYVHEESANECDMSEEDLVGRVYKYFLGRFAA 177 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +F TP+ VV L +L +YDP CG+GG ++ V Sbjct: 178 TEGKDGGEFYTPKSVVTLLAEML-----------EPFQGKIYDPCCGSGGMFVQSLKFVE 226 Query: 229 DCGSHHKIPP 238 K P Sbjct: 227 SHQGRVKTSP 236 >gi|331002121|ref|ZP_08325640.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411215|gb|EGG90631.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon 107 str. F0167] Length = 262 Score = 134 bits (337), Expect = 6e-29, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 35/243 (14%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----------RSAV 55 + LA IW++A + + ++ IL F + L E + V Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDKEEQDLYNRGYDADNIKEYV 61 Query: 56 REKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 E+ S S + GY Y + +G+ T +N+ + ++SFS N Sbjct: 62 NEEADDSYSS---RSSLQQDLGYFIAYKDLFSTWINMGADFTVDNVRTGLSSFSRNISPS 118 Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + F+ LE + + + + + I V+ IYE+L Sbjct: 119 HKKL-FNGIFTTLEVGLSKLGADTKSQTKAVSDLIQLINVI-PMNSRHDYDVLGFIYEYL 176 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I RF S + A +F TP +V L + ++ + + +YDPT G + Sbjct: 177 IERFASNAGKKAGEFYTPHEVSLLMSEIIAE------FLNRRDTIKIYDPTSGFRVIIMT 230 Query: 223 AMN 225 N Sbjct: 231 VAN 233 >gi|260579103|ref|ZP_05847001.1| type I restriction-modification system, M subunit [Corynebacterium jeikeium ATCC 43734] gi|258602788|gb|EEW16067.1| type I restriction-modification system, M subunit [Corynebacterium jeikeium ATCC 43734] Length = 207 Score = 133 bits (336), Expect = 8e-29, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 30/199 (15%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L + +WK+A++L G + + +L ++ + + Sbjct: 6 KKSDLYSSLWKSADELRGGMDASQYKDYVLTLLFVKYVSD----------------KAKS 49 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSD--NAKAIFEDFDFSST 123 G SF L + + + I ++ + + + + DF Sbjct: 50 DPYSLIEVPEGGSF-----DDLVAVKGAPDIGERMNIAIRRLAEENDLQGVINNADFDDP 104 Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +L + L + F I+ D ++ + YE+L+R F +E + F Sbjct: 105 -NKLGEGKAMQDRLTNLISIFQDIDFTGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFY 163 Query: 179 TPRDVVHLATALLLDPDDA 197 TP +V + +L P DA Sbjct: 164 TPAEVSRIMAQVLEIPKDA 182 >gi|281418675|ref|ZP_06249694.1| N-6 DNA methylase [Clostridium thermocellum JW20] gi|281407759|gb|EFB38018.1| N-6 DNA methylase [Clostridium thermocellum JW20] Length = 410 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 77/444 (17%), Positives = 144/444 (32%), Gaps = 93/444 (20%) Query: 1 MTEFTGSAA--SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M + L + +W A D K T++ + F L+ + R RE Sbjct: 1 MAQNNNKVDFHRLGSELWDIANIFRDDTLKTTEYLEEFSYFLFLKLFD-----EREKQRE 55 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLESYIASFSDNAKA 113 + G+ + F +E L T+ + N + Y+ + Sbjct: 56 ELARLDGTKFVPDLPNH---LRFSTWAEKILASDGKTVKTDNGEFTIVDYVRNIFSELAE 112 Query: 114 IFEDFD---------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + + F + I R+ + + ++ K +EL VM YE +++ Sbjct: 113 VKDHDGRDLSLFRRLFKNHIWRIRYSPTIKELIKRLKDLEL---EQNFDVMGRAYEFVVQ 169 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + G + + + TPR ++H L P + +YDP GTGGF+ A Sbjct: 170 KLGEQ--KQYGQYFTPRHIIHFMVEL----------ADPEIGEKIYDPAAGTGGFILRAF 217 Query: 225 NHVADCGSH--------------------------HKIPPILVPHGQELEPETHAVCVAG 258 V + ++ + E P+ + + + Sbjct: 218 EVVKSKIDNLVKAGMRVNESTAAYNGVQFDEAEMLYRKLKEESLYAVEKAPDVYKLALMN 277 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 M++ D N+ + +L +++ L+NPP+G + E Sbjct: 278 MILHN-------DGKSNLFEADSLDNRAQLEHKEKYDVVLTNPPYGPLAQSRVGTFEFHA 330 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGE 374 K E LF+ H+ L P RA +++ LF S Sbjct: 331 KRYEA---------------LFIQHIMAALRPSEPAKKHSRAVVIILDKILF--DNSSVF 373 Query: 375 SEIRRWLLENDLIEAIVALPTDLF 398 IR LL ++A+ ++P F Sbjct: 374 KNIRMKLLREFDLKAVFSMPGRHF 397 >gi|67920717|ref|ZP_00514236.1| Type I restriction-modification system, M subunit [Crocosphaera watsonii WH 8501] gi|67856834|gb|EAM52074.1| Type I restriction-modification system, M subunit [Crocosphaera watsonii WH 8501] Length = 333 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 122/338 (36%), Gaps = 60/338 (17%) Query: 38 FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 L+ + E + + L + + E F N S L Sbjct: 33 MLFLKIFDDREMEAELFEDDYISAMPEGLRWRDWAANDEGMTGETLLDFVN------SKL 86 Query: 92 GSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 + +L + S K FED F+F ++ L+ ++ + I+ + Sbjct: 87 FKSLKNLDLSTSNNPKSRILKEAFEDGFNF------MKNGTLIRQVINKINEIDFNNS-Q 139 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + IYE +++ + + A ++ TPR V ++ P + + Sbjct: 140 DKHLFGEIYEKILKDL--QNAGNAGEYYTPRAVTQFMVNMI----------KPQLGERIL 187 Query: 211 DPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 DP CGTGGFLT A+NH+ + + G E +P H +C+ +L+ ++ Sbjct: 188 DPACGTGGFLTCALNHLRKQVKTVEEREKLSHLIMGVEKKPLPHLLCITNLLLHEID--- 244 Query: 269 RRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + +++ +TL+ + L+NPPFG K ++G G F Sbjct: 245 ----APKVRRDNTLANPLRNYQPSDKVEVILTNPPFGGKE-----------EDGIEGGFP 289 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + FL+ + + L GGR IVL Sbjct: 290 KAYQTKETADL-FLVLIIHLL----EVGGRGGIVLPDG 322 >gi|319938833|ref|ZP_08013197.1| type I restriction-modification system [Streptococcus anginosus 1_2_62CV] gi|319811883|gb|EFW08149.1| type I restriction-modification system [Streptococcus anginosus 1_2_62CV] Length = 226 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 75/221 (33%), Gaps = 23/221 (10%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + + + +W A+ L G +++ KVI+ L+ + A E + + Sbjct: 1 MAKKSNANIGFEKELWNAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 G + + F+ + S + + + + + ++ Sbjct: 59 ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIED--DNPSL 113 Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + + ++ +L ++ F+ I + + ++ YE+ I +F + + Sbjct: 114 DNVLPQIYASPDLDKRVLGEVVDIFTNINMFEGSEEKDLLGRAYEYCIEQFAAHEGKRGG 173 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +F TP +V +L +YDP CG Sbjct: 174 EFYTPTSIVKTIVEIL-----------KPFRGRVYDPACGF 203 >gi|227892230|ref|ZP_04010035.1| type I site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus salivarius ATCC 11741] gi|227865952|gb|EEJ73373.1| type I site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus salivarius ATCC 11741] Length = 471 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 75/436 (17%), Positives = 158/436 (36%), Gaps = 61/436 (13%) Query: 116 EDFDFSSTIARL----EKAGLLYKICKNFSGIELHPDTVP-DRVMSNI-----YEHLIRR 165 F + I L +K +L + K+ G + M + +E L+ Sbjct: 82 RKFKYEDLIKSLYKIEKKNPVLKNMFKDIKGSNMAGRVADLIFAMMYLKKEPSFEELLDW 141 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 +E +TP + L L+ + + T+YDP GT L Sbjct: 142 IARSSGSRSEFSITPLSINKLMVKLVGSFKENI---------TVYDPAVGTANLL----- 187 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + +GQ++ + +++ + S ++ G +L+ + Sbjct: 188 ----LNVDSENFEKNKYYGQDINKFVLEIAKMNAILQDINSKNIE-----LKLGDSLNSN 238 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 G + +++ P W KD + LP + F++ +K Sbjct: 239 WNFG-KADVVVADMPLAMSWRPSKDLEQDNRYKNY-----GKLPNKN--EWPFILEGLDK 290 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L G + + LF E ++RR LLE+ +I+A++ LP L++ T++AT Sbjct: 291 LSAD----GTMIALSAQGILFRAAK---EYKVRRKLLEDGMIKAVILLPEKLYYGTSVAT 343 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464 L +L K + V INA+ + +++ ++ DD +I+D++ +++ K F Sbjct: 344 CLLVL---KKSSKDRDVFFINASKEYQKVKS----NNVLTDDNIGKIVDVFNNQKEIKNF 396 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILKPM 522 SR + + + + +I +L + L+ + + L + Sbjct: 397 SRKISFEEIQKNDFNL---IMARYINQYQFQEKLNQQKEFENLTKIDNKIGNVDEKLNKI 453 Query: 523 MQQIYPYGWAESFVKE 538 M+++ + K Sbjct: 454 MRELVTDDKLKEIEKL 469 >gi|325125904|gb|ADY85234.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 479 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 69/358 (19%), Positives = 124/358 (34%), Gaps = 44/358 (12%) Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 P+ + L +L +++DP +G L K Sbjct: 153 APKQMRKLIAEILNSEVKTE-------KVSIFDPVAMSGSLLLTLKE---------KFQS 196 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLS 297 + +G+E + + M+I ++ D N +G L + F +F Sbjct: 197 KVELYGEEFSSDLFRLLKMNMVIHGIDIQTIHD---NFVRGDFLKDEEFDANSKFDIIPM 253 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PPF + E N LP S +++ L G A Sbjct: 254 TPPFSS------WDADPELLNDPCFSEVGVLPPKSKADYAYVLRGLQHLSED----GTMA 303 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 ++L + LF E EIR++LLE I A+++LP I T L I +K+ Sbjct: 304 VMLPTGALFRSAT---EGEIRKYLLEKQNIHAVISLPQGARNYMAIYTVLLIFKQKKS-- 358 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR 476 K+ I+A+ K+ + ++ +IL IY +RE +SR++ Sbjct: 359 --DKILFIDASRDGVKNATR-LKQNFLTEEGFTKILHIYRNREEVDRYSRLVSLDEIREN 415 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + P +D +++ + T LS Q K M++ + + E+ Sbjct: 416 DYNLNIPRY----IDTFSEKKIDVEATISSLSA-KQRVIEKSKKEMIELLNKFDTPEA 468 >gi|307268427|ref|ZP_07549805.1| N-6 DNA Methylase [Enterococcus faecalis TX4248] gi|306515234|gb|EFM83771.1| N-6 DNA Methylase [Enterococcus faecalis TX4248] Length = 230 Score = 130 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%) Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPP+ KW D ++ R+G L S FL+H L+ G Sbjct: 1 MNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFLLHGYYHLKDS----GTM 51 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 AIVL LF G A E IR+ LLE+ I A++ +P +LFF T+I T + IL + Sbjct: 52 AIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFFGTSIPTTVIILKKNRDN 108 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 V I+A+ +T GK + + + +I+ Y+ R++ + Sbjct: 109 R---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIERQDVE 148 >gi|325122266|gb|ADY81789.1| type I restriction-modification system methyltransferase subunit [Acinetobacter calcoaceticus PHEA-2] Length = 1313 Score = 130 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 90/531 (16%), Positives = 180/531 (33%), Gaps = 75/531 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLG 92 F LL R + + + ++ + + N ++ +L++ Sbjct: 29 FLLL-RWQDVKDEEKQ-FIAEFEGSEYVPLFPTTLQMRNWADLINPADVIEKINTLASHI 86 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N + + + + A L+ + + ++L P T P Sbjct: 87 ERNNAEKFNTAGFGYLKHLHNPLHHI-------QSIDASLMLPVIQWLCSLQLTPLTAPK 139 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +S+I+E ++ +F + + HL L+ +P ++YDP Sbjct: 140 I-LSDIFERIL---TETRDSNDGEFSSSESLSHLIAELI----------NPKSGESIYDP 185 Query: 213 TCGTGGFLTDAMN-HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 GTG FL A N L G ++ + +++ + Sbjct: 186 CFGTGNFLISAWNLFQLRQIKQQNSGNTLQVSGNDINISAFLTGLTKIVLSGV------- 238 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 S + G++L + F +++PP G K + F P Sbjct: 239 PSTQLTLGNSLDDNSSKDAAFDIVVAHPPVGIKAHSNVHYYRH---------FQFKSP-- 287 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 D + LF+ ++L+ GRA IV+ LF G A ++R+ LL N +++A+V Sbjct: 288 -DITGLFVQQAISRLKT----NGRAVIVVPEGFLFRGGAD---RDLRKHLLTNGMVQAVV 339 Query: 392 ALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 LPT + +NI L +L+ VQ+++A +L K + Sbjct: 340 GLPTGVIISGSNIRGCLLVLNKN---GNFHHVQMVDAKNLKGL--RAASKASSLFQLDAE 394 Query: 451 QILDI-----YVSREN-------GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLA 496 ++ ++ Y RE+ + S +D T Y R+ V + L Sbjct: 395 KLSNLILGQDYREREDSSSRSYLDETSIQVDEDTEDYVEWRVSVPELAETDWDLTPRRRE 454 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 R E + + + ++D L + + + +++AK Sbjct: 455 RNELLNALKPFTKASDTSYVDQLSTISSIFLGRTIKAVDLTSAPHNDQAKG 505 >gi|160885909|ref|ZP_02066912.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483] gi|156108722|gb|EDO10467.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483] Length = 221 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 100/231 (43%), Gaps = 24/231 (10%) Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELP 349 ++NPPF KW D ++ E RF L S F++ + +KL Sbjct: 1 METVIANPPFSAKWSADVSFMDDE-------RFSEVGKLAPKSKADYAFVLDIVHKL--- 50 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLW 408 + G AAIVL LF G A E IRR+L+E + I+A++ LP ++F+ T+I T + Sbjct: 51 -DVTGIAAIVLPHGVLFRGAA---EGVIRRFLIEDKNCIDAVIGLPANIFYGTSIPTCIL 106 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467 ++ +K + + I+A+ + ++N + ++D+Q +I+ + R+ K+S Sbjct: 107 VI--KKCRKEDENILFIDASKDFEKLKN----KNSLSDEQIDKIVQTFQERKEIKKYSHC 160 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 + + P + ++ + ++L +I Sbjct: 161 ATLQEVMANDFNLNIPRYIDVFEEEEPIDIKAVMDEIKELEAKRAELDKEI 211 >gi|19881220|gb|AAM00833.1|AF486547_2 HsdM [Campylobacter jejuni] Length = 348 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 70/355 (19%), Positives = 123/355 (34%), Gaps = 64/355 (18%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258 YDP+CG+ GFL ++ H+ G+E P ++A+ V Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ + S NI + +TLSK D+ +++ L+NPPFG K ++ Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILANPPFGGKEKEQIQENF-- 308 Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 P S+ +LFL H+ L+ GR AI++ LF Sbjct: 309 -------------PIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLFQNS 346 >gi|283797241|ref|ZP_06346394.1| type I restriction-modification system DNA methylase [Clostridium sp. M62/1] gi|291075091|gb|EFE12455.1| type I restriction-modification system DNA methylase [Clostridium sp. M62/1] Length = 214 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 18/167 (10%) Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 +E+ +I TL + F +SNPP+ KWE D + V Sbjct: 59 IEAGNDGFDKFDIAHEDTLLNPQHWDDEPFEVIVSNPPYSIKWEGDDNPV-----LINDP 113 Query: 323 RFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 RF P L S + F+MH L G AAIV ++ G A E +IR++ Sbjct: 114 RFSPAGVLAPKSKADLAFIMHSLAWLAT----NGTAAIVCFPGIMYRGGA---EKKIRQY 166 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 L++N+ I+ I+ LP++LFF T+IAT + +L K + I+A Sbjct: 167 LIDNNFIDCIIQLPSNLFFGTSIATCIMVLKRNKADNNT---LFIDA 210 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 15/39 (38%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL 48 L IW A++L G DF +L R + L Sbjct: 12 ELHRAIWAIADELRGSVDGWDFKSYVLGMMFYRYISENL 50 >gi|168698328|ref|ZP_02730605.1| Type I site-specific deoxyribonuclease, methylase subunit [Gemmata obscuriglobus UQM 2246] Length = 207 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 25/215 (11%) Query: 320 ELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 E RF G+ S FL+H + L+ G AI+L LF G A E IR Sbjct: 3 EDPRFKAHGVAPKSAADFAFLLHGLHDLKDD----GVMAIILPHGVLFRGGA---EERIR 55 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 LL + I+ ++ LP +LF+ T I + +L K E V INA + + G Sbjct: 56 TKLLTDGHIDTVIGLPPNLFYSTGIPVCVLVLKKCKKPE---DVLFINAAEHFAK----G 108 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 K++ + + +I+ Y R RR+ + + L+ + Sbjct: 109 KRQNRLEPEHIARIIATYQDRPE--------KVERYARRVGMKEIEANEYNLNISRYVST 160 Query: 499 EADITWRKLSPLHQS--FWLDILKPMMQQIYPYGW 531 KL +H + L+ ++ + Sbjct: 161 AEQEGEVKLDEVHSELVAIENALRAATEKHNRFLK 195 >gi|32263452|gb|AAP78480.1| M.AhdI [Aeromonas hydrophila] Length = 532 Score = 127 bits (320), Expect = 6e-27, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 116/324 (35%), Gaps = 52/324 (16%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++++ V G + TP++V+ ++ SP + + DP Sbjct: 246 DIKGRAFQNVL---LPAVRSGMGQYFTPKEVIDFIICMM----------SPNVRELVVDP 292 Query: 213 TCGTGGFLTDAMNHVADCGSHHKI----PPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 CG+G FLT A+++V + HG E + + M + Sbjct: 293 FCGSGHFLTSALDYVRNSHGKADKLFHEFAFTRLHGIEKSDRMVRIAMTDMRLHG----- 347 Query: 269 RRDLSKNIQQGSTLSK-DLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 D NI+ L D + + F ++NPPFG D + + Sbjct: 348 --DGHSNIRCTDALLPFDNYPDLYRETFDLVVTNPPFGVDLPADALHQFGPFELALDRKT 405 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 L ++ L L+ GGR AIV+ L N +R WL+E+ Sbjct: 406 AISL------EIVALERCLQLLKP----GGRMAIVIPDGVLSNKNTQY----VRDWLVEH 451 Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRG---KVQLINATDLWTSIRNEGK 439 +I AIV+LP + F F NI T + +L + E KV + +++ Sbjct: 452 AVIRAIVSLPIETFSPFGANIKTSVLVLRKLRPNEDISKLRKVFMSEISNVGYDASG--- 508 Query: 440 KRRIINDDQRRQILDIYVSRENGK 463 R + ++L + + Sbjct: 509 --RPCSSSDLDELLSEFRDFVAKE 530 >gi|197106985|ref|YP_002132362.1| type I restriction-modification system methyltransferase subunit [Phenylobacterium zucineum HLK1] gi|196480405|gb|ACG79933.1| type I restriction-modification system methyltransferase subunit [Phenylobacterium zucineum HLK1] Length = 825 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 68/343 (19%), Positives = 120/343 (34%), Gaps = 62/343 (18%) Query: 125 ARL-EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +L E+A + I + + L + + +YE F + TPR + Sbjct: 255 EKLAERARRIATILERLNVTVLTAEH---DYLGQLYETF---FRYTGGNTIGQYFTPRHI 308 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---- 239 + L D + DP CGTGGFL M+ + + ++ + Sbjct: 309 ARMMADLCGVGKDDVI----------LDPACGTGGFLIACMDRILHQHTISRVQMVKVVA 358 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +G E EP T A+CVA M++R D S I Q L+ F L+NP Sbjct: 359 KQLNGFESEPVTAALCVANMILRG-------DGSTGIHQADALTSPEFPAGLATVALTNP 411 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PF HK + + F+ L GGR A++ Sbjct: 412 PF-------------PHKKTDTP------------AEAFVDRALEGL----QTGGRLAVI 442 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418 L +S L G R +L+++ + + LP +LF T + +L + + Sbjct: 443 LPTSTLVKQDKGG----WRAQILKHNSLLGVCQLPDELFQPFAAATTSVVLLEKGRPHDP 498 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + K + +R + R ++ ++ +++ Sbjct: 499 KRKTAFVRLHHDGFVLRKGARIERASEPNEIPAAVEALLNKTE 541 >gi|126440241|ref|YP_001060649.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA methylase [Burkholderia pseudomallei 668] gi|126219734|gb|ABN83240.1| putative type I restriction-modification system, M subunit [Burkholderia pseudomallei 668] Length = 866 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 126/395 (31%), Gaps = 61/395 (15%) Query: 36 LPF---TLLRRLECALEPTRSAVREKYLAFGGSNID--------LESFVKVAGYSFYNTS 84 LPF LR+L A+R+ D L F Sbjct: 164 LPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPY 223 Query: 85 EYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 Y+ L + +++ I + D + L+ A + + + Sbjct: 224 SYTFHELAALPDAKADQVQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAA 283 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + T +E+ +R + + + TPR +V L +A++ S Sbjct: 284 VSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLS 339 Query: 203 PGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH-------KIPPILVPHGQEL 247 + DP CGTGGFL A +AD + + V G + Sbjct: 340 GAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDA 399 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGK 303 M++ D NIQ ++L++ + L+NPPFG Sbjct: 400 NEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGT 452 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + ++G+F K G +LFL K+ L GG V+ Sbjct: 453 SESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KMVLSARRGGEICTVIDEG 498 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L A IR+WLL + A+V LP + F Sbjct: 499 VLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 529 >gi|254198485|ref|ZP_04904906.1| putative type I restriction-modification system M subunit [Burkholderia pseudomallei S13] gi|169655225|gb|EDS87918.1| putative type I restriction-modification system M subunit [Burkholderia pseudomallei S13] Length = 866 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 126/395 (31%), Gaps = 61/395 (15%) Query: 36 LPF---TLLRRLECALEPTRSAVREKYLAFGGSNID--------LESFVKVAGYSFYNTS 84 LPF LR+L A+R+ D L F Sbjct: 164 LPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPY 223 Query: 85 EYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 Y+ L + +++ I + D + L+ A + + + Sbjct: 224 SYTFHELAALPDAKADQVQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAA 283 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + T +E+ +R + + + TPR +V L +A++ S Sbjct: 284 VSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLS 339 Query: 203 PGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH-------KIPPILVPHGQEL 247 + DP CGTGGFL A +AD + + V G + Sbjct: 340 GAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDA 399 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGK 303 M++ D NIQ ++L++ + L+NPPFG Sbjct: 400 NEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGT 452 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + ++G+F K G +LFL K+ L GG V+ Sbjct: 453 SESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KMVLSARRGGEICTVIDEG 498 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L A IR+WLL + A+V LP + F Sbjct: 499 VLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 529 >gi|53720725|ref|YP_109711.1| putative restriction modification system methylase [Burkholderia pseudomallei K96243] gi|167740436|ref|ZP_02413210.1| putative restriction modification system methylase [Burkholderia pseudomallei 14] gi|167817648|ref|ZP_02449328.1| putative restriction modification system methylase [Burkholderia pseudomallei 91] gi|52211139|emb|CAH37128.1| putative restriction modification system methylase [Burkholderia pseudomallei K96243] Length = 866 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 126/395 (31%), Gaps = 61/395 (15%) Query: 36 LPF---TLLRRLECALEPTRSAVREKYLAFGGSNID--------LESFVKVAGYSFYNTS 84 LPF LR+L A+R+ D L F Sbjct: 164 LPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPY 223 Query: 85 EYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 Y+ L + +++ I + D + L+ A + + + Sbjct: 224 SYTFHELAALPDAKADQVQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAA 283 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + T +E+ +R + + + TPR +V L +A++ S Sbjct: 284 VSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLS 339 Query: 203 PGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH-------KIPPILVPHGQEL 247 + DP CGTGGFL A +AD + + V G + Sbjct: 340 GAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDA 399 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGK 303 M++ D NIQ ++L++ + L+NPPFG Sbjct: 400 NEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGT 452 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + ++G+F K G +LFL K+ L GG V+ Sbjct: 453 SESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KMVLSARRGGEICTVIDEG 498 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L A IR+WLL + A+V LP + F Sbjct: 499 VLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 529 >gi|223933198|ref|ZP_03625189.1| N-6 DNA methylase [Streptococcus suis 89/1591] gi|223898128|gb|EEF64498.1| N-6 DNA methylase [Streptococcus suis 89/1591] Length = 419 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 68/410 (16%), Positives = 130/410 (31%), Gaps = 52/410 (12%) Query: 164 RRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 R F E + + TP V L + ++L D GTG Sbjct: 50 RDFFQEEGADRKKLKQDYTPDGVAELLARV------------SRGGKSLADICAGTGSLT 97 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQ--ELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQ 277 +N+ + + A+ +I +IQ Sbjct: 98 IQYLNY----HPDVEFVRCEEFSAKVIPFLLINLAIRKIDAEVIHGDSLTRECFNVYSIQ 153 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSM 336 G D + ++ +SNPP+ W RF GL + Sbjct: 154 DGVISQIDSPSDRKVEVVISNPPYSMAWTPIS-----------DERFDLFGLAPKTKADF 202 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 FL+H ++L GG +++L LF E IR+ LLE+ I+ I+ L + Sbjct: 203 AFLLHGFHQL----EDGGSMSLILPHGVLFRAN---SEGAIRQQLLEHGAIDTIIGLAPN 255 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 LF T I + +L ++++ V ++A D +T GK + ++ + ++I + Sbjct: 256 LFLNTGIPVAILLLRKGRSQK---DVFFVDAKDEFTK----GKAQNSLDVEHIKKITSVV 308 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 R + + L R + L + R+L + + Sbjct: 309 SLRMTTERFSYIADWEKLVENGFNLNIPRYVDTFIPEEVQPLGVIL--RELIEIDRE-IA 365 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 + + + + K++ E + ++ K + I Sbjct: 366 ETEREFARLFGQLVATD-PTKQAELEAEQELMREYVDKPRLSKLITEESE 414 >gi|206895207|ref|YP_002246423.1| N-6 DNA methylase [Coprothermobacter proteolyticus DSM 5265] gi|206737824|gb|ACI16902.1| N-6 DNA methylase [Coprothermobacter proteolyticus DSM 5265] Length = 209 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 15/180 (8%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M T +L N++W+ A + G F ILP L+RL E V Sbjct: 1 MATNTLDLPTLENWLWEAACKIRGPVDAPKFKDYILPLIFLKRLSDVFE---DEVNHLAE 57 Query: 61 AFGGSNIDLESFVKVAGY-----SFYNT--SEYSLSTLGSTNTRNNLES---YIASFSDN 110 FG +++ + + + FY + + + +T L +A + Sbjct: 58 EFGSTDVAWKLVEEAHQHGQPLVRFYLPPEARWDVIRQKTTGLGEYLTDVMRAVARENPK 117 Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + + DF++T R+ L ++ + S L V ++ YE+L+R+F Sbjct: 118 LHGVIDVVDFNATAAGQRIIDDPPLAELIQVLSKYRLGLKDVEPDILGRAYEYLLRKFAE 177 >gi|158521274|ref|YP_001529144.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158510100|gb|ABW67067.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 1362 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 86/462 (18%), Positives = 161/462 (34%), Gaps = 66/462 (14%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 L + A E AF G+ + + +++ S LS + + L Sbjct: 29 LYLRWADFQEAELEAMAAFEGTEYEPVLPASLHWRTWHQLSPEDLSNVLTRQLPVAL-DQ 87 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + +F N A ++ +L +L + R + +I Sbjct: 88 LKNFRHNPMATHLH-RLAAPTRKLGDLPPKILANTVSRLAEKPFETPADHRRALKDID-- 144 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 RFG TP + L +P ++YDP GT L Sbjct: 145 --GRFGEA---KDGYHTTPLYLTKFMVEL----------AAPSKGESIYDPCFGTADLLI 189 Query: 222 DAMNHVADCGSHHKIPP-ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 ++HV+ + + G E + V + +++ I+ G+ Sbjct: 190 TTIDHVSGQQENTGYNMESVNISGVEKNISAYIVGMTRLVLAG-------ASDPKIELGN 242 Query: 281 TLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSM 336 +L + + F L+ PP+G + K+ +E K R G Sbjct: 243 SLERTAPANPQQDGFDVVLATPPWGAIHKILKEEIELNGKYYPVRTRGRAG--------- 293 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LF+ H L GRA I + S LF G E +R WL+EN +EA+++LP + Sbjct: 294 LFIQHALANLRPD----GRAIIAVPQSLLF----GDTEINLRAWLIENHTVEAVISLPPN 345 Query: 397 LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 +F +I + + +L + + +++++NA + R GK+ I+D Q ++ + Sbjct: 346 VFGALISIPSGILVLRRGGSTK---QIRMVNAEPFFEQGR--GKQPTTISDSQIHSLVAM 400 Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 + E ++ ++V + F L R Sbjct: 401 IRNPEQSQYC----------WDVEVESLAELGFDLTPRRRDR 432 >gi|257466226|ref|ZP_05630537.1| type I restriction-modification system DNA methylase [Fusobacterium gonidiaformans ATCC 25563] gi|315917383|ref|ZP_07913623.1| type I restriction-modification system DNA methylase [Fusobacterium gonidiaformans ATCC 25563] gi|313691258|gb|EFS28093.1| type I restriction-modification system DNA methylase [Fusobacterium gonidiaformans ATCC 25563] Length = 267 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 86/244 (35%), Gaps = 39/244 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----CALEPTRSAVR 56 M E T A L IW A+++ G DF + IL R + + Sbjct: 1 MNETTQ-RAELHRKIWAIADNVRGAVDGWDFKQYILGILFYRFISENMTDFFDSAEQEAG 59 Query: 57 E---KYLAFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTN-TRNNLESYIA------ 105 + +Y +++ F+ + T T NL + +A Sbjct: 60 DLEFRYAELSDKEAEMDFRPNTVEDKGFFILPSQLFENIVKTARTNENLNTDLANIFKAI 119 Query: 106 -----SFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152 F+ D+ K +FED D +T RL EK L I + I Sbjct: 120 EGSAVGFASEDDIKGLFEDVD--TTSNRLGSTVAEKNKRLADILTGIASINFDDFKNNDI 177 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE+LI + S + +F TP+ V L L+++ + + K +YDP Sbjct: 178 DAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMEGKETINK--------VYDP 229 Query: 213 TCGT 216 TCG Sbjct: 230 TCGF 233 >gi|326802729|ref|YP_004320547.1| hypothetical protein HMPREF9243_0135 [Aerococcus urinae ACS-120-V-Col10a] gi|326651519|gb|AEA01702.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a] Length = 262 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 37/248 (14%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVRE----- 57 + ++ +W +A L ++ L + L LE T + E Sbjct: 1 MSEQVTTIQQALWNSANVLRSKMDANEYKNYTLGIIFYKFLSDQLLEKTCDLMGEDFVDL 60 Query: 58 -----KYLAFGGSNIDLESFVKVAGYSF-YNTSE-YSLSTLGSTNTRNNLESYIASFSDN 110 Y D E + Y++ Y ++ + NN + + Sbjct: 61 NQAQALYEETYYDEEDGEDLLNELRYTYSYTIHPDFTFTKFMEKINDNNFM--LEELAQG 118 Query: 111 AKAIFE-DFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + I DF + ++ + + + K +G+ + ++ + Sbjct: 119 FRDIERSHPDFENLFEDVDLMSRRLGPTPQKRNQTITAVMKELAGLNFAKNA---DLLGD 175 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE L+ +F SE + A +F TP+ V L T + + + T YDPT G Sbjct: 176 AYEFLLGQFASESGKKAGEFYTPQPVSELMTRIAIQGKEDKL------GLTAYDPTMGFR 229 Query: 218 GFLTDAMN 225 + N Sbjct: 230 VIIVIEAN 237 >gi|291566463|dbj|BAI88735.1| type I restriction enzyme, modification chain [Arthrospira platensis NIES-39] Length = 200 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 17/187 (9%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 ++K A+ L G+ + +D+ V L L+ + E + + E+Y +S Sbjct: 18 EAELFKAADKLRGNMEPSDYKHVALGLIFLKHICDRFETRQRELAEEY-----PEGVEDS 72 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTI 124 A F+ S + + + I + + K + + Sbjct: 73 DEYTAENVFWVPQAARWSHPQANAKQPTIGKLIDEAMLAIEKENSSLKGVLPKEYARPAL 132 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 A +L ++ S I L V+ +YE+ + +F + +F TPR V Sbjct: 133 ----NAVMLGELIDLISNIALGEAQDTARDVLGRVYEYFLGQFAGSEGKRGGEFYTPRSV 188 Query: 184 VHLATAL 190 V + + Sbjct: 189 VRVMVEM 195 >gi|315446768|ref|YP_004079647.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] gi|315265071|gb|ADU01813.1| type I restriction-modification system methyltransferase subunit [Mycobacterium sp. Spyr1] Length = 694 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 119/350 (34%), Gaps = 51/350 (14%) Query: 89 STLGSTNTRNNLESYIASFSDN-AKAIFED----FDFSSTIARLEK-----AGLLYKICK 138 L N IA+ S + + + ++ L+ G L + Sbjct: 104 KKLSLEAVDANWR-LIAAASPSQTADVLRRTATDAQWDDILSTLDDVERETNGRLDTLP- 161 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 + + D + ++ + ++RR E A + +V+ + LL + Sbjct: 162 -IAAVVSAVDGIEPDRLAIAADEVLRRGSGERGRAAGYGVGEHGIVNSRVSELLSNLASS 220 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 K +YDP CG L K G ++ + Sbjct: 221 TKG------LVYDPACGIAEALVRTRT---------KRAGGGRLVGHDINVRAIRIARMR 265 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + L+++ + L +D R ++ PPFG W + ++ Sbjct: 266 SFLHELDAEF--------ECADVLLEDPAPDLRADTVVAEPPFGMDWSRSQNIA------ 311 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 R+ G+P ++ + +L H L+ G A +V S++PL A + IR Sbjct: 312 --DPRWAFGIPPANNSELAWLQHAIAHLKPE----GSAYVVTSTAPL---TARGSSAAIR 362 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 LL + IEA++ LP + T I LW+L V LI+A+ Sbjct: 363 AELLRSGWIEAVILLPPKMLPHTTIPVALWVLRQADHPSNTVDVLLIDAS 412 >gi|307067538|ref|YP_003876504.1| type I restriction-modification system methyltransferase subunit [Streptococcus pneumoniae AP200] gi|306409075|gb|ADM84502.1| Type I restriction-modification system methyltransferase subunit [Streptococcus pneumoniae AP200] Length = 263 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 106/291 (36%), Gaps = 33/291 (11%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 HG + + + M++ +E + I +LS+D ++ L+NPPF Sbjct: 2 FHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF 54 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + + + + K +LFL L+ GGRAA+++ Sbjct: 55 KGSLDYNSTSNDL-----------LATVKTKKTELLFLSLFLRTLKP----GGRAAVIVP 99 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 LF + IR+ ++EN ++A++++P+ +F ++T + I + Sbjct: 100 DGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTD 156 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 KV + + + KR+ I+D+ I++ + E + D F + V Sbjct: 157 KVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQRTDQSFF----VPV 209 Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + L +E + + + + D+ K + + Sbjct: 210 AEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLAELEK 260 >gi|302543740|ref|ZP_07296082.1| N-6 DNA methylase superfamily protein [Streptomyces hygroscopicus ATCC 53653] gi|302461358|gb|EFL24451.1| N-6 DNA methylase superfamily protein [Streptomyces himastatinicus ATCC 53653] Length = 393 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 57/314 (18%), Positives = 116/314 (36%), Gaps = 43/314 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 + + +R ++ + + TP D+ L + P + DP CG+G Sbjct: 28 LLDQCLRELSADQA-DGSHYFTPDDMARLMVGAAV----------PRDGHRVLDPVCGSG 76 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 G L ++ +V + + P + G+E T V +R + + Sbjct: 77 GLLVESHRYVRE---RVGLNPAMSLQGKEQHAHTWQVARMNFAVRGITAHVFP------- 126 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGE----LGRFGPGLPKIS 332 G +L++ +R L+N PF + W + + ++ R+ P Sbjct: 127 PGDSLAEP--EPERHDIVLANLPFNQRDWAPEDKEEQAAGRSAPPLPVDPRWPEEPPSRG 184 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + ++ H+A+ L GR ++ S + + + R DL+E ++A Sbjct: 185 SANSAWIQHIAHALAPA----GRGVFLMGDSVANSRQPVTRRLRERLL--REDLVECVIA 238 Query: 393 LPTDLFFRTNIATYLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIIN 445 LP +F + + LW+L+ K+ +RR +V +NA + + +R + Sbjct: 239 LPLRVFGHSKASACLWVLNRDKSARPGWGVLDRRQQVLFVNARRAFEPVPKSRARR--LG 296 Query: 446 DDQRRQILDIYVSR 459 D IL + Sbjct: 297 DKNTALILTTLAAW 310 >gi|225573225|ref|ZP_03781980.1| hypothetical protein RUMHYD_01416 [Blautia hydrogenotrophica DSM 10507] gi|225039357|gb|EEG49603.1| hypothetical protein RUMHYD_01416 [Blautia hydrogenotrophica DSM 10507] Length = 769 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 103/320 (32%), Gaps = 61/320 (19%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + +YE IR + TPR + L+ Sbjct: 271 QTDTDFLGLLYEAFIRYGYD--NNSLGIVFTPRHITKYCAELIDVSAKD----------K 318 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLE 265 + D CG+GGFL A + + + IP +G + P A+ M R Sbjct: 319 VIDIACGSGGFLVAAFDRMLSSYTKMGIPFNVIRESLYGFDTNPTVWALAALNMFFRG-- 376 Query: 266 SDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 D +I+ S + RF L NPPF ++ E ++D + Sbjct: 377 -----DGKSHIENASCFEESSMNAVKDRFTKALLNPPFSQEEEPERDFIN---------- 421 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 +E G A +V S A + R L+ Sbjct: 422 --------------------TAMESLQALGVMAVVVKSGIF-----ADDDNALWRNDFLK 456 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 + +++LP+DLF+ T I T + + ++ + KV + A + KR Sbjct: 457 KHTLLGMISLPSDLFYPTAIDTTIMVAQAKRPQNLTDKVFM--AKIWNDGYKKLKGKRVE 514 Query: 444 INDDQRRQILDIYVSRENGK 463 + Q ++L+ + G+ Sbjct: 515 TSGSQLDEVLEEFRKFRAGE 534 >gi|329939285|ref|ZP_08288621.1| type I restriction modification system protein [Streptomyces griseoaurantiacus M045] gi|329301514|gb|EGG45408.1| type I restriction modification system protein [Streptomyces griseoaurantiacus M045] Length = 793 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 43/308 (13%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + + L+ +FGS + + +F TPR VV L L +D+ R +YDP Sbjct: 230 DEFRQLVDQFGSRAALPSGEFFTPRAVVRLMRDAALGDEDSA--------RRVYDPYARA 281 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-- 274 G L + L G+ + T + + + + + + Sbjct: 282 GEMLDGVAERL-------GGVVPLTLRGESPQRGTLRLAGMNLALHGIPVELEAGTAAPW 334 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 N + G R L+NPPF K + G + G P Sbjct: 335 NERA-------WPKGHRADLILTNPPFNAHGAVPKP------REGID--WPYGPPPSGSP 379 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + +L H+ L+ GRA +V+ S + E EIR L+E+ +E IVALP Sbjct: 380 AFAWLQHVLVSLKDE----GRAGVVMPVSAGTSTDVR--EREIRSRLVEDGAVECIVALP 433 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 LF ++ LW L + + R ++ ++A DL R+++D+ + Sbjct: 434 PQLFSGAQVSVCLWFLRS--SAAVREEILFVDARDLGDKATRGP---RVLSDEHVGAVTR 488 Query: 455 IYVSRENG 462 + G Sbjct: 489 TVQAWRRG 496 >gi|312899539|ref|ZP_07758868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470] gi|311293312|gb|EFQ71868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470] Length = 310 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 115/310 (37%), Gaps = 49/310 (15%) Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------------- 284 P + +E + + IR + + + G +LS+ Sbjct: 1 PDAQFYCEEFSDRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTE 52 Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 D + + NPP+ W K+ +E+E + L S Sbjct: 53 FSSIEIVDEVPATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYA 107 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 FL+ ++L+ G +I+L LF G A E +IR+ L+E +L++A++ LP Sbjct: 108 FLLQGIHQLKE----NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKA 160 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F T+I T L +L + + + I+A+ + + ++ D+ +IL+++ Sbjct: 161 FMNTDIPTVLLVLKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQ 213 Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 +R+ KFS ++ + P R + + L + K + + Sbjct: 214 ARKAVDKFSSVVTIEELKENDFNLNIP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNN 272 Query: 517 DILKPMMQQI 526 L MM + Sbjct: 273 IELAKMMNDL 282 >gi|282882715|ref|ZP_06291322.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis 315-B] gi|281297376|gb|EFA89865.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis 315-B] Length = 269 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 38/243 (15%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51 + + L IW A+D+ G DF + +L R + + Sbjct: 3 NNESIQRSELYRKIWAIADDVRGAVDGWDFKQYVLGILFYRFISENIREYFNHAEHEAGD 62 Query: 52 ------RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101 + + +E F ++ + F + F N + + L + N +E Sbjct: 63 LEFDYGKISDQEANEDFRPGTVEDKGFFILPSQLFENIVKTARTNENLNTDLANIFKEIE 122 Query: 102 SYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153 + F+ D+ K +F+D D +S +RL EK L I + I D Sbjct: 123 ASAVGFASEDDIKGLFDDIDMTS--SRLGGSVSEKNKRLADIIEGIGQINFKDFRNNDID 180 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + Y +LI ++ + + +F TP+ V L L++D I +YDPT Sbjct: 181 TFGDAYLYLISKYATNAGKSGGEFFTPQTVSKLLARLVMDGK--------NKINKVYDPT 232 Query: 214 CGT 216 CG Sbjct: 233 CGF 235 >gi|70730332|ref|YP_260071.1| type I restriction-modification system, M subunit [Pseudomonas fluorescens Pf-5] gi|68344631|gb|AAY92237.1| type I restriction-modification system, M subunit [Pseudomonas fluorescens Pf-5] Length = 580 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 81/551 (14%), Positives = 173/551 (31%), Gaps = 74/551 (13%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGSTN 95 L+RL+ + + E +SF+ T + Sbjct: 36 LIFLKRLDDIASADDEEGL---PSVFQVLMPDEVHPPNKHHSFWKNLLMHRDPGTYLNDQ 92 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIA----RLE--KAGLLYKICKNFSGIELHP-- 147 L S + + N ++ + + ++ +L+ K+ L + + +P Sbjct: 93 IFPWLRS-LEMRTGNYPSLVKRLGLNGMLSDAYFQLDPSKSQALTGLVHAIDELFPYPGQ 151 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++E+L + + + +T R + ALL +P + Sbjct: 152 KRQEGFSPGEVFEYLFTQGSTSSNI--GPLVTARHITRFMVALL----------APLPGQ 199 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP GTGGF+ A ++ + +I G +L + +L+ Sbjct: 200 RIIDPAAGTGGFMVSAQQYMLSRHARLSAATKKQIHNGHSLVGIDLSHTLARIGWVNLLL 259 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 +ES + + S + + + + + LS+ PFG + + + A Sbjct: 260 HDIESPQCMQGNSLVTGDSQGAAGRWLKESYDFVLSDLPFGGRIDPQEAAGANY--LPFY 317 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 R G + +LF+ N L GG AA+++ + L + ++RR L Sbjct: 318 ARDDQG-NRSDKVELLFVWRALNLL----QVGGSAALIIPQNLLV--GRSQAQIDLRREL 370 Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSN----------RKTEERRGKVQLINATD 429 L +EA++ LP +F + T I + ++ + V T Sbjct: 371 LSRHSVEAVILLPGAIFNPY-TGIKAAILVVRKVTDHQALASPHVAPPQTDAVWFYEVTQ 429 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 S+ + KR+ + D + D +V + S L R + F Sbjct: 430 DGHSMDH---KRKELPADADNDLFDAFVHFRRRQLSAEL-----------WERGRDLYFQ 475 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 W L + + + + ++ +E+ +S+ + + Sbjct: 476 AGAE------EGPYWTSLHNVIERGSTQVKQWLVPVRRKLRGSEALFPDSLDPDCIEAKD 529 Query: 550 VKASKSFIVAF 560 Sbjct: 530 WSLDIDDYKVI 540 >gi|291563845|emb|CBL42661.1| Type I restriction-modification system methyltransferase subunit [butyrate-producing bacterium SS3/4] Length = 676 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 70/404 (17%), Positives = 130/404 (32%), Gaps = 67/404 (16%) Query: 54 AVREKYLAFGGSNIDL--ESFVKVAGYSFYNTSEY------SLSTLGSTNTRNNLESYIA 105 Y + + L + F+ + + L + L++ Sbjct: 226 EYLRTYGSLKDQDKPLVVSGILLALDDKFFKPDDLLGDETTTDGQLIYDAIQRRLKASNV 285 Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + +F T ARL + L K F L + + + E I Sbjct: 286 GPDAKRDKLMSEFSIIRTSARLNEVDAKLGKTPLKFYTEFLKKNVFDNIKYRSSSEDFIG 345 Query: 165 RFGSEV-------SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 RF E + +TPR + L LL + + DP CGT Sbjct: 346 RFYGEFMSYSGGDGQTLGIVLTPRHICDLFCDLL----------NVQPSDIVLDPCCGTA 395 Query: 218 GFLTDAMNHVADCGSHHKIPPIL----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 GFL AM+H+ + ++ HG EL+ A+ M++R D + Sbjct: 396 GFLVAAMHHMLEKAGTDQVKRKNIKKKQLHGFELQSNMFAIAATNMILR-------DDGN 448 Query: 274 KNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 NI+ L ++ K + NPP+ + + D Sbjct: 449 SNIKCEDFLRQNPAQVQLKGATVGMMNPPYSQGTKADP---------------------- 486 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S + F+ HL + L G RAA+++ S + E + +L++ +E ++ Sbjct: 487 SQYELSFVEHLLDSL----TEGARAAVIVPQSSM--TGKTKDEQTFKENILKHHTLEGVI 540 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 TD F+ + + + + + I+ + +R Sbjct: 541 TCNTDTFYGVGTNPVIAVFTAHEPHPDDKTCKFIDFRNDGYEVR 584 >gi|218960818|ref|YP_001740593.1| Restriction modification system DNA specificity domain:N-6 DNA methylase:Type I restriction-modification system, M subunit [Candidatus Cloacamonas acidaminovorans] gi|167729475|emb|CAO80386.1| Restriction modification system DNA specificity domain:N-6 DNA methylase:Type I restriction-modification system, M subunit [Candidatus Cloacamonas acidaminovorans] Length = 837 Score = 123 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 69/450 (15%), Positives = 141/450 (31%), Gaps = 88/450 (19%) Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 Y + + Y + ++Y+ + L E + + D I + Sbjct: 37 YKFMYDMDNESIELGGKPKYFTGDYAKYAWNRLFDQKLSG--EGRVMLYQDALTKIPNNA 94 Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + K L + K F + + +E+L+ GS+ A Sbjct: 95 SIPTLFRDIFKNAFLPYRDPETLKLFLKCIDEFTYEHSEKLGDAFEYLLAVLGSQG--DA 152 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231 F TPR ++ L+ P ++ DP CGT GFL A H+ Sbjct: 153 GQFRTPRHIIDFMVELI----------DPQKEDSILDPACGTAGFLISAYKHIIKTNSSN 202 Query: 232 ----------------------------------SHHKIPPILVPHGQELEPETHAVCVA 257 + G ++ E + + Sbjct: 203 YDKVNDPHTFAMHNTPLDELVIQNGKKYTGDLLTPDQRAFLHKNIKGYDIAFEMVRLSLV 262 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M + + I + TL+ + + L+NPPF K + HK Sbjct: 263 NMYLHGFN-------TPQIFEYDTLTSTERWNEYANVILANPPFMTP----KGGIRPHHK 311 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 F + +LF+ ++ L GRA I++ +F + ++ Sbjct: 312 ------FTIQAKRS---EVLFVDYMLEHL----TNNGRAGIIVPEGIIFQSG--NAYKQL 356 Query: 378 RRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 R+ L+E + + +++LP +F + + T + + ++ K+ + + Sbjct: 357 RKLLVEENYLVGVISLPAGVFNPYS-GVKTSILWIDKA-LAKKTDKIIFLKINNDG---F 411 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFS 465 + G +RR I + D ++ + S Sbjct: 412 DLGAQRRPIEANDLPAAFDNAMAYKESVLS 441 >gi|300215354|gb|ADJ79767.1| Modification subunit [Lactobacillus salivarius CECT 5713] Length = 463 Score = 123 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 79/421 (18%), Positives = 146/421 (34%), Gaps = 56/421 (13%) Query: 117 DFDFSSTIARL----EKAGLLYKICKNFSGIELHPDTVPDRVMSNI-----YEHLIRRFG 167 F++ + L EK L I ++ SG + + +E + Sbjct: 83 KFEYVELVKSLYNIEEKNPKLKNIFQDVSGSTSSLPSETAFEKIDSRNEVSFEENLEIIK 142 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 T +++ L T L+ + + ++YDP GT L Sbjct: 143 RSSGARDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPALGTASLL------- 186 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G + +GQE+ + + + ++ ++ D ++N TL+ + Sbjct: 187 --LGINRDALKENKYYGQEINTQVIKIAIMNAIVNDVDDDKFEFKNEN-----TLANNW- 238 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + +S+PP KW D++ + +P + F++ +KL Sbjct: 239 EFGKVDIVVSDPPINMKWNVDRNLSQDRRYRDYGE-----MP--NKADWGFILDGIDKL- 290 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 + G + + LF G E IRR LLE+ I A++ LP + T IAT L Sbjct: 291 ---SDNGMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLPGNTKISTTIATCL 344 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466 +L ++ V INA+ + E I+ + +I+DI+ ++ K FS Sbjct: 345 LVLRKSSEDK---DVFFINASQEYEKKGLE----NILTEANVDKIVDIFNEKKEEKGFSH 397 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 + Y + ++ K L E KL LK +M + Sbjct: 398 VASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQT-DATLKNLMGDL 456 Query: 527 Y 527 Sbjct: 457 G 457 >gi|146318349|ref|YP_001198061.1| HsdM [Streptococcus suis 05ZYH33] gi|146320544|ref|YP_001200255.1| HsdM [Streptococcus suis 98HAH33] gi|145689155|gb|ABP89661.1| putative HsdM [Streptococcus suis 05ZYH33] gi|145691350|gb|ABP91855.1| putative HsdM [Streptococcus suis 98HAH33] Length = 299 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 21/211 (9%) Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 + NI QG+T+ + ++ Y +SNPPF + + +D V E RF G+P Sbjct: 39 QHSIHNIVQGNTILNNRHV-EKMDYIVSNPPFKLDFSEWRDQV--ESLPNSSERFFAGVP 95 Query: 330 KISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 KI + LF+ H+ + L+ G+AAIVL + F + +IR+ L+ Sbjct: 96 KIPNKKKESMAIYQLFIQHIIHSLKED----GQAAIVLPTG--FITAQSGIDKKIRQHLV 149 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + ++ +V++P+++F T + + + + V LI+A++L T ++ ++ Sbjct: 150 DEKMLAGVVSMPSNIFATTGTNVSILFIDKK----NKDDVVLIDASNLGTKVKEGKNQKT 205 Query: 443 IINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 +++ D+ QI+ ++++E + FS + Y Sbjct: 206 VLSPDEESQIIQTFINKEVVEDFSVKVSYEE 236 >gi|170718360|ref|YP_001783586.1| N-6 DNA methylase [Haemophilus somnus 2336] gi|168826489|gb|ACA31860.1| N-6 DNA methylase [Haemophilus somnus 2336] Length = 461 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 69/427 (16%), Positives = 134/427 (31%), Gaps = 73/427 (17%) Query: 161 HLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 ++ F ++ TP + L + L + ++ D GTG Sbjct: 47 CFLQEFQENFADRKSLKQDFTPSAICQLVSRL------------TPEVDSVLDVCAGTGA 94 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 K+ P + QE E A + + +R + ++ + ++ Sbjct: 95 LTIA----------KWKVNPNATFYCQEYSKEAIAFLLFNLCVRGITAEVKHC---DVLT 141 Query: 279 GSTLSKDL----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 G T ++ + G + +SNPP+ KW Sbjct: 142 GETFAEYRLTRNGQYSDIENTKLDWRGLKVDCVVSNPPYSAKWNPVS-----------DE 190 Query: 323 RFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 RF GL + F++H + L+ G A +L LF G E +IR+ L Sbjct: 191 RFEYFGLAPKNAADYAFVLHGLHHLKEE----GTAHFILPHGVLFRGN---SEGKIRQKL 243 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 +E +++ LP +LF I T + + + +I+A DL+ ++ Sbjct: 244 IEQGYFSSVIGLPDNLFISAKIPTAILTFKKQ-----SSDIYVIDAADLFEKAKS----N 294 Query: 442 RIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 I+ + Q+L Y R N K + + +Y + P + + L+ Sbjct: 295 NIMRPEHVNQVLTAYQLRHNIDKLAHLANYTEIQQNDFNLNIPRYVDKSEPDPEIDLLKE 354 Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560 L+ + + + + +G AE + + A Sbjct: 355 AQELLDLTNDIEKSGQAFVAMLAELEMTHGSAEDKAEFEQVKQILAQV-FAPRTKEKKAI 413 Query: 561 INAFGRK 567 K Sbjct: 414 QQLISSK 420 >gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01] gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01] Length = 842 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 82/480 (17%), Positives = 159/480 (33%), Gaps = 79/480 (16%) Query: 1 MTEFTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M+ S N IWK + + G +D+ + +R ++ R Sbjct: 1 MSTNNSSHRDARNQARDIWKLIDYIRGASSISDYRSLAYSLLFIRYMQAK-TGERFEYSN 59 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 Y + SN + ++ + L + + N + D Sbjct: 60 FYSSEDISNFIDNLVQRCIDSEMFHHDVAGFLR---EHISYVLLKHGSINEPNVRLALSD 116 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 +F ++ +A L S +++ F S+ +F Sbjct: 117 -NFKNSSRSFVEATL--------SELDIL-------------------FAENESKSGGEF 148 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP+DV L T L + ++ DP G G A + + G++ I Sbjct: 149 YTPQDVNWLVTRL----------GAEYEPDSVCDPFAGAGST---AFSFDSALGTYFNID 195 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 V + + D+ G +LS + +++ S Sbjct: 196 TQEVNRDAHFQIVVSRIVK--------------DVYGKDYLGDSLSTPYYQSQQYDLVAS 241 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRA 356 PPFG K K E + LP+ SD + + N G+ Sbjct: 242 FPPFGMKIPKSNRRQILERRGNYWLEQAYNLPESRSDW------FVTLSMLPALNKKGKL 295 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +S + + A E++IR +L+ IE ++ LP +++ T+I++ L +L+N+ Sbjct: 296 ITGMSLASMTRSGA---ETKIRSFLVAQGNIEKVILLPKNIYHSTSISSVLLVLNNKSDG 352 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---RENGKFSRMLDYRTF 473 E+R +Q ++A+ + R R ++ D +I+ +S S + F Sbjct: 353 EKRRDIQFVDASLFYQPARG----RNTLSFDNIEKIVASCLSDGRFSKTISSEDVANNNF 408 >gi|225573238|ref|ZP_03781993.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM 10507] gi|225039370|gb|EEG49616.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM 10507] Length = 927 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 86/428 (20%), Positives = 141/428 (32%), Gaps = 73/428 (17%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI--ARLE-KAGLLYKICKNFS 141 + L S + + + I + D D+ LE + I Sbjct: 279 RATPVELKSDSGKAEIRRRIDGLYA---KLLSDPDYGEMFKDETLEYDNESIAYIVSILQ 335 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 G+ L + + + YE L+ S + + F TPR++V A ++ Sbjct: 336 GLSLTDEETNTDALGDAYEVLL---PSTLKGESGQFFTPREIVRFAIEVIAP-------- 384 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------------PHGQE 246 + + D CG+ GFL+ A+ ++ + G + Sbjct: 385 NYSKKEYILDTACGSAGFLSVALENIRKQINTLYANRGFSKEKKRGMLKDYAGKYVFGCD 444 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-----SKDLF----TGKRFHYCLS 297 ++P + + + M I + NI +L F T + Sbjct: 445 IDPLLYRISKSYMAIMG-------EGKGNIYNLDSLDLTNRLDPNFRRSVTEGSVDIITT 497 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNG-- 352 NPPFG + + + V + + G G ++ +G LFL + L+ N Sbjct: 498 NPPFGTQIKDTRRDVLRTYDLGHKIINGEPTNEVLEGQDPDKLFLERDISYLKEATNDAD 557 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILS 411 GGR IVL L A E R+WLL+ I AIV LP + F T T L L Sbjct: 558 GGRMVIVLPKQNL--SGAKEESVEFRKWLLKRVQITAIVDLPREAFQPHTGTKTSLVFLK 615 Query: 412 NRKTEERRGKVQL---------------INATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + + + T +RN+ +R I ND +ILD Y Sbjct: 616 KVRNIPDNYPIFMAVSEAVGHDRRGLPLYKKDSNGTDLRNDKNERVIWND--LPEILDRY 673 Query: 457 VSRENGKF 464 F Sbjct: 674 KEYTEKGF 681 >gi|163801595|ref|ZP_02195493.1| type I restriction-modification system methyltransferase subunit [Vibrio sp. AND4] gi|159174512|gb|EDP59314.1| type I restriction-modification system methyltransferase subunit [Vibrio sp. AND4] Length = 639 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 83/420 (19%), Positives = 153/420 (36%), Gaps = 71/420 (16%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + IFE F R+ +LY + I+L D D + ++I+ GS Sbjct: 106 KKIENIFEQIPF-----RIRSNKILYLVIHKLEEIDLFEDIEVDFD--YLLLNMIKDSGS 158 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + +PR ++ + L +P + T+YDP GTGGF +A+ HV Sbjct: 159 S-----GAYYSPRPLIKAMVSAL----------NPEPLTTVYDPAMGTGGFFVEAIKHVK 203 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + L G +L P H + + +L+ ++ +L Sbjct: 204 ----NKSYFNDLNFIGNDLSPFAHLIGMLNLLLNDIDISGVSIS-------DSLLN--RD 250 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +++ + +S PFG + ++ + + +G G +FL H +KL Sbjct: 251 CQQYDFVISGVPFG---KVNELTKYEYYYHGYSGSLEA----------MFLKHTMDKLAK 297 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GGRAAIV+ LF + E ++R LL + +++LP + + + Sbjct: 298 ----GGRAAIVIPDGILFGNASHLDE--LKRQLLTQFNLHTVLSLPKGTLAPYSGVKVSV 351 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 N +E+ + K I D +Y RE + S + Sbjct: 352 LFFDNTVSEK---DIWFYELR-----TDKPLSKLNSITDSDFEDFTSLYERREVSEHSCL 403 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 + + + L +SF L A L+ D +K+ L +S L ++ + + Sbjct: 404 ISKESLLQDK-----TLNLSFSL-PKKEAGLKFDK--QKMIALLKSEQLALVTSIEKHFD 455 >gi|227892124|ref|ZP_04009929.1| type I site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus salivarius ATCC 11741] gi|227866056|gb|EEJ73477.1| type I site-specific deoxyribonuclease methyltransferase subunit [Lactobacillus salivarius ATCC 11741] Length = 463 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 91/500 (18%), Positives = 164/500 (32%), Gaps = 77/500 (15%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG-----YSFYNTSEYSLSTLGST 94 +LR+ + + + V++KY + D + + Y Y +++ L + Sbjct: 35 VLRKFDK--DGSILEVQKKYEEGKETVQDAQFVIAPQDTYYHHYQMYKANKFEYVELVKS 92 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 I + K IF+ D + + L F I+ + Sbjct: 93 LYN------IEEKNPKLKNIFQ--DVRGSTSSLPSET-------AFEKIDSRNEVS---- 133 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +E + T +++ L T L+ + + ++YDP Sbjct: 134 ----FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPAL 180 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GT L +GQE+ + + + +I + D + Sbjct: 181 GTASLLLGINRAALKENK---------YYGQEINTQVIKIAIMNAIINDVADDKFEFKNA 231 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 N TL+ + + +S+PP KW DK+ + + LP + Sbjct: 232 N-----TLANNW-EFGKADIVVSDPPMSMKWNIDKNLSQDKRYQDYGD-----LP--NRA 278 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++ NKL G + + LF G E IRR LLE+ I A++ LP Sbjct: 279 DWGFILDGINKLSDD----GMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLP 331 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + T IAT L +L ++ V INA+ + E I+ + +I+D Sbjct: 332 GNTKISTTIATCLLVLRKSSEDK---DVFFINASQEYEKKGLE----NILTEANIDKIVD 384 Query: 455 IYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 I+ ++ K FS + Y + ++ K L E KL Sbjct: 385 IFNEKKEEKGFSHVASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQ 444 Query: 514 FWLDILKPMMQQIYPYGWAE 533 LK +M + Sbjct: 445 T-DATLKNLMGGLGLMEIDN 463 >gi|46487195|gb|AAS98975.1| Tgh014 [Campylobacter jejuni] Length = 154 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 51/203 (25%) Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 FGY +I + +P + + D A+L+ + L+ L+ + Q + Sbjct: 1 EDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKILEKLQELEQNPQDFK 49 Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE- 589 E F+ K L VK KS I D++ T Sbjct: 50 NREEFI---------KFLGVKLKKSEENLII----------------------DSDKTNN 78 Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649 E +P +IQ Y+ EV P+V +++I E VGYEI F+++FY Y P RK Sbjct: 79 TEKIPLKTNIQGYYDTEVKPYVANSWIA--------WESASVGYEILFSKYFYTYTPPRK 130 Query: 650 LQDIDAELKGVEAQIATLLEEMA 672 L++I+ EL+ +E ++ LL E+ Sbjct: 131 LEEINNELEKLEKEVQDLLREIV 153 >gi|296258260|gb|ADH04257.1| putative HsdM-type I modification subunit [Lactobacillus delbrueckii subsp. lactis] Length = 165 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 22/183 (12%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + K +EL P + + YE+LI +F S+ + A +F TP++V L L L Sbjct: 3 VIKAIGKLELV--KTPGDTLGDAYEYLISQFASKSGKKAGEFYTPQEVSELLARLTLVGK 60 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 D ++YDP G+G L + +V + + +GQE+ T + Sbjct: 61 D------YSSGMSVYDPAMGSGSLLLNFRKYVPNSS-------RITYYGQEINTSTFNLA 107 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVE 313 M++ ++ ++ ++ G TL +D + F + NPP+ KW DK ++ Sbjct: 108 RMNMILHHVDL-----ANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD 162 Query: 314 KEH 316 Sbjct: 163 DPR 165 >gi|256375106|ref|YP_003098766.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827] gi|255919409|gb|ACU34920.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827] Length = 677 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 97/274 (35%), Gaps = 48/274 (17%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E L RF +TPR++ L L T++DP CGTG Sbjct: 123 AFEQLHDRFVEAN--WRGVAVTPRELARLMVDL------------TEPHGTVFDPACGTG 168 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A+ + P + P GQEL+P V +A + +++ Sbjct: 169 ALLRAAV----------RSEPGIRPVGQELDPSLAQVAIARLA--------FAAGEASVR 210 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L D F +SNPPF + + + R+ G+P + + Sbjct: 211 SGDSLRNDAFPELVADVVVSNPPFNIRNWGAE-------ELAYDRRWVYGVPPKGESELA 263 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H L GG A +++ + IR LL + + A+VALP Sbjct: 264 WVQHCLAHLRP----GGHAVVLMPPAVASRRSGRP----IRAELLRSGTLRAVVALPPGA 315 Query: 398 FFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430 ++ +W+L + R V I+ Sbjct: 316 AAPLHVGLQIWVLRRPEPGGADRRTVLFIDTAGE 349 >gi|163796256|ref|ZP_02190217.1| N-6 DNA methylase [alpha proteobacterium BAL199] gi|159178398|gb|EDP62940.1| N-6 DNA methylase [alpha proteobacterium BAL199] Length = 807 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 117/359 (32%), Gaps = 69/359 (19%) Query: 92 GSTNTRNNLESYIASFSDNA-KAIFED-FDFSSTIARLE-KAGLLYKICKNFSGIELHPD 148 N ++ NA KA+ +L KA + I + + L + Sbjct: 219 DPRNILGDINQACEKAFWNAGKAVLAKSLHVDEANDKLAVKARRIISILERLNVSVLTAE 278 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + +YE F + TPR + LL D + Sbjct: 279 H---DYLGQLYETF---FRYAGGNTIGQYFTPRHIASFGADLLGVSIDDV---------- 322 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHK----IPPILVPHGQELEPETHAVCVAGMLIRRL 264 + DPTCGTGGFL AM VA + G + EP T A+CVA M++R Sbjct: 323 VLDPTCGTGGFLIAAMERVAREHQISRSEMVKLVSTRLIGFDDEPITAALCVANMILRG- 381 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 D S ++ +G + + L NPP+ K Sbjct: 382 ------DGSSSVHRGDAFTAPEYPIGTASVVLMNPPYPHKQTDTPTE------------- 422 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 F+ L + G R A V+ S L S R+ +L+N Sbjct: 423 ------------AFVERALEGL----SQGSRLAAVIPLSLLVKSNKAS----WRKAILKN 462 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 + +EA + LP +LF + + + +GK + I N+G + R Sbjct: 463 NTLEAAIKLPDELFQPYAQPYTVIVYLRKGIPHPKGK------RAFFARIENDGFRIRK 515 >gi|295111478|emb|CBL28228.1| Type I restriction-modification system methyltransferase subunit [Synergistetes bacterium SGP1] Length = 825 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 82/438 (18%), Positives = 146/438 (33%), Gaps = 74/438 (16%) Query: 54 AVREKYLAFGGSNIDLE-----SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA--- 105 Y + L + + + + S + + + L I Sbjct: 186 EYLRTYGTLKDQDKPLVVAGILLALDEVKHEEFKIDNLTGSQVDKNHDGDKLMKAINTRL 245 Query: 106 -----SFSDNAKAIFEDFDFSSTIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + +F +T RL + +L K F L+ + Sbjct: 246 TRSNVGPDAKKDKLLSEFSILNTSFRLNEVNDVLGKTPLKFYTKFLYDRVFRNIKYQKTS 305 Query: 160 EHLIRRFGSEV-------SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 E I RF E + +TPR + L L+ + + + DP Sbjct: 306 EDFIGRFYGEFMSYSGGDGQTLGIILTPRHITDLMCDLVDVQVNDV----------VLDP 355 Query: 213 TCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 TCGT GFL AM+ + D + K HG EL+ AV A M++R Sbjct: 356 TCGTAGFLISAMHKMLSMSDSDAQRKDIKKKQLHGFELQSNMFAVAAANMILR------- 408 Query: 270 RDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 D + N++ L K+ K L NPP+ + + D Sbjct: 409 HDGNSNLECTDFLKKNPAQVQMKGATIGLMNPPYSQGTKADP------------------ 450 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S + F+ HL + L GGRAA+++ S + A E + +L+N + Sbjct: 451 ----SQYELSFVEHLLDSL----TEGGRAAVIVPQSSMTGKSAE--EKVFKESILKNHTL 500 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ-LIN-ATDLWTSIRNEGKKRRIIN 445 E ++ T+ F+ + + + + KV I+ D + + + G Sbjct: 501 EGVITCNTETFYGVGTNPVIALFTAHEP-HPEDKVCKFIDFRNDGFETRAHVGLVEGDSA 559 Query: 446 DDQRRQILDIYVSRENGK 463 D+++ +LD++ R Sbjct: 560 KDKKQHLLDVWNGRIEAP 577 >gi|257795446|ref|ZP_05644425.1| type I restriction-modification system [Staphylococcus aureus A9781] gi|257789418|gb|EEV27758.1| type I restriction-modification system [Staphylococcus aureus A9781] Length = 199 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 16/206 (7%) Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DL 386 L S F+ H+ + L+ G A+VL LF G A E IRR+L+E + Sbjct: 7 LAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNY 59 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 +EA++ LP ++F+ T+I T + + +K ++ V I+A++ + GK + ++D Sbjct: 60 LEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSD 113 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 Q +I+D Y +E K+S + + P R ++ L+ Sbjct: 114 AQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDL 172 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGW 531 K + + ++++ Sbjct: 173 KNIDKEIAEIEQEINAYLKELGVLKD 198 >gi|317048486|ref|YP_004116134.1| N-6 DNA methylase [Pantoea sp. At-9b] gi|316950103|gb|ADU69578.1| N-6 DNA methylase [Pantoea sp. At-9b] Length = 632 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 81/447 (18%), Positives = 155/447 (34%), Gaps = 84/447 (18%) Query: 43 RLECALEPTRS--AVREKYLAFGGSNIDL---ESFVKVAGYSFYNT-SEYSLSTLGSTNT 96 RL + ++ Y S L + ++ +F S Y+ L Sbjct: 174 RLSDLMSFSKELHNYMRDYAKLSESEKPLLVSGVLIALSNIAFSKVFSIYTPDEL-PEKL 232 Query: 97 RNNLESYIASFS---DNAKAIFEDFDFSSTIARLEKAGLL------YKICKNFSGIELHP 147 + +E I + + + + F L +A L Y + + Sbjct: 233 CDAIEEEIKKSDIPHAKKQNMIQPYSFLRVHPELSRADKLTGESPLYNLIDKINTHAWPF 292 Query: 148 DT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 + ++ Y +R G + + +TPR + L + + D+ Sbjct: 293 ISVYHDYDIIGQFYGEFLRYTGGD-KKALGIVLTPRHITDLFSRIANVQKDS-------- 343 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG---QELEPETHAVCVAGMLIR 262 T++DP CGTGGFL AM+ + + +G E +P +A+ + M++R Sbjct: 344 --TVFDPCCGTGGFLVSAMHQMFKKCITEDEKARVKQYGLIGVEQQPNMYALAASNMILR 401 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 D N+ QGS + ++ + NPP+ +K + Sbjct: 402 G-------DGKANLHQGSCFDDAITKEINSRQPDIGMINPPYAQKGKGLH---------- 444 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + F+ H+ + L + GG AIV S + E + Sbjct: 445 ---------------ELAFVEHMLDCLRV---GGIGIAIVPMSCVI-------TPHETKH 479 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTSIRNE 437 LL +EA++++P +LF T + + + K E G K D + + + Sbjct: 480 TLLSKHCLEAVMSMPDELFTPVGTITCIMVFTAHKPHEAEGRKTWFGYWKDDGFEKTKQQ 539 Query: 438 GKKRRIIN---DDQRRQILDIYVSREN 461 G R ++ ++ R + L Y +RE+ Sbjct: 540 G--RTDVSGRWENIRDKWLHSYKNRED 564 >gi|311900119|dbj|BAJ32527.1| putative DNA methyltransferase [Kitasatospora setae KM-6054] Length = 479 Score = 120 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 103/304 (33%), Gaps = 37/304 (12%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 F ++ +L ++ + L+ R + D+ Sbjct: 102 FVDAHQSIDDPVVLRELIAVLDEGLARDAGSVSADDEGEVLSDLLERALQHLRGSDPDYY 161 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP- 237 TPR +V L A + PG T+ DP C G FL A ++ + + Sbjct: 162 TPRALVDLVVATV----------RPGPDDTITDPACKAGSFLIAAHRYIREHDPGTEPRS 211 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G E + A +L+ + + S + G ++ Sbjct: 212 AGGRIRGNE--SALIGLAGANLLLHGI---TEHADCPGVTNESPFALPPMPGAT--VVIA 264 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPFG +K VE + S ++ +L H+ + L GGRA Sbjct: 265 NPPFGTMKGGEKSVVESRADLPV---------RTSSKALDYLQHIMSVLLP----GGRAG 311 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTE 416 +++ S LF A ++RR LL+ + ++ LP F + T + + + Sbjct: 312 VIVPDSVLF---ATGAARDVRRLLLQTFDVHTLIRLPAGAFPTARGVRTSILLFDRQ-PT 367 Query: 417 ERRG 420 ERRG Sbjct: 368 ERRG 371 >gi|291539611|emb|CBL12722.1| Type I restriction-modification system methyltransferase subunit [Roseburia intestinalis XB6B4] Length = 200 Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 71/200 (35%), Gaps = 16/200 (8%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + IW A LWG +++ VI+ LR + A + + + Sbjct: 1 MAEKNTANIGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLRYISTAFDKKYQQLLSE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113 G + + + F+ E + + + +N I + + K Sbjct: 59 ---GDGFEDDPDAYLEDNVFFVPVEARWDKIAAAAHKPEIGTTIDNAMRAIEADNKKLKN 115 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + S + + +L + F+ +++ V+ YE+ I +F + +G Sbjct: 116 VLPKNYASPDLDK----RVLGDVVDLFTNMDMGETEGNRDVLGRTYEYYIAQFAEKEGKG 171 Query: 174 AEDFMTPRDVVHLATALLLD 193 +F TP +V+ ++L Sbjct: 172 GGEFYTPSSIVNTLASILKP 191 >gi|290509518|ref|ZP_06548889.1| N-6 DNA methylase [Klebsiella sp. 1_1_55] gi|289778912|gb|EFD86909.1| N-6 DNA methylase [Klebsiella sp. 1_1_55] Length = 1304 Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 96/555 (17%), Positives = 188/555 (33%), Gaps = 84/555 (15%) Query: 32 GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLST 90 F LLR ++ + AV + + F N +L+ Sbjct: 15 RDFFSAFLLLRWID-IHDAEGEAV-ALFEEKDYHPLLPSYL------RFQNWPHPITLTD 66 Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L T ++L +Y+A + + + +L + L + + I + + Sbjct: 67 L--TAFVSSLVAYLARHDRQEIPVLNA--LNEIVQKLHETH-LAQFTATVNWIASYARGM 121 Query: 151 PD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 PD +++S ++E ++ A F P +L T ++ SP Sbjct: 122 PDERQMLSTMFETVL---NETEDMRAGYFTAPDVTTYLVTEIM----------SPEAGEK 168 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESD 267 +YDP G+GGFL A V I G E A + + + + Sbjct: 169 VYDPCSGSGGFLLSAFEKVRRSRPDTGISDGGTSFIGCE--------ARADVFLYGI-TR 219 Query: 268 PRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + NI + L + ++ ++ P G K+ + + + Sbjct: 220 LILAGATNIHLMTKLPSEGTHTSRDKYDVVMTTPVTGAKYISSEASKNEFLFPDTD---- 275 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 S G F+ H+ + L+ GRAAIV+ LF G A E+R++LL+ Sbjct: 276 ------STGQ--FIQHVFSSLKTE----GRAAIVVPDGFLFRGGAD---RELRQYLLKEG 320 Query: 386 LIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 +EA+VALP LF + + L IL + +R +++++A+ L+ R+ G K I Sbjct: 321 AVEAVVALPAGTLFRHSTLRGNLLILRKNR-VKRTESIRMVDASLLFE--RSPGSKTLSI 377 Query: 445 NDDQRRQIL---------DIYVSRENGKFS---------RMLDYRTFGYRRIKVLRPLRM 486 ++ Y ++G +S R+ + V Sbjct: 378 TQANTDILVNASTDRDVRRTYDIIQDGTYSFFDISSPSERIFSNLEDFAWDVTVDELSLT 437 Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 + L R + ++ L ++ + L + + + + +S + Sbjct: 438 GWDLTPRR--RNDKELYQFFNDTLDETSKIASLVSISEVFPGRVHKSTELFDSPLNKTDA 495 Query: 547 TLKVKASKSFIVAFI 561 ++ F Sbjct: 496 VGYIRIKNLFQGKIT 510 >gi|90962730|ref|YP_536645.1| modification subunit [Lactobacillus salivarius UCC118] gi|90821924|gb|ABE00562.1| Modification subunit [Lactobacillus salivarius UCC118] Length = 465 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 68/377 (18%), Positives = 131/377 (34%), Gaps = 47/377 (12%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E + T +++ L T L+ + + ++YDP GT Sbjct: 134 FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPALGTAS 184 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L G + +GQ++ + + +++ ++ D ++N Sbjct: 185 LL---------LGINQAALKENRYYGQDISTQAIKTAIMNVIVNDVDDDKFEFKNEN--- 232 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 TL+ + + +S+PP KW D++ + +P + F Sbjct: 233 --TLANNW-EFGKVDIVVSDPPINMKWNVDRNLSQDRRYRDYGE-----MP--NKADWGF 282 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++ +KL + G + + LF G E IRR LLE+ I A++ LP + Sbjct: 283 ILDGIDKL----SDNGMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLPGNTK 335 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T IAT L + ++ V INA+ + E I+ + +I+D + Sbjct: 336 LSTTIATCLLVFRKSSEDK---DVFFINASQEYEKKGLE----NILTEANVDKIVDTFNE 388 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 ++ + FS M +Y + ++ K L E KL Sbjct: 389 KKEVQRFSHMANYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQT-DA 447 Query: 518 ILKPMMQQIYPYGWAES 534 LK +M + + Sbjct: 448 TLKNLMGDLGLMEINDQ 464 >gi|257451600|ref|ZP_05616899.1| type I restriction-modification system, M subunit [Fusobacterium sp. 3_1_5R] gi|317058168|ref|ZP_07922653.1| type I restriction-modification system methylation subunit [Fusobacterium sp. 3_1_5R] gi|313683844|gb|EFS20679.1| type I restriction-modification system methylation subunit [Fusobacterium sp. 3_1_5R] Length = 328 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 149/385 (38%), Gaps = 64/385 (16%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 M + + + F S F TP ++ + + D +YDPTC Sbjct: 1 MGYDIKSIKKEFAS-----KGIFYTPPELAEFLKSFVDIDTDE-----------VYDPTC 44 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G G L+ + V +GQ++ P +E Sbjct: 45 GHGSLLSVFGDEVKK-------------YGQDINPVA------------IEYIKENFPHF 79 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 +++ G T+ +D F+ K+F L+NPPF K+E +++ + + L S Sbjct: 80 HVELGDTIQEDKFSEKKFKVILANPPFSVKYEPNEEMLLDKRFKDCGI-----LSPASKA 134 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +F +H+ +KL+ G A ++ L+ E EIR+WL+EN+ I+ IV + Sbjct: 135 DYMFNLHILHKLKE----NGIAVVMNFPGILYRKNK---EGEIRKWLIENNYIDTIVHIA 187 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 F TNIAT L I K ++ +++ + + I ++ + Sbjct: 188 GKKFEDTNIATCLIIYRKNK---VTTDIKFVDSEFNLERMVSLE----EIRENNYNLSIS 240 Query: 455 IYVSRENGKFSRMLDYRTFGYRR---IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 YV +E K +D R I + L+++ L ++ A+++ ++ K+ L Sbjct: 241 TYVQKEEQKEEINIDDVNEEANRHFLIHLEETLKVNLFLVQSLEAKIDYEMFLNKIGGLV 300 Query: 512 QSFWLDILKPMMQQIYPYGWAESFV 536 + + K ++ P W E + Sbjct: 301 RK-YRSKFKNREKEEIPKQWEEQLL 324 >gi|254300673|ref|ZP_04968118.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA methylase [Burkholderia pseudomallei 406e] gi|157810477|gb|EDO87647.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA methylase [Burkholderia pseudomallei 406e] Length = 605 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 101/292 (34%), Gaps = 48/292 (16%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 L+ A + + + + T +E+ +R + + + TPR +V Sbjct: 6 HLKVAKTFLYLVRQLAAVSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVR 61 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH--- 234 L +A++ S + DP CGTGGFL A +AD + Sbjct: 62 LMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATH 121 Query: 235 ----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288 + V G + M++ D NIQ ++L++ Sbjct: 122 RELVRKIRQQVFFGSDANEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWN 174 Query: 289 --GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + L+NPPFG + ++G+F K G +LFL K+ Sbjct: 175 IQDSDCDFILTNPPFGTSESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KM 220 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L GG V+ L A IR+WLL + A+V LP + F Sbjct: 221 VLSARRGGEICTVIDEGVLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 268 >gi|294502090|ref|YP_003566155.1| Type I restriction-modification system, M subunit [Salinibacter ruber M8] gi|294342074|emb|CBH22739.1| Type I restriction-modification system, M subunit [Salinibacter ruber M8] Length = 462 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 72/408 (17%), Positives = 138/408 (33%), Gaps = 61/408 (14%) Query: 36 LPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 L + + R + + D + Y F + L + Sbjct: 44 LSLIFYKAVSDT-------YRGQLRKWTEELGDEDLARDSDLYRFTVPQGHGWEELRAQ- 95 Query: 96 TRNNLESYIASFSDNAKAI-------FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 N++ ++ + D+ L LL ++ ++ S +L + Sbjct: 96 -EENVDRFLNESLRAIEDANRQRLAGISRVDYVRE-EALTDR-LLNRLVEHLSQYDLSLE 152 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + V+ + + ++ G + T + L L+ + Sbjct: 153 RIRPNVLGRAFVDF-AQVLTDKKRGNQPPETSETIARLMVRLVAPFE---------AGDR 202 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 +YDP CG G L + H + + P L GQE++P+ A+ + I Sbjct: 203 IYDPACGIGRLLMEVARHHRE--EQQEDPTHLFLAGQEVDPDQAALARMAIAISGFHGR- 259 Query: 269 RRDLSKNIQQGSTLSKDLFTGKR----FHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGR 323 I++G +L FT + F L++ PP G+K D ++ GR Sbjct: 260 -------IERGDSLRDPKFTEGKALSQFDCVLADLPPPGQKPLPDV-------QDDPYGR 305 Query: 324 FGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F LP + + FLMH+ ++L G AA+ + L E +R+ L Sbjct: 306 FDWTDDLPGQNGDTWAFLMHITSQLGEE----GEAAVTVPRPAL-----QEAEPGLRKEL 356 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 + +L+ A++ L + +F L +L E G++ D Sbjct: 357 VTRNLLRAVIGLDSAVFEDVPTGKVLLLLREDDVEAAGGEILFYQTPD 404 >gi|257794185|ref|ZP_05643164.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9781] gi|257788157|gb|EEV26497.1| type I restriction-modification system, M subunit [Staphylococcus aureus A9781] Length = 199 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 16/206 (7%) Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DL 386 L S F+ H+ + L+ G A+VL LF G A E IRR+L+E + Sbjct: 7 LAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNY 59 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 +EA++ LP ++F+ T+I T + + +K ++ V I+A++ + GK + ++D Sbjct: 60 LEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSD 113 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 Q +I+D Y + K+S + + P R ++ L+ Sbjct: 114 AQVERIIDTYKRKATIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDL 172 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGW 531 K + + ++++ Sbjct: 173 KNIDKEIAEIEQEINAYLKELGVLKD 198 >gi|301062619|ref|ZP_07203251.1| N-6 DNA Methylase [delta proteobacterium NaphS2] gi|300443299|gb|EFK07432.1| N-6 DNA Methylase [delta proteobacterium NaphS2] Length = 421 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 64/424 (15%), Positives = 130/424 (30%), Gaps = 98/424 (23%) Query: 1 MTEFTGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54 M + S S + +W A L + I +RR++ + Sbjct: 1 MLQNNPSLKSKIDQLWNKFWAGGIANPL-TAIEQ------ITYLLFMRRMDDL--DLKQQ 51 Query: 55 VREKY------LAFGGSNIDLESFVKVAG--YSFYNTS---EYS-LSTLGSTNTRNNLES 102 ++ F G+ + E + F +S + + + ++++ Sbjct: 52 ADAEFTGEKFASRFAGTWVPPEHRNRPKEEQQPFEIEKGSLRWSKFTRMAAEEMLPHVQN 111 Query: 103 YIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-------R 153 + F + F + + + K LL + K I + Sbjct: 112 KVFPFLKDINGRESSFTDHMKNAVFIISKPSLLVEAVKTIDEIFKEIEKDSREKGQAFQD 171 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + ++YE+L+ + F TPR ++ L L+ P + + DP Sbjct: 172 IQGDVYEYLLSEIATAGK--NGQFRTPRHIIKLIAELV----------RPKLGHRIADPA 219 Query: 214 CGTGGFLTDAMNHV--------------------------ADCGSHHKIPPILVPHGQEL 247 CGTGGFL A ++ A + K G + Sbjct: 220 CGTGGFLLGAYQYIVTQLALNKGVKSLKPDEDGFKRTSVSAVLTENAKNILNETLWGYDF 279 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 + + + +++ ++ +I LSK ++ ++NPPF Sbjct: 280 DSTMVRLGLMNLMMHGID-------DPHISDKDALSKTYNEPNQYDVVMANPPFTGSI-- 330 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 DK + + + + +LF+ ++ L GG A I++ LF Sbjct: 331 DKGDINENLNL-----------RTTKTELLFIENIYRMLRK----GGTAGIIVPQGVLFG 375 Query: 368 GRAG 371 G Sbjct: 376 SAKG 379 >gi|88860313|ref|ZP_01134951.1| type I restriction-modification system, M subunit, putative [Pseudoalteromonas tunicata D2] gi|88817511|gb|EAR27328.1| type I restriction-modification system, M subunit, putative [Pseudoalteromonas tunicata D2] Length = 204 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 69/183 (37%), Gaps = 11/183 (6%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 T + L +++W +A+ + G +DF I ++RL + + V ++ Sbjct: 10 TAEKITLEELRSWLWGSADIMRGTVDSSDFKNYIFGLIFIKRLSDVFDERIADVMKEEDC 69 Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDNAKAIFE 116 ++ ++ + + + L + N +++ I + + + + Sbjct: 70 SATEAME---LIQSDNPEQFVPEDARWANLVKKTENVGESIDEAFAEIERQNTSLEKVLT 126 Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAE 175 F +L LL ++ ++F+ +L ++ + YE+LI F + + Sbjct: 127 AIQFGDK-DKLS-NELLMRLLRHFNKHKLGNKNLYKADLLGDAYEYLIGMFADDAGKKGG 184 Query: 176 DFM 178 +F Sbjct: 185 EFY 187 >gi|46143841|ref|ZP_00133971.2| COG0286: Type I restriction-modification system methyltransferase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 234 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 36/241 (14%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61 A L IW+ A ++ G DF + +L R + +E +++ + Sbjct: 5 QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64 Query: 62 FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107 NI L E +K GY Y S+ + + + ++ NL + + Sbjct: 65 DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123 Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160 S+N K +F DF +T RL +K L + K + ++ + + + YE Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI + + + +F TP++V L L L A+ K +YDP CG+G L Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233 Query: 221 T 221 Sbjct: 234 L 234 >gi|306823032|ref|ZP_07456408.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC 27679] gi|309801128|ref|ZP_07695257.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022] gi|304553664|gb|EFM41575.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC 27679] gi|308222017|gb|EFO78300.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022] Length = 640 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 64/387 (16%), Positives = 131/387 (33%), Gaps = 64/387 (16%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL------EKAGLLYKICKNFSG 142 S L +N + + + + + I + F + L + A LYK + Sbjct: 243 SKLKRSNIGPD--TKVQTMLGEFRIIRDSFRLNEVNETLGMTPLKKYASFLYKHVFH--- 297 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + T + + Y + + + +TPR + L +L + Sbjct: 298 -AIKYQTTSEDFIGRFYGEFMS-YSGGDGQTLGIILTPRHITDLMCEILNIGPEDR---- 351 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGM 259 + DP CGT GFL AM+ + S + +G E++ + + M Sbjct: 352 ------VLDPCCGTAGFLISAMHRMLSLSSSESQRRSIKKKRLYGFEIQSNMFVIAASNM 405 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 ++R +D + N+Q L ++ L NPP+ + + D Sbjct: 406 ILR-------KDGNSNLQCCDFLKQNPSQVQLDGATVGLMNPPYSQGSKDDP-------- 450 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 S + F+ HL + L G RAA+++ S + E Sbjct: 451 --------------SQYELSFVEHLLDSL----TEGARAAVIVPQSSM--TGKTKDEKTF 490 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRN 436 + +L+ +E I+ + F+ + + + + E + I+ D + + Sbjct: 491 KESILKKHTLEGIITCNPNTFYGVGTNPVIAVFTAHEPHEPEHVAKFIDFRNDGYEVRPH 550 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGK 463 G D+++ +LD++ R Sbjct: 551 IGLVEGDSAKDKKQHLLDVWNGRVEAP 577 >gi|166368339|ref|YP_001660612.1| Type I restriction enzyme EcoEI M protein [Microcystis aeruginosa NIES-843] gi|166090712|dbj|BAG05420.1| Type I restriction enzyme EcoEI M protein homolog [Microcystis aeruginosa NIES-843] Length = 677 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 98/528 (18%), Positives = 161/528 (30%), Gaps = 83/528 (15%) Query: 44 LECALEP-----------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 L E + + + + + E K + SEY Sbjct: 30 LSAVFEECHNYIYANEGMLKDKIFHEMVKLIIIKLHDEKSAKQSVNFGVTASEY---KAI 86 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N + S ++ + K + F F+ +L K L I I L Sbjct: 87 VANKSDEFMSRLSQLFTSIKNHYRGF-FTDDTFKL-KPLTLAYIVGRLQYINLT--KTSG 142 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++ + R +F TP +V LA ++ P + DP Sbjct: 143 DIKGEAFQTFVNR---HQRGDRGEFFTPHPIVRLAVEMI----------DPKPNEKIIDP 189 Query: 213 TCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 CG+GGFL A+NHV G E P+ V ++GM+ E Sbjct: 190 ACGSGGFLIQAINHVRQNNPEFDIASFVQESITGIEFNPD---VALSGMIRLVFEGGTGS 246 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGR 323 + I + L +D F L+NPPFG K + + + K HK+ G Sbjct: 247 E----IICTNALIEDEKLNNSFDVILTNPPFGNKGKVEDQKILKSYLLARKWHKSASNG- 301 Query: 324 FGPGLPKISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P + G +LF+ L GGR AI+L L IR W Sbjct: 302 -WEVSPTVLAGQSPDILFIEKSIKLLR----AGGRMAIILPDGLL----QNISNGPIRHW 352 Query: 381 LLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 L I +V++P + F + T I T L ++ + Sbjct: 353 LRSQTKILGVVSIPPEAFVPYGTGIKTSLLVVQKL-PANHDSCFMAQIKKIGYDVKGQTI 411 Query: 439 KKRRIINDDQRRQ----IL--------DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486 KR R + I+ + S NG+F++ Y ++ + Sbjct: 412 YKRNESGVIARTKSGLPIVDDDIDDISQSFRSFINGEFAQ---NSDCIYT----VKNTLL 464 Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + LD L + +I + + +S Sbjct: 465 NSRLDAEHYLP-NDQKLLEHLKSIGAKPLGEIADILREAADFRLARDS 511 >gi|254410592|ref|ZP_05024371.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC 7420] gi|196182798|gb|EDX77783.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC 7420] Length = 86 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 8/78 (10%) Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655 + I +YF+ EV PHV DA++ D ++GYEI+FN++FY++QP R L+++ Sbjct: 13 KQQIHEYFLEEVRPHVEDAWL--------DLSKTQIGYEISFNKYFYKHQPLRSLEEVTR 64 Query: 656 ELKGVEAQIATLLEEMAT 673 ++ +E + LL ++ + Sbjct: 65 DILELEQETEGLLRQLVS 82 >gi|301299984|ref|ZP_07206209.1| putative type I restriction-modification system, M subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852375|gb|EFK80034.1| putative type I restriction-modification system, M subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 463 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 166/500 (33%), Gaps = 77/500 (15%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG-----YSFYNTSEYSLSTLGST 94 +LR+ + + + V++KY + D + + Y Y +++ L + Sbjct: 35 VLRKFDK--DSSILEVQKKYEESRETVQDAQFVIAPQDTYYHHYQMYKANKFEYVELVKS 92 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 I + K IF+ D + + L F ++ + Sbjct: 93 LYN------IEEKNPKLKNIFQ--DVRGSTSSLPSET-------AFEKVDSRNEVS---- 133 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +E + T +++ L T L+ + + ++YDP Sbjct: 134 ----FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPAL 180 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GT L G + +GQ++ + + ++ + D ++ Sbjct: 181 GTASLL---------LGINQAALKENRYYGQDISTQAVKTAIMNAIVNDIAEDKFEFKNE 231 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 N TL+ + + +S+PP KW D++ + +P + Sbjct: 232 N-----TLANNW-EFGKVDIVVSDPPINMKWNVDRNLSQDRRYRDYGE-----MP--NKA 278 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 F++ +KL + G + + LF G E IRR LLE+ I A++ LP Sbjct: 279 DWGFILDGIDKL----SDNGMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLP 331 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + T IAT L +L + V INA+ + E I+ + +I+D Sbjct: 332 GNTKLSTTIATCLLVLRKSSEDR---DVFFINASQEYEKKGLE----NILTEANVDKIVD 384 Query: 455 IYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 I+ ++ K FS + Y + ++ K L E KL Sbjct: 385 IFNEKKEEKGFSHVASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQ 444 Query: 514 FWLDILKPMMQQIYPYGWAE 533 L+ +M+ + Sbjct: 445 T-DATLESLMKDLGLVEIDN 463 >gi|319948098|ref|ZP_08022263.1| putative type I restriction system adenine methylase [Dietzia cinnamea P4] gi|319438232|gb|EFV93187.1| putative type I restriction system adenine methylase [Dietzia cinnamea P4] Length = 649 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 34/239 (14%) Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + +YDP CG L + + G ++ A+ + Sbjct: 182 ANHPGGVVYDPACGFASALIELAD----------TSQFDDYIGHDINDRALAIAEVRAAL 231 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 R+ + + L D R ++ PPF + + D + Sbjct: 232 HRVPL--------QLAEADILRTDPDPELRADVVIAEPPFAMRMDVDSRLTDPRF----- 278 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F G P ++ +L H L GRA I+ PLF G E IR + Sbjct: 279 --FNFGAPPPNNADTAWLQHAIAHL----TDTGRAFIITPHGPLFRGGV---EGRIRAEI 329 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 L +E IV LP + T+I LW+L R+ +R V I+++D+ + ++ + Sbjct: 330 LRQGCVETIVGLPGGMAAYTSIPLALWVL--RRPNNKRSDVLFIDSSDVDDAEKHVARW 386 >gi|219871847|ref|YP_002476222.1| restriction enzyme subunit alpha/N-6 DNA methylase [Haemophilus parasuis SH0165] gi|219692051|gb|ACL33274.1| restriction enzyme, alpha subunit/N-6 DNA methylase [Haemophilus parasuis SH0165] Length = 637 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 70/412 (16%), Positives = 145/412 (35%), Gaps = 56/412 (13%) Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 +Y F N++ + K G Y + +L + ++ F + Sbjct: 214 EYKNFDIDNLNGDEI-KTDGQKIYEAIQANLDRAQVKPQVKK-DKLLSQFLV-IRDTKAI 270 Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + +ST+ + I ++ + + D + Y + + + Sbjct: 271 NEINSTLGKTPLKHYTQFIYEHIYKNIKYIHSAEDY-LGRFYGEFMS-YSGGDGQTLGIV 328 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHH 234 +TPR +V L L+ +++DP CGT GFL AM+H+ D + Sbjct: 329 LTPRHIVELFCELI----------DLKPTDSVFDPCCGTAGFLIAAMHHMLQKTDKEAEK 378 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRF 292 + HG EL+P + M++R D N++Q L ++ K Sbjct: 379 RKIRKEQLHGIELQPYMFTIATTNMILRG-------DGKSNLEQEDFLKQNPAQLQLKGC 431 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + + NPP+ + + + + LF + L Sbjct: 432 NVGMMNPPYSQGSKANPN--------------------------LFEISFTEHLLDSLTA 465 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G+A +++ S + E I+ +L+ +E ++ L + F+ + + S Sbjct: 466 DGKAIVIVPQSSM--TGKSKEEQAIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFST 523 Query: 413 RKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 E+ V+ IN D + ++ G I D+++ +LD++ R + Sbjct: 524 GIPHEKDKIVKFINFENDGFEVQKHIGLVETISAKDKKQHLLDVWFGRIEAE 575 >gi|256617062|ref|ZP_05473908.1| type I restriction-modification system M subunit [Enterococcus faecalis ATCC 4200] gi|256596589|gb|EEU15765.1| type I restriction-modification system M subunit [Enterococcus faecalis ATCC 4200] Length = 241 Score = 116 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 29/217 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y S L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 LI +F SE + A +F TP V + ++ Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKER 217 >gi|325268989|ref|ZP_08135610.1| type I restriction-modification system DNA-methyltransferase [Prevotella multiformis DSM 16608] gi|324988610|gb|EGC20572.1| type I restriction-modification system DNA-methyltransferase [Prevotella multiformis DSM 16608] Length = 176 Score = 116 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 15/161 (9%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA--FGG 64 + LAN IW E + + ++ VILPFTLLRRL+C LE + E Sbjct: 2 TEQELANVIWDIKEVIRNYYDDSEVEDVILPFTLLRRLDCVLEDKYDVILEALDGTPAEM 61 Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF---- 118 LES ++ G +F+N S SL L + ++YI F+ N K I +F Sbjct: 62 RKYKLESLMRQNGLTFFNLSGLSLRKLLNSPDQIGDAFKTYIEGFTPNVKDILANFVHED 121 Query: 119 ------DFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD 152 D S ARLE+ L+ + F +LHP V + Sbjct: 122 GDSGIVDLSKIYARLERGNKLFAVVMQFVEKADLHPSKVSN 162 >gi|254168930|ref|ZP_04875770.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469] gi|197622194|gb|EDY34769.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469] Length = 760 Score = 116 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 81/399 (20%), Positives = 149/399 (37%), Gaps = 71/399 (17%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 Y Y T++ + L T R +S I SD + + F F T L + Sbjct: 208 YKKYETAKEIMEDLVKTIIRELKKSKI--PSDKIENLETAFSFMKTHTTLTTDKEF--VI 263 Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFG------SEVSEGAEDFMTPRDVVHLATALL 191 K I+ + + + + + Y ++ +F + + +TP + L L Sbjct: 264 KLIDDID---EKLNNFIKTYKYYDILGKFYVEFLRYANSDKKLGIILTPPHITELFCELA 320 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HKIPPILVPHGQEL 247 D++ + D CGTGGFL AM + + S K G E Sbjct: 321 EITKDSI----------VLDNCCGTGGFLISAMKKMIEKASSNSKKIKEIKEKQIVGIEY 370 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----TLSKDLFTGKRFHYCLSNPPFGK 303 + +A+ + M++ D NI GS T+ K++ + + L NPP+ Sbjct: 371 QDHIYALAITNMIVHG-------DGKTNIYHGSCFDETIKKEVKEKFKPNVGLLNPPY-- 421 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K + E K F+++ + LE GG AI+ Sbjct: 422 ---KIEKDDTNEFK--------------------FVLNNLSMLEP---GGKCVAILPMRC 455 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 L E ++ LL+N +EA++++P DLF+ + T + +++ K KV Sbjct: 456 VLATDGED---YEFKKKLLKNHTLEAVMSMPDDLFYPVGVVTAVIVITAHKPHPDNKKVW 512 Query: 424 L-INATDLWTSIRNEGKKRRIINDDQRRQI-LDIYVSRE 460 D + I+++G+ Q ++ + Y+++E Sbjct: 513 FGYFKDDGFIKIKHKGRVDYYNRWPQIKETWVSAYINKE 551 >gi|298346416|ref|YP_003719103.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298236477|gb|ADI67609.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus curtisii ATCC 43063] Length = 646 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 71/392 (18%), Positives = 135/392 (34%), Gaps = 64/392 (16%) Query: 82 NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNF 140 + + S +G ++ L ++ FS I + F + L K L + Sbjct: 241 IRTRLTRSNVGPDAKKDKL---LSEFS-----ILKTSFRLNEKNDALGKKTPLRFYTEFL 292 Query: 141 SG---IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + + + Y + + + +TPR + L LL D Sbjct: 293 YERVFKNIKYQKTSEDFIGRFYGEFMS-YSGGDGQTLGIILTPRHITDLMCELLDIKIDD 351 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAV 254 + + DPTCGTGGFL AM+ + K HG EL+ AV Sbjct: 352 V----------VLDPTCGTGGFLISAMHRMLSMADTDVQRKSIKKKQLHGFELQSNMFAV 401 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAV 312 A M++R +D + N++ L K+ K L NPP+ + + D + Sbjct: 402 AAANMILR-------KDGNSNLECCDFLRKNTAQVQLKGATVGLMNPPYSQGTKADTEQY 454 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 E + L G RAA+++ S + Sbjct: 455 E--------------------------LSFIEHLLDSLTVGARAAVIVPQSSM--TGKSK 486 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLW 431 E + + +L+ +E ++ ++ F+ + + I + + ++R + I+ D + Sbjct: 487 AEKQFKNSILDKHTLEGVITCNSETFYGVGVNPVIAIFTANEKHDKRKVCKFIDFRDDGY 546 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + G D+R+ +LD++ R Sbjct: 547 EVRAHVGLLEGDSAKDKRQHLLDVWFGRVEAP 578 >gi|194246615|ref|YP_002004254.1| Type I restriction-modification system methyltransferase subunit [Candidatus Phytoplasma mali] gi|193806972|emb|CAP18407.1| Type I restriction-modification system methyltransferase subunit [Candidatus Phytoplasma mali] Length = 925 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 89/513 (17%), Positives = 178/513 (34%), Gaps = 95/513 (18%) Query: 84 SEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKI 136 SE ++ + N S + F N F+ S ++ + +L KI Sbjct: 181 SEQNIKNINELYLWENFKNTPDNSLLEFFKKNIIPEFQKKYSSDVFIQTEIKNSSVLRKI 240 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE--GAEDFMTPRDVVHLATALLLDP 194 + ++L + + + +E+ I + + ++ TPR +V ++ Sbjct: 241 IQLLDPLKLI--DLETDIKGDAFEYFISVYSGGHGQKTDLGEYFTPRHIVKNTVKIV--- 295 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249 +P + T+ DP CGTGGFL + H+ S K GQE+ Sbjct: 296 -------NPKIGETILDPFCGTGGFLIEVFKHIHQQISLDDKTLLKKLQKETIFGQEIT- 347 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 T + M++ D NI Q +L + +++ ++N PFG Sbjct: 348 STSRLAKMNMILAG-------DGHNNIIQCDSLK--VTNKQKYDLIITNIPFG------- 391 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + L++ N L+ GGR AI++ L N Sbjct: 392 ----------------------NQKEQLYIETCLNFLKK----GGRMAIIIPDGILSN-- 423 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI--- 425 +R+ L N I+ I+++P +F T++ T + I +++K + +++ Sbjct: 424 --QKNLFLRKKLYNNFDIK-IISMPMGMFEPYTSVKTSILIANSKKENQTNSFIKIYKIE 480 Query: 426 -NATDLWTSIRNEGKKRRIINDDQRRQILDIYV---------SRENGKFSRMLDYRTFGY 475 + L + + + ++L IY S N K + + Sbjct: 481 SDGFSLDKKRKKLLTIQNDWDRYHL-EMLKIYTTIPTENNNYSFLNQKEIFVTLNNDYPK 539 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 ++ + ++ K A +E I + K+S + + L + +I P Sbjct: 540 IKLSDVVNIQKGNNPPKDEKAYIEGKIPFFKVSDIAKFHIKLNLSESVHKINP------A 593 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 K ++K + +L + + A KD Sbjct: 594 YKTTLKLFKKNSLLIPTTGESCKLNHRALISKD 626 >gi|187927116|ref|YP_001897603.1| N-6 DNA methylase [Ralstonia pickettii 12J] gi|309780179|ref|ZP_07674930.1| type I restriction-modification system methylation subunit [Ralstonia sp. 5_7_47FAA] gi|187724006|gb|ACD25171.1| N-6 DNA methylase [Ralstonia pickettii 12J] gi|308920882|gb|EFP66528.1| type I restriction-modification system methylation subunit [Ralstonia sp. 5_7_47FAA] Length = 710 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 102/335 (30%), Gaps = 76/335 (22%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 KA ++ I + V+ YE +R ++ +TPR + A Sbjct: 270 KAAIVRTIQQLLDLNIKSAMNSGTDVLGKFYEVFLRYGN--GAKEIGIVLTPRHITRFAV 327 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQE 246 + ++DP CGTGGFL A +HV + G E Sbjct: 328 DAVGV----------SPSDLVFDPACGTGGFLVAAFDHVRAKTKGAPLERFKRFGLFGIE 377 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-------SKDLFTGKRF------- 292 E A+ + M+ R D NI + + D ++ Sbjct: 378 QESSVAALAIVNMIFRG-------DGKNNIVEADCFNRFLTRSTNDGHATAQYVKAKPKL 430 Query: 293 -----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKL 346 NPPF K + + RF L ++DG++L + Sbjct: 431 GEEPITRVFMNPPFALKKSDEHEW-----------RFVETALKSMADGALL---LAIVPM 476 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + GG A RR LLE+ + A+V+LP +LF+ + Sbjct: 477 SVVSEGGSAGA-------------------WRRPLLEHHSVVAVVSLPEELFYPVAVQAV 517 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 IL V A + R KR Sbjct: 518 AIILRKGVPHRAEQPVL--WARVVNDGYRKSKGKR 550 >gi|282860339|ref|ZP_06269407.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010] gi|282586837|gb|EFB92074.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010] Length = 811 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 112/335 (33%), Gaps = 54/335 (16%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 ++ G L K+ + D + +YE ++ S + + + TPR++V Sbjct: 259 KIIDHGCLLKVIEELE--PWSFIGTGDDIKGAVYEIFLK---STLRGDFDQYFTPREIVD 313 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------ADCGSHH 234 P + + DP CG+GGFL + +V D Sbjct: 314 FIVKY----------ADPKIGDKILDPACGSGGFLIQSFLYVNQKIIDTPCSELDRKLKF 363 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 G E + + H + +++ D NI QG +LS F+ Sbjct: 364 NELIDKCLWGGEADEDLHVLAKINLIMHG-------DGYNNIYQGDSLSNKKLPNDTFNL 416 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPPF + + +++ G+ R L +LF+ L GG Sbjct: 417 ILTNPPFTIPYT--FKDILNKYEMGQ-NRESQEL------DILFVEKCIRAL--DAKAGG 465 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411 IVL L R+WLL I ++LP F T + L Sbjct: 466 EMYIVLPEGLLN----LPYYQNFRKWLLGKCYITLSISLPEGAFIPFGKSVSKTAILGLR 521 Query: 412 NRKTE--ERRGKVQLINATDL-WTSIRNEGKKRRI 443 + + + V L A ++ + ++ KK Sbjct: 522 KKNQQGSNKPDFVFLGTAKEVGYEVGKSVYKKINK 556 >gi|15668302|ref|NP_247097.1| type I restriction-modification enzyme 2 subunit M [Methanocaldococcus jannaschii DSM 2661] gi|2495819|sp|Q57596|Y132_METJA RecName: Full=Uncharacterized protein MJ0132 gi|1592267|gb|AAB98113.1| type I restriction-modification enzyme 2, M subunit [Methanocaldococcus jannaschii DSM 2661] Length = 220 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 G P ++ + + IVL S LF G E +IR+ ++E DL Sbjct: 26 GYPPKQSADWAWVQLMLYFARK------KVGIVLDSGALFRGGK---EKKIRKEIVEKDL 76 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 IEAI+ LP LF+ + IL+ K EER+GK+ INA+ + ++ + + Sbjct: 77 IEAIILLPEKLFYNVTAPGIVMILNKNKPEERKGKILFINASLEFEKHPEV-RRLNRLGE 135 Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRT 472 + +I+D+Y + E+ + FSR++D Sbjct: 136 ENIDKIVDVYENWEDIEGFSRVVDLEE 162 >gi|159026847|emb|CAO89098.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 677 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 127/375 (33%), Gaps = 51/375 (13%) Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + + + + + E K + SEY N + ++ + Sbjct: 49 KDKIFHEMVKLIIIKLHDEKSAKQSVNFGVTASEY---KAIVANKSDEFMLRLSQLFTSI 105 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 K + F F+ +L K L I I L + ++ + R Sbjct: 106 KNHYRGF-FTDETFKL-KPLTLAYIVGRLQYINLT--KTSGDIKGEAFQTFVNR---HQR 158 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +F TP +V LA ++ P + DP CG+GGFL A+NHV Sbjct: 159 GDRGEFFTPHPIVRLAVEMI----------DPKPNEKIIDPACGSGGFLIQAINHVRQNN 208 Query: 232 SHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 G E P+ V ++GM+ E + I + L +D Sbjct: 209 PEFNIATFVQESITGIEFNPD---VALSGMIRLVFEGGTGSE----IICTNALIEDEKLN 261 Query: 290 KRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGRFGPGLPKISDGS---MLFL 339 F L+NPPFG K + + + K HK+ P I G +LF+ Sbjct: 262 NSFDVILTNPPFGNKGKVEDQKILQSYLLARKWHKSASNS--WEASPTILAGQSPDILFI 319 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 L GGR AIVL L IR WL I +V++P + F Sbjct: 320 EKSIKLLR----AGGRMAIVLPDGLL----QNISNGPIRHWLRSQTKILGVVSIPPEAFV 371 Query: 399 -FRTNIATYLWILSN 412 + T I T L ++ Sbjct: 372 PYGTGIKTSLLVVQK 386 >gi|323441376|gb|EGA99035.1| hypothetical protein SAO46_2663 [Staphylococcus aureus O46] Length = 630 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 70/428 (16%), Positives = 142/428 (33%), Gaps = 66/428 (15%) Query: 92 GSTNTRNNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK--AGLLYKICKNFS-GI 143 N ++ Y+ + + + I E F F +L + + L K FS + Sbjct: 232 DGDKIYNAVQMYLKQ-NADIRPAKNGEILESFMFIKNDLKLNRIHSQLNMTPLKYFSVKL 290 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + ++ + Y + ++G +TPR + +L L+ Sbjct: 291 KNKFVHNDMDILGSFYGEFV-KYGGNDGNALGIVLTPRHITNLMCELISINHTDF----- 344 Query: 204 GMIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 + DP CG+GGFL AMN +AD K HG EL M+ Sbjct: 345 -----VLDPCCGSGGFLVTAMNKMFNLADTKEEIKSIKQNQIHGIELTQSLFTTATTNMI 399 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +R D N+++ D + + + L NPP+ + K+ + + Sbjct: 400 LRG-------DGKSNLRRDDVFHVDKEYYKDKINKILLNPPYSQAKTKNLSHLSEIS--- 449 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 F+ ++ GG+ A ++ S + + +R Sbjct: 450 ------------------FIKESLEYMKT----GGKLAAIIPQSTMI--GKTKNDKNYKR 485 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEG 438 +LE +E ++ L D F+ + + I + ++ + +V +N D + ++ G Sbjct: 486 EILEKHSLETVITLNKDTFYGVGVNPCIAIFTAGIPQDEKKRVNFVNFTDDGYVVRKHIG 545 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP-LRMSFILDKTGLAR 497 ++ +L++ E+ D I L F ++ Sbjct: 546 LVGDGTEKSKKEYLLNVLNDYEDA------DTNFLVKSPITWEDEWLHSFFYYNEEIPTD 599 Query: 498 LEADITWR 505 + + T Sbjct: 600 EDFEKTIA 607 >gi|229148006|ref|ZP_04276345.1| N-6 DNA methylase [Bacillus cereus BDRD-ST24] gi|228635431|gb|EEK91922.1| N-6 DNA methylase [Bacillus cereus BDRD-ST24] Length = 1009 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 106/579 (18%), Positives = 194/579 (33%), Gaps = 99/579 (17%) Query: 33 KVILPFTLLRRLECAL--EPTRSAVR-------EKYLAFGGSNIDLESFVKVAGYSFYNT 83 + I+ LLR E L +P +R E L + + ID + + +F+ Sbjct: 12 EYIIELLLLRIFEVKLKRDPDFKELRNLFVEKNETKLFYYLNTIDSRTITEELNKNFFPF 71 Query: 84 SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 L+ + NL + + +F + +F++ + +G L +I + S + Sbjct: 72 YGNILNEAR-KVFQGNLSIKVQDQLVLIQEVFRNSNFTNNVQ----SGNLEEIIQAVSDL 126 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + + ++ + E + + ++ F TP + H L+ P Sbjct: 127 D-EERLLNTDLLGDAIESALSE--TGGTKDIGLFRTPDHIRHFMLGLV----------EP 173 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP------------------------- 238 + T++DP CGTGGFL D V + + P Sbjct: 174 TINDTIFDPACGTGGFLFDGFEFVMESILKEEKWPGTKAHPELQEWFKGYFNKTTVKFPS 233 Query: 239 --------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG 289 +G E + IR L NIQQG +L+ D + Sbjct: 234 DEEALNFYRSGIYGIEYLGVIRKMAAVNFYIRGLNPH-------NIQQGDSLAMFDQSSI 286 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 K L+NPPFG + +++ E + E S+ + LF+ + + L+ Sbjct: 287 KSKSVVLANPPFGAERDQEAYPNVWEDYSKE-----------SETTTLFVKLMLDSLKD- 334 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406 GG+ A+V+S L +R+ +LE + ++ LP +F T Sbjct: 335 ---GGKCAVVVSEGFL--TWEQGSAKALRKLILEEAKLIGVIGLPQGVFVSKTGIGPKTS 389 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + K E Q+ N D +T G R + Q + LDIY + + Sbjct: 390 ILFFEKGKPTENVWFYQVTN--DGYTK----GTNRTVTKGSQLIEALDIYHNYIKKGLTP 443 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--SFWLDILKPMMQ 524 +F + V R + + + + + +K + LK Sbjct: 444 KESPNSFV---VPVDRINTLDPRIKEKIRQEITLTMQEKKDKEKTKLIKDIDAKLKVSKV 500 Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563 Y KS + K K+ + +F +A Sbjct: 501 DSNEYDQKIRQFNNVWKSKIKNEIAKKIDKTHVYSFNSA 539 >gi|134097473|ref|YP_001103134.1| putative type I restriction system adenine methylase [Saccharopolyspora erythraea NRRL 2338] gi|133910096|emb|CAM00209.1| putative type I restriction system adenine methylase [Saccharopolyspora erythraea NRRL 2338] Length = 467 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 56/338 (16%) Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L D F R L NPPFG + D R+ GLP S+ + Sbjct: 18 FGDSLRADAFPDTRVDTVLCNPPFGVRDWGHDD-------LAYDPRWVYGLPPRSESELA 70 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H LE GG A +++ +R L+ + A++ LP Sbjct: 71 WVQHCLAHLEP----GGLAVVLMPPGA----AERPSGRRVRAELIRQGALRAVIGLPPGA 122 Query: 398 FFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +++ ++W+L+ GK V ++A+ S ++I++++ Sbjct: 123 APPLHLSLHIWVLTCPDEALATGKSVLFVDASSGSVSD---------------QRIVELW 167 Query: 457 VSRENGK--------FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI---- 502 + + ++ L + R + + + A L ++ Sbjct: 168 RDFDEAEDRFEAVPDVAQRLSIVDLLDATVDVTPARRVHIRTAISPNEQAELAEELRKRL 227 Query: 503 --TWRKLSPLHQSFWLDILKPMM---------QQIYPYGWAESFVKESIKSNEAKTLKVK 551 +L+ L + +D +P + P W + V + ++ + Sbjct: 228 GRACDELAQLASTPTIDSKQPSDTPMTTVWSVSEGEPMTWRTATVADLLRGGALALHRAT 287 Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589 + D ++D+ GE P +L + Sbjct: 288 PTHRTGSTRNADVASNDVAILTLSDLRGEPRPSGSLRD 325 >gi|291545711|emb|CBL18819.1| Type I restriction-modification system methyltransferase subunit [Ruminococcus sp. SR1/5] Length = 267 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 101/293 (34%), Gaps = 35/293 (11%) Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + HG +++ + M+ +E + I+ +LS ++ L+N Sbjct: 2 NHMFHGYDMDRTMLRIGAMNMMTHGIE-------NPYIEYRDSLSDQNADKDQYSLVLAN 54 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + + + + + K +LFL ++ GGR A Sbjct: 55 PPFKGSLDAESVSGDL-----------LKVCKTKKTELLFLALFLRIMK----IGGRCAC 99 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ LF + IR+ ++EN +EA++++P+ +F ++T + I + Sbjct: 100 IVPDGVLF--GSSRAHKSIRKEIVENQRLEAVISMPSGVFKPYAGVSTAILIFTKT-EHG 156 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKFSRMLDYR 471 +V + + + KR + ++ I++ + + R+ S M+ + Sbjct: 157 GTDQVWFYD---MNADGFSLDDKRTPVTENDIPDIIERFKNLDKEAERKRTDQSFMVPKK 213 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + + + L +D L+ ++ Sbjct: 214 DIVENDYDLSINKYKEIEYTPVEYPPTSEIMANIRELELEIGKEMDELERLLG 266 >gi|113460576|ref|YP_718640.1| restriction enzyme subunit alpha [Haemophilus somnus 129PT] gi|112822619|gb|ABI24708.1| site-specific DNA-methyltransferase (adenine-specific) [Haemophilus somnus 129PT] Length = 656 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 65/391 (16%), Positives = 123/391 (31%), Gaps = 73/391 (18%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAK-----------AIFEDFDFSSTIARL-EKAGL 132 + +S L R + + DN K + F+ ++ EK Sbjct: 219 NFDISDLIGDKIRTDGSKIYKAIEDNLKRANVSPEVKRDKLLNQFNIIKDNNKINEKNSN 278 Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-------SEGAEDFMTPRDVVH 185 L K + L+ + ++ E I RF E + +TPR + Sbjct: 279 LGKTPLRYFTEVLYNGIFTNIKYNSSTEDYIGRFYGEFMSYSGGDGQSLGIILTPRHITD 338 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVP 242 L LL + DP CGT GFL AM+H+ Sbjct: 339 LFCELLDI----------QPTDKVLDPCCGTAGFLIAAMHHMLSKTEDENEQIEIRKNRL 388 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPP 300 G EL+ + M++R D N++ L+++ K + NPP Sbjct: 389 FGIELQDYMFTIATTNMILRG-------DGKSNLENQDFLAQNPSKIQLKGCTVGMMNPP 441 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + + +++ + E N L G + A+++ Sbjct: 442 YSQGSKQNSELYEINF--------------------------VNHLLESLVEGAKVAVIV 475 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 S F G+ E ++ +L+ +E ++ L + F+ + + + + Sbjct: 476 PQST-FTGKTKD-EQNLKTKILKKHTLEGVITLNKNTFYGVGTNPCIGVFTAGIPHSKTK 533 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 K + IN + + K + DD + Sbjct: 534 KAKFIN----FENDGYIVSKHIGLIDDGSAK 560 >gi|316985077|gb|EFV64030.1| N-6 DNA Methylase family protein [Neisseria meningitidis H44/76] Length = 157 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 23/143 (16%) Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 +P +G FL+HL L+ G+ AI+L LF G A E+ IR LL DLI Sbjct: 18 IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR------------GKVQLINATDLWTSIR 435 + I+ LP +LF+ T I + ++ + + G V +I+A+ + Sbjct: 71 KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFI--- 127 Query: 436 NEGKKRRIINDDQRRQILDIYVS 458 +G K R + + +I+D + + Sbjct: 128 KDGNKNR-LREQDIHKIIDTFTN 149 >gi|307128877|ref|YP_003880893.1| type I restriction-modification system methyltransferase subunit [Dickeya dadantii 3937] gi|306526406|gb|ADM96336.1| Type I restriction-modification system methyltransferase subunit [Dickeya dadantii 3937] Length = 142 Score = 113 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 63/113 (55%), Positives = 83/113 (73%), Gaps = 2/113 (1%) Query: 1 MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59 M + +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR VR+ Y Sbjct: 1 MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60 Query: 60 LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 LA S IDL + +VA +SFYNTSEYSL TLG+++T +NLE YI+ ++ N Sbjct: 61 LAEKQSGIDLGLVLPEVARFSFYNTSEYSLETLGASDTGDNLELYISQWAMNL 113 >gi|330467457|ref|YP_004405200.1| hypothetical protein VAB18032_17490 [Verrucosispora maris AB-18-032] gi|328810428|gb|AEB44600.1| hypothetical protein VAB18032_17490 [Verrucosispora maris AB-18-032] Length = 683 Score = 113 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 36/274 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E+L ++ S + TP V + A+ G+ +D T GTG Sbjct: 143 AFEYLHSQYVSSAQSVSGLAGTPESVADVMVAVA------------GVGTHTFDFTSGTG 190 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKN 275 L A + G QE+ P+ + + L + Sbjct: 191 SILRMAADRALRSG------ATTRCFAQEINPQYALITSLRLWFVHLRAQQAGHHTPPPV 244 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + G +L D R ++N PFG + R+ GLP ++ Sbjct: 245 VHVGDSLLADALPDLRADVVVANFPFGIHDWGHD-------RLAYDPRWTYGLPPRTEPE 297 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + ++ H L G A +++ + IR L+ + AI+ALP Sbjct: 298 LAWVQHALAHLSP----NGTAVVLMPPATASRPAGR----RIRAELIRRHALRAIIALPA 349 Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINAT 428 L TNI ++W+L+ + R G++ ++AT Sbjct: 350 GLMLPTNIGLHIWVLAQPDPQHPRVGELLFVDAT 383 >gi|167760902|ref|ZP_02433029.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704] gi|167661505|gb|EDS05635.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704] Length = 304 Score = 113 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 38/277 (13%) Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGM 259 +P + + D CGTGGFL A+ H+ + G E +P H +C + Sbjct: 6 NPQLGEQVLDFACGTGGFLVCALEHLRKQVRNIDDEAQLQNSILGVEKKPLPHMLCTTNL 65 Query: 260 LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 ++ ++ + I+ ++L K++ + L+NPPFG ++D +E Sbjct: 66 ILHNID-------NPQIRHDNSLGYPIKNIKPKDKVDIILTNPPFGG---IEEDGIEDNF 115 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 K + + LFL+ + KL+ GRAAIVL LF + Sbjct: 116 PANY---------KTKETADLFLVLMMYKLKQT----GRAAIVLPDGFLFGEGVKTA--- 159 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 I+ LL + IV LP +F T I T L L ++ Sbjct: 160 IKEKLLNEFNLHTIVRLPNGVFSPYTGINTNLLFLERG----TTQEIWFYEHQLPEGYKN 215 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 K +++ + + + +R+ + + Sbjct: 216 YTKTKPIKLDEFEVEK--AWWNARKETDCAWRVSIDE 250 >gi|255066319|ref|ZP_05318174.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256] gi|255049529|gb|EET44993.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256] Length = 637 Score = 113 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 58/334 (17%), Positives = 120/334 (35%), Gaps = 53/334 (15%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I + + + D + Y + + + +TPR +V L L+ Sbjct: 289 IYDHIYKNIKYIHSAEDY-LGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELIDI-- 344 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETH 252 +++DP CGT GFL AM+H+ D + + HG EL+P Sbjct: 345 --------KPTDSVFDPCCGTAGFLIAAMHHMLQKTDKEAEKRNIRKNQLHGIELQPYMF 396 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKD 310 + M++R D N++Q L ++ K + + NPP+ + + + + Sbjct: 397 TIATTNMILRG-------DGKSNLEQEDFLKQNPAQLQLKGCNIGMMNPPYSQGSKANPN 449 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 L+ + L G+A +++ S + Sbjct: 450 --------------------------LYEISFTEHLLDSLTEDGKAIVIVPQSSM--TGK 481 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATD 429 E I+ +L+ +E ++ L + F+ + + S ++ V+ IN D Sbjct: 482 TKEEQSIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFSTGIPHDKDKTVKFINFEND 541 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + ++ G I D+++ +LD++ R + Sbjct: 542 GFEVQKHIGLVETISAKDKKQHLLDVWFGRIQAE 575 >gi|325677597|ref|ZP_08157254.1| hypothetical protein CUS_4322 [Ruminococcus albus 8] gi|324110707|gb|EGC04866.1| hypothetical protein CUS_4322 [Ruminococcus albus 8] Length = 113 Score = 113 bits (284), Expect = 8e-23, Method: Composition-based stats. Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 4/98 (4%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 ++ NFIW A L G ++ + VI+P ++RR ECALE T+ AV E+Y Sbjct: 18 STEVNFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYK--KNPAYP 75 Query: 69 LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYI 104 ++ +V+GY F+NTSEY+L+ L + N +YI Sbjct: 76 AKAMCRVSGYQFFNTSEYTLAELVNDPDHLAANFRNYI 113 >gi|289423038|ref|ZP_06424856.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius 653-L] gi|289156549|gb|EFD05196.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius 653-L] Length = 270 Score = 113 bits (284), Expect = 8e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 80/249 (32%), Gaps = 46/249 (18%) Query: 1 MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------- 48 M+ L IW A++L G DF IL R + + Sbjct: 1 MSIDNKKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENITNYINEGEI 60 Query: 49 -----EPTRSAVREKYLAFGGSNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 + + + ++ + E F + F N + N LE Sbjct: 61 EAGNSDFDFAKISDEMAKEAREGLVEEKGFFILPSELFCNV---RAKAKDNENLNETLEK 117 Query: 103 YIASFSDNAK---------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP- 147 ++AK +F+DFD +S +L ++ L K+ + + L Sbjct: 118 VFRHIEESAKGSESESDFAGLFDDFDVNS--NKLGSTVAKRNEKLCKLLDGVADMNLGNV 175 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + YE+L+ + S + +F TP DV L T L + K Sbjct: 176 KDHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK------- 228 Query: 208 TLYDPTCGT 216 +YDP CG Sbjct: 229 -VYDPACGF 236 >gi|91794617|ref|YP_564268.1| N-6 DNA methylase [Shewanella denitrificans OS217] gi|91716619|gb|ABE56545.1| N-6 DNA methylase [Shewanella denitrificans OS217] Length = 630 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 69/449 (15%), Positives = 144/449 (32%), Gaps = 75/449 (16%) Query: 42 RRLECALEPTRS---------AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 +R L + + E+ S + + SF S + Sbjct: 176 KRHSDLLAFAKDLHELIWTAAKISEEDKPLLVSGTLIALMNQPFLNSFQYYSPEDMPRKW 235 Query: 93 STNTRNNLESY-IASFSDNAKA-----IFEDFDF---SSTIARLEKAGLLYKICKNFSGI 143 ++ L+ I + + + + IA+ G+LY++ K + Sbjct: 236 LEAIKDELDKADIPKAKKDTMRQPYATVAGQPNLGKPDAKIAKKYPKGVLYEVIKEINDN 295 Query: 144 ELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + V+ + Y + ++ + + +TPR V L + Sbjct: 296 VWPFISVYHNFDVVGHFYGEFL-KYTAGDKKALGIVLTPRHVTELFCDIANITKKD---- 350 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAG 258 T+ D GTGGFL AM+ + + G E P+ A+ + Sbjct: 351 ------TVIDICAGTGGFLISAMHRMLKTAMTEEERLDIKKNRLIGIENSPKMFALAASN 404 Query: 259 MLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++R +++ T+ KR + L NPP+ + Sbjct: 405 MILRGDGKANLHQSSCFEPTLKRAITVPDPALGVKRPNIGLLNPPYAQS----------- 453 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 SD + L + L+L GG AI+ S + Sbjct: 454 ---------------KSDAELHELYFVKEMLDLLEKGGTGVAIIPVSCVIMPN------- 491 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTS 433 +++ +L+ ++A++++P++LF+ T + + K + K D + Sbjct: 492 KVKHEILQKHTLKAVMSMPSELFYPVGTVTCIVVFEAHKPHKETNKKTWFGYWREDGYVK 551 Query: 434 IRNEGK--KRRIINDDQRRQILDIYVSRE 460 ++ G+ D + R + + Y + E Sbjct: 552 TKHMGRIDLNHEWQDIKSRWL-EAYSNNE 579 >gi|225076445|ref|ZP_03719644.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens NRL30031/H210] gi|224952124|gb|EEG33333.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens NRL30031/H210] Length = 637 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 120/334 (35%), Gaps = 53/334 (15%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I + + + D + Y + + + +TPR +V L L+ Sbjct: 289 IYDHIYKNIKYIHSAEDY-LGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELIDI-- 344 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETH 252 +++DP CGT GFL AM+H+ D + + HG EL+P Sbjct: 345 --------KPTDSVFDPCCGTAGFLIAAMHHMLQKTDKEAEKRNIRKNQLHGIELQPYMF 396 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKD 310 + M++R D N++Q L ++ K + + NPP+ + + + + Sbjct: 397 TIATTNMILRG-------DGKSNLEQEDFLKQNPAQIQLKGCNIGMMNPPYSQGSKANPN 449 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 L+ + L G+A +++ S + Sbjct: 450 --------------------------LYEISFTEHLLDSITADGKAIVIVPQSSM--TGK 481 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATD 429 E I+ +L+ +E ++ L + F+ + + S ++ V+ IN D Sbjct: 482 TKEEQAIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFSTGIPHDKDKTVKFINFEND 541 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + ++ G + D+++ +LD++ R + Sbjct: 542 GFEVQKHIGLVETVSAKDKKQHLLDVWFGRIQAE 575 >gi|269929053|ref|YP_003321374.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745] gi|269788410|gb|ACZ40552.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745] Length = 752 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 101/330 (30%), Gaps = 62/330 (18%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 +++ + + + + +YE F + TPR + + L Sbjct: 228 WRVLSTLEKLNVATSSFAHDYLGQLYETF---FRYTGGNTIGQYFTPRHIARMMADLC-- 282 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEP 249 + DP CGTGGFL AM D G E EP Sbjct: 283 --------ESTPSDVVIDPACGTGGFLIAAMQRAYDQSSLRYEDAIELVREKLIGYESEP 334 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 T A+ VA ML+R D I++ + + L NPPF Sbjct: 335 VTAALAVANMLLRG-------DGKTGIRKEDCFTATDYPVNACDIALMNPPF-------- 379 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 HK + +P + GR A++L +S Sbjct: 380 -----PHKKTD-------VPP---------ERFVERALEALRLRGRIAVILPTSLTVKKE 418 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI--- 425 R+ +L ++ + +V LP +LF + T + +L + R + + Sbjct: 419 NAG----WRKQILTHNTLLGVVQLPDELFQPYASATTTVVLLEKGIPHDARRETAFVRLH 474 Query: 426 -NATDLWTSIRNEGKKRRIINDDQRRQILD 454 + L IR R D I++ Sbjct: 475 YDGLTLKKGIRVPRSDGRNQVPDTVDAIVN 504 >gi|291560647|emb|CBL39447.1| Type I restriction-modification system methyltransferase subunit [butyrate-producing bacterium SSC/2] Length = 410 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 129/396 (32%), Gaps = 47/396 (11%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 KI + + + I + + + TP + + ++ D Sbjct: 22 KILEYLLSDQAADKIQEVKDEGYTEIRDIFQEEQGDRKNLKQDFTPDCICQIVAEIMKDG 81 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPET 251 D D GTG A + ++ +P + T Sbjct: 82 D-------------NIDMCSGTGALSKWANKTRGIKINEYEYSERTIPFALLDACVNGMT 128 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + A L ++ + I + + ++ + NPP+ K+ Sbjct: 129 GMISRADCLRSQIFESYALEQCGEISIPRQV--ERQNPDQYKNIIMNPPYSMKFP----- 181 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 + G +P S F++ L+ GR VL LF G Sbjct: 182 -----DTDDYEILGWKIP-KSKADFGFILRGVQHLKED----GRQIAVLPHGILFRGAQ- 230 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431 E +IRRWL+EN +I A++ +P LF T+I +L ++ E V I+A+ + Sbjct: 231 --EGKIRRWLIENHMISAVIGVPDKLFLNTSIPVFLLVI-----EHNSKDVLFIDASKEF 283 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFIL 490 + + + ++++ +++R+ + +S + Y + P R Sbjct: 284 IK----KAAQNDMEEKYIEKVVNTFLNRKEVEKYSYIASYEEIEENDFNLNIP-RYVDTF 338 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 ++ L + + K ++ L M+ + Sbjct: 339 EEEPLPDVRQILKDLKQIDEEETKIKADLYSMLNDL 374 >gi|37680386|ref|NP_934995.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] gi|37199133|dbj|BAC94966.1| type I restriction-modification system methyltransferase subunit [Vibrio vulnificus YJ016] Length = 638 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 78/453 (17%), Positives = 148/453 (32%), Gaps = 66/453 (14%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 FS N E+ R+ +L + ++L D HL+ Sbjct: 99 FSRNNWEKIENI-LDQIPFRIRSTKILDLVIHRLEELDLSEGIEIDFD------HLLLNM 151 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + + +PR ++ +L +P + T+YDP GTGG +A H Sbjct: 152 VKDSGS-SGAYYSPRPLIKAMVRVL----------NPKPLATVYDPAMGTGGVFVEAKKH 200 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 L G +L P H + +L+ ++ +L Sbjct: 201 AKGKSC----FNGLSFIGNDLSPFAHLIGALNLLLNDIDISGVSIS-------DSLLD-- 247 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 +++ + +S PFG + ++ + + +G G +FL H +KL Sbjct: 248 RDCQQYDFVISGVPFG---KVNELTKYEYYYHGYSGSLEA----------MFLKHTMDKL 294 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405 GGRAAIV+ LF + E ++R LL + A+++LP + + Sbjct: 295 AK----GGRAAIVIPDGILFGNASHLDE--LKRQLLTQFNLHAVLSLPKGTLAPYSGVKV 348 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465 + N +E+ + K I D +Y RE + S Sbjct: 349 SVLFFDNTVSEK---DIWFYELR-----TNKPLSKVNSITDSDFEDFTSLYERREVSENS 400 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ + + L +SF L K + + L Q + ++ Sbjct: 401 CLISKESLLQDK-----TLNLSFSLPKTEAGLKFDKQEMIASLK-SEQLSLVTSIENHFD 454 Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557 + + + +K K +KS + Sbjct: 455 YMSLNLECKYIHQVKLKDICKLRSGDKLNKSEV 487 >gi|330997668|ref|ZP_08321513.1| N-6 DNA Methylase [Paraprevotella xylaniphila YIT 11841] gi|329570196|gb|EGG51936.1| N-6 DNA Methylase [Paraprevotella xylaniphila YIT 11841] Length = 667 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 75/383 (19%), Positives = 122/383 (31%), Gaps = 83/383 (21%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F I +L+K + Y + + I L ++ + F F T Sbjct: 282 FKDDI-KLDKHKI-YTVVQYLQDINL--SRTDLDAKGVAFQSFMGEF---FRGDFGQFFT 334 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234 P +V + D + D +CG+GGFL A+ + D + Sbjct: 335 PNPIVEFIVNSINIDKD----------WKVLDTSCGSGGFLLYALKTIRDEANEIYGENA 384 Query: 235 ---------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 G E+ + V M+I D NI L + Sbjct: 385 ESSSWKDYWHEFAEKHLFGIEINEQISRVAKMNMIIH-------DDGHTNIITNDGLKNN 437 Query: 286 ----------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-- 333 F F ++NPPFG + D+ KE++ E G+ +I D Sbjct: 438 KTLEIENRNLKFQDGTFDLIMTNPPFGSTIKADEVNYYKEYELFEKN---LGITEIKDRI 494 Query: 334 --------------GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 +LFL L G AIV+ L S +R Sbjct: 495 ADDNNKKKWRASQSTEILFLERCYKYLN---EENGYLAIVVPDGIL----TNSTSQYVRD 547 Query: 380 WLLENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 WL+E I A+V+LP F + + + L KV ++ Sbjct: 548 WLVEKFKILAVVSLPQHTFSHVKAGVKSSILFLKKHP------KVVTQKFEQTLKDVKAL 601 Query: 438 GKKRRIINDDQR-RQILDIYVSR 459 +K + ++ +QR ++LD+Y R Sbjct: 602 VQKEKDLDKEQRTERMLDLYKER 624 >gi|153871780|ref|ZP_02000864.1| type I restriction enzyme StySPI M protein [Beggiatoa sp. PS] gi|152071755|gb|EDN69137.1| type I restriction enzyme StySPI M protein [Beggiatoa sp. PS] Length = 469 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 60/384 (15%), Positives = 113/384 (29%), Gaps = 84/384 (21%) Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 S+ E ++ +G YN + + L + + YIA +A F Sbjct: 51 PSDYRWELLIQKSGIEQYNYYQEVIKILSQAS-----DPYIAGLYAHADTFF-------- 97 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + L ++ S I + + + +YE L+ R PR + Sbjct: 98 ----KTPEQLAQVITTLSTINIPIE-----DLGEVYEILLERCAYLDGGRL--HQVPRSL 146 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---------- 233 V L P + DP GT F+ ++ Sbjct: 147 VDLMV----------ILTQPQPGELIQDPLAGTASFVVATNEYMQVINDEFSESSSQGPP 196 Query: 234 ----HKIPPILVPHGQ----ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 E + H + + L+ R+ ++ G +L + Sbjct: 197 KNQTQNQNKFCTLETNFLAVEPDLIRHRLALMNCLLHRINHSQHLP----VRWGDSLLSN 252 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 L + LS F ++ D S+ L H+ Sbjct: 253 LEKWPQADVILSILVFASDLSEELG--------------------KHDASLALLQHIYQT 292 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GGRAA++L L A ++R LL+ ++ ++ LP +F+ + Sbjct: 293 LKP----GGRAAVILPDKLL---NAVGPAQQVRGTLLDTCVLHTVLRLPHGIFYPYKVPA 345 Query: 406 YLWIL-SNRKTEERRGKVQLINAT 428 +L +E+ V + Sbjct: 346 HLLFFWRGHTADEKTENVWFYDLR 369 >gi|72160665|ref|YP_288322.1| hypothetical protein Tfu_0261 [Thermobifida fusca YX] gi|71914397|gb|AAZ54299.1| conserved hypothetical protein [Thermobifida fusca YX] Length = 680 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 93/257 (36%), Gaps = 36/257 (14%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 T++DP+CG+G L H P + +GQ+++P + + + Sbjct: 195 QQTGTVFDPSCGSGTLLHAMARHA----------PGVTLYGQDIDPAAARLARVRLQLAG 244 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++D I+ G +L D F G + +PPF + + + R Sbjct: 245 ADAD--------IRVGDSLRADAFPGLAADTVVLHPPFNQTDWGFE-------ELSFDSR 289 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + G P + + ++ H + GG A +VL + G E+ L Sbjct: 290 WRYGTPARKEPELAWVQHALAHVRP----GGTAIVVLPPAVASRGSGRRVRREL----LR 341 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + A++ALPT L LWIL N + + GKV L +A+D E + Sbjct: 342 RGALRAVIALPTGLATPMGTPLTLWILRNPEDSTDLPGKVLLFDASDGRVDDSPESSTQ- 400 Query: 443 IINDDQRRQILDIYVSR 459 + I Y Sbjct: 401 PWSAVA-HAITATYREF 416 >gi|296269612|ref|YP_003652244.1| N-6 DNA methylase [Thermobispora bispora DSM 43833] gi|296092399|gb|ADG88351.1| N-6 DNA methylase [Thermobispora bispora DSM 43833] Length = 625 Score = 111 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 62/384 (16%), Positives = 119/384 (30%), Gaps = 80/384 (20%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 L+ R+ S + TP +V L +RT+ DP CG G L Sbjct: 134 FLLDRYAEVHSRRLAE--TPPEVAEFMARLAGPG-----------VRTVLDPACGLGILL 180 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + + +GQE+E + + + + + ++ G Sbjct: 181 SAM-------------KGVEHAYGQEIEEALARIAKIRLDLTGIPGE--------VRAGD 219 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 +L D + + +PPF ++ + R+ GLP ++ + ++ Sbjct: 220 SLRDDAWPDLLVDAVVCHPPFNERNWGYD-------ELVHSPRWEYGLPPKTESELAWVQ 272 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H + L A IR LL ++A++ L Sbjct: 273 HALSHLVPGGLA--------LLLLPAVVAARRSGRRIRSNLLRRGALQAVIGLSAKTVGG 324 Query: 401 TNIATYLWILSNRKTEE---RRGKVQLINAT-----------DLWTSIRNEGKKR----- 441 T + ++WIL RK + +V + A + + R R Sbjct: 325 TGLPVHIWIL--RKPADDGPPPSRVLMAEAEPGTFDEVIEVWREFQADREREIDRPGLCR 382 Query: 442 ----RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497 + DD YV + S F R ++LR L+ + L + Sbjct: 383 TVPVIELVDDAVDVTPGRYVGAQEVSAS------DFPAIRERLLRGLKRTIELIPEAVPG 436 Query: 498 LEADITWRKLSPLHQSFWLDILKP 521 + +S L + L++++ Sbjct: 437 GGRTMPLVTVSELERIGALEMVQA 460 >gi|304387518|ref|ZP_07369707.1| type I restriction-modification system DNA-methyltransferase [Neisseria meningitidis ATCC 13091] gi|254674213|emb|CBA09997.1| type I restriction enzyme M protein [Neisseria meningitidis alpha275] gi|304338405|gb|EFM04526.1| type I restriction-modification system DNA-methyltransferase [Neisseria meningitidis ATCC 13091] Length = 157 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 23/140 (16%) Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 +P +G FL+HL L+ G+ AI+L LF G A E+ IR LL DLI Sbjct: 18 IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR------------GKVQLINATDLWTSIR 435 + I+ LP +LF+ T I + ++ + + G V +I+A+ + Sbjct: 71 KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFI--- 127 Query: 436 NEGKKRRIINDDQRRQILDI 455 +G K R + + +I+D Sbjct: 128 KDGNKNR-LREQDIHKIIDT 146 >gi|71275744|ref|ZP_00652029.1| N-6 DNA methylase [Xylella fastidiosa Dixon] gi|71163635|gb|EAO13352.1| N-6 DNA methylase [Xylella fastidiosa Dixon] Length = 188 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 21/187 (11%) Query: 317 KNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + RF G G +L H L GRAA+VL + + G E Sbjct: 11 RQRPFDRFRTAGGITSGKGDWAWLQHTLACLHDH----GRAAVVLDTGAVTRGSGSKNED 66 Query: 376 E---IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 + IR+W ++ DLI+ ++ LP +LF+ T A + +L+ RK R+ K+ L+NA+ + Sbjct: 67 KERSIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVLNKRKPAARKDKIVLLNASRRY- 125 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 +GK + + ++ R + +Y+ E G I + + L Sbjct: 126 ---KKGKPKNYLPEEDVRSLAALYLKGEPV-------AGELGV--ITQQQAEEADYNLSP 173 Query: 493 TGLARLE 499 + Sbjct: 174 GRCEAVR 180 >gi|251793527|ref|YP_003008256.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700] gi|247534923|gb|ACS98169.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700] Length = 637 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 115/318 (36%), Gaps = 52/318 (16%) Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + Y + + + +TPR +V L L+ +++D Sbjct: 304 EDYLGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELIDI----------KPTDSVFD 352 Query: 212 PTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 P CGT GFL AM+H+ D + HG EL+P + M++R Sbjct: 353 PCCGTAGFLIAAMHHMLQKTDKEDEKRNIRKNQLHGIELQPYMFTIATTNMILRG----- 407 Query: 269 RRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D N++Q L ++ K + + NPP+ + + + + Sbjct: 408 --DGKSNLEQEDFLKQNPAQIQLKGCNIGMMNPPYSQGSKANPN---------------- 449 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 L+ + L G+A +++ S + E I+ +L+ Sbjct: 450 ----------LYEISFTEHLLDSLTEDGKAIVIVPQSSM--TGKTKEEQSIKENILKKHT 497 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIIN 445 +E ++ L + F+ + + + ++ V+ IN D + ++ G + Sbjct: 498 LEGVITLNKNTFYGVGTNPCIAVFTTGIPHDKDKIVKFINFENDGFEVQKHIGLVETVSA 557 Query: 446 DDQRRQILDIYVSRENGK 463 D+++ +LD++ R + Sbjct: 558 KDKKQHLLDVWFGRIQAE 575 >gi|586070|sp|Q07605|T4BA_BACCO RecName: Full=Restriction enzyme BgcI subunit alpha; Includes: RecName: Full=Adenine-specific methyltransferase activity gi|304140|gb|AAA16626.1| restriction endonuclease alpha subunit [Bacillus coagulans] Length = 637 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 98/299 (32%), Gaps = 50/299 (16%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 ++ ++ N Y + ++G +TPR + L L+ Sbjct: 294 MDKIKSNTDFDILGNFYGEFV-KYGGNDGNPLGIVLTPRHITSLMAELIGINKSDF---- 348 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + DP CGTG FL AMN + + + +G E++ + + M Sbjct: 349 ------VLDPACGTGAFLISAMNRMLGQAENDDERRDIKQNRLYGIEIQQKLFTIATTNM 402 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 ++R D N+ + + L+ D G + L NPP+ + + D+ E Sbjct: 403 ILRG-------DGKSNLIRDNCLTFDNTIMNGYGINKILMNPPYSQ-AKNDQTQHLSE-- 452 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + F+ L GG+ ++ S + + Sbjct: 453 ------------------LSFIQQALEML----VVGGKLCAIVPQSTMV--GKNRHDKAR 488 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 ++ +L+ +E ++ L D F + + I +V +N D +R Sbjct: 489 KKQILKQHTLETVITLNKDTFHGVGVNPCIVIFKAGIKHPENKRVSFVNFEDDGHVVRK 547 >gi|167010572|ref|ZP_02275503.1| hypothetical protein Ftulh_07629 [Francisella tularensis subsp. holarctica FSC200] Length = 322 Score = 110 bits (276), Expect = 7e-22, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 101/286 (35%), Gaps = 38/286 (13%) Query: 39 TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94 L+ L + E Y+ + + Sbjct: 32 LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKDADGKLDVINADTGDDLLD 91 Query: 95 NTRNNLESYIASF---SDNAKAIFEDFDFSSTIARLEK----AGLLYKICKNFSGIELHP 147 L Y+ SF ++ K+I + + L+ L + + Sbjct: 92 IINKELFPYLKSFKSIDEDVKSI--KYKIGAIFEFLDNCIASGHTLRDVINEIDELNF-N 148 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +S IYE+L++ GS+ + +F TPR +V ++ +P + Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197 Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 T+YDP GT GFL DA H+ + K G+E P ++ + V M++ + Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNKETFFGKEKTPLSYVMGVMNMILHGI 257 Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEK 307 S NI + +TL KD L R++ L+NPPFG K + Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYNIILANPPFGGKEKA 296 >gi|222530437|ref|YP_002574319.1| N-6 DNA methylase [Caldicellulosiruptor bescii DSM 6725] gi|222457284|gb|ACM61546.1| N-6 DNA methylase [Caldicellulosiruptor bescii DSM 6725] Length = 881 Score = 110 bits (276), Expect = 7e-22, Method: Composition-based stats. Identities = 73/483 (15%), Positives = 164/483 (33%), Gaps = 82/483 (16%) Query: 127 LEKAGLLYKICK---NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 L++A L ++ + F V + +YE +R+ + + TPR+V Sbjct: 282 LQQAELFGQVLESFKKFEDEYGSLKYVSKEFKTRLYETFLRQSAGI--KSLGQYFTPRNV 339 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA-------MNHVADCGSHHKI 236 V + ++ DP CG GGF+ + Sbjct: 340 VRAMVKMSKANM-------LPPGTSICDPFCGVGGFILETILINENIWREFEPKNGKIDP 392 Query: 237 PPILVPHGQELEP----ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----- 287 LV + + + T + A MLI + + +++ +K+ F Sbjct: 393 QITLVGYDKGTDEKEDERTIILAKANMLIYLSDFLAKYHSKTYLEE---FAKNAFNKVFK 449 Query: 288 ------------TGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 +++ L+NPP+ K+ +++E+ + G G Sbjct: 450 LLRTNLGTFGLREEEKYDLILTNPPYVTSGVSSIKEIIKRENMDDYYTANGRGT------ 503 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 L + + L+ GG+A +++ L + + ++ + ++E I++LP Sbjct: 504 EALAIEWIIKSLKK----GGQALVIVPDGLLM-------QKNMLDYIKKKCIVEGIISLP 552 Query: 395 TDLFFRTNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 F+ T TY+ IL + E ++ V L +++ + + KR I+ + + Sbjct: 553 PRTFYATPKKTYILILEKKYDENKIQQKPVFLYLVSEIGETRDS---KRFKIDQNDLEEA 609 Query: 453 LDIYVSRE------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 + ++ + + +++++ F ++ + +K L +E Sbjct: 610 VKLFNYFKVNLEPPDNLRCKVMNFEEF--DKLTHWMVDKFWTEDEKQKLGIIEEK----- 662 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT--LKVKASKSFIVAFINAF 564 + + +ILK M + + F ++ K + K F I Sbjct: 663 -EEISAEDFYNILKNMRDYLDTQLRDDFFFRKDFKEKALNINYAVISLDKLFDFPAIKGV 721 Query: 565 GRK 567 K Sbjct: 722 TEK 724 >gi|71275696|ref|ZP_00651981.1| Type I restriction-modification system, M subunit [Xylella fastidiosa Dixon] gi|71897848|ref|ZP_00680074.1| Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] gi|71163587|gb|EAO13304.1| Type I restriction-modification system, M subunit [Xylella fastidiosa Dixon] gi|71732403|gb|EAO34457.1| Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] Length = 265 Score = 110 bits (276), Expect = 7e-22, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 28/205 (13%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGS 168 I + F R L + + FS V + YE+L+R+F Sbjct: 35 VIDIVD-FAIERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFAE 93 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + A + TP ++ L +L P +D CG+GG L Sbjct: 94 GSGQSAGELFTPTEMGFLMAHIL----------HPKPGDACHDYACGSGGLLIKLQIVAH 143 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + ++P GQEL+ + +A+ +I +E + +G T+ F Sbjct: 144 ELDPTSRVPVK--LSGQELQADNYAIAQMNAIIHDMEVEL--------ARGDTMINPKFR 193 Query: 289 G-----KRFHYCLSNPPFGKKWEKD 308 + ++NP + + + D Sbjct: 194 AASGKIRSHDIVVANPMWNQPFTAD 218 >gi|307325247|ref|ZP_07604450.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113] gi|306889051|gb|EFN20034.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113] Length = 573 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 103/296 (34%), Gaps = 40/296 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y L+ R + + + MT + A D S I T+YDP CG G Sbjct: 127 LYADLVERCIASTTRSGGEPMTTLALER-IVAAFTGSADDAAGASDRTIGTVYDPACGIG 185 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A+ P +GQEL P T A+ + + + Sbjct: 186 TLLLTAV-------------PGAHRYGQELNPATAAIAEFRARLDG--------RTATLA 224 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L KD F R + +PP G R+ G+P S+ + Sbjct: 225 CGDSLRKDAFPDLRADLVVCDPPVGV-------PDWGRDDLLLDPRWELGVPPRSESELA 277 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H GGRA +VL SS + IR L+ L+ ++VALP L Sbjct: 278 WVQHCYAHTAP----GGRALLVLPSSVAYRKTGR----RIRAELVRRGLLASVVALPPGL 329 Query: 398 FFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 + +LWIL + +++I+ + G K +Q + Sbjct: 330 MSSHSQPVHLWILRRPAQGDPAPTHIRMIDLST--ADPDGIGMKDCAPTPEQIADV 383 >gi|207109985|ref|ZP_03244147.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori HPKX_438_CA4C1] Length = 138 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 21/157 (13%) Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGG 354 SNPP+ KW D + + RF P L + + F MH+ + L G Sbjct: 1 SNPPYSTKWVGDSNPLLMN-----DERFSPAGVLAPKNAADLAFTMHMLSYLSNS----G 51 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 AAIV L+ G A E++IR +L++ + I+ ++ALP +LFF T+IAT + +L K Sbjct: 52 TAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPENLFFGTSIATCILVLKKNK 108 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 ++ I+A+ + EGKK + + R + Sbjct: 109 KDDTT---LFIDASKEFV---KEGKK-NKLKEHNREK 138 >gi|42794862|gb|AAS45789.1| SLV.6 [Streptomyces lavendulae] Length = 814 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 121/310 (39%), Gaps = 38/310 (12%) Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 +++ N ++ I + + +F TP+ VV L +L + T+YD Sbjct: 240 NQLGGNAFQLFIDAYEKHARLRSREFFTPQGVVRLMASLARTSLG-------RVPHTVYD 292 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP--- 268 P G FL +++ A + G+ +P+ + +++ + Sbjct: 293 PYVRGGEFLAESVTDSASILRSDPELAPVTVFGETTDPDPALLAGLNLVLLGVRPRVRLV 352 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + I+ G L+NP F K + E G + G Sbjct: 353 HKAPWAEIRDG--------EAPAADLVLTNPRFNMKDSAGEACRE--------GTWAYGA 396 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 P + + ++ ++ H L GGRAA+V+ + A + E+ IRR +++ ++E Sbjct: 397 PPVDNDNLAYVQHALASLR----AGGRAALVMPTKA--GNSASAAETAIRRAMVQAGVVE 450 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 ++A+P LF T + +W+L + ++ +V ++A L R ++ +D Sbjct: 451 CVIAMPAKLFSGTAVPVSVWLLRH--PDDPCERVLFLDARHLGVRQ----GPRCVLKEDD 504 Query: 449 RRQILDIYVS 458 + +L Y + Sbjct: 505 VQAVLGTYEA 514 >gi|314933992|ref|ZP_07841357.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87] gi|313654142|gb|EFS17899.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87] Length = 635 Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 130/367 (35%), Gaps = 50/367 (13%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + I DN I D + L L Y K ++ + ++ N Y Sbjct: 254 AKIGELKDNFTFIQNDLTLNRVRDDLGMTPLKYFTIKLNEKLKKNIKHSDMDILGNFYGE 313 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + ++G +TPR + +L L+ ++ + DP CG+GGFL Sbjct: 314 FV-KYGGSDGNSLGIVLTPRHITNLMCELIDINEND----------YVLDPCCGSGGFLI 362 Query: 222 DAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 AMN + + + HG EL+ + + M++R D N+++ Sbjct: 363 AAMNKMLNQTTDESKQAQIKQKQLHGIELQQKLFTIATTNMILRG-------DGKSNLKR 415 Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 F + L NPP+ + K+ + + Sbjct: 416 DDIFHVGKDFYTDKITKALINPPYSQAKTKNLSHLSEIS--------------------- 454 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ + ++ G + A ++ S + + +R +L+N+ +E ++ L D Sbjct: 455 FINETLSLMKS----GAKLAAIVPQSTMI--GKTKNDKNYKREILDNNSLETVITLNKDT 508 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIY 456 F+ + + + + ++ + +V +N +D + ++ G ++ +L++ Sbjct: 509 FYGVGVNPCIAVFTAGIPQDDKKRVNFVNFSDDGYVVRKHVGLVGDGTEKSKKEYLLNVL 568 Query: 457 VSRENGK 463 E+ Sbjct: 569 NDYEDAD 575 >gi|290559136|gb|EFD92499.1| N-6 DNA methylase [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 619 Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats. Identities = 75/450 (16%), Positives = 143/450 (31%), Gaps = 63/450 (14%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L+ E E + EK + L S + N + L + ++ +N Sbjct: 164 LFLKTAEDINEILHAGGIEKDSRAKVVSALLLSLLDDTP-PNINATPKVLVSDINSRVKN 222 Query: 99 NLE--------SYIASFSDNAKAIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDT 149 LE YI ++ F + I L + L Sbjct: 223 TLERESKIEMFDYIRLNLPSSAD--NHIKFKTAVIKTLRELNDL---------NIKSAMN 271 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 V+ YE ++ ++ +TPR + ++ + + Sbjct: 272 SGTDVLGKFYEVFLKYGN--GAKEIGIVLTPRHITQFVAEVMSLRPEDII---------- 319 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 YDP CGTGGFL A + + + + G + ++ + M+ R Sbjct: 320 YDPCCGTGGFLVAAFDEIKRNYKNEVDVFKKNNIFGVDQSDAVVSLAIVNMIFRG----- 374 Query: 269 RRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 D NI +G++L K L + G S+ P E + Sbjct: 375 --DGKNNIIEGNSLVKFLHSRVVGDHLSAFYSDTPSATGKEPVTRVLMN----------P 422 Query: 326 PGLPKISD-GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 P K +D F+ +++ GG +L S + RR LLEN Sbjct: 423 PFPTKKNDEKEYKFVDQALKQMKE----GGLLFSILPYST----TVKASRRNWRRRLLEN 474 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 + + A++ LP DLF+ T + T + ++ V + + + + + Sbjct: 475 NTLLAVMTLPEDLFYPTGVVTLGIFVKKGIPHDKNRNVLWLRTLNDGLLKKKGKRLPNLR 534 Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 + ++I + S + + + + F Sbjct: 535 AKNDLKEIKSLLRSFLLDQETEVKNIPQFQ 564 >gi|293363461|ref|ZP_06610218.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2] gi|292552981|gb|EFF41734.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2] Length = 229 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 22/186 (11%) Query: 287 FTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPKISDGSMLFLMHLAN 344 + F +SNPP+ KWE + + RF L S M F+MH+ N Sbjct: 2 HENFKPFDIIVSNPPYSTKWEGKNNPLNAN-----DERFSVTTLAPNSKADMAFVMHMIN 56 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G AAIV L+ A E +IR +L++ +LI+ IV LP +LFF T+I Sbjct: 57 HLSSS----GSAAIVEFPGVLYRCGA---EKDIREYLVKENLIDTIVKLPNNLFFGTSIY 109 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463 T + +L K E+ + ++A+ + K+ ++ +I++I ++ + Sbjct: 110 TCILLLRKNKNEQG---IFFVDASKEFIK----NGKKNKLSKQNLEKIIEIIRYKKEIED 162 Query: 464 FSRMLD 469 FS ++D Sbjct: 163 FSILID 168 >gi|254383775|ref|ZP_04999123.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces sp. Mg1] gi|194342668|gb|EDX23634.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces sp. Mg1] Length = 737 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 86/263 (32%), Gaps = 44/263 (16%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + + TP + L LL P + DP CG+G L A Sbjct: 163 DEGAASGVYQTPEGLAVLMARLL-----------PAEASRVLDPACGSGTLLAAAA---- 207 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 GQ+ P +L+ E++ I+ G +L D F Sbjct: 208 -------RRDARKLFGQDSLPVQGRRTAVRLLLAAPEAETT------IRVGDSLRDDAFP 254 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 L NPPF D + R+ GLP + + ++ H LE Sbjct: 255 DVTVDAVLCNPPFA-------DRDWGHDELAYDPRWAYGLPPRLESELAWVQHALAHLEP 307 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GG A ++L + F S +R L+ + A+++LP + +I +W Sbjct: 308 ----GGHAVMLLPPALAFR----SSGRRVRAELIRAGALRAVISLPARAAYPLHIGLQIW 359 Query: 409 ILSNRKT-EERRGKVQLINATDL 430 + + R V ++ Sbjct: 360 VFQRPEPGGTDRTTVLFVDGEGE 382 >gi|260914376|ref|ZP_05920845.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631477|gb|EEX49659.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 667 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 101/504 (20%), Positives = 161/504 (31%), Gaps = 127/504 (25%) Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139 FY +S + G + + + A IFE D +R + + Sbjct: 220 FYVSSTEKGNLDGQNACKERINNIFAGVKRQFSQIFEANDEIKLSSR--------SLVEI 271 Query: 140 FSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 S ++ + D + YE ++ S + F TPR+V+H+A ++ Sbjct: 272 VSELQGYSFLATDVDLKGRAYEEIVG---SNLKGDRGQFFTPRNVMHMAVKMI------- 321 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHV------------------------ADCGSHH 234 +P + + DP CGTGGFL AMN V Sbjct: 322 ---NPKLDEKILDPACGTGGFLVTAMNMVIEQLKQDWAKDLGADEHQWGDDEKKALQQRI 378 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291 G ++ PE M++ D S NI + +L Sbjct: 379 SEAAASSFFGFDIAPELVKATKMNMVMNN-------DGSGNILRNDSLLPPHLWESDFKE 431 Query: 292 ---------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 F ++NPPFG K ++ + +++ G G PK Sbjct: 432 NLAKALGISASQFKSHQDIGLFDVIITNPPFGSKITIQQEYMLNQYEIGH----GWENPK 487 Query: 331 ISDG--------------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G LF+ L+ GR AIVL + L G Sbjct: 488 KKGGTEWLKKSVTSAAPPEQLFVERCLQLLKPA----GRMAIVLPDNIL----GAPGLGY 539 Query: 377 IRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR----KTEERRGKVQLINATDLW 431 IR+WLL+ I A V L ++ F T + T + IL + K + GK+Q N + Sbjct: 540 IRQWLLKEAKIIASVDLDSNTFQPHTGVQTSILILQKKTEAEKKADLEGKMQPYN-IFMA 598 Query: 432 TSIRNEGKKR---RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 + KR + D+ +IL + + S + + R Sbjct: 599 VVDKVGHDKRGVNTYLRDENGDEIL------QEVEESSA---------DVSGEKTKRFDK 643 Query: 489 ILDKTGLARLEADITWRKLSPLHQ 512 I D LA E W+K + Sbjct: 644 IPDDQTLAVPEVFARWKKEEGIEW 667 >gi|237747527|ref|ZP_04578007.1| RM-CspCI protein [Oxalobacter formigenes OXCC13] gi|229378889|gb|EEO28980.1| RM-CspCI protein [Oxalobacter formigenes OXCC13] Length = 682 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 63/348 (18%), Positives = 115/348 (33%), Gaps = 62/348 (17%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNI 158 Y S + + F+F + L G L K+ + E+ P + ++S+ Sbjct: 311 EYANIPSTRVHEMQQAFNFIKSHTALIDEGYLIKLVADIQK-EVRPFIKSNKYFDIVSHC 369 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 Y ++ ++ + +TP + L + D++ + D CGT G Sbjct: 370 YVEFLKYANNDSA--LGIVLTPAHITELFCDIAGVTKDSV----------VLDNCCGTSG 417 Query: 219 FLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 FL AM + + G E + + V+ M+I D Sbjct: 418 FLIAAMQKMVALAKGDSKEIENIKKERLIGIEYQDHIFTLAVSNMIIHG-------DGKT 470 Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 NI +G K + L NPP+ D+ + + Sbjct: 471 NIIKGDCFKKIQDAAAYKPTVGLLNPPYNDVTGIDELEFVENN----------------- 513 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 L G AIV L+ G +EI++ LLE +EA++++ Sbjct: 514 ------------LSAIQQNGIVVAIVPMRCALYQDGRG---AEIKKRLLEKHTLEAVMSM 558 Query: 394 PTDLFFRTNIATYLWILSNRKTEER-RGKVQL-INATDLWTSIRNEGK 439 P DLF+ + T + + + R K D + ++ G+ Sbjct: 559 PDDLFYPVGVVTCVMVFRAHVPHQSGRRKTWFGYWKDDGFLKAKHRGR 606 >gi|290579889|ref|YP_003484281.1| type I restriction-modification system methyltransferase subunit [Streptococcus mutans NN2025] gi|254996788|dbj|BAH87389.1| type I restriction-modification system methyltransferase subunit [Streptococcus mutans NN2025] Length = 661 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 62/386 (16%), Positives = 127/386 (32%), Gaps = 65/386 (16%) Query: 95 NTRNNLESYIASFSDNAKA--IFEDFDF-SSTIARLEKAGLLYKI-CKNFSGI------- 143 + NL+ + S K + F I EK L K K+F+ Sbjct: 240 AIKANLQRA--NVSPEVKKDKLLSQFAIIRDDIKINEKNSTLGKTPIKHFTEFLYKSIYQ 297 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 L ++ + + Y + + + +TP+ + L L+ Sbjct: 298 SLRYNSSAEDYLGRFYGEFMS-YSGGDGQNLGIVLTPKHITELFCDLV----------DL 346 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 ++DPTCGT GFL AM+ + D + G E + + M+ Sbjct: 347 KPTDKVFDPTCGTAGFLIAAMHDMLTKADSDYQREQIRKHQLFGIEEQSYMFTIATTNMI 406 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +R D N++ L ++ K+ + + NPP+ + + + E Sbjct: 407 LRG-------DGKSNLENQDFLRQNPSKLQLKQCNVGMMNPPYSMGSKTNTELYEINFTE 459 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 L G +A +++ S F G E E + Sbjct: 460 --------------------------HLLNSLVEGAKAVVIVPQST-FTG-KTKFEKEAK 491 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNE 437 + +L + +E ++ L + F+ + + + + + IN D + ++ Sbjct: 492 QNILNHHTLEGVITLNKNTFYGVGTNPCIAVFTAGIPHHPERECKFINFENDGFEVSKHI 551 Query: 438 GKKRRIINDDQRRQILDIYVSRENGK 463 G D+++ +LD++ R + Sbjct: 552 GLVETATAKDKKQHLLDVWFDRTEAE 577 >gi|157804105|ref|YP_001492654.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel] gi|157785368|gb|ABV73869.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel] Length = 869 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 83/562 (14%), Positives = 179/562 (31%), Gaps = 70/562 (12%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + E + + + + + F++T Y L ++ ++ Sbjct: 200 DAFWEFVKLFSLKMDNDKYINKKLMNNQEISMDDIFFST-NYIDKNLSLFPKQDPIKKIF 258 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHL 162 +F + + + + E+ L K + + + + + I+E Sbjct: 259 NNFREELEILIIKEGKKRIFTKGEELNLSLDTIKYVVKRLEKFDLNDIDEDLNGRIFEVF 318 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R + + TPRDV+ L P + D CG+GGFL + Sbjct: 319 LR--AAVRGRELGQYFTPRDVIKFMVKL----------AGPNENTKILDACCGSGGFLIE 366 Query: 223 AMNHVADCGSHH----------KIPPILVPHGQELEPETHAVCVAGMLIR----RLESDP 268 + ++ + + K + G + E + + M + Sbjct: 367 SFAYIMNNIPKNLSKSKHEEIVKNIKENLIFGVDKEEKVVRLARINMYVHKDSSSKIFRL 426 Query: 269 RRDLSKNIQQGSTLSKDLFTGKR----------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + L KN+ TL + + F L+NPPF ++ K Sbjct: 427 QDALDKNLTIDPTLPDEEQQQYKDAKEVLINGAFQIVLTNPPFSSNYKMKDKDTNKSDTR 486 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 G + ++LF+ + L GG+ V+ S L S R Sbjct: 487 ILKNYTVVGKKNSINSNILFIERYYDLL----ELGGKLITVIDDSLLNAKNQAS----FR 538 Query: 379 RWLLENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTEE-RRGKVQLINATDLWTSIR 435 W+L+ I+A+++LP + F T I T + L ++ + + K+ + ++ Sbjct: 539 EWILDRFHIKAVISLPFNAFVNASTTIKTSIIYLEKKEYKSISKNKIFMAICNNVGHDDS 598 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTG 494 + I+ +S+ LD + F I + + + Sbjct: 599 G-----NDTPERNNLNIV----------YSKWLDFNKDFSLPDIIIENQNKSELLTCSLQ 643 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 + ++ K F+ L+ + ++I + +K S + K++ K + Sbjct: 644 IFSIDYSKMSSKRFDAF--FYSPELQNIYKKINSLDKNKFIIKTSKEFTLQKSVNAKYVQ 701 Query: 555 SFIVAFIN--AFGRKDPRADPV 574 + N G + + D V Sbjct: 702 NNFNTIFNYIEVGSCNKKGDIV 723 >gi|148654897|ref|YP_001275102.1| N-6 DNA methylase [Roseiflexus sp. RS-1] gi|148567007|gb|ABQ89152.1| N-6 DNA methylase [Roseiflexus sp. RS-1] Length = 725 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 64/254 (25%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F + + TPR +V L TAL + + + D CG+GG L + Sbjct: 86 FRLDNMRPGGQYPTPRHIVRLMTAL-----------AETTKKVVADFACGSGGLLIHS-- 132 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 G ++ PE + A + + + +I++G+ L Sbjct: 133 ------------QGSSLVGVDISPEWARIARANLQLH--------EKQGDIREGNALRV- 171 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + +RF + NPPFG+K D + + N Sbjct: 172 AKSDERFERIVMNPPFGEKIASDFGTRSETAL---------------------INLALNH 210 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNI 403 L GRAA++ LF+ S E ++R+ L+++ +EAI+ LP D F + T + Sbjct: 211 LAT----NGRAALLAPGGVLFSN--SSAEEKLRQRLVDDVTLEAIITLPEDAFQPYST-L 263 Query: 404 ATYLWILSNRKTEE 417 T+L ++ N+K E Sbjct: 264 TTHLLLIENKKPVE 277 >gi|119513482|ref|ZP_01632506.1| putative type I restriction-modification system, methyltransferase subunit [Nodularia spumigena CCY9414] gi|119461862|gb|EAW42875.1| putative type I restriction-modification system, methyltransferase subunit [Nodularia spumigena CCY9414] Length = 108 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62 + +FIW A+D L + + VILP +LRRL+C LE T++ V E+ Sbjct: 6 QNKIVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLESTKADVLEEVRFQREEA 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 +D + +GY FYN SE++L L + Sbjct: 66 KFEVLDPSGLQEASGYVFYNVSEWTLKKLLN 96 >gi|291448530|ref|ZP_06587920.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998] gi|291351477|gb|EFE78381.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998] Length = 696 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 122/386 (31%), Gaps = 80/386 (20%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + N R + + + ++ K + F + I ++A L I + +L Sbjct: 241 LKEMFDANGRAAISTRVKGLFEDVKTEYKDVFKPTDEITLSDRA--LSFIVSELAPYDLI 298 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 Y+ L+ + + + TPR V+L +L P Sbjct: 299 --GTDVDAKGIAYQELVG---TNLRGDRGQYFTPRGAVNLMVEIL----------DPKED 343 Query: 207 RTLYDPTCGTGGFLTDAMNHVA--------------------DCGSHHKIPPILVPHGQE 246 T+ DPTCGTGGFL + H+ G K G + Sbjct: 344 ETVLDPTCGTGGFLQATLKHLHHTWKKEAGTLGFPDTEEERERYGDKLKEFADEHLFGSD 403 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--------------FTGKRF 292 +P ++ + N+ +L+ Sbjct: 404 FDPFLVRATTMAIM-------TLAQTTGNVFHMDSLAFPQGHLSGVEAAKKRIPLDKPTV 456 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPG---------LPKISDGSMLFLM 340 L+NPPFG ++V +NG GR +P LF+ Sbjct: 457 DVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTSVPSSMAPEQLFIQ 516 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-- 398 ++ GGR IVL + L N + IRR++L N + A V LP + F Sbjct: 517 RAIEWVKP----GGRIGIVLPNGILSNPGPT--DEAIRRYILRNCWVLASVELPVETFVV 570 Query: 399 -FRTNIATYLWILSNRKTEERRGKVQ 423 NI T L L + +E + Sbjct: 571 DANVNILTTLLFLKRKTRQEIQNHDL 596 >gi|307566382|ref|ZP_07628821.1| conserved domain protein [Prevotella amnii CRIS 21A-A] gi|307344959|gb|EFN90357.1| conserved domain protein [Prevotella amnii CRIS 21A-A] Length = 237 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 40/239 (16%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-------------- 49 T + L +W A L G DF +L F L+ L Sbjct: 2 TTENKDELGKTLWDIANSLRGAMMADDFRDYMLSFLFLKYLSDNYVAFAKKELGGDYPVI 61 Query: 50 PTRSAV-------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------T 96 + A + + +IDL + Y ++ Sbjct: 62 DIKEAYAVGVNSPLQLWYENNPQDIDLFEAQMRKKIHYVIKPHYIWDSIAEEARTQSDSL 121 Query: 97 RNNLE---SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELH 146 NLE YI SF + K +F + + +S +L E+ LL K+ Sbjct: 122 LENLEKGFKYIEEESFDTSFKGLFSEINLNS--EKLGKNYAERNTLLAKVINKIKEGISE 179 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 DT + + YE+LI +F + + A +F TP+ + + + ++ Sbjct: 180 LDTTT-DALGDAYEYLIGQFAANSGQKAGEFYTPQGISSILSKIVTLDCQDPKSGKKKK 237 >gi|191639034|ref|YP_001988200.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus casei BL23] gi|190713336|emb|CAQ67342.1| Type I restriction-modification system methyltransferase subunit [Lactobacillus casei BL23] gi|327383094|gb|AEA54570.1| Type I restriction-modification system, M subunit [Lactobacillus casei LC2W] gi|327386278|gb|AEA57752.1| Type I restriction-modification system, M subunit [Lactobacillus casei BD-II] Length = 235 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 35/205 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52 M + T +L +W +A+ L +++ +L + L LE Sbjct: 1 MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58 Query: 53 SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107 + + + A+ ++ + V+ Y+ + + L + + Sbjct: 59 TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116 Query: 108 SDNAKAI----------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 S + + I FED D S +L ++ ++ + K S ++L + Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYS--RKLGATPQKQNQVISDVMKQISTLDLVGQN-TN 173 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDF 177 ++ + YE+LI +F S+ ++ F Sbjct: 174 DILGDAYEYLIGQFASDPAKMLVSF 198 >gi|239945070|ref|ZP_04697007.1| type I restriction-modification system, M subunit, putative [Streptomyces roseosporus NRRL 15998] gi|239991532|ref|ZP_04712196.1| type I restriction-modification system, M subunit, putative [Streptomyces roseosporus NRRL 11379] Length = 718 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 122/386 (31%), Gaps = 80/386 (20%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + N R + + + ++ K + F + I ++A L I + +L Sbjct: 263 LKEMFDANGRAAISTRVKGLFEDVKTEYKDVFKPTDEITLSDRA--LSFIVSELAPYDLI 320 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 Y+ L+ + + + TPR V+L +L P Sbjct: 321 --GTDVDAKGIAYQELVG---TNLRGDRGQYFTPRGAVNLMVEIL----------DPKED 365 Query: 207 RTLYDPTCGTGGFLTDAMNHVA--------------------DCGSHHKIPPILVPHGQE 246 T+ DPTCGTGGFL + H+ G K G + Sbjct: 366 ETVLDPTCGTGGFLQATLKHLHHTWKKEAGTLGFPDTEEERERYGDKLKEFADEHLFGSD 425 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--------------FTGKRF 292 +P ++ + N+ +L+ Sbjct: 426 FDPFLVRATTMAIM-------TLAQTTGNVFHMDSLAFPQGHLSGVEAAKKRIPLDKPTV 478 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPG---------LPKISDGSMLFLM 340 L+NPPFG ++V +NG GR +P LF+ Sbjct: 479 DVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTSVPSSMAPEQLFIQ 538 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-- 398 ++ GGR IVL + L N + IRR++L N + A V LP + F Sbjct: 539 RAIEWVKP----GGRIGIVLPNGILSNPGPT--DEAIRRYILRNCWVLASVELPVETFVV 592 Query: 399 -FRTNIATYLWILSNRKTEERRGKVQ 423 NI T L L + +E + Sbjct: 593 DANVNILTTLLFLKRKTRQEIQNHDL 618 >gi|229827314|ref|ZP_04453383.1| hypothetical protein GCWU000182_02700 [Abiotrophia defectiva ATCC 49176] gi|229788932|gb|EEP25046.1| hypothetical protein GCWU000182_02700 [Abiotrophia defectiva ATCC 49176] Length = 293 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 95/272 (34%), Gaps = 43/272 (15%) Query: 216 TGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 T GFL A ++ + + + +G +++ + M+ +++ Sbjct: 19 TSGFLVAAGEYLKENRKEEIFYNRQKKEHYMNHMFYGYDMDRTMLRIDAMNMMTHGIDNP 78 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 I+ +LS ++ L+NPPF + D + + Sbjct: 79 F-------IEYRDSLSDRNSDKDKYSLVLANPPFKGSLDADSVSGDL-----------LK 120 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + K +LFL G R A ++ LF + +IR+ ++EN + Sbjct: 121 VCKTKKTELLFLTLFIRM----HKIGERCACIVPDGVLF--GSSKAHKDIRKEIVENQRL 174 Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 A++++P+ +F T ++T + I + + + T + KR + D Sbjct: 175 VAVISMPSGVFKLYTGVSTAILIFTKT-EHGGTDNLWFYDMTADG---FSLDDKRSPVAD 230 Query: 447 DQRRQILDIYV------SRENGKFSRMLDYRT 472 + I+ + R+ S M+ + Sbjct: 231 NDIPDIIQRFKNLDKESDRKRTDKSFMVPKKE 262 >gi|325677722|ref|ZP_08157372.1| hypothetical protein CUS_4267 [Ruminococcus albus 8] gi|324110583|gb|EGC04749.1| hypothetical protein CUS_4267 [Ruminococcus albus 8] Length = 114 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68 ++ FIW A L G ++ + VI+P ++RR ECALE T+ AV E+Y Sbjct: 18 STEVGFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYK--KNPAYP 75 Query: 69 LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIA 105 ++ +V+ Y F+NTSEY+L+ L + N +YI Sbjct: 76 AKAMCRVSRYQFFNTSEYTLAELVNDPDHLAANFRNYIE 114 >gi|1771599|emb|CAA64185.1| hypothetical protein [Staphylococcus phage phi-42] Length = 639 Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 126/367 (34%), Gaps = 51/367 (13%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + I DN I D + L L Y K ++ + ++ N Y Sbjct: 258 AKIGELKDNFTFIQNDLTLNRVREDLGMTPLKYFTIKLNEKLKKNIKHSDMDILGNFYGE 317 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + ++G +TPR + +L L+ + + DP CG+GGFL Sbjct: 318 FV-KYGGNDGNSLGIVLTPRHITNLMCELIDINKND----------YVLDPCCGSGGFLI 366 Query: 222 DAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 AMN + + HG EL+ + + M++R D N+++ Sbjct: 367 AAMNKMLHETEDEEKKTHIKQEQLHGIELQQKLFTIATTNMILRG-------DGKSNLKR 419 Query: 279 GSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + + L NPP+ + K+ + + Sbjct: 420 DDIFHIEKELYANKITKALINPPYSQAKTKNLSHLSEIS--------------------- 458 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ + ++ G + A ++ S + +R +LEN ++ ++ L D Sbjct: 459 FINETLSLMK----IGAKLAAIVPQSTMIGKTKN---DNYKRDILENHSLDTVITLNKDT 511 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIY 456 F+ + + + + ++ + +V IN +D + ++ G ++ +L++ Sbjct: 512 FYGVGVNPCIAVFTAGIPQDEKKRVNFINFSDDGYIVRKHIGLVGDGTEKSKKEYLLNVL 571 Query: 457 VSRENGK 463 E+ Sbjct: 572 NDYEDAD 578 >gi|84626048|gb|ABC59617.1| RM-CspCI [Citrobacter sp. 2144] Length = 632 Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 74/450 (16%), Positives = 142/450 (31%), Gaps = 84/450 (18%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRN 98 +R L +R +++ + E + V+G NT + L + + + Sbjct: 171 KRHSDLLAFSRE--LHEFIWTKAKISEEEKPLLVSGTLIALMNNTFIKTFDALPAEDVQE 228 Query: 99 NLESYIASFSDNA------KA--------IFEDFDFSSTIARLEK---AGLLYKICKNFS 141 + I D A K I + + ++ K G+ +I + Sbjct: 229 AWLTAIKKELDKASIPQAKKDTMLQPYTTIAVNPNLGKPDSKTAKEYPDGVFKEIITRIA 288 Query: 142 GIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 V+ Y + ++ + + +TPR V L Sbjct: 289 DNVWPYINVFHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHVAELF----------SL 337 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCV 256 + + D GTGGFL AM H+ G E P+ A+ Sbjct: 338 IANVNPKSKVLDICAGTGGFLISAMQHMLKKAVTDKERNDIKQNRLIGIENNPKMFALAA 397 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 + M++R D N+ Q S + + + NPP+ + Sbjct: 398 SNMILRG-------DGKANLHQASCFDNAVIAAVQKMKPNVGMLNPPYSQS--------- 441 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 SD + L + L+ GG AIV SS + Sbjct: 442 -----------------KSDAELHELYFVKQMLDTLTPGGVGIAIVPMSSAISPN----- 479 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-RRGKVQL-INATDLW 431 +R L++ ++A++++P +LF+ T + + E K D + Sbjct: 480 --PMREELMKYHSLDAVMSMPQELFYPVGTVTCVMVWIAGVPHEQMSKKTWFGYWRDDGF 537 Query: 432 TSIRNEGK-KRRIINDDQRRQILDIYVSRE 460 +++G+ D R + +++Y +RE Sbjct: 538 VKTKHKGRIDMNGTWPDIRDRWIEMYRNRE 567 >gi|328765965|gb|EGF76048.1| hypothetical protein BATDEDRAFT_93094 [Batrachochytrium dendrobatidis JAM81] Length = 153 Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 20/166 (12%) Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 +Y P CG+G ++ + + K + +GQE T+ + + Sbjct: 1 MIEPYKGKIYGPACGSGEMFVQSVKFIEAHHGNTK---DISIYGQEYTNTTYKMAKMNLA 57 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 IR + ++ +T+SKD + + ++NPPF + ++ + Sbjct: 58 IRGISANLGNMAE------NTVSKDQHKDLKVDFIMANPPFN------QKQWRAANELHD 105 Query: 321 LGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 R+ G +P + + +++++ +KL + G A +L++ L Sbjct: 106 DPRWAGYDVPPTGNANYAWILNIVSKL----SENGVAGFLLANGAL 147 >gi|167644296|ref|YP_001681959.1| N-6 DNA methylase [Caulobacter sp. K31] gi|167346726|gb|ABZ69461.1| N-6 DNA methylase [Caulobacter sp. K31] Length = 657 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 71/368 (19%), Positives = 127/368 (34%), Gaps = 90/368 (24%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V + YE ++ S + +F TPR++ ++A ++L P +T+ Sbjct: 290 DVDVKGHAYEEIVG---SNLRGDRGEFFTPRNICNMAVSML----------DPSEGQTIL 336 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--------------------ELEPE 250 DP CGTGGFL AMNHV + ++ +G+ + PE Sbjct: 337 DPACGTGGFLISAMNHVIEKIRVAELEKWKGDYGRADPKIAARISKFAGACIVGLDFNPE 396 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---------FHYCLSNPPF 301 M++ D + + Q ++L + +NPPF Sbjct: 397 LVKATKMNMVMNN-------DGAGGLYQANSLESPATWEEALRDRKLIGSVDLIFTNPPF 449 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGL-------------PKISDGSMLFLMHLANKLEL 348 G K D A+ +++ G + + P +LF+ L+ Sbjct: 450 GSKIPVDDPAILEKYDLGHSWSYNEEIDSWTMNESIQKSQPP----EILFIERCVKFLKP 505 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407 G GR A+VL L G +R W+L+N + A + L D F ++ T + Sbjct: 506 ---GTGRVAMVLPDGIL----GSPGLGYVREWILKNTWVLASIDLHPDTFQPNVSVQTSV 558 Query: 408 WILSNRKTE----------ERRGKVQLINATDLWTSIRNEG-----KKRRIINDDQRRQI 452 +L + E + V + A + R +K I ++ + Sbjct: 559 LVLQRKTDEQIALEDAAGRKNDYNVFMAVANHIGHDKRGNKTYVRDRKGNEIVEE-IEED 617 Query: 453 LDIYVSRE 460 Y+ + Sbjct: 618 TKEYIDGQ 625 >gi|168333674|ref|ZP_02691929.1| type I restriction-modification system, M subunit, putative [Epulopiscium sp. 'N.t. morphotype B'] Length = 604 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 66/358 (18%), Positives = 129/358 (36%), Gaps = 56/358 (15%) Query: 111 AKAIFEDFDFSST----IARLEKAGLLYKICKN-FSGIE--LHPDTVPDRVMSNIYEHLI 163 K IF + I L K L + K F+ I T ++ ++ + Sbjct: 56 LKEIFHSVAMNEFLRLPIQYLSKTNLNNETIKKIFTDINHWKLNKTQYTEAINYVFTII- 114 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + TP + L LL + T Y T G + A Sbjct: 115 -------ERTLPIYSTPSYINELLIKLL-----------EPIGGTFYSGTLGIASTMIMA 156 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + A G+ + GQE+ + +A+ V + + + S +I L+ Sbjct: 157 YQYAAYLGNTLE------IXGQEINLQIYALAVIRLYVNGI-------SSHHILASDMLT 203 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F Y +PP +W+ + + + G P+++ Sbjct: 204 SPIINN--FDYIAIHPPANIEWKDKQSQIIDRPDL-----YSFGFPQVTTSDW----LFL 252 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + N G+A ++ LF E ++R ++ D IEAI+ LP + ++ Sbjct: 253 SLALKLLNKTGKAVVLTPVGSLFRTGM---EEKLRTRIIYCDYIEAIIELPERIVTNSST 309 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + I + K+ + + +Q I+AT L+ S + +R ++ D +I++IY S+ + Sbjct: 310 NFAIIIFNKNKSIKLKNSIQFIDATXLYESQKRA---KRALSIDNINEIVNIYKSQTD 364 >gi|86141515|ref|ZP_01060061.1| putative DNA restriction-modification system, DNA methylase [Leeuwenhoekiella blandensis MED217] gi|85832074|gb|EAQ50529.1| putative DNA restriction-modification system, DNA methylase [Leeuwenhoekiella blandensis MED217] Length = 816 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 111/310 (35%), Gaps = 56/310 (18%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L ++ + + + + DR I++ L+ R + + +F+ P ++ + Sbjct: 92 ERLNEVLHQLT---MFNNEILDRYFDEIFDDLLFRLADNQGKYSGEFLLPNEISKFVVEI 148 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 P+ ++++P G F T +GQE+ Sbjct: 149 ADMPN----------WASVFNPFAGLASFATHL-------------NKNQNYYGQEIVSS 185 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 T A+ + ++ + N + ++ F +SNPPF K Sbjct: 186 TWALGMLRLM------RLHKHTQINYRVEDSIHN-WPGTNNFDLIISNPPFNYKI----- 233 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + GR M ++ K N G+ A ++S LF G Sbjct: 234 ---DPYIAHYFGRKK----------MTAETYVICKGLESINFDGKVACIVSQGMLFRG-- 278 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 S + +R L+E LIE IV+LP+ + T I + IL+ +K R +++I+A+ Sbjct: 279 -SDDQRLRESLVEQGLIETIVSLPSGMLKHTGIPICIMILTRKKNINRT--IKMIDASSF 335 Query: 431 WTSIRNEGKK 440 S K+ Sbjct: 336 VESKGKREKR 345 >gi|327390239|gb|EGE88582.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375] gi|332202745|gb|EGJ16814.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317] Length = 284 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 36/219 (16%) Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEH 161 +FS + F + A L+KA I F ++ D + +IYE+ Sbjct: 70 AFSRYMREAI--FQI-NKPATLQKA---ISILDVFPTRGLDVDFDNDKQSITDIGDIYEY 123 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + + F TPR ++ + L+ + DP G+ GFL Sbjct: 124 LLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLV 171 Query: 222 DAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 A ++ + HG + + + M++ +E + Sbjct: 172 SASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NP 224 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 I +LS+D ++ L+NPPF + + + + Sbjct: 225 QISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSND 263 >gi|225164186|ref|ZP_03726462.1| N-6 DNA methylase [Opitutaceae bacterium TAV2] gi|224801195|gb|EEG19515.1| N-6 DNA methylase [Opitutaceae bacterium TAV2] Length = 651 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 81/366 (22%), Positives = 126/366 (34%), Gaps = 82/366 (22%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 V YE ++ S + +F TPR++ +A A+L PG + Sbjct: 283 ESDVDVKGRAYEEIVG---SNLRGDRGEFFTPRNICQMAIAML----------DPGEHQL 329 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------------------ILVPHGQELE 248 + DP CGTGGFL AMNHV + ++ G + Sbjct: 330 ILDPCCGTGGFLITAMNHVIEKIRDAEVKKWKGKPERALEPIRARIQKFASKFIAGIDFN 389 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---------KRFHYCLSNP 299 PE M++ D + + Q ++L + +NP Sbjct: 390 PELVKASKMNMVMNN-------DGAGGLFQANSLENPAVWSSDLRARNLMGKVDLLFTNP 442 Query: 300 PFGKKWEKDKDAVEKEHKNGEL-------GRF--GPGLPKISDGSMLFLMHLANKLELPP 350 PFG K A+ +++ G R+ G K +LF+ L Sbjct: 443 PFGSKIPITDPAILEQYDLGHAWSYDKTSDRWMMQAGTVKSQPPEILFIERCVKFLRS-- 500 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GGR AIVL L G +R W+L + I A + L D F +I T + + Sbjct: 501 --GGRCAIVLPDGIL----GSPGLGYVREWILRHARILASIDLHPDTFQPLVSIQTSVLV 554 Query: 410 LSNRKT-----EERRGK-----VQLINATDLWTSIRNEGKK---RRIINDDQRRQILDIY 456 L + E+ GK V + A + R G K R + R+++ Sbjct: 555 LERKDQQLVAIEQAAGKLNDYCVFMAVANHIGHDKR--GNKTYVRNKDGSELVRELVRSV 612 Query: 457 VSRENG 462 + ENG Sbjct: 613 LEYENG 618 >gi|319757929|gb|ADV69871.1| putative HsdM [Streptococcus suis JS14] Length = 240 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 20/189 (10%) Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLAN 344 Y +SNPPF + + +D V E RF G+PKI + LF+ H+ + Sbjct: 1 MDYIVSNPPFKLDFSEWRDQV--ESLPNSSERFFAGVPKIPNKKKESMAIYQLFIQHIIH 58 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G+AAIVL + F + +IR+ L++ ++ +V++P+++F T Sbjct: 59 SLKED----GQAAIVLPTG--FITAQSGIDKKIRQHLVDEKMLAGVVSMPSNIFATTGTN 112 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463 + + + + V LI+A++L T ++ ++ +++ D+ QI+ ++++E + Sbjct: 113 VSILFIDKK----NKDDVVLIDASNLGTKVKEGKNQKTVLSPDEESQIIQTFINKEVVED 168 Query: 464 FSRMLDYRT 472 FS + Y Sbjct: 169 FSVKVSYEE 177 >gi|289811268|ref|ZP_06541897.1| DNA methylase M, host modification [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 202 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 39/203 (19%) Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I+ G+TL D + +NPPFG + + S+ Sbjct: 10 IRLGNTLGSDGENLPQADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQ 55 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + F+ H+ L GGRAA+V+ + LF EIRR L++ + I+ LPT Sbjct: 56 LCFMQHIIETLRP----GGRAAVVVPDNVLF----DRVGLEIRRDLMDKCHLHTILRLPT 107 Query: 396 DLFFRTNIATYLWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 +F+ + T + + + ++ V + + T++ G KR + Sbjct: 108 GIFYAQGVKTNVLFFTKGTVANPTQDKDCTDDVWVYDLR---TNMPRFG-KRTPFTEQYL 163 Query: 450 RQILDIYVS-------RENGKFS 465 + +Y R G++S Sbjct: 164 QPFETVYGEDPHGLSPRAEGEWS 186 >gi|149391960|emb|CAL68657.1| restriction-modification enzyme [Pseudomonas putida] Length = 1289 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 81/468 (17%), Positives = 157/468 (33%), Gaps = 41/468 (8%) Query: 112 KAIFEDFDF---SSTIARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + F + DF RL + A +L K+ + + I L ++ + +++E + + Sbjct: 355 QKFFTNNDFSFIDVHNERLFYQNADVLLKLLQMWQDIRLTNANGHNQFLGDMFEGFLDQ- 413 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 V + F TP + L+ P ++L +++P + D CG G FLT+ Sbjct: 414 --GVKQSEGQFFTPMPICRFI--LMSLPLESLVRDNPTPPMAI-DYACGAGHFLTELALQ 468 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ--QGSTL-- 282 + HK + + + L + + + IQ G L Sbjct: 469 LQPLLEQHKPQANPAEYHKS----MVGIEKEYRLSKVAKVSAFMYGQQGIQVCYGDGLVN 524 Query: 283 SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSML- 337 S + F R F ++NPP+ + + E+ R L +D Sbjct: 525 SHEAFPDIRDGHFDLLVANPPYSVRGFLETLPEEE--------RKAYSLADTINDAETAN 576 Query: 338 -FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 + + GG AAI+L S+ L NG S + R LL+ I AI + Sbjct: 577 SIETFFVERAKQLLKSGGVAAIILPSAILSNGG--STYTRAREILLQYFDIVAIAEFGSG 634 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 F +T T L + T+ + + + +K+ D + + Sbjct: 635 TFGKTGTNTVTLFLRRKPTQPDTAEHCRERVEEWFKGCAASKRKQATYKDGHLIEQYCAH 694 Query: 457 VSRENGKFSRMLDYRTFGYRRIKV-LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 ++ + +L G + + +P F L L ++ L+ Q+ Sbjct: 695 INVPLADYQSLLRGEAEGSWKQQEHFQPYHDKFDKSTE-LVNLRKQKKFKALNKAEQAA- 752 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTL--KVKASKSFIVAFI 561 +I K + + + + L + + I F+ Sbjct: 753 -EIAKRYLGYVQTIERDKLYHFCLASDQTNPVLIIRSPSGTKEIKQFL 799 >gi|67459800|ref|YP_247423.1| Type I restriction-modification system methyltransferase subunit [Rickettsia felis URRWXCal2] gi|67459869|ref|YP_247491.1| Type I restriction-modification system methyltransferase subunit [Rickettsia felis URRWXCal2] gi|67005333|gb|AAY62258.1| Type I restriction-modification system methyltransferase subunit [Rickettsia felis URRWXCal2] gi|67005402|gb|AAY62326.1| Type I restriction-modification system methyltransferase subunit [Rickettsia felis URRWXCal2] Length = 332 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 91/264 (34%), Gaps = 58/264 (21%) Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I L K +L I +LH + + +E+ +R +G ++ TPR + Sbjct: 4 IETLVKPSILNTIVAKLD--DLHLSATHSDIKGDAFEYFLRNYG-GADTDFGEYFTPRHI 60 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-----GSHHKIPP 238 V LL P +YDP CGTGG L + H+ D + + Sbjct: 61 VTALVNLL----------DPKFGEKVYDPFCGTGGMLITSYKHIYDNLSLRTPENIQRLK 110 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-----------SKDLF 287 +G E+ + + M++ D NI + ++ KD F Sbjct: 111 KQTVYGGEITK-MYRIAKMNMILAG-------DGHSNIVRQNSYGTPDTIKQIDVIKDGF 162 Query: 288 TGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 K ++ +SN PFG+K + + + G R + ++H Sbjct: 163 VTKENIKIKYDVVISNMPFGRKMKTEHAGL-----YGFNTR---------SAEITGVLHC 208 Query: 343 ANKLELPPNGGGRAAIVLSSSPLF 366 N L N R +++ LF Sbjct: 209 LNSLNNNENA--RLGLIVPEGILF 230 >gi|332366262|gb|EGJ44017.1| restriction enzyme BgcI subunit alpha [Streptococcus sanguinis SK355] Length = 654 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 74/491 (15%), Positives = 156/491 (31%), Gaps = 120/491 (24%) Query: 39 TLLRRLECAL--EPTRSAVREKYLA---FGGSNIDLESFVKVAGYSFYNTSEY-SLSTLG 92 +++RL L E + E+Y G ++ E + ++ + + LG Sbjct: 147 LVIKRLSDVLSFENFKEENIEEYYKVSVLGELSLYQEELKNINEIAYSIHEDLRNYGNLG 206 Query: 93 STN-------------------------------------TRNNLESYIASFSDNAKAIF 115 + N + L + S ++ Sbjct: 207 ADNKATVVSAILLALRHGLTANQLTGGVDSSSDGNTIFRAIEDELNNLYQVRSKKIGSLL 266 Query: 116 EDFDF-------SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRF 166 + F F ++ + L L+ S H P ++ + Y + ++ Sbjct: 267 DTFRFITTDVRLNTKLTELGNRTPLWYFTDRLSNEVYHRVVGGTPFDILGSFYSEFV-KY 325 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 G +TP ++ L L+ T+ DP GTG FL +M Sbjct: 326 GGNDGSDLGIVLTPLNITSLMADLIEI----------SPTDTVIDPATGTGAFLIASMQK 375 Query: 227 VADCGSHHKIPPI--------------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 + + + +G EL+ + +A+ M++R D Sbjct: 376 MIEQVEKDDVNYKTSEAKKQAIKKIKSDRLYGIELKSKLYAISATNMILRN-------DG 428 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 ++++G L F L NPP+ + K + Sbjct: 429 RAHLEEGDMFHLSLENDGNFDKLLMNPPYSQAKTKVTSHLS------------------- 469 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR---RWLLENDLIEA 389 M F++ +L+ GGRAA ++ S + +G +++ R + LL+N+ I A Sbjct: 470 --EMNFMIKALGRLK----CGGRAAFIVPQSTMTSGPKAIKDADYRELKQELLDNNRIIA 523 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG--------KKR 441 ++ + F+ + + +L + ++ + D + G +KR Sbjct: 524 VITMNPKTFYPYGTSPVVIVLEHGVPQKDSRSILYDFRDDGNILNPHLGMLEDATATEKR 583 Query: 442 RIINDDQRRQI 452 + + D + +I Sbjct: 584 KRLLDTIKDKI 594 >gi|320087560|emb|CBY97324.1| type I site-specific deoxyribonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 130 Score = 106 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G AIVL LF G A E IRR LE+ I+ ++ LP +LFF T I + +L Sbjct: 15 GTMAIVLPHGVLFRGGA---EERIRRKRLEDGNIDTVIGLPANLFFSTGIPVCILVLKKC 71 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472 K V INA++ + GK++ +N + +I+D Y R E ++SR + Sbjct: 72 KKP---DDVLFINASEYFEK----GKRQNRLNKEHISKIVDTYQFRKEEDRYSRRVPLEE 124 >gi|322392569|ref|ZP_08066029.1| restriction enzyme BgcI subunit alpha [Streptococcus peroris ATCC 700780] gi|321144561|gb|EFX39962.1| restriction enzyme BgcI subunit alpha [Streptococcus peroris ATCC 700780] Length = 660 Score = 106 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 61/386 (15%), Positives = 128/386 (33%), Gaps = 65/386 (16%) Query: 95 NTRNNLESYIASFSDNAKA--IFEDFDFSSTIARL-EKAGLLYKI-CKNFSGI------- 143 + NL+ + S K + F ++ EK L K K+F+ Sbjct: 240 AIKANLQRA--NVSPEVKKDKLLSQFAIIKDDVKINEKNANLGKTPIKHFTEFLYKSIYQ 297 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 L ++ + + Y + + + +TP+ + L L+ Sbjct: 298 SLRYNSSAEDYLGRFYGEFMS-YSGGDGQNLGIVLTPKHITELFCDLV----------DL 346 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 ++DPTCGT GFL AM+ + + S G E + + M+ Sbjct: 347 KPTDKVFDPTCGTAGFLIAAMHDMLTKAENDSQRDQIRKHQLFGIEEQSYMFTIATTNMI 406 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +R D N++ L ++ K+ + + NPP+ + + E Sbjct: 407 LRG-------DGKSNLENQDFLRQNPSKLQLKQCNVGMMNPPYSMGSTANTELYEINFTE 459 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 L G +A +++ S F G E E + Sbjct: 460 --------------------------HLLNSLVEGAKAVVIVPQST-FTG-KTKFEKEAK 491 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNE 437 + +L++ +E ++ L + F+ + + + + + IN D + ++ Sbjct: 492 QNILKHHTLEGVITLNKNTFYGVGTNPCIAVFTAGIPHRLEKECKFINFENDGFEVSKHI 551 Query: 438 GKKRRIINDDQRRQILDIYVSRENGK 463 G D+++ +LD++ R + Sbjct: 552 GLVETATAKDKKQHLLDVWFDRTEAE 577 >gi|269126154|ref|YP_003299524.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183] gi|268311112|gb|ACY97486.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183] Length = 673 Score = 106 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 48/292 (16%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E L R+ ++ TP VV L L I T+ DPTCG+G Sbjct: 163 AFEFLRERYLDLHKRRTQE--TPPQVVRLVAELAG-----------PRIETVLDPTCGSG 209 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 FL + GQ+++ + + + ++D I+ Sbjct: 210 AFLAGMLA----------KGTRRRLLGQDVDEAVARLTAIWLALLDADAD--------IR 251 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L +D F G++ ++NP F + + R+ GLP ++ + Sbjct: 252 SGDSLRRDAFPGEQADLVVANPQFNDRNWGYD-------ELTTDPRWEYGLPPRTESELA 304 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H GG A +++ + + LL + A++ LP Sbjct: 305 WVQHCLAHCRP----GGLAVLLMPPAAASRRAGRRIRAN----LLRRGALRAVITLPLGA 356 Query: 398 FFRTNIATYLWILSNRKTEE-RRGKVQLINATDLWT-SIRNEGKKRRIINDD 447 T + +W+L +E +V +++ + + G+ R DD Sbjct: 357 VPNTAVPLTVWVLRRPVPDERPPSQVLMVDTSRSGEGFVETAGRLWRRFTDD 408 >gi|320535517|ref|ZP_08035619.1| N-6 DNA Methylase [Treponema phagedenis F0421] gi|320147640|gb|EFW39154.1| N-6 DNA Methylase [Treponema phagedenis F0421] Length = 659 Score = 106 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 75/414 (18%), Positives = 141/414 (34%), Gaps = 86/414 (20%) Query: 89 STLGSTNTR-NNLESYIASFSD----NAKAIFEDFDFSSTIARL-----EKAGLLYKICK 138 L R ++ ++SFS+ N + E D + +L ++ Sbjct: 250 EYLKQKQIRQEKIDLMLSSFSEISKDNQRD--EPTDVDKLVGKLLEKEASTNKQIFTYI- 306 Query: 139 NFSGIELHPDTVPDR--VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 F+ I L D + +M +Y + ++ + +TP V + +L D Sbjct: 307 -FNNIYLSIDAMAGHLDIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAEILNVNKD 364 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHG 244 + D G+ GFL +M + D + G Sbjct: 365 SRT----------MDLATGSAGFLISSMEIMIDDTNKTFGKDTSKANKKIEEIKKEQLLG 414 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFG 302 EL E + M++R D S NI++G+T +T + + L NPPF Sbjct: 415 VELNAEMFTLAATNMILRG-------DGSSNIRKGNTFRTPEELYTNFKANRLLLNPPFS 467 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + M F+ +K+E GG AAI++ Sbjct: 468 FEENG----------------------------MPFIKFGLSKMEK----GGLAAIIIQD 495 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421 S +GRA S + +L+ + + A + +P DLF + T ++I + Sbjct: 496 SAG-SGRAISSN----QEILKKNTLLASIKMPVDLFIPMAGVQTSIYIFEAGTPHDYEKT 550 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 V+ I+ + G ++ + I+ +Y + ++ K ++ L Y Sbjct: 551 VKFIDFRNDGYKRTKRGLNEVDSPTERYQDIIKLYKAGKSAKVNKNLWNIDEIY 604 >gi|320536513|ref|ZP_08036543.1| N-6 DNA Methylase [Treponema phagedenis F0421] gi|320146639|gb|EFW38225.1| N-6 DNA Methylase [Treponema phagedenis F0421] Length = 674 Score = 106 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 133/405 (32%), Gaps = 72/405 (17%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAI-----FEDFDFSSTIARLEKAGLLYKI--- 136 + ++ L + + + + DN + + A ++ + ++ Sbjct: 217 NFDINNLIGDKKKTDGQKIYNAIKDNLARANVSPEVKKDKLLTQFAVIKDTAKINEVNVG 276 Query: 137 -----CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-------SEGAEDFMTPRDVV 184 K+++ L+ + + E + RF E + +TPR + Sbjct: 277 LGKTPLKHYTEF-LYKSIYQNIRYNTSAEDFLGRFYGEFMSYSGGDGQALGIILTPRHIT 335 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILV 241 L L ++DP CGT GFL AM+++ Sbjct: 336 ELFCNL----------ADLKPNDKVFDPCCGTAGFLIAAMHNMLLKAKTLDEKNDIKKKQ 385 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNP 299 G E++ + M++R D N+ L+++ F ++ + + NP Sbjct: 386 LFGIEIQSYMFTIATTNMILRG-------DGKSNLYNKDFLNENPFDLQKEGYTVGMMNP 438 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 P+ + +++ D L+ + L GG+ ++ Sbjct: 439 PYSQGSKQNPD--------------------------LYEIAFTEHLLNSVTEGGKVIVI 472 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 + S + + E I+ +L+ +E ++ L + F+ + I + Sbjct: 473 VPQSSM--TGKTTEEKNIKTNILKKHTLEGVITLNKNTFYGVGTNPCIAIFTAHIPHSEN 530 Query: 420 GKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IN D + ++ G D+++ +LD++ R + Sbjct: 531 KVCKFINFEDDGYEVAKHIGLVDNGSAKDKKQHLLDVWFDRTDAP 575 >gi|325848783|ref|ZP_08170293.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480427|gb|EGC83489.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 703 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 72/419 (17%), Positives = 143/419 (34%), Gaps = 76/419 (18%) Query: 38 FTLLRRLECALEPTRSA--------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89 L + L + + +E+Y S D + K ++ Sbjct: 199 LFLFKYLSDIGVLSGDSSFFYIANMYKEEYKKIDPSINDAKVLGKYLDGP-----RETMK 253 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD- 148 TL + S I + K +++ I+ + ++ F E Sbjct: 254 TLFPE--GEDGTSIINGQVFHVK----KDEYNQYISLDNTDKIFKEVVLEFENYEKENGK 307 Query: 149 --TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + S ++E ++ S+ F TP +V+ ++ Sbjct: 308 FIHISTDFKSKLFETFMKH--SDEKSNMGQFFTPLKIVNEMIEMVDI----------YEG 355 Query: 207 RTLYDPTCGTGGFLTDA-----MNHVADCGSHHKIPPILVPHGQEL---EPETHAVCVAG 258 ++ DP CG G F+ +A + + ++ + + + + T + A Sbjct: 356 MSICDPACGVGKFILEAIEDKISEYFTYKKKKLEKRIEIIGYDKMMSERDDLTIILAKAN 415 Query: 259 MLIRRLESDPRRDLSKNIQQGS-TLSKDLF---------------TGKRFHYCLSNPPFG 302 MLI E + + ++++ S +L D + ++ L+NPP+ Sbjct: 416 MLIYFSELFKKNNSLQDVKTISQSLLNDSYYLHQTMLGTLGVGELEENKYDLILANPPYY 475 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + + A + G G G+ LFL + L+ GG A +VL Sbjct: 476 QSKVMMEAAKD----TGYYDLNGAGV------ESLFLEWILKSLKP----GGTANVVLPD 521 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 +F+ A S +++ ++L N IEAI++LP FF T TY+ + E+ Sbjct: 522 G-IFSNYANS---KLKEYMLNNFFIEAIISLPVGAFFNTPKKTYILTVRKATEREKEDN 576 >gi|320010361|gb|ADW05211.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331] Length = 702 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 67/359 (18%), Positives = 118/359 (32%), Gaps = 36/359 (10%) Query: 166 FGSEVSEGAEDF-MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 FG ++ + +TP + L L D + + RT+ DP GTG L Sbjct: 171 FGRQLDANPRQYTLTPPGLAELMADLAQPAGDTVRRGGGSDSRTVLDPAAGTGALLCAVG 230 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR--RLESDPRRDLSKNIQQGSTL 282 + QE +P A+ + + +D + + G TL Sbjct: 231 -------------RPTALYAQEADPGLSALTALRLALHTQGSGADAPTLTA---RTGDTL 274 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 D F G L +PPF ++ D R+ G P ++ + ++ H Sbjct: 275 RTDAFPGLTVDTVLCHPPFNERNWGHDD-------LAYDPRWEYGFPARTESELAWVQHA 327 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L GG A +++ + SG IR LL + A++ALP Sbjct: 328 LAHLRE----GGTAVVLMPPAAASR---RSG-RRIRADLLRRGALRAVIALPAGAAPPYG 379 Query: 403 IATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 I ++W+L ++ +++A + S G+ R R +LD + + Sbjct: 380 IPLHIWVLRKPGAGRPPAPELLVVDAAESEASGAPAGRDRLDW-PAVRGAVLDAWTPFDA 438 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 ++ R R + V+ L L A + D L+ Sbjct: 439 PGRREPVEERPGTSRAVPVIELLDDDVDLAPARHLPPPATGGDAAELARVRERLDDTLR 497 >gi|254669507|emb|CBA03431.1| type I restriction enzyme M protein [Neisseria meningitidis alpha153] Length = 146 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 +P +G FL+HL L+ G+ AI+L LF G A E+ IR LL DLI Sbjct: 18 IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + I+ LP +LF+ T I + ++ K + + + + +G K R + + Sbjct: 71 KGIIGLPANLFYGTGIPACIIVID--KEHAQTAQFAEEGTNQVISGGIKDGNKNR-LREQ 127 Query: 448 QRRQILDIYVS 458 +I+D + + Sbjct: 128 DIHKIIDTFTN 138 >gi|239988283|ref|ZP_04708947.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces roseosporus NRRL 11379] Length = 769 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 56/280 (20%), Positives = 92/280 (32%), Gaps = 33/280 (11%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +E L+ R +TP + L L P A +R++ DP G Sbjct: 209 GQAFEFLLGRQLDANPRQYT--LTPPQLAELMADLAEPPKGADRAARERPVRSVLDPAAG 266 Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 TG L A + + L P A + R Sbjct: 267 TGALLRAVGGPATLYAQEADPGLAALTALRLALAAEGPRRAA-----------DGTHRAA 315 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 ++ G TL D F L +PPF ++ + R+ GLP Sbjct: 316 PGPVVRTGDTLRADAFPELAADTVLCHPPFNERNWGHD-------ELAYDPRWEYGLPAR 368 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 ++ + ++ H+ +L GG A +++ + SG IR LL + A++ Sbjct: 369 TESELAWVQHVLARLRD----GGTAVLLMPPAAASR---RSG-RRIRAGLLRRGALRAVI 420 Query: 392 ALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430 ALP + +LWIL + + L + DL Sbjct: 421 ALPAGAAPPYGVPLHLWILCKPEPGVRPAADLLLADTADL 460 >gi|307290562|ref|ZP_07570473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] gi|306498383|gb|EFM67889.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] Length = 194 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 15/184 (8%) Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 1 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 53 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 54 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 106 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 107 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 166 Query: 519 LKPM 522 L+ + Sbjct: 167 LEAI 170 >gi|307290732|ref|ZP_07570633.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] gi|306498212|gb|EFM67728.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] Length = 193 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 15/184 (8%) Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +H L+ G AIVL LF G A E IR+ LLE+ I A++ +P +LFF Sbjct: 1 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 53 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 T+I T + +L + V I+A+ + GK + ++++ ++IL+ Y R Sbjct: 54 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 106 Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 ++ + ++ + + + P + ++ + + +K+ Q ++ Sbjct: 107 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 166 Query: 519 LKPM 522 L+ + Sbjct: 167 LEAI 170 >gi|239941823|ref|ZP_04693760.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces roseosporus NRRL 15998] gi|291445270|ref|ZP_06584660.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces roseosporus NRRL 15998] gi|291348217|gb|EFE75121.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces roseosporus NRRL 15998] Length = 769 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 56/280 (20%), Positives = 92/280 (32%), Gaps = 33/280 (11%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +E L+ R +TP + L L P A +R++ DP G Sbjct: 209 GQAFEFLLGRQLDANPRQYT--LTPPQLAELMADLAEPPKGADRAARERPVRSVLDPAAG 266 Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 TG L A + + L P A + R Sbjct: 267 TGALLRAVGGPATLYAQEADPGLAALTALRLALAAEGPRRAA-----------DGTHRAA 315 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 ++ G TL D F L +PPF ++ + R+ GLP Sbjct: 316 PGPVVRTGDTLRADAFPELAADTVLCHPPFNERNWGHD-------ELAYDPRWEYGLPAR 368 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 ++ + ++ H+ +L GG A +++ + SG IR LL + A++ Sbjct: 369 TESELAWVQHVLARLRD----GGTAVLLMPPAAASR---RSG-RRIRAGLLRRGALRAVI 420 Query: 392 ALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430 ALP + +LWIL + + L + DL Sbjct: 421 ALPAGAAPPYGVPLHLWILCKPEPGVRPVADLLLADTADL 460 >gi|308272577|emb|CBX29181.1| Probable type I restriction enzyme BthVORF4518P M protein [uncultured Desulfobacterium sp.] Length = 272 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 102/291 (35%), Gaps = 27/291 (9%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 M + + I +L D TG R Y L+NPPFGKK + E Sbjct: 1 MNMFLHNIGDIDSETF---ILPTDSLVAD--TGLRVDYVLTNPPFGKKSSMTFTNEKGEQ 55 Query: 317 KNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + + R S+ + F+ H+ L+ GG+AA+VL + LF G AG Sbjct: 56 EKEDLTYNRQDFWAT-TSNKQLNFVQHIRTMLKT----GGKAAVVLPDNVLFEGGAG--- 107 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--RRGKVQLINATDLWT 432 +R+ LLE + I+ LPT +F+ + + N+ + +V + + + Sbjct: 108 ETVRKKLLETTDLHTILRLPTGIFYAQGVKANVLFFDNKPASKDPWTSEVWIYD----YR 163 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 + K+ + + + ++ Y + + + I R + Sbjct: 164 TNIRHTLKKSPLKLEDLAEFIEYYNAG------NRHKRKETWHEEINPEGRWRKFTYDEI 217 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 + DITW K L L + I A + I N Sbjct: 218 VNRDKTSLDITWLKDKSLADLDNLPDPDLLANDIIENLEAAVESFKEIMLN 268 >gi|126665393|ref|ZP_01736375.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp. ELB17] gi|126630021|gb|EBA00637.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp. ELB17] Length = 214 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 33/213 (15%) Query: 309 KDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 K + RF P L S F++H + L GRAAIV + Sbjct: 2 KWIGSDDPTLINDDRFAPAGVLAPKSKADFAFVLHALSYLSSK----GRAAIVCFPGIFY 57 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 G A E +IR++L++N+ +E +++L +LFF T IA + +LS K + Q I+ Sbjct: 58 RGGA---EQKIRQYLVDNNYVETVISLAPNLFFGTTIAVTILVLSKHKIDTTT---QFID 111 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF---SRMLDY------------- 470 A+ L+ N + D QI+ ++ S+ N + S + Sbjct: 112 ASGLFKKDTNT----NTLTDAHIEQIMQVFDSKANAEHLAQSIPFETIAANDYNLSVSSY 167 Query: 471 -RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 R + + L + T + +L DI Sbjct: 168 VEAKDNREVTDITTLNAELKITVTKIDQLRKDI 200 >gi|71897759|ref|ZP_00679985.1| N-6 DNA methylase [Xylella fastidiosa Ann-1] gi|71732314|gb|EAO34368.1| N-6 DNA methylase [Xylella fastidiosa Ann-1] Length = 222 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 12/148 (8%) Query: 317 KNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + RF G G+ +L H L GRAA+VL + + E Sbjct: 11 RQRPFDRFRTAGGITSGKGNWEWLQHTLACLHDH----GRAAVVLDTGAVTRSSGSKNED 66 Query: 376 E---IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 + IR+W ++ DLI+ ++ LP +LF+ T A + +L+ RK+ R+ K+ L+NA+ + Sbjct: 67 KERSIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVLNKRKSAARKDKIVLLNASRRY- 125 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRE 460 +GK + + ++ + + +Y+ E Sbjct: 126 ---KKGKPKNYLPEEDVQSLAAMYLKGE 150 >gi|297561676|ref|YP_003680650.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846124|gb|ADH68144.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 626 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 104/284 (36%), Gaps = 53/284 (18%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 ++E L R E T ++ L G ++ DP CGTG Sbjct: 136 VFEELCARLARERGRAE----TSPELAAWMAELAGI----------GAGSSVLDPACGTG 181 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNI 276 L+ A+ L GQ+ +P+ + A +++ + + Sbjct: 182 VLLSAALRR-----------GALTVFGQDRDPDALDIATALLVVPHGVSAT--------- 221 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +G +L F R L +PPF + +D V+ R+ GLP +G + Sbjct: 222 AKGDSLRSPAFESSRVDVVLCDPPFRDREWGYEDLVD-------DPRWVHGLPPRGEGEL 274 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 ++ H +++ GGRA ++L +S + G IR LL + + A++ +P Sbjct: 275 AWVQHCLSRVRP----GGRAVVLLPASVAYR----PGGRRIRANLLRSGALRAVLEVPGG 326 Query: 397 LFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGK 439 ++W+L + G V L+ + + + R G Sbjct: 327 --AGAEPGRHVWVLVRPEESHGTGDGVLLVASAEASEASRVWGD 368 >gi|313676045|ref|YP_004054041.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126] gi|312942743|gb|ADR21933.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126] Length = 620 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 70/356 (19%), Positives = 116/356 (32%), Gaps = 61/356 (17%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 N K F F +L+ +LY + F I++ P ++ + ++ L+ Sbjct: 73 PNIKDHFGSF-------QLDDISVLYAL-NKFQEIDI--SNSPAHIIGDAFQTLVG---P 119 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + F TP+ VV LL SP T+ DP CGT GFL +++ ++ Sbjct: 120 NLRGDKGQFFTPKSVVSSMVKLL----------SPKANHTICDPACGTAGFLIESITQIS 169 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + L + N + ++ S D+ Sbjct: 170 KNI--------------SFNGRLIGIEKDDFLANTANAILEIYSKSNFEVINSNSLDIEN 215 Query: 289 GK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPKISD 333 K + ++NPPFG K + + K++ G F + K Sbjct: 216 DKLKKLLGQIDLVVTNPPFGAKIGVKEKKILKQYDFGHSWMFSKTESQWIKTSQILKEQS 275 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +LFL L+ GG+ IVL N G IR N I ++ Sbjct: 276 PQLLFLELCFKLLKK----GGKCGIVLPEGIFGNKSLGYVWDYIR----NNGKILGMIDC 327 Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 P LF T++ T + + KV + R + I+DD Sbjct: 328 PRTLFQPSTDVKTNILFFEKSSNTSTKFKVAIAETCGHDKRGRQLDNSGKKIDDDF 383 >gi|21233564|ref|NP_639481.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770530|ref|YP_245292.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|21115424|gb|AAM43363.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575862|gb|AAY51272.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 487 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 79/493 (16%), Positives = 151/493 (30%), Gaps = 93/493 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--------SFVKVAGYSFYNTSEYSLS 89 ++ L E + I+ + N Sbjct: 6 LIFIKLLSDR--EVHEKNPEMAESGVFQVIEPARNVKFSVAAINAAEEAGIDNPIAVRFD 63 Query: 90 TLGST---NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + + + I FS+N K + RLE A LY + Sbjct: 64 ELRESLELQIKQQNKKRI--FSENEKLALSKDLTKDIVRRLESAD-LYGL---------- 110 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + ++E + + + + TPR VV LA A+ D Sbjct: 111 ----DADINGRLFETFL--NATLRGKSLGQYFTPRSVVKLAVAM----SDLQVGIKHQGC 160 Query: 207 RTLYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQE--LEPETH 252 + D CG+GGFL +A+ + A +G + +P Sbjct: 161 DVVIDGCCGSGGFLIEALAAMWKKVESSPKLSQAAKNELKNDIATKCIYGIDSAKDPALA 220 Query: 253 AVCVAGMLIRR-----------------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + M + E++ + ++ + KD G Sbjct: 221 RIARMNMYLHGDGGSAIYQLDALDKGLAEENNASPESRSELRDFKRVLKDNAEGFA-DVA 279 Query: 296 LSNPPFGKKWEKDKD--------AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 L+NPPF + +E+ K +V ++ G S +FL + L+ Sbjct: 280 LTNPPFARDYERKKRGGGRAYAPSVLDAYELSYDGPAEILPKAKLKSSAMFLERYLDFLK 339 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TNIAT 405 GGR V+ S L + R WL + ++EA+V+LP D F R + T Sbjct: 340 P----GGRLVSVIDDSVL----GSKAFATTRAWLAQKYIVEAVVSLPGDAFQRSEARVKT 391 Query: 406 YLWILSNR-KTEERRGKVQLINATDLWTSIRNEGK------KRRIINDDQRRQILDIYVS 458 + I+ + +E +G+V + + + + ++ +I ++ Sbjct: 392 SILIMRKKVADDEAQGEVFMCYSQFVGIDDPARERVLPVDEDNHKKAQEEIERISKLFAR 451 Query: 459 RENGKFSRMLDYR 471 +G + ++ Sbjct: 452 FSSGDRKKDMNKW 464 >gi|291534097|emb|CBL07210.1| Type I restriction-modification system methyltransferase subunit [Megamonas hypermegale ART12/1] Length = 510 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 73/446 (16%), Positives = 156/446 (34%), Gaps = 46/446 (10%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPT 213 + +++E L+ + + F TP + + P + + + + + D Sbjct: 19 LGDLFEQLLNK---GFKQNEGQFFTPTPIAKFIWESI--PLENILNINKEIKYPKVIDYA 73 Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G FLT+ ++ + G++ G E + V + + Sbjct: 74 CGSGHFLTEGIDVINKIIGNNDNSWVSENIFGIEKDYRLARVSKVSLFMNG-------AG 126 Query: 273 SKNIQQGSTL--SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 + NI G L +KD ++F ++NPP+ K K+ + + G Sbjct: 127 NGNIVFGDGLDNAKDKNIENEKFDILVANPPYSVKAFKNHLNLGENSFELFDKISDDG-- 184 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 + +LF+ + L+ G A ++L S L N S R LL+N I++ Sbjct: 185 --GEIEVLFIERIVQLLKP----GAVAGVILPLSILSNN--TSSYIGAREVLLKNFDIKS 236 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 IV+L + F T T + L ++ K+ + ++ + ++ R I D Sbjct: 237 IVSLGSKTFGATGTNTVILFLKKHNEPPKKYKMIEDSINAIFENNFSDDWIDRKIYLDYL 296 Query: 450 RQI---LDIYVSR--ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 R I +IY + + + +D Y + + ++ + Sbjct: 297 RHIEVDENIYNEFIMKKINYKKFVDNYFKMY-----------VIAFENSSNVKINEKNAF 345 Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN-A 563 + S Q+ L+ K + +Y + F I+ N+ + + F+ Sbjct: 346 KNQSEKEQNKILN--KKFYEYVYEIEKDKLFFFGMIRENKTIIVTAPVENTKQKEFLGYD 403 Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTE 589 + + + G + D + + Sbjct: 404 WSNRKGNEGIQINKMGGMLFDEDNRD 429 >gi|325996787|gb|ADZ52192.1| Type I restriction-modification system DNA-methyltransferase subunit M [Helicobacter pylori 2018] Length = 528 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 15/223 (6%) Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 P +G FL+H+ L+ G+ A++L LF G A E IR+ LL I+ Sbjct: 13 PPEKNGDFAFLLHIIKSLKDT----GKGAVILPHGVLFRGNA---EGVIRKNLLMKGYIK 65 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 ++ L +LF+ T+I + +L R+G V +I+A+ + + +G K R + D Sbjct: 66 GVIGLAPNLFYGTSIPACVIVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQD 120 Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWR 505 ++++D + + + +S+M+ + R + L+K A + + Sbjct: 121 VQKMIDTFNAYKEIPYYSKMVSLEEISANDYNLNIPRYIASKRELEKDLFALINSPSYLP 180 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548 K + + + K + ++ E + + K L Sbjct: 181 KNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKEL 223 >gi|331088477|ref|ZP_08337391.1| hypothetical protein HMPREF1025_00974 [Lachnospiraceae bacterium 3_1_46FAA] gi|330407817|gb|EGG87308.1| hypothetical protein HMPREF1025_00974 [Lachnospiraceae bacterium 3_1_46FAA] Length = 1239 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 79/525 (15%), Positives = 169/525 (32%), Gaps = 51/525 (9%) Query: 46 CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY 103 E + ++ + + E F Y+ +Y+ + + ++ L Sbjct: 301 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLR-- 358 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 I F N F+D L+ +L ++ + F + +++ +++E L+ Sbjct: 359 ILKFYTNNDFAFKDVHNEQLF--LQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLL 415 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTD 222 + + F TP + L P + + K G + D CG G FLT+ Sbjct: 416 SK---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTE 470 Query: 223 AMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 V+ C + G E + V + + N Sbjct: 471 GFEAVSACVKANDGLRELDRSFAENNIFGIEKDYRLARVSKISLFMHG-------AGEGN 523 Query: 276 IQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G L + F ++NPP+ K H + F + Sbjct: 524 IIFGDGLENYPDKNIKPNTFDILVANPPYSVSAFK-------PHLKLKNNSFSILDTISN 576 Query: 333 DGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 +GS LF+ ++ L+ AA++L SS L + R +L+N I A Sbjct: 577 NGSEIETLFVERISQLLKP----NAVAAVILPSSIL--NKENESFICARESILKNFKIRA 630 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 IV + F T T + L ++ + + ++ +G + + I + Sbjct: 631 IVLMGNKTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDAVFNGCNLDGWEDKAILEQYL 690 Query: 450 RQI---LDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWR 505 ++I ++Y + + D + + K L + K ++ + Sbjct: 691 KKIDVSSEVYERFL-SEAVDIGDIEDKYFLKYKEAFLALSKTKEKQKQKTFGKLSEKEQK 749 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550 KL ++ ++ + + + + + + + + K Sbjct: 750 KLLTKQYYQYVKKIEREKMKYFSFVYDQRTLIVAAPDDNKGQEKF 794 >gi|153815281|ref|ZP_01967949.1| hypothetical protein RUMTOR_01515 [Ruminococcus torques ATCC 27756] gi|145847343|gb|EDK24261.1| hypothetical protein RUMTOR_01515 [Ruminococcus torques ATCC 27756] Length = 1255 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 79/525 (15%), Positives = 169/525 (32%), Gaps = 51/525 (9%) Query: 46 CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY 103 E + ++ + + E F Y+ +Y+ + + ++ L Sbjct: 317 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLR-- 374 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 I F N F+D L+ +L ++ + F + +++ +++E L+ Sbjct: 375 ILKFYTNNDFAFKDVHNEQLF--LQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLL 431 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTD 222 + + F TP + L P + + K G + D CG G FLT+ Sbjct: 432 SK---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTE 486 Query: 223 AMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 V+ C + G E + V + + N Sbjct: 487 GFEAVSACVKANDSLRELDRSFAENNIFGIEKDYRLARVSKISLFMHG-------AGEGN 539 Query: 276 IQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G L + F ++NPP+ K H + F + Sbjct: 540 IIFGDGLENYPDKNIKPNTFDILVANPPYSVSAFK-------PHLKLKNNSFSILDTISN 592 Query: 333 DGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 +GS LF+ ++ L+ AA++L SS L + R +L+N I A Sbjct: 593 NGSEIETLFVERISQLLKP----NAVAAVILPSSIL--NKENESFICARESILKNFKIRA 646 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 IV + F T T + L ++ + + ++ +G + + I + Sbjct: 647 IVLMGNKTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDAVFNGCNLDGWEDKAILEQYL 706 Query: 450 RQI---LDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWR 505 ++I ++Y + + D + + K L + K ++ + Sbjct: 707 KKIDVSSEVYERFL-SEAVDIGDIEDKYFLKYKEAFLALSKTKEKQKQKTFGKLSEKEQK 765 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550 KL ++ ++ + + + + + + + + K Sbjct: 766 KLLTKQYYQYVKKIEREKMKYFSFVYDQRTLIVAAPDDNKGQEKF 810 >gi|317501643|ref|ZP_07959834.1| hypothetical protein HMPREF1026_01778 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896894|gb|EFV18974.1| hypothetical protein HMPREF1026_01778 [Lachnospiraceae bacterium 8_1_57FAA] Length = 1255 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 79/525 (15%), Positives = 169/525 (32%), Gaps = 51/525 (9%) Query: 46 CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY 103 E + ++ + + E F Y+ +Y+ + + ++ L Sbjct: 317 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLR-- 374 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 I F N F+D L+ +L ++ + F + +++ +++E L+ Sbjct: 375 ILKFYTNNDFAFKDVHNEQLF--LQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLL 431 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTD 222 + + F TP + L P + + K G + D CG G FLT+ Sbjct: 432 SK---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTE 486 Query: 223 AMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 V+ C + G E + V + + N Sbjct: 487 GFEAVSACVKANDSLRELDRSFAENNIFGIEKDYRLARVSKISLFMHG-------AGEGN 539 Query: 276 IQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I G L + F ++NPP+ K H + F + Sbjct: 540 IIFGDGLENYPDKNIKPNTFDILVANPPYSVSAFK-------PHLKLKNNSFSILDTISN 592 Query: 333 DGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 +GS LF+ ++ L+ AA++L SS L + R +L+N I A Sbjct: 593 NGSEIETLFVERISQLLKP----NAVAAVILPSSIL--NKENESFICARESILKNFKIRA 646 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 IV + F T T + L ++ + + ++ +G + + I + Sbjct: 647 IVLMGNKTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDAVFNGCNLDGWEDKAILEQYL 706 Query: 450 RQI---LDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWR 505 ++I ++Y + + D + + K L + K ++ + Sbjct: 707 KKIDVSSEVYERFL-SEAVDIGDIEDKYFLKYKEAFLALSKTKEKQKQKTFGKLSEKEQK 765 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550 KL ++ ++ + + + + + + + + K Sbjct: 766 KLLTKQYYQYVKKIEREKMKYFSFVYDQRTLIVAAPDDNKGQEKF 810 >gi|282864680|ref|ZP_06273735.1| N-6 DNA methylase [Streptomyces sp. ACTE] gi|282560619|gb|EFB66166.1| N-6 DNA methylase [Streptomyces sp. ACTE] Length = 663 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 101/275 (36%), Gaps = 36/275 (13%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ +E L++R+ TP + L + L T++DP CG Sbjct: 129 THTFEFLLQRWLDAHVRQISA--TPARLATLMARIAL----RTRTAWGQKTSTVFDPACG 182 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +G L+ A + + +G E++ + A + E D R Sbjct: 183 SGHLLSAAA---------GQASGGVELYGCEIDSALAELAEARLAFAGDERDVRTR---- 229 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I +L D + R L NPPF ++ + + R+ GLP ++ Sbjct: 230 ITAVDSLRDDPYPDLRADIALCNPPFNERDWGYE-------ELATDPRWVHGLPPRTEPE 282 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + ++ HL +L GG A +VL + IR LL + ++ A+VALP Sbjct: 283 LAWVQHLLARLRS----GGTAVVVLPPAVASRRAGR----RIRGSLLRHGVLRAVVALPP 334 Query: 396 DLFFRTNIATYLWILSNRKTEE--RRGKVQLINAT 428 +++ LWIL L++A+ Sbjct: 335 GCAQPHSVSLQLWILRAGDERTGGSGDDALLVDAS 369 >gi|329963238|ref|ZP_08300975.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057] gi|328528934|gb|EGF55874.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057] Length = 484 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 64/418 (15%), Positives = 136/418 (32%), Gaps = 79/418 (18%) Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-------------VPDRVMSNI 158 + I +DF+F ++ + ++ + + I + + + ++ Sbjct: 82 RYIIQDFEF-----KINRIEIVSECVDIINSIYKETENLGSSLNGTITYYDIDSAIFDDL 136 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE ++++ E ++ PR + +L +L YDP CG GG Sbjct: 137 YEKIMKK-----PEKFQNLYIPRHIRYLMASLTQINYSDRI----------YDPMCGNGG 181 Query: 219 FLTDAMNHVADCGSHHKIPP------------ILVPHGQELEPETHAVCVAG---MLIRR 263 L + + P+T +L+ Sbjct: 182 LLLSVYERIMIKEYESQNQDVIDTDNDGFSTLRYSLMANLPSPDTLNGSDPNPQQLLLSA 241 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 L R N+Q + +D + F ++NPPFG+K+ K E Sbjct: 242 LSFQLRGIKKANLQP-NNFIQDN-ISEHFDVIIANPPFGQKFNKPHQINEVV-------- 291 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 I + ++F+ +A+ L GRA I++S L S + R+ L Sbjct: 292 -------IKNAEIVFIDKIADTLSPT----GRATIIVSEGFL--SNTNSQHMQCRKKLFT 338 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 +E +++LP+ +F T + + ILS R V + + ++ + Sbjct: 339 QYRLEGVISLPSGIFLNTQAKSSILILSKD-EHNNRPDVWFYELQNDGYTNDRAKRRTKE 397 Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 +++ + R ++ + F + R + L + + + Sbjct: 398 FP---LPEVVKAFRERLYNSQNKRTETCFF----VSFEEIQRNDYNLSYSRYKQFNYE 448 >gi|225568452|ref|ZP_03777477.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM 15053] gi|225162680|gb|EEG75299.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM 15053] Length = 605 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 111/345 (32%), Gaps = 47/345 (13%) Query: 137 CKNFSGIELHPDTVPDRVMS-NIYEHLIRRFGSEVSE-GAEDFMTPRDVVHLATALLLDP 194 F + P ++ F V + TP + + Sbjct: 238 ILKFIEDNILPFINDKSTSGQDLLNLFFVTFNKYVGKSDKNQAFTPDHITDFMAKITGVN 297 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPET 251 ++ + DP CG+G FL AM D + + +G E + Sbjct: 298 KHSV----------VLDPCCGSGSFLVRAMTQALDDCATAAEQETIKRNQIYGIEFDENV 347 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + MLI D + NI+QGS D + + L NPP+ + Sbjct: 348 YGLATTNMLIH-------SDGNSNIRQGSCFKLSDWIKEAKPNVILMNPPYNG-----QR 395 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 EH + P + F+ ++A+ L A ++ + + Sbjct: 396 IHLPEHYVKTWTKNKKEDPSKG---LYFVKYIADTLNSINQQAKLAVLLPVACAIGTSGE 452 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL---SNRKTEERRGKVQLIN 426 + ++ +L+ + ++A+ LP ++F+ + + + + K Sbjct: 453 I---ARLKSEILKENTLDAVFTLPNEIFYPGASASACCMVFKIGTKHKDMTNPDTYFGYC 509 Query: 427 ATDLWTSIRNEGK--------KRRIINDDQRRQILDIYVSRENGK 463 D + +N G+ + + ++ I ++Y +R++ Sbjct: 510 KEDGFKKKKNLGRVEQVDTVTGKSRWVEIEKEWI-ELYRNRQSVD 553 >gi|260589500|ref|ZP_05855413.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583] gi|331082930|ref|ZP_08332050.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540068|gb|EEX20637.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583] gi|330399925|gb|EGG79583.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium 6_1_63FAA] Length = 588 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 74/496 (14%), Positives = 153/496 (30%), Gaps = 64/496 (12%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + E + + F +F + + LE I + N + Sbjct: 3 QRIEEIWRELKRKVPLEQIFYLSLVLAFCQNQRKEKGKITQAGVKEVLE-RIQGY--NLR 59 Query: 113 AIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 F F F L+ + IE+ L + ++ Sbjct: 60 VAFTRIFQFIRW-EILDDKD-----IEEMFQIEVSL-FREYLEKGGKLSELFQMIFAQAG 112 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP +V L +L D CG G + + Sbjct: 113 KWDVYAPTPTEVRKLIVDILGFHKAHRIA----------DFCCGGAGLGLELWKRLTIRN 162 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGK 290 + HG+EL +C A L I++ L+ D + Sbjct: 163 KE------VSFHGEELNR---NLCDAAQL----YFSAYEVPDGEIEERDILTIPDTAESQ 209 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + + P G+ E + + R K +F+ + +L+ Sbjct: 210 SYDIIVLDIPRGQNVT--------EVYDEKDPRLLCFNKKNIYSDWIFIQDVLYRLKKT- 260 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G AA++++ L E +R ++ ND +EA++ LP +L+ + T L I Sbjct: 261 ---GTAAVLVTPGALTRVN----EEILREQIVVNDWLEAVITLPENLYSKYYAGTELLIF 313 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + K R+GKV I+ + + + +G++ I + Q+ +I+V K + Sbjct: 314 NKDKESSRKGKVIFIDISKEF---KRQGRRTVEITEAGLLQVREIFVHSWEVKGVSAVCS 370 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 R + + + + + E + + L + + ++ Sbjct: 371 R---------EQIQKNQYSFKPSQYIQQEDEWEFVSELVLEDIAQITRGAQVPKRADVVE 421 Query: 531 WAESFVKESIKSNEAK 546 + + +IK + K Sbjct: 422 DGDVY-FLNIKDIQEK 436 >gi|323439267|gb|EGA96993.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11] Length = 172 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 12/180 (6%) Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSN 412 G A+VL LF G A E IRR+L+E + +EA++ LP ++F+ T+I T + + Sbjct: 2 GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF-- 56 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471 +K ++ V I+A++ + GK + ++D Q +I++ Y +E K+S + Sbjct: 57 KKCRQQDDNVLFIDASNNFEK----GKNQNHLSDTQVERIINTYKGKETIDKYSYSATLQ 112 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + P R ++ L+ K + + ++++ Sbjct: 113 EIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 171 >gi|227511526|ref|ZP_03941575.1| possible site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus buchneri ATCC 11577] gi|227085260|gb|EEI20572.1| possible site-specific DNA-methyltransferase (adenine-specific), HsdM subunit [Lactobacillus buchneri ATCC 11577] Length = 193 Score = 103 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 15/123 (12%) Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFR 400 + L+ GR A+VL LF G A E +IR++++E D +++A++ +P +LF+ Sbjct: 1 MLYHLKTD----GRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYG 53 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T+I T + + + I+A+ + GK + + D+ ++I+D Y R+ Sbjct: 54 TSIPTVVLVFDK---SRINHDILFIDASKDFEK----GKNQNNLTDENVKKIIDTYKDRK 106 Query: 461 NGK 463 + K Sbjct: 107 DVK 109 >gi|293115501|ref|ZP_05791808.2| putative type I restriction-modification system, modification subunit [Butyrivibrio crossotus DSM 2876] gi|292809619|gb|EFF68824.1| putative type I restriction-modification system, modification subunit [Butyrivibrio crossotus DSM 2876] Length = 587 Score = 103 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 74/409 (18%), Positives = 153/409 (37%), Gaps = 52/409 (12%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + + TP +V LA LL ++ ++ D GTG FL+ A Sbjct: 120 SMDGRKFGGESETPLSIVKLAYGLLKPENE-----------SIADFCSGTGVFLSYA--- 165 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 ++ + +G E+ + M + I+QGS S D Sbjct: 166 -------AQMNKGSLYYGIEINTLAKELSEIRMSLLTDNHL--------IRQGSVFSMD- 209 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + F S+ P+ + K + ++ ++ P L + + F++++ L Sbjct: 210 -ADRTFDKIFSDSPWNVRSWKANSDEQTINEIEQI---VPELKRATTADWHFIVNVMRHL 265 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G+A + S+ +NG IR +++ +EA+++LP +L+ T+I T Sbjct: 266 KEE----GKAVVTSSNGLTWNGGIS---KAIRERIVKLGWLEAVISLPANLYSTTSIPTS 318 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + +LS + + V+LI+A+D + G+++ ++D+ +IL++ +N S+ Sbjct: 319 ILVLSKKDNKG----VRLIDASD----MATVGRRQNELDDEAINEILELMT--KNSANSK 368 Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 ++ + + + + L I ++ LD L Sbjct: 369 LVSIDEIATQDYAINPSRYLQKEVKVENGVPLGDLIVNITRGAQLKASELDELVSDKPTS 428 Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 Y Y + +++ I S + LK K N PV Sbjct: 429 YQYL-MLANIQDGIISEDLPYLKELDKKQEKYCIKNNSLVISKNGAPVK 476 >gi|197119367|ref|YP_002139794.1| type I restriction/modification system DNA methyltransferase [Geobacter bemidjiensis Bem] gi|197088727|gb|ACH39998.1| type I restriction/modification system DNA methyltransferase, putative [Geobacter bemidjiensis Bem] Length = 707 Score = 103 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 102/282 (36%), Gaps = 42/282 (14%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V YE +IR + + F TP VV LL P + + DP Sbjct: 186 DVKGVAYEEVIRNTFDKSDH--QQFFTPHQVVTFMVELL----------RPFLHGAIGDP 233 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CGT GFL + + + G G E++ V +L+ + Sbjct: 234 ACGTAGFLAEVVRTGVEVG---------SISGFEIDERLSWVSGINLLLHGANKFEIKYF 284 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + G L+K F ++NPPFG + + + G+L R G+ Sbjct: 285 NCGGTLG-PLAKPYFN--TLDAIITNPPFGSDFNDEDALRDFSLGQGKLSR-RRGI---- 336 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ + L+ GG IV+ L A ++R+++L++ I AIV+ Sbjct: 337 ----LFIERCWSLLKD----GGVVGIVIDEGVLNLPSAT----DVRQFILDHFDIMAIVS 384 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 LP F N+ + L + R +V A ++ Sbjct: 385 LPETAFMPYANVNASILFLKKTTEQNRSTEVFFGKADNIGRK 426 >gi|294084222|ref|YP_003550980.1| N-6 DNA methylase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663795|gb|ADE38896.1| N-6 DNA methylase [Candidatus Puniceispirillum marinum IMCC1322] Length = 790 Score = 103 bits (257), Expect = 9e-20, Method: Composition-based stats. Identities = 69/397 (17%), Positives = 125/397 (31%), Gaps = 58/397 (14%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + YE ++ +TPR + A ++ + YDP Sbjct: 279 DALGQFYETFLKYANDAS--EMGIVLTPRHITKFAAEVVGVGAHDVI----------YDP 326 Query: 213 TCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 TCGTGGFL A++ V + +G E ++ + M+ R Sbjct: 327 TCGTGGFLVAALDKVRETCQQTDGEKFDAFRNDNLYGIEQSDRVFSIALVNMIFRG---- 382 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK----NGELGR 323 D S I G+ F + K E + +G R Sbjct: 383 ---DGSSKIHNGNCFDNQ---------------FNMLSKTVKRQSASECEPNKASGPFTR 424 Query: 324 FGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 P +S+ F+ H + AI+ + G + R+ LL Sbjct: 425 IFMNPPFAVSEPECDFVDHAILQAAPSAKL---FAILPNGPI--TGDDH---KKWRKNLL 476 Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 ++A++ + DLF+ N TY IL + V D ++ + Sbjct: 477 LQHTVKAVIRMQDDLFYPVANKGTYAIILETWRPHRIDDLVYFGILFDGQSASQKSKLIA 536 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 + D +I D +++ R K+L PL++ + D A L + Sbjct: 537 KATAQDNMNEITDDLRKFMQIGDTKIGAKP-----REKILSPLKLDGLYDFASEAYLSSS 591 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + L +L+ + + P+ A ++E Sbjct: 592 EKISIAPEKSIAGVLKMLESVEAKNAPFIIAAKEIRE 628 >gi|327413128|emb|CAX68157.1| putative restriction endonuclease, alpha subunit [Salmonella enterica subsp. enterica] Length = 629 Score = 103 bits (257), Expect = 9e-20, Method: Composition-based stats. Identities = 58/344 (16%), Positives = 113/344 (32%), Gaps = 68/344 (19%) Query: 131 GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 G+ KI ++ V+ Y + ++ + + +TPR + L Sbjct: 278 GVFKKIIEDICEQVWPYINVYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHIAELF- 335 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---ILVPHGQ 245 + + D GTGGFL AM H+ + G Sbjct: 336 ---------SLLANVNPESRVLDICAGTGGFLISAMQHMLKKAVTDEQRQDIRRNRLIGV 386 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFG 302 E P+ A+ + M++R D N+ Q S + + + + + NPP+ Sbjct: 387 ENSPKMFALAASNMILRG-------DGKANLHQASCFDEAITSSIKKMKPNVGMLNPPYA 439 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAAIV 359 + SD + F+ + LE G AIV Sbjct: 440 QS--------------------------KSDAELHELYFVKQMLTCLEPGSIG---IAIV 470 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 S + +R LL+ ++A++++P +LF+ + T + + + Sbjct: 471 PMSCAISPN-------PVREELLKYHTLDAVMSMPAELFYPVGVVTCIMVWISGVPHAVS 523 Query: 420 G-KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460 K D + +++G+ R + +D+Y +RE Sbjct: 524 DRKTWFGYWRDDGFVKTKHKGRIDLNEKWPAIRDRWVDMYRNRE 567 >gi|157143789|emb|CAL47057.1| type I restriction-modification system, M subunit [Listonella anguillarum serovar O2] Length = 152 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 12/151 (7%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE L+ SE GA + TPR ++ + L+ K + DPT GTGG Sbjct: 7 YEGLLEINASEKKSGAGQYFTPRVLIEVMVELMKPTPKD--KRHNQKGDVIVDPTAGTGG 64 Query: 219 FLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 FL A ++ + G EL P+T + + +++ L D D Sbjct: 65 FLIAAHQYMEKNFDVTGLDEADYDSYQHETFFGMELVPDTRRLAMMNLMLHDLAVD---D 121 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 + + G TLS + + L+NPPFG Sbjct: 122 ENSGVLYGDTLSNEGKALPKASLILANPPFG 152 >gi|325840368|ref|ZP_08167015.1| N-6 DNA Methylase [Turicibacter sp. HGF1] gi|325490353|gb|EGC92680.1| N-6 DNA Methylase [Turicibacter sp. HGF1] Length = 615 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 133/426 (31%), Gaps = 67/426 (15%) Query: 84 SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL----------- 132 S Y+ + N ++ I S + K I ++ + ST+ L+ A Sbjct: 222 SRYTGDGDLANAIWNCVDKKIKGSSLDNKEIIQN-ELKSTLLSLQDAQKEGIKEKYPKGA 280 Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L ++ KN + + + +I+ + + + +TP + L L Sbjct: 281 LLELTKNVDNLLYDYHKHGELDIMSIFFTVFLSYSTSGGSDLGIVLTPAHITKLFCDLAA 340 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELE 248 ++ + D GTGGFLT A + ++ +G E + Sbjct: 341 INLES----------KVLDICAGTGGFLTSAWKTIKLSDKYTEMQKEVFRQNNLYGVEKD 390 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEK 307 + + M I +D +I +G S K + + NPP+ Sbjct: 391 KSIYTIIALNMFI-------NKDGKSHIFKGDCFSLKKEISDFECNVGFINPPYSDSIYS 443 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 + + F+ + + L G AI+ ++ Sbjct: 444 E---------------------------LSFVELMLDSLLPESIG---IAILPVNAISSR 473 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 + S +++ +L + A + +P LF+ T + + + G Sbjct: 474 TKKHSDILSVKQSILSKHTLVASIQMPPLLFYPKGTETVVLVF--KTGAAHTGDTWFAKF 531 Query: 428 TDLWTSIRNEGKKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486 D + I+++ + ++ D+Q RQ+LD Y + FS + Sbjct: 532 DDGYELIKHQKTRTPRLDADEQYRQLLDAYCKKSETDFSFNKHVTYTQQWVYTMFEDANY 591 Query: 487 SFILDK 492 Sbjct: 592 EISDSD 597 >gi|261868513|ref|YP_003256435.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413845|gb|ACX83216.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 825 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 107/349 (30%), Gaps = 63/349 (18%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 I + + LY + +++ +E I Sbjct: 218 KEVIDINDKINLDDHS--------LYYVVGQL--QNYCLIDAERDAIADAFETFIGY--- 264 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV- 227 + F TPR+V+ L +L D DP CG+GGF+ +++ H+ Sbjct: 265 ALKGPQGQFFTPRNVIKLMVNILNQGVDEKI----------IDPACGSGGFIVESLRHIW 314 Query: 228 --------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 + + + HG E + V A M I D Sbjct: 315 AIWDKDAQRLKWNNLALQEEKQKAAMSLIHGIEKDSLLAKVSKAYMAILG-------DGK 367 Query: 274 KNIQQGSTLSKDLFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 I +L + F+ L+NPPFGK + ++K + + Sbjct: 368 GGIFCEDSLELPTHWDTKTQQSIHINSFNCLLANPPFGKDIKITGKEKLAQYKLAKKWKK 427 Query: 325 ---GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 S+ M + + GGR I++ + + S+ Sbjct: 428 DGDKYIETNKSNSEMPPQILFIERCLDLLTDGGRMGIIIPETYF-----HAPRSQYVMEF 482 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 + I ++ LP + F N A + + K +++ K+ + A ++ Sbjct: 483 MAKHNIFCLIDLPHNTFRPHNNAKCVVVFL-EKNRKQQEKILMCVAEEM 530 >gi|304312534|ref|YP_003812132.1| Type I restriction-modification system, methyltransferase subunit [gamma proteobacterium HdN1] gi|301798267|emb|CBL46489.1| Type I restriction-modification system, methyltransferase subunit [gamma proteobacterium HdN1] Length = 693 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 116/388 (29%), Gaps = 65/388 (16%) Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132 + F+ + G R +E K IF + I ++A Sbjct: 228 RQAWKRRFWAGPKEQFEPQGRKAIRARIEELFTEVKKQYKNIFRG---NEEITLSDRA-- 282 Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L I + + Y+ L+ + + TPR VV L +L Sbjct: 283 LAFIVSELAKYDFT--RTDVDAKGVAYQELVG---VNLRGDRGQYFTPRGVVKLVIEML- 336 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------ 234 P TL DPTCGTGGFL + H+ Sbjct: 337 ---------DPKEHETLLDPTCGTGGFLVATLGHMLKRFRQEQDTQAGNESTTEFLNVHE 387 Query: 235 --KIPPILVPHGQELEPETHAVCVAGMLI------RRLESDPRRDLSKNIQQGSTLSKDL 286 K +G + +P M++ + ++ + +K Sbjct: 388 RLKEYAAANVYGADFDPFLIRAAQMNMVLAGDGRGHIYNINSLEFPLGHLADLDS-AKKE 446 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--------RFGPGLPKISDGSMLF 338 +NPPFG + ++++ R L +LF Sbjct: 447 IPLGSLDIIATNPPFGSDIPITDKHILEQYELAHHWESDGEGGFRNTGSLKGSVAPEILF 506 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + L+ G GR IVL L N A IR W++ + A V LP + F Sbjct: 507 IERCIKWLK---AGTGRMGIVLPDGVLGNPAAEY----IRWWIMRETQVLASVDLPVEAF 559 Query: 399 ---FRTNIATYLWILSNRKTEERRGKVQ 423 NI T L L + EE+R + Sbjct: 560 IAEANVNILTSLLFLRRKSEEEKRAEAL 587 >gi|186683509|ref|YP_001866705.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] gi|186465961|gb|ACC81762.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] Length = 614 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 109/311 (35%), Gaps = 60/311 (19%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L+KI + + + ++ ++ S + G + TP +V LA ++ Sbjct: 303 LFKIVEKLQEFSFIDSKAD--IKGSAFQSVLG---SAIRAGMGQYFTPPPIVDLAVGIM- 356 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------KIPPILVPHGQE 246 P + DP CG+G FL+ +++V HG E Sbjct: 357 ---------KPTASDMILDPFCGSGHFLSRCLDYVVQHQGATLDSYTLHQFKFFHLHGIE 407 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-----------SKDLFTG--KRFH 293 + + M++ D NI+ L D + F Sbjct: 408 KSERMVRIAMTDMMLH-------DDGHTNIRNLDALLSFENYPDIVALNDSEDDTPEVFS 460 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNG 352 L+NPPFG ++ + GRF G K S +L L L+ Sbjct: 461 MILTNPPFGSIMRQEVMEMV--------GRFQLGHKKKSLPLEILGLERCFQFLKP---- 508 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWIL 410 GG+ +IVL L N + +R W+ I+A+++LP + F + + T L + Sbjct: 509 GGKLSIVLPDGLLKNKSSI----FVRDWVENVAKIKAVISLPEEAFNPYGAMVKTSLCVF 564 Query: 411 SNRKTEERRGK 421 K E+R K Sbjct: 565 QKYKNGEKRDK 575 >gi|308178691|ref|YP_003918097.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] gi|307746154|emb|CBT77126.1| type I restriction-modification system modification subunit [Arthrobacter arilaitensis Re117] Length = 621 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 61/342 (17%), Positives = 116/342 (33%), Gaps = 64/342 (18%) Query: 130 AGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 GLL +I + + V+ Y + ++ +G +TP+ V L Sbjct: 273 KGLLNEIVTLLAEKVMPFLTVYEDFDVVGAFYGEFL-KYTGGDGKGLGIVLTPKHVTELF 331 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCGSHHKIP--PILVPHG 244 + D + D GTGGFL +M + + ++ G Sbjct: 332 ALIANVSKDD----------KVLDICAGTGGFLISSMVKMIQTATTEAEVEDIKKNRLIG 381 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRFHYCLSNPPF 301 E P +A+ + M++R D N+ QG T + + + NPP+ Sbjct: 382 VEQSPSMYALGASNMILRG-------DGKANLHQGSCFDTAISAAVKKNKANVGMINPPY 434 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 K E + F+ + + L GG AIV Sbjct: 435 AKTKEDLH-------------------------ELRFVEQMLDSLAP---GGTGIAIVPV 466 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG- 420 + + LL+ +EA++++P ++F+ + T + + + + E+ Sbjct: 467 TCATAPSVHEN-------NLLKKHTLEAVMSMPPEVFYPVGVITCIMVFTAGVSHEKNDR 519 Query: 421 KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460 K D + ++N G+ R R + +D Y +RE Sbjct: 520 KTCFGYWRDDTFIKVKNLGRVDRHRTWAATRDRWVDTYRNRE 561 >gi|149391962|emb|CAL68658.1| restriction-modification enzyme [Thermus scotoductus] Length = 1251 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 37/480 (7%) Query: 43 RLE--CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100 + L+ ++L + ID + + TR + Sbjct: 303 YFDLIDRLQRLYRDGMREFLKEDVTYIDDRTIRDA----------FKFFKNDPDATREKI 352 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 Y F D + + A +L KI + I L+ D ++ + +++E Sbjct: 353 LDYFRRQKYFTNNDFSFLDVHNEQLFYQNAAILLKIVRMLQDIRLNGD-QQNQFLGDMFE 411 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + + + + F TP V L +++P + D CG G FL Sbjct: 412 YFLDQ---GFKQTEGQFFTPLPVTRFIILSLPLETIFSDEQNPPK---VIDYACGAGHFL 465 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 T+ + + + + + + + + + ++ + NI Sbjct: 466 TEMASQLRRLRPGQDVKFYSKFYSEFYGVEKEYRLSK----VAKVSAFMYNQDEINIIYA 521 Query: 280 STL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 L F +SNPP+ K + + + + P +D F Sbjct: 522 DALVRHPDIPEGAFALLVSNPPYSVKGFLETLPKTERERYELIKTVDPKSYPTNDAIEAF 581 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + A +L P G AAI++ SS L N + R LL N I A+V L F Sbjct: 582 FLERARQLLAPH---GLAAIIVPSSLLSNTDNIY--TRTREILLRNFDIVALVELGNGTF 636 Query: 399 FRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 +T T L + ++ +G + D Q Y+ Sbjct: 637 GKTGTNTVTLFLRRKDDNPAPADHYRNRVNAWFNGNMDKDG----VFADASLLQAYCDYI 692 Query: 458 SRENGKFSRML-DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 + +L + ++ + R +F + +L+ +++K S + L Sbjct: 693 GIPLDDYRTLLQSNPSPALLDTEIFKEYRRAFDSSSE-VEKLKKRKSFQKKSEDERQAEL 751 >gi|118475739|ref|YP_892534.1| restriction and modification enzyme CjeI [Campylobacter fetus subsp. fetus 82-40] gi|118414965|gb|ABK83385.1| restriction and modification enzyme CjeI [Campylobacter fetus subsp. fetus 82-40] Length = 1285 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 80/524 (15%), Positives = 157/524 (29%), Gaps = 53/524 (10%) Query: 46 CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105 + E + + + Y ++ E S++ + + + +N + +I Sbjct: 302 DSFEAMQERLMKLYKDAMKEYLNEEITYVSDEQIDEQFSDFKRNKIKTQTLKNQINEFIR 361 Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 + + F + + + A +L I K F + L ++++ N++E +++ Sbjct: 362 MLKFYSHSDFSFIEVHNKTLFEQNAQVLKAIIKLFENLRLT-QNKTNQLLGNLFELFLQK 420 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + F TP + L P LF + D CG G FL N Sbjct: 421 GMKQ---DEGQFFTPIQICEFIVHSL--PLKMLFDNGIPK---VIDYACGAGHFLNTYAN 472 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + +G E E V + I L + Sbjct: 473 IAKSISNDSEA-INSNIYGIEKEYRLSKVAKVSAAMYG-------QSGVKISYADALDES 524 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F + F ++NPP+ K + + K F + S+ F + Sbjct: 525 KFKERDFDLLIANPPYSVKGFLQTLSKNECEKYEL---FNYINLESSNAIECF---FIER 578 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 + AI+L SS L + R +L N I +I ++ F T T Sbjct: 579 ANRLLKSNSKVAIILPSSIL---NKDGVYEKTREIILRNFDIISITEFGSNTFGATGTNT 635 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---ENG 462 + LS K G + + +++ + ++ + L Y + Sbjct: 636 VILFLSK-KQTYANGF-----NSQSYENLKENIESSLDFSNLYLLEGLLAYCEFMGYKKD 689 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 +F L GY I S + K L + L + + + + Sbjct: 690 EFREFLSG---GYGEI-------YSHDIFKEYLNEFKNSSALSNLKKSKRYKDSNEKEAL 739 Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 Q+ F+ + + K L K I + Sbjct: 740 EQK--------EFLNFCLNLEKEKILFFSLVKYTNTLIIKSPSE 775 >gi|323438356|gb|EGA96133.1| hypothetical protein SAO11_2769 [Staphylococcus aureus O11] Length = 123 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 14/137 (10%) Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 K + GQE T+ + ML+ + R + +I+ TL F G F Sbjct: 1 KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGTTFDA 55 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 ++NPP+ KW D E +G L S F+ H+ + L+ G Sbjct: 56 VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 106 Query: 355 RAAIVLSSSPLFNGRAG 371 A+VL LF G A Sbjct: 107 TMAVVLPHGVLFRGAAE 123 >gi|330468262|ref|YP_004406005.1| N-6 DNA methylase [Verrucosispora maris AB-18-032] gi|328811233|gb|AEB45405.1| N-6 DNA methylase [Verrucosispora maris AB-18-032] Length = 653 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 93/272 (34%), Gaps = 48/272 (17%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 ++ L +RF + + F TP D+ L L T+ DP G+G Sbjct: 128 AFDELWQRFSAPGPGRS--FATPDDLADLMVGLAGVD-----------GCTVLDPAAGSG 174 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A+ +GQEL+ + + +R + D Sbjct: 175 AVLRAAVR-----------AGCTTAYGQELDEGLARLAELWLALREVPGDMN-------- 215 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L D + G + + +PPFG D+ + R+ G ++ + Sbjct: 216 VGDSLRADAYAGHTYDTVVCHPPFGATNWGDE-------ELSHDPRWIVGTTPRTEPELA 268 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H L GG A +++ + IR LL + A++ALP Sbjct: 269 WVQHALAHLR----AGGHAVLLMPPTVASRRAGR----RIRAELLRRGALRAVIALPPGA 320 Query: 398 FFRTNIATYLWILSNRKTEE-RRGKVQLINAT 428 + +LW+L + + L++A Sbjct: 321 AAPHGVPLHLWVLRRPAPDTPPPARTLLVDAA 352 >gi|86146745|ref|ZP_01065065.1| putative type I restriction-modification system, M subunit [Vibrio sp. MED222] gi|85835395|gb|EAQ53533.1| putative type I restriction-modification system, M subunit [Vibrio sp. MED222] Length = 198 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 11/167 (6%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W A L G + +++ V+L L+ + E R + + G Sbjct: 31 LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMID----DGQEAFVEMKEFY 86 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127 F+ + S + + ++++ S I + + K D FS + Sbjct: 87 QQDNIFFLPEDARWSFVKARAKQDDIAIIIDTALSTIEKNNPSLKDALPDNYFSRQGLEV 146 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +K L +N + D + ++ +YE+ + +F + +G Sbjct: 147 KKLASLIDSIENIDTLANECDMSEEDLVGRVYEYFLGKFAATEGKGG 193 >gi|224371956|ref|YP_002606122.1| HsdM3 [Desulfobacterium autotrophicum HRM2] gi|223694675|gb|ACN17958.1| HsdM3 [Desulfobacterium autotrophicum HRM2] Length = 672 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 64/399 (16%), Positives = 116/399 (29%), Gaps = 97/399 (24%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-- 201 V V+ +++ +R G ++TP V + + Sbjct: 289 NGTLKDVSGDVLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLTMAFHDIVQDAETVG 347 Query: 202 -------SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----------KIPPILVPH 243 + + DPTCG+ GF + A++H+ Sbjct: 348 QLTTRDANNRPVFRFCDPTCGSYGFGSVALSHLKAALDDIPMADSARDALFNDMMEYSFV 407 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG- 302 G + P + M ++ ++L+ +NPPFG Sbjct: 408 GADSAPRMVMLARVNMALQGANKAKIFYT------DNSLTTPSLQPNSVDLICTNPPFGT 461 Query: 303 -----------KKWEKDKDAVEKEHKNG----------------ELGRFGPGLPKISDGS 335 + ++KD D + ++ G G + G Sbjct: 462 PKFGKGKATQKQHYQKDMDLILDNFRSDLINVSTTKADKMECRPTTGGLALGSKPNNKGE 521 Query: 336 M------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL- 382 LF+ L+ GGR IVL L S + +R +++ Sbjct: 522 WKPVKGGSIDPAVLFIDRCLQLLKP----GGRLLIVLPDGVL----CNSSDRYVREYMMG 573 Query: 383 --END--------LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGK 421 + D +I+A+V+LP D F T T + L RK E + Sbjct: 574 TKDADGQFVGGKAIIKAVVSLPADTFKLSGTGAKTSVLYLQKRKASPDHPEQFLPEPQTD 633 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 V + A L ++N + + +I+ Y E Sbjct: 634 VFMAVAETLGYVVKNNIEDYDSGVPNDLDKIVGAYRRAE 672 >gi|29830085|ref|NP_824719.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces avermitilis MA-4680] gi|29607195|dbj|BAC71254.1| putative type II restriction-modification system DNA adenine-specific methylase [Streptomyces avermitilis MA-4680] Length = 678 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 108/322 (33%), Gaps = 57/322 (17%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE L+ R +TP D+ L L G R+ DP CGTG Sbjct: 169 YEFLLGRHLDANPRQYT--LTPGDLAALMADLA------------GPARSFLDPACGTGA 214 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L +GQ+ PE + + + + Sbjct: 215 LLRAVA-----------PGTDQELYGQDSAPELAELTALRLALH-------TRAAVRTAV 256 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G +L D + R L +PPF ++ + R+ G P ++ + + Sbjct: 257 GDSLRADAYETLRADAVLCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELAW 309 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H +L GG A +++ + SG IR LL + A++ALP Sbjct: 310 VQHALARLRD----GGTAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVIALPVGAA 361 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV- 457 NI +LW+L + + +V L + + + +G+ R R +LD + Sbjct: 362 PPYNIPLHLWVLRRPERAPAQPEVLLADTAGVSEA--ADGRGRLDW-PAVRAAVLDAWHP 418 Query: 458 ------SRENGKFSRMLDYRTF 473 +RE SR + Sbjct: 419 FDRTGTTREEPGVSRSVPVIEL 440 >gi|57242351|ref|ZP_00370290.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57017031|gb|EAL53813.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 818 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 66/414 (15%), Positives = 137/414 (33%), Gaps = 56/414 (13%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 ++ + G ++I+ E K+ F+ S + L + ++ AK Sbjct: 174 YIKNEVKKRGVNHINDELVKKLKD--FWKISS---EDAIRASIERTLSDLLDGSNNKAKK 228 Query: 114 I--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 I + + I +L+ + + + I + DT + + I Sbjct: 229 IELLQKNVLNDQKIKKLKSNDWIEILTTILTDIYKYIDTESEEGQDILNLFFIAFNKYTG 288 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------ 224 TP + ++ + + D TCG+G FL AM Sbjct: 289 KADKNQAFTPDHITDFMCRVVGVD----------RTKRVLDITCGSGSFLVQAMVKELSD 338 Query: 225 ----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + + +G E+E + + + MLI D + NI+ GS Sbjct: 339 CKRGKTEKEAKELMEKVKKENIYGIEVEEKAYGLATTNMLIHG-------DGNSNIEFGS 391 Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 K F L NPP+ K + + + G G P ++F+ Sbjct: 392 CFEKKEFIKAANPDIILMNPPYNAKPISIPEYYKNKWSKGAKE--GKEDPTKG---LVFI 446 Query: 340 MHLANKLELPPNGG---------GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +L++ ++ + A++L S + S I+ +LEN+ +EA+ Sbjct: 447 QYLSDIIKEINEEREAKNEARKEVKLAVLLPMSAAI--GSKSDIKNIKEAMLENNTLEAV 504 Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 LP ++F+ +++ + + K + + +G K++ Sbjct: 505 FTLPAEVFYPGASVSACCMVFTLGKPHINTDG---TTNETFFGYFKEDGFKKKK 555 >gi|256026504|ref|ZP_05440338.1| N-6 DNA methylase [Fusobacterium sp. D11] gi|289764516|ref|ZP_06523894.1| type I restriction modification system M subunit [Fusobacterium sp. D11] gi|289716071|gb|EFD80083.1| type I restriction modification system M subunit [Fusobacterium sp. D11] Length = 250 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 106/275 (38%), Gaps = 33/275 (12%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 +L+ ++ + +++ +LS D + L+NPPF K +V++ Sbjct: 1 MNLLLHDMK-------TPKLKRIDSLSTDYSEENDYSLVLANPPF-------KGSVDESL 46 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + L R + K +LF+ L+ GGR A+++ LF A + Sbjct: 47 LSNTLTR----MVKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKN 96 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +R+ L+EN+ +EA++++P+ +F ++T + I + V + T Sbjct: 97 LRKELIENNQLEAVISMPSGVFKPYAGVSTGILIFTKT-GNGGTDNVWFYDMTADGY--- 152 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 + KR + ++ I++ + + EN K + D F + + + L Sbjct: 153 SLDDKRNPVEENDIPDIIERFSNLENEKDRKRTDKSFF----VPKQEIVDNDYDLSINKY 208 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530 + + + + ++ K + + + Sbjct: 209 KEIVYEKVEYEEPKVILQKLEELSKSIDENLKELK 243 >gi|78776736|ref|YP_393051.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] gi|78497276|gb|ABB43816.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] Length = 669 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 67/444 (15%), Positives = 139/444 (31%), Gaps = 91/444 (20%) Query: 120 FSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 +++L ++ + + + +M +Y + ++ + Sbjct: 297 LDKEVSKLIDGKASINKQIFTFIYHNIFLSIDAMAGHLDIMGEMYSEFL-KYALGDGKEI 355 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 +TP + + T +L ++ + D G+ GFL +M + D + Sbjct: 356 GIVLTPPYITKMMTTILGVNQNS----------KVMDLATGSAGFLISSMEMMIDDAEAN 405 Query: 235 KIPPIL------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 G EL E + M++R D S NI +G+T Sbjct: 406 YGKETTAAKKKIDIIKKEQLLGVELNAEMFTLAATNMILRG-------DGSSNIHKGNTF 458 Query: 283 SKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 + +T + + L NPPF M F+ Sbjct: 459 NTPEQLYTSFKANKLLLNPPFSYDENG----------------------------MPFIA 490 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 +K+E GG AI++ S S + +L+ ++A + +PTDLF Sbjct: 491 FGLDKMEK----GGLGAIIIQDSAGSGKATKSN-----QAMLKKHTLKASIKMPTDLFQP 541 Query: 401 -TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + T +++L K + V+ I+ RN+G KR + + Y Sbjct: 542 MAGVQTSIYVLEAHKPHDFEQTVKFID-------FRNDGYKRTSRALQEIDEPTKRYAD- 593 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 + + KV P ++ + + + +D + + + L+ Sbjct: 594 --------IVKIYKAGKNAKVEAPWNLNEVYIEDFITPSGSDWNFDQHKTIDSKPTLEYF 645 Query: 520 KPMMQQIYPYGWAESFVKESIKSN 543 K + + + + K Sbjct: 646 KKTVSDYLSWEVSNILKQRGDKGK 669 >gi|227499337|ref|ZP_03929449.1| possible site-specific DNA-methyltransferase (adenine-specific) [Anaerococcus tetradius ATCC 35098] gi|227218590|gb|EEI83828.1| possible site-specific DNA-methyltransferase (adenine-specific) [Anaerococcus tetradius ATCC 35098] Length = 295 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 108/303 (35%), Gaps = 54/303 (17%) Query: 216 TGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TGGFLT + + + +G E + + +C+ MLI ++ Sbjct: 1 TGGFLTSWLKELRKQVKTVADEGAFSKSIYGIEKKQFPYMLCITNMLIHDMDL------- 53 Query: 274 KNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I ++L +D +F L NPP+G ++D F L Sbjct: 54 PEIYHDNSLLRDVLDYTDEDKFDVILMNPPYGGSEKEDVKNH-----------FPADLAS 102 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 + F+ + +L+ GR A++L LF + + + I++ LLEN + I Sbjct: 103 SETADL-FMSVIMYRLKEK----GRVAVILPDGFLF--GSDNAKLNIKKNLLENFNLHTI 155 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 + +P +F T+I T + N + ++ + D + + K + + Sbjct: 156 IRMPNSVFAPYTSITTNILFFDNTGETKETWFYRM-DMPDGYKNF----SKTKPMKLAHF 210 Query: 450 RQILDIYVSRENGKF------------------SRMLDYRTFGYRRIKVLRPLRMSFILD 491 +++D + RE + S D + + +L P+ + + Sbjct: 211 DKVIDWWDKREKIEIDGFYKAKKFTKKELAEDLSYNFDQCGYPHEEEVILDPMDLIYEYQ 270 Query: 492 KTG 494 + Sbjct: 271 EER 273 >gi|293189376|ref|ZP_06608099.1| ribosomal protein L11 [Actinomyces odontolyticus F0309] gi|292821839|gb|EFF80775.1| ribosomal protein L11 [Actinomyces odontolyticus F0309] Length = 279 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 76/240 (31%), Gaps = 60/240 (25%) Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 V H K L G E +T + + + L D I+Q Sbjct: 1 MFVQCAKFVECH--HEKASRKLSLFGTEKTGDTIPLAKMNLPLHGLSGD--------IRQ 50 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 ++ S+D + +G+ ++ Sbjct: 51 DNSYSEDPYKAD------------------------------------------NGNFIW 68 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + L + GRA V+++S G E +IR+ L+E+ ++ +VA+ + F Sbjct: 69 IQQFYAAL----SAKGRAGFVMANSACDTG---HSEKDIRQRLIESGTVDVMVAVGPNFF 121 Query: 399 FRTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + + LW L K R V I+A ++ I + + I+ +Y Sbjct: 122 YTVTLPVTLWFLDKAKLGTAREDTVLFIDARHVFYQIDRAHRDFTAEQIEFISNIVRLYR 181 >gi|282918167|ref|ZP_06325909.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus C427] gi|282317958|gb|EFB48325.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus C427] Length = 207 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 16 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 75 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 76 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 134 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 135 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 194 Query: 162 LIRRFGSEVSEG 173 LI RF + + Sbjct: 195 LIGRFAATAGKK 206 >gi|297561636|ref|YP_003680610.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846084|gb|ADH68104.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 709 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 44/278 (15%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +E L+ R + + P ++ L L + G T+ DP CG Sbjct: 171 TAFERLLSRL--DQRSPSGSHTVPPELADLMVVL-----AGIANAGSGPEDTVADPACGR 223 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG L A GQ+ + + + + ++ Sbjct: 224 GGLLLAAAR-----------GGRRALLGQDRDAASVWLAALRLAFAG-----ALTGEADL 267 Query: 277 QQGSTLSKDLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + L F + PPFG++ + + E R+ G+P Sbjct: 268 RVSDALRLPAFAPDAPDGADGADAVVCAPPFGERNWGVE-------ELAEDPRWTYGVPP 320 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 + + ++ H + + GG ++ + IRR LL A+ Sbjct: 321 RLESDLAWVQHCLSLVRP---GGSAVVLMPPGAAQRPSGRR-----IRRSLLRAGAFRAV 372 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 V+LP + LW+L + + V L++ Sbjct: 373 VSLPPGFAAHYAVPLQLWVLRRPERDAVPAPVLLVDTA 410 >gi|55820899|ref|YP_139341.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus LMG 18311] gi|55736884|gb|AAV60526.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus LMG 18311] Length = 210 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 29/222 (13%) Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + RF G+ + FL H + GR AI L LF G A S Sbjct: 13 DDPRFREYGIAPKTKAEDSFLSHCLYHTKES----GRVAITLPHGVLFRGAAKGRIS--- 65 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 + L++ IE+++ P LF T I + IL + + ++A+ + ++N Sbjct: 66 KTLIDKHQIESVIGFPDKLFLNTGIPVCVLILKKNRANS---DILFVDASQGFEKMKN-- 120 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 ++ + + +I + + R+ + + + L+ Sbjct: 121 --QKQLRPEDIYKITETVIHRK---------AVDKYSHLATLEEVIENDYNLNIPRYV-- 167 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 T+ + P+ + + + +I + + + Sbjct: 168 ---DTFEEEEPIDLADIQGQIDEVDAEIAKANQTLANHFKEL 206 >gi|308272576|emb|CBX29180.1| hypothetical protein N47_J01610 [uncultured Desulfobacterium sp.] Length = 226 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 52/259 (20%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57 M+ + + + + +W L D +G + L L+ + +P + Sbjct: 1 MSNEASNTSGIISKVWSFCNTLRDDGVG--YGDYLEQLTYLLFLKMADEFSKPPHNRELN 58 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKAI 114 Y+ +L ++ + + S + K I Sbjct: 59 ------------------------IPKAYTWESLTVKRGAELESHYTTLLRELSHS-KGI 93 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F + +++ L+K+ + + IYE L+ + + GA Sbjct: 94 LGQI-FIKSQNKIQDPAKLFKLIDMIDKEQWTVMGTD--IKGKIYEGLLEKNAEDTKSGA 150 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----- 229 + TPR ++ A + P ++++ DP CGTGGF A +++++ Sbjct: 151 GQYFTPRALIKAMVACV----------QPQPMKSIADPACGTGGFFLAAYDYISNSENFT 200 Query: 230 -CGSHHKIPPILVPHGQEL 247 + +G E+ Sbjct: 201 LTKEQKEYLKYKTFYGNEI 219 >gi|268324774|emb|CBH38362.1| hypothetical protein BSM_18390 [uncultured archaeon] Length = 186 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 49/159 (30%), Gaps = 15/159 (9%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 +WK A+ L + ++ V+L L+ + + + ++E+ E Sbjct: 11 EQKLWKAADKLRSNMDAAEYKHVVLGSIFLKYISDSFDERHEQLQEQVSEGADPEDRNEY 70 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124 F+ + L ++ I + + K + T+ Sbjct: 71 ---SMENIFWVPEKARWCYLQKNAKQPEIGKIIDDAMELIEKENPSLKGVLPKDYARPTL 127 Query: 125 ARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162 + L ++ I L ++ ++ +YE+ Sbjct: 128 DK----RRLGELIDLIGTIGLGDYESKSKNILGRVYEYF 162 >gi|111219762|ref|YP_710556.1| putative type I restriction system adenine methylase [Frankia alni ACN14a] gi|111147294|emb|CAJ58942.1| putative type I restriction system adenine methylase [Frankia alni ACN14a] Length = 712 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 99/274 (36%), Gaps = 48/274 (17%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 ++E L R+ S + TP V L L A T+ D CG G Sbjct: 165 LFEVLRVRYREVYSRQVAE--TPPAVADLMVGLAGLGRMAG-------ELTVLDSACGVG 215 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 G L A ++ + GQ+++P + AG+L+ + I Sbjct: 216 GLLEAA-----------RVAGVRRLLGQDVDPTAARITGAGLLLHGAD--------ARIV 256 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 +L D F G + L PP G++ + V+ +G G+P + + Sbjct: 257 AADSLLADAFVGGQADVVLCGPPSGQRAWPHDELVDSPW-------WGYGVPPRGEPELA 309 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES--EIRRWLLENDLIEAIVALPT 395 ++ H G R A VL L A S + IR LL + A++ LP Sbjct: 310 WVQHCLAH-------GRRGAPVL---VLMPAAAASRPAGRRIRANLLRAGALRAVLGLPL 359 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 DLF A LW+L + +V + A++ Sbjct: 360 DLF-GAGSAPDLWVLRVPGDDVPPAQVLMGLASN 392 >gi|269125657|ref|YP_003299027.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183] gi|268310615|gb|ACY96989.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183] Length = 698 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 95/268 (35%), Gaps = 40/268 (14%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E S + TP + L LL P R + DP CG G L A H Sbjct: 167 EDSTSGGTYGTPPKLADLMARLLKP------SGGPYPAR-VLDPACGGGTLLAAAARH-- 217 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 GQ+ P +L+ E++ +++G +L D F+ Sbjct: 218 ---------GATFLAGQDSLPVQARRSTVRLLLAAPEAEVT------VREGDSLRADAFS 262 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 G L NPP+G D + R+ GLP ++ + ++ H LE Sbjct: 263 GVTVDGVLCNPPYG-------DRDWGHDELAYDPRWAYGLPARAESELAWVQHALAHLEP 315 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GG A ++L + A S +R LL + A++ALP +I ++W Sbjct: 316 ----GGLAVMLLPPAV----AARSSGRRVRGALLRGGAVRAVIALPPGAAVPLHIGLHVW 367 Query: 409 ILSNRKTEE-RRGKVQLINATDLWTSIR 435 +L + V ++ + S R Sbjct: 368 VLQRPDPKAGPPEAVLFVDTAAVPESGR 395 >gi|197294500|ref|YP_001799041.1| Restriction enzyme alpha subunit [Candidatus Phytoplasma australiense] gi|171853827|emb|CAM11772.1| Restriction enzyme alpha subunit [Candidatus Phytoplasma australiense] Length = 587 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 58/348 (16%), Positives = 109/348 (31%), Gaps = 67/348 (19%) Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 ++ L+Y + + I + VM Y I+ + + +TP + Sbjct: 244 NKIPNNNLVYFLTELKEKIMPFIHSDQWDVMGTFYREFIKYVTED--KQTGLVLTPPHIT 301 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPILV 241 L + + DP CGTGGFL AM ++ + ++ Sbjct: 302 DFFCELADIQSSDI----------VLDPCCGTGGFLIAAMKYMCQKAKNEKQIEVIKTKQ 351 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNP 299 G E + M++ D NI G D F + NP Sbjct: 352 LLGIEKRKDMWLHASVNMMMHG-------DGHTNIFYGDCFKFKIDNFKHNQPTVVFLNP 404 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 P+ + E + F+ LEL G AIV Sbjct: 405 PYNEPSE----------------------------QLRFIQKA---LELTTPKGQVIAIV 433 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418 +S+ + + ++ +L N + A + P +LF + T + I + + Sbjct: 434 QASAT----GQSTAVNNAKKEILNNHTLLASFSCPKELFHGIAGVITNILIFAAHVPHDS 489 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDD---QRRQILDIYVSRENGK 463 + L + +K + I + + + +DIY +++ K Sbjct: 490 KKNTFL----GWFKDDGFIKQKNKRIEKNWKLIKDKWIDIYRNKKEVK 533 >gi|313903009|ref|ZP_07836404.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965] gi|313466733|gb|EFR62252.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965] Length = 906 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 53/309 (17%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +E FGS + T R + A+L + DP Sbjct: 305 DSIGKAFESF---FGSIFRGELGQYFTMRQLARFIVAMLDIDHRD----------YVIDP 351 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAGMLI 261 T G+GGFL + + V +G E+ P +C +L+ Sbjct: 352 TAGSGGFLLEVLLQVWHKIDKDFAGRSDLERLKIDFALHKVYGIEIHPVLARICKINLLL 411 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFT--------GKRFHYCLSNPPFGKKWEKDKDAVE 313 D NI+ + +F RF + NPPFG ++ + + Sbjct: 412 H-------HDGHTNIEGDRSCLDSIFNLPRLNPPTAGRFTRVVGNPPFGDTVKEGDEDLL 464 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 ++ F + + + + GGR +++ L N S Sbjct: 465 GQNSL---SNFHVAEGRT---QVPSEHVILERAIQFLADGGRLGLIIPDGILNNPGDHSN 518 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNI--ATYLWILSNRKTEERRGKVQLINATDLW 431 ++RR+L+ N +IEAIV+LP F ++ T + + E +V NA + Sbjct: 519 CPQVRRFLVMNGVIEAIVSLPDYAFRKSGAQNKTSILFFRKFEPHE---RVAFKNA---Y 572 Query: 432 TSIRNEGKK 440 + R GK Sbjct: 573 DAAREAGKN 581 >gi|282907752|ref|ZP_06315594.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328657|gb|EFB58928.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus WW2703/97] Length = 200 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + ++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEG 173 LI RF + + Sbjct: 188 LIGRFAATAGKK 199 >gi|16415962|emb|CAC85954.1| AloI restriction modification enzyme [Acinetobacter lwoffii] Length = 1262 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 158/474 (33%), Gaps = 53/474 (11%) Query: 112 KAIFEDFDF---SSTIARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + F + DF RL + A +L K+ + + I L T ++ + +++E + + Sbjct: 355 QKFFTNNDFSFLDVHNERLFYQNAEVLLKVLQMWQDIRLTSATGHNQFLGDMFEGFLDQ- 413 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 V + F TP + L+ P ++L +++P + D CG G FLT+ Sbjct: 414 --GVKQSEGQFFTPMPICRFI--LMSLPLESLVRDNPTPPMAV-DYACGAGHFLTELALQ 468 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ--QGSTL-- 282 HK + + + L + + + IQ G L Sbjct: 469 FQPLLEQHKPLAAPAEYHKS----MVGIEKEYRLSKVAKVSAFMYGHQGIQVCYGDGLVN 524 Query: 283 SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S + F R F ++NPP+ + + + +E + + ++ F Sbjct: 525 SHEAFPDIRDGHFDLLVANPPYSVR--GFLETLPEEDRKAYSLTNTINDTETANSIETF- 581 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + + GG AAI+L +S L NG S R LL+ I AI + F Sbjct: 582 --FIERAKQLLKSGGVAAIILPASILSNGG--SAYIRAREILLQYFDIVAIAEFGSGTFG 637 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD--------QRRQ 451 +T T L ++T+ + + + S +K+ + D Sbjct: 638 KTGTNTVSLFLRRKRTQPDTAEHYRERIEEWFKSCTTSKRKQVLYKDGHLIEKYCAHINV 697 Query: 452 ILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 L Y S + S M Y F LA L ++ LS Sbjct: 698 PLADYQSFLRGEAEGSWMSHEHFQSY---------HDKFDTSTE-LANLRKQRKFKALSE 747 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL--KVKASKSFIVAFI 561 Q+ +I K + ++ + + L + + + F+ Sbjct: 748 YEQTA--EIAKRYLGYVHSIERDKLYHFCLASDQTNPVLIIRSPSGTKEMKQFL 799 >gi|269219200|ref|ZP_06163054.1| restriction enzyme BgcI subunit alpha [Actinomyces sp. oral taxon 848 str. F0332] gi|269211347|gb|EEZ77687.1| restriction enzyme BgcI subunit alpha [Actinomyces sp. oral taxon 848 str. F0332] Length = 666 Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 69/426 (16%), Positives = 129/426 (30%), Gaps = 80/426 (18%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDL--------ESFVKVAGYSFYNTSEYS------- 87 R E L+ R+A + + + ++N + Sbjct: 172 RAEVQLDDVRAAAERLHEGMRNYGSVENDRKAPLVSAILLALQNPYFNIDRLTSVSPGNN 231 Query: 88 LSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTIARLEKAGL---------LY 134 + E Y+ S + + + F F +L ++ + Sbjct: 232 YQVWDGRIIYDAAEQYMKSEALMPQAKIGTLLDQFSFIKQAPQLNRSHRDLGESPLKWMT 291 Query: 135 KICKN-FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 +I +N P V+ N Y I +G G +TP V L L+ Sbjct: 292 RILENDVYHAVTDPSMTAFDVLGNFYHEFIS-YGGGDGSGLGIVLTPEHVTTLMAELIDV 350 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HKIPPILVPHGQELEP 249 + DPT GT FL AM + D + +G EL+ Sbjct: 351 N----------ATDYVLDPTAGTASFLIAAMQRMFDDAGDNAAMREDIRKNRLYGIELQD 400 Query: 250 ETHAVCVAGMLIRR-----LESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFG 302 + A+ M++R D + +G D G F L NPP+ Sbjct: 401 KLFAIGTTNMILRGDGKANFRRDSIFEAPMAEMRGDMKLSDGTIALGHGFTKVLLNPPYS 460 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + G+ R + + F+ L GG+ A+++ Sbjct: 461 QA-------------KGKNTR--------NLSELAFIERALEFLNP----GGKLAVIVPQ 495 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRG 420 S + + +R++LE+ +E ++ + F + T + I + + Sbjct: 496 SAMV--GKTKEDKARKRYILEHHTLETVITMNPMTFTNSGHTPHTVIAIFTAGRKHREDQ 553 Query: 421 KVQLIN 426 KV+ +N Sbjct: 554 KVRFVN 559 >gi|313892186|ref|ZP_07825779.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E] gi|313119324|gb|EFR42523.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E] Length = 594 Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 72/374 (19%), Positives = 130/374 (34%), Gaps = 57/374 (15%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R++ TP +V L +L + D G G F+T Sbjct: 114 LRKYAENS--------TPDTLVDLVIKILNIN----------PGDKVCDICGGIGNFITK 155 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA----GMLIRRLESDPRRDLSKNIQQ 278 A ++ + + + +E+ T A+ V +L+ + + NI Sbjct: 156 A--YLKE--------KKAIYYSKEIN--TQAISVMEIRVDVLLHDDKEKNIYTEAGNIF- 202 Query: 279 GSTLSKDLFTGKRF-HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 D +F N P+ + DK +V+ + PG+ K + L Sbjct: 203 -DLFFNDRVKNDKFFDKIFGNYPW--RIFIDKYSVKNIDFLKYIDSKVPGILKRNMSDWL 259 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F + + + L+ I+ + S S R++ L N LIEAI+ALP +L Sbjct: 260 FNILMIHMLKDTGKA---VGIMTNGSIW---NQMSDCKNARKYFLSNGLIEAIIALPANL 313 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F T+I T L + S K+++I+AT + ++I + + I Y+ Sbjct: 314 FKSTSIPTVLIVFS-----HGNKKIKMIDATSICVENMR----QKIFSTENIETIYKAYL 364 Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD-KTGLARLEADITWRKLSPLHQSFWL 516 E + S ++ + P R + L+ +T + L Sbjct: 365 --EETENSIFVNVEDILKDEELNIHPKRYLTHITLPENGKELKTVLTDLYRGSNISAKEL 422 Query: 517 DILKPMMQQIYPYG 530 D LK +Y Y Sbjct: 423 DKLKTDKPTLYRYV 436 >gi|149176155|ref|ZP_01854771.1| type I restriction-modification system, M subunit, putative [Planctomyces maris DSM 8797] gi|148845022|gb|EDL59369.1| type I restriction-modification system, M subunit, putative [Planctomyces maris DSM 8797] Length = 104 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 50/87 (57%), Positives = 65/87 (74%), Gaps = 4/87 (4%) Query: 295 CLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPPFG +W+K + ++KEH+ +G GRFGPGLP++SDGS+LFL +K+ +GG Sbjct: 1 MLSNPPFGVEWKKIQKEIKKEHEQDGFNGRFGPGLPRVSDGSLLFL---ISKMRPAKDGG 57 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRW 380 R IVL+ SPLF G AGSGESEIRR+ Sbjct: 58 SRFGIVLNGSPLFTGNAGSGESEIRRY 84 >gi|311899430|dbj|BAJ31838.1| hypothetical protein KSE_60720 [Kitasatospora setae KM-6054] Length = 652 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 102/304 (33%), Gaps = 48/304 (15%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E ++ R+ + E +TP + L L+ + ++DP CGT Sbjct: 129 FESVLARWKDAYARQVE--VTPEPIAALMVELVAP-------VGAPLTGPVFDPACGT-- 177 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 GQE++P+ + + D + ++ Sbjct: 178 ---------GTLLLAAAQAGATRLIGQEIDPDLAELSRRRL-------DLAGAGTVTVEA 221 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G +L+ D F + NPPFG++ R+ GLP D + + Sbjct: 222 GDSLTADAFPDCSAPAAVCNPPFGQRHWG-------RDGLAYDSRWAYGLPAQGDPELAW 274 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L H+ L GGRA I + + IR L+ N ++A+++LP Sbjct: 275 LQHVLAHLSP----GGRAVIAMPPAAASRPSGR----RIRAELVRNGKLQAVISLPPGSA 326 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 ++ LW+L R V + A T + R ++ ++ Sbjct: 327 STHSMGIDLWVLGYG----TRTSVLFLTAARH-TDPAAGQRHAVDWPSVHR-EVTTAWLD 380 Query: 459 RENG 462 ++G Sbjct: 381 FQHG 384 >gi|251773333|gb|EES53882.1| probable N-6 DNA methylase [Leptospirillum ferrodiazotrophum] Length = 796 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 114/338 (33%), Gaps = 60/338 (17%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F T L + + + K + L V + + +E+ FGS + T Sbjct: 148 FPDTRITLPDKKI-FDVVKILQDVSLMGSDVDN--IGAAFENF---FGSIFRGELGQYFT 201 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------ 227 R + ++L + + DPT G+GGFL +A+ V Sbjct: 202 MRQIARFTVSMLEITHEDF----------VLDPTAGSGGFLLEALLQVWHGVDTKFHGQS 251 Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +L +G E+ +C +L+ D NI+ + Sbjct: 252 DQQIIRTKNDFALLRVYGIEIHDILSRICKINLLLH-------HDGHTNIEGDRSCLDTY 304 Query: 287 FTG-------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPGLPKISDGS 335 FT ++F + NPPFG + E+ + + E+ GR +P Sbjct: 305 FTKPRLRLCFEQFSKVVGNPPFGDEVEEGDEDLLGENSLENFEIAKGRQK--VPSE---- 358 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + + GG+ +VL N S +R +L + IEAIV+LP Sbjct: 359 ----HVILERAIDFLEPGGQLGLVLPDGLFNNQGELSNCPRVRSFLAKQGFIEAIVSLPD 414 Query: 396 DLFFRTNI--ATYLWILSN-RKTEERRGKVQLINATDL 430 F ++ T + K ++ L +A ++ Sbjct: 415 FAFRKSGAQNKTSILFFRRFTKLQKHTFDQLLEDAIEM 452 >gi|187729745|ref|YP_001837336.1| type I restriction-modification system M-subunit-like protein [Acidithiobacillus caldus] gi|167782130|gb|ACA00201.1| type I restriction-modification system M-subunit-like protein [Acidithiobacillus caldus] Length = 856 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 79/480 (16%), Positives = 122/480 (25%), Gaps = 137/480 (28%) Query: 42 RRLECALEPTRSAVREKYLAFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RRL+ E R+ R+++ +I + G +F S+ + + + Sbjct: 103 RRLKEIRESLRAFNRKEFQDLLFVCHSILRDVHKMDPGRAFDTISKILFIKMYVERSGQH 162 Query: 100 ---LESYIAS-------FSDNAKA-IFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHP 147 Y+ +FE L + L + F I Sbjct: 163 GTFTTDYLDRRAAVRLPTDPAVHDGLFEQTKAYYKADDLFAASDKLDISEETFRRIVKQL 222 Query: 148 DTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + D + +E + + F TPR VV LL + Sbjct: 223 ERFDLSKTGDDIKGLAFEKFLG---TTFRGELGQFFTPRPVVEFMVDLL----------N 269 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------------------- 241 P + DP G+GGFL A HV Sbjct: 270 PREGERICDPASGSGGFLIRAFEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEE 329 Query: 242 ------------------------------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271 +G + EP M++ D Sbjct: 330 AFSRLNRELLPSDDNNKPIDTRVGRLAWQCIYGTDAEPRAARTAKMNMIMHG-------D 382 Query: 272 LSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR------- 323 I L + G RF L+NPPFG +D+ + Sbjct: 383 GHGGIHYHDGLLDINGIFGGRFDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCR 442 Query: 324 ----------------------------FGPGLPKISD-GSMLFLMHLANKLELPPNGGG 354 F G K + ++F+ N L+ GG Sbjct: 443 EGGYGPAWEESHQSLLAAAAARKPILDLFEIGKGKKNRPTELIFVERCLNLLKP----GG 498 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412 R IVL L N +RRW + A+V+LP F + L L Sbjct: 499 RMGIVLPDGNLNNPSLAW----LRRWAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRK 554 >gi|302530957|ref|ZP_07283299.1| predicted protein [Streptomyces sp. AA4] gi|302439852|gb|EFL11668.1| predicted protein [Streptomyces sp. AA4] Length = 583 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 88/271 (32%), Gaps = 59/271 (21%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E L RF + TP L L + DP CG G Sbjct: 126 FEQLCDRFFEAHARRLS--PTPTAYADLMVRLTGA-----------KGAKVLDPACGFGS 172 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 GQ+++P+T + + + +++ + Sbjct: 173 L--------------LLAAAATRARGQDVDPDTARIAGIRLRLHGADAE--------VYA 210 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 L D F G+ L +PPF ++ ++ V R+ GLP + + + Sbjct: 211 ADALRADAFAGRLADVVLCDPPFNERGWGHEELVG-------DARWEYGLPPRGESELAW 263 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H ++ GG A+++ + SG IR LL + A+ L Sbjct: 264 VQHCLAHVKP----GGAVAVLMPGAA---AGRRSG-KRIRANLLRAGALRAVCTLAPG-- 313 Query: 399 FRTNIATYLWILSNRKTEERR-GKVQLINAT 428 T LW+L+ + E R V + + T Sbjct: 314 ------TDLWLLTRPEPERRAPATVLIADTT 338 >gi|50119533|ref|YP_048700.1| restriction enzyme subunit subunit [Pectobacterium atrosepticum SCRI1043] gi|49610059|emb|CAG73499.1| restriction enzyme alpha subunit [Pectobacterium atrosepticum SCRI1043] Length = 623 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 60/346 (17%), Positives = 115/346 (33%), Gaps = 70/346 (20%) Query: 130 AGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 G+ +I + V+ Y + ++ + + +TP + L Sbjct: 268 GGVFKEIIRRICENVWPYINIYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPGHISELF 326 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHG 244 + G + D GTGGFL AM H+ + + G Sbjct: 327 ----------SLLANVGPESRVLDICAGTGGFLISAMQHMLKKAVTEAQRQDIRRNRLIG 376 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPP 300 E P+ A+ + M++R D N+ Q S D G + + + NPP Sbjct: 377 IENSPKMFALAASNMILRG-------DGKANLHQASCF-DDAIIRSVKGMKPNVGMLNPP 428 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAA 357 + + SD + F+ + N L+ G A Sbjct: 429 YAQS--------------------------KSDAELHELYFVKQMLNCLQPGSIG---IA 459 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 IV S + +R LL++ ++A++++P +LF + T + + + E Sbjct: 460 IVPMSCAISPN-------PVREELLKHHTLDAVMSMPPELFNSVGVVTCIMVWIAGQPHE 512 Query: 418 RRG-KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460 K D + +++G+ D R + + +Y +RE Sbjct: 513 YSDRKTWFGYWRDDGFVKTKHKGRIDINHRWPDIRDRWVAMYRNRE 558 >gi|124009161|ref|ZP_01693843.1| N-6 DNA methylase [Microscilla marina ATCC 23134] gi|123985259|gb|EAY25186.1| N-6 DNA methylase [Microscilla marina ATCC 23134] Length = 733 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 56/359 (15%), Positives = 110/359 (30%), Gaps = 69/359 (19%) Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 ++ +E + + + TPR++V +L + + Sbjct: 313 INLKDTDLDSKGKAFETFMGSY---FRGDFGQYFTPRNIVQFIINVLPITNHSR------ 363 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVA----------------------DCGSHHKIPPILVP 242 + D +CG+GGFL + + D + Sbjct: 364 ----VLDTSCGSGGFLLYTLEKIRKQADEYFENQKGDPENDIAEGADHHRYWHDFVSKKL 419 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD----------LFTGKRF 292 G E+ + M+I D N+ L KD F F Sbjct: 420 FGIEINEQIARTAKMNMIIHN-------DGQTNVIAADGLLKDEALRQRSHNREFKYNSF 472 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------DGSMLFLMHLANK 345 + ++NPPFG ++ + A ++K G + +LF+ Sbjct: 473 DFIVTNPPFGSVVKQLEKAYLHQYKLGNKDVSWLDTKNSAVQGRANQSTEVLFIEQCWYF 532 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L+ GG AIV+ L N +R + E I A+V++P F T Sbjct: 533 LKE----GGTLAIVVPDGILTNSSLQY----VRDRIEEWYRIVAVVSMPQTAFAHTGAGV 584 Query: 406 YLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 +L +K ++ + + + + + + +++ I+ + EN Sbjct: 585 KSSVLFLKKWDKATTESLQSIKDRLKNNIKTTHHYEATIERIEKEKKDIIKAHRGFENT 643 >gi|329937004|ref|ZP_08286633.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces griseoaurantiacus M045] gi|329303611|gb|EGG47496.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces griseoaurantiacus M045] Length = 724 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 134/421 (31%), Gaps = 61/421 (14%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E S + + TP + L LL PG + DP CG+G L A Sbjct: 174 EDSGASGAYRTPAPLADLLARLL-----------PGAPTRVLDPACGSGSLLAAAA---- 218 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 +GQ++ P + + E D + ++ +L D F Sbjct: 219 -------RRGARELYGQDVLPVQARRSAVSLALTASEDDTKVT----VRAADSLRADAFP 267 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 L NPP+G + + R+ G+P ++ + ++ H L Sbjct: 268 ELLADAVLCNPPYGVRDWGHD-------ELAYDSRWAYGVPARAESELAWVQHALAHLTP 320 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GG AA++L + +R L+ + + A++ALP ++ +W Sbjct: 321 ----GGHAALLLPPATASRASGR----RVRAELVRSGALRAVLALPVGAAVPLHVPLQIW 372 Query: 409 ILSNRKTEER-RGKVQLINATDLWTS-----------IRNEGKKRRIINDDQR-RQILDI 455 +L + R V ++ + R G + +++ ++ + L Sbjct: 373 LLRRPEPGGPDRTSVLFVDTAETTMPAGPGDTGAAPRTRGSGGRAALLDWERISDRALRA 432 Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSF 514 + + + + R + V+ L L L R A++ KLS ++ Sbjct: 433 WHAFTDSP--DTFEGEPGVARAVGVVDLLDDMVDLTPARLVRASRAEVDPAKLSAEIEAS 490 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR----KDPR 570 LD+++ + + + ++ + + +D Sbjct: 491 RLDLVEASESLGRAADYDGWNAADGSARDWRTATVSDLARGGALTLLRTVPEGARGRDEE 550 Query: 571 A 571 Sbjct: 551 G 551 >gi|329941157|ref|ZP_08290436.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045] gi|329299688|gb|EGG43587.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045] Length = 680 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 100/302 (33%), Gaps = 52/302 (17%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E L+ R +TP + L L G RT+ DP CGTG Sbjct: 169 FEFLLGRHLDANPRQYT--LTPAGLADLMAELA------------GPARTVLDPACGTGA 214 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L P +GQ+ PE A + L Sbjct: 215 LLRAL-----------GRAPEQSLYGQDAAPELAA-------LAALRLALHTRALVRAAA 256 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G +L D R L +PPF ++ + + R+ GLP ++ + + Sbjct: 257 GDSLRADAHESLRADVVLCHPPFNERNWGHE-------ELAYDPRWEYGLPARTESELAW 309 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H +L+ GG A +++ + SG IR LL + A+VALP Sbjct: 310 VQHALARLKD----GGSAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVVALPAGAA 361 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + +LW+L + +V L++ R + R +LD + Sbjct: 362 PPHGVPLHLWVLRRPDRAPAQPRVLLVDTGAAAAEGRGGPDWQ-----AVREAVLDAWHE 416 Query: 459 RE 460 + Sbjct: 417 FD 418 >gi|57242478|ref|ZP_00370416.1| type I restriction-modification system, M subunit, putative [Campylobacter upsaliensis RM3195] gi|57016763|gb|EAL53546.1| type I restriction-modification system, M subunit, putative [Campylobacter upsaliensis RM3195] Length = 695 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 67/382 (17%), Positives = 117/382 (30%), Gaps = 74/382 (19%) Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE---- 128 + +F S+ + + + +++ + + + F I L Sbjct: 194 KRNPAEAFSEFSKIIFTKMMDEKAKTDIKYKLEHYEFQKNRDEDKFALEKRIKGLYEKYK 253 Query: 129 -------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 A + + +N GI + + I+++ ++ F A Sbjct: 254 KKDSNVFDNALILDADEIKFLVENLEGI--GLSKIELDIKGEIFQNFLKDF---FKGKAG 308 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +VV + L + DP+CG+GGFL + ++ + K Sbjct: 309 QFFTPFNVVRFVVGCFDITQNDL----------VLDPSCGSGGFLLQTLQYMQEKSKKLK 358 Query: 236 IPPILVP---------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---- 282 +G E+ M+I D N+ L Sbjct: 359 KKAQKRFWHSFAEKNLYGIEINGGISQTAKMNMIIH-------DDGHTNVITADGLDSFE 411 Query: 283 ----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSM- 336 + F FH+ +NPPFG K E F + K S + Sbjct: 412 NFIRKNNKFQKNTFHFIFTNPPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLS 471 Query: 337 ------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 LFL L+ GG A VL L N +R +LLE + A Sbjct: 472 GQKSEILFLERYFEFLKE----GGIVACVLPDGILTNSSLQ----NVRDYLLERFYLLAS 523 Query: 391 VALPTDLF--FRTNIATYLWIL 410 +LP F + + + + +L Sbjct: 524 FSLPQHTFSNYGAGVKSSILVL 545 >gi|237753064|ref|ZP_04583544.1| N-6 DNA methylase [Helicobacter winghamensis ATCC BAA-430] gi|229375331|gb|EEO25422.1| N-6 DNA methylase [Helicobacter winghamensis ATCC BAA-430] Length = 694 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 67/386 (17%), Positives = 110/386 (28%), Gaps = 80/386 (20%) Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNAKAIFEDFDFSSTIARLE- 128 + +F S+ + + Y F N + F I L Sbjct: 191 KRNPAEAFSEFSKIIFTKIMDEKIAEYDADYKLKYYEFQKNRDE--DKFALEKRIKGLYQ 248 Query: 129 ----------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 A + + +N GI + +++ F Sbjct: 249 KYKEKDSNVFDNALILDADEIKFLVENLEGI--SLSETDLDIKGKVFQKF---FADFFKG 303 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + TP ++V D L + DP+CG+GGFL + ++ + Sbjct: 304 TAGQYFTPLNIVRFMVECFDIRQDDL----------VLDPSCGSGGFLLQTLQYMQEKSK 353 Query: 233 HHKI----------PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 K +G E+ M+I D N+ L Sbjct: 354 KLKKKEAQKRFWHSFAEKNLYGIEISGGISQTAKMNMIIH-------DDGHTNVITADGL 406 Query: 283 --------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISD 333 + F F++ +NPPFG K E F + K S Sbjct: 407 DSFENFIRKNNKFQKNTFNFIFTNPPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSP 466 Query: 334 GSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + LFL L+ GG A VL L N +R +LLE Sbjct: 467 KDLSGQKSEILFLERYFEFLKE----GGIVACVLPDGILTNSSLQ----NVRDYLLERFY 518 Query: 387 IEAIVALPTDLF--FRTNIATYLWIL 410 + A +LP F + + + + +L Sbjct: 519 LLASFSLPQHTFSNYGAGVKSSILVL 544 >gi|300934054|ref|ZP_07149310.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100] Length = 211 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 22/190 (11%) Query: 13 NFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70 +W A++L + +L L E E R V K A + + Sbjct: 11 ATLWSAADELRANSKLTPVQYRDPVLGLVFLAYAENRFETVRGEVEAKSSARNPATVAD- 69 Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFEDFDFSST 123 A Y E LS L ++ I + K + Sbjct: 70 ---YKAKSVLYVPDESRLSHLVGLPEGADIGKATDEAIKAIEEANPELKDVLPR-----G 121 Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +LE++ L ++ + F+ P + IYE + F ++ +G ++ TP + Sbjct: 122 YQKLERS-TLIELLRLFA---PLPTQLAGDAFGFIYEDFLSNFAAQEGKGGGEYFTPYSI 177 Query: 184 VHLATALLLD 193 V L +L Sbjct: 178 VRLIVEILQP 187 >gi|323481372|gb|ADX80811.1| Type I restriction modification system protein HsdMI [Enterococcus faecalis 62] Length = 181 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 11/168 (6%) Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 AIVL LF G A E IR+ LLE+ I A++ +P +LFF T+I T + +L + Sbjct: 1 MAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQ 57 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFG 474 V I+A+ + GK + ++++ ++IL+ Y R++ + ++ + + Sbjct: 58 NR---DVLFIDASREFVK----GKNQNKLSEENIQKILENYAERKDVEKYAHLATFDEIK 110 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + P + ++ + + +K+ Q ++L+ + Sbjct: 111 ENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 158 >gi|257064716|ref|YP_003144388.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] gi|256792369|gb|ACV23039.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] Length = 650 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 69/441 (15%), Positives = 143/441 (32%), Gaps = 59/441 (13%) Query: 94 TNTRNNLESYIASFSDNA-------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 + LE + ++ + + E + L + + + I + Sbjct: 225 SAIGEVLEDLLDGSNNKQTKIRLLKRDVLE----DQKVRALTQEDWIEVLTDILMNIYRY 280 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 D + I TP + L + Sbjct: 281 IDADSSEGQDILNLFFITFNKYVGKADKNQAFTPDHITDFMAQLTEVTWKDV-------- 332 Query: 207 RTLYDPTCGTGGFLTDAM-NHVA---------DCGSHHKIPPILVPHGQELEPETHAVCV 256 + D CG+G FL AM +A + G E E + + + Sbjct: 333 --VLDECCGSGSFLVQAMVKELADARLGCTEAEFRERADEIKQHHIFGIENEEKAYGLST 390 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 MLI D + N++ GS K F + L NPP+ K + +++ Sbjct: 391 TNMLIHG-------DGNSNVEFGSCFDKRQFIADAKPTVILMNPPYNAKPRTIPASYKRD 443 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPLFNGRAGSGE 374 E R G P ++F+ +L++ + G R A++L ++ + G S Sbjct: 444 WTASE--RNGKSDPTKG---LVFVKYLSDIAKAEDWDGVRLAVLLPMAAAIGTGTRLSSV 498 Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 E+ LL ++ +EA+ +LP ++F+ ++ + + ++ + Sbjct: 499 KEM---LLVDNTLEAVFSLPAEIFYPGASVQACCMLFTLNRSHYEADG-CTPKKQTFFGY 554 Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR--PLRMSFIL 490 R++G KR+ + ++ + + + ++ ++L YR + S Sbjct: 555 YRDDGFVKRKGLGR------VEQFDADGHSEWKKILKKWLDLYRNKTIEAGYSAMQSVTS 608 Query: 491 DKTGLARLEADITWRKLSPLH 511 LA D + KL+ Sbjct: 609 SNEWLAEAYMDTDYTKLAEND 629 >gi|21221543|ref|NP_627322.1| hypothetical protein SCO3104 [Streptomyces coelicolor A3(2)] gi|10241787|emb|CAC09545.1| hypothetical protein SCE41.13c [Streptomyces coelicolor A3(2)] Length = 679 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 104/303 (34%), Gaps = 50/303 (16%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE L+ R +TP + L L G RT+ DP CGTG Sbjct: 168 AYEFLLGRHLDANPRQYT--LTPDPLADLMAELA------------GPARTVLDPACGTG 213 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A P +GQE +P A + L D + I Sbjct: 214 SLLRAAA---------ATTRPGQELYGQESDPALAA-------LTALRLALSTDATVRIA 257 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L D TG R L +PPF ++ + R+ G P ++ + Sbjct: 258 AGDSLRADARTGLRADAALCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELA 310 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H ++ GG +++ + SG +R LL + A++ALP Sbjct: 311 WVQHALARVRD----GGTVVVLMPPAAASR---RSG-RRVRADLLRRGALHAVIALPVGA 362 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 N+ +LW+L + + V L + R R + R +LD + Sbjct: 363 APPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDAWT 417 Query: 458 SRE 460 + + Sbjct: 418 AFD 420 >gi|325919626|ref|ZP_08181635.1| type I restriction-modification system methyltransferase subunit [Xanthomonas gardneri ATCC 19865] gi|325549874|gb|EGD20719.1| type I restriction-modification system methyltransferase subunit [Xanthomonas gardneri ATCC 19865] Length = 617 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 68/344 (19%) Query: 131 GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 G+ +I V+ Y + ++ + + +TPR V L Sbjct: 264 GVFKEIISRICENVWPYINVYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHVAELF- 321 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQ 245 + + D GTGGFL AM H+ + G Sbjct: 322 ---------SLIANVSPESKVLDICAGTGGFLISAMQHMLKKAVTEEERTDIKKNRLIGI 372 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFG 302 E P+ A+ + M++R D N+ Q S + + + N P+ Sbjct: 373 ENNPKMFALAASNMILRG-------DGKANLHQASCFDDAVIKAIQKMKPNVGMLNQPYA 425 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAAIV 359 + SD + F+ + + LE G AIV Sbjct: 426 QS--------------------------KSDAELHELYFVKQMLDCLEPGSTG---IAIV 456 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 SS + + IR L+ + ++A++++P +LF+ T + + ++ + Sbjct: 457 PMSSAI-------KPNPIRDELMAHHTLDAVMSMPQELFYPVGTITCVMVWVAKRPHAKS 509 Query: 420 G-KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460 G K D + +++G+ ++ R + +++Y +RE Sbjct: 510 GRKTWFGYWRDDGFIKTKHKGRIDQQGTWPAIRDRWVEMYRNRE 553 >gi|291276745|ref|YP_003516517.1| putative adenine-specific DNA-methyltransferase [Helicobacter mustelae 12198] gi|290963939|emb|CBG39776.1| putative Site-specific DNA-methyltransferase (Adenine-specific) [Helicobacter mustelae 12198] Length = 650 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 63/451 (13%), Positives = 137/451 (30%), Gaps = 78/451 (17%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNT 96 LL+ E R+ Y + + + + F N + L L + Sbjct: 179 LLKDASDLHEDLRN-----YGNLRDTEKPIVVSGILLALEEIRFKN---FDLERLNADGQ 230 Query: 97 RNNLESYIASFSDNAK-----------AIFEDFDFSSTIARLEK-AGLLYKI-CKNFSGI 143 +++ + DN K + F ++ + L K K+++ Sbjct: 231 KSDGAKIYGAIVDNLKRANVGPDVKKDKLLSQFSIIKDAPKINEVNSTLGKTPLKHYAEF 290 Query: 144 -------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + ++ Y + + + +TP+ + L L D Sbjct: 291 LYKRIYQNIKYTQTSEDILGRFYGEFMS-YSGGDGQTLGIVLTPKHICELFCDLAKLKPD 349 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253 ++DP CGT GFL AM+++ ++ G E + + Sbjct: 350 DR----------VFDPCCGTAGFLIAAMHNMLLQVTNDTQKQEIKENQLFGIEERADMFS 399 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 + M++R + N DL K + NPP+ + + + E Sbjct: 400 IATTNMILRG----DGKSNLDNKDFLKQNPPDLQKDKAATVGMMNPPYSQGSKANPALYE 455 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 L GGR +++ S + Sbjct: 456 IAFSE--------------------------HLCDSILKGGRVIVIVPQSAM--TGKSKE 487 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWT 432 E I+ +L+ +E ++ L + F+ + I ++ + IN D + Sbjct: 488 EKAIKANILKKHTLEGVITLNKNTFYGIGTNPCIAIFKAGIPHQKDKICKFINFENDGFV 547 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 +++G I D++ +L ++ + + Sbjct: 548 VQKHKGLVETIHAKDKKAHLLKVWRDEKEAE 578 >gi|326202976|ref|ZP_08192843.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782] gi|325987053|gb|EGD47882.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782] Length = 737 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 72/463 (15%), Positives = 141/463 (30%), Gaps = 63/463 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 A L + + + L +E + F + TPR++V Sbjct: 268 NAKELETVVGYLAKVNLT--ATDLDSKGKAFETFMGSF---FRGEFGQYFTPRNIVKFIV 322 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------------- 234 L ++++ + D +CG+GGFL A++ V + Sbjct: 323 ESLPITNESV----------VLDTSCGSGGFLLYALDKVRNIADQKAEEGYFSKDSKEHW 372 Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----KDLF 287 +G E+ M+I + ++ LS F Sbjct: 373 NFWHDFAEKRLYGVEISESIARTAKMNMIIHD-DGHTNVVAFDGLEGIDKLSETTKNPGF 431 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM----------- 336 RF + ++NPPFG + + ++ + G K+ + + Sbjct: 432 KKNRFDFIITNPPFGSTIKYSEHRYIEDFELGCKSI-DWIEAKLKNVDLNSPRDNQSSEI 490 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LF+ L GG AIV+ L S +R W+ E I A+V++P Sbjct: 491 LFIERCHQYLHD----GGILAIVIPDGIL----TNSSMQYVRDWIEEKYRIIAVVSMPQT 542 Query: 397 LFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 F + + + L ++ + + T + E + +++ IL Sbjct: 543 AFTANGAGVKSSVLFLYKLSEKDTATIRAIKKSLQDKTFDKPEYGAAITALEQEKQTILK 602 Query: 455 ----IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 E S + R G + R L + E+ +W+K + Sbjct: 603 RGDVTKQEMEEAFVSHIEALRAQGNHTKDIERQLTKGHKEKVKEYEKSESFQSWKKETTE 662 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + + +K + Y + I A+ + A+ Sbjct: 663 EFNERISNIKENLSDEYTGLVKDKLNNYPIFMAIAEDIGYDAT 705 >gi|297157211|gb|ADI06923.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1] Length = 706 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 94/274 (34%), Gaps = 41/274 (14%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L R + ++TPR + L LL + + ++ DP CGT Sbjct: 165 LAERLLEDTGGT-GTYLTPRPLAALMARLLT-------ESAGAFPASVLDPACGT----- 211 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + HGQ++ A + + + + ++ G + Sbjct: 212 ------GSLLAAAASAGASELHGQDVLVAQAAQAAVRLRL------NAPEAAISVHTGDS 259 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L D F G L NPP+G + D R+ G+P + + ++ H Sbjct: 260 LRSDAFKGLTADAVLCNPPYGVRDWGHDD-------LAYDQRWAYGVPPKGEPELAWVQH 312 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L GRA +++ + + IR L+ + + A+V+LP Sbjct: 313 CLAHLTPR----GRAVLLMPPAV----AERTAGRRIRAQLVRDGALRAVVSLPQGAATPL 364 Query: 402 NIATYLWILSNRKT-EERRGKVQLINATDLWTSI 434 +I +LW+L E G V L++A + Sbjct: 365 HIGLHLWVLERPDPQAEAPGTVLLVDAAAENRDL 398 >gi|288926003|ref|ZP_06419932.1| putative type I restriction-modification system, M subunit [Prevotella buccae D17] gi|288337223|gb|EFC75580.1| putative type I restriction-modification system, M subunit [Prevotella buccae D17] Length = 399 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 75/406 (18%), Positives = 127/406 (31%), Gaps = 97/406 (23%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V YE ++ + + + A F TPR+++ +L P + DP Sbjct: 25 DVKGTAYETIV---SNTLKQEAGQFFTPRNIIKCMVEML----------DPDQNCRVLDP 71 Query: 213 TCGTGGFLTDAMNHVA-----------------------DCGSHHKIPPILVPHGQELEP 249 CG+GGFL ++HV + + + G + +P Sbjct: 72 ACGSGGFLVMVLDHVRRKIAKNLYPDLDEVRLEAKYNSPEVDDAVREYAEKMIFGFDFDP 131 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------------------LFTGK- 290 + M++ D NI ++L + Sbjct: 132 DLKKAARMNMVMAG-------DGHSNIYNINSLDYPYGSKPDVPLIAEAVNDSIKHSADK 184 Query: 291 -------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 +F +NPPFG K E RF + +L Sbjct: 185 DFHFETPASNAQGKFDMIFTNPPFGSKV---------EVDTEISTRFEL---NSTAPEVL 232 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ N L+ GG+ IVL L N S +R W+L + + A V LP + Sbjct: 233 FIEACYNFLKP----GGKMGIVLPDGILGNPNTES----VRLWILRHFKLLASVDLPVET 284 Query: 398 FFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 F + L L + EE ++ + + N GK RR + ++ Sbjct: 285 FLPQVGVQASLLFLQKKTDEEMLIPIEDEDYNVFMAIVENVGKDRRGVPVYEKDDEGSEL 344 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502 + E+ K + + R R++ L K A L+ I Sbjct: 345 L-FEHTKKWLTYADNGREIVKSRKERVKRLADDLPKVAQAYLQFKI 389 >gi|145641588|ref|ZP_01797165.1| N-6 DNA methylase [Haemophilus influenzae R3021] gi|145273635|gb|EDK13504.1| N-6 DNA methylase [Haemophilus influenzae 22.4-21] Length = 676 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 112/337 (33%), Gaps = 79/337 (23%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 F I+ + +M +Y + ++ + +TP V L +L Sbjct: 326 NIFKSIDGFGGHID--MMGELYSEFL-KYALGDGKELGIVLTPPYVTKLMAQILGINSSN 382 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------PILVPHGQ 245 + D G+ GFL AM + D G Sbjct: 383 R----------VMDLATGSAGFLISAMELMIDDAQKQFGKGTTKANELITQIKQNQLLGV 432 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGK 303 EL E + + M++R D S I++GS ++ FT + L NPPF Sbjct: 433 ELNAEMYTLAATNMILRG-------DGSSKIEKGSAFNRPDSLFTNFKADRILLNPPFSY 485 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 M F+ + +K+E GG AI++ S Sbjct: 486 DENG----------------------------MPFIAYGLDKMEK----GGLGAIIIQDS 513 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 +G+A S + +L+ + A + +PTDLF + T ++I K + V Sbjct: 514 AG-SGKAVSTN----QKILKKHSLLASIKMPTDLFQPMAGVQTSIYIFEAHKPHDIDNIV 568 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + I+ + N+G KR + + ++ Y Sbjct: 569 KFIDFS-------NDGYKRTERSLSEIDHPVERYADM 598 >gi|261364423|ref|ZP_05977306.1| N-6 DNA Methylase family protein [Neisseria mucosa ATCC 25996] gi|288567330|gb|EFC88890.1| N-6 DNA Methylase family protein [Neisseria mucosa ATCC 25996] Length = 720 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 64/372 (17%), Positives = 112/372 (30%), Gaps = 69/372 (18%) Query: 82 NTSEYSLSTLGSTNTRNNLESYIASF-SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 N Y + + + E+ + N + +F+ RL+ A + + Sbjct: 235 NGEPYDFQIILTADEGAGSETQQQKNRAQNTQELFKRVTGLYEEGRLKDAEVFKDNIRLT 294 Query: 141 SG---------IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 +++ +E + F + TPR +V +L Sbjct: 295 PERVRTIVGYLQDVNLSKTDLDSKGRAFETFMDSFFRGS---FGQYFTPRRIVKFIVDVL 351 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------------DCGSHHKIPPI 239 D + D +CG+GGFL A++ V D H Sbjct: 352 PISHDHF----------VLDTSCGSGGFLLHALDKVRREADEYYSEGSADHFRHWHDFAE 401 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----------FTG 289 +G E+ + M+I D NI L D F Sbjct: 402 KKLYGIEINEQISRAAKMNMIIH-------DDGHTNIITADGLLSDKALQNQSNNLGFKY 454 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------DGSMLFLMHL 342 F + ++NPPFG ++++ A + G +LF+ Sbjct: 455 NHFDFIITNPPFGSTVKQNEQAYLATYGFGVSDVSWLDTKNSGVQNRESQKTEILFIEQC 514 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT- 401 N L+ G AIV+ L N +R + + I A+V+LP F T Sbjct: 515 RNFLKE----NGYLAIVIPDGILTNSSLQY----VRDQIETDFRIIAVVSLPQTAFTATG 566 Query: 402 -NIATYLWILSN 412 + + + L Sbjct: 567 AGVKSSVLFLRK 578 >gi|159030700|emb|CAO88373.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 81 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M F +FIW A+ + FK + VILPFT+LRR +C LEPT+ V Y Sbjct: 1 MNNFGEK----VSFIWSIADLIRDTFKRGKYQDVILPFTVLRRFDCVLEPTKEEVLAAYN 56 Query: 61 AFGGSNIDLES-FVKVAGYSFYNT 83 + +L+ K +G++FYN Sbjct: 57 HYKDKLDNLDPLLCKKSGFAFYNP 80 >gi|282932025|ref|ZP_06337486.1| putatIve type i restriction enzyme hindviip m protein [Lactobacillus jensenii 208-1] gi|281303852|gb|EFA95993.1| putatIve type i restriction enzyme hindviip m protein [Lactobacillus jensenii 208-1] Length = 204 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 19/214 (8%) Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + ++ H+ +KL G+A VL++ L E IR+ LLE D I+AIVALP Sbjct: 1 NYAWIEHIISKLNPD----GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALP 54 Query: 395 TDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 +F+ T I LW + K +RRG+ I+A +L + R +D+ + Sbjct: 55 DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMVDRT---HREFSDEDIK 111 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSP 509 +I D Y + + D G+ +I K+ + ++L L Sbjct: 112 KIADTYHAYRGTNEQKYEDMA--GFCKIAKLDEIAKNDYVLTPGRYVGLVEQ---EDDGE 166 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543 ++ + + +Q + +K+ +K Sbjct: 167 PYEVKMARLTAELKKQFEESDRLQDEIKDVLKEL 200 >gi|283956448|ref|ZP_06373928.1| LOW QUALITY PROTEIN: hypothetical protein C1336_000250331 [Campylobacter jejuni subsp. jejuni 1336] gi|283792168|gb|EFC30957.1| LOW QUALITY PROTEIN: hypothetical protein C1336_000250331 [Campylobacter jejuni subsp. jejuni 1336] Length = 1080 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 75/468 (16%), Positives = 151/468 (32%), Gaps = 27/468 (5%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + +S + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ F ++ + R +F Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNLAELEAFKDYRNAFRQTSDYKK 734 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L + + L +L + + + Y + I Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782 >gi|157415312|ref|YP_001482568.1| hypothetical protein C8J_0992 [Campylobacter jejuni subsp. jejuni 81116] gi|157386276|gb|ABV52591.1| hypothetical protein C8J_0992 [Campylobacter jejuni subsp. jejuni 81116] gi|315932187|gb|EFV11130.1| type I restriction modification DNA specificity domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 1190 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 75/468 (16%), Positives = 151/468 (32%), Gaps = 27/468 (5%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 241 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 300 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + +S + Sbjct: 301 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 354 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 355 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 413 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 414 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 471 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 472 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 525 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 526 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 585 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ F ++ + R +F Sbjct: 586 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNLAELEAFKDYRNAFRQTSDYKK 645 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L + + L +L + + + Y + I Sbjct: 646 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 693 >gi|167767097|ref|ZP_02439150.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1] gi|167711072|gb|EDS21651.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1] gi|291559568|emb|CBL38368.1| Type I restriction-modification system methyltransferase subunit [butyrate-producing bacterium SSC/2] Length = 573 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 78/451 (17%), Positives = 159/451 (35%), Gaps = 78/451 (17%) Query: 125 ARLEKAGLLYKICK--------NFSGIELHPDTVPDRVMSNIY--EHLIRR---FGSEVS 171 +L+ L + F + +++ Y E+L+ Sbjct: 52 NKLQNTKELSNYVETELSFEQSLFLKECIGNLWSVAIEIAHDYTVENLLATILWMPISNR 111 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP +V+LAT +L ++ + D CG G FL +A Sbjct: 112 RSEPNSETPESIVNLATRILNINNE-----------KVADFCCGVGNFLINA-------- 152 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +G E+ + + + D ++ I+QG+ DL K+ Sbjct: 153 --IEQDKNSKYYGIEINTHYKEIS-------NIRLNLISDYTE-IEQGTVF--DLNMDKK 200 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + P+ K + KE K E P + K+ LF+M++ L+ Sbjct: 201 FDKIFCDYPWNI--LKHNTGINKE-KLQEFESVVPEIKKVVKSDWLFIMNVERHLKS--- 254 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+A ++ ++ +NG +IR L+ LIEA+++LP +L+ T I + +LS Sbjct: 255 -NGKAVVIATNGTTWNGGID---KKIRERFLKMGLIEAVISLPANLYSTTAIPVSMIVLS 310 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 V++++A + + G+++ +++++ QI+ + + Sbjct: 311 KS-----NKMVRMVDARS----MASVGRRQNVLSNETIDQIVHMMTEDTENSKCVTFEEI 361 Query: 472 T----------FGYRRIKVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILK 520 F Y +V + ++ T A+++A I L + D Sbjct: 362 EKEDFAINPSRFIYTEAEVENGIPFGNVITNITRGAQVKASI----LDEMVSDNPTDYQY 417 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 M+ I + + + VK Sbjct: 418 LMLANIQNGIINDDLPFIKSIDKKLEKYCVK 448 >gi|160935440|ref|ZP_02082822.1| hypothetical protein CLOBOL_00335 [Clostridium bolteae ATCC BAA-613] gi|158441798|gb|EDP19498.1| hypothetical protein CLOBOL_00335 [Clostridium bolteae ATCC BAA-613] Length = 389 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 63/370 (17%), Positives = 122/370 (32%), Gaps = 71/370 (19%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +M +Y + ++ + +TP V + + +L +++ + D Sbjct: 58 DIMGEMYSEFL-KYAFGDGKELGIVLTPPYVTKMMSQILDIDENS----------KVMDL 106 Query: 213 TCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQELEPETHAVCVAGML 260 G+ GFL AM + + G EL E + + M+ Sbjct: 107 ATGSAGFLISAMKLMIECVEQKYGKNTTKANKKIDEIKQQRLLGVELNAEMYTLASTNMI 166 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +R D S NI++GS+ + + + L NPPF K Sbjct: 167 LRG-------DGSSNIRKGSSFDEPPELYRNFNANALLLNPPFTFKEN------------ 207 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 GLP FL ++ GG+AAI++ S S Sbjct: 208 --------GLP--------FLKFGLENMK----IGGKAAIIIQDSAGSGRGIISC----- 242 Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRN 436 + +L + + A + +P DLF + T ++IL + K + + +V+ I+ + Sbjct: 243 KEILSKNQLVASIKMPVDLFLPMAGVQTSIYILEHTGKEHDYKKQVKFIDFRNDGYKRTK 302 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 G + R I+++Y + S L + R + Sbjct: 303 RGIYELDSPSQRYRDIVEVYKNGITANVSSELWDIKNQVVMDVISRNGDDWNFEQHQKID 362 Query: 497 RLEADITWRK 506 + + ++K Sbjct: 363 LVPTEEDFKK 372 >gi|315638462|ref|ZP_07893639.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21] gi|315481453|gb|EFU72080.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21] Length = 641 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 65/414 (15%), Positives = 136/414 (32%), Gaps = 56/414 (13%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 ++ + G ++I+ E + F+ S + L + ++ AK Sbjct: 174 YIKNEVKKRGVNHINDELVKTLKD--FWKISS---EDAIRASIERTLSDLLDGSNNKAKK 228 Query: 114 I--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 I + + I +L+ + + + I + DT + + I Sbjct: 229 IELLQKNVLNDQKIKKLKSNDWIEILTTILTDIYKYIDTESEEGQDILNLFFIAFNKYTG 288 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------ 224 TP + ++ + + D TCG+G FL AM Sbjct: 289 KADKNQAFTPDHITDFMCRVVGVD----------RTKRVLDITCGSGSFLVQAMVKELSD 338 Query: 225 ----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + + +G E+E + + + MLI D + NI+ GS Sbjct: 339 CKRGKTEKEAKELMEKVKKDNIYGIEVEEKAYGLATTNMLIHG-------DGNSNIEFGS 391 Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 K F L NPP+ K + + + G G P ++F+ Sbjct: 392 CFEKKEFIKAANPDIILMNPPYNAKPISIPEYYKNKWSKGAKE--GKEDPTKG---LVFI 446 Query: 340 MHLANKLELPPNGG---------GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 +L++ ++ + A++L S + S I+ +LEN+ +EA+ Sbjct: 447 QYLSDIIKEINEEREAKNEVRKEVKLAVLLPMSAAI--GSKSDIKNIKEAMLENNTLEAV 504 Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 LP ++F+ +++ + + K + + +G K++ Sbjct: 505 FTLPAEVFYPGASVSACCMVFTLGKPHINSDG---TTNETFFGYFKEDGFKKKK 555 >gi|307747955|gb|ADN91225.1| Type I restriction modification enzyme [Campylobacter jejuni subsp. jejuni M1] Length = 1279 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 75/468 (16%), Positives = 151/468 (32%), Gaps = 27/468 (5%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + +S + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ F ++ + R +F Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNLAELEAFKDYRNAFRQTSDYKK 734 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L + + L +L + + + Y + I Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782 >gi|255021987|ref|ZP_05293995.1| Type I restriction-modification system, M subunit, putative [Acidithiobacillus caldus ATCC 51756] gi|254968623|gb|EET26177.1| Type I restriction-modification system, M subunit, putative [Acidithiobacillus caldus ATCC 51756] Length = 799 Score = 98.5 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 80/480 (16%), Positives = 122/480 (25%), Gaps = 137/480 (28%) Query: 42 RRLECALEPTRSAVREKYLAFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RRL+ E R+ R+++ +I + G +F S+ + + + Sbjct: 137 RRLKEIRESLRAFNRKEFQDLLFVCHSILRDVHKMDPGRAFDTISKILFIKMYVERSGQH 196 Query: 100 ---LESYIAS-------FSDNAKA-IFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHP 147 YI +FE L + L + F I Sbjct: 197 GTFTTDYIDRRAAVRLPTDPAVHDGLFEQTKAYYKADDLFAASDKLDISEETFRRIVKQL 256 Query: 148 DTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + D + +E + + F TPR VV LL + Sbjct: 257 ERFDLSKTGDDIKGLAFEKFLG---TTFRGELGQFFTPRPVVEFMVDLL----------N 303 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------------------- 241 P + DP G+GGFL A HV Sbjct: 304 PREGERICDPASGSGGFLIRAFEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEE 363 Query: 242 ------------------------------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271 +G + EP M++ D Sbjct: 364 AFSRLNRELLPSDDNNKPIDTRVGRLAWQCIYGTDAEPRAARTAKMNMIMHG-------D 416 Query: 272 LSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR------- 323 I L + G RF L+NPPFG +D+ + Sbjct: 417 GHGGIHYHDGLLDINGIFGGRFDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCR 476 Query: 324 ----------------------------FGPGLPKISD-GSMLFLMHLANKLELPPNGGG 354 F G K + ++F+ N L+ GG Sbjct: 477 EGGYGPAWEESHQSLLAAAAARKPILDLFEIGKGKKNRPTELIFVERCLNLLKP----GG 532 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412 R IVL L N +RRW + A+V+LP F + L L Sbjct: 533 RMGIVLPDGNLNNPSLAW----LRRWAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRK 588 >gi|301513071|ref|ZP_07238308.1| putative restriction-modification protein [Acinetobacter baumannii AB058] Length = 427 Score = 98.5 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 27/181 (14%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ + + +E+ +++ + + ++ TPR + L+ +P Sbjct: 257 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 305 Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +YDP CGTGGFLT+A +H+ D S G+E+ + M++ Sbjct: 306 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 364 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D I Q TL + + + ++N PF +K K KN Sbjct: 365 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAKNDGD 415 Query: 322 G 322 G Sbjct: 416 G 416 >gi|325577622|ref|ZP_08147897.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae ATCC 33392] gi|325160367|gb|EGC72493.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae ATCC 33392] Length = 615 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 65/385 (16%), Positives = 128/385 (33%), Gaps = 54/385 (14%) Query: 98 NNLESYIASFSDNA--KAIFEDFDFSSTIARLEKAGLLYKI-CKNFSGI------ELHPD 148 N + + I N K + + ++ + + + F I ++ P Sbjct: 212 NQIRTGIEGILTNLLNKDLNKAEKLVILKNKVIDSQDIRDLKIDEFKNILRTIETKILPY 271 Query: 149 TVPDRVMS-NIYEHLIRRFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 M ++ F V + TP +VH ++ +++ Sbjct: 272 INDKNTMGQDLLNLFFTTFNKYVGKSDKNQAFTPDHIVHFMCKVVGVNRNSV-------- 323 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + DP CG+G FL A+ D + + +G E E + MLI Sbjct: 324 --VLDPCCGSGAFLVRALTEAMDDCNTESEREKIKSSQIYGIEYEETAFGLATTNMLIHG 381 Query: 264 LESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNGEL 321 D + NI+QG+ + + K + L NPP+ + + D + VE + + Sbjct: 382 -------DGNSNIKQGNCFLELKELSTKGINVVLMNPPYNAQRKHCDPEYVESWSEKIKE 434 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 P H K+ G A ++ + A S ++ + Sbjct: 435 D------PTKG-------FHFVYKVASYIRTGKLAVLLPMQCAI---GASSDIQTYKKKM 478 Query: 382 LENDLIEAIVALPTDLFF-RTNIATYLWILS-NRKTEERRGKVQL-INATDLWTSIRNEG 438 L+ ++A+ + P+D+F + T I K + + D + +N G Sbjct: 479 LDEHTLDAVFSFPSDIFHPGASAVTCCMIFELGTKHKNSKKDTFFGYFKDDGFEKRKNLG 538 Query: 439 K--KRRIINDDQRRQILDIYVSREN 461 + K + + LD+Y R+ Sbjct: 539 RMEKENKAWQRRESKWLDLYFKRKE 563 >gi|327404935|ref|YP_004345773.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] gi|327320443|gb|AEA44935.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] Length = 671 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 70/410 (17%), Positives = 124/410 (30%), Gaps = 106/410 (25%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-FSGIELHPDTVPD--- 152 N E + + K +F++ + + + + I Sbjct: 243 EQNTEEGRKAVAKRIKGLFDELKNDQVFSEVFDGNESIALTDKGLAFIAGELAKYSFLDA 302 Query: 153 --RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V YE ++ + + + A F TPR++V +L P + Sbjct: 303 SIDVKGMAYETIV---SNTLKQEAGQFFTPRNIVKAMVEML----------DPTETDRVL 349 Query: 211 DPTCGTGGFLTDAMNHVA-----------------------DCGSHHKIPPILVPHGQEL 247 DP CG+GGFL ++HV + + G + Sbjct: 350 DPACGSGGFLVMVLDHVRKKITEQMFPDLDGPLLAEKYNTYEVNEKVREYAENNIFGFDF 409 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------------------ 289 +P+ M++ D NI ++L+ + Sbjct: 410 DPDLKKAARMNMVMAG-------DGHANIFHVNSLAYPNWEHPAEIEKINMSINNSLRNM 462 Query: 290 -----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SML 337 +F +NPPFG K + +++ + + SD +L Sbjct: 463 KDDLSYGSDARGKFDVIFTNPPFGAKVKVEQEIASRYFLSKY-----------SDAPEVL 511 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ + L+ GG+ AIVL L N +R W+LE I A + L + Sbjct: 512 FIEACYDFLKE----GGKMAIVLPDGILGNPNTIH----VREWILEKFKILASIDLAVEA 563 Query: 398 FFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR----NEGKKRR 442 F + L L + ER ++ D + GK RR Sbjct: 564 FLPQVGVQASLLFLQKKSELERN---LALDGDDDYNVFMAIAEKLGKDRR 610 >gi|256026503|ref|ZP_05440337.1| type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) [Fusobacterium sp. D11] Length = 296 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 102/274 (37%), Gaps = 34/274 (12%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95 ++RL+ + + +EK LA NID + ++ L Sbjct: 35 LIFMKRLD---QEEQRKEKEKKLASIFGNIDEKFIFDEKHQDIRWSNLIQLGDPKQLYDK 91 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154 RN +I + D+ +++F + + I ++ +L I +P V D Sbjct: 92 IRNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++YE+L+ + + F TP+ ++++ L+ P + + DP C Sbjct: 151 KGDLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPAC 198 Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 GT GFL ++ ++ K + HG + + + +L+ ++ Sbjct: 199 GTSGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 + +++ +LS D + L+NPP Sbjct: 258 ------TPKLKRIDSLSTDYSEENDYSLVLANPP 285 >gi|291461157|ref|ZP_06027271.2| restriction enzyme BgcI subunit alpha [Fusobacterium periodonticum ATCC 33693] gi|291378622|gb|EFE86140.1| restriction enzyme BgcI subunit alpha [Fusobacterium periodonticum ATCC 33693] Length = 370 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 108/325 (33%), Gaps = 62/325 (19%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + + Y + G + + +TP+ + L LL Sbjct: 12 NNSAEDYLGRFYGEFMSYTGGD-GQNLGIVLTPKHITELFCDLL----------DLKTTD 60 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + DP CGT GFL AM+++ + K G E + + M++R Sbjct: 61 KILDPCCGTAGFLIAAMHNMIKKANDETEIKEIRKNQLFGIEEKSYMFTIATTNMILRG- 119 Query: 265 ESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 D N++ L ++ K + NPP+ + + E Sbjct: 120 ------DGKSNLENKDFLKENPAQLQLKACTVGMMNPPYSMGSKSNSSLYEINF------ 167 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 N L GR A+++ S F G+ E +I+ +L Sbjct: 168 --------------------INHLLNSIVEDGRVAVIVPQST-FTGKTKE-EQKIKEEIL 205 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ-LINATDLWTSIRNEGKKR 441 +N +E ++ L + F+R + I + + K+ IN + + K Sbjct: 206 KNHTLEGVITLNKNTFYRVGTNPCIAIF-KAHNKHPKNKICKFIN----FENDGYNISKH 260 Query: 442 RIIND-----DQRRQILDIYVSREN 461 + D D+++ +LD++ R Sbjct: 261 IGLIDDGSHRDKKQHLLDVWFERTE 285 >gi|327398989|ref|YP_004339858.1| N-6 DNA methylase [Hippea maritima DSM 10411] gi|327181618|gb|AEA33799.1| N-6 DNA methylase [Hippea maritima DSM 10411] Length = 714 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 70/465 (15%), Positives = 152/465 (32%), Gaps = 82/465 (17%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAK 112 + + LA + FY T++ +NL I F + Sbjct: 270 ELLIQILALKIFDEKRNEKNNREKLKFYITNK--------EANYSNLNDEKIEPFLKRMQ 321 Query: 113 AIFEDFD------FSSTIARLEKA---GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 +FED L +L + K F ++Y+ + Sbjct: 322 KLFEDAQSTYYTILKEQKINLRNNAHVKILVETVKQFQDFSFVKSHKT-----DLYQLIF 376 Query: 164 RRFGSE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 RF S E F+TP ++ ++ +P T+ DPT G FL+ Sbjct: 377 YRFASAFSKEQKGQFITPLPLIDFLVEIV----------NPRNGETVIDPTAGVADFLSV 426 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGS 280 + + + +G + + + + ML+ + + I Sbjct: 427 SY------VNSNSKLDDNNIYGVDNDEQMVMLAQLNMLLNGDGNAKLYYIPDKGSITHKI 480 Query: 281 TL-------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 ++ +D +F L+NPPFG+ + + E++ Sbjct: 481 SIKNEPVELIPDLHSKGNWDNWRDDTKLLKFDVVLTNPPFGEDRKWEPKTTEEKKLAELY 540 Query: 322 GRFGPGLPKISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + + + + ++FL + L+ GR IVLS+S + + R Sbjct: 541 ELWH--IARAGNWIDLGLVFLENAYRILKE----NGRLGIVLSNSI----ASIDRWEKAR 590 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG------KVQLINATDLWT 432 +WL++ I A+ LP ++F T + T L + +E + +V + + + Sbjct: 591 KWLIDKMRIVALFDLPANVFADTGVNTTLIVAYKPNPKELKRLKEQNYEVFVKDIQKVGY 650 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 ++ + + + + + + + ++ + +LD + Sbjct: 651 EVKTKKRVKYFEPIYKIDK--ETFEVVQDEEGRPVLDEEFTQTIK 693 >gi|300790744|ref|YP_003771035.1| type I restriction system adenine methylase [Amycolatopsis mediterranei U32] gi|299800258|gb|ADJ50633.1| putative type I restriction system adenine methylase [Amycolatopsis mediterranei U32] Length = 564 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 90/273 (32%), Gaps = 59/273 (21%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E + RR+ S TP + L L G + T+ DP CG G Sbjct: 129 AFELVCRRYFEAHSRRLSA--TPEPIAELMARLA------------GPVSTILDPACGFG 174 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 + GQ+ +P T ++ + +R LE + Sbjct: 175 ALALASG--------------AKTVLGQDSDPMTASIAALRLRLRGLEVEVHAV------ 214 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 L +D F G+ L +PPF ++ + V R+ GLP + + Sbjct: 215 --DALREDAFAGRTAEAVLCDPPFNERAWGHDELVG-------DARWEYGLPPRGEPELA 265 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H +E GG I++ + SG IR LL + A+V L Sbjct: 266 WVQHCLAHVEP----GGTVVILMPGAA---AGRRSG-KRIRGNLLRAGAVRAVVTL---- 313 Query: 398 FFRTNIATYLWILSNRKT-EERRGKVQLINATD 429 T LW+L E V L A D Sbjct: 314 ---TPTGPDLWLLRRPAPGERAPSTVLLGEAGD 343 >gi|110004972|emb|CAK99303.1| hypothetical n-6 adenine-specific dna methyltransferase protein [Spiroplasma citri] Length = 415 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 79/399 (19%), Positives = 131/399 (32%), Gaps = 73/399 (18%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIAS 106 L TR V + + F K+ F S L + N + + + Sbjct: 29 LGATRDEVLAQ-------QLINVIFCKIYDERFTKPESIIELRAGINENENDVKKRILNI 81 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 F + E+ D S I+ L+ ++Y + + ++++ +E I Sbjct: 82 FEKVKRKYKENIDSSDNIS-LDAKSMVYIVGEL---QNWCLIEAERDIIADAFEIFIGH- 136 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + G F TPR+VV + +L D+ L DP+CG+ GFL +++ + Sbjct: 137 --ALKGGQGQFFTPRNVVKMMVEILDPNDEDLI----------IDPSCGSDGFLIESLRY 184 Query: 227 VADCGSHHKIPPILV---------------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271 + + + + V A M I D Sbjct: 185 IWNKLDIEGKRLDWNAENLKEEKMEVALNKIREIDKDYFLTRVAKAYMAILG-------D 237 Query: 272 LSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWE-------KDKDAVEKE 315 I TL +F L+NPPFG K K + K Sbjct: 238 GKSGIFCEDTLENINTWDYKTRIKIDKGKFSILLTNPPFGSKIPVRGEEKLKQYELAYKW 297 Query: 316 HKNGELGRFGPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 K+ + G + G L + +LF+ L+ GG AIVL +F Sbjct: 298 KKDKKSGIWSKGKLNEKEAPQVLFIERNIQLLKE----GGNMAIVLPDG-IFGNDT---F 349 Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412 + IR W+ I I+ LP + F T+ T + I Sbjct: 350 AFIRNWIKNQGRILGIIDLPIETFQPNTSTKTSVLIFQK 388 >gi|282933444|ref|ZP_06338821.1| putatIve type i restriction enzyme hindviip m protein [Lactobacillus jensenii 208-1] gi|281302427|gb|EFA94652.1| putatIve type i restriction enzyme hindviip m protein [Lactobacillus jensenii 208-1] Length = 173 Score = 98.1 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 16/172 (9%) Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + ++ H+ +KL G+A VL++ L E IR+ LLE D I+AIVALP Sbjct: 1 NYAWIEHIISKLNPD----GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALP 54 Query: 395 TDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 +F+ T I LW + K +RRG+ I+A +L + R +++ + Sbjct: 55 DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMVDRT---HREFSNEDIK 111 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD 501 +I D Y + + D G+ +I K+ + ++L L Sbjct: 112 KIADTYHAYRGTNKQKYEDVA--GFCKIAKLDEIAKNDYVLTPGRYVGLAEQ 161 >gi|307273977|ref|ZP_07555187.1| hypothetical protein HMPREF9514_02719 [Enterococcus faecalis TX0855] gi|306509285|gb|EFM78345.1| hypothetical protein HMPREF9514_02719 [Enterococcus faecalis TX0855] Length = 199 Score = 97.7 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 29/197 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110 + + Y + L + + + L +F Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122 Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 A +F+D D S ++ + ++ K + +E+ V+ + YE Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180 Query: 162 LIRRFGSEVSEGAEDFM 178 LI +F SE + A +F Sbjct: 181 LISQFASEAGKKAGEFY 197 >gi|166366727|ref|YP_001659000.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa NIES-843] gi|166089100|dbj|BAG03808.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa NIES-843] Length = 588 Score = 97.7 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 110/336 (32%), Gaps = 72/336 (21%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ ++YE + + ++TPR +V + + + D Sbjct: 287 DVVGSVYEAFL---TGTLRGDLGQYLTPRQLVEFMVEIADI----------KIGEKVLDL 333 Query: 213 TCGTGGFLTDA----MNHVADCGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLI 261 +CG+GGFL A + S G E+ P +C M++ Sbjct: 334 SCGSGGFLIRAFINVRKKIRFLDSSQDEKDHLVSNLVTNNLWGIEINPRLATLCRINMIL 393 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG----------------KRFHYCLSNPPFGKKW 305 D ++I G ++ +D+F F L NPPF + Sbjct: 394 HG-------DGYEHIYTGDSIREDVFENTDGRRTDFLNIEQNNAAMFDVILINPPFNIPY 446 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 E R+ G K + G L L L+ GR ++L Sbjct: 447 EDSATL----------NRYYLGRGKAAQGSDYLVLERAIRLLKPET---GRLLVILPHGV 493 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEERRGK 421 +G E+E+R ++ I ++LP F +N T + L +KT K Sbjct: 494 ----ASGVSETEVRNFVKSRTHIHGCISLPVGSFKPFGGSNARTCVLYL--KKTTGDNKK 547 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 L A + I ++ + +ND I + Y Sbjct: 548 RFLAQAEHVGYDITSKYYRETDLND--LPVIAEAYH 581 >gi|237755533|ref|ZP_04584152.1| putative type I restriction-modification system, M subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237692296|gb|EEP61285.1| putative type I restriction-modification system, M subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 707 Score = 97.7 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 145/423 (34%), Gaps = 64/423 (15%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + + LA + K FY + + + + + I + + AK Sbjct: 264 EILIQMLALKIFDEKANKIDKNRTLKFYISQDERNYSSLADPSIQQFIRRIENLYNEAKG 323 Query: 114 IFEDFDFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + S I + + + + I +NF + ++IY+ + RF +E + Sbjct: 324 SYRTILGQSIINFKDSSHISAIVSIVENFQDYSFV-----NSYKTDIYQLVFYRFANEFA 378 Query: 172 EG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F+TP ++ ++ +P T+ DP G FL+ + Sbjct: 379 KERKGQFITPIWLIDFLVKIV----------NPRGNETVIDPCVGIADFLSLSF------ 422 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--------LESDPRRDLSKNI------ 276 + + +G + + + + ML+ + D +I Sbjct: 423 VNSNPKLKDDNLYGIDNDRQMIMLAQLNMLLNGDGNAKLYYIPDKGSIDHKIDIDGKVVK 482 Query: 277 ------QQGS-TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 + G+ D K+F L+NPPFG+ E + + L Sbjct: 483 LNPNYHKNGNWDNWPDTTELKKFDVVLTNPPFGEDRAYKAFTTEDKEIAECYELWH--LN 540 Query: 330 KISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 K + ++FL + L+ GR I+LS+S + + RRW +EN Sbjct: 541 KQGNWIDLGLIFLENAVRLLKE----NGRMGIILSNSI----ASIDRWKKARRWFIENMR 592 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRG------KVQLINATDLWTSIRNEGKK 440 I A+ LP ++F T + T + + K EE +V + + + +R + Sbjct: 593 IVALFDLPPNIFADTGVNTTIIVAYKPKKEELEKLKNQNYEVFIKDIKRVGYEVRTSKRV 652 Query: 441 RRI 443 + Sbjct: 653 KYY 655 >gi|1209820|gb|AAC44403.1| XmnI methyltransferase [Xanthomonas axonopodis pv. manihotis] Length = 620 Score = 97.7 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 101/292 (34%), Gaps = 48/292 (16%) Query: 163 IRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 +R F EV +G F+TP +VV + + P DP CG+G FL Sbjct: 108 LREFLTPEVRKGLGIFLTPDEVVREVVSFV----------DPPSSAKCLDPACGSGTFLI 157 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + + + G + P +LI L L+ N + Sbjct: 158 EVIKKWRKENA-----QKISVWGADKNPRM-------LLIGELNLGHFPGLTFNRALMDS 205 Query: 282 LSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKIS- 332 L + + F + L+NPPFG E A G F G P+ Sbjct: 206 LVEPGKRHSKPWCRYGYFDFILTNPPFGVTVEASGAAYS-----GYDIAFTANGEPRARQ 260 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ L+ GG A+VL S L N + R L + ++A++ Sbjct: 261 SSEWLFVEQSLRWLKP----GGTLAVVLPRSVLTNPSSAYE----RSLLAKLGYLKAVIQ 312 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRG---KVQLINATDLWTSIRNEGKKR 441 LP + F T T + K + KV ++ AT + G+ R Sbjct: 313 LPPETFLVTGAQTNTVVAFIEKYASDKDREKKVGVVQATLSNVGYDSTGRPR 364 >gi|257458623|ref|ZP_05623758.1| type I restriction-modification system, M subunit [Treponema vincentii ATCC 35580] gi|257444057|gb|EEV19165.1| type I restriction-modification system, M subunit [Treponema vincentii ATCC 35580] Length = 202 Score = 97.7 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 16/180 (8%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 IW A LWG ++ KVI+ LR + A E + + G + + Sbjct: 12 EKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISSAFEKRYAELVS-----DGEGFEDDR 66 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTI 124 F+ + + + + + I + + K + S + Sbjct: 67 DAYTEKNIFFVPEKARWAVIAAAAHTPEIGIVIDTAMREIETQNKRLKNVLPQNYASPDL 126 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 + +L + F+ +++ ++ YE+ I +F + + +F TP +V Sbjct: 127 DK----RVLGDVVDLFTNMDMDGTEHNKDLLGRTYEYCIAQFAAYEGKKGGEFYTPASIV 182 >gi|331669722|ref|ZP_08370568.1| type I restriction-modification system, M subunit [Escherichia coli TA271] gi|331063390|gb|EGI35303.1| type I restriction-modification system, M subunit [Escherichia coli TA271] Length = 342 Score = 97.7 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 95/299 (31%), Gaps = 62/299 (20%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106 T+ EK G + + + F + S + + + + Sbjct: 42 DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 + + +F + + + K LL K + + L ++YE+L+ + Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR ++ ++ + +P T+ DP CGTGGFL + + Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205 Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256 + + S + HG + + + Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDK 309 +++ +E + +I T+S+ + F+ L+NPPF +++ Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSKNFPQASKNAFNLILANPPFTGSLDEED 317 >gi|256027310|ref|ZP_05441144.1| type I restriction-modification system, M subunit [Fusobacterium sp. D11] Length = 834 Score = 97.7 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 149/431 (34%), Gaps = 61/431 (14%) Query: 38 FTLLRRLECALEPTRSAVRE-KYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGS 93 F L+ +E ++ + E ++ + S L+ K+ G + + + + Sbjct: 227 FIGLKM---VMEKSKKELNEKEWDSIKDSKDILDILEKIIGDTADKKIKKKYQDIFKIVD 283 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + Y A+ E+ + + + L KI K I D Sbjct: 284 KDDKVKFDFYKQLKDIRARENTENNESIKEEIDKNSNKKKNESTLMKIHKAIEEINSTND 343 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 +P + +YE L + + +F T R ++ + D + Sbjct: 344 -LPIDLFGEVYECLASK---KTKSMLGEFFTRRHIIKAIVRMFFSSKDIKDIIK--YKKI 397 Query: 209 LYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGML 260 + DP CGTGGFLT++ ++ + + G ++ + M+ Sbjct: 398 IVDPACGTGGFLTESFKYIKNYCEKEKKLSKKEISELANKIIVGYDINANSIGRTRINMI 457 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFT-------GKRFHYCLSNPPFGKKWEKDKDAVE 313 + D +I + +TL + + K Y L+N P+G+ + Sbjct: 458 LTG-------DGFSDIDRYNTLQANWYNQKENSGIKKDVDYVLTNVPYGQGDYAVSNKES 510 Query: 314 KEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 E KN + R + F++ + L+ GGRA+I+L L Sbjct: 511 DEFIKNNKNKRL----------ELNFVLKIIEMLKE----GGRASIILPEGLL----EAP 552 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR-KTEERRGKVQLINATDL 430 S R +LL IE I++LP F T TY+ L R K E KV N Sbjct: 553 TLSNFRDYLLRQCKIETIISLPKFAFAPYTKWKTYVIFLEKREKILETIEKVINKNEKIW 612 Query: 431 WTSIRNEGKKR 441 + N+G Sbjct: 613 CYIVDNDGYAN 623 >gi|237750950|ref|ZP_04581430.1| N-6 DNA methylase [Helicobacter bilis ATCC 43879] gi|229373395|gb|EEO23786.1| N-6 DNA methylase [Helicobacter bilis ATCC 43879] Length = 584 Score = 97.7 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 68/362 (18%), Positives = 115/362 (31%), Gaps = 66/362 (18%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 Y Y + + LE I + K + F + + + A + + +N Sbjct: 222 YKIEYYEFQKNRDED-KFALEKRIKGLYEKYKKEDSNV-FDNAL--ILDADEIKFLVENL 277 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 GI + + I+++ ++ F A F TP +VV + L Sbjct: 278 EGI--GLSKIELDIKGEIFQNFLKDF---FKGKAGQFFTPFNVVRFVIGCFDITQNDL-- 330 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQE 246 + DP+CG+GGFL + ++ + +H +G E Sbjct: 331 --------VLDPSCGSGGFLLRTLLYMREKCENHYKDKNDEVQKFLCWHSFAEKNLYGIE 382 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--------SKDLFTGKRFHYCLSN 298 + M+I D N+ L + F F++ +N Sbjct: 383 INGGISQAAKMQMIIH-------DDGHTNVITADGLDSFENFIRKNNKFQKNTFNFIFTN 435 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSM-------LFLMHLANKLELPP 350 PPFG K E F + K S + LFL L+ Sbjct: 436 PPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSGQKSEILFLERYFEFLKE-- 493 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408 GG A VL L N +R +LLE + A +LP F + + + + Sbjct: 494 --GGIVACVLPDGILTNSSLQ----NVRDYLLERFYLLASFSLPQHTFSNYGAGVKSSIL 547 Query: 409 IL 410 +L Sbjct: 548 VL 549 >gi|308185241|ref|YP_003929374.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori SJM180] gi|308061161|gb|ADO03057.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori SJM180] Length = 679 Score = 97.4 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 71/405 (17%), Positives = 128/405 (31%), Gaps = 88/405 (21%) Query: 79 SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 SF S+ T+ + + S K IF LY+ Sbjct: 283 SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQIF---------------TFLYEFVH 326 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 I +T +M +Y + ++ + +TP V + + LL + Sbjct: 327 K--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLGVNAKSF 383 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQE 246 + D G+ GFL +M + + K G E Sbjct: 384 ----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTIANEKIKNMKTTQLLGVE 433 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKK 304 L E ++ M++R D S I +G+T + + + + L NPPF + Sbjct: 434 LNAEMFSLATTNMILRG-------DGSSLIIKGNTFETNKKIYEDFKPNILLLNPPFSHE 486 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 M F+ ++ GG AI++ S Sbjct: 487 ENG----------------------------MPFIKFGLEHMQK----GGLGAIIIQDSA 514 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423 G + +S + +L+ + A V +PTDLF + T ++I + + V+ Sbjct: 515 ---GSGQALKSNV--EILKKHSLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVK 569 Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 I+ + G + +I+ IY + N K S+ L Sbjct: 570 FIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSKEL 614 >gi|282909128|ref|ZP_06316946.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327392|gb|EFB57687.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus WW2703/97] Length = 200 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60 A L +W A DL G+ ++F IL L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 68 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105 A+ + V++ Y + + L +T R S + Sbjct: 69 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 127 Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S+N +F D D SST E+ L+ K+ N + + ++ + YE Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187 Query: 162 LIRRFGSEVSEG 173 LI RF + + Sbjct: 188 LIGRFAATAGKK 199 >gi|159027726|emb|CAO89595.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 1193 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 101/317 (31%), Gaps = 62/317 (19%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L + I L +E + F + TPR +V + Sbjct: 286 EKLRTVVGYLESINLG--ETDLDSKGRAFETFMGSF---FRGDFGQYFTPRQIVKFIVDV 340 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------------------DCGS 232 L ++L + D +CG+GGFL A+ V Sbjct: 341 LPIQHNSL----------VLDTSCGSGGFLLHALEKVRTEADEYYPNYQTNPKEYNQHYQ 390 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGSTLSKDL 286 H G E+ + V M+I + +D RD I++ Sbjct: 391 HWHNFAQSNLFGIEINEQIARVAKMNMIIHDDGHTNVIAADGLRDSEDLIKRT---ENKG 447 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD--------GSMLF 338 FT RF + ++NPPFG ++ + A ++ + L S +LF Sbjct: 448 FTYNRFDFIITNPPFGSVIKQTEQAYISQYS--FAMKAVDWLNPKSRTTERDSQSTEVLF 505 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 L L+ GG A+V+ L N +R + E I A+V++P F Sbjct: 506 LEQCHRFLKE----GGYLAMVVPDGILTNSSLQY----VREGIEEKYRIVAVVSMPQTAF 557 Query: 399 FRT--NIATYLWILSNR 413 T + + + L Sbjct: 558 SATGAGVKSSVLFLKKH 574 >gi|256962630|ref|ZP_05566801.1| RM-CspCI [Enterococcus faecalis HIP11704] gi|256953126|gb|EEU69758.1| RM-CspCI [Enterococcus faecalis HIP11704] Length = 608 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 66/367 (17%), Positives = 126/367 (34%), Gaps = 62/367 (16%) Query: 108 SDNAKAI-FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS-NIYEHLIRR 165 S + + + E+F +LY+I P M ++ Sbjct: 235 SQDVRDLKIEEFQ-----------KILYEIKDKI-----IPYINDKSTMGQDLLNLFFTT 278 Query: 166 FGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F V + TP +VH ++ +++ + DPTCG+G FL AM Sbjct: 279 FNKYVGKADKNQAFTPDHIVHFMCKVVGINRNSV----------VLDPTCGSGAFLVRAM 328 Query: 225 NHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 D + G E E + + + MLI D + NI +GS Sbjct: 329 TEAMADCDTDEERERIKKEKIFGIEFEEKAYGLATTNMLIHG-------DGNSNILKGSC 381 Query: 282 --LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L D+ + + L NPP+ + + K K+ P F+ Sbjct: 382 FDLLDDITDNNKINRILMNPPYNAQRKHCNPEYVKTWKSNTKQ-----DPSKG---FHFV 433 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 K++ G+ A++L S ++ +LE ++A+ +LP D+F Sbjct: 434 YETVKKVKE-----GKLAVLLPMQCAI--GNSSEVKYFKKKMLEEHSLDAVFSLPIDMFH 486 Query: 400 -RTNIATYLWILS---NRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQIL 453 + + + + + + D + +N G+ ++ + + Q L Sbjct: 487 PGASASACCMVFNLGIRHGSAPLKETFFGYFKDDGFEKRKNIGRMERKNGLWQNIEEQWL 546 Query: 454 DIYVSRE 460 ++Y +RE Sbjct: 547 NLYFNRE 553 >gi|289771161|ref|ZP_06530539.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces lividans TK24] gi|289701360|gb|EFD68789.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces lividans TK24] Length = 735 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 103/303 (33%), Gaps = 50/303 (16%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE L+ R +TP + L L G RT+ DP CGTG Sbjct: 224 AYEFLLGRHLDANPRQYT--LTPDPLADLMAELA------------GPARTVLDPACGTG 269 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A P GQE +P A + L D + I Sbjct: 270 SLLRAAA---------ATTRPGQELCGQESDPALAA-------LTALRLALSTDATVRIA 313 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L D TG R L +PPF ++ + R+ G P ++ + Sbjct: 314 AGDSLRADARTGLRADAALCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELA 366 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H ++ GG +++ + SG +R LL + A++ALP Sbjct: 367 WVQHALARVRD----GGTVVVLMPPAAASR---RSG-RRVRADLLRRGALHAVIALPVGA 418 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 N+ +LW+L + + V L + R R + R +LD + Sbjct: 419 APPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDAWT 473 Query: 458 SRE 460 + + Sbjct: 474 AFD 476 >gi|256787267|ref|ZP_05525698.1| hypothetical protein SlivT_22487 [Streptomyces lividans TK24] Length = 672 Score = 97.4 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 103/303 (33%), Gaps = 50/303 (16%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE L+ R +TP + L L G RT+ DP CGTG Sbjct: 161 AYEFLLGRHLDANPRQYT--LTPDPLADLMAELA------------GPARTVLDPACGTG 206 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A P GQE +P A + L D + I Sbjct: 207 SLLRAAA---------ATTRPGQELCGQESDPALAA-------LTALRLALSTDATVRIA 250 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G +L D TG R L +PPF ++ + R+ G P ++ + Sbjct: 251 AGDSLRADARTGLRADAALCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELA 303 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 ++ H ++ GG +++ + SG +R LL + A++ALP Sbjct: 304 WVQHALARVRD----GGTVVVLMPPAAASR---RSG-RRVRADLLRRGALHAVIALPVGA 355 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 N+ +LW+L + + V L + R R + R +LD + Sbjct: 356 APPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDAWT 410 Query: 458 SRE 460 + + Sbjct: 411 AFD 413 >gi|72161753|ref|YP_289410.1| type I restriction system adenine methylase [Thermobifida fusca YX] gi|71915485|gb|AAZ55387.1| putative type I restriction system adenine methylase [Thermobifida fusca YX] Length = 558 Score = 97.4 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 35/223 (15%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +++DP CG G L P GQ+++P + L ++ Sbjct: 176 SVFDPACGLGSLLLAVG------------APDAQRTGQDIDPHAARLAQ-------LRAE 216 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + ++ G +L D + R + +PP +A + R+ G Sbjct: 217 LEYSTTAEVRVGDSLRADAWPDHRVELVVCDPPTS-------NADWGREELLLDTRWELG 269 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP ++ + +L H GGRA +V+S+S + IR ++ L+ Sbjct: 270 LPPRAEAELAWLQHAYAHTAP----GGRAIVVMSTSAAYRRTGR----RIRSEMVRRGLL 321 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATD 429 ++ALP L + +LW+L +E + +V++++ +D Sbjct: 322 TDVIALPAGLASAHSQPVHLWVLRRPTSESDAATEVRMVDMSD 364 >gi|126657630|ref|ZP_01728785.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110] gi|126621086|gb|EAZ91800.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110] Length = 1307 Score = 97.4 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 86/553 (15%), Positives = 174/553 (31%), Gaps = 44/553 (7%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 L+ L+ +++L + ID E+ + + TR+ ++ Y Sbjct: 308 LQDRLQKLYQEGMKRFLGEDVTYIDNEAIDQA----------FRFFKNDPDATRDTIKKY 357 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 F D + + +L K+ + I L + ++ + +++E + Sbjct: 358 FRQLKFFTNNDFAFIDVHNEKLFYQNGVVLLKLVQMLQDIRLKTEE-ENQFLGDMFEGFL 416 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F TP +V L I + D CG G FL + Sbjct: 417 DQ---GIKQSEGQFFTPIPIVKFILKSLPLEK---IFAESKEIPLVIDYACGAGHFLNEY 470 Query: 224 MNHVADCGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + +H + + + + + + + ++ + NI +L Sbjct: 471 AQEIKLIVENHSKNDLEKYYQNIVGIEKEYRLSK----VAKVSAFMYGQDEINIIYADSL 526 Query: 283 SK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG-ELGRFGPGLPKISDGSMLFLM 340 + + ++NPPF K + + K P + F+ Sbjct: 527 ATIPNIKENDYSILVANPPFSVKGFLETLEEKDRKKYQLIETIETKSYPNNNSIETFFIE 586 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES------EIRRWLLENDLIEAIVALP 394 L+ G I++ S L G+A S R+ LL+ I AI Sbjct: 587 RAKQLLKPD----GVMGIIVPSPILTKGKAKSTSKSTNIYVATRKILLKYFDIIAITEFG 642 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + F +T T L RK E +N + W + E K +I D+ + Sbjct: 643 SGTFGKTGTNTVTLFL-RRKPENPAPCDHFLNRVNTW--FKGEDNKDQIFQDEYLIKNYC 699 Query: 455 IYVSRENGKFSRMLD---YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 ++ + L F I L+ + F T + +L+ ++ LS Sbjct: 700 HHLEFNFEDYKTFLTGKINENFFNHDI--LKDYQKEF-YKWTEIKKLKKSRAFKALSKEA 756 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571 + LD Q FV S+ + + +K + + + F+ + + Sbjct: 757 KQEELDKRFMTYVQDIERDKLYYFVLASLNTQQVLIIKSPSKNTEMKEFL-GYEWSGRKG 815 Query: 572 DPVTDVNGEWIPD 584 G + D Sbjct: 816 SEGIKYLGNFKLD 828 >gi|17158081|ref|NP_478077.1| SsmT protein [Corynebacterium glutamicum] gi|17059600|emb|CAD12208.1| SsmT protein [Corynebacterium glutamicum] Length = 848 Score = 97.4 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 115/338 (34%), Gaps = 65/338 (19%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F++ ++L+ A L ++ G L I + + + + + T Sbjct: 267 FANKTSQLDDA-TLRQLVVKIQGFRLTDAKTE-----TIQQIFMSFVPAVFKKELSQYFT 320 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P ++ ++ G+ + DP GTG FL +A+ Sbjct: 321 PISLIETVVEMVDI----------GITDKVVDPAMGTGDFLVEALE-----KRRGDDDIH 365 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 G + +P + + + M++ +D + ++ + L NP Sbjct: 366 QRLFGADRDPSAYELAIVNMIL-------NKDGQTGLVLQDSIKNHTLWANEMNVALCNP 418 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--------------LFLMHLANK 345 PFG + + +V + + G S+G M LF+ Sbjct: 419 PFGSRTVERSKSVLEAYDLGYKWEED------SNGVMYKTDEVLSSQQLGILFIERCWKM 472 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNI 403 L GR I+L L +G+ +R+W++++ ++ A+V LP +F ++ Sbjct: 473 LTDQ----GRLGIILPEGYL----SGAKYKYLRQWIIDHFIVHAVVELPRRMFVKSDADL 524 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKK 440 + + IL R ++ S+ R G K Sbjct: 525 RSNILILEKSDAPSRN------AGRKIYASMVRKVGYK 556 >gi|330903552|gb|EGH34124.1| Type I restriction-modification system methylation subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 143 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%) Query: 80 FYNTSEYSLSTLGST---NTRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGL- 132 F+ S L + N N L + +N + E DF+ + + + L Sbjct: 9 FWVPSSSRFKHLLNEAHTNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQSKIPDLK 68 Query: 133 LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 L ++ +F + L + YE+LI F + +F TPR VV L LL Sbjct: 69 LRQLISHFGQVRLRNSDFEFPDLLGAAYEYLIGEFADSAGKKGGEFYTPRSVVRLMVRLL 128 Query: 192 LDPDDALFKESPGMIRTLYDPTCGT 216 P + +YDP CG+ Sbjct: 129 ----------RPELKHDIYDPCCGS 143 >gi|182438223|ref|YP_001825942.1| putative restriction-modification system adenine methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466739|dbj|BAG21259.1| putative restriction-modification system adenine methylase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 823 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 85/269 (31%), Gaps = 39/269 (14%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +E L+ R +TP + L L P D S +R++ DP G Sbjct: 284 GQAFEFLLGRHLDANPRQYT--LTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAG 341 Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 TG L A + + + L ++ Sbjct: 342 TGSLLRAVTGPAALYAQEADAGLAALTALRLALCA------------------DATRDAP 383 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 S ++ G TL D F L +PPF + + R+ G P Sbjct: 384 ASPAVRTGDTLRADAFPRLATDTVLCHPPFNDRNWGHD-------ELAYDPRWEYGFPAR 436 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + ++ H +L GG A +++ + SG IR LL + A++ Sbjct: 437 VESELAWVQHALARLRD----GGTAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVI 488 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRG 420 ALP I +LW+L R G Sbjct: 489 ALPAGAAPPYGIPLHLWVLRRPTPGVRPG 517 >gi|218691195|ref|YP_002399407.1| putative Restriction enzyme subunit alpha [Escherichia coli ED1a] gi|218428759|emb|CAR09699.2| putative Restriction enzyme alpha subunit [Escherichia coli ED1a] Length = 629 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 71/452 (15%), Positives = 142/452 (31%), Gaps = 88/452 (19%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNL 100 +R L+ +R + S D V + NT+ + + L + ++ Sbjct: 171 KRHNDLLDFSRELHELIWAKAKISEEDKPLLVSGTLIALMNTTFMKTFNALPANELQDAW 230 Query: 101 ESYIASFSDNA------KA--------IFEDFDFSSTIARLEK---AGLLYKICKNFSGI 143 I + A K I + A++ + G+ KI + Sbjct: 231 LDAIRKELNKADIPQAKKDTMLQPYTYIAVHPNLGKPDAKIAREYPDGVFKKIITDIFEK 290 Query: 144 ELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 V+ Y + ++ + + +TPR + L Sbjct: 291 VWPYINIYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHIAELF----------SLLA 339 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---ILVPHGQELEPETHAVCVAG 258 + + D GTGGFL AM + + G E P+ A+ + Sbjct: 340 NVTPESRVLDICAGTGGFLISAMQQMLKKAVTEEQRQDIRKNRLIGIENSPKMFALAASN 399 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++R D N+ Q S + + + + + NPP+ + Sbjct: 400 MILRG-------DGKANLHQASCFDEVINCAVKKMKPNVGMLNPPYAQA----------- 441 Query: 316 HKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 SD + F+ + N LE G AIV S + Sbjct: 442 ---------------KSDAELHELYFVKQMLNCLEPGSYG---IAIVPMSCAISPN---- 479 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDL 430 +R LL + ++A++++P +LF+ + T + + + K D Sbjct: 480 ---PVREELLRHHTLDAVMSMPAELFYPVGVVTCIMVWIAGIPHDVSDRKTWFGYWRDDG 536 Query: 431 WTSIRNEGKK--RRIINDDQRRQILDIYVSRE 460 + +++G+ R + +++Y +RE Sbjct: 537 FVKTKHKGRTDLYNRW-PSIRDRWVEMYRNRE 567 >gi|86151110|ref|ZP_01069326.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni 260.94] gi|85842280|gb|EAQ59526.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni 260.94] Length = 1279 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 149/468 (31%), Gaps = 27/468 (5%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + +S + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L S L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPGSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIETE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ ++ + R +F Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKK 734 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L + + L +L + + + Y + I Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782 >gi|237751391|ref|ZP_04581871.1| site-specific DNA-methyltransferase [Helicobacter bilis ATCC 43879] gi|229372757|gb|EEO23148.1| site-specific DNA-methyltransferase [Helicobacter bilis ATCC 43879] Length = 641 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 54/407 (13%), Positives = 132/407 (32%), Gaps = 75/407 (18%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAK-----------AIFEDFDFSSTIARLEKAG-L 132 + L L + +++ + +DN K + F ++ + Sbjct: 219 NFDLERLNTDKQKSDGIKIYEAIADNLKRANVRPEVKKDKLLSQFSIIKDTPKINETNST 278 Query: 133 LYKI-CKNFSGI-------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 L K K+++ + + ++ Y + ++G + +TP+ + Sbjct: 279 LGKTPLKHYTEFLYKRIYQNIKYTQTSEDILGLFYSEFM-KYGGGDGQTLGIILTPKHIC 337 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LV 241 L L+ ++DP CGT GFL AM+++ + Sbjct: 338 ELFCDLV----------ELKPNDVVFDPCCGTAGFLIAAMHNMLSQVTDETQRQHIKENQ 387 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---FHYCLSN 298 G E +P+ + M++R D N++ L ++ F ++ + N Sbjct: 388 LFGIEEKPDMFCIATTNMIVRG-------DGKSNLENKDFLKQNPFELQKDIAASIGMMN 440 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PP+ + + + + E +L G +A + Sbjct: 441 PPYSQGSKANPNLYEIAFSE--------------------------QLLDSLTKGAKAIV 474 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 ++ S + E I+ +L+ +E ++ + F+ + I + Sbjct: 475 IIPQSAV--TGKSKEEKAIKANILKKHTLEGVITCNKNTFYGVGTNPCIAIFTAWIP-HH 531 Query: 419 RGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + K+ + D + +++G I D++ +L ++ + Sbjct: 532 KDKICKFIHYEDDGFEVQKHKGLVETIHAKDKKAHLLKVWRDEMEAE 578 >gi|284926281|gb|ADC28633.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni IA3902] Length = 1364 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 76/487 (15%), Positives = 155/487 (31%), Gaps = 34/487 (6%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + +S + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINMETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ ++ + R +F Sbjct: 675 NLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKR 734 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 L + + L +L + + + Y + E +K + Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLY-------FSLSLNQEVLIIKSPSDI 787 Query: 555 SFIVAFI 561 F+ Sbjct: 788 KEQKKFL 794 >gi|162456792|ref|YP_001619159.1| type I restriction-modification system M subunit [Sorangium cellulosum 'So ce 56'] gi|161167374|emb|CAN98679.1| probable type I restriction-modification system,M subunit [Sorangium cellulosum 'So ce 56'] Length = 360 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 17/163 (10%) Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE----KDKDAVEKEHK 317 + + I+ +L+ D G R+ L+NPPFGKK + +E Sbjct: 25 HGIGPSA-DEGQPPIETRDSLAAD--PGARYSMVLTNPPFGKKSSVMVLTQEGDESREAL 81 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 F S+ + F+ H+ L + GRAA+V+ + LF G A GE+ I Sbjct: 82 TVMREDFWATT---SNKQLNFVQHVKTILAIH----GRAAVVVPDNVLFEGGA--GET-I 131 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 RR LL + + ++ LPT +F+ + + + E+ Sbjct: 132 RRKLLHDCDVHTLLRLPTGIFYAQGVKANVLFFDKKPASEKPW 174 >gi|88596084|ref|ZP_01099321.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni 84-25] gi|88190925|gb|EAQ94897.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni 84-25] Length = 1365 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 75/487 (15%), Positives = 155/487 (31%), Gaps = 34/487 (6%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + ++ + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ ++ + R +F Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNLAELEAFKDYRNAFRQTSDYKK 734 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 L + + L +L + + + Y + E +K + Sbjct: 735 LKESKFYKESKDKQDLEDKAFLAYAQAIEKDKLLY-------FSLSLNQEVLIIKSPSDI 787 Query: 555 SFIVAFI 561 F+ Sbjct: 788 KEQKKFL 794 >gi|84387340|ref|ZP_00990360.1| putative restriction-modification system methyltransferase [Vibrio splendidus 12B01] gi|84377789|gb|EAP94652.1| putative restriction-modification system methyltransferase [Vibrio splendidus 12B01] Length = 1303 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 132/375 (35%), Gaps = 47/375 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 +S ++E +++ + F + + + L A+ +P T+ DP Sbjct: 134 DISQLFEVILQ---ETRTPQTTQFSSSKFLSQLIVAI----------AAPKSGDTILDPC 180 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL A N + + G +L + + + + + Sbjct: 181 AGEGSFLIAAHNAIEAAHTD--FLSQTSFTGYDLSEDAILIAMVRFFLSGA-FNFHLSRR 237 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + + + +D ++ L+ PP G K ++++ + P + +D Sbjct: 238 SGLYE--SYGRDQHP--KYDVVLAQPPVGIK--------RDDYRHLSYEKQFPVI--TND 283 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 ++F+ L+ GGRA I + LF + E+RR+L+E+ IEA+V + Sbjct: 284 IVVMFIQQALFSLK----LGGRAIIAIPEGLLF--GKNGSQIELRRYLVEHGYIEAVVRI 337 Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 P + + I L +LSN K R KV+ + + R+ K + + QI Sbjct: 338 PPKMLIEDSGIRGALLLLSNSKKRNR--KVRFADLATYFH--RDINKSTQALPKALVEQI 393 Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPL 510 L+ E + L G + V R + + D+ + Sbjct: 394 LEGLF-CEELPEAIPLPP---GVKEGTVGTGVSTRAFWDTSVEEIEGNNWDLNPVRNKDD 449 Query: 511 HQSFWLDILKPMMQQ 525 + L + +M Sbjct: 450 ALTLLLTDFRKLMGD 464 >gi|326778874|ref|ZP_08238139.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] gi|326659207|gb|EGE44053.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] Length = 784 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 85/269 (31%), Gaps = 39/269 (14%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 +E L+ R +TP + L L P D S +R++ DP G Sbjct: 245 GQAFEFLLGRHLDANPRQYT--LTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAG 302 Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 TG L A + + + L ++ Sbjct: 303 TGTLLRAVTGPAALYAQEADAGLAALTALRLALCA------------------DATRDAP 344 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 S ++ G TL D F L +PPF + + R+ G P Sbjct: 345 ASPAVRTGDTLRADAFPRLATDTVLCHPPFNDRNWGHD-------ELAYDPRWEYGFPAR 397 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + ++ H +L GG A +++ + SG IR LL + A++ Sbjct: 398 VESELAWVQHALARLRD----GGTAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVI 449 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRG 420 ALP I +LW+L R G Sbjct: 450 ALPAGAAPPYGIPLHLWVLRRPTPGVRPG 478 >gi|317011606|gb|ADU85353.1| type II restriction modification enzyme methyltransferase [Helicobacter pylori SouthAfrica7] Length = 679 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 117/351 (33%), Gaps = 72/351 (20%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 LY++ I +T +M +Y + ++ + +TP V + + LL Sbjct: 321 LYELVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240 + + D G+ GFL +M + + K Sbjct: 378 VNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKAMKTT 427 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSN 298 G EL E ++ M++R D S I +G+T + + + + L N Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETNKKTYEDFKPNILLLN 480 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + M F+ ++ GG AI Sbjct: 481 PPFSHEENG----------------------------MPFIKFGLEHMQK----GGLGAI 508 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ S G + +S + +L+ + A V +PTDLF + T ++I + + Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHTLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHD 563 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 V+ I+ + G + +I+ IY + + K S+ L Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNETSSPTKRYEEIIKIYKAGLSAKVSKEL 614 >gi|289765284|ref|ZP_06524662.1| type I restriction-modification system [Fusobacterium sp. D11] gi|289716839|gb|EFD80851.1| type I restriction-modification system [Fusobacterium sp. D11] Length = 601 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 71/341 (20%), Positives = 119/341 (34%), Gaps = 49/341 (14%) Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + L KI K I D +P + +YE L + + +F Sbjct: 81 EIDKNSNKKKNESTLMKIHKAIEEINSTND-LPIDLFGEVYECLASK---KTKSMLGEFF 136 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231 T R ++ + D + + DP CGTGGFLT++ ++ + Sbjct: 137 TRRHIIKAIVRMFFSSKDIKDIIK--YKKIIVDPACGTGGFLTESFKYIKNYCEKEKKLS 194 Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288 + G ++ + M++ D +I + +TL + + Sbjct: 195 KKEISELANKIIVGYDINANSIGRTRINMILTG-------DGFSDIDRYNTLQANWYNQK 247 Query: 289 -----GKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHL 342 K Y L+N P+G+ + E KN + R + F++ + Sbjct: 248 ENSGIKKDVDYVLTNVPYGQGDYAVSNKESDEFIKNNKNKRL----------ELNFVLKI 297 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401 L+ GGRA+I+L L S R +LL IE I++LP F T Sbjct: 298 IEMLKE----GGRASIILPEGLL----EAPTLSNFRDYLLRQCKIETIISLPKFAFAPYT 349 Query: 402 NIATYLWILSNR-KTEERRGKVQLINATDLWTSIRNEGKKR 441 TY+ L R K E KV N + N+G Sbjct: 350 KWKTYVIFLEKREKILETIEKVINKNEKIWCYIVDNDGYAN 390 >gi|225568966|ref|ZP_03777991.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM 15053] gi|225162465|gb|EEG75084.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM 15053] Length = 621 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 122/377 (32%), Gaps = 51/377 (13%) Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 + + + FS+ + + I R +L + S + ++ Sbjct: 73 DFKVAVHRFSEKVDWVL--VENDEEIQR-----ILGDVENYISTYMRNDVCGKGEGITEK 125 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + L++ TP V L LL + + D CGTG Sbjct: 126 MDVLLQAVLELEGWSGTYQSTPASVQKLVAELLSGSQA----------KHMLDLCCGTGL 175 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + + ++ L G E+EP + + + +E I + Sbjct: 176 YGLTLYHKLSRENPA------LTFCGIEVEPVLCDIADINLYLHGVE-------RGRIVK 222 Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 L+ + + + P G + D ++++ + + Sbjct: 223 TDLLALPRSTVEELADLIVMDIPRGNNVAETYD--RRDYRLIHFDKQHIY------SDWI 274 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ +L + GRAA++ +S L E +R ++ +D +EA++ LP++L Sbjct: 275 FIQDALYRLNVK----GRAAVLATSGALIRLN----EKGLREQIVLSDWLEAVITLPSNL 326 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 + R I T L I + K ERR K+ I+ + + + + ++ Y Sbjct: 327 YPRMGIGTELLIFNKNKRPERREKILFIDISSYYKIEKR---NMCAVTEEGIYIAGKCYR 383 Query: 458 SREN-GKFSRMLDYRTF 473 S ML Sbjct: 384 HGTELSGISVMLKSTDL 400 >gi|296875872|ref|ZP_06899933.1| type II DNA modification protein [Streptococcus parasanguinis ATCC 15912] gi|296433113|gb|EFH18899.1| type II DNA modification protein [Streptococcus parasanguinis ATCC 15912] Length = 811 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 62/392 (15%), Positives = 115/392 (29%), Gaps = 87/392 (22%) Query: 76 AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF-SSTIARLE------ 128 +FYN + +NL K I E + + LE Sbjct: 203 KSENFYNNFPDLYPSYTPIQILDNLY-------PTVKGILEKEGIPENKLRALEGELGSI 255 Query: 129 -------KAGLLYKICKNFSGI-----ELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAE 175 +L +I + H T + M YE + +F + Sbjct: 256 KTDVNLQNTAILKQILDELNQKVIPLFNNHFSTNSNYDIMGKFYEEFL-KFAGVSNVKKG 314 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +TPR + L T L+ + + D CGTG FL MN + + Sbjct: 315 IVLTPRHITGLFTKLIPLKANDVI----------LDLCCGTGAFLIAGMNKLLSIQGADE 364 Query: 236 IP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290 G E+ + ++ ML R D I ++ D K Sbjct: 365 KNIKENQLLGFEINSTMYICAISNMLFRG-------DGKSRIYNLDSV-NDKEADKILKE 416 Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + NPP+ K KD ++ L+ Sbjct: 417 VKPTIGFINPPYSGKENKDDPTPKE----------------------------ITFLKKL 448 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408 + R +V++ ++ +R +L ++ ++ +P DLF + +T + Sbjct: 449 LDNCSRYGVVIAPLSMYFKD-----KSLRNKILSKHTLKYVINMPKDLFQPNASTSTAIA 503 Query: 409 ILSNRKTEERRGKVQLINA-TDLWTSIRNEGK 439 + + V + D + +N+G+ Sbjct: 504 VFETHLPHDYNNDVVFYDLKNDGFILSKNKGR 535 >gi|57168922|ref|ZP_00368052.1| type I restriction modification enzyme [Campylobacter coli RM2228] gi|57019758|gb|EAL56444.1| type I restriction modification enzyme [Campylobacter coli RM2228] Length = 1343 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 150/468 (32%), Gaps = 27/468 (5%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + ++ + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ ++ + R +F Sbjct: 675 NLKDNESFYQNYLNTYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKK 734 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L + + L +L + + + Y + I Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782 >gi|315639044|ref|ZP_07894213.1| N-6 DNA methylase superfamily protein [Campylobacter upsaliensis JV21] gi|315480872|gb|EFU71507.1| N-6 DNA methylase superfamily protein [Campylobacter upsaliensis JV21] Length = 695 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 65/358 (18%), Positives = 109/358 (30%), Gaps = 62/358 (17%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 Y Y + + LE I + K + F + + + A + + +N Sbjct: 222 YKIEFYEFQKNRDED-KFALEKRIKGLYERYKEKDSNV-FDNAL--ILDADEIKFLVENL 277 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 I + I++ F A + TP ++V D L Sbjct: 278 ESI--SLSETELDIKGKIFQKFFEDF---FKGKAGQYFTPPNIVRFVVECFDISKDDL-- 330 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILV------PHGQELEPE 250 + DP+CG+GGFL + ++ + + +G E+ Sbjct: 331 --------VLDPSCGSGGFLLRTLIYMQEESKKLDGEYNQKRFWHSFAEKNLYGIEINGG 382 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFG 302 M+I D N+ L + F F++ +NPPFG Sbjct: 383 ISQAAKMQMIIH-------DDGHTNVITADGLDSFENFIKKNNKFQKNTFNFIFTNPPFG 435 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSM-------LFLMHLANKLELPPNGGG 354 K E F + K S + LFL L+ GG Sbjct: 436 SSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSAQKSEILFLERYFEFLKE----GG 491 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWIL 410 A VL L N +R +LLE + A +LP F + + + + +L Sbjct: 492 IVACVLPDGILTNSSLQ----NVRDYLLERFYLLASFSLPQHTFSNYGAGVKSSILVL 545 >gi|296285046|ref|ZP_06863044.1| N-6 DNA methylase [Citromicrobium bathyomarinum JL354] Length = 866 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 108/321 (33%), Gaps = 66/321 (20%) Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + ++ D + +E + +G + TPR +V L Sbjct: 256 GTVADLLEKLQPFSVRSEDVDLKGRAFEEFLP--SQLRGKGLGQYFTPRPLVEFMCDLAE 313 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----------------CGSHHKI 236 TL D CG+GGFL +A + + S + Sbjct: 314 VSLSD----------TLLDFACGSGGFLINAYERMREEVELIPAGTLQRLGETRESLIED 363 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF---- 292 G + EP ML+ + + +G+ L+ TGK + Sbjct: 364 VKSKQIFGIDAEPRAARTARMNMLLWG--------DGRCVMRGNALASQDLTGKPYPISP 415 Query: 293 ----------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 L+NPPFG + ++ K + + + R K +LF+ Sbjct: 416 YKKSDNNSGCSLILANPPFGAREKEQKVLKKYIFGSKKRQR------KSQKTEVLFVERA 469 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L GR AIVL + L + S++R ++ + + A+V+LPT F ++ Sbjct: 470 MELLRPE----GRMAIVLPTGLL----SADTYSDLRGFIARHAKVNAVVSLPTHAFVQSG 521 Query: 403 IAT-YLWILSNRKTEERRGKV 422 + T IL +K E K+ Sbjct: 522 VPTVNTVILYVQKHSESSRKI 542 >gi|261838746|gb|ACX98512.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori 51] Length = 535 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 133/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 118 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 172 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 173 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 214 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 215 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 264 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 265 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 317 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 318 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 349 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AAI++ S G + +S I +L+ + A + +PTDLF Sbjct: 350 KFGLEYMQK----GALAAIIIQDS---TGSGQALKSNI--EILKKHSLLASIKMPTDLFM 400 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 401 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 460 Query: 459 RENGKFSRML 468 N K S+ L Sbjct: 461 GLNAKVSKEL 470 >gi|196233547|ref|ZP_03132389.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428] gi|196222399|gb|EDY16927.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428] Length = 363 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 105/285 (36%), Gaps = 32/285 (11%) Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 G+ L++ A L+ GRAA+V+++S A E++IRR L+E +LI ++ L Sbjct: 2 GNYLWINLFATSLKPT----GRAALVMANSA---SDARHSEADIRRKLIEENLIYGMLTL 54 Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P+++F+ + LW KT+ ++ I+A +++T I ++ + I Sbjct: 55 PSNMFYTVTLPATLWFFDRAKTD---DRILFIDARNVFTQIDRAHREFSTAQVNNLAIIS 111 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPL--RMSFILDKTGLARLEADITWRKLSPLH 511 ++ R +F ++D Y + R L R L + D +K Sbjct: 112 RLHKGRRE-EFVELVDR----YFAFGMERLLENRKRVQPVSGQLLEVLEDAAGKKAVGEL 166 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD--- 568 W + K + + Y K N+A+ +A F + D Sbjct: 167 VKQWAGLGK-LEARYDQYRKGAGDSAPIEKRNKAQHQLREAFDPFFTGLHEGLKQLDRIV 225 Query: 569 -----PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVS 608 +A+ D ++++ REV Sbjct: 226 RQHEKEQAEAAQKEGKRGSTDRQTR-----ALKTALEE-LHREVK 264 >gi|322513587|ref|ZP_08066687.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976] gi|322120658|gb|EFX92552.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976] Length = 802 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 147/482 (30%), Gaps = 63/482 (13%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSD 109 + ++E A S I + KV S+ N + L T + L + S + Sbjct: 185 HKKKIKESNRALLISGILVALQNKVFRISYKENKTPQDLITSLLNAISSELRAD-KSKNK 243 Query: 110 NAKAIFEDFDFSSTIARLEKAGL-LYKICKNFSGIELH-----PDTVPDRVMSNIYEHLI 163 NA + F+F + E L + + I+ + +S Y + Sbjct: 244 NADTVLGAFNFIRSNKTFEDDKTGLLNLLSVINSIKDNVYTFLDKYKYIDTLSQFYIEFL 303 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R + +G +TP + L + D + + D GTGGFL A Sbjct: 304 RY--ANTDKGLGIVLTPLHIAQLFAKMAGVNKDTV----------VLDNAAGTGGFLVAA 351 Query: 224 MNHVADCGSHHKIP----PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 M + + +G E E A+ V+ M+I D NI G Sbjct: 352 MGEMILDAGDDEKKILDIKKNQIYGIEYEDSILALLVSNMIIH-------SDGRSNIYWG 404 Query: 280 STLS--KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG---ELGRFGPGLPKISDG 334 ++ D + + + K ++ E+K F + Sbjct: 405 NSFDIIPDKLLKYKDYNKNKKEDEIIQSLKYENINLDENKIDVGLLNPPFKMATDDTEEF 464 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +F + L GG A++ +S + LL N +EA+V+LP Sbjct: 465 EFIF-----SNLNAIKKGGTVIALIPTSVINDTSGVNYINK---KKLLRNHTLEAVVSLP 516 Query: 395 TDLFFR--TNIATYLWILSNRKTEERRGKVQL-INATDLWTSIRNEGKK--------RRI 443 DLF T+I T +++ + + D + +N G+ Sbjct: 517 EDLFANSKTSIVTVGIVITAHIPHPKLKETWFGYWRDDKFVKTKNLGRADINQEWYGENK 576 Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRT--------FGYRRIKVLRPLRMSFILDKTGL 495 + + ++ + R+ Y + + L+ + + Sbjct: 577 LQEQWLSSFINKKEDYQFSIKRRVTADDEWLAEAYLKTNYSSLTIDTVLKPCYQYMAFRI 636 Query: 496 AR 497 Sbjct: 637 EN 638 >gi|57237937|ref|YP_179185.1| type II restriction-modification enzyme [Campylobacter jejuni RM1221] gi|57166741|gb|AAW35520.1| type II restriction-modification enzyme [Campylobacter jejuni RM1221] gi|315058494|gb|ADT72823.1| Type I restriction-modification system, DNA-methyltransferase subunit M / Type I restriction-modification system, specificity subunit S [Campylobacter jejuni subsp. jejuni S3] Length = 1343 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 150/468 (32%), Gaps = 27/468 (5%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + ++ + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494 K + + +S L+ ++ + R +F Sbjct: 675 NLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNLAELEAFKDYRNAFRQTSDYKK 734 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 L + + L +L + + + Y + I Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782 >gi|262191973|ref|ZP_06050139.1| type I restriction-modification system M subunit putative [Vibrio cholerae CT 5369-93] gi|262032148|gb|EEY50720.1| type I restriction-modification system M subunit putative [Vibrio cholerae CT 5369-93] Length = 684 Score = 95.0 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 64/393 (16%), Positives = 114/393 (29%), Gaps = 86/393 (21%) Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139 F+ + G R + IF + I ++A L + Sbjct: 240 FWASPTEQFDDEGRKKIRARINPLFEKVKKAYPEIFAG---NEEITLSDRA--LAFMVSE 294 Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + + + Y+ ++ + + TPR + L ++ Sbjct: 295 LAKYDFTRTEMD--AKGAAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMM-------- 341 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------------------GSHHKIPPI 239 +P + DP+CGTGGFL ++ + K Sbjct: 342 --APQPHEKVLDPSCGTGGFLEQTLSFINKQLREKEAISLAAETTEEFISIQQQIKEFAE 399 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------------- 286 G + +P +++ + NI ++L Sbjct: 400 NNLFGCDFDPFLCRASQMNVVM-------ASNAMANIYHMNSLEYPHGHLKGVDPAKKTI 452 Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPG----LPKISDG- 334 L+NPPFG + +++ R G + D Sbjct: 453 PVGDSSGKDGSVDVILTNPPFGSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAV 512 Query: 335 --SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 +LF+ L+ GGR IVL L G+ IR WL++ + V Sbjct: 513 SPEILFIERCVQWLKQ----GGRMGIVLPDGIL----GNPGDEYIRWWLMQECWVLGCVD 564 Query: 393 LPTDLF---FRTNIATYLWILSNRKTEERRGKV 422 LP + F NI T L L +KT+ + + Sbjct: 565 LPVESFIVEANVNILTSLLFL-KKKTDTEKDAI 596 >gi|254410126|ref|ZP_05023906.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196183162|gb|EDX78146.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 679 Score = 95.0 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 74/409 (18%), Positives = 130/409 (31%), Gaps = 46/409 (11%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 +++ P ++ ++ LI ++ F TPR +V ++ P Sbjct: 137 DINLVESPSYIIGEAFQALIG---PKLRGDKGQFFTPRSLVKTMVSI----------ADP 183 Query: 204 GMIRTLYDPTCGTGGFLTDAMNH-VADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LI 261 + DP CGTG FL+++ N+ + G G + + + + A + +I Sbjct: 184 KPYSKVVDPACGTGSFLSESYNYWIETTGETLLPDNHYSLVGLDKDKDISRLATATLEII 243 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNG 319 S +I L F+ K F L+NPPFG K ++++ +++ G Sbjct: 244 APNNYSVFTTDSLDINH---LIASGFSSKIFDADVVLTNPPFGAKIGVTRESILEQYDLG 300 Query: 320 ELGRF---------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 F + K D +LF+ L+ GG IVL N + Sbjct: 301 HHWYFSSTENSWIKSDKVRKNQDPQILFIELCVKILKP----GGVLGIVLPEGVFGNKQT 356 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG-----KVQL 424 G +L + +I A++ P F T+ T + K + KV + Sbjct: 357 GYIWD----YLHQEGIITALLDCPRTTFQPGTDTKTNVLFFQKFKDKSHNKTRYPIKVPI 412 Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484 A R G+ + I ++ S+ V R Sbjct: 413 AVALHCGHDRR--GRVTLENGQKYPDDFITIAHEFKDNNSSKYWSNCEVNNPYYWVPRFY 470 Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 S E L +S ++ I K YG Sbjct: 471 DASLSKSIQK-KAFEMHADLASFDELIKSGYIAIRKGHEVGSQAYGTGN 518 >gi|297157985|gb|ADI07697.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces bingchenggensis BCW-1] Length = 769 Score = 95.0 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 91/254 (35%), Gaps = 33/254 (12%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE LI R +TP ++ L AL D+ SP T+ DP GTGG Sbjct: 187 YEFLIGRHLDANPRQYT--VTPPELAELMAALAGLADEPTGPLSPAP--TVLDPASGTGG 242 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + + + QEL+ + A+ R + + + Sbjct: 243 LLWAVL----------RTHSVATLYAQELDRDLAALTAL----RLALTHEGQGTQVRVHG 288 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G +L D +S+PPF ++ + R+ G P ++ + + Sbjct: 289 GDSLRADALPQLAADAVVSHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELAW 341 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H L GG A +++ + SG IR LL + A+VALP Sbjct: 342 VQHALAHLRD----GGTAVLLMPPAVASR---RSG-RRIRADLLRRGALRAVVALPAGAA 393 Query: 399 FRTNIATYLWILSN 412 I +LW+L Sbjct: 394 PPYGIPLHLWVLRR 407 >gi|254391268|ref|ZP_05006473.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] gi|294816307|ref|ZP_06774950.1| Putative type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] gi|326444637|ref|ZP_08219371.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] gi|197704960|gb|EDY50772.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] gi|294328906|gb|EFG10549.1| Putative type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] Length = 666 Score = 95.0 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 101/276 (36%), Gaps = 37/276 (13%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + YE L+ R+ + + TP + L AL D RT+ DP C Sbjct: 126 VGPTYEFLLERW--LGAHVRQVTTTPGQLAELMVALAAPSGD--------RPRTVLDPAC 175 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GTGG L A +H L G ++ P + + L R + Sbjct: 176 GTGGLLLTAGHH-------WSSRRRLDLLGADISPVLTRLARGRVATAGLP----RSVRT 224 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 I+ G TL D++ +R L NPP+ + + + R+ P ++ Sbjct: 225 QIRTGDTLRSDVWPEERADVVLCNPPYNTRDWGHE-------ELATDPRWVFAHPPRTEP 277 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + ++ H ++L GG A ++L IR LL + A++ALP Sbjct: 278 ELAWVQHALSRLAD----GGTAVLLLPPGV----AKRRAGRRIRAGLLRTGALRALIALP 329 Query: 395 TDLFFRTNIATYLWILSNRKTEE-RRGKVQLINATD 429 ++ +LW+L + + L++A D Sbjct: 330 VGSAPPHSVGLHLWLLRKPAEDAPPPTTLLLVDAED 365 >gi|72536282|gb|AAZ73197.1| hypothetical protein [Escherichia coli] Length = 246 Score = 95.0 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 53/193 (27%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++YE+L+ + + F TPR ++ ++ + +P T+ DP Sbjct: 60 DTKGDLYEYLLSKLTTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDP 109 Query: 213 TCGTGGFLTDAMNHVADCGSH------------------------------HKIPPILVP 242 CGTGGFL + ++ + S + Sbjct: 110 ACGTGGFLATSYEYLLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMF 169 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCL 296 HG + + + +++ +E + +I T+S+ + F+ L Sbjct: 170 HGYDFDTTMLRIAAMNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLIL 222 Query: 297 SNPPFGKKWEKDK 309 +NPPF +++ Sbjct: 223 ANPPFTGSLDEED 235 >gi|292630956|gb|AAF77188.2|AF264911_4 restriction and modification enzyme CjeI [Campylobacter jejuni] Length = 1273 Score = 95.0 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 73/485 (15%), Positives = 153/485 (31%), Gaps = 30/485 (6%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + ++ + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L + F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGSQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLA 496 K + + +S L+ ++ + R +F Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNLAELEAFKDYRNAFRQTSD--- 731 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556 + K+ + K + + + E +K + Sbjct: 732 --YKKLKESKIYKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKE 789 Query: 557 IVAFI 561 F+ Sbjct: 790 QKKFL 794 >gi|283956931|ref|ZP_06374404.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283791657|gb|EFC30453.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 242 Score = 95.0 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 108/277 (38%), Gaps = 41/277 (14%) Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKD 310 + V M++ + S NI + +TLSK D+ +++ L NPPFG K ++ Sbjct: 1 MGVMNMILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILVNPPFGGKEKEQIQ 53 Query: 311 AVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 P S+ +LFL H+ L+ GR AI++ LF Sbjct: 54 ENF---------------PIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLFQN- 93 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428 + +++ LL++ +E +++LP+ +F + + T + S K G + Sbjct: 94 -SNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGV 147 Query: 429 DLWTSIRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 + I K + + ++ L Y R+ S ++ + R + Sbjct: 148 YYYELIPPYKLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNP 205 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + ++ L E + + + Q +L+ LK +++ Sbjct: 206 NVKEEKILKTSEEILNSLEENLKIQQEYLNELKSILK 242 >gi|209406225|ref|YP_002154434.1| type II restriction modification enzyme methyltransferase [Helicobacter pylori Shi470] gi|190195547|gb|ACE73643.1| type II restriction modification enzyme methyltransferase [Helicobacter pylori Shi470] Length = 891 Score = 95.0 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 70/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + +S + +L+ + A + +PTDLF Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N + S+ L Sbjct: 605 GLNAEVSKEL 614 >gi|24373032|ref|NP_717074.1| type I restriction-modification system, M subunit, putative [Shewanella oneidensis MR-1] gi|24347201|gb|AAN54519.1|AE015590_1 type I restriction-modification system, M subunit, putative [Shewanella oneidensis MR-1] Length = 684 Score = 95.0 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 64/395 (16%), Positives = 114/395 (28%), Gaps = 86/395 (21%) Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139 F+ + G R + IF + I ++A L + Sbjct: 240 FWASPTEQFDDEGRKKIRARINPLFEKVKKAYPEIFSG---NEEIILSDRA--LAFMVSE 294 Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + + + Y+ ++ + + TPR + L ++ Sbjct: 295 LAKYDFTRTEMD--AKGAAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMM-------- 341 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------CGSHHKIPPI 239 +P + DP+CGTGGFL ++ + K Sbjct: 342 --APQPHEKVLDPSCGTGGFLEQTLSFINRKLCEEEEVKLGAETTEEFISIQQQIKKFAE 399 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------------- 286 G + +P +++ + NI ++L Sbjct: 400 NNLFGCDFDPFLCRASQMNVVM-------ASNAMANIYHMNSLEYPHGHLKGVEPAKSKI 452 Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPG----LPKISDG- 334 L+NPPFG + +++ R G + D Sbjct: 453 PVGDSSGKDGSIDVILTNPPFGSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAV 512 Query: 335 --SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 +LF+ L+ GGR IVL L G+ IR WL++ + V Sbjct: 513 SPEILFIERCVQWLKQ----GGRMGIVLPDGIL----GNPGDEYIRWWLMQECWVLGCVD 564 Query: 393 LPTDLF---FRTNIATYLWILSNRKTEERRGKVQL 424 LP + F NI T L L +KT+ + + Sbjct: 565 LPVESFIVEANVNILTSLLFL-KKKTDTEKDAIAF 598 >gi|218562667|ref|YP_002344446.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360373|emb|CAL35169.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927941|gb|EFV07263.1| type I restriction modification DNA specificity domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 1339 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 152/485 (31%), Gaps = 30/485 (6%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L P + +S + Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263 R + D CG G FL N + + ++ +G E E V M + Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + D + + +T +K F ++NPP+ + + + + K Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 N + ++ F + N +AAI+L SS L S Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R L +N AIV L F T T + L ++T ++ + + + + I E Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLA 496 K + + +S L+ ++ + R +F Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSD--- 731 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556 + K+ + K + + + E +K + Sbjct: 732 --YKKLKESKIYKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKE 789 Query: 557 IVAFI 561 F+ Sbjct: 790 QKKFL 794 >gi|169830730|ref|YP_001716712.1| hypothetical protein Daud_0539 [Candidatus Desulforudis audaxviator MP104C] gi|169637574|gb|ACA59080.1| hypothetical protein Daud_0539 [Candidatus Desulforudis audaxviator MP104C] Length = 148 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M F FIW A+ L G ++ + V+LP T+LRRL+C LEPT+ V EK Sbjct: 6 MNNFGEK----VAFIWSVADLLRGPYRPNQYKDVLLPMTVLRRLDCVLEPTKDQVLEKIK 61 Query: 61 AFGGSNID 68 S + Sbjct: 62 TLQESKVK 69 >gi|313143599|ref|ZP_07805792.1| restriction modification enzyme [Helicobacter cinaedi CCUG 18818] gi|313128630|gb|EFR46247.1| restriction modification enzyme [Helicobacter cinaedi CCUG 18818] Length = 1211 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 59/389 (15%), Positives = 123/389 (31%), Gaps = 42/389 (10%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L + + + ++ +I + F + + L+ A +L +I + F+ Sbjct: 405 FKKLHANDLKAQIQKHIKELKFYSNNDFAFLEVHNKELFLQNAIVLKEIIELFA-PYKLT 463 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ + N++E +++ + F TP + L P D++ K S + Sbjct: 464 QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLDSMTKASKPL-- 516 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + D CG G FL N + +G E E V + Sbjct: 517 KVLDFACGAGHFLNTYANELKRYIKQDLQEHYKQIYGIEKEYRLSKVAKVSSAMYGQNEI 576 Query: 268 PRRDLSKNIQQGSTLS---------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 NI L+ K F ++NPP+ + + + Sbjct: 577 -------NILYADALATHELENPKTDKGNKQKPQINNHSFDLLIANPPYSV--KGFLETL 627 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + K + ++ F + +AAI+L SS L Sbjct: 628 SAKSKKIYTLFTNDINIETNNAIECF---FIERANQLLRDNAKAAIILPSSIL---NKDG 681 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 R L N AIV L + F T T + L ++ + ++ Sbjct: 682 IYKSTREILFANFDFIAIVELGSQTFGATGTNTIILFLRKKENYTPENTTI----SQDYS 737 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I+N + ++ ++ + + + + + Sbjct: 738 NIKNYIESGNLLRNETYKNYVKAFNAYCD 766 >gi|332559082|ref|ZP_08413404.1| putative restriction endonuclease, N6_Mtase domain protein [Rhodobacter sphaeroides WS8N] gi|332276794|gb|EGJ22109.1| putative restriction endonuclease, N6_Mtase domain protein [Rhodobacter sphaeroides WS8N] Length = 876 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 63/361 (17%), Positives = 121/361 (33%), Gaps = 80/361 (22%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + ++E + + + F TPR V L LL DP + Sbjct: 305 GIDADLNGRLFETFLS--ATMRGKDLGQFFTPRSVAKLGA-LLADPQVDRARM-----EF 356 Query: 209 LYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQE--LEPETHAV 254 + D CGTGGFL + ++ + + + + +G + EP + Sbjct: 357 VLDGCCGTGGFLIEVLSDMWAKINANPVLSETEKANLRRRVAETAIYGIDSAQEPNLARL 416 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-----------------------LFTGKR 291 M + D +I + L K+ Sbjct: 417 ARMNMYLHG-------DGGSSIYEADFLDKNVTDPVQATAEVRAEVRQFREMLLSHPSGL 469 Query: 292 FHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 L+NPPF K +++ ++ + E++ + S++F + L+ Sbjct: 470 VDVVLTNPPFAKVYDRKTERENLILAEYEL-------AATEEKLKSSLMFFERYHDLLK- 521 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATY 406 GGR V+ L +GS +E R +L LI IV+LP D F R+ + T Sbjct: 522 ---IGGRLISVIDDGIL----SGSSYAEFRNYLRRKFLIRGIVSLPGDAFQRSQARVKTS 574 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR--------RIINDDQRRQILDIYVS 458 + IL R + + + + + ++R R + ++ ++ +Y Sbjct: 575 IVILEKRDPTSEQDQGPAFRYACRYVGVDDPKRQRTLPIDVETRRLAKEEIARVSSLYKD 634 Query: 459 R 459 Sbjct: 635 F 635 >gi|224437132|ref|ZP_03658113.1| type II restriction-modification enzyme [Helicobacter cinaedi CCUG 18818] Length = 1171 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 59/389 (15%), Positives = 123/389 (31%), Gaps = 42/389 (10%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L + + + ++ +I + F + + L+ A +L +I + F+ Sbjct: 365 FKKLHANDLKAQIQKHIKELKFYSNNDFAFLEVHNKELFLQNAIVLKEIIELFA-PYKLT 423 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ + N++E +++ + F TP + L P D++ K S + Sbjct: 424 QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLDSMTKASKPL-- 476 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + D CG G FL N + +G E E V + Sbjct: 477 KVLDFACGAGHFLNTYANELKRYIKQDLQEHYKQIYGIEKEYRLSKVAKVSSAMYGQNEI 536 Query: 268 PRRDLSKNIQQGSTLS---------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 NI L+ K F ++NPP+ + + + Sbjct: 537 -------NILYADALATHELENPKTDKGNKQKPQINNHSFDLLIANPPYSV--KGFLETL 587 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + K + ++ F + +AAI+L SS L Sbjct: 588 SAKSKKIYTLFTNDINIETNNAIECF---FIERANQLLRDNAKAAIILPSSIL---NKDG 641 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 R L N AIV L + F T T + L ++ + ++ Sbjct: 642 IYKSTREILFANFDFIAIVELGSQTFGATGTNTIILFLRKKENYTPENTTI----SQDYS 697 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN 461 +I+N + ++ ++ + + + + + Sbjct: 698 NIKNYIESGNLLRNETYKNYVKAFNAYCD 726 >gi|330467197|ref|YP_004404940.1| hypothetical protein VAB18032_16170 [Verrucosispora maris AB-18-032] gi|328810168|gb|AEB44340.1| hypothetical protein VAB18032_16170 [Verrucosispora maris AB-18-032] Length = 696 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 100/274 (36%), Gaps = 36/274 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E+L R+ S + TP V + AL +D T GTG Sbjct: 167 AFEYLHNRYVSSAHSMSGLAGTPDTVAEVMLALA------------ESGANTFDFTSGTG 214 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-- 275 L A + G+ + + QE+ P+ + + + + L + D ++ Sbjct: 215 SILRIAADKALTRGTATR------CYAQEISPQYALITLLRLWLLHLRARRSMDNAEPPV 268 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 ++ G +L D R ++N PFG + R+ GLP ++ Sbjct: 269 VRVGDSLLADALPDLRADVVVANFPFGIHDWGHD-------RLAYDPRWTYGLPPRTEPE 321 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + ++ H L G A ++L + +R L+ + A+VALP Sbjct: 322 LAWVQHALAHLAPS----GTAVVLLPPAAASRPAGR----RVRAELIRRGALRAVVALPA 373 Query: 396 DLFFRTNIATYLWILS-NRKTEERRGKVQLINAT 428 L T I ++W+L+ + G + +++ T Sbjct: 374 GLMPPTAIGLHIWVLTQPDPDQPPPGDILVVDTT 407 >gi|194246429|ref|YP_002004068.1| N-6 DNA methylase [Candidatus Phytoplasma mali] gi|194246857|ref|YP_002004498.1| N-6 DNA methylase [Candidatus Phytoplasma mali] gi|193806786|emb|CAP18213.1| N-6 DNA methylase [Candidatus Phytoplasma mali] gi|193807216|emb|CAP18659.1| N-6 DNA methylase [Candidatus Phytoplasma mali] Length = 785 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 60/385 (15%), Positives = 125/385 (32%), Gaps = 67/385 (17%) Query: 92 GSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPD 148 +++ +++ + +S N K + F LL + + + I + Sbjct: 232 DKQISKDKIQTIVTEYSKYKNNKQLTSPFIKDKKTKTNIPNNLLRNLIDDVNDNILPYIR 291 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++ Y I+ + + +TP + L+ Sbjct: 292 DNKFDILGKFYTQFIKY--AGGDKKTGLVLTPIHITEFFCDLINI----------QPNDI 339 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRRL 264 ++DP CGTGGFL AM + + K G E+ P+ + + M++R Sbjct: 340 VFDPCCGTGGFLVSAMKAMVQNVKYEKNKQAEIKLNQLIGIEIRPDMFSHVCSNMMMRG- 398 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D NI G+ +L K+ + NPP+ ++ Sbjct: 399 ------DGKSNIFHGNCFDDELIKIVKKKKPNISFLNPPYSNGNAEE------------- 439 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 + F+ + N L GG AI S+ L E L Sbjct: 440 -------------QLEFIENSLNCL---TKGGECVAICQMSTALNTKGLTIKE-----RL 478 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL-INATDLWTSIRNEGK- 439 + ++A++++P DLF+ +AT + I + D + + +G+ Sbjct: 479 FQKHTLKAVLSMPEDLFYPVGVATVILIWEAHIPHDSNINTFFGYFKNDGFVKTKYKGRI 538 Query: 440 -KRRIINDDQRRQILDIYVSRENGK 463 + ++ Y ++++ + Sbjct: 539 DINNKWPSIKNEWLI-TYKNKQDKE 562 >gi|25026603|ref|NP_736657.1| hypothetical protein CE0047 [Corynebacterium efficiens YS-314] gi|259508264|ref|ZP_05751164.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23491882|dbj|BAC16857.1| hypothetical protein [Corynebacterium efficiens YS-314] gi|259164152|gb|EEW48706.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 604 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 67/392 (17%), Positives = 115/392 (29%), Gaps = 75/392 (19%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 ++ TP+ + L L+ P +T+ D CG GG L Sbjct: 146 SGRDGGEYSTPKILTDLIADLI-----------PTEPKTVLDFACGAGGTLQAI------ 188 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 H P G ++ A A R + + + + Sbjct: 189 ----HHRFPEATLQGNDINATALATAQA----RAIPGNWTATWT----HRDIIEAGALPA 236 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F SNPPFG AV KE + R+ G+P +D +L + L Sbjct: 237 DSFDLVCSNPPFGL-------AVNKECLEEQPDRWPYGVPSRND-DSKWLQLAHHALTDS 288 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRW------LLENDLIEAIVALPTDLFFRTNI 403 G A I + +S L RR ++ + + A++ALP +LF T I Sbjct: 289 ----GLAIINVFNSALH----------ARRHGSALPAMVADGSLLAVIALPDNLFSNTAI 334 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + L + + + V D + ++ GK ++ +++ Y + G+ Sbjct: 335 PSALVVFTKN-PDNVSDTVLFA-TVDAASRHKSLGK----VSALDTDDLVEAYTAHMAGE 388 Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523 L V P D T L Q+ + + Sbjct: 389 RIPALATA--------VQVPRLELIGADATLLPTYWVAKAHPPQVDDLQATITAAVNAIE 440 Query: 524 QQIYPYGWAESF----VKESIKSNEAKTLKVK 551 + K + K +K Sbjct: 441 PIAAVGQELDELMLSREKIARTIPAIKLPGIK 472 >gi|260642159|ref|ZP_05859273.1| putative type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] gi|260623398|gb|EEX46269.1| putative type I restriction-modification system, M subunit [Bacteroides finegoldii DSM 17565] Length = 368 Score = 94.3 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 100/318 (31%), Gaps = 96/318 (30%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 YE ++ + + + A F TPR+++ +L P + DP CG Sbjct: 3 GTAYETIV---SNTLKQEAGQFFTPRNIIKCMVEML----------DPDQNTRVLDPACG 49 Query: 216 TGGFLTDAMNHVA-----------------------DCGSHHKIPPILVPHGQELEPETH 252 +GGFL ++HV + + + G + +P+ Sbjct: 50 SGGFLVTVLDHVRHKITRNLYPELDEVRLAARVNTPEVDELVRNYAEKMIFGFDFDPDLK 109 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------------------FTGK---- 290 M++ D NI ++L + Sbjct: 110 KAARMNMVMAG-------DGHSNIFNINSLDYPQGDKPDRSLIAEAVNESIKHSNDKDFP 162 Query: 291 ----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 +F +NPPFG K E D + + N +LF+ Sbjct: 163 FGTSEDNAQGKFDMIFTNPPFGAKVEVDVEIARRYKLNSNAP------------EILFIE 210 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 N L+ GG+ IVL L N S +R+W+L + + A V LP + F Sbjct: 211 ACYNFLKP----GGKMGIVLPDGILGNPNTES----VRKWILGHFKLLASVDLPVETFLP 262 Query: 401 -TNIATYLWILSNRKTEE 417 + L L + EE Sbjct: 263 QVGVQASLLFLQKKTAEE 280 >gi|302557220|ref|ZP_07309562.1| type I restriction system adenine methylase [Streptomyces griseoflavus Tu4000] gi|302474838|gb|EFL37931.1| type I restriction system adenine methylase [Streptomyces griseoflavus Tu4000] Length = 563 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 88/275 (32%), Gaps = 43/275 (15%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ L RF V D +T VV D L+DP CG Sbjct: 139 GDVVNGLAERFTESVRRAGSDQVTSPRVVRAVRHFAGDVAADAV---------LFDPACG 189 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 G L HGQE++ + + + + Sbjct: 190 IGTLLLTL-----------GAGQDTRRHGQEVDARSARLAQS-------RAGLGGLTRTE 231 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I G +L D + G + + +PP D R+ G P ++G Sbjct: 232 IAHGDSLRADRWPGLKADLVVCDPPVS-------DTDWGREDLLLDPRWELGTPSRAEGE 284 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + +L H GGR +V+ +S + IR L+ ++ + ALP Sbjct: 285 LAWLQHAYAHTAP----GGRVVMVMPASVAYRKAGR----RIRAELVRRGILTQVTALPP 336 Query: 396 DLFFRTNIATYLWILSNRK-TEERRGKVQLINATD 429 ++ +LW L + ++ V++++ T Sbjct: 337 GTAAAHSLPVHLWHLRRPRTPDDAATTVRMVDLTS 371 >gi|109948199|ref|YP_665427.1| type II restriction modification enzyme methyltransferase [Helicobacter acinonychis str. Sheeba] gi|109715420|emb|CAK00428.1| type II restriction modification enzyme methyltransferase [Helicobacter acinonychis str. Sheeba] Length = 679 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 115/351 (32%), Gaps = 72/351 (20%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 LY+ I +T +M +Y + ++ + +TP V + + LL Sbjct: 321 LYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240 + + D G+ GFL +M + + K Sbjct: 378 VNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKAMKTT 427 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSN 298 G EL E ++ M++R D S I +G+T + + + L N Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETKKKIYEDFKPNILLLN 480 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + M F+ ++ GG AI Sbjct: 481 PPFSHEENG----------------------------MPFIKFGLEHMQK----GGLGAI 508 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ S G + +S + +L+ + A + +PTDLF + T ++I + + Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHTLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHD 563 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 V+ I+ + G + +I+ IY + N K S+ L Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKAGLNAKVSKEL 614 >gi|322376403|ref|ZP_08050896.1| type II restriction modification enzyme methyltransferase [Streptococcus sp. M334] gi|321282210|gb|EFX59217.1| type II restriction modification enzyme methyltransferase [Streptococcus sp. M334] Length = 675 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 62/347 (17%), Positives = 120/347 (34%), Gaps = 74/347 (21%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 F I+ + +M +Y + ++ + +TP V + +L ++ Sbjct: 324 NIFKSIDGFGGHID--IMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQILGITSES 380 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQ 245 + D G+ GFL AM + D G Sbjct: 381 ----------KVMDLATGSAGFLISAMELMIDHANASFGKGTSRANEEIANLKKDNLLGI 430 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGK 303 EL E + + M++R D S I++GS ++ F + + L NPPF Sbjct: 431 ELNAEMYTLATTNMILRG-------DGSSRIEKGSAFNRPESLFMDFKANRVLLNPPFSY 483 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + GLP F+ + +K+ GG AI++ S Sbjct: 484 EEN--------------------GLP--------FIAYGLDKM----ECGGLGAIIIQDS 511 Query: 364 PLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421 AGSG++ + + +L+ + A + +P DLF + T ++I + + Sbjct: 512 ------AGSGKAIKTAQAILKKHTLLASIKMPVDLFIPMAGVQTSIYIFKAHEAHDYDQT 565 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 V+ I+ + G + + ++ IY + + + S+ L Sbjct: 566 VKFIDFRNDGFKRAKRGISEVDNPIQRYQDVIKIYKAGKRAEVSKEL 612 >gi|219883431|ref|YP_002478591.1| N-6 DNA methylase [Cyanothece sp. PCC 7425] gi|219867577|gb|ACL47913.1| N-6 DNA methylase [Cyanothece sp. PCC 7425] Length = 668 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 118/379 (31%), Gaps = 87/379 (22%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-------KESPGM 205 V+ + + +R EG ++TP V A+ E Sbjct: 306 DVLGRLLDVFLR--AKFKPEGMGVYLTPAPVKQAMLAIAFHDIKTETPELLTARGEDGKP 363 Query: 206 IRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPP------ILVPHGQELEPE 250 DPTCG+ GF + AM ++ + S + G + E Sbjct: 364 AFRFCDPTCGSYGFGSVAMGYLERALMDVLGKETSSDIRRDKLFRDMCEYSFVGADNSQE 423 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDK 309 + M + S + + + +NPPFGK K Sbjct: 424 MVTLARVNMALLGAPKAKIFRTS------DSRISEQLKPCSYDLICTNPPFGKLKGPAQN 477 Query: 310 DAVEKEHKNGELGRFGPGL-----------------------PKISDGSM--LFLMHLAN 344 DAV + ++ R G P S + LF+ Sbjct: 478 DAVLEYFQSDLKERKKKGTFDYEPSVDGLALGGKPDNKGIWKPASSGIDLAILFIDRCLQ 537 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END-----------LIEAIVA 392 L+ GGR IVL L SG+ +R +++ + D +++A+++ Sbjct: 538 LLKP----GGRLLIVLPDGVL----CNSGDRYVREYIMGQKDAVTGQFHGGKAIVKAVIS 589 Query: 393 LPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKR 441 LP+D F T T + L RK +E + V + A L ++N + Sbjct: 590 LPSDTFKLSGTGAKTSILYLQKRKANPETPKHFLDEPQKDVFMAVADALGYVVKNNVEDY 649 Query: 442 RIINDDQRRQILDIYVSRE 460 + I+ YV E Sbjct: 650 STGVLNDLVPIVGAYVRGE 668 >gi|225619348|ref|YP_002720574.1| type II restriction-modification enzyme [Brachyspira hyodysenteriae WA1] gi|225214167|gb|ACN82901.1| type II restriction-modification enzyme [Brachyspira hyodysenteriae WA1] Length = 793 Score = 94.3 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 90/591 (15%), Positives = 182/591 (30%), Gaps = 97/591 (16%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + ++++ G D + F G +F S+ L + R L+ + +N Sbjct: 242 AKIQDESEKKKGEKYDFQIFSYKDGNTF--ESDEELFNRINELYRRALKQRLNINDEN-- 297 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + F L K + FS ++ ++ + +E +IR + Sbjct: 298 KLKKSFVVDENKFSLNKLKYTVSEIERFSFVDGKNSFTGKDILGDFFEGIIR---EGFKQ 354 Query: 173 GAEDFMTPRDVVHLA-TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 F T ++V L +D + I + DP+ G+G FL + M + + Sbjct: 355 TKGQFFTHINIVKFMLWGLQIDKLAIDRINNDLEIPYMIDPSAGSGTFLIEYMKFITENI 414 Query: 232 SH-------------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 +G E M++ S Sbjct: 415 KRRFFDELDKSRDVEDKFAQWFQPDHRENKWAKDFIYGIETNFNLGTATKVNMILHGDGS 474 Query: 267 DPRRDLSKNI----------------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + ++ D +F L+NPPF + D Sbjct: 475 SNIFVKDGLLPFNFYSKEQSPNYLKQYDKDSIYNDKNVNGQFDCILTNPPFSVTLDNDTK 534 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 K+ + LF+ L+ GR A VL S Sbjct: 535 NNLKDGFLFGD---------KKNSENLFIERWYQLLK----NNGRFAAVLPESVFDTTEN 581 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR-KTEERRGKVQLINAT 428 IR ++ + I+A+++LP F T+ T + + K E + + Sbjct: 582 ----KYIRIFIYKYFKIKAVISLPQLTFEPFTSTKTSILFAQKKTKEELEQWNEVWKKYS 637 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 D W+ ++ I+D+Y++ ++ ++ ++ + + Sbjct: 638 DEWSKLKTRA-----------ENIIDVYINGKSEAKLTSIN-------KLSEEERKDILY 679 Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF---------VKES 539 L K + + ++ +L+ ++ +I K +G+ S + S Sbjct: 680 RLLKNYIEEYDKSLSILELTKKYEYELKEICKYDNDTKDIFGYVNSHWVFGELSKGLNYS 739 Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD-PVTDVNGEWIPDTNLTE 589 I EA+ + K +K N R + + + V D E I D L + Sbjct: 740 ILMAEAENIGYKRTKRGEKIMPNELYRMNNKGEIIVDDNKKETILDY-LRD 789 >gi|114775501|ref|ZP_01451069.1| type I restriction-modification system methylation subunit [Mariprofundus ferrooxydans PV-1] gi|114553612|gb|EAU55993.1| type I restriction-modification system methylation subunit [Mariprofundus ferrooxydans PV-1] Length = 193 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 16/183 (8%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 S + L ++ K A L G +DF I P L R+ + E +A S+ Sbjct: 2 SLSQLEQYLSKAAWILKGPVDASDFEVYIFPLLLFNRISDVYDE------EFRIALEESD 55 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKA----IFEDFDF 120 D E + + F + TN +E + + IF D + Sbjct: 56 GDKEYALLPEFHRFEIPEGCHWRDVRETSTNVGQAIEKALRGIEQANQEYLYGIFGDAQW 115 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA--EDFM 178 S+ +L LL + ++FS L +V ++ N YE+LI+ F V++ A F+ Sbjct: 116 SNK-NKLSDR-LLVDLVEHFSQYTLGNMSVDPDMLGNAYEYLIKHFADLVNKKATLSFFI 173 Query: 179 TPR 181 +PR Sbjct: 174 SPR 176 >gi|170718170|ref|YP_001785196.1| N-6 DNA methylase [Haemophilus somnus 2336] gi|168826299|gb|ACA31670.1| N-6 DNA methylase [Haemophilus somnus 2336] Length = 513 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 68/344 (19%), Positives = 108/344 (31%), Gaps = 54/344 (15%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLA 187 K L I K S I + +I + +F + + F TP + Sbjct: 154 KNDALLDILKVLSPIRITYSKR------DIIQSFYMKFAKSLYKWDLAQFFTPTPITDFI 207 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 ++ + ++DP CG+ FL A H G + Sbjct: 208 IDVM----------NLKFGEHVFDPACGSADFLVAAFQTARKFNHGH----ADYIWGNDN 253 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 V + M++ D NI++ +L K+++ L NPPFG K + Sbjct: 254 SDNAVQVAILNMVLNG-------DGKTNIKKIDSLETINDDYKQYNLILCNPPFGSKILE 306 Query: 308 DKDAVEKEHKNGE-----LGRF---GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 + V K G F L + +LF+ K + GR AI+ Sbjct: 307 RRTEVLKNFDLGFQWILEKNTFILDKNSLLSQQESGLLFVELCVRKAKKE----GRIAII 362 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTE- 416 L + L G R WLL + I I ALP F + ++ + L RK Sbjct: 363 LPNGYL--GNHSEKFLIFREWLLRHVKIAGICALPRFSFKSSGADVSASILFLEKRKEPL 420 Query: 417 ----ERRGKVQLINATDL--WTSIRNEGK---KRRIINDDQRRQ 451 I + + W + K KR I+ Sbjct: 421 KSSLNSEDYSFFIESIENLGWEAGNKIAKPVYKRNPIDGSFISD 464 >gi|326777761|ref|ZP_08237026.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] gi|326658094|gb|EGE42940.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] Length = 552 Score = 93.9 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 85/271 (31%), Gaps = 43/271 (15%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E L+ RF D +T +V + + DP CG G Sbjct: 129 EQLVERFRDSSRRVGSDQVTSLRLVKAVSHFAGP---------VPAGSVVLDPACGIGTL 179 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L LV GQ+++P + ++ I+ G Sbjct: 180 LLSV-----------GPTEGLVRRGQDIDPAAAGLAG-------ARAELAGQQDTVIETG 221 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 +L D + R L +PP + R+ G P ++G + +L Sbjct: 222 DSLRHDHWPDLRADLVLCDPPTA-------GPDWGREELLLDSRWELGTPSKAEGDLAWL 274 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 H GGR V+ +S + IR ++ ++ +VALP + Sbjct: 275 QHCYAHTAP----GGRVVAVMPASVAYRKAGR----RIRAEMVRRGILTEVVALPPGMVA 326 Query: 400 RTNIATYLWILSNRKTEERRGK-VQLINATD 429 +LWIL + V++++ T Sbjct: 327 SHAQPVHLWILRRPADASGGSESVRMVDLTS 357 >gi|305431923|ref|ZP_07401090.1| type II restriction-modification enzyme [Campylobacter coli JV20] gi|304445007|gb|EFM37653.1| type II restriction-modification enzyme [Campylobacter coli JV20] Length = 737 Score = 93.9 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 72/447 (16%), Positives = 144/447 (32%), Gaps = 34/447 (7%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L+ A +L +I + F+ +L ++ + N++E +++ + F TP + Sbjct: 8 LKNALVLKEIVELFANYKLT-QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEF 63 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQ 245 L P + +S +R + D CG G FL N + + ++ +G Sbjct: 64 IMYSL--PLQEMLSKSSKALR-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGI 120 Query: 246 ELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLS 297 E E V M + + D + + +T +K F ++ Sbjct: 121 EKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIA 180 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+ + + + + KN + ++ F + N +AA Sbjct: 181 NPPYSV--KGFLETLSDKSKNTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAA 235 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 I+L SS L S R L +N AIV L F T T + L ++T + Sbjct: 236 IILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFK 292 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYR 476 + + + + + I E K + + +S L+ Sbjct: 293 QENHLISQDYSLIKERIETENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLA 352 Query: 477 RIKVLRPLRMSFILDKT--GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 ++ + R +F L + + L +L + + + Y Sbjct: 353 ELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLY----- 407 Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFI 561 + E +K + F+ Sbjct: 408 --FSLSLNQEVLIIKSPSDIKEQKKFL 432 >gi|88860311|ref|ZP_01134949.1| putative type I restriction-modification system, methyltransferase subunit [Pseudoalteromonas tunicata D2] gi|88817509|gb|EAR27326.1| putative type I restriction-modification system, methyltransferase subunit [Pseudoalteromonas tunicata D2] Length = 428 Score = 93.9 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 139/378 (36%), Gaps = 50/378 (13%) Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 + + I + D + I + + I + LL + + F+ I+ + Sbjct: 2 INEDYKKAIWNLVDTGRGITDPRNTLDIITTVATCALLNQ--ERFTHIKNMGANAIIPAL 59 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + + L +++ + E + P V+ + + L +P + L D Sbjct: 60 NEVILELRKKYKTAFEHCTEINILPESVITRIVYSIAS-FEDLSAFAPAIRELLIDHAGK 118 Query: 216 TGGFLTDA--MNHVADCGSHHKIP----------------PILVPHGQELEPETHAVCVA 257 G F + A + QEL E+ ++ Sbjct: 119 HGQFGSTAYMEKLITKLVGDASQKTLLDAACGLARTSSLIKTKQTFLQELFLESASLSNR 178 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 +L+ + I G++LS+ F GK+F + PP +K+E + E EH Sbjct: 179 LLLLEGKNLE--------IFTGNSLSEFKFEGKKFDLVVMEPPLAQKFESNFR-TELEHS 229 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + G +P S G +++ ++L N G+A +VL LF G + + Sbjct: 230 PFIITEQGKSIP-TSAGDAIWMQFALHQL----NETGKAYLVLPQGCLFRGGYD---AAV 281 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 R LL ++L++ IVALP+ + T I L +L K + ++ I+ IR+ Sbjct: 282 REHLLNHELVDYIVALPSGVLNGTGIEPVLLVLDKAKVK--GSPIRFID-------IRDI 332 Query: 438 GKKRR---IINDDQRRQI 452 G K + ++ +I Sbjct: 333 GHKNKFHIELSKSDLEEI 350 >gi|281422289|ref|ZP_06253288.1| putative type I restriction modification DNA specificity domain protein [Prevotella copri DSM 18205] gi|281403610|gb|EFB34290.1| putative type I restriction modification DNA specificity domain protein [Prevotella copri DSM 18205] Length = 1297 Score = 93.9 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 116/332 (34%), Gaps = 34/332 (10%) Query: 92 GSTNTRNNLESYIAS---FSDNAKAIFEDFDFSS-TIARLEKAG--LLYKICKNFSGIEL 145 T+ ++ Y + FSDN DF F S +L + +L K+ K I L Sbjct: 349 DPDATKKTIKEYFRALKFFSDN------DFSFISVHNEKLFRQNAVVLRKMVKMLQDIRL 402 Query: 146 HPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 D ++ + +++E + R + + F TP +V + L P + + +++ Sbjct: 403 KTDGTKQNQFLGDLFEGFLNR---GIKQSEGQFFTPMPIVRFIVSSL--PLEHIIRDNED 457 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP--ETHAVCVAGMLIR 262 + + D CG G FLT+ + + ++ L + + + + + + Sbjct: 458 IPWAI-DYACGAGHFLTEYAVRIKEFVEKYRKDIPLEEYYARITGIEKEYRLSK----VS 512 Query: 263 RLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 ++ + NI L ++ ++NPP+ D + E + Sbjct: 513 KVSAFMYGQDDINIVYADALVKHPDVHDGKYEVLVANPPYAVS--GFLDTLTDEQRKHYS 570 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 ++ F + GG A I+L S L + R + Sbjct: 571 LYNANVNTDKNNVIEAF---FIERAAQLMKTGGVAGIILPVSMLNRNGMH---AHAREII 624 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 L+N I A+ + F +T T L + Sbjct: 625 LKNFDIVALAEFGSGTFGQTGTNTVTMFLRRK 656 >gi|290959827|ref|YP_003491009.1| N-methyltransferase [Streptomyces scabiei 87.22] gi|260649353|emb|CBG72468.1| putative N-methyltransferase [Streptomyces scabiei 87.22] Length = 677 Score = 93.5 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 92/277 (33%), Gaps = 46/277 (16%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E L+ R +TP + L L G R++ DP CGTG Sbjct: 170 FEFLLARHLDANPRQYT--LTPAGLAELMAELA------------GPARSVLDPACGTGA 215 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L P +GQ+ E A+ + + + Sbjct: 216 LLHAVA-----------ARPGQELYGQDSSRELAALTAL------RLALGSGNAAVRTAA 258 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G +L D R L +PPF ++ + R+ G P ++ + + Sbjct: 259 GDSLRADAHEPLRAEAVLCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELAW 311 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H +L GG A +++ + SG IR LL + A++ALP Sbjct: 312 VQHALARL----QDGGTAVLLMPPAVASR---RSG-RRIRADLLRRGALRAVIALPVGAA 363 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 NI +LW+L ++ L++ L R Sbjct: 364 PPYNIPLHLWVLRRPGRASVPPELLLVDTGRLVHEGR 400 >gi|315453300|ref|YP_004073570.1| putative N-6 DNA methylase [Helicobacter felis ATCC 49179] gi|315132352|emb|CBY82980.1| putative N-6 DNA methylase [Helicobacter felis ATCC 49179] Length = 810 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 63/344 (18%), Positives = 103/344 (29%), Gaps = 65/344 (18%) Query: 97 RNNLESYIASFSDNAKAIFEDF--DFSSTIARLE----KAGLLYKICKNFSGIELHPDTV 150 R +++ S +F D + + + + L + I + Sbjct: 216 RASIDESDEEVSGRINGLFADIQQKYDDVLNKQDAITFDGKTLKLVVGKLQNICIT--ET 273 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + +E I + F TP++VV L ++ +P T+ Sbjct: 274 DRDSVGDAFEVFIGY---SLKGSQGQFFTPKNVVRLMVEIV----------APDKKHTII 320 Query: 211 DPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 DP CG+ GFL +++ ++ I G E + V A M Sbjct: 321 DPACGSCGFLVESLKYLWHTLDETIENEISRAEEKMALAIKNIRGIEKDSFLTKVGKAYM 380 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWEKDKD 310 I D I +L G+ F SNPPFGK Sbjct: 381 TILG-------DGKGGIFCEDSLELPKNWGELTKSQIKLENFDISFSNPPFGKDIRVTGK 433 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++ K + S LFL L+ GGR AI+L + Sbjct: 434 DKLAQYALNLN-------KKEGNVSTLFLERNLQLLKK----GGRLAIILPETYFHAPST 482 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413 R L IE ++ +P + F N + IL Sbjct: 483 RYV-----REFLYKHNIEWLIDIPHNTFRPHNNAKCIILILQKD 521 >gi|208435340|ref|YP_002267006.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori G27] gi|208433269|gb|ACI28140.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori G27] Length = 679 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 118/351 (33%), Gaps = 72/351 (20%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 LY+ I +T +M +Y + ++ + +TP V + + LL Sbjct: 321 LYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240 + + D G+ GFL +M + + K Sbjct: 378 VNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTIANEKIKNAKTT 427 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSN 298 G EL E ++ M++R D S I +G+T SK ++ + + L N Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETSKKIYEDFKPNILLLN 480 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PF + M F+ +++ GG AI Sbjct: 481 SPFSYEENG----------------------------MPFIKFGLERMQK----GGLGAI 508 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ S G + +S + +L+ + A + +PTDLF + T ++I + + Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHD 563 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 V+ I+ + G + +I+ IY + N K S+ L Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSKEL 614 >gi|218437966|ref|YP_002376295.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] gi|218170694|gb|ACK69427.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] Length = 911 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 78/431 (18%), Positives = 138/431 (32%), Gaps = 94/431 (21%) Query: 80 FYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAK---AIFEDFDF-----------SS 122 FY+ L+ + + + + + Y I ++ DN + +FE + S Sbjct: 229 FYSLVNIILAKIQDESEKEDGQEYGFQIYAYGDNIESSDKVFERINLLYRRALSEKLNIS 288 Query: 123 TIARLEK-----------AGLLYKI--CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 RLEK L+Y I +N+S IE ++ + +E +IR Sbjct: 289 DQKRLEKSYVINEDKFPLNKLIYTIQSLENYSFIEGRSSLDGRDILGDFFEQIIR---DG 345 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVA 228 + F TP +V L A+ + + + DP CG+G FL +AM + Sbjct: 346 FKQTKGQFFTPTSIVKFVLYALQIDQLAIECLNQKLELPFICDPACGSGTFLIEAMKIIT 405 Query: 229 DCGSHHKIPPILV-------------------------PHGQELEPETHAVCVAGMLIRR 263 + + + +G E+ + M++ Sbjct: 406 KEIKYKQKDKVKTSRQVKDRFDDFFQPDHKENRWAERFLYGIEINFDLGTASKVNMILHG 465 Query: 264 LESDPRRDLSK----------------NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 + + I + +L + F +SNPPF + Sbjct: 466 DGASNIFVMDGLLPFRFYTKDKVTSTLQIYKNDSLYFQKEVNEEFDIVISNPPFSVDLDN 525 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 F G K S LF+ L+ GR +VL S Sbjct: 526 QTKNYLNRI-------FLYGTKKNSKN--LFIERWYQILKDR----GRLGVVLPESVFDT 572 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR-KTEERRGKVQLI 425 IR +L + ++A+V+LP F T+ T L + KTE + Sbjct: 573 TEN----KYIRLFLFKYFNVKAVVSLPQITFEPYTSTKTSLLFAQKKTKTEIEQWTKLWE 628 Query: 426 NATDLWTSIRN 436 W++++N Sbjct: 629 QYGKEWSTLKN 639 >gi|308064231|gb|ADO06118.1| type II restriction modification enzyme methyltransferase [Helicobacter pylori Sat464] Length = 679 Score = 93.1 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 70/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + +S + +L+ + A + +PTDLF Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N + S+ L Sbjct: 605 GLNAEVSKEL 614 >gi|34557787|ref|NP_907602.1| Type I restriction enzyme modification subunit [Wolinella succinogenes DSM 1740] gi|34483504|emb|CAE10502.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Wolinella succinogenes] Length = 560 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 54/301 (17%), Positives = 103/301 (34%), Gaps = 58/301 (19%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP++V L +LL +Y+P G G Sbjct: 114 YSTPQEVNELIISLLDIAPKDE----------VYNPCYGMGTLFLSLSKR---------- 153 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----F 292 + G+EL+ + L + ++ L K +F ++ F Sbjct: 154 SKTIRLFGEELDGRLAKIAK-------LMARVGGIQEMHLFVNDILKKPVFKNEKGFRQF 206 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPN 351 + NPPF + RF G+ S ++FL H L+ Sbjct: 207 DKIVCNPPFSAHLGIEY--------LKNDERFSRYGILAKSSPELVFLTHALMHLKQ--- 255 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 R ++ + L E ++R ++E+ +IEAI+ LP ++F + + +L Sbjct: 256 ---RGVFIVRNQTLQKSFL---EEKLRERMVEDRVIEAIIELPKNIFPHQSHDFSILVL- 308 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + I+AT + +GK R+I +IL +Y + ++S++ Sbjct: 309 ----AAHSDSILHIDATSE-RFWQKDGKYNRLIG---IEEILALYRQKRESEYSKLTPIE 360 Query: 472 T 472 Sbjct: 361 E 361 >gi|194466428|ref|ZP_03072415.1| N-6 DNA methylase [Lactobacillus reuteri 100-23] gi|194453464|gb|EDX42361.1| N-6 DNA methylase [Lactobacillus reuteri 100-23] Length = 328 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 101/288 (35%), Gaps = 47/288 (16%) Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 +SNPP+ KW+ A +E RF G+P S+ + F++ +K + Sbjct: 1 MATTISNPPYNMKWQHPFFAQSQE-------RFMLGVPPQSNANYAFILTALSKQDK--- 50 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 A +L + L E I++ L+E + +EA++ LP +F T+I T L I + Sbjct: 51 ----AVFLLPNGVLTTNNKE--EQAIKKSLIEKNYLEAVITLPEKMFESTSIPTSLLIFN 104 Query: 412 NRKTEERRGKVQLINATDLWTSI---------------RNEGKKRRIINDDQRRQILDIY 456 K + + +INA L R KK ++ ++ ++I Sbjct: 105 KEK---KTSNILMINADSLAKEEIREQRGQVGSKSHTSRVYKKKINVLPNEAIKKI---- 157 Query: 457 VSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSF 514 S + G ++ + ++L + + DI L L + Sbjct: 158 ESFLDK------PGDEQGVSKVVPIETIKEQDYVLTPNRYIEMKQEDIQHSSLEKLSEEL 211 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 + ++ + + + K SK AF + Sbjct: 212 NRVSAEKGAVKLTINRKM-ANDLGLLPLIKLLQESAKTSKELNDAFKD 258 >gi|134103044|ref|YP_001108705.1| putative type I restriction system adenine methylase [Saccharopolyspora erythraea NRRL 2338] gi|291005198|ref|ZP_06563171.1| putative type I restriction system adenine methylase [Saccharopolyspora erythraea NRRL 2338] gi|133915667|emb|CAM05780.1| putative type I restriction system adenine methylase [Saccharopolyspora erythraea NRRL 2338] Length = 594 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 90/273 (32%), Gaps = 59/273 (21%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E L R+ S TP V L L G T+ DP CG G Sbjct: 131 FEFLCDRYREAHSRRL--VTTPDAVASLMVRLC------------GAEGTVLDPACGLGT 176 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A P GQE++ A+ A +L+R +++ + Sbjct: 177 LLLAA--------------PASRALGQEVDVPHAAISAARLLLRGTDAE--------VVA 214 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 +L +D F G L +PPF ++ + R+ G+P + + + Sbjct: 215 ADSLREDGFRGSTADAVLCDPPFNERSWGH-------GELTGDPRWEFGVPPRGEPELAW 267 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + H GG AI++ + IR LL + AIV LP Sbjct: 268 VQHCLAHARP----GGSVAILMPPAAASRRPG----KRIRGNLLRAGALRAIVTLPAG-- 317 Query: 399 FRTNIATYLWILSNRKT-EERRGKVQLINATDL 430 LW+L + + L+ A DL Sbjct: 318 -----GNDLWLLRRPAPGDRPPSHLLLLEADDL 345 >gi|308535359|ref|YP_002140040.2| type I restriction/modification system N-6 DNA methyltransferase [Geobacter bemidjiensis Bem] gi|308052704|gb|ACH40244.2| LOW QUALITY PROTEIN: type I restriction/modification system N-6 DNA methyltransferase [Geobacter bemidjiensis Bem] Length = 1221 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 74/421 (17%), Positives = 131/421 (31%), Gaps = 84/421 (19%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101 R L + V + F K+ + + +TNT + L Sbjct: 201 RSLRDLILDMEDEVLANAGVDVFEEVFKLIFTKLYDELTVYSGRHKYLRFRNTNTASELR 260 Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN----FSGIELHPDTVPD-RVMS 156 I + + A +E F L + +E + + V+ Sbjct: 261 DRIQALFEEACDRWEGV-FPP-------GDRLRLTADHLQVCIGSLEKYKLFNSNLDVID 312 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +E+L+ + + TPR V+ + +L +P + ++ D CG+ Sbjct: 313 EAFEYLVSK---SSKGEKGQYFTPRWVIDMCVKML----------NPQVDESMIDTACGS 359 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE---------THAV---CVAGMLIRRL 264 GF A+ V + E +PE A+ + + R L Sbjct: 360 AGFTMHAIFKVWRDILDREGLAASHLFTMERKPEACYDYVREKVFAIDFDEKSVRVARCL 419 Query: 265 ESDPRRDLSKNIQQGSTL-------------SKDLFTGKR-------------------F 292 D N+ +TL D + F Sbjct: 420 NL-IAGDGQTNVMHLNTLDWKKWDETVKEENWNDTYNQGWKKLRKLLIDPKGKDYRAFGF 478 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 ++NPPF ++ E + E G+ + + +LF+ + L Sbjct: 479 DLLMANPPFAGDIKQSDMLSLYEMGHKENGKAESKVGR----DLLFIERNLDFLRP---- 530 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILS 411 GGR AIVL N +G+ IRR++ E+ I A+V L + F T I T + + Sbjct: 531 GGRMAIVLPQGRFNN----AGDKRIRRYIAEHCRILAVVGLHPNTFKPHTGIKTSVLFVQ 586 Query: 412 N 412 Sbjct: 587 K 587 >gi|271963120|ref|YP_003337316.1| type I restriction-modification system methyltransferase subunit-like protein [Streptosporangium roseum DSM 43021] gi|270506295|gb|ACZ84573.1| Type I restriction-modification system methyltransferase subunit-like protein [Streptosporangium roseum DSM 43021] Length = 636 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 55/273 (20%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + +E L R+ S DV L + L T+ DP CG Sbjct: 152 DTFEFLCERYVEAHSRQLSVTRD--DVAALMSRLTGPDRG-------RGKGTVLDPACGV 202 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A + GQE+ + +L+R + + Sbjct: 203 GTLLLHADASL----------------GQEINETNALLTAVRVLLRG--------ATGRV 238 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G +L +D G+ + +PPF ++ + + R+ GLP + + Sbjct: 239 VAGDSLREDGLAGELADAVVCDPPFNERAWGYE-------ELTGDPRWEYGLPPRGESEL 291 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 ++ H + GG AI++ ++ IR LL + A+V L Sbjct: 292 AWVQHCLAHVRP----GGLVAILMPAAAASRRPG----KRIRGNLLRTGALRAVVMLGPG 343 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 LWIL ++ +++AT+ Sbjct: 344 -------GPDLWILRRPDGGRPPSQLLMVDATE 369 >gi|227892026|ref|ZP_04009831.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus salivarius ATCC 11741] gi|227866136|gb|EEJ73557.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus salivarius ATCC 11741] Length = 753 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 75/487 (15%), Positives = 148/487 (30%), Gaps = 70/487 (14%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIA-RLEK-AGLLYKICKNFSGIELHPDTVP 151 L+S + + S I + F F + L + +L +I + + Sbjct: 222 KAINIQLKSRVNNLSKKFSWI-DQFSFIKNLELNLSEYKDILSEIHQKI--YIPFQNEEK 278 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 V+ Y+ + R G ++ +TP + L L D + + D Sbjct: 279 QDVLGRAYKIFLSRSGKIDNKN--IILTPDHIKSLMVKLARLNLDDV----------VLD 326 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIP----PILVPHGQELEPETHAVCVAGMLIRRLESD 267 GTGGFL +AM + + + G EL+ A+ + M + Sbjct: 327 TCTGTGGFLMEAMEKLNNLAKDDENELEKIREHKLIGFELDSTLFALSCSNMFLHG---- 382 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 D N+ +L K T K+ + + + K K + + Sbjct: 383 ---DGRSNMLYRDSLLK---TNKKQKFI----------NQKDADLYKWIKKQKPTKCIIN 426 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 P + + F + LE G+ I++ S L + G + + + LL++ + Sbjct: 427 PPYEKNKPIKFAQQAIDYLEP----NGKLIIIMPSPTLTKNQIGKESTSLTKKLLKSARL 482 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDLW---TSIRNEGKKRRI 443 + ++ +P +F I K E+ +V N + + K Sbjct: 483 DYVIKMPLQIFSEQGRTVNTSIFGFTKTPHEKDDEVLFYNLKEDGLISVQHKGRIDKYNK 542 Query: 444 INDD------------QRRQILDIYVSRENGK-FSRMLDYRTFGYRRI------KVLRPL 484 ND + +I ++G+ + G+ I + + Sbjct: 543 WNDYENQILSAVKNSKEIDRISKKKRIFKDGEVNCAGFEVNENGHNMIKIKDLFTIEKGT 602 Query: 485 RMSFILDKTG-LARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKESIKS 542 S + G + A W+K Q + + + + S Sbjct: 603 LASTNANPDGQYNFVTASSEWKKSDYYDQIGPALVYATKASGSLGKSQYIDGNFVASNLC 662 Query: 543 NEAKTLK 549 N K K Sbjct: 663 NVLKPRK 669 >gi|308062736|gb|ADO04624.1| type II restriction modification enzyme methyltransferase [Helicobacter pylori Cuz20] Length = 679 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTKANEEIKNAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + +S + +L+ + A V +PTDLF Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASVKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N + S+ L Sbjct: 605 GLNAEVSKEL 614 >gi|296395125|ref|YP_003660009.1| N-6 DNA methylase [Segniliparus rotundus DSM 44985] gi|296182272|gb|ADG99178.1| N-6 DNA methylase [Segniliparus rotundus DSM 44985] Length = 819 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 66/392 (16%), Positives = 103/392 (26%), Gaps = 129/392 (32%) Query: 116 EDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 E FDF+ + + A L + + F+ D + +E + R Sbjct: 264 ELFDFTDVLD-ISDATFRALVQRLQRFN-----LSKTGDDIKGIAFERFLGR---TFRGE 314 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL------------- 220 F TPR VV L P + DP G+GGFL Sbjct: 315 LGQFFTPRPVVDFMIEAL----------DPQEGELICDPAAGSGGFLIRAFDHVRSSIAS 364 Query: 221 -----------TDAMNHVADCGSHHKIPPILVP--------------------------- 242 T + Sbjct: 365 DIERQKNDAYATITAEYAQSSTEEQLEQRDRQIDAAFAKLNEELSPTDSTGAPARTRVGL 424 Query: 243 ------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYC 295 +G + EP M++ D I L + RFH Sbjct: 425 LSWDCIYGTDKEPRAARTAKMNMIMHG-------DGHGGIHWHDGLVNINGIFPGRFHVV 477 Query: 296 LSNPPFGKKWEKDKD---------AVEKEHKNGELGRFGP-------------GLP---- 329 ++NPPFG + + + + R+G G P Sbjct: 478 VTNPPFGASVTSAQRIGATTESDVPNDPAYARRQFKRYGDDWKISHDAVVNARGTPILDQ 537 Query: 330 -------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 LF+ N L+ GGR AIVL + L +RRW+ Sbjct: 538 FEIGRGKNSRQTETLFVERCLNLLKP----GGRLAIVLPNGNLNAMSLDW----LRRWVE 589 Query: 383 ENDLIEAIVALPTDL--FFRTNIATYLWILSN 412 + +VALP + F + +++ + L Sbjct: 590 GKAFLRGVVALPPETFKFSKASVSASIVFLDK 621 >gi|32266933|ref|NP_860965.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC 51449] gi|32262985|gb|AAP78031.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC 51449] Length = 1164 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 78/535 (14%), Positives = 152/535 (28%), Gaps = 61/535 (11%) Query: 34 VILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 IL L C + ++ + G D + Y +L Sbjct: 297 YILVDLFL----CKIIDEIQNPQDLQFYYKGIFYDNPFSYCDRLLNLYEKGIETLFKKKV 352 Query: 94 TNTRNNLESYI--------ASFSDNAKAIFED--------FDF---SSTIARLEKAGLLY 134 N + + Y+ F ++ + IF+ F+F + +L Sbjct: 353 VNVQKSEIDYLFESAKRHKGKFKESIEKIFDKQKYFNIKKFNFIEVENEEEFFINFKVLV 412 Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 +I + ++ + +++E + R V + F TP + + L Sbjct: 413 QITNLIQDFYISESE-NNQFLGDLFEGFLNR---AVHQTEGRFFTPTPITNFIINSL--- 465 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 + + D CG G FLT+ + H +G E + V Sbjct: 466 ------PTLSNNAKILDFACGAGHFLTEFIAH----------NKNAKLYGIEKNKDLSKV 509 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + +S + + KD F + F LSNPP+ K + Sbjct: 510 AKTACIFHNPKSKSQIIFQDALDFIKENYKDEFENESFDLILSNPPYSVKG-----FLSN 564 Query: 315 EHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 K + S D + + + GG A+VL S L G Sbjct: 565 LDKALNTFSLSQSIDSKSYDKNNAIECFFVERAKQFLKEGGIFALVLPVSILQKGGI--- 621 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 + R LL + +V L + F T T + K + +L ++ + Sbjct: 622 YEKTRELLLAHFKFLCLVELNSRTFGSTGTQTIILFAKRVKKYDEDLISRLKDSNFSDEA 681 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 + ++ + + D ++ + G FS+ + G + + Sbjct: 682 LSDDFNDKNFLQDYC------DFMGYDYGSFSKFMREAVLGENLKGSNVFKEYFADYESS 735 Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548 + K + + Y ++E + K EA Sbjct: 736 KPKIFKKQKFNESDKKALFEKSSLFEKDLDSKTYKKQYSEFLKSDEYKKAEANLH 790 >gi|288870250|ref|ZP_06409683.1| putative type II restriction-modification enzyme [Clostridium hathewayi DSM 13479] gi|288867882|gb|EFD00181.1| putative type II restriction-modification enzyme [Clostridium hathewayi DSM 13479] Length = 889 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 111/325 (34%), Gaps = 52/325 (16%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 A ++ +I + + + + + N +E L+ + + + A F TP + Sbjct: 9 NAKIVREIVELLQAYKFRYEQKHEF-LGNFFELLL---NTSMKQEAGQFFTPVPITRFII 64 Query: 189 ALLLDPD---DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--------------DCG 231 + L + + ++ T+ D CG+G FLT+ M + D Sbjct: 65 SSLPLKEFVQGKINSRERNVLPTVMDYACGSGHFLTEYMEQLQHVLDEKLDISHAAPDIR 124 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRR--LESDPRRDLSKNIQQGSTLSK----- 284 V + + + L++ + + D NI + L+ Sbjct: 125 KQVSAWQGAVKFAWAK-DSVYGIDLDNRLVKTTKVSAFFNGDGEANIIWANGLANFEKAE 183 Query: 285 ------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 D +F +SNPP+ + K +E S Sbjct: 184 EYRGLLRQTQHYDRKNNGQFDILISNPPYSVEAFKSTLQYGEETFELYDN----ITDNSS 239 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + LF+ + L++ GG A ++L SS L NG S + R + + ++AIV Sbjct: 240 EIECLFVERMKQLLKV----GGWAGVILPSSILSNGGIYS---KAREIIFKYFRVKAIVE 292 Query: 393 LPTDLFFRTNIATYLWILSNRKTEE 417 L + F +T T + L R + Sbjct: 293 LGSGTFMKTGTNTVVLFLERRSDND 317 >gi|327184404|gb|AEA32849.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118] Length = 609 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 39/275 (14%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + DP+ G G + + K P QEL I Sbjct: 132 RKDDKVLDPSSGINGAWLELL----------KNNPNQNMTVQELNEIDAEFAYLNTKILG 181 Query: 264 LESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + + QG TLS + + F ++ PP + KD + Sbjct: 182 -------ATNCIVYQGDTLSDPKYTQDGNLQLFDKIVTFPPINARISKDAIIENR----- 229 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 RF G + G F+ + + L N G+A IV+S PLF G + R+ Sbjct: 230 -FNRFRYGDITYTKGESAFISNAISSL----NQTGKAVIVVSDGPLFQGGKVAS---FRK 281 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT-DLWTSIRNEG 438 +L+++DLIE ++ALP+ L +I ++ N+ + +G++Q INA + W G Sbjct: 282 FLVDHDLIETVIALPSSL-LSYSIIPINILIINKNKTDSKGQIQFINANQNEWYQTDKHG 340 Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472 K RI++ ++I+++Y SR + + S + Sbjct: 341 K--RILSTLGIQKIVELYHSRASVEGKSAIFANTD 373 >gi|260892718|ref|YP_003238815.1| N-6 DNA methylase [Ammonifex degensii KC4] gi|260864859|gb|ACX51965.1| N-6 DNA methylase [Ammonifex degensii KC4] Length = 768 Score = 92.3 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 122/361 (33%), Gaps = 67/361 (18%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + F TPR V+ TAL+ + L + DP CGTGGFL +A Sbjct: 232 AEALRLADGQFFTPRQVIEAGTALVGIRWEDL----------VIDPACGTGGFLIEAFLQ 281 Query: 227 VADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 V +G + + + A M I D S +I +G ++ Sbjct: 282 VLRHFSGDQREAARWAQQHVYGVDRDAVGVKLAKAVMQIVG-------DGSAHIFRGDSI 334 Query: 283 SK---DLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + D RF L+NPPFG+ + G+L R G + + Sbjct: 335 RRHQWDEHYPSLKANLQEGRFDVVLTNPPFGRPLRVAR---------GDLRRAGYTIHRR 385 Query: 332 SDGS--------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 DGS ++FL L+ GGR IVL + F+ WL E Sbjct: 386 PDGSEAESVEIGLVFLDLAHWLLKP----GGRVGIVLPETYFFSTSYHWLFD----WLRE 437 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR--GKVQLINATDLWTSIRNEGKK 440 A+V +P + F + T ++ + E G+V +N + + Sbjct: 438 RFRPLAVVNVPMEAFQQYARAKTNFYVFKKLEAGEDPEGGEVVFLNPRTCGIDPAGKVTE 497 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 + D +D ++ E + + RR+ V P + L LE Sbjct: 498 SNELKDH-----VDAFLRGELPDGGSRVSLKEVYARRVLV--PTYYDTRYVRPLLEFLER 550 Query: 501 D 501 + Sbjct: 551 E 551 >gi|317181155|dbj|BAJ58941.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32] Length = 679 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKNSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMVEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTKANEKIKEAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + +S + +L+ + A + +PTDLF Sbjct: 494 KLGLEYMQK----GTLGAIIIQDSA---GSGQALKSNV--EILKKHTLLASIKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N K S+ L Sbjct: 605 GLNAKVSKEL 614 >gi|307704623|ref|ZP_07641525.1| restriction enzyme BgcI alpha subunit [Streptococcus mitis SK597] gi|307621825|gb|EFO00860.1| restriction enzyme BgcI alpha subunit [Streptococcus mitis SK597] Length = 680 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 115/332 (34%), Gaps = 72/332 (21%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +M +Y + ++ + +TP V + +L ++ + D Sbjct: 342 DIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQILGITSES----------KVMDL 390 Query: 213 TCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQELEPETHAVCVAGML 260 G+ GFL AM + D G EL E + + M+ Sbjct: 391 ATGSVGFLISAMELMIDHANISFGKGTSRANDEIAKLKKDNLLGIELNAEMYTLATTNMI 450 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +R D S I++GS ++ F + + L NPPF + Sbjct: 451 LRG-------DGSSRIEKGSAFNRPESLFMDFKANRVLLNPPFSYEEN------------ 491 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES-EI 377 GLP F+ + +K+ GG AI++ S AGSG++ + Sbjct: 492 --------GLP--------FIAYGLDKM----ERGGLGAIIIQDS------AGSGKAIKT 525 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 + +L+ + + +P DLF + T ++I + + V+ I+ + Sbjct: 526 AQAILKKHTLLTSIKMPVDLFIPMAGVQTSIYIFKAHEAHDYDQTVKFIDFRNDGFKRAK 585 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 G + + ++ IY + + + S+ L Sbjct: 586 RGISEVDNPIQRYQDVIKIYKAGKRAEVSKEL 617 >gi|217031816|ref|ZP_03437319.1| hypothetical protein HPB128_199g24 [Helicobacter pylori B128] gi|298735558|ref|YP_003728079.1| hypothetical protein HPB8_58 [Helicobacter pylori B8] gi|216946468|gb|EEC25070.1| hypothetical protein HPB128_199g24 [Helicobacter pylori B128] gi|298354743|emb|CBI65615.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 679 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 74/430 (17%), Positives = 134/430 (31%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTIANEKIKCMKTTQLLGVELNAEMFSLATTNMILR-------DDGSSLIIKGNT 461 Query: 282 L--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 SK ++ + + L NPPF + M F+ Sbjct: 462 FETSKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + +S + +L+ + A V +PTDLF Sbjct: 494 KFGLEHMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASVKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKSTKRGLNETSNPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N K S+ L Sbjct: 605 GLNAKVSKEL 614 >gi|296268835|ref|YP_003651467.1| N-6 DNA methylase [Thermobispora bispora DSM 43833] gi|296091622|gb|ADG87574.1| N-6 DNA methylase [Thermobispora bispora DSM 43833] Length = 675 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 50/235 (21%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E L RF S +T DV L L + ++ DP CG GG Sbjct: 158 FEFLCERFIEVHSRRLG--LTRPDVAGLMIRLAAADAE-----------SVLDPACGMGG 204 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A GQ++ + +L+R + I Sbjct: 205 LLLAAG--------------APRLLGQDVNHTVAQLAAVRLLLRGRD--------ARIVA 242 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 G L D F G++ + +PPF ++ + R+ G+P + + + Sbjct: 243 GDALRGDGFPGEQVDAVVCDPPFNERAWGH-------AELVGDPRWAYGVPPRGESELAW 295 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + H + GG AI++ S+ S LL + A++ L Sbjct: 296 VQHCLAHVRP----GGLVAILMPSAAAARRSGRRIRSG----LLRAGALRAVITL 342 >gi|283954614|ref|ZP_06372132.1| LOW QUALITY PROTEIN: hypothetical protein C414_000240125 [Campylobacter jejuni subsp. jejuni 414] gi|283793806|gb|EFC32557.1| LOW QUALITY PROTEIN: hypothetical protein C414_000240125 [Campylobacter jejuni subsp. jejuni 414] Length = 1035 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 72/493 (14%), Positives = 142/493 (28%), Gaps = 46/493 (9%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 330 DFKQLKTKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFTNYKLT 389 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIVYSLPLQ---TMLSENSKA 442 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + D CG G FL N + + +G E E V + Sbjct: 443 LKVIDYACGAGHFLNTYANELKRYLKKEELKEYYKNIYGIEKEYRLSKVSKVSSAMYGQN 502 Query: 266 SDPRRDLSKNIQQGSTLS---------------KDLFTGKRFHYCLSNPPFGKKWEKDKD 310 NI L+ K F ++NPP+ + + Sbjct: 503 EI-------NILYADALASFELANTSNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLE 553 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + KN + ++ F + +AAI+L SS L Sbjct: 554 TLSNKSKNTYKLFNDDINIETNNAIECF---FCERANQILKDNAKAAIILPSSIL---NK 607 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 S R L +N AIV L + F T T + L ++T ++ + + + Sbjct: 608 DSIYKNTREILFQNFDFIAIVELGSCTFGATGTNTIILFLRKKETFKQENNFISQDYSLI 667 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 I +E K +++ + L Y + + + Sbjct: 668 LERIESENLKD---SENFSQNYLAAYCDFRKFDKELYENFLNGNLNSNLAVLEAFKDYHN 724 Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548 ++T + + K S +S Q I + E + Sbjct: 725 AFNQTSDYKKLKESKIYKESEDKKSLEDKAFLAYAQAIEK---DKLLYFCLSLKQEVLII 781 Query: 549 KVKASKSFIVAFI 561 K + F+ Sbjct: 782 KSPSDIKEQKKFL 794 >gi|89256323|ref|YP_513685.1| hypothetical protein FTL_0976 [Francisella tularensis subsp. holarctica LVS] gi|115314771|ref|YP_763494.1| type I site-specific deoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|167010846|ref|ZP_02275777.1| type I site-specific deoxyribonuclease [Francisella tularensis subsp. holarctica FSC200] gi|254367657|ref|ZP_04983678.1| hypothetical protein FTHG_00927 [Francisella tularensis subsp. holarctica 257] gi|89144154|emb|CAJ79415.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129670|gb|ABI82857.1| type I site-specific deoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|134253468|gb|EBA52562.1| hypothetical protein FTHG_00927 [Francisella tularensis subsp. holarctica 257] Length = 775 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 87/483 (18%), Positives = 132/483 (27%), Gaps = 131/483 (27%) Query: 42 RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98 ++L+ LE T +++ NI + +F S+ + N Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166 Query: 99 NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139 N + F +N + I FE + + +I ++ Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKREFEKDHIFEPNETIRIRESS 226 Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 F I + V +E + R F TPR VV +L Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233 + L DP G+GGFL A V D Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENI 333 Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 + G + P V M++ Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386 Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318 D I L + RF L+NPPFG KD V +E K Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446 Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360 G+ R +IS +LF+ + L+ GGR IVL Sbjct: 447 IYGDVYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVL 502 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418 L + + R + I IV+LP DLF + + T L L EE+ Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQ 558 Query: 419 RGK 421 + Sbjct: 559 KQD 561 >gi|254369302|ref|ZP_04985314.1| type I site-specific deoxyribonuclease [Francisella tularensis subsp. holarctica FSC022] gi|157122252|gb|EDO66392.1| type I site-specific deoxyribonuclease [Francisella tularensis subsp. holarctica FSC022] Length = 776 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 87/483 (18%), Positives = 132/483 (27%), Gaps = 131/483 (27%) Query: 42 RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98 ++L+ LE T +++ NI + +F S+ + N Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166 Query: 99 NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139 N + F +N + I FE + + +I ++ Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKREFEKDHIFEPNETIRIRESS 226 Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 F I + V +E + R F TPR VV +L Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233 + L DP G+GGFL A V D Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQRKVFGENLENI 333 Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 + G + P V M++ Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386 Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318 D I L + RF L+NPPFG KD V +E K Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446 Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360 G+ R +IS +LF+ + L+ GGR IVL Sbjct: 447 IYGDIYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVL 502 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418 L + + R + I IV+LP DLF + + T L L EE+ Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQ 558 Query: 419 RGK 421 + Sbjct: 559 KQD 561 >gi|156502396|ref|YP_001428461.1| putative N-6 DNA methylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|290952883|ref|ZP_06557504.1| putative N-6 DNA methylase [Francisella tularensis subsp. holarctica URFT1] gi|295313928|ref|ZP_06804493.1| putative N-6 DNA methylase [Francisella tularensis subsp. holarctica URFT1] gi|156252999|gb|ABU61505.1| putative N-6 DNA methylase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 775 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 87/483 (18%), Positives = 132/483 (27%), Gaps = 131/483 (27%) Query: 42 RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98 ++L+ LE T +++ NI + +F S+ + N Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166 Query: 99 NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139 N + F +N + I FE + + +I ++ Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKREFEKDHIFEPNETIRIRESS 226 Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 F I + V +E + R F TPR VV +L Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233 + L DP G+GGFL A V D Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENI 333 Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 + G + P V M++ Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386 Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318 D I L + RF L+NPPFG KD V +E K Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446 Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360 G+ R +IS +LF+ + L+ GGR IVL Sbjct: 447 IYGDVYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVL 502 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418 L + + R + I IV+LP DLF + + T L L EE+ Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQ 558 Query: 419 RGK 421 + Sbjct: 559 KQD 561 >gi|298674140|ref|YP_003725890.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303] gi|298287128|gb|ADI73094.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303] Length = 686 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 68/415 (16%), Positives = 131/415 (31%), Gaps = 70/415 (16%) Query: 35 ILPFTLLRRLECALEPTRSAVREKY--LAFGGSNIDLESFVKVAGYSF--YNTSEYSLST 90 + + + L E + VK +F N Sbjct: 221 VFKLIFTKLYDETLSQHDKNRIEGFLDNELNDEERANYELVKQTLENFNDRNCRVMEFRN 280 Query: 91 LGSTNTR--NNLESYIASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 G T N ++S S + + IF + F + + L S ++ Sbjct: 281 TGQTEIELYNKIQSLFDSAKEKWRGIFQDSSRFELSSSHLS--------VCISSLQDVKL 332 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 V+ +E+L+ + + TPR V+ + +L +P Sbjct: 333 FNSNLLVIDEAFEYLVNKSA---KGEKGQYFTPRHVIDMCVKML----------NPKRGE 379 Query: 208 TLYDPTCGTGGFLTDAMNHVADC------GSHHKIPPILVPHGQELEPETHAVCVA-GML 260 + DP G+ GF + H+ S IL G + + +T V ++ Sbjct: 380 YMIDPAAGSCGFPVHTIFHLTGHLFENTEISDEDQEDILKVFGIDFDEKTVRVARTLNLI 439 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----------------------FHYCLSN 298 E++ S + ++ + + + F ++N Sbjct: 440 AGDGETNVLHLNSLDYERWNEYVNNHNWSQTYGSGYNRLEKLRESRNSNKDFDFDVLMAN 499 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF ++ + + E G+ + + +LF+ + L+ GGR AI Sbjct: 500 PPFAGDIKESRIIHKYELGFKNNGKAYSKIGR----DILFIERNLDFLKS----GGRMAI 551 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412 VL L N S + IR ++ E+ I A+V+L + F T + + Sbjct: 552 VLPQGRLNN----SSDERIREFISEHARILAVVSLDQNTFKPHAGTKTSILFVQK 602 >gi|196229254|ref|ZP_03128119.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428] gi|196226486|gb|EDY20991.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428] Length = 683 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 68/452 (15%), Positives = 130/452 (28%), Gaps = 121/452 (26%) Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFS----------GIELHPDTVPDRVMSNIYEHLI 163 IF+ + + + L + +N + + ++ + Sbjct: 248 IFDK-NVHLQLEQQRNYETLLDLIQNLGPVTDNRGVQIKANGTFADMAADALGRAFDVFL 306 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLD------PDDALFKESPGMIRTLYDPTCGTG 217 R + G ++TP V + P+ + + DP CGT Sbjct: 307 R-GNFDSKGGLGIYLTPAPVKQSMLDIAFHDILAETPELLAAYKGDKPVFRYCDPACGTY 365 Query: 218 GFLTDAMNHVADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 GF A+ + + + G + P + M + Sbjct: 366 GFGVVAVGRLQRALAELNLDDVKRKKLFEDHLTYSFCGADSAPVMVTLARVNMALLGAPK 425 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHK-------- 317 + ++L+ D F +NPPFG K++K + + ++ Sbjct: 426 ARIFYVQ------NSLTTDQLEPGTFDLICTNPPFGTPKFKKGQHEARERYETEMGEILK 479 Query: 318 -----NGELG----------------------RFGPGL-------------------PKI 331 G R+ P + P Sbjct: 480 RFRTDLEPDGDKTAYTFVAGMGWFPIGKKEVYRYTPTVAGKAMGASPDKKGRWTPISPTS 539 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END----- 385 D ++LF+ L+ GGR I+L L SGE +R +++ + D Sbjct: 540 IDPAVLFIDRCLELLKP----GGRLIIILPDGVL----CNSGERYVREYIMGKKDPVTGE 591 Query: 386 ------LIEAIVALPTDLF--FRTNIATYLWILSNRK---------TEERRGKVQLINAT 428 +++A+V+LP+D F T T L R +E + V + A Sbjct: 592 FHGGKAIVKAVVSLPSDTFKLSGTGAKTSYLYLQKRHARPNDPEHFADEPQKDVFMGVAD 651 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 L ++N + + I Y+ E Sbjct: 652 HLGYEVKNNVEDYSKGVPNDLAGITGSYIRGE 683 >gi|217033897|ref|ZP_03439321.1| hypothetical protein HP9810_870g29 [Helicobacter pylori 98-10] gi|216943660|gb|EEC23105.1| hypothetical protein HP9810_870g29 [Helicobacter pylori 98-10] Length = 339 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 108/329 (32%), Gaps = 70/329 (21%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 M +Y + ++ + +TP V + + LL + + D Sbjct: 1 MGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLGVNAKSF----------VMDLAT 49 Query: 215 GTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 G+ GFL +M + + K G EL E ++ M++R Sbjct: 50 GSAGFLISSMVLMVEDIEKTYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILR 109 Query: 263 RLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I +G+T + + + + L NPPF + Sbjct: 110 G-------DGSSLIIKGNTFETNKKIYEDFKPNILLLNPPFSYEENG------------- 149 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M F+ ++ G AI++ S G + +S + Sbjct: 150 ---------------MPFIKFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--E 185 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +L+ + A + +PTDLF + T ++I + + V+ I+ + G Sbjct: 186 ILKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGL 245 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468 + +I+ IY + N K S+ L Sbjct: 246 NETSNPTKRYEEIIKIYKAGLNAKVSKEL 274 >gi|317179649|dbj|BAJ57437.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30] Length = 679 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLKKDSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + +S + +L+ + A + +PTDLF Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N K S+ L Sbjct: 605 GLNAKVSKEL 614 >gi|297380673|gb|ADI35560.1| Restriction enzyme BgcI subunit alpha [Helicobacter pylori v225d] Length = 679 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + +S + +L+ + A + +PTDLF Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N K S+ L Sbjct: 605 GLNAKVSKEL 614 >gi|17230181|ref|NP_486729.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120] gi|17131782|dbj|BAB74388.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120] Length = 145 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 26/164 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +WK+ ++L G + + +L ++ + Sbjct: 1 MAIKKSELYSSLWKSCDELRGGMDASQYKDYVLVLLFVKYVSD----------------K 44 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + + G F + + + + ++ K + + DF++ Sbjct: 45 YAGVADVLIEVPEGGGFQDIVALKGQKDIGDGINKIITNLAEA--NDLKGVIDVADFNNA 102 Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYE 160 +L K L + F L+ D ++ + YE Sbjct: 103 -DKLGKGKEMQDRLSNLVAIFETPALNFSKNRADGDDILGDAYE 145 >gi|56552830|ref|YP_163669.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ZM4] gi|56544404|gb|AAV90558.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ZM4] Length = 672 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 74/420 (17%), Positives = 135/420 (32%), Gaps = 78/420 (18%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRN 98 R L +E V A ++ + Y N+ S + NT Sbjct: 189 FARSLRDLIEDMEDEVLA--NAGVDVFEEVFKLIFTKLYDEMNSHRLGSALRFRNQNTAA 246 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 L++ I + D+AK + RL L ++C S E V+ + Sbjct: 247 QLKTAIQNLFDDAKRKWPGVFLDDERIRLSPDHL--QVCVG-SLEEWKLFNSNLDVIDDA 303 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +E+L+ + + TPR V+ + ++ +P T+ D CG+ G Sbjct: 304 FEYLVSK---SSKGEKGQYFTPRWVIDMCVKMM----------NPKEGETVIDTACGSAG 350 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV---CVAGMLIRRLES 266 F +M HV E +P A+ + + R L Sbjct: 351 FTVHSMFHVWRQIMRAMGREESHLFTMEAKPPRCIDYVRDNVFAIDFDEKSVRVSRCLNL 410 Query: 267 DPRRDLSKNIQQGSTL-------------SKDLFTGKR-------------------FHY 294 D N+ +TL +D + F Sbjct: 411 -IAGDGETNVLHLNTLDWTKWDETVKQDDWQDTYGDGWRRLRKLRENPRQTDYRSFGFDV 469 Query: 295 CLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 ++NPPF + D + N + + + + +LF+ + L+ G Sbjct: 470 LMANPPFAGDIRQSDMLSPYDVAHNEKTQKLEKAVAR----DLLFIERNLDFLKP----G 521 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412 GR A+VL N S + +R+++++ + A+V L + F TN T + + Sbjct: 522 GRMAVVLPQGRFNN----STDQRVRKFIMDRCRVLAVVGLHPNSFKPHTNTKTSVLFVQK 577 >gi|258423213|ref|ZP_05686105.1| predicted protein [Staphylococcus aureus A9635] gi|257846542|gb|EEV70564.1| predicted protein [Staphylococcus aureus A9635] Length = 625 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 86/453 (18%) Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSD 109 + V + L + E F T + L + + + + + Sbjct: 187 KDKVFNEMLKILFIKLMDERNHTSRIADFGITEQEYDEILNHKENDFKVRINNLFNKAKN 246 Query: 110 NAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 N + IF + + ++ L + +L V ++ + + Sbjct: 247 NYQDIFNPNEKINLKLSTLA------FVVGQMQNFDL--SHSSRDVKGLAFQKFV---YA 295 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 +F TP ++ LA ++ +P + T+ DP CGTGGFL A+ HV Sbjct: 296 HQRGDRGEFFTPDPIIELAVKMI----------NPKIDETILDPACGTGGFLVAALKHVE 345 Query: 229 DCGSHHKIPPI------------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 + K G + P+ V M++ D I Sbjct: 346 ESIIDLKAERPIDFEKAKTDYALRKLRGIDFNPDLVKVSKMRMIL-------EDDGHTGI 398 Query: 277 QQGSTLS-------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 Q ++L + L+NPPFG+K + ++++ G Sbjct: 399 FQANSLDTLREIEIQALKSGANNINENSVDIILTNPPFGRKGTITDKDILRQYELGHQWV 458 Query: 324 FGPGLPKISDG-------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + S +LF+ L+ G+ AIVL S L G Sbjct: 459 KNNDSYENSHKVLDDQVPDILFIERCYQFLKNK----GKMAIVLPDSVL----TGPKLQY 510 Query: 377 IRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRG------KVQLINAT 428 +R ++L+ + +V+LP + F N+ + +L ++ + +++ Sbjct: 511 VRNYILKRFKVVGVVSLPYETFIPHGANVKASILLLQKLDSKTMEELNTDGYESFMVDIE 570 Query: 429 DLWTSIRNEG-------KKRRIINDDQRRQILD 454 + G +K + I D+ +ILD Sbjct: 571 KIGYQGNKNGTLIYKIDEKGQYILDENGNKILD 603 >gi|260061351|ref|YP_003194431.1| type I restriction-modification system, M subunit [Robiginitalea biformata HTCC2501] gi|88785483|gb|EAR16652.1| type I restriction-modification system, M subunit [Robiginitalea biformata HTCC2501] Length = 894 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 130/383 (33%), Gaps = 57/383 (14%) Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 D R + L + + +E +P + + +E L+ + V + M Sbjct: 90 DTYRIFERRIENFQLSESKELLKKLEDLYLNLPPALYAKAFETLLEKIVKGVERKRGEIM 149 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 P ++ + + + +++P G G F + Sbjct: 150 LPSEIAKFLINI----------SNLHGGKRVFNPFAGLGSFGIFLND------------S 187 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + HGQE++ T AV + ++ + + R+ +SN Sbjct: 188 TINYHGQEIDDLTWAVTTLRLDAHDKLNNSSFEKV------DSFLS-WPNTNRYDLIISN 240 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPFG + K + EK++K E L + EL + G AI Sbjct: 241 PPFGLRLGKHQQTTEKKYKTVE--------------QFLLTQGI----ELLTDCGKMIAI 282 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V + G +R+ L+E DL+EA+++ P LF ++N + ++S K ER Sbjct: 283 VPNGLLYSKSNKG-----VRQRLIEEDLVEAVISFPGGLFLQSNSPFSVIVISKTK--ER 335 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 G V + + N + ++ +D + L VS + SR D F I Sbjct: 336 PGSVLFFPGENYAQPLNNGHYQ--LMLEDITKDFLRRSVSIQTSDHSRT-DEPPFNQLEI 392 Query: 479 KVLRPLRMSFILDKTGLARLEAD 501 + LD E + Sbjct: 393 DKDSIKSQDYSLDHERYRFEEIE 415 >gi|302554826|ref|ZP_07307168.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces viridochromogenes DSM 40736] gi|302472444|gb|EFL35537.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces viridochromogenes DSM 40736] Length = 556 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 90/276 (32%), Gaps = 45/276 (16%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++ L RF D +T VV F + T++DP CG Sbjct: 131 DLVNGLTDRFMDSARRAGSDQVTSERVVRAVCH---------FAPELPVGATVFDPACGI 181 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L GQE++ ++ L ++ ++ Sbjct: 182 GVLLLSVA-----------SESGARCRGQEMDTDSARFAQ-------LRAELLGRSEVSV 223 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 G +L D + R + +PP G + R+ G P ++G + Sbjct: 224 VAGDSLRADAWPDLRADLIVCDPPAGVTEWG-------REQLLLDSRWELGTPSKAEGEL 276 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 +L H GG+ +V+ +S + IR L+ ++ +VALP Sbjct: 277 AWLQHAYAHTAP----GGQVLMVMPASVAYRKAGR----RIRSELVRRGIVRQVVALPPG 328 Query: 397 LFFRTNIATYLWILSNRKTEERRG---KVQLINATD 429 ++ +LW L + V++++ TD Sbjct: 329 TATSHSLPVHLWCLRRPENTSGTDTHHTVRMVDLTD 364 >gi|254372942|ref|ZP_04988431.1| hypothetical protein FTCG_00513 [Francisella tularensis subsp. novicida GA99-3549] gi|151570669|gb|EDN36323.1| hypothetical protein FTCG_00513 [Francisella novicida GA99-3549] Length = 789 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 77/440 (17%), Positives = 114/440 (25%), Gaps = 126/440 (28%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 E + + ++ E + TL + + +I + Sbjct: 251 EKQKQKFIKAGDFQQAEELEREILSLKK-----AIPPSYMQTLFKEVKKAFEKDHIFESN 305 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + + + F + LEK L V +E + R Sbjct: 306 ETIR--IRESSFEDIVKELEKYNL---------------TKTGADVKGIAFETFLGR--- 345 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 F TPR VV +L + L DP G+GGFL A V Sbjct: 346 TFRGELGQFFTPRKVVEFMVDVLDIKQNELI----------CDPCAGSGGFLIRAFEIVK 395 Query: 229 DCGSH--------------------------------------------HKIPPILVPHG 244 D + G Sbjct: 396 DKIDEKYIRLKKLKQREVFGENLENIDDEKLKAKYQQVINELNEKQKLEIQYLSKSSIFG 455 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGK 303 + P V M++ D I L + RF L+NPPFG Sbjct: 456 TDANPRMARVSKMNMIMHG-------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGT 508 Query: 304 KWEKDKDAVEKEHKN----------------------------GELGRFGPGLPKISDG- 334 KD V +E K G+ R +IS Sbjct: 509 NLGKDNSKVSEEDKYTDEKMIAHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISGAT 568 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 +LF+ + L+ GGR IVL L + + R + I IV+LP Sbjct: 569 EVLFVERCLDLLKS----GGRMGIVLPEGVLNSSNLQ----KAREYFESRAKILLIVSLP 620 Query: 395 TDLFFRTN--IATYLWILSN 412 DLF + + T L L Sbjct: 621 QDLFVSSGATVKTSLVFLKK 640 >gi|332800245|ref|YP_004461744.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1] gi|332697980|gb|AEE92437.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1] Length = 627 Score = 91.2 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 151/482 (31%), Gaps = 109/482 (22%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 E R E+Y I E+F ++ + Y +L N + + YI + Sbjct: 176 EIFRYEYVEEYKDAAVQEIR-EAFKEIKDHPDYVA---TLDNGEKANIFSQ-DEYIKLEN 230 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-RFG 167 N + + + L+ L I + + + V+ +++ L+R +F Sbjct: 231 PNI--------YIAVLKALQD---LGPIKIDGVERPANLMDLTGDVLGRVFDVLLRGKF- 278 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPG-----MIRTLYDPTCGTGGFL 220 E G ++TPR V A ++L D K + D CG+ GFL Sbjct: 279 -ENKGGMGIYLTPRQVTEAAAEMVLHDLTKDGAAKLIERDSEGIPTLRIGDLCCGSAGFL 337 Query: 221 TDA----MNHVADCGSHHKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDP 268 ++ + + K G + P M + P Sbjct: 338 IKMLQKTERYLLNKLTGDKKQYEELFEEIKEHSFIGADNSPGMVLKARINMALHGAPKCP 397 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------------------WEK 307 ++L F L+NPPF K + Sbjct: 398 IFQTR------NSLMNTRLEPGTFDAILTNPPFSKTGVSKTIKKGRTTVENPEGVEIIKY 451 Query: 308 DKDAVEKEHKN-----------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 ++++ +N R D ++LF+ L+ GG Sbjct: 452 YSSDIDEDGQNRMNPYGLSLGSKPDSRGKWKEVNSVDPAVLFIDRNLQLLKP----GGLL 507 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDL------------IEAIVALPTDLFF--RTN 402 IV+ L N SG+ +R +++ ++A+++LP + F Sbjct: 508 MIVVPDGILSN----SGDKYVREYIMGKKNPVTGEFEGGKAILKAVISLPQETFALSGAG 563 Query: 403 IATYLWILSNRK-TEERRGKVQLINATDLWTSIR-----NEGKKRRIINDDQRRQILDIY 456 T L L ++ E++G V + A ++ +++ G + +I++ Y Sbjct: 564 AKTSLLYLKKKEHPGEKQGPVFMAVADEVGFTVKQNVEVQLGDDHNDLL-----KIVEAY 618 Query: 457 VS 458 Sbjct: 619 KK 620 >gi|206896558|ref|YP_002247704.1| type I restriction/modification enzyme [Coprothermobacter proteolyticus DSM 5265] gi|206739175|gb|ACI18253.1| type I restriction/modification enzyme [Coprothermobacter proteolyticus DSM 5265] Length = 678 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 66/426 (15%), Positives = 123/426 (28%), Gaps = 101/426 (23%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------------HKIPP 238 + +YDP GTGGF+ A V + ++ Sbjct: 6 IGEKIYDPAAGTGGFILRAFEVVKSKIDNLVKAGMRVNESTAAYNGVQFDEAEMLYRKLK 65 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCL 296 + E P+ + + + M++ D N+ + +L +++ L Sbjct: 66 EESLYAVEKAPDVYKLALMNMILHN-------DGKSNLFEADSLDNRAQLEHKEKYDVVL 118 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGG 354 +NPP+G + E K E LF+ H+ L P Sbjct: 119 TNPPYGPLAQSRVGTFEFHAKRYEA---------------LFIQHIMAALRPSEPGKKRS 163 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 RA +++ LF S IR LL ++A+ ++P +F + + T + Sbjct: 164 RAVVIILDKILF--DNSSVFKNIRMKLLREFDLKAVFSMPAGIFQPYSGVKTTVLYFEKP 221 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 EE E KK+ K +D + Sbjct: 222 TKEEWD-----------------ETKKQNAYT----------------TKQVLFVDVKED 248 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 G+ RP+ +F D + E + W+D L +++ + + Sbjct: 249 GFTLTTQRRPINGAFQGDDPNI--YEPPCGNLPKAVEVFRRWIDWLNNPTKELPDFIDND 306 Query: 534 SFVKESIKSNEAKTLKVKASKSFI----VAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589 +I+ + K + + + G I + Sbjct: 307 FCWTATIEEIKTKDYNLNPGLYRKTIKGKQKWEVVSLR----EICDIQKGTSITKADT-- 360 Query: 590 YE-NVP 594 E NVP Sbjct: 361 VEGNVP 366 >gi|238898673|ref|YP_002924354.1| putative restriction endonuclease, N6_Mtase domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466432|gb|ACQ68206.1| putative restriction endonuclease, N6_Mtase domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 872 Score = 90.8 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 75/416 (18%), Positives = 132/416 (31%), Gaps = 86/416 (20%) Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 I + K IFE D + + + + + + ++E + Sbjct: 249 IEISTKKKKRIFEKDDQINLTP-----ETINGVVSKLEHL--FLFGIDADLNGRLFETFL 301 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + TPR VV L AL DA + +YD CGTGGFL D Sbjct: 302 S--ATMRGKDLGQYFTPRSVVKLGVALAGLKIDA---QDISRSDRVYDGCCGTGGFLIDV 356 Query: 224 MNHV------------ADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPR 269 + + + G ++ +P + M + Sbjct: 357 FADMWSKIEKNPSLSKEKKEEYKQAIAYGHIFGADIGRDPNLSRIARLNMYLHG------ 410 Query: 270 RDLSKNIQQGSTLSK--DLFTGKR--------------------FHYCLSNPPFGKKWEK 307 D I L K + + F ++NPPF KK+ Sbjct: 411 -DGGSCIYNIDALDKELPVHKTDKPELLAEKEQMRNIYANKEGFFDVIITNPPFAKKYSI 469 Query: 308 DKDAVEKEHKNGELGR---------FGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAA 357 K +++++ R + G K +++F+ + L+ GGR Sbjct: 470 GKSKDKEKNEISNAERILSQYSLKTYDAGKVKTELRSNLMFMERYYDVLKK----GGRLL 525 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT--NIATYLWILSNRKT 415 V+ L S R WL E +I A+V+LP D F R+ + T + IL+ + T Sbjct: 526 TVIDDGILNGKD----YSWFRDWLREKFIINAVVSLPGDAFQRSMDRVKTSILILTKKHT 581 Query: 416 EERRGKVQLI---------NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 E + + T + K++ ++ I Y +G Sbjct: 582 ENESQPSIFMYPCVFVGIDDPARARTLPIDAHNKKK--AKEEIEDISHEYQKFTSG 635 >gi|317182677|dbj|BAJ60461.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57] Length = 679 Score = 90.8 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 131/430 (30%), Gaps = 92/430 (21%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + E S + + SF S+ T+ + + S K Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLKKDSSITKQ 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 IF LY+ I +T +M +Y + ++ + Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229 +TP V + + LL + + D G+ GFL +M + + Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408 Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K G EL E ++ M++R D S I +G+T Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461 Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + + + L NPPF + M F+ Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 ++ G AI++ S G + S + +L+ + A + +PTDLF Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALRSNV--EILKKHSLLASIKMPTDLFM 544 Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T ++I + + V+ I+ + G + +I+ IY + Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604 Query: 459 RENGKFSRML 468 N K S+ L Sbjct: 605 GLNAKVSKEL 614 >gi|71893975|ref|YP_279421.1| hypothetical protein MHJ_0627 [Mycoplasma hyopneumoniae J] gi|71852102|gb|AAZ44710.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J] Length = 787 Score = 90.8 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 75/498 (15%), Positives = 152/498 (30%), Gaps = 107/498 (21%) Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 NL++Y+ + + IFE + I+ + ++ I + + N Sbjct: 213 QNLQNYLYNSTFKTVDIFELNNIVELISNV------------YNLINISHKNYKGHDIMN 260 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 + + R++ S ++ + TP + L L+ + DPTCG+G Sbjct: 261 AFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGSG 311 Query: 218 GFLTDA-------------------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 FLT+A K G EL + Sbjct: 312 TFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQACKDIKNNKLIGIELNEFNATLAGIN 371 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ML+ D S NI Q + ++ L NPPF +K Sbjct: 372 MLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES------------ 412 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + F+ L+ G+ A ++ S L + E R Sbjct: 413 ----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLKR 452 Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 +++ + I++LP D+F + T + +L E+ + K+Q Sbjct: 453 IFMMAK--VSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIK-KIQ------------KL 497 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSR----MLDYRTFGYRRIKVLRPLRMSFILDK- 492 K++ I + + L + + F F + ++ + L+ F + Sbjct: 498 ASKKKEIEEHTQNIFL---IDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQA 554 Query: 493 -TGLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPYG-WAESFVKESIKSNEAKTL 548 R + ++++ + + + + K M + K N +K Sbjct: 555 LERNLRFDEELSFERFNTNRTFDIEESVFKKYMKENFASKVLSGIENQVILKKKNLSKYK 614 Query: 549 KVKASKSFIVAFINAFGR 566 +K I ++ + Sbjct: 615 NIKFKFFAIDKILDFISK 632 >gi|330937292|gb|EGH41303.1| type I restriction-modification system DNA methylase [Pseudomonas syringae pv. pisi str. 1704B] Length = 199 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------EPTRSA 54 ++ +W A L G ++ +L L+ + +P+ Sbjct: 2 TSEEFKKTLWDTANKLRGSVSAAEYKYPVLGLVFLKYVSDLYDTQAGVIQDRLADPSSEL 61 Query: 55 VRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 E + A + + F+ +E TL + N + A Sbjct: 62 YIEDAELRAESAAIFVEDKTFFTQDNVFWVPAEAKFETLLQSAAAANFAQLLDK----AM 117 Query: 113 AIFEDFDFS------STIARLE-KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIR 164 + E + S +RLE + G L ++ + + ++ P V +YE+ + Sbjct: 118 GLIESENLSLKGVLYREFSRLELEPGKLGELFELIAKLKFDPKEHGSRDVFGEVYEYFLG 177 Query: 165 RFGSEVSEGAEDFMTPRDV 183 + A+ PR V Sbjct: 178 QCALNEG-PAQASSIPRKV 195 >gi|194246656|ref|YP_002004295.1| N-6 DNA methylase [Candidatus Phytoplasma mali] gi|193807013|emb|CAP18449.1| N-6 DNA methylase [Candidatus Phytoplasma mali] Length = 702 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 141/472 (29%), Gaps = 81/472 (17%) Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L + N + Y+ K++ D +L ++ N + + Sbjct: 135 LLNQNINDEKIKYLHEQMCLIKSLLGDNGLEII------KDVLEELKTNIYHLLDSKNKY 188 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 ++ N YE + ++ + +TPR + L T L+ + + Sbjct: 189 SYDIIGNFYEVFL-KYAGVTNVKNGIVLTPRHITELFTKLIDISSTDV----------VL 237 Query: 211 DPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 DP CGTGGFL MN + D G + +P + + ++ ML R Sbjct: 238 DPCCGTGGFLIAGMNSIIDKLDNKNEKEINKIKQNQIIGFDKDPTMYTLSISNMLFRG-- 295 Query: 266 SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D I S++ K+ NPP+ K Sbjct: 296 -----DGKSQIYNLDFFSEEVDKKIKEGTKKPTIGFINPPYAGKSTPIN----------- 339 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 P + L +L GR ++ S N IR Sbjct: 340 --------PTKKEIEFL--------EKLLKLVDGRVVMIAPLSTYINDNP------IRNR 377 Query: 381 LLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLW-TSIRNEG 438 +L+ +E I+ +P +F + T + I + +V N D +N+G Sbjct: 378 ILKKHTLEKIIQMPKKIFEPNASTHTAISIFKTNIPHNNK-EVDFYNLEDDGLVLFKNKG 436 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498 + R + N S+ D + +IK +SF KT L Sbjct: 437 RVDRFHKWGDIEK------DFLNKFHSKYYDGYNYLKHQIK-ENDEWISFAYVKTNYNHL 489 Query: 499 EAD---ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES-FVKESIKSNEAK 546 +T +K L IL +I V KSN K Sbjct: 490 TEKDFLLTIKKYVIFQIKKDLGILNKNFDEITLLEKLNQKIVFTPKKSNITK 541 >gi|296242623|ref|YP_003650110.1| N-6 DNA methylase [Thermosphaera aggregans DSM 11486] gi|296095207|gb|ADG91158.1| N-6 DNA methylase [Thermosphaera aggregans DSM 11486] Length = 1095 Score = 90.4 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 62/369 (16%), Positives = 117/369 (31%), Gaps = 54/369 (14%) Query: 100 LESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L Y + + F+ + +E +L I + +E H V+ Sbjct: 293 LREYFDKAVEATRDFQAVFETGIYDEVDLVENEEVLKAIDWLINYLEEHRIEKLGDVVGF 352 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE LI E F TPR + L + D + DP CG+G Sbjct: 353 IYEDLI---PGEERHQLGQFYTPRPIAELIVKWCVRSPDDR----------VLDPGCGSG 399 Query: 218 GFLTDAMNHVADCG------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRL- 264 FL +A +A+ + HG +L + + ++ + Sbjct: 400 TFLVEAYKRLAELKLKKPWSEIKHVPGDVHRQILRQLHGVDLNEFPAHLTAMNLAMKNVR 459 Query: 265 ----ESDPRRDLSKNIQQGSTLSKDLF----TGKR--------FHYCLSNPPFGK-KWEK 307 E I G + G++ F + NPP+ Sbjct: 460 APSPEMYVFVRDYFTIMPGHQVLTPYKVRTVEGEKPVEVVFKDFDAVVGNPPYTPWNQIP 519 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPL 365 ++ G++ R ++ G++ +F+ + + + GGR +++S S L Sbjct: 520 EETREIILELYGKVLRNYNLRKFVTGGALPGIFVPWIVHSAKFLRE-GGRLGMIISDSWL 578 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN--RKTEERRGKVQ 423 ++L +N + AI+ L +F I T + +L K E + Sbjct: 579 GTQYGVG----FVKYLADNFKVVAIIDLAERVFKAPLIGTCIILLEKTSNKNERDDNSIV 634 Query: 424 LINATDLWT 432 + + Sbjct: 635 FVYLKKQYD 643 >gi|307638192|gb|ADN80642.1| type I restriction-modification system DNA-methyl transferase subunit M [Helicobacter pylori 908] gi|325998379|gb|ADZ50587.1| Type I restriction enzyme modification subunit [Helicobacter pylori 2017] Length = 506 Score = 90.4 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 89/213 (41%), Gaps = 15/213 (7%) Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++H+ L+ G+ A++L LF G A E IR+ LL I+ ++ L +LF Sbjct: 1 MLHIIKSLKDT----GKGAVILPHGVLFRGNA---EGVIRKNLLMKGYIKGVIGLAPNLF 53 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + T+I + +L R+G V +I+A+ + + +G K R + D ++++D + + Sbjct: 54 YGTSIPACVIVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNA 108 Query: 459 RENGK-FSRMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 + +S+M+ + R + L+K A + + K + + Sbjct: 109 YKEIPYYSKMVSLEEISANDYNLNIPRYIASKRELEKDLFALINSPSYLPKNEIKAYAPY 168 Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548 + K + ++ E + + K L Sbjct: 169 FQVFKELKNTLFKKSDKEGYYALKTECENIKEL 201 >gi|294787234|ref|ZP_06752487.1| putative restriction enzyme alpha subunit [Parascardovia denticolens F0305] gi|315227217|ref|ZP_07869004.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|294484590|gb|EFG32225.1| putative restriction enzyme alpha subunit [Parascardovia denticolens F0305] gi|315119667|gb|EFT82800.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 622 Score = 90.4 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 53/342 (15%), Positives = 109/342 (31%), Gaps = 45/342 (13%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE-GAEDFMTPRDVVHLATALL 191 L + + + + ++ F V + TP + + Sbjct: 257 LRTLLEYIDSNVVPYINNKNTAGQDLLNLFFTTFNKYVGKSDKNQAFTPDHICDFMCKAI 316 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELE 248 + DP CG+G FL AM D + + +G E E Sbjct: 317 GV----------SKNSRVLDPCCGSGAFLVRAMVDAMDDCDTEEEREKVKREQIYGIEYE 366 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEK 307 + + MLI D + NI Q S +K + + L NPP+ + Sbjct: 367 DGAYGLSSTNMLIH-------SDGNSNIIQDSMFNKAKWIESNDINTVLMNPPYNATKKF 419 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 A K+ + G+ F+ ++A + A++L Sbjct: 420 CDPAYVKQWGKTKKEDPSKGIH--------FVEYIAKHVNPTAK----MAVLLPMQAAI- 466 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILS-NRKTEERRGKVQL- 424 + + ++ +L N ++A+ +LP ++F+ + I ++K E+ + Sbjct: 467 -GTSNEIKDFKKKMLANYTLDAVFSLPNEMFYPGASAVACCMIFDLSQKHEKANRETFFG 525 Query: 425 INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRE 460 D + + G + + Q L++Y +R+ Sbjct: 526 YFKDDKFIKRKGLGRVEQTDSQGNSLWAQTEEQWLNLYRNRK 567 >gi|3511126|gb|AAC33717.1| HaeIV restriction/modification system [Haemophilus aegyptius ATCC 11116] Length = 953 Score = 90.4 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%) Query: 91 LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136 + N + + + + E F ++ A L+ A +L +I Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + I+L + + + +++E + + V + F TP +V + L Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253 K +P + D CG G FLT+ + + +G E E Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308 V + + NI L+++ F ++NPP+ + Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + E K + + F K + + G A IVL SS L NG Sbjct: 553 LSTIFDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 + R LL++ + AI + F +T T L + Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651 >gi|319775884|ref|YP_004138372.1| HaeIV restriction/modification system [Haemophilus influenzae F3047] gi|317450475|emb|CBY86692.1| HaeIV restriction/modification system [Haemophilus influenzae F3047] Length = 1062 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%) Query: 91 LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136 + N + + + + E F ++ A L+ A +L +I Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + I+L + + + +++E + + V + F TP +V + L Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253 K +P + D CG G FLT+ + + +G E E Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308 V + + NI L+++ F ++NPP+ + Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + E K + + F K + + G A IVL SS L NG Sbjct: 553 LSTISDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 + R LL++ + AI + F +T T L + Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651 >gi|304387519|ref|ZP_07369708.1| type I restriction-modification system DNA-methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338406|gb|EFM04527.1| type I restriction-modification system DNA-methyltransferase [Neisseria meningitidis ATCC 13091] Length = 215 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 31/173 (17%) Query: 32 GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 +L L+ + +GG I+L AG +F + L Sbjct: 21 KNYVLTLLFLKYVSD------------KHKYGGGMIELH-----AGTTF-----DDIVKL 58 Query: 92 GST-NTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKA----GLLYKICKNFSGIE 144 +T + + L IA ++ + K + + DF+ +L K L ++ F + Sbjct: 59 KNTADIGDRLNKIIAQIAEANDLKGVIDVTDFNDE-DKLGKGKEMIDRLSRLVGIFKKLN 117 Query: 145 LHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 L + D + + YE+L+R F +E + F TP +V + ++ D Sbjct: 118 LSSNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISAD 170 >gi|257457139|ref|ZP_05622316.1| DNA methylase-type I restriction-modification system [Treponema vincentii ATCC 35580] gi|257445518|gb|EEV20584.1| DNA methylase-type I restriction-modification system [Treponema vincentii ATCC 35580] Length = 670 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 73/466 (15%), Positives = 138/466 (29%), Gaps = 95/466 (20%) Query: 44 LECALEP--------TRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGS 93 L L ++ + + + ++ E F + + L Sbjct: 180 LSDILSERWTIDDLISKDKLLTEKKSLKDLILEMEDEVLANAGVDVFEEVFKLIFTKLYD 239 Query: 94 T---------NTR-NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKN 139 + N D + +F+ + A +L + Sbjct: 240 EMESGRNQVRHLEFRNYGDTETELKDKIQKLFDKAKNKWDGVFSQDAKILLSPSHLSVCV 299 Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 S ++ V+ + +E+L+ + + TPR V+ + +L Sbjct: 300 SSLQDVKLFNSNLDVVDDAFEYLMSK---SSKGEKGQYFTPRYVIDMCVKML-------- 348 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---------LEPE 250 +P T+ DP G+ GF + +V K + + Sbjct: 349 --NPKADETMIDPASGSCGFPVHTIFYVWKQILKEKGIEQSHLFTSQEKPAECTDYVNDN 406 Query: 251 THAV---CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---------------- 291 A+ A + R L D N+ +TL + + Sbjct: 407 VFAIDFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEDTTKTEDWTDTYNEGWKKF 465 Query: 292 --------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 F ++NPPF ++ + + E G++ + + +L Sbjct: 466 KKLRTIKNSNYSFEFDILMANPPFAGDIKEQRIIAKYELGKNARGKYQSNVGR----DIL 521 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ N L+ GGR AIVL N S + IR ++ E I A+V L ++ Sbjct: 522 FIERNLNFLKP----GGRMAIVLPQGRFNN----SSDKYIRDFITERCRILAVVGLHGNV 573 Query: 398 FF-RTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKK 440 F T T + + K ++ + AT S N G K Sbjct: 574 FKPHTGTKTSVLFVQKWDDKLCPKKEDYPIFFATMQEPSKDNSGDK 619 >gi|312874784|ref|ZP_07734803.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b] gi|311089529|gb|EFQ47954.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b] Length = 624 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 108/361 (29%), Gaps = 49/361 (13%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE----- 175 S + + A L Y + + + + L+ F + ++ Sbjct: 243 SKVLDDQDIASLTYDELQKILEFINNNIIPFINDSNTAGQDLLNLFFTTFNKYIGKSDKN 302 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---S 232 TP + + ++ DP G+G FL AM D Sbjct: 303 QAFTPDHICDFMCKAVGVNKNSRI----------LDPCSGSGAFLVRAMTDAMDDCDTEE 352 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291 + G E E + MLI D + N+ Q S + + K Sbjct: 353 EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 405 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L NPP+ + K K+ D S F H + Sbjct: 406 INIVLMNPPYNATRKFCDPEYVKSWKSS----------NKEDPSKGF--HFVEYVARHIP 453 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL 410 + A++L S + ++ +L+N +EA+ +LP ++F+ + I Sbjct: 454 ANSKIAVLLPMQAAI--GTSSEVKKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMIF 511 Query: 411 S-NRKTEERRGKVQL-INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRENG 462 ++K + D + + G + + + LD+Y +++ Sbjct: 512 DLSQKHARSNTETFFGYFKEDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKEV 571 Query: 463 K 463 Sbjct: 572 P 572 >gi|329123732|ref|ZP_08252292.1| type II restriction-modification enzyme [Haemophilus aegyptius ATCC 11116] gi|327469931|gb|EGF15396.1| type II restriction-modification enzyme [Haemophilus aegyptius ATCC 11116] Length = 911 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%) Query: 91 LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136 + N + + + + E F ++ A L+ A +L +I Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + I+L + + + +++E + + V + F TP +V + L Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253 K +P + D CG G FLT+ + + +G E E Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308 V + + NI L+++ F ++NPP+ + Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + E K + + F K + + G A IVL SS L NG Sbjct: 553 LSTISDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 + R LL++ + AI + F +T T L + Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651 >gi|329121926|ref|ZP_08250539.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965] gi|327467372|gb|EGF12871.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965] Length = 674 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 81/416 (19%), Positives = 125/416 (30%), Gaps = 101/416 (24%) Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIAR 126 + FY TSE + G +N +E K IFE D + R Sbjct: 207 EDERNIPKPLEFYATSEERSNRDGQLTVKNRIEKIFERVKKEKKNAKIFEANDGINLHPR 266 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I L + + YE ++ + + +F TPR+V+ + Sbjct: 267 -----TLSYIVSELQKYSLLNTRID--IKGKAYEEIVG---ANLRGDRGEFFTPRNVMQM 316 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------------- 227 ++ +P + + D +CGTGGF+ AM H Sbjct: 317 VVEMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLKSEFTKDIGKDKGNW 366 Query: 228 -----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 G ++ P+ M++ D S NI Q ++L Sbjct: 367 NDYEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVMNN-------DGSGNILQINSL 419 Query: 283 SKDLFTGKR------------------------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318 F ++NPPFG K A+ + + Sbjct: 420 LPPHEWTDDFKTRLSSALQIDKKSIMNQYDIGFFDVIVTNPPFGSKIPIKDHAILSQFEL 479 Query: 319 GELGRFGPGLPKISDGSM------------LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 R K +M LF+ L+ GGR IVL + L Sbjct: 480 ---ARIWNHNKKTGKWTMTDRYQSSVSPEILFIERCYQFLKP----GGRMGIVLPDALL- 531 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRGK 421 G IR WL++N I A + L D F T + IL + EE + Sbjct: 532 ---GSPGTGYIREWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEEISKE 584 >gi|307637134|gb|ADN79584.1| typeI restriction enzyme-M protein [Helicobacter pylori 908] gi|325995725|gb|ADZ51130.1| type I restriction enzyme M protein [Helicobacter pylori 2018] gi|325997321|gb|ADZ49529.1| type I restriction enzyme M protein [Helicobacter pylori 2017] Length = 381 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 60/378 (15%), Positives = 122/378 (32%), Gaps = 69/378 (18%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTR-----SAVREKYLAFGGSNIDLESFVKVAGYSFY 81 ++ +I L + L E + Y F G + Sbjct: 32 DGNEYK-IITQCFLYKFLCDKFEFFFEQEFPNKTIRDYKDFNGEEKEDFFLTLSDKQLPK 90 Query: 82 NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127 + L+ L + +N L++ S N +F T L Sbjct: 91 LAYDELLNYLFEKHFNDNDLHLKLDAIFNRISSNNAKLFNTKSTDKTTIALFESVSQYIN 150 Query: 128 EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178 E++ L KNF+ + + + I+E+L++ + + ++ Sbjct: 151 EESKRANFTRALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + + LL+ P +YDP+ GTG L + + Sbjct: 211 TPLSIASIIAKLLVI--------KPTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295 + Q++ ++ + +++ L R +G+TL+ + + + Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHSKDHKGKMDFI 309 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348 +SNPPF + + + + + F G+P +D S LF H N L Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSP 364 Query: 349 PPNGGGRAAIVLSSSPLF 366 G+ AI++ + + Sbjct: 365 K----GKGAIIVPTGFIS 378 >gi|254674214|emb|CBA09998.1| type I restriction-modification system, M subunit [Neisseria meningitidis alpha275] Length = 215 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 31/173 (17%) Query: 32 GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 +L L+ + +GG I+L + +T+ + L Sbjct: 21 KNYVLTLLFLKYVSD------------KHKYGGGMIELHA----------DTTFDDIVKL 58 Query: 92 GST-NTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKA----GLLYKICKNFSGIE 144 +T + + L IA ++ + K + + DF+ +L K L ++ F + Sbjct: 59 KNTADIGDRLNKIIAQIAEANDLKGVIDVADFNDE-DKLGKGKEMIDRLSRLVGIFEKLN 117 Query: 145 LHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 L + D + + YE+L+R F +E + F TP +V + ++ D Sbjct: 118 LSSNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISAD 170 >gi|319896580|ref|YP_004134773.1| haeiv restriction/modification system [Haemophilus influenzae F3031] gi|317432082|emb|CBY80432.1| HaeIV restriction/modification system [Haemophilus influenzae F3031] Length = 1062 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%) Query: 91 LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136 + N + + + + E F ++ A L+ A +L +I Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + I+L + + + +++E + + V + F TP +V + L Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253 K +P + D CG G FLT+ + + +G E E Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308 V + + NI L+++ F ++NPP+ + Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + E K + + F K + + G A IVL SS L NG Sbjct: 553 LSTISDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 + R LL++ + AI + F +T T L + Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651 >gi|240047665|ref|YP_002961053.1| hypothetical protein MCJ_005510 [Mycoplasma conjunctivae HRC/581] gi|239985237|emb|CAT05250.1| HYPOTHETICAL Restriction enzyme BgcI subunit alpha [Mycoplasma conjunctivae] Length = 777 Score = 90.0 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 158/481 (32%), Gaps = 64/481 (13%) Query: 82 NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-- 139 N + L +N + NAK E SS + ++ L Y+ + Sbjct: 195 NGKSKDILNLIKDIIKNKIND-----DQNAKEKLEVT--SSVLDDMQLVNLKYENLQRII 247 Query: 140 -FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE-----GAEDFMTPRDVVHLATALLLD 193 F E+ P E L+ F + ++ TP + +L+ Sbjct: 248 YFIEKEIIPFIDEKSNYG---EDLLNLFFTTFNKYVQKDDKNQAFTPSHITDFMASLVQI 304 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---ILVPHGQELEPE 250 +++ + DPTCG+G FL AM+ + K+ G E E Sbjct: 305 NENSR----------VLDPTCGSGSFLVQAMSQMIKNIDDPKLKQKIKREQIFGIESEYI 354 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDK 309 ++ MLI D NI S ++ K + L NPPF K Sbjct: 355 AFSLASTNMLIH-------DDGLSNIVLDSCFERREWIESKNINAVLMNPPFNGKNMPSD 407 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 V++ S + F+ +AN ++ G A +L + Sbjct: 408 FTVKENTGMD------------STKGLAFVEFVANSVKTK---GALLATILPLATAIGRD 452 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQL-INA 427 E + + +L ++A+ ++P DLF + + + + K +R Sbjct: 453 QIIKEYK--KKMLAKHTLKAVFSMPNDLFHPGASASVCIMLFELNKPHIKRNATFFGYYK 510 Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS----RMLDYRTFGYRRIKVLR 482 D + +N G+ + + ++ L+ Y+ + +FS + ++ Sbjct: 511 DDGFIKKKNLGRVEKKDWNLTKQLWLETYLQSKEIPEFSVLENVDHNDEWLAEAYMETDY 570 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPL-HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 ++ KT L + L + D LK +++ + ++ F + K Sbjct: 571 NQLQAWDFSKTIRDYLSFKLKNGILEKISDNKIIQDNLKLNVKEWKYFQISDLFEVKKAK 630 Query: 542 S 542 + Sbjct: 631 N 631 >gi|315653963|ref|ZP_07906879.1| restriction enzyme alpha subunit [Lactobacillus iners ATCC 55195] gi|315488659|gb|EFU78305.1| restriction enzyme alpha subunit [Lactobacillus iners ATCC 55195] Length = 624 Score = 89.6 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 108/361 (29%), Gaps = 49/361 (13%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE----- 175 S + + A L Y + + + + L+ F + ++ Sbjct: 243 SKVLDDQDIASLTYDELQKILEFINNNIIPFINDSNTAGQDLLNLFFTTFNKYIGKSDKN 302 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---S 232 TP + + ++ DP G+G FL AM D Sbjct: 303 QAFTPDHICDFMCKAVGVNKNSRI----------LDPCSGSGAFLVRAMTDAMDDCDTEE 352 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291 + G E E + MLI D + N+ Q S + + K Sbjct: 353 EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 405 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L NPP+ + K K+ D S F H + Sbjct: 406 INIVLMNPPYNATRKFCDPEYVKSWKSS----------NKEDPSKGF--HFVEYVARHIP 453 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL 410 + A++L S + ++ +L+N +EA+ +LP ++F+ + I Sbjct: 454 ANSKIAVLLPMQAAI--GTSSEVKKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMIF 511 Query: 411 S-NRKTEERRGKVQL-INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRENG 462 ++K + D + + G + + + LD+Y +++ Sbjct: 512 DLSQKHARSNTETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKEV 571 Query: 463 K 463 Sbjct: 572 P 572 >gi|146291265|ref|YP_001181689.1| site-specific DNA-methyltransferase, type I modification [Shewanella putrefaciens CN-32] gi|145562955|gb|ABP73890.1| site-specific DNA-methyltransferase, type I modification [Shewanella putrefaciens CN-32] Length = 234 Score = 89.6 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 54/245 (22%) Query: 1 MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56 M + L + +W A+ L + +L ++ + A + + ++ Sbjct: 1 MNQQEQQFLKELESKLWTAADKLRSTLDAAQYKYAVLGLIFVKYVSDAFKLRQEEIKADL 60 Query: 57 ---------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------- 94 E+ LA + + F+ +E L Sbjct: 61 ANPDHEYYLDPADFSEEELAAEIAVELEQRDFYTEKNVFWLPTESRWQFLQDNGPRVIGG 120 Query: 95 ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138 + +N I + K + + I + L ++ Sbjct: 121 ADLEIDGKVKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSALKIDQ----AKLNELIN 176 Query: 139 NFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + I + ++ ++YE+++ +F + F + ++L + Sbjct: 177 LIATIPFDHKSLNSKDILGHVYEYMLGQFALAEGKKGGQFY-------IMSSLFFTNESH 229 Query: 198 LFKES 202 L K + Sbjct: 230 LKKPA 234 >gi|88606674|dbj|BAE79804.1| HP1472-M of type II restriction and modification system [Helicobacter pylori] Length = 679 Score = 89.6 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 61/351 (17%), Positives = 115/351 (32%), Gaps = 72/351 (20%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 LY+ I +T +M +Y + ++ + +TP V + + LL Sbjct: 321 LYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240 + + D G+ GFL +M + + K Sbjct: 378 VNAKSF----------VMDLATGSAGFLISSMVLMVEDIEKTYGKNTTKANEKIKDAKTT 427 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSN 298 G EL E ++ M++R D S I +G+T + + + + L N Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETNKKIYEDFKPNILLLN 480 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PPF + M F+ ++ G AI Sbjct: 481 PPFIYEENG----------------------------MPFIKFGLEYMQK----GALGAI 508 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ S G + +S + +L+ + A + +PTDLF + T ++I + + Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHD 563 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 V+ I+ + G + +I+ IY + N K S+ L Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSKEL 614 >gi|254384451|ref|ZP_04999792.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces sp. Mg1] gi|194343337|gb|EDX24303.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces sp. Mg1] Length = 561 Score = 89.6 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 81/253 (32%), Gaps = 42/253 (16%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E L R V D +T ++ F + T+ DP CG G Sbjct: 137 EGLATRITDSVGRSGSDHVTSERILRAL---------RHFAGTLPADATVMDPACGIGTL 187 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L L GQE EP + + L +D ++ +G Sbjct: 188 LLTV-----------GPRYGLKRFGQEREPHSARLAQ-------LRADLGGQADVSVTEG 229 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 +L D + + +PP G R+ G P ++G + +L Sbjct: 230 DSLCADQWPQVCADLVVCDPPVGVTDWG-------REALLLDSRWEFGTPPKAEGELAWL 282 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 H GGR +V+ +S + IR L+ ++ +VALP + Sbjct: 283 QHAYAHTAP----GGRVLMVMPASVAYRKAGR----RIRAELVRRGVLTQVVALPGGVAA 334 Query: 400 RTNIATYLWILSN 412 + ++W L+ Sbjct: 335 SHALPVHVWQLTR 347 >gi|315453693|ref|YP_004073963.1| Type II restriction-modification enzyme [Helicobacter felis ATCC 49179] gi|315132745|emb|CBY83373.1| Type II restriction-modification enzyme [Helicobacter felis ATCC 49179] Length = 1627 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 64/425 (15%), Positives = 122/425 (28%), Gaps = 65/425 (15%) Query: 19 AEDLW----GDFKHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFV 73 A L G+++++ IL L + ++ + + + Sbjct: 275 ATILRHHSIGNYENS---FYILVDLFLCKVMDELQNEGKDEEEQSLDFYYKGPAADSPLK 331 Query: 74 KVAGY-SFYNTSEYSL-----STLGSTNTRNNLES---YIASFSDNAKAIFE---DFDFS 121 Y L + ++ Y F + A+F+ F+ Sbjct: 332 YCDRLLDLYAKGVEELFKKKVVNVKKEEIAKLFDTAKRYKGKFKKDLDALFDQQKYFNIK 391 Query: 122 STIARLE--------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 +L ++ + + ++ + +++E + R + + Sbjct: 392 KFNFIEIENEEEFQLNFKILVQVADLIKKFYIC-KSENNQFLGDLFEGFLNR---HIHQT 447 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP + + L +P + D CG G FLT +A Sbjct: 448 EGRFFTPTPITNFIIHSL-----PPLTSNPK----VLDFACGAGHFLT---EFMARH--- 492 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLE---SDPRRDLSKNIQQGSTLSKDLFTGK 290 +G E + V + + +D +I + F + Sbjct: 493 ----KDAKVYGIEKNKDLSKVAKLACIFHNPKSPSLIIFQDALDHIHHTHS---QEFEME 545 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELP 349 F Y LSNPP+ K + ++ F+ + L+ Sbjct: 546 SFDYILSNPPYSVKGFLSTLDSSVIKSYELHHSVEEKSYESNNAIECFFIERAWHFLKE- 604 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GG A++L S L G + R LLE+ I IV L + F T T + Sbjct: 605 ---GGVFALILPVSVLQKGGI---YEKTRTLLLEHFKILCIVELNSRTFGSTGTQTIILC 658 Query: 410 LSNRK 414 K Sbjct: 659 AQKLK 663 >gi|312872393|ref|ZP_07732463.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1] gi|311092216|gb|EFQ50590.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1] Length = 329 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 58/280 (20%) Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +SNPP+ KWE + RF P S+ + F+ +++ Sbjct: 4 LISNPPYNIKWEPYE-----------DKRFIPESAPKSNANYAFIQTALAEIDHQ----- 47 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 A +L S L + E EIR+WLL+ I+ ++ LP +F T I+ L +L+ +K Sbjct: 48 -AVFLLPRSVLSSSNKK--EKEIRKWLLKEGYIQGVIELPERMFESTPISVCLLVLNKKK 104 Query: 415 TEERRGKVQLINATDLWTSI---------------RNEGKKRRIINDDQRRQILDIYVSR 459 + V +I+A ++ R KK +++D ++ + Sbjct: 105 ---KTTDVMMIDAREMADKEERYQKGQYGSRAHTNRTYEKKVNVLSDKTIETLVQCINTG 161 Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 K S R + + + + L + E + Sbjct: 162 TCIKIS----------RLVHLELIEKEDWQLVPSRYIAYENKNNSCR-----------SF 200 Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559 + +++ I + VK + AK LK+ + + Sbjct: 201 EDIVRDINRIAKLRNAVKLVVNETLAKKLKLDITSEDLKK 240 >gi|296126598|ref|YP_003633850.1| restriction modification system DNA specificity domain protein [Brachyspira murdochii DSM 12563] gi|296018414|gb|ADG71651.1| restriction modification system DNA specificity domain protein [Brachyspira murdochii DSM 12563] Length = 1134 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 79/478 (16%), Positives = 151/478 (31%), Gaps = 74/478 (15%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF++ DF ++ ++ + G + + + +E+L+ + + Sbjct: 350 DIFDERDFKR------NTSIVKEVVELLQGYQFRYTEKHQF-LGDFFENLL---NTGFKQ 399 Query: 173 GAEDFMTPRDVVHLATA---LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 F TPR + + + + + I + D CG+G FLT+ M+ + Sbjct: 400 EVGQFFTPRILTRFIVQSIPIKKIIKEKILSGNKDFIPKVIDFACGSGHFLTEVMDIIQK 459 Query: 230 CGSHHKIPPILVPHG-----QELEPETHAVCVAGMLIRRLESD------------PRRDL 272 + + + + A I +E+D D Sbjct: 460 SLLEIGKENLDILKTVRTILERYNDDPDQFIWAEKNIYGIENDYRLVKTTKLSCFFNGDG 519 Query: 273 SKNI-------------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 I +G+ L +RF +SNPP+ A+ N Sbjct: 520 EAQILQTSGIYPFNHDDYRGTLLDTINKENERFDIVVSNPPYSVSG---FKAIMDRSSNN 576 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + + ++F+ + L+ G AAI+L S L N + R Sbjct: 577 AFDLYKDITDSSKEIEVIFIERMKQLLKP----NGYAAIILPVSILQNDGL---YEKART 629 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATDLWTSIRNEG 438 + EN ++ IV L ++ F T T + L R K K S N Sbjct: 630 IIFENFYLKGIVKLGSNAFQATGTNTVVLFLQKREKPIRLENK----------ESYINMC 679 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF---ILDKTGL 495 K ++I+ I+D + KF G I R ++ +LD+ + Sbjct: 680 KDKKIL-------IIDTGEKDDEKKFLGYSFSNRRGSEGITEERNKEGTYLGSLLDENDI 732 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + + + ++K + + IY + F E+ L +K Sbjct: 733 NNNNINKANYYMIQAFYDNYPKVVKELEKNIYVLDLKDCFNFEADNFVNRINLNIKKK 790 >gi|187931838|ref|YP_001891823.1| N-6 DNA Methylase family [Francisella tularensis subsp. mediasiatica FSC147] gi|187712747|gb|ACD31044.1| N-6 DNA Methylase family [Francisella tularensis subsp. mediasiatica FSC147] Length = 695 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 97/604 (16%), Positives = 162/604 (26%), Gaps = 142/604 (23%) Query: 42 RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98 ++L+ LE T +++ NI + +F S+ + N Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166 Query: 99 NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139 N + F +N + I FE + + +I ++ Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKIEFEKDHIFEPNETIRIRESS 226 Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 F I + V +E + R F TPR VV +L Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233 + L DP G+GGFL A V D Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKNLKQREVFGENLENI 333 Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 + G + P V M++ Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386 Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318 D I L + RF L+NPPFG KD V +E K Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446 Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360 G+ R +IS +LF+ + L+ GGR IVL Sbjct: 447 IYGDVYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMDIVL 502 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418 L + + R + I IV+LP DLF + + T L L Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKK------ 552 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 + + + +++ + +K + + + E + R + Sbjct: 553 ----FTVEEQEQYETVKTQAEKEAEQKYQPQLLEIQQKIDFEKSIKQHITKLRKALKTK- 607 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + LD+T + E ++ + + Q I E + E Sbjct: 608 TAKNKENLQLTLDETIVEHTEYKKKVKQYKAQLKELEAKQQEEAKQLIKQKFDYEIPIAE 667 Query: 539 SIKS 542 K+ Sbjct: 668 IEKA 671 >gi|153869117|ref|ZP_01998802.1| Type I Restriction Enzyme [Beggiatoa sp. PS] gi|152074333|gb|EDN71198.1| Type I Restriction Enzyme [Beggiatoa sp. PS] Length = 689 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 87/513 (16%), Positives = 149/513 (29%), Gaps = 114/513 (22%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---- 99 LE ++ +K L ++ E F + + + L T N Sbjct: 179 LEDLIKEDALNQGKKTLKDVIEEMEDEVLANAGVDVFEESFKLIFTKLYDEFTSANSHKR 238 Query: 100 ---------------LESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGI 143 + + I +NA+ +E F + I L Sbjct: 239 KRPLQFRVGVDTEAEVHAKIQKLFENAQEKWEGVFPPDAQIELSVSH--LPTCISYLQKY 296 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 +L + V+ +E+LI + + TPR V+ L +L +P Sbjct: 297 KLFNSNLE--VIDEAFEYLINK---TSKGEKGQYFTPRYVIDLCVKML----------NP 341 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH---------AV 254 T+ D G+ GF ++ HV + E +P + A+ Sbjct: 342 KPAETVIDTAAGSSGFTVHSIFHVWKQLLQQEGKDETHLFTAENKPSHYVDYVRKKVFAI 401 Query: 255 ---CVAGMLIRRLESDPRRDLSKNIQQGSTL-----------------SKDLFT------ 288 A + R L D N+ +TL D F Sbjct: 402 DFDEKAVRVARCLNL-IAGDGQTNVLHLNTLDWERWKETTGELKWLDRYNDGFKRLRKLT 460 Query: 289 ---------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335 F ++NPPF + + + E R + S + Sbjct: 461 VDKKGENYRDFTFDVLMANPPFAGDIKDTRLIHKYELGKKADSRAVTQSTQKSSKNKGWQ 520 Query: 336 ------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 +LF+ + L+ GGR AIVL N S + IR ++ + I A Sbjct: 521 DKISRHILFIERNLHFLKP----GGRMAIVLPQGVFNN----SSDYYIRDFIAKQCRILA 572 Query: 390 IVALPTDLFF-RTNIATYLWILSNRKTEERRG---------KVQLINATDLWTSIRNEGK 439 +V L + F T T + + E + G + AT N G Sbjct: 573 VVGLHPNTFKPHTGTKTSVLFVQKWNDEPKAGALCPHCENYPIFF--ATQQSMGKNNSGD 630 Query: 440 KRRIINDDQRRQILDIY-VSRENGK-FSRMLDY 470 K + + ++D + FS L+ Sbjct: 631 KIFARDAETGELLVDKHGHKFVEHDLFSTDLEN 663 >gi|332885870|gb|EGK06116.1| hypothetical protein HMPREF9456_02380 [Dysgonomonas mossii DSM 22836] Length = 1005 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 81/469 (17%), Positives = 151/469 (32%), Gaps = 110/469 (23%) Query: 32 GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 ++++ L++ L E + G ++ F K YN + +L Sbjct: 199 KRILMMLILIKYL----EERKDE-------DGNGALNPNEFYKA-----YNPDDPTL--- 239 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-------KICKNFSGIE 144 N+++++ K + F+ I L+ L + ++F + Sbjct: 240 --EGVLENVDTFVNV----LKELSSKEHFNGQIFLLDDNELSALKEKVDLTLFQHFVKGD 293 Query: 145 LHPDTVPDRVMS-------------------NIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + T ++ + +IYE + + TP +V Sbjct: 294 VSFFTEGNQGIGQMSLWRLYQFNYLPIELISHIYEDFLAD--ENGQKKKGVVYTPPYLVQ 351 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------ADCG 231 + D P + DP CG+G FL A + + Sbjct: 352 FLIDQCMPLKD------PKQNFKILDPACGSGIFLVGAFKRMIQWWRVQNNWKKPKKENI 405 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---------TL 282 K G +LE E + + + L+S R++ +N+ Sbjct: 406 QELKDLLQKNIFGCDLEDEAVTLSYFSLGLALLDSLSPREIWRNVHFDDLIGYNLYQGDF 465 Query: 283 SKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS--ML 337 K L GK FH + NPPF ++ + V+K+ K R P I D +L Sbjct: 466 FKTLHEGKIKSDFHLIIGNPPFNSEFTDWANLVDKKEKENNTER-----PDIPDNQIALL 520 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALP 394 FL L + GG I+ S L+N + R++L E I+ +L Sbjct: 521 FLEQSIKLLRV---GGNCCLILPSGPVLYNTNTH----DFRKYLFEQYYIKGFFDFTSLR 573 Query: 395 TDLFFRTNI---ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LF ++ + + + R + R V ++ + G+K Sbjct: 574 AKLFIGSSSSAKPAVVTVFAERADHKERSCV-----HSIFRRTKASGEK 617 >gi|300811623|ref|ZP_07092101.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497391|gb|EFK32435.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 203 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 20/209 (9%) Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LP S +++ L G A++L + LF A E EI+++L E Sbjct: 2 LPPKSKADYAYVLRGLQHLSED----GTMAVMLPTGALFRSAA---EREIQKYLSEKQKT 54 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIIND 446 A++ALP T I T L I +K+ ++ I+A+ ++N + K+ + + Sbjct: 55 HAVIALPQGARNYTAIYTVLLIFKKKKS----DQILFIDASR--DGVKNATRLKQNFLTE 108 Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 + +IL Y +RE +SR++ P +D +++ + T Sbjct: 109 EGFTKILHTYRNREEVDRYSRLVSLDEIRENDYNWNIP----CYIDTFSEKKIDVEATMS 164 Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAES 534 LS Q K M++ + + E+ Sbjct: 165 SLSA-KQKVIETSKKEMIELLNKFDTPEA 192 >gi|222444445|ref|ZP_03606960.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii DSM 2375] gi|222434010|gb|EEE41175.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii DSM 2375] Length = 101 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%) Query: 6 GSAASLANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 + + ANFIW A+ L G +K D+ KVILPFT+L+R + L ++ AV + Y Sbjct: 2 SNFSEKANFIWSIADSILRGYYKRNDYQKVILPFTVLKRFDSVLPYSKDAVVQAYEENKN 61 Query: 65 SNIDLESFVKVA------GYSFYNTSEYSLSTLGST 94 + + + FYN S Y L Sbjct: 62 DDGLELILMSESVDENGKKLGFYNYSPYDFKKLLED 97 >gi|257064729|ref|YP_003144401.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] gi|256792382|gb|ACV23052.1| type I restriction-modification system methyltransferase subunit [Slackia heliotrinireducens DSM 20476] Length = 654 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 77/403 (19%), Positives = 124/403 (30%), Gaps = 100/403 (24%) Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139 FY TS+ S G + + + I FD + I ++ L I Sbjct: 218 FYATSDERGSRDGQLTVQKRVGAIFEKVKKRHGKI---FDEDAVIELTPRS--LAYIVSE 272 Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 G L + + YE ++ + + F TPR+V+ + +L D+ Sbjct: 273 LQGYSLLNTNID--IKGKAYEEIVG---ANLRGDRGQFFTPRNVMKMVVEMLDPTDEER- 326 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPIL-------------- 240 + D +CGTGGF+ AM HV A+ Sbjct: 327 ---------VADTSCGTGGFIVMAMTHVMQRIEAELVDEFGPREDWGVDETMAFQERVSD 377 Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------ 290 G +++ + M++ D S NI Q ++L Sbjct: 378 VASRNFFGFDIDRDLAKATKMNMVMNN-------DGSGNIMQTNSLLPPHEWDMDFKSRL 430 Query: 291 ------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKN-------------G 319 F ++NPPFG K ++ + + Sbjct: 431 AKAIGRDPKSLVNWKSLAMFDVIVTNPPFGTKIPIKDTSILGQFELAHIWECDKTTGKWT 490 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 R +P +LF+ L GGR IVL S L G IR Sbjct: 491 MTDRLQSSVPP----EILFVERCTQFL----VEGGRMGIVLPDSIL----GSPGLGYIRE 538 Query: 380 WLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGK 421 WL+ N I A + + D F + T + IL + E+ + Sbjct: 539 WLIANHRIVASLDMHQDTFQPHNGVQTSVLILQKKSQAEKDAE 581 >gi|297190750|ref|ZP_06908148.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150608|gb|EFH30686.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 742 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 41/257 (15%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 + ++TP + L LL S + DP CG+G L A H A Sbjct: 175 SGTYLTPEPLSDLMARLL---------PSSPPPSVVLDPACGSGSLLAAAARHGAK---- 221 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +GQ+ P + + D ++ G +L D F Sbjct: 222 -------GLYGQDSVPVQARRAAVRLRL-----DQAGAGEVGVRIGDSLRADAFPDLTAD 269 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 LSNPP+G + + + R+ GLP ++ + ++ H L G Sbjct: 270 AVLSNPPYGVRDWGHE-------ELAYDARWAFGLPARAESELAWVQHALAHLPP----G 318 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G A ++L + A +R L+ + + A+ ALP +I ++W+L Sbjct: 319 GHAVLLLPPAT----AARPSGRRVRGELIRSGALRAVAALPAGAAAPLHIGLHIWVLQRP 374 Query: 414 KT-EERRGKVQLINATD 429 + R V ++ Sbjct: 375 QQGAVDRTSVLFVDTAS 391 >gi|125973660|ref|YP_001037570.1| N-6 DNA methylase [Clostridium thermocellum ATCC 27405] gi|125713885|gb|ABN52377.1| N-6 DNA methylase [Clostridium thermocellum ATCC 27405] Length = 628 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 77/486 (15%), Positives = 151/486 (31%), Gaps = 116/486 (23%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL---ESYIA 105 E R EK+ I E+F ++ ++ + + N+ + YI Sbjct: 176 EIYRYEYVEKHKDKAVQEIR-EAFKEIKDHA-------DYVAILDNGEKANIFSADEYIK 227 Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR- 164 + N + + + L+ L I + + V+ +++ L+R Sbjct: 228 LENPNI--------YIAVLKALQD---LGTIIIDGVERPATLRDLTGDVLGRVFDVLLRG 276 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLL-----DPDDALFKESPG---MIRTLYDPTCGT 216 +F E G ++TPR V A ++L D L + P + D CG+ Sbjct: 277 KF--ENKGGMGIYLTPRQVTEAAAEMVLHDLTKDGAAKLIAKDPKTGIPTLRIGDLCCGS 334 Query: 217 GGFLTDAMNHVADCGSHH------------KIPPILVPHGQELEPETHAVCVAGMLIRRL 264 GGFL + + + + G + P M + Sbjct: 335 GGFLIKMLQKIEHYLLNKLTGDKKQYEELFEQMKEHCFIGADNAPGMVLKARINMALHGA 394 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-------------------- 304 P ++L F L+NPPF K Sbjct: 395 PKCPIFQTR------NSLMNTRLKPGTFDAILTNPPFSKTGISKTIKKGKTTVENPEGAE 448 Query: 305 -WEKDKDAVEKEHKN-----------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + ++++ +N R D ++LF+ L+ Sbjct: 449 IIKYYSSDIDEDGQNRMSPYGLSLGSKPDSRGKWKEVNSVDPAVLFIDRNLQLLKP---- 504 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL------------IEAIVALPTDLFF- 399 GG IV+ L N SG+ +R +++ ++A+++LP F Sbjct: 505 GGLLMIVVPDGILSN----SGDKYVREYIMGKKNPVTGEFEGGKAILKAVISLPQVTFAL 560 Query: 400 -RTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIR-----NEGKKRRIINDDQRRQI 452 T L L ++ E++G V + A ++ +++ G + +I Sbjct: 561 SGAGAKTSLLYLKKKEHPGEKQGPVFMAVADEVGFTVKQNVEVQLGDDHNDLL-----KI 615 Query: 453 LDIYVS 458 ++ Y Sbjct: 616 VEAYKK 621 >gi|298241943|ref|ZP_06965750.1| restriction modification system DNA specificity domain protein [Ktedonobacter racemifer DSM 44963] gi|297554997|gb|EFH88861.1| restriction modification system DNA specificity domain protein [Ktedonobacter racemifer DSM 44963] Length = 790 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 91/548 (16%), Positives = 170/548 (31%), Gaps = 81/548 (14%) Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASF-SDNAKAIF 115 + + + E ++ G + S L + + N+ Y +F + + K I Sbjct: 177 ELNRVLIAKLQDERVIQTGG-----PRRFRASNLSNHQIKANIAQLYKEAFINLDGKPIE 231 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E F S L I K L P V D + +++ + F G Sbjct: 232 EKPWFFS-------PHALSNIVKILEPYALLP--VTDSIRGHLFWQMFAEFMRMNETG-- 280 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----- 230 F TP + L + + DP CGTG L A+ + Sbjct: 281 -FTTPVPLADFLVRL----------TQLREGQRIIDPACGTGLLLIVALEIIKAQVATNH 329 Query: 231 -----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + P V G E+E E + +++ + P ++ N L Sbjct: 330 LSSQDNPSLQKKPQYVIAGIEIEAEVAELAATNLVLNGI--SPSAVINANALDKHNLRYS 387 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + L +PP G + + + E G R MLF+ + Sbjct: 388 GVQLSTYDTVLLHPPMGLAPKNENILSQYEI-IGNNKRPTL--------EMLFIELAIDL 438 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTN 402 L GG ++ S L + S R WLL+ L AI++LP + + Sbjct: 439 LRP----GGLLVSLVPDSFLSSPSYQSA----RSWLLQRTLPRAIISLPPETLMPIGHSG 490 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 T L + + + +V + + + + + ++ D + Y R + Sbjct: 491 KTTVLLLEKKNIQQNHQDRVLIADVQSVGYNRFGQPTGENVLPDLLES--FETYCKRGDI 548 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS------FWL 516 + S F +I+V + L L + D T L + Sbjct: 549 ENS-------FSNEKIRVWT--TSTNDLSSKRLDIGQFDPTSTDLVYTLKHGQYPFVKLN 599 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS---FIVAFINAFGRKDPRADP 573 +I+ + + + Y + I++ + L + + + F NA D Sbjct: 600 EIVNIIGGRNFKYVEYAANTAIVIQAGAVRDLTLDLLNAPSISVKDFDNAKNAHVEFGDI 659 Query: 574 VTDVNGEW 581 + G + Sbjct: 660 LVTTTGAY 667 >gi|269126149|ref|YP_003299519.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183] gi|268311107|gb|ACY97481.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183] Length = 691 Score = 88.1 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 94/284 (33%), Gaps = 48/284 (16%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 ++E L R+ + P VV L + L + + T+ DP CG+G Sbjct: 167 VFEFLRERY--LSRHRRRVYEAPPQVVTLVSEL-----------ADSRVHTVLDPACGSG 213 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 FL + + P GQE + + + +R I+ Sbjct: 214 AFLLGMLE---------RPDPPRRLLGQEADEAVARLTAVRLALR--------TPGARIR 256 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G L D F ++ PPF + + + R+ G P S + Sbjct: 257 LGDGLRADRFPDAAADLVVTCPPFNDRNWGHE-------ELATDPRWRYGPPPRSCSELA 309 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 + H + GG +++ L IR LL + AI+ALP Sbjct: 310 WAQHALARCRP----GGLVVLLM----LPAAALRRAGRRIRAELLRRGALRAIIALPPQ- 360 Query: 398 FFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKK 440 +A ++W+L R + G+V +++ + + K Sbjct: 361 -AVPGMACHVWVLRRPRPGDRPPGQVLMVDVSGIGDDFAAPAAK 403 >gi|256374368|ref|YP_003098028.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827] gi|255918671|gb|ACU34182.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827] Length = 712 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 85/263 (32%), Gaps = 53/263 (20%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 A TP + L+ P T++DP CG G L H+A Sbjct: 203 GRDAG-HRTP-PLARCLVELV----------DPRPGETVHDPCCGDGRLLVAVAGHLAPE 250 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 G+ + + VC A + IR + +D R D F + Sbjct: 251 SPGAGA-----LSGRAADEVSSRVCAALLGIRGMSADLRAHG------------DGFRCE 293 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F +++PP + E G + ++ H +L Sbjct: 294 LFDVVVAHPPVTLAPPGGEGPPLGEPSARGAG-------------LAWVQHALRELAP-- 338 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGRAA+++ S + +RR L+E ++E +VALP + +W+L Sbjct: 339 --GGRAALLVPGST--ASGQAGRDVAVRRALVEAGVVECVVALP-----GRSSRAVVWVL 389 Query: 411 SNRKTEERRGKVQLINATDLWTS 433 +V ++A Sbjct: 390 RAPGAGPVDPEVLFVDAAGGGEP 412 >gi|182419440|ref|ZP_02950692.1| N-6 DNA methylase [Clostridium butyricum 5521] gi|237666688|ref|ZP_04526673.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376771|gb|EDT74343.1| N-6 DNA methylase [Clostridium butyricum 5521] gi|237657887|gb|EEP55442.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 642 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 62/391 (15%), Positives = 123/391 (31%), Gaps = 57/391 (14%) Query: 81 YNTSEYSLSTLGS--TNTRNNLESYIASFSDNAK--AIFEDFDFSST-IARLEKAGLLYK 135 Y S +S+ + L + + + K + + + + +L + + Sbjct: 195 YFNSLWSMMDEKQIRAAIESTLTNLLDGSENKTKKVELLQKNVLNDQKVKKLNTSNWIKI 254 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + I + D + I TP + L Sbjct: 255 LDTILMDIYKYIDADSSEGQDILNLFFIAFNKYTGKADKNQAFTPDHITDFMCRLTEVD- 313 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAM----------NHVADCGSHHKIPPILVPHGQ 245 + + D TCG+G FL AM + KI +G Sbjct: 314 ---------RTKVVLDATCGSGSFLVQAMVKELADCRRGKTEDETKKLQKIVKEEHIYGI 364 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKK 304 E+E + + + MLI D + NI+ S +D L NPP+ K Sbjct: 365 EVEEKAYGLATTNMLIHG-------DGNSNIKFKSCFDCEDFIKQANPDVILMNPPYNAK 417 Query: 305 W----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG------G 354 +K K + K+G+ P + FL + K+ Sbjct: 418 PIGIPKKYKTNWTAKAKDGKED------PTKGLVFIHFLSDVIQKMNEEREQNNQPKKTV 471 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413 + A++L S S ++ + +LEN+ +EA+ LP ++F+ + + + Sbjct: 472 KLAVLLPVSAAI--GTSSIITDEKIAMLENNTLEAVFTLPNEIFYPGASACACCMLFTLG 529 Query: 414 KT---EERRGKVQLIN--ATDLWTSIRNEGK 439 + + + ++ D + +N G+ Sbjct: 530 QPHIKADGQSRITFFGYCKEDGFKKKKNLGR 560 >gi|322691181|ref|YP_004220751.1| hypothetical protein BLLJ_0992 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456037|dbj|BAJ66659.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 600 Score = 87.3 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 135/456 (29%), Gaps = 87/456 (19%) Query: 93 STNTRNNL-ESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICK---NFSGIELHP 147 T + L +S IAS NAK I + + + + S Sbjct: 192 HTAIHSTLAKSLIASRKQNAKIDILLEEYSDIKMNTTDNQKAINDFIDWVVEISECVNSN 251 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + VM + R + + TP + +L D Sbjct: 252 EWRGEDVMGIFFNEFNRY---KKKSESGQIFTPEHITDFIYKILEVNMDD---------- 298 Query: 208 TLYDPTCGTGGFLTDAM-NHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + D TCG+GGFL AM N + + G +G E + E +A+ A MLI Sbjct: 299 CVLDATCGSGGFLVKAMANMIREAGGMETKKAGEIKSKQLYGIEFDREIYALACANMLIH 358 Query: 263 RLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +D N++Q T + + K L NPP+ E+K G Sbjct: 359 -------KDGKTNLEQMDTRTDAANEWMQSKPITKVLMNPPY-------------ENKYG 398 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 M + + + A +L L + Sbjct: 399 C-------------------MTIVENVMDSVPAHTQCAFILPDKKLEKASKAQM-----K 434 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +L+N + ++ LP DLFF + T +++ ++ + + Sbjct: 435 RILKNHRLRKVIKLPEDLFFGVGVTTSIFVFEAGVGQDGKE---FFACYMESDGLATVKN 491 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK---VLRPLRMSFILDKTGLA 496 K R D+Y + + +D V +S+ + + Sbjct: 492 KGRH----------DVYGKWAAIE-AHWVDVVEKQSGDDTCQWVNPAEHLSYQMPQKPFE 540 Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 E D + L +D + + + ++ Sbjct: 541 IFEEDFRKTAMDYLMFRQGIDAKEFGEKLLDTAMYS 576 >gi|310828498|ref|YP_003960855.1| hypothetical protein ELI_2923 [Eubacterium limosum KIST612] gi|308740232|gb|ADO37892.1| hypothetical protein ELI_2923 [Eubacterium limosum KIST612] Length = 600 Score = 87.3 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 77/457 (16%), Positives = 136/457 (29%), Gaps = 89/457 (19%) Query: 93 STNTRNNL-ESYIASFSDNAK-AIF----EDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 T + L +S I S NAK I D ++T + + + + S Sbjct: 192 HTAIHSTLSKSLIDSRKQNAKIDILLEEYSDIKMNTTDNQQAINDFIDWVVE-ISECVNS 250 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + VM + R + A TP + +L + Sbjct: 251 NEWRGEDVMGIFFNEFNRY---KKKSEAGQVFTPEHITDFMYKILEVNMND--------- 298 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-----ILVPHGQELEPETHAVCVAGMLI 261 + D TCG+GGFL AM ++ K +G E + E +A+ A MLI Sbjct: 299 -CILDATCGSGGFLVKAMANMIRESGGMKTKKASEIKSKQLYGIEFDREIYALACANMLI 357 Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +D N++Q ++ + K L NPP+ E+K Sbjct: 358 H-------KDGKTNLEQMDARTEAACEWMQSKPITKVLMNPPY-------------ENKY 397 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 G M + + + A +L L Sbjct: 398 GC-------------------MTIVENVLDSVPTHTQCAFILPDKKLEKASKAQM----- 433 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 + +L+N + ++ LP DLFF I T +++ + + + + Sbjct: 434 KRILKNHRLRKVIKLPEDLFFGVGITTSIFVFESGVGQGGKE---FFACYMESDGLATVK 490 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK---VLRPLRMSFILDKTGL 495 K R DIY + + S +D V +S+ + + Sbjct: 491 NKGRH----------DIYGKWASIE-SHWIDVVVKQSGDDTCQWVDPSEHLSYQMPQKPF 539 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532 E D L L +D + ++ Sbjct: 540 EIFEEDFKKTALDYLMFQKGVDAKAFSEKLTDTAMYS 576 >gi|257790143|ref|YP_003180749.1| N-6 DNA methylase [Eggerthella lenta DSM 2243] gi|257474040|gb|ACV54360.1| N-6 DNA methylase [Eggerthella lenta DSM 2243] Length = 764 Score = 87.3 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 71/431 (16%), Positives = 129/431 (29%), Gaps = 46/431 (10%) Query: 41 LRRLECALEPTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 L+R +EP V E + S++ E A + + L Sbjct: 355 LKRF---VEPAPHEVLEALVQDVRSDLAHVEGVAASAFDAAWEVLPLLFVRLVDDGAAWA 411 Query: 100 LESYIASFSDNAKAIFEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 E F ++ L L S + R+ Sbjct: 412 RVIAAEDTPAQIDVELERFAAQDEGLSFLSGFALSASSLDESSQRRMIDRIGDLRLDGYN 471 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 E L R+ + +E D P V L + L YDP G G Sbjct: 472 GELL--RWLALGNEPEPDAPCPAAVSDLMARIALA--------FNPSAAQAYDPCLGVGD 521 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L + + V L + A C E D + + Sbjct: 522 TLAA----LRRFAPTIRCGGQTVRFPDALVAKLAARC---------EGWFFDDGA--LAV 566 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 GS L +D GK +S P ++ + R+ G+P + ++ + Sbjct: 567 GSALVEDELAGKLADVIVSVLP------PNQGEWTDHAPDPSDTRWAFGVPPRNKANLAW 620 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + GG A + S++ L + E +R L+E+ + A+V+LP LF Sbjct: 621 VQQAFAHRAP----GGIAVLAASNAVLH--ESRGCEPGVRAALIESGCVRAVVSLPGGLF 674 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + + +L ++++ + +NA + N + R + D R +++ Sbjct: 675 SDGRVPFSIIVLGDKRSVPF--ETLFVNALEYGVP--NVTRAGRGLPMDARDRVVSTVER 730 Query: 459 RENGKFSRMLD 469 S + Sbjct: 731 WIATGSSVFIP 741 >gi|256545587|ref|ZP_05472947.1| type I restriction-modification system, M subunit [Anaerococcus vaginalis ATCC 51170] gi|256398798|gb|EEU12415.1| type I restriction-modification system, M subunit [Anaerococcus vaginalis ATCC 51170] Length = 674 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 126/416 (30%), Gaps = 101/416 (24%) Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIAR 126 + FY TSE + G +N +E K IFE D R Sbjct: 207 EDERDIPKPLEFYATSEERSNGDGQLTIKNRIEKIFERVKKEKKNAKIFEPNDSIKLHPR 266 Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L I L + + YE ++ + + +F TPR+V+ + Sbjct: 267 -----TLSYIVSELQKYSLLNTRID--IKGKAYEEIVGAY---LRGDRGEFFTPRNVMQM 316 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM---------NHVADCGSHHKIP 237 ++ +P + + D +CGTGGF+ AM D G + Sbjct: 317 VVEMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLRSEFTKDIGKDKENW 366 Query: 238 PIL---------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 G ++ P+ M++ D S NI Q ++L Sbjct: 367 NDYEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVMNN-------DGSGNILQTNSL 419 Query: 283 SKDLFTGKR------------------------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318 F ++NPPFG K A+ + + Sbjct: 420 LPPHEWTDDFKTRLASALQIDKKSIINHYDIGFFDVIVTNPPFGSKIPIKDHAILSQFEL 479 Query: 319 GELGRFGPGLPKISDGSM------------LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 R K +M LF+ L+ GGR IVL + L Sbjct: 480 ---ARIWNQDKKTGKWTMTDRYQSSVSPEILFIERCYQFLKP----GGRMGIVLPDALL- 531 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRGK 421 G IR WL++N I A + L D F T + IL + EE + Sbjct: 532 ---GSPGTGYIREWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEEISKE 584 >gi|227485430|ref|ZP_03915746.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172] gi|227236560|gb|EEI86575.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172] Length = 642 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 63/387 (16%), Positives = 125/387 (32%), Gaps = 44/387 (11%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 +++ G ID ++ ++ Y YN + ++ T LE+ + + AK Sbjct: 177 YIKDVVKQRGFITIDDKAVEELRDYWSYNKPSGIIGSIKET-----LENLLDGSDNKAKK 231 Query: 114 I--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 I + ++ + L+ + + I + D D + I Sbjct: 232 IELLQKNVLNNQKVKALDIKDWVGILSYILENIYAYIDEDSDEGQDILNLFFIAFNKYTG 291 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------ 224 + TP + + + ++D CG+G FL AM Sbjct: 292 KDDKNQAFTPDHITEFMCRITEVD----------RYKRVFDGACGSGSFLVQAMVKELAD 341 Query: 225 ---NHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + D + +G E+E + MLI D + NI+ Sbjct: 342 CDKARITDAEKQILKENIKKNNIYGVEIEETAFGLSTTNMLIHG-------DGNSNIKLA 394 Query: 280 STL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 S S++ F L NPP+ K + K G P F Sbjct: 395 SLFDSEEFFIEANPDIVLMNPPYNAKPRTIPGKYKIGWK--PNQINGKEDPSKGFSFAEF 452 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI----RRWLLENDLIEAIVALP 394 + K+ + G+A + + L A G + I + +LE++ +EA+ LP Sbjct: 453 ISDCVKKININRVNDGKAKKEVKLAILLPVSAAIGSNNILKSAKEKMLEDNTLEAVFTLP 512 Query: 395 TDLFF-RTNIATYLWILSNRKTEERRG 420 ++F+ +++ + + + Sbjct: 513 NEVFYPGASVSACCMVFTLGRPHISAD 539 >gi|332367332|gb|EGJ45067.1| type I restriction-modification system methyltransferase subunit [Streptococcus sanguinis SK1059] Length = 693 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 86/534 (16%), Positives = 170/534 (31%), Gaps = 78/534 (14%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L + L E ++ ++V + + ++ L Sbjct: 196 LFLFKYLSDIGVLNGENSFEYIVSLYEKEGYSTAYVLGK---YLEGARETMVKLFPKGMD 252 Query: 98 NNLESYIASFSDNA-KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 S I + + +F + K+ +L + + + S Sbjct: 253 G--TSIINGKVFHIERDEQNEFVSVDNTDTVFKSVILE--FEKYDKKYGKFLNISKDFKS 308 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++E ++ S+ F TP +V +++ T+ DP CG Sbjct: 309 KLFETFMK--NSDDKSDMGQFFTPLKIVDEMVSMVDI----------SEGMTICDPACGV 356 Query: 217 GGFLTDA-MNHVADCGSHHKIPP--ILVPHGQEL-----EPETHAVCVAGMLIRRLESDP 268 G FL +A + D S+ K + G + + T + A LI E Sbjct: 357 GKFLLEAVEKRIEDSYSYSKGKLTSKIRFFGYDKMMSEKDDITIILAKANTLIYFSELFQ 416 Query: 269 RRDLSKNIQQ-GSTLSKDLF-------------TGKRFHYCLSNPPFGKKWE-KDKDAVE 313 + + K++Q TL D F R+ L+NPP+ + E + Sbjct: 417 QNNSFKDVQAIAKTLLNDSFYLHKSMLGTLENLEENRYDLILANPPYYQSKEMSELAKAT 476 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 +K G G LFL + ++ GG A IVL N Sbjct: 477 DIYKYGGSGVEA-----------LFLEWIMRSVKH----GGVANIVLPDGIFSNHANKKL 521 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 + +++ I+A+++LP + FF T TY+ + + E + + ++T Sbjct: 522 KEKLKELF----FIDALISLPVNAFFNTPKKTYILTIRKKTENEIENNI--VQDYPVFT- 574 Query: 434 IRNEGKKRRIINDDQRRQILDIYV-SRENGK--FSRMLDYRTFGYRRIKVLRPLRMSFIL 490 + LD+Y E + + ++ L+ SF+L Sbjct: 575 ----------YIAGSIGETLDVYRFDSEENDLKQAVIKYNYYRQFQDKNNLQEPIKSFLL 624 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544 D + L L + K S + +++W + K + +++ + Sbjct: 625 DDSRLKLLSIEELDSKKSWIIENWWSEEEKIAIGLKKEKQVVSIDEFQAMIDDM 678 >gi|326441402|ref|ZP_08216136.1| type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] Length = 730 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + G +L D F G L++PPF ++ + + R+ GLP ++ + Sbjct: 260 RSGDSLRADAFPGAEADAVLTHPPFNERHWGHE-------ELAYDPRWEYGLPARTESEL 312 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 ++ H +L GG A +++ + SG +R LL + A+VALP Sbjct: 313 AWVQHALARLRP----GGTAVVLMPPAAASR---RSG-RRVRAGLLRRGALRAVVALPAG 364 Query: 397 LFFRTNIATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 I +LW+L + V ++ +L S + G+ R R +LD Sbjct: 365 AAPPYGIPLHLWVLRRPEPGRTPAPDVLFVDTAEL--SGASGGRDRLDWT-AVRNAVLDA 421 Query: 456 YVSRE 460 + Sbjct: 422 WRPFA 426 >gi|294813056|ref|ZP_06771699.1| Putative type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] gi|294325655|gb|EFG07298.1| Putative type II restriction-modification system DNA adenine-specific methylase [Streptomyces clavuligerus ATCC 27064] Length = 795 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + G +L D F G L++PPF ++ + + R+ GLP ++ + Sbjct: 325 RSGDSLRADAFPGAEADAVLTHPPFNERHWGHE-------ELAYDPRWEYGLPARTESEL 377 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 ++ H +L GG A +++ + SG +R LL + A+VALP Sbjct: 378 AWVQHALARLRP----GGTAVVLMPPAAASR---RSG-RRVRAGLLRRGALRAVVALPAG 429 Query: 397 LFFRTNIATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 I +LW+L + V ++ +L S + G+ R R +LD Sbjct: 430 AAPPYGIPLHLWVLRRPEPGRTPAPDVLFVDTAEL--SGASGGRDRLDWT-AVRNAVLDA 486 Query: 456 YVSRE 460 + Sbjct: 487 WRPFA 491 >gi|121534426|ref|ZP_01666249.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1] gi|121306919|gb|EAX47838.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1] Length = 664 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 92/278 (33%), Gaps = 47/278 (16%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ IYE + + TP ++ + ++ Sbjct: 91 RNKEFLLGEIYER-----TAMGRRAQGRYYTPAKIIDFIMSWTVEECAVTLN----PYVR 141 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEP 249 + DP CG G FL A + + H+ G +++ Sbjct: 142 VLDPACGCGNFLVKAYDVLRQKFWDARPILQTRYPEIDWSDDGIHRHIIRYNLWGADIDG 201 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---------LFTGKRFHYCLSNPP 300 + +L++ + RDL NI+Q +L + F + Y + NPP Sbjct: 202 TAAKIAALSLLLK--RPEASRDLIPNIRQCDSLRRPDENSGSSDKTFWAAAYDYVVGNPP 259 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + + A++ + F LF+ L+ GGR ++ Sbjct: 260 YLSFGLRGGQALDPGYGKYLRQAFVACAEYKISYYALFMQRGIELLKP----GGRLGFIV 315 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 S L G S++RR+LL+ ++AIV + +F Sbjct: 316 PDSFL----LGRYFSKLRRYLLDYTAVKAIVHIAAPVF 349 >gi|315639332|ref|ZP_07894494.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] gi|315480658|gb|EFU71300.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] Length = 463 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 69/408 (16%), Positives = 126/408 (30%), Gaps = 76/408 (18%) Query: 204 GMIRTLYDPTCGTGGFLTDAMN--------HVADCGSHHKIPPILVPHGQELEPETHAVC 255 + DPTCG+G FLT+AM + + K G E + Sbjct: 8 SKDSEILDPTCGSGTFLTNAMANMFNEIDPKLENLHETQKNIKQNRLIGIETNEFNATLA 67 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ D + I + ++ L NPPF + Sbjct: 68 GINMMLHG-------DGASQIYNADCFERLPSLQNMYNRVLMNPPFAQ------------ 108 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 SD + F+ + G A IV S E+ Sbjct: 109 ----------------SDIELKFVYETLYYMRDD---GFLATIVPKSCVSGT-----IEA 144 Query: 376 EIR--RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWT 432 +R + + ++A+++LPT+LF+ T + +L KT + K LIN D + Sbjct: 145 NVRYLSKIFKIANLKAVISLPTNLFYPVGANTCIIVL--HKTNIKDNKTILINCLNDGFE 202 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI--- 489 + + D + +IL Y+ F R + L+ + Sbjct: 203 VVNKARICKNDEWDIIKNEILKAYLK------------NDFTKNRAIIKTDLQANDELLF 250 Query: 490 --LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI-YPYGWAESFVKESIKSNEAK 546 A ++ ++ R + + + L + + W +F SI K Sbjct: 251 EAYSSHRNAMIQEEVYTRYIREVVSAKVLCGFELHKNTLKKNAIWDTAFEDFSISDLIIK 310 Query: 547 TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE-YENV 593 K + KS N + ++ + + + L + E V Sbjct: 311 IGKGREKKSIDRKIENKYP-QNGIPLIIAKKDNNGVGGAKLRDEIEQV 357 >gi|71897760|ref|ZP_00679986.1| Helix-turn-helix motif:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] gi|71732315|gb|EAO34369.1| Helix-turn-helix motif:Type I restriction-modification system, M subunit [Xylella fastidiosa Ann-1] Length = 404 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 36/210 (17%) Query: 36 LPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL---- 91 L L+RL + + + E+Y + ES + FY + + + Sbjct: 198 LTLLFLKRLSDVFDDEITRLAEEYGDCATALEIAES--DHSLLRFYLPPQARWAVISGRK 255 Query: 92 -------------GSTNTRNNLES---YIASFSDNAKAIFEDFDF--SSTIARLEKAGLL 133 + +L + + + + DF R L Sbjct: 256 SFNWPLDEDDRPTAPRDIGEHLTKDSRAVVKQNPTLSGVIDIVDFAVERNSERDINPAKL 315 Query: 134 YKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 + + FS V + Y +L+R+F + A +F TP L +L Sbjct: 316 RGVVETFSDPRYRLGLAHVQPDFLGRAYAYLLRKFTEGSGQSAGEFFTPTKAGFLMAHIL 375 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 P +D C +GG L Sbjct: 376 ----------RPKSGDACHDYACDSGGLLI 395 >gi|298375963|ref|ZP_06985919.1| N-6 DNA methylase [Bacteroides sp. 3_1_19] gi|298267000|gb|EFI08657.1| N-6 DNA methylase [Bacteroides sp. 3_1_19] Length = 837 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 69/430 (16%), Positives = 107/430 (24%), Gaps = 120/430 (27%) Query: 59 YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 Y + + +YN + L + + + F Sbjct: 186 YERDAKEELVYSKDKFIKDELYYNGEVDYIQHLFNEVKKAYSTDGL-------------F 232 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 D I ++ LL I + S +EL+ D + +E + + F Sbjct: 233 DSEDKIRIRRESFLL--ILEELSSVELY--DTSDDIKGIAFELFLGK---TFRGELGQFF 285 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR +V+ +L + + DP CG+GGFL A HV + Sbjct: 286 TPRTIVNYMVEVLNVKEGD----------KVCDPCCGSGGFLIKAFEHVQNQIDQDIHKQ 335 Query: 239 ---------------------------------------ILVPHGQELEPETHAVCVAGM 259 G + M Sbjct: 336 ITILMDNQSLSDTEKQYKINTLLRECDKTKEGSRYHKLCHDYFFGVDANARMARTSKMNM 395 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----- 314 ++ I G F L NPPFG EKD Sbjct: 396 IMHGDGHVGVYLHDGLINVG------GVYDNNFDVILINPPFGAHVEKDMRITSSDIPTD 449 Query: 315 ------EHKNGELGRFGPGLPKISDGS------------------------MLFLMHLAN 344 E G P +LF+ N Sbjct: 450 RERALCEELFGSEYISKVYTPIKEYAQEIGKDKKIGKRILELYQINNNSTEILFIERCIN 509 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN-- 402 L+ G RA IVL L N +R+++ I I ++P D+F + Sbjct: 510 LLKP----GKRAGIVLPEGVLDNPALD----RVRKFIESRAKILNITSIPADVFLSSGAN 561 Query: 403 IATYLWILSN 412 I L + Sbjct: 562 IKPSLVFIEK 571 >gi|332686988|ref|YP_004456762.1| type I restriction-modification system, DNA-methyltransferase subunit M [Melissococcus plutonius ATCC 35311] gi|332370997|dbj|BAK21953.1| type I restriction-modification system, DNA-methyltransferase subunit M [Melissococcus plutonius ATCC 35311] Length = 139 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 26/151 (17%) Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289 + ++ GQE + + + +++ +E + NI +L D G Sbjct: 1 MKNSSKRGMVKYFGQEKDATPYRLVRMNLMMHGIEYNDI-----NINHADSLESDWPDGV 55 Query: 290 -------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMH 341 + F ++NPP+ W + + R+ G+ + FL+H Sbjct: 56 VDGKDNPRMFSAVMANPPYSAHW--------NNKEREDDPRWREYGIAPKTKADYAFLLH 107 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 LE GR AI+L LF G Sbjct: 108 CLYHLEDR----GRMAIILPHGVLFRGAVKK 134 >gi|261884854|ref|ZP_06008893.1| type I restriction-modification system, M subunit [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 156 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 7/98 (7%) Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 +IR+ L++ +L++AI+ LP +LF+ T I + I +T V I+A+ + Sbjct: 1 GKIRQKLIDQNLLDAIIGLPANLFYGTGIPACIMIFKKNRT---NNDVLFIDASSEFYKD 57 Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 +N + +ND +I Y R + L Sbjct: 58 KN----QNRLNDALIAKIAXTYNDRISVDKYAYLATIE 91 >gi|329936983|ref|ZP_08286612.1| N-methyltransferase [Streptomyces griseoaurantiacus M045] gi|329303590|gb|EGG47475.1| N-methyltransferase [Streptomyces griseoaurantiacus M045] Length = 569 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 92/287 (32%), Gaps = 55/287 (19%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES---PGMIRTL------- 209 E ++RR + + +PR+VV L D + P ++R + Sbjct: 129 EEVVRRVRALAGDT-----SPREVVTGLVERLTDSVRRAGSDQITSPRVVRAVSHYAGEV 183 Query: 210 ------YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 +DP CG G L +GQE + + Sbjct: 184 ASDAALFDPACGIGTLLLAV-----------GPQRGPRRYGQENDAHSARFAR------- 225 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 L + I G +L +D + + +PP G + R Sbjct: 226 LRAQLTGRGGVEIVTGDSLREDRLPELKADLVVCDPPVGISDWG-------REELLLDSR 278 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + G P ++G + +L H GGR +V+S+S + IR L+ Sbjct: 279 WELGTPSRAEGELAWLQHAYAHTAP----GGRVLMVMSASVAYRKAGR----RIRAELVR 330 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATD 429 ++ + ALP + +LW L + V++++ T Sbjct: 331 RGVLTQVTALPPGTAVSHALPVHLWHLRRPLSPGDAVTSVRMVDLTS 377 >gi|14520377|ref|NP_125852.1| site specific DNA-methyltransferase [Pyrococcus abyssi GE5] gi|5457592|emb|CAB49083.1| Site specific DNA-methyltransferase [Pyrococcus abyssi GE5] Length = 464 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 50/256 (19%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP V + + DP CG G FL ++ + G Sbjct: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTN------LACDPACGNGVFL----KYLKEKG 63 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +G +++P ++ +++ +I L G+ Sbjct: 64 FK--------IYGFDIDPT-------------VKDRAPKEIKDSIIITDGLLDLPHEGE- 101 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPP 350 + + NPPF K+ + D L +F G + S +LFL Sbjct: 102 YDVVVGNPPFSAKYGRITD-------KKILSKFELGRERKSQAIEILFLEKFFRC----A 150 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG ++L N +R ++L N I AIVALP ++F T T + Sbjct: 151 REGGIIGVILPFGIFSNTNL----KYVRDFILRNSQILAIVALPRNVFTGTTARTAILF- 205 Query: 411 SNRKTEERRGKVQLIN 426 +K +G+V + N Sbjct: 206 -AKKGGPHKGEVLMAN 220 >gi|86741365|ref|YP_481765.1| N-6 DNA methylase [Frankia sp. CcI3] gi|86568227|gb|ABD12036.1| N-6 DNA methylase [Frankia sp. CcI3] Length = 746 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 85/262 (32%), Gaps = 44/262 (16%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +++ L R+ S + PR V L L T+ Sbjct: 182 DRHGHAELFDALRARYREVCSRQVAE--PPRAVGELMVTLAGL-------RGRSGAATVL 232 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 DP CG GG L A GQ++ P V G+L+R + Sbjct: 233 DPACGIGGLLEAAR-----------AAGAGRLLGQDVNPTMARVSAVGLLLRGGD----- 276 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I G +L F G+R L PPFG++ + + + G+P Sbjct: 277 ---ARIVAGDSLLAGTFAGERADAVLCAPPFGQRSWGYDELLGAPW-------WRHGVPP 326 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 + + ++ + G + +++ ++ + LL + A+ Sbjct: 327 RGEPELAWVQYCLAH----ARDGAQVLVIMPAAAASRRAGRRIRAN----LLRAGELRAV 378 Query: 391 VALPTDLFFRTNIATYLWILSN 412 + LP LF A LW+L Sbjct: 379 LGLPPGLF-PAGSAPDLWVLRR 399 >gi|312601569|gb|ADQ90824.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168] Length = 785 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 74/498 (14%), Positives = 155/498 (31%), Gaps = 107/498 (21%) Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 NL++Y+ + + IFE + I+ + ++ I + + N Sbjct: 211 QNLQNYLYNSTFKTVDIFELNNIVELISNV------------YNLINISHKNYKGHDIMN 258 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 + + R++ S ++ + TP + L L+ + DPTCG+G Sbjct: 259 AFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGSG 309 Query: 218 GFLTDAMNHV-------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 FLT+AM ++ K G EL + Sbjct: 310 TFLTNAMANMFQDVHSFFKSKKLSKEKEEQYSNQACKDIKNNKLIGIELNEFNATLAGIN 369 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ML+ D S NI Q + ++ L NPPF +K Sbjct: 370 MLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES------------ 410 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + F+ L+ G+ A ++ S L + E + Sbjct: 411 ----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLKK 450 Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 +++ + I++LP D+F + T + +L E+ + K+Q Sbjct: 451 IFMMAK--VSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIK-KIQ------------KL 495 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSR----MLDYRTFGYRRIKVLRPLRMSFILDKT 493 K++ I + + L + + F F + ++ + L+ F + Sbjct: 496 ASKKKEIEEHTQNIFL---IDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQA 552 Query: 494 --GLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPYG-WAESFVKESIKSNEAKTL 548 R + ++++ + + + + K M + K N +K Sbjct: 553 LKRNLRFDEELSFERFNTNRTFDIEESVFKKYMKENFASKVLSGIENQVILKKKNLSKYK 612 Query: 549 KVKASKSFIVAFINAFGR 566 +K + ++ + Sbjct: 613 NIKFKFFAVDKILDFISK 630 >gi|332669269|ref|YP_004452277.1| N-6 DNA methylase [Cellulomonas fimi ATCC 484] gi|332338307|gb|AEE44890.1| N-6 DNA methylase [Cellulomonas fimi ATCC 484] Length = 633 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 89/293 (30%), Gaps = 50/293 (17%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 ++ P V+ ++ ++ V F TPR +V A++ P Sbjct: 104 DVELSDAPAHVVGEAFQAVVG---PRVRGEKGQFFTPRSLVAAMVAIV----------DP 150 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + DP G+GGFL V G + + + + A + + Sbjct: 151 QPGEKVVDPAAGSGGFL------VEAHAHAAGRGGAATVVGGDKDFDLFRLQTALLAM-- 202 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG------KRFHYCLSNPPFGKKW---------EKD 308 + ++L D ++ + L+NPPFG + D Sbjct: 203 -----VAGDDAHPHHQNSLDLDAWSHVAAGGLGTYDVVLANPPFGARIGVEDQALLGRYD 257 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 V R + + D +LFL L GGR IVL G Sbjct: 258 LAHVWSRDPRTGGWRRTDTVDRSRDPQILFLELCVRLLRP----GGRMGIVLPEGVF--G 311 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420 AGS WL IEA++ P F T+ T + + Sbjct: 312 NAGSAYVW--EWLRTQGAIEALLDCPRTTFQPGTDTKTNVLFFRKDAPQGPTW 362 >gi|67922392|ref|ZP_00515903.1| similar to Type I restriction-modification system methyltransferase subunit [Crocosphaera watsonii WH 8501] gi|67855736|gb|EAM50984.1| similar to Type I restriction-modification system methyltransferase subunit [Crocosphaera watsonii WH 8501] Length = 349 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 136/390 (34%), Gaps = 76/390 (19%) Query: 96 TRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKAGLLYKICKN---FSGIELHPD--- 148 ++ES F A+ +F S I ++ + L + + S I D Sbjct: 6 ILKDIESAFRQFGYEAEDVFNAIAYIYSNIFSIKASEKLSGVLEKGKLISDIVFQDDCLK 65 Query: 149 ---------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 ++ Y++ + + + F TP + +L Sbjct: 66 KTINSYVKKDKDGENLTIFYQYFL---AKRFRDISGKFFTPHPIAMQMVKMLPV------ 116 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + DPTCG G FL V + + G +++ +C+ + Sbjct: 117 ----KANAVIIDPTCGGGTFL----KTVREQWKNI----PCHLIGNDVDQ--MLICLTEL 162 Query: 260 LIRRLESDPRRDL--SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 +++ ++ + NI Q ++ + F + Y L+NPPF + + + Sbjct: 163 VLKINKNHQENTSLLTSNIYQPNSQIQSFF--GQIDYILANPPFSLPV-DIFTSNSRLFE 219 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 +G + SD L + L+ GGR +L S + N E + Sbjct: 220 SGY---------RNSDA--LLIDLSFKLLKP----GGRLVCLLPHSIISN-----KEYQN 259 Query: 378 RRWLLENDL-IEAIVALPTDLFFRTNIATY---LWILSNRKTE--ERRGKVQLINATDLW 431 R ++E D + A++ LP +F T T + +L +K E +R K N + L Sbjct: 260 LREIVEKDWYLTAVIILPEGIFKSTASTTTRADIIVLDKKKNEQVDRNRKTIFANISSLD 319 Query: 432 TSIRNEGKK------RRIINDDQRRQILDI 455 + + K+ ++ + + +IL I Sbjct: 320 IPLNHRQKQVTTNDLENLLKNSKVSEILGI 349 >gi|237751945|ref|ZP_04582425.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430] gi|229376512|gb|EEO26603.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430] Length = 543 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 78/421 (18%), Positives = 149/421 (35%), Gaps = 80/421 (19%) Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + +R + + V + F+ + S L + + E + +F + Sbjct: 2 KELLRVFNYIQKYHEDNFDILYLVLEFLFFIKDKEQGSALL---MQKDKEKALENFKSHL 58 Query: 112 KAI-FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + I E F F S L +L + + F D ++E + + Sbjct: 59 QEIGLEYFGFHS---DLNYKKVLKSL-QGF-----------DIKAQTLWEFIQAITMQKT 103 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 ++ TP ++ L +L ++Y+P CG G +L H D Sbjct: 104 ILKLYEYATPAEINALVYGILDI----------KSGESVYNPCCGLGSWLLHLKLHTKD- 152 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 +G ++ P++ + A L+ LE K+I S+ T Sbjct: 153 ---------CAFYGADINPKSIRIAKALALL--LEFKTCSLSIKDI-----FSEPFKTES 196 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 +F +PP +E K + +P F+ + + Sbjct: 197 KFDKVFCHPPL---LSHLSLKAPRESKLAPYNKTALEIP--------FIDYSLMRFSK-- 243 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409 +A ++ +S L G GE ++LL+N L+E+++ LP ++F ++T + L I Sbjct: 244 ----KAVFIVRTSLLSKGA---GERLC-KYLLKNGLLESVIELPDNIFPYKTESYSILVI 295 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 + K INA D + K +ILD+Y S++N K+S ++ Sbjct: 296 SNTNKRC------LFINARDFYIKEGKYHKLIN------LEEILDLYFSKQNTKYSNFVE 343 Query: 470 Y 470 Y Sbjct: 344 Y 344 >gi|170718764|ref|YP_001783948.1| N-6 DNA methylase [Haemophilus somnus 2336] gi|168826893|gb|ACA32264.1| N-6 DNA methylase [Haemophilus somnus 2336] Length = 1110 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 105/343 (30%), Gaps = 44/343 (12%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDF---------DF---SSTIARL--EKAGLLYKICKN 139 + + K I + F DF +L + +L ++ + Sbjct: 332 EEIEAAFILFKNKKDETKKTILDKFTEIKYYTNNDFAFLDVHNKKLFFQNGAILKEVVQM 391 Query: 140 FSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 I L D ++ + +++E + + V + F TP +V + L D Sbjct: 392 LQDIRLKTDNGGENQFLGDLFEGFLDQ---GVKQSEGQFFTPLPIVRFLVSSLPLADLIS 448 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAV 254 ++P + D CG G FL + + + K + G E E V Sbjct: 449 GSDAPPK---MIDYACGAGHFLNEYASQIRPLVQAFKQADTAPYYQAIVGIEKEYRLSKV 505 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLF--TGKRFHYCLSNPPFGKKWEKDKD 310 + + I G L+ D F ++NPP+ + D Sbjct: 506 AKVSAFMYGQDGI-------QIVYGDGLTAHNDKVKVENGAFSVLVANPPYSV--KGFLD 556 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + + + F + G AAI+L SS L NG Sbjct: 557 TLSDDECKSFSLYKHVDKTDTFNSIETF---FIERTAQLLQQNGVAAIILPSSVLSNGNI 613 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 + R LL++ I AI + F +T T L + Sbjct: 614 ---YIKAREILLQHFDIVAIAEFGSGTFGKTGTNTVTLFLRRK 653 >gi|72080953|ref|YP_288011.1| hypothetical protein MHP7448_0626 [Mycoplasma hyopneumoniae 7448] gi|71914077|gb|AAZ53988.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 787 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 64/396 (16%), Positives = 125/396 (31%), Gaps = 101/396 (25%) Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 NL++Y+ + + IFE + I+ + ++ I + + N Sbjct: 213 QNLQNYLYNSTFKTVDIFELNNIVELISNV------------YNLINISHKNYKGHDIMN 260 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 + + R++ S ++ + TP + L L+ + DPTCG+G Sbjct: 261 AFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGSG 311 Query: 218 GFLTDA-------------------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 FLT+A K G EL + Sbjct: 312 TFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQACKDIKSNKLIGIELNEFNATLAGIN 371 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ML+ D S NI Q + ++ L NPPF +K Sbjct: 372 MLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES------------ 412 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + F+ L+ G+ A ++ S L + E + Sbjct: 413 ----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLKK 452 Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWIL----------------SNRKTEERRGK 421 +++ + I++LP D+F + T + +L ++ EE Sbjct: 453 IFMMAK--VSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIKKIQKLASKKKEIEEHTQN 510 Query: 422 VQLINATD---LWTSIRNEGKKRRIINDDQRRQILD 454 + LI+ +D ++ + R + + + ++IL Sbjct: 511 IFLIDFSDDGFVYANERRYKTDKFALKIKELQKILK 546 >gi|257785025|ref|YP_003180242.1| N-6 DNA methylase [Atopobium parvulum DSM 20469] gi|257473532|gb|ACV51651.1| N-6 DNA methylase [Atopobium parvulum DSM 20469] Length = 796 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 78/463 (16%), Positives = 134/463 (28%), Gaps = 130/463 (28%) Query: 38 FTLLR-RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 ++ R E T+ R++Y A N + + G Y S+ + L ST Sbjct: 201 LLFMKIRYERQQRGTKVFTRKQYEA-EEKNYEENIRPGLKGTVLY--SQSYMQRLFSTTK 257 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + ++ SD K + F + +LE L D V Sbjct: 258 EEFKDDHLFEDSDEIK--IRNNSFIQILGKLENFNL---------------SDTQDDVKG 300 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +E + + F TPR +V T ++ P + DPTCG+ Sbjct: 301 IAFEQFLG---TTFRGELGQFFTPRTIVDFMTEII----------DPQEGEIICDPTCGS 347 Query: 217 GGFLTDAMNHVADC---------------------------------------------- 230 GGFL A +V + Sbjct: 348 GGFLIKAFEYVREKIEADIREQKEKLRSEFESDDFESKPEDEQIRVTVLIDKMQAVLNAE 407 Query: 231 ------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 S + +G + P M++ L+ Sbjct: 408 LDTSATNSRMQQLSRNCIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDG------LLNV 461 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKD------AVEKEHKNGELGRFGP------------ 326 + +RF L+NPPFG+ ++ + ++E K ++G Sbjct: 462 NGIFEERFDVILTNPPFGQNVDRSQTITDADRFTDEEMKKKYRNKYGEAYDEALKQVDDH 521 Query: 327 -GLPKISDGSM---------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G P +S + LF+ L+ GGR +VL L N + Sbjct: 522 IGKPLLSLYDLGSTSTLTEVLFMERCLRLLKK----GGRMGMVLPEGVLNNKNL----AA 573 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEE 417 +R + + I ++P D+F + L + EE Sbjct: 574 VREYFEGKAKLILICSIPQDVFIAAGATVKPSLVFMRKFTAEE 616 >gi|303236690|ref|ZP_07323271.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN] gi|302483194|gb|EFL46208.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN] Length = 757 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 74/400 (18%), Positives = 108/400 (27%), Gaps = 122/400 (30%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 F DNAK + F + LE L T D V +E + + Sbjct: 260 FDDNAKIEIRENSFEQIVKELEIYNL---------------STTSDDVKGIAFEKFLGK- 303 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 F TPR VV ++L P + DP CG+GGFL + Sbjct: 304 --TFRGELGQFFTPRTVVDFMVSVL----------DPQEGELVCDPCCGSGGFLIKTFEY 351 Query: 227 VADCGSHHKIPPILV--------------------------------------------- 241 V + Sbjct: 352 VREKIEKEIEQQKETIKAKYYGDDYDKLPDKKKQKIEAEVAQTFSYLNEELNINNEKGRL 411 Query: 242 -------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 +G + P M++ L+ + RF Sbjct: 412 RSLSFDCIYGTDANPRMARTAKMNMIMHGDGHGGVHHHDG------LLNVNGIFENRFDI 465 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGEL------GRFGPGLPK------------------ 330 L+NPPFG + EKD E + + R+G K Sbjct: 466 ILTNPPFGARVEKDLKISEADRFTDKAKISSYVERYGEAYNKALRQVNDNINKSLLSLYK 525 Query: 331 --ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S +LF+ N L+ GGR IVL L N + R ++ I Sbjct: 526 IDSSLTEVLFIERCLNLLKP----GGRMGIVLPEGVLNNPNLQ----KARDFVEGKAKIL 577 Query: 389 AIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQLIN 426 IV++P D+F + + L EE Q+ N Sbjct: 578 LIVSIPQDVFIASGATVKPSLLFFKKFTEEEATTYSQIQN 617 >gi|313669543|ref|YP_004049968.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994] gi|313156740|gb|ADR35415.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994] Length = 597 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 74/404 (18%), Positives = 132/404 (32%), Gaps = 59/404 (14%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + L + + + P+ + +F P ++V L Sbjct: 86 SDSKTLNEYIQFVLDNLVFPNVSEAFNV----------LSERQGSKFGEFAQPEELVDLL 135 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + + ++Y P T G L + + + + Sbjct: 136 VKIADQDNPE----------SVYIPF--TSGTLLAGV---------LGKKANQKLYIENI 174 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG-KKW 305 T + ++ R L+ N T + T +F ++ PPFG K Sbjct: 175 YLNTVVLELS----RYLDHVSMDYAINNPIYEPTFVDLETRTLNQFDVSVAIPPFGGIKA 230 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 EK+ + + G +G + + H ++ GRA V+S L Sbjct: 231 EKEIANIRWDRYRVADTLNG----SSRNGEIALIEHTLSQ------TTGRAIFVISHGLL 280 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 F A IR LL N IEA++ LP +LF + I T + IL+N+ + + V I Sbjct: 281 FRSAADW---MIREQLLANKQIEAVITLPGNLFIHSVIPTAILILNNQCSYQ---DVLFI 334 Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485 +A+ + ++ GKK ++ D IL + RE+ + L L P R Sbjct: 335 DASKM---VKRVGKK-NVLTD--LETILQLLEKRESVEEVSALVSYKELNANQNSLNPSR 388 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 +D + + KLS L ++K Sbjct: 389 YIVSVDDQNIQNILEAHDTEKLSNLTVLQRSQLIKDEEADDGTE 432 >gi|322510790|gb|ADX06104.1| putative type I restriction modification N-6 adenine specific methyltransferase domain protein [Organic Lake phycodnavirus 1] Length = 184 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 23/196 (11%) Query: 227 VADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + H K+ + +G+ELEP+T+ + V+ MLI + D +I+ T Sbjct: 2 IQAKNKHIKLDWDFIMNEGLYGKELEPDTYQLAVSNMLISTGHMFEKLDRGDSIRVPIT- 60 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 ++F L+NPPFG K + + K + LF+ + Sbjct: 61 -------RKFDNILANPPFGINGLKYDEFESPLKRE-------YVPIKTDNAVSLFIQAI 106 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L+ G+ A+VL ++ + IR +LL+ ++ I+ LP+ +F T+ Sbjct: 107 IYMLK----INGKCAVVLPDGQDLFSKSNNRLVAIREYLLKTCDLKEIIYLPSGIFTYTS 162 Query: 403 IATYLWILSNRKTEER 418 I T ++ ++ +R Sbjct: 163 IKTCVFYFVKKERRKR 178 >gi|291515458|emb|CBK64668.1| Type I restriction-modification system methyltransferase subunit [Alistipes shahii WAL 8301] Length = 837 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 65/371 (17%), Positives = 98/371 (26%), Gaps = 107/371 (28%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 FD I ++ LL I + S +EL+ D + +E + + F Sbjct: 232 FDSEDKIRIRRESFLL--ILEELSSVELY--DTSDDIKGIAFELFLGK---TFRGELGQF 284 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TPR +V+ +L + + DP CG+GGFL A HV + Sbjct: 285 FTPRTIVNYMVEVLNVKEGD----------KVCDPCCGSGGFLIKAFEHVQNQIDQDIHK 334 Query: 238 P---------------------------------------ILVPHGQELEPETHAVCVAG 258 G + Sbjct: 335 QITLLMDNLNLSDTEKQYKINTLLSECDKTKEGSRYHKLCHDYFFGVDANVRMARTSKMN 394 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-----DAVE 313 M++ I G F L NPPFG EKD D Sbjct: 395 MIMHGDGHVGVYLHDGLINVG------GVYDNNFDVILINPPFGAHVEKDMRITSSDIPT 448 Query: 314 KEHKNGELGRFG------PGLPKISDGS------------------------MLFLMHLA 343 + FG P +LF+ Sbjct: 449 DRERALYEELFGSEYISKVYTPIKEYAQEIGKDKKIGKRILELYQINNNSTEILFIERCI 508 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402 N L+ G RA +VL L N +R+++ I I ++P D+F + Sbjct: 509 NLLKP----GKRAGVVLPEGVLDNPALD----RVRKFIESRVKILNITSIPADVFLSSGA 560 Query: 403 -IATYLWILSN 412 I L + Sbjct: 561 NIKPSLVFIEK 571 >gi|317473783|ref|ZP_07933064.1| type I restriction modification DNA specificity domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316910040|gb|EFV31713.1| type I restriction modification DNA specificity domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1249 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 89/577 (15%), Positives = 177/577 (30%), Gaps = 90/577 (15%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES------ 102 E + E + L F + + + NL Sbjct: 267 EELKFQWLEGRDNHVDFQLRLTDLYSKGMKKFLDRTVSDFNNEDFDKRCANLNEDTKQYL 326 Query: 103 -------YIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 + ++ K ++++ F E A ++ ++ + G + + Sbjct: 327 LREVNKLRLEKNNEFAIKEVYDNASFE------ENAKVVKEVVELIQGYRIRYNKRQQY- 379 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMI-RTLYD 211 +S+ +E L+ + + + A + TP + L G I + D Sbjct: 380 LSDFFELLL---TTGLKQEAGQYFTPVPIAQFIIKSLPLDSIMAEKLSRKDGEILPYMID 436 Query: 212 PTCGTGGFLTDAM-------------NHVADCGSHHKIPPILVP-------HGQELEPET 251 G+G F+T+ M ++ + H +G E + Sbjct: 437 YAAGSGHFITEFMHEIQDIINACDTSKYIEETRKHLINWQNCHFDWATNYVYGIEKDYRL 496 Query: 252 HAVCVAGMLIRR------LESDPRRDLSKNIQQGSTLS---KDLFTG-KRFHYCLSNPPF 301 V G + + SD + N + L D ++F LSNPP+ Sbjct: 497 VKVGKVGCYLHGDGLANVILSDGLANFCNNKEYKGKLRKQVNDGQKDNQQFDIVLSNPPY 556 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + + + + S+ LF+ L+ GG A ++L Sbjct: 557 SVS--SFRQTTRDYYTEQDFELYNSLTDNSSEIECLFIERTKQLLKD----GGIAGVILP 610 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SS L N ++ R +L+ I +I L ++ F TN T + L R Sbjct: 611 SSILSNSGI---YTKAREIILQYFDIVSIAELGSNTFMATNTNTVVLFLRRR-------- 659 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG---YRRI 478 + + + D R + D+ ++ S+ + + G I Sbjct: 660 ------DNYFAANTKSA------VDTYFRTLNDVTINGIETPASKYVAHVWEGLDYTDYI 707 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 +L+ L + A + I+ + + L+++ + ++ I Y VK Sbjct: 708 TLLQKLPNDKVKAHEIYAEYKKKISAKNDAKLYEAILNIEAEKLLYFILAYSQKVVIVKS 767 Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 K E + L + S I+A +K D T Sbjct: 768 GEKDVEKRFLGYEFSNRRGNEGIHAI-QKGKNIDECT 803 >gi|309808437|ref|ZP_07702336.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a] gi|308168265|gb|EFO70384.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a] Length = 329 Score = 84.6 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 92/301 (30%), Gaps = 44/301 (14%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---S 232 TP + + ++ DP G+G FL AM D Sbjct: 8 QAFTPDHICDFMCKAVGVNKNSRI----------LDPCSGSGAFLVRAMTDAMDDCDTEE 57 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291 + G E E + MLI D + N+ Q S + + K Sbjct: 58 EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 110 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + L NPP+ + K K+ D S F H + Sbjct: 111 INIVLMNPPYNATRKFCDPEYVKSWKSS----------NKEDPSKGF--HFVEYVARHIP 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL 410 + A++L S + ++ +L+N +EA+ +LP ++F+ + I Sbjct: 159 ANSKIAVLLPMQAAI--GTSSEVKKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMIF 216 Query: 411 S-NRKTEERRGKVQL-INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRENG 462 ++K + D + + G + + + LD+Y +++ Sbjct: 217 DLSQKHARSNTETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKEV 276 Query: 463 K 463 Sbjct: 277 P 277 >gi|220918152|ref|YP_002493456.1| protein of unknown function DUF450 [Anaeromyxobacter dehalogenans 2CP-1] gi|219956006|gb|ACL66390.1| protein of unknown function DUF450 [Anaeromyxobacter dehalogenans 2CP-1] Length = 950 Score = 84.6 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 101/344 (29%), Gaps = 100/344 (29%) Query: 153 RVMSNIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 V+ + YE + + V + F TP VV ++ Sbjct: 319 DVLGHAYEQFLGKHLRLTPTRRVRIEEKPLVRKAGGVFYTPDVVVAFIIRVVFAGALDGR 378 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------------------------SHHK 235 S + + DP CG+G FLT A + + S K Sbjct: 379 TTSRPL--RILDPACGSGSFLTSAFDALLRNRSGAPGAAPSRTAGIEDTSSSPLGVSEKK 436 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGS 280 +G +++P V +L+R ++ + DLS NI+ G+ Sbjct: 437 RLLTTHLYGVDIDPHAVEVAKLSLLLRVVDGESGASLKAAYDSSNEKALPDLSPNIKCGN 496 Query: 281 TL-SKDLF-----------------------------TGKRFHYCLSNPPFGKKWEKDKD 310 +L + D F F ++NPP+ Sbjct: 497 SLVASDYFGLRLTASAEETCSVNAFDWQTAFPDVFQGEDPGFDVIVANPPYVSLQSGFLA 556 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 E+ F G+ + +F+ L G +++ ++ L N Sbjct: 557 PALLEYLQSHYESFD-GI-----ADLFAMFVERALGLLSEH----GVCGMIVPTTLLMN- 605 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 +R+ LL+ + ++ L +F + T + + Sbjct: 606 ---RSFQRLRKLLLKKATLTHVIDLGDGVFRDAVVPTCIIVFRK 646 >gi|108563890|ref|YP_628206.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] gi|107837663|gb|ABF85532.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1] Length = 136 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 23/146 (15%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W A+ L G +++ +L L+ + A Sbjct: 1 MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121 + + +S ++V FY E L+ G + L IA +D + + + DF+ Sbjct: 48 DAKNNTDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIADRNELEGVIDSVDFN 104 Query: 122 STIARLEKA----GLLYKICKNFSGI 143 +L + L + K F+ + Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADL 129 >gi|157737950|ref|YP_001490634.1| Type I restriction-modification system, M subunit, putative [Arcobacter butzleri RM4018] gi|157699804|gb|ABV67964.1| Type I restriction-modification system, M subunit, putative [Arcobacter butzleri RM4018] Length = 771 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 81/501 (16%), Positives = 131/501 (26%), Gaps = 162/501 (32%) Query: 44 LECALEPTRSAVREKYLAF----------GGSNIDLESFVKVAGYSF----YNTSEYSLS 89 LE L T+ +++ SF +++ F Y S + Sbjct: 181 LEDILSKTKEFTGDEFAKLLHKCHNIIRNNDKLSPEASFDEISKILFLKIMYEKSPDDDT 240 Query: 90 TLGSTNT--------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLY 134 + S + ++Y+ D K F+D +++ K Sbjct: 241 LIFSKQKVKKEMEVHEKRVQRKETSKTYLEEKFDGVKNAFKDDGIFEENEKIKIKENSFL 300 Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 +I + + + V +E + R F TPR +V+ LL Sbjct: 301 EIVQELE--IYNLTATSEDVKGIAFETFLGR---TFRGELGQFFTPRVIVNFMVDLL--- 352 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------------------- 229 +P + DP G+GGFL A V + Sbjct: 353 -------NPQANELICDPCAGSGGFLIKAFESVKETIDNKYIEIKKKKYNELFPKDIELT 405 Query: 230 ---------------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + G + P V M++ Sbjct: 406 EKEQDKKTKLYDSYLAEINKEQEKEIEQLSKRAIFGTDANPRMARVSKMNMIMHG----- 460 Query: 269 RRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE------------ 315 D I L + RF L+NPPFG ++ VE++ Sbjct: 461 --DGHNGIHHNDGLLNVNGIFHNRFDVILTNPPFGTTLSQNSPIVEEDSKYRNDQLIETY 518 Query: 316 ---------HKNGELGRFGP------------------------GLP-------KISDGS 335 +K G F G P S G Sbjct: 519 IKKYGEELYYKAGFTETFNYANIEHRLKAKELYLEKMNQVTHNFGKPIRGLFEVGKSAGQ 578 Query: 336 --MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +LF+ + L GGR IVL L + R + I IV+L Sbjct: 579 TEVLFIERCLDLLRD----GGRMGIVLPEGVLNSSNLQ----NAREYFESRAKILLIVSL 630 Query: 394 PTDLFFRTN--IATYLWILSN 412 P ++F + + T L L Sbjct: 631 PQEIFISSGATVKTSLVFLKK 651 >gi|332358995|gb|EGJ36816.1| type I restriction-modification system methyltransferase subunit [Streptococcus sanguinis SK49] Length = 693 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 100/308 (32%), Gaps = 54/308 (17%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + + + S ++E ++ S+ F TP +V +++ Sbjct: 290 EKYDKKYGKFLNISKDFKSKLFETFMK--NSDDKSDMGQFFTPLKIVDEMVSMVDI---- 343 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDA-MNHVADCGSHHKIPP--ILVPHGQEL-----EP 249 T+ DP CG G FL +A + D S+ K + G + + Sbjct: 344 ------SEGMTICDPACGVGKFLLEAVEKRIEDSYSYSKGKLTSKIRFFGYDKMMSEKDD 397 Query: 250 ETHAVCVAGMLIRRLESDPRRDL------SKNIQQGSTLSKDL--------FTGKRFHYC 295 T + A LI E + + I + R+ Sbjct: 398 ITIILAKANTLIYFSELFQQNNSFKDVQTIAKILLNDSFYLHKSMLGTLENLEENRYDLI 457 Query: 296 LSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L+NPP+ + E D +K G G LFL + ++ GG Sbjct: 458 LANPPYYQSKEMSDLAKATDIYKYGGSGVEA-----------LFLEWIMRSVKH----GG 502 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 A IVL N + +++ I+A+++LP + FF T TY+ + + Sbjct: 503 VANIVLPDGIFSNHANKKLKEKLKELF----FIDALISLPVNAFFNTPKKTYILTIRKKT 558 Query: 415 TEERRGKV 422 E + Sbjct: 559 ENEIENNI 566 >gi|91205673|ref|YP_538028.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] gi|91069217|gb|ABE04939.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] Length = 540 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 61/406 (15%), Positives = 123/406 (30%), Gaps = 52/406 (12%) Query: 209 LYDPTCGTGGFLTD-----AMNHVADCGSHHKIPPILVPHGQEL---EPETHAVCVAGML 260 + DP CG G FL + + + E +T + A ML Sbjct: 21 ICDPACGVGKFLLEPIKSKIDRFYKIKDGKIIPKITIRGFDKGFGNNEQKTIILAKANML 80 Query: 261 I-----------RRLESDPRRDLSKNIQQGS---TLSKDLFTGKRFHYCLSNPPFGKKWE 306 I E + + ++ S TL + L+NPP+ Sbjct: 81 IYFSEVIKNYPNHTKEFADLFNSTFTLKTDSILGTLKDP--VENTYDLILTNPPYVTDGS 138 Query: 307 KDKDA--VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 + + G+ LF+ + L+ G+A I++ Sbjct: 139 SNFKEEIQKNNDLKKYYKINAMGV------EGLFMEWIIRALKP----NGKAFIIVPDGI 188 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN--RKTEERRGKV 422 + +R +L + I+ I++LP + FF T TY+ ++ KT+ + V Sbjct: 189 FNRQN----DRNLRAFLCQECFIDGIISLPENTFFTTKQKTYILCITKKNNKTDIQSDPV 244 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 +++ S R I + + + +Y + K + + + + + Sbjct: 245 FTYLVSEIGESRDVY---RFDIEQNDLIEAITLYNFFKGNKKAFENINTDPRCKIVPIEK 301 Query: 483 -PLRMSFILDK----TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 + + +D+ L + + LS L S +L + ++ V Sbjct: 302 FESEIYWSIDRWWSKEEKITLGIEKENKTLSVLEFSSYLSCMADTLENFSLGLKKIKIVN 361 Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583 + + I +F + PV E P Sbjct: 362 NNQTKKV--KIGNIFDFPAIKGITKSFIESNKGNIPVYGGKKEQEP 405 >gi|255525761|ref|ZP_05392692.1| type I restriction-modification system, M subunit [Clostridium carboxidivorans P7] gi|255510584|gb|EET86893.1| type I restriction-modification system, M subunit [Clostridium carboxidivorans P7] Length = 128 Score = 84.3 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 46/134 (34%), Gaps = 18/134 (13%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTR 52 + + ++ + +W A +L G +++ IL F R L E Sbjct: 1 MSNNLQTITSKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEKYLVGNNVIDVEKG 60 Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111 ++ + YL + ++ Y + + +L + + + Sbjct: 61 ESINDAYLKQAVGADLDDYLQDISLSLGYAIAPNDTWESLINKINDAQVIP------SDY 114 Query: 112 KAIFEDFDFSSTIA 125 + IF++F+ +S I Sbjct: 115 QTIFDNFNKNSGIK 128 >gi|224437223|ref|ZP_03658200.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818] gi|313143683|ref|ZP_07805876.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818] gi|313128714|gb|EFR46331.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818] Length = 561 Score = 84.3 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 80/457 (17%), Positives = 145/457 (31%), Gaps = 77/457 (16%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 SFS + F L L KI K + + + + H+I Sbjct: 60 ESFSQALQEAFGA----ELYTPLNPNANLLKILKVVHTQTITNSVIEE------FLHIIT 109 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + + TP ++ L +L ++Y+P G G Sbjct: 110 Q--KKTTHKLFSYSTPLEINELLVGILDI----------KETESVYNPCYGMGSLFFAIC 157 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 NH + +G+ELE + + S+++ + L+ Sbjct: 158 NHAK----------NVELYGEELESTLAKIAK-------ITCKILNLSSQHLVLNNILTN 200 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLA 343 F +F + NPP E RF + +LFL+H Sbjct: 201 AQFKHHKFDKIICNPPLDSHIGTQF--------LKEDERFSSYETLIKTYPELLFLIHSL 252 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + L+ +L + L S E +R L E+ LIEAI+ LP ++F Sbjct: 253 SHLKDKG------VFILRTQTLLKS---SLEGRLREKLCEDRLIEAIIELPKNIFPHQAH 303 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + +LS + INA R +GK R+IN +L +Y + + Sbjct: 304 DFSIIVLSQN-----NDSILHINANTP-HFYRKDGKYNRLIN---LSSLLALYKHKATSE 354 Query: 464 FSRMLDYRT-------FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516 S + + GY K + + S L ++ + +F+ Sbjct: 355 HSTLTPLKQINPHDLSVGYYLHKPKQEVADSLYLKDLQVSIFRGQRVYGSPKDEKITFF- 413 Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + +G+ + F + K ++ K K Sbjct: 414 ---DLGVADFAEFGFCDEFSTQRFKGDKTKIKKYALK 447 >gi|145642017|ref|ZP_01797589.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae R3021] gi|145273288|gb|EDK13162.1| putative type I restriction-modification system, methyltransferase subunit [Haemophilus influenzae 22.4-21] Length = 90 Score = 83.9 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Query: 8 AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62 L +FIW A+D L + + VILP +LRRL+ LEP++ AV E+ Sbjct: 6 HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEMRFQKEEL 65 Query: 63 GGSNIDLESFVKVAGYSFYNTSE 85 + +D K+ F+ T Sbjct: 66 AFTELDDLPLKKLP-AMFFITPR 87 >gi|313896499|ref|ZP_07830050.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974923|gb|EFR40387.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 798 Score = 83.9 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 74/561 (13%), Positives = 150/561 (26%), Gaps = 125/561 (22%) Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L + F ED F + +I + + Sbjct: 238 LKARGIDQAYMQ--NLFDTTKIEFKEDHLFEDNDEIKIRENSFVQILEKLEN--YNLSDT 293 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 D V +E + + F TPR +V T +L P + Sbjct: 294 QDDVKGIAFEQFLG---TTFRGELGQFFTPRTIVDFMTEIL----------DPQEGEVIC 340 Query: 211 DPTCGTGGFLTDAMNHVA------------------------------------------ 228 DPTCG+GGFL A +V Sbjct: 341 DPTCGSGGFLIKAFEYVREKIEADVRLQKEKLRASLEGNDFDSKLEEEQIEISDKIDAMQ 400 Query: 229 -----DCGSHHKIPPILVP-----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + + K + +G + P M++ Sbjct: 401 TALNTELDTSIKESRMYQLSRNCIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDG---- 456 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK----------DAVEKEHKNGELGRFGPGL 328 L+ + +RF L+NPPFG+ ++++ + +++++K + L Sbjct: 457 --LLNVNGIFEERFDVILTNPPFGQNVDRNQLISEADRFTDEEMKRKYKQKYGKSYDEAL 514 Query: 329 PKISD------------------GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++ D +LF+ L+ GGR +VL L N Sbjct: 515 KQVDDHIGASLLSLYDLGNTSTLTEVLFMERCLRLLKK----GGRMGMVLPEGVLNNKNL 570 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 + +R + + I ++P D+F ++ RK + + Sbjct: 571 ----ATVREYFEGRAKLILICSIPQDVFIAAGATVKPSLVFMRK---------FTD-EEE 616 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS--- 487 R + + + +I D+ + + + + RI++ + + Sbjct: 617 QEYARCKKTALDEVTALHQPEIDDLNTTIAECSSNTDILKKDLKDARIRMKQAKKAKDAD 676 Query: 488 -FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 ++K A R + D+ K + + P + I + Sbjct: 677 FSAIEKEVEAIQLEQKENRDSKKSAEKALKDLQKQIADETKPVVKKKFDYDVPIAKIDDA 736 Query: 547 TLKVKASKSFIVAFINAFGRK 567 + + S Sbjct: 737 GITTTGAASEGNQLPALVNEY 757 >gi|170079642|ref|YP_001736275.1| Type I restriction modification system, N-6 DNA methylase [Synechococcus sp. PCC 7002] gi|169887311|gb|ACB01020.1| Type I restriction modification system, N-6 DNA Methylase [Synechococcus sp. PCC 7002] Length = 1179 Score = 83.9 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 69/443 (15%), Positives = 138/443 (31%), Gaps = 80/443 (18%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + L V E+ + + E E+ + T +N ++ Sbjct: 203 DEVLANAGVDVFEEVFKLIFTKLYDEWLSGQGSNRNKRILEFRNTGQTETALKNKIQDLF 262 Query: 105 ASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 + + +F ED + T + L + K F+ V+ +E+L+ Sbjct: 263 DRAKEKWEGVFSEDSKITLTPSHLSVCVRSLENVKLFNSN--------LDVIDEAFEYLV 314 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + TPR V+ + +L +P + D G+ GF Sbjct: 315 ---NQSSKGEKGQYFTPRYVIDMCVKML----------NPQEDEYMIDTAAGSSGFPVHT 361 Query: 224 MNHVADCGSHHKIPPILVP------------------HGQELEPETHAVCVA-------- 257 + HV + + + ++ V Sbjct: 362 IFHVWKQILEDEGIEASHLFTIEEKPHRCTEYVEKRVFAIDFDEKSVRVARTLNLIAGDG 421 Query: 258 ---GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCLSNPPF 301 M + L+ D +++K T D F + F ++NPPF Sbjct: 422 QTNVMRLNTLDYDGWDEITKEESWNDTY-NDGFKRLKKLRKNSNSYKEFEFDVLMANPPF 480 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 ++ + + G++ + + +LF+ + L+ GGR AIVL Sbjct: 481 AGDIKEGRIIHKYALSKKPNGKWQTKVGR----DILFIERNLDFLKP----GGRMAIVLP 532 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420 N S + +IR ++ E I A+V L + F T T + ++ + R G Sbjct: 533 QGRFNN----SSDKQIREFIAERCRILAVVGLHGNTFKPHTGTKTSVLLVQKWNDDPRAG 588 Query: 421 KVQ--LINATDLWTSIRNEGKKR 441 + + + +++ GK Sbjct: 589 ALCPRQDDYNIFFATMQKSGKDN 611 >gi|238854548|ref|ZP_04644885.1| putative N-6 DNA methylase [Lactobacillus jensenii 269-3] gi|282932366|ref|ZP_06337799.1| putative N-6 DNA methylase [Lactobacillus jensenii 208-1] gi|238832841|gb|EEQ25141.1| putative N-6 DNA methylase [Lactobacillus jensenii 269-3] gi|281303523|gb|EFA95692.1| putative N-6 DNA methylase [Lactobacillus jensenii 208-1] Length = 569 Score = 83.9 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 112/349 (32%), Gaps = 70/349 (20%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 ++ + T ++ + +F I L+ +L K+ Sbjct: 213 KFRVVEDNPKKTAETIKQLYNEAKNRWNDVFTK---DDEI-TLDD-DVLIKVVAQLQHYS 267 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 L V+S +E +I F TP +V L + +P Sbjct: 268 LMNSNRN--VISEAFESIISY---ATKGSQGQFFTPENVARLMVEI----------ANPT 312 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHA 253 T++DP GT GFLT +M HV + K+ G E + Sbjct: 313 ESTTVFDPASGTAGFLTTSMFHVWNQIQQTKMRDDAKKDKEQQYATNNLFGIEKDSFLAK 372 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKW 305 + A M + D I +L + + K+F+ L+NPPFGK Sbjct: 373 ISKAFMAVLG-------DGRAGIFVEDSLKEKNWKIATQAKIKDKKFNIILTNPPFGKDI 425 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + + E F G + + F+ LE GG ++L + Sbjct: 426 KLSTETKEN---------FEFG----NKIELAFIEMSLRYLEK----GGILGVILPETVF 468 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412 +A ++R L + I I+ LP D F + N T + L Sbjct: 469 HAPKAR----QVREKLFYKNNITHIIDLPHDTFRPYN-NAKTDIIFLRK 512 >gi|310287718|ref|YP_003938976.1| N-6 DNA methylase [Bifidobacterium bifidum S17] gi|309251654|gb|ADO53402.1| putative N-6 DNA methylase [Bifidobacterium bifidum S17] Length = 843 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 99/274 (36%), Gaps = 57/274 (20%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + V +G + TP+ ++ A L+ + DP CGTGGFL + + Sbjct: 299 SANVKQGEGQYFTPQRIIESAVKLMEIDYHD----------KVIDPACGTGGFLFETYST 348 Query: 227 VA-----DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + + +G +L+ + A M+ RD S NI G + Sbjct: 349 LLKRASGEQRDEIRTWAHRNLYGVDLDSINVKLARALMI-------GARDGSTNIVLGDS 401 Query: 282 LSKDLFTGK-------------RFHYCLSNPPFGKKWE------KDKDAVEKEHKNGELG 322 L + + + L+NPPFG++ + K +H +G Sbjct: 402 LREQKWQDFPMLTPVLGRETDGSYDVVLTNPPFGERLKIRATDAKQAKYSICQHTSGGYP 461 Query: 323 RFGPGLPKISDGS--MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 SD ++F+ L GGGR IVL + F+ S R+W Sbjct: 462 SDKY-----SDTELGLVFMERAYRLL----AGGGRLGIVLPETYFFS----SSYQWFRKW 508 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 + + + A++ +P + F T +++ + Sbjct: 509 VSRHFDVLAVMNIPMEAFQGFCRAKTNFYVMRKK 542 >gi|48243647|gb|AAT40788.1| putative type I restriction/modification methyltransferase [Haemophilus influenzae] Length = 167 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 9/169 (5%) Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 + E EIR+ ++ DL+E +VALP LF T I +W L+ K +R+G+V I+A Sbjct: 1 SQTNNEGEIRKAIINADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDAR 58 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 + R D +I D + + S + + + + F Sbjct: 59 QIGYMKDRV---LRDFTADDIAKIADTLHAWQT---SDGYEDQAAFCKSTTLEEIAGNDF 112 Query: 489 ILDKTGLA-RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 +L E + + Q+ + + + + + Sbjct: 113 VLTPGRYVGTAEQEDDGVPFAEKMQNLTALLKEQFAKSTELEAEIKKNL 161 >gi|34557965|ref|NP_907780.1| DNA methylase-type I restriction-modification system [Wolinella succinogenes DSM 1740] gi|34483683|emb|CAE10680.1| DNA METHYLASE-TYPE I RESTRICTION-MODIFICATION SYSTEM [Wolinella succinogenes] Length = 1073 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 64/408 (15%), Positives = 129/408 (31%), Gaps = 85/408 (20%) Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 S ++ V+ + +E+L+ + + TPR V+ + +L Sbjct: 231 SLQDVKLFNSNLDVIDDAFEYLVNK---TSKGEKGQYFTPRYVIDMCVKML--------- 278 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVP 242 +P T+ D G+ GF + V Sbjct: 279 -NPQEEETMIDTASGSCGFPIHTVFEVWRKIYKDLGIEESHLFTAEKKHERALEYVREKV 337 Query: 243 HGQELEPETHAVCVA-----------GMLIRRLESDPRRDLSKNIQQGS----------T 281 G + + ++ V + + L+ + +K+ Sbjct: 338 FGIDFDDKSVRVSRMLNIIAGDGHTNVLNLNSLDFSRWEETTKDESWQDIYFDGWRRLKK 397 Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L D + K + + ++NPPF ++ + + E G+F + + +LF+ Sbjct: 398 LRSDKNSDKAYEFDIVMANPPFAGDIKESRILHQYELGKNASGKFQTKVGR----DILFI 453 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 L+ GGR A+VL N S + IR ++ I A+V L ++F Sbjct: 454 ERNLEMLKS----GGRMAVVLPQGRFNN----SSDKYIRDFIASKCRILAVVGLHGNVFK 505 Query: 400 -RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T T + + K + + +++ K D+ +I YV Sbjct: 506 PHTGTKTSVLFVQKWDAILCPKK---EDYPIFFATMQKSSK------DNSGDKI---YVK 553 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +G S LD + V L + + G+A + ++ Sbjct: 554 NSDG--SNRLDSHD----HLIVEHDLYNHDGITQDGIAEAFLEFAKKE 595 >gi|315634181|ref|ZP_07889470.1| type I site-specific deoxyribonuclease [Aggregatibacter segnis ATCC 33393] gi|315477431|gb|EFU68174.1| type I site-specific deoxyribonuclease [Aggregatibacter segnis ATCC 33393] Length = 673 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 65/447 (14%), Positives = 130/447 (29%), Gaps = 107/447 (23%) Query: 44 LECALEPT--------RSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGS 93 L L + + + ++ E F + + L Sbjct: 172 LSDILNEKYTIHDLIKHDKLVNERKSLKDLILEMEDEVLANAGIDVFEEVFKLIFTKLYD 231 Query: 94 T-NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTV 150 + N + Y+ ++ I + + I L K + + I+L P + Sbjct: 232 EMQSGRNEKRYLEFRNNGNTEI----ELKNKIQSLFKKANEKWEGVFSKDAKIQLTPSHL 287 Query: 151 P---------------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 V+ +E+LI + + TPR ++ + +L Sbjct: 288 SVCVSSLQDVKLFNSNLDVVDEAFEYLISK---SSKGEKGQYFTPRYIIDMCVKML---- 340 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ---------- 245 +P ++ D G+ GF + HV + + Sbjct: 341 ------NPTKDESIIDTASGSCGFPVHTIFHVWEQILKEEGLHKSHLFTSKEKPIECTDY 394 Query: 246 --------ELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGST---------- 281 + + + V LI L + + + G+T Sbjct: 395 VTTKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDWERWDEKTGNTKKEIVGDTEW 454 Query: 282 ---------------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +S + +F ++NPPF ++ + + E G+ Sbjct: 455 LDTYGEGWKKIRQLRVSNESNRDFKFDILMANPPFAGDIKESRILAKYELGKKPNGKTQT 514 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + + +LF+ + L+ GGR AIVL N S + IR ++ E Sbjct: 515 KVGR----DILFIERNLDFLKD----GGRMAIVLPQGRFNN----SSDKAIREFIAERCR 562 Query: 387 IEAIVALPTDLFF-RTNIATYLWILSN 412 I A+V L ++F T T + + Sbjct: 563 ILAVVGLHGNVFKPHTGTKTSVLFVQK 589 >gi|320536548|ref|ZP_08036573.1| N-6 DNA Methylase [Treponema phagedenis F0421] gi|320146603|gb|EFW38194.1| N-6 DNA Methylase [Treponema phagedenis F0421] Length = 757 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 76/449 (16%), Positives = 133/449 (29%), Gaps = 115/449 (25%) Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKN-FSGIE-----LHPDTVPDRVMSNIYEHLIRR 165 + +FE +L +I +N F I + T D V +E + + Sbjct: 244 QNLFEKTKQEFANDKLFDDNAKIEIRENSFEQIVKELQIYNLSTTSDDVKGIAFEQFLGK 303 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F TPR +V+ ++L P + DP CG+GGFL A Sbjct: 304 ---TFRGELGQFFTPRTIVNFMVSVL----------DPQEGEYICDPCCGSGGFLIKAFE 350 Query: 226 HVA-----------------------DCGSHHKIPPILV--------------------- 241 +V + S + I Sbjct: 351 YVREKIEKDIVAQKEKIKADLYDEKYEKMSDDEKKQIDHKMSEVANKLNEELNILNDNGR 410 Query: 242 --------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +G + P M++ L+ + RF Sbjct: 411 LRSLSYDCIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDG------LLNVNGIFENRFD 464 Query: 294 YCLSNPPFGKKWEKDKD------AVEKEHKNGELGRFGPGLPKI-------SDGSMLFLM 340 L+NPPFG + EKD ++E R+G + + S+L L Sbjct: 465 VILTNPPFGARVEKDLKISYADMFTDEEKIEEYTARYGEAYKEALKQVNDNINKSLLSLY 524 Query: 341 HLANKLEL---------PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + L GGR IVL L N ++R ++ I IV Sbjct: 525 KIGSGLTEVLFIERRLNLLVPGGRMGIVLPEGVLNNTNLQ----KVRDFVESKAKILLIV 580 Query: 392 ALPTDLFFRTNIATYLWILSNRK------------TEERRGKVQLINATDLWTSIRNEGK 439 ++P D+F + +L +K E+ +V A +L K Sbjct: 581 SIPQDVFIASGATVKPSLLFFKKFNEEEAKQYADIEEDATNEVNKKYADELSQIDAQLAK 640 Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468 + + ++++ L + G+ + + Sbjct: 641 RGKEALPQEKKKELRTQRKKIEGQKASEI 669 >gi|310831373|ref|YP_003970016.1| putative type I restriction modification enzyme, M and S domains [Cafeteria roenbergensis virus BV-PW1] gi|309386557|gb|ADO67417.1| putative type I restriction modification enzyme, M and S domains [Cafeteria roenbergensis virus BV-PW1] Length = 817 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 106/348 (30%), Gaps = 30/348 (8%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAK---AIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 L N ++ I N + + +D DF + +K +L + ++ + Sbjct: 124 LIKSKDKNEGKSILEKIGDLLSNHRTTSRVVKDIDFINC----KKTNILISLIEDINEFC 179 Query: 145 LHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 ++ YE + + + +F T R ++ + L+ D + Sbjct: 180 TKYHIFEYSDIIGIAYEFWMNEYKGGSGKELGNFFTERKLMRMCFELIDKEDIDNLNIN- 238 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 T+ D CGT GF + D + +G E E C ML Sbjct: 239 -KNSTIGDEFCGTFGFPLYFKQFLKDKYKINIKNKN--IYGVEFED---RACRMAML--- 289 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNG--E 320 + D N+ +G + ++ + N PFG + + K +E++ + Sbjct: 290 -NAMFSLDNIDNVTRGDSFITNVSP--HLDISVHNVPFGSRMKYKHVKEHYEEYQINHSD 346 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + F + ++ + ++ G R+ Sbjct: 347 IPNFDEIIKSKANQDATLSSQMVIY-----KTNKIGICIIKDGQEATGTTKEL-LAYRKH 400 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 ++ ++ I+ +P+ F T T + + ++ Sbjct: 401 FCDSVNLKKILKIPSGAFSSTGTKTLCLYFVKDGNKTENLQFLELDTE 448 >gi|111224792|ref|YP_715586.1| putative Type I restriction-modification system, M subunit [Frankia alni ACN14a] gi|111152324|emb|CAJ64058.1| Hypothetical protein; putative Type I restriction-modification system, M subunit [Frankia alni ACN14a] Length = 845 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 45/270 (16%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++ L+R + + TPR +V L AL + D + L+DP Sbjct: 298 TVFGDLLRHYELWDTHSGPPATTPRSLVELIMALFVRAGDQV---------HLHDPYARA 348 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G L A K + G +P+ + G+ + ++ Sbjct: 349 GEMLLGAW----------KAAGSVTLSGSGADPDLCRLAEMGIRLSGGQARLTPGSPTPW 398 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 ++ ++NPPF + + P + + Sbjct: 399 REA--------PAALADLIVTNPPFNATSTRA-----------PYDTWLFDPPPAHNDNY 439 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 +L H+ L GG+A +V+ + + E +R+ +L+ +E IVALP Sbjct: 440 AWLQHVLASLAP----GGKAGVVMPNRAAASDDDR--EQRLRQHMLDTGTVEFIVALPRQ 493 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLIN 426 LF T +A LW L V + Sbjct: 494 LFAPTRVAAMLWGLRAP-GTRPGDDVLFLE 522 >gi|330899953|gb|EGH31372.1| Type I restriction-modification system methylation subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 71 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L ++K A+ L G ++F + I L+R E V + + G S Sbjct: 4 TLQQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFEERYEEVVAQEIRAGKSQ 63 Query: 67 ID 68 + Sbjct: 64 AE 65 >gi|288802385|ref|ZP_06407825.1| putative type I restriction-modification system, M subunit [Prevotella melaninogenica D18] gi|288335352|gb|EFC73787.1| putative type I restriction-modification system, M subunit [Prevotella melaninogenica D18] Length = 677 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 148/470 (31%), Gaps = 107/470 (22%) Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKICK 138 FY T+ ++ G + + IFE D L L + Sbjct: 223 FYTTASERNNSDGQATVYKRIAAIFEEVKKKQGKIFEANDRIKLEPRTLSH---LVGELQ 279 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 +S ++ D YE ++ S + +F TPR+V+ +A A++ Sbjct: 280 KYSLLDTRIDFK-----GKAYEEIVG---SNLRGDRGEFFTPRNVMQMAVAMI------- 324 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHV------------------------ADCGSHH 234 +P + D +CGTGGF+ AMN V + Sbjct: 325 ---APQEGEKVLDSSCGTGGFVVTAMNAVIATIKSKMQKDYGENLEDWPPVVRDAFNNKI 381 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291 G ++ P+ M++ D S NI Q ++L + Sbjct: 382 TEIAGENFFGFDINPDLVKATKMNMVMNN-------DGSGNIIQLNSLLPPHEWSEEKKQ 434 Query: 292 ---------------------FHYCLSNPPFGKKWEKDKDAVEKEHK------NGELGRF 324 F ++NPPFG K + + ++ + G + Sbjct: 435 LLEERMGRPKNSIVNHKTIDLFDVIVTNPPFGSKIPINDQQILEQFDLAHSWVKDQHGNW 494 Query: 325 -------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 +P +F+ + L GGRAAIVL S + I Sbjct: 495 LMNSTKLRGSVPP----EQIFIERIVQLLRP----GGRAAIVLPDSIFSSPGLE----FI 542 Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGK--VQLINATDLWTSI 434 R WL+ + I A + L D F + + + TEE + + + I ++ ++ Sbjct: 543 RVWLMRHTHIIASIDLHADTFQPHNGTQCSILFVVKKTTEELQEEQNLGFIPDNQIFMAM 602 Query: 435 -RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVLR 482 + G +R +R + ++ + E + YR+ Sbjct: 603 VDHIGHDKRGNTIYKRDEEGNLILRHEENDVREVDATTGEVTYRKETFEE 652 >gi|332639087|ref|ZP_08417950.1| hypothetical protein WcibK1_10375 [Weissella cibaria KACC 11862] Length = 154 Score = 82.3 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 41/139 (29%), Gaps = 12/139 (8%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M + T + + +W+ A+ L G + + V+L L+ + + ++ Sbjct: 1 MAKKTAEL-KIEDALWQAADQLRGSMDASQYRNVVLGLIFLKYVSDSFNEKYESLI---- 55 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKA 113 + + A F+ E + S + I +D K Sbjct: 56 NSDYPEDAEDRDMYTAENIFWLPKEARWDVIASAAKTPEIGETIDKAMEAIERENDQIKG 115 Query: 114 IFEDFDFSSTIARLEKAGL 132 + S + + + Sbjct: 116 VLPKNYASPDLDKGADVKI 134 >gi|228476637|ref|ZP_04061317.1| type I restriction enzyme EcoR124II M protein [Streptococcus salivarius SK126] gi|228251735|gb|EEK10809.1| type I restriction enzyme EcoR124II M protein [Streptococcus salivarius SK126] Length = 100 Score = 81.9 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 14/100 (14%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 YE+LI + + + +F TP+ V L + + + + K +YDP G+G Sbjct: 1 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHKQETVNK--------IYDPAAGSGS 52 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 L A H + GQE+ T+ + Sbjct: 53 LLLQAKKHFDNHIIEEG------FFGQEINHTTYNLARMN 86 >gi|301598198|ref|ZP_07243206.1| putative restriction-modification protein [Acinetobacter baumannii AB059] Length = 217 Score = 81.9 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 90/252 (35%), Gaps = 42/252 (16%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 G+E+ + M++ D I Q TL + + + ++N PF Sbjct: 1 MFGREITSNA-KLAKMNMILHG-------DGHSGICQIDTLQNPIESE--YDVVITNMPF 50 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 +K K K +DG + ++H + GGR A+V+ Sbjct: 51 SQKTSYSHLYENKLAK--------------NDGDGVCVLHCFKATKK----GGRMALVVP 92 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420 LF +R++L EN ++A+V+LP ++F + T + +N Sbjct: 93 EGFLFKAALAP----VRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNS 148 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIK 479 V N T+ S+ + RR I+++ + + + S Y G+ ++ Sbjct: 149 DVFYYNVTNDGLSLDSF---RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVN 200 Query: 480 VLRPLRMSFILD 491 +I + Sbjct: 201 PELIRSNDYIYN 212 >gi|283954609|ref|ZP_06372127.1| hypothetical protein C414_000240012 [Campylobacter jejuni subsp. jejuni 414] gi|283793801|gb|EFC32552.1| hypothetical protein C414_000240012 [Campylobacter jejuni subsp. jejuni 414] Length = 687 Score = 81.9 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98 + ++ +++ L + ++ E F + L Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237 Query: 99 --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147 +Y S S+ + I + FD + EK L L + ++L Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + V+ + +E+L+ + + TPR V+ + +L +P Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342 Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249 ++ D G+ GF +V + S + G + + Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402 Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285 ++ V ++ ++ S + + KD Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKN 462 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F ++NPPF ++ + E E G+ + + +LF+ + Sbjct: 463 QNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404 L+ GGR AIVL N S + IR ++ + I A+V L ++F T Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570 Query: 405 TYLWILSN 412 T + L Sbjct: 571 TSVLFLQK 578 >gi|163785235|ref|ZP_02179907.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159879497|gb|EDP73329.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 162 Score = 81.9 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 17/137 (12%) Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 E +IR+ +E DLIEA++ LP +LF+ T + +L+ K + + ++ LINA++ + Sbjct: 13 ERDIRKKFVEQDLIEAVILLPENLFYNTTAPGVIIVLNKNK--KHKEEILLINASEKYEK 70 Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493 G+ + I+ +I ++Y + + + + I + + L + Sbjct: 71 ----GRPKNILT--GIDEIAEVYHNWKEVEKFSKI---------ITKEEAQKNDYNLSPS 115 Query: 494 GLARLEADITWRKLSPL 510 + + L Sbjct: 116 RYITIAEEEEIIPLDDA 132 >gi|32266590|ref|NP_860622.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449] gi|32262641|gb|AAP77688.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449] Length = 563 Score = 81.9 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 73/424 (17%), Positives = 142/424 (33%), Gaps = 65/424 (15%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + + + H+I + + + + TP ++ L LL + Sbjct: 95 NDTSNHTI-EEFLHIITQ--KKTTHKLFSYSTPLEINELLVGLLDI----------KESQ 141 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 ++Y+P GTG N+ +G+ELE + + + L+ + Sbjct: 142 SIYNPCYGTGSLFFAIANYAH----------SFELYGEELESSLARIAKI--ICKILDLN 189 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-P 326 + + NI L F ++F + NPP E RF Sbjct: 190 TQHLILNNI-----LKNAQFKNQKFDKIICNPPLDSHIGTQF--------LKEDERFATY 236 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + +LFL+H + L+ +L + L S E +R L E L Sbjct: 237 EALIKTYPELLFLIHSLSHLKDKG------VFILRTQTLLKS---SLEGRLREKLCEEGL 287 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 IE+I+ LP ++F + +LS + INA +GK R++N Sbjct: 288 IESIIELPKNIFPHQTHEFSIIVLSPNNRA-----ILHINANAP-HFYHKDGKYNRLVN- 340 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 +++L+IY + G +S + ++V R +I + + + Sbjct: 341 --LKELLNIYRHKYVGTYSSLTPLSEIDPHDLRVAR-----YIQEPQSSRKNHTLLGALN 393 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVK---ESIKSNEAKTLKVKASKSFIVAFINA 563 ++ K + G A+ + + + K K K K + + A Sbjct: 394 INVFRGQRVYGSAKDEKITYFDLGIADFMDFGFSDELSTQRLKGDKSKIEKYQLKPYDIA 453 Query: 564 FGRK 567 + Sbjct: 454 LSIR 457 >gi|86150507|ref|ZP_01068732.1| dna methylase-type I restriction-modification system [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839102|gb|EAQ56366.1| dna methylase-type I restriction-modification system [Campylobacter jejuni subsp. jejuni CF93-6] Length = 687 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98 + ++ +++ L + ++ E F + L Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237 Query: 99 --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147 +Y S S+ + I + FD + EK L L + ++L Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + V+ + +E+L+ + + TPR V+ + +L +P Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342 Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249 ++ D G+ GF +V + S + G + + Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402 Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285 ++ V ++ ++ S + + KD Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATRN 462 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F ++NPPF ++ + E E G+ + + +LF+ + Sbjct: 463 QNRDFNFDILMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404 L+ GGR AIVL N S + IR ++ + I A+V L ++F T Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570 Query: 405 TYLWILSN 412 T + L Sbjct: 571 TSVLFLQK 578 >gi|315638642|ref|ZP_07893816.1| type I restriction/modification enzyme [Campylobacter upsaliensis JV21] gi|315481266|gb|EFU71896.1| type I restriction/modification enzyme [Campylobacter upsaliensis JV21] Length = 1191 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 122/430 (28%), Gaps = 50/430 (11%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 +L KI + ++ + +++E + + + + F TP + + Sbjct: 405 KILTKITNLIQDFYISQSE-NNQFLGDLFEGFLNK---SIHQTEGRFFTPTPITNFIIHS 460 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 L D + + D CG G FLT+ + H +G E + Sbjct: 461 LPHLQDDI---------KVLDFACGAGHFLTEFITH----------KSEAKLYGIEKNKD 501 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW--EKD 308 V L+ + + + KD F + F LSNPP+ K Sbjct: 502 LSKVAKTACLLHNAKEAQVIFQDALDEIKESDKKD-FENESFDLILSNPPYSVKGFLSTL 560 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 +++V K ++ F K + +VL S L G Sbjct: 561 EESVLKNFTLSSAVENHY----KNNAIECF---FIEKAKQFLKPNALLVLVLPVSILQKG 613 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG--KVQLIN 426 + R L EN I +IV + + F T T + + + N Sbjct: 614 GI---YEKTREVLFENFQILSIVEMSSRTFGSTGTQTIILFAKRMEKPYATELINILKEN 670 Query: 427 ATDLWTSIRNEG-KKRRIINDDQRRQILDIYVSREN----GKFSRMLDYRTFGYRRIKVL 481 A D R G +++ I + Y ++ S L + Sbjct: 671 AFDDEILQREYGSSEKKDIIYKYCDFMAYDYADFKDFMSGLPLSENLKNNE-------IF 723 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 + F K + + + K + + Y + + + K Sbjct: 724 KEYLSDFSTTKPKKFKKQKLKDFEKKALFDTYLKQKQEAIKDTKAYNKAYRDFKESKDYK 783 Query: 542 SNEAKTLKVK 551 E K Sbjct: 784 ELEKALHYEK 793 >gi|258452701|ref|ZP_05700700.1| type I restriction-modification system [Staphylococcus aureus A5948] gi|282924136|ref|ZP_06331811.1| type I restriction-modification system [Staphylococcus aureus A9765] gi|257859676|gb|EEV82525.1| type I restriction-modification system [Staphylococcus aureus A5948] gi|282592931|gb|EFB97933.1| type I restriction-modification system [Staphylococcus aureus A9765] Length = 197 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 36/127 (28%), Gaps = 20/127 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E E A G Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQ------EYADALSGE 123 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123 +I + Y L + FS + I E DF Sbjct: 124 DITYQEAWADEEYR---------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 171 Query: 124 IARLEKA 130 I L A Sbjct: 172 IEHLATA 178 >gi|126654680|ref|ZP_01726214.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110] gi|126623415|gb|EAZ94119.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110] Length = 883 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 64/405 (15%), Positives = 125/405 (30%), Gaps = 79/405 (19%) Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGSTNTRN--NLESYIASFSDNAKA 113 + + + + V G + N + +++L + N+ SY + +N Sbjct: 248 QDESEKEDGQEYDFQVYQYGNNIENQDKVYERINSLYRRALKEQLNISSYQNANDEN--- 304 Query: 114 IFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + F L+Y + + FS +E ++ + +E + R Sbjct: 305 VINRNKFPV-------NKLVYTVQQLETFSFLEGRSSLDGKDILGDFFESITR---DGFK 354 Query: 172 EGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP +V+ L AL +D + + + DP+ G+G FL +AM + Sbjct: 355 QTKGQFFTPTPIVNFLLYALQIDNLAIEKLNNDKELPFIIDPSAGSGTFLVEAMKIITKE 414 Query: 231 -------------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + EL + M++ Sbjct: 415 LKYKQHGQIKSSRGVKDRFEELFMPDRKENKWAREYLYACELNFDLGTASKVNMILHGDG 474 Query: 266 SDPRRDLSKNI----------------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 S + L D +F ++NPPF Sbjct: 475 STNIFVQDGLLPFRYYIKETKPNYLETVSSDILYNDKEVNAKFDVVITNPPFSVD----- 529 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 ++++ + F G + LF+ L+ GGR ++L S Sbjct: 530 --LDRQTQREVKNIFLFG--DRKNSENLFIERYYQLLKE----GGRLGVILPESVFDTTE 581 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 IR +L + I+A+++LP +F T+ T L + Sbjct: 582 N----KYIRLFLFKYFQIKAVISLPKIVFEPFTSTKTSLLFAQKK 622 >gi|293363450|ref|ZP_06610207.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2] gi|292552970|gb|EFF41723.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2] Length = 108 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + E + +F TP++V L L L + K + T+YDP CG+G L Sbjct: 1 MAMYAGEAGKSGGEFFTPQEVSELLARLTLIDFNHPNKNDKIKVSTVYDPCCGSGSLLLK 60 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 + K +GQE+ T+ + M + + Sbjct: 61 FAKIL------GKENVTDSFNGQEINHTTYNLARINMFLHDINFHKFHI 103 >gi|38505785|ref|NP_942404.1| type I restriction-modification system M subunit [Synechocystis sp. PCC 6803] gi|38423809|dbj|BAD02018.1| type I restriction-modification system M subunit [Synechocystis sp. PCC 6803] Length = 59 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 7 SAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 S ++ NFIW A+D L + + VILP T++RRL+ LEP++ V Sbjct: 5 SHNNIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDAVLEPSKEKVL 55 >gi|159901785|ref|YP_001548030.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779] gi|159894824|gb|ABX07902.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779] Length = 623 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 82/485 (16%), Positives = 145/485 (29%), Gaps = 79/485 (16%) Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYK---------ICKNFSGIE 144 + L F AK I +D IA L + L + I+ Sbjct: 3 DIAAGLNEIWKIF--RAKGIVDDLLIIDHIATLLLEQNSLSPPSGLQGEPVLLPKVDEIK 60 Query: 145 LHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + E R F + + + TPR +V + + Sbjct: 61 TRLSALSTLLEGGAAELFDRYILFRLDQTHLGGRYPTPRHLVKFMRTIAHVTAND----- 115 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 +L D CG+GG L G + +G E+ P+ + A + Sbjct: 116 -----SLLDLACGSGGML---------AGRAQSAEHPTLTNGLEISPQWARLAWANCALH 161 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 L+ I+ L+ + L NPPFG + + + E + Sbjct: 162 GLKDFT-------IEIADALTYPQ--AISVNRILMNPPFGTQVSTEGLSGRSETRL---- 208 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 + L GR ++ + LF G E E+R+ L Sbjct: 209 ----------------IEQAIKWLAD----NGRLCVLAPAGILFGGGR---EKELRKNLC 245 Query: 383 ENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 N I AI+ALP D F F T + TYL +++ + ++ + R+ K+ Sbjct: 246 TNQQINAIIALPKDTFQPFST-LQTYLLLITKSVPQAGTWFIRAERDGYMRGRGRDLTKQ 304 Query: 441 RRIIND-DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL-ARL 498 +D IL + D + YR++ + + + ++ Sbjct: 305 PTDASDFPLIESILGWDNTWNLTD-----DQQLLSYRQLTIDEERVLIIGAPAGSIFTQV 359 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558 E K L K + + + ++ K K K K +V Sbjct: 360 ERYSQGSKHIFLINVGLDAQRKSYIVDLNDPIPIKLMTQQREDIITEKFSKSKEEKPKLV 419 Query: 559 AFINA 563 +N Sbjct: 420 TLLNG 424 >gi|254462365|ref|ZP_05075781.1| type I site-specific deoxyribonuclease [Rhodobacterales bacterium HTCC2083] gi|206678954|gb|EDZ43441.1| type I site-specific deoxyribonuclease [Rhodobacteraceae bacterium HTCC2083] Length = 697 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 57/353 (16%), Positives = 91/353 (25%), Gaps = 107/353 (30%) Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + + V +E + R F TPR +V +L P Sbjct: 237 YNLSDTSEDVKGVAFERFLGR---TFRGEIGQFFTPRTIVEFMVHML----------DPQ 283 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVAD----------------------------------C 230 + DP G+GGFL V + Sbjct: 284 EGEIVCDPASGSGGFLIRVFEIVRESILADADKQYNRFKEEIEADKSLAEEERAKRLKAK 343 Query: 231 GSHHKIPPILV-------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 + +G + M++ Sbjct: 344 YEDIRSNLDQSVEGSRLWKLSNRCIYGTDANDRMARTSKMNMIMHGDGHGGVHHHDGF-- 401 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE------------HKNGELGR-- 323 L+ + RF L+NPPFG E + E + GEL R Sbjct: 402 ----LNVNGIFEGRFDIILTNPPFGANVEPSDKILPSEIEVSPAAERRYLAEYGELYRES 457 Query: 324 ---------------FGPGLPKISD--GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 F + S +LF+ + L+ GGR IVL Sbjct: 458 QDRVKAHVNKPIASMFKLPATEKSKIKTELLFIERCLDLLKP----GGRMGIVLPEGIFN 513 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEE 417 N +R + + + A+V+LP + F + + L L +EE Sbjct: 514 NPSLT----RVREFTEDRAFLLAVVSLPAETFVSSGASVKCSLLFLKKFTSEE 562 >gi|54020633|ref|YP_116154.1| hypothetical protein mhp646 [Mycoplasma hyopneumoniae 232] gi|53987806|gb|AAV28007.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 529 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 64/439 (14%), Positives = 132/439 (30%), Gaps = 95/439 (21%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 N + + R++ S ++ + TP + L L+ + DPTCG+ Sbjct: 2 NAFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGS 52 Query: 217 GGFLTDA--------MNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVA 257 G FLT+A + + + G E + Sbjct: 53 GTFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQVCKDIKSNKLIGIEFNEFNATLAGI 112 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 ML+ D S NI Q + ++ L NPPF +K Sbjct: 113 NMLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES----------- 154 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + F+ L+ G+ A ++ S L + E Sbjct: 155 -----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLK 193 Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 + +++ + I++LP D+F + T + +L E+ + K+Q Sbjct: 194 KIFMMAK--VSHIISLPRDVFQPNAGVNTSIIVLEKYSQEKIK-KIQ------------K 238 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSR----MLDYRTFGYRRIKVLRPLRMSFILDK 492 K + I + + L + + F F + ++ + L+ F + Sbjct: 239 LASKNKEIEEHTQNIFL---IDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQ 295 Query: 493 T--GLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPYG-WAESFVKESIKSNEAKT 547 R + ++++ + + + + K M + K N +K Sbjct: 296 ALKRNLRFDEELSFERFNTNRTFNIKESVFKKYMKENFASKVLSGIENQVILKKKNLSKY 355 Query: 548 LKVKASKSFIVAFINAFGR 566 +K I ++ + Sbjct: 356 KNIKFKFFAIDKILDFISK 374 >gi|229491839|ref|ZP_04385660.1| type II restriction-modification system DNA adenine-specific methylase [Rhodococcus erythropolis SK121] gi|229321520|gb|EEN87320.1| type II restriction-modification system DNA adenine-specific methylase [Rhodococcus erythropolis SK121] Length = 589 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 84/252 (33%), Gaps = 34/252 (13%) Query: 183 VVHLATALL--LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + + +LL + + DP C G L + D + Sbjct: 112 LAQVMVSLLPEWIAPHNPVASDDANVPIVLDPACAGGTVLAAVADLFGD---------RV 162 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSN 298 GQ+++ E A A +L+R D R D +Q G + + F + Sbjct: 163 ALVGQDIDEE--AASEAALLLRGRPDDVRYD----VQSGDSFLDNRFEKYLGEAAAVVCE 216 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PP G+ + R+ G+P + + ++ H L GG A + Sbjct: 217 PPLGQSRWPMD-------ELATDPRWEFGIPSARESELAWVQHCYAHLRP----GGVAVV 265 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 + S IR L+ ++ ++ALP+ L + Y+W+L Sbjct: 266 M----VSMRTCMQSSGQHIRAALVRAGVLRDVIALPSGLGSLPDTDLYVWVLQKPIGHPE 321 Query: 419 RGKVQLINATDL 430 V++ + + L Sbjct: 322 FAPVRMTDLSGL 333 >gi|290956158|ref|YP_003487340.1| N-methyltransferase [Streptomyces scabiei 87.22] gi|260645684|emb|CBG68775.1| putative N-methyltransferase [Streptomyces scabiei 87.22] Length = 539 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 34/222 (15%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 TL+DP CG G L + +GQE + + L +D Sbjct: 158 TLFDPACGIGTLLLAV-----------GPDRGPLRYGQESDARSACFAQ-------LRAD 199 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + +I G +L DL+ + + +PP G D + R+ G Sbjct: 200 LTGRVGVDIGTGDSLRGDLWADVKADLVVCDPPVG-------DTDWGREELLLDSRWEFG 252 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 P ++G + +L H GGR +V+ +S + IR L+ ++ Sbjct: 253 TPSRAEGELAWLQHAYAHTSP----GGRVLMVMPASVAYRKAGR----RIRAELVRRGIL 304 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINAT 428 + ALP + +LW L +T + V++++ T Sbjct: 305 TQVTALPPGTASSHALPVHLWHLRRPRTLGDAVTSVRMVDLT 346 >gi|303327178|ref|ZP_07357620.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] gi|302863166|gb|EFL86098.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] Length = 737 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 96/317 (30%), Gaps = 79/317 (24%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL----LDPDDALFKESP-GMIR 207 ++ +E ++R S + + T ++V + L P I Sbjct: 265 DIIGAFFEEILR---SGFKQDRGMYFTHDNLVRFMVEAVGLSTLTEVVWKKSNHPDNRIP 321 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------------PILVPHG 244 + DP CG+G FL AMN + + + +G Sbjct: 322 YIIDPACGSGTFLLHAMNTITNTIKKSEEKLVIDHDSEQFYRARLSNEQPNYWAENFIYG 381 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-----TLSKD-------------- 285 + + M++ D S +I + +L D Sbjct: 382 FDPKFIMAITAKVNMVLHG-------DGSAHIYKEDAFKSFSLYNDVRLRPCSDSQRSVP 434 Query: 286 -----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 + F +SNPPFG + + P LF+ Sbjct: 435 RANYSQDVCETFDVVISNPPFGITLPIESQRTLAKTFLLSNS-----TPSEG----LFIE 485 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L+ GR A+VL S L ++RR++ I++IV+LP ++F Sbjct: 486 RCFQLLKQK----GRLALVLPESLLN----AKEMVDVRRFIFRFFNIKSIVSLPRNIFID 537 Query: 401 TNIATYLWILSNRKTEE 417 T T L + EE Sbjct: 538 TPTLTSLLFAQKKTAEE 554 >gi|88706060|ref|ZP_01103768.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71] gi|88699774|gb|EAQ96885.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71] Length = 115 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + +LA IW A+ L GDF+ + +G+VILPF +LRRLEC LE ++ V + Sbjct: 11 QNDNNLAADIWALADLLRGDFRQSQYGRVILPFAILRRLECVLEGSKVNVLAQVDENK 68 >gi|315924179|ref|ZP_07920405.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622581|gb|EFV02536.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 655 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 38/243 (15%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + Y+ LI + + F TP D+ L + L D R + DP C Sbjct: 108 LGDYYQWLIPK---TERQTRGIFYTPSDLAELMASHLAD------------ARRVLDPAC 152 Query: 215 GTGGFLTDAMNH------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 G G L+ + H+ G +++P + + ++ E Sbjct: 153 GAGSLLSAVYDFQMARCMDESQRDRHRTLLKDDLWGMDMDPAAVWLTRCRLALKSNEY-- 210 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 +NI G L D KRF + NPP+ + + R+ Sbjct: 211 --VYPRNILTGDALFSDKIATKRFDGVIVNPPYMGHRRMPFKRMAALRE-----RYSAVY 263 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 D + F L+ A+ L + + A +GE +RR+L++ +E Sbjct: 264 GDKGDLAYCFFALAHRVLKPKG-----CAVFL--TSRYFMEAQNGE-PLRRFLMQRMHVE 315 Query: 389 AIV 391 ++ Sbjct: 316 TLI 318 >gi|167039870|ref|YP_001662855.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514] gi|300915312|ref|ZP_07132626.1| type I restriction-modification system M subunit [Thermoanaerobacter sp. X561] gi|166854110|gb|ABY92519.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514] gi|300888588|gb|EFK83736.1| type I restriction-modification system M subunit [Thermoanaerobacter sp. X561] Length = 69 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 4 FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56 + S+ NFIW A+D L + + VILP T++RRL+ LE T+ AV Sbjct: 2 DNQTYNSIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEETKPAVL 55 >gi|312126614|ref|YP_003991488.1| N-6 DNA methylase [Caldicellulosiruptor hydrothermalis 108] gi|311776633|gb|ADQ06119.1| N-6 DNA methylase [Caldicellulosiruptor hydrothermalis 108] Length = 911 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 84/523 (16%), Positives = 152/523 (29%), Gaps = 103/523 (19%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSG 142 L+ + L+ + + K I E F+ L+ + Sbjct: 279 PAELAKRLEDKYKIALKDLLNYDEEKIKEIPLIERDKFTYE--------KLFYAVEKLQE 330 Query: 143 IELHPDTVP--DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA--L 198 I L + + V+ +E +++ E + + T +++V L A Sbjct: 331 ISLTENVHSKEEDVLGLFFESILQN---EFKQSKGQYFTHKNIVRFLIYALELDKLAIYK 387 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------------ADCGSHHKIPPILV 241 ++ + DP G+G FL +AM + + + P Sbjct: 388 LNQTYPHFPYIIDPAAGSGTFLIEAMKIITKEVLKNKDKLKLTRALEEKIKDLEDPNRKH 447 Query: 242 ------PHGQELEPETHAVCVAGMLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGK-- 290 +G E M++ + L G + GK Sbjct: 448 HWAEDYIYGIEPNTRLGLAAKLNMILHGDGNMNIFIEDGLMPFKINGKAFYTRKWKGKDV 507 Query: 291 ------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 RF +SNPPF K E + Sbjct: 508 GLLAESEETNIYPKPINGRFDVVMSNPPFSIKIEAMRSYRHIRDTFVFYD--------KK 559 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + LF+ L GR +VL S IR +L + I+AI++ Sbjct: 560 NSENLFVERWFQLLAPK----GRLGVVLPESVFDTKEN----LYIRNFLYKYFKIKAIIS 611 Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 LP + F T+ L I + EE + + + + + +RN + I + Sbjct: 612 LPKEAFEPYTSTKVSLLIAERKTDEEVKAWEDKWREYANEYNKLRNSKLIKFFIEN---D 668 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG-------------LAR 497 +ILD + + Y ++ V L + + + Sbjct: 669 KILDSFRKLLDN------HNIEIDYSKVLVHDLLDDNLKNEIEAKIPQKNKNKFKDLVEE 722 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540 +E+ KL L +ILK ++Q YP KE + Sbjct: 723 IESFKNKYKLDELDTEENKEILKRFLKQFYPQEQEFKSFKELL 765 >gi|319956396|ref|YP_004167659.1| n-6 DNA methylase [Nitratifractor salsuginis DSM 16511] gi|319418800|gb|ADV45910.1| N-6 DNA methylase [Nitratifractor salsuginis DSM 16511] Length = 676 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 129/376 (34%), Gaps = 83/376 (22%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 TL +T N+ + S K +F ++ G+ YKI Sbjct: 293 RTLSNTLLTENINKPVDGESQ-LKRVFSKI--------VDDLGIYYKI------------ 331 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + G + + +TP + +L L D+ Sbjct: 332 GLTTDFTGKLFNEMYGWLGFSQDKLNDVVLTPSYIANLLVKLARVNKDS----------Y 381 Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257 ++D G+ G L AMN + + G E+ + + + Sbjct: 382 VWDFATGSAGLLVAAMNEMINDARNTIASPEELAHKEAKIKAEQLLGLEVLSNIYMLAIL 441 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M++ D S NI +L+ D ++ Y +N F Sbjct: 442 NMILMG-------DGSSNILNEDSLTFDG----KYGYGKTNERFPADA------------ 478 Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 F P ++G+ M+F+ N + G AAI++ S G + E Sbjct: 479 ------FILNPPYSAEGNGMVFVEKALNMMNK-----GYAAIIIQGSA---GSGKAKEIN 524 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 R +L+ + A + +P+DLF +++ TY+++ + + +V+ I+ ++ + Sbjct: 525 KR--ILKKHTLIASIKMPSDLFIGKSSVQTYIYVFRVNEAHHKDERVKFIDFSNDGYTRS 582 Query: 436 NEGKKRRIINDDQRRQ 451 N + + I D R + Sbjct: 583 NRKRAKNNIKDTDRAK 598 >gi|332829740|gb|EGK02386.1| hypothetical protein HMPREF9455_01656 [Dysgonomonas gadei ATCC BAA-286] Length = 885 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 93/642 (14%), Positives = 179/642 (27%), Gaps = 121/642 (18%) Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPTRSAVREKYLAFGGSNIDLES 71 + +D+ + ++ AL+ +Y F S ++ Sbjct: 125 DSFRDTL-SSDY--------FFKYIDSQSIRANLPALDDELINTISRYKRFIYSELN-GR 174 Query: 72 FVKVAGYSFYNTSEYS----------------LSTLGSTNTRNNLESYIASFSDNAK--- 112 +F+N ++ L +L S + ++ DN Sbjct: 175 ISNEEISNFFNAIIFTRAFEDSREIDGSEQVLLKSLWSEKIQ--FSDILSLSFDNLDIKS 232 Query: 113 ---AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-----DRVMSNIYEHLIR 164 I D S I +L+K L I +F P +S IYE + Sbjct: 233 YPDQIINK-DLFSNINKLDK-NTLNNIFTDFYKSNRTPYKYDFSIISKHALSRIYEKYVS 290 Query: 165 RFG-------------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 EV++ + + TP+ + + + + + Sbjct: 291 ILNIKETEIVQYNLFNNTPNPYEEVNKSSGSYYTPQFIARFFSRYIEKVNPNILNGD--- 347 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LIRRL 264 + +P G+G FL + ++ D S K G + + L+ + Sbjct: 348 -LKILEPAVGSGIFLRTLVENITDKRSIQKAFSN--LTGIDKNSTACDAAKLSLTLLHLV 404 Query: 265 ESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + + NI ++ + +SNPPF + E +N Sbjct: 405 ITGELPKENLNIINQDSINYFTNNKNFKCDVVISNPPFIS-----YGLMSNEDRNKVKSF 459 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 D + F+ + L N GG VL ++ L A IR+ L Sbjct: 460 LAEYSYNKYDLYLSFVKIGIDSL----NEGGIGLFVLPNTFLVTDSA----KLIRKHLAN 511 Query: 384 NDLIEAIVALPT---DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI---RNE 437 I +V L + +F + L I +K E+ +I + Sbjct: 512 ECNILCLVDLSSVDYKIFEDAGVYPILLIFQKKKKREKITPSAIIATIKDYVGKALTDIL 571 Query: 438 GKKRRIINDDQRRQILDIYVSRE------------NGKFSRMLDYRTFGYRRIKVLRPLR 485 +K I + ++E K S+ F R L Sbjct: 572 AEKMSNNMSYNIFGISQEFFNKEKWHLLTPAESNLEIKLSKYKKLEDFLETRTGFASGLI 631 Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545 +FI+ K+ + + E +I L + +++ Y + S Sbjct: 632 EAFIIPKSKIPKKEEEIYIPYLGDREMMKF-----SIIEDSQEYFFYPYLKNGSKIDEVT 686 Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE---WIPD 584 + + + F N + G W P+ Sbjct: 687 LKHRFPFTYKRLYQFYNTLSERSEV------KKGNMQWWEPN 722 >gi|323439091|gb|EGA96821.1| hypothetical protein SAO11_2090 [Staphylococcus aureus O11] Length = 491 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 101/306 (33%), Gaps = 58/306 (18%) Query: 92 GSTNTRNNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK--AGLLYKICKNFS-GI 143 N ++ Y+ + + + I E F F +L + + L K FS + Sbjct: 232 DGDKIYNAVQMYLKQ-NADIRPAKNGEILESFMFIKNDLKLNRIHSQLNMTPLKYFSVKL 290 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + ++ + Y + ++G +TPR + +L L+ Sbjct: 291 KNKFVHNDMDILGSFYGEFV-KYGGNDGNALGIVLTPRHITNLMCELISINHTDF----- 344 Query: 204 GMIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 + DP CG+GGFL AMN +AD K HG EL M+ Sbjct: 345 -----VLDPCCGSGGFLVTAMNKMFNLADTKEEIKSIKQNQIHGIELTQSLFTTATTNMI 399 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +R D N+++ D + + + L NPP+ + K+ + + Sbjct: 400 LRG-------DGKSNLRRDDVFHVDKEYYKDKINKILLNPPYSQAKTKNLSHLSEIS--- 449 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 F+ ++ GG+ A ++ S + + +R Sbjct: 450 ------------------FIKESLEYMKT----GGKLAAIIPQSTMI--GKTKNDKNYKR 485 Query: 380 WLLEND 385 +LE Sbjct: 486 EILEKH 491 >gi|42779915|ref|NP_977162.1| type I restriction-modification system, M subunit, putative [Bacillus cereus ATCC 10987] gi|42735833|gb|AAS39770.1| type I restriction-modification system, M subunit, putative [Bacillus cereus ATCC 10987] Length = 613 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 85/211 (40%), Gaps = 15/211 (7%) Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 +T ++ V M+ + ++ I+QG L K F + + + Sbjct: 175 DTMSLDVFDMMQLGAYAYEISNIV--IKQGDVLKKPTFILEEGNLQQFDCVISIPAMGSI 232 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 EH E GRF G D ++ ++ H + GRA I+ LF G Sbjct: 233 SPNVGEH--DEFGRFLFGRSSKRDATLDYVSHALASTKT----NGRAVILTLGGSLFRGG 286 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 E ++R + ++ +E ++ + + T +A Y L+ ++ + +++++A++ Sbjct: 287 V---EEKVRTAIAKSRQVEGVIKFASSILLNTAVAPYALFLNRNQSLDVSPSIRMVDASE 343 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + +++ ++ +IL +Y S E Sbjct: 344 IIGVQGRA----KVLENEHIERILSLYRSSE 370 >gi|323440114|gb|EGA97829.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11] Length = 125 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 33/127 (25%), Gaps = 20/127 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123 E++ L + FS + I E DF Sbjct: 69 AWADEAYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 110 Query: 124 IARLEKA 130 I L A Sbjct: 111 IEHLATA 117 >gi|254362802|ref|ZP_04978883.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica PHL213] gi|153094431|gb|EDN75279.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica PHL213] Length = 667 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 102/312 (32%), Gaps = 69/312 (22%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 E+ V+ +E+LI + + TPR V+ + +L P Sbjct: 298 EVKLFNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------DP 344 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---------LEPETHAV 254 T+ D G+ GF ++ HV + + E ++ + A+ Sbjct: 345 KPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPEQTDYVKEKVFAI 404 Query: 255 ---CVAGMLIRRLESDPRRDLSKNIQQGSTL-------------SKDLF----------- 287 A + R L D N+ +TL D++ Sbjct: 405 DFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEDFTKEEEWNDVYGEGWKKLRKLR 463 Query: 288 ------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +F ++NPPF ++ + E G+ + + +LF+ Sbjct: 464 KTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQSKVGR----DILFIER 519 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-R 400 + L+ GGR AIVL N S + IR ++ E I A+V L ++F Sbjct: 520 NLDFLKD----GGRMAIVLPQGRFNN----SSDKYIRDFIAERCRILAVVGLHGNVFKPH 571 Query: 401 TNIATYLWILSN 412 T T + + Sbjct: 572 TGTKTSVLFVQK 583 >gi|315932183|gb|EFV11126.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 687 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98 + ++ +++ L + ++ E F + L Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGVRDRTK 237 Query: 99 --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147 +Y S S+ + I + FD + EK L L + ++L Sbjct: 238 SLEFRNYGGSDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + V+ + +E+L+ + + TPR V+ + +L +P Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342 Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249 ++ D G+ GF +V + S + G + + Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402 Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285 ++ V ++ ++ S + + KD Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKN 462 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F ++NPPF ++ + E E G+ + + +LF+ + Sbjct: 463 QNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404 L+ GGR AIVL N S + IR ++ + I A+V L ++F T Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570 Query: 405 TYLWILSN 412 T + L Sbjct: 571 TSVLFLQK 578 >gi|157415308|ref|YP_001482564.1| hypothetical protein C8J_0988 [Campylobacter jejuni subsp. jejuni 81116] gi|157386272|gb|ABV52587.1| hypothetical protein C8J_0988 [Campylobacter jejuni subsp. jejuni 81116] gi|307747951|gb|ADN91221.1| Type I Restriction Enzyme [Campylobacter jejuni subsp. jejuni M1] Length = 687 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98 + ++ +++ L + ++ E F + L Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGVRDRTK 237 Query: 99 --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147 +Y S S+ + I + FD + EK L L + ++L Sbjct: 238 SLEFRNYGGSDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + V+ + +E+L+ + + TPR V+ + +L +P Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342 Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249 ++ D G+ GF +V + S + G + + Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402 Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285 ++ V ++ ++ S + + KD Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKN 462 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F ++NPPF ++ + E E G+ + + +LF+ + Sbjct: 463 QNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404 L+ GGR AIVL N S + IR ++ + I A+V L ++F T Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570 Query: 405 TYLWILSN 412 T + L Sbjct: 571 TSVLFLQK 578 >gi|153951579|ref|YP_001397840.1| DNA methylase-type I restriction-modification system [Campylobacter jejuni subsp. doylei 269.97] gi|152939025|gb|ABS43766.1| dna methylase-type I restriction-modification system [Campylobacter jejuni subsp. doylei 269.97] Length = 687 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 64/428 (14%), Positives = 129/428 (30%), Gaps = 86/428 (20%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98 + ++ +++ L + ++ E F + L Sbjct: 178 FDDLIKEDILKNQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237 Query: 99 --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147 +Y S S+ + I + FD + EK L L + ++L Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + V+ + +E+L+ + + TPR V+ + +L +P Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342 Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249 ++ D G+ GF +V + + G + + Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERSIEASHLFTAQEKIPECQDYVKEKVFGIDFDE 402 Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285 ++ V ++ ++ S + + KD Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATKN 462 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F ++NPPF ++ + E E G+ + + +LF+ + Sbjct: 463 QNRDFNFDILMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404 L GGR AIVL N S + IR ++ + I A+V L ++F T Sbjct: 519 LRP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570 Query: 405 TYLWILSN 412 T + L Sbjct: 571 TSVLFLQK 578 >gi|91216828|ref|ZP_01253792.1| type II restriction-modification enzyme [Psychroflexus torquis ATCC 700755] gi|91184989|gb|EAS71368.1| type II restriction-modification enzyme [Psychroflexus torquis ATCC 700755] Length = 1020 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 75/451 (16%), Positives = 138/451 (30%), Gaps = 76/451 (16%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 ++ RL + E +A +++A S+ T N Sbjct: 298 VIYRLSDLHKRGMKDYMELDVADVSEEDFDRELLRIA-------SQIDGETQEIKNMFKQ 350 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156 L Y +F F I E A ++ ++ K ++ + + Sbjct: 351 LRLYKN----------NEFAFKEVINERTFYENAEIVKEVVKLLETFKIKYEHKQKF-LG 399 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD---DALFKESPGMIRTLYDPT 213 + +E L+ + + + F TP + + + + + + + D Sbjct: 400 DFFERLL---NIGIKQESGQFFTPTPITTFICNSIPFEKVIENKINLKDNNFLPYVIDYA 456 Query: 214 CGTGGFLTDAMNHVADCGSHHKIP------PILVPHGQEL-----EPETHAVCVAGMLIR 262 CG+G FL DAM+ + K + + + + + L + Sbjct: 457 CGSGHFLNDAMDRIDKILQSIKNEEFRTNTQRDNFYAWKRAYKWAKEFVYGIEKDYRLAK 516 Query: 263 R--LESDPRRDLSKNIQQGSTL-----------SKDLFTGKR---FHYCLSNPPFGKKWE 306 + D I G L + K+ F ++NPPF + Sbjct: 517 TTKVACFLNGDGEAKILYGDGLAPFNSKLYYGKLNNETGDKQNPVFDAIVANPPFSVESF 576 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + E+ G + K D LF+ + L+ G A I+L S+ L Sbjct: 577 R----MVLENGKGTFDLYDQITDKSDDIECLFIERTSQLLKE----NGFAGIILPSTILL 628 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLI 425 N + R+ LLEN I + T F T + R K E + V L Sbjct: 629 NRGIHQ---KARKLLLENFKICGLCEFGTKAFTYAGQPTIALFIKKREKVEIDKINVLLS 685 Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 + KK + D + I+ Y Sbjct: 686 D----------FKKKETDFSFDGIKNIISQY 706 >gi|222444446|ref|ZP_03606961.1| hypothetical protein METSMIALI_00057 [Methanobrevibacter smithii DSM 2375] gi|222434011|gb|EEE41176.1| hypothetical protein METSMIALI_00057 [Methanobrevibacter smithii DSM 2375] Length = 456 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 83/524 (15%), Positives = 158/524 (30%), Gaps = 94/524 (17%) Query: 1 MTEFTGSAASLANFIWKNAEDLW---------GDFKHTDFGKVILPFTLLRRLECALEPT 51 M E + N I +A + G I + L + Sbjct: 1 MQENNHKQIEITNSI-NSANRMLVASGFHERSGAMTQ------IACLLGYKYLSNNISNN 53 Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 + + E + G L LG N + I + SD Sbjct: 54 SEDIGYELNE----EFRYEKLLINKGEVI------ELLKLGIEQITQN-NNSIQA-SDVF 101 Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 +F+ DF+ R K I + + I +I+ ++ Sbjct: 102 FDLFDMIDFN----RFNKNEFWLTFIDAVEKIC----SETTATIGEIMIFMIKYLSNDKR 153 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +L + L + + +YDP G L N + Sbjct: 154 RDF-------------IFMLTEDSIKLLMANQKDVTNIYDPFADDGTLLAQIGNVINVEN 200 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 +GQ E + +L + +I + + + Sbjct: 201 ----------YYGQHPNREKCIMAKMTLLTNDINYKNIFIKCNDII------EPIPWNVK 244 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPP 350 F ++ PFG K N RFG ++S+ S L + + LE Sbjct: 245 FDLGVTISPFGIKGG---------RFNEMDVRFGNFAHKRLSEISYL--LDMFYNLEDD- 292 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G I++ + L S +I ++L++N+ I I+ LP LF + T L I+ Sbjct: 293 ---GTIRIIVPDAVL----RLSSNKKIFQYLVDNEFISTIIGLPGGLFGANGVLTALLII 345 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 KT + +G + +N ++ R+ GKKR + + + I ++E + + Sbjct: 346 --NKTPKNKG-IFYLNLRNV--KNRSLGKKR-ATSIEDIDNYIKILSNKEELELTSNTAT 399 Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 L ++ +D L ++ + T + + + Sbjct: 400 IEDIKEN---DYNLAINRYVDSEKLEEIDIEQTIANIKAIKEEL 440 >gi|305431928|ref|ZP_07401095.1| DNA methylase-type I restriction-modification system [Campylobacter coli JV20] gi|304445012|gb|EFM37658.1| DNA methylase-type I restriction-modification system [Campylobacter coli JV20] Length = 687 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 130/428 (30%), Gaps = 86/428 (20%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98 + ++ +++ L + ++ E F + L Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237 Query: 99 --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147 +Y S S+ + I + FD + EK L L + ++L Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + V+ + +E+L+ + + TPR V+ + +L +P Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342 Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249 ++ D G+ GF +V + S + G + + Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402 Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285 ++ V ++ ++ S + + KD Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATKN 462 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F ++NPPF ++ + E E G+ + + +LF+ + Sbjct: 463 QNRDFNFDILMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404 L GGR AIVL N S + IR ++ + I A+V L ++F T Sbjct: 519 LRP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570 Query: 405 TYLWILSN 412 T + L Sbjct: 571 TSVLFLQK 578 >gi|282866313|ref|ZP_06275359.1| N-6 DNA methylase [Streptomyces sp. ACTE] gi|282558899|gb|EFB64455.1| N-6 DNA methylase [Streptomyces sp. ACTE] Length = 717 Score = 79.6 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 30/210 (14%) Query: 207 RTLYDPTCGTGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 RT+ DP GTG L A + + + L Sbjct: 215 RTVLDPAAGTGALLRAVGGPAALYAQEADAGLAALTALRLALHSENASGTP--------- 265 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 S + ++ G TL D F L +PPF ++ + + Sbjct: 266 --SSSGAARGTITVRTGDTLRADAFPRLAADAVLCHPPFNERNWGHE-------ELAYDP 316 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 R+ G P ++ + ++ H ++L GG A +++ + SG +R LL Sbjct: 317 RWEYGFPARTESELAWVQHALSRLRE----GGTAVLLMPPAAASR---RSG-RRVRADLL 368 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSN 412 + A++ALP I +LW+L Sbjct: 369 RRGALRAVIALPAGAAPPYGIPLHLWVLRK 398 >gi|148927590|ref|ZP_01811061.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1] gi|147887066|gb|EDK72563.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1] Length = 330 Score = 79.2 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 18/158 (11%) Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S+ + F+ H+ ++L++ G+AA+++ + LF G AG IR+ LL+ I Sbjct: 156 TTTSNKQLNFVQHICSQLKVD----GKAAVIVPDNVLFEGGAG---ETIRKKLLQTTEIH 208 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK--KRRIIND 446 I+ LPT +F+ + + NR + +VQ + ++ N+ K + + + Sbjct: 209 TILRLPTGIFYANGVKANVIFFDNRPASK---EVQTKD-VWVYDMRTNQHFTLKEKKLAN 264 Query: 447 DQRRQILDIY-----VSRENGKFSRMLDYRTFGYRRIK 479 + Y R + + Y R Sbjct: 265 ADLADFIKCYNPDNRHQRSETERFKKFTYDEVVTRDKT 302 >gi|315196848|gb|EFU27192.1| type I restriction-modification system, methyltransferase subunit [Staphylococcus aureus subsp. aureus CGS01] Length = 136 Score = 79.2 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123 E + L + FS + I E DF Sbjct: 69 AWADEEYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 110 Query: 124 IARLEKA 130 I L A Sbjct: 111 IEHLATA 117 >gi|149919925|ref|ZP_01908400.1| type II restriction-modification enzyme [Plesiocystis pacifica SIR-1] gi|149819198|gb|EDM78632.1| type II restriction-modification enzyme [Plesiocystis pacifica SIR-1] Length = 777 Score = 79.2 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 106/342 (30%), Gaps = 62/342 (18%) Query: 153 RVMSNIYEH-LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + ++E L+RR A F TP + + PG +R + D Sbjct: 125 DTLGQLFEGGLVRR----ARRDAGVFFTPASLADFVVQ----ETLGRSQRDPGSLR-VLD 175 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG G FL A V G + E AV + + ++ R + Sbjct: 176 PACGGGAFLLAAHRAVRRATGKEGALAN--FFGVDKNGEALAVARRALWLEHAKAQGRLE 233 Query: 272 LSK-----NIQQGSTLSKDLFTG----------------------KRFHYCLSNPPFGK- 303 + N++QG ++ D RF L NPPF + Sbjct: 234 PAPAQLFTNLRQGDSVVDDPQVDPWAFDWSTGRRVGASAGASTWPARFDLILGNPPFVRH 293 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + A +E + G G+ LF+ + + GGR V+S+ Sbjct: 294 EQLGPFKAHWRERFSTYEG-----------GADLFV-YFIERGLELLAPGGRLGFVVSNK 341 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGKV 422 L G A + +R L + +E +V +F + + + V Sbjct: 342 WLRGGYA----ARLRERLARDCTVELLVDHGHAPVFAGADAFPCVLCVRKG-PPAPTHAV 396 Query: 423 QLI----NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 Q+I +A R+ + R ++ R Sbjct: 397 QVIQGGRSAERFAVPQRSLAAAPWSLEPPAVRALVAALRERA 438 >gi|270668326|ref|ZP_06222521.1| putative type I restriction-modification system, M subunit [Haemophilus influenzae HK1212] gi|270316699|gb|EFA28484.1| putative type I restriction-modification system, M subunit [Haemophilus influenzae HK1212] Length = 149 Score = 79.2 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP 147 ++E+ F + + I F DF +T RL +K L + K + ++ Sbjct: 20 KQIFTDIENSATGF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGK 78 Query: 148 DTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + YE+LI + + + +F TP+ V L + + ++ K Sbjct: 79 FEDNHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK------ 132 Query: 207 RTLYDPTCGTGGFLTDAMN 225 +YDP G+G L A Sbjct: 133 --IYDPAAGSGSLLLQAKK 149 >gi|322513898|ref|ZP_08066976.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976] gi|322120267|gb|EFX92217.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976] Length = 595 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 67/384 (17%), Positives = 121/384 (31%), Gaps = 76/384 (19%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135 F N +L+ + R NL+ + +S+ + E+ D Sbjct: 192 EPFRNKIYDTLAKSLQEHRRQNLKIDILLEVYSEIRMNVVENQD---------DINSFID 242 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + S + + VM + R + + TP + L+ Sbjct: 243 SVIDISHSVNSDNWNGEDVMGIFFNEFNRY---KKKSESGQVFTPEHITSFMYDLIGVSH 299 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCGS----HHKIPPILVPHGQELEPE 250 + + D TCG+GGFL AM N + + G + G E + E Sbjct: 300 ND----------KVLDATCGSGGFLVKAMANMIKEVGGINTIEAENIKKYQLFGIEFDRE 349 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 A+ A MLI +D N++Q T + + S P Sbjct: 350 IFALACANMLIH-------KDGKTNLEQLDT-----RETQACEWIKSKP----------- 386 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + K N R G K + + G + A +L L Sbjct: 387 -ITKVLMNTPYER-KYGCKK-----------IVENVLENVPIGTKCAFILPDKKL----- 428 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 E + LL+ +E+I+ LP LF + T +++ K ++ R D Sbjct: 429 ---EKDKMGGLLKKHTLESIIKLPESLF-DAGVTTSVFVFETGKPQKERKIFACYMEDDG 484 Query: 431 WTSIRNEGKK--RRIINDDQRRQI 452 ++N+G+ + + +R + Sbjct: 485 LERVKNQGRHDIKNRWAEIERYWL 508 >gi|320143299|gb|EFW35083.1| hypothetical protein HMPREF9529_01245 [Staphylococcus aureus subsp. aureus MRSA177] Length = 135 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123 E + L + FS + I E DF Sbjct: 69 AWADEEYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 110 Query: 124 IARLEKA 130 I L A Sbjct: 111 IEHLATA 117 >gi|270685245|ref|ZP_06222844.1| putative type I restriction-modification system, M subunit [Haemophilus influenzae HK1212] gi|270316187|gb|EFA28160.1| putative type I restriction-modification system, M subunit [Haemophilus influenzae HK1212] Length = 112 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 20/129 (15%) Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHK 317 M + + D +I G+TL + F + F +SNPP+ KW D Sbjct: 1 MFLHNINYDKF-----DIALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT----- 50 Query: 318 NGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 RF P L S F++H + L + GRAAIV + G A E Sbjct: 51 LINDERFAPAGVLAPKSKADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQ 103 Query: 376 EIRRWLLEN 384 +IR++L++N Sbjct: 104 KIRQYLVDN 112 >gi|258452977|ref|ZP_05700970.1| type I restriction-modification system, M subunit [Staphylococcus aureus A5948] gi|257859187|gb|EEV82042.1| type I restriction-modification system, M subunit [Staphylococcus aureus A5948] gi|315198094|gb|EFU28426.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus CGS01] Length = 136 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123 E + L + FS + I E DF Sbjct: 69 AWADEEYR---------------EDLKAELIDQVGYFIEPEDLFSAMIREI-ETQDFD-- 110 Query: 124 IARLEKA 130 I L A Sbjct: 111 IEHLATA 117 >gi|167945633|ref|ZP_02532707.1| type I restriction-modification system, M subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 91 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L GR A++ S S L+ G + +IR+ L+E++L++A+V LP L T+I Sbjct: 1 MLASLNQDHGRMAVITSLSVLYRGGSD---GDIRQRLIEHNLLDAVVVLPDRLLPNTSIP 57 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIR 435 + I K ++ V I+A++ + R Sbjct: 58 IAVLIFRMDKPDDS---VLFIDASNDYQFTR 85 >gi|229195089|ref|ZP_04321864.1| Type I restriction-modification system, M subunit [Bacillus cereus m1293] gi|228588318|gb|EEK46361.1| Type I restriction-modification system, M subunit [Bacillus cereus m1293] Length = 616 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 86/212 (40%), Gaps = 15/212 (7%) Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 +T ++ V M+ + ++ I+QG L K F + + + Sbjct: 178 DTMSLDVFDMMQLGAYAYEISNIV--IKQGEVLKKPTFILEEGNLQQFDCVISIPAMGSI 235 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 EH E GRF G D ++ ++ H + GRA I+ LF G Sbjct: 236 SPNVGEH--DEFGRFLFGRSSKRDATLDYVSHALASTK----ANGRAVILTLGGSLFRGG 289 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 E ++R + ++ +E ++ + + T +A Y L+ ++ + +++++A++ Sbjct: 290 V---EEKVRTAIAKSRQVEGVIKFASSILLNTAVAPYALFLNRNQSLDVSPSIRMVDASE 346 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 + +++ ++ +IL +Y S EN Sbjct: 347 IIGVQGRA----KVLENEHIERILSLYQSGEN 374 >gi|282928609|ref|ZP_06336207.1| LOW QUALITY PROTEIN: type I site-specific deoxyribonuclease subunit LldI hsdM [Staphylococcus aureus A9765] gi|282591920|gb|EFB96956.1| LOW QUALITY PROTEIN: type I site-specific deoxyribonuclease subunit LldI hsdM [Staphylococcus aureus A9765] gi|320142953|gb|EFW34747.1| hypothetical protein HMPREF9529_01597 [Staphylococcus aureus subsp. aureus MRSA177] Length = 135 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123 E + L + FS + I E DF Sbjct: 69 AWADEEYR---------------EDLKAELIDQVGYFIEPEDLFSAMIREI-ETQDFD-- 110 Query: 124 IARLEKA 130 I L A Sbjct: 111 IEHLATA 117 >gi|319940141|ref|ZP_08014494.1| type IIS restriction enzyme M protein [Streptococcus anginosus 1_2_62CV] gi|319810612|gb|EFW06942.1| type IIS restriction enzyme M protein [Streptococcus anginosus 1_2_62CV] Length = 690 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 114/341 (33%), Gaps = 61/341 (17%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 + ++ + + V ++ + R + + +TPR V L Sbjct: 319 KEIFTEVIDDLG--YFYKIGVDTDFTGKLFNIMFRWLSFAGDDQNDVVLTPRYVALLMAK 376 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPP 238 L D+ ++D G+GG L AMN + + + Sbjct: 377 LARVNKDS----------YVWDFATGSGGLLVAAMNLMLDDAKKEITSPDELREKEEKIK 426 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G E+ PE + + V M++ D S NI Q +L ++ Y N Sbjct: 427 AEQILGIEILPEIYMLAVLNMILMG-------DGSSNILQDDSL---KKFDGKYGYGKDN 476 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 F + +G M F+ + ++ GG A+I Sbjct: 477 ENFPADVFLLNPPYSE----------------TGNG-MNFVKRALSMMK-----GGYASI 514 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ S G + E + +LE++ + A + +P D+F +N+ T +++ + E Sbjct: 515 IIQDSA---GAGKAKEIN--QKILEHNTLLASIKMPMDIFIGKSNVQTSIYVFKVGEKHE 569 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + +V+ I+ + N K + N + Y Sbjct: 570 AKHRVKFIDLRNDGYKRSNRKKSKASTNLQDVDNAVGRYEE 610 >gi|114332400|ref|YP_748622.1| type I restriction-modification system [Nitrosomonas eutropha C91] gi|114309414|gb|ABI60657.1| type I restriction-modification system [Nitrosomonas eutropha C91] Length = 92 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 11 LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69 +++ IW A+D L + + VILPFT+LRRL+ LE T+ AV E+ + Sbjct: 15 ISDLIWNIADDRLRDMYVRGKYRDVILPFTVLRRLDAVLESTKQAVLERKKLLDTHKVAE 74 Query: 70 ES 71 + Sbjct: 75 QD 76 >gi|322514821|ref|ZP_08067840.1| type I site-specific deoxyribonuclease [Actinobacillus ureae ATCC 25976] gi|322119203|gb|EFX91344.1| type I site-specific deoxyribonuclease [Actinobacillus ureae ATCC 25976] Length = 741 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 67/442 (15%), Positives = 115/442 (26%), Gaps = 115/442 (26%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + + G E F++ + N ++ G + + + + + NA Sbjct: 170 KIMYERNKQKGKIFTKEEFLEQESHYEKNIRPVNVRRNGPKDDISYVTYWFDD-TKNAYK 228 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + F+ I + I + + D V +E + + Sbjct: 229 AEQLFEDDEVIK--IRRESFLAILEKL--QIYNLSKTSDDVKGVAFEKFLG---TTFRGE 281 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TPR VV T +L P + DP G+GGFL +A ++ + Sbjct: 282 LGQFFTPRSVVEFMTEIL----------DPQEGERVCDPCSGSGGFLINAFEYMRESIRQ 331 Query: 234 HKIPPILV---------------------------------------------------- 241 Sbjct: 332 DLEEEKESIKNRYFDEAYEQADEQQKANIEAKVDGLFSELNSELDLDNPNSRLYQLSHNC 391 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +G + P V M++ L+ + +RF L+NPPF Sbjct: 392 IYGTDANPRMARVSKMNMIMHGDGHGGVHHNDG------LLNINGIFEERFDVILTNPPF 445 Query: 302 GKKWEKD----------KDAVEKEHKNGELGRFGPGLPKI---------------SD--- 333 G + KD K K G + S Sbjct: 446 GSRVAKDLKLTQEDSLIDKPHYKNWKAKYENYERIGNERKLEIEENKVIVDKFEVSKFST 505 Query: 334 -GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 ++F+ L GGR IVL L NG ++R + I I + Sbjct: 506 LTEVMFIERCLKLLRK----GGRMGIVLPKGVLNNGDLQ----KVRHYFESKAKIILITS 557 Query: 393 LPTDLF--FRTNIATYLWILSN 412 +P D+F + + L Sbjct: 558 IPQDVFVASGATVKPSIVFLKR 579 >gi|332202746|gb|EGJ16815.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317] Length = 179 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 11/184 (5%) Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GGRAA+++ LF + IR+ ++EN ++A++++P+ +F ++T + Sbjct: 3 TLKPGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAI 60 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I + KV + + + KR+ I+D+ I++ + E + Sbjct: 61 LIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQR 116 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 D F + V + L +E + + + + D+ K + + Sbjct: 117 TDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEIILKKINDLEKEIQAGLA 172 Query: 528 PYGW 531 Sbjct: 173 ELEK 176 >gi|288561747|ref|YP_003429153.1| type II DNA modification (methyltransferase subunit) [Bacillus pseudofirmus OF4] gi|288548379|gb|ADC52261.1| type II DNA modification (methyltransferase subunit) [Bacillus pseudofirmus OF4] Length = 645 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 57/339 (16%), Positives = 105/339 (30%), Gaps = 57/339 (16%) Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 I F T L+ +L I K I + +M + Y +R + + Sbjct: 246 ILNQITFLETQLDLKNNNILRDILKELRDEVIPYFDTSSNYDIMGSFYSEFLR-YAGISN 304 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +TP + L T L+ ++DP G+G FL MN + Sbjct: 305 VKNGIVLTPAHITQLFTELVPI----------RPSDVIFDPAAGSGAFLIAGMNALIKKI 354 Query: 232 SHHK---------IPPILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGST 281 + G EL + + ++ ML +S S + + T Sbjct: 355 ENSNLADKQSKILNVKQKQLIGFELNSTMYTLSISNMLFRHDGKSQLYNLDSFSEEAKQT 414 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L + G + NPP+G K K PK + FL Sbjct: 415 LRRLAQDGIKPTIGFVNPPYGGKETKSDP-----------------TPK----EISFLKL 453 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-R 400 L + + ++ S F R +L ++ ++ +P DLF Sbjct: 454 LLDSVSDY------VIMIAPLSTYFKDET------TRNGILAQHTLKYVINMPADLFQPN 501 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 T + + + + + + + D + +N+G+ Sbjct: 502 AATITAISVFHVGQPQGDQETIMVDLVDDGFVLSKNKGR 540 >gi|315619743|gb|EFV00263.1| N-6 DNA Methylase family protein [Escherichia coli 3431] Length = 768 Score = 77.7 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 111/321 (34%), Gaps = 61/321 (19%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 E + + ++ + R G + + +TP V L L D+ Sbjct: 416 EYYKIGLTTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLARVNKDS------ 469 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETH 252 ++D G+ G L AMN + + G E+ + Sbjct: 470 ----YVWDFATGSAGLLVAAMNEMLIDARENIHSPNELQLKEAQIKAEQLLGLEVLSSIY 525 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + + M++ D S NI +L+ ++ + + F Sbjct: 526 MLAILNMILMG-------DGSSNILNKDSLAD---FDGKYGFGKTGEKFPADA------- 568 Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 F P + G+ M+F+ + ++ G AA+++ SS G Sbjct: 569 -----------FILNPPYSAKGNGMIFVQKALSMMDK-----GYAAVIIQSSA---GTGK 609 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430 + E + +L+ + + A + +P DLF +++ TY+++ + + V+ I+ ++ Sbjct: 610 ATEYN--KKILKENTLLASIKMPADLFIGKSSVQTYIYVFQVKIPHNAKQAVKFIDFSND 667 Query: 431 WTSIRNEGKKRRIINDDQRRQ 451 + N K R + D R + Sbjct: 668 GYARSNRKKARNNLVDADRAK 688 >gi|254415486|ref|ZP_05029246.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196177667|gb|EDX72671.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 670 Score = 77.7 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 46/226 (20%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 + TPR +V L ++ D CG+GGFL D Sbjct: 114 GGRYPTPRHIVKFMQRLAQLE---------PNNHSVADLACGSGGFLLD--------REI 156 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGK 290 V G ++ PE + A + + + G+ L + FT K Sbjct: 157 TNPSSSEVTIGIDISPEWKRLAWANTRLH--------HFTPRLINGNALQVCGSEEFTKK 208 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F L NPPFG+K + G + S+ ++ L KL Sbjct: 209 TFDRILINPPFGEKI----------DEKLAENTLGYKVSSRSETALTALA--LQKLAPA- 255 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 G+AAI++ S LF+ E ++RR L+ + +EA+++LP D Sbjct: 256 ---GKAAILVPSGLLFSNNTS--ERKLRRQLIFDYKLEAVISLPKD 296 >gi|25028882|ref|NP_738936.1| putative type I restriction-modification system methylase [Corynebacterium efficiens YS-314] gi|259507944|ref|ZP_05750844.1| type I restriction-modification system methylase [Corynebacterium efficiens YS-314] gi|23494169|dbj|BAC19136.1| putative type I restriction-modification system methylase [Corynebacterium efficiens YS-314] gi|259164439|gb|EEW48993.1| type I restriction-modification system methylase [Corynebacterium efficiens YS-314] Length = 598 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 46/342 (13%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 T++DP CG GG L N L G +++ + + + + Sbjct: 138 TVFDPACGIGGTLLRLYN----------KQQNLALIGNDIDGVAVTIAQLHAYLAGIPAT 187 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +L+ ++ R ++ PP G + ++D F Sbjct: 188 FTHS--------DSLTSEIHGELRSQTIITEPPMGMRPDRDVQQNVLARAG-----FDAA 234 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 SD LFL + L GG A ++ S++ F G + +IR+ L+ L+ Sbjct: 235 GALTSDE--LFLYMALSNLTP----GGYAYVLTSTAAGFRGASQ----QIRQELVARGLV 284 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 EA++ LP+ L + I T LW+L + + + +A+ + D+ Sbjct: 285 EAVIQLPSRLLPYSGIPTLLWVLHRP-VGDPETSLLIADASTVSDP-----------QDE 332 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 + + D+ RE +R L ++ P + L++ + R + L Sbjct: 333 IAQWLTDLRAGREIAIPARRLSLAELITNDGSIVPPALLRAELEEDEV-REDLKKAMSAL 391 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 S + L + + P + + +K+ I +N ++ Sbjct: 392 SSSVKKLRDLDLDEQIVERVPSSRSFTNLKQLIDTNAITRIR 433 >gi|327390240|gb|EGE88583.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375] Length = 179 Score = 77.3 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 11/184 (5%) Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 GGRAA+++ LF + IR+ ++EN ++A++++P+ +F ++T + Sbjct: 3 TLKPGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAI 60 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 I + KV + + + KR+ I+D+ I++ + E + Sbjct: 61 LIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQR 116 Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 D F + V + L +E + + + + D+ K + + Sbjct: 117 TDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLA 172 Query: 528 PYGW 531 Sbjct: 173 ELEK 176 >gi|67920388|ref|ZP_00513908.1| Type I restriction-modification system, M subunit [Crocosphaera watsonii WH 8501] gi|67857872|gb|EAM53111.1| Type I restriction-modification system, M subunit [Crocosphaera watsonii WH 8501] Length = 201 Score = 77.3 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 36/195 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNT 96 ++RL+ LE + K G + + G + +S L ++ Sbjct: 35 LLFIKRLDD-LELAKEK---KAKRLGKPVQNPTFLPEKQG------ARWSYFKNL--DDS 82 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-------GLLYKICKNFSGIELHPDT 149 L K + ++ ++ A LL + I + Sbjct: 83 EEMLYMVRDVAFPFIKELGGKAGETAYTRHMKDAVFLISNPALLSNVVAQIEKIPMD--- 139 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++YE+++ + + F TPR ++ L L+ P + + Sbjct: 140 -DRDTKGDLYEYMLSKIA--SAGQNGQFRTPRHIIKLMVELM----------QPSPLEIV 186 Query: 210 YDPTCGTGGFLTDAM 224 DP CGT GFL Sbjct: 187 CDPACGTAGFLVAVA 201 >gi|296277403|ref|ZP_06859910.1| type I restriction-modification system, M subunit [Staphylococcus aureus subsp. aureus MR1] Length = 110 Score = 77.3 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 29/118 (24%), Gaps = 18/118 (15%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68 Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFS 121 E + L + FS + I E DF Sbjct: 69 AWADEEYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD 110 >gi|310828858|ref|YP_003961215.1| putative DNA modification methyltransferase [Eubacterium limosum KIST612] gi|308740592|gb|ADO38252.1| putative DNA modification methyltransferase [Eubacterium limosum KIST612] Length = 672 Score = 76.9 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 63/384 (16%), Positives = 113/384 (29%), Gaps = 52/384 (13%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +L +GL+++ K F + V+ +YE + R + F TP + Sbjct: 81 KLTLSGLIWEDVKRFIEDTDSFENKNASVIGELYEECLHR---SHKKSQGIFYTPDVLAE 137 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------HKIPPI 239 +L + S + DP CG+G L+ A +++ HK Sbjct: 138 YMVSLCV---------SVVRKEKILDPACGSGSLLSAAYDYILKNTKDLEKETVHKRLLQ 188 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLS 297 G + +P V + ++ + I G L K F F + Sbjct: 189 KSLCGVDKDPLAVLVTRITLALKGEKY----CYPAGIMVGDCLDKASADFKDSAFDVVIG 244 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+ ++ E+ + D S F L+ GR Sbjct: 245 NPPY-----VGHKEIDSEYMKHLKAFYSDVYQNKGDLSYCFFKRGYELLKDK----GRLL 295 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIE----AIVALPTDLFFRTNIATYLWILSNR 413 + S + A + IR LI+ ++ I L +L Sbjct: 296 FLTSRYFMEAYNAQALRKFIREHFTIKRLIDFNGLRVIG-------GIGIDPALSLLVKG 348 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + R + + + I D + Q ++ E + S+M D Sbjct: 349 RAPTRHA----ARVSRFFVQKGKLRETPVYIEDLESSQP-KLHEDFETSQ-SQMDDGLWR 402 Query: 474 GY--RRIKVLRPLRMSFILDKTGL 495 Y R V+ + L Sbjct: 403 LYGPRTKTVVEKIEKRAPFTLENL 426 >gi|316985076|gb|EFV64029.1| type I restriction enzyme, modification chain [Neisseria meningitidis H44/76] Length = 173 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 9/122 (7%) Query: 83 TSEYSLSTLGST-NTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKA----GLLYK 135 T+ + L +T + + L IA ++ + K + + DF+ +L K L + Sbjct: 8 TTFDDIVKLKNTADIGDRLNKIIAQIAEANDLKGVIDVTDFNDE-DKLGKGKEMIDRLSR 66 Query: 136 ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 + F + L + D + + YE+L+R F +E + F TP +V + ++ Sbjct: 67 LVGIFKKLNLSSNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGIS 126 Query: 195 DD 196 D Sbjct: 127 AD 128 >gi|166363242|ref|YP_001655515.1| type I restriction-modification system DNA methylase [Microcystis aeruginosa NIES-843] gi|166085615|dbj|BAG00323.1| type I restriction-modification system DNA methylase [Microcystis aeruginosa NIES-843] Length = 352 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 12/186 (6%) Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 AG E ++R+ L+E ++ ++A+ ++ F+ ++ LW L+ K E + K+ +I+A Sbjct: 6 SSAGRDEGKVRQKLIETGTVDIMIAIRSNFFYTRSVPCELWFLNRGKPAELQDKILMIDA 65 Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486 +++ R + + +Q + IL I ++ R S+ GY + + R + Sbjct: 66 RNIY---RKVNRTINDFSPEQLQNILSIVWLYRSE---SKRFIDLVVGYCQ-SIDREYQG 118 Query: 487 SFILDKTGLARL----EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 S L + L EA + L WL++ F S + Sbjct: 119 SIALLQNYCEHLDKLTEALEKFYNLIDEKDGTWLELRTASELFKDDIDKYAGFAPISYNA 178 Query: 543 NEAKTL 548 ++ +TL Sbjct: 179 DDLETL 184 >gi|170025880|ref|YP_001722385.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis YPIII] gi|169752414|gb|ACA69932.1| type I restriction-modification system, M subunit [Yersinia pseudotuberculosis YPIII] Length = 100 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 17/102 (16%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + LA IW++A + + ++ IL F + L L Sbjct: 2 NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQL----------VQFVTRQG 51 Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 + E + N + N +Y FS Sbjct: 52 MTPEDIKAL------NEEDADTVKYVQDNLG-YFIAYDNLFS 86 >gi|126459362|ref|YP_001055640.1| N-6 DNA methylase [Pyrobaculum calidifontis JCM 11548] gi|126249083|gb|ABO08174.1| N-6 DNA methylase [Pyrobaculum calidifontis JCM 11548] Length = 504 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 67/381 (17%), Positives = 132/381 (34%), Gaps = 41/381 (10%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 N N L +Y S + + + IF L L +I + + I+ + Sbjct: 61 KNIANELFNYAISKTGDFEEIFGVNTVDRLPFMLTSLPKLKEIVRYLNQIKW--SDISVD 118 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V+ ++E LI E T +V L + + G L DP Sbjct: 119 VIGRVFEGLI---YEERRHLLGQHYTDTKIVDLILTGVF--------KKYGKPDKLLDPA 167 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR 269 CG+G FL A+N+ S + + G +++ + + I+ LE Sbjct: 168 CGSGTFLVRALNYWKIFYSTELDKLKMPIYEYVEGVDIDRLASMLAKINLYIQALEKIKE 227 Query: 270 RDL-SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 I +L + + Y ++NPP+ K+ E +K++K L + Sbjct: 228 GYKYVPKICHDDFFKINLSSD--YAYVVANPPYTKQVEMALAFYDKQYKENLLN----YV 281 Query: 329 PKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 I + + + KL GR ++ +S L A G + +++WL + Sbjct: 282 KDIENWDERASIYAYFLVRGGKL---LRKNGRLGFIVENSWL---NAEYG-APLKKWLFK 334 Query: 384 NDLIEAIV-ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 N +E ++ +L F + T + I V+ + + + Sbjct: 335 NFSVEYVIESLVERWFEDAAVITNIIIAEMTAQSNY--DVRFVFLKKSLRELIGDPPPAN 392 Query: 443 IINDDQ--RRQILDIYVSREN 461 + ++I+++Y +N Sbjct: 393 DFMANMQYYKRIMELYYEFDN 413 >gi|282932147|ref|ZP_06337600.1| N-6 DNA methylase [Lactobacillus jensenii 208-1] gi|281303726|gb|EFA95875.1| N-6 DNA methylase [Lactobacillus jensenii 208-1] Length = 57 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 + L + +W ++L G +++ V+L L+ + + E R + + Sbjct: 1 MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK 56 >gi|32476969|ref|NP_869963.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1] gi|32447517|emb|CAD79106.1| probable Type I restriction enzyme EcoEI M protein-Escherichia coli [Rhodopirellula baltica SH 1] Length = 351 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 47/174 (27%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++YE L+ + F TPR ++ L + L+ +P + + DP Sbjct: 193 DIQGDVYEMLLNEIS--SAGKNGQFRTPRHIIKLISELV----------NPQLGHRVCDP 240 Query: 213 TCGTGGFLTDAMNHV----------------------------ADCGSHHKIPPILVPHG 244 CGT GFL DA ++ + K +G Sbjct: 241 ACGTAGFLLDAYQYIITQLARKKAKKNQEFEPDEDGFIRTSVSGQLDQNKKDILEQSLYG 300 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + + + + +++ ++ + ++ TLSK + ++ Sbjct: 301 FDFDSTMVRLALMNLMMHGID-------NPHVDYQDTLSKSFSEEAEYDIVMAQ 347 >gi|304389844|ref|ZP_07371803.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327020|gb|EFL94259.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 283 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 38/240 (15%) Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285 +AD K HG EL+ AV A M++R +D + N++ L K+ Sbjct: 11 MADTDVQRKSIKKKQLHGFELQSNMFAVAAANMILR-------KDGNSNLECCDFLRKNT 63 Query: 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 K L NPP+ + + D + E + Sbjct: 64 AQVQLKGATVGLMNPPYSQGTKADTEQHE--------------------------LSFIE 97 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G RAA+++ S + E + + +L+ +E ++ ++ F+ + Sbjct: 98 HLLDSLTVGARAAVIVPQSSM--TGKSKAEKQFKNSILDKHTLEGVITCNSETFYGVGVN 155 Query: 405 TYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + I + + ++R + I+ D + + G D+R+ +LD++ R Sbjct: 156 PVIAIFTANEKHDKRKVCKFIDFRDDGYEVRAHVGLLEGDSAKDKRQHLLDVWFGRVEAP 215 >gi|297208852|ref|ZP_06925260.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296886510|gb|EFH25435.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 153 Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 21/72 (29%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 70 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129 Query: 66 NIDLESFVKVAG 77 E + + Sbjct: 130 AWADEEYREDLK 141 >gi|34540358|ref|NP_904837.1| type I restriction-modification system, M subunit [Porphyromonas gingivalis W83] gi|34396670|gb|AAQ65736.1| type I restriction-modification system, M subunit, putative [Porphyromonas gingivalis W83] Length = 648 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 85/569 (14%), Positives = 158/569 (27%), Gaps = 142/569 (24%) Query: 44 LECALEP--------TRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGS 93 L L + + + + ++ E F + + L Sbjct: 104 LSDILSERWTIADLIEKDKLISERKSLKDLILEMEDEVLAGAGVDVFEEVFKLIFTKLFD 163 Query: 94 T-----NTRNNLE-----SYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKN-- 139 N NLE + + +F+ + + K L Sbjct: 164 EMESGRNNERNLEFRNYGDTETELKERIQNLFDKARDKWEGVFSPDAKIQLTPSHLSVCV 223 Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 S ++ V+ +E+LI + + TPR V+ + +L Sbjct: 224 ASLQDVKLFNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML-------- 272 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL---------EPE 250 +P + D G+ GF + HV + K E Sbjct: 273 --NPTANEKMIDTASGSCGFPVHTIFHVWENILKEKGLERSHLFTLEQKPAECTDYVNDN 330 Query: 251 THAV---CVAGMLIRRLESDPRRDLSKNIQQGSTL------------------------- 282 A+ A + R L D N+ +TL Sbjct: 331 VFAIDFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEQNLDSEDWQDTYFEGWKKL 389 Query: 283 -----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----------------- 320 KD + F ++NPPF + ++ + + + Sbjct: 390 KKLRTRKDSYRDFTFDIVMANPPFAGEVKESRILAKYDMSRSMSLEKVKIAPKGATIVEG 449 Query: 321 LGRFGPGLPKI-------SDGSM---------------LFLMHLANKLELPPNGGGRAAI 358 F L SDG+ LF+ + L+ GGR AI Sbjct: 450 EPTFSEALANTGETIYQMSDGTYRKTKLKQAGNMSRDILFVERNLDFLKP----GGRMAI 505 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417 VL N S + +R ++ + I A+V L ++F T T + + E Sbjct: 506 VLPQGRFNN----SSDKALREYIADRCRILAVVGLHGNVFKPHTGTKTSVLFVQKWDEEL 561 Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 + + + +++ K D+ +I + E G+ +LD Sbjct: 562 CPR---VEDYNIFFATMQEPSK------DNSGDKIYRSTTN-EEGENVPLLDTHG----H 607 Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506 + V L L + G+A A+ ++ Sbjct: 608 LIVKHDLFNHDGLTEDGIAEAFAEFAKKE 636 >gi|237751321|ref|ZP_04581801.1| type I restriction enzyme modification subunit [Helicobacter bilis ATCC 43879] gi|229372687|gb|EEO23078.1| type I restriction enzyme modification subunit [Helicobacter bilis ATCC 43879] Length = 561 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 108/308 (35%), Gaps = 58/308 (18%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TPR+V D +Y+P G G N + Sbjct: 114 YSTPREV----------NDLLALLLDLQDNDEVYNPCYGIGSIFLSLGN----------L 153 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 P + +G+EL+ + L + + + L + +F ++F Sbjct: 154 NPNIHLYGEELDERLSNIAR-------LIARFTQIKDYKLYVNDILKQPVFKAGSILRQF 206 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351 + + NPP ++ RF G+ + ++FL H L+ Sbjct: 207 NKVICNPPLYAHMGVEQ--------LKGDERFSKIGILAKNYPELVFLTHALAHLKQ--- 255 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 R ++ + L E ++R L++ +IEA++ LP ++F + ++S Sbjct: 256 ---RGVFIVRNQTLQKSFL---EEKLRDKLVKERMIEAVIELPKNIFPHQACDFSVLVIS 309 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + ++ INA + +GK R+ +I +++ + +FS++ + + Sbjct: 310 HN-----NKEILHINANNP-HFYTKDGKYNRL---RHIDEIANLFKQKRESEFSKITNIK 360 Query: 472 TFGYRRIK 479 ++ Sbjct: 361 DVKTHDLR 368 >gi|222481388|ref|YP_002567624.1| N-6 DNA methylase [Halorubrum lacusprofundi ATCC 49239] gi|222454764|gb|ACM59027.1| N-6 DNA methylase [Halorubrum lacusprofundi ATCC 49239] Length = 694 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 67/411 (16%), Positives = 138/411 (33%), Gaps = 66/411 (16%) Query: 93 STNTRNNLESYIASFSDNA--KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 ++ + +LE Y + D +AI+E + S I G L +L Sbjct: 250 PSHVQEDLEEYFSHLVDEVDFEAIYEHDNIYSEIPLDAVEGKLRAFILELDDYDL--SQF 307 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 V+ IYE +I ++ ++ TP + L T L + D T+ Sbjct: 308 NSDVIGRIYEGVI---PADRRRAMGEYYTPPAICDLITRLTVQSSDD----------TVL 354 Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 DP CG+GGFL A + + D + G E+ + + I+ L + Sbjct: 355 DPACGSGGFLVSAYHRLHDKLPEPAGGHEHILSHLSGVEINRFPAHLTAINLAIQDLSAY 414 Query: 268 PRRDLSKNIQQGS-----------------TLSKDLFTGKRFHY--CLSNPPFGKKWEKD 308 + T +++ +R Y + NPP+ ++ D Sbjct: 415 TEWVDVEIKDFFDVKKYQKLGGREMAGAGGTETEEGLGDQRGGYDAVVGNPPYIRQENID 474 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + H + + S + + G + S L Sbjct: 475 DKDKVRNHLSSDEIDAEDM---SSYSDI--YAYFITHGTEFLADGVDFGFITSDRWL--- 526 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 GE +++++LL+N I AI+ +F + + + IL + + R Sbjct: 527 DTQYGE-DVQQFLLDNYEIRAIIKFDRQVFDDALVDSSVVILRRQSDKSERD-------- 577 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479 +++ + ++ ++ D I++ E + ++++ YR + Sbjct: 578 ---SNVAKFLRLKQELSIDDIAAIVE-----EEAEPNKLVTNDD--YRLVT 618 >gi|193069590|ref|ZP_03050543.1| type IIS restriction enzyme M protein [Escherichia coli E110019] gi|192957137|gb|EDV87587.1| type IIS restriction enzyme M protein [Escherichia coli E110019] Length = 653 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 111/321 (34%), Gaps = 61/321 (19%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 E + + ++ + R G + + +TP V L L D+ Sbjct: 301 EYYKIGLTTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLARVNKDS------ 354 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETH 252 ++D G+ G L AMN + + G E+ + Sbjct: 355 ----YVWDFATGSAGLLVAAMNEMLIDARENIHSPNELQLKEAQIKAEQLLGLEVLSSIY 410 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + + M++ D S NI +L+ ++ + + F Sbjct: 411 MLAILNMILMG-------DGSSNILNKDSLAD---FDGKYGFGKTGEKFPADA------- 453 Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 F P + G+ M+F+ + ++ G AA+++ SS G Sbjct: 454 -----------FILNPPYSAKGNGMIFVQKALSMMDK-----GYAAVIIQSSA---GTGK 494 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430 + E + +L+ + + A + +P DLF +++ TY+++ + + V+ I+ ++ Sbjct: 495 ATEYN--KKILKENTLLASIKMPADLFIGKSSVQTYIYVFQVKIPHNAKQAVKFIDFSND 552 Query: 431 WTSIRNEGKKRRIINDDQRRQ 451 + N K R + D R + Sbjct: 553 GYARSNRKKARNNLVDADRAK 573 >gi|238852889|ref|ZP_04643292.1| putative restriction-modification enzyme [Lactobacillus gasseri 202-4] gi|238834481|gb|EEQ26715.1| putative restriction-modification enzyme [Lactobacillus gasseri 202-4] Length = 907 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 66/417 (15%), Positives = 136/417 (32%), Gaps = 60/417 (14%) Query: 117 DFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 DF F ++ +L ++ + +L + + +E ++ + + Sbjct: 15 DFQFKDVYDNQTYIDNLNILKELVDLIAPYKLKYAKKQQF-LGDFFESIL---SNGFKQE 70 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVAD 229 A F TP + H + L P S R + D CG+G F+T+ M+ + Sbjct: 71 AGQFFTPVPLAHFIVSSLPLPQRTKTIISDESSRQLLPRMIDFACGSGHFITEYMDEMQK 130 Query: 230 CGSHHKIPPILVPHGQELEPETHA-VCVAGMLIRRLESD------------PRRDLSKNI 276 + + Q + + + L+ D D I Sbjct: 131 IIETTDLKQLSKKQQQNFKQFKDNPFAWSNHYVYGLDIDYRLVKTSKVSSFLNGDGDAII 190 Query: 277 QQGS------------TLSKDLFT--GKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGEL 321 ++ + L + + F ++NPP+ ++ + +E++ + G+L Sbjct: 191 RRANGLASFSTSDYSEALHSENHEKMNQVFDILIANPPYHVDEFKSELPNLEEDFELGKL 250 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 S+ LF+ + L+ G I+L S+ L E+ R+ L Sbjct: 251 I-----TNNSSEIEALFIERASQLLKTD----GLMGIILPSAILDTENNIYVEA--RKML 299 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 L+ I AI+ P F + I R+ ++ K++ IR Sbjct: 300 LKRFEIVAIMKNPNKATFSATKVETVTIFGKRRNDDNVLKIE--------KQIRKALNNG 351 Query: 442 --RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496 I + R + Y+ GK + DY + + + ++ + L Sbjct: 352 PVNDITLNHRENCISTYIDHVFGKEFTLQDYTNLLAGKYEGEDTIVDNYKKEYKRLK 408 >gi|322372143|ref|ZP_08046684.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253] gi|320548152|gb|EFW89825.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253] Length = 920 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 100/313 (31%), Gaps = 39/313 (12%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F + E L + V + +YE LI + F T Sbjct: 248 FDAVPTDAETNERLRAFADSIERE--PLSEVDIDIAGWVYERLI---PDDERTRLGQFYT 302 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P ++ L + + D + DP GTG A + + + G+ P+ Sbjct: 303 PDEIGRLLSRWAIRSPDDR----------VLDPASGTGSLTVHAYDRLDELGTRSHWDPL 352 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLS 297 +++ + + + R + + D T RF ++ Sbjct: 353 ERLTAVDVDGFSLRLLALNLASRGGHDPANGPFAADRFAYHRDFFDLDPDTVGRFDATVA 412 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-----------FLMHLANKL 346 NPP+ ++ A ++EH L FGPG SDG + Sbjct: 413 NPPY---VRQECLAADREHFREHLADFGPG----SDGIYADGEKEIDGRSDLYCYFLTHA 465 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G R A V+ + + A G S R +L ++ +EA+V LF + T Sbjct: 466 TGFLREGARLAWVVPTKWMV---ADYGPSLQR-FLYDHYTVEAVVGFRNRLFDDALVDTV 521 Query: 407 LWILSNRKTEERR 419 L +L E R Sbjct: 522 LLLLERTDDEAVR 534 >gi|194324119|ref|ZP_03057893.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|194321566|gb|EDX19050.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] Length = 169 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 12/174 (6%) Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 IR+ L+E +L++ IV LP LF T I LW + K + + I+A + I Sbjct: 2 IRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI---KRGRKTKDILFIDARNKGHLINR 58 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-----FGYRRIKV-LRPLRMSFIL 490 K +DD +I Y + + S + G+ + ++++L Sbjct: 59 RTK---EFSDDDITEIAQTYHNWKLSCHSELDSKSHKYEDIKGFCKSASYEEVAELNYVL 115 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544 LE + S + + M Q+ + + + E Sbjct: 116 TPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQEEALNQRIMDNLAKIKIAEE 169 >gi|33151530|ref|NP_872883.1| type II DNA modification (methyltransferase [Haemophilus ducreyi 35000HP] gi|33147750|gb|AAP95272.1| possible type II DNA modification enzyme (methyltransferase) [Haemophilus ducreyi 35000HP] Length = 446 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 80/240 (33%), Gaps = 32/240 (13%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 YN SE L+ + T N+ + + K++ + + + L+ +L +I K Sbjct: 216 YN-SEQILNNIYPT--VKNILTAEDVPEEKLKSLELELNSINQDPSLKNTNILKEILKEL 272 Query: 141 SGI------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 + T +M YE +R F + +TPR + L T L+ Sbjct: 273 DENIIQLFNDTFSTTSNYDIMGKFYEEFLR-FAGVSNVKKGIVLTPRHIATLFTKLIPFK 331 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-HHKIPPILVPHGQELEPETHA 253 + D CGTG FL MN + + G E+ P + Sbjct: 332 KNDKI----------LDLCCGTGAFLIAGMNKLLSLKGIDAQNVKSNQLLGFEINPTMYI 381 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYCLSNPPFGKKWEKDK 309 ++ ML R D I +++ D + NPP+ K K+ Sbjct: 382 CAISNMLFRG-------DGKSKIYNMDSINDDKVNKIISESAPTIGFINPPYSGKENKED 434 >gi|218439051|ref|YP_002377380.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] gi|218171779|gb|ACK70512.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] Length = 711 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 98/282 (34%), Gaps = 56/282 (19%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + S L+ A + E P+ ++ F + Sbjct: 101 IPNLNLQSIQENLDNA---------INQAENIPNLYNHHIL----------FRLSTRQSG 141 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TPR + L +L D CG+GGFL + V + Sbjct: 142 GRYPTPRHITKFIYNL----------AQVKPDHSLADFACGSGGFLVERELTVDNYHKT- 190 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 G ++ PE + + +R+L R + +++ + L F Sbjct: 191 --------WGIDISPEWIRLAYTNIALRKLPPLLRSGNALDVETFNKLKFKQKEYTIFDR 242 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 L NPPFG+K + G+ G + S+ ++ L +L G Sbjct: 243 ILMNPPFGEKIDTKLAV----------GKLGKTVGSRSETALTTLA--IQQLAED----G 286 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 AAI++ S LF+ E E+R+ L++ ++A++ LP D Sbjct: 287 IAAILVPSGLLFSNSK--AEKELRQTLIDEYHLKAVLTLPKD 326 >gi|309704635|emb|CBJ03985.1| putative type I restriction-modification subunit [Escherichia coli ETEC H10407] Length = 70 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 18/42 (42%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL 48 + +A IW++A + + ++ IL F + L L Sbjct: 2 NKQQIAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQL 43 >gi|315124538|ref|YP_004066542.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018260|gb|ADT66353.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 960 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 61/400 (15%), Positives = 117/400 (29%), Gaps = 24/400 (6%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP + L P + ++ +R + D CG G FL N + Sbjct: 6 KQDEGQFFTPIQICEFIMYSL--PLHEMLSKNSKALR-VIDYACGAGHFLNTYANELKRY 62 Query: 231 GSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL----- 282 + ++ +G E E V M + + D + + +T Sbjct: 63 LTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGE 122 Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +K F ++NPP+ + + + + KN + ++ F Sbjct: 123 KAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSKNTYKLFNDDINIETNNSIECF--- 177 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + N +AAI+L SS L S R L +N AIV L F T Sbjct: 178 FCERANQILNDNAKAAIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGAT 234 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 T + L ++T ++ + + + + I E K + + Sbjct: 235 GTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDSENFYQNYLSAYCDFRKFDK 294 Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521 +S L+ G K+ + + K+ + K Sbjct: 295 ELYSNFLN----GNLDSKLAELEAFKDYCNAFRQTSDYKRLKESKIYKESKDKQDLEDKA 350 Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561 + + + E +K + F+ Sbjct: 351 FLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFL 390 >gi|304411252|ref|ZP_07392867.1| N-6 DNA methylase [Shewanella baltica OS183] gi|304350445|gb|EFM14848.1| N-6 DNA methylase [Shewanella baltica OS183] Length = 680 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 104/309 (33%), Gaps = 62/309 (20%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + G + + +TP + L L D+ ++D G Sbjct: 340 GKLFNEMYGWLGFSQDKLNDVVLTPSYIATLLAKLARVNKDS----------YVWDFATG 389 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L AMN + + G E+ + + + M++ Sbjct: 390 SAGLLVAAMNEMLNDAKNTIASPEELVKKEVQIKAEQLLGLEMLSSVYMLAILNMILMG- 448 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 D S NI +LS D ++ + ++ PF F Sbjct: 449 ------DGSSNILNEDSLSFDG----KYGFGKTDEPFPADA------------------F 480 Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P + G+ M F+ + G AAI++ +S G + E R +L+ Sbjct: 481 ILNPPYSAPGNGMNFVEKALGMMSR-----GYAAIIIQNSA---GAGKAKEINQR--ILK 530 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + A + +P D+F +++ TY+++ + + V+ I+ ++ + K Sbjct: 531 KHTLSASIKMPIDIFIGKSSVQTYIYVFKVNEAHHKDDLVKFIDFSNDGYIRTSRKKSNN 590 Query: 443 IINDDQRRQ 451 + D R + Sbjct: 591 NLKDIDRAK 599 >gi|167769855|ref|ZP_02441908.1| hypothetical protein ANACOL_01189 [Anaerotruncus colihominis DSM 17241] gi|167668216|gb|EDS12346.1| hypothetical protein ANACOL_01189 [Anaerotruncus colihominis DSM 17241] Length = 604 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 54/316 (17%), Positives = 91/316 (28%), Gaps = 68/316 (21%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMIRT-- 208 ++ +E ++R + + T ++V + +K+S Sbjct: 268 DIIGAFFEEILR---VGFKQDKGMYFTHSNIVRFMVEAIGLESLTQDTWKKSTHPENRLP 324 Query: 209 -LYDPTCGTGGFLTDAMNHVADCGSHHK-----------------------IPPILVPHG 244 + DP CG+G FL AM + K +G Sbjct: 325 YVIDPACGSGTFLLHAMQTITRAIKSKKLDLVNDFESIQFYDARMSDAVPNYWAENFVYG 384 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------------- 289 + + M++ + + ++ S Sbjct: 385 FDPQFIMAITAKVNMVLHG-DGSAHIFKYDAFKPLTSYSDPKLRPAGERIRTIASKAYPH 443 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + F LSNPPFG E F + S+G LF+ L Sbjct: 444 NVCETFDVVLSNPPFGVTLSP-------EVTRDIKNTFSLSSSQPSEG--LFVERYFQLL 494 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + GGR +VL S +R L I+A+VALP ++F T T Sbjct: 495 KP----GGRLGLVLPESIFNAVDLLP----VRILLYRFFKIKALVALPRNVFIDTPTLTS 546 Query: 407 LWIL-SNRKTEERRGK 421 L K+E + Sbjct: 547 LLFAQKKNKSELLQWD 562 >gi|150024355|ref|YP_001295181.1| type II endonuclease-methyltransferasefusion protein [Flavobacterium psychrophilum JIP02/86] gi|149770896|emb|CAL42361.1| Probable type II endonuclease-methyltransferasefusion protein [Flavobacterium psychrophilum JIP02/86] Length = 1003 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 70/455 (15%), Positives = 140/455 (30%), Gaps = 109/455 (23%) Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED----------FDFSSTIARLE-KAG 131 S Y + + + + + +FS + E+ F + + ++ Sbjct: 272 VSLYDRYKIYFNDLNSGAKVQLPAFSQTTSNVVEEHQIFAYNGGLFKADAILDHIKIDDA 331 Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED--------------F 177 +L+K +N S + + + + +I+E+ + ++ + F Sbjct: 332 VLFKHTENLSNYDFASEVDVNI-LGHIFENSLNELDEIKAQLEGESIDKTKTKRKKDGVF 390 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIR------------------------------ 207 TP+ + + K ++ Sbjct: 391 YTPKYITKYIVENTIGKLCEEKKTELQLVDEDYTTDKKRQKKTLQALIDKVETYRSWLLQ 450 Query: 208 -TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP------------------ILVPHGQELE 248 T+ DP CG+G FL A++ + + G +L Sbjct: 451 LTICDPACGSGAFLNQALDFLIAQHQYIDELKAKLFGDTFVLSDVENSILENNLFGVDLN 510 Query: 249 PETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKD-----------------LFTGK 290 E+ + + +R + + DLS NIQ G++L D +F Sbjct: 511 EESVEIAKLSLWLRTAQPNRKLNDLSSNIQCGNSLIDDVAVAGDKAFNWQTAFEKVFAKG 570 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + NPP+ + + E +F KI D LF L+ Sbjct: 571 GFDVIIGNPPYVL----CQPSNTNEITLDYYKKFEVASYKI-DLFHLFFEKSITLLKEK- 624 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G+ + ++ L N ++R ++L N IE IV +FF ++ IL Sbjct: 625 ---GKLGFITPNTYLTNKYIQ----KLRNYILNNTSIETIVNYEDSVFFDASVDVATIIL 677 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 K +Q+ N ++ + KK+ Sbjct: 678 KKEKVLNES--IQIFN-SNFGKIVELGSKKQVDWQ 709 >gi|153955553|ref|YP_001396318.1| Type I methyltransferase subunit-related protein [Clostridium kluyveri DSM 555] gi|219855947|ref|YP_002473069.1| hypothetical protein CKR_2604 [Clostridium kluyveri NBRC 12016] gi|146348411|gb|EDK34947.1| Type I methyltransferase subunit-related protein [Clostridium kluyveri DSM 555] gi|219569671|dbj|BAH07655.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 611 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 61/406 (15%), Positives = 122/406 (30%), Gaps = 71/406 (17%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 Y+ F+D T + A + + + I + V+ + ++ Sbjct: 124 KYLIGFNDE--------KLKKTPDIVFNANKVKYVVEALQEISFTSNKYD--VLGDFFQK 173 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMIR--TLYDPTCGTG 217 ++R SE+ + ++T ++V + + L G R + DP+CG+G Sbjct: 174 IVR---SELKQTKGQYLTHHNIVDFIVKAIDVENLAIDLINGKEGRPRLPYIIDPSCGSG 230 Query: 218 GFLTDAMNHVADC--------------------------GSHHKIPPILVPHGQELEPET 251 + M + +G E+ P+ Sbjct: 231 TYQIQCMKEITRSILSDMDKREKIQIADDIDDFLSVNFPKHKQNAWAKDYIYGIEIYPDL 290 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGS------------TLSKDLFTGKRFHYCLSNP 299 M+ S I + + ++F +SNP Sbjct: 291 AMATKVNMVGHGDGSANILPNDGLIDFADYPNGKLLNVKKTSNVYPKYVNEQFDIVVSNP 350 Query: 300 PFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLANKLELPPNGGGRA 356 PF +++ K + GE + D LF+ L GR Sbjct: 351 PFSITVDRETAKQFPKLYIQGEKIQKSLKKENKKIIDTENLFIERWYQLLRPK----GRL 406 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT 415 +VL S S EIR ++ + ++A+V+LP F T T L + Sbjct: 407 GVVLPESVF----DLSSNKEIRLFIFKYFWVKAVVSLPYLAFAPYTMTKTSLLFAQKKTE 462 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 +E N W + K ++ ++++ ++ + Sbjct: 463 KEVEDW----NDNWDWYNKEFIKIKNQLDKLKKKKETSSLHDNFVE 504 >gi|297209069|ref|ZP_06925468.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296886002|gb|EFH24936.1| type I restriction-modification system [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 92 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 21/72 (29%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 A L +W A DL G+ ++F IL R L E + Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68 Query: 66 NIDLESFVKVAG 77 E + + Sbjct: 69 AWADEEYREDLK 80 >gi|254415121|ref|ZP_05028883.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196177927|gb|EDX72929.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 664 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 64/364 (17%), Positives = 115/364 (31%), Gaps = 70/364 (19%) Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 NA+ I+ F + + I + + V ++ +Y + R + Sbjct: 68 NAQNIYAHFFTGRELFNWYQLNEQQLIMTLYQLSRFNFAGVDSDIVGTVYNTYVSR---K 124 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + + TP ++V+ + A G + L DP CG+G FL A + Sbjct: 125 EKKEKGQYYTPPEIVNYILDEVGYVSGAGII---GKNKRLIDPACGSGSFLVAAAKRLVS 181 Query: 230 CGSHHK----------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS------ 273 ++ G +L P + +LI+ L+ Sbjct: 182 AYKNNTDQIDDPVTVLERVQANLFGFDLNPFACYLAEVNLLIQVLDLVKLAYKKQQHQPI 241 Query: 274 --KNIQQGSTLSKDLFT-----------------------------GKRFHYCLSNPPFG 302 +I L++ T F + ++NPP+G Sbjct: 242 KRFHIYNVDALARPAGTYRFALFNTLIAEESDQVDQIKSRSPNTSYANGFAFVVANPPYG 301 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 K DA + + F G P +F + L +L G + + Sbjct: 302 AKLS---DAYKNTLRADYADVF-YGKPDT----YIFFLKLGTEL---LAKNGSFGFITPN 350 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR--G 420 + L + + +RR LL I IV LP ++ N+ L L+ E+ R Sbjct: 351 TYLMGINS----AALRRELLNVGGIYQIVDLPQGIWADANVDCVLLFLNEEDDEKSRRNQ 406 Query: 421 KVQL 424 KVQ+ Sbjct: 407 KVQI 410 >gi|86130652|ref|ZP_01049252.1| DNA adenine methylase [Dokdonia donghaensis MED134] gi|85819327|gb|EAQ40486.1| DNA adenine methylase [Dokdonia donghaensis MED134] Length = 833 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 62/398 (15%), Positives = 132/398 (33%), Gaps = 82/398 (20%) Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 ++E++ FG S ++F+ + S++N + L TN N + + Sbjct: 17 IQEEFKTFGISIESFDAFLYLLALSYFNKTNTHLEK---TNLLPNSNGLFGGLAKGLLKL 73 Query: 115 FEDFD-----------FSSTIARLEKA---GLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 ED D F+ I R A L +++ + + + +E Sbjct: 74 TEDKDDKYIIEETNSVFNDIIKRWPAAFLENLKLNFLSSYALKTDYNIGKENFPL--FFE 131 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 L++R+ A + P ++ + + + Y+P G F Sbjct: 132 ILLKRYLETQGRNAGLTILPEEISKFICDITATSSEQVI----------YNPFAGLASFG 181 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + V G+EL+ A+ + +R+ + + G Sbjct: 182 MYSNE-------------NSVYVGEELDERIAALANCRLWLRKNKMHKA------VYSGD 222 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 + L K+ +++PPFG + +D + Sbjct: 223 SFDSKLEFNKKVDLFVASPPFGLRISNFEDKL---------------------------- 254 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 +A+ L+ G ++ + F E+R+ L+++DL++ +++ P L Sbjct: 255 -IAHSLKSTSGKGKILLLIPN---TFLISERKDHKELRKKLIDDDLVDMVISFPGGLLPN 310 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 + IA + IL+ K + V + A S R + Sbjct: 311 SGIAFSILILNKSK--KVPKDVTFVKADAFVKSNRRQK 346 >gi|332974668|gb|EGK11585.1| type II restriction modification enzyme methyltransferase [Kingella kingae ATCC 23330] Length = 244 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 47/233 (20%) Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGK 303 EL E + + M++R D S I++GS ++ F+ + L NPPF Sbjct: 2 ELNAEMYTLAATNMILRG-------DGSSRIEKGSAFNRPESLFSEFQADRLLLNPPFSY 54 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + M F+ + +K++ G AI++ S Sbjct: 55 EENG----------------------------MPFIKYGLSKMQKDGLG----AIIIQDS 82 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422 S + +L++ + A + +PTDLF + T ++I + V Sbjct: 83 AGSGKAVMSN-----QEILKSHTLLASIKMPTDLFQPMAGVQTSIYIFKAGTPHDVEQPV 137 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475 + I+ ++ G + + + I+ IY + +N K S L Y Sbjct: 138 KFIDFSNDGYKRTERGLRELDNPEQRYADIVKIYKAGKNAKVSAELWNLDNVY 190 >gi|282164224|ref|YP_003356609.1| hypothetical protein MCP_1554 [Methanocella paludicola SANAE] gi|282156538|dbj|BAI61626.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 589 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 36/265 (13%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 A TP V +DP A + ++D +CGTG FL A+ + Sbjct: 38 RDAGVVYTPLPVARYICRQAIDPYLATGNSIENI--RVFDSSCGTGIFLQAALEELYRLR 95 Query: 232 SHHKIPPILVP---------HGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + G +++ + A ML+ S+ + + N+ + Sbjct: 96 AEKSDLSEYELKKQIIEKCLFGMDIDQYSADAAFLRLNMLL---PSNGEKQIKVNVACDN 152 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---- 336 L F + NPP+ + D + + R L +G++ Sbjct: 153 ALFATG--VGTFDVIVGNPPYMRIKSMSGDLKTSLPEKVKASR----LYNYQEGNLNLYK 206 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-- 394 LF+ L+ GR +++ SS L + ++R+ + + +E +V +P Sbjct: 207 LFIERNLGFLKES----GRMGLIIPSSFLNEATSE----KLRKHIFDTCSLEEVVEIPER 258 Query: 395 TDLFFRTNIATYLWILSNRKTEERR 419 + +F N AT + +L K R Sbjct: 259 SRIFPGVNQATAIIVLKKSKASHGR 283 >gi|85861003|ref|YP_463205.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB] gi|85724094|gb|ABC79037.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB] Length = 51 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE 49 MT + + L +F++K A+ L G ++F + I L+RL + Sbjct: 1 MTTEKITLSQLESFLFKAADILRGKMDASEFKEFIFGMLFLKRLSDEFD 49 >gi|198283262|ref|YP_002219583.1| type I restriction-modification system methylation subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667778|ref|YP_002425844.1| hypothetical protein AFE_1415 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247783|gb|ACH83376.1| type I restriction-modification system methylation subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519991|gb|ACK80577.1| conserved domain protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 88 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + L I+K A L G ++F + I L+R E R+ V + + G + Sbjct: 4 TLPQLERHIFKAAGILRGKIDASEFKEYIFGMLFLKRCSDVFEQRRAEVIQLEIDAGKTP 63 Query: 67 IDLES 71 + E+ Sbjct: 64 AEAEA 68 >gi|297521619|ref|ZP_06940005.1| DNA methylase M [Escherichia coli OP50] Length = 197 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 20/124 (16%) Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-- 412 RAA+V+ + LF G G ++IRR L++ + I+ LPT +F+ + T + + Sbjct: 1 RAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 57 Query: 413 ----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------REN 461 + + V + + T++ + G KR D+ + +Y R Sbjct: 58 VANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRSE 113 Query: 462 GKFS 465 G++S Sbjct: 114 GEWS 117 >gi|218247760|ref|YP_002373131.1| N-6 DNA methylase [Cyanothece sp. PCC 8801] gi|218168238|gb|ACK66975.1| N-6 DNA methylase [Cyanothece sp. PCC 8801] Length = 692 Score = 74.2 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 94/290 (32%), Gaps = 44/290 (15%) Query: 108 SDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S ++I + I+ L + + + L + N++ H I F Sbjct: 74 SAELQSIIDTVTNLVPISTLPRHPKDIRNLNLELIQENLKNAINEVENIPNLFNHYIL-F 132 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + TPR + L +L D CG+GGFL + Sbjct: 133 RLSTRQSGGRYPTPRHITQFIFNLAQIE----------PHHSLADFACGSGGFLVERELT 182 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + G ++ PE + + +++ + N+ D Sbjct: 183 IDNYSKT---------WGIDISPEWIRLAYTNIALKKFPPQLGSGNAINVAN-----SDD 228 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + + L NPPFG + D + R L KL Sbjct: 229 WKDRVCDRILMNPPFG--EKIDSKLATENLGKNVGSRSETALT----------TLAIQKL 276 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 G A I++ S LF+ E E+R+ L+++ ++A++ LP D Sbjct: 277 AED----GIAGILVPSGLLFSNSK--AERELRQTLIDDYHLKAVITLPKD 320 >gi|325919125|ref|ZP_08181184.1| type I restriction-modification system methyltransferase subunit [Xanthomonas gardneri ATCC 19865] gi|325550434|gb|EGD21229.1| type I restriction-modification system methyltransferase subunit [Xanthomonas gardneri ATCC 19865] Length = 273 Score = 74.2 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 78/238 (32%), Gaps = 56/238 (23%) Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFT 288 G E +P A+ + M++R D N+ QGS Sbjct: 9 QERNRIKSKGLIGIEQQPNMFALAASNMILRG-------DGKANLYQGSCFDDAIAKAVK 61 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + L NPPF + + F+ + LE Sbjct: 62 KHKADVGLLNPPFAQGTADLH-------------------------ELRFIQQMLYALE- 95 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 GG AIV + + +R+ L+ +EA++++PT+LF+ + Sbjct: 96 --EGGTGVAIVPMGCAI-------APNLLRQELMAEHTLEAVMSMPTELFYPVGAVCCIM 146 Query: 409 ILSNRKT-EERRGKVQL-INATDLWTSIRNEGKKRRIINDDQ-----RRQILDIYVSR 459 + + K + + D + +++G+ I+ + R +D+Y +R Sbjct: 147 VWTAHKPHAQSKRDTWFGYWKQDGFIKTKHKGR----IDPEGEWHLLRDHWIDMYRNR 200 >gi|169350786|ref|ZP_02867724.1| hypothetical protein CLOSPI_01559 [Clostridium spiroforme DSM 1552] gi|169292649|gb|EDS74782.1| hypothetical protein CLOSPI_01559 [Clostridium spiroforme DSM 1552] Length = 167 Score = 74.2 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 24/152 (15%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52 M E ++ L + +W A+ L ++ +L + L + + Sbjct: 13 MAE-AENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLINDEK 71 Query: 53 ----SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL--ESYIAS 106 E+Y E ++ Y T + RNN Y+ Sbjct: 72 PSSLKEALEEYREALKDESADELMEEIKSACHYVIEPDLTYTYFADAARNNSFNREYLQK 131 Query: 107 FSDNAK-------AIFEDFDFSSTIARLEKAG 131 +N + +F D D S RL Sbjct: 132 AFNNIEQSNPLFADLFTDIDLYS--NRLGTGD 161 >gi|297587713|ref|ZP_06946357.1| type I restriction-modification system [Finegoldia magna ATCC 53516] gi|297574402|gb|EFH93122.1| type I restriction-modification system [Finegoldia magna ATCC 53516] Length = 154 Score = 74.2 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 16/113 (14%) Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162 D+ K +FE D +T +L EK L I I + + YE+L Sbjct: 23 DDIKGLFE--DIDTTSNKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYL 80 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 I + S + +F TP+ V L L++D ++ K +YDPTCG Sbjct: 81 ISNYASNAGKSGGEFFTPQTVSKLLAKLVMDGKTSINK--------VYDPTCG 125 >gi|254416835|ref|ZP_05030584.1| hypothetical protein MC7420_1610 [Microcoleus chthonoplastes PCC 7420] gi|196176381|gb|EDX71396.1| hypothetical protein MC7420_1610 [Microcoleus chthonoplastes PCC 7420] Length = 78 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 4 FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 T + A L +W A+ L G ++ V+L L+ + A + + ++ Sbjct: 17 KTSNGAKLCFEQTLWTAADKLRGLMDAVEYKHVVLGLIFLKYISDAFQERYQKLDKE 73 >gi|310831004|ref|YP_003969647.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis virus BV-PW1] gi|309386188|gb|ADO67048.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis virus BV-PW1] Length = 913 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 113/350 (32%), Gaps = 30/350 (8%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 YN S + L + + + N +D DF + +K +L + K+ Sbjct: 184 YNILCKSKNNLDGKSILEKTGELLLNH-RNTSKFIKDSDFINC----KKNSILKDLIKDI 238 Query: 141 SGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 ++ YE + + + +F T R ++ + ++ D Sbjct: 239 QTFCEKYHIFEYSDIVGIAYEFWMNEYRGGGGKELGNFFTERRLMRMCFEMIDKKDIKRL 298 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 K + T+ D CGT GF + + D +G E E + + Sbjct: 299 KINNDS--TIGDEFCGTFGFPLYLKSFLKDKFKIDIKNEN--IYGVEFEDRASRMAILNA 354 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHK- 317 + D +N+ +G + ++ + N PFG + + K+ +E+K Sbjct: 355 M-------FSLDNVENVVRGDSFITNISP--HLDISVHNVPFGGRMKYKNIKRHYEEYKI 405 Query: 318 -NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + ++ F + ++ + L G I+ Sbjct: 406 NHPDIPGFDEIIKSKANQDATLASQMV--LYKTNKMG--ICIIKDGQE--ATGTTKELVA 459 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426 R++L ++ I+ I+ +P+ F T T K + +Q + Sbjct: 460 YRKFLCDSVNIKKILKIPSGAFSSTGTKT--LCFYFVKDGNKTENIQFLE 507 >gi|77164667|ref|YP_343192.1| type I restriction-modification system, M subunit [Nitrosococcus oceani ATCC 19707] gi|254434661|ref|ZP_05048169.1| hypothetical protein NOC27_1592 [Nitrosococcus oceani AFC27] gi|76882981|gb|ABA57662.1| type I restriction-modification system, M subunit [Nitrosococcus oceani ATCC 19707] gi|207090994|gb|EDZ68265.1| hypothetical protein NOC27_1592 [Nitrosococcus oceani AFC27] Length = 129 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 7/117 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M++ + N W + G + IL ++ + Y Sbjct: 1 MSKIQQK--DINNAAWAACDTFRGVVDPAQYKDYILVMLFVKYISDVWRDHYQEYHRHYG 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117 + D K+A F S + T + SF + +++E Sbjct: 59 -----DDDARIRRKLARERFVLPSVEITENRQNEKTGKEATIVVDSFMADFYSLYER 110 >gi|196234435|ref|ZP_03133261.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428] gi|196221491|gb|EDY16035.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428] Length = 730 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 89/269 (33%), Gaps = 39/269 (14%) Query: 154 VMSNIYEH-LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ +YE+ LI R EV + TP +V L + + P R +Y+P Sbjct: 264 ALAYVYENTLISR---EVRKELGTHSTPAYLVDYIVGRLSPWIEEI----PSDQRYVYEP 316 Query: 213 TCGTGGFLTDAMNHV-------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 CG GFL A+ + H + G +++ + + + + Sbjct: 317 ACGHAGFLVAAVRLLTSLLPTEQATPPHRRAYLRERIQGSDVDSFALEIARLSLTLTDIP 376 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + ++Q + DL L+NPPF K + + R Sbjct: 377 NPNGW----KLKQDDAFASDLLESAASGSRILLANPPFEK---------IEPARRDAYTR 423 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 +S + + ++ GG +V+ + L + A RR L + Sbjct: 424 QFRAPQFVSQAA-----EILHRAISALPSGGVFGVVVPQNLLHSSDAT----AFRRMLTD 474 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSN 412 E I P +F ++ + + I Sbjct: 475 KAEFEEICLFPDKMFNFADVESGILIGRK 503 >gi|270692011|ref|ZP_06222905.1| type I restriction-modification system DNA methylase [Haemophilus influenzae HK1212] gi|270316087|gb|EFA28100.1| type I restriction-modification system DNA methylase [Haemophilus influenzae HK1212] Length = 193 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 43/168 (25%), Gaps = 48/168 (28%) Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW-------------------- 504 S++ D + FGY ++ + RP R S +A L D Sbjct: 25 SQIFDNQDFGYYKVTIERPDRRSAQFTVENIASLRFDKALFEPMQYLYRQYGGQVYNAGF 84 Query: 505 ----------------------RKLSPLHQSFWLDILK------PMMQQIYPYGWAESFV 536 K L W +++ + + Sbjct: 85 LTQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAALFQTASKLLEHFGEQQFDDFNQ 144 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584 + KT K+ S + A NA D + V + P+ Sbjct: 145 FKQAVECRLKTEKIPLSATEKKAIFNAVSWYDENSAKVIAKTLKLKPN 192 >gi|315284447|ref|ZP_07872160.1| type I restriction-modification system, M subunit [Listeria marthii FSL S4-120] gi|313611908|gb|EFR86338.1| type I restriction-modification system, M subunit [Listeria marthii FSL S4-120] Length = 179 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 30/176 (17%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTR-----------SA 54 ++ + +W A +L G + + +L + L LE + Sbjct: 3 TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEKYKSMADKGQLSEAEL 62 Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103 V E +L+ ++ F + L N E Sbjct: 63 VEEYAKDRAYHGENLDKMIQSVLGYFVLPEHLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122 Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152 I + SD+ + +F T L E++ + + + F + + D Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMVALQKSD 178 >gi|251772061|gb|EES52631.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum] Length = 784 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 62/349 (17%), Positives = 108/349 (30%), Gaps = 108/349 (30%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +E+LI + + TPR ++ + +L +P TL DP G+ Sbjct: 314 AFEYLINK---SSKGEKGQYFTPRYIIDMCVKML----------NPQKHETLIDPAAGSC 360 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV---CVAGMLIRRLE 265 GF A+ HV + + E +P + A+ A + R L Sbjct: 361 GFPVHAIFHVWESILQEECLDKSHLFTIEKKPVQCEDYVHEKVFAIDFDEKAVRVGRTLN 420 Query: 266 SDPRRDLSKNIQQGSTL------------------------------SKDLFTGKRFHYC 295 D N+ +TL +K+ +F Sbjct: 421 L-IAGDGQTNVLHLNTLDYERWNEKTVEEAWLDVYGEGWKRLRKLRAAKNENRDFQFDIV 479 Query: 296 LSNPPFGKKWEKDK----------------DAVEKEHKN-----GELGRFGPGLPKI--- 331 ++NPPF ++ + V+ KN F L Sbjct: 480 MANPPFAGDIKETRILAKYDLASTVSLDKVKNVDPTDKNIVDAPDRTPTFPEALNASPTV 539 Query: 332 ----SDGSM---------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 +DG+ LF+ ++ GGR AIVL N + Sbjct: 540 IYKMADGTYRKIKVKHQHKVGRDILFIERNLQFIKP----GGRMAIVLPQGRFNN----A 591 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420 G+ +R ++ E+ I A+V L ++F T T + + + +G Sbjct: 592 GDKPLREYIAEHCRILAVVGLHGNVFKPHTGTKTSVLFVQRWNDDPTKG 640 >gi|325289835|ref|YP_004266016.1| RNA methylase [Syntrophobotulus glycolicus DSM 8271] gi|324965236|gb|ADY56015.1| RNA methylase [Syntrophobotulus glycolicus DSM 8271] Length = 701 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 111/357 (31%), Gaps = 50/357 (14%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 +F +F + A L ++ K P+ ++ +Y + R + Sbjct: 157 GLFSEFLEDDLKIQEADAECLLRVKKL-----GIPNERGKDLLGLVYMTISHRAARISN- 210 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 + TP +V + DP CG+G FL + Sbjct: 211 --GTYYTPGSIVEKLV-------PKGLHLVEREFPRILDPCCGSGNFLLTVFLALKSNLV 261 Query: 233 HHKIPPILV--------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283 +PP G +++ +C +L+ L + +IQ + L Sbjct: 262 QKGLPPGEAEKLLLEECIFGFDIDSTAVWLCRVNLLL--LCDTDFVPGNWHIQCDNALMG 319 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHL 342 +F + NPP+G + ++ R + S S +F+ + Sbjct: 320 HSKKISGKFDLIIGNPPWGSDFSGNELTEY---------RKRYATARASFDSFSIFIEYA 370 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L N G A +L S L +R+ LL+ IE+I L + F R Sbjct: 371 LKTL----NERGIVAYILPESIL----KVRTHLPVRKILLDETHIESIEKL-GNQFSRVF 421 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-----RIINDDQRRQILD 454 + + + ++Q+ N + + I + ++ +IL Sbjct: 422 APAISLLARKTEIHDSGHQIQIENIDEKRIISQKRFADHHLLFFNIWSSEREHRILK 478 >gi|282851931|ref|ZP_06261291.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1] gi|282556940|gb|EFB62542.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1] Length = 693 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 64/393 (16%), Positives = 123/393 (31%), Gaps = 82/393 (20%) Query: 73 VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAG 131 ++ G + + + N + I SF + KA E +S ++ + Sbjct: 265 LQTEGVTQLKPENLTSNDDEDDNDGQIIIRKIKSFLNKRKASQEKMKMITSLLSPIFTKR 324 Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF------------GSEVSEGAEDFMT 179 LL+K S I+ V ++ + L F E + + +T Sbjct: 325 LLWKNINGQSLIKSLYTDVYKDILPLLESDLQLDFTGKILNSLNDWVSIENDKQNDVVLT 384 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------A 228 PR + L L D+ ++D G+GGFL AM+ + Sbjct: 385 PRYITQLMVKLTHTDKDS----------YVWDTAMGSGGFLVSAMDIMIKDAKDKIQDSE 434 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 G EL + + V M++ D S N++ + + Sbjct: 435 KLKEKINQIKKHQLLGIELLGNIYILAVLNMILMG-------DGSSNMRNDDSHNVYKRL 487 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + L NPP+ + + F+ +++ Sbjct: 488 KFPANVFLLNPPYSAEGKG----------------------------FNFVKEAFSQMHS 519 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406 + L AGSG + +LEN+ + A + +P DLF ++ T Sbjct: 520 GY-----------GAVLIQENAGSGNGLPYTKEILENNTLVASIHMPNDLFNGKASVQTA 568 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +++ + V I+ +D + +N K Sbjct: 569 IYVFKVNDPHNEKKAVTFIDFSDDGYTRQNRKK 601 >gi|322383486|ref|ZP_08057262.1| type I restriction-modification system DNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152225|gb|EFX45055.1| type I restriction-modification system DNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 388 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 75/244 (30%), Gaps = 51/244 (20%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 F TP V ++ E + +P+ G+G FL H+ Sbjct: 33 GFNGGAFFTPTHVARFMVGVI-----RNLYEGFPENMRVLEPSVGSGVFL----EHL--- 80 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 PP E++ + V ++ G+ L D Sbjct: 81 ------PPDAEITALEIDETSARVTQ------------LIYPHADVILGNALDHDR--RD 120 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + NPP+G+ E +K+ + K G F+ Sbjct: 121 YYDLVIGNPPYGETVETEKEYLTLSKKKGIY---------RGKSEAAFIELAIRAARP-- 169 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLW 408 GG A +L + F G A ++R+ + E A + LP + F T I T + Sbjct: 170 --GGYIAFILPTGISFAGHA----KKVRKLMYETCWQVATIMLPGETFMHTGTTIPTQII 223 Query: 409 ILSN 412 IL Sbjct: 224 ILRK 227 >gi|291545710|emb|CBL18818.1| Type I restriction-modification system methyltransferase subunit [Ruminococcus sp. SR1/5] Length = 198 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 13/115 (11%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179 I +L LL K+ + I + + + ++YE+L+ + F T Sbjct: 85 DDAIFKLPTPLLLSKVVDSLDEIYKLMNEIQTADVRGDVYEYLLSKIAQSG--RNGQFRT 142 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 PR ++ + ++ P + DP+CGT GFL A ++ + Sbjct: 143 PRHIIRMMVEMM----------DPSSDEIICDPSCGTSGFLVAAGEYLKEKRKEE 187 >gi|294783025|ref|ZP_06748349.1| type IIS restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA] gi|294479903|gb|EFG27680.1| type IIS restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA] Length = 682 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 75/472 (15%), Positives = 153/472 (32%), Gaps = 97/472 (20%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 TL +T +N+ + S K IF ++ G+ YKI Sbjct: 295 RTLKNTLLSDNINKPVNGESQ-LKRIFSKI--------VDDLGIYYKI------------ 333 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + G + + +TP V + L D+ Sbjct: 334 GLTTDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVANFLVKLARVNKDS----------Y 383 Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257 ++D G+ G L AMN + + G E+ + + + Sbjct: 384 VWDFATGSAGLLVAAMNEMLIDAKDKIKSPQELEQKTLKIKAEQLLGLEVLSNIYMLAIL 443 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M++ D S NI +L N FG +E+K Sbjct: 444 NMILMG-------DGSSNILNKDSLRD----------FNGNYAFG-----------EENK 475 Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 F P ++G+ M+F+ + +E G AAI++ S G + E Sbjct: 476 KFPATAFVLNPPYSAEGNGMIFVEKALSLMEK-----GYAAIIIQHSA---GSGKAKEYN 527 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 + +LE + + A + +P DLF +++ TY+++ + ++ V+ I+ ++ + Sbjct: 528 --KKILEKNTLLASIKMPLDLFIGKSSVQTYIYVFRIGEVHQKDEIVKFIDFSNDGYTRS 585 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 + K + D R ++ M+D FG ++ + G Sbjct: 586 DRKKASNNLKD----------TDRAKERYQEMVDLVRFGKSKLNIFTEKEY-----YEGY 630 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 E W + +P+ ++ K + + + ++ K Sbjct: 631 IDPENGSDWNQSTPVDTKPTIEDFKKTVADYLAWEVSNLLKNTERENESLKK 682 >gi|331000342|ref|ZP_08324023.1| hypothetical protein HMPREF9439_01665 [Parasutterella excrementihominis YIT 11859] gi|329572138|gb|EGG53803.1| hypothetical protein HMPREF9439_01665 [Parasutterella excrementihominis YIT 11859] Length = 156 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 6/124 (4%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66 + LA IWK A ++ G + ++ IL + L + L + Sbjct: 2 NKQELAAQIWKGANEMRGKIEAGNYKDFILGLLFYKFLS----ENEVKYLKDNLGASKED 57 Query: 67 IDLESF--VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 + E + +Y E S++ + N+ S A+ S+ E+ FS+ Sbjct: 58 LAAEDVKTYLIDNLGYYIPEENLFSSMMGKDKGMNIGSLSAALSNFNLVTLENPLFSNIF 117 Query: 125 ARLE 128 L Sbjct: 118 RSLN 121 >gi|254235709|ref|ZP_04929032.1| hypothetical protein PACG_01646 [Pseudomonas aeruginosa C3719] gi|126167640|gb|EAZ53151.1| hypothetical protein PACG_01646 [Pseudomonas aeruginosa C3719] Length = 603 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 33/263 (12%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + F TP + L + + DP CG FL + Sbjct: 114 EGYRKKLAMFFTPVSLTEGLLDDLAEQGTDFGS------FSFMDPACGGAAFLAPIALRM 167 Query: 228 ADCGSHHK-------IPPILVPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQ 278 + +G +L+ + M + + NI Sbjct: 168 RKALATKGLPPIKLLKHVEKHLYGTDLDKSLCELSKHFLCMALHAEIQKTSYIPTFNIHH 227 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 ++L++ + R + NPP+ K ++ + + + + + + LF Sbjct: 228 ANSLTELSASLGRVDVVVCNPPYRKMTAEELEPLRATYTDV--------IEAQPNLYCLF 279 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTD 396 + L GGRAA+V +S L +G S +R++L+ + +E +V+ Sbjct: 280 ITLCVRLLR----NGGRAALVTPTSFL----SGQYFSRLRKFLMRHTDVEHIGMVSDRKG 331 Query: 397 LFFRTNIATYLWILSNRKTEERR 419 +F T + IL R E+R Sbjct: 332 VFIDVEQETAMTILRRRAEEDRT 354 >gi|224024623|ref|ZP_03642989.1| hypothetical protein BACCOPRO_01350 [Bacteroides coprophilus DSM 18228] gi|224017845|gb|EEF75857.1| hypothetical protein BACCOPRO_01350 [Bacteroides coprophilus DSM 18228] Length = 682 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 65/390 (16%), Positives = 128/390 (32%), Gaps = 62/390 (15%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + G + + +TP V L L D+ ++D G Sbjct: 341 GKLFNEMYGWLGFSQDKLNDVVLTPAYVAKLLVKLARVNKDS----------YVWDFATG 390 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L AMN + + G EL P + + + M++ Sbjct: 391 SAGLLVAAMNEMLIDAKNNIKSPEELAKKELEIKSKQLLGIELLPSVYMLAILNMILMG- 449 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 D S NI +L F G +G ++DK + F Sbjct: 450 ------DGSSNILNEDSLKD--FDGN----------YGYSDKQDKFPADA---------F 482 Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P ++G+ M F+ + G AAI++ S G + E R +L+ Sbjct: 483 VLNPPYSANGNGMNFVEKALGMMNR-----GYAAIIIQGSA---GTGKATEYNKR--ILK 532 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + + A + +P DLF +N+ TY+++ + ++ V+ I+ ++ + N K Sbjct: 533 RNTLLASIKMPIDLFIGKSNVQTYIYVFRVNEAHKKDEIVKFIDFSNDGYTRTNRKKASC 592 Query: 443 IIND-DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 + D D ++ + V+ S++ Y + + + Sbjct: 593 NLRDTDHAKERYEEVVNLVRFGKSKLHYLTDKEYYEDTIDPESGKDWNQTAPIDTKPTLQ 652 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + +S ++LK Q G Sbjct: 653 DFKKTVSDYLAWEVSNLLKRKNSQEDSLGK 682 >gi|291276677|ref|YP_003516449.1| putative type I restriction-modification system M protein [Helicobacter mustelae 12198] gi|290963871|emb|CBG39707.1| putative type I restriction-modification system M protein [Helicobacter mustelae 12198] Length = 561 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 105/299 (35%), Gaps = 58/299 (19%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP V L LL +D Y+P G G + + Sbjct: 109 YSTPLQVNRLLIGLLQIEEDDKI----------YNPCYGMGSIFLSLVQ----------M 148 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292 + +G+EL+P + ++++ E + L F + F Sbjct: 149 QKNIELYGEELDPRLSQIAF--LILQICEIPTHG-----LYVNDLLKSPRFVDGDQFQIF 201 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPN 351 L NPP D + RF P G ++FL+H + L+ Sbjct: 202 DKVLCNPPLYAHLGIDF--------LKKDQRFHPIGAIAKHYPELIFLIHSLSHLKKCG- 252 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 ++ + L + + E+++R L + +I +I+ LP ++F N + ++ Sbjct: 253 -----VFIVRNQVL---QKNASEAKVRSRLCKQRMIRSIIELPKNIFPHQNNDFSIVVIM 304 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 ++ INA+D + R K + IL+I+ ++ GK+S++ Sbjct: 305 PN-----SEEILHINASDEFFYEREG--KYNRLK--NIEVILEIFFQQKEGKYSKITKT 354 >gi|189462166|ref|ZP_03010951.1| hypothetical protein BACCOP_02848 [Bacteroides coprocola DSM 17136] gi|189431139|gb|EDV00124.1| hypothetical protein BACCOP_02848 [Bacteroides coprocola DSM 17136] Length = 712 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 64/466 (13%), Positives = 125/466 (26%), Gaps = 120/466 (25%) Query: 44 LECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGST------- 94 + + + + + + ++ E F + + L Sbjct: 178 ISDLI--KKDKLVNERKSLKDLILEMEDEVLAGAGVDVFEEVFKLIFTKLYDEMESGRKP 235 Query: 95 --NTR-NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHP 147 N N + + +F+ E A +L + S ++ Sbjct: 236 DRNLEFRNYGDTETELKEKLQTLFDQAKEKWQGVFTEDAKILLTPSHLSVCVASLQDVKL 295 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 V+ +E+LI + + TPR V+ + +L +P Sbjct: 296 FNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------NPKADE 342 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV---- 254 + D G+ GF + HV K E +P A+ Sbjct: 343 KMIDTAAGSCGFPVHTIFHVWQKILEAKGLKRSHLFTLEEKPAECSDYVQNNVFAIDFDE 402 Query: 255 ---------------CVAG-MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------- 291 M + L+ + + K+ T S+ K+ Sbjct: 403 KAVRVARTLNLIAGDGQTNVMHLNTLDYERWDETVKDENWSDTYSEGWKKLKKMRAEKNS 462 Query: 292 -----FHYCLSNPPFGKKWEKDKDAVEKEHKN-----------------GELGRFGPGLP 329 F ++NPPF ++ + + + F L Sbjct: 463 NRDFTFDIVMANPPFAGDVKESRILAKYDLSRSVSLEKLKNVPSGATITQGEPTFPEALA 522 Query: 330 KIS-------DG---------------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 DG +LF+ + L+ GGR AIVL N Sbjct: 523 NSGETVYQMADGTFRKTKLKQASNMSRDVLFVERNIDFLKS----GGRMAIVLPQGRFNN 578 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412 S + +R ++ + I A++ L ++F T T + + Sbjct: 579 ----SSDKVLREYIADRCRILAVIGLHGNVFKPHTGTKTSVLFVQK 620 >gi|293189377|ref|ZP_06608100.1| putative modification enzyme transmembrane protein [Actinomyces odontolyticus F0309] gi|292821840|gb|EFF80776.1| putative modification enzyme transmembrane protein [Actinomyces odontolyticus F0309] Length = 151 Score = 72.3 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 20/158 (12%) Query: 30 DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89 + +L L E E R+AV + +N+ A Y E LS Sbjct: 2 QYRDPVLGLVFLAYAEDRFESVRAAVDAGATSRNPANVAD----YRAKSVLYVPDESRLS 57 Query: 90 TLGS----TNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 L + + ++ I + + K + +LE++ L ++ + F+ Sbjct: 58 YLVNLPEGKDVGKATDAAIKAIEETNLELKDVLPR-----GSQKLERS-TLIELLRLFA- 110 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 P + IYE + F ++ +G + TP Sbjct: 111 --PLPKQLEGDAFGFIYEDFLSNFAAQEGKGGGKYFTP 146 >gi|156308544|ref|XP_001617681.1| hypothetical protein NEMVEDRAFT_v1g225887 [Nematostella vectensis] gi|156195235|gb|EDO25581.1| predicted protein [Nematostella vectensis] Length = 336 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 98/321 (30%), Gaps = 92/321 (28%) Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA-----------------------DCGSHHKIPP 238 +P + D CG+GGFL + HV + + Sbjct: 6 NPNEKTRVLDXACGSGGFLVMVLEHVRKQIAKELYPDLEDVLLAEKFNTYEVNERVRQYA 65 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------- 289 +G + +P+ M++ D NI ++L + Sbjct: 66 ETNIYGFDFDPDLKKAARMNMVMAG-------DGHANIFHVNSLDYPDWEDPNELNKIKA 118 Query: 290 ---------------------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 +F +NPPFG K + +K+ +K + Sbjct: 119 SIKQSLERMADIDNNYTDDARGKFDMIFTNPPFGAKVKVEKEIADKYDLSKY-------- 170 Query: 329 PKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 SD +LF+ L+ GG+ AIVL L N +R W+LEN I Sbjct: 171 ---SDAPEVLFIEACYKLLKP----GGKMAIVLPDGILGNPNTLP----VREWILENFKI 219 Query: 388 EAIVALPTDLFFR-TNIATYLWILSNR--------KTEERRGKVQLINATDLWTSIRNEG 438 A V L + F + L L + + + +V + A L R Sbjct: 220 LASVDLAVEAFLPQVGVQASLLFLQKKTDNDRNIARETDEDYEVFMAIAEKLGKDRR--- 276 Query: 439 KKRRIINDDQRRQILDIYVSR 459 + D+ +IL +R Sbjct: 277 GNPIYVRDEDGAEILFTVDNR 297 >gi|282915750|ref|ZP_06323520.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus D139] gi|284023308|ref|ZP_06377706.1| type I restriction-modification system M subunit [Staphylococcus aureus subsp. aureus 132] gi|284023441|ref|ZP_06377839.1| type I restriction-modification system M subunit [Staphylococcus aureus subsp. aureus 132] gi|282320379|gb|EFB50719.1| type I site-specific deoxyribonuclease methyltransferase subunit [Staphylococcus aureus subsp. aureus D139] Length = 51 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 16/40 (40%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE 45 A L +W A DL G+ ++F IL R L Sbjct: 9 QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLS 48 >gi|150026174|ref|YP_001297000.1| modification methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|150026184|ref|YP_001297010.1| modification methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772715|emb|CAL44198.1| Probable modification methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772725|emb|CAL44208.1| Probable modification methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 754 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 63/391 (16%), Positives = 131/391 (33%), Gaps = 62/391 (15%) Query: 86 YSLSTLGSTNTRNNLESYIASFSDNA--KAIFEDFDFSSTIA--RLEKAGLLYKICKNFS 141 ++L+ L I + S K F F + LE ++ KI KN Sbjct: 215 HNLNNAILEAITRQLADKINNLSKGYSWKD---RFSFIKNVDYSLLEYKKIITKIEKNI- 270 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + + ++ Y+ ++R G ++ +TP + L L + + Sbjct: 271 -FKPFQNDEKQDILGKAYKIFLKRAGKIDNKN--IILTPDHMKSLMVELARLNVNDV--- 324 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HKIPPILVPHGQELEPETHAVCVA 257 + D GTGGFL +AM + ++ K G E++ A+ + Sbjct: 325 -------VLDTCTGTGGFLMEAMEVLIKKANNNETLIKNIKENQLIGFEVDSVLFALACS 377 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M + D N+ S+L D + + + K + ++ Sbjct: 378 NMFLHG-------DGRTNLLFRSSLLDDKNENIINNKDKDLLNYINSLKPTKCIINPPYE 430 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 +F L+ G+ I++ + L + G Sbjct: 431 TNNSIKFT-----------------LQALK-YLEQNGKLVIIMPTPTLTQNQNGITAD-- 470 Query: 378 RRWLLENDLIEAIVALPTDLFFRT--NIATYLWILSNRKTEERRGKVQLINA-TDLWTSI 434 +L+ ++ ++ +P +LF + T ++ + + +V N D + SI Sbjct: 471 ---ILKIAKLDFVIKMPYNLFAEQKRTVNTSVFGFTKT-PHNQNDEVLFYNLEEDGFVSI 526 Query: 435 RNEGK--KRRIINDDQRRQILDIYVSRENGK 463 +++G+ K +D R I+D + + K Sbjct: 527 QHKGRVDKFNKW-EDIRSNIVDSIFNSKEAK 556 >gi|67459769|ref|YP_247393.1| Type I restriction-modification system methyltransferase subunit [Rickettsia felis URRWXCal2] gi|67005302|gb|AAY62228.1| Type I restriction-modification system methyltransferase subunit [Rickettsia felis URRWXCal2] Length = 159 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 24/172 (13%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------KRFHYCLSNPPFGKK-WEKDK 309 +++ + IQQ TL + +F +N PF + +K Sbjct: 1 MNTVLQGYD------GHSEIQQIDTLRNPYYISSKTSQQLKFDIIATNMPFSQTITKKTI 54 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + +N + G+ ++G ++H L+ GR A+V+ LF Sbjct: 55 KNGKTITENHIAPLYYNGIA-KNNGDAACVLHCLQNLKES----GRMALVVPEGFLFRKD 109 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS-NRKTEERR 419 S +R++LL ++ +++LP F T + T + + K ++++ Sbjct: 110 TSS----VRQFLLSKAKLQLVISLPQSTFLPYTGVKTSILYFTDAHKPDKQK 157 >gi|88810721|ref|ZP_01125978.1| type I restriction enzyme, modification chain [Nitrococcus mobilis Nb-231] gi|88792351|gb|EAR23461.1| type I restriction enzyme, modification chain [Nitrococcus mobilis Nb-231] Length = 151 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----PTRSAVREK 58 + L + +W++ ++L G + + +L ++ + + P S + Sbjct: 1 MALKKSQLYSSLWQSCDELRGGMATSQYKDYVLTLLFMKYISDKRDSLIEVPRGSRFADM 60 Query: 59 YLAFGGSNIDLESFVKVAGY 78 G I + Y Sbjct: 61 VALRGDKEIGDDLLGDAYEY 80 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 128 EKAGLLYKIC--KNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 +K L ++ F+ + + D ++ + YE+L+R F +E + F TP + Sbjct: 43 DKRDSLIEVPRGSRFADMVALRGDKEIGDDLLGDAYEYLMRHFATESDKSKGQFYTPAEA 102 Query: 184 VH 185 Sbjct: 103 SR 104 >gi|320450645|ref|YP_004202741.1| N-6 DNA methylase family [Thermus scotoductus SA-01] gi|320150815|gb|ADW22193.1| N-6 DNA methylase family [Thermus scotoductus SA-01] Length = 1093 Score = 71.5 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 92/280 (32%), Gaps = 43/280 (15%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S FE+ FS + + L L ++ + + + + V+ +IY++ + Sbjct: 333 SQAYAEPFEEETFSWILETNGEMDLALQRLILRVNAYDF--SGLSEEVLGDIYQNFL--- 387 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + +F TP++VV L + + + DP CG+G FL ++H Sbjct: 388 PPDKRKRLGEFYTPKEVVDLILR------ETALAHGESLYPEVLDPACGSGSFLVRYLHH 441 Query: 227 VADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + G +L P A L+ + ++ ++ Sbjct: 442 RMEDAKARGVHLDSEALSRSIWGFDLNP-FAAYVSMFQLLWGFLRLKKGKPEVHVYNLNS 500 Query: 282 LSKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 L D K + Y + NPP+ + ++ G+ G Sbjct: 501 LLDDSDIAFLVKRSPGEEARDEKEWDYVVGNPPYIRAERAKYGQAIRDLYREVWGQNG-- 558 Query: 328 LPKISDGSMLFLMHLA----NKLELPPNGGGRAAIVLSSS 363 D +LFL + GG+ +V+S Sbjct: 559 -----DTGLLFLWRAMRGSGATAKPWVKKGGKLGMVVSGG 593 >gi|291527610|emb|CBK93196.1| Type I restriction-modification system methyltransferase subunit [Eubacterium rectale M104/1] Length = 941 Score = 71.5 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 95/317 (29%), Gaps = 54/317 (17%) Query: 136 ICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 I F I + P M Y + ++ S ++ +TP+ + L + Sbjct: 323 IFSIFENIVMKMKLHPKIDIMGTFYTVFL-KYASGDAKDKGIVLTPKHITELFCDIA--- 378 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----------ADCGSHHKIPPILV-PH 243 + + + D GTG FL A+ + D K Sbjct: 379 -EHYLGKKLNEKTKVLDICTGTGAFLISALARMDSNIDALTISEDEKKERKAYVRSNCLI 437 Query: 244 GQELEPETHAVCVAGMLIRRLESDP----------RRDLSKNIQQGSTLSKDLFTGKRFH 293 G E EPE ++ A M +++NI+ ++ Sbjct: 438 GVEREPEMFSLAYANMRFHGDGRSNLYACSSLLKHNGIVNENIKTKEKITLKEELESLEE 497 Query: 294 ---YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + NPP+ +K+ E + G+ + L Sbjct: 498 KPIVGMVNPPYAL-LNSEKNDKSGEKQTGQSE-----------------LDFVYSLLEYL 539 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408 GG +++ S F+ +S +R+ +LE + A + +P LF + T + Sbjct: 540 KEGGIGIVIIPMSCAFS----KTDSLMRKEILEKHTLLATMTMPARLFQDSDVGVNTCIM 595 Query: 409 ILSNRKTEERRGKVQLI 425 + + + + Sbjct: 596 VFRAHIPHKDSSQSVFL 612 >gi|224418075|ref|ZP_03656081.1| restriction modification enzyme [Helicobacter canadensis MIT 98-5491] gi|253827404|ref|ZP_04870289.1| restriction-modification enzyme [Helicobacter canadensis MIT 98-5491] gi|313141612|ref|ZP_07803805.1| restriction modification enzyme [Helicobacter canadensis MIT 98-5491] gi|253510810|gb|EES89469.1| restriction-modification enzyme [Helicobacter canadensis MIT 98-5491] gi|313130643|gb|EFR48260.1| restriction modification enzyme [Helicobacter canadensis MIT 98-5491] Length = 1322 Score = 71.5 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 69/487 (14%), Positives = 142/487 (29%), Gaps = 53/487 (10%) Query: 77 GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136 +F N + + S N N+L+ + N + F+ +L ++ Sbjct: 337 DNAFSNRYKDTPSRNNIENIFNDLKYFQNG-DFNFLEVHNKELFNKNF------NILLQV 389 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 I+ D + + +E I + + TP +V+ L D Sbjct: 390 VLMLEDIKFSEDNSQF--LGDFFESYIHDM----PQHEGQYFTPVPLVNFIIYSLPVLKD 443 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 + + D CG G FL++ S + G + + + Sbjct: 444 SR----------VLDFACGAGHFLSE--------YSKINNTYEVQYKGIDKDQRLAKISA 485 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 + D I+ L + + +SNPP+ + Sbjct: 486 IASFMYGKTMD--------IKYDDALKHGIIENDSINTIISNPPYSVDG---FLRTLNKT 534 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + F + +D F K G ++VL SS N + + Sbjct: 535 EKESYTLFNKNISLDTDKIECF---FIEKASQVLESYGLLSLVLPSSIFSNNDTITI--Q 589 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 R LL + I AI FF+T + + + +K ++ Q A + I Sbjct: 590 TREILLRDFYIIAICEFGNQTFFKTGTQP-IILFAIKKLRDKNITTQETRAQYFYKLIME 648 Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI--KVLRPLRMSFILDKTG 494 + ++ ++L Y + K+ +M++ FG + +I Sbjct: 649 DKTDNPY--KEELDELLHSYANFMRYKY-KMIEKLFFGVLENIDSIHHNNFKEYIQTYND 705 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 + + E + K + + + + I + +E +K Sbjct: 706 ILKKEKEKYNSKTKKYKDKYPFTPSQTLQEFIKQKEAEKFLYFCYALDSEPLIIKAPKDN 765 Query: 555 SFIVAFI 561 F+ Sbjct: 766 EKQKKFL 772 >gi|330904327|gb|EGH34899.1| hypothetical protein PSYJA_40355 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 67 Score = 71.5 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 19 AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78 A+ L G ++F + I L+R E V + + G S E+FV Sbjct: 1 ADILRGKMDASEFKEYIFGMLFLKRCSDVFEERYEEVVAQEIRAGKS--QAEAFVSAENP 58 Query: 79 SFY 81 +Y Sbjct: 59 RWY 61 >gi|320354541|ref|YP_004195880.1| hypothetical protein Despr_2450 [Desulfobulbus propionicus DSM 2032] gi|320123043|gb|ADW18589.1| protein of unknown function DUF450 [Desulfobulbus propionicus DSM 2032] Length = 713 Score = 71.5 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 131/477 (27%), Gaps = 122/477 (25%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------ 97 ++ ++ + +K L ++ E F + + L Sbjct: 180 IDDLIKLDKLVNEKKSLKDLILEMEDEVLANAGVDVFEEMFKLIFTKLYDELEGGRDKKR 239 Query: 98 ----NNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLL-YKICKNFSGIELHPDTV 150 N + +F+ + K L + S +E Sbjct: 240 HLVFKNYGDTETELKAKIQDLFDKACAKWEGVFPENVKIDLTPSHLAVCVSSLEKVKLFN 299 Query: 151 PDRVMSN-IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + + + +E+LI + + TPR V+ + +L +P TL Sbjct: 300 SNLEVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------NPQAHETL 346 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE---------THAV---CVA 257 D G+ GF + +V + + + +P A+ A Sbjct: 347 IDTAAGSCGFPVHGIFYVWEQIMKEEGLAKSHLFTTDKKPARCEDYVRDKVFAIDFDEKA 406 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKR---------------------- 291 + R L D N+ +TL + + + Sbjct: 407 VRVGRTLNL-IAGDGQTNVLHLNTLDYERWDEKTSDETWIDIYGEGWKKLRKLRLDKTSN 465 Query: 292 ----FHYCLSNPPFGKKWEK---------------------DKDAVEKEHKNGELGRFGP 326 F ++NPPF ++ D + F Sbjct: 466 RDFGFDVLMANPPFAGDIKETRILAKYDLARSVRLDKIGKVDPKDKNIVTAHDRAPSFTE 525 Query: 327 GLPKI-------SDGSM---------------LFLMHLANKLELPPNGGGRAAIVLSSSP 364 L +DG+ LF+ N L+ GGR A+VL Sbjct: 526 ALHASHEVIYQMADGTYRKVKVKNQNKVGRDILFIERNLNFLKP----GGRMAVVLPQGR 581 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420 N + + ++R +L + I A+V L ++F T T + + + + G Sbjct: 582 FNN----ASDKDLREYLAAHCRILAVVGLHGNVFKPHTGTKTSVLFVQKWNDDSKAG 634 >gi|283956930|ref|ZP_06374403.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283791656|gb|EFC30452.1| type I restriction-modification system, M subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 249 Score = 71.5 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 23/210 (10%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93 L+ L+ T +I E F + + + S Sbjct: 32 LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89 Query: 94 TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L Y+ +F +D+ K+I F R+ L ++ I Sbjct: 90 EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + +YE L++ GS+ + +F TPR ++ ++ P + Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 YDP+CG+ GFL ++ H+ Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKAN 227 >gi|159027015|emb|CAO86735.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 678 Score = 71.5 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 51/348 (14%), Positives = 110/348 (31%), Gaps = 64/348 (18%) Query: 120 FSSTIARLEKAG-LLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 + I ++E L ++ + + ++ + G + + Sbjct: 298 LTENINKVENGESQLKRVFSKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDV 357 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227 +TP + L L D+ ++D G+ G L AMN + Sbjct: 358 VLTPSYIATLLVKLARVNKDS----------YVWDFAAGSAGLLVAAMNEMLVDAKNNIT 407 Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + G EL + + + M++ D S NI ++ Sbjct: 408 SPQELTQKEIKIRTEQLLGLELLSSVYMLAILNMILMG-------DGSSNILNKDSIKD- 459 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLAN 344 + + +N F F P ++G+ M F+ Sbjct: 460 --FDGNYGFGQTNSKFPADA------------------FVLNPPYSANGNGMNFVEKALG 499 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403 + G AAI++ +S G + E + +LE + A + +P DLF +++ Sbjct: 500 MMNK-----GYAAIIIQNSA---GSGRAKEYN--KKILEKHTLLASIKMPIDLFIGKSSV 549 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 T +++ + + V+ I+ ++ + N K + D + Sbjct: 550 QTNIYVFKVNEKHHKDEIVKFIDFSNDGYTRTNRKKSSNNLKDTDCAK 597 >gi|303235246|ref|ZP_07321864.1| conserved domain protein [Finegoldia magna BVS033A4] gi|302493560|gb|EFL53348.1| conserved domain protein [Finegoldia magna BVS033A4] Length = 154 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 16/113 (14%) Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162 D+ K +FED D +T ++L EK L I I + + YE+L Sbjct: 23 DDIKGLFEDVD--TTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYL 80 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 I + S + +F TP+ V L L++D ++ K +YDPTCG Sbjct: 81 IFNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTSINK--------VYDPTCG 125 >gi|256848825|ref|ZP_05554259.1| type II restriction-modification system methylation subunit [Lactobacillus crispatus MV-1A-US] gi|256714364|gb|EEU29351.1| type II restriction-modification system methylation subunit [Lactobacillus crispatus MV-1A-US] Length = 688 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 77/336 (22%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + +TPR + ++ L D+ ++D G+ GFL AM+ Sbjct: 367 SIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAMGSAGFLVSAMDI 416 Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + G E+ + + V M++ D S N Sbjct: 417 MVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG-------DGSSN 469 Query: 276 IQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + G++ L K+ +T + L NPP+ + + Sbjct: 470 MVNGNSHELYKN-YTQFPANVFLLNPPYSAEGKG-------------------------- 502 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +F+ +++ G AAI++ + + +L+N+ + A + + Sbjct: 503 --FIFVQEALSQMTK-----GYAAIIIQENAGSGNGLPYT-----KNILKNNTLVASIHM 550 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRR----IIN 445 PTDLF ++ T +++ + E V ++ + D +T + + G+K Sbjct: 551 PTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQKVNLRDTDHA 610 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 ++ +++ I ++ I + Sbjct: 611 KERYEEVVAIVSDKKPKTNYYTERNHKVIKDTITLE 646 >gi|284053228|ref|ZP_06383438.1| type I restriction enzyme M protein [Arthrospira platensis str. Paraca] Length = 122 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 ++K A+ L G+ + +D+ V L L+ + E + + E+Y +S Sbjct: 42 EAELFKAADKLRGNMEPSDYKHVALGLIFLKHICDRFETRQRELAEEY-----PEGVEDS 96 Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTR 97 A F+ S + + Sbjct: 97 DEYTAENVFWVPQAARWSHPQANAKQ 122 >gi|262046554|ref|ZP_06019515.1| type II restriction-modification system methylation subunit [Lactobacillus crispatus MV-3A-US] gi|260573003|gb|EEX29562.1| type II restriction-modification system methylation subunit [Lactobacillus crispatus MV-3A-US] Length = 688 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 77/336 (22%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + +TPR + ++ L D+ ++D G+ GFL AM+ Sbjct: 367 SIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAMGSAGFLVSAMDI 416 Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + G E+ + + V M++ D S N Sbjct: 417 MVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG-------DGSSN 469 Query: 276 IQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + G++ L K+ +T + L NPP+ + + Sbjct: 470 MVNGNSHELYKN-YTQFPANVFLLNPPYSAEGKG-------------------------- 502 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +F+ +++ G AAI++ + + +L+N+ + A + + Sbjct: 503 --FIFVQEALSQMTK-----GYAAIIIQENAGSGNGLPYT-----KNILKNNTLVASIHM 550 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRR----IIN 445 PTDLF ++ T +++ + E V ++ + D +T + + G+K Sbjct: 551 PTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQKVNLRDTDHA 610 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 ++ +++ I ++ I + Sbjct: 611 KERYEEVVAIVSDKKPKTNYYTERNHKVIKDTITLE 646 >gi|256843430|ref|ZP_05548918.1| type II restriction-modification system methylation subunit [Lactobacillus crispatus 125-2-CHN] gi|293379931|ref|ZP_06626038.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1] gi|256614850|gb|EEU20051.1| type II restriction-modification system methylation subunit [Lactobacillus crispatus 125-2-CHN] gi|290923507|gb|EFE00403.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1] Length = 688 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 77/336 (22%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + +TPR + ++ L D+ ++D G+ GFL AM+ Sbjct: 367 SIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAMGSAGFLVSAMDI 416 Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + G E+ + + V M++ D S N Sbjct: 417 MVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG-------DGSSN 469 Query: 276 IQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + G++ L K+ +T + L NPP+ + + Sbjct: 470 MVNGNSHELYKN-YTQFPANVFLLNPPYSAEGKG-------------------------- 502 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +F+ +++ G AAI++ + + +L+N+ + A + + Sbjct: 503 --FIFVQEALSQMTK-----GYAAIIIQENAGSGNGLPYT-----KNILKNNTLVASIHM 550 Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRR----IIN 445 PTDLF ++ T +++ + E V ++ + D +T + + G+K Sbjct: 551 PTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQKVNLRDTDHA 610 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 ++ +++ I ++ I + Sbjct: 611 KERYEEVVAIVSDKKPKTNYYTERNHKVIKDTITLE 646 >gi|294786304|ref|ZP_06751558.1| conserved hypothetical protein [Parascardovia denticolens F0305] gi|294485137|gb|EFG32771.1| conserved hypothetical protein [Parascardovia denticolens F0305] Length = 562 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 46/245 (18%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + L DP CGTGGFL ++ + + + +G +L+P + A M Sbjct: 46 KDKVLLDPACGTGGFLFESYRTLLSNASDEQRDEIRTWAHHNLYGVDLDPINVKLSRALM 105 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF-------------TGKRFHYCLSNPPFGKKWE 306 + +D S NI G +L + + + L+NPPFG+K + Sbjct: 106 I-------GAKDGSTNIVLGDSLREQKWGEFPMFPPVIGSEADGSYDVVLTNPPFGEKLK 158 Query: 307 ------KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 K +H NG ++ ++F+ L GGR IVL Sbjct: 159 IRTTDAKRAKYTICKHTNGGANSEQYADTELG---LVFMERAYRLLAE----GGRLGIVL 211 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR 419 + F+ R+W+ ++ + ++ +P + F T ++++ + + Sbjct: 212 PETYFFSTSYRW----FRQWVDQHFDVIGVMNVPMEAFQGFCRAKTNFYVMTKK---TTK 264 Query: 420 GKVQL 424 GKV L Sbjct: 265 GKVIL 269 >gi|238898226|ref|YP_002923907.1| putative S of type II restriction endonuclease, N6_Mtase domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465985|gb|ACQ67759.1| putative S of type II restriction endonuclease, N6_Mtase domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 679 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 64/377 (16%), Positives = 124/377 (32%), Gaps = 82/377 (21%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 + TL +T +N+ I S K IF ++ G+ YKI Sbjct: 292 IRTLQNTLMTDNINKVINGESQ-LKRIFTKI--------VDDLGIYYKI----------- 331 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + ++ + G + + +TP V L L D+ Sbjct: 332 -GLATDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLVKLARVNKDS---------- 380 Query: 208 TLYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCV 256 ++D G+ G L AMN + S G EL + + + Sbjct: 381 YVWDFATGSAGLLVAAMNEMLIDAKNSITSPEALRSKEIRIKAEQLLGLELLSSVYMLAI 440 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 M++ D S NI ++L+ ++ + ++ F Sbjct: 441 LNMILMG-------DGSSNILNKNSLTD---FDGKYGFGQTDKHFPANA----------- 479 Query: 317 KNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 F P + G+ M+F+ + + G AAI++ S Sbjct: 480 -------FVLNPPYSAQGNGMVFVEKALSMMNS-----GYAAIIIQGSA-----GSGKAK 522 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 EI + +L+ + A + +P DLF +++ TY+++ + R V+ I+ ++ + Sbjct: 523 EINQKILKKHTLIASIKMPIDLFIGKSSVQTYIYVFKVGEAHHRDEMVKFIDFSNDGYTR 582 Query: 435 RNEGKKRRIINDDQRRQ 451 N K + D + Sbjct: 583 TNRKKASNNLKDTDHAK 599 >gi|301301104|ref|ZP_07207262.1| N-6 DNA Methylase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851300|gb|EFK79026.1| N-6 DNA Methylase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 694 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 95/292 (32%), Gaps = 69/292 (23%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E + + +TPR V L L M ++D G+GGFL AM+ Sbjct: 372 SIENDKQNDVVLTPRYVTKLMVKL----------TRTDMNSYVWDTAMGSGGFLVSAMDE 421 Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + G EL + + V M++ D + Sbjct: 422 MFKDAKEKIQDKKKLEEKLEHIKKEQLLGVELLGNIYILAVLNMILMG-------DGASK 474 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 ++ G + + L NPP+ + Sbjct: 475 MENGDSHKIYDNLEFPANVFLLNPPYSADGKG---------------------------- 506 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALP 394 F+ +K++ + L AGSG + +L+++ + A + +P Sbjct: 507 FNFVAEAFSKMQKGY-----------GAILIQENAGSGAGLPYTKKILDHNTLVASIHMP 555 Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 DLF +++ T +++ K + + V I+ ++ S +N K + +N Sbjct: 556 NDLFNGKSSVQTAIYVFKVNKPHDVKKAVTFIDFSEDGYSRQNRKKASQEVN 607 >gi|297585238|ref|YP_003701018.1| N-6 DNA methylase [Bacillus selenitireducens MLS10] gi|297143695|gb|ADI00453.1| N-6 DNA methylase [Bacillus selenitireducens MLS10] Length = 707 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 99/301 (32%), Gaps = 47/301 (15%) Query: 108 SDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S N +AI DF+ E L + ++L D + +Y L Sbjct: 151 SSNLRAILNSIIDFNKIDVAKEDFETLI----KINELDLEFIRGEDF-LGLLYMAL---S 202 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT----- 221 S+ + + F TP VV + + DP CG+G FL Sbjct: 203 ASKDRKNSGSFYTPSKVVDYIIN------EDSIDYENIDQPKILDPCCGSGNFLIKIFIS 256 Query: 222 ---DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + M + K + +G +++ + +++ L L+ NI+ Sbjct: 257 LEKEFMKKGIRREIYEKEIINEIIYGYDIDQTAVDLSKINLIL--LTKSQIYSLNPNIEC 314 Query: 279 GSTLSKDLFT------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 +TL ++ + F++ + NPP+G + D+ + G S Sbjct: 315 KNTLIEEAPSLFFDSFNHSFNWIIGNPPWGYSFTNDEKKQLNQI---------YGTNNQS 365 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 S G+ + VL S L S IR+ LLEN ++ I Sbjct: 366 IESFA---LFIRCGLDLLEENGQLSFVLPESLLN----IKIHSSIRQDLLENYNVKKIRK 418 Query: 393 L 393 L Sbjct: 419 L 419 >gi|229088737|ref|ZP_04220294.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44] gi|228694562|gb|EEL47981.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44] Length = 548 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 102/301 (33%), Gaps = 44/301 (14%) Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + + ++S+IYE + +E + F TP ++V+L + Sbjct: 128 VELIDNYIIQEGELGSELISSIYE---KSLNAEEKKRLGQFYTPNNIVNLMID-----ET 179 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAV 254 L K +++ DP CG G FL + + + HG ++ P + Sbjct: 180 NLRKIDFNNTKSIIDPACGAGIFLVNIIKMMKKRNQGLSLAKIIYNSLHGNDINPFAIFL 239 Query: 255 CVAGM---LIR-------RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 M L+ +E + KNI +T+++D +++ Y + NPP+ K Sbjct: 240 TKLNMSCELLNTMKVPEEVMEFLDKYADFKNIVLVNTITED--NDEKYDYIIGNPPYFKL 297 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG--GRAAIVLSS 362 +K E + GL + L+ G Sbjct: 298 SDKKFKNHEMYTEIMYGQPNIYGL------------FIYWSLKHSKENGYISLIVPQSFK 345 Query: 363 SPLFNGRAGSGESEIR-RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 S L+ + S+ R + L+ T +F A + + N+K + + K Sbjct: 346 SGLYFLNLRNELSKYRIKSLINFKS-------RTKIFKNVLQAVIIMTIKNQKKGKAKVK 398 Query: 422 V 422 V Sbjct: 399 V 399 >gi|161528118|ref|YP_001581944.1| restriction modification system DNA specificity subunit [Nitrosopumilus maritimus SCM1] gi|160339419|gb|ABX12506.1| restriction modification system DNA specificity domain [Nitrosopumilus maritimus SCM1] Length = 730 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 111/357 (31%), Gaps = 63/357 (17%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 FD + L+ KI L + + + + ++ + + Sbjct: 217 FDLDFKLPH----DLISKIVFKLQKYSLTKSQLKNMPLGFS-QGILSK-------STGAY 264 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 +TP + + L + D CG+G FL +A Sbjct: 265 LTPDAISEFMSHLFKINSK----------MKVLDLACGSGAFLVNAGKF----------- 303 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPR--RDLSKNIQQGSTLSKDLFTGKRFHYC 295 G + + + + +++ D ++ + +S F Sbjct: 304 -GASVVGVDANRQIANIAKINCYLNGIKNASVICADSLGPLENLAKMSSGNIQTNSFDLV 362 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 L++PPFG + KD +G RF LF+ L+ GG+ Sbjct: 363 LTHPPFGLRLTKDYANFSMLTISG--NRFMES---------LFIERSWELLKE----GGK 407 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414 I+L N +IR ++ N + I++LP FF ++I T + +L Sbjct: 408 LIIILPEGITSNKSTR----KIREFITTNFKVLGIISLPDYAFFPYSSIKTTILVLEKLG 463 Query: 415 TEERRGKVQLINATDLWTSIRNEG-KKRRIINDD-QRRQILDIYVSRENGKFSRMLD 469 + + A +N G K+ I+ + +IL+ + D Sbjct: 464 PKIISNSYMIFTA-----YAKNLGYDKQGILAKESDFSKILEDFNKFLQTNKGSKFD 515 >gi|164688287|ref|ZP_02212315.1| hypothetical protein CLOBAR_01932 [Clostridium bartlettii DSM 16795] gi|164602700|gb|EDQ96165.1| hypothetical protein CLOBAR_01932 [Clostridium bartlettii DSM 16795] Length = 80 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 7/52 (13%), Positives = 19/52 (36%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 +W +A+ L + ++ ++L L+ + + E+ F Sbjct: 9 KLWASADKLRNNMDAAEYKHIVLGLIFLKYVSDTFMEKHKELMEEDEEFAED 60 >gi|312874697|ref|ZP_07734718.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b] gi|311089774|gb|EFQ48197.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b] Length = 675 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 118/378 (31%), Gaps = 80/378 (21%) Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM---SN 157 + ++ K +FE D I + K ++ P + + Sbjct: 283 NDKVEMVNNYLKPVFEKRDLWKPI----NGESVIKSVYKQVKEDILPLLESNIRLDFTGK 338 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 I L + + + +TPR V +L + D+ ++D G+ Sbjct: 339 ILNSLNDWVSIDNDKKNDVVLTPRFVTNLMARITRTNKDSF----------VWDTCMGSS 388 Query: 218 GFLTDAMNHVADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 GFL AM+ + D + K G E+ + + V M++ Sbjct: 389 GFLVSAMDLMIDDAKNTIKDNTVLDSKIKNIKQNQLLGIEILGNIYILAVLNMILMG--- 445 Query: 267 DPRRDLSKNIQQGSTLSK----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 D S I G + + + L NPP+ + Sbjct: 446 ----DGSSQIICGDSHKEAPDFIKTHNFPANVFLLNPPYSAPGKG--------------- 486 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI-RRWL 381 + F+ +K++ + L AGSG+ ++ + + Sbjct: 487 -------------LNFVDEALSKMQTGY-----------GAVLIQENAGSGQGDVYAKRI 522 Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LE + + A + +P DLF +++ T +++ E V I+ ++ +N Sbjct: 523 LEKNTLLASIHMPNDLFNGKSSVQTAIYLFQVNCPHEVDDMVTFIDFSEDGYVRQNRKHS 582 Query: 441 RRIINDDQRRQILDIYVS 458 + +N L+ Y Sbjct: 583 TQKVNLRNVDHALERYNE 600 >gi|206895091|ref|YP_002247705.1| HsdM, putative [Coprothermobacter proteolyticus DSM 5265] gi|206737708|gb|ACI16786.1| HsdM, putative [Coprothermobacter proteolyticus DSM 5265] Length = 203 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 29/211 (13%) Query: 1 MTEFTGSAA--SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57 M + L + +W A D K T++ + F L+ + R RE Sbjct: 1 MAQNNNKVDFHRLGSELWDIANIFRDDTLKTTEYLEEFSYFLFLKLFD-----EREKQRE 55 Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLESYIASFSDNAKA 113 + G+ + F +E L T+ + + + Y+ + Sbjct: 56 ELARLDGTKFVPDLPNH---LRFSTWAEKILASDGKTVKTDDGEFTIVDYVRNIFSELAE 112 Query: 114 IFEDFD---------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + + F + I R+ + + ++ K +EL VM YE +++ Sbjct: 113 VKDHDGRDLSLFRRLFKNHIWRIRYSPTIKELIKRLKDLEL---EQNFDVMGRAYEFVVQ 169 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + G + + + TPR ++H L + Sbjct: 170 KLGEQ--KQYGQYFTPRHIIHFMVELADPGN 198 >gi|298531182|ref|ZP_07018583.1| hypothetical protein Dthio_PD0425 [Desulfonatronospira thiodismutans ASO3-1] gi|298509205|gb|EFI33110.1| hypothetical protein Dthio_PD0425 [Desulfonatronospira thiodismutans ASO3-1] Length = 116 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52 N +W A+ L G +++ V+L L+ + + + Sbjct: 47 ENQMWAAADKLRGHMDASEYKYVVLGLIFLKYISDSFQAKY 87 >gi|302348051|ref|YP_003815689.1| Site specific DNA-methyltransferase [Acidilobus saccharovorans 345-15] gi|302328463|gb|ADL18658.1| Site specific DNA-methyltransferase [Acidilobus saccharovorans 345-15] Length = 471 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 93/290 (32%), Gaps = 56/290 (19%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP +V + DP CG G FL+ Sbjct: 14 KVYGQFFTPPEVANFIV--------DFASTFVQEKNRAVDPACGDGVFLSAL------LR 59 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S + + G L V + ++ + D Sbjct: 60 SGFREVWGMDIDGSVLNRMPEHVRKSAKVLIGDALVMNPLFPQ---------DDALPANS 110 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + NPPF K+ + +D+ + ++ G GR + +LFL Sbjct: 111 FDLVVGNPPFSAKFGRVRDSRLELYELGR-GRRSQAI------EVLFLERFITLARP--- 160 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410 GG I+L N +RR++L+ ++ +V+LP +F + + +L Sbjct: 161 -GGVIGIILPDGIFINKNYEY----VRRFILKYKVL-GVVSLPRGIFRSSLSTTSKTSVL 214 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 RK +V + A DL D+ ++++ +Y R+ Sbjct: 215 FLRKARGDNDEVFMYEARDL----------------DELQEVIRVYRERK 248 >gi|218246498|ref|YP_002371869.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 8801] gi|218166976|gb|ACK65713.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 8801] Length = 1005 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 65/502 (12%), Positives = 141/502 (28%), Gaps = 52/502 (10%) Query: 105 ASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + + + + + F F+ T R L Y + + + ++ + + ++YE+ Sbjct: 233 NNIARELQGVIDTF-FTGTTKRNTLGTIERYYAVIRR-TAASIYNHQEKQKFLKSVYENF 290 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + + ++ TP ++V + K + DP GTG F+T Sbjct: 291 YKAYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFGKLLCDPGVEILDPATGTGTFIT 350 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + ++ K H E+ + + + + + +I T Sbjct: 351 ELIEYL--PKDKLKYKYQNEIHCNEVAILPYYIANLNIEYTYKQKMGEYEEFDHICFVDT 408 Query: 282 LSKDLF---------------------TGKRFHYCLSNPPFGKKWEKDKDAVEKE----- 315 L F ++ + NPP+ K E Sbjct: 409 LDNTSFTGKQLDLFAMTVENTQRIKDQNDRQISVIIGNPPYNAKQENFNQNNANRKYTEI 468 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL----FNGRAG 371 K + G + + N G A + +SS L F+G Sbjct: 469 DKLIKDTYIKQGTAQNKNVVYDMYTRFIRWASDRLNKDGIIAFITNSSFLDALAFDGFRK 528 Query: 372 SGESEIR-RWLLEN-DLIEAIVALPTDLF-------FRTNIATYLWILSNRKTEERRGKV 422 S + E + ++ + AI +F F T T + IL K + G Sbjct: 529 SIKDEFSYAYFIDCGGNVRAISG-KDGIFICEKHTIFGTAAMTGIAILFLVKDSQATGNK 587 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 +R K + + +I + K + L+ + + L Sbjct: 588 IFYANPFHVHELRE--NKLSYLQQNSISKIS--FEHIHPNKKNNWLNQANNDFDDLLPLM 643 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 + + +L + F D L+ M+ + + ++ Sbjct: 644 DKEVKAGKSTEAIFKLFSSGLKTHRDEWVYDFSQDELEKKMK-FFINTYQKTLEDNDYTE 702 Query: 543 NEAKTLKVKASKSFIVAFINAF 564 + + F Sbjct: 703 KDLIKWDADLKQYLKRNISKEF 724 >gi|283782441|ref|YP_003373196.1| type I restriction-modification system methyltransferase subunit-like protein [Pirellula staleyi DSM 6068] gi|283440894|gb|ADB19336.1| Type I restriction-modification system methyltransferase subunit-like protein [Pirellula staleyi DSM 6068] Length = 531 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 34/250 (13%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 A TP + L + L I + DP CG G L A + + Sbjct: 10 ARHDAGVVYTPATLARLLAEVSLAALHQAGIPKDRTILQIVDPACGEGALLQAASDELKR 69 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 GS + + G +++P A+ A D+ +Q L + Sbjct: 70 VGSPAE---SVHFTGYDIDP--VAIHRA-----GSLVGNSSDVGAQLQVADALDRAAIAN 119 Query: 290 KRFHYCLSNPPF------GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 ++F LSNPP+ ++ ++K K G F + LF+ Sbjct: 120 QQFDLVLSNPPYVSIRRLTQQASREKIDAYKRDYQSACGCFDLYV--------LFVERCL 171 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTN 402 ++ GG +++ A + RR +LE L+E ++ L +F Sbjct: 172 ELVKP----GGICGLLVP----SRIAAMKYATACRRLVLEQTLVE-VIDLSKLMMFRGAK 222 Query: 403 IATYLWILSN 412 + + ++ Sbjct: 223 VYPCILVIRR 232 >gi|253827884|ref|ZP_04870769.1| putative methylase [Helicobacter canadensis MIT 98-5491] gi|253511290|gb|EES89949.1| putative methylase [Helicobacter canadensis MIT 98-5491] Length = 542 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 78/476 (16%), Positives = 157/476 (32%), Gaps = 84/476 (17%) Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 ++ + + + E F + I R +L + E+ P + Sbjct: 46 DKQQIDEDISAILKGYG------LEAFSANPKINR---KKILKALLD----YEITPRDLE 92 Query: 152 DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + +++ ++ + ++ TP +V L LL ++Y Sbjct: 93 NFIQIIVLHKTILGLY---------EYATPIEVNLLVCKLL----------DMKSNESIY 133 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P CG G L +G+++ P+ + + S Sbjct: 134 NPCCGLGSLLFGMDER------------NFDYYGEDIHPKILYLAK-------ILSIFMG 174 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + + F + P + ++ +L F +P+ Sbjct: 175 FKRSYLAVADIFKESAFRSLEANKAFCYFPLESSLNLW------DFRDNDLEPFVKSIPE 228 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 I FL + + I + S L G +R++L E L+E + Sbjct: 229 IP-----FLAYTLRHFKQK-------GIFIVRSLLLQKAYG---KRLRKFLKEKRLLEGV 273 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 V P ++F L ILS + KV I+A + EGK R+ N Sbjct: 274 VEFPRNIFPHQVEEFSLLILSKQ----ENKKVFFIDAQKFYL---KEGKYNRLTN---ID 323 Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 +I D Y+S+++ SR++DYR K + I D L + + Sbjct: 324 RIYDEYLSKQDSDISRLVDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVES 383 Query: 511 HQSF-WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 + +D ++ YG++E F++ S KS++ + K++ I+ + Sbjct: 384 KKDEVLMDCYNVGIKDFEDYGFSEVFLEFSPKSDQKRIEKLRIQAYDILLSMRGVS 439 >gi|46199730|ref|YP_005397.1| hypothetical protein TTC1428 [Thermus thermophilus HB27] gi|46197356|gb|AAS81770.1| hypothetical protein TT_C1428 [Thermus thermophilus HB27] Length = 508 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 22/166 (13%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG----- 63 A+L +++W A + G F I P L RL E + E+Y Sbjct: 6 ATLESWLWNAACAIRGPVGAPKFKDHIPPLAFLERLSDVFEEELYRLAEEYGNREVALSL 65 Query: 64 GSNIDLESFVKVAGY-SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122 + G FY E + + + L Y+ +D + + Sbjct: 66 VEERKEGVIAQGRGLVRFYIPEEVRWTNIRKQDKG--LSQYL---TDAVR--------KN 112 Query: 123 TIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 +++ +A L ++ ++ + + + N +H +R+ Sbjct: 113 KHSKMVMPVEAELRKRVIEHLRELGFKVENGELALEGNSDKHFLRQ 158 >gi|332982562|ref|YP_004464003.1| hypothetical protein Mahau_2005 [Mahella australiensis 50-1 BON] gi|332700240|gb|AEE97181.1| hypothetical protein Mahau_2005 [Mahella australiensis 50-1 BON] Length = 858 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 65/362 (17%), Positives = 112/362 (30%), Gaps = 56/362 (15%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 K+ S D + D +++ IY H S S+ F T +V L P Sbjct: 82 KLAHILSHAISEDDWLKDDIIAWIYRHC---ANSADSKSKTRFYTYDWIVKYIVDNTLTP 138 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQ 245 +S I+ L DP+CG G FL A + D + +G Sbjct: 139 YWRKIGKSVESIK-LLDPSCGGGSFLLYAFDRFYDMYVEEGCVPVGDIPRSILNKNIYGV 197 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGS----TLS----KDLFTGKRFHYCL 296 +++P + + ++ + D +KNI +L D G+ + + Sbjct: 198 DIDPRAVRIARLNLYMKAKSMNADVDVPTKNIICSDHDMGSLVRHGIHDKVGGQLYDVVV 257 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGG 354 NPP+ + + + S + F+ L G Sbjct: 258 GNPPYLNNRKMTDNLRGNIAQWYSH----------SKTDLYAAFIERGLELLVPE----G 303 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 + + L+ +R LL+ I+ IV L D+F N++ + I N Sbjct: 304 YLGYITPDTYLY----IKRFETLRSVLLDKLYIDKIVHLGNDVFANANVSVAVLIARNDA 359 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 + +R K+ +I D YV + LD F Sbjct: 360 KNR---------GVSWFYDLRRVKDKK-----GALYRIDDRYVYIREQCIFKSLDGERFL 405 Query: 475 YR 476 Y Sbjct: 406 YN 407 >gi|315453673|ref|YP_004073943.1| adenine-specific DNA-methyltransferase [Helicobacter felis ATCC 49179] gi|315132725|emb|CBY83353.1| Type IIS restriction enzyme M protein (Mod),Site-specific DNA-methyltransferase (Adenine-specific) [Helicobacter felis ATCC 49179] Length = 687 Score = 69.6 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 56/319 (17%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++ L + ++ + +TPR+VV L L D+ ++D Sbjct: 336 DIAGRLFNTLTKWLNVPDNKKNDVVLTPREVVDLMVELAQVNKDSF----------VWDY 385 Query: 213 TCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 G+G FL +MN + G E E + + + ML+ Sbjct: 386 AAGSGAFLISSMNKMLKDCEEKITEPRARADKINKIKNEQMLGIEKNTEIYLMGILNMLL 445 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D S N +L F K+ P + K Sbjct: 446 LG-------DGSTNFLHRDSLED--FEAKK--------PINYEQGDLKGEPFN------A 482 Query: 322 GRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 F P + G +F+ ++E GRA +++ + G Sbjct: 483 NVFLLNPPYSAKGKGFIFVERALERMEK-----GRAVVIIQENA---GSGNGWPYTA--Q 532 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE+ + A + +P DLF +++ T +++ V+ I+ + + K Sbjct: 533 ILEHSTLVASIKMPLDLFVGKSSVQTAIYVFEVGTPHSEDKLVKFIDFSHDGYTRAARKK 592 Query: 440 KRRIINDDQRRQILDIYVS 458 R N + Y Sbjct: 593 ARASTNLRDTDHAKERYAE 611 >gi|254412611|ref|ZP_05026384.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196180346|gb|EDX75337.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 1053 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 89/289 (30%), Gaps = 63/289 (21%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S+IYE +R E + TP +V +L D ++ + DP C Sbjct: 333 ISSIYEEFVR----ENTTDKGVHYTPGHIVDFILDGVLPWDSEVWDIK------ILDPAC 382 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRR 263 G+G FL A + + G ++ P+ V + + Sbjct: 383 GSGIFLVKAFQRLIHRWKKANGGAEITSNILKSLLERNLFGIDINPQAVRVASFSLYLTM 442 Query: 264 LESDPRRD----------LSKNIQQGSTLSKD------LFTGKRFHYCLSNPPFGKKW-- 305 + R + + +D ++ + N P+GK Sbjct: 443 CDEIDPRHYWQEVRFPRLRDRQLICADFFREDREEFRTQLDADQYDLVVGNAPWGKNSMT 502 Query: 306 ---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + + E G++G +LFL A + GG+ A++ + Sbjct: 503 PLAKSWAKDNQWETSYGDIG-------------LLFLPKAAALTKP----GGQIAMMQPA 545 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLW 408 L + G+ + R L IE IV L LF T + Sbjct: 546 LALIFNQVGTA-KKFREKLFSQFKIEEIVNLSALRFGLFKDAISPTCII 593 >gi|296127792|ref|YP_003635044.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563] gi|296019608|gb|ADG72845.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563] Length = 405 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 49/280 (17%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 ++ E + + TP+ + L L+ + DP CG+G F+ Sbjct: 13 LKNTDIEKRKRLGQYFTPKSIRELLLKKLIS------ISDKKDNVKILDPACGSGEFILS 66 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + +G E++ ++ + + +I+ TL Sbjct: 67 FKEY----------FNNPHLYGFEIDESLVSISK------------KLINNADIKCIDTL 104 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 D+ ++ Y + NPP+ K +K++ + GR + + Sbjct: 105 KIDIEKSIKYDYVIGNPPY--FEFKPDKETKKKYSDIISGRVN-------------IFSI 149 Query: 343 ANKL-ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFR 400 KL GG A V+ S G+ S++R +++ N +E + + +D F+ Sbjct: 150 FIKLGLELLEDGGYLAYVVPPSM----NNGAFFSKLREYIINNSSVEYLHIVEGSDNFYM 205 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 N L IL + + + + N ++T + Sbjct: 206 ANQKVMLLILKKTNSHKNKKYIFSKNGITIFTEDKTFLNN 245 >gi|225352860|ref|ZP_03743883.1| hypothetical protein BIFPSEUDO_04494 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156309|gb|EEG69878.1| hypothetical protein BIFPSEUDO_04494 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 101 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 7 SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE 45 + LA+ IW++A + + ++ IL F + L Sbjct: 2 NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLS 40 >gi|13357657|ref|NP_077931.1| type I restriction enzyme M protein (fragment) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761898|ref|YP_001752183.1| hypothetical protein UPA3_0103 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11357067|pir||G82933 type I restriction enzyme M protein, truncated homolog UU100 [imported] - Ureaplasma urealyticum gi|6899055|gb|AAF30506.1|AE002110_4 type I restriction enzyme M protein (fragment) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827475|gb|ACA32737.1| conserved domain protein [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 187 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 25/164 (15%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAV 55 + +L IWK A++L G DF + +L R + L + Sbjct: 3 NKKEIERNNLHATIWKIADELRGAIDGWDFKQYVLGILFYRYISENLTKYINDNEHKIGD 62 Query: 56 REK-YLAFGGSNIDLE-SFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESY---IA 105 + Y ++D E + FY + + + + N LE+ I Sbjct: 63 HDFNYETCNDDDVDEEMKITLIKEKGFYIKPSFLFANIVKNAEKNENLNETLETVFNNIE 122 Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNF 140 S N K +F D D +++ E+ L +I Sbjct: 123 GSSSGYDSEKNLKGLFNDIDVNNSRLGSTTQERNKRLARILIRI 166 >gi|119509079|ref|ZP_01628230.1| type II restriction enzyme, methylase subunit [Nodularia spumigena CCY9414] gi|119466245|gb|EAW47131.1| type II restriction enzyme, methylase subunit [Nodularia spumigena CCY9414] Length = 1018 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 89/523 (17%), Positives = 150/523 (28%), Gaps = 132/523 (25%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 LR E + L F +L A Y YN+ + + Sbjct: 236 IFLRICEDREIEIYEQLLN-LLKFQNIYQELGRLFINADYR-YNSGLFYFQQEKGREQPD 293 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 + + ED+ + I +L Y+ FS I + ++ + Sbjct: 294 DFTLNLT---------IEDYPLRAIIKKLYPPESPYE----FSVIPVE-------ILGQV 333 Query: 159 YEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 YE + + EV + + TP +V + K Sbjct: 334 YEQFLGKIITLSASRQAVVEDKPEVRKAGGVYYTPSYIVDYIVKETIGKFLEGKKPEKVQ 393 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG---------------------------SHHKIPP 238 ++ DP CG+G FL A + D + K Sbjct: 394 EMSIIDPACGSGSFLIVAYQFLLDWYLQQYLQNLKKYKNKIYQVTGNSWRLTSTERKRIL 453 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLS 283 + +G +++ + +L++ LE + DL NIQ G++L Sbjct: 454 LAHIYGIDIDQQAVETTKLSLLLKVLEGESVETITKQLEFLKERALPDLDNNIQCGNSLI 513 Query: 284 K------------DLFTGKR------------------FHYCLSNPPFGKKWEKDKD-AV 312 D T +R F + NPP+ + + A+ Sbjct: 514 DGEFYQNNQLDLLDEDTSERINIFDWETGFSAIMKRGGFDIVIGNPPYIRIQALKEWAAL 573 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 E E + G+ + K GR +L A Sbjct: 574 EVEFYQEKYV-------SAKKGNYDIYVIFVEKGLNLLTKDGRLGFILPHKFF---NAQY 623 Query: 373 GESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431 GE IR ++ EN + I+ +F T L LS +K N + + Sbjct: 624 GEL-IRGFIAENKSLNQIIHFGDKQVFTDATTYTCLLFLSKQK-----------NKSFEF 671 Query: 432 TSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTF 473 I + R N + RQI + Y+S E F D + F Sbjct: 672 KKIHSLIDWRSDENKNIVRQIFPMSYISHEEWNFVMGRDDKWF 714 >gi|86152172|ref|ZP_01070384.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp. jejuni 260.94] gi|85840957|gb|EAQ58207.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp. jejuni 260.94] Length = 43 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 30/41 (73%) Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 GYEI F+++FY Y P RKL++I+ EL+ +E ++ LL E+ Sbjct: 2 GYEILFSKYFYTYTPPRKLEEINNELEKLEKEVQDLLREIV 42 >gi|69244346|ref|ZP_00602814.1| type I restriction-modification system methylation subunit [Enterococcus faecium DO] gi|68196532|gb|EAN10959.1| type I restriction-modification system methylation subunit [Enterococcus faecium DO] Length = 134 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 16/109 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE 101 + + Y S Y + L + + Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQ 111 >gi|296125965|ref|YP_003633217.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563] gi|296017781|gb|ADG71018.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563] Length = 676 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 69/417 (16%), Positives = 124/417 (29%), Gaps = 85/417 (20%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYS-LSTLG--- 92 + + ++ LA +K Y N S S L LG Sbjct: 214 LIFTKLYDEFSVISKDKATIYTLADIDEEEPFIEKIKKLKELKYSNDSRLSKLKKLGFYN 273 Query: 93 ---STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + + K +F +STI+ + L + ++L Sbjct: 274 YGYDDELKKAINDLFERAQKKWKNVFPA---NSTISL--SSSHLAVCVSSLQKVKLFNSN 328 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + V+ +E+LI + + + TPR V+ + +L +P ++ Sbjct: 329 LE--VIDEAFEYLINK---DSKGEKGQYFTPRHVIDMCVKML----------NPHKNESM 373 Query: 210 YDPTCGTGGFLT------DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 D G+ GF + + + G + + V LI Sbjct: 374 IDTAAGSCGFPVHTWFNMIGHLFDGQEPNDDEKEYVENIFGLDFDERAVRVARTLNLIAG 433 Query: 264 LESDPRRDLSKNIQQGSTLSKDL---------------------------FTGKRFHYCL 296 D N+ +TL D + F L Sbjct: 434 -------DGETNVLHINTLDYDKKRWDEKRDSDYREAFNNLIKHSVNKEDYKLFDFCLLL 486 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 +NPPF + ++ + + +++ + G+ G +LF+ GGR Sbjct: 487 ANPPFAGEIKEHR--ILAKYEIAKKGKKSIGR------DILFIERNL----DFVRDGGRL 534 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412 A+VL FN IR ++ E I A+V L + F T T + L Sbjct: 535 ALVLPQGR-FNNATD---EYIRDFISEKARILAVVGLHGNTFKPHTGTKTSVIFLQK 587 >gi|148265621|ref|YP_001232327.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] gi|146399121|gb|ABQ27754.1| N-6 DNA methylase [Geobacter uraniireducens Rf4] Length = 738 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 68/476 (14%), Positives = 130/476 (27%), Gaps = 122/476 (25%) Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGST----------NTRNNLESYIASFSDNAKAIF 115 ++ E F + + L N + +F Sbjct: 202 EMEDEVLANAGVDVFEELFKLIFTKLYDEMESGRDKKRHLIFRNYGDTETELKAKIQELF 261 Query: 116 EDF--DFSSTIARLEKAGLL-YKICKNFSGIELHPDTVPDRVMSN-IYEHLIRRFGSEVS 171 + + K L + S +E + + + +E+LI + Sbjct: 262 DKARGKWEGVFPDGAKIDLTPSHLAVCVSSLEGVKLFNSNLDVVDEAFEYLINK---SSK 318 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---- 227 + TPR V+ + +L +P ++ D G+ GF + HV Sbjct: 319 GEKGQYFTPRYVIDMCVKML----------NPQEHESIIDTAAGSCGFPVHTIFHVWHQI 368 Query: 228 --------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GMLIRRLESDPRRDL 272 + + + V ++ +++ Sbjct: 369 RRDLGLPISDHFTTEQRTPRETDYVQDKVFAIDFDEKAVRVGRTLNLIAGDGQTNVLHLN 428 Query: 273 SKNIQQGSTLSKDLFT----------------------GKRFHYCLSNPPFGKKWEK--- 307 + + ++ +KD F ++NPPF ++ Sbjct: 429 TLDYERWDEKTKDQNWTDIYSEGWKKLRKQRAAKEQDRDFSFDILMANPPFAGDIKETRI 488 Query: 308 ------------------DKDAVEKEHKNGELGRFG-------PGLPKISDGSM------ 336 D++ E + F + K++DGS Sbjct: 489 LAKYELARTVSLDKISKVDENDKNIEDATQRVPTFPECLRASFDTIYKMADGSFRKVKIK 548 Query: 337 ---------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LF+ + ++ GGR AIVL N S + IR +L ++ I Sbjct: 549 DQNNVGRDILFIERNLSFIKP----GGRMAIVLPQGRFNN----SSDKYIREYLADHCRI 600 Query: 388 EAIVALPTDLFF-RTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKK 440 A+V L ++F T T + + K R + AT S N G K Sbjct: 601 LAVVGLHGNVFKPHTGTKTSVIFVQKWDDKLCPRVDDYHIFFATMKEPSKDNSGDK 656 >gi|303237597|ref|ZP_07324159.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN] gi|302482230|gb|EFL45263.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN] Length = 681 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 69/462 (14%), Positives = 145/462 (31%), Gaps = 91/462 (19%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 + TL +T T N+ S K + F++ + L + Sbjct: 293 IRTLQNTLTAENVNKVENGESQ-LKRV-----FTNIVDDLG---------------IYYK 331 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + ++ + G + + +TP V L L D+ Sbjct: 332 IGLTTDFTGKLFNEMYGWLGFSQDKLNDVVLTPSYVATLLVKLARVNKDS---------- 381 Query: 208 TLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCV 256 ++D G+ G L AMN + + G EL P + + + Sbjct: 382 YVWDFATGSAGLLVAAMNEMLVDAKNNIDSPNELAKKEARIKAEQLLGIELLPSVYMLAI 441 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 M++ D S NI +L ++ Y K Sbjct: 442 LNMILMG-------DGSSNILNKDSLKD---FDGKYGY------------------GKPK 473 Query: 317 KNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + F P S G+ M F+ + ++ G AAI++ SS G + E Sbjct: 474 EQFPADAFVLNPPYSSLGNGMNFVEKALSMMQR-----GYAAIIIQSSA---GSGRATEY 525 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 R +L+ + + A + +P DLF +++ T +++ + ++ V+ I+ ++ + Sbjct: 526 NKR--ILKRNTLLASIKMPIDLFIGKSSVQTNIYVFRINEAHKKDDVVKFIDFSNDGYTR 583 Query: 435 RNEGKKRRIIND-----DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 N K + D ++ +I+++ + S++ Y + + Sbjct: 584 TNRKKASVNLKDTDHAKERYEEIVNLVRFGK----SKLNILTEKEYYEGTIDPNSGADWN 639 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + + +S ++LK + G Sbjct: 640 QTAPIDTKPTLADFKKTVSDYLAWEVSNLLKQKANEEDSLGK 681 >gi|260558487|ref|ZP_05830683.1| type I restriction-modification system methylation subunit [Enterococcus faecium C68] gi|260075661|gb|EEW63967.1| type I restriction-modification system methylation subunit [Enterococcus faecium C68] Length = 134 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 16/109 (14%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 60 ------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE 101 + + Y S Y + L + + Sbjct: 63 QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQ 111 >gi|134301999|ref|YP_001121967.1| putative N-6 DNA methylase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049776|gb|ABO46847.1| putative N-6 DNA methylase [Francisella tularensis subsp. tularensis WY96-3418] Length = 423 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 67/415 (16%), Positives = 110/415 (26%), Gaps = 102/415 (24%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSH------------------------------ 233 + DP G+GGFL A V D Sbjct: 8 KQNELICDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENIDDEKLKAKY 67 Query: 234 --------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + G + P V M++ D I Sbjct: 68 EQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG-------DGHNGIHHN 120 Query: 280 STLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-------------------- 318 L + F L+NPPFG KD V +E K Sbjct: 121 DGLLNVNGIFRNCFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEE 180 Query: 319 --------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 G+ R +IS +LF+ + L+ GGR IVL L + Sbjct: 181 LKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVLPEGVLNSSN 236 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQLINA 427 + R + I IV+LP DLF + + T L L + Sbjct: 237 LQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKK----------FTVEE 282 Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 + + +++ + +K + + + E + R + + Sbjct: 283 QEQYETVKTQAEKEAEQKYQPQLLEIQQKIDFEKSIKQHITKLRKALKTK-TAKNKENLQ 341 Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 LD+T + E ++ + + Q I E + E K+ Sbjct: 342 LTLDETIVEHTEYKKKVKQYKAQLKELEAKQQEEAKQLIKQKFDYEIPIAEIEKA 396 >gi|332686989|ref|YP_004456763.1| type I restriction-modification system, DNA-methyltransferase subunit M [Melissococcus plutonius ATCC 35311] gi|332370998|dbj|BAK21954.1| type I restriction-modification system, DNA-methyltransferase subunit M [Melissococcus plutonius ATCC 35311] Length = 208 Score = 69.2 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 21/184 (11%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73 W G T + I + L V E + + + Sbjct: 12 WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLEGVLRGETWEQVYAQDS-ARALE 70 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119 + Y + + F+ + + IF+ Sbjct: 71 YMKKNLGYGIQPNDFFVDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130 Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F S + +A ++ + + S E +S+IYE+L+ +F ++ Sbjct: 131 FDSADLGVNAQARAKVMISMIELLSSPEFDFSNGK-DTVSDIYEYLLAQFAMVLASDMGK 189 Query: 177 FMTP 180 + TP Sbjct: 190 YYTP 193 >gi|291531338|emb|CBK96923.1| Type I restriction-modification system methyltransferase subunit [Eubacterium siraeum 70/3] Length = 685 Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 119/342 (34%), Gaps = 77/342 (22%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS-------EGAEDFMTPRDVVHLATALLL 192 FS I ++ + ++ F + + + +TP V L L Sbjct: 322 FSKIVDDLGIYYKIGITTDFTGML--FNEMYNWLGFTQDKLNDVVLTPSYVARLLVKLAR 379 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILV 241 D+ ++D G+ G L AMN + + Sbjct: 380 VDKDS----------YVWDFATGSAGLLVAAMNEMIDDAKEKISSPEEYQEKVAKIKATQ 429 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 G E+ P+ + + + M++ D S NI +L N F Sbjct: 430 LLGLEILPQIYMLAILNMILMG-------DGSSNILNQDSLKN----------FDGNYGF 472 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVL 360 + F P +DG+ M+F+ + + G AAI++ Sbjct: 473 SSTKKNFPATA-----------FVLNPPYSADGNGMIFVEKALSMM-----ENGYAAIII 516 Query: 361 SSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418 +S AGSG++ + + +L++ + A + +P DLF +++ T +++ + Sbjct: 517 QNS------AGSGKAVKYNKEILKHSTLLASIKMPIDLFVGKSSVQTNIYVFKVGEPHHA 570 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIIND-----DQRRQILDI 455 + V+ I+ ++ + N K + D ++ ++I DI Sbjct: 571 KNTVKFIDFSNDGYTRTNRKKASVNLRDTDHAKERYQEIADI 612 >gi|300905269|ref|ZP_07123041.1| N-6 DNA Methylase [Escherichia coli MS 84-1] gi|301305093|ref|ZP_07211193.1| N-6 DNA Methylase [Escherichia coli MS 124-1] gi|300402853|gb|EFJ86391.1| N-6 DNA Methylase [Escherichia coli MS 84-1] gi|300839598|gb|EFK67358.1| N-6 DNA Methylase [Escherichia coli MS 124-1] gi|315255852|gb|EFU35820.1| N-6 DNA Methylase [Escherichia coli MS 85-1] Length = 715 Score = 68.8 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 81/279 (29%), Gaps = 42/279 (15%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE 101 R + + + +K A F N Y +S GS N + E Sbjct: 209 RFRDVFD---------WQYVESHGDKAVAQIKAAFEEFKNHENYVVISDDGSRNPIFSKE 259 Query: 102 SYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 +++ S + N + + E + + + V ++ +++ Sbjct: 260 THLRLSVAKNYQDLLEAIQNLGPVKTND---------GKIAKEHGTLADVSGDLLGRVFD 310 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTG 217 +R G ++TP V + + D + + DPTCG+ Sbjct: 311 VFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSF 369 Query: 218 GFLTDAMNHVADCGS------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 GF + A++ + + G + P + M ++ Sbjct: 370 GFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAP 429 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++L+ + F +NPPFG Sbjct: 430 KAQIFYT------DNSLTTNALKPNSFDLICTNPPFGTP 462 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 31/151 (20%) Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385 D ++LF+ L+ GGR IVL L SG+ +R +++ + D Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 624 Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429 +++A+++LP+D F T T + L R E + V + A Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 684 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 L ++N + + +I+ +Y E Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSVYKRGE 715 >gi|313892837|ref|ZP_07826417.1| type I restriction-modification system, M subunit family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442620|gb|EFR61032.1| type I restriction-modification system, M subunit family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 166 Score = 68.8 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 13/129 (10%) Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GG A ++ LF + +R+ ++EN + AI+++P+ +F ++T + I Sbjct: 2 KKGGTCACIVPDGVLF--GSSKAHVALRKEIIENHHLRAIISMPSGVFKPYAGVSTAIMI 59 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGK 463 + V + + + KR+ I D+ I+D + R+ + Sbjct: 60 FTKT-QAGGTNHVWFYD---MKADGFSLDDKRQPIEDNDIADIIDRFEHIDSESKRKRTE 115 Query: 464 FSRMLDYRT 472 S ++ + Sbjct: 116 QSFLVPKQE 124 >gi|159898715|ref|YP_001544962.1| superfamily II DNA/RNA helicase [Herpetosiphon aurantiacus ATCC 23779] gi|159891754|gb|ABX04834.1| DNA or RNA helicase of superfamily II [Herpetosiphon aurantiacus ATCC 23779] Length = 1021 Score = 68.8 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 95/329 (28%), Gaps = 41/329 (12%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 LE IA+ A F F L YK +N + Sbjct: 235 NAIAAELEKVIAALPKRA---FSRDKF------LASLDYFYKAIENSARTISDYSEKSTF 285 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDP 212 ++ +YE + + +++++ TP +V + F S + DP Sbjct: 286 -LNTVYEQFFQGYSTDIADTHGIVYTPAPIVRWMVTSVEQLLRDQFDSSLSDKGVHVLDP 344 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 GTG F+ + +N + + HK H EL + + + + Sbjct: 345 CVGTGTFMLEILNQLQNSTLEHKY--RHELHCNELLLLPYYIAAQNIEHEFYDRTQNYAP 402 Query: 273 SKNIQQGSTLSKD------------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + + L + + NPP+ + + D + Sbjct: 403 FEGLCFADNLEMEANKRQASMFVPENAQRVQQQQDAPIFVIIGNPPYNVGQQNENDNNKN 462 Query: 315 EHKNGELGRFGPGLPKISDGSM------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 R K S S+ ++ + + G A V + S + Sbjct: 463 RKYPHIDARIRQTYAKSSKASLQTKLYDMYSRFFRWATDRLGDNDGVIAYVSNGSFV--- 519 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDL 397 +R+ LL++ ++ L ++ Sbjct: 520 -EQIAFDGMRKELLKDFTSIYVLDLGGNV 547 >gi|294669729|ref|ZP_06734795.1| hypothetical protein NEIELOOT_01629 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308295|gb|EFE49538.1| hypothetical protein NEIELOOT_01629 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 316 Score = 68.8 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 109/346 (31%), Gaps = 84/346 (24%) Query: 120 FSSTIARLEKAG-LLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 + I +++ L ++ + + ++ + G + + Sbjct: 11 LTDNINKVKDGESQLKRVFGKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDV 70 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227 +TP V L L D+ ++D G+ G L AMN + Sbjct: 71 VLTPAYVATLLAKLARVNKDS----------YVWDFATGSAGLLVAAMNEMLNDAKNSIT 120 Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK- 284 + G EL + + + M++ D S NI +L+ Sbjct: 121 SPEELRRKEVQIKAEQLLGLELLSSIYMLAILNMILMG-------DGSANILNKDSLADF 173 Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 D + NPP+ +G M+ Sbjct: 174 NGKYGFGDTDKNFPADAFILNPPYSA---------------------------KGNG-MV 205 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR---RWLLENDLIEAIVALP 394 F+ + G AA+++ +S G + R R +L+N+ + A + +P Sbjct: 206 FVEKALGMMNK-----GYAAVIIQNSA--------GSGKARDNNREILKNNTLLASIKMP 252 Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 DLF +++ T +++ + + + V+ I+ ++ + N K Sbjct: 253 IDLFIGKSSVQTNIYVFKVGEPHDAKSPVRFIDFSNDGYTRTNRKK 298 >gi|167767485|ref|ZP_02439538.1| hypothetical protein CLOSS21_02004 [Clostridium sp. SS2/1] gi|167710777|gb|EDS21356.1| hypothetical protein CLOSS21_02004 [Clostridium sp. SS2/1] gi|291558536|emb|CBL37336.1| Type I restriction-modification system methyltransferase subunit [butyrate-producing bacterium SSC/2] Length = 878 Score = 68.8 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 130/422 (30%), Gaps = 60/422 (14%) Query: 49 EPTRSAVREKYLAFG-GSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYIAS 106 E + NI+ + + + + S + S + ++ + S Sbjct: 157 EEFEKGLLAAKKYLKSKKNINGQDLNNITSITMHVISALIINSKIRPDEKVPDIFDLLTS 216 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI--- 163 S FS+ + LL +I KN + ++ +V ++ YE + Sbjct: 217 LSQTYIE-----YFSNKLMFKYGKDLLSEIYKNLN-CSINYQSVDHELLGYFYESTLLQL 270 Query: 164 -RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + + TPR + + + F+ P R + D TCG+G L Sbjct: 271 SEKKAENIRREFGIYYTPRILSQEIVSCI------PFESIPIDERYVLDGTCGSGSLLLS 324 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN---IQQG 279 A + D S+ K + + E + + + RL N I G Sbjct: 325 ACKRLEDLASYEKTEFDRHDYLTRMI-EGYDIDKFASEVARLSLLLYSLPYGNKWDIHAG 383 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L K L NPP+ + + + FL Sbjct: 384 DLLRISKSKIKEPFVILGNPPYEEVRGNSQKTQKAT---------------------AFL 422 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 L G I+L S L N + R+ LL I + LP +F Sbjct: 423 DKYLEWLHDE----GFIGIILPESFLQNDSSILQ----RKKLLNEFDIMELWMLPGQIFE 474 Query: 400 RTNIATYLWILSNRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 N +T + I +KT+ + KV + N + K R + + I + + Sbjct: 475 N-NCSTIVLIAQKKKTQCECLTKIKVLVRNKESIRDYF-----KHRRWDFEFFINIQNSW 528 Query: 457 VS 458 + Sbjct: 529 KN 530 >gi|237752124|ref|ZP_04582604.1| type II restriction-modification enzyme [Helicobacter winghamensis ATCC BAA-430] gi|229376366|gb|EEO26457.1| type II restriction-modification enzyme [Helicobacter winghamensis ATCC BAA-430] Length = 894 Score = 68.8 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 117/397 (29%), Gaps = 48/397 (12%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L ++ LE T S DL + K+ + ++ + + Sbjct: 99 LFLCKITDELENTNDLQFSWRGNMQDSAFDLVDRLQKLYKTGMEKYLKQKITYVSKNDID 158 Query: 98 NNLESYIASFSD--NAKAIF--------EDFDFSSTIAR---LEKAGLLYKICKNFSGIE 144 + I + S IF DF+F + + +L I Sbjct: 159 KAFGASIKAISPRKAIYEIFTRLKYFSNGDFNFIEVYNKELFYKNFKILLPIVLKLEDTA 218 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + + + + +E I + + TP +V+ L D+ Sbjct: 219 FTKNADSNI-LGDYFESYIHDM----PQQEGQYFTPVPLVNFIIHSLPVLKDS------- 266 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + D +CG G FLT +K GQ+ +P + Sbjct: 267 ---KVLDFSCGAGHFLTQYAEI-------NKPYQKAKFLGQDKDPRLAKIAK-----IAK 311 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + I +L F+ +SNPP+ + + E + Sbjct: 312 IASFMHQTKMEILANDSLEC-GIEDSSFNVLISNPPYSVD--GFLNVLSDETRRSYELFN 368 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + +D F K G ++VL ++ L N + R LL + Sbjct: 369 DNLNIESNDTIQCF---FIEKASKALQSNGLLSLVLPNTILENDKGIPLNKPTREILLRD 425 Query: 385 DLIEAIVALPTDLFFRTNIATYLWI-LSNRKTEERRG 420 I AI L + FF+TN + + L +K + Sbjct: 426 FYIIAICELGSATFFKTNTSPIVLFALRKQKNTRAQT 462 >gi|218550410|ref|YP_002384201.1| type I restriction-modification system methyltransferase subunit [Escherichia fergusonii ATCC 35469] gi|218357951|emb|CAQ90595.1| putative type I restriction-modification system methyltransferase subunit [Escherichia fergusonii ATCC 35469] Length = 715 Score = 68.5 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 81/279 (29%), Gaps = 42/279 (15%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE 101 R + + + +K A F N Y +S GS N + E Sbjct: 209 RFRDVFD---------WQYVESHGDKAVAQIKAAFEEFKNHENYVVISDDGSRNPIFSKE 259 Query: 102 SYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 +++ S + N + + E + + + V ++ +++ Sbjct: 260 THLRLSVAKNYQDLLEAIQNLGPVKTND---------GKIAKEHGTLADVSGDLLGRVFD 310 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTG 217 +R G ++TP V + + D + + DPTCG+ Sbjct: 311 VFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSF 369 Query: 218 GFLTDAMNHVADCGS------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 GF + A++ + + G + P + M ++ Sbjct: 370 GFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAP 429 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++L+ + F +NPPFG Sbjct: 430 KAQIFYT------DNSLTTNALKPNSFDLICTNPPFGTP 462 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%) Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385 D ++LF+ L+ GGR IVL L SG+ +R +++ + D Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 624 Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429 +++A+++LP+D F T T + L R E + V + A Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPKQPEQFLPEPQTDVFMAVAET 684 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 L ++N + + +I+ Y E Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 715 >gi|256855107|ref|ZP_05560468.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8] gi|256709620|gb|EEU24667.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8] Length = 682 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 70/416 (16%), Positives = 138/416 (33%), Gaps = 89/416 (21%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSE-------YSLSTLGSTNTRNNLESYIASFS 108 +E + + V SF N + + TL +T T +N+ + S Sbjct: 255 KEDLKSSMEEDNRDGDIVIRKVNSFLNEKKIPKAKKDLIIRTLKNTLTTDNINKPVNGES 314 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 K +F ++ G+ YKI + ++ + G Sbjct: 315 Q-LKRVFSKI--------VDDLGIYYKI------------GLNTDFTGKLFNEMYSWLGF 353 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + + +TP V L L D+ ++D G+ G L AMN + Sbjct: 354 TQDKLNDVVLTPSYVATLLVKLARVDKDS----------YVWDFATGSAGLLVSAMNEML 403 Query: 229 -----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 + G E+ + + V M++ D S NI Sbjct: 404 NDAKAKITSPDELYKKEAEIKANQLLGLEILSSVYMLAVLNMIMMG-------DGSSNII 456 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-M 336 +L++ F K+ K + F P ++G+ M Sbjct: 457 NEDSLTQ----------------FNGKY-----GYGKTEEKFPATAFVLNPPYSAEGNGM 495 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 +F+ + ++ G A++++ S SEI + +L+++ + A + +P D Sbjct: 496 VFVKRALSMMDK-----GYASVIIQGSA-----GSGKASEINKEILKSNRLLASIKMPID 545 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 LF +++ TY+++ + E VQ I+ T+ + N K + D + Sbjct: 546 LFVGKSSVQTYIYVFRVGEAHENDYTVQFIDFTNDGYTRSNRKKSSNNLRDTDHAK 601 >gi|241758670|ref|ZP_04756784.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114] gi|241321181|gb|EER57377.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114] Length = 692 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 105/304 (34%), Gaps = 61/304 (20%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + G + + +TP V L L D+ ++D G Sbjct: 351 GKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLAKLARVNKDS----------YVWDFATG 400 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L AMN + + G EL + + + M++ Sbjct: 401 SAGLLVAAMNEMLIDAKNSISSPEELRKKEAQIKAGQLLGLELLSNVYMLAILNMILMG- 459 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 D S NI +L+ ++ + ++ F F Sbjct: 460 ------DGSSNILNKDSLTD---FDGKYGFGKTDHKFPADA------------------F 492 Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P + G+ M F+ + +E G AAI++ +S G + E R +L+ Sbjct: 493 ILNPPYSASGNGMNFVERALSMMEK-----GYAAIIIQNSA---GSGKAREINRR--ILQ 542 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 N+ + A + +P DLF +++ T +++ + E+ V+ I+ +D + N K Sbjct: 543 NNTLFASIKMPLDLFIGKSSVQTNIYVFKVGEPHEKDETVKFIDFSDDGYTRTNRKKASN 602 Query: 443 IIND 446 + D Sbjct: 603 NLKD 606 >gi|72080630|ref|YP_287688.1| putative type II DNA modification enzyme: methyltransferase [Mycoplasma hyopneumoniae 7448] gi|71913754|gb|AAZ53665.1| putative type II DNA modification enzyme: methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 669 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 54/360 (15%), Positives = 116/360 (32%), Gaps = 73/360 (20%) Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 E+ I S + K E + K + K+ + + + ++ Sbjct: 282 ETLINILSPSLKE--ERLNTPENGESRIKR-IFGKVVDDIG--YFFKNGLEIDFAGKLFN 336 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + G + + +TP V L L ++ ++D G+ G L Sbjct: 337 EMYSWLGFSEDKKNDVVLTPPYVAKLLAKLARVNQNS----------YVWDFATGSAGLL 386 Query: 221 TDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 AMN + + + G E+ P+ H + + M++ Sbjct: 387 VAAMNEMIADAEAKSKSAKELEAKKIKIKTEQLLGIEILPKIHMLAILNMILMG------ 440 Query: 270 RDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 D S N+ +L D + + NPP+ Sbjct: 441 -DGSSNLLHKDSLKDFDNKEKFPANAFVLNPPYSAPGNG--------------------- 478 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 M F+ + ++ G AI++ SS + +L+N+ + Sbjct: 479 -------MNFVEKALSMMK-----NGYGAIIIQSSA-----GSGKAKDFNTEILKNNTLL 521 Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 A + +P DLF +++ T++++ ++ + G V+ I+ ++ N K + D+ Sbjct: 522 ASIKMPIDLFLGKSSVQTHIYVFQVGQSHNKEGLVKFIDFSNDGYKRTNRKKAAINLVDN 581 >gi|324016950|gb|EGB86169.1| N-6 DNA Methylase [Escherichia coli MS 117-3] Length = 715 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 64/324 (19%) Query: 38 FTLLRRLECALEPTRSAV----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 + RL + V ++K ++ + + + ++ + + Sbjct: 146 MRVYTRLMQRFDAFHENVYRVTKDKVNDKNDIIEEVAKLLFLETFRLHHDEDLTFKDDEG 205 Query: 94 TNTR-------NNLESYIASFSDNAKAIFEDFD-----------------FSSTIA-RLE 128 R +ES+ KA FE+F FS RL Sbjct: 206 NTLRFRDVFNWQYVESHGDKAVAQIKAAFEEFKSHENYVVISDDGSRNPIFSKETHLRLS 265 Query: 129 KAGLLYKICK-------------NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 A + + + V ++ +++ +R G Sbjct: 266 VAKNYQDLLEAIQNLGPVKTNDGKIAKEHGTLADVSGDLLGRVFDVFLRANFESKG-GLG 324 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTGGFLTDAMNHVADCGS 232 ++TP V + + D + + DPTCG+ GF + A++ + Sbjct: 325 VYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSFGFGSVALSQIDKWID 384 Query: 233 ------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + G + P + M ++ + Sbjct: 385 FKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAPKAQIFYT------DN 438 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKK 304 +L+ + F +NPPFG Sbjct: 439 SLTTNALKPNSFDLICTNPPFGTP 462 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 31/148 (20%) Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385 D ++LF+ L+ GGR IVL L SG+ +R +++ D Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGRKDEKTGEF 624 Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429 +++A+++LP+D F T T + L R E + V + A Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 684 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYV 457 L ++N + + +I+ Y Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSAYK 712 >gi|168210993|ref|ZP_02636618.1| type IIS restriction enzyme M protein [Clostridium perfringens B str. ATCC 3626] gi|170710963|gb|EDT23145.1| type IIS restriction enzyme M protein [Clostridium perfringens B str. ATCC 3626] Length = 683 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 65/376 (17%), Positives = 128/376 (34%), Gaps = 82/376 (21%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 TL +T +N+ S K +F ++ G+ YKI Sbjct: 296 RTLKNTLLTDNINKVTNGESQ-LKRVFSKI--------VDDLGIYYKI------------ 334 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + G + + +TP V L L D+ Sbjct: 335 GLTTDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLVKLARVNMDS----------Y 384 Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257 ++D G+ G L AMN + + + G E+ + + + Sbjct: 385 VWDFATGSAGLLVAAMNEMLIDAKEKIKSPEELEQKNIKIKAEQLLGLEVLSSIYMLAIL 444 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M++ D S NI +L+ N FGK +K Sbjct: 445 NMILMG-------DGSSNILNRDSLND----------FNGNYGFGKTEKKFPATA----- 482 Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 F P +DG+ M+F+ + + G G A+I++ +S G + E Sbjct: 483 ------FILNPPYSADGNGMVFVEKALSMM-----GKGYASIIIQNSA---GSGKAIEYN 528 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 R +L+ + + A + +P DLF +++ T +++ + ++ V+ I+ ++ + Sbjct: 529 KR--ILKKNTLLASIKMPIDLFVGKSSVQTNIYVFRVAEPHQKDDIVKFIDFSNDGYTRT 586 Query: 436 NEGKKRRIINDDQRRQ 451 N K + D R + Sbjct: 587 NRKKASNNLKDTDRAK 602 >gi|307312925|ref|ZP_07592553.1| N-6 DNA methylase [Escherichia coli W] gi|306907093|gb|EFN37600.1| N-6 DNA methylase [Escherichia coli W] gi|315063606|gb|ADT77933.1| putative type I restriction-modification system methyltransferase subunit [Escherichia coli W] gi|320200586|gb|EFW75172.1| N-6 DNA methylase [Escherichia coli EC4100B] gi|323380313|gb|ADX52581.1| N-6 DNA methylase [Escherichia coli KO11] Length = 715 Score = 68.1 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 64/324 (19%) Query: 38 FTLLRRLECALEPTRSAV----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 + RL + V ++K ++ + + + ++ + + Sbjct: 146 MRVYTRLMQRFDAFHENVYRVTKDKVNDKNDIIEEVAKLLFLETFRLHHDEDLTFKDDEG 205 Query: 94 TNTR-------NNLESYIASFSDNAKAIFEDFD-----------------FSSTIA-RLE 128 R +ES+ KA FE+F FS RL Sbjct: 206 NTLRFRDVFNWQYVESHGDKAVAQIKAAFEEFKSHENYVVISDDGSRNPIFSKETHLRLS 265 Query: 129 KAGLLYKICK-------------NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 A + + + V ++ +++ +R G Sbjct: 266 VAKNYQDLLEAIQNLGPVKTNDGKIAKEHGTLADVSGDLLGRVFDVFLRANFESKG-GLG 324 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTGGFLTDAMNHVADCGS 232 ++TP V + + D + + DPTCG+ GF + A++ + Sbjct: 325 VYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSFGFGSVALSQIDKWID 384 Query: 233 ------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + G + P + M ++ + Sbjct: 385 FKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAPKAQIFYT------DN 438 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKK 304 +L+ + F +NPPFG Sbjct: 439 SLTTNALKPNSFDLICTNPPFGTP 462 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%) Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385 D ++LF+ L+ GGR IVL L SG+ +R +++ + D Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 624 Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429 +++A+++LP+D F T T + L R E + V + A Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 684 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 L ++N + + +I+ Y E Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 715 >gi|308270913|emb|CBX27523.1| hypothetical protein N47_H23450 [uncultured Desulfobacterium sp.] Length = 1001 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 61/421 (14%), Positives = 124/421 (29%), Gaps = 109/421 (25%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS---TIARLEKAGLLYKIC 137 YN+ + + +NL ++ K IF + + + L A +L ++ Sbjct: 276 YNSGLFHFTKEKDRENYDNLTPFLQIDDKPLKDIFNNLYYPESPYEFSVLS-ADILGQVY 334 Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + F G + + EV + + TP +V + Sbjct: 335 EKFLGKVIRLTAGHQAKIEE---------KPEVRKAGGVYYTPGYIVDYIVKNTVGKLVE 385 Query: 198 LFKESPGMIRT---LYDPTCGTGGFLTDAMNHVADCGSHHKIPP---------------- 238 K P + + DP CG+G FL A + D I Sbjct: 386 GKKPGPRGGVSHLKILDPACGSGSFLIGAYQFLLDWHRDEYINDGPENWSKGKTPRIYQS 445 Query: 239 ----------------ILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------ 270 +G +++ + V +L++ LE + + Sbjct: 446 RKGEWRLTTEERKRILTNNIYGVDIDHQAVEVTKLSLLLKVLEGEDEQSIGKQMLMFQKR 505 Query: 271 ---DLSKNIQQGSTLSKDLF------------------------------TGKRFHYCLS 297 DLS NI+ G++L F F + Sbjct: 506 VLPDLSNNIKCGNSLIGPDFYEHQPMSLLGEGEIFRVNAFDWNAEFAEIMKDGGFDAVIG 565 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPP+G + + + + + + R M+ ++ G Sbjct: 566 NPPWGAELSERELSYLRRTNKDIIVRMIDS-----------FMYFIHQSSQKVKTLGYFG 614 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 ++L L+ ++RR+++ N I+ I+ + D+F + + + + I N Sbjct: 615 MILPDVLLYQIDNE----KLRRYIINNFRIKNILNM-GDVFDKVSRPSSILIFENSNPST 669 Query: 418 R 418 Sbjct: 670 Y 670 >gi|303258165|ref|ZP_07344173.1| type IIS restriction enzyme M protein [Burkholderiales bacterium 1_1_47] gi|302859184|gb|EFL82267.1| type IIS restriction enzyme M protein [Burkholderiales bacterium 1_1_47] Length = 686 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 51/309 (16%), Positives = 97/309 (31%), Gaps = 61/309 (19%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + G + + +TP V L L ++D G Sbjct: 345 GKLFNEMYGWLGFSQDKLNDVVLTPSYVAKLLVKLARVD----------RNSYVWDFATG 394 Query: 216 TGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L AMN + + G E+ P + + + M++ Sbjct: 395 SAGLLVAAMNEMLIDAKNHITSPDELARKEATIRAEQLLGLEVLPSIYMLAILNMILMG- 453 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 D S NI +L D F P F Sbjct: 454 ------DGSSNILNKDSL-HDFDGKYGFGKITEKFPASA--------------------F 486 Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 P + G+ M+F+ + G AAI++ S G + + R +L+ Sbjct: 487 VLNPPYSAAGNGMIFVEKALGMMNK-----GYAAIIIQGSS---GNGKAVDYNRR--ILK 536 Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 + A + +P DLF +N+ TY+++ + + V+ I+ ++ + N K Sbjct: 537 KHTLLASIKMPIDLFIGKSNVQTYVYVFRVNEPHQADDTVKFIDFSNDGYTRTNRKKASV 596 Query: 443 IINDDQRRQ 451 + D + Sbjct: 597 NLKDTDHAK 605 >gi|260061984|ref|YP_003195064.1| type II restriction enzyme, methylase subunit [Robiginitalea biformata HTCC2501] gi|88783546|gb|EAR14717.1| type II restriction enzyme, methylase subunit [Robiginitalea biformata HTCC2501] Length = 1006 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 66/467 (14%), Positives = 137/467 (29%), Gaps = 115/467 (24%) Query: 38 FTLLRRLECALE---PTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGS 93 F + E L + + +++ + + + Y Y S Y Sbjct: 235 FLFIFFAEDRLLLPPNSIRTILQQWTDLKDKYDEYFPLYERFQKYFGYLNSGY------- 287 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 ++++ +Y + I + LLY+ +N S + + + Sbjct: 288 KGKKHDIFAYNGGLFEE-DEILDSITIDD--------NLLYEHTRNLSNYDFESEVSVNI 338 Query: 154 VMSNIYEHLIRRF--------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + +I+EH + + F TP+ + + Sbjct: 339 -LGHIFEHSLTEIENIQAEIEGAEIDKSKTKRKKDGVFYTPKYITKYIVENTVGKLCEEK 397 Query: 200 KESPGMIR---------------------------TLYDPTCGTGGFLTDAMNHVADCGS 232 K + T+ DP CG+G FL A+ + Sbjct: 398 KAELDITDEAYQPAKQRSRKRLQKLQDYRDWLLQLTICDPACGSGAFLNQALEFLIAEHR 457 Query: 233 HH------------------KIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLS 273 + G ++ E+ + + +R + LS Sbjct: 458 YIDELSAKYNKDALILSDVENTILENNLFGVDINEESVEIAKLSLWLRTAQKGRKLTSLS 517 Query: 274 KNIQQGSTLSKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 NI+ G++L D F F + NPP+G K +E Sbjct: 518 DNIKCGNSLIDDPKVAGDKAFNWQEEFPEVFEKGGFDVVIGNPPYGAKLNTSAINYFREV 577 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 +G S+ LF+ NKL P ++ ++ L N A E Sbjct: 578 YKTVIG--------HSEAYYLFIDITINKLLQPDAL---LGFIIPNAWLSNKYA----KE 622 Query: 377 IRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKV 422 +RR +L + +++ +F ++ T + +++ + + +V Sbjct: 623 LRRLVLFETRMLSLINFNRQIIFEDASVETSI-VITKKVNPKPDDRV 668 >gi|260592072|ref|ZP_05857530.1| type IIS restriction enzyme M protein [Prevotella veroralis F0319] gi|260535950|gb|EEX18567.1| type IIS restriction enzyme M protein [Prevotella veroralis F0319] Length = 683 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 68/459 (14%), Positives = 144/459 (31%), Gaps = 85/459 (18%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 + TL +T T N+ S K + F++ + L + Sbjct: 295 IRTLQNTLTAENVNKVENGESQ-LKRV-----FTNIVDDLG---------------IYYK 333 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + ++ + G + + +TP V L L D+ Sbjct: 334 IGLTTDFTGKLFNEMYGWLGFSQDKLNDVVLTPSYVATLLVKLARVNKDS---------- 383 Query: 208 TLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCV 256 ++D G+ G L AMN + + G EL P + + + Sbjct: 384 YVWDFATGSAGLLVAAMNEMLIDAKNNIDSPNELAIKEAHIKAEQLLGIELLPSVYMLAI 443 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 M++ D S NI +L ++ Y + Sbjct: 444 LNMILMG-------DGSSNILNKDSLKD---FDGKYGY------------------GRPK 475 Query: 317 KNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + F P S G+ M F+ + ++ G AAI++ +S G + E Sbjct: 476 EQFPADAFVLNPPYSSLGNGMNFVEKALSMMQK-----GYAAIIIQNSA---GSGRATEY 527 Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 R +L+ + + A + +P DLF +++ T +++ + ++ V+ I+ ++ + Sbjct: 528 NKR--ILKRNTLLASIKMPIDLFIGKSSVQTNIYVFRVNEAHKKDDVVKFIDFSNDGYTR 585 Query: 435 RNEGKKRRII--NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 N K + D + + +++ GK S++ Y + + Sbjct: 586 TNRKKASVNLRDTDHAKERYEEVFNLVRFGK-SKLNFLTEKEYYEGTIDPNSGADWNQTA 644 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531 + + +S ++LK + G Sbjct: 645 PIDTKPTLADFKKTVSDYLAWEVSNLLKQKADEEDSLGK 683 >gi|164688713|ref|ZP_02212741.1| hypothetical protein CLOBAR_02360 [Clostridium bartlettii DSM 16795] gi|164602189|gb|EDQ95654.1| hypothetical protein CLOBAR_02360 [Clostridium bartlettii DSM 16795] Length = 658 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 97/332 (29%), Gaps = 75/332 (22%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + + TP VV + D + P + D +CG G FL A + Sbjct: 21 KERGIYYTPYVVVKYILDNTIGKHDIVQNPYPK----ILDMSCGCGNFLIQAYTMLYKKF 76 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN---------------- 275 + +GQ+ +C + + +++ + N Sbjct: 77 YDNIDKLNQR-YGQDF------ICKEDIGLHIIKNCIFGVDTDNDALMILENELKKILKK 129 Query: 276 ------------------------------IQQGSTLSKDL---FTGKRFHYCLSNPPFG 302 I G +L DL F +F Y + NPP+ Sbjct: 130 ELRETYKHKPLIRDDDLDEILDEEYLDKLNIFCGDSLKNDLSEVFGVDKFDYIIGNPPY- 188 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 + ++ +K F D F + + L G Sbjct: 189 ----VGQKYLDNNYKKFLYKEFEEVYKNKGDLYFCFYKKILDLLRQDGKSGIITPRYFMQ 244 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGK 421 SP +R +L+ N IE I+ L +LF +A+ + I ++ + + Sbjct: 245 SP--------SGKYLRSYLVNNSQIEKIIDFLGANLFTGLGVASCIVIFGHKIETDNKNN 296 Query: 422 VQ-LINATDLWTSIRNEGKKRRIINDDQRRQI 452 L + +I+ IN + ++I Sbjct: 297 CLELYKIKNENINIKKIANLEDYINKENFKKI 328 >gi|218891096|ref|YP_002439962.1| hypothetical protein PLES_23591 [Pseudomonas aeruginosa LESB58] gi|218771321|emb|CAW27086.1| hypothetical protein PLES_23591 [Pseudomonas aeruginosa LESB58] Length = 707 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 23/183 (12%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI---RTL 209 ++ +++ +R G ++TP V + + + Sbjct: 297 DLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIQQDNSAMERLTAGAFRF 355 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH------------HKIPPILVPHGQELEPETHAVCVA 257 DPTCG+ GF + A++H+ H + G + P + Sbjct: 356 CDPTCGSFGFGSVALSHIESVVDHLGGMSDAQKKALKQTLRDTAFTGADAAPRMVMLARV 415 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M ++ ++L+ F F +NPPFG + D KE K Sbjct: 416 NMALQGAPKAKIFYT------DNSLTTKAFKANSFDLICTNPPFGT-PKFTSDKKGKESK 468 Query: 318 NGE 320 Sbjct: 469 ERY 471 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 31/151 (20%) Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385 D ++LF+ L GGR IVL L SG+ +R +++ + D Sbjct: 565 DPAVLFIDRCLQLLRP----GGRLLIVLPDGVL----CNSGDRYVREYIMGKKDEITGQF 616 Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429 +++A+++LP D F T T + L R E +G V + A Sbjct: 617 VGGKAIVKAVLSLPADTFKLSGTGAKTSVLYLQKRHASNEHPEQFLPEPQGDVFMAVAET 676 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 L ++N + + +I+ Y E Sbjct: 677 LGYVVKNNIEDYSAGVPNDLDKIVGAYKRGE 707 >gi|323160769|gb|EFZ46704.1| type I restriction-modification system DNA methylase domain protein [Escherichia coli E128010] Length = 40 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 25/37 (67%), Positives = 28/37 (75%) Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 EKD E+G VGYEINFNR+FYQY P R+L ID E K Sbjct: 3 EKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRETKS 39 >gi|90962803|ref|YP_536718.1| Type II restriction-modification system methylation subunit [Lactobacillus salivarius UCC118] gi|90821997|gb|ABE00635.1| Type II restriction-modification system methylation subunit [Lactobacillus salivarius UCC118] gi|300215417|gb|ADJ79830.1| Type II restriction-modification system methylation subunit [Lactobacillus salivarius CECT 5713] Length = 694 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 91/305 (29%), Gaps = 69/305 (22%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E + + +TPR V L L M ++D G+GGFL AM+ Sbjct: 372 SIENDKQNDVVLTPRYVTKLMVKL----------TRTDMNSYVWDTAMGSGGFLVSAMDE 421 Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + G EL + + V M++ + ++ + Sbjct: 422 MFKDAKEKIQDKKKLEEKIEHIKKEQLLGVELLGNIYILAVLNMILMGDGASKMKNGDSH 481 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + L NPP+ + Sbjct: 482 KIYDD-------LEFPANVFLLNPPYSADGKG---------------------------- 506 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALP 394 F+ +K++ + L AGSG + +L+ + + A + +P Sbjct: 507 FNFVAEAFSKMQKGY-----------GAILIQENAGSGTGLPYTKKILDYNTLVASIHMP 555 Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 DLF +++ T +++ + + V I+ + S +N K + +N Sbjct: 556 NDLFNGKSSVQTAIYVFKVNEPHNVKKAVTFIDFSKDGYSRQNRKKSSQEVNLRDTDNAK 615 Query: 454 DIYVS 458 Y Sbjct: 616 ARYQE 620 >gi|257126730|ref|YP_003164844.1| methyltransferase small [Leptotrichia buccalis C-1013-b] gi|257050669|gb|ACV39853.1| methyltransferase small [Leptotrichia buccalis C-1013-b] Length = 691 Score = 67.7 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 68/536 (12%), Positives = 151/536 (28%), Gaps = 56/536 (10%) Query: 44 LECALEPTRSAVREKYL--AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101 L ++ + V E Y + K + Y ++ + Sbjct: 87 LSKMIKELKLEVDEMYRLLKLNNDFEKNDILKKDSNLLTYGDLIVHMNKIYQKR-----N 141 Query: 102 SYIASFSDNAKAIFEDFDFSS-TIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNI 158 Y+ + + F + L+K + + KN S I + + + Sbjct: 142 KYVHG-AFEINENIDKEKFEKYVLDTLDKESAILLVLKNAFISKIPYYLIEKEELTKNYK 200 Query: 159 -YEHLIRRFGSEVS----EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 YE L F + + F TP + L K+ + DP+ Sbjct: 201 KYEELYNNFFENIDNEIIKEKSQFFTPIAISQKLVD----DLKHLNKKFEKENIKILDPS 256 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-ELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G + + + + S + +++ + C M +++ + Sbjct: 257 CGFGILTINLLEKIVEISSDSNKRINKIEVDMIDIDEKCIENCKIIMKEFLEKNNLNDLV 316 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 N G+ L + +++ + + NPPF K +++K + E + K Sbjct: 317 EVNYIIGNYL--NYEIKRKYDFIVQNPPFKKIKKEEKVKYDGE------------ITKYI 362 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 +G K + G + + L +R++L N + + Sbjct: 363 NGQANLYHLFIIKSLKLLDEKGILFTISPKNFLSGKYTE----NLRKFLFNNYSL-TRLH 417 Query: 393 L---PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN---EGKKRRI-IN 445 L +F + + RK + + N + + R +K I ++ Sbjct: 418 LFDERKKIFKNIIQEICITQIEKRKHKNIK---ISYNGSKPFELDREILFLKRKNNILLS 474 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 R + + + F + KV++ L + + + Sbjct: 475 PRNREE-----SNFIKSINEIFVKNNVFSFHPGKVVQFRVDKKNLSSEKFNKEKKQVPLL 529 Query: 506 KLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560 L + L + + E +K+ L + K Sbjct: 530 VPKHLKNERIEYEDLDKKKNKSISIFYNEETQNLFLKNKRYIILNKNSGKEEKKLI 585 >gi|329575570|gb|EGG57107.1| conserved domain protein [Enterococcus faecalis TX1467] Length = 113 Score = 67.7 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 4/75 (5%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L T E+Y Sbjct: 3 AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62 Query: 65 SNIDLESFVKVAGYS 79 + +K Sbjct: 63 QTELYKELLKDEDSR 77 >gi|182624917|ref|ZP_02952696.1| type IIS restriction enzyme M protein [Clostridium perfringens D str. JGS1721] gi|177909923|gb|EDT72333.1| type IIS restriction enzyme M protein [Clostridium perfringens D str. JGS1721] Length = 683 Score = 67.7 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 65/376 (17%), Positives = 128/376 (34%), Gaps = 82/376 (21%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 TL +T +N+ S K +F ++ G+ YKI Sbjct: 296 RTLKNTLLTDNINKVTNGESQ-LKRVFSKI--------VDDLGIYYKI------------ 334 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ + G + + +TP V L L D+ Sbjct: 335 GLTTDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLVKLARVNKDS----------Y 384 Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257 ++D G+ G L AMN + + + G E+ + + + Sbjct: 385 VWDFATGSAGLLVAAMNEMLIDAKEKIKSPEELEQKNLKIKAEQLLGLEVLSSIYMLAIL 444 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 M++ D S NI +L+ N FGK + Sbjct: 445 NMILMG-------DGSSNILNRDSLND----------FNGNYGFGKT-----------DE 476 Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 F P +DG+ M+F+ + +E G A+I++ +S G + E Sbjct: 477 KFPATAFILNPPYSADGNGMVFVEKALSMMEK-----GYASIIIQNSA---GSGKAIEYN 528 Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 R +L+N+ + A + +P DLF +++ T +++ + ++ V+ I+ ++ + Sbjct: 529 KR--ILKNNTLLASIKMPIDLFIGKSSVQTNIYVFRVAEPHQKDEIVKFIDFSNDGYTRT 586 Query: 436 NEGKKRRIINDDQRRQ 451 N K + D R + Sbjct: 587 NRKKASNNLRDTDRAK 602 >gi|145631344|ref|ZP_01787116.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae R3021] gi|144983129|gb|EDJ90629.1| putative type I restriction-modification system methyltransferase subunit [Haemophilus influenzae R3021] Length = 169 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 22/166 (13%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58 M A L IW+ A D+ G DF + +L R + A E Sbjct: 1 MVAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTNYIEADDESVN 60 Query: 59 YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS------ 108 Y I + +K GY Y S+ + + + NT NL + + FS Sbjct: 61 YAKLPDEIITPDIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNTELKQIFSDIENSA 119 Query: 109 ---DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL 145 + + I F DF +T RL +K L + K + ++ Sbjct: 120 TGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDF 165 >gi|218297123|ref|ZP_03497794.1| N-6 DNA methylase [Thermus aquaticus Y51MC23] gi|218242537|gb|EED09075.1| N-6 DNA methylase [Thermus aquaticus Y51MC23] Length = 1214 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 105/354 (29%), Gaps = 61/354 (17%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLY-KICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 F + ++ F T + L ++ + + V ++ ++Y H Sbjct: 453 FGRAEREVYAHFFAEGTFDWYRPSRPLALELLWKLAHYDFR--DVDQDIIGHLYAH---Y 507 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 E + TP +VV + F+ TL DP CG+G FL A Sbjct: 508 ATEEHRHHTGMYYTPPEVVDYILDRV------GFRGKEVATATLLDPACGSGTFLVRAAR 561 Query: 226 HVADCGSHHK------------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPR---- 269 V + G ++ P + +LI+ ++ Sbjct: 562 RVLEAFRDKGGKIPEENLPFALKAVAESLVGLDVNPFACYLAEINLLIQVIDLLEGIKHL 621 Query: 270 ----RDLSKNIQQGSTLSK----------DLFTGKR-------FHYCLSNPPFGKKWEKD 308 + TL DL+ ++ F + + NPP+ + Sbjct: 622 GQDVGLDRFRVYNTDTLVARFPSAAFLDGDLWPEEKVKLTPEAFDFVVGNPPYVRADAPG 681 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 KN R G + F+ + GG+ +++S S Sbjct: 682 MKEYRDAVKNQLPLREGVEGVLQKKWDLYVPFVALALEWAKP----GGKVGLLVSVSI-- 735 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERR 419 + S IR LL++ L+E + L LF + + ++ E Sbjct: 736 --ESASFAEAIRNRLLQHTLLE-VAHLNGKALFPDAVVDNTILVVQKASPPEGH 786 >gi|224456727|ref|ZP_03665200.1| putative N-6 DNA methylase [Francisella tularensis subsp. tularensis MA00-2987] gi|254874474|ref|ZP_05247184.1| type I restriction system endonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|254840473|gb|EET18909.1| type I restriction system endonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|282158819|gb|ADA78210.1| putative N-6 DNA methylase [Francisella tularensis subsp. tularensis NE061598] Length = 388 Score = 67.3 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 58/347 (16%), Positives = 99/347 (28%), Gaps = 58/347 (16%) Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DL 286 + G + P V M++ D I L + Sbjct: 41 EKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG-------DGHNGIHHNDGLLNVNG 93 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN---------------------------- 318 RF L+NPPFG KD V +E K Sbjct: 94 IFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNF 153 Query: 319 GELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 G+ R +IS +LF+ + L+ GGR IVL L + + Sbjct: 154 GKPIRSLYKTGEISVATEVLFVERCLDLLK----AGGRMGIVLPEGVLNSSNLQ----KA 205 Query: 378 RRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 R + I IV+LP DLF + + T L L + + + +++ Sbjct: 206 REYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKK----------FTVEEQEQYETVK 255 Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495 + +K + + + E + R + + LD+T + Sbjct: 256 TQAEKEAEQKYQPQLLEIQQKIDFEKSIKQHITKLRKALKTK-TAKNKENLQLTLDETIV 314 Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 E ++ + + Q I E + E K+ Sbjct: 315 EHTEYKKKVKQYKAQLKELEAKQQEEAKQLIKQKFDYEIPIAEIEKA 361 >gi|166363559|ref|YP_001655832.1| adenine specific DNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166085932|dbj|BAG00640.1| adenine specific DNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 998 Score = 67.3 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 55/458 (12%), Positives = 136/458 (29%), Gaps = 59/458 (12%) Query: 105 ASFSDNAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + + + + E F F ++ L Y + + + ++ + + IYE+ Sbjct: 233 NNIARELQGVIETF-FTGNTKRNTLGTIERYYAVIRR-TAANIYNHHEKQKFLKAIYENF 290 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + + ++ TP ++V + K + DP GTG F+T Sbjct: 291 YKAYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFRKLLADPGVEILDPATGTGTFIT 350 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + ++ + H E+ + + + + + ++I T Sbjct: 351 ELIEYL--PKDKLRYKYKHEMHCNEVAILPYYIANLNIEFTYKQKMGEYEEFEHICFVDT 408 Query: 282 LSKDLFTGKRFH---------------------YCLSNPPFGKKWEKDKDAVEKEHKNGE 320 L F K+ + NPP+ + + D + Sbjct: 409 LDHAAFHLKQMDLFAMSVENTQRIQNQNDRNISVIIGNPPYNANQQNENDNNKNRKYPAI 468 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 R + S L + ++ G A + +SS + Sbjct: 469 DKRIKDTYIEESTAQKTKLYDMYSRFFRWATDRLGENGIIAFITNSSFIDARTFDGF--- 525 Query: 377 IRRWLLENDLIEA-IVALPTDL------------FFRTNIATYLWILSNRKTEERRGKVQ 423 R ++EN+ E I+ L ++ F + ++ R++ ++ Sbjct: 526 --RKVVENEFSEIYIIDLGGNVRKNPKLSGTTHNVFGIQTGVAISLIVKRESNNLPCRIL 583 Query: 424 LINATDLWTSIRNE----GKKRRIINDDQRRQILDIYVSREN---GKFSRMLDYRTFGYR 476 +L T+ + K ++ + I D + F+ ++ + Sbjct: 584 YTRRPELDTASQKLEFLSSTKLNQLDFEHI--IPDKKHNWIEQSDNDFNDLIPVVDKNTK 641 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 +K ++ F G++ + + L Sbjct: 642 LLKNKTDIQALFEFFSLGVSTNRDEWVFEDDEQLLSKK 679 >gi|162448117|ref|YP_001621249.1| site-specific DNA-methyltransferase [Acholeplasma laidlawii PG-8A] gi|161986224|gb|ABX81873.1| site-specific DNA-methyltransferase [Acholeplasma laidlawii PG-8A] Length = 559 Score = 67.3 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 39/267 (14%) Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 +L+D G GGFL +N + +G E+ HA+ + I + Sbjct: 114 GDSLFDLGSGLGGFLIGTLNLAQERSIELSA-----LYGVEINYNQHALSKMVLEIFTFD 168 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRF 324 S + I + L+ D + ++ PP G K D + + R Sbjct: 169 SSVK----SKINYANILT-DKYEL-TYNKGFVYPPLGMKLMGNDLNYISIFKNIVLSTRN 222 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 +F+ L + L+ RA +++ LF+ + + + R +L++ Sbjct: 223 SV--------EWIFIDKLLSNLKGEDA---RAVALVTGRTLFS----AVDRDYRNEILKS 267 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444 ++E I+ LP + T+I +L I S V+L +A+ + + +K Sbjct: 268 GMLEGIIELPQGIVDNTSIKLFLLIFSKN-----NKNVRLFDAS-----MFSSKRKFNGP 317 Query: 445 NDDQRRQILDIY--VSRENGKFSRMLD 469 +QI+D Y S + D Sbjct: 318 IKVDVKQIIDFYYGNDVAKKDISELTD 344 >gi|300858886|ref|YP_003783869.1| hypothetical protein cpfrc_01469 [Corynebacterium pseudotuberculosis FRC41] gi|300686340|gb|ADK29262.1| hypothetical protein cpfrc_01469 [Corynebacterium pseudotuberculosis FRC41] gi|302206586|gb|ADL10928.1| Hypothetical protein CpC231_1461 [Corynebacterium pseudotuberculosis C231] gi|308276829|gb|ADO26728.1| Hypothetical protein CpI19_1468 [Corynebacterium pseudotuberculosis I19] Length = 72 Score = 67.3 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 10/82 (12%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 M YE+L++RF + + +F TPR VVHL T LL P T+YDPTC Sbjct: 1 MGAAYEYLLKRFVDDAGQKVGEFFTPRSVVHLITRLL----------KPQENETVYDPTC 50 Query: 215 GTGGFLTDAMNHVADCGSHHKI 236 TGG L + + V G + Sbjct: 51 STGGMLFEPVAAVDANGGDTRT 72 >gi|323463227|gb|ADX75380.1| putative DNA methyltransferase [Staphylococcus pseudintermedius ED99] Length = 586 Score = 66.9 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 28/269 (10%) Query: 158 IYEHLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +E + F ++ TP +VV+L + D + + + DP+ GT Sbjct: 51 AFEKFMYFDFDKVDTKNFGITFTPTNVVNLLFDETIGEDFKKYSQK-----KVLDPSIGT 105 Query: 217 GGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLS 273 G F + + + +G +++ E C +++ L D DL Sbjct: 106 GNFFIKFLIKQKELDKNFSLVEFIENNLYGYDIKIENIFFCKLNLILLCLIFDEDVEDLK 165 Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 NI + + + F + NPP+ K + K+ + K + Sbjct: 166 FNIFHSDIILEYLNGTLETNFDLIIGNPPY-VKQQNIKENYREILKRNFDTIYS------ 218 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + N GR ++ + L A +R L++++ IE I+ Sbjct: 219 ---NYNLYYSFIELSTKLLNENGRIIFLVPNYILKIKSAQY----LRELLIKDNWIEKII 271 Query: 392 ALPTD-LFFRTNIATYLWILSNRKTEERR 419 T+ +F + I TY ILS +K + Sbjct: 272 DFETNKIF--SGIDTYTMILSMKKNSDTT 298 >gi|253578942|ref|ZP_04856213.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849885|gb|EES77844.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 274 Score = 66.9 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 10/145 (6%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + +Y L + F TP DV L + D + K ++ Sbjct: 88 DQDFLGRLYMSL-----ELGNHWKGQFFTPYDVCRCMAELTI--HDNMQKLQNKEWVSVN 140 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP-R 269 DP CG G L A N G +++ + +++ T +C + + Sbjct: 141 DPACGAGATLIAAANTFRRKGFNYQTQVL--FVANDIDRVTAQMCFIQLSLLGCPGYVAV 198 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHY 294 + N G+TL + + F Y Sbjct: 199 ANTLSNPVAGNTLMPEERPEQEFWY 223 >gi|332664158|ref|YP_004446946.1| hypothetical protein Halhy_2190 [Haliscomenobacter hydrossis DSM 1100] gi|332332972|gb|AEE50073.1| hypothetical protein Halhy_2190 [Haliscomenobacter hydrossis DSM 1100] Length = 974 Score = 66.9 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 70/368 (19%), Positives = 114/368 (30%), Gaps = 63/368 (17%) Query: 103 YIASFSDNAKAIFEDFDFSSTI--------ARLEKAGLLYKICKNF-SGIELHPD-TVPD 152 YI +F + + F+ + L KA L + F + IE H Sbjct: 238 YINAFLEEL-----NIKFNGKVFDLKPEEKQELGKAN-LSYVAAVFDADIEGHQYVLWKL 291 Query: 153 RVMSNIYEHLIRRFGSEV-SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + LI + TP +V+L + D A S G + D Sbjct: 292 YAFNFLPIELISGIYEAFLKKEKGVVYTPPYLVNLLIDECMPLDKAEEMFSTG-TFKVLD 350 Query: 212 PTCGTGGFLTDAMNHVADCG----------------SHHKIPPILVPHGQELEPETHAVC 255 P CG+G FL A+ + K G ++E + Sbjct: 351 PACGSGIFLVAALKRMVQWQAILNYKATESIDYPNIETIKRIVRDNIFGVDIEEGATFIS 410 Query: 256 VAGMLIRRLE----------SDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKK 304 + + I + +NI + D + F + NPPF Sbjct: 411 IFSLCIAICDKLSPMQIWNELRFDDLGEENIVTDNFFGVFDQLKAQGFDLVIGNPPFNPP 470 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANKLELPPNGGGRAAIVLS- 361 K + P IS G + + +K GG+ +L Sbjct: 471 SGFSKLGYFDLIQKNFSI-----TPNLLISGGQLA--LFFLDKAVELRRSGGKICFILPA 523 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVA---LPTDLFFRTNIAT-YLWILSNRKTEE 417 +S L+N +A R + +EN +E I L LF + I ++ + +E Sbjct: 524 NSWLYNSKATP----YRTFFMENYRVEKIFDFTHLSDRLFHGSATPAVCATIATDLQPKE 579 Query: 418 RRGKVQLI 425 R GKV I Sbjct: 580 RLGKVLHI 587 >gi|268324537|emb|CBH38125.1| probable DNA methylase [uncultured archaeon] Length = 1016 Score = 66.9 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 54/394 (13%), Positives = 105/394 (26%), Gaps = 105/394 (26%) Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR---- 165 IF+ F+ L +L I + + + ++ N+YE + + Sbjct: 281 GIFD-FETDRITPALTIDDKVLKMIIQSLYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 339 Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 EV + + TP+ +V + A + DP CG+ Sbjct: 340 TAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVENTVGKLIAGKTPEEIAHIKILDPACGS 399 Query: 217 GGFLTDAMNHVADCGSHHKIPPIL----------------------------VPHGQELE 248 G FL A ++ + G +++ Sbjct: 400 GSFLIGAYTYLLRYHLDWYVNNKPKKHKEAVFQVKADEWYLTTAEKKRILLDNIFGVDID 459 Query: 249 PETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLSKDLF------ 287 + V +L++ LE + +L NI+ G++L + Sbjct: 460 SQAVEVTKMSLLLKVLEHESRESIDQQMKLGLEGVLPNLGDNIKCGNSLIGPEYYESEQQ 519 Query: 288 -----------------TGKR-----------FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 +R F + NPP+ + + A + Sbjct: 520 GSLFNEEEMRRVNVFDWEDERKGFGKILKKGGFDAVIGNPPYVRIQTMKEWASTEVEFYK 579 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + S G+ + + N GR +L +A G +R Sbjct: 580 KHH------ASASKGNYDIYVVFVERALKLLNVRGRMGYILPHKFF---QAKYG-QPLRE 629 Query: 380 WLLENDLIEAIVALPT-DLFFRTNIATYLWILSN 412 + ++ IV +F T L L Sbjct: 630 LIARGKHLDKIVHFGDQQVFAGATTYTCLLFLEK 663 >gi|21914203|gb|AAM81323.1|AF522187_1 BpmI endonuclease-methyltransferase fusion protein type IIG [Bacillus pumilus] Length = 1009 Score = 66.9 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 68/460 (14%), Positives = 129/460 (28%), Gaps = 109/460 (23%) Query: 39 TLLRRLECALEPTRSAV--REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 LR E + + Y + + F N+ + Sbjct: 232 IFLRVCEDRTIEKYETIKSIKNYEELKD-------LFQKSDRKF-NSGLFDF-------I 276 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRV 154 + L + S+ IF D F + + +L +I + F G E+ ++ Sbjct: 277 DDTLLLEVEIDSNVLIEIFSDLYFPQSPYDFSVVDPTILSQIYERFLGQEIIIESGGTFH 336 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 ++ EV+ TP+ +V L P K + + D C Sbjct: 337 ITE---------SPEVAASNGVVPTPKIIVEQIVKDTLTPLTEGKKFNELCNLKIADICC 387 Query: 215 GTGGFLTDAMNHVADCG--------------------------SHHKIPPILVPHGQELE 248 G+G FL + + + + + G ++ Sbjct: 388 GSGTFLISSYDFLVEKVMEKIIEENIDDSDLVYETEEGLILTLKAKRNILENNLFGVDVN 447 Query: 249 PETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLF------ 287 P V +L++ LE + DL+ I+ G++L + F Sbjct: 448 PYAVEVAEFSLLLKLLEGENEASVNNFIHEHEDKILPDLTSIIKCGNSLVDNKFFEFMPE 507 Query: 288 ------------------------TGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELG 322 F + NPP+ + K E E+ + Sbjct: 508 SLEDDEILFKANPFEWEEEFPDIMANGGFDAIIGNPPYVRIQNMKKYSPEEIEYYQSKDS 567 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 + + D LF+ L G I+ + G E+R+++ Sbjct: 568 EYTVAKKETVDKYFLFIERALILLNPTGLLGY---IIPHKFFITKGG-----KELRKFIA 619 Query: 383 ENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGK 421 E I I+ T +F T + I+ K + + K Sbjct: 620 EKHQISKIINFGVTQVFPGRATYTAILIIQANKMAQFKYK 659 >gi|300858888|ref|YP_003783871.1| hypothetical protein cpfrc_01471 [Corynebacterium pseudotuberculosis FRC41] gi|300686342|gb|ADK29264.1| hypothetical protein cpfrc_01471 [Corynebacterium pseudotuberculosis FRC41] gi|302206588|gb|ADL10930.1| Hypothetical protein CpC231_1463 [Corynebacterium pseudotuberculosis C231] gi|308276831|gb|ADO26730.1| Hypothetical protein CpI19_1470 [Corynebacterium pseudotuberculosis I19] Length = 62 Score = 66.9 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 17/57 (29%) Query: 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64 A L + +W+ A L G D+ + P + + E + Sbjct: 5 QAKLESKLWEAANSLRGAMDAADYKNYVFPVFFWKWISDNWELGHTKFLADVERARP 61 >gi|332798525|ref|YP_004460024.1| type I restriction-modification system, M subunit [Tepidanaerobacter sp. Re1] gi|332696260|gb|AEE90717.1| type I restriction-modification system, M subunit [Tepidanaerobacter sp. Re1] Length = 127 Score = 66.5 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 25/131 (19%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + +W++ ++L G + + +L ++ + Sbjct: 11 NGNKKSDLYSKLWQSCDELRGGMDASQYKDCVLVRLFVKYVTD----------------K 54 Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFDF 120 V G SF+ + L ++ + + I ++ + I DF Sbjct: 55 YYGKPDSLLVVPDGGSFH-----DMVKLKGNSEIGDGMNKIIHRLAEENDLVGIITVADF 109 Query: 121 SSTIARLEKAG 131 + +L K Sbjct: 110 NDD-DKLGKGK 119 >gi|153870433|ref|ZP_01999836.1| adenine specific DNA methyltransferase [Beggiatoa sp. PS] gi|152073099|gb|EDN70162.1| adenine specific DNA methyltransferase [Beggiatoa sp. PS] Length = 1026 Score = 66.5 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 86/316 (27%), Gaps = 48/316 (15%) Query: 112 KAIFEDFDF----------SSTIARLEKA--------GLLYKICKNFSGIELHPDTVP-- 151 + IF DF + I +L L K + D Sbjct: 225 RRIFNHPDFAKRNVIAREIENVIDKLTAKSFNRDAFFDELKYFYKALEDVAATIDEYSYK 284 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLY 210 ++ +YE + F +V++ TP+ +V + D K + Sbjct: 285 QYFLNTVYERFFQGFSVQVADTHGIVYTPQSIVDFMVKSVNEILDQEFGKSLASKGVHIL 344 Query: 211 DPTCGTGGFLTDAMNHVADCGS-HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 DP GTG F+ M +A + H E+ + + + L+ Sbjct: 345 DPFVGTGNFIVRIMREIATQSRMALRHKYKNELHCNEVMLLPYYIASMNIEHEFLDLMGN 404 Query: 270 RDLSKNIQQGSTL-----------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + I T F + NPP+ + D Sbjct: 405 YQPYEGICLADTFELAEGIQSEMFAPENTKRVKKQQKTDFFVIIGNPPYNAGQINENDNN 464 Query: 313 EKEHKNGELGRFGPGLPKISDGSML-----FLMHLANKLELPPNGGGRAAIVLSSSPL-- 365 + + GR K S ++L + G A V ++S L Sbjct: 465 KNRNYPVIDGRVRETYSKDSKATLLRKLFDPYVKAIRWASDRIGDEGIVAFVSNNSFLDD 524 Query: 366 --FNGRAGSGESEIRR 379 F+G E + + Sbjct: 525 LSFDGMRKHLEQDFSK 540 >gi|300870186|ref|YP_003785057.1| fused endonuclease-methyltransferase [Brachyspira pilosicoli 95/1000] gi|300687885|gb|ADK30556.1| endonuclease-methyltransferase fusion protein type IIG, BpmI [Brachyspira pilosicoli 95/1000] Length = 906 Score = 66.5 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 68/460 (14%), Positives = 130/460 (28%), Gaps = 115/460 (25%) Query: 82 NTSEYSLSTLGS--TNTRNNLESY----IASFSDNAKAIFED---------FDFSSTIAR 126 N Y L L + ++ ++Y S+ +N IF+ FD + + Sbjct: 159 NVENYGLLALANPKNKNEDDFKNYGFNGENSYYENLNYIFDRANEKYNSGLFDEDAIVRN 218 Query: 127 LE-KAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRR-------------FGSEV 170 L + I +P ++ N YE + + EV Sbjct: 219 LNIDDKTIKDIIDELYTPKNPYQFSVIPVEIIGNAYEQFLGKTISIDKNHKAVIELKPEV 278 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + + TP +V A + + + DP CG+G FL A ++ + Sbjct: 279 RKAGGVYYTPEYIVDYIVANTVGEAIKGKTPDEIVNIKILDPACGSGSFLLGAYKYLLNY 338 Query: 231 GSH----------------------------HKIPPILVPHGQELEPETHAVCVAGMLIR 262 K I G +++ V +L++ Sbjct: 339 HKEYFLKNKTKKYMGSRYEIIDESGNLALWVRKQILINNIFGVDIDSNAVEVAKLSLLLK 398 Query: 263 RLESDPRRDL---------------SKNIQQGSTL------------------------- 282 E + NI+ G++L Sbjct: 399 SFEDSFNVNEYGQGSLLNEKILPSLDNNIKCGNSLIGNDFYESHLDLDDATLYKINCFDW 458 Query: 283 ---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 +D+ F + NPP+ + +EKE K G D LF Sbjct: 459 NSKFRDIMKTGGFDVVIGNPPYVQ-----IQGMEKELKEGYKEANYKNYISTGDIYQLFF 513 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + L+ GG ++ S+ + +A G + R + N + ++ L F Sbjct: 514 EKGLDVLK----IGGIVGMITSNKWM---QANYG-AVTRDYFYRNANVNGVIDLGGGRFK 565 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 + T + + S + E + + A + + Sbjct: 566 GATVDTSIILYSKKDDEIKINEPIEFKAVKFYDDLSELNN 605 >gi|319951791|ref|YP_004163058.1| n-6 DNA methylase [Cellulophaga algicola DSM 14237] gi|319420451|gb|ADV47560.1| N-6 DNA methylase [Cellulophaga algicola DSM 14237] Length = 1066 Score = 66.5 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 65/494 (13%), Positives = 143/494 (28%), Gaps = 118/494 (23%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTN 95 F + E L +++R + + + Y+ + + G Sbjct: 235 FLFIFFAEDRLLLPPNSIRSIVNQWTDLRDKYDEYF-----PLYDRFKKYFGYMNTGHKG 289 Query: 96 TRNNLESYIAS-FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 ++++ +Y F+ + + + + LLYK S + + + V Sbjct: 290 MQHDIFAYNGGLFTPD--EVLDKIKIND--------DLLYKHTVKLSNYDFESEVSVN-V 338 Query: 155 MSNIYEHLIRRFGSEVS--------------EGAEDFMTPRDVVHLATA----LLLDPDD 196 + +I+EH + + + F TP+ + +L + Sbjct: 339 LGHIFEHSLTEIEEIQNELEGIPHDGGKTKRKKEGVFYTPKYITKYIVDKTVGMLCEEKK 398 Query: 197 ALFKESPGMIR----------------------------TLYDPTCGTGGFLTDAMNHVA 228 T+ DP CG+G FL A+ + Sbjct: 399 FELDIQESEYEKERKGRQKSTLKKLTKKLEDYRKWLLQLTICDPACGSGAFLNQALEFLI 458 Query: 229 DCGSHHKIPP------------------ILVPHGQELEPETHAVCVAGMLIRRLE-SDPR 269 + +G ++ E + + + E Sbjct: 459 TEHQYIDELQAKLFGDALVLSDIENVILENNIYGVDINEEAIEIAKLALWLHTAEKGRKL 518 Query: 270 RDLSKNIQQGSTLSKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAV 312 L+ NI+ G++L D F F + NPP+ + + Sbjct: 519 TSLNNNIKCGNSLIDDPNVAGHKAFNWQQEFPEVFARGGFDVVIGNPPYVQHRKIF---- 574 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 E N + SD S+ F N L+ G ++++ FN G Sbjct: 575 --EFSNFFKSAYKVYT-GTSDLSVYFFEKAFNILKKNSVLG-----YINTNKFFNTEYG- 625 Query: 373 GESEIRRWLLENDLIEAIVAL-PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431 E+R +L +++ I I+ + +F +++ + I + + ++ + Sbjct: 626 --KELRDFLTKHN-IHNIINFEQSAIFKDALVSSVILIATKEEPNNETNYIEFHKESINA 682 Query: 432 TSIRNEGKKRRIIN 445 + E + R Sbjct: 683 EKFQRELENRNRTI 696 >gi|258616829|ref|ZP_05714599.1| Type I restriction-modification system methylation subunit [Enterococcus faecium DO] Length = 79 Score = 66.5 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64 A L ++ A++L +++ +L + L L E+Y Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62 Query: 65 SNIDLESFVKVAG 77 + + Sbjct: 63 QTMLYRELLSDEE 75 >gi|169830944|ref|YP_001716926.1| hypothetical protein Daud_0772 [Candidatus Desulforudis audaxviator MP104C] gi|169637788|gb|ACA59294.1| hypothetical protein Daud_0772 [Candidatus Desulforudis audaxviator MP104C] Length = 44 Score = 66.5 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRR 43 M F FIW A+ L G ++ + V+LP T+LRR Sbjct: 1 MNNFGEK----VAFIWSVADLLRGPYRPNQYKDVLLPMTVLRR 39 >gi|219668644|ref|YP_002459079.1| N-6 DNA methylase [Desulfitobacterium hafniense DCB-2] gi|219538904|gb|ACL20643.1| N-6 DNA methylase [Desulfitobacterium hafniense DCB-2] Length = 673 Score = 66.5 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 65/436 (14%), Positives = 126/436 (28%), Gaps = 58/436 (13%) Query: 106 SFSDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 S+S + E+ D I L+ A L ++ +Y L Sbjct: 152 SYSMLIDDLLENVSDLEGQILHLKTALSL-----------PMDYIEEQDLLGLLYMSL-- 198 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TP VV + L DP CGTG FL Sbjct: 199 -QNAGERKSRGVYYTPLAVVK--------DSVDHLEPFLHEKIRLLDPCCGTGNFLMHVY 249 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 ++ + +G ++ P + ++ M + ++D L KN L++ Sbjct: 250 KYIKNLDG---------IYGYDISPLSVSLTRINMALIS-KTDNLEVLYKNFLCKDPLAR 299 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + NPP+G ++ + K + F + Sbjct: 300 --KSNLEFDVIIGNPPWGFNYDAEARQALK----------KAYVSARKKTVESFAVFTEY 347 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ + GG + VL S L +R +L+++ I+ + D F Sbjct: 348 ALKTAID-GGIVSFVLPQSLLN----VKIHQPLRDYLVDHAKIKR-IRYWDDAFDGVQCP 401 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWT----SIRNEGKKRRIINDDQRRQILDIYVSRE 460 L + ++++ + + + + DD+ I I Sbjct: 402 AMALTLQKKHQGFEIKGIEVVTNSRTFRINIDRELDLSNWNFDLTDDEISLIKRI---ES 458 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 GK + D+ F + +S I ++ Q+F K Sbjct: 459 PGKVVYLKDHADFALGIVTGDNKRFLSNIQSDDREVIYRGSDVYKYRCLPGQNFIRFEPK 518 Query: 521 PMMQQIYPYGWAESFV 536 Q + Sbjct: 519 SFQQIAPIDLYRAKEK 534 >gi|268680121|ref|YP_003304552.1| hypothetical protein Sdel_1501 [Sulfurospirillum deleyianum DSM 6946] gi|268618152|gb|ACZ12517.1| protein of unknown function DUF450 [Sulfurospirillum deleyianum DSM 6946] Length = 974 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 59/435 (13%), Positives = 130/435 (29%), Gaps = 80/435 (18%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 + E + ++E F + Y Y+ ++ + + N + Sbjct: 233 IFILFAEDRALLRHNTIKEIREEFANQ--------RFTDYKLYDIFKFYFDGINTGNAKL 284 Query: 99 NLESYIAS------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N+ Y F D+ K +D + +L + I N G Sbjct: 285 NIPKYNGGLFATDEFLDSLK--IDDVCLDANAQKLSNYDFVSDISVNILGHIFEQSLSDL 342 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM------- 205 ++ L + + F TP + L KE+ + Sbjct: 343 EELNASINDLAFDKKNSKRKKDGVFYTPEYITRYIVENTLGKLCEEQKEALHVKSVEAPK 402 Query: 206 ------------------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---- 237 + DP CG+G FL A+ ++ + Sbjct: 403 NSKKPTKEEALTKENLERYKEWLLHVKILDPACGSGAFLNQALEYLIKEHKELQEKLAIM 462 Query: 238 -------------PILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLS 283 +G ++ + + + +R + +LS I+ ++L Sbjct: 463 GDITAYYEIEASILENNLYGVDINEDAVEIARLSLWLRTAQKGRALANLSDKIKCANSLL 522 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F F + NPP+ + ++A++ K + +F +D + F Sbjct: 523 EMPFEENSFDVVIGNPPYVR-----QEAIDNIIKEQYMQKFQNVATSTADLYVYFYELSI 577 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTN 402 N L+ G + + + +R++L + I+ +V ++F + Sbjct: 578 NLLKE----NGILGFITPNKWMERKYG----VNLRKYL-KPYAIQKLVNFGELNIFEDAS 628 Query: 403 IATYLWILSNRKTEE 417 + IL N+K++ Sbjct: 629 TEPAIIILENKKSDN 643 >gi|284802098|ref|YP_003413963.1| N-6 DNA methylase [Listeria monocytogenes 08-5578] gi|284995240|ref|YP_003417008.1| N-6 DNA methylase [Listeria monocytogenes 08-5923] gi|284057660|gb|ADB68601.1| N-6 DNA methylase [Listeria monocytogenes 08-5578] gi|284060707|gb|ADB71646.1| N-6 DNA methylase [Listeria monocytogenes 08-5923] Length = 636 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 117/338 (34%), Gaps = 56/338 (16%) Query: 116 EDFDFSSTIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYE------HLIRRFG 167 E+ ++S + RL+ GL Y + +NF+ +++ + S+IYE I + Sbjct: 73 ENTNYSILLERLDVDGLFSWYSMAENFATDNF--ESINVQEFSDIYELVNQHDTFIDK-- 128 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + F TP ++V + +L L DP CGTG FL + + + Sbjct: 129 -NIKKKLGQFYTPTNIVQRMIFEIKTNLRSLTN-----TDLLIDPACGTGVFLIEIIKEL 182 Query: 228 ADCGSHHKI--PPILVPHGQELEPETHAVCVAG---MLIRRLESD---------PRRDLS 273 ++ ++ P +L++ + + Sbjct: 183 KKIFQQSEVIEYVKNNMFAYDVNPFAVIATKINIAYILLKEFPEEKEKILDYIVNDNNAF 242 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 NI+ +T+ + + L NPP+ K ++ + + G P I Sbjct: 243 CNIRWKNTVVEP--DNNIYTIILGNPPYFKLNKELIKNISGYDEIL------YGQPNI-- 292 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSS--SPLFNGRAGSGESEIR-RWLLENDLIEAI 390 F + ++ G + IV S S L+ S ++R R L+ D Sbjct: 293 --YSF--FMYWGMKHLKKDGAMSFIVPQSIRSGLYFKNLRSKMKDLRIRALIHIDS---- 344 Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 ++F R A + L N+ + K+Q + Sbjct: 345 ---RQNVFDRAEQAVLIICLENKPVANSKTKIQFYDGN 379 >gi|124005662|ref|ZP_01690501.1| type I restriction-modification system, M subunit, putative [Microscilla marina ATCC 23134] gi|123988730|gb|EAY28336.1| type I restriction-modification system, M subunit, putative [Microscilla marina ATCC 23134] Length = 1014 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 139/469 (29%), Gaps = 89/469 (18%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLS-TLGSTNT 96 + LE + T +A +KY S + V G Y Y E + + L Sbjct: 194 LFILYLEDR-KATDAAFYQKYTGAQNSQTYFDVLNDVKGTYKLYAKLEDAFNGNLSPITA 252 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I + + I + F R E L K F D +P ++S Sbjct: 253 EETKIVTIQ----HLQEIRKCF----WSERREDGQL-----KLFDWRIFSFDVIPVLLLS 299 Query: 157 NIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 NIYE + + G F TP + +L K+ DPTCG Sbjct: 300 NIYEDFLEKEEGEASKTKKGAFYTPPALAEFILNEVLPY---PTKDDTNYQVKTLDPTCG 356 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHAVCVAGMLIRRL 264 +G FL + +N + D L G E+E E V + + L Sbjct: 357 SGIFLVETLNRLLDRWQVAHPNQSLSFEVICQIVQDNIFGIEIEKEAIKVAAFSLYLAML 416 Query: 265 E--------------------SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 + + N+ + S+LS F F + NPPF + Sbjct: 417 DRLEPKTLWQTARFPYLIYDPDNDADKQGANLFRMSSLSTGAFENIDFDLVVGNPPFSRG 476 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 ++ K + S+ + FL G+ A+V ++ P Sbjct: 477 GLSNE---IKTYLKKYDF--------ASEMVLAFL-----HRATTLCPHGKIALVCAAKP 520 Query: 365 -LFNGRAGSGESEIRRWLLENDLIEAIVAL-----------PTDLFFRTNIATYLWILSN 412 LFN R++L + +E + +LF + S Sbjct: 521 ILFN--HLKPYQNFRQFLFQETYVEKVYNFSVLRNVSKKQGGRNLFASATSPVSVVFYSK 578 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 K + K+ K R+I+ Y+ RE Sbjct: 579 NKPVKMPEKLMYC--------APKTAIKNRMIDGIAIDSTDIKYLPREE 619 >gi|169823771|ref|YP_001691382.1| putative type I restriction-modification system methylation subunit [Finegoldia magna ATCC 29328] gi|167830576|dbj|BAG07492.1| putative type I restriction-modification system methylation subunit [Finegoldia magna ATCC 29328] Length = 570 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 78/206 (37%), Gaps = 25/206 (12%) Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 +I+Q + D + ++ S PP G + V ++ + Sbjct: 179 GHQNRASIRQEDYFNTD-LSTLEYNKVFSMPPMGMLYRDFDKRVNDKNLIELYKKNDFNT 237 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 ++ + + + +A ++ S LF + +IR++L++N IE Sbjct: 238 ----KNEWTDILKIISNTKFE-----KAIFIVHSGILF----KERDEKIRKYLIDNGYIE 284 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 +++ L LF I+T + ++S KV++++A++++ S + I D Sbjct: 285 SVIELAPRLFTGIGISTNILLISKN-----NKKVKMVDASEIYHSDKMV----NKITKDD 335 Query: 449 RRQILDIYVSRENGKFSRMLDYRTFG 474 I D Y + S+ + F Sbjct: 336 VEVIFDAYKN--ESTISKEVSPEEFE 359 >gi|295113790|emb|CBL32427.1| Type I restriction-modification system methyltransferase subunit [Enterococcus sp. 7L76] Length = 254 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 77/258 (29%), Gaps = 64/258 (24%) Query: 134 YKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLAT 188 YK+ + S + ++ F +E S+ TP ++ +A+ Sbjct: 22 YKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVAS 81 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L G R+ D GTGG + P + +E Sbjct: 82 GVL------------GPTRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFS 119 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFT 288 + + IR + + + G +LS+ D Sbjct: 120 DRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVP 171 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + + NPP+ W K+ +E+E + L S FL+ ++L+ Sbjct: 172 ATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE 226 Query: 349 PPNGGGRAAIVLSSSPLF 366 G +I+L F Sbjct: 227 ----NGVMSIILPHGGRF 240 >gi|172036013|ref|YP_001802514.1| putative N-6 DNA methylase [Cyanothece sp. ATCC 51142] gi|171697467|gb|ACB50448.1| putative N-6 DNA methylase [Cyanothece sp. ATCC 51142] Length = 604 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 82/288 (28%), Gaps = 33/288 (11%) Query: 105 ASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + + + + F F+ ++ R L Y + + + ++ + + IYE+ Sbjct: 156 NNIARELQGVINTF-FTGSVRRNTLSSIERYYGVIRR-TAASIYNHHEKQKFLKAIYENF 213 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + + ++ TP ++V + K + DP GTG F+T Sbjct: 214 YKAYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFGKLLCDSGVEILDPATGTGTFVT 273 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + ++ K H E++ + + + + + NI T Sbjct: 274 ELIEYL--PKDKLKYKYQNEIHCNEVQILPYYIANLNIEYTYQQKMNEYEEFNNICFVDT 331 Query: 282 LSKDLF---------------------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 L F ++ + NPP+ K E G Sbjct: 332 LDHTSFTGKQLDLFALTIENTERIKNQNDRQISVIIGNPPYNAKQENFNQNNANRFYEGI 391 Query: 321 LGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSS 363 R K + G A V ++S Sbjct: 392 DKRIKETYIKQGTAQNQIVIYDMYTRFIRWASDRLSKNGIIAFVSNNS 439 >gi|149370586|ref|ZP_01890275.1| type II restriction enzyme, methylase [unidentified eubacterium SCB49] gi|149356137|gb|EDM44694.1| type II restriction enzyme, methylase [unidentified eubacterium SCB49] Length = 1109 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 66/473 (13%), Positives = 131/473 (27%), Gaps = 136/473 (28%) Query: 42 RRLECALEPTR--------SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 R L R + +K+ D + Y + L Sbjct: 263 RYLFIFFAEDRGLLPANSTQQILDKWKDDVDFGDDRPLYTLFKQY---------FNFLDQ 313 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPD 152 + I +++ F T+ L+ + LLYK + + + Sbjct: 314 GRAGTAKRAEIYAYNGGL------FKEDKTLDSLDIDSDLLYKHTSKLAAYDFESQVDVN 367 Query: 153 RVMSNIYEHLIRR----FGSEVS----------EGAEDFMTPRDVVHLATALLLDPDDAL 198 + +I+E+ + + F TP+ + + Sbjct: 368 I-LGHIFENSLNEIESVNAEIEGGDFDKQKSKRKKDGVFYTPKYITKYIVENTIGKLCDE 426 Query: 199 FKESPGMIR--------------------------------TLYDPTCGTGGFLTDAMNH 226 K G T+ DP CG+G FL A++ Sbjct: 427 KKTELGFKEEEYFKGRKNRQKATITKLVNILDTYRDWLLQLTICDPACGSGAFLNQALDF 486 Query: 227 VADCGSHHKIPPI------------------LVPHGQELEPETHAVCVAGMLIRRLES-D 267 + S+ +G +L E+ + + +R + Sbjct: 487 LIKEHSYIDELKTKVLGGGLQFSDIENTILENNIYGVDLNEESVEIAKLSLWLRTAQPRR 546 Query: 268 PRRDLSKNIQQGSTL-------------SKDLFT---------GKRFHYCLSNPPFGKKW 305 +L+ NI+ G++L ++ F G F + NPP+ + Sbjct: 547 KLNNLNSNIKCGNSLIDSKTVAGDKAFNWEEQFPKVFDPSSGSGGGFDVVIGNPPYVRVQ 606 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSS 363 D + V+ +N + + LF + + ++ S Sbjct: 607 NLDSNLVDYYFENYKS--------PKGKLDLSILFFEKVFSLIKTEGKASFI-------S 651 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNR 413 + GE IR L E ++E I+ +LP +F ++ L+N Sbjct: 652 SSQWMQTDYGE-NIRNILSEKKILE-IINFGSLP--VFENVETYPAIFFLTNN 700 >gi|89894238|ref|YP_517725.1| hypothetical protein DSY1492 [Desulfitobacterium hafniense Y51] gi|89333686|dbj|BAE83281.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 519 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 63/431 (14%), Positives = 123/431 (28%), Gaps = 58/431 (13%) Query: 111 AKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + E+ D I L+ A L ++ +Y L + Sbjct: 3 IDDLLENVSDLEGQILHLKTALSL-----------PMDYIEEQDLLGLLYMSL---QNAG 48 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + + TP VV + L DP CGTG FL ++ + Sbjct: 49 ERKSRGVYYTPLAVVK--------DSVDHLEPFLHEKIRLLDPCCGTGNFLMHVYKYIKN 100 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 +G ++ P + ++ M + ++D L KN L++ + Sbjct: 101 LDG---------IYGYDISPLSVSLTRINMALIS-KTDNLEVLYKNFLCKDPLAR--KSN 148 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F + NPP+G ++ + K + F + L+ Sbjct: 149 LEFDVIIGNPPWGFNYDAEARQALK----------KAYVSARKKTVESFAVFTEYALKTA 198 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 + GG + VL S L +R +L+++ I+ + D F Sbjct: 199 ID-GGIVSFVLPQSLLN----VKIHQPLRDYLVDHAKIKR-IRYWDDAFDGVQCPAMALT 252 Query: 410 LSNRKTEERRGKVQLINATDLWT----SIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465 L + ++++ + + + + DD+ I I GK Sbjct: 253 LQKKHQGFEIKGIEVVTNSRTFRINIDRELDLSNWNFDLTDDEISLIKRI---ESPGKVV 309 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 + D+ F + +S I ++ Q+F K Q Sbjct: 310 YLKDHADFALGIVTGDNKRFLSNIQSDDREVIYRGSDVYKYRCLPGQNFIRFEPKSFQQI 369 Query: 526 IYPYGWAESFV 536 + Sbjct: 370 APIDLYRAKEK 380 >gi|329119725|ref|ZP_08248405.1| type II restriction enzyme [Neisseria bacilliformis ATCC BAA-1200] gi|327464174|gb|EGF10479.1| type II restriction enzyme [Neisseria bacilliformis ATCC BAA-1200] Length = 503 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 29/262 (11%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + ++ +TP +V A+ R + +P+CG G FLT+ + Sbjct: 2 DKAKTLGQVLTPHHIVCAILDACGYSGCAVL------GRFVMEPSCGDGAFLTEIVRRYI 55 Query: 229 DCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++ P G E++ + C+A + E+ + I G T Sbjct: 56 AAAKEARMTPEQTAADLSKYIFGIEIDEDMWHKCLARLDKIVSETLGSVRVQWQIMHGDT 115 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L + F + + NPP+ + +F G D +F Sbjct: 116 LHLYANYPQTFDWVIGNPPY---VRVHNLPEDTRRFIKRHFQFAVGTT---DMYPVFFET 169 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFR 400 L+ G+ + +S L+N + R +L + ++ + L +F Sbjct: 170 AFAMLKPD----GKLGFITPNSFLYN----TSYRRFRAFLRQQGSLKTLCDLKAEKVFAG 221 Query: 401 TNIATYLWILSN-RKTEERRGK 421 + T + I+ RK E Sbjct: 222 FSTYTAITIMDFARKNAECFDY 243 >gi|315638302|ref|ZP_07893483.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis JV21] gi|315481649|gb|EFU72272.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis JV21] Length = 1040 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 85/589 (14%), Positives = 180/589 (30%), Gaps = 81/589 (13%) Query: 43 RLECALEPTRSAVRE--KYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRN 98 R + T + +Y DL + + G SF E++ + + N + Sbjct: 199 RFFEFFKRTYESFLAIQRYGFDEFDFCDLIAQSVIYGLFVSFVENKEFAFNEDETQNFIS 258 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L + S+ +FD + + L+ + + + + + Sbjct: 259 YLPKNFKTLSELVYFSLPNFDLPEQVKQVLKNIQKTIALLDKPTMAKFLNLELEQIAI-Y 317 Query: 158 IYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYD 211 +YE I+ + + F TP+ VV + + L L + D Sbjct: 318 LYEDFIKAYDELKGTQKRKEGGVFYTPKSVVKMIVSSLDELLKSKFNKTGFNDKSVKVLD 377 Query: 212 PTCGTGGFLTDAMNHVADC---------------GSHHKIPPILVPHGQELEPETHAVCV 256 GTG FL + + K + +G EL + V Sbjct: 378 FATGTGSFLAFVCEKILEQQHSLSQNESFKQATQNEAIKNKFLEDIYGFELSFVPYIVAR 437 Query: 257 AGML--IRRLESDPRRDLSKNIQQGSTL-----------------------SKDLFTGKR 291 ++ +++ D + I +TL ++D+ K Sbjct: 438 LKLMQILKKKGYDKVNEADFQIYLNNTLDLSNQAHYELKIPLFYLDAEWKKARDVKHDKN 497 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 L NPP+ K + + + K + + + + + F+ KL + Sbjct: 498 LLVILGNPPYNAKSKNKGKEILELLKIYKENLNETNIQPLDNDYIKFIRFSQWKLLEQGS 557 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVAL----------PTDLFFR 400 G ++ +S L G +R L ++ D I I+ L ++F Sbjct: 558 STGLMGFIIPNSFL----DGRIHRNMRESLYKSFDEIY-ILNLHGSSEKDAKNDENVF-D 611 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSR 459 I + + K E +G A+ I +K +++D +R + I + Sbjct: 612 IKIGVCISLFIKYKNEPSKGATIFY-ASTAQKGIFKRAEKYALLDDISQRGLNSIKWEEL 670 Query: 460 ENGKFSRMLDYRTFG------YRRIKVLRPL---RMSFILDKTGLARLEADITWRKLSPL 510 + ++F + + + L R F + +G+ +I + L+ Sbjct: 671 SPNEPYFWFVPKSFESEEYEDFWALAGDKALGDKRAIFGIYSSGIKTERDNIAIQ-LNEK 729 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559 +D + Q + ++ +N +K K +A Sbjct: 730 VMQKIVDDFSNLSQVQLVQKYDLKDTRDWKIANAINVIKNKLGSIEKIA 778 >gi|34541136|ref|NP_905615.1| type I restriction-modification system, M subunit [Porphyromonas gingivalis W83] gi|34397452|gb|AAQ66514.1| type I restriction-modification system, M subunit, putative [Porphyromonas gingivalis W83] Length = 1002 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 60/425 (14%), Positives = 114/425 (26%), Gaps = 94/425 (22%) Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114 E A + + E Y + + T F+ N I Sbjct: 197 YLEDKGAAKEAGLYREIRKDAESY-------FDILD-DVDATYKLFAKLQDHFNGNVFPI 248 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-----------VMSNIYEHLI 163 ED LEK + I P + ++S +YE+ + Sbjct: 249 IEDEQSKVKKEHLEKIKKCF--ID--GDISGQPKLFENWRIFKFDFIQIELLSEVYENFL 304 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + F TP +V L D K + DP CG+G FL ++ Sbjct: 305 GEL--DTKKEKGQFYTPYTLVELI-----LNDKLPIKNETNYNVKILDPACGSGIFLVES 357 Query: 224 MNHVADCGSHHKIPPILVP-----------HG--------------------QELEPETH 252 + + ++ G + L P+ Sbjct: 358 YKRLIRRWKNKNPEKVITFKELNDILVKNIFGIEIDPLAIKVTAFSLYLALVEHLNPKKL 417 Query: 253 AVCVAG----MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEK 307 + ++ + + KN+ T+ + ++ + + NPPFG +K Sbjct: 418 WIDKTNKFPYLIDNPNDISIKEKKGKNLWCRDTIGEVNPDDFEKVNLVIGNPPFGT--KK 475 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 ++ G+ + FL G A++ ++ L N Sbjct: 476 LSKSIMDYCVKYNFGKEMV---------LPFLHKSI-----EFCPDGEIALIFNTKVLTN 521 Query: 368 GRAGSGESEIRRWLLENDLIEAIVAL------PTD----LFFRTNIATYLWILSNRKTEE 417 R WLL + +E + L P + LF + + + Sbjct: 522 --TKKTYQNFRHWLLNENYVEKLYNLSIFRKSPRNFGGQLFTSAIGPICIIYFQAKTPPK 579 Query: 418 RRGKV 422 + Sbjct: 580 ASNTI 584 >gi|291522490|emb|CBK80783.1| Type I restriction-modification system methyltransferase subunit [Coprococcus catus GD/7] Length = 412 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 56/388 (14%), Positives = 111/388 (28%), Gaps = 79/388 (20%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105 R V + N+ + F + + + N L + I+ Sbjct: 5 EIRQNVIALHNDLRTVNMPDQY-----KSLFVSILMLDEVEMLAKNDTEQLMADISYVIA 59 Query: 106 -SFS-DNAKAIFEDFDFSSTIARLEKAGL-----LYKICKNFSGIELHPDTVPDRVMSNI 158 FS + A+ I E F S T++ + + L+ + I+ +S Sbjct: 60 RRFSGEQAERISEKFTKSCTVSLIRERKSCEEYSLWWFLQQLQKIKSQLKETNMDAISLF 119 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 Y + + S +TP + ++ + ++ D CGTG Sbjct: 120 YHVFLS-YSSGGRNSLGIVLTPEHIADFMAKVI----------NVQPGDSILDICCGTGA 168 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 L A ++ + +G E + + + +R ++ Sbjct: 169 LLNAASHY----------NGGGMLYGCERDEGVYDMASISQGVRYENMRLFHSDCYKLRS 218 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 S + L NPP+ K + + + +E Sbjct: 219 ----SNPRLMADKG---LLNPPYAMKDHDELEFLLEEL---------------------- 249 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++ G AAIV S + RR LLE ++A+ ++P D+F Sbjct: 250 --------KMIRPHGLAAAIVPSKTAYVMSEP---YITRRRQLLEEHTLKAVFSMPDDIF 298 Query: 399 FRTNIA--TYLWILSNRKTEERRGKVQL 424 T + + + K Sbjct: 299 NGNGATAVTCIMVFEAHVPHDPSEKTFF 326 >gi|289449477|ref|YP_003475503.1| hypothetical protein HMPREF0868_1226 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184024|gb|ADC90449.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 230 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 19/198 (9%) Query: 10 SLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAVREKYLAF 62 ++ + ++ + L F ++L LR + E +E R + E L Sbjct: 12 NIDSILFNCRDYLRAARNSGSFFEKKDMMLTLVFLRFIGEKYEDGIEALRKTLIEHGLDP 71 Query: 63 GGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI---ASFSDNAKAI 114 NI F A ++ E ST+ +T L++ + + K Sbjct: 72 DDENIRAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSRLEAEDPQLKGC 131 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F F++ L + KI + I ++ +YE+ ++ F ++ Sbjct: 132 FIKGTFTT--RNLAANDI-KKIVDEVNKISHKAFGEEKDLIGYVYEYFLKEFAVNATKEE 188 Query: 175 EDFMTPRD-VVHLATALL 191 +F TP VV L A++ Sbjct: 189 GEFYTPHHDVVKLIAAMI 206 >gi|294789766|ref|ZP_06754996.1| type IIS restriction enzyme M protein [Simonsiella muelleri ATCC 29453] gi|294482272|gb|EFG29969.1| type IIS restriction enzyme M protein [Simonsiella muelleri ATCC 29453] Length = 312 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 66/356 (18%), Positives = 124/356 (34%), Gaps = 63/356 (17%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETH 252 ++D G+GG L MN + + G E+ PE + Sbjct: 5 NKNSYVWDFATGSGGLLVAGMNLMLQDAKTSINSPDELRQKENQIKAEQILGIEVLPEIY 64 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + V M++ D S NI Q ++L+ F K+ Sbjct: 65 MLAVLNMILMG-------DGSSNILQENSLTN----------------FNGKY-----GY 96 Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 KE++N F P + G+ M+F+ N + G A+I++ S G Sbjct: 97 GKENQNFPADVFLLNPPYSAQGNGMIFVEKALNMMHK-----GYASIIIQDSA---GSGK 148 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430 + E R +L+ + A + +P DLF +++ T +++ + E + V+ I+ + Sbjct: 149 AKEFNQR--ILQKHTLLASIKMPNDLFIGKSSVQTAIYVFKIGEPHEAKFPVKFIDFQND 206 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490 N K + N + Y ++D FG +K+ + ++ Sbjct: 207 GYKRSNRKKAKASSNLQNIDHAEERYEE--------LVDLVKFGSGSLKLF--GQNEYVE 256 Query: 491 DKTGLA--RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544 D L + AD + + + L K + + A+ KE KS + Sbjct: 257 DTIALEGDKFGADWNFAQHKKIDAKPTLADFKKTVSDYLAWEVAQLLAKEDDKSGK 312 >gi|323669706|emb|CBJ94829.1| putative membrane protein [Salmonella bongori] Length = 647 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 70/193 (36%), Gaps = 25/193 (12%) Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +R + + + + G+E P + I+ +L + + TP +V Sbjct: 478 SREDANNMSRLLAEVIEGLEFCPTDF----LGQIFMNL-----ELGNTRHGQYFTPYNVC 528 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + + ++L ++ T+ DP CG GG + + + G + ++ + Sbjct: 529 YTMSRMILSDRLSVLTSGERDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYC 586 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 +++P +C + + + + + G++L+ ++ P F Sbjct: 587 VDIDPVAAMMCYIQLSLMGIPAI--------VATGNSLT------VAIKREMATPMFVLG 632 Query: 305 WEKDKDAVEKEHK 317 ++ E+ H+ Sbjct: 633 HWHNRWQAERTHQ 645 >gi|57241972|ref|ZP_00369912.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis RM3195] gi|57017164|gb|EAL53945.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis RM3195] Length = 1034 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 54/362 (14%), Positives = 104/362 (28%), Gaps = 53/362 (14%) Query: 56 REKYLAFGGSNIDLESFVKVAGY--------SFYNTSEYSLSTLGSTNTRNNLESYIASF 107 ++ + + + E F + S+ +Y L + N + L S + Sbjct: 204 KDTFKSIEKIELKDEEFCDILAQAVVYGIFVSYIENDDYDLEKIPIENFISFLPSTFRTL 263 Query: 108 SDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S+ F I LE + + + + +YE ++ F Sbjct: 264 SEFVYFSVPSFSLPQDIKYTLENIKKTLALIDKVELCNILNQDLESISI-YLYEDFLKAF 322 Query: 167 ----GSEVSEGAEDFMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYDPTCGTGGFL 220 ++ + F TP+ VV + + L L + D GTG FL Sbjct: 323 DELRATQKRKEGGVFYTPKSVVKMIVSSLDELLKSKFNKTGFNDKSVKVLDFATGTGSFL 382 Query: 221 TDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDL 272 + K + +G EL + V + ++R+ + Sbjct: 383 AAVFEKIISKESEVFKNETIKNKFLKDIYGFELSFVPYIVARLKLGQILRKSGFKDFSEA 442 Query: 273 SKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWEKDK 309 I +TL +KD+ K L NPP+ K + Sbjct: 443 DFQIYLNNTLDLEKNANFDMFMPLVNLNQEWQKAKDVKHDKNLLVILGNPPYNAKSKNKG 502 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG------GRAAIVLSSS 363 + + K + + + D + F+ KL G + ++S Sbjct: 503 KEILELLKIYKENLNETNIQPLDDDYIKFMRFAQWKLLEQGQKNIFEANSGLMGFITNNS 562 Query: 364 PL 365 L Sbjct: 563 FL 564 >gi|300869710|ref|YP_003784581.1| modification methylase BsuBI [Brachyspira pilosicoli 95/1000] gi|300687409|gb|ADK30080.1| modification methylase, BsuBI [Brachyspira pilosicoli 95/1000] Length = 406 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 49/280 (17%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 ++ E + + TP+ + L L+ + DP CG+G FL Sbjct: 14 LKNTNIEKRKKLGQYFTPKSIRDLLLKELI------NISEKKDNVKILDPACGSGEFLLS 67 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + HG +++ ++ + + +I+ TL Sbjct: 68 CREYFK----------NAHMHGFDIDESLVSISK------------KLINNADIKCLDTL 105 Query: 283 SKDLFTGKRFHYCLSNPP-FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 D ++ Y + NPP F K +K++ + K+ NG + F LF+ Sbjct: 106 KFDTDKSIKYDYIIGNPPYFEFKLDKEQKSRFKDIINGRVNIFS-----------LFIKI 154 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFR 400 L G A V+ S G+ S++R +++ N IE + + +D F+ Sbjct: 155 GLELLNDD----GYLAYVVPPSM----NNGAFFSKLREYIINNSSIEYLHIVDGSDNFYM 206 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 N L IL ++ + + N ++T + K Sbjct: 207 ANQKVMLLILKKTNNKKNKKYIFSKNDITIFTEDKLFLNK 246 >gi|329123455|ref|ZP_08252019.1| type IIS restriction enzyme M protein [Haemophilus aegyptius ATCC 11116] gi|327471037|gb|EGF16492.1| type IIS restriction enzyme M protein [Haemophilus aegyptius ATCC 11116] Length = 686 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 104/323 (32%), Gaps = 72/323 (22%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + G + + +TP V L L D+ ++D G Sbjct: 345 GKLFNEMYSWLGFSQDKLNDVVLTPSYVATLLAKLARVNKDS----------YVWDFATG 394 Query: 216 TGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L AMN + + G E+ + + + M++ Sbjct: 395 SAGLLVAAMNEMLIDAKNSITSRDELRQKEAHIKAHQLLGVEILSSVYMLAILNMILMG- 453 Query: 265 ESDPRRDLSKNIQQGSTLSK---DLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNG 319 D S N+ ++LS F K F + NPP+ K+ Sbjct: 454 ------DGSSNVLNKNSLSDFEGKGFEDKAFPADAFILNPPYSKEGNG------------ 495 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 M+F+ N + G AA+++ S G + E R Sbjct: 496 ----------------MIFVEKALNMMNK-----GYAAVIIQDSA---GTGKAKEINQR- 530 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 +L+ + A + +P D+F +++ T +++ + E + V+ I+ T+ + Sbjct: 531 -ILQKHSLIASIKMPADIFIGKSSVQTAIYVFKVGEKHEEKQLVKFIDFTNDGYKRSSRK 589 Query: 439 KKRRIINDDQRRQILDIYVSREN 461 K + N + Y + Sbjct: 590 KAKASTNLRNVDHATERYQELVD 612 >gi|319408697|emb|CBI82352.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 1661 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 63/526 (11%), Positives = 140/526 (26%), Gaps = 80/526 (15%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + + LEK Y K + P ++ +Y+ R E Sbjct: 819 DVLNEANLEKESKDLEK---FYDSVKTRASGITDPQAKQSLIL-ELYDKFFRYAFPRTVE 874 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP +VV + + F ++ G + DP GTG F+T + Sbjct: 875 KLGIVYTPVEVVDFIINSVNEVLQTEFGQTLGSPDVHIVDPFTGTGTFITRLLQSGLIKQ 934 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAG--------------------------MLIRRLE 265 + H E+ + + + + E Sbjct: 935 EEMEHKFRHEIHANEIVLLAYYIAAINIETTYHGIMGGDYVPFKKICLTDTFQLYEHKHE 994 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + +DL ++ + ++ + + NPP+ + + D + + R Sbjct: 995 QEQGKDLFSDLMKDNSTRRSHQQNLNIRVIVGNPPYSVGQKSENDNAKNISYSKLDRRIH 1054 Query: 326 PGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES----- 375 S G+++ ++ G + ++ + Sbjct: 1055 ETYIAQSKGNLIRSLYDSYIRAIRWASDRIKDCGVIGFITNAGFINTRSMDGLRKCLNEE 1114 Query: 376 -----------EIRRWLLENDLIEAIVALPTDLFFRTNIAT--YLWILSNRKTEERRGKV 422 +IR+ +L ++F + T + IL ++RGK+ Sbjct: 1115 FSNIYVLNLRGDIRKNMLSKGR----AQEGQNVF-GSGSMTGIAISILIKNPAAQQRGKI 1169 Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQ------IL-DIYVSRENGKFSRMLDYRTFGY 475 + + T + +R+ + ++ I D + N + S + G Sbjct: 1170 YYYDIGNNLTRKEKLSELQRLGSVGGIKREHGWQVITQDEHGDWLNKRNSDFEKFLALGN 1229 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 ++ L + + + L M + + +E Sbjct: 1230 KK------------DTDLKLFETFSCGIVTNRDAWAYNSSYEALARNMSNMIAFYNSEVE 1277 Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW 581 + + + A SFI RA G Sbjct: 1278 RFNAAYLHFDHKARANALNSFINTDARKISWS--RAIKQQLAKGNI 1321 >gi|295093442|emb|CBK82533.1| Type I restriction-modification system methyltransferase subunit [Coprococcus sp. ART55/1] Length = 710 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 58/340 (17%), Positives = 113/340 (33%), Gaps = 59/340 (17%) Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + V+ +Y IR + + A + TP VV + + + E + L+D Sbjct: 185 EDVLGLLYMS-IRD--AGSRKAAGSYYTPTKVVRTLISDVTGDMGSRISEG---GKRLFD 238 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CGTG FL + + + +++ + + + + RL + Sbjct: 239 PCCGTGNFLIQLPDDIELNN----------IYACDIDELSVQLARFNLALGRLSGRRHVN 288 Query: 272 LSKNIQ----------QGSTLSKDL---------FTGKRFHYCLSNPPFGKKWEKDKDAV 312 + + I+ S D + + NPP+G ++++ + Sbjct: 289 VDEAIRTIYEHIERRDFISEYRNDSECGGDDKKLLADPGYDIIIGNPPWGYTFDRETRTL 348 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ GR G+ + SD +F+ L G A VL + L Sbjct: 349 LRKAYRTAAGR---GV-ESSD---VFVECALKLLTDE----GVLAFVLPEALL----DVH 393 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLW 431 IR + E+ + + L D F+ + + L +G V + + Sbjct: 394 NHKTIREIIAESANVSRVSFL-GDAFYGVQCPSLVLQLEKSSDPGHSKGAVIERDGREFV 452 Query: 432 T-SIRNEGKKRR--IINDDQRRQILDIYVSRENGKFSRML 468 + R G + + DD+ R + I EN L Sbjct: 453 VGTDRPLGSENFMLRLTDDEYRLLCRI----ENTDNCEFL 488 >gi|301598299|ref|ZP_07243307.1| putative restriction-modification protein [Acinetobacter baumannii AB059] Length = 212 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 17/106 (16%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 ++ + + +E+ +++ + + ++ TPR + L+ +P Sbjct: 117 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 165 Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQEL 247 +YDP CGTGGFLT+A +H+ D S G+E+ Sbjct: 166 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREI 211 >gi|39939105|ref|NP_950871.1| type I restriction-modification system methyltransferase subunit [Onion yellows phytoplasma OY-M] gi|39722214|dbj|BAD04704.1| type I restriction-modification system methyltransferase subunit [Onion yellows phytoplasma OY-M] Length = 122 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 38/155 (24%) Query: 155 MSNIYEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 M IY +LI F S+ + + +F TP V L + ++ K I +YD Sbjct: 1 MGEIYMYLIETFVSDNITKKQKSGEFFTPPSVSELLSQIICH------KTKNKNITKIYD 54 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L +NH+ GQ+ + + Sbjct: 55 PFCGSGSLLLKIINHI---------NNNKDFSGQKYK------------------NDIPY 87 Query: 272 LSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKK 304 + I+ G TL ++++ ++NPPFG Sbjct: 88 YNLKIENGDTLLFPHQSHLEQKYNIIIANPPFGTP 122 >gi|313664975|ref|YP_004046846.1| hypothetical protein MSB_A0087 [Mycoplasma leachii PG50] gi|312949593|gb|ADR24189.1| hypothetical protein MSB_A0087 [Mycoplasma leachii PG50] Length = 142 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 11/128 (8%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63 + L + IW++A L + + ++ IL L + L ++ + Sbjct: 3 NKITKQKLGSIIWESANKLRKNLEAHEYKDYILGMLLYKFLC----EKQTNWLLSNGIWK 58 Query: 64 GSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNTRNN--LESYIASFSDNAKAIFED 117 L++ + + F N + + + + N Y FS K + Sbjct: 59 SDLQYLDNKFDFSNFEFDNNTTLDSVEEIQEIKQSCIDANGYFIEYRNLFSSWIKN-KNN 117 Query: 118 FDFSSTIA 125 F+ + Sbjct: 118 FNIQNFQE 125 >gi|261415108|ref|YP_003248791.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371564|gb|ACX74309.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325786|gb|ADL24987.1| putative type IIG restriction endonuclease and DNA modification methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 894 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 62/406 (15%), Positives = 122/406 (30%), Gaps = 110/406 (27%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 V + E+ + F N Y N + L + K Sbjct: 265 KVEDFLRMKNLPEEKREAIMHELSNVFKNEDLY-----KPKNGESKLRKV---YVIVHKD 316 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I +S + ++ G L+ + ++ + PD + V+ Sbjct: 317 ILP--YLTSDLPNIDFTGRLFNVLNDWVDV---PDGAENDVV------------------ 353 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ 227 +TPR V L L M ++D G+ GFL AM+ + Sbjct: 354 ----LTPRYVTELMAKL----------TEVNMNSYVWDYATGSAGFLISAMHLMIADAKN 399 Query: 228 -----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + G E PE + + V M++ D S NI G + Sbjct: 400 KIKSPEELRKTIAKIKAEKLLGIEKLPEIYILAVLNMILMG-------DGSSNIINGDST 452 Query: 283 SKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 D + L NPP+ + Sbjct: 453 QFDGKYKQGKMKDKEFPANVFLLNPPYSAPGKG--------------------------- 485 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + F+ +K++ G+AA+++ + G + +L + + A + + Sbjct: 486 -LNFVEKALSKMKS-----GKAAVLIQENAGSTQGDGYT-----KKILNKNTLIASIHMS 534 Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 TDLF +++ T +++ + V+ I+ ++ + +N K Sbjct: 535 TDLFIGKSSVQTAIYVFDVGIPHDTEKLVKFIDFSNDGYARQNRKK 580 >gi|254192710|ref|ZP_04899146.1| N-6 DNA Methylase family [Burkholderia pseudomallei S13] gi|169649465|gb|EDS82158.1| N-6 DNA Methylase family [Burkholderia pseudomallei S13] Length = 872 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 113/390 (28%), Gaps = 70/390 (17%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 +S +YE +R + + TP +V L D K + + DPT Sbjct: 209 TLSAVYEEFLRNEAPDGVKKDGVVYTPSFLVDFVVNRL----DDEMKLNTES--KVLDPT 262 Query: 214 CGTGGFLTDAMNHVADC-----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 G+G FL A + + + G E AV + + Sbjct: 263 AGSGVFLVAAFRRIVERTLASRNLQSLPMEELRSILQNSIFGIEKSSSAAAVTAFSLYLN 322 Query: 263 RLESDPRRDLSKNIQQG------------STLSKD------LFTGKRFHYCLSNPPFGKK 304 LE +L + G + L +D F RF L NPP+ Sbjct: 323 LLEYCSEDELLAAVHHGRRPRVFPALLDKNILVRDFFSSTNHFPSIRFTAALGNPPW--- 379 Query: 305 WEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + + G + R+ DG + L+ GG A+V+ S Sbjct: 380 -----KPINDVSEYAGSIQRYAV------DGDEAAEQIVWQLLQSYLMPGGMLAMVMPSK 428 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALP---TDLFFRTNIATYLWILSNRKTEERRG 420 + A + + + + ++AIV L LF L ++N Sbjct: 429 SFASPSAKTFATSLGQTF----HVKAIVNLSHWRRHLFANAVQPAALLFVANA-PVGHSS 483 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 + R + ++ + + I+ + + Y + Sbjct: 484 RTYFYAPMLWNQPFRPQAMWTLAVDRAEIFPLPSIF-AFAEPE------NTFDAYMLRPL 536 Query: 481 LRPLRMSFI-----LDKTGLARLEADITWR 505 R ++ T LA L D+ + Sbjct: 537 ERAVKARLRHGVQSATSTTLAGLLKDLGLK 566 >gi|262065948|ref|ZP_06025560.1| type II restriction enzyme, methylase [Fusobacterium periodonticum ATCC 33693] gi|291380354|gb|EFE87872.1| type II restriction enzyme, methylase [Fusobacterium periodonticum ATCC 33693] Length = 1011 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 57/431 (13%), Positives = 116/431 (26%), Gaps = 107/431 (24%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED- 176 F + L +++ K S + D + + +I+E I + + Sbjct: 318 FKNDDVLNSLNIDDKVFEELKKISDYDFDSDLNVNI-LGHIFEQSISDIEELKKSISGEE 376 Query: 177 -------------FMTPRDVVHLATALLLDPDDALFKESPGMIR---------------- 207 F TP+ + + ++ G Sbjct: 377 FDQKKSKRKKDGIFYTPQYITKYIVENSIKNWLDDKRKELGEDDLPKLNEKDYIFDIAKK 436 Query: 208 -----------------------TLYDPTCGTGGFLTDAMNHVADCGS------------ 232 + DP CG+G FL A + + Sbjct: 437 NYTKNYRKHIEFWQQYREAVRNIKVIDPACGSGAFLITAFEFLLNYNKYLDDKIFDLVGT 496 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKD 285 K G +L E+ + + ++ + + + NI+ G++L D Sbjct: 497 SDLFSDRTKEILQNNIFGVDLNKESVEITKLSLWLKTADKNKTLASLENNIKCGNSLIDD 556 Query: 286 L-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 F F + NPP+ + + E F Sbjct: 557 PEIAGDLAFNWEKEFPEVFANGGFDIVVGNPPYVL----CQPSNTNEKILKFYNNFEVSS 612 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 KI + F + G + + ++ L N ++R ++L N I+ Sbjct: 613 YKIDLYHLFFEKGII-----LSKNNGYISFITPNTYLVNKYN----LKLREFILRNTQIK 663 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 I+ +F N+ IL K + K+ L + + K++ D Sbjct: 664 EIINYKNIVFEDANVDVSTIILKKSKYTDENVKILL---SSKNENKIVLEKQQNDWLKDD 720 Query: 449 RRQILDIYVSR 459 +I ++ Sbjct: 721 -EKIFNLRKEF 730 >gi|307286626|ref|ZP_07566716.1| conserved domain protein [Enterococcus faecalis TX0109] gi|307288053|ref|ZP_07568071.1| conserved domain protein [Enterococcus faecalis TX0109] gi|306500967|gb|EFM70281.1| conserved domain protein [Enterococcus faecalis TX0109] gi|306502255|gb|EFM71537.1| conserved domain protein [Enterococcus faecalis TX0109] Length = 55 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 16/42 (38%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP 50 A L ++ A++L +++ +L + L L Sbjct: 3 AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLE 44 >gi|20089374|ref|NP_615449.1| hypothetical protein MA0485 [Methanosarcina acetivorans C2A] gi|19914268|gb|AAM03929.1| hypothetical protein MA_0485 [Methanosarcina acetivorans C2A] Length = 125 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + LF H+ L G +AA+ LS + LF G A GE+ IR+ LLE + I+ L Sbjct: 8 AAQLF-QHIHTLLWT----GKQAAVALSGNVLFEGGA--GET-IRKKLLEITDLHTILRL 59 Query: 394 PTDLFFRTNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 PT +F+ ++ T L + + +V + + + + N K+ + Sbjct: 60 PTGIFYANSVKTNLLFFEAKSVAKEPWTKEVWIYD----YHTNVNHTLKKNPMKYSNLEN 115 Query: 452 ILDIY 456 ++ Y Sbjct: 116 FINCY 120 >gi|329766471|ref|ZP_08258015.1| hypothetical protein Nlim_1825 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137070|gb|EGG41362.1| hypothetical protein Nlim_1825 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 733 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 57/416 (13%), Positives = 126/416 (30%), Gaps = 86/416 (20%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74 +W+ + L G +++ +++L ++ ++ T+ + ++ K Sbjct: 143 LWRIFDILRGHIDASEYLEIVLTLFYVK----LIDETKFDNQIFSNLGLEKKSQIDQLSK 198 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134 + N +SL L + E LLY Sbjct: 199 LFTVDESNLDTFSLEKL------------------------------EKLDPNELTNLLY 228 Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 + + FS + +PD + + +F ++ + P V + Sbjct: 229 AV-REFSISQTNPDAWN---------YAVFKFQEQLGFKSNVNSLPESVTGFIYQYITTG 278 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 + + + D +G + D +N + D + Q L + Sbjct: 279 GNTEDLKFRNIAFGFLD----SGKIIFDFLNFITD-DHDFSQKQLEEYAEQNLSIIEPNI 333 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 +++ L + R + +I+ +D+ ++F ++ PPF K ++ Sbjct: 334 TKIK-IVKLLLALSRLKVQSHIEH----PEDIHFERKFDCIVTQPPFNWKIQRATRVERN 388 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 F H K+ GG +L S LF+ A Sbjct: 389 -----------------------FENHELIKMIELVRDGGFLVAILPPSFLFSNDAR--- 422 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR----KTEERRGKVQLIN 426 R + N I I+ LP+ + +I + +L + + KV + + Sbjct: 423 -NTREIISNNCYIRGIIHLPS-ILQTISIRPVMLLLQKKYADDNPIKENYKVFMSD 476 >gi|225551105|ref|ZP_03772051.1| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225378920|gb|EEH01285.1| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 179 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 31/179 (17%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + +L + IWK AE+L G DF + +L R + E + + Sbjct: 3 NKKEIERNNLHSTIWKIAEELRGAIDGWDFKQYVLGILFYRYIS---ENFTKYINDGERE 59 Query: 62 FGGSNIDLESFVK-----------VAGYSFYNTSEYSLST-LGSTNTRNNLESYIASF-- 107 G N + E+ + FY + + + + NL + + Sbjct: 60 SGDPNFNFETLNDNVVNEENRTDLIKEKGFYIKPSFLFTNVVKNAENDENLNETLETIFK 119 Query: 108 -----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD 152 N K +F + D ++ E+ L +I + Sbjct: 120 SIEESSIGYDSEKNLKGLFNNIDVNNNRLGSTTQERNKRLARILIRIKHKIFEFYFEKN 178 >gi|254976352|ref|ZP_05272824.1| putative DNA modification methylase [Clostridium difficile QCD-66c26] gi|255093737|ref|ZP_05323215.1| putative DNA modification methylase [Clostridium difficile CIP 107932] gi|255315489|ref|ZP_05357072.1| putative DNA modification methylase [Clostridium difficile QCD-76w55] gi|255518152|ref|ZP_05385828.1| putative DNA modification methylase [Clostridium difficile QCD-97b34] gi|255651268|ref|ZP_05398170.1| putative DNA modification methylase [Clostridium difficile QCD-37x79] gi|260684332|ref|YP_003215617.1| putative DNA modification methylase [Clostridium difficile CD196] gi|260687991|ref|YP_003219125.1| putative DNA modification methylase [Clostridium difficile R20291] gi|260210495|emb|CBA64984.1| putative DNA modification methylase [Clostridium difficile CD196] gi|260214008|emb|CBE06133.1| putative DNA modification methylase [Clostridium difficile R20291] Length = 577 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 106/303 (34%), Gaps = 43/303 (14%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + ++S YE+ + + + + + TP+ +V L D + P + Sbjct: 6 QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250 D +CG G FL + + + D H+ +G +++ + Sbjct: 59 LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGADIDEK 118 Query: 251 THAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 ++ + + + D+ N+ +L +F Y + NPP+ + +K Sbjct: 119 AISILKDSLTNKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + + + +D F + + L+ GG +++ L Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGVGSVITPRYFL---- 223 Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 ++R ++ N ++ IV L ++F +++ + +KT+E V I Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVFKIKNE 283 Query: 429 DLW 431 D+ Sbjct: 284 DIC 286 >gi|87303435|ref|ZP_01086223.1| type I restriction-modification system specificity subunit [Synechococcus sp. WH 5701] gi|87282083|gb|EAQ74045.1| type I restriction-modification system specificity subunit [Synechococcus sp. WH 5701] Length = 92 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55 +W A+ L + ++ V+L L+ + + E R+ + Sbjct: 47 EAKLWLTADKLRNNMDAAEYKHVVLGLIFLKYIAGSFEEHRAKL 90 >gi|327412865|emb|CAX67872.1| putative membrane protein [Salmonella bongori] Length = 647 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 70/193 (36%), Gaps = 25/193 (12%) Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 +R + + + + G+E P + I+ +L + + TP +V Sbjct: 478 SREDANNMSRLLAEVIEGLEFCPTDF----LGQIFMNL-----ELGNTRHGQYFTPYNVC 528 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + + ++L ++ T+ DP CG GG + + + G + ++ + Sbjct: 529 YTMSRMILSDRLSVLTSGERDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYC 586 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 +++P +C + + + + + G++L+ ++ P F Sbjct: 587 VDIDPVAAMMCYIQLSLMGIPAI--------VAIGNSLT------VAIKREMATPMFVLG 632 Query: 305 WEKDKDAVEKEHK 317 ++ E+ ++ Sbjct: 633 HWHNRWQAERTYQ 645 >gi|291568061|dbj|BAI90333.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 1023 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 67/411 (16%), Positives = 121/411 (29%), Gaps = 65/411 (15%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---- 103 E + EK G +DL + F + L + N+ Sbjct: 156 WEKAAAEFGEKVRGLGEKLVDLIESERQTNPKF-IDAFEGFINLCRQSINPNISDAAVEE 214 Query: 104 --IASFSDN--AKAIFEDFDF----------SSTIARL-----EKAGLLYKICKNF---- 140 I + IF + DF I L +A L + F Sbjct: 215 MLIQHLLTERIFRQIFNNPDFTRRNIIAVEIEKVIETLTSKSFSRAHFLGDV-DYFYRAL 273 Query: 141 --SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDA 197 + + + ++ +YE + F +V++ TP+ +V + Sbjct: 274 EEAAATITEYSEKQHFLNTVYERFFQGFSLKVADTHGIVYTPQSIVDFMVKSVDEILRTE 333 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 K + DP GTG F+ M + HK H E+ + + Sbjct: 334 FNKSLSDKGVHILDPFVGTGNFIMRIMREIRKTALSHKYQQE--LHCNEVMLLPYYIASM 391 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPP 300 + L + + I T S DLFT + + NPP Sbjct: 392 NIEHEYLTATGQYQPFDGICLVDTFSVQESLQLDLFTPENTQRVKQQQSSPIFVVIGNPP 451 Query: 301 FGKKWEKDKDAVEKEH---KNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNG 352 + + + D + + G R K S + + Sbjct: 452 YNAWQQNENDNNKNRKYSQRGGVDKRVAETYAKDSKATLKNSLYDPYVKAFRWAADRIED 511 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402 G A V ++S + +G A G +R+ L ++ D I ++ L ++ T+ Sbjct: 512 EGIVAFVSNNSFI-DGIAFDG---MRQHLAQDFDAIY-VLDLGGNIRKNTS 557 >gi|119511095|ref|ZP_01630214.1| helicase domain protein [Nodularia spumigena CCY9414] gi|119464266|gb|EAW45184.1| helicase domain protein [Nodularia spumigena CCY9414] Length = 1004 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 99/358 (27%), Gaps = 54/358 (15%) Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFY---------NTSEYSLSTLGSTNTRNNLESYIA 105 V + S + A F+ S + + + + + ++ Sbjct: 164 VLDSLRDLIDSQGKNNISFEAARNKFWDICKESINPEISLFDIREMMIQHILTE-DIFLN 222 Query: 106 SFSD-----------NAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPD 152 F++ + + F F+ + R L Y + + + ++ Sbjct: 223 IFNESQFHRENNVARELQGVISTF-FTGNLKRNTLGTIDRYYAVIRR-TAANIYNHQEKQ 280 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211 + + +YE+ + + + ++ TP ++V + K + D Sbjct: 281 KFLKALYENFYKAYNPKAADRLGIVYTPNEIVRFMIESVDFLVHQNFGKLLADKDVEILD 340 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P GTG F+T+ ++++ +K H E+ + + + + + Sbjct: 341 PATGTGTFITELIDYLPQHSLEYKYK--HEIHCNEVAILPYYIANLNIEYTYKQKMGVYE 398 Query: 272 LSKNIQQGSTLSKDLFTGKRFH---------------------YCLSNPPFGKKWEKDKD 310 +NI TL F GK+ + NPP+ K E D Sbjct: 399 EFENICFVDTLDHTSFAGKQMDLFAMSVENTARIKRQNDRSISVIIGNPPYNAKQENFND 458 Query: 311 AVEKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSS 363 K S G A V +SS Sbjct: 459 NNANRTYAAIDKLIKESYVKYSKAQNNIVLYDMYTRFIRWASDRLGKNGIIAFVSNSS 516 >gi|323486037|ref|ZP_08091368.1| hypothetical protein HMPREF9474_03119 [Clostridium symbiosum WAL-14163] gi|323400604|gb|EGA92971.1| hypothetical protein HMPREF9474_03119 [Clostridium symbiosum WAL-14163] Length = 277 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 15/187 (8%) Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 I RL + K+ +E + +Y L + + F TP V Sbjct: 65 IERLGSVEIPAKMLAII--VEALERNPEQDFLGEMYMQL-----NLGNHWKGQFFTPYCV 117 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 + + + + D+ ++ + ++ DP CG G L A N + H +V Sbjct: 118 CKMMSEITCEDVDSHIEKQGYL--SICDPACGAGATLIAAANTMKK--CKHNFQNHVVFV 173 Query: 244 GQELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 Q+++ T +C + + + N G L + G+ Y P F Sbjct: 174 AQDIDRITGMMCYIQLSLLGCAGYVCIANTITNPLTGHVLFPNEKEGQELWYM---PMFQ 230 Query: 303 KKWEKDK 309 + + Sbjct: 231 NQIWTWR 237 >gi|210135639|ref|YP_002302078.1| type IIS R-M system methyltransferase [Helicobacter pylori P12] gi|210133607|gb|ACJ08598.1| type IIS R-M system methyltransferase [Helicobacter pylori P12] Length = 678 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 106/302 (35%), Gaps = 71/302 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + R E + +TP V L L D+ ++D G Sbjct: 344 GKLFNEMYRWLPFTEDESNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L +MN + + G E++P+ H + V M++ Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPKELEEKIIHIKAEQLLGIEVKPDIHILAVLNMILMG- 452 Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I +LS K + + + NPP+ Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNNKEFKANAFVLNPPYSASGNG------------- 493 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M+F+ K++ G A++++ SS G + E +R Sbjct: 494 ---------------MVFVEQALAKMQS-----GYASVIIQSS---TGSGNAKEYNVR-- 528 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE + A + +P+DLF +++ T++++ + + + +V+ IN ++ + N K Sbjct: 529 ILEKHTLLASIKMPSDLFIGKSSVRTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588 Query: 440 KR 441 + Sbjct: 589 AK 590 >gi|331703624|ref|YP_004400311.1| hypothetical protein MLC_6050 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802179|emb|CBW54333.1| Conserved hypothetical protein, putative TYPEII DNA modification enzyme (Methyltransferase) [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 676 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 66/414 (15%), Positives = 136/414 (32%), Gaps = 81/414 (19%) Query: 97 RNNLESYIASFS-------DNAKAIFEDFDFSSTIARLEKAG----LLYKICKNFSGI-- 143 + L + I +F D A I + RL K L ++ Sbjct: 264 GDILINKINAFLKKKKIPVDKADMIVRKMKNTLLKERLNKPKNGETQLKRVFSKIVDCLG 323 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 E + + ++ + G + + +TP V L L ++ Sbjct: 324 EYYQIGLNTDFTGKLFNEMYSWLGYTDDKWNDVVLTPSYVGTLLVKLAKVNMNSF----- 378 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETH 252 ++D G+ G L AMN + + P G E+ + + Sbjct: 379 -----VWDFATGSAGLLVAAMNEMINDAKRKLKSPSAIEEKILHIKANQLLGIEILEDIY 433 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 + + M++ D S NI +L++ F +E DK Sbjct: 434 MLAILNMILMG-------DGSSNILCKDSLTE----------------FNGNYEFDKS-- 468 Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 ++ F P G+ M+F+ + + S + AG Sbjct: 469 ---YEKFPADAFVLNPPYSKQGNGMVFVERAFSMMTHGY-----------GSIIIQSSAG 514 Query: 372 SGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 +G++ E + +LE + + A + +P D+F +++ T++++ + KV+ I+ ++ Sbjct: 515 NGKATEYNKKILERNTLLASIKMPADIFGGKSSVQTHIYVFKIGEPHNNDNKVKFIDFSN 574 Query: 430 LWTSIRNEGKKRRIINDDQR-----RQILDIYVSRENGKFSRMLDYRTFGYRRI 478 N K + + D R +I+D+ + E + GY + Sbjct: 575 DGYKRTNRKKAKINLLDIDRANQRYNEIVDLVLYGEEKLNIFTKNEYYEGYIDV 628 >gi|255101928|ref|ZP_05330905.1| putative DNA modification methylase [Clostridium difficile QCD-63q42] gi|255307797|ref|ZP_05351968.1| putative DNA modification methylase [Clostridium difficile ATCC 43255] Length = 577 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 106/303 (34%), Gaps = 43/303 (14%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + ++S YE+ + + + + + TP+ +V L D + P + Sbjct: 6 QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250 D +CG G FL + + + D H+ +G +++ + Sbjct: 59 LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGADIDEK 118 Query: 251 THAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 ++ + + + D+ N+ +L +F Y + NPP+ + +K Sbjct: 119 AISILKDSLTNKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + + + +D F + + L+ GG +++ L Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223 Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 ++R ++ N ++ IV L ++F +++ + +KT+E V I Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVFKIKNE 283 Query: 429 DLW 431 D+ Sbjct: 284 DIC 286 >gi|225352841|ref|ZP_03743864.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156330|gb|EEG69899.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 63 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 G IVL LF G E +IR+ L+EN I+AI+ LP ++FF T I Sbjct: 1 HLRADGIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGLPANIFFGTGIP 53 >gi|126700374|ref|YP_001089271.1| putative DNA modification methylase [Clostridium difficile 630] gi|115251811|emb|CAJ69646.1| putative N6 adenine-specific DNA methyltransferase, N12 class [Clostridium difficile] Length = 577 Score = 64.6 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 106/303 (34%), Gaps = 43/303 (14%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + ++S YE+ + + + + + TP+ +V L D + P + Sbjct: 6 QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250 D +CG G FL + + + D H+ +G +++ + Sbjct: 59 LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGADIDEK 118 Query: 251 THAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 ++ + + + D+ N+ +L +F Y + NPP+ + +K Sbjct: 119 AISILKDSLTNKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + + + +D F + + L+ GG +++ L Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223 Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 ++R ++ N ++ IV L ++F +++ + +KT+E V I Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVFKIKNE 283 Query: 429 DLW 431 D+ Sbjct: 284 DIC 286 >gi|322368519|ref|ZP_08043087.1| hypothetical protein ZOD2009_03522 [Haladaptatus paucihalophilus DX253] gi|320551803|gb|EFW93449.1| hypothetical protein ZOD2009_03522 [Haladaptatus paucihalophilus DX253] Length = 816 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 96/306 (31%), Gaps = 67/306 (21%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + E F S + L+ + + + D++ R + YE + Sbjct: 82 PELRD--ERVRFDSLSE--DANERLHALLDSLA-----YDSLSFRRLGGAYERSLDYVPE 132 Query: 169 EVSEG------------AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 G A + TP +VV A + L + + DP G+ Sbjct: 133 MEDGGIRLTGDATRRVSAGAYYTPNEVVEYAVSRALHGREDA---------RVIDPAMGS 183 Query: 217 GGFLTDAMNHVADCGSHHKIPPIL-----VPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 G FLT A++ +A+ G +++P + + + + Sbjct: 184 GNFLTCAIDRLAESRDEQSERARQFVAENRIFGVDVDPLAVELARS-----AVWFETGVW 238 Query: 272 LSKNIQQGSTLSKD-------LFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELG 322 + G L+ + F G F + NPP+ + ++ +E + G Sbjct: 239 PDDTLVVGDALASNPEWMDVAGFDGDGFDAVVGNPPYVRSRHLPAERKDDLRERYDTVTG 298 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 F +P F+ + GGR + ++ + A G R L Sbjct: 299 SFDLYVP--------FVERM-------AELGGRVSCIVPNKW---TTARYGRPLRNRLLD 340 Query: 383 ENDLIE 388 E+ L+E Sbjct: 341 EHRLVE 346 >gi|185178790|ref|ZP_02964586.1| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024347|ref|ZP_02997019.1| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518700|ref|ZP_02557181.2| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|184209410|gb|EDU06453.1| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018611|gb|EDU56651.1| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997714|gb|EDU66811.1| type I restriction enzyme, truncation [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 179 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 31/179 (17%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61 + +L + IWK AE+L G DF + +L R + E + + Sbjct: 3 NKKEIERNNLHSTIWKIAEELRGAIDGWDFKQYVLGILFYRYIS---ENFTKYINDGERE 59 Query: 62 FGGSNIDLESFVK-----------VAGYSFYNTSEYSLST-LGSTNTRNNLESYIASF-- 107 G N + E+ + FY + + + + NL + + Sbjct: 60 SGDPNFNFETLNDNVVNEENRTDLIKEKGFYIKPSFLFTNVVKNAENDENLNETLETIFK 119 Query: 108 -----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD 152 N K +F D D ++ E+ L +I + Sbjct: 120 SIEESSIGYDSEKNLKGLFNDIDVNNNRLGSTTQERNKRLARILIRIKHKIFEFYFEKN 178 >gi|53802480|ref|YP_112803.1| hypothetical protein MCA0269 [Methylococcus capsulatus str. Bath] gi|53756241|gb|AAU90532.1| conserved domain protein [Methylococcus capsulatus str. Bath] Length = 149 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59 MTE L N + A+ L G DF +L F LR L E + + Y Sbjct: 1 MTE--QEQKQLGNTLRGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGTDY 58 Query: 60 LAFGGSN 66 + Sbjct: 59 PKLAADD 65 >gi|325478319|gb|EGC81435.1| N-6 DNA Methylase [Anaerococcus prevotii ACS-065-V-Col13] Length = 284 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 31/245 (12%) Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLF 287 D + G E E + MLI D + N+ Q S + + Sbjct: 9 DTEEEREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWI 61 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 K + L NPP+ + K K+ + P F+ ++A + Sbjct: 62 KDKNVNIVLMNPPYNATRKFCNPEYVKSWKSSKKE-----DPSKG---FHFVEYIARHI- 112 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406 + A++L S + ++ +L+N ++A+ +L ++F+ + Sbjct: 113 ---PANSKIAVLLPMQAAI--GNSSEVKKYKKKMLDNYTLDAVFSLTNEMFYPGASAIAC 167 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ--------RRQILDIYVS 458 I + ER + I+ +G R D + + LD+Y + Sbjct: 168 CMIFDLSQKHERSDRETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWVSTKDEWLDLYKN 227 Query: 459 RENGK 463 ++ Sbjct: 228 KKEVP 232 >gi|242309003|ref|ZP_04808158.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489] gi|239524427|gb|EEQ64293.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489] Length = 542 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 52/297 (17%), Positives = 97/297 (32%), Gaps = 60/297 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 D+ TP +V L LL ++Y+P CG G +L Sbjct: 109 DYATPMEVNRLVALLL----------DLKNGESVYNPCCGLGSWLFSL------------ 146 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G+++ + + + + + +++ F + Sbjct: 147 KGRNFQYYGEDIHSKLIDIAR-------ILAVFMGFKNVHLEVADIFKDSAFGKLEANKA 199 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 P + + E + F + FL + Sbjct: 200 FCYFPI--EANLNLWGFRDEALEPFIKSFS---------EVPFLAYTLKHFHQK------ 242 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A+ + S L G +R++L++ L+EAI+ P ++F L ILS + Sbjct: 243 -AVFIVRSLLLYKACG---ERLRKYLIKQKLLEAIIEFPRNIFPHQMEDFSLLILSKQ-- 296 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 KV INA +L+ K + D I D+Y S++N + SR++ Y Sbjct: 297 --ENKKVLFINAQNLFVKE----GKYNKLID--IEMICDLYFSKQNTEISRLVAYEN 345 >gi|91204872|ref|YP_537227.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] gi|91068416|gb|ABE04138.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] Length = 507 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 47/258 (18%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI-------ARLEKA-----GLLYK 135 L + + L+ Y K +F + +TI +R +KA + K Sbjct: 241 LKKYNNNEINDVLQHYANVIRPKIKDLFPEGSDKTTIINGTIFVSRDQKAIDGYGTVFKK 300 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + F + + S ++E ++ S + F TP VV + Sbjct: 301 VLEKFRDY-GKLEHIDHDFKSKLFESFLKE--SISKKNWGQFFTPIKVVRAINEMAEGEL 357 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDA-----MNHVADCGSHHKIPPILVPHGQELEPE 250 ++ DP CG G F + N ++ + + + Sbjct: 358 KEN--------MSICDPACGVGKFPLEFVKENLDNFFELKNGKINSKVKIIGFDKGFDKD 409 Query: 251 ---THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------------FH 293 T + A MLI E +D ++ ++ + L D F K + Sbjct: 410 EQKTIILAKANMLIYFCE--LIKDNPEHTKEFAKLFNDSFILKTNSILGTLSEPIEGEYD 467 Query: 294 YCLSNPPFGKKWEKDKDA 311 L+NPP+ + Sbjct: 468 LILTNPPYVTSGSSNLKE 485 >gi|290474498|ref|YP_003467378.1| hypothetical protein XBJ1_1462 [Xenorhabdus bovienii SS-2004] gi|289173811|emb|CBJ80593.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 228 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%) Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 TI + E+A + +I + FS + L P + +++ L + + F TP Sbjct: 55 KTINKYERADV-DRIVQLFSHVVLGLAQEPGDFLGSVFMRL-----ELGDKDLQQFFTPW 108 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + + L L + P TL +P CG G A + + G L Sbjct: 109 SVARMMAQMQLQDAAGLLQTQP--FVTLCEPCCGAGCITLAAAEVLRELGHD--PLCSLW 164 Query: 242 PHGQELEPETHAVCVAGMLIRRL 264 + +++P + + + + Sbjct: 165 VYAIDIDPLAAVMAYIQLSLTGI 187 >gi|167465360|ref|ZP_02330449.1| putative methylase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 388 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 72/247 (29%), Gaps = 51/247 (20%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 F TP V ++ E + +P+ G+G FL H+ Sbjct: 33 GFNGGAFFTPTHVARFMAGVI-----RNLYEGFPENMRVLEPSVGSGVFL----EHL--- 80 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 PP EL+ + V ++ G+ L D Sbjct: 81 ------PPDAEITALELDETSARVTQ------------LIYPRADVILGNALDHDR--RD 120 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + NPP+G+ E +K+ + G F+ Sbjct: 121 YYDLVIGNPPYGETVETEKEYATLSKRKGIY---------RGKSEAAFIELAIKAARP-- 169 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TNIATYLW 408 GG A +L F A ++R+ + E A + LP + F T I T + Sbjct: 170 --GGYIAFILPMGISFASHA----KKVRKLMYETCWQVATIMLPGETFMHTRTTIPTQII 223 Query: 409 ILSNRKT 415 IL Sbjct: 224 ILRKAPP 230 >gi|313667119|gb|ADR73009.1| M.BsgI [Lysinibacillus sphaericus] Length = 569 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 120/368 (32%), Gaps = 65/368 (17%) Query: 55 VREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + +KY + ++ + + G + +N + + + N + I + Sbjct: 1 MLKKYTEYPSFEVNFSNAFSHEEIGKNAFNKYKNYIENIKPRNIYTSKLDIIERYKLENF 60 Query: 113 AI---FEDFDFSSTIARLEKAGLLYKICKN-----------FSGIELHPDTVPDRVMSNI 158 I + I+RL+ + +I + F I++ + + + + Sbjct: 61 LINITLSYLELKYRISRLDIISNIKEIIEYYPFQMHSEYYGFIDIDVKENKDFKKWLKDS 120 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 E F ++ TP ++ L + + DP CG+G Sbjct: 121 LEDF---FKEVDQREYGEYYTPEKLIRL----------SFQNLEMDTNNKVVDPACGSGF 167 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-------ESDPRRD 271 F+ + + + + +G ++ P + + L+ + Sbjct: 168 FILEYLEELQNRKLLDIDTIKNNIYGFDIFPFSIIMSK---LLIGEFFVKSKKSFSGKEF 224 Query: 272 LSKNIQQGSTLS-------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 +NI +T+S + T F + NPPF + DK+ + G Sbjct: 225 YFENIILHNTVSSLQCKNNDNRITNLEFDLIIGNPPFFRIEPDDKNGICDCVSYGH---- 280 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + +F+ L+ G++ + L S L +G ++R+ ++E Sbjct: 281 -------NYIQSIFVHWAIQHLKT----NGKSVLFLPQSML----SGFYYQKLRQEIMEK 325 Query: 385 DLIEAIVA 392 +E I++ Sbjct: 326 CRLELIIS 333 >gi|229826486|ref|ZP_04452555.1| hypothetical protein GCWU000182_01859 [Abiotrophia defectiva ATCC 49176] gi|229789356|gb|EEP25470.1| hypothetical protein GCWU000182_01859 [Abiotrophia defectiva ATCC 49176] Length = 671 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 88/271 (32%), Gaps = 41/271 (15%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + F+ ++ V V+ +Y L + + + TP V D Sbjct: 174 ELFNVNYVYEKDVD--VIGLLYISLK---NTGERKSQGCYYTPSKVAKKIC-------DN 221 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 L + + DP CGTG F+ + +G +++ + + Sbjct: 222 LIIFGKTENKKILDPCCGTGNFILQIPD----------CFDYKNVYGNDIDSLSVKLARI 271 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 +R D + +I + L ++F Y L NPP+G K+ ++ Sbjct: 272 NYALRYKVGDKELIYN-HITELDYLYFPK--NRKFDYILGNPPWGYKYSHEEKIKLHC-- 326 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 RF + +F+ N L+ G + +L + L + I Sbjct: 327 -----RFNCATSLSIESYDVFIEQALNNLK----INGTLSFILPHAVLN----VKSHTPI 373 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 R+ +LE + I L + F + + Sbjct: 374 RKLILEKCSFDYIEFL-SKTFDNVCCPSIIL 403 >gi|240949148|ref|ZP_04753495.1| putative type II DNA modification enzyme (methyltransferase) [Actinobacillus minor NM305] gi|240296451|gb|EER47087.1| putative type II DNA modification enzyme (methyltransferase) [Actinobacillus minor NM305] Length = 680 Score = 64.2 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 66/419 (15%), Positives = 128/419 (30%), Gaps = 109/419 (26%) Query: 60 LAFGGSNIDLESFVKVAGYSFYN-------TSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + + +F+N + + TL +T +N+ S K Sbjct: 257 KSSEEEGNRDGEIIIRKINAFFNEKQLPQDKKDLIIRTLSNTLLTDNINKPQNGESQ-LK 315 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 +F ++ G+ YKI + ++ + G + Sbjct: 316 RVFTKI--------VDDLGIYYKI------------GLTTDFTGKLFNEMYSWLGFTQDK 355 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----- 227 + +TP V L L D+ ++D G+ G L AMN + Sbjct: 356 LNDVVLTPSYVATLLVKLARVNKDS----------YVWDFATGSAGLLVAAMNEMLKDAK 405 Query: 228 ------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + G EL + + + M++ D S NI ++ Sbjct: 406 EAIHSPEELRQKEAHIKAKQLLGLELLSSVYMLAILNMIMMG-------DGSSNIINKNS 458 Query: 282 LSK-----------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 L+ D F F + NPP+ Sbjct: 459 LTDFDGKYGFGNTDDKFPADAF---VLNPPYSA--------------------------- 488 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 + +G M F+ N + G AAI++ +S G + E R +L+ + A Sbjct: 489 VGNG-MNFVETALNMMNK-----GYAAIIIQNSA---GSGKAKEINQR--ILQKHTLIAS 537 Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 + +P DLF +++ T +++ + V+ I+ ++ + N K + D Sbjct: 538 IKMPIDLFIGKSSVQTNIYVFKVGEKHHADEMVKFIDFSNDGYTRTNRRKASNNLKDTD 596 >gi|207110324|ref|ZP_03244486.1| type I restriction enzyme M protein [Helicobacter pylori HPKX_438_CA4C1] Length = 113 Score = 63.8 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LF H N L G+ AI++ + F E++I R L++ L+ ++ +P+ Sbjct: 12 LFFQHCLNMLSHK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVICMPSQ 65 Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +F T + +E +V LI+A+ L Sbjct: 66 VFANTGTNVSIIFFQKTPSE---DEVVLIDASKLGEEYT 101 >gi|319902461|ref|YP_004162189.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108] gi|319417492|gb|ADV44603.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108] Length = 610 Score = 63.8 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 88/290 (30%), Gaps = 34/290 (11%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + +S D + N++E I + TP+ + ++ Sbjct: 38 GLLVDYYSDDVPMVDIKSIEDVINVFELAIPK---AEKTKNGAVYTPKYIRDYILERVVA 94 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 ++S D +CG G FL N++ + +G ++ + Sbjct: 95 TQKKTLQDS-----LAIDISCGCGAFLLSLANYLHIHCGQSYHEALQHLYGVDVSELSVK 149 Query: 254 VCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKWE 306 C + + L + D ++ QG++L D F + NPP+ Sbjct: 150 RCKILLSLAALQNGETLADEDFHVSQGNSLDFDFKAMPGVAENGGFDIVVGNPPY----- 204 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGS--MLFLMHLANKLELPPNGGGRAAIVLSSSP 364 + E L R+ + + + FL + L G + +S Sbjct: 205 -VRAKHIDEESKALLSRWQVA--RCGNADLYLPFLEIAYSILCED----GVLGYITLNSF 257 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 + A S R N IE I+ L F T T + ++ Sbjct: 258 FKSMNARLLRSYFRNS---NTAIE-IIDFGHQLVFGKTLAYTCIVLIDKH 303 >gi|259502899|ref|ZP_05745801.1| adenine-specific methyltransferase [Lactobacillus antri DSM 16041] gi|259169150|gb|EEW53645.1| adenine-specific methyltransferase [Lactobacillus antri DSM 16041] Length = 338 Score = 63.8 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 47/342 (13%) Query: 86 YSLSTLGSTNTRNNLES-YIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGI 143 + L G+ ++ L S Y+ + +NA+ + + + E L K+ K + Sbjct: 13 FELFDQGTEILQSALRSSYLDAMLENAENVIDGRVAVEDGVPDKETVAKLEKLYKKMAFK 72 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + +T+ +V+ + ++R+ + + TP + L L+ + Sbjct: 73 DADAETI-RQVLQLSFLKVMRKDAIQANHQM----TPDTIGFLMAFLI-----EKISKLN 122 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 T++DP GTG LT +N + + + +G + +P V A + ++ Sbjct: 123 RPS-TIFDPAVGTGNLLTTVINQLQKASAEP-----IHGYGIDNDPAMLEVASASVALQG 176 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 L D + N L + P + + + ++ H Sbjct: 177 LNVDLFYQDAIN-----ALDIPECDLAVADLPIGYYPLDQNTKNYRTRAQEGHSYVHH-- 229 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 L + N L G + L S LF +W+ Sbjct: 230 -------------LLIEQALNYLRP-----GGFGVFLVPSNLF---QTKEAQPFIQWMHS 268 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQL 424 ++ ++ LP +LF N + +L + ++ KV L Sbjct: 269 VSYLQGLINLPAELFANQNAQKAILLLQRHGGDSKQAAKVLL 310 >gi|260588053|ref|ZP_05853966.1| putative adenine specific DNA methyltransferase [Blautia hansenii DSM 20583] gi|331082378|ref|ZP_08331504.1| hypothetical protein HMPREF0992_00428 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541580|gb|EEX22149.1| putative adenine specific DNA methyltransferase [Blautia hansenii DSM 20583] gi|330400864|gb|EGG80465.1| hypothetical protein HMPREF0992_00428 [Lachnospiraceae bacterium 6_1_63FAA] Length = 721 Score = 63.8 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 100/298 (33%), Gaps = 46/298 (15%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + I E A + + IE + D + IY I + + T Sbjct: 212 IRNLIDDTETAISFCRTHSSIFNIEYVYEPTEDI-LGLIY---ISCKNIGNRKATGSYYT 267 Query: 180 PRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 P VV L + L + DP CGTG FL +H+ P Sbjct: 268 PTKVVKNLISKLDF-----------QATPKILDPCCGTGNFLLQLPDHI----------P 306 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G +++ + + M ++ P + ++I + L++ +T F Y + N Sbjct: 307 FDSVFGNDIDTVSVKITRLNMALK--YDVPVSSICEHITAFNYLTE--YTNTGFRYIIGN 362 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 PP+G ++ + ++ G+ +F+ N L + G A Sbjct: 363 PPWGFEFSVSEKNKLRKLFKATSGKNIESY-------DIFIEQSLNHL----SDNGHLAF 411 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +L + L + IR +L+N I+ I L + F L L ++ Sbjct: 412 ILPEAILN----VKAHTNIREIILKNCSIKNIDFL-GNAFDGVQCPCILLDLQCTRSP 464 >gi|325959874|ref|YP_004291340.1| type ii site-specific deoxyribonuclease [Methanobacterium sp. AL-21] gi|325331306|gb|ADZ10368.1| Type II site-specific deoxyribonuclease [Methanobacterium sp. AL-21] Length = 1021 Score = 63.8 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 64/467 (13%), Positives = 127/467 (27%), Gaps = 120/467 (25%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 LR E +R E + + YN+ + N+ Sbjct: 237 IFLRMGEDRGAEKYGQLRNLLDKPEIYQELCELWKEADQK--YNSGLFHFKDEKGQNSLP 294 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 ++ + + K +D F I L + + ++ N+ Sbjct: 295 DI------LTPHLK--IKDGVFKQIIKNL-----------YYPDSPYEFSVLSPEILGNV 335 Query: 159 YEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 YE + + EV + + TP+ +V + Sbjct: 336 YEQFLGKVIRLTQGHRAKIEEKPEVKKAGGVYYTPQYIVEYIVKNTVGKLCEGKTPQKVS 395 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSH----------------HKIPPILVP------- 242 + DP CG+G FL A N++ + Sbjct: 396 ELRILDPACGSGSFLLGAYNYLLNWHHEYYINLKNKNRLKDQIYKGKNNEWHLTVKEKKR 455 Query: 243 ------HGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGST 281 +G +++ + V +L++ LE + + +L NI+ G++ Sbjct: 456 ILLNNIYGVDIDHQAVEVTKLSLLLKVLEGENKDVIEAQQKLFKERALPNLEDNIKCGNS 515 Query: 282 L-----------------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKD-A 311 L D+F F + NPP+ + + Sbjct: 516 LIGPEIYDDSKFDLKQEDIKRINPFDWKNEFSDVFNNGGFDTVIGNPPYIRIQAMKEWAP 575 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 +E E + S G+ + K N G + +L A Sbjct: 576 IEVEFYKEKYY-------SASKGNYDIYVVFVEKGLELLNEKGLMSYILPHKFF---NAK 625 Query: 372 SGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEE 417 G ++R + + + + +V +F T L LS K ++ Sbjct: 626 YG-QQLRLIISDGENLNKVVHFGDQQVFENATTYTCLLFLSKSKQKK 671 >gi|296131126|ref|YP_003638376.1| putative type II DNA modification enzyme [Cellulomonas flavigena DSM 20109] gi|296022941|gb|ADG76177.1| putative type II DNA modification enzyme [Cellulomonas flavigena DSM 20109] Length = 1322 Score = 63.8 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 61/309 (19%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 + L LG + L IF+D L ++ Sbjct: 347 WQAQRLVLRRLGQDDGCPEL------ALPGLGGIFDDDGTELFTDAELPNDALLSAVRHL 400 Query: 141 SGIEL--------HPDTVPDRVMSNIYEHLIR---------------RFGSEVSEGAEDF 177 S + + + +IYE L+ + + Sbjct: 401 STVRPKGQPLRTVDYKNLGAEELGSIYESLLELVPRYQRTEQTFSLENLAGNDRKTTGSY 460 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGM-----IRTLYDPTCGTGGFLTDAMNHVAD--- 229 TP ++ L L P + P ++ DP CG+G FL A +A+ Sbjct: 461 YTPSSLIDLVLDETLTPLLDEAERKPDPEAALLAMSVCDPACGSGHFLVAAARRIAERLA 520 Query: 230 --CGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKN 275 P +G +L P + + + + P L + Sbjct: 521 IVRSGEIDPTPTHLQDALYDVVGSCIYGVDLNPLAAELAKVSLWLESMRPGRPLSFLDAH 580 Query: 276 IQQGS-------TLSKDLFTGKRFHYCLS-NPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 I+ G+ L D + + PF +K A + +G+ F G Sbjct: 581 IKVGNALLGTTPALLADGIPDDAYVALTGDDKPFTTALKKRNKA--ERESSGDGSLFDLG 638 Query: 328 LPKISDGSM 336 S + Sbjct: 639 DVGTSTIDL 647 >gi|15893273|ref|NP_360987.1| putative type I restriction enzyme M subunit [Rickettsia conorii str. Malish 7] gi|15620494|gb|AAL03888.1| type I restriction enzyme M subunit-like protein [Rickettsia conorii str. Malish 7] Length = 131 Score = 63.8 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%) Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PF + +K + +N F G+ ++G ++H L+ GGR A Sbjct: 1 MPFSQTITKKTSKNGKTITENHITSLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW-ILSNRKT 415 +V+ LF + +R++LL ++ +++LP F T + T + + K Sbjct: 56 LVVPEGFLFRKDT----AAVRQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFIDVHKP 111 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRI 443 ++ + ++N G R Sbjct: 112 NNQKEY--------WFYEVKNIGVTSRQ 131 >gi|52001476|sp|P25239|T257_ECOLX RecName: Full=Type IIS restriction enzyme Eco57I; AltName: Full=Endonuclease Eco57I; Includes: RecName: Full=Adenine-specific methyltransferase activity Eco57IA; Short=M.Eco57IA gi|45157173|emb|CAA43434.3| endonuclease [Escherichia coli] Length = 998 Score = 63.8 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 58/440 (13%), Positives = 118/440 (26%), Gaps = 91/440 (20%) Query: 33 KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 I LR E + Y + + YN+ +SL + Sbjct: 232 NYINSIVFLRVCEDRDLEEYETL---YHFAQDKDFQSLVKKLKSSDKKYNSGLFSLEYID 288 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTV 150 +++ + +I E F + + +L I + F ++ D + Sbjct: 289 ---------ELLSNANSCIWSIIEQLYFPQSTYSFSVFSSDILGNIYEIFLSEKVRIDEL 339 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + EH+ + TP +V + + + Sbjct: 340 GNVKIQPKEEHI----------DRDVVTTPTHIVKEIIRNTVVEYCKGKSDIEILNSKFA 389 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIR 262 D CG+G F+ +A + D + I + + E + +C I Sbjct: 390 DIACGSGAFIIEAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFEVKREILCK---CIY 446 Query: 263 RLESDPRRDLS-----------------------------KNIQQGSTLSKDL------- 286 ++ D + NI G++L Sbjct: 447 GIDKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSLIDSGDKVKQED 506 Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 T +F + NPP+ + + R K D LF Sbjct: 507 IFSINPFDLTNYQFDVIVGNPPY---MATEHMNQLTPKELDIYKRKYKSAYKQFDKYFLF 563 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DL 397 + L+ G +L ++R++L EN + +++ + + Sbjct: 564 IERSIQILKEY----GYLGYILP----SRFIKVDAGKKLRKFLSENKYLSKLISFGSHQV 615 Query: 398 FFRTNIATYLWILSNRKTEE 417 F T L L+ + Sbjct: 616 FKNKTTYTCLLFLNKENHDN 635 >gi|157826496|ref|YP_001495560.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii OSU 85-389] gi|157801800|gb|ABV78523.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii OSU 85-389] Length = 480 Score = 63.8 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 47/258 (18%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI-------ARLEKA-----GLLYK 135 L + + L+ Y K +F + +TI +R +KA + K Sbjct: 214 LKKYNNNEINDVLQHYANVIRPKIKDLFPEGSDKTTIINGTIFVSRDQKAIDGYGTVFKK 273 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + F + + S ++E ++ S + F TP VV + Sbjct: 274 VLEKFRDY-GKLEHIDHDFKSKLFESFLKE--SISKKNWGQFFTPIKVVRAINEMAEGEL 330 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDA-----MNHVADCGSHHKIPPILVPHGQELEPE 250 ++ DP CG G F + N ++ + + + Sbjct: 331 K--------KNMSICDPACGVGKFPLEFVKENLDNFFELKNGKINSKVKIIGFDKGFDKD 382 Query: 251 ---THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------------FH 293 T + A MLI E +D ++ ++ + L D F K + Sbjct: 383 EQKTIILAKANMLIYFCE--LIKDNPEHTKEFAKLFNDSFILKTNSILGTLSEPIEGEYD 440 Query: 294 YCLSNPPFGKKWEKDKDA 311 L+NPP+ + Sbjct: 441 LILTNPPYVTSGSSNLKE 458 >gi|302380041|ref|ZP_07268520.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302312267|gb|EFK94269.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] Length = 154 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%) Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162 D+ K +FED D +T ++L EK L I I + + YE+L Sbjct: 23 DDIKGLFEDVD--TTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYL 80 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 + S + +F T + V L L++D ++ K +YDPTCG Sbjct: 81 TSNYASNAGKSGGEFFTLQTVSKLLAKLVMDGKTSINK--------VYDPTCG 125 >gi|262373837|ref|ZP_06067115.1| predicted protein [Acinetobacter junii SH205] gi|262311590|gb|EEY92676.1| predicted protein [Acinetobacter junii SH205] Length = 996 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 55/373 (14%), Positives = 103/373 (27%), Gaps = 84/373 (22%) Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL---HPDTVPDRVM 155 N E Y FS E F +L ++ VP ++ Sbjct: 230 NSEDYNEFFSQ-IGDESEHICFELQ-------DILLATINRQMSLDWGRIQFQHVPADML 281 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 S +YEH + +E + TP + + + + DP+ G Sbjct: 282 SQVYEHFAHAYQNEFARKTSIHYTPSHIAKILVDSAF----DGLEIEDKSSAQILDPSAG 337 Query: 216 TGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 G FL A + + + G ++ E+ + + LE Sbjct: 338 AGVFLVLAFKRLVLEKWKITGERPTRNQIRGILNHQLVGLDINSESLKFAALSLYLTALE 397 Query: 266 SDPRRDLSKNIQQG---------STLSKDLFT-------------GKRFHYCLSNPPF-- 301 DP+ ++ + +DL +RF + NPP+ Sbjct: 398 LDPKPTPLSELKFDGLNTKTLINVSFGEDLQETLGSLSERLPVELNERFDIVVGNPPWTK 457 Query: 302 ----GKKWEKDKDAVEKEHKNGELGR----FGPGLPKISDGSMLFLMHLANKLELPPNGG 353 G + ++ G + F G D + F+ + Sbjct: 458 QRGRGVGEKFNELIERIAISRGIDSKVASQFNVGC----DPDIPFIWRAIEWCKP----N 509 Query: 354 GRAAIVLSSS-PLFNGRAGSGESEIRRWLLENDLIEAI----------VALPTDLFFRTN 402 G A L + LFN ++L + L++ I + ++ + Sbjct: 510 GMIAYALHAQHTLFNYGNS--------FILRSALLDCIELTGIFNGSALRQEKAIWENND 561 Query: 403 IATYLWILSNRKT 415 I N+K Sbjct: 562 APFCFLIAKNKKP 574 >gi|212715992|ref|ZP_03324120.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum DSM 16992] gi|212661359|gb|EEB21934.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum DSM 16992] Length = 73 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71 N IW A+ + + D+ K+ILPF +LRR ECALEPTR V + A + D Sbjct: 11 VNDIWSIADYVRDVIRPADYNKLILPFAVLRRFECALEPTRDKVLARKKAAMWDDADTGE 70 Query: 72 FVK 74 ++ Sbjct: 71 VLE 73 >gi|308229511|gb|ADO24166.1| RM.AcuI [Acinetobacter calcoaceticus] Length = 1000 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 55/392 (14%), Positives = 114/392 (29%), Gaps = 79/392 (20%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAK----AIFEDFDFSSTIARLEKAGLLYKICKN--F 140 + TL + + N+ + I F + +F+ I + + + + I K + Sbjct: 252 TYQTLLNFASSNDFSALIDKFKQADRCYNSGLFDQLLTEQIIEDI--SSVFWVIIKQLYY 309 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATA 189 ++ NIYE + + + TP +++ Sbjct: 310 PESPYSFSVFSSDILGNIYEIFLSEKLVINQSRVELVKKPENLDRDIVTTPTFIINDILR 369 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---PHGQE 246 + P + + D CG+G FL + + D + + P G Sbjct: 370 NTVLPKCYGKTDIEILQLKFADIACGSGAFLLELFQLLNDTLVDYYLSSDTSQLIPTGIG 429 Query: 247 LEPETHAVCVAGML--IRRLESDPRRDLSK-----------------------------N 275 ++ + +L I ++ D + N Sbjct: 430 TYKLSYEIKRKVLLSCIFGIDKDLNAVEAAKFGLLLKLLEGEDVQSIANIRPVLPDLLDN 489 Query: 276 IQQGSTLSKDL--------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 I G++L + F+ +F + NPP+ + + + Sbjct: 490 ILFGNSLLEPEKVELDHQVEVNPLDFSDLKFDVIVGNPPY---MKSEDMKNITPLELPLY 546 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 + K D LFL L+ G ++ S G ++R L Sbjct: 547 KKNYVSAYKQFDKYFLFLERGLALLKEE----GILGYIVPSKFTKVGAG----KKLRELL 598 Query: 382 LENDLIEAIVALPTD-LFFRTNIATYLWILSN 412 + +++IV+ + +F T L IL Sbjct: 599 TDKGYLDSIVSFGANQIFQDKTTYTCLLILRK 630 >gi|328676572|gb|AEB27442.1| Adenine specific DNA methyltransferase [Francisella cf. novicida Fx1] Length = 1030 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 76/593 (12%), Positives = 170/593 (28%), Gaps = 136/593 (22%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 V + + + F L L N++ I DN Sbjct: 195 YHDEVLDTFSRQEAAE------KIPKSNPF-------LRRLFDYVAGTNIDDRIKHTVDN 241 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 +F D +++ ++ +F YE + + S++ Sbjct: 242 LADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDSKL 283 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------------------- 208 + + TP+ VV + + + F S G+ T Sbjct: 284 RKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRAKSGYKQ 343 Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQELEPE 250 + DP GTG FL +A+ + + + I +G EL Sbjct: 344 IEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELLMA 403 Query: 251 THAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------------------SKD 285 ++A+ ML+ + + +I ++L + Sbjct: 404 SYAMAHLKLYMLLTDTGYKPKSTQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEANQ 463 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + + NPP+ + ++ K+ + + D + Sbjct: 464 IKKDTPVMVVMGNPPYSVSSSNKGEWIQDLIKDYKKNLNERKI--NLDDDYIKFTRYGQH 521 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVAL----------P 394 + G G A + ++S + G ++R+ LLE+ D I I+ L P Sbjct: 522 -YIDRTGEGVLAYISNNSFI----DGITHRQMRKSLLESFDKIY-IIDLHGNSKKKEICP 575 Query: 395 T-----DLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 ++F ++ +++ + K + +V + K +N + Sbjct: 576 DGSKDENVFDIMQGVSINIFVKTGVKKKGELAEVY------HYDLFGKRNYKYDFLNQND 629 Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508 + I + + + FG +++ F +D L +L + Sbjct: 630 LKNISWNKLEYTEPNY--FFVKKDFG-----LIKQYEKGFKIDD--LYKLGSSGIETAKD 680 Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561 + F D + +++ + K I ++ +K S+ + Sbjct: 681 KVIIQFTKDDINRVIEDFETLAVDDLNHKYQINIDKVNQVKNDLDNSYKTKIL 733 >gi|294792084|ref|ZP_06757232.1| type I restriction-modification system, M subunit [Veillonella sp. 6_1_27] gi|294457314|gb|EFG25676.1| type I restriction-modification system, M subunit [Veillonella sp. 6_1_27] Length = 162 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 6/76 (7%) Query: 9 ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-- 66 A L ++ A+ L G + +L + L L + V + Y + + Sbjct: 3 AELNQKLFSAADSLCGKMSADQYKDYLLGLIFYKYLSDKLLES--TVVKAYKSLDDIDTH 60 Query: 67 --IDLESFVKVAGYSF 80 + +K+ F Sbjct: 61 VIDKDSNLLKIKREYF 76 >gi|332665172|ref|YP_004447960.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] gi|332333986|gb|AEE51087.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100] Length = 621 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 100/332 (30%), Gaps = 38/332 (11%) Query: 97 RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N + +Y+ S+S + + I F +S + L I + + Sbjct: 2 NNAIFTYLKSYSTDPFKVDRLIISAFLYSLDLQNTGNQFLQQYIIQKEDDDNQNLKEFLS 61 Query: 153 RVMSNIYEHLIRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + E LIR F E TP+++ + D L Sbjct: 62 IHLFTEIEELIRVFEFVISPEDKILTGAIYTPKNIRDYIFEQCFEHTDDLNNVK------ 115 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DP CG GGFL A + D + + +G +++ + + L Sbjct: 116 ICDPACGCGGFLYTAAKTIHDQTGKSYQTIFVDNIYGLDVQMYAINRSKLLLTLLGLTEG 175 Query: 268 PRRDLSKNIQQGSTL---SKDLFTGKR-FHYCLSNPPF--GKKWEKDKDAVEKEHKNGEL 321 D N+ G+ L + + F + NPP+ + + + + + K E Sbjct: 176 ENADFEFNLDLGNALNFKWAGHYPNFQGFDIVVGNPPYVCSRNIDDESKELIFDWKVSES 235 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 G +P F L G + +R++ Sbjct: 236 GHPDLYIP--------FFQIGIENLRPQGVLGFI--------TMNTFFKSVNGRALRQYF 279 Query: 382 LENDLIEAIVALPTD-LFFRTNIATYLWILSN 412 + L I+ + +F + T + I+ Sbjct: 280 EDQALALKILDFGGNQVFQNKSTYTCICIIRK 311 >gi|309704637|emb|CBJ03987.1| putative type II restriction enzyme [Escherichia coli ETEC H10407] Length = 1004 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 58/440 (13%), Positives = 117/440 (26%), Gaps = 91/440 (20%) Query: 33 KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 I LR E + Y + + YN+ +SL + Sbjct: 232 NYINSIVFLRVCEDRDLEEYETL---YHFAQDKDFQSLVKKLKSSDKKYNSGLFSLEYID 288 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTV 150 +++ + +I E F + + +L I + F ++ D + Sbjct: 289 ---------ELLSNANSCIWSIIEQLYFPQSTYSFSVFSSDILGNIYEIFLSEKVRVDEL 339 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + EH+ + TP +V + + + Sbjct: 340 GNVKIQPKEEHI----------DRDVVTTPTHIVKEIIRNTVVEYCKGKSDIEILNSKFA 389 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIR 262 D CG+G F+ +A + D + I + + E + +C I Sbjct: 390 DIACGSGAFIIEAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFEVKREILCK---CIY 446 Query: 263 RLESDPRRDLS-----------------------------KNIQQGSTLSKDL------- 286 ++ D + NI G++L Sbjct: 447 GIDKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSLIDSGDKVKQED 506 Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 T +F + NPP+ + + R K D LF Sbjct: 507 IFSINPFDLTNYQFDVIVGNPPY---MATEHMNQLTPKELDIYKRKYKSAYKQFDKYFLF 563 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DL 397 + L+ G +L ++R+ L EN + +++ + + Sbjct: 564 IERSIQILKDH----GYLGYILP----SRFIKVDAGKKLRKLLSENKYLSKLISFGSHQV 615 Query: 398 FFRTNIATYLWILSNRKTEE 417 F T L L+ + Sbjct: 616 FKNKTTYTCLLFLNKENHDN 635 >gi|294783683|ref|ZP_06749007.1| hypothetical protein HMPREF0400_01677 [Fusobacterium sp. 1_1_41FAA] gi|294480561|gb|EFG28338.1| hypothetical protein HMPREF0400_01677 [Fusobacterium sp. 1_1_41FAA] Length = 627 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 19/216 (8%) Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 ++ L P ++ K+ D + + F + + + LF + N L+ Sbjct: 233 EKLDKILLAPSLTFEYSKN-DEEKYRNMIQNDFNFQNEILEKTSLEWLFNLLTINHLKDD 291 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GRA V+ + L N + +R++ +EN IE+I+ LP ++ ++++ L + Sbjct: 292 ----GRALSVVKINTLSNPKN----KNVRKYFIENGYIESIILLPENILIGSSVSLALIV 343 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKR-----RIINDDQRRQILDIYVSRENGKF 464 S K++ ++A++ +T R + R +I+ ++ R I S +N + Sbjct: 344 FSKG-----NKKIRFVDASNFYTKERRKKGDRLNPTKKILEENNIRDIFKFLNSDDNSEI 398 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 S F + + I + +++ Sbjct: 399 SISKGIEEFSENDYNLDVIENIEVIPEFENSKKIKE 434 >gi|227326889|ref|ZP_03830913.1| putative type I restriction-modification system methyltransferase subunit [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 717 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 22/179 (12%) Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 + V ++ +++ +R G ++TP V + + D + Sbjct: 293 AKEHGTLADVSGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDE 351 Query: 201 ESPGM---IRTLYDPTCGTGGFLTDAMNHVADCGS------------HHKIPPILVPHGQ 245 + DPTCG+ GF + A++ + + G Sbjct: 352 MRSRLANGDFRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRNYAFTGA 411 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 + P + M ++ ++L+ F +NPPFG Sbjct: 412 DAAPRMVMLARVNMALQGAPKAQIFYT------DNSLTTKALQPNSFDLICTNPPFGTP 464 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%) Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385 D ++LF+ L+ GGR IVL L SG+ +R +++ + D Sbjct: 575 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 626 Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429 +++A+++LP+D F T T + L R E + V + A Sbjct: 627 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 686 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 L ++N + + +I+ Y E Sbjct: 687 LGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 717 >gi|332975178|gb|EGK12078.1| hypothetical protein HMPREF0476_0077 [Kingella kingae ATCC 23330] Length = 505 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 28/257 (10%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-------T 221 S+ +TP +V+ ++ + R + +P CG G FL Sbjct: 10 NKSKQLGQVITPAWIVNEILDACHYAGCSILR------RYVLEPACGNGAFLSEMVSRYI 63 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A G EL+P +A C+ + + +++ I +T Sbjct: 64 AAAKAEQQSNEQIAAELAQYIVGVELDPVAYADCITRLNHIVQQELGLPNIAWRIHNQNT 123 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L F + + NPP+ + D+ + + RF G D + F Sbjct: 124 LDFYRDYVGYFDWVVGNPPYIRLHRLDEA---MRARLKQQFRFTHGTT---DMYLAFFEM 177 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFR 400 L G+ + +S L N + R++L + + A+ ++ LF Sbjct: 178 AFAMLNPK----GKLGFITPNSFLHN----TSYQAFRQFLQQQGYLIALYDFKSNKLFEG 229 Query: 401 TNIATYLWILSNRKTEE 417 + T + I + + Sbjct: 230 FSTYTAISIFDKQHQQS 246 >gi|225619645|ref|YP_002720902.1| Modification methylase [Brachyspira hyodysenteriae WA1] gi|225214464|gb|ACN83198.1| Modification methylase [Brachyspira hyodysenteriae WA1] Length = 406 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 49/280 (17%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 ++ E + + TP+ + L L+ + DP CG+G FL Sbjct: 13 LKNTDIEKRKKLGQYFTPKSIRDLLLKELVY------ISEKKDNVKILDPACGSGEFLLS 66 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + I +G +++ ++ + + +I+ +L Sbjct: 67 CNEYFK----------IPKLYGFDIDESLVSISK------------KLIKNADIKCLDSL 104 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 D ++ Y + NPP+ K ++K+H + GR + + Sbjct: 105 KLDTKKSIKYDYVIGNPPYF--EFKPDKELKKKHNDIISGRVN-------------IFSI 149 Query: 343 ANKL-ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFR 400 KL GG A V+ S G+ S++R +++ +E + + +D F+ Sbjct: 150 FIKLGLELLEDGGYLAYVVPPSM----NNGAFFSKLREYIMNISSVEYLHIVDGSDNFYM 205 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 N L IL + + + + N ++T + K Sbjct: 206 ANQKVMLLILKKTNSHKNKKYIFSKNDITIFTEDKAFLNK 245 >gi|308062175|gb|ADO04063.1| type I restriction-modification system, M subunit [Helicobacter pylori Cuz20] Length = 121 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 14/97 (14%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48 M A L N IWK A +L G DF + +L R + + Sbjct: 1 MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60 Query: 49 --EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83 E + Y + + F+ Sbjct: 61 NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGFFIP 97 >gi|311898038|dbj|BAJ30446.1| hypothetical protein KSE_46650 [Kitasatospora setae KM-6054] Length = 688 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 76/222 (34%), Gaps = 31/222 (13%) Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + DP CGTGG L A G V + +D Sbjct: 208 VLDPACGTGGVLLAAPGT-ERLGQEGDPALAGVALLRLALAA--------------PADA 252 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG 327 L +++ G L D F G+ L PP+ ++ + R+ G Sbjct: 253 PGPLPLDVRPGDALRADAFPGRAADAVLCRPPYNERDWGHD-------QLQYDARWPGRL 305 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 +P + + +++H GG A ++L + +R L+ + + Sbjct: 306 VPPRGESELAWVLHCLAHTRP----GGTAVLLLPPTVASRRAGR----RVRAELVRSGAL 357 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 A+ ALP + ++W+L + + V L++AT+ Sbjct: 358 RAVAALPAGAAPPYGVPLHVWVLRGPEPGDEFRHVLLLDATE 399 >gi|150025618|ref|YP_001296444.1| endonuclease-methyltransferase fusion protein [Flavobacterium psychrophilum JIP02/86] gi|149772159|emb|CAL43635.1| Probable endonuclease-methyltransferase fusion protein [Flavobacterium psychrophilum JIP02/86] Length = 995 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 59/393 (15%), Positives = 114/393 (29%), Gaps = 80/393 (20%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAK----AIFEDFDFSSTIARLEKAGLLYKICKN--FS 141 TL T ++ + I FS K +F+ + I L + + ++I K+ F Sbjct: 247 YQTLLQLATNDDFNALIDKFSKADKKYNSGLFDQLLSNEIIKNL--SSVFWEIIKHLYFP 304 Query: 142 GIELHPDTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATAL 190 ++ NIYE + + + TP +++ Sbjct: 305 ESPYSFSVFSSDILGNIYEIFLSEKLSIVTGKIELIKKPENVDKDIVTTPTYIINDILRN 364 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 + P + ++ D +CG+G FL + + D + + + Q Sbjct: 365 TVIPKCKDKTDKEILLLKFADISCGSGAFLLELFQLLNDIVIDYYLKNDVTKLIQTNIDT 424 Query: 251 ---THAVCVAGML--IRRLESDPRR-----------------------------DLSKNI 276 + +L + ++ D DL NI Sbjct: 425 YKLPFEIKKEILLNCVFGVDKDYNAVEASKFGLLLKLLEGEDVNSVNKNNPILPDLDSNI 484 Query: 277 QQGSTLSKD---------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 G++L F +F + NPP+ K +D + Sbjct: 485 FFGNSLINSSEIKENKNLEIINPYDFEDLKFDVIIGNPPYMKS--EDMKNITPIELPIYK 542 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F K D LF+ L G ++ S G +R L Sbjct: 543 DNFKSAY-KQFDKYFLFIEQGLKLLNDD----GVLGYIVPSKFSKVGAG----KNLRELL 593 Query: 382 LENDLIEAIVALPTD-LFFRTNIATYLWILSNR 413 +N ++ +++ + +F T L S + Sbjct: 594 SKNGNLQTLISFGANQVFKDKTTYTCLLFTSKK 626 >gi|59800800|ref|YP_207512.1| hypothetical protein NGO0356 [Neisseria gonorrhoeae FA 1090] gi|194098090|ref|YP_002001138.1| hypothetical protein NGK_0513 [Neisseria gonorrhoeae NCCP11945] gi|239998547|ref|ZP_04718471.1| hypothetical protein Ngon3_03584 [Neisseria gonorrhoeae 35/02] gi|240013672|ref|ZP_04720585.1| hypothetical protein NgonD_03320 [Neisseria gonorrhoeae DGI18] gi|240016111|ref|ZP_04722651.1| hypothetical protein NgonFA_02913 [Neisseria gonorrhoeae FA6140] gi|240112465|ref|ZP_04726955.1| hypothetical protein NgonM_02591 [Neisseria gonorrhoeae MS11] gi|240115205|ref|ZP_04729267.1| hypothetical protein NgonPID1_02968 [Neisseria gonorrhoeae PID18] gi|240117491|ref|ZP_04731553.1| hypothetical protein NgonPID_03376 [Neisseria gonorrhoeae PID1] gi|240123045|ref|ZP_04736001.1| hypothetical protein NgonP_03736 [Neisseria gonorrhoeae PID332] gi|240125298|ref|ZP_04738184.1| hypothetical protein NgonSK_03603 [Neisseria gonorrhoeae SK-92-679] gi|240127751|ref|ZP_04740412.1| hypothetical protein NgonS_03775 [Neisseria gonorrhoeae SK-93-1035] gi|260440977|ref|ZP_05794793.1| hypothetical protein NgonDG_07826 [Neisseria gonorrhoeae DGI2] gi|268594405|ref|ZP_06128572.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596402|ref|ZP_06130569.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268598533|ref|ZP_06132700.1| N-6 DNA methylase [Neisseria gonorrhoeae MS11] gi|268600885|ref|ZP_06135052.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18] gi|268603191|ref|ZP_06137358.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1] gi|268681672|ref|ZP_06148534.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332] gi|268683899|ref|ZP_06150761.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679] gi|268686142|ref|ZP_06153004.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035] gi|291044305|ref|ZP_06570014.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399496|ref|ZP_06643649.1| hypothetical protein NGNG_01480 [Neisseria gonorrhoeae F62] gi|59717695|gb|AAW89100.1| hypothetical protein NGO0356 [Neisseria gonorrhoeae FA 1090] gi|193933380|gb|ACF29204.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|268547794|gb|EEZ43212.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268550190|gb|EEZ45209.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268582664|gb|EEZ47340.1| N-6 DNA methylase [Neisseria gonorrhoeae MS11] gi|268585016|gb|EEZ49692.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18] gi|268587322|gb|EEZ51998.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1] gi|268621956|gb|EEZ54356.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332] gi|268624183|gb|EEZ56583.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679] gi|268626426|gb|EEZ58826.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035] gi|291011199|gb|EFE03195.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610065|gb|EFF39187.1| hypothetical protein NGNG_01480 [Neisseria gonorrhoeae F62] gi|317163822|gb|ADV07363.1| hypothetical protein NGTW08_0391 [Neisseria gonorrhoeae TCDC-NG08107] Length = 274 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 36/169 (21%) Query: 251 THAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEK 307 A+ + M++R +++ + + KR + NPP+ + Sbjct: 1 MFALAASNMILRGDGKANLHQSSCFMTDFQDLIKNPKPETGLKRPNVGFLNPPYAQS--- 57 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 SD + L + L++ GG AI+ S + Sbjct: 58 -----------------------KSDAELHELYFVKEMLDMLAEGGTGIAIIPVSCVIAP 94 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 +A S +++ ++A++++P++LF+ T + + K Sbjct: 95 SKAKS-------EIVKYHRLKAVMSMPSELFYPVGTVTCIVVFEAHKPH 136 >gi|296132848|ref|YP_003640095.1| putative RNA methylase [Thermincola sp. JR] gi|296031426|gb|ADG82194.1| putative RNA methylase [Thermincola potens JR] Length = 689 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 76/499 (15%), Positives = 143/499 (28%), Gaps = 84/499 (16%) Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 L + L + K F + + V+ I+E + + + + TP V Sbjct: 79 ENLMDSIALEVVEKFFGERDNYLTKHEFPVILGLIHECFLEK--KNQRKPTGIYYTPEPV 136 Query: 184 VHLATALLLDPDDALFKESPGMIR----------------TLYDPTCGTGGFLT-DAMNH 226 VH L A R + DP CG+G FL + Sbjct: 137 VHYMVNRTLQAFFADLLNKIRKDRADYRILQEHLTKLKNHAVIDPACGSGAFLVYIFRQY 196 Query: 227 VADCGSHHKIP-------------------------PILVPHGQELEPETHAVCVAGMLI 261 + +I G +++P+ + + Sbjct: 197 LKFYQQLGEIFSSATPLSGEVRQGNVVVPENLSSHIMDNHIRGIDVDPDAVRLTRLALYY 256 Query: 262 RRLESDPRRDLSK------NIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVE 313 + +Q +TL ++ + NPP+ K Sbjct: 257 YGINHCAGDFKGFLKSLEVAVQWSNTLEISPERRVKYDLVIGNPPYIANKSIPAGLKKNI 316 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 KE +F +P F+ L+ GG + ++S+ + Sbjct: 317 KELFPTATSQFDSIVP--------FMEFGIKSLKP----GGILSYIVSNKFMVADYGI-- 362 Query: 374 ESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 E+RR +L+ ++ +V + + +F +I + IL NR + V +I+ L Sbjct: 363 --ELRRLMLKETTLKKLVDVSSQKIFADASIYPVILILENRAPGKNS-VVTIIDGIVL-- 417 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492 K N + Q D +++ S + P R++ Sbjct: 418 ---PGKNKIEEQNPNTIPQ--DFFLNLGPSLISTGISRGILPVIEKINAWPGRLNTKDIH 472 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552 G+A P ++ W IL + I Y E+ S + K+ Sbjct: 473 CGIATAGFGKHITS-EPDKKTEWFRIL--LAGDINNYRVKETEKFISAVHVSKQQNKLF- 528 Query: 553 SKSFIVAFINAFGRKDPRA 571 I + R+ A Sbjct: 529 --REIKLVVPGIARRLKAA 545 >gi|217034514|ref|ZP_03439925.1| hypothetical protein HP9810_873g30 [Helicobacter pylori 98-10] gi|216943055|gb|EEC22534.1| hypothetical protein HP9810_873g30 [Helicobacter pylori 98-10] Length = 75 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 8/53 (15%) Query: 1 MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE 45 M A L N IWK A +L G DF + IL R + Sbjct: 1 MENKNTQAPKSSSLERNELHNTIWKIANELRGSVDGWDFKQYILGILFYRYIS 53 >gi|300813794|ref|ZP_07094101.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512084|gb|EFK39277.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 86 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 6/91 (6%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + IW A LWG ++ KVI+ LR + A E + + + Sbjct: 1 MAEKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISSAFERKYNELVAE-- 58 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 G + + + F+ +L +L Sbjct: 59 ---GEGFEEDRDEYLGENIFFVPEN-TLQSL 85 >gi|110598200|ref|ZP_01386477.1| hypothetical protein CferDRAFT_0756 [Chlorobium ferrooxidans DSM 13031] gi|110340214|gb|EAT58712.1| hypothetical protein CferDRAFT_0756 [Chlorobium ferrooxidans DSM 13031] Length = 1304 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 85/346 (24%), Gaps = 60/346 (17%) Query: 31 FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 + IL ++ T+ ++ +E K+A Y Sbjct: 288 YR--ILFLIVIEERNLVYAETKDEELQRQRKLYYDYYSIERLRKLAAKLHYIDGR---KH 342 Query: 91 LGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIARLE-KAGLLYKICKNFSG 142 + + F IF + L L K+ + + Sbjct: 343 DLWQGLKATFRLFEDGFYGERLGIKPLGSGIFSAVAL-GQLPTLSLSNEALLKVIRRLTF 401 Query: 143 IELHPDTV--------PDRVMSNIYEHLIRRFGS---------------EVSEGAEDFMT 179 E ++YE L+ + + T Sbjct: 402 FENEQKQQVRVNYSDLDVEEFGSVYEGLLEYDAEFREINGITHFTFKEGKGRSESGAHYT 461 Query: 180 PRDVVH-LATALLLDPDDALFKESPGM----IRTLYDPTCGTGGFLTDAMNHVA------ 228 P ++V L L + K + + D CG+G L A +A Sbjct: 462 PEELVKPLIKYSLDYVIEERLKAANPEQSLLSIRVCDVACGSGHILLSAARKIAIEVARV 521 Query: 229 ----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQ 277 + +G + P +C + + +P L +I+ Sbjct: 522 RTKEEQPSPTAMRHALRDVIRTCIYGVDKNPLAVNLCKVALWLEAHNPGEPLNFLDHHIK 581 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 G + + F +++ F DK K ++ R Sbjct: 582 CGDAIVGLAHQEELFR-GIADEAFKALPGDDKLIASALAKRNKIER 626 >gi|307269754|ref|ZP_07551084.1| type III restriction enzyme, res subunit [Enterococcus faecalis TX4248] gi|306513864|gb|EFM82466.1| type III restriction enzyme, res subunit [Enterococcus faecalis TX4248] Length = 1567 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 95/311 (30%), Gaps = 39/311 (12%) Query: 108 SDNAKAIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S+ I E+ F ++ Y K + + + ++ +Y+ + Sbjct: 787 SEAMDKIVEELSRFGGFNKEQDELKEFYDSVKLRAEGIDNAEAKQRIII-TLYDKFFSKG 845 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMN 225 E ++ TP +VV + D F K + DP GTG F+ ++ Sbjct: 846 FKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKAIEDEGVHILDPFTGTGTFIVRTLH 905 Query: 226 HVADC-------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQ 277 ++ D + H E+ ++ + + E + + + I Sbjct: 906 YLKDKLAKGEITLADITRKYTQELHANEIVLLSYYIAAINIESTFAEMNHQEYKPFEGIV 965 Query: 278 QGSTLS----KDLFTGKRFH---------------YCLSNPPFGKKWEKDKDAVEKEHKN 318 T +D F + NPP+ K + + + Sbjct: 966 LTDTFESTEQEDTLDDTFFRTNDERLKRQQEVPVKVIMGNPPYSAKQKNEDGNQIRTAYE 1025 Query: 319 GELG---RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 F ++ + LF ++ + G + ++S + +G A G Sbjct: 1026 KLDSSLQTFWVKTSTATNKNNLFDSYIRAMRWSSNRISDNGVIGFITNNSFI-DGNAMDG 1084 Query: 374 ESEIRRWLLEN 384 +R+ LLE Sbjct: 1085 ---MRKSLLEE 1092 >gi|116688241|ref|YP_833864.1| N-6 DNA methylase [Burkholderia cenocepacia HI2424] gi|116646330|gb|ABK06971.1| N-6 DNA methylase [Burkholderia cenocepacia HI2424] Length = 578 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 70/234 (29%), Gaps = 33/234 (14%) Query: 167 GSEVSEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 G E + F TP + L L D +R DP CG FL Sbjct: 91 GEERRKQLAMFFTPPSLTKRLLDDLSASGVDFS-------VRKFCDPACGGAAFLAPIAM 143 Query: 226 HVADCGSHHKIPPILVPHGQELE----PETHAVCVAG-----MLIRRLESDPRRDLSKNI 276 + D + + + A+C M++ I Sbjct: 144 RMRDALRERGTSATQILDHVQRHLLGFDKDAALCEMSKHFLLMVLHDEVVATGARPKFQI 203 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 QG +L + + NPPF K + + F + + Sbjct: 204 HQGDSLIRAQSLLGALDVVVCNPPFRKMPSAEVAHYLEH--------FADIIEAQPNLYA 255 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 LF+ L GG A+V +S L +G S++R +LL + +I Sbjct: 256 LFMALCVKLLAP----GGTCALVTPTSFL----SGQYFSKLRTFLLTQANVLSI 301 >gi|303241443|ref|ZP_07327946.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2] gi|302591052|gb|EFL60797.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2] Length = 2215 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 58/411 (14%), Positives = 117/411 (28%), Gaps = 81/411 (19%) Query: 43 RLECALEP--TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100 L+ LE ++ + E Y+ + ++ + Sbjct: 550 FLDKPLEEQGNYDNLKNDNNSLEAEENQEEILSTDEKYNEDSPNKINFQY------SERY 603 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVPDRVM 155 Y K E + R+E L + + G + D V Sbjct: 604 NLYPNGAKTKYKNNIEAIKM---LKRIESENRLADHDEQIVLARYVGWGGLANAFSDTVT 660 Query: 156 S--NIYEHLI-----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 N Y+ L + + + + T D++ + F + G R Sbjct: 661 GWENEYQELKHLLDEKEYEDARNSTITAYYTEPDLIKHMYNAI-----RQFGFAGGKNRK 715 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + DP GTG F + + + D +G E++ T + L ++ E Sbjct: 716 ILDPAMGTGNFFSVLPDGLKDTA----------IYGVEIDSITGRIAKQ--LYQKGEISV 763 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + + N + F L N PF DK E++ + Sbjct: 764 QGYETTN-----------YEDNSFDIILGNIPFNNIKLYDKRYAEEDFLIHDY------- 805 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 F+ + L+ GG + S + ++++R ++ E + Sbjct: 806 ---------FIAKSLDLLKP----GGIIGFITSKGTM-----DKKDTKVREYIAERADLI 847 Query: 389 AIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 + LP + F T + + + K L + ++T R Sbjct: 848 GAIRLPNNAFKALAGTEVTADILFFQKYSSPRNLDKFSLPD--WVFTDTRK 896 >gi|331669721|ref|ZP_08370567.1| type I restriction-modification system, M subunit [Escherichia coli TA271] gi|331063389|gb|EGI35302.1| type I restriction-modification system, M subunit [Escherichia coli TA271] Length = 203 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 9/111 (8%) Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408 GGR+A ++ LF + +R+ L+E++ +EA++ LP+ +F +AT + Sbjct: 2 LKVGGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAIL 59 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 I + + +V + + + KR I D+ +L + Sbjct: 60 IFTKG---GQTDEVWFYDLQNDGY---SLDDKRNPIKDNDLPHLLASWKHY 104 >gi|255316512|ref|ZP_05358095.1| restriction modification system DNA specificity subunit [Clostridium difficile QCD-76w55] Length = 282 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 68/329 (20%) Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDP 194 ++ + + RV++ +I+ + F TP V++ Sbjct: 9 IEDNRKVSNLLEESRRRVLNEEEIEIIKNMHTGYGGISNNTQFFTPEVVINYML------ 62 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 + + + +P+CG G F+ + + EL E H + Sbjct: 63 --DSLEATGFKGGKILEPSCGNGKFV----------NALISKFENVEITSVELNNELHYL 110 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + + N G L +F + NPPFGK ++D Sbjct: 111 ------------NKICYPNVNTINGDCLEYLKEFEGKFDLVIGNPPFGKSCKRDG----- 153 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 F G S F L+ GG +VL S L + Sbjct: 154 ---------FEFG---KSSLESYFFELSLRALKE----GGSLIMVLPDSILSS----KKY 193 Query: 375 SEIRRWLLENDLIEAIVALPTDL--FFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432 +R++ ++N I ++LPT F+ T++ T + L +K + + D Sbjct: 194 FNLRKFTVDNFRIIQSISLPTTTFYFYGTSVKTSILHL-KKKDCNNKDYSIFMGIVDKIG 252 Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN 461 K + + Y + Sbjct: 253 WDSKGNKNENEL--------ISAYHEFKE 273 >gi|29347999|ref|NP_811502.1| type I restriction enzyme, M subunit [Bacteroides thetaiotaomicron VPI-5482] gi|29339901|gb|AAO77696.1| type I restriction enzyme, M subunit [Bacteroides thetaiotaomicron VPI-5482] Length = 256 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 24/186 (12%) Query: 91 LGSTNTRNNLESYI-ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L N N+ +YI FS A +++ + + ++ +L + + + Sbjct: 26 LDPVNVFNDFLTYIIHGFSPGAPP-LQNWKYKR-LQNMKFMEMLTGWVQLMASRIKDDTS 83 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 D ++Y L+ + + F TP + L + + + Sbjct: 84 WYDP-FGDLYMALVSKSAQQS---QGQFFTPVHICDLMVLCTQTEEKMT-------GQRM 132 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 DPTCG+G L +H P G+++ + V MLI + Sbjct: 133 GDPTCGSGRLLLA----------YHARNPENYLIGEDINRTCCLMTVCNMLIHGCVGEVI 182 Query: 270 RDLSKN 275 S N Sbjct: 183 CHDSLN 188 >gi|317178177|dbj|BAJ55966.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16] Length = 676 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 71/302 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + R + + +TP V L L D+ ++D G Sbjct: 342 GKLFNEMYRWLDFTKDQLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 391 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L +MN + + G E+ + H + V M++ Sbjct: 392 SAGLLVASMNLMIEDAKRCITSPKELEQKIVHIKAKQLLGIEIRQDIHTLAVLNMILMG- 450 Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I +LS K + + + NPP+ + Sbjct: 451 ------DGSSQILNQDSLSGFDGKVNNEAFKANAFVLNPPYSASGKG------------- 491 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M+F+ K++ G A++++ SS G + E +R Sbjct: 492 ---------------MVFVEQALEKMQS-----GYASVIIQSS---TGSGKAKEYNVR-- 526 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE + A + +P DLF +++ T++++ + + + +V+ IN ++ + N K Sbjct: 527 ILEKHTLLASIKMPLDLFIGKSSVHTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 586 Query: 440 KR 441 + Sbjct: 587 AK 588 >gi|153870743|ref|ZP_02000078.1| helicase domain protein [Beggiatoa sp. PS] gi|152072790|gb|EDN69921.1| helicase domain protein [Beggiatoa sp. PS] Length = 815 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 32/258 (12%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRT 208 ++ IYE + F +V++ TP+ +V + + F K Sbjct: 71 YKQHFLNTIYERFFQGFSIKVADTHGIVYTPQPIVDFMVRSVEEILQREFGKSLVDKGVH 130 Query: 209 LYDPTCGTGGFLTDAMNHVADCGS-HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DP GTG F+T + + G H E+ + + + + LE Sbjct: 131 ILDPFVGTGNFITRIIQEIRTHGKMKLDYKYRHELHCNEIMLLPYYLACMNIEHQYLELM 190 Query: 268 PRRDLSKNIQQGSTL-----------------SKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 R + I T F + NPP+ + D Sbjct: 191 GRYRPYEGICLADTFELAENKQKELFVPENTERVKQQQKSEFFVIIGNPPYNAWQANEND 250 Query: 311 AVEKEHKNGELGRFGPGLPKISDG------SMLFLMHL-ANKLELPPNGGGRAAIVLSSS 363 + K S S ++ + + + G A V ++ Sbjct: 251 NNKNRLYKTVDNWVRDTYAKDSKATNKNALSDPYVKAIKWASMRIKNE--GMVAFVTNNG 308 Query: 364 PLFNGRAGSGESEIRRWL 381 L N +R+ L Sbjct: 309 FLDNIAFEG----MRKHL 322 >gi|34763072|ref|ZP_00144045.1| Restriction enzyme BcgI alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887271|gb|EAA24369.1| Restriction enzyme BcgI alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 800 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 68/426 (15%), Positives = 121/426 (28%), Gaps = 70/426 (16%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 ++ + +T N I D E F F++ + + + Y + N Sbjct: 239 INRIMNTTLLTNYNESILKEWDAKDKSEEKF-FANGADTIL-SRVTYSLYNNIIKKYEKY 296 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +M Y + + + +TP + L + + Sbjct: 297 RDKGIDIMGTFYSLFLVYYA--SDKKKGIVLTPNHITSLFCDIAEYFRGKPIDKET---- 350 Query: 208 TLYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQELEPETHAVC 255 + D G+GGFL A+N++ + + K G E P + Sbjct: 351 IILDICTGSGGFLIAALNYIDKSIDEDDTLTESQKQNEKKKARKNCLIGVEQAPSMFMLA 410 Query: 256 VAGMLIRRLE---SDPRRDLSKNIQQGS-TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 A M L N+ G T +L F L K E + Sbjct: 411 YANMNFHGDGSSRLYNLNSLLSNVYDGEQTFGSELCKLYDFDGSLRK-KITKDIEGKIEK 469 Query: 312 VEKEHKNGELGRFGPGL----------------PKISDGSMLFLMHLANKLELPPNGGGR 355 +KE R + P + +L+ GG Sbjct: 470 NKKEEDKDYENRIRDLVIAELFKKNGADIGMINPPYGK-DFNEYDFINAELKYLKEGGIG 528 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-----TNIATYLWIL 410 AIV P+ N A + +I LLEN + A + +P LF ++ T + + Sbjct: 529 LAIV----PVSNQGASKDKDKI--ALLENHSLLASILMPLQLFTNICNSGASVGTCILVF 582 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 + K L + + + +D +I+ + E+ Sbjct: 583 KAHQPH----KYFLEDGGRTFLA---------DWREDGF-KIIAKHGRFEDK---NRWFT 625 Query: 471 RTFGYR 476 GYR Sbjct: 626 ANTGYR 631 >gi|33152056|ref|NP_873409.1| type I restriction enzyme M subunit [Haemophilus ducreyi 35000HP] gi|33148278|gb|AAP95798.1| possible type I restriction enzyme M subunit [Haemophilus ducreyi 35000HP] Length = 252 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 30/227 (13%) Query: 100 LESYIASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 LE Y+A +S +A + + + + + ++ L ++ F I + + + Sbjct: 34 LEFYLAIYSKHANEQLVKRYQTAVSHYTAKEKQQLSQL---FVIIINALEQKTYDFLGTV 90 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + L + TP + A+ L ++ + L +PTCG+G Sbjct: 91 FMAL-----DLSDGYKGQYFTPPHIAQAMAAMTLMDCHSIIE--KRGFMKLQEPTCGSGV 143 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + + NH+ H L Q+L+ T +C M + + + + + Sbjct: 144 MIIGSYNHLRQ--EHFNPQQQLWVRAQDLDFTTAMMCYIQMTLLHIPGEVIIGNTLTDEV 201 Query: 279 GSTLSKDLF-----------------TGKRFHYCLSNPPFGKKWEKD 308 L + ++NPPF WE + Sbjct: 202 CYHLYTPAHILGNGTMRLNNMTESEVEAQHNTDTVNNPPFEIDWETE 248 >gi|34581060|ref|ZP_00142540.1| hypothetical type I restriction enzyme M subunit [Rickettsia sibirica 246] gi|28262445|gb|EAA25949.1| hypothetical type I restriction enzyme M subunit [Rickettsia sibirica 246] Length = 131 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 20/143 (13%) Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PF + +K + +N F G+ ++G ++H L+ GGR A Sbjct: 1 MPFSQIITKKTSKNGKTITENHITSLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW-ILSNRKT 415 +V+ LF + +R++LL ++ +++LP F T + T + + K Sbjct: 56 LVVPEGFLFRKDT----AAVRQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFIDVHKP 111 Query: 416 EERRGKVQLINATDLWTSIRNEG 438 ++ + ++N G Sbjct: 112 NNQKEY--------WFYEVKNIG 126 >gi|325564132|gb|ADZ31420.1| M.SfcI [Enterococcus faecium] Length = 606 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 91/250 (36%), Gaps = 30/250 (12%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 TP+ + L+ S T+ DP CG G FL A ++++ Sbjct: 79 ENGIVFTPKYIADYIVDQTLNSI-----PSWSEEITILDPGCGGGIFLVSAAQYISEKFG 133 Query: 233 HH-KIPPILVPHGQELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDL---F 287 + +G ++E E C + ++ + DLS NI +L ++ F Sbjct: 134 VPLEKVIKHNIYGLDIESENVRRCRIVLDVLLEQSGSGKLDLSSNILCVDSLRENWGYLF 193 Query: 288 TGKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 ++ ++ + NPP+ ++ ++ E ++G F F+ N Sbjct: 194 GERKINFVIGNPPYVNAHDMSKETVKRLKNEFITTKVGTFNIF--------YAFVEKAMN 245 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNI 403 +L+ G+ ++ ++ L A ++R +L N + I+ ++ F Sbjct: 246 ELDYE----GQVGFIVPNNFLSITAAT----DLRHFLQSNKYLMKIIDFSDNMVFKPVRT 297 Query: 404 ATYLWILSNR 413 + LS + Sbjct: 298 YNCILQLSKK 307 >gi|310831505|ref|YP_003970148.1| putative type I restriction modification enzyme, M and S domains [Cafeteria roenbergensis virus BV-PW1] gi|309386689|gb|ADO67549.1| putative type I restriction modification enzyme, M and S domains [Cafeteria roenbergensis virus BV-PW1] Length = 977 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 74/203 (36%), Gaps = 21/203 (10%) Query: 114 IFEDFDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 IF + ++ + ++ L+ ++ + + + ++ IYE+ + R Sbjct: 168 IFSEIYENNKVNKMLVCEIPESATPYLIKELVFKVNNLIKKEQDMDFQLAGKIYEYFVGR 227 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 S + + T R + T + + + + G + T+ DP G+GGF ++ Sbjct: 228 DQSAI-SELGAYFTDRHI----TDYIYENIHSPILDDKGNVETMVDPFGGSGGFTLGYIS 282 Query: 226 HVADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 ++ + + L + ++ + + M S++++ ++ Sbjct: 283 YLKNKYQNINWTTDLSKIYHFDMNLDVVKYAMLEMY----CLTGEFPQSEHLRTINSFKD 338 Query: 285 D---LFTGKRFHYCLSNPPFGKK 304 D +F +NPP+G Sbjct: 339 DFKNQKGNMKFKNIFTNPPYGGD 361 Score = 38.0 bits (87), Expect = 5.7, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 16/130 (12%) Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 + GG A VL F S +R+ +EN +E +V++ F T+ Sbjct: 464 MMMDLLEEGGTAVGVLKEGIFF----DSKYKYLRQHCVENFKVEKVVSIDASQFENTSTK 519 Query: 405 TYLWILSN-RKTEERRGKVQLINATDLWT---------SIRNEGKKRRIINDDQRRQILD 454 T + SN KT++ +I D+ I K ++D + Sbjct: 520 TSIIKFSNTGKTDQIEFYDLIIEKDDITEVQEQEDGTFEIVKIKGKITRVHDKLVSK--A 577 Query: 455 IYVSRENGKF 464 Y ++ Sbjct: 578 TYQELVENEY 587 >gi|319897061|ref|YP_004135256.1| type i restriction-modification system methyltransferase [Haemophilus influenzae F3031] gi|317432565|emb|CBY80925.1| putative type I restriction-modification system methyltransferase [Haemophilus influenzae F3031] Length = 686 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 103/320 (32%), Gaps = 72/320 (22%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + G + + +TP V L L D+ ++D G Sbjct: 345 GKLFNEMYSWLGFSQDKLNDVVLTPSYVATLLAKLARVNKDS----------YVWDFATG 394 Query: 216 TGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L AMN + + G E+ + + + M++ Sbjct: 395 SAGLLVAAMNEMLIDAKNTITSPDELRQKEAHIKAHQLLGVEILSSVYMLAILNMILMG- 453 Query: 265 ESDPRRDLSKNIQQGSTLSK---DLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNG 319 D S N+ ++LS F K F + NPP+ K+ Sbjct: 454 ------DGSSNVLNKNSLSDFEGKGFEDKAFPADAFILNPPYSKEGNG------------ 495 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 M+F+ N + G AA+++ S G + E R Sbjct: 496 ----------------MIFVEKALNMVNK-----GYAAVIIQDSA---GTGKAKEINQR- 530 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 +L+ + A + +P D+F +++ T +++ + E + V+ I+ T+ + Sbjct: 531 -ILQKHSLIASIKMPADIFIGKSSVQTAIYVFKVGEKHEEKQLVKFIDFTNDGYKRSSRK 589 Query: 439 KKRRIINDDQRRQILDIYVS 458 K + N + Y Sbjct: 590 KAKASTNLRNVDHATERYQE 609 >gi|58616448|ref|YP_195577.1| Type I restriction enzyme (modification subunit) [Azoarcus sp. EbN1] gi|56315910|emb|CAI10553.1| Type I restriction enzyme (modification subunit) [Aromatoleum aromaticum EbN1] Length = 594 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 97/279 (34%), Gaps = 38/279 (13%) Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D + F +S PP G + + GRF S + Sbjct: 205 DGPRLRSFAKTVSFPPMGVRLPLETS------DRDLYGRFRERTTSSS---------VLA 249 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 + RA I+ +S LF A E +R+ L+ + +EA++ LP F T I+ Sbjct: 250 ARHVLAQTQRRAVILAPNSLLFGAGA---ERSLRQDLV-HGGLEAVIGLPPATLFGTAIS 305 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + +++ + +V ++ + + +GK R + R++L R G Sbjct: 306 LAVMVINLEQAATHV-EVLFVDGSAD-RFHKRDGKGRTTLT--GWRELLQAVNQRRTGDH 361 Query: 465 -----SRMLDYRTFG-----YRRIK----VLRPLRMSFILDKTGLARLEADITWRKLSPL 510 S++++ + Y R V LR S ++ L + R + Sbjct: 362 VTAVPSQVIEENDYQLMVSRYARSPMIDAVDEALRRSEVVPLEELVEFIRPVPAR-AAGS 420 Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 + ++ L+ + + YG+ + K L+ Sbjct: 421 AEELPVEALEVGVPDLPEYGYIRNPQKRVRLEALKNALR 459 >gi|159041629|ref|YP_001540881.1| hypothetical protein Cmaq_1062 [Caldivirga maquilingensis IC-167] gi|157920464|gb|ABW01891.1| conserved hypothetical protein [Caldivirga maquilingensis IC-167] Length = 1231 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 36/256 (14%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 + Y AF + E G FY + L + + N L + IF Sbjct: 242 IQTYYAFILKLLAAEVVYLYGGGRFYISYIADLDDAYTRGSVNALRDELRELESG--GIF 299 Query: 116 EDFDFSSTIA------RLEK-----AGLLYKICKNFSGIELHPDTVP----DRVMSNIYE 160 F + + + LE+ AG L ++ + S E + ++ +Y+ Sbjct: 300 RHFGYENFLEGDYFSWYLEELDGELAGALAEVIRRLSDYEPATPQLEPEYARDLLKRLYQ 359 Query: 161 HLIRRFGSEVSEGAEDFMTPR--------DVVHLATALLLDPDDALFKESPGMIRTLYDP 212 L+ R ++ ++ TP +V L+ + K P + DP Sbjct: 360 ELMPR---DIRHNLGEYYTPDWLADFLLDEVGLSLGNLMEMGKEDSLK--PLQQLRVLDP 414 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQELEPETHAVCVAGMLIRRLES 266 CG+G FL + + + + +LV + G +L P L+ + Sbjct: 415 ACGSGTFLVRYIARLRAYAREYFLEDVLVDYVLQNVVGYDLNPLAVLTARTNYLLMIADL 474 Query: 267 DPRRDLSKNIQQGSTL 282 + + I +L Sbjct: 475 PKKGTIEIPIYMADSL 490 >gi|284054608|ref|ZP_06384818.1| superfamily II DNA/RNA helicase [Arthrospira platensis str. Paraca] Length = 516 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 54/339 (15%), Positives = 95/339 (28%), Gaps = 54/339 (15%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---- 103 E + EK G +DL + F + L + N+ Sbjct: 156 WEKAAAEFGEKVRGLGEKLVDLIESERQTNPKF-IDAFEGFINLCRQSINPNISDAAVEE 214 Query: 104 --IASFSDN--AKAIFEDFDF----------SSTIARL-----EKAGLLYKICKNF---- 140 I + IF + DF I L +A L + F Sbjct: 215 MLIQHLLTERIFRQIFNNPDFTRRNIIAVEIEKVIETLTSKSFSRAHFLGDV-DYFYRAL 273 Query: 141 --SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDA 197 + + + ++ +YE + F +V++ TP+ +V + Sbjct: 274 EEAAATITEYSEKQHFLNTVYERFFQGFSLKVADTHGIVYTPQSIVDFMVKSVDEILRTE 333 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 K + DP GTG F+ M + HK H E+ + + Sbjct: 334 FNKSLSDKGVHILDPFVGTGNFIMRIMREIRKTALSHKYQQE--LHCNEVMLLPYYIASM 391 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPP 300 + L + + I T S DLFT + + NPP Sbjct: 392 NIEHEYLTATGQYQPFDGICLVDTFSVQESLQLDLFTPENTQRVKQQQSSPIFVVIGNPP 451 Query: 301 FGKKWEKDKDAVEKEH---KNGELGRFGPGLPKISDGSM 336 + + + D + + G R K S ++ Sbjct: 452 YNAWQQNENDNNKNRKYSQRGGVDKRVAETYAKDSKATL 490 >gi|312870427|ref|ZP_07730548.1| conserved domain protein [Lactobacillus oris PB013-T2-3] gi|311094044|gb|EFQ52367.1| conserved domain protein [Lactobacillus oris PB013-T2-3] Length = 334 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 113/342 (33%), Gaps = 47/342 (13%) Query: 86 YSLSTLGSTNTRNNLES-YIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGI 143 + L G+ + L S Y+ + +NA+ + + + + L K+ + Sbjct: 9 FELFDQGTEILQAALRSSYLDAMLENAENVIDGRVAVEDGVPDKKTVEQLEKLYQEMHLK 68 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + +T+ +V+ + +IR+ + + TP + L L+ Sbjct: 69 DASAETI-RQVLQLSFLKVIRKDAIQANHQM----TPDTIGFLMAFLI------EKISKL 117 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 T++DP GTG LT +N + + + +G + +P V A + ++ Sbjct: 118 DRPSTIFDPAVGTGNLLTTIINQLQQASAEP-----IHGYGIDNDPAMLEVASASVALQG 172 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 L+ D + N L + P + + K +K H Sbjct: 173 LDVDLFHQDAIN-----ALDIPECDLAVADLPIGYYPLDQNTKNYKTRAQKGHSYVHH-- 225 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 L + N L G + L S LF +W+ Sbjct: 226 -------------LLIEQAMNYLRP-----GGFGVFLVPSNLF---QTKEAQPFIQWMHS 264 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL 424 ++ ++ LP +LF N + +L + ++ KV L Sbjct: 265 VGYLQGLINLPAELFANQNAQKAILLLQRHGGKSKQAVKVLL 306 >gi|312875573|ref|ZP_07735574.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF 2053A-b] gi|311088827|gb|EFQ47270.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF 2053A-b] Length = 417 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 EK L I + I D + YE+LI + S + +F TP+ V L Sbjct: 14 EKNKRLADILTGIAEINFGEFQKNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKL 73 Query: 187 ATALLLDPDDALFKESPGMIRT 208 +++D ++ K T Sbjct: 74 LARIVMDGKTSINKAYDPPYNT 95 >gi|227529725|ref|ZP_03959774.1| DNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350391|gb|EEJ40682.1| DNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 311 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 54/348 (15%), Positives = 112/348 (32%), Gaps = 51/348 (14%) Query: 102 SYIASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 SY+ + +NA+ I +D + E L KI + + + + +++ + Sbjct: 10 SYLDAMLENAENIIDDNTVRVEDGVPDKETQEKLEKIYQQLDLKNVKAEAI-RQLIQLSF 68 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 +IR+ + + TP + L L+ + T++DP GT Sbjct: 69 LKVIRKDAIQANHQM----TPDTIGLLMAFLI------EKVTQNTKLETIFDPAVGTANL 118 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 LT +N + + G + + +V + ++ D + Sbjct: 119 LTTVINQL-----DKDEHDNIKGFGIDNDDSMLSVASVNVALQYANVDLFHQDAVG---- 169 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + +S+ P G ++ R G S L + Sbjct: 170 ------ALDIPQCDLAVSDLPIGY-------YPLDDNTKDYQTRAKKGH---SYIHHLLI 213 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 N L+ G + L S LF + G +W+ ++ V LP++LF Sbjct: 214 EQSMNYLKP-----GSFGVFLVPSSLFQTKETEG---FVKWIHSVAYLQGFVNLPSELFA 265 Query: 400 RTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIIND 446 + +L ++ KV L + S +++ R + + Sbjct: 266 NPAAQKSILLLQRHGGNGKQAAKVLL----GEFPSFKDQKNFARFMQE 309 >gi|254167200|ref|ZP_04874053.1| Type I restriction enzyme R protein N terminal domain protein [Aciduliprofundum boonei T469] gi|197624056|gb|EDY36618.1| Type I restriction enzyme R protein N terminal domain protein [Aciduliprofundum boonei T469] Length = 995 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 63/477 (13%), Positives = 123/477 (25%), Gaps = 136/477 (28%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 LR E + E + + YN+ + T Sbjct: 236 IFLRMCEDRGVERYGRLLEAAEEDVYAALLKLYQEADKK---YNSGLFHFKPEKGRATEP 292 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMS 156 + I + + +L +I K + + ++ Sbjct: 293 D-------------DITPNIKI--------DSKVLKRIIKGLYYPESPYEFSVISPEILG 331 Query: 157 NIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 +YE + + EV + + TP+ +V + Sbjct: 332 QVYEQFLGKVIRLTKGHRAKVEEKPEVKKAGGVYYTPQYIVDYIVENTVGKLCKGKTPKE 391 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG-----------------------------SHH 234 + DP CG+G FL A + + Sbjct: 392 MEKIKILDPACGSGSFLLGAYTRLLEEHLRYYTSAKNKKRYRDRIYQDKNGEWRLTIREK 451 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQG 279 K + +G +++ + V +L++ LE + + DL NI+ G Sbjct: 452 KRILLNSIYGVDIDEQAVEVTKLSLLLKVLEGENKDALERQQKLWRERALPDLGNNIKCG 511 Query: 280 STL--------------------------SKDLFT----GKRFHYCLSNPPF-GKKWEKD 308 ++L + F F + NPP+ ++ Sbjct: 512 NSLVGTDYYASGVQMTLFDEEGERINAFDWEKEFPEVMKNGGFDVIIGNPPYVRQEMLGK 571 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 KEH G +D + F+ L+ G A Sbjct: 572 LKNYFKEHYEVYHG--------TADLYVYFIERSMKLLKPNGIYGIIVA--------NKW 615 Query: 369 RAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 + +R WL + ++E I+ LP +F + + I+ K + V Sbjct: 616 MRANYGKPLREWLKKWQIVE-ILDFGDLP--VFKKATTYPCIMIVKASKPRKYFWAV 669 >gi|327405008|ref|YP_004345846.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] gi|327320516|gb|AEA45008.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] Length = 608 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 56/340 (16%), Positives = 104/340 (30%), Gaps = 54/340 (15%) Query: 97 RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLL-----------YKICKNFS 141 L++Y+ S+S + K I +F ++ K LL +K+ + FS Sbjct: 2 NKELQTYLKSYSYDPIKVNKLIVSNF-LNANSKDKVKGKLLSSLRIKKNSPDFKLVEEFS 60 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 I +E +I + + TP + L + L Sbjct: 61 RIHTLRSIEDLIE---AFEFVI---SPQEKIVSGAVYTPESIRDYIITSTLSNTNDLT-- 112 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-PILVPHGQELEPETHAVCVAGML 260 L DP CG GFL A ++ G +++ + + Sbjct: 113 ----GVNLCDPACGCAGFLYTAAKYLKQQTGRTYKQIYRDNIFGLDIQEYSIERSKILLS 168 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPF--GKKWEKDKDAVEK 314 + L D N+ G+ LS + + FH NPP+ + + + + + Sbjct: 169 LAALLEGEDVDFDFNLFTGNALSFNWNEEITGFEGFHVIAGNPPYVCSRNIDDESKDLLQ 228 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + G +P F L GG + +S + Sbjct: 229 NWQVCSTGHPDLYIP--------FFELGMTYLRP----GGILGYITMNSFFKSINGR--- 273 Query: 375 SEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNR 413 +R +L + D I+ +F + T + + NR Sbjct: 274 -AVREYLAQFDN--TIIDFGGYQVFNSKSTYTCICFIQNR 310 >gi|325849557|ref|ZP_08170795.1| hypothetical protein HMPREF9246_0101 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480038|gb|EGC83115.1| hypothetical protein HMPREF9246_0101 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 152 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 11/137 (8%) Query: 62 FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-------FSDNAKAI 114 G + + +A F+ E + S T + I + I Sbjct: 2 EDGEDYAEDRDEYLAKNIFFVPKEARWEYVASNATIPEIGQLIDQTMISIEEENPKLNGI 61 Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + ++ F ++L ++ +E+ I +F S A Sbjct: 62 LPKNYARPELDK----RRPGEVVVLFDNLKLKDHGSSKDILGRAHEYAIAKFASLEGRNA 117 Query: 175 EDFMTPRDVVHLATALL 191 +F TP +V +L Sbjct: 118 GEFYTPTSIVRTIVEIL 134 >gi|107024431|ref|YP_622758.1| N-6 DNA methylase [Burkholderia cenocepacia AU 1054] gi|105894620|gb|ABF77785.1| N-6 DNA methylase [Burkholderia cenocepacia AU 1054] Length = 578 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 70/234 (29%), Gaps = 33/234 (14%) Query: 167 GSEVSEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 G E + F TP + L L D +R DP CG FL Sbjct: 91 GEERRKQLAMFFTPPSLTKRLLDDLSASGVDFS-------VRKFCDPACGGAAFLAPIAM 143 Query: 226 HVADCGSHHKIPPILVPHGQELE----PETHAVCVAG-----MLIRRLESDPRRDLSKNI 276 + D + + + A+C M++ I Sbjct: 144 RMRDALRERGTSATQILDHVQRHLLGFDKDAALCEMSKHFLLMVLHDEVVATGARPKFQI 203 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 QG +L + + NPPF K + + F + + Sbjct: 204 HQGDSLIRAQSLLGALDVVVCNPPFRKMPSAEVAHYLEH--------FADIIEAQPNLYA 255 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 LF+ L GG A+V +S L +G S++R +LL + +I Sbjct: 256 LFMALCVKLLAP----GGACALVTPTSFL----SGQYFSKLRTFLLTQANVLSI 301 >gi|327413038|emb|CAX68066.1| conserved hypothetical protein [Salmonella enterica subsp. VII] Length = 644 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 50/135 (37%), Gaps = 14/135 (10%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 + LL ++ + + P + I+ +L + + TP +V + + Sbjct: 483 SRLLAEVIE-------GLEFCPTDFLGQIFMNL-----ELGNTRHGQYFTPYNVCYTMSR 530 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + L ++ T+ DP CG GG + + + G + ++ + +++P Sbjct: 531 MTLSDRLSVLTSGERDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYCVDIDP 588 Query: 250 ETHAVCVAGMLIRRL 264 +C + + + Sbjct: 589 VAAMMCYIQLSLMGI 603 >gi|227500925|ref|ZP_03930974.1| site-specific DNA-methyltransferase (adenine-specific) [Anaerococcus tetradius ATCC 35098] gi|227216944|gb|EEI82333.1| site-specific DNA-methyltransferase (adenine-specific) [Anaerococcus tetradius ATCC 35098] Length = 231 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 54/188 (28%), Gaps = 15/188 (7%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ + + E + Y + ++ S + L + Sbjct: 34 MLFLK-VYDSKEEDWEIDEDNYESIIPRKYRWSNWAHDDK-SGSALTGDGLLDFVNNGLF 91 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 L++ + F ++ LL ++ I+ D + Sbjct: 92 PTLKNLPVDKNTPINKAIVKTTFEDANNYMKDGVLLRQVINIIDEIDFS-DYEESHAFGD 150 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 IYE +++ + + + +F TPR V ++ P + + D CG Sbjct: 151 IYESILKEL--QSAGSSGEFYTPRAVTDFMAMMI----------KPQIGEKMADFACGFR 198 Query: 218 GFLTDAMN 225 + N Sbjct: 199 VIIVIEAN 206 >gi|119486016|ref|ZP_01620078.1| hypothetical protein L8106_05830 [Lyngbya sp. PCC 8106] gi|119456791|gb|EAW37919.1| hypothetical protein L8106_05830 [Lyngbya sp. PCC 8106] Length = 759 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 65/218 (29%), Gaps = 28/218 (12%) Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA---TALLLDPDDAL 198 + + + +YE+ + + + ++ TP ++V L L+ Sbjct: 6 SENIANHHEKQKFLKAVYENFYKAYNPKAADRLGIVYTPNEIVRLMIESADYLVHKHFGK 65 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 PG+ + DP GTG ++T+ + ++ HK H E+ + + Sbjct: 66 LLSDPGV--EILDPCTGTGTYVTELIEYLPADKLEHKYK--HEIHCNEVAILPYYIANLN 121 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------------YCLS 297 + + + + +NI TL F GK+ + + Sbjct: 122 IEFTYQQKMGKYEEFQNICLVDTLDHCGFAGKQLNLFAMSVQNTARIKEQNSRTISVIIG 181 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 NPP+ + R K Sbjct: 182 NPPYNAWQADFRQDNPNRQYKDVDRRIKATYIKKGTAQ 219 >gi|400288|sp|Q03055|MTV1_VIBS3 RecName: Full=Modification methylase VspI; Short=M.VspI; AltName: Full=Adenine-specific methyltransferase VspI gi|48457|emb|CAA48625.1| methylase [Vibrio sp.] Length = 408 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 36/217 (16%) Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + + V +S+IYE + F TP+++ L Sbjct: 83 LEEMIHNIIRSNEVHPEGLSDIYEESL---SESYKNKEGVFYTPKEIAADFFDYLPKDCS 139 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 L T DP CGTG FL +A+ + +G +++ + Sbjct: 140 EL---------TFCDPCCGTGNFLIEAVK---------RGFKPCNIYGYDIDEVALEISR 181 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 + + + NI++ LS +++ +NPP+GKK K + Sbjct: 182 SRL------KELCGVAESNIEKRDFLSASYQIEQKYDVIFTNPPWGKKLPKKDKDSLAD- 234 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 D S +F L G Sbjct: 235 --------SLATGNSKDTSAIFFFASMKILNSSGYLG 263 >gi|1709162|sp|P50190|MTM1_MICAM RecName: Full=Modification methylase MamI; Short=M.MamI; AltName: Full=Adenine-specific methyltransferase MamI gi|984668|emb|CAA55646.1| methyltransferase [Microbacterium ammoniaphilum] Length = 362 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 13/202 (6%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 RL + +L + I L T + ++ + G ++TP V Sbjct: 144 RLAEPTVLQSALALVNEI-LGGGTRVADPLGTAFDAFLSGRYDHSG-GLGTYLTPSSVAR 201 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 + ++LD + + DP CGTG FL A + + + + +L Sbjct: 202 MMAEVVLDLLSSDALADVRAPI-IADPFCGTGRFLVAAFDAAEERHENVDLAGLLDGGLV 260 Query: 246 ELEPETHAVCVA--GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPF 301 + T A+ + +L+ + +++ R L+NPPF Sbjct: 261 GADQSTTAIAKSGLNLLLYG------AQQPEVYAVADSMTDPGLDRLRGTLAAVLTNPPF 314 Query: 302 GKKWEKDKDAVEKEHKNGELGR 323 G D +++ + R Sbjct: 315 GGGKYDDALGIDRTRELFPSVR 336 >gi|325282540|ref|YP_004255081.1| adenine specific DNA methyltransferase [Deinococcus proteolyticus MRP] gi|324314349|gb|ADY25464.1| adenine specific DNA methyltransferase [Deinococcus proteolyticus MRP] Length = 891 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 84/282 (29%), Gaps = 49/282 (17%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG--- 204 + YE + + E+ + + TP DVV + S G Sbjct: 323 SRFQGDAVQYFYEPFLAAYDPELRKQFGVWYTPADVVEYMVERVDQSLREDLGLSLGLAD 382 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC-----------GSHHKIPPILVPHGQELEPETHA 253 + DP GTG +LT A+ + K G E+ P + Sbjct: 383 PSVYVLDPATGTGSYLTAALGRIERTLRAQPDWDDASADELKKAATQRLFGFEIMPAPYV 442 Query: 254 VCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFT----------------------G 289 + M + R + I + L+ + Sbjct: 443 IAHMRMGQRLARSGAALEGQERAAIYLTNALTN-WHSAPPRLDMPELQAEQDAAQHVKQN 501 Query: 290 KRFHYCLSNPPFGK---KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + L NPP+ + ++ + E+K G + + G+ K + + + Sbjct: 502 QPILVILGNPPYSAFVGTSQDEEGGLIDEYKQGLVSEW--GIKKFNLDDLYVRFFRVAER 559 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLI 387 ++ G G + S L + +RR LL E DL+ Sbjct: 560 KIGQTGRGIVCFISPYSYL----SDPSFVVMRRKLLGEFDLL 597 >gi|313667087|gb|ADR72986.1| M1.BsmFI [Geobacillus stearothermophilus] Length = 560 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 43/252 (17%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--- 224 + TP+ V L +L + RT+ DP G G FL Sbjct: 16 ENKKDMLGQVFTPQGVADLMVSLGM----------NTKPRTILDPCFGEGVFLESIQKRK 65 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +V + + V + + + ++ + + Sbjct: 66 EYVGNHTKIIGVEIDPVLYERVQRKFP------NFELYNMDFFDFQGV------------ 107 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + NPP+ ++ + +K+ + R IS S L++ L Sbjct: 108 -------VDCVIMNPPYIRQELLREKMPRFLNKSDIMARLPLLQYPISSRSNLYVYFLIK 160 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 + G AI+ + A + +++LL+N I+AI+ D+F ++ Sbjct: 161 AWSILSEKGSIIAIIPN-----TWMAAEYGNSFKKFLLQNFWIKAIIQFNKDVFPDADVE 215 Query: 405 TYLWILSNRKTE 416 + + LS K Sbjct: 216 SCILYLSKEKDA 227 >gi|50119547|ref|YP_048714.1| hypothetical protein ECA0597 [Pectobacterium atrosepticum SCRI1043] gi|49610073|emb|CAG73513.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 653 Score = 61.9 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 68/251 (27%), Gaps = 33/251 (13%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGST-----NTRNN 99 + V GG D + + N + N Sbjct: 387 FAKSVDEVAANDEEEGGDPDDPGNLAALPWVRNQGRSNPHRATFIRQFQEIAPYENRWTV 446 Query: 100 LESYIASFSDN-------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 +I + + I +D+ + + F+ + + Sbjct: 447 FSDFIHMSAAALHNRCHFVQEIEDDYLRRIKRYKKADQNRFPLL---FNTLVEGMEFSAS 503 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L + + TP V ++ L L T+ DP Sbjct: 504 DFLGSVFMEL-----ELGDQRRGQYFTPYSVGYMMAKLQLADGLPALTSGERDFITVSDP 558 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG GG + + + G + ++ +++P + + + + + Sbjct: 559 ACGAGGLIVAMAQAMLEAGFN--PQKQMMAVCVDIDPVAAMMAYVQLALCGIPAM----- 611 Query: 273 SKNIQQGSTLS 283 + G++LS Sbjct: 612 ---VIVGNSLS 619 >gi|87310600|ref|ZP_01092729.1| adenine specific DNA methyltransferase [Blastopirellula marina DSM 3645] gi|87286821|gb|EAQ78726.1| adenine specific DNA methyltransferase [Blastopirellula marina DSM 3645] Length = 744 Score = 61.9 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 84/263 (31%), Gaps = 33/263 (12%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP------------DDALFKESPGMI 206 +E + + + + TP V + DD+ K + + Sbjct: 14 FESRLAKSDDSLRRRHGVYYTPPVVAAAMIQAVDHGLKSQLGLPLGLADDSRRKGTDVPL 73 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCV 256 ++ DP CG G FL A+ + P G EL PE A Sbjct: 74 VSILDPACGDGVFLEAAVRQIYQNYRSAGNEPSWPSAVHCTVLPRLFGCELFPEAAADAK 133 Query: 257 AGMLIRRLESDPRRDLSK--NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVE 313 ++ E+ ++ I+ G L++ + + F + NPP+ + ++ Sbjct: 134 QRLIETLAETGVTDVTAEEIQIRIGDALAESTWSADEHFSVIVGNPPYSAAAALHGEWIK 193 Query: 314 KEHK-NGELGRFGP---GLPKISDGSML---FLMHL-ANKLELPPNGGGRAAIVLSSSPL 365 +G+ R G P L ++ + L +G G A + + L Sbjct: 194 SLMTGSGDPSRNYYQVAGEPLREKKLWLHDDYVQFFRLAQRHLDRSGVGILAFLTNHGYL 253 Query: 366 FNGRAGSGESEIRRWLLENDLIE 388 N E+ R + L++ Sbjct: 254 DNPTFRGMRWELLRGFDQIHLVD 276 >gi|57505847|ref|ZP_00371772.1| type IIS restriction enzyme [Campylobacter upsaliensis RM3195] gi|57015877|gb|EAL52666.1| type IIS restriction enzyme [Campylobacter upsaliensis RM3195] Length = 1096 Score = 61.9 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 76/314 (24%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + ++ + + +E + +TPR VV + +L D+ Sbjct: 336 KLQTADIAGRLFNSITKWLEVPDNEKNDVVLTPRYVVDMMVSLTGVNKDSF--------- 386 Query: 208 TLYDPTCGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257 ++D G+G FL AMN + + + G E + + + + Sbjct: 387 -VWDYATGSGAFLISAMNAMIKDAQNLQSPKEIEAKIAHIKAYQLLGIEKRSDIYLLGIL 445 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK---------DLFTGKRFHYCLSNPPFGKKWEKD 308 M++ D S N+ +L L NPP+ + Sbjct: 446 NMIL-------LDDGSANLLHKDSLKDFNGSYEQGDKKGQSFPADVFLLNPPYSASGKG- 497 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 +F+ K+ GRA +++ + Sbjct: 498 ---------------------------FIFVERALRKMSK-----GRACVIIQENAGSGN 525 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN- 426 +L++ + A + +P+DLF +++ T +++ K + V+ I+ Sbjct: 526 GLPYTAD-----ILKHSTLLASIKMPSDLFAGKSSVQTAIYVFEVGKAHNVKQMVKFIDF 580 Query: 427 ATDLWTSIRNEGKK 440 ++D +T + K Sbjct: 581 SSDGYTRAARKKAK 594 >gi|77917738|ref|YP_355553.1| putative DNA methylase [Pelobacter carbinolicus DSM 2380] gi|77543821|gb|ABA87383.1| putative DNA methylase [Pelobacter carbinolicus DSM 2380] Length = 1022 Score = 61.9 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 89/328 (27%), Gaps = 57/328 (17%) Query: 125 ARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI----RRFGSEVSEGAEDFM 178 L +A + + I LI F S+ + + Sbjct: 248 ETLPEAAINRINDFLSRVDLETGQESFW-NYDFRYIPVELISGIYESFLSDEKKEVGAYY 306 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TPR + L L + +YD CG+G LT A + + P Sbjct: 307 TPRHLASLVVDQALAHSKNILS------ERIYDGACGSGILLTTAYRRLLAYAEALRGHP 360 Query: 239 ----------ILVPHGQELEPETHAVCVAGMLIRRL---------------ESDPRRDLS 273 + G ++ V + + L + + Sbjct: 361 LSFEERCQLLVEHIFGSDISEPACRVTAFSLYLSLLERLQPADIEELRENSDVKLPDLNT 420 Query: 274 KNIQQGS---TLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 N++ G D K F LSNPP+ + + + + K+ G Sbjct: 421 HNLRSGKEKGNFFSDQNTFAASKSFTIFLSNPPWVEPKKNETLPSDLWAKSK-----GVN 475 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLENDL 386 +P+ + F++ + + + +P N S R L+ Sbjct: 476 IPRRQTAN-AFMLRALDSVSPSGKICLILPVSSFGAPTSNTFIAKWLSHYRLETLINFGD 534 Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRK 414 + I LF + + S RK Sbjct: 535 LRKI------LFSTAKQPCVVAVFSPRK 556 >gi|115523500|ref|YP_780411.1| superfamily II DNA/RNA helicase [Rhodopseudomonas palustris BisA53] gi|115517447|gb|ABJ05431.1| DNA or RNA helicase of superfamily II [Rhodopseudomonas palustris BisA53] Length = 1066 Score = 61.9 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 102/364 (28%), Gaps = 58/364 (15%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYI---ASFSD 109 V A + + A F ++ +++ + + + R L +I FS Sbjct: 198 EVLAALRAMIDTAQKDNGPFRKAASKFLKHAQETINPMVTADDVREMLIQHILTEEIFSK 257 Query: 110 NAKAIFEDFDFSST------IARLE--------KAGLLYKICKNFSGIELHPDTVPDRV- 154 +F++ DF + LE K + + ++ I + VP+ Sbjct: 258 ----VFDEDDFHRQNNVAKELYTLENLFFTGAVKKNTMRALDTYYNAIRKNAHEVPNHTE 313 Query: 155 ----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTL 209 + IYE + + + ++ TP ++V F ++ + Sbjct: 314 KQRFLKMIYEGFYKVYNKKAADRLGVVYTPNEIVRFMVESADWLCQKHFGKNLIDRDVQI 373 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 DP GTG F+ + + H H E+ + V + + Sbjct: 374 LDPATGTGTFICELLEHFRGQKDKLAHKYKEELHANEVAILPYYVANLNIEATYAAITGQ 433 Query: 270 RDLSKNIQQGSTLSK------------DLF--------------TGKRFHYCLSNPPFGK 303 N+ TL DLF ++ + NPP+ Sbjct: 434 YAEFPNLCFVDTLDNVGGLGIRAGHQHDLFGAMSEENVARIKRQNTRKISVVIGNPPYNA 493 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGS----MLFLMHLANKLELPPNGGGRAAIV 359 + + D + R K+S + G A + Sbjct: 494 NQQNENDNNKNRTYPRIDERIKDTYIKLSTAQKTKAYDMYTRFFRWASDRLHDDGILAFI 553 Query: 360 LSSS 363 + S Sbjct: 554 TNRS 557 >gi|162958010|ref|YP_001621442.1| RemS [Serratia entomophila] gi|155382597|gb|ABU23792.1| RemS [Serratia entomophila] Length = 256 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 9/142 (6%) Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I + +A L ++ + F + + D ++ I+ L FG+ F TP + Sbjct: 76 QICKRYEAVDLQRMQELFCFLIGAMEGEMDDLLGGIFMEL--EFGTSS---MGQFFTPSE 130 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 V L AL L + P + +L +PT G+GG + A H+ + +L Sbjct: 131 VSRLIAALTLGDHVKELEYRPFI--SLDEPTSGSGGMVIAAAEHL--LSKGYNPQQVLYI 186 Query: 243 HGQELEPETHAVCVAGMLIRRL 264 +++P +C + + L Sbjct: 187 RCTDIDPLAADMCFIQLALLGL 208 >gi|288559582|ref|YP_003423068.1| type II restriction enzyme, methylase subunit [Methanobrevibacter ruminantium M1] gi|288542292|gb|ADC46176.1| type II restriction enzyme, methylase subunit [Methanobrevibacter ruminantium M1] Length = 1054 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 66/414 (15%), Positives = 121/414 (29%), Gaps = 97/414 (23%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKN--FS 141 L + R+ +E + N K DF + K L I N Sbjct: 312 DDLSNLKIRDEIEDRSFFENWNLKE-----DFEDKYEDIAKLIGVYKDTLNPIFINLLII 366 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRF------GSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + ++ +I+E+ I E + + TP + + P Sbjct: 367 STYDFDSELDVNILGHIFENSISDIEELKNDNQEQRKKDGVYYTPEYITDYICRNTIIPY 426 Query: 196 DALFKESPGMIR---------------------TLYDPTCGTGGFLTDAMNHVADCGS-- 232 ++ ++ + + DP CG+G L +++ + + Sbjct: 427 LSISGKASTVHELLYEYESSNSLDVLDSKLTNIKVLDPACGSGSMLNKSVDILFEIHEAL 486 Query: 233 -------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRL------ESD 267 K +G +L E+ + + ++ E Sbjct: 487 HASKYAGDSSLDRFFDSLEKRKEIISNNIYGVDLNEESVEITKLSLFLKLATTVGLKEGF 546 Query: 268 PRRDLSKNIQQGSTLSKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKD 310 L K+I+ G +L D F F + NPP+ E D+ Sbjct: 547 QLPSLDKHIKCGDSLVDDESIAGNKAFNWYESFSEVFESGGFDIIVGNPPYVDIKEMDEK 606 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + N E L F+ L+ G + ++ +S LFN Sbjct: 607 TAKYIFDNYETSFNRINLYST------FVEKSYYLLKNE----GIFSFIMPNSILFN--- 653 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 S S+IR +L N I IV D+F + + I E + K+ + Sbjct: 654 -STYSKIRELILNNTSILNIVRTSDDVFKDAKVEPIILIFKKGYDEGNKTKILI 706 >gi|237718472|ref|ZP_04548953.1| hypothetical protein BSCG_04899 [Bacteroides sp. 2_2_4] gi|229452179|gb|EEO57970.1| hypothetical protein BSCG_04899 [Bacteroides sp. 2_2_4] Length = 970 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 81/250 (32%), Gaps = 46/250 (18%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 S + F TP +V+ + L + SPG DP+ GTG F++ Sbjct: 95 ASVKASTFTAFYTPPTIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRPQ 146 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + PE A +L R+ + + NI+ L Sbjct: 147 CHSASGNI--------------PEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PP 189 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 F SN PFG D + NG RF S + F K Sbjct: 190 HRNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKG 235 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNI 403 GG A + S + + A +R++L+ + + V LP +LF T + Sbjct: 236 LDAVREGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEV 291 Query: 404 ATYLWILSNR 413 + L IL Sbjct: 292 GSDLIILQKD 301 >gi|119493868|ref|ZP_01624433.1| hypothetical protein L8106_09086 [Lyngbya sp. PCC 8106] gi|119452380|gb|EAW33571.1| hypothetical protein L8106_09086 [Lyngbya sp. PCC 8106] Length = 425 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 79/284 (27%), Gaps = 34/284 (11%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L Y + + D ++ IYE + F +V++ TP+ +V+ Sbjct: 97 LSTLDRFYGAIEETAATIDDYSKKQDF-LNTIYEKFFQGFSVKVADTHGIVYTPQPIVNF 155 Query: 187 ATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHG 244 + D F K + DP GTG FL M + + H Sbjct: 156 MVKSVEDILQREFGKSLVDKGVHILDPFVGTGNFLIRVMREIVEIQKSALPYKYEQELHC 215 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH----- 293 E+ + + + E + I T DLF+ + Sbjct: 216 NEVMLLPYYIAAMNIEHEYFEQTGEYKSFEGICLVDTFEDQAVQQLDLFSPENMKRVQKQ 275 Query: 294 ------YCLSNPPFGKKWEKDKDAVEKE-----HKNGELGRFGPGLPKISDGSM-----L 337 L NPP+ + D + K G K S + Sbjct: 276 RNSNLFVILGNPPYNVGQLNENDNNKNRKYTNKDKTGIDDIVSATYAKASKATNKNALSD 335 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPL----FNGRAGSGESEI 377 + + G A V ++S + F+G E E Sbjct: 336 PYVKAIRWASDRISDEGIIAFVTNNSFIDQIAFDGMRQQLEKEF 379 >gi|317014886|gb|ADU82322.1| putative type II DNA modification enzyme (methyltransferase) [Helicobacter pylori Gambia94/24] Length = 678 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 107/302 (35%), Gaps = 71/302 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + R G + + +TP V L L D+ ++D G Sbjct: 344 GKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L +MN + + G E+ P+ H + V M++ Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG- 452 Query: 265 ESDPRRDLSKNIQQGSTLS-KDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I +LS D + + + NPP+ ++ Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDKEFKANAFVLNPPYSERGNG------------- 493 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M+F+ K++ G A++++ SS G + E +R Sbjct: 494 ---------------MVFVEQALEKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE + A + +P DLF +++ T++++ + + + +V+ IN ++ + N K Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588 Query: 440 KR 441 + Sbjct: 589 AK 590 >gi|15612430|ref|NP_224083.1| putative type II DNA modification enzyme (methyltransferase) [Helicobacter pylori J99] gi|4155977|gb|AAD06940.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter pylori J99] Length = 678 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 105/302 (34%), Gaps = 71/302 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + R G + + +TP V L L D+ ++D G Sbjct: 344 GKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L +MN + + G E+ P+ H + V M++ Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG- 452 Query: 265 ESDPRRDLSKNIQQGSTLS-KDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I +LS D + + + NPP+ Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDKEFKANAFVLNPPYSAPGNG------------- 493 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M+F+ K++ G A++++ SS G + E +R Sbjct: 494 ---------------MVFVEQALEKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE + A + +P DLF +++ T++++ + + + +V+ IN ++ + N K Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588 Query: 440 KR 441 + Sbjct: 589 AK 590 >gi|309809675|ref|ZP_07703531.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|308170035|gb|EFO72072.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] Length = 172 Score = 61.5 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 20/161 (12%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------ 49 T+ L IW A++L G DF +L R + L Sbjct: 4 TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLTNYINHGEIEAGN 63 Query: 50 ---PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESY 103 E+ ++ + F + F N S + + + LES Sbjct: 64 TDFDFAQMSDEEAEEAREGLVEEKGFFILPSELFVNIKKKSNEDMEWAKA-HLNEKLESV 122 Query: 104 IASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKNFSGI 143 ++++ + DF+ A + + L + Sbjct: 123 FRHIEESSQGSEAEGDFAGLFADFDVNSNKLGATVAKKNEK 163 >gi|118442884|ref|YP_877876.1| type IIS restriction enzyme R and M protein [Clostridium novyi NT] gi|118133340|gb|ABK60384.1| type IIS restriction enzyme R and M protein, putative [Clostridium novyi NT] Length = 590 Score = 61.5 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 88/326 (26%), Gaps = 59/326 (18%) Query: 127 LEKAGLLYKIC----KNFSGIELHPDTVPDRVMSN--IYEHLIRRFGSEVSEGAEDFMTP 180 L K LY I + + E I + + TP Sbjct: 6 LNKVNELYNIINAPIDRIFKTMAIENYKKTLNLGKEKFSEIYISLKEKDKKKEKGVVYTP 65 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------ 234 +++ +L +D + + DP+CG G L + + + Sbjct: 66 KEISAYMLENVLSKEDVV----KNPYIKILDPSCGCGDILIVCYEKLKEIYIENLKSINE 121 Query: 235 ------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 K G +++ + + +N++ L Sbjct: 122 VNNINLNEEDIPKHIIKNNLFGFDIDEVALKILAIDLF-----QISGYFCDENLRCMDFL 176 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 +F L NPP+ V+KE+ F D S F Sbjct: 177 LNKC--DCKFDIILGNPPY-----VGHKCVDKEYSKKLKSSFKEVYKDKGDISYCFFQQA 229 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--- 399 N L + SP SGE E+R+ L + + IV F+ Sbjct: 230 INNLIKEGKLSFITSRYFMESP-------SGE-ELRKVLKDVCSLYTIVD-----FYGIR 276 Query: 400 ---RTNIATYLWILSNRKTEERRGKV 422 + + L N++ + KV Sbjct: 277 PFKNAGVDPVIIFLINKQDAKEEIKV 302 >gi|323519972|gb|ADX94351.1| hypothetical protein ABTW07_2p058 [Acinetobacter baumannii TCDC-AB0715] Length = 258 Score = 61.5 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 23/181 (12%) Query: 103 YIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 Y F+ N + + + RL+ L Y + P V+ +IY Sbjct: 54 YQNLFNQNIENEYLQRINRYDVSGRLKIKNLFYLLVDL-----CEAKGEPYDVLGSIYME 108 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L ++ + TP +V +L +++ + + ++ DP CG G L Sbjct: 109 L-----EIGNDHIGQYFTPSEVSNLCAQVVITDLKKQLE--EEGVISISDPACGAGSTLL 161 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + S ++ L +++ +C + + + I G T Sbjct: 162 STVKLCLE--SKIQVQDHLYIEAADIDRNVALMCYIQLSL--------WAVPCRIFVGDT 211 Query: 282 L 282 L Sbjct: 212 L 212 >gi|189459440|ref|ZP_03008225.1| hypothetical protein BACCOP_00063 [Bacteroides coprocola DSM 17136] gi|189433897|gb|EDV02882.1| hypothetical protein BACCOP_00063 [Bacteroides coprocola DSM 17136] Length = 607 Score = 61.5 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 79/281 (28%), Gaps = 34/281 (12%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 TP+ + ++ + P D +CG G FL ++ Sbjct: 77 DAEKTANGAVYTPKYIRDYIVRQVMHSVE-----KPLAECLCADISCGCGAFLYTLAEYI 131 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCV-AGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + +G ++ L+ + ++ N+ G +L+ D Sbjct: 132 HEHTGEQYSNIFAHLYGVDISATNVNRAKIMLALVALQNGEIIQEDVFNLFTGDSLTFDF 191 Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LF 338 + NPP+ + ++KE K K+ + + F Sbjct: 192 RTMPNVANNNGLDIIVGNPPYVRS-----KHIDKETKKNLPL---WSTSKVGNADLYIPF 243 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL- 397 L G S +R + +N L +IV L Sbjct: 244 FEIGLTALNENGLLGYITVNTFFKSVNAR--------TLRNYFADNHLSLSIVDFGQQLV 295 Query: 398 FFRTNIATYLWILSNRKTEE---RRGKVQLINATDLWTSIR 435 F + T L +S +++E + V + A + R Sbjct: 296 FKKKLAYTCLTFMSKKQSESLLYVKADVADVEAQKNFVYSR 336 >gi|303257419|ref|ZP_07343432.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] gi|331000630|ref|ZP_08324285.1| hypothetical protein HMPREF9439_01933 [Parasutterella excrementihominis YIT 11859] gi|302859776|gb|EFL82854.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] gi|329570902|gb|EGG52610.1| hypothetical protein HMPREF9439_01933 [Parasutterella excrementihominis YIT 11859] Length = 561 Score = 61.5 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 102/365 (27%), Gaps = 84/365 (23%) Query: 127 LEKAGLLYKICKNFSGIELHPDTV-----------PDRVMSNIYEHLIRRFGSEVSEGAE 175 L+++ K+ + F ++ +Y+ + V Sbjct: 80 LDRSDCDRKLAEKFKTEYGRTHNFVHKFAQVVLPEEFDLLGTVYQSFL---TEGVKNSTG 136 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + T R V + PG + DP CG+G FL A Sbjct: 137 SYYTERSVAQ--------ELLDSLEAKPGA--SFLDPCCGSGTFLILAQE---------- 176 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L G + +P + A +++ + +++ +++ +RF + Sbjct: 177 --MGLKICGMDSDPIAVMIAKANLILSGAK------EYPDVRVIDFVNRWKSERRRFDFA 228 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +NPP+ K + V F M + L+ GG+ Sbjct: 229 ATNPPWSSKTKNVYADVSS----------------------FFFMKTLSLLKS----GGK 262 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A ++ S L + R L + + I T F + K Sbjct: 263 LAFLMPISMLN----IASHRLFREHLFSDCRLLEIRKFDTK-FSGVQTDFVSILAEKAKP 317 Query: 416 EER-----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470 ER G+++ I + + + + +IL G+ S Sbjct: 318 AERFRMNESGEIREIPLSIFQLTEQKTIFSATEPEVEIICKILS------KGEISLADSK 371 Query: 471 RTFGY 475 G Sbjct: 372 WALGV 376 >gi|84502048|ref|ZP_01000206.1| hypothetical protein OB2597_18212 [Oceanicola batsensis HTCC2597] gi|84390043|gb|EAQ02677.1| hypothetical protein OB2597_18212 [Oceanicola batsensis HTCC2597] Length = 1035 Score = 61.1 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 61/389 (15%), Positives = 107/389 (27%), Gaps = 86/389 (22%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF---SGIE 144 L L + R L S I + F D L G + + F + ++ Sbjct: 217 LHNLVADADRPGLRSLIDKLRSDFNGDFLGDDRHDPWQALTANG--FALLNQFLRRTDMQ 274 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGS-----EVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + S I L+ E + TPR++ LA Sbjct: 275 TGQGDFWNYDFSYIPVELLSGLYEKFLTPEEQAKEGAYYTPRNLAMLAVDQAFLASQDPL 334 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEP 249 ++D CG+G LT A + G ++ Sbjct: 335 D------EVIFDGACGSGILLTTAYRRLLALQEARLGRQLGFAERGDLLKRRIFGSDINF 388 Query: 250 ETHAVCVAGM---LIRRLESDPRRDLSKNI----------------QQGSTLSK-DLFTG 289 V + L+ L+ + ++ +QG + F G Sbjct: 389 MACRVTAFSLYLSLLEGLDPADILEAQESDGTKLPPLKGSNLAHGSEQGDFFREAHAFRG 448 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKL 346 +RF +SNPP+ + + + + + G+P + G+ + Sbjct: 449 RRFSLIISNPPWAEPEGASRTSADDWAEQ-------AGVPFVRRQIAGAYAL------RA 495 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL--PT--------- 395 GR ++L L A S D +E ++ PT Sbjct: 496 ADFLAESGRICLILPIGQLL--GASS-----------EDFVETLLNTYRPTRLINFGDLQ 542 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQL 424 L F T T L ++ + R V Sbjct: 543 GLLFPTAENTCHVFLGEGRSADARNLVPF 571 >gi|317055396|ref|YP_004103863.1| hypothetical protein Rumal_0686 [Ruminococcus albus 7] gi|315447665|gb|ADU21229.1| hypothetical protein Rumal_0686 [Ruminococcus albus 7] Length = 610 Score = 61.1 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 93/293 (31%), Gaps = 40/293 (13%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 + + Y I + I + + I+E L+ + + TP + + Sbjct: 47 SDIDYSIVDKVNQI--TESKLTLNELIAIFEMLVPQ---SEKKEKGVVYTPEIITKYIVS 101 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELE 248 + I T+ DP+CG G FL A ++ + + +G +++ Sbjct: 102 ---------HTLNCNNIPTVLDPSCGCGAFLVTAAEYIHERYSISYSDIISSYLYGVDID 152 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------FHYCLSNPPF- 301 + + + L + S N TL K + + F + NPP+ Sbjct: 153 SNAIDRIKSLLSLIVLMNGEEEKCSFNFICSDTLDKKTYDKLQKMHKNGFDCVVGNPPYV 212 Query: 302 -GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 K +D + +G +P F N L + GR + Sbjct: 213 RNKNMSEDTKRHLTNWVSSSIGNVDLYIP--------FFEIGINLL----SDNGRLGYIS 260 Query: 361 SSSPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTDLFFRTNIATYLWILSN 412 +S L S +R++ E +E I + +F T + ++ Sbjct: 261 PNSYLQGVNGRS----LRKYFAAEQHQLEIIDFRDSQVFENVTSYTCITLIDK 309 >gi|307327890|ref|ZP_07607072.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113] gi|306886408|gb|EFN17412.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113] Length = 1155 Score = 61.1 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 58/354 (16%), Positives = 112/354 (31%), Gaps = 65/354 (18%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L ++ + + V ++YE+ ++ + E+ + + + TP + L Sbjct: 298 DTLVQVIDAVNWEAIRAQKPDAHV--HLYENFLQEYDRELRKRSGTYYTPPRLAREMVRL 355 Query: 191 LLDPDDALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-- 245 G T+ DP GTG FL++ ++ VA+ S Q Sbjct: 356 TDAVLRTRLGCVEGFADEQVTIVDPAMGTGTFLSEIIDRVAEERSRRGEGFRGEAVEQLA 415 Query: 246 ----ELEPETHAVCVAGMLIRRLESDPRRDLSKN---IQQGSTLSKDL------------ 286 E + A VA M I + + D + TL+ Sbjct: 416 GRLIGFERQMAAYAVAQMRITQTLREQVTDTQLGDLRLHLADTLADPYERATLFTFLPDG 475 Query: 287 -------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----------GR 323 ++ +SNPP ++ E + VEK H+ + GR Sbjct: 476 DPLVENTRKADWIKREQKVTVMISNPPDRERAEGEGGWVEKGHEGDDRAPLLDDFRLGGR 535 Query: 324 FGPGLPKISDGSMLFLMHLANKL---ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 G K+ + + F K+ + G A + ++ L +G G +R++ Sbjct: 536 NGVHENKLKNLYVYFWRWATFKVFEQHRSESDRGIVAFISTAGFL----SGPGFRGMRKY 591 Query: 381 LLENDLIEAIVAL-PTD--------LFFRTNIATYLWILSNRKTEERRGKVQLI 425 L E I+ L P LF + + + + ++ + Sbjct: 592 LRETCSEGWIIDLSPEGIQPPMRTRLFEGVQQPLAIAVFVRSRADTELAHIRYV 645 >gi|312199459|ref|YP_004019520.1| hypothetical protein FraEuI1c_5666 [Frankia sp. EuI1c] gi|311230795|gb|ADP83650.1| hypothetical protein FraEuI1c_5666 [Frankia sp. EuI1c] Length = 1197 Score = 61.1 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 89/290 (30%), Gaps = 71/290 (24%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + D R + ++Y+ L +V + TP V L L P F Sbjct: 172 HDFTDDAWDTRFLGDLYQDL----SEDVRKKYALLQTPEFVEEFILDLTLTPAIDEFG-- 225 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVP-----HGQELEPETHA 253 + L DPTCG+G FL A + + + HG ++ P A Sbjct: 226 -YDVVKLIDPTCGSGHFLLGAFRRLLAEWEKNSPDRDVFERVQLALDAVHGVDINPYAAA 284 Query: 254 VCVAGML--------IRRLESDPRRDLSKNIQQGSTLSKDL------------------- 286 + + + L++ ++ G +L K+ Sbjct: 285 IAKFRLTIEALRVAGLTTLDAAAGYTFPLHVAVGDSLLKNRQLDLFGEERDELAEFAYAT 344 Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 R+H + NPP+ +K +A+ ++ + GR+ +P Sbjct: 345 EDLADHLGILEEGRYHAVVGNPPYFTVRDKKLNALYRDLYSSCAGRYTLSVP-------- 396 Query: 338 FLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 F G GR + ++S + E + L+EN Sbjct: 397 FAQRFFELARQSDGDGVGAGRVGQITANSFMRR--------EFGKKLIEN 438 >gi|163868201|ref|YP_001609409.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017856|emb|CAK01414.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1662 Score = 61.1 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 54/374 (14%), Positives = 105/374 (28%), Gaps = 47/374 (12%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + S + I + D ++ ++ Y K + P + ++ +YE Sbjct: 816 NAISQAMEKILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFT 874 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223 + + ++ TP +VV + D F +S G ++ DP GTG F+T Sbjct: 875 KAFKKTTDRLGIVYTPVEVVDFIIHSIDDVLRKEFGKSLGSRGVSILDPFTGTGTFITRL 934 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGST 281 + + H E+ + + + L K+I T Sbjct: 935 LQSDLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIEATYHGL-MKGDYIPFKHIGLADT 993 Query: 282 LSK-------DLFTGKRFHY-----------CLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 D + Y NPP+ + + D + R Sbjct: 994 FQTLKEKNLIDGMLKENSEYLELQKKLNIEVIFGNPPYSIGQKSENDNAKNTPYPILDKR 1053 Query: 324 FGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 S S+ L+ ++ G V ++ + G +R Sbjct: 1054 ISETYAAQSKASLIRGLYDSYIRAIRWASDRIKDRGVIGFVTNAGFI----TGHSMDSLR 1109 Query: 379 RWLLENDLIEAIVAL--------------PTDLF-FRTNIATYLWILSNRKTEERRGKVQ 423 + L+E I L +F + + IL ++ GK+ Sbjct: 1110 KCLVEEFSSLYIFHLRGNARISGEPRKKEGDGIFGEGSRAPIAISILVKNPESQQHGKIY 1169 Query: 424 LINATDLWTSIRNE 437 + D T Sbjct: 1170 FRDIGDSLTRKEKL 1183 >gi|281355399|ref|ZP_06241893.1| DNA binding domain protein, excisionase family [Victivallis vadensis ATCC BAA-548] gi|281318279|gb|EFB02299.1| DNA binding domain protein, excisionase family [Victivallis vadensis ATCC BAA-548] Length = 641 Score = 61.1 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 26/157 (16%) Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + +Y+ L R + A F TP +VV TA L D TL D Sbjct: 177 SDQLGFLYQALRR---TGSRVQAGSFYTPPEVVRSMTAGLTPHD----------GFTLLD 223 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G FL A + G +L+P + L + P D Sbjct: 224 PGCGSGQFLLGAAEAGWEFDQ---------LFGIDLDPLALRLAAL----NLLLAFPAVD 270 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 N++ L D F +RF + NPP+G+ + + Sbjct: 271 ALPNLKCADALLTDSFGRRRFDVVIGNPPWGRLADGE 307 >gi|57168918|ref|ZP_00368048.1| adenine specific DNA methyltransferase [Campylobacter coli RM2228] gi|57019754|gb|EAL56440.1| adenine specific DNA methyltransferase [Campylobacter coli RM2228] Length = 1028 Score = 61.1 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 106/343 (30%), Gaps = 48/343 (13%) Query: 56 REKYLAFGGSNIDLESFVKVAGY--------SFYNTSEYSLSTLGSTNTRNNLESYIASF 107 ++ + ++ E F + S+ +Y L + N + L S + Sbjct: 203 KDTFKNIEKIDLKDEEFCDILAQAIVYGIFVSYIENDDYDLEKIPIENFISFLPSTFRTL 262 Query: 108 SDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S+ F I LE + + ++ + + +YE ++ + Sbjct: 263 SEFVYFAIPSFSLPQDIKYTLENIKKTLSLIDKIALCKILNQDLESVSI-YLYEDFLKAY 321 Query: 167 ----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPTCGTGGF 219 ++ + F TP+ +V + + L + ++ G + D GTG F Sbjct: 322 DDLRATQKRKEGGVFYTPKSIVDMIVSSLDELLKTKLNKNKGFNDQGVKVLDFATGTGSF 381 Query: 220 LTDAMNHVADC------GSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRD 271 L + K + +G EL + V + ++R+ D Sbjct: 382 LASVFEKIISKESEVFKNEAIKNKFLKDIYGFELSFVPYIVARLKLGQILRKNGFVNFSD 441 Query: 272 LSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWEKD 308 I +TL ++D+ + L NPP+ K + Sbjct: 442 ADFQIFLNNTLDLEKIANFDMFMPLENLDTEWKKARDVKHSQDLLVILGNPPYNVKSKNK 501 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + + + K + G + ++D + F+ KL Sbjct: 502 GEDILELLKIYKQGLNDKNIQSLNDDYIKFMRFAQWKLLEQNK 544 >gi|259501496|ref|ZP_05744398.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191530|ref|ZP_07267784.1| putative modification methylase [Lactobacillus iners AB-1] gi|259167014|gb|EEW51509.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Length = 333 Score = 61.1 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 105/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F+ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 KL+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 KLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|268319769|ref|YP_003293425.1| hypothetical protein FI9785_1298 [Lactobacillus johnsonii FI9785] gi|262398144|emb|CAX67158.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 333 Score = 61.1 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 62/360 (17%), Positives = 122/360 (33%), Gaps = 49/360 (13%) Query: 98 NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152 +L+ + SFS F+ + + ++E + ++ + + ++ D +P Sbjct: 16 EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L + ++ + TP V + + K P +T+ DP Sbjct: 72 ALKVQIFTLLALKAITQDARDYNLMPTPSVVATIIALIW-------QKIVPTGKKTVVDP 124 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 GTG L + + + G + E + G + L+ D Sbjct: 125 AIGTGNLL---YSVIRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 L D + ++ LS+ P G + D +A E+ E F Sbjct: 178 ----YCQDAL--DPWMIEKSDVVLSDLPVGY-YPLDNNAQRYENHAKEGHSFAHT----- 225 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ + N L+ A ++ LF G G +E WL + I+AIV Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRIINDDQRR 450 LP ++F + + N + +V + +++ S+ K D + Sbjct: 274 LPDNMFSSQIQQKSILVFQNHGEKAVEREVLVAKLDSLKKPDSLVAFNMKLNDWYDKNKD 333 >gi|317013241|gb|ADU83849.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori Lithuania75] Length = 678 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 103/302 (34%), Gaps = 71/302 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + R G + + +TP V L L D+ ++D G Sbjct: 344 GKLFNEMYRWLGFTQDQLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393 Query: 216 TGGFLTDAMNH-----------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L +MN + + G E + + + V M++ Sbjct: 394 SAGLLVASMNLMIEDAKKCITSLEELEQKIVHIKAKQLLGIEKLQKIYILAVLNMILMG- 452 Query: 265 ESDPRRDLSKNIQQGSTLS-KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I +LS D + + + NPP+ Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDEEFKANAFVLNPPYSASGNG------------- 493 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M+F+ K++ G A++++ SS G + E +R Sbjct: 494 ---------------MVFVEQALAKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE + A + +P DLF +++ T++++ + + + +V+ IN ++ + N K Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588 Query: 440 KR 441 + Sbjct: 589 AK 590 >gi|284097505|ref|ZP_06385589.1| helicase domain protein [Candidatus Poribacteria sp. WGA-A3] gi|283830985|gb|EFC35011.1| helicase domain protein [Candidatus Poribacteria sp. WGA-A3] Length = 268 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 35/260 (13%) Query: 46 CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYI 104 + + E+Y A K A FY T + +++ L L ++ Sbjct: 3 DLAAEMKQIIEERYEADTD--------FKTAFNGFYETCKAAINPNLSQNAVEEMLVQHV 54 Query: 105 ASFSDNAKAIFEDFDF----------SSTIARLEKAGL-----------LYKICKNFSGI 143 + +F+ DF I L + + Y +N + Sbjct: 55 -LTERIFRTVFDHSDFSRRNIIASEIEKVIDILTRNDISRDAFLSPLDPFYNAIENAARN 113 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES- 202 H + +++ YE + F +V++ TP+ +V + F S Sbjct: 114 C-HDFSQKQHLLNTFYEQFFQGFSEDVADTHGIVYTPQPIVDFMVNSVSHILKTEFGRSL 172 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + DP GTG F+ M+ ++ HK H E+ + + + Sbjct: 173 SDEGVHIIDPFVGTGNFIVRLMHEISGAALQHKYQ--HELHCNEVMLLPYYIASLNIEQE 230 Query: 263 RLESDPRRDLSKNIQQGSTL 282 R + I T Sbjct: 231 YYHRTRRYLPFEGIVLADTF 250 >gi|297561667|ref|YP_003680641.1| DNA methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846115|gb|ADH68135.1| putative DNA methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1121 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 55/324 (16%), Positives = 90/324 (27%), Gaps = 77/324 (23%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL---LLDPDDALFKESPGMIRTLYDPT 213 ++YE + R+ + + + + TP V T +L L T DP Sbjct: 334 DLYETFLTRYDPALRKSSGSYYTPAPVADFLTEFTDSVLRKRMDLPLGFADRSVTTVDPA 393 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILV-----PHGQE---LEPETHAVCVAGMLIRRLE 265 G+G FL+ AM+ P + E T A V+ + + + Sbjct: 394 MGSGTFLSSAMDRARRNLEEEFGPVHTRTCLKDLYRDRLAGFERSTAAFAVSELRLHQQL 453 Query: 266 SDPRRDLSKNIQ---QGSTLSKDLFTGKRFH-----------------------YCLSNP 299 S+ +TL + F + NP Sbjct: 454 SEQYGAEVPEEHRRFLCNTLDDPNHHYQSFGRRYDDLVHFRDQANQVKNSTPVMVVIGNP 513 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD---------GS-----------MLFL 339 P+ + ++ A E + R G P S G + F Sbjct: 514 PYIESAKQRDPAPWLERR-----RSPAGDPVTSRPSMDEFRELGQGGLDYKLSAVSLYFW 568 Query: 340 MHLANKL--ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---- 393 K P G A V +S+ L G A +G R + IV L Sbjct: 569 RWATWKAFDAHPEQPSGVVAFVSTSAYL-TGDAFAGMRRYLRSTADEGW---IVDLSPEG 624 Query: 394 ---PTD--LFFRTNIATYLWILSN 412 P + +F + I + Sbjct: 625 HRPPANTRVFGGVQQPVCIGIFAR 648 >gi|289192475|ref|YP_003458416.1| N-6 DNA methylase [Methanocaldococcus sp. FS406-22] gi|288938925|gb|ADC69680.1| N-6 DNA methylase [Methanocaldococcus sp. FS406-22] Length = 999 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 28/198 (14%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 + ++L Y+ D I + D I ++E + +KI + Sbjct: 249 KHIASDLPDYLDWIVDEIITILNNID----IRKIEDS---FKIVGK------------ED 289 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDP 212 + YE + + E+ + + TP VV + + F K + DP Sbjct: 290 AFLHFYEDFLASYNPELRKSKGVYYTPLPVVEFIVNSVDEILKDRFGKRLHDENVRILDP 349 Query: 213 TCGTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVC--VAGMLIRRL 264 GTG FL + V H K + +G E+ + V ML+ Sbjct: 350 ATGTGTFLATVLERVHKNVKHTLFHVYLKERLLKNIYGFEILISPYLVAHLKLSMLLHNW 409 Query: 265 ESDPRRDLSKNIQQGSTL 282 R + N+ + L Sbjct: 410 HITLRGEERFNVYLTNAL 427 >gi|57865887|ref|YP_190007.1| hypothetical protein SERP2464 [Staphylococcus epidermidis RP62A] gi|57636545|gb|AAW53333.1| conserved domain protein [Staphylococcus epidermidis RP62A] Length = 48 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 15/40 (37%) Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 +W+ + L G+ ++ + L L+ + E Sbjct: 9 KLWQADDKLRGNMDADEYKNIALGLIFLKYISDCFEEKYE 48 >gi|42518836|ref|NP_964766.1| hypothetical protein LJ0911 [Lactobacillus johnsonii NCC 533] gi|41583122|gb|AAS08732.1| hypothetical protein LJ_0911 [Lactobacillus johnsonii NCC 533] Length = 333 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 61/354 (17%), Positives = 119/354 (33%), Gaps = 49/354 (13%) Query: 98 NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152 +L+ + SFS F+ + + ++E + ++ + + ++ D +P Sbjct: 16 EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L + ++ + TP V + + K P +T+ DP Sbjct: 72 ALKVQIFTLLALKAITQDASDYNLMPTPSVVATIIALIW-------QKIVPTGKKTVVDP 124 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 GTG L + + + G + E + G + L+ D Sbjct: 125 AIGTGNLL---YSVIRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 L D + ++ LS+ P G + D +A E+ E F Sbjct: 178 ----YCQDAL--DPWMIEKADVVLSDLPVGY-YPLDNNAQRYENHAKEGHSFAHT----- 225 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ + N L+ A ++ LF G G +E WL + I+AIV Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 LP ++F + + N +V + +++ S+ K Sbjct: 274 LPDNMFLSQIQQKSILVFQNHGDHAVEREVLVAKLDSLKGPESLVAFNMKLNDW 327 >gi|323126876|gb|ADX24173.1| hypothetical protein SDE12394_03250 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 541 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 93/271 (34%), Gaps = 32/271 (11%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG-GFLTDAM 224 + + + TP+ + +L +L ++ I ++DP G+G LT A Sbjct: 9 YSDNDRKKNGIYFTPKKIANLM------GCYSLHIKNTIDIPNIFDPAIGSGIFLLTIAK 62 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283 V G ++ E + + E N+ Q +LS Sbjct: 63 ELVKSSNVDIIKIIENHLFGVDIVKENVILSKILLGTLSYELKRSLPKKFNLVQLDSLSL 122 Query: 284 -----KDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 K LF+ + F +SNPP+ G++ D K + N G +P Sbjct: 123 TEKSVKSLFSIEHFDIVISNPPYVSGEQISDDTKIYFKHYPNTVYGNPDLYIP------- 175 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F L+ ++ + F + G ++R +L + ++ +D Sbjct: 176 -FFELGLKLLKPSG-----IGAFITPNSYFRSQNG---KKLRAYLRNKTEVIKLINFNSD 226 Query: 397 L-FFRTNIATYLWILSNRKTEERRGKVQLIN 426 L F + + + + ++++ ++ ++ Sbjct: 227 LVFDDISHYSAINFFIKKSNDQQQNRMYFLD 257 >gi|160882500|ref|ZP_02063503.1| hypothetical protein BACOVA_00451 [Bacteroides ovatus ATCC 8483] gi|156112081|gb|EDO13826.1| hypothetical protein BACOVA_00451 [Bacteroides ovatus ATCC 8483] Length = 272 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 24/186 (12%) Query: 91 LGSTNTRNNLESYI-ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L N N+ +YI FS A + + + ++ +L + + + Sbjct: 26 LDPVNVFNDFLTYIIHGFSPGAPP-LQSWKYKRQ-QNMKFMQMLTGWVRLMASRIKDDTS 83 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 D ++Y L+ + + F TP + L + + + Sbjct: 84 WYDP-FGDLYMALVSKSAQQS---QGQFFTPVHICDLMVLCTQTEEK-------KTGQRM 132 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 DPTCG+G L +H P G+++ + V MLI + Sbjct: 133 GDPTCGSGRLLLA----------YHARNPGNYLIGEDINRTCCLMTVCNMLIHGCVGEVI 182 Query: 270 RDLSKN 275 S N Sbjct: 183 CHDSLN 188 >gi|86739811|ref|YP_480211.1| putative DNA methyltransferase [Frankia sp. CcI3] gi|86566673|gb|ABD10482.1| putative DNA methyltransferase [Frankia sp. CcI3] Length = 1100 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 43/237 (18%) Query: 133 LYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 L + + S ++ + ++YE+ + R+ +++ + + + TPR+VV L Sbjct: 294 LDLLTRTISSVDWPAIRNGNRDAYLHLYENFLTRYDAQLRQQSGSYYTPREVVEHMVRLA 353 Query: 192 LDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------IPPI 239 D + G + DP GTG FL + VA+ S Sbjct: 354 EDVLRTRLGKDHGYADPDVRIVDPAMGTGTFLHAIIERVAETASEGGGEGMEIDAVAQLA 413 Query: 240 LVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------ 291 +G EL+ +AV L+R E R+ N+ TL ++ Sbjct: 414 ERLYGFELQIGPYAVAELRTSDLLRAEEIPAPREGL-NLFLTDTLDSPFSDTQKALFGYR 472 Query: 292 -----------------FHYCLSNPPFGKKWEK----DKDAVEKEHKNGELGRFGPG 327 + NPP+ K +K + + E++ PG Sbjct: 473 ELAASRQRADQVKGNVPVTVVIGNPPYDDKAKKRGKWAEKKIPGENRTPLDAFRHPG 529 >gi|289810867|ref|ZP_06541496.1| hypothetical protein Salmonellaentericaenterica_43567 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 155 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 6/126 (4%) Query: 81 YNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 Y Y L S + L+ Y + ++ K + + F + + + + ++ Sbjct: 27 YLPEGYRWDDLKSRIDQEQLQFYRKMLVHLGEDKKKLVQAV-FHNVCTTITEPKQITELV 85 Query: 138 KNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 N ++ + ++YE L+++ +E GA + TPR ++ LL Sbjct: 86 SNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 145 Query: 196 DALFKE 201 + + Sbjct: 146 REVVRR 151 >gi|322509984|gb|ADX05437.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] Length = 258 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 23/181 (12%) Query: 103 YIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 Y F+ N + + + RL+ L Y + P V+ +IY Sbjct: 54 YQNLFNHNIENEYLQRINRYDVSGRLKIKKLFYLLVDL-----CEAKGEPYDVLGSIYME 108 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L ++ + TP +V +L +++ + + ++ DP CG G L Sbjct: 109 L-----EIGNDHIGQYFTPSEVSNLCAQVVMTDLKKQLE--EEGVISISDPACGAGSTLL 161 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + S ++ L +++ +C + + + I G T Sbjct: 162 STVKLCLE--SKIQVQDHLYIEAADIDRNVALMCYIQLSL--------WAVPCRIFVGDT 211 Query: 282 L 282 L Sbjct: 212 L 212 >gi|300724413|ref|YP_003713733.1| hypothetical protein XNC1_3596 [Xenorhabdus nematophila ATCC 19061] gi|297630950|emb|CBJ91627.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 228 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 10/143 (6%) Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 TI + ++A + +I + FS + L P+ + +++ L + + F TP Sbjct: 55 KTINKYKRADV-DRIVQLFSHVVLGLAQEPNDFLGSVFMRL-----ELGDKDLQQFFTPW 108 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + + L L + P TL +P G G A + + + G L Sbjct: 109 SVARMMAQMQLHDAAGLLQTQP--FVTLCEPCVGAGCITLAAADVLRELGHD--PLCSLW 164 Query: 242 PHGQELEPETHAVCVAGMLIRRL 264 + +++P + + + Sbjct: 165 VYAIDIDPLAAVMAYIQFSLTGI 187 >gi|225028436|ref|ZP_03717628.1| hypothetical protein EUBHAL_02710 [Eubacterium hallii DSM 3353] gi|224954234|gb|EEG35443.1| hypothetical protein EUBHAL_02710 [Eubacterium hallii DSM 3353] Length = 457 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 57/439 (12%), Positives = 127/439 (28%), Gaps = 82/439 (18%) Query: 30 DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89 ++ + + L ++ E Y + + ++VA + + S S Sbjct: 25 EYRDSCVFLLFYQYLC---LKHGDSLEEAYKPGELVKMAIRGKLQVASFLKFMESASSFL 81 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 L + + + +F F ++ R+ + F D Sbjct: 82 HLLNKDFQ-----------------LTEFSFYKSLERVHSLEKQKSYARFFRKFLKKIDG 124 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + E L+R++ P+ + L D E + Sbjct: 125 W------DCKEELLRQY-------------PKLFILLIAEFAKLKKDTYISEELSELYHK 165 Query: 210 YDPTC-------GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + C G L + S + +G E E + +R Sbjct: 166 F--FCRRFHKKKGKCKVLFPEFQYGILASSIISTEKNIEIYGYTKEQEYIDIFTIVCYMR 223 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + D K + D L P G + + + + Sbjct: 224 GIPLDSLHLFMKKDWRAIRDLPDG-----ADNILIFMPEGVEAG---EYIASPKLSLGKE 275 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 +F G G FL+ + L+ G A V + L+ E++IR++L+ Sbjct: 276 QFYAGT----KGEFPFLLTAISCLKE----NGFLAAVFPGAMLYR---EGREAQIRKYLV 324 Query: 383 EN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 E + ++ I+ LP +F A + + + + + +++ + Sbjct: 325 EELNCLDTIMLLPDSIFHSIGQAEAILFFQMNRERK---DILFFDCSEIES--------- 372 Query: 442 RIINDDQRRQILDIYVSRE 460 ++ +Q I ++ R+ Sbjct: 373 --LDKEQIDTIDQLWSERK 389 >gi|307942694|ref|ZP_07658040.1| putative type I restriction-modification system methyltransferase subunit [Roseibium sp. TrichSKD4] gi|307774099|gb|EFO33314.1| putative type I restriction-modification system methyltransferase subunit [Roseibium sp. TrichSKD4] Length = 999 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 50/277 (18%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 V+S YE +R SE + + TPR + L + K + + DP Sbjct: 275 VLSQAYELYLRSHASERQKKQGGYYTPRPIADLMVRASIRALQHENKC---VDAKILDPA 331 Query: 214 CGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 G G FL A + + G +++ G+ + Sbjct: 332 AGAGVFLLTAFRELVAEKWRFDGKRPNTKTLRTILYNQITGLDIDEAALRFAALGLYLMS 391 Query: 264 LESDPRRDLSKNIQQ--------------GST----------LSKDLFTGKRFHYCLSNP 299 +E DP ++ G T L + ++ + NP Sbjct: 392 IELDPTPKPVDKLRFKNLRGNVLHRLVADGDTEGAQLGSLGPLVGEEH-NAKYDIVIGNP 450 Query: 300 PFGK-----KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 P+ W ++ V++ + + P LP + F+ + + G Sbjct: 451 PWASGTKLPDWNLVQNNVKQIAEKRGIKNSKPLLPNEV-LDLPFVWRAMDWAKPD----G 505 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + L + LF G +E R + E I +IV Sbjct: 506 QISFALHARMLFQQG--DGMAEARASIFEALDITSIV 540 >gi|295087087|emb|CBK68610.1| Type I restriction-modification system methyltransferase subunit [Bacteroides xylanisolvens XB1A] Length = 197 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 18/146 (12%) Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 ++ + +L+ GRAA+++ LF + I+ LL++ + I+ LP +F Sbjct: 1 MVLIMYRLK----ANGRAAVIVPDGFLF--GVDGAKLAIKTKLLKDFNLHTIIRLPGSIF 54 Query: 399 FR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDDQRRQIL 453 T+IAT + +N + E+ T + +G K + + + + I Sbjct: 55 SPYTSIATNILFFNNERVEDAPDGY-STKETWFYRLDMPDGYKHFSKTKPMKLEHCQPIK 113 Query: 454 DIYVSREN------GKFSRMLDYRTF 473 + + R+ + SR + Sbjct: 114 EWWHDRKEIVSQDGNEKSRCFSVQDL 139 >gi|209524848|ref|ZP_03273394.1| DNA or RNA helicase of superfamily II [Arthrospira maxima CS-328] gi|209494727|gb|EDZ95036.1| DNA or RNA helicase of superfamily II [Arthrospira maxima CS-328] Length = 1026 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 86/303 (28%), Gaps = 51/303 (16%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---- 103 E + +K G +DL + F + S L + N+ Sbjct: 156 WEKAAAEFGDKVRGLGEKLVDLIESQRKTNPQF-IGAFQGFSNLCRQSINPNISDAAVEE 214 Query: 104 --IASFSDN--AKAIFEDFDFSS------TIAR---------------LEKAGLLYKICK 138 I + IF + DF+ I + L Y+ + Sbjct: 215 MLIQHLLTERIFRQIFNNPDFTRRNIIAVEIEKVIEALTSKSFSRAHFLGDVDYFYRALE 274 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 + ++ +YE + F V++ TP+ +V + + Sbjct: 275 EAAATITEYSEKQ-HFLNTVYERFFQGFAVNVADTHGIVYTPQSIVDFMVRSVDEILRTE 333 Query: 199 FKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 FK+S + DP GTG F+ M + HK H E+ + + Sbjct: 334 FKKSLSDKGVHILDPFVGTGNFIMRIMREIRKTALSHKYQQE--LHCNEVMLLPYYIASM 391 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPP 300 + L + + I T S DLFT + + NPP Sbjct: 392 NIEHEYLTATGQYQPFDGICLVDTFSVQEALQLDLFTPENTQRVKQQQSSPIFVVIGNPP 451 Query: 301 FGK 303 + Sbjct: 452 YNV 454 >gi|313126079|ref|YP_004036349.1| n-6 DNA methylase./eco57i restriction endonuclease [Halogeometricum borinquense DSM 11551] gi|312292444|gb|ADQ66904.1| N-6 DNA Methylase./Eco57I restriction endonuclease [Halogeometricum borinquense DSM 11551] Length = 1295 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 57/363 (15%), Positives = 97/363 (26%), Gaps = 68/363 (18%) Query: 38 FTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 L+ + + VR + + SN + K F+ N Sbjct: 235 LMFFYYLQKKGWIGERKDFVRWFHQQYEESNEEDVFHEKWLSALFFEGMNSPEGGEIEAN 294 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF----------SGIEL 145 +++E+ I +F+ + + L + L + + F Sbjct: 295 LPSDVETAILGLPYMNGGLFQPTEEDESNTFLSDS-ALKSVIEEFLEQYNFTVTEESPYD 353 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA------------------ 187 V ++ IYE LI + A F TPR V L Sbjct: 354 IDVAVDPAMLGKIYESLI---AEQERGEAGIFYTPRVEVDLMCRMALYEQFCDHANDLDA 410 Query: 188 ------TALLLDPDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGS 232 + ES G + DP CG+G FL V + Sbjct: 411 EGKQRIVEFIFSEPQDWDAESNGETEQLENILHELRIVDPACGSGAFLVGMKQVVTELYR 470 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 P Q + + V + +R E L + ++ +R Sbjct: 471 KLGKTPDYHLKEQIINENLYGVDIKDWAVRVAEFRLWLSLVEG--------EEQLPDQRP 522 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLELPP 350 P F K + ++K G F L + DG L+ +L+ Sbjct: 523 VL----PNFSFKLKVGDSLIQK-----LDGEFVSLDTLTRTLDGDTAGLLTELKELKREH 573 Query: 351 NGG 353 G Sbjct: 574 FEG 576 >gi|282882760|ref|ZP_06291367.1| modification methyltransferase [Peptoniphilus lacrimalis 315-B] gi|281297421|gb|EFA89910.1| modification methyltransferase [Peptoniphilus lacrimalis 315-B] Length = 298 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 60/356 (16%), Positives = 110/356 (30%), Gaps = 77/356 (21%) Query: 207 RTLYDPTCGTGGFLTDAM-NHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + D G+G FL AM N + + + +G E + E A+ A MLI Sbjct: 1 MKILDHCAGSGAFLVKAMANMIKEVGGVNTKEAEDIKQNKLYGIEFDREIFALACANMLI 60 Query: 262 RRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +D N++Q T K+ K L NPP+ E K Sbjct: 61 H-------KDGKTNLEQFDTREKEACKWIKSKNITKVLMNPPY-------------ERKY 100 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 G + + G + A +L L E + Sbjct: 101 GCK-------------------KIVTNVLDNVPAGIKCAFILPDKKL--------EKDRM 133 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 LL+ ++ I+ LP LF + T +++ K ++ + D ++N+G Sbjct: 134 HSLLKKHTLDMIIKLPEKLF-DAGVTTSVFVFETGKPQKDKKIFACYMEDDGLERVKNQG 192 Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM-SFILDKTGLAR 497 + DI + + R KV +I K L+ Sbjct: 193 RH-------------DIKNKWKEIE------KYWLEVARTKVDTKYNTHQWIDSKEYLSY 233 Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + + + +D + ++I + E + + + +E K K+ Sbjct: 234 QKPQKPFEIYEEDFKKTIIDFI-LFEEKIDVKEFNEKLLNQVLYKSEYKDGKLMLD 288 >gi|254562734|ref|YP_003069829.1| hypothetical protein METDI4368 [Methylobacterium extorquens DM4] gi|254270012|emb|CAX25998.1| hypothetical protein METDI4368 [Methylobacterium extorquens DM4] Length = 909 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 24/216 (11%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TP + L L + + D CG+G FL +A+ + Sbjct: 257 HFTPPSLARSLCEQALSSLGGLASRAN---VVVADFACGSGAFLVEALRSLER----GGY 309 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 + G+++ + + + E R ++ TL + + Sbjct: 310 AGRVTLVGRDISTAAIDMARFVLDMAGAEWPGRGRFDVDLAVADTLRSEGLP--MADLIV 367 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 NPPF +D ++ GR G P IS M F++ L G Sbjct: 368 MNPPFAPWQGLSEDERSVLAESL--GRHKAGRPDIS---MGFVLRALGALRTD----GAL 418 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLEND--LIEAI 390 A++L +S L A R + E ++A+ Sbjct: 419 AVLLPASALETKAAEG----WRGRISEGRSVYLDAV 450 >gi|317010154|gb|ADU80734.1| putative type II DNA modification enzyme (methyltransferase) [Helicobacter pylori India7] Length = 678 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 104/302 (34%), Gaps = 71/302 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + R G + + +TP L L D+ ++D G Sbjct: 344 GKLFNEMYRWLGFTQDKLNDVVLTPPYAATLLARLSKVNKDSF----------VWDFATG 393 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L +MN + + G E+ P+ H + V M++ Sbjct: 394 SAGLLVASMNLMIEDAKKCITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG- 452 Query: 265 ESDPRRDLSKNIQQGSTLS-KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I +LS D + + + NPP+ Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDEAFKANAFVLNPPYSASGNG------------- 493 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M+F+ K++ G A++++ SS G + E +R Sbjct: 494 ---------------MVFVEQALAKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE + A + +P DLF +++ T++++ + + + +V+ IN ++ + N K Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588 Query: 440 KR 441 + Sbjct: 589 AK 590 >gi|9622223|gb|AAF89680.1| adenine-specific methyltransferase [Bacillus sp. LU11] Length = 568 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 43/253 (16%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--- 224 + TP+ V +L + L RT+ +P G G FL Sbjct: 16 ENKKDMLGQVFTPQGVANLMVSFGL----------NTKPRTILEPCFGEGVFLESIQKRK 65 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +VA+ + V + + + + ++ + + Sbjct: 66 EYVANDTKIIGVEIDPVLYERVRSKFP------NLELYNMDFFDFKGV------------ 107 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + NPP+ ++ + +K+ + R IS S L++ + Sbjct: 108 -------VDCVIMNPPYIRQELLREKMPRFLNKSDIITRLPLLQYPISSRSNLYVYFIIK 160 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 + G AI+ + A + +++LL+N I+AI+ D+F ++ Sbjct: 161 AWSILSEKGSIIAIIPN-----TWMAAEYGNSFKKFLLQNFWIKAIIQFNKDVFPDADVE 215 Query: 405 TYLWILSNRKTEE 417 + + LS K E Sbjct: 216 SCILYLSKEKDSE 228 >gi|301646759|ref|ZP_07246616.1| conserved domain protein [Escherichia coli MS 146-1] gi|301075058|gb|EFK89864.1| conserved domain protein [Escherichia coli MS 146-1] Length = 110 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 6/105 (5%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63 A L IW+ A D+ G DF + +L R + A + Y Sbjct: 7 QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66 Query: 64 GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105 S I + +K GY Y S+ + NT + L + + Sbjct: 67 DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLN 110 >gi|23428558|gb|AAL23675.1| TaqII restriction endonuclease [Thermus aquaticus] Length = 1105 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 96/333 (28%), Gaps = 58/333 (17%) Query: 40 LLRRLECALEPTRSA-------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 LR E LE R +RE++ D F Y+ T + L+ Sbjct: 172 FLR--EAVLEEVRENPNGELARLREEWRKNLLPEGDERVFADA--YAQLITYGFLLAAAL 227 Query: 93 STNTRN-NLESYIASFSDNAKAIFEDFDFSSTIARLEK----AGLLYKICKNFSGIELHP 147 + LE + + E ++ L + LL + + Sbjct: 228 DSGEEPLYLERALELLEGRYGLLMEALFVANHPRLLAEIRPAYDLLRRALRAVDPSVFRV 287 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG--- 204 V + YE ++ + ++ + + TP VV L+ + F + G Sbjct: 288 QGVDPWL--YFYEDFLQAYDPDLRKDMGVYYTPVPVVRAMVRLVDEALKEGFGLAEGLAH 345 Query: 205 MIRTLYDPTCGTGGFLTDAMN---------HVADCGSHHKIPPILVPHGQELEPETHAVC 255 T+ DP GTG FL + + + HG EL +AV Sbjct: 346 EKVTVLDPAMGTGTFLLATLERALANMASLYGRGYRGQYAKEVASRLHGIELMVGPYAVA 405 Query: 256 VAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFT-----------------------GK 290 + I+ + N+ TL K Sbjct: 406 QLRLSQAIQGEGGSLPEEGL-NLYLADTLEAPEAPPLEQVFFYERLAEERKRAAELKRDK 464 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 L NPP+ + + E+E K G + R Sbjct: 465 PILVVLGNPPY--DRVEGESQEERERKGGWVLR 495 >gi|10954534|ref|NP_044172.1| hypothetical protein MJECS02 [Methanocaldococcus jannaschii DSM 2661] gi|2496196|sp|Q60301|Y3402_METJA RecName: Full=Uncharacterized adenine-specific methylase MJECS02 gi|1522636|gb|AAC37060.1| hypothetical protein MJ_ECS02 [Methanocaldococcus jannaschii DSM 2661] Length = 1181 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 40/333 (12%), Positives = 90/333 (27%), Gaps = 64/333 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ LE R +R Y + SN+ + + FY + N R Sbjct: 297 LIFIKFLEDKGIVPRDLLRRTYEDYKKSNVLINYYDAYLKPLFYEVLN-TPEDERKENIR 355 Query: 98 NNL----ESYIASFSDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVP- 151 N Y+ +F + + ++ ++ ++ ++ + T Sbjct: 356 TNPYYKDIPYLNG------GLFRSNNVPNELSFTIKDNEIIGEVINFLERYKFTLSTSEG 409 Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT---------------- 188 ++ +YE LI + +G + TP ++ Sbjct: 410 SEEVELNPDILGYVYEKLINILAEKGQKGLGAYYTPDEITSYIAKNTIEPIVVERFKEII 469 Query: 189 ------ALLLDPDDALFKESPGMIR---------------TLYDPTCGTGGFLTDAMNHV 227 + D + E + + DP G+G FL A+ + Sbjct: 470 KNWKINDINFSTLDEILNEDSKIAENKHILRAFLDELDKIRILDPAVGSGHFLISALKEL 529 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--D 285 ++ E + + + ++ D ++ L + D Sbjct: 530 LQIKKRIYYLLREEM---DIYKEKLGIILNNLY--GVDIDDIAVEIAKLRLWLALIENLD 584 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + KR L N + + E+ Sbjct: 585 VEALKRGEVLLPNIEYNVRCGNSLVGWIDENLK 617 Score = 45.7 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 30/183 (16%) Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + F + NPP+G + + K E +F+ + + + Sbjct: 754 KEEGFDVIIGNPPYGNLLSPTEKEIMKRRDTPEFD--------------IFVTFIVHSSK 799 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 L N G ++ SS G S +R+ L ++ ++ LP D+F + + Sbjct: 800 LLKNEG-YLGFIIPSSF----GTGVRYSNLRKELFTKMCLKKLIYLPFDVFSGAYVDNCI 854 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 IL K + V + KK + I+ + + + Y N R+ Sbjct: 855 IILHK-KPPKSEDLVLIY----------AFPKKTKKISFEFKNDLFIEYSKILNDPKCRI 903 Query: 468 LDY 470 Sbjct: 904 FPK 906 >gi|150024141|ref|YP_001294967.1| type I endonuclease-methyltransferase fusion protein [Flavobacterium psychrophilum JIP02/86] gi|149770682|emb|CAL42146.1| Probable type I endonuclease-methyltransferase fusion protein [Flavobacterium psychrophilum JIP02/86] Length = 1011 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 58/390 (14%), Positives = 115/390 (29%), Gaps = 73/390 (18%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L LE + +G ++ ES++ + N L + Sbjct: 196 LFLLYLEDRGATKKE-------FYGEFSLKAESYLDLLKQGEVNHVYSLFEKLAEDFNGS 248 Query: 99 NLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + + + F+S + L+ + F+ + + ++S Sbjct: 249 LFNIEENEINLVTREHLDLIRQCFTSGYTK-SNQIKLFSYWRLFNFSIIRIE-----LLS 302 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 IYE+ + + + F TP L+L+ + DP+CG+ Sbjct: 303 EIYENFLSELDKKAKKNTGTFYTPPS----LVELILNEKLPVRNNETDYNVKTLDPSCGS 358 Query: 217 GGFLTDAMNHVADCGSHHKIPP-----------ILVPHGQELEPETHAVCVAGM------ 259 G FL + + + G EL+ ++ V + Sbjct: 359 GIFLVQSFKRLVKRYENKHNSKLNDFNILIDILKSNIFGIELDGKSIKVAAFSLYLALLD 418 Query: 260 -----------------LIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPP 300 LI E ++ N+ + T+S ++ + F + NPP Sbjct: 419 NLDPKTDWWNGTIKFPYLINDSEDTTLKEQGNNLFKRDTISDLSEIKKLQNFDLIVGNPP 478 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 FG +K + K + L +H A L G+ A++ Sbjct: 479 FGT--KKLLPTITAYCKKESFAQEMV----------LPFLHKATLLAPK----GKIALIF 522 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 ++ L N R+WL +E + Sbjct: 523 NTKVLTNTG--GTYQNFRKWLFNETYVEKV 550 >gi|262372344|ref|ZP_06065623.1| predicted protein [Acinetobacter junii SH205] gi|262312369|gb|EEY93454.1| predicted protein [Acinetobacter junii SH205] Length = 142 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 12/108 (11%) Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHA 253 P + DP CGT GFL A ++ + + G EL P T Sbjct: 4 MQPKPSEVIQDPACGTAGFLIAADAYIRQHHDLYALTEQETQFYTLDAFVGVELVPNTRR 63 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 + L+ + + I+ G++L + L+ + Sbjct: 64 LAQMNCLLHDIGGEQGA-----IKLGNSLGPVGQALAKADVQLATLNW 106 >gi|256810317|ref|YP_003127686.1| N-6 DNA methylase [Methanocaldococcus fervens AG86] gi|256793517|gb|ACV24186.1| N-6 DNA methylase [Methanocaldococcus fervens AG86] Length = 1012 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 28/198 (14%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 + ++L Y+ D I + D I ++E++ + + Sbjct: 249 KHIASDLPDYLDWIVDEIITILNNID----IKKIEES---------------FKISGKED 289 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDP 212 + YE + + E+ + + TP VV + + F K + DP Sbjct: 290 AFLHFYEDFLASYNPELRKSKGVYYTPLPVVEFIVNSVDEILRDRFGKRLHDENVRILDP 349 Query: 213 TCGTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVC--VAGMLIRRL 264 GTG FL + V H K + +G E+ + V ML+ Sbjct: 350 ATGTGTFLAVVLKRVHKNVKHTLFQAYLKERLLKNIYGFEILISPYLVAHLKLSMLLHNW 409 Query: 265 ESDPRRDLSKNIQQGSTL 282 R + NI + L Sbjct: 410 HITLRGEERFNIYLTNAL 427 >gi|153955312|ref|YP_001396077.1| methyltransferase [Clostridium kluyveri DSM 555] gi|219855732|ref|YP_002472854.1| hypothetical protein CKR_2389 [Clostridium kluyveri NBRC 12016] gi|146348170|gb|EDK34706.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] gi|219569456|dbj|BAH07440.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 562 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 98/327 (29%), Gaps = 72/327 (22%) Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 V+ +YE + + F TP +V L D Sbjct: 1 MEKRYDSTVLGEVYE---KSMNKSERKERGSFYTPYFIVEYIVENTLSNLDVKLN----P 53 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------------------- 242 + DP+CG+G FL A + + + + Sbjct: 54 FVKVLDPSCGSGYFLLKAYDILMRKFNENLESIRCKFKDERYIIETKNGLKNIYGLEYWQ 113 Query: 243 -------------HGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSK---- 284 +G +L+ + + ++ + + + + NI ++L + Sbjct: 114 YSNLSYHILKECIYGADLDEKAVELAKINLIGKSGINFNFKN----NIICCNSLIRWEKE 169 Query: 285 ---------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 F +++ Y L NPP+ K K +E K + G + + Sbjct: 170 HKEHEFSHIGEFWEQKYDYILGNPPWVSLSRKHKKDIEDNLKE-YYSKNYEGNTYLPNLY 228 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F+ L++ GGR ++ + + R+ LLE I +V Sbjct: 229 EYFIKRSMEILKV----GGRFGFIIPD----RLASNLQYKDFRKKLLEKYNIINVVF--E 278 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKV 422 F N T + I N+ + + KV Sbjct: 279 IKFPEINTDTMIIIAENKYSRHNKIKV 305 >gi|325996727|gb|ADZ52132.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori 2018] gi|325998321|gb|ADZ50529.1| putative type II restrcition enzyme/ methyltransferase [Helicobacter pylori 2017] Length = 599 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 69/449 (15%), Positives = 140/449 (31%), Gaps = 113/449 (25%) Query: 40 LLRRLECA------LEPTRSAVREKYLA----FGGSNIDLESFVKVAGYSFY-----NTS 84 ++R++ LE R ++ D E Y + Sbjct: 186 FIKRVDTLSLSDEDLERIREKKNQEIEDCLTRLNNDIYDKEKNFLSEHNRVYLVIASIIA 245 Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG------LLYKICK 138 +S L + + +L+S + + I L + LL + + Sbjct: 246 NLGISNLVAPLNKEDLKSSDENGERDGDKILRKIRSFLKHKHLSEEKERSIISLLEPLLR 305 Query: 139 N----------------FSGIE-----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 N FS I + + ++ + R G + + Sbjct: 306 NENNNKAINGESRLKRCFSEIVDSLGVYYKIGLSTDFTGKLFNEMYRWLGFTQDKLNDVV 365 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------- 227 +TP L L D+ ++D G+ G L +MN + Sbjct: 366 LTPPYAATLLARLSKVNKDSF----------VWDFATGSAGLLVASMNLMIEDAKKRITS 415 Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KD 285 + G E+ P+ H + V M++ D S I ++LS D Sbjct: 416 PEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG-------DGSSQILNQNSLSGFD 468 Query: 286 LFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + + + NPP+ M+F+ Sbjct: 469 GKVNDKEFKANAFVLNPPYSASGNG----------------------------MVFVEQA 500 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401 K++ G A++++ SS G + E +R +LE + A + +P DLF + Sbjct: 501 LAKMQS-----GYASVIIQSSA---GSGKAKEYNVR--ILEKHTLLASIKMPLDLFIGKS 550 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL 430 ++ T++++ + + + +V+ IN ++L Sbjct: 551 SVQTHIYVFRVNEKHDAKQRVKFINFSNL 579 >gi|308062637|gb|ADO04525.1| adenine specific DNA methyltransferase [Helicobacter pylori Cuz20] Length = 1197 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRENKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y NP F + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELSNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495 >gi|253681420|ref|ZP_04862217.1| modification methylase family protein [Clostridium botulinum D str. 1873] gi|253561132|gb|EES90584.1| modification methylase family protein [Clostridium botulinum D str. 1873] Length = 590 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 55/372 (14%), Positives = 110/372 (29%), Gaps = 53/372 (14%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRV---------MSNIYEHLIRRFGSEVSEGAEDF 177 L+K LY I I + S+ Y L R E + Sbjct: 6 LDKLNELYNIINTPIDITFKNMAIDKYKKVLNIGKEKFSDTYMDLKER---EKIKEKGIV 62 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KI 236 TP+++ + ++ +D + DP CG G + + + K Sbjct: 63 YTPKEIANYIVENVIFKED----IINNPYIKILDPACGCGDIIIVCYEKLKTIYEENLKF 118 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI------QQGSTLSKDLF--- 287 + + + + + ++ + L+ ++ + K F Sbjct: 119 INEVNGINLKKQDIPKHIVKNNLYGFDIDEIAIKILAVDLFKASGYFYENNFKKQDFLLE 178 Query: 288 -TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 ++F+ + NPP+ +++KE+ F D S F N L Sbjct: 179 KLSEKFNIIVGNPPY-----VGHKSIDKEYSKKLKINFKEIYKDKGDISYCFFQQAINNL 233 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------ 400 + SP SGE E+R+ L E + IV F+ Sbjct: 234 SKKGKLSFITSRYFIESP-------SGE-ELRKILKEVCSLYKIVD-----FYGIRPFKR 280 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 + + L+N + + ++Q+I + + + I + Sbjct: 281 IGVDPVIIFLTN--EQNIQEEIQVIKPQKFSKKEEKNFYNSLFLKKGECYKSFYINKNYL 338 Query: 461 NGKFSRMLDYRT 472 N K + D + Sbjct: 339 NNKGWILRDKKE 350 >gi|270284038|ref|ZP_06193809.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM 20093] gi|270277980|gb|EFA23834.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM 20093] Length = 185 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 38/166 (22%) Query: 205 MIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 R L DPTCGT GFL AM+ +AD + K HG EL+ AV A M++ Sbjct: 46 KDRVLLDPTCGTAGFLISAMHRMLTLADTDAQKKNIKKKQLHGFELQSNMFAVAAANMIL 105 Query: 262 RRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 R +D + N++ L K+ K L NPP+ + + D + E Sbjct: 106 R-------KDGNSNLECCDFLRKNPAQVQLKGATVGLMNPPYSQGTKADPEQYEIS---- 154 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 F+ H+ + L + RAA+++ S + Sbjct: 155 ------------------FIEHMLDSLAIDA----RAAVIVPQSSM 178 >gi|329913606|ref|ZP_08275980.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Oxalobacteraceae bacterium IMCC9480] gi|327545303|gb|EGF30547.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 7/99 (7%) Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409 GGRAA+++ LF + E+RR ++E ++A+++LP+ +F ++T + + Sbjct: 23 KPGGRAAVIVPDGVLF--GSSKAHKELRRMIVEEQKLDAVISLPSGVFKPYAGVSTAILL 80 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 + + V + + + KR+ + + Sbjct: 81 FTKTNSG-GTENVWFYD---MKQDGWSLDDKRQPLLSEN 115 >gi|254455208|ref|ZP_05068642.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198263492|gb|EDY87765.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 274 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 17/148 (11%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 K + + + D+ P ++ +Y L ++ A F TP ++ L L Sbjct: 76 KLMAHLVMALDSEPRDILGPLYMEL-----EIANKDAGQFFTPPELSELMANLTFGDMLG 130 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 P + T +P CG GG + + + G + +++ +C Sbjct: 131 RLDSQPFI--TAGEPACGGGGMILALVKVMTRAGHDPARKLWVQAI--DVDRLAALMCYV 186 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + + ++ I G+TLS D Sbjct: 187 QLSLWNVPAE--------IIVGNTLSWD 206 >gi|159898461|ref|YP_001544708.1| superfamily II DNA/RNA helicase [Herpetosiphon aurantiacus ATCC 23779] gi|159891500|gb|ABX04580.1| DNA or RNA helicase of superfamily II [Herpetosiphon aurantiacus ATCC 23779] Length = 1024 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 67/474 (14%), Positives = 135/474 (28%), Gaps = 88/474 (18%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL------ESYIASF 107 RE+ + L + T+ L N+ E I Sbjct: 159 EFRERVPELAQGVLRLIEREISEKNQRFITALERFMALVREAINPNISVSAVEEMLIQHL 218 Query: 108 SDN--AKAIFEDFDFSS------TIARL---------EKAGLLYKICKNFSGIELHPDTV 150 + +F + DF + I + + L ++ + + IE T+ Sbjct: 219 LTERIFRKVFNNPDFVNRNVIAREIETVIQALTSRSFNRNDFLRELDRFYGAIESTAATI 278 Query: 151 PD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG- 204 + ++ +YE+ + F +V++ TP+ +V + + F S G Sbjct: 279 ENFSHKQDFLNTVYENFFQGFSIKVADTHGIVYTPQPIVDFMVRSVEELLRREFNTSLGN 338 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + DP GTG FL M+ + K H E+ + + + Sbjct: 339 AGVHVLDPFVGTGNFLLRVMHEIPRSKLRQKYAEE--LHCNEVMLLPYYIASMNIEHLYY 396 Query: 265 ESDPRRDLSKNIQQGSTLSKDL--------------------FTGKRFHYCLSNPPFGKK 304 E I T + + NPP+ + Sbjct: 397 ELTNSYQEFNGICLVDTFELAQVGAGQQLGLFVPENTERVLKQQQQDIFVIIGNPPYNAR 456 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA---IVLS 361 + D + R + D N L P R A I+ + Sbjct: 457 QVNENDNNKNRKYEIIDQR--VAMTYSRDSQ----QTNKNALNDPYVKSFRWAADRIIRN 510 Query: 362 SS----PLFNGRA---GSGESEIRRWLLEN-DLIEAIVALPTDL------------FFRT 401 L + +R+ L ++ D I ++ L ++ F Sbjct: 511 GDEGIVALVTNNSFIDDLSFDGMRKHLAQDFDAIY-VLDLGGNVRKNPKLSGTTHNVFGI 569 Query: 402 NIATYLWILSNRK--TEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQI 452 + + L ++ T+ K+ A ++W + +K ++N + +I Sbjct: 570 QVGVSIIFLIKKRGSTKASDAKIWYARAGEMW----KKQEKFNLLNQAETIDKI 619 >gi|91204873|ref|YP_537228.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] gi|91068417|gb|ABE04139.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii RML369-C] Length = 190 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 56/139 (40%), Gaps = 13/139 (9%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LF+ + L+ G+ +V+ + +R+ +L+N I+AI++LP Sbjct: 6 LFMEWIVKALKP----NGKVFVVVPDGIFNRQN----DKNLRQLILDNCFIDAIISLPLK 57 Query: 397 LFFRTNIATYLWILSNRK--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 FF T TY+ ++ + ++ + V +++ + R I D ++ ++ Sbjct: 58 TFFTTPKKTYILAITKKHNISQIQTDPVFTYLCSEIGE---SRDIYRFDIEQDDLKEAVN 114 Query: 455 IYVSRENGKFSRMLDYRTF 473 ++ + + K Sbjct: 115 LFNAFKGSKKYFANINHDK 133 >gi|85372973|ref|YP_457035.1| type II restriction enzyme, methylase subunit [Erythrobacter litoralis HTCC2594] gi|84786056|gb|ABC62238.1| type II restriction enzyme, methylase subunit [Erythrobacter litoralis HTCC2594] Length = 854 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 71/455 (15%), Positives = 132/455 (29%), Gaps = 126/455 (27%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF------ 166 + F TI +L + + +P ++ +YE + + Sbjct: 184 ETLDTFTLDLTIDDKVLKPILKSLY--YPESPYEFSVLPADILGQVYERFLGKVIRLAGS 241 Query: 167 ------GSEVSEGAEDFMTPRDVVHLATALLLDPD-----------DALFKESPGMIRTL 209 EV + + TP +V L + ++P +R + Sbjct: 242 RAIIEEKPEVKKAGGVYYTPAYIVDYIVKNTLGKLLEGKTPAQASGEDKRTKNPAPVR-V 300 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------------------------- 240 DP CG+G FL A ++ D + Sbjct: 301 IDPACGSGSFLIGAYQYLLDWYRDAYVSDDPAKYTSGKEPKLLEVGKDDWRLTIAERRRI 360 Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTL 282 G +++ + V +L++ LE + DL +NI+ G++L Sbjct: 361 LLTHIFGVDIDTQAVEVTKLSLLLKVLEGETADAMARQMDFFRIRALPDLGQNIRCGNSL 420 Query: 283 --------------SKDLF----------------TGKRFHYCLSNPPFGKKWEKDKDAV 312 S D K F + NPP+ KD+ Sbjct: 421 IGSDFYKTYSYSLFSDDDHIAMNVFDWEIEFPFLADTKGFDCVIGNPPYLFSAGKDQALY 480 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ R+ S+ F ++ K G A ++ S L + Sbjct: 481 YQK-------RYQL-----SEYQTDFYVYFIEKGTHLLKPDGILAYIVPDSWLNSAN--- 525 Query: 373 GESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431 S +R LL N+ A +++ +F NI ++ N K ++ V+ + T+ Sbjct: 526 -FSRVRHSLL-NEWSTAELSIFEYKVFRDANIENTVFFTRNAKPSKKLDIVRFTSPTEFE 583 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 T + + I Y R SR Sbjct: 584 TMSTLDVADINRLG-----LINPRYDKRAERIISR 613 >gi|261820019|ref|YP_003258125.1| hypothetical protein Pecwa_0697 [Pectobacterium wasabiae WPP163] gi|261604032|gb|ACX86518.1| domain of unknown function DUF1738 [Pectobacterium wasabiae WPP163] Length = 653 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 18/173 (10%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 + I + D+ I R + A + F+ + + + +++ L Sbjct: 465 VQEIED--DYMRRIKRYKTADQ-RRFPVLFNTLVDGMEFSAADFLGSVFMEL-----ELG 516 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + + TP + ++ + L T+ DP CG GG + + + Sbjct: 517 DQRRGQYFTPYSIAYMMAKMQLSDGLPALTSGERDFITISDPACGAGGLVVAMAQAMLEA 576 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 G + +V +++P + + + + + + G++LS Sbjct: 577 GFN--PQKQMVAVCVDIDPVAAMMAYVQLALCGIPAM--------VIVGNSLS 619 >gi|282877469|ref|ZP_06286290.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310] gi|281300410|gb|EFA92758.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310] Length = 622 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 51/461 (11%), Positives = 140/461 (30%), Gaps = 55/461 (11%) Query: 137 CKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 F I +++ + V + ++E +I E TP + T +L Sbjct: 57 LNKFQNILFDVYGEEVSIEKLIELFEFVI---SPAEKEVNGAVYTPIGIRQYITKGVLHN 113 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 F+ + + D +CG GGF ++++ + G ++ E +++ Sbjct: 114 ----FEVARWSELQIADISCGCGGFFISLVDYIRSQINIEYSELYRNFFGVDI--EQYSI 167 Query: 255 CVAGMLIRR---LESDPRRDLSKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKW 305 +L+ + ++ + N+ + ++L+ D F + NPP+ Sbjct: 168 DRTKILLSLYAIQNGEDIQEFNFNLYRANSLAFDWNTIGVFRQNNGFDIVIGNPPYVGSS 227 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSS 363 + + K + + + F + G V + Sbjct: 228 K-----IADSSKKLLDN---WIVTRSGKADLYIPFFQIAIECINPNGIVGYI--TVNNFY 277 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRK-------- 414 NGRA R ++ EN ++ +F + T + ++ + Sbjct: 278 RSLNGRA------FRTYMSENRYDLKMIDFGAEQVFKGRSTYTCICFITRNQRSIKYTKS 331 Query: 415 TEERRGKVQLINATDL-WTSIRNEGKK--RRIINDDQRRQILDI---YVSRENGKFSRML 468 + + ++ + +L + + + ++ + ++I + K Sbjct: 332 SPKELDNIKETDYIELAYDDLSDSKGWLLQKPLIGSNIKKIESTGLPLGKCFDIKNGFAT 391 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 I + + ++E +I + P +I+ + + Sbjct: 392 LKNDVFVLNIVREDQSYYYTLASDGNIYQIEKEICRDAIKPNILKSETEIVDKTEKLL-- 449 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569 + + K + + + +++ F + +D Sbjct: 450 FPYTNINGKICPMTEKDFHTDYPFAYKYLLNFKDVLSTRDK 490 >gi|255535170|ref|YP_003095541.1| adenine specific DNA methyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255341366|gb|ACU07479.1| adenine specific DNA methyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 1063 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 139/480 (28%), Gaps = 122/480 (25%) Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 A ++ LE+F ++ + S L L +L+ + + IF D Sbjct: 223 AARYNDPTLETFSRLEAANLIPKSNPFLRKLFQDIAGFDLDDRLVWIVEELVQIFLATDV 282 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + KA + +F YE + ++ + + + TP Sbjct: 283 EKIMKNFGKATKMEDPIIHF------------------YETFLAQYDKNLRKVRGVWYTP 324 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRT-------------------------------L 209 + +V+ + D F G+ T + Sbjct: 325 QPIVNFIVRAVDDILKDEFNLQQGLADTSKTKIKVDSQIPDARSATGFRLVEKEVHRVQI 384 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVC--VAGM 259 DP GTG FL + + H+ + I +G EL ++A+ M Sbjct: 385 LDPATGTGTFLAETVKHIHSKFKGMEGMWSKYVKNDLIPRLNGFELLMASYAMAHLKMDM 444 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTG----------------------KRFHYCLS 297 L++ + I ++L ++ + Sbjct: 445 LLKETGYKSDDEQRFRIFLTNSL-EEAHPDSGTLFSSWLSDESTQANKIKKETPVMVVMG 503 Query: 298 NPPFGKKWEKDKDAVEKEHKN-----GELGRFGPGLPKISDGSML----FLMHLANKLEL 348 NPP+ + + ++ G + PK + + F + NK Sbjct: 504 NPPYSGESANKGKWIMDLMEDYKKEPGGKEKLKERNPKWINDDYVKFIRFAQYFINK--- 560 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI----------V----AL 393 NG G A + L N +R LL+ D I I + ++ Sbjct: 561 --NGTGILAFINPHGFLDNPTFRG----MRWNLLKEFDKIYTIDLHGNLKKKEISPDGSI 614 Query: 394 PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 ++F ++ L++ + K E G+V + K + +N++ I Sbjct: 615 DQNVFDIMQGVSVNLFVKTGNKKENELGQVL------HYDLFGKRDFKYQFLNENNISTI 668 >gi|163867444|ref|YP_001608643.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017090|emb|CAK00648.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1654 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 60/426 (14%), Positives = 117/426 (27%), Gaps = 52/426 (12%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 A ++ S I E +++ G + G+ +NN + S + Sbjct: 770 DAFHKELKNNLNSEIKQEEALEMLGQHLVTRPVFEALFDGNEFVQNN------AISQAME 823 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 I + D ++ ++ Y K + P + ++ +YE + + ++ Sbjct: 824 KILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFTKAFKKTTD 882 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP +VV + D F +S G ++ DP GTG F+T + Sbjct: 883 RLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSNLIKP 942 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTLSK------ 284 + H E+ + + + K+I T Sbjct: 943 EDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTFRMLEEKNL 1002 Query: 285 ------------DLFTGKRFHYCLSNPP--FGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + NPP FG+K D + R Sbjct: 1003 LQELFKENSEYLEHQKKLDIKVIFGNPPYSFGQKSANDNNPNTSYFILDNRIRKKYISNS 1062 Query: 331 IS----DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + + G V ++ + +G A G +R+ L+E Sbjct: 1063 TKIINRNKLYDSYIRAICWASDRIKERGVIGFVTNAGFI-SGHAMDG---LRKCLVEEFS 1118 Query: 387 IEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431 I L + +F + + IL ++ GK+ + D Sbjct: 1119 SLYIFHLRGNQRTSGELSRKEGGKIFGEGSRAPIAISILVKNPNAQQHGKIYFRDIGDYL 1178 Query: 432 TSIRNE 437 Sbjct: 1179 NREEKL 1184 >gi|313884106|ref|ZP_07817872.1| hypothetical protein HMPREF9257_1056 [Eremococcus coleocola ACS-139-V-Col8] gi|312620553|gb|EFR31976.1| hypothetical protein HMPREF9257_1056 [Eremococcus coleocola ACS-139-V-Col8] Length = 80 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 K P + HGQEL T+ + +++ + ++ R + TL+KD + + + Sbjct: 1 MKYPNSVHYHGQELNTTTYNLAKMNLILHSVPTEYMRLSNA-----DTLNKDWPSDEPYT 55 Query: 294 Y--CLSNPPFGKKWEKDKDAVEK 314 + L NPP+ KW D ++ Sbjct: 56 FDAVLMNPPYSAKWSADSTFLDD 78 >gi|110634699|ref|YP_674907.1| N-6 DNA methylase [Mesorhizobium sp. BNC1] gi|110285683|gb|ABG63742.1| N-6 DNA methylase [Chelativorans sp. BNC1] Length = 1038 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 61/428 (14%), Positives = 117/428 (27%), Gaps = 83/428 (19%) Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR---VMS 156 F+ +F D D + ++ + +I +F Sbjct: 239 FRQLGNDFNG---DLFSD-DLDAECRKITNKHI--EILDDFFSGTDMRHGQRAFWPYDFG 292 Query: 157 NI--------YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 I YEH ++ + + F TPR ++L D AL P + + Sbjct: 293 YIPIETISAIYEHFLK----DEDQRDGAFYTPR----FLAEVVL--DSALEDVGPLLGKK 342 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------------VPHGQELEPETHAVC 255 DP CG+G FL +A+ G + P + Sbjct: 343 FLDPACGSGIFLVGLFIRMAEEWKQANPKARYGRRARELMQVLRDSLFGVDKNPIACRIA 402 Query: 256 VAGMLIRRLE--------------------------SDPRRDLSKNIQQGSTLSKDLFTG 289 + + L+ S+NI + K Sbjct: 403 AFSLYLAYLDQLTPSDIQQLQKKGRALPLLTWDHAAPSTDEASSRNIHRVDFFQKGAPLP 462 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 + L NPP+G A ++ + + D + + K Sbjct: 463 QDADLVLGNPPWGSIAGDGTPAGIWCAESKK---------PLPDKQIA--VAFIWKAAEH 511 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATY 406 + G+ +L L N + E + R W + + ++ L LF Sbjct: 512 ASQTGKVCFLLPHGVLVNHGPVAVEFQ-RAW-VRQHTLRRVLNLADLRHFLFRDAIHPAI 569 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + + + + R G++Q W R E I D + + ++ + Sbjct: 570 VVEYAQGEPDLRAGRIQYWAPKADWMIARAEIINVSPI-DRKIITVAGLFDDLNKPDAPQ 628 Query: 467 MLDYRTFG 474 + +G Sbjct: 629 IWVRDYWG 636 >gi|256956669|ref|ZP_05560840.1| predicted protein [Enterococcus faecalis DS5] gi|300860462|ref|ZP_07106549.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|256947165|gb|EEU63797.1| predicted protein [Enterococcus faecalis DS5] gi|300849501|gb|EFK77251.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|315035632|gb|EFT47564.1| hypothetical protein HMPREF9501_01554 [Enterococcus faecalis TX0027] Length = 494 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 38/295 (12%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVADC 230 + F T + + + +L K TL +P G G L+ + + Sbjct: 9 KENGIFYTDKKLANKMVSL--------LKIDYKSEFTLIEPAVGEGHILSLIVKKYFIEN 60 Query: 231 GSHHKIPP----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +K G ++ E AVCV+ + E R+ NIQ+ L++ Sbjct: 61 KDKNKDEQAEFLENNIAGFDIRDEAIAVCVSKLNDLSEEYIQRKIEW-NIQKFDALNRKE 119 Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 K + Y +SNPP+ + D+ + + E S + + Sbjct: 120 LIEKFGTYDYVISNPPYVSRHNMDERTITALREKSEF---------CSKFNFDLYYYFFE 170 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNI 403 N G+ + +S + +A SGE +R +L++N L+E I+ ++ F Sbjct: 171 IGFDLWNRSGKIVYITPNSYI---KARSGEVMMR-YLIDNSLVETIIDYKDEMKFEGATT 226 Query: 404 ATYLWILSN-RKTEERRG-------KVQLINATDLWTSIRNEGKKRRIINDDQRR 450 T + + S K + KV + + + + ++ Sbjct: 227 YTAISVFSTGNKVLRVKNNKGINLVKVTYRDLMEKYNYMIYSHDFLTEFQEEFID 281 >gi|210630625|ref|ZP_03296528.1| hypothetical protein COLSTE_00413 [Collinsella stercoris DSM 13279] gi|210160400|gb|EEA91371.1| hypothetical protein COLSTE_00413 [Collinsella stercoris DSM 13279] Length = 532 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 33/268 (12%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 S+ F+TP+ V ++ D + + DP CG G + + +A Sbjct: 26 NRSKAIGQFLTPKQVYDAMIGDIMQNFDLRQDS----VINVIDPFCGDGRLIAAFLTVLA 81 Query: 229 DCGSHHKIPPI--LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 +H K + + T +C A +D ++ N Q D Sbjct: 82 TANNHPKEVVVTAWDIDEAIINAATETICEA-------ATDAPFEVVVNTQVMDAFDCDQ 134 Query: 287 FTGKRFHYCLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPG------LPKIS------ 332 F C++NPP+ K + + A + E++ + G P++ Sbjct: 135 ALYGSFDICVTNPPWSSTKSLKANAFATKDEYEAYQTLTNAYGRLLTERYPEVKGGKSFG 194 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 G++ G IV+ SS A + + +RR +L++ + ++ Sbjct: 195 AGALNLSRFGLALALRLVKESGICGIVMPSSL----AADTSSAVLRRSMLDHFSLRSLHY 250 Query: 393 LPT--DLFFRTNIATYLWILSNRKTEER 418 P LF + A +L + ++ Sbjct: 251 YPAELKLFAGADQAAIYLVLDANRNDKP 278 >gi|168187409|ref|ZP_02622044.1| DNA modification methyltransferase [Clostridium botulinum C str. Eklund] gi|169294713|gb|EDS76846.1| DNA modification methyltransferase [Clostridium botulinum C str. Eklund] Length = 590 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 91/329 (27%), Gaps = 65/329 (19%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRV---------MSNIYEHLIRRFGSEVSEGAEDF 177 L K LY I + + S IY +L + + Sbjct: 6 LNKVNELYNIINAPIDKIFKTMAIENYKKVLNLGKEKFSEIYINL---KEKDKKKEKGVV 62 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234 TP+++ ++ + + DP+CG G L + + Sbjct: 63 YTPKEIAAYMLENVVTKEH----IISNPYIKILDPSCGCGDILIVCYEKLKKIYIKNLQY 118 Query: 235 ---------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 K +G +++ + + +KN++ Sbjct: 119 INEVNNTKLKEEDIPKHIIENNLYGFDIDEVAIKILAIDLF-----QVSGYFCNKNLKCM 173 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L +F L NPP+ V+KE+ F D S F Sbjct: 174 DFLLDKC--DSKFDIILGNPPY-----VGHKCVDKEYSKKLKSSFKEIYKDKGDISYCFF 226 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 N L + SP SGE E+R+ L + + IV F+ Sbjct: 227 QQAINNLIREGKLSFITSRYFMESP-------SGE-ELRKVLKDVCSLYTIVD-----FY 273 Query: 400 ------RTNIATYLWILSNRKTEERRGKV 422 T + + L N++ + KV Sbjct: 274 GIRPFKNTGVDPVIIFLINKQDAKEEIKV 302 >gi|170717580|ref|YP_001784665.1| type I restriction-modification system methyltransferase subunit-like protein [Haemophilus somnus 2336] gi|168825709|gb|ACA31080.1| Type I restriction-modification system methyltransferase subunit-like protein [Haemophilus somnus 2336] Length = 122 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 18/53 (33%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53 M + L IW+ A ++ G DF + +L R + E Sbjct: 1 MIISIQQRSELHRQIWQIANEVRGAVDGWDFKQYVLGTLFYRFISEKFEKYND 53 >gi|254167636|ref|ZP_04874487.1| Type I restriction enzyme R protein N terminal domain protein [Aciduliprofundum boonei T469] gi|289597007|ref|YP_003483703.1| protein of unknown function DUF450 [Aciduliprofundum boonei T469] gi|197623445|gb|EDY36009.1| Type I restriction enzyme R protein N terminal domain protein [Aciduliprofundum boonei T469] gi|289534794|gb|ADD09141.1| protein of unknown function DUF450 [Aciduliprofundum boonei T469] Length = 995 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 63/477 (13%), Positives = 125/477 (26%), Gaps = 136/477 (28%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 LR E + E + + + A YN+ + T Sbjct: 236 IFLRMCEDRGVERYGRLLEAAEEDVYAALL--KLYQEADEK-YNSGLFHFKPEKGRATEP 292 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMS 156 + I + + +L +I K + + ++ Sbjct: 293 D-------------DITPNIKI--------DSKVLKRIIKGLYYPESPYEFSVISPEILG 331 Query: 157 NIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 +YE + + EV + + TP+ +V+ + Sbjct: 332 QVYEQFLGKVIRLTKGHRAKVEEKPEVKKAGGVYYTPQYIVNYIVENTVGKLCKGKTPKE 391 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG-----------------------------SHH 234 + D CG+G FL A + + Sbjct: 392 MEKIKILDSACGSGSFLLGAYTRLLEEHLRYYTSAKNKKRYRDRIYQDKNGEWHLTIREK 451 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQG 279 K + +G +++ + V +L++ LE + + DL NI+ G Sbjct: 452 KRILLNSIYGVDIDEQAVEVTKLSLLLKVLEGENKDALERQQKLWRERALPDLGNNIKCG 511 Query: 280 STL--------------------------SKDLFT----GKRFHYCLSNPPF-GKKWEKD 308 ++L + F F + NPP+ ++ Sbjct: 512 NSLVGTDYYASGVQMTLFDEERERINAFDWEKEFPEVMKNGGFDVIIGNPPYVRQEMLGK 571 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 KEH G +D + F+ L+ G A Sbjct: 572 LKNYFKEHYEVYHG--------TADLYVYFIERSMKLLKPNGIYGIIVA--------NKW 615 Query: 369 RAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 + +R WL + ++E I+ LP +F + + I+ K + V Sbjct: 616 MRANYGKPLREWLKKWQIVE-ILDFGDLP--VFKKATTYPCIMIVKASKPRKYFWAV 669 >gi|118497108|ref|YP_898158.1| hypothetical protein FTN_0509 [Francisella tularensis subsp. novicida U112] gi|194323405|ref|ZP_03057182.1| adenine specific DNA methyltransferase [Francisella tularensis subsp. novicida FTE] gi|118423014|gb|ABK89404.1| conserved protein of unknown function [Francisella novicida U112] gi|194322260|gb|EDX19741.1| adenine specific DNA methyltransferase [Francisella tularensis subsp. novicida FTE] Length = 1130 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 78/589 (13%), Positives = 169/589 (28%), Gaps = 132/589 (22%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 V + + + F L L N++ I DN Sbjct: 225 YHDEVLDTFSRQEAAE------KIPKSNPF-------LRRLFDYVAGTNIDDRIKHTVDN 271 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 +F D +++ ++ +F YE + + S++ Sbjct: 272 LADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDSKL 313 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------------------- 208 + + TP+ VV + + + F S G+ T Sbjct: 314 RKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRSKSGYKQ 373 Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQELEPE 250 + DP GTG FL +A+ + + + I +G EL Sbjct: 374 IEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELLMA 433 Query: 251 THAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------------------SKD 285 ++A+ ML+ + + +I ++L + Sbjct: 434 SYAMAHLKLDMLLTDTGYKPKSSQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEANQ 493 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---SDGSMLFLMHL 342 + + NPP+ + + ++ + + +D + F+ + Sbjct: 494 IKKDTPVMVVMGNPPYSGISSNTGEWITSLIEDYKYVDGVHFNERKHWLNDDYVKFMRYG 553 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 +E NG G A + L N +R LL+ D I + L + Sbjct: 554 QYYIEK--NGSGVLAFINPHGFLDNPTFRG----MRYSLLKTYDKIYT-IDLHGN----- 601 Query: 402 NIATYLWILSNRKTEERRG----KVQ-LINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 S +K G V ++ + ++ KK + + D+Y Sbjct: 602 ---------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNNELAEVYH---YDLY 649 Query: 457 VSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 R + +F + G+++++ +P D + A E + L P + + Sbjct: 650 GKRNDKYEFLSQNSLSSIGFKKVEYSKPYYFFIPKDDSQRASYEKGFSVVSLFPENVTGI 709 Query: 516 LDILK--PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 + + + + + K+ + K K K++ + Sbjct: 710 VTMGDSFAIAETKQQLKDRLEDFLQIEKTEDNLKQKYKLGKNYAKWILE 758 >gi|62259857|gb|AAX77871.1| unknown protein [synthetic construct] Length = 360 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 97/331 (29%), Gaps = 58/331 (17%) Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG 302 + E V M++ D I L + RF L+NPPFG Sbjct: 20 DDKHMLEMARVSKMNMIMHG-------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFG 72 Query: 303 KKWEKDKDAVEKEHKN----------------------------GELGRFGPGLPKIS-D 333 KD V +E K G+ R +IS Sbjct: 73 TNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISVA 132 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +LF+ + L+ GGR IVL L + + R + I IV+L Sbjct: 133 TEVLFVERCLDLLK----AGGRMGIVLPEGVLNSSNLQ----KAREYFESRAKILLIVSL 184 Query: 394 PTDLFFRTN--IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 P DLF + + T L L + + + +++ + +K + Sbjct: 185 PQDLFVSSGATVKTSLVFLKK----------FTVEEQEQYETVKTQAEKEAEQKYQPQLL 234 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 + + E + R + + LD+T + E ++ Sbjct: 235 EIQQKIDFEKSIKQHITKLRKALKTK-TAKNKENLQLTLDETIVEHTEYKKKVKQYKAQL 293 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 + + Q I E + E K+ Sbjct: 294 KELEAKQQEEAKQLIKQKFDYEIPIAEIEKA 324 >gi|308064129|gb|ADO06016.1| adenine specific DNA methyltransferase [Helicobacter pylori Sat464] Length = 1203 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NQNIKLLDFATGTGTFLLEAFRKALEMMKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y NP F + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIVAYRGLNPIFETELLNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495 >gi|126659143|ref|ZP_01730282.1| type I restriction-modification system, M subunit, putative [Cyanothece sp. CCY0110] gi|126619550|gb|EAZ90280.1| type I restriction-modification system, M subunit, putative [Cyanothece sp. CCY0110] Length = 1033 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 101/312 (32%), Gaps = 60/312 (19%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S++YE + + EG TP +V +L DD + + DP C Sbjct: 329 ISSVYEEFVSK-----KEGQGVHYTPEFIVDFILDGVLPWDDEEWDLK------ILDPAC 377 Query: 215 GTGGFLTDAMNHV-----ADCGSHH-----KIPPILVPHGQELEPETHAVCVAGMLIRRL 264 G+G FL A + + K G +++ E V + L Sbjct: 378 GSGIFLVKAYQRLIYRWEKAHNKNITSDILKSLLENNFLGVDIDREAIRVASFSFYLMML 437 Query: 265 ESDPRRDLSKNIQQGSTLSK------DLFTGK-----------RFHYCLSNPPFGKK--W 305 ++ R+ +N + TL D F + L N P+GK Sbjct: 438 DNIDPRNYWENEVKFPTLRNKKLIAADFFAEDIEGFRTEEDSGTYDLVLGNAPWGKNSIT 497 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 +K K+ +K + N IS G++ +K G +++ + L Sbjct: 498 KKAKEWTKKYNWNDC----------ISYGNIAP--FFLSKAVKLTKDNGYISMMQPAGTL 545 Query: 366 -FNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSNRKTEERRGK 421 FN + ++R L + IV L LF T + L N Sbjct: 546 IFNQGDKN--QQLRFKLFSETKVSEIVDLSALRFGLFKNAISPTCIITLEN--IASNNDS 601 Query: 422 VQLINATDLWTS 433 V + L+ + Sbjct: 602 VLYLCPKILYKN 613 >gi|307638127|gb|ADN80577.1| type II S restriction enzyme M protein [Helicobacter pylori 908] Length = 599 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 69/449 (15%), Positives = 139/449 (30%), Gaps = 113/449 (25%) Query: 40 LLRRLECA------LEPTRSAVREKYLA----FGGSNIDLESFVKVAGYSFY-----NTS 84 ++R++ LE R ++ D E Y + Sbjct: 186 FIKRVDTLSLSDEDLERIREKKNQEIEDCLTRLNNDIYDKEKNFLSEHNRVYLVIASIIA 245 Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG------LLYKICK 138 +S L + + +L+S + + I L + LL + + Sbjct: 246 NLGISNLVAPLNKEDLKSSDENGERDGDKILRKIRSFLKHKHLSEEKERSIISLLEPLLR 305 Query: 139 N----------------FSGIE-----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 N FS I + + ++ + R G + + Sbjct: 306 NENNNKAINGESRLKRCFSEIVDSLGVYYKIGLSTDFTGKLFNEMYRWLGFTQDKLNDVV 365 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------- 227 +TP L L D+ ++D G G L +MN + Sbjct: 366 LTPPYAATLLARLSKVNKDSF----------VWDFATGNAGLLVASMNLMIEDAKKRITS 415 Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KD 285 + G E+ P+ H + V M++ D S I ++LS D Sbjct: 416 PEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG-------DGSSQILNQNSLSGFD 468 Query: 286 LFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + + + NPP+ M+F+ Sbjct: 469 GKVNDKEFKANAFVLNPPYSASGNG----------------------------MVFVEQA 500 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401 K++ G A++++ SS G + E +R +LE + A + +P DLF + Sbjct: 501 LAKMQS-----GYASVIIQSSA---GSGKAKEYNVR--ILEKHTLLASIKMPLDLFIGKS 550 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL 430 ++ T++++ + + + +V+ IN ++L Sbjct: 551 SVQTHIYVFRVNEKHDAKQRVKFINFSNL 579 >gi|254489560|ref|ZP_05102762.1| restriction methylase [Roseobacter sp. GAI101] gi|214041730|gb|EEB82371.1| restriction methylase [Roseobacter sp. GAI101] Length = 575 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 33/242 (13%) Query: 133 LYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 L + F I + +Y L+ + ++ F +P + + AL Sbjct: 87 LSDLAAQFGEVIANCNAQFAAYEVGMLYTSLLPKSAKSLN---GIFYSPPAISGMLLALA 143 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPILVPHGQE 246 D + +P+CG G LT + S G E Sbjct: 144 NDAKADWTRH------LFLEPSCGGGVILTAIAERMIDAIKRQPSSEILAHLSKNLVGYE 197 Query: 247 LEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++P + L +D ++ TL+ + ++F + + NPPFG+ Sbjct: 198 IDPFGAWLAQVSIDFLALPFCTDEDSRFPVIVRCTDTLAVN--DNEQFDFVIGNPPFGRT 255 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ E FG ++ L ++ GG V +S Sbjct: 256 KLTDEQRRHFERST-----FGH-------ANLYAL--FWDQALRLVRLGGTIVFVTPTSF 301 Query: 365 LF 366 L Sbjct: 302 LS 303 >gi|319941355|ref|ZP_08015684.1| DNA helicase restriction enzyme Type III R subunit [Sutterella wadsworthensis 3_1_45B] gi|319805116|gb|EFW01943.1| DNA helicase restriction enzyme Type III R subunit [Sutterella wadsworthensis 3_1_45B] Length = 1661 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 70/570 (12%), Positives = 161/570 (28%), Gaps = 74/570 (12%) Query: 41 LRRLECAL-EPTRSAVREKYLAFGGS-------NIDLESFVKVAGYSFYN----TSEYSL 88 ++ + L +PT++ RE + +F ++ + V++ G + +++ Sbjct: 764 IKHINDVLKDPTKTKSREAFESFKKELKATLNDSLTDDEIVEMLGQHVVTQPILDALFTI 823 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 T T+ + ++ IA + + LE Y+ +N + Sbjct: 824 QTSEGTSYEFSKQNPIAIAMTSMMDSLDKESMRLATKSLED---FYRSVRN-RTRTIKTS 879 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK-ESPGMIR 207 ++ ++E + + E TP ++V + D F Sbjct: 880 ADRQLLIKELFEKFFKAAFPKQQEKLGIVYTPIEIVDFINQSVADLLKKEFNCSIADDGI 939 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLE 265 + DP GTG F+ M H E+ P + V + + L Sbjct: 940 HILDPFSGTGTFIARLMQSGLIPTDRLPNKFEHELHANEIVPLAYYVASMNIEGVFHELC 999 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG------------------KRFHYCLSNPPFGKKWEK 307 + ++ + T + + + + + NPP+ + Sbjct: 1000 PNEVYQPNRVMIWTDTFANNRQSSIFSTTLGENNARLVELNRQDIRVIIGNPPYSVGQDN 1059 Query: 308 DKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFLMHLANKLELPPNGG--GRAAIVLSS 362 D + EH + R + + + L+ ++ G G V ++ Sbjct: 1060 ANDDNQNEHYDELDDRIAKTYAAKTEAVNKNSLYDSYIRAYRWASDRIGNKGIIGFVTNA 1119 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYL 407 + + A +R+ L E + L + +F + + Sbjct: 1120 GWIDSNSADG----MRKCLTEEFSSIYVYHLKGNQRTSGERSRQEGGKVFGEGSRAPVAI 1175 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKR--RIINDDQRRQIL-DIYVSR---EN 461 L RGK+ + D T R R + Q I+ D + + Sbjct: 1176 VFLVKNPASTERGKIFFHSVDDYLTREEKLACLREDRSMAYTQTNVIVPDAHGDWLNQRD 1235 Query: 462 GKFSRMLDYRTFGYRRIKVL-------RPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514 +++ + + + + R S++ + + E T Sbjct: 1236 DSYAKFMRVDGKKTKESSIFLNYSNGIKSGRDSWVYNSSRNRLCENIKTSINYFNACVDN 1295 Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNE 544 L + + + E Sbjct: 1296 LLSNKDYLPIKDDAKIKWNETQDTLFQKKE 1325 >gi|108563726|ref|YP_628042.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1] gi|107837499|gb|ABF85368.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1] Length = 1201 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 174 RYLKDALIAYQQDDQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 231 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +E+ LL +I + + +++ Sbjct: 232 KINLDNVRSSIPKNFAVIREMADFLKKLDEIEEIQWLLNEILSSINHVDMDSILKDLNDD 291 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 292 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 351 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL A + + +G E +A Sbjct: 352 NENIKLLDFATGTGTFLLKAFRKALEMRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 411 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y +P F K+ + ++ Sbjct: 412 IAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP---SEIVAYRGLSPIFEKELKSAQE 468 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E G ++G + Sbjct: 469 IKKDEKILIITGNPPYSGASSNEGLFEW 496 >gi|290474589|ref|YP_003467469.1| hypothetical protein XBJ1_1563 [Xenorhabdus bovienii SS-2004] gi|289173902|emb|CBJ80689.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 228 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 18/172 (10%) Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 TI + E+A + +I + FS + L P + +++ L + + F TP Sbjct: 55 KTINKYERADV-DRIVQLFSHVVLGLVQEPGDFLGSVFMQL-----ELGDKDLQQFFTPW 108 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 V + + L L + P TL +P G G A + + + G L Sbjct: 109 SVARMMAQMQLQDAAGLLQTQP--FVTLCEPCVGAGCITLAAADVLRELGHD--PLCSLW 164 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + +++P + + + + I G+ L R+ Sbjct: 165 VYAIDIDPLAAVMAYIQFSLTGIPAA--------ITIGNALHDGGDKRTRYT 208 >gi|163868211|ref|YP_001609419.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017866|emb|CAK01424.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1647 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 66/442 (14%), Positives = 129/442 (29%), Gaps = 59/442 (13%) Query: 44 LECALEPTR-------SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 L+ L + A ++ + +I E +++ G + G+ Sbjct: 760 LKDILSDEKGKARCAFEAFHKELKSNLNDSITQEEALEMLGQHLVTRPVFEALFEGNEFV 819 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +NN S S + I + D + + Y K + P + ++ Sbjct: 820 QNN------SISQAMERILAELDKTDIKQESLELQGFYNSVKFRASGITEPQARQNLII- 872 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCG 215 +YE + + ++ TP +VV + D F +S G ++ DP G Sbjct: 873 KLYEDFFSKAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTG 932 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSK 274 TG F+T + + H E+ + + + K Sbjct: 933 TGTFITRLLQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSIMKGEYIPFK 992 Query: 275 NIQQGSTLSK------------------DLFTGKRFHYCLSNPP--FGKKWEKDKDAVEK 314 +I T + NPP FG++ E D + Sbjct: 993 HIGLTDTFRMLEEKNLLQKLFKENSEYLEHQKKLNIQVIFGNPPYSFGQRSENDNNPNTS 1052 Query: 315 EHKNGELGRFGPGLPKIS--DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRA 370 E R L + + L+ ++ + G V ++S + NG + Sbjct: 1053 YPILDERIREKYILKSTKIINRNKLYDSYIRAIRWASDRIDNAGVIGFVTNASFI-NGSS 1111 Query: 371 GSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKT 415 G +R+ L+E I L + +F + + IL Sbjct: 1112 MDG---LRKCLVEEFSSLYIFHLRGNQRTSGEISRKEGGKIFGEGSRAPIAISILVKNPN 1168 Query: 416 EERRGKVQLINATDLWTSIRNE 437 ++ GK+ + D Sbjct: 1169 AQQHGKIYFRDIGDYLNREEKL 1190 >gi|124004980|ref|ZP_01689823.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134] gi|123989658|gb|EAY29204.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134] Length = 503 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 82/255 (32%), Gaps = 25/255 (9%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 ++++ D+ TP ++ + + + + + DP CG G FL Sbjct: 1 MLKKSADIQG--YIDYSTPSFIIEKILDDIDFGQQKVI-----LGKKILDPACGAGRFLI 53 Query: 222 DAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +A V + + +G +++ C+ M ++ + K I + Sbjct: 54 EAAKRVIAISPKEDIVNNLEQLYGWDIDGAAIEECIENMN-HLIKPLNIQVNWK-IYELD 111 Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 +L + RF + + NPP+ + D+ + + + G +D M F Sbjct: 112 SLHYIEHPEEVRFDFIVGNPPYIRIQHLDETQRKYIQTHYSFCKNG-----STDIYMAFF 166 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLF 398 L G ++ ++ + A +R I I +F Sbjct: 167 ELCHKLLTPT----GVCGLITPNTYFYTQTAQ----AMRDAFAHLKNIRQITNYGKIQVF 218 Query: 399 FRTNIATYLWILSNR 413 + + I + + Sbjct: 219 QNATTYSAITIFTKK 233 >gi|301019050|ref|ZP_07183262.1| N-6 DNA Methylase [Escherichia coli MS 196-1] gi|299882408|gb|EFI90619.1| N-6 DNA Methylase [Escherichia coli MS 196-1] Length = 402 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 292 FHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + NPPF +W D + E + +P ++F+ + L+ Sbjct: 102 FDVAVCNPPFTLPEWRDDYFKIISEIGADKYISVSKYVP----AEIIFISQVIRFLKK-- 155 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG A I+L +F R G +RR+LL I ++ LP ++F RT T++ I Sbjct: 156 --GGEAGIILPDG-IFTARKFIG---LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 209 Query: 411 SNRKTEERRGKVQL 424 + + K+QL Sbjct: 210 NKKIMPHH--KIQL 221 >gi|157159784|ref|YP_001457102.1| DNA methylase family protein [Escherichia coli HS] gi|157065464|gb|ABV04719.1| putative DNA Methylase family [Escherichia coli HS] Length = 402 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 292 FHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + NPPF +W D + E + +P ++F+ + L+ Sbjct: 102 FDVAVCNPPFTLPEWRDDYFKIISEIGADKYISVSKYVP----AEIIFISQVIRFLKK-- 155 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG A I+L +F R G +RR+LL I ++ LP ++F RT T++ I Sbjct: 156 --GGEAGIILPDG-IFTARKFIG---LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 209 Query: 411 SNRKTEERRGKVQL 424 + + K+QL Sbjct: 210 NKKIMPHH--KIQL 221 >gi|120553351|ref|YP_957702.1| restriction modification system DNA specificity subunit [Marinobacter aquaeolei VT8] gi|120323200|gb|ABM17515.1| restriction modification system DNA specificity domain [Marinobacter aquaeolei VT8] Length = 588 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 65/202 (32%), Gaps = 33/202 (16%) Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 L + R + ++ LF+ + S IR L+ N+ ++A+V LP T Sbjct: 253 LAVLRVARECTSRGVVCVAPGVLFSRASMS----IREELINNNWLDAVVGLPKGTLTNTA 308 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462 + L ++ + ++ + + A++ R + ++ + R + Sbjct: 309 VPPVLLVIDKHREKDSP--IAFVEASE------------RQLAEE-IGDLAQAIRDRRDS 353 Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522 + ++R + + +KL L + LD + + Sbjct: 354 ENGTFASNLDIQKNDY-------------DLTISRYKPGLAAQKLRRLKNTVSLDGVAEI 400 Query: 523 MQQIYPYGWAESFVKESIKSNE 544 + + A+ +I Sbjct: 401 V-RAQSLKDADDNPDAAIFLEA 421 >gi|15612337|ref|NP_223990.1| hypothetical protein jhp1272 [Helicobacter pylori J99] gi|4155873|gb|AAD06844.1| putative [Helicobacter pylori J99] Length = 1164 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 107/327 (32%), Gaps = 34/327 (10%) Query: 42 RRLECALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97 R L+ AL + V + F + SF + +F T YSL + L + Sbjct: 173 RYLKDALIAYQKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFLAKLNHPFEK 231 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPD----TVPD 152 +L + +S N I E DF + +++ LL +I + +++ P Sbjct: 232 IDLNNVRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILILINHVDMGPIIKDLNDDK 291 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204 + YE + + ++ E + TP VV L FK++P Sbjct: 292 DPYLHFYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALDN 351 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254 L D GTG FL +A + + +G E +A+ Sbjct: 352 KNIKLLDFATGTGTFLLEAFRKALEVRKTSDGGASTKEDKYQNLLKQFYGFEYLIAPYAI 411 Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + + + + + I +TL + + Y NP F K+ ++ Sbjct: 412 AHLNLSQAFKEEFKKPLKENDTLKIILTNTLIQP---SEIIAYRGLNPIFEKELSNAQEI 468 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G + G + Sbjct: 469 KKNENILIITGNPPYSGASENKGLFEW 495 >gi|309805400|ref|ZP_07699448.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308165285|gb|EFO67520.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] Length = 333 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F++ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLKPS----GYAFLIVPKMILSGKDAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|300723990|ref|YP_003713304.1| hypothetical protein XNC1_3132 [Xenorhabdus nematophila ATCC 19061] gi|297630521|emb|CBJ91186.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 153 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 17/141 (12%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L ++ + F TP V + + L L + P TL +P Sbjct: 10 DFLGSVFMRL-----ELDNKDLQQFFTPWSVARMMAEMQLHDAAGLLQTQP--FVTLCEP 62 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G A + + + G L + +++P + + + + + Sbjct: 63 CCGAGCITLAAADVLRELGHD--PLCSLWVYAIDIDPLATVMAYIQLSLSGIPAA----- 115 Query: 273 SKNIQQGSTLSKDLFTGKRFH 293 + G+ L D R+ Sbjct: 116 ---VTIGNALHDDGNKRTRYT 133 >gi|163816134|ref|ZP_02207502.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759] gi|158448554|gb|EDP25549.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759] Length = 684 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 86/300 (28%), Gaps = 50/300 (16%) Query: 132 LLYKICKN-------FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRD 182 LL I ++ S + D L+ ++ + A + TP + Sbjct: 150 LLDDIIQDKKEIETWISEHDDMLDISYKFQKGEDVLGLLYMSVRDIGVRKAAGSYFTPTE 209 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V + K + + DP CGTG FL V I Sbjct: 210 IVRNMIMDISQDLGGGLK-----GKKVLDPCCGTGNFLIQFSEDV----------DICNI 254 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---------SKDLFTGK-RF 292 H + + + + + + RL +I+ S+D + + Sbjct: 255 HAFDTDMLSVQLARFNLALTRLAGRENVKAEGDIRTICENVECRDFLAKSEDRISNTVNY 314 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + NPP+G K++ +E+ GR +F+ L Sbjct: 315 DVIIGNPPWGYKFDSAAQKALRENYKTAAGRGAESY-------DIFVERALGLLGDD--- 364 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G A VL + L S R+ + + + L ++F L Sbjct: 365 -GMLAFVLPEAVLDVRN----HSAARQIIANTTNVRRVRFL-DNVFHGVQCPAVAMHLKK 418 >gi|15646081|ref|NP_208263.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori 26695] gi|2314649|gb|AAD08512.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori 26695] Length = 679 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 103/302 (34%), Gaps = 71/302 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + R G + + +TP V L L D+ ++D G Sbjct: 344 GKLFNEMYRWLGFTKDQLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L +MN + + G E+ + H + V M++ Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILSDIHTLAVLNMILMG- 452 Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D S I LS K + + + NPP+ Sbjct: 453 ------DGSSQILNQDGLSGFDGKVNNEAFKANAFVLNPPYSASGNG------------- 493 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 M+F+ K++ G A++++ SS G + E +R Sbjct: 494 ---------------MVFVEQALEKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528 Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 +LE + A + +P DLF +++ T++++ + + + +V+ IN ++ + N K Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588 Query: 440 KR 441 + Sbjct: 589 AK 590 >gi|108763675|ref|YP_633998.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622] gi|108467555|gb|ABF92740.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622] Length = 553 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 84/258 (32%), Gaps = 44/258 (17%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 E L+ +F S + F TP + AL L G T+ DP+CG G Sbjct: 44 EEKLVLQFPSLDRKAVGAFFTPAPLAERTLALALQHVG-------GGPLTVVDPSCGAGA 96 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 FLT A ++ P + G EL+PE +C A R ++ Sbjct: 97 FLTAAS----------RLRPGVRLCGLELDPEVARLCQA------------RVPEATVRA 134 Query: 279 GSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 G L + NPP+ KD L +P S Sbjct: 135 GDALRDGLEPLLATTPPDHQELWVGNPPYNGTSSVLKDPGTYARLRALLP--LALMPGTS 192 Query: 333 -DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 F + +A G A ++ +S L + +R+ LLE + +V Sbjct: 193 LRDDFAFFLLVAAHRLATRP--GALAFIIPASFL----DAFMYAPLRQSLLETLSLREVV 246 Query: 392 ALPTDLFFRTNIATYLWI 409 L F T + T + + Sbjct: 247 DLGPGAFAGTQVRTCITV 264 >gi|296270692|ref|YP_003653324.1| putative type II DNA modification enzyme [Thermobispora bispora DSM 43833] gi|296093479|gb|ADG89431.1| putative type II DNA modification enzyme [Thermobispora bispora DSM 43833] Length = 1338 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 46/204 (22%) Query: 126 RLEKAGLLYKI--CKNFSGIELHPDTVPDR-----VMSNIYEHLIR-------------- 164 L LL + + P V + + ++YE L+ Sbjct: 395 TLPNNALLTAVRKMCTVRDKDGRPRDVDFQHLGAEELGSVYESLLELEPYADTNGTGPRF 454 Query: 165 ----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGT 216 + + + TP ++ LDP +S T+ DP CG+ Sbjct: 455 KLREKVSGNDRKTTGSYYTPAPLIEALLDSALDPVIDEHAKSGNPDDLLKITVCDPACGS 514 Query: 217 GGFLTDAMNHVADCG----------------SHHKIPPILVPHGQELEPETHAVCVAGML 260 G FL A +A + +G ++ P + + Sbjct: 515 GHFLVAAARRIAKRYAAMVTGESEPVPSAVREAMRKVVARCIYGVDINPLAAELAKVSLW 574 Query: 261 IRRLES-DPRRDLSKNIQQGSTLS 283 I LE P L +I+ G++L Sbjct: 575 IESLEPGKPLAFLDAHIKVGNSLL 598 >gi|298345337|ref|YP_003718024.1| putative type I site-specific deoxyribonuclease [Mobiluncus curtisii ATCC 43063] gi|315655756|ref|ZP_07908654.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|298235398|gb|ADI66530.1| possible type I site-specific deoxyribonuclease [Mobiluncus curtisii ATCC 43063] gi|315489820|gb|EFU79447.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 179 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 23/163 (14%) Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILS 411 RA IV + LF + + E ++RR L+EN +E I+ +P+ +F + ++T + + + Sbjct: 2 SRACIVPNG-VLFRSNSKAYE-QLRRELVENQKLETIIYMPSGVFKPYS-GVSTAILVFT 58 Query: 412 NRKTEERRGKVQLINAT-DLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464 V L N D +T + D IL + R + Sbjct: 59 KT-DAGGTDDVWLYNMEGDGYTLDDKRDPDEKH---DDIPDILSRWHNLGAERDRARTEK 114 Query: 465 SRMLDY-------RTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 S ++ F + + R+ + + L L Sbjct: 115 SFLVSKSEIVENGYDFSFNKYTETVYERVEYPPTEEILDDLAD 157 >gi|56707657|ref|YP_169553.1| hypothetical protein FTT_0522 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670128|ref|YP_666685.1| hypothetical protein FTF0522 [Francisella tularensis subsp. tularensis FSC198] gi|56604149|emb|CAG45155.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320461|emb|CAL08538.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] Length = 325 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 95/324 (29%), Gaps = 58/324 (17%) Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDK 309 V M++ D I L + RF L+NPPFG KD Sbjct: 1 MARVSKMNMIMHG-------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDN 53 Query: 310 DAVEKEHKN----------------------------GELGRFGPGLPKIS-DGSMLFLM 340 V +E K G+ R +IS +LF+ Sbjct: 54 SKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISVATEVLFVE 113 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + L+ GGR IVL L + + R + I IV+LP DLF Sbjct: 114 RCLDLLK----AGGRMGIVLPEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVS 165 Query: 401 TN--IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + + T L L + + + +++ + +K + + + Sbjct: 166 SGATVKTSLVFLKK----------FTVEEQEQYETVKTQAEKEAEQKYQPQLLEIQQKID 215 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 E + R + + LD+T + E ++ + Sbjct: 216 FEKSIKQHITKLRKALKTK-TAKNKENLQLTLDETIVEHTEYKKKVKQYKAQLKELEAKQ 274 Query: 519 LKPMMQQIYPYGWAESFVKESIKS 542 + Q I E + E K+ Sbjct: 275 QEEAKQLIKQKFDYEIPIAEIEKA 298 >gi|208778901|ref|ZP_03246247.1| adenine specific DNA methyltransferase [Francisella novicida FTG] gi|208744701|gb|EDZ90999.1| adenine specific DNA methyltransferase [Francisella novicida FTG] Length = 1078 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 83/590 (14%), Positives = 171/590 (28%), Gaps = 134/590 (22%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 V + + + F L L N++ I DN Sbjct: 225 YHDEVLDTFSRQEAAE------KIPKSNPF-------LRRLFDYVAGTNIDDRIKHTVDN 271 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 +F D +++ ++ +F YE + + S++ Sbjct: 272 LADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDSKL 313 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------------------- 208 + + TP+ VV + + + F S G+ T Sbjct: 314 RKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRSKSGYKQ 373 Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQELEPE 250 + DP GTG FL +A+ + + + I +G EL Sbjct: 374 IEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELLMA 433 Query: 251 THAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------------------SKD 285 ++A+ ML+ + + +I ++L + Sbjct: 434 SYAMAHLKLDMLLTDTGYKPKSSQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEANQ 493 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---SDGSMLFLMHL 342 + + NPP+ + + K ++ + + +D + F+ + Sbjct: 494 IKKDTPVMVVMGNPPYSGISSNTGEWITKLIEDYKYVDGVHFNERKHWLNDDYVKFMRYG 553 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401 +E NG G A + L N +R LL+ D I + L + Sbjct: 554 QYYIEK--NGSGVLAFINPHGFLDNPTFRG----MRYSLLKTYDKIYT-IDLHGN----- 601 Query: 402 NIATYLWILSNRKTEERRG----KVQ-LINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 S +K G V ++ + ++ KK + + D+Y Sbjct: 602 ---------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNNELAEVYH---YDLY 649 Query: 457 VSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515 R N +F + G+++++ L+P D + E + L P + + Sbjct: 650 GKRNNKYEFLIQNSLSSIGFKKVEYLKPYYFFIPKDDSQRTNYEKGFSVVSLFPENVTGI 709 Query: 516 L---DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562 + D + E F++ + K K K K++ + Sbjct: 710 VTMGDSFAIAESKQQLQDKLEDFLQTEKTEDNLKQ-KYKLGKNYAKWILE 758 >gi|160932540|ref|ZP_02079930.1| hypothetical protein CLOLEP_01378 [Clostridium leptum DSM 753] gi|156868499|gb|EDO61871.1| hypothetical protein CLOLEP_01378 [Clostridium leptum DSM 753] Length = 289 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 62/193 (32%), Gaps = 31/193 (16%) Query: 125 ARLEKAGLLY-KICKNFSGIE-------------LHPDTVPDRVMSNIYEHLIRRFGSEV 170 +K LY +I K ++ E + + +I+ L + Sbjct: 98 EHRDKREALYLEIIKKYNKQEQEVFPELAAQTVLALEEDPEQDFLGSIFMSL-----NLG 152 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +E TP V L + + D+ + K ++ DP CG G L A++ Sbjct: 153 NEHNGQIFTPYHVCKLMAEVTM--DNTVQKVEQDGYISINDPCCGAGATLIAAIHAARKQ 210 Query: 231 GSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + Q+++ +C + + + + ++ G++L++ + Sbjct: 211 LEKTNLNYQNHLLVVAQDIDETVALMCYIQLSLLGV--------AGYVKVGNSLTEPMTD 262 Query: 289 GKRFHYCLSNPPF 301 P + Sbjct: 263 NDDKENYWFTPMY 275 >gi|302543769|ref|ZP_07296111.1| DNA modification methyltransferase-related protein [Streptomyces hygroscopicus ATCC 53653] gi|302461387|gb|EFL24480.1| DNA modification methyltransferase-related protein [Streptomyces himastatinicus ATCC 53653] Length = 929 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 86/275 (31%), Gaps = 62/275 (22%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPR-DVVHLATALLLDPDDALFKES----------- 202 ++E + T + D+ + ++++P ++ Sbjct: 277 FGTLFEGSME---ESERHAQGAHFTSQTDIAKIVGPVIVNPWRERISKAGAIPELEKLLL 333 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------------PILVPHG 244 T+ DP CG+G FL A + + P G Sbjct: 334 ELSSYTVLDPACGSGNFLYVAYRELRRIEHEIQNLISERRRGRHVGQQSISYVPTDHFFG 393 Query: 245 QELEPETHAVCVAGMLIR----------RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 ++ P V M++ E P +LS I L + + + Sbjct: 394 IDINPFAVEVAKVTMMLAKKLSTDELGDHQEVLPLDNLSGTIVAADALFSEW---PKANA 450 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 + NPPF + D + E+ R P + +SD F+ + K GG Sbjct: 451 IVGNPPFLGR-RGMIDDLGAEYCQLL-SREYPNISGVSD----FVTYWFPKAHAHLPPGG 504 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 RA +V + S E++ R+ L D IEA Sbjct: 505 RAGLVATKSI--------RENDSRKSSL--DYIEA 529 >gi|329919943|ref|ZP_08276845.1| hypothetical protein HMPREF9210_0652 [Lactobacillus iners SPIN 1401G] gi|328936830|gb|EGG33266.1| hypothetical protein HMPREF9210_0652 [Lactobacillus iners SPIN 1401G] Length = 333 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F+ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|300949931|ref|ZP_07163890.1| N-6 DNA Methylase [Escherichia coli MS 116-1] gi|300450699|gb|EFK14319.1| N-6 DNA Methylase [Escherichia coli MS 116-1] Length = 372 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 292 FHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + NPPF +W D + E + +P ++F+ + L+ Sbjct: 72 FDVAVCNPPFTLPEWRDDYFKIISEIGADKYISVSKYVP----AEIIFISQVIRFLKK-- 125 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG A I+L +F R G +RR+LL I ++ LP ++F RT T++ I Sbjct: 126 --GGEAGIILPDG-IFTARKFIG---LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 179 Query: 411 SNRKTEERRGKVQL 424 + + K+QL Sbjct: 180 NKKIMPHH--KIQL 191 >gi|308185103|ref|YP_003929236.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180] gi|308061023|gb|ADO02919.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180] Length = 844 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 94/320 (29%), Gaps = 39/320 (12%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + Y + + F + + N R+ Sbjct: 189 SSIFNNFKEYL---YEELSFEDFSDAFAQTLTYSLFIAKLNHPFEKIDLDNVRS------ 239 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPDRVMSNIY 159 S S N I E DF + +++ LL +I + +++ + Y Sbjct: 240 -SISKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLNDDKDPYLHFY 298 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------GMIRTLYD 211 E + + ++ E + TP VV L FK++P L D Sbjct: 299 ETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTRFKDAPLGLKSALDNENIKLLD 358 Query: 212 PTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAVCVAGM-- 259 GTG FL +A + + +G E +A+ + Sbjct: 359 FATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLSQ 418 Query: 260 -LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + + + + I +TL + + Y +P F K+ + ++ + E+ Sbjct: 419 AFKEEFKKPLKENDALQIILTNTLIQP---SEITAYRGLSPIFEKELKSAQEIKKDENIL 475 Query: 319 GELGRFGPGLPKISDGSMLF 338 G ++G + Sbjct: 476 IITGNPPYSGASSNEGLFEW 495 >gi|217034431|ref|ZP_03439844.1| hypothetical protein HP9810_11g13 [Helicobacter pylori 98-10] gi|216943101|gb|EEC22575.1| hypothetical protein HP9810_11g13 [Helicobacter pylori 98-10] Length = 839 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 106/328 (32%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S +N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ + + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRKSKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + L + + + + I +TL + + Y NP F + ++ Sbjct: 411 IAHLNLSQSLKEEFKKPLKENDALKIILTNTLIQP---SEITAYRGLNPIFETELLNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIVTGNPPYSGASSNEGLFEW 495 >gi|282878650|ref|ZP_06287419.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310] gi|281299195|gb|EFA91595.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310] Length = 1020 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 63/274 (22%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S IYE+ + E+ F TP ++V L + D L + DP C Sbjct: 319 LSEIYENFLG----ELKHERGQFYTPYNLVELILS------DKLPISKSNYNVKILDPAC 368 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHAVCVAGMLIRR 263 G+G FL ++ + + + +G E++ V + + Sbjct: 369 GSGIFLVESYKRLIKRWKNANNTNKISFEKLKNLLLDNIYGIEIDETAIKVAAFSLYLAL 428 Query: 264 LE----------------SDPRRDLSKNIQ-QGSTLSK-------DLFTGKRFHYCLSNP 299 ++ NI+ QG L + D + + NP Sbjct: 429 IDELDPKTLWIETNYQLPYLIFDSEDTNIKNQGRNLWRKDTIGEVDTHLFPKVDLIIGNP 488 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG K KE+ + LP +K + G A++ Sbjct: 489 PFGTKNLPQ---TIKEYCSKYKFSNEYVLP------------FIHK-SVEFCPTGEIALI 532 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 +S L N R+WL + +E + L Sbjct: 533 FNSKVLTN--TQKPYQNFRKWLFNANYVEKVYNL 564 >gi|282900924|ref|ZP_06308858.1| Putative Adenine specific DNA methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281194193|gb|EFA69156.1| Putative Adenine specific DNA methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 1080 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 48/342 (14%), Positives = 97/342 (28%), Gaps = 77/342 (22%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI----------ELHPDTVPDRVMSN 157 + + +F+D + +L L+ I F + + + ++ Sbjct: 282 NPFLRKLFQDVS-ERSAEKLGD-DLIGAIADIFVILRTTKMDAILSDFEMKMNREDIVIR 339 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTC 214 YE + + ++ E + TP VV + F + G T+ DP C Sbjct: 340 FYEDFLAAYKPQMRERRGVYYTPEPVVSYMVRSVDILVQEKFNKPLGLADPTVTILDPAC 399 Query: 215 GTGGFLTDAMNHV-----------------ADCGSHHKIPPILVPHGQELEPETHAVC-- 255 GTG FL + + + + G EL +A+ Sbjct: 400 GTGTFLLYIFQLIYQRFQESPATLTEGLADRSWSGYVEERLLPRIFGFELLMSPYAIAHL 459 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------------- 293 G+ ++ + +TL + Sbjct: 460 KIGLFLQETGYRFDGAKRLGVYLINTLEDITLREETQQLSLNIPQMEELIAEEAKAGARV 519 Query: 294 -------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + NPP+ ++ + KE N F G + + + +L K Sbjct: 520 KKEEPIMVVIGNPPYSG-HSENNNPWIKELVNDYY--FVDG-KPLGEKNPKWLQDDYVKF 575 Query: 347 ------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 + +G G A + + L N +R++L+ Sbjct: 576 IRFAQWRIDKSGQGVLAFISNHGFLDNPTFRG----MRQYLI 613 >gi|329667616|gb|AEB93564.1| adenine-specific DNA methylase [Lactobacillus johnsonii DPC 6026] Length = 333 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 119/354 (33%), Gaps = 49/354 (13%) Query: 98 NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152 +L+ + SFS F+ + + ++E + ++ + + ++ + +P Sbjct: 16 EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--ENLPR 71 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L + ++ + TP V + + K P +T+ DP Sbjct: 72 ALKVQIFTLLALKAITQDASDYNLMPTPSVVATIIALIW-------QKIVPTGKKTVVDP 124 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 GTG L + + + G + E + G + L+ D Sbjct: 125 AIGTGNLL---YSVIRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 L D + ++ LS+ P G + D +A E+ E F Sbjct: 178 ----YCQDAL--DPWMIEKADIVLSDLPVGY-YPLDNNAQRFENHAKEGHSFAHT----- 225 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ + N L+ A ++ LF G G +E WL + I+AIV Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 LP ++F + + N +V + +++ S+ K Sbjct: 274 LPDNMFSSQIQQKSILVFQNHGDHAVEREVLVAKLDSLKGPESLVAFNMKLNDW 327 >gi|227889675|ref|ZP_04007480.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus johnsonii ATCC 33200] gi|227849818|gb|EEJ59904.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus johnsonii ATCC 33200] Length = 333 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 61/360 (16%), Positives = 120/360 (33%), Gaps = 49/360 (13%) Query: 98 NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152 +L+ + SFS F+ + + ++E + ++ + + ++ D +P Sbjct: 16 EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L + ++ + TP V + + K P + + DP Sbjct: 72 ALKVQIFTLLALKAITQDARDYNLMPTPSVVATIIALIW-------QKIVPTGKKIVVDP 124 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 GTG L + V + G + E + G + L+ D Sbjct: 125 AIGTGNLL---YSVVRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 L D + ++ LS+ P G + D +A E+ E F Sbjct: 178 ----YCQDAL--DPWMIEKADVVLSDLPVGY-YPLDNNAQRYENHAKEGHSFAHT----- 225 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ + N L+ A ++ LF G G +E WL + I++IV Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQSIVD 273 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRIINDDQRR 450 LP ++F + + N +V + +++ S+ K D + Sbjct: 274 LPDNMFSSQIQQKSILVFQNHGDHAVEREVLVAKLDSLKGPESLVAFNMKLNDWYDKNKD 333 >gi|169347027|ref|ZP_02865969.1| putative restriction enzyme alpha subunit [Clostridium perfringens C str. JGS1495] gi|169296710|gb|EDS78839.1| putative restriction enzyme alpha subunit [Clostridium perfringens C str. JGS1495] Length = 292 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 91/281 (32%), Gaps = 60/281 (21%) Query: 209 LYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + D TCG+G FL AM+++ + G E + E A+ A MLI Sbjct: 1 MIDATCGSGAFLVKAMSNMIQEVGGLNAKEAEDIKQNKLFGIEFDREIFALACANMLIH- 59 Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 +D N++Q T + K L NPPF E K G Sbjct: 60 ------KDGKTNLEQLDTREEQACKWIKSKNISKVLMNPPF-------------ERKYGC 100 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 + + G + A +L L E + + Sbjct: 101 K-------------------KIVENVLNNVPNGIKCAFILPDKKL--------EKDKMQN 133 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 LL+ + I+ LP LF I T +++ K + + D ++N+G+ Sbjct: 134 LLKKHTLNMIIKLPEKLF-DAGITTSIFVFETGKPQGDKKIFACYMEDDGLERVKNQGRH 192 Query: 441 --RRIIND--DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 + +D + +++ V E + Y++ Sbjct: 193 DIKNKWSDIKNYWLEVVRTKVDSEFNTHQWLNPAENLSYQK 233 >gi|256960119|ref|ZP_05564290.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis Merz96] gi|293388650|ref|ZP_06633144.1| conserved hypothetical protein [Enterococcus faecalis S613] gi|312906911|ref|ZP_07765908.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512] gi|256950615|gb|EEU67247.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis Merz96] gi|291081967|gb|EFE18930.1| conserved hypothetical protein [Enterococcus faecalis S613] gi|310627165|gb|EFQ10448.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512] gi|315032550|gb|EFT44482.1| conserved hypothetical protein [Enterococcus faecalis TX0017] gi|323480178|gb|ADX79617.1| hypothetical protein EF62_1372 [Enterococcus faecalis 62] Length = 252 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157 +F+ F E+ LYK + F+ + + ++ Sbjct: 37 ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGE 89 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y L ++ A F TP +V L + + D K ++ YDP G G Sbjct: 90 LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 142 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 L N + + G + L +++ ++ + +++ R + Sbjct: 143 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 196 >gi|293383874|ref|ZP_06629780.1| conserved hypothetical protein [Enterococcus faecalis R712] gi|312978834|ref|ZP_07790560.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516] gi|291078791|gb|EFE16155.1| conserved hypothetical protein [Enterococcus faecalis R712] gi|311288271|gb|EFQ66827.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516] Length = 251 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157 +F+ F E+ LYK + F+ + + ++ Sbjct: 36 ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGE 88 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y L ++ A F TP +V L + + D K ++ YDP G G Sbjct: 89 LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 141 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 L N + + G + L +++ ++ + +++ R + Sbjct: 142 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 195 >gi|15895576|ref|NP_348925.1| DNA modification methyltransferase [Clostridium acetobutylicum ATCC 824] gi|15025315|gb|AAK80265.1|AE007731_10 DNA modification methyltransferase [Clostridium acetobutylicum ATCC 824] gi|325509725|gb|ADZ21361.1| DNA modification methyltransferase [Clostridium acetobutylicum EA 2018] Length = 581 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 98/317 (30%), Gaps = 50/317 (15%) Query: 113 AIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 F+ D + I + K F D + S Y + + Sbjct: 4 DFFKKIDDIYNEIKKSGDIETKLKYINKFRK-----DLDVNYSFSEKYYNFVSM-----K 53 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP + + + +D + DP CG G + ++ + Sbjct: 54 KERGVVYTPLKISNYIIDSTISEED----IIKNPFLKIVDPACGCGNIIIPCFIYLRNIY 109 Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST------LSK 284 + + E + + + ++ + + L+ ++ S L K Sbjct: 110 IKNLDKINNINKLELREENINYHIIKNNLFGYDVDLNAIKVLTIDLFCESKCFSSNFLCK 169 Query: 285 DLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 D + ++ LSNPP+ ++ KE+ + P +D S F Sbjct: 170 DFLLDEIGIKYDIFLSNPPY-----VGLKSINKEYSAILKTMY-PSYKDKADISYCFFEK 223 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400 L++ G+ + S L + SGE E+RR L+E + IV F+ Sbjct: 224 SILCLKID----GKLGFITSRYFL---ESQSGE-ELRRILVEKCSLYKIVD-----FYGI 270 Query: 401 -----TNIATYLWILSN 412 I T + L Sbjct: 271 RPFKKAGIDTVMIFLER 287 >gi|163868224|ref|YP_001609432.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|163868234|ref|YP_001609442.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017879|emb|CAK01437.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017889|emb|CAK01447.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1657 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 102/373 (27%), Gaps = 45/373 (12%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + S + I + D ++ ++ Y K + P + ++ +YE Sbjct: 816 NAISQAMEKILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFT 874 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223 + + ++ TP +VV + D F +S G ++ DP GTG F+T Sbjct: 875 KAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 934 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282 + + H E+ + + + K+I T Sbjct: 935 LQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTF 994 Query: 283 SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + L NPP+ K + + D + R Sbjct: 995 RMLEEKNLLQELFKENSEYLEHQKKLDIKVILGNPPYSTKQKNENDNAKNTPYPILDKRI 1054 Query: 325 GPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 S + + ++ G V ++ + G +R+ Sbjct: 1055 SETYAAHSKATNMQALYDSYIRAIRWASDRIGNAGVIGFVTNAGFI----TGHSMDSLRK 1110 Query: 380 WLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQL 424 L+E I L + +F + + IL ++ GK+ Sbjct: 1111 CLVEEFSSLYIFHLRGNARTSGEQRKKESGGIFGSGSRAPIAISILVKNPNAQQHGKIYF 1170 Query: 425 INATDLWTSIRNE 437 + D Sbjct: 1171 RDIGDYLNREEKL 1183 >gi|296100883|ref|YP_003611029.1| hypothetical protein ECL_00514 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055342|gb|ADF60080.1| hypothetical protein ECL_00514 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 228 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 35/221 (15%) Query: 101 ESYIASFSDNAK-----AIFEDF--------------------DFSSTIARLEKAGLLYK 135 +++++ FS A+ +FEDF + + R EK + + Sbjct: 9 KAFLSLFSQTARYHHRHQVFEDFVSCSVIALQNSLQFCDKREEKYMRIVGRYEKTDI-SR 67 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + + + D P + ++ L + F TP ++ + + L Sbjct: 68 MAQLLAHVTNGLDETPGDFLGRVFMQL-----ELGDKYRGQFFTPWNIGLMMARMQLGNV 122 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 + F++ P + TL +P CG G + + G + Q+++P + Sbjct: 123 EDNFRDKPFI--TLSEPACGAGCMALAFAFVLREAGYSPHRYLWVSA--QDIDPLAAGMA 178 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 + + + + S N ++ L + + L Sbjct: 179 YIQLSLSGVPGEVVIGNSLNDERRRILHTPAHYMGNWSFLL 219 >gi|227893247|ref|ZP_04011052.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus ultunensis DSM 16047] gi|227864930|gb|EEJ72351.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus ultunensis DSM 16047] Length = 338 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 54/368 (14%), Positives = 115/368 (31%), Gaps = 47/368 (12%) Query: 84 SEYSLSTLGSTNTR--NNLESYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 S + L + L++ + SF++ F++ + ++E + + Sbjct: 5 SMENFEKLFNQFLDCVQTLQTALNVSFTEALVETFDNLEQGKI--KVENGAPDHATVEKL 62 Query: 141 SGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 S L+ D + + + ++ L + ++ A TP + + L+ Sbjct: 63 SKKYQALNYDQISQKDKAQVFTFLTLKAVNDDGLNANQMPTPPAISTVIAMLMHKLLKDE 122 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 + DPT GTG L + + G + + E + Sbjct: 123 -------KMEVVDPTVGTGNLLFSIVAQLKALNHS---KDNYQLVGIDNDEEMLNLA--D 170 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + + D + L + +S+ P G + Sbjct: 171 VAAHLNDIDIE------LYCQDALMP--WMCPNADAIVSDLPIGY-------YPIDNNAK 215 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 R G S +L + + L+ G A +V+ S L +G ++ Sbjct: 216 NFENRAKKGH---SLAHLLLIEQIIKNLKP----NGYAFLVVPKSIL----SGKIGADFM 264 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRN 436 WL + ++AIV LP D+F + + N + + +V L +++ S+ Sbjct: 265 PWLTKKVYLKAIVELPDDMFRNKFNQKSILVFQNHGDQAKASEVLLSKLDSLKKEESLIR 324 Query: 437 EGKKRRII 444 K Sbjct: 325 FNVKLNEW 332 >gi|307307924|ref|ZP_07587649.1| N-6 DNA methylase [Sinorhizobium meliloti BL225C] gi|306901540|gb|EFN32143.1| N-6 DNA methylase [Sinorhizobium meliloti BL225C] Length = 534 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 89/292 (30%), Gaps = 35/292 (11%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 ++ + + P + + +Y ++ + TP + + +D Sbjct: 46 EVISFRTRLAALPTHERNYWIGTLYTLMM---SPADRRAQAAYFTPPYLADAVIDMAVDH 102 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 + + + DP G FL+ + + K +G E++ + Sbjct: 103 GFDVARHD------VLDPAAGGAAFLSLIADRMYR-AGLPKKTVTRRLNGIEIDE---RL 152 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + + + +D + ++ ++ D + ++NPP+G+ + + Sbjct: 153 ARMSEFLIAEQLEGFKDR-EIVKVRDSIHVD--VDGSYDLVIANPPYGRMRPDEVSHEKW 209 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + F + GG A+V+ SS F G Sbjct: 210 SKVAYGNHINKYAI---------FTELCIRVAKP----GGLVALVIPSS--FRGGPLY-- 252 Query: 375 SEIRRWLLENDLIEAI--VALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 +R ++ I A+ V D+F + ++ + +V+ Sbjct: 253 DRMRSYIASQGQILALGAVTNRDDVFADVAQDVSVLLMRKGIPHRTKQRVKF 304 >gi|256419629|ref|YP_003120282.1| hypothetical protein Cpin_0583 [Chitinophaga pinensis DSM 2588] gi|256034537|gb|ACU58081.1| hypothetical protein Cpin_0583 [Chitinophaga pinensis DSM 2588] Length = 882 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 71/401 (17%), Positives = 128/401 (31%), Gaps = 72/401 (17%) Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYS-FYNT--SEYSLSTLGSTNTRNNLESYIASFS 108 + +R F G+ E + V S F++ + +SL + SY ++F+ Sbjct: 11 KQKIRSLINQFIGNLNIEEKKISVKDLSIFFSVLLATFSLRKNSGLKIDSEYASYRSAFA 70 Query: 109 DNAKAIFEDF----DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + I + F D S I + LL I + I D D ++S Y++L R Sbjct: 71 SEFELIQQRFPELMDIFSLIESQIRTELLINIFEKLDAIYQEEDGDLDDIISWSYQYLKR 130 Query: 165 RFGSEVSEGAEDFMTPRDVVHL-----------ATALLLDPDDALFKESPGMIRTLYDPT 213 + L ++ + FK + L D Sbjct: 131 DLEKAAFKKVGQDNVKIKNSDLLFTTQFFTDKYMVKYIVTQALSGFKGARIRDVVLIDCA 190 Query: 214 CGTGGFLTDAMNHVADCGSH----------HKIPPILVPHGQELEPETHAVCVAGMLIR- 262 G G FLT N + + G +L+ + + ++ Sbjct: 191 SGGGNFLTYGFNILFRLYQQTFPSWSNQAIVDVLLQEAITGYDLDNNLSKIAALSLFVKA 250 Query: 263 RLESDPRRDLSKNIQQGST------LSKDLFTGK-----------------RFHYCLSNP 299 + + P + NI G L+ D+ + + L+NP Sbjct: 251 SIYAIPSPATTINIYGGQADDNLGFLNPDIISDTIGALTFRTRLDKIDKAGKIKVFLTNP 310 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAA 357 PF K + D KN S G + F+ + ++ NG R Sbjct: 311 PFMGKRDMDTSLKNYLQKNI----------PESKGDLCVSFIQRIIQEM----NGHDRLG 356 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 +V ++ L+ S S+ R+ LE + + V L ++ F Sbjct: 357 VVSQNNWLY----LSSFSDFRKMFLEKETLIECVDLGSNAF 393 >gi|208434589|ref|YP_002266255.1| hypothetical protein HPG27_630 [Helicobacter pylori G27] gi|208432518|gb|ACI27389.1| hypothetical protein HPG27_630 [Helicobacter pylori G27] Length = 887 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 48/371 (12%), Positives = 94/371 (25%), Gaps = 52/371 (14%) Query: 36 LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 L + L R + + ++ + L Sbjct: 33 LKMIFDKNPEFFHDFLNSLRDNIHQNIREDEALDMITSHIITKP----------IFDALF 82 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N +N + + L+ LY+ K + P + + Sbjct: 83 GDNIKNPIAKALDKMVLK----LSTLGLEGETKDLKN---LYESVKTEATHAKSPKSQQE 135 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211 + N+Y + + SE TP +VV + T++D Sbjct: 136 L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 194 Query: 212 PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P GTG F+ + + K ++ ++ + + + D Sbjct: 195 PFTGTGSFIARLLSKENKLISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 254 Query: 270 RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPF--GKK 304 KNI +L KD + + NPP+ G K Sbjct: 255 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKEIKDTLADQNIRVIIGNPPYSSGAK 314 Query: 305 WEKDKDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + D + K +L G K+ + L+ G V++ Sbjct: 315 SQNDNNQNLSHPKLKKLVYEKYGKNSTAKVGKATRDALIQSIRMASDVVKDKGVIGFVVN 374 Query: 362 SSPLFNGRAGS 372 S + + Sbjct: 375 GSFIDSKSTDG 385 >gi|226946192|ref|YP_002801265.1| DNA methylase [Azotobacter vinelandii DJ] gi|226721119|gb|ACO80290.1| DNA methylase [Azotobacter vinelandii DJ] Length = 212 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LF+ + + L GRAA+VL LF + ++R LLE + IV LP Sbjct: 22 LFMALIMHLLRHDT---GRAAVVLPDGFLFGEGVK---TTLKRELLEEFNLHTIVRLPKG 75 Query: 397 LFFR-TNIATYLWILSNRKTEERRG 420 +F T+IAT + + Sbjct: 76 VFAPYTSIATNILFFEKGGPTQDLW 100 >gi|304390893|ref|ZP_07372845.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325776|gb|EFL93022.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 179 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 23/163 (14%) Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILS 411 RA IV + LF + + E ++RR L+EN +EAI+ +P+ +F + ++T + + + Sbjct: 2 SRACIVPNG-VLFRSNSKAYE-QLRRELVENQKLEAIIYMPSGVFKPYS-GVSTAILVFT 58 Query: 412 NRKTEERRGKVQLINAT-DLWTSIRNEGKKRRIINDDQRRQILDIY------VSRENGKF 464 V L N D +T + D IL + R + Sbjct: 59 KT-DAGGTDDVWLYNMEGDGYTLDDKRDPDEKH---DDIPDILSRWRNLGAERDRARTEK 114 Query: 465 SRMLDY-------RTFGYRRIKVLRPLRMSFILDKTGLARLEA 500 S ++ F + + R+ + + L L Sbjct: 115 SFLVSKSEIVENGYDFSFNKYTETVYERVEYPPTEEILDDLAD 157 >gi|170717953|ref|YP_001785001.1| type I restriction enzyme M subunit [Haemophilus somnus 2336] gi|168826082|gb|ACA31453.1| putative type I restriction enzyme M subunit [Haemophilus somnus 2336] Length = 265 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 30/233 (12%) Query: 79 SFYNTSE--YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136 Y SE Y TL + L +Y N + F AR + ++ Sbjct: 17 PHYRRSEVFYDFITL--SALDMYLVTYRDQAEPNLRERFAHAK-----ARYSDSE-FTQL 68 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + + +++ +L + + TP + L + L D Sbjct: 69 AELLAVTVNALTQKRYDFLGSVFMNL-----NLGDGYRGQYFTPSHIADLMAKVTLQDCD 123 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 + + TL +PTCG+G + +N + + + L H Q+++ +C Sbjct: 124 RIISQQ--GFVTLSEPTCGSGVMVIGCVNAM--FDAKYNPQQQLWVHCQDVDFTAAMMCY 179 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + + + I G TL K Y L++ + ++ Sbjct: 180 IQLSLLHI--------PACIVVGDTLLN---ETKIQMYTLAHLMGNWSHKLEQ 221 >gi|229048167|ref|ZP_04193736.1| N-6 DNA methylase [Bacillus cereus AH676] gi|228723154|gb|EEL74530.1| N-6 DNA methylase [Bacillus cereus AH676] Length = 1037 Score = 58.8 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 61/488 (12%), Positives = 136/488 (27%), Gaps = 116/488 (23%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 + + NT+N++ Y F + + + +++ + F Sbjct: 293 FNYIDKGNTKNDINRYNGGL----------FKEDTVLNNIVIPDKDFEVIEKFFDYNFK- 341 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVS---------EGAEDFMTPRDVVHLATALLLDPDDAL 198 D + ++ +I+E I + + F TP + +D Sbjct: 342 DELTIDILGHIFEQSISDIEALKGIKKEEIGSRKANGVFYTPEYITSYIVKDAIDDWIEN 401 Query: 199 FKESPGMI----------------------------------RTLYDPTCGTGGFLTDAM 224 K + D CG+G FL Sbjct: 402 EKVRLDFNSLTDWKNAKSKSAESRSINRHIEKLKELKDALNNIKILDAACGSGAFLIKVF 461 Query: 225 NHVADCGSHHKIP--------------------------PILVPHGQELEPETHAVCVAG 258 ++ + +G +L E+ + Sbjct: 462 EYLVQKHKEIQKEIADLNALRTGGIENNLALDLDMDREILKNNIYGIDLNKESVEITKLS 521 Query: 259 MLIRRLESD-PRRDLSKNIQQGSTLSKDL-----------------FTGKRFHYCLSNPP 300 + ++ + P L NI G+++ D F + NPP Sbjct: 522 LWLQTANNKKPLTTLDDNIIVGNSIVNDEEIAPARVINWEKEFTSVQEKGGFDIIVGNPP 581 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + D ++ + + L D S++F+ + L G ++++ Sbjct: 582 Y-----VPIDFLDSDTSEYFQEEYQDILKNKWDISVIFMHKCVSFLNSS----GVLSMIV 632 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + L G+ ++ R + I++LP D+F N+ T ++I + + Sbjct: 633 PRTWL----TGANYTKFREVFSSELNLNKIISLPKDVFPDANVDTCIFIGTKDNPGNKIE 688 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 K L D+ I ++ I ++++ Y +I+V Sbjct: 689 KNYLAYKYDIKAKISVLNVIDDDMDSIPIDFIKQHHMNKIFTDI-----NSYKLYNKIQV 743 Query: 481 LRPLRMSF 488 L ++ Sbjct: 744 LLKDESNY 751 >gi|317179844|dbj|BAJ57630.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32] Length = 1112 Score = 58.4 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + L+ AL + + + + + E F + T L+ L Sbjct: 173 KYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y NP F + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELLNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIVTGNPPYSGASSNEGLFEW 495 >gi|313158825|gb|EFR58208.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 258 Score = 58.4 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 26/176 (14%) Query: 107 FSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPDTVPDRV------MSN 157 F D I + F F + R + + + + F I L + N Sbjct: 30 FDDMLAYIVDLFSFDNPWEPHGRYKDPEIRKRFFELFQEIVLLMNKKICDDREWYDPFGN 89 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y+ I + A F TP +V L ++ + +E G DP CG+G Sbjct: 90 LYQTQIASHARRAN--AGQFFTPEHIVDLMVSI-----NGEGRELTGKGLNFGDPACGSG 142 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 FL A H P G++++ + V ++ + + S Sbjct: 143 RFLIAA----------HAKFPGNYCCGEDIDRTCALMTVCNFILHGVNGEVIWHDS 188 >gi|315171663|gb|EFU15680.1| conserved hypothetical protein [Enterococcus faecalis TX1342] Length = 251 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157 +F+ F E+ LYK + F+ + + ++ Sbjct: 36 ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGE 88 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y L ++ A F TP +V L + + D K ++ YDP G G Sbjct: 89 LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 141 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 L N + + G + L +++ ++ + +++ R + Sbjct: 142 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 195 >gi|307299102|ref|ZP_07578904.1| adenine specific DNA methyltransferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915527|gb|EFN45912.1| adenine specific DNA methyltransferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 1028 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 84/300 (28%), Gaps = 57/300 (19%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 L A + I F + + + + YE + + E + TP VV Sbjct: 279 LATADV-RGILDRF-----YHEGKGSDPIIHFYETFLAEYDPSTREKRGVYYTPEPVVSY 332 Query: 187 AT---ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---------- 233 ++L T+ DP GT FL A + S Sbjct: 333 IVRSLNIILKEKFGKADGFASEGVTVLDPAAGTMTFLAQAAKLAVEEYSQKYGEGMVPGL 392 Query: 234 HKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + EL +A+ M + L D + + L + + Sbjct: 393 IRDHILKDFYAFELMMAPYAIGHMKMSFFLEELGYRMEDDERFKLYLTNALDMEEHGQAK 452 Query: 292 FH----------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 + L NPP+ + + +E K F G Sbjct: 453 YVGTTSLAQESELAGQVKKEEDILVILGNPPYSGHSSNKGNWISEEIKRYF---FSDG-K 508 Query: 330 KISDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + + + +L K ++ G IV + S L N +R+ L++ Sbjct: 509 PLGERNPKWLQDDYVKFIRFAQWKIESAKKGIVGIVTNHSYLENATFRG----MRKSLMK 564 >gi|330814761|ref|YP_004362936.1| type I restriction-modification system, M subunit, putative [Burkholderia gladioli BSR3] gi|327374753|gb|AEA66104.1| type I restriction-modification system, M subunit, putative [Burkholderia gladioli BSR3] Length = 1050 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 90/299 (30%), Gaps = 61/299 (20%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S+IYE + ++ F TP +V +L + + DP C Sbjct: 339 ISSIYETFVSDRAAD-----GVFYTPPYLVDFVLDRVLPWSGHEWDLK------ILDPAC 387 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRR 263 G+G FL A + + G + +P V + + Sbjct: 388 GSGIFLVKAFQRLVHRWKQANPGQSIRAETLRNLLERNIFGVDKDPHAVRVACFSLYLAM 447 Query: 264 LESDPRRDLSKNI-----QQGSTLSKDLFTGKR-----------FHYCLSNPPFGKKWEK 307 + R I ++ + D F + + + N P+G Sbjct: 448 CDEVEPRHYWTQIVFPTMREQRLVCSDFFAEDKGGFHTISDAGSYDLVVGNAPWGDSLVT 507 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPLF 366 + R + G + FL + L GR A++ S +S LF Sbjct: 508 NAAIGWAS-----DDRHKWTVANKDIGGL-FLAKAMHLLARH----GRIAMIQSANSLLF 557 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPT---DLF----FRTNI---ATYLWILSNRKT 415 NG A + R+ L +E I L +F T + + I+S K Sbjct: 558 NGSAKA--LAFRQELFTTHRVEEIYNLSALRFKVFKRKSHTTKMSISPACVVIMSGEKP 614 >gi|218132263|ref|ZP_03461067.1| hypothetical protein BACPEC_00120 [Bacteroides pectinophilus ATCC 43243] gi|217992778|gb|EEC58779.1| hypothetical protein BACPEC_00120 [Bacteroides pectinophilus ATCC 43243] Length = 418 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 37/210 (17%) Query: 86 YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI-CKNFSGIE 144 + L N +N +E+ + + I + L++ I +F I Sbjct: 227 LTSYKLVMQNIQNAIENVLKESDIKSSRI---NYIKQVFSTLQENTKFADIPLGHFKSIT 283 Query: 145 LHPDTVPD-------------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 + + + + Y I ++ G +TP+ + L Sbjct: 284 WYIEQLELKIKPMMDYADSTVDALGVFYHEFI-KYSGGDGSGLGIVLTPQHLTEFMCEL- 341 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEP 249 + + D CG+G FL AM+H+ + +G E + Sbjct: 342 ---------ANVNKNSRVVDICCGSGSFLVTAMSHMFKDANPDEVENIRKNGLYGVEFDD 392 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + +A M+IR +D NI +G Sbjct: 393 GLYTLAIANMIIR-------KDGKSNIYKG 415 >gi|332885017|gb|EGK05270.1| hypothetical protein HMPREF9456_02940 [Dysgonomonas mossii DSM 22836] Length = 1797 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 84/273 (30%), Gaps = 65/273 (23%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + + Y+ I S + F TP VV F ++ I TL Sbjct: 83 RDNTDSAIEYKQYI---NSIKNSVLTAFYTPPLVVQALA--------DTFSDNDVQINTL 131 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 DP+ G GGF + + A +I + Sbjct: 132 LDPSAGMGGFSSAF---------------------------SFRYLKAD-IINFEKDLLT 163 Query: 270 RDLSKNIQQGSTLSKDLFT------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + +I + D F F SN PFG+ D + ++ + + + R Sbjct: 164 GKILSHINPDDKVIVDGFETIESRYNNHFDVVTSNIPFGEMSVFDAEFMKTDKLHRDSTR 223 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + FL K GG A + S L + +R+WL+ Sbjct: 224 AIH--------NYFFL-----KGVETLREGGLMAFITSQGVLNSPNNQ----AVRQWLMN 266 Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 N + + + LP +LF T + + L +L Sbjct: 267 NTNLVSAIRLPNNLFVENAGTEVGSDLIVLQKN 299 >gi|293363456|ref|ZP_06610213.1| conserved domain protein [Mycoplasma alligatoris A21JP2] gi|292552976|gb|EFF41729.1| conserved domain protein [Mycoplasma alligatoris A21JP2] Length = 102 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%) Query: 1 MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58 M + IW AE+L G DF + +L R + + + + K Sbjct: 1 MNNKKELEQAEIHKTIWAIAEELRGTVDGWDFKQYVLGLLFYRFISENISSYINKIENKN 60 Query: 59 ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 + + + ++ FY + Sbjct: 61 GNTTFDFATTKDKDFESAKETLISEKGFYIKPSHLFKN 98 >gi|309803934|ref|ZP_07698018.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] gi|309809543|ref|ZP_07703401.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|308164029|gb|EFO66292.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] gi|308170215|gb|EFO72250.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] Length = 333 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F++ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|312875124|ref|ZP_07735139.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b] gi|325911894|ref|ZP_08174298.1| N-6 DNA Methylase [Lactobacillus iners UPII 143-D] gi|311089330|gb|EFQ47759.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b] gi|325476400|gb|EGC79562.1| N-6 DNA Methylase [Lactobacillus iners UPII 143-D] Length = 333 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F++ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLSVDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + KV Sbjct: 289 KSILVLQNHGQNMQLRKVL 307 >gi|256962633|ref|ZP_05566804.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis HIP11704] gi|256953129|gb|EEU69761.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis HIP11704] Length = 252 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157 +F+ F E+ LYK + F+ + + ++ Sbjct: 37 ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETTTDILGE 89 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y L ++ A F TP +V L + + D K +I YDP G G Sbjct: 90 LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVI--FYDPCIGGG 142 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 L N + + G + L +++ ++ + +++ R + Sbjct: 143 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 196 >gi|219856139|ref|YP_002473261.1| hypothetical protein CKR_2796 [Clostridium kluyveri NBRC 12016] gi|219569863|dbj|BAH07847.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 599 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 128/402 (31%), Gaps = 72/402 (17%) Query: 95 NTRNNLESYIASFSDNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 N N + + F ++ K I ++F + I + EK ++ + F+ E Sbjct: 4 NLHKNGDKSVNDFIESIKKI---YNFMETPIPKEEKLEIIKNFKQQFNISEK-------- 52 Query: 154 VMSNIYEHLIRRFGS--EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 E+ +++ +++ A T R++ + L++ D + D Sbjct: 53 ------EYFSQKYYELVSINKRAGIVYTQRELSYFMIKNLIEEKD----VIYNPFVKIVD 102 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPR 269 P CG G L+ ++ + V + + +H VC + + D Sbjct: 103 PACGCGNILSVCFFYLRHIFIKNIEVINNVNNINLKLENINSHIVCN---NLFGFDIDEI 159 Query: 270 RDLSKNI---------QQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 NI Q+ + + KD K+F + NPP+ + + + K Sbjct: 160 ALKILNIDLFSISGEFQKENFVLKDFLIDAIEKKFDIFIGNPPY-IGHKSIEKKYSETLK 218 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + SD F LE G+AA + A SG ++ Sbjct: 219 RVYKNIYKD----KSDVYYCFFEKSLKSLEKA----GKAAFITPRYFC---EACSG-KQL 266 Query: 378 RRWLLENDLIEAIVALPTDLFF------RTNIATYLWILSNRKTEERRGKVQLINATDLW 431 R +L N I IV F+ + + N+K + ++ + ++ Sbjct: 267 REFLSTNTTIYKIVD-----FYGIRPFKGVGVDPIIIFFRNKKGLNNKIEIIKPDKSE-- 319 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + K + +I Y + S + F Sbjct: 320 ---KKGRNKFYDSLFLNKDKI--RYKKFFIPQSSIDDNGWVF 356 >gi|193216909|ref|YP_002000151.1| methyltransferase, HsdM related [Mycoplasma arthritidis 158L3-1] gi|193002232|gb|ACF07447.1| methyltransferase, HsdM related [Mycoplasma arthritidis 158L3-1] Length = 517 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 20/178 (11%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 +L I + + +YE + + + TP+DV + Sbjct: 33 NKILEFITDKTIEELSFNKLLSFHNLGELYEIGLAHSNKIAKKDMGKYYTPQDVSRVMAE 92 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQ 245 LLL+ + I ++ D CGTG + + ++ + + L + + Sbjct: 93 LLLENE----------ITSIADVGCGTGNLIIEVLDMMKAIKGVDPIDFILKGKLYLYDE 142 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 + + +L+R S N+ G + ++NPP+ Sbjct: 143 DKLALKICLKKIDVLLR-----ANVSSSINVILGD-FLNKKISLPAGVSVITNPPYSV 194 >gi|108563078|ref|YP_627394.1| hypothetical protein HPAG1_0653 [Helicobacter pylori HPAG1] gi|107836851|gb|ABF84720.1| hypothetical protein HPAG1_0653 [Helicobacter pylori HPAG1] Length = 1389 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 66/486 (13%), Positives = 140/486 (28%), Gaps = 91/486 (18%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ IA D L+ LY+ K + + + + Sbjct: 581 GDNIKNPIAKALDKMVEKLSTLGLEGETKDLKN---LYESVKTEAAHAKSQKSQQEL-IK 636 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 637 NLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTG 696 Query: 216 TGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ + + K ++ ++ + + + D Sbjct: 697 TGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 756 Query: 274 KNIQQGSTLS-----------------------KDLFTGKRFHYCLSNPPFGKKWEKD-- 308 KNI +L KD + + NPP+ + + Sbjct: 757 KNIALTDSLDYLEEKTNKGVLPLYEDLKENKDIKDTLADQNIRVIIGNPPYSAGAKSEND 816 Query: 309 ----------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 + V + + R + + L+ G Sbjct: 817 NNQNLTHPKLQKWVYETYGKNSTSRNVGQTTRDT------LIQSIRMASDVVKDKGVIGF 870 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 V++ S + + A R+ + ++ ++L++L+ R + Sbjct: 871 VVNGSFIDSKSADG----FRKCVAKD-------------------FSHLYVLNLRGNQRT 907 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 G+V + EG K I + R I ++ K S + + F Y Sbjct: 908 SGEV-----------SKKEGGK--IFDSGSRATIAIVF----FVKDSSVPNNTIFYYE-- 948 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 V L+ L+ + + K++P + W++ + ++ P + + Sbjct: 949 -VEDYLKREAKLNLLAGFENLDLVPFEKITPNDKGDWINQREDAFDKLIPLKRDKKLQND 1007 Query: 539 SIKSNE 544 SI Sbjct: 1008 SIFDLN 1013 >gi|29347736|ref|NP_811239.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482] gi|29339637|gb|AAO77433.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482] Length = 1908 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 81/246 (32%), Gaps = 46/246 (18%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP +V+ + L + SPG DP+ GTG F++ + Sbjct: 99 ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRSQCHSA 150 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + PE A +L R+ + + NI+ L Sbjct: 151 SGN--------------TPEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F SN PFG D + NG RF S + F K Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S + + A +R++L+ + + V LP +LF T + + L Sbjct: 240 REGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEVGSDL 295 Query: 408 WILSNR 413 IL Sbjct: 296 IILQKD 301 >gi|189468324|ref|ZP_03017109.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM 17393] gi|189436588|gb|EDV05573.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM 17393] Length = 1908 Score = 58.4 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 81/246 (32%), Gaps = 46/246 (18%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP +V+ + L + SPG DP+ GTG F++ + Sbjct: 99 ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRSQCHSA 150 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + PE A +L R+ + + NI+ L Sbjct: 151 SGN--------------TPEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F SN PFG D + NG RF S + F K Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S + + A +R++L+ + + V LP +LF T + + L Sbjct: 240 REGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEVGSDL 295 Query: 408 WILSNR 413 IL Sbjct: 296 IILQKD 301 >gi|260576736|ref|ZP_05844722.1| N-6 DNA methylase [Rhodobacter sp. SW2] gi|259021103|gb|EEW24413.1| N-6 DNA methylase [Rhodobacter sp. SW2] Length = 1032 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 49/281 (17%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y+ + + + TP ++ + ++ DP CG+G Sbjct: 307 VYDRFLGE-REAERRASGAYYTP----MFLADTVVSQAWEMLPDATRTTGNFLDPACGSG 361 Query: 218 GFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETHAVCVAGMLIRRLESD 267 FL + + + HG +L V V + + LE Sbjct: 362 VFLVRSFQRLCEHWRAKHNTQTLSWKTLLSLLSQIHGWDLNGGAVRVAVFSLYVALLEEV 421 Query: 268 PRRDLSKNIQ--------QGSTL-SKDLFT----GKRFHYCLSNPPFGKKWEKDKDAVEK 314 RD+ K I G TL +D F G R+ + NPP+ + + +V Sbjct: 422 SPRDIRKLITRGKLLPELWGKTLVCRDFFEVPPDGARYEVIIGNPPWTSRRGPARSSV-- 479 Query: 315 EHKNGELGRFG--PGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 R+ G P + + F + L GG A +L + F Sbjct: 480 --------RWSKNAGHPMPGGEDAWAFSWKALSHLAD----GGLIAFLLP-AMGFLHNHA 526 Query: 372 SGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWI 409 E R + ++ L LF + + L I Sbjct: 527 QKTVEARDAFFRKSRVRRVINFADLRFQLFEKAHRPAALII 567 >gi|188528143|ref|YP_001910830.1| hypothetical protein HPSH_07010 [Helicobacter pylori Shi470] gi|188144383|gb|ACD48800.1| hypothetical protein HPSH_07010 [Helicobacter pylori Shi470] Length = 1078 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRENKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y NP F + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELLNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495 >gi|223938587|ref|ZP_03630478.1| N-6 DNA methylase [bacterium Ellin514] gi|223892706|gb|EEF59176.1| N-6 DNA methylase [bacterium Ellin514] Length = 540 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 59/256 (23%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP+ + L ++ + DP G GG L + Sbjct: 40 KSFGQVATPQAIAELMARWVMS----------KKPEAVLDPAAGLGGLLHECRRF----- 84 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G E + +T + +K I ++K + Sbjct: 85 -----DQQVSLIGVERDQQTLNQAK----------NSAPSGTKLIFADYLMTKTG----Q 125 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F ++NPP+ + + ++ FG L ++++ LFL+ + L Sbjct: 126 FPGIIANPPY---VKAHRLDYSEDVWRSFEQCFGTRLDRLTNLYALFLLKIWEDLAPQ-- 180 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--------DLFFRTNI 403 GRAA++L + L A GE EI++ L+E ++ P +LF Sbjct: 181 --GRAAVLLPAEFL---NANFGE-EIKQHLIE------VIRPPGIIVFEPGLNLFPDALT 228 Query: 404 ATYLWILSNRKTEERR 419 + + L + ++ R Sbjct: 229 TSAIVFLEKKHSKTSR 244 >gi|302670608|ref|YP_003830568.1| adenine-specific DNA methylase [Butyrivibrio proteoclasticus B316] gi|302395081|gb|ADL33986.1| adenine-specific DNA methylase [Butyrivibrio proteoclasticus B316] Length = 663 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 88/264 (33%), Gaps = 39/264 (14%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + +Y L + + + TP VV + ++ Sbjct: 176 SEDTLGMLYLSLRG---LQAKKSTGAYYTPFFVVDELINEAFSSKA----TTDYASKSYI 228 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDP 268 DP CGTG FL +++ P+ HG +++ +C + I Sbjct: 229 DPACGTGNFLLRLPDNI----------PLANIHGADIDKTAVILCRINIAIKYHITSWSE 278 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 L+ NI L ++ L NPP+G + KD A+ + + G G Sbjct: 279 LEVLTNNIVCRDFLFSP--ANGYYNVTLGNPPWGYAFSKDSTALIRHTFSSFSG---TGK 333 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 P+ F + + L+ L + G IR+++ +N + Sbjct: 334 PES------FSLFIEKSLKESDE-----VTFLLPETILGSDYHLG---IRKFITDNANVV 379 Query: 389 AIVALPTDLFFRTNIATYLWILSN 412 +I L ++F + + + +S Sbjct: 380 SISYL-GEVFDKVQCPSVIMRISR 402 >gi|290956126|ref|YP_003487308.1| hypothetical protein SCAB_16041 [Streptomyces scabiei 87.22] gi|260645652|emb|CBG68743.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 1067 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 92/339 (27%), Gaps = 64/339 (18%) Query: 133 LYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 L + + + ++ + ++YEH + + + + + + TP ++V L Sbjct: 257 LDLLTRTIARVDWPTIRSGNRDAYLHLYEHFLTVYDPALRQQSGSYYTPHEIVEEMVRLT 316 Query: 192 LDPDDALFKESPGMI---RTLYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPI 239 D + G + DP GTG FL + VA+ Sbjct: 317 EDVLRVRLDQEAGFGSEEVKIIDPAMGTGTFLHTIIERVAEQAVADHGPAMARDAISRLA 376 Query: 240 LVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------ 291 G EL+ AV A L++R + D N TL + Sbjct: 377 TRLFGFELQMGPFAVAELRASDLLKRYHAALPGDGL-NFFVTDTLDNPFVEDEYLASTYG 435 Query: 292 -----------------FHYCLSNPPFG-----------KKWEKDKDAVEKEHKNGELGR 323 + NPP+ K+ + + + ++ GR Sbjct: 436 ALSAFRRRANRVKRNIPVTAVVMNPPYDDKAEGRGGWVEKRAQGQEPPLLDAFRHQGNGR 495 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + L + + G I S G G G + R + Sbjct: 496 YEHVLKNMHVYFWRWATWKVFDAHPDDRHGVVCLITPSGWA--TGPGGRGMRDYLRRTCD 553 Query: 384 NDLIEAIVAL---------PTDLFFRTNIATYLWILSNR 413 I+ L P +F + I R Sbjct: 554 EGW---IIDLTPEGQRSPVPNRVFPGVAQPLAIHIFVRR 589 >gi|221369899|ref|YP_002520995.1| hypothetical protein RSKD131_4062 [Rhodobacter sphaeroides KD131] gi|221162951|gb|ACM03922.1| Hypothetical Protein RSKD131_4062 [Rhodobacter sphaeroides KD131] Length = 1620 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 51/438 (11%), Positives = 114/438 (26%), Gaps = 63/438 (14%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNL 100 R + L R + + + + + + + + +++ S + L Sbjct: 761 RAFDDFLAELRDDLNDTITEGDAIEMLAQHIITRPVFETLFEGHKFTAENPVSRAMQRVL 820 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + + LEK Y + + P ++ +Y+ Sbjct: 821 ------------DVLNEANLDKESKDLEK---FYASVRMRAHGITDPHAKQKLIV-ELYD 864 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219 RR +E TP ++V + + F ++ G + DP GTG F Sbjct: 865 KFFRRAFPRTTEKLGIVYTPVEIVDFIIHSVNEMLQEHFGQTLGSEGVHILDPFTGTGTF 924 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQ 277 +T + + H E+ + + + + + + I Sbjct: 925 ITRLLQSGLIAPEEMERKFRHEIHANEIVLLAYYIAAINVEAVYHGI-MGGDYVPFEGIC 983 Query: 278 QGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 T S D + NPP+ D G Sbjct: 984 LTDTFQMYESDDLISHYMPDNSERRKRQKASDIRVIVGNPPYSVGQATANDDNANVIYPG 1043 Query: 320 ELGR-FGPGLPKISDGSM--LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 R + ++ +M L+ ++ G A V ++ + A Sbjct: 1044 LDARIRSTYAARSANTNMRSLYDSYIRAIRWASDRIGDAGIVAFVTNAGWVDGNAADG-- 1101 Query: 375 SEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERR 419 +R L E + L + +F + + + Sbjct: 1102 --MRACLAEEFTDLYVFHLRGNQRTSGEKSRKEGGKIFGSGSRAPISISVFVKNPKATEI 1159 Query: 420 GKVQLINATDLWTSIRNE 437 G++ + D + Sbjct: 1160 GRIFFHDIGDYLDQKQKL 1177 >gi|256964526|ref|ZP_05568697.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis HIP11704] gi|256955022|gb|EEU71654.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis HIP11704] Length = 252 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157 +F+ F E+ LYK + F+ + + ++ Sbjct: 37 ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEENSTDILGE 89 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y L ++ A F TP +V L + + D K ++ YDP G G Sbjct: 90 LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 142 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 L N + + G + L +++ ++ + +++ R + Sbjct: 143 VTLIALANIMREKGYN--YQRSLKALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 196 >gi|312871486|ref|ZP_07731580.1| N-6 DNA Methylase [Lactobacillus iners LEAF 3008A-a] gi|311093006|gb|EFQ51356.1| N-6 DNA Methylase [Lactobacillus iners LEAF 3008A-a] Length = 333 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F+ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|315586042|gb|ADU40423.1| probable adenine specific DNA methyltransferase [Helicobacter pylori 35A] Length = 842 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 172 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 229 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 230 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSIIKDLNDD 289 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 290 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 349 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 350 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 409 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y P F K+ ++ Sbjct: 410 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SETIAYRGLQPIFEKELLNAQE 466 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 467 IKKDENILIITGNPPYSGASSNEGFFEW 494 >gi|148550647|ref|YP_001260086.1| hypothetical protein Swit_5209 [Sphingomonas wittichii RW1] gi|148503066|gb|ABQ71319.1| conserved hypothetical protein [Sphingomonas wittichii RW1] Length = 267 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 16/146 (10%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 F I + + P V+ +I+ L ++ F TP V + + L Sbjct: 74 FGEITMALEEAPGDVLGSIFTAL-----EIHNKNRGQFFTPYPVCQMMAQVTLGDAKDAL 128 Query: 200 KESPGMIR-TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 + +P CG G + + I H ++ + AV + Sbjct: 129 ALIDDKGFVSAMEPACGAGAMVIALAEAMRA----AGINYQRHLHVTAIDIDQRAVHM-- 182 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK 284 + ++ G++LS Sbjct: 183 ----GYIQFSLLHIPAHVIVGNSLSN 204 >gi|325913066|ref|ZP_08175437.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B] gi|325477622|gb|EGC80763.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B] Length = 333 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F++ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N R KV Sbjct: 289 KSILVLQNHGQNMRLRKVL 307 >gi|167768842|ref|ZP_02440895.1| hypothetical protein ANACOL_00159 [Anaerotruncus colihominis DSM 17241] gi|167669014|gb|EDS13144.1| hypothetical protein ANACOL_00159 [Anaerotruncus colihominis DSM 17241] Length = 287 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 17/150 (11%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + + + +E +PD + ++ L +E A F TP V A + + Sbjct: 79 LAEVVADLEHNPDQ---DFLGELFMAL-----DLGNEWAGQFFTPYSVCRAMAA-VSYGE 129 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 D K ++ DP CG G L N G+ ++ Q+++ +C Sbjct: 130 DLKAKIETHGWASVNDPACGAGALLVAFANECRRPGNDVNYQTSVLFVAQDIDFLAGCMC 189 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + I G T++ Sbjct: 190 YIQLSLMGCPGY--------IVIGDTIAHP 211 >gi|332884167|gb|EGK04435.1| hypothetical protein HMPREF9456_00762 [Dysgonomonas mossii DSM 22836] Length = 1864 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 89/273 (32%), Gaps = 56/273 (20%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F S + F TP +VV K++ + DP+ G G F Sbjct: 92 QYFNSIKNSVLTAFYTPPEVVQTIA--------GTLKDAGIEVNRFLDPSAGMGEFPKAF 143 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVC-VAGMLIRRLESDPRRDLSKNIQQGSTL 282 +T C +L +L S + + I+ T+ Sbjct: 144 S-----------------------NDDTEKFCFEKDLLTGKLLSHLQPEDKVKIEGFETI 180 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F SN PFG D ++++ + + R + F+ Sbjct: 181 ESRY--NNYFDVVSSNIPFGDMSVFDASFMKQDALHRDSTRAIH--------NYFFV--- 227 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--- 399 K GG A + S + + +R+WL+EN + + + LP +LF Sbjct: 228 --KGVESLREGGIMAFITSQGVMNSPNNEP----VRKWLMENTNLVSAIRLPNNLFTDYA 281 Query: 400 RTNIATYLWILSNR--KTEERRGKVQLINATDL 430 T + + L +L K E G+ + +T L Sbjct: 282 GTEVGSDLILLQKNTAKEELNFGEKLFVRSTPL 314 >gi|52550522|gb|AAU84371.1| BpmI endonuclease-methyltransferase fusion protein type IIG [uncultured archaeon GZfos9D8] Length = 957 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 61/399 (15%), Positives = 118/399 (29%), Gaps = 112/399 (28%) Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR---- 165 IF+ F + L +L I + + + ++ N+YE + + Sbjct: 280 GIFD-FGADKITSTLIIDDRVLKTIIQSLYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 338 Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG--MIRTLYDPTC 214 EV + + TP+ +V + +++P + DP C Sbjct: 339 TAGHQAKVETKPEVKKAGGVYYTPQYIVDYIVKNTVGKLVEGKEKTPEEIAGIKILDPAC 398 Query: 215 GTGGFLTDAMNHVADCG----------------------------SHHKIPPILVPHGQE 246 G+G FL A ++ + K + G + Sbjct: 399 GSGSFLIGAYTYLLRYHLDWYTSNEPKKHKEAVFQVRENEWYLTTAEKKRILLNNIFGVD 458 Query: 247 LEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLSKDLFTGK- 290 ++P+ V +L++ LE++ +L NI+ G++L F G Sbjct: 459 IDPQAVEVTKLSLLLKVLENESRESIDQQVKLGLEGVLPNLEGNIRCGNSLIGPDFYGAG 518 Query: 291 ---------------------------------RFHYCLSNPPFGKKWEKDKDAVEKEHK 317 F + NPP+G + ++ Sbjct: 519 QQETLFDEVEMRRVNVFDWDDDVKGFGKIMKHGGFDCVIGNPPYGALITSAE----IKYL 574 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 NG+ L D +LF+ LE G I ++ L +I Sbjct: 575 NGKFNLQQYSL----DTYLLFVEKALTLLEDYTLLGM---IFPNTWLL-----NLTMDKI 622 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416 R ++ +E IV +F + + T + I + Sbjct: 623 RNYIFHETQVEEIVHYRHPVFPKATVDTEIVIFRKGSPK 661 >gi|261838916|gb|ACX98681.1| hypothetical protein HPKB_0048 [Helicobacter pylori 52] Length = 1168 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + L+ L Sbjct: 173 RYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--IYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKRLDGIKEIQWLLNEILSSINHVDMDSILKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y P F + + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SETIAYRGLQPIFETELKSAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 E+ G ++G + Sbjct: 468 IKRDENILIITGNPPYSGASSNEGLFEW 495 >gi|257054590|ref|YP_003132422.1| hypothetical protein Svir_05210 [Saccharomonospora viridis DSM 43017] gi|256584462|gb|ACU95595.1| hypothetical protein Svir_05210 [Saccharomonospora viridis DSM 43017] Length = 1209 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 81/289 (28%), Gaps = 67/289 (23%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + R + ++Y+ L + TP V L L+P F Sbjct: 174 YDFTDPEWDTRFLGDLYQDL----SEHARKTYALLQTPEFVEEFILDLTLEPAVEEFGL- 228 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHA 253 DP CG+G FL + + HG + P + Sbjct: 229 --ADLRTIDPACGSGHFLLGLFRRILTKWREVEPGTDQWELIQRTLASVHGCDKNPFAVS 286 Query: 254 VCVAGMLI------RRLESDPRRDLSKNIQQGSTL------------------------- 282 + ML+ + D NI G +L Sbjct: 287 IARFRMLVAVLREANAMRLDQAPQFPINIAVGDSLMHGRGAPGIQGELFALDEPHTYTTE 346 Query: 283 -------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 S DL +H + NPP+ +K ++ ++ + G + +P Sbjct: 347 DVNEYVRSCDLLGKGSYHVVVGNPPYITVKDKQENKNYRDRYDACSGTYALSVP---FAQ 403 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 LF + + + + G + ++S + E + L+E Sbjct: 404 RLFQLAI--RRDGSERDAGYVGQITANSFMKR--------EFGKKLIEQ 442 >gi|308274109|emb|CBX30708.1| Type IIS restriction enzyme Eco57I [uncultured Desulfobacterium sp.] Length = 995 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 60/437 (13%), Positives = 116/437 (26%), Gaps = 95/437 (21%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------ 140 TL N+ ++ I F + S +L K ++ I F Sbjct: 246 DYQTLLKFANSNDFKALIKKFEQA-----DKRYNSGLFNQLLKDKIVENISSVFWTIIKQ 300 Query: 141 ---SGIELHPDTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHL 186 V+ +IYE + + + TP ++ Sbjct: 301 LYYPESPYSFSVFSSDVLGSIYEIFLSEKLTVQSVSVILVKKPENVDRDIITTPTFIISD 360 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 + + + D +CG+G FL + + D H + Q Sbjct: 361 ILRNTVLKKCEGKSDKEILKLKFADISCGSGAFLLELFQLLNDILIDHYLKNDKTKLIQT 420 Query: 247 LEPET---HAVCVAGML--IRRLESDPRRDLSK--------------------------- 274 + +L I ++ D + Sbjct: 421 NINTFKLPFEIKRQLLLNCIYGVDKDYNAVEAAKFGLLLKLLEGEDVNSTNKTKPVLPDL 480 Query: 275 --NIQQGSTLSKDL---------------FTGKRFHYCLSNPPF--GKKWEKDKDAVEKE 315 NI G++L F+ RF + NPP+ + + Sbjct: 481 SQNIFFGNSLLNPKQVTNKKDQVIINPFDFSKLRFDVIVGNPPYMKSEDMKNITPLELPL 540 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 +K + D LFL N L+ G ++ S G Sbjct: 541 YKTNFDSAYKQF-----DKYFLFLEQGINLLDDD----GILGYIVPSKFTKVGAG----K 587 Query: 376 EIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKV----QLINATDL 430 ++R L + + + +IV+ + +F T L IL+ K ++ Sbjct: 588 KLRELLADKEYLHSIVSFGANQVFTDKTTYTCLLILNK-KPQKTFQYAEVRSLKSWKVRE 646 Query: 431 WTSIRNEGKKRRIINDD 447 + + KK ++ + Sbjct: 647 PEAAKYGSKKTNELDSE 663 >gi|296161826|ref|ZP_06844628.1| N-6 DNA methylase [Burkholderia sp. Ch1-1] gi|295887990|gb|EFG67806.1| N-6 DNA methylase [Burkholderia sp. Ch1-1] Length = 72 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 5/30 (16%), Positives = 15/30 (50%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRL 44 +W A+ L + ++ +++L L+ + Sbjct: 10 LWATADKLRANMGAAEYKRIVLGLIFLKYI 39 >gi|157829188|ref|YP_001495430.1| hypothetical protein A1G_07415 [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801669|gb|ABV76922.1| hypothetical protein A1G_07415 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 152 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 11/154 (7%) Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PF + +K + +N F G+ ++G ++H L+ GGR A Sbjct: 1 MPFSQAITKKTSKNGKIITENHITSLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 +V+ LF + ++LL ++ +++LP F T + T + + Sbjct: 56 LVVPEGFLFRKDTSAVH----QFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFTMHINR 111 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + + + + N+ +K IND RR Sbjct: 112 IIKKNIGFMRLRISALRLDNKKRKIVGINDLNRR 145 >gi|290580595|ref|YP_003484987.1| restriction-modification system LlaBIII [Streptococcus mutans NN2025] gi|254997494|dbj|BAH88095.1| restriction-modification system LlaBIII [Streptococcus mutans NN2025] Length = 1564 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 63/469 (13%), Positives = 133/469 (28%), Gaps = 80/469 (17%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101 + + L + + E + + + ++ S + +E Sbjct: 732 KAFDKFLSSLQHNINESIDEKQAIEMLSQHLIT---LPIFDALFEDYSFIKHNPVSQAME 788 Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 I FS + F L+ ++ L SGI+ ++ + Sbjct: 789 KIIEEFSQ--------YGFEKEQRELQPFYESVRLRA-----SGIDNAQAKQK--IIVTL 833 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTG 217 Y+ + +E TP +VV + + K + DP GTG Sbjct: 834 YDKFFQTGFKSTTERLGIVFTPVEVVDFIVRSVDVVLRKHFGKTLASENVHILDPFTGTG 893 Query: 218 GFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGM--LIRRLESDP 268 F+T ++++ + + H E+ ++ + + + + D Sbjct: 894 TFITRTLHYLKELMDKGEITYADILRNYTQELHANEIVLLSYYIAAINIEAVFDEINGDE 953 Query: 269 RRDLSKNIQQGSTL----SKDLFTG---------------KRFHYCLSNPPFGKKWEKDK 309 K I T S+D K + NPP+ K + Sbjct: 954 GYQPFKGIVLTDTFESTESEDTLDDSFFETNDKRLKRQQEKTITVIMGNPPYSAKQNNED 1013 Query: 310 DAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSP 364 D + R ++ + L ++ G A + +SS Sbjct: 1014 DNTNRNEYLKLDSNIRRKWIETSSATNKNGLLDSYIRALRWSIDRLEKDGVVAFITNSSF 1073 Query: 365 LFNGRAGSG-----------------ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY 406 + +G A G + +IRR +E ++F T +A Sbjct: 1074 I-DGVAMDGLRASLEEEIDYIYLVDLKGQIRRRSKAQAKVEG-----GNIFDIMTGVAIT 1127 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 + + + +GK++ N D T + + + +I Sbjct: 1128 ILV-KKGDSNLTKGKIKYFNIGDFLTKKEKLTRLSNLTSIQSIHNFTEI 1175 >gi|331269201|ref|YP_004395693.1| type IIS restriction enzyme R and M protein [Clostridium botulinum BKT015925] gi|329125751|gb|AEB75696.1| type IIS restriction enzyme R and M protein, putative [Clostridium botulinum BKT015925] Length = 589 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 53/379 (13%), Positives = 114/379 (30%), Gaps = 67/379 (17%) Query: 127 LEKAGLLYKIC----KNFSGIELHPDTVPDRVMS-----NIYEHLIRRFGSEVSEGAEDF 177 L+K LY I + + Y L + + + Sbjct: 5 LDKLNELYNIINTPIDRIFKTMAIDKYKKVLNIGKEKFSDTYMDLKEK---QKIKENGVV 61 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234 TP+++ + ++ +D + DP+CG G + + + + Sbjct: 62 YTPKEIANYIVDNVIFKED----IINNPYIKILDPSCGCGDIIIVCYEKLKNIYEENLEF 117 Query: 235 ---------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 K +G +++ + + N ++ Sbjct: 118 INEVNRINLRKEDISKHIVKNNLYGFDIDEIALKILAIDLF-----EVSGCFYENNFKKQ 172 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L + ++F+ + NPP+ +++KE+ F D S F Sbjct: 173 DFLLE--KFSEKFNIIVGNPPY-----VGHKSIDKEYAKKLKVNFKEIYKDKGDISYCFF 225 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 N L GR + + S + + SGE E+R+ L E + IV F+ Sbjct: 226 QQAINNLSKK----GRLSFITSRYFI---ESPSGE-ELRKILKEVCSLYKIVD-----FY 272 Query: 400 R------TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 + + L+N + + ++Q+I + + K + + + Sbjct: 273 GIRPFKRIGVDPVIIFLTN--EQNIQEEIQVIKPQKVSKKEESNFYKSLFLKQGECYKSF 330 Query: 454 DIYVSRENGKFSRMLDYRT 472 I + N K + D + Sbjct: 331 YINKNYLNNKGWILRDKKE 349 >gi|153938955|ref|YP_001392368.1| modification methylase family protein [Clostridium botulinum F str. Langeland] gi|152934851|gb|ABS40349.1| modification methylase family protein [Clostridium botulinum F str. Langeland] gi|295320359|gb|ADG00737.1| modification methylase family protein [Clostridium botulinum F str. 230613] Length = 577 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 48/333 (14%), Positives = 103/333 (30%), Gaps = 67/333 (20%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y LI+ Sbjct: 2 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYELIK 52 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + TP+++ + ++ +D + DP+CG G L Sbjct: 53 -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103 Query: 225 NHVADCGSHH------------------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 ++ + + K +G +++ + + + Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILMMDLF-----Y 158 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 N ++ L +D+ F + NPP+ +V+KE+ G++G Sbjct: 159 LTGYYNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKGKYGY 211 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 D S F ++ N N + + S + + +R++L EN Sbjct: 212 VYKDKGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCN 263 Query: 387 IEAIVALPTDLFFR------TNIATYLWILSNR 413 I I+ F+ I + + Sbjct: 264 IYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291 >gi|328952619|ref|YP_004369953.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] gi|328452943|gb|AEB08772.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] Length = 1174 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 82/288 (28%), Gaps = 72/288 (25%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L K+ +F+ + +P V+ N++E LI E G + T ++ A + Sbjct: 305 LAKLIGDFNTRDF--AHLPQDVVGNVFERLI---PPEERHGLGQYFTSENLCDFIAAFCI 359 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 T+ DP+CGTG FL A + + G H + G ++ P Sbjct: 360 R----------SPHDTVLDPSCGTGTFLIRAYDRLRWLGRHDHTKLLSQIWGVDIGPFPA 409 Query: 253 AVCVAGMLI-----RRLESDPRRDLSKNIQQGSTLSKDLFTGK------------RFHYC 295 + + I G +F Sbjct: 410 ELATINLFRQRISEHGNFPRIICQDFFRITPGECFPFPPPKMDLDNPQTIEEPFPQFEAI 469 Query: 296 LSNPPF--------------------------------------GKKWEKDKDAVEKEHK 317 + N P+ + + ++D E HK Sbjct: 470 IGNFPYVSADRIEKYEAGYLDFIRRRLLNGWFEDYPQLFCHKNQNAQIKFERDIAENRHK 529 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + + G + + + ++L GGR IV S++ L Sbjct: 530 RNDYQKNGLQIHISTYADL--YVYLFFHAARFLKPGGRMGIVTSNAWL 575 >gi|255692111|ref|ZP_05415786.1| putative DNA methylase [Bacteroides finegoldii DSM 17565] gi|260622210|gb|EEX45081.1| putative DNA methylase [Bacteroides finegoldii DSM 17565] Length = 1908 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 80/246 (32%), Gaps = 46/246 (18%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP +V+ + L + SPG DP+ GTG F++ Sbjct: 99 ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRPQCHSA 150 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + PE A +L R+ + + NI+ L Sbjct: 151 SGN--------------TPEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F SN PFG D + NG RF S + F K Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S + + A +R++L+ + + V LP +LF T + + L Sbjct: 240 REGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEVGSDL 295 Query: 408 WILSNR 413 IL Sbjct: 296 IILQKD 301 >gi|170022327|ref|YP_001718832.1| N4/N6-methyltransferase family protein [Yersinia pseudotuberculosis YPIII] gi|169748861|gb|ACA66379.1| N4/N6-methyltransferase family protein [Yersinia pseudotuberculosis YPIII] Length = 255 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 59/216 (27%), Gaps = 48/216 (22%) Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------------- 58 N WK + L D ++ +I L + + A E ++ + Sbjct: 14 NKFWKTTDKLRADIDIANYNNLIFGLILPKNISNAFEISQKELTTLFCEIKNPDEICAIS 73 Query: 59 YLAFGGSNIDLESFVK--------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 + + + D ++ + + F+ + + + + + Sbjct: 74 HEDYEPNEDDTQAIQEELIVEDHYIEKNIFWMPKAARWDIRKNKAI-PQIGTALWVNTAT 132 Query: 111 AKAI---------------FEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + + E + F+ +L + S I + Sbjct: 133 EQGVKLRSASWLGNSPLDEIEKTNTKLKSSFNHISQYRVGNKVLTTLINAVSDINFNNPE 192 Query: 150 VPDR----VMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + + +YE+ + +F + + TP+ Sbjct: 193 YNNLKSKGIYGYVYEYFLNQFAFDEEKQGGQCYTPK 228 >gi|260575999|ref|ZP_05843993.1| type III restriction protein res subunit [Rhodobacter sp. SW2] gi|259021698|gb|EEW25000.1| type III restriction protein res subunit [Rhodobacter sp. SW2] Length = 1629 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 59/437 (13%), Positives = 116/437 (26%), Gaps = 62/437 (14%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNL 100 R + L R + + + + + + + + +++ S + L Sbjct: 763 RAFDAFLGELRDDLNDTISEGDAIEMLAQHIITRPVFETLFEGHKFTAENPVSRAMQRVL 822 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 + + + LEK Y K S P ++ +Y+ Sbjct: 823 ------------DVLNEANLDKESRDLEK---FYASVKLRSQGITDPQAKQKLIV-ELYD 866 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219 RR +E TP ++V + + + F ++ G + DP GTG F Sbjct: 867 KFFRRAFPRTTEKLGIVYTPVEIVDFIIHSVNEVLQSEFGQTLGSPGVHIIDPFTGTGTF 926 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQ 277 +T + + H E+ + + + + L+ + I Sbjct: 927 ITRLLQSGLIAPEEMEHKFRHEIHANEIVLLAYYIAAINIEAVYHGLQG-GEYVPFEGIC 985 Query: 278 QGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 T S D + NPP+ D D G Sbjct: 986 LTDTFQMYESDDLISHYMPDNSERRKRQKATDIRVIIGNPPYSAGQGSDNDEAANVRYTG 1045 Query: 320 ELGRFGPGLPKISDGS----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 R S G+ + G A V ++ + G+A G Sbjct: 1046 LDNRIQQTYAARSTGNPRSLYDSYIRAIRWASDRIGSEGVLAYVTNAGWV-EGKAADG-- 1102 Query: 376 EIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRG 420 +R L E I L + +F + + + + RG Sbjct: 1103 -LRACLAEEFTDLYIFHLRGNQRTSGEQSRREGGKIFGSGSRAPIAISVFVKSEKRAERG 1161 Query: 421 KVQLINATDLWTSIRNE 437 + + D + Sbjct: 1162 NIYFHDIGDYLDQKQKL 1178 >gi|282895624|ref|ZP_06303749.1| Putative Adenine specific DNA methyltransferase [Raphidiopsis brookii D9] gi|281199318|gb|EFA74183.1| Putative Adenine specific DNA methyltransferase [Raphidiopsis brookii D9] Length = 1010 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 62/211 (29%), Gaps = 23/211 (10%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + + ++ YE + + ++ E + TP VV + F + Sbjct: 263 DFDMKMNREDIVIRFYEDFLATYKPQMRERRGVYYTPEPVVSYMVRSVDILVKEKFNKPL 322 Query: 204 G---MIRTLYDPTCGTGGFLTDAMNHV-----------------ADCGSHHKIPPILVPH 243 G T+ DP CGTG FL + + K + Sbjct: 323 GLADPTVTILDPACGTGTFLLYIFQLIYQRFQESPAALTEGLVDKSWSGYVKERLLPRIF 382 Query: 244 GQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 G EL +A+C G+ + + I +TL + L N P Sbjct: 383 GFELLMSPYAICHLKLGLFLEETGYQFDNNQRLGIYLINTLEDIKLREETQQLSL-NIPQ 441 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 ++ ++ K E G P S Sbjct: 442 MEQLIAEEAKAGARIKKQEPIMVVIGNPPYS 472 >gi|94992648|ref|YP_600747.1| superfamily II DNA/RNA helicase [Streptococcus pyogenes MGAS2096] gi|94546156|gb|ABF36203.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes MGAS2096] Length = 2416 Score = 57.3 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 103/359 (28%), Gaps = 70/359 (19%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYE 160 F +N AI + + + +A E+ +L K S + +YE Sbjct: 1131 EKFRNNIAAIQTLHELEIENRLATPEEQEILSKYVGWGGLSQAFDENNAAWADEFIELYE 1190 Query: 161 HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 +L + + + F TP V+ +L G + +P+CGTG F Sbjct: 1191 NLSPEEYRAAMESTLTAFYTPPVVIKAMYEVL-----DRLGYEKG---NMLEPSCGTGNF 1242 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 G + +G EL+ T + + I Sbjct: 1243 F----------GLIPEKMAGSKLYGVELDDLTGRIAK------------QLYQKATIAVQ 1280 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 F L N PFG D +++ + F Sbjct: 1281 -GFEDTKLPDDHFDVVLGNVPFGDFRVNDSRYEQQKFLIHDY----------------FF 1323 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 +K++ GG ++ S + E+R+++ + + + LP + F Sbjct: 1324 AKALDKVK----AGGVVMLLTSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFK 1374 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 T + + + IL R +V I + G + +L Sbjct: 1375 ANAGTEVTSDILILKK------RDRVMEIEPEWVHLDTDENGITMNRYFVEHPEMVLGT 1427 >gi|300361343|ref|ZP_07057520.1| DNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353962|gb|EFJ69833.1| DNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 333 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 120/354 (33%), Gaps = 49/354 (13%) Query: 98 NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152 +L+ + SFS F+ + + ++E + ++ + + ++ D +P Sbjct: 16 EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRKLDY--DNLPR 71 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L + ++ + TP + + + + P +T+ DP Sbjct: 72 TLKVQIFTLLTLKAITQDASDYNLMPTPSVIATVIALIW-------QRIVPTGKKTVVDP 124 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 GTG L + + ++ +E + + + + Sbjct: 125 AIGTGNLLYSVIRQLIQENHSQNNYKLIGIDNEE--------ALLDLADIGAHLEDLKI- 175 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 ++ L D + ++ +S+ P G + D +A E+ E F Sbjct: 176 --DLYCQDAL--DPWMIEKADIVVSDVPVGY-YPLDNNAERFENHAKEGHSFAHT----- 225 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ + N L+ A ++ LF G G +E WL + I+AIV Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 LP D+F + + N + +V + +++ S+ K Sbjct: 274 LPDDMFSSQIQQKSILVFQNHGEHALKREVLVAKLDSLKKPESLVAFNMKLNDW 327 >gi|300813099|ref|ZP_07093477.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495940|gb|EFK31084.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 332 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 95/318 (29%), Gaps = 43/318 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + ++ + ++ ++ +Y L+ + ++ A TP L Sbjct: 50 DQKTVAELKERYAALDY--KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLA 103 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L D L P + L DP G+G L +A G + + Sbjct: 104 TVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDND 157 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 E + + L++D L+ + +S+ P G Sbjct: 158 EEMLNLADVAAHLAGLKADF--------YCQDALTG---WPVKPDVVVSDLPIGF----- 201 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 ++ R G + +LF+ + L A +L + G Sbjct: 202 --YANDDNAKNFDLRTKEGH---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTG 251 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 G ++ WL ++AIV LP+ LF + I N + +V L Sbjct: 252 TVG---ADFMPWLASKVYLQAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLE 308 Query: 429 DLW--TSIRNEGKKRRII 444 +L S+ K Sbjct: 309 NLKKEESLVALNIKLNEW 326 >gi|291558112|emb|CBL35229.1| Type I restriction-modification system methyltransferase subunit [Eubacterium siraeum V10Sc8a] Length = 667 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 107/315 (33%), Gaps = 74/315 (23%) Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ + G + + +TP V L D+ ++D G Sbjct: 327 GKLFNEMYSWLGFTQDQLNDVVLTPSYVATFLCRLARVNKDS----------YVWDFATG 376 Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + G L AMN + G E+ + + V M++ Sbjct: 377 SAGLLVAAMNEMLIDAKNTIKSPEQLAIKSANIKANQLLGLEILSNVYMLAVLNMIMMG- 435 Query: 265 ESDPRRDLSKNIQQGSTLSKDL-----FTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHK 317 D S NI +L+ D T ++F + NPP+ + Sbjct: 436 ------DGSSNILNKDSLNFDGNYGFEKTDEKFPADAFILNPPYSAEGNG---------- 479 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 M+F+ + + G AAI++ +S +G+A S Sbjct: 480 ------------------MIFVEKALSMMSK-----GYAAIIIQNSAG-SGKASSYN--- 512 Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 + +L++ + A + +P DLF +++ T +++ + ++ V+ I+ ++ + + Sbjct: 513 -KNILKHSTLLASIKMPIDLFIGKSSVQTNVYVFRVGEAHQKDDVVKFIDFSNDGYTRSD 571 Query: 437 EGKKRRIINDDQRRQ 451 K + + D R + Sbjct: 572 RKKASKNLFDTDRAK 586 >gi|253990773|ref|YP_003042129.1| hypothetical protein PAU_03299 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639104|emb|CAR67716.1| Hypothetical protein PA-RVA20-21-0105 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782223|emb|CAQ85387.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 616 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 18/157 (11%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E A L ++ S + + + + I+ L ++ + TP V H+ Sbjct: 443 EDAFRLSRLL---SEVIMGLEYEVGDFLGAIFMAL-----ELGNDQTGQYFTPFPVNHMM 494 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + L A T+ DP CG GG + + + G + ++ ++ Sbjct: 495 ARMKLAEGLARLGSGEHEYITVSDPDCGAGGMIIAMYQTMLEAGFN--PQQQMLAFCVDI 552 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +P + + + + + + G++L+ Sbjct: 553 DPVAAMMTYIQLSLLGVPAV--------VTVGNSLTN 581 >gi|220908573|ref|YP_002483884.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 7425] gi|219865184|gb|ACL45523.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 7425] Length = 1125 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 6/133 (4%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 KA+FE + + RL+ +L + + + YE + Sbjct: 281 PMIKALFEKVATPTHVRRLDLEEVLNWTGEALNRVDRESFFSKFDEGQAVQYFYEPFLEA 340 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTD 222 F + + + TP +VV A + + G + DP CGTG FL + Sbjct: 341 FDPALRKEFGVWYTPPEVVQYMVARVDKVLREELQIEDGLADPNVYILDPCCGTGAFLVE 400 Query: 223 AMNHVADCGSHHK 235 + + Sbjct: 401 VLKRIETNLQDKG 413 >gi|56550614|ref|YP_161680.1| hypothetical protein RMe0058 [Cupriavidus metallidurans CH34] gi|94152650|ref|YP_582052.1| hypothetical protein Rmet_6243 [Cupriavidus metallidurans CH34] gi|56410320|emb|CAI30202.1| hypothetical protein RMe0058 [Cupriavidus metallidurans CH34] gi|93359016|gb|ABF13102.1| putative Type I restriction-modification system methyltransferase subunit [Cupriavidus metallidurans CH34] Length = 297 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 12/159 (7%) Query: 132 LLYKICKNFSGIE--LHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + + + F + P+ V+ Y L ++ A F TP V L Sbjct: 82 MFGALVQTFEDLVQGWVPNGDGLADVLGQTYMML-----ELGNDKAGQFFTPYPVSRLMA 136 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 + D A F + G + TL +P CG GG + + + D G H + +++ Sbjct: 137 RM-NIGDGAPFVQRDGFV-TLSEPACGAGGMVIACADALHDAG--HNYQQTMHATCIDID 192 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 P + + + + + + +++ ST Sbjct: 193 PRCVHMTYVQLALLHIPAIVIHGNALSVEAWSTWFTPAH 231 >gi|283781193|ref|YP_003371948.1| type II DNA modification enzyme [Pirellula staleyi DSM 6068] gi|283439646|gb|ADB18088.1| putative type II DNA modification enzyme [Pirellula staleyi DSM 6068] Length = 1629 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 51/233 (21%) Query: 91 LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150 L S ++ +L+ +F N + + + F + + +G I + ++ Sbjct: 429 LFSDDSTPDLDD---AFLAN-QDLLDA--FRNLCYTEDTSGRGGSI-----RRPVDFGSL 477 Query: 151 PDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + ++YE L+ + + TP +++ LDP Sbjct: 478 GSDELGSVYESLLELHPKIDTDEGPFTLGTASGNERKTTGSYYTPTSLINCLLDSALDPV 537 Query: 196 DALFKESPGMIR--------TLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPIL 240 + P + DP CG+G FL A +A + Sbjct: 538 VHAAIDVPDRAEAERKLLNLKVCDPACGSGHFLIAAAERMAMHLARLRTGDDEPNTLDVQ 597 Query: 241 V---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLS 283 +G ++ P +C + + +E P L +IQ G++L Sbjct: 598 HAKRDIIGRCIYGVDINPMAVELCKVALWMEAMEPGKPFSYLEHHIQCGNSLL 650 >gi|317181337|dbj|BAJ59121.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57] Length = 832 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y NP F + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELLNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495 >gi|309808666|ref|ZP_07702558.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a] gi|308168140|gb|EFO70266.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a] Length = 333 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F++ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L+ G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N R KV Sbjct: 289 KSILVLQNHGQNMRLRKVL 307 >gi|15645966|ref|NP_208146.1| putative adenine specific DNA methyltransferase [Helicobacter pylori 26695] gi|2314522|gb|AAD08396.1| putative adenine specific DNA methyltransferase [Helicobacter pylori 26695] Length = 835 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + L+ AL + + + + + E F + T L+ L + Sbjct: 176 KYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPSE 233 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ + N I E DF + +++ LL +I + + +++ Sbjct: 234 KINLDNVRSLIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 293 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 294 KDPYLHFYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 353 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 354 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 413 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y +P F K+ ++ Sbjct: 414 IAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP---SEIIAYRGLSPIFEKELSNAQE 470 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G + G + Sbjct: 471 IKKNENILIITGNPPYSGASENKGLFEW 498 >gi|18450304|ref|NP_569175.1| hypothetical protein pli0021 [Listeria innocua Clip11262] gi|16415805|emb|CAC42019.1| pli0021 [Listeria innocua Clip11262] Length = 1569 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 93/305 (30%), Gaps = 43/305 (14%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 E F+ LE LY+ + +++ +Y+ + +E Sbjct: 800 LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 855 Query: 175 EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232 TP +VV + D F K + DP GTG F+ + ++ + Sbjct: 856 GIVFTPIEVVDFIVHSVDDVLKQHFGKSLASEGVHVLDPFTGTGTFIVRTLTYLKEQMDA 915 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282 H E+ ++ + + E + + + I T Sbjct: 916 GEISLADITRKFTQELHANEIVLLSYYIAAINIEATFDEINGDEEGYVPFEGIVLTDTFE 975 Query: 283 ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDK-DAVEKEHKNGELG- 322 ++D F + NPP+ K + + + + ++ + Sbjct: 976 STETEDTLDDDYFGTNDERLKRQQSIPITVIMGNPPYSAKQKNEDGNQIRTTYEKLDASL 1035 Query: 323 -RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 ++ + LF ++ + G + ++S + +G A G +R+ Sbjct: 1036 QNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITNNSFI-DGNAMDG---MRQ 1091 Query: 380 WLLEN 384 LLE Sbjct: 1092 SLLEE 1096 >gi|157826362|ref|YP_001494082.1| Type I restriction-modification system methyltransferase subunit [Rickettsia akari str. Hartford] gi|157800320|gb|ABV75574.1| Type I restriction-modification system methyltransferase subunit [Rickettsia akari str. Hartford] Length = 130 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 22/120 (18%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG- 231 + TPR+++ L+ P T+YD CG GG LT+ +N++ + Sbjct: 12 NFGGYSTPRNIIKTIITLI----------DPKFGETVYDHFCGAGGVLTEVVNYIKENNI 61 Query: 232 ----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + +G+EL T + +++ + IQQ TL D Sbjct: 62 INTEEDLEKLMFNTLYGRELTKTT-RIAKMNTVLQCYD------GHSEIQQIDTLRVDEL 114 >gi|268589806|ref|ZP_06124027.1| type I site-specific deoxyribonuclease, HsdR family [Providencia rettgeri DSM 1131] gi|291314794|gb|EFE55247.1| type I site-specific deoxyribonuclease, HsdR family [Providencia rettgeri DSM 1131] Length = 272 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 6/83 (7%) Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKYLAFG 63 L IW A D+ G DF + +L R + Sbjct: 9 ELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGDESVNYAAMSDDDE 68 Query: 64 GSNIDLESFVKVAGYSFYNTSEY 86 E +K GY Y T ++ Sbjct: 69 NIKFAKEDAIKTKGYFLYPTRDW 91 >gi|307822216|ref|ZP_07652448.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum SV96] gi|307736782|gb|EFO07627.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum SV96] Length = 101 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 18/94 (19%) Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 T L+ P T+YDP C + G LTD+ + K + +G+E Sbjct: 1 MTLLVFIPIKDPLHN----PLTIYDPACSSSGMLTDSKD-------EIKAKAGVYLYGKE 49 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + PET+ +C + M I+ + +NI GS Sbjct: 50 INPETYGICKSDMRIKGNDP-------ENILFGS 76 >gi|301163032|emb|CBW22580.1| putative DNA methylase [Bacteroides fragilis 638R] Length = 1911 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 82/246 (33%), Gaps = 46/246 (18%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP +V+ + L + SPG DP+ GTG F++ Sbjct: 99 ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSA---FQPQF 147 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 S P +V + + +L R+ + + NI+ L Sbjct: 148 HSAAGNGPEIVAYEK------------DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F SN PFG D + NG RF S + F K Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S + + A +R++L+ + + V LP +LF T + + L Sbjct: 240 REGGILAFITSQGVMNSAMA----YPVRQYLMNQSRLLSAVRLPNNLFTDYAGTEVGSDL 295 Query: 408 WILSNR 413 IL Sbjct: 296 VILQKD 301 >gi|309750544|gb|ADO80528.1| conserved hypothetical protein p59_4 [Haemophilus influenzae R2866] Length = 253 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 70/190 (36%), Gaps = 20/190 (10%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + + + F+ I + + +++ L E + TP + HL Sbjct: 60 NEDEIQALSRLFNIIVEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLMA 114 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 A+ L +L K TL +PTCG+G + +A N++ + + ++L+ Sbjct: 115 AVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLD 170 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEK 307 +C M + + + + G+TL + + + + N + KK E Sbjct: 171 FTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLES 220 Query: 308 DKDAVEKEHK 317 E E++ Sbjct: 221 ADSYTEAEYQ 230 >gi|326777770|ref|ZP_08237035.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] gi|326658103|gb|EGE42949.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1] Length = 1392 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 62/243 (25%) Query: 154 VMSNIYEHLIR---------RFGSEVS------EGAEDFMTPRDVVHLATALLLDP-DDA 197 + +IYE L+ R V+ + + TP ++ LDP D Sbjct: 429 ELGSIYESLLELVPKHSATDRSFELVNRLGNDRKKTGSYYTPASLIETLLDSTLDPVIDD 488 Query: 198 LFKESPGMIR------------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-- 237 K T+ DP CG+G FL A +A + Sbjct: 489 AQKRGERAAAEAGEPDPRKAVIRELLSLTVCDPACGSGHFLVAAARRIAKRVAAVDENNP 548 Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGS-- 280 +G +L P + + + LE L +I+ G+ Sbjct: 549 EPPPVAVRSALHKVVARCLYGVDLNPMAVELAKVSLWLEALEPGKALGFLDAHIKHGNGL 608 Query: 281 -----TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDG 334 +L D K F + K+ + + + G+ G F L PK+S+ Sbjct: 609 VGTTPSLMLDGIPNKAFKAVEGD---DDKFARFLEKRNDHERKGQRGLFDVELDPKVSNT 665 Query: 335 SML 337 Sbjct: 666 MFA 668 >gi|240850369|ref|YP_002971763.1| helicase/methyltransferase [Bartonella grahamii as4aup] gi|240267492|gb|ACS51080.1| helicase/methyltransferase [Bartonella grahamii as4aup] Length = 1636 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 93/319 (29%), Gaps = 37/319 (11%) Query: 43 RLECALEPTRSAV--------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 RL+ L +S +E S + ++ +A + + +L Sbjct: 751 RLKSILADKKSEAYRAFHAFHKELKNGLNDSIEEEDALEMLAQHL---VTRPIFESLFDG 807 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 N + + + + + + + LEK Y+ K + + + + Sbjct: 808 NEFVSKNAISQAMEKILRE-LDKMNIKEEVKDLEK---FYQSVKEDTEGIIETRAKQNLI 863 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213 + +YE + + ++ TP ++V + D + F +S ++ DP Sbjct: 864 I-RLYEDFFTKAFKKTTDKLGIVYTPIEIVDFILHSVNDVLEQEFGQSLSSRGVSILDPF 922 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-L 272 GTG F+T + + E+ + + + Sbjct: 923 TGTGTFITRLLQSGLIKPEDMEYKFRNEIKANEIVLLAYYIAAINIESTYHSLMEGDYIP 982 Query: 273 SKNIQQGSTLS----KDLFTGKRF--------------HYCLSNPPFGKKWEKDKDAVEK 314 + I T KD FT F + NPP+ + D Sbjct: 983 FEGICLTDTFLMLEEKDFFTRYMFENSERCKKQQEADIQVIVGNPPYSVGQKNANDNNPN 1042 Query: 315 -EHKNGELGRFGPGLPKIS 332 + + + + + S Sbjct: 1043 VRYDTLDDSIYKQYITRSS 1061 >gi|255656742|ref|ZP_05402151.1| putative DNA modification methylase [Clostridium difficile QCD-23m63] Length = 577 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 99/283 (34%), Gaps = 43/283 (15%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + ++S YE+ + + + + + TP+ +V L D + P + Sbjct: 6 QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250 D +CG G FL + + + D H +G +++ + Sbjct: 59 LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHSHILNYCIYGADIDEK 118 Query: 251 THAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 ++ ++ +++ +D K N+ +L +F Y + NPP+ + +K Sbjct: 119 AISILKDSLINKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + + + +D F + + L+ GG +++ L Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223 Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILS 411 ++R ++ N ++ IV L ++F +++ + Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFD 266 >gi|309389439|gb|ADO77319.1| hypothetical protein Hprae_1180 [Halanaerobium praevalens DSM 2228] Length = 51 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 6/30 (20%), Positives = 16/30 (53%) Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRL 44 +WK+++ L + ++ V+L L+ + Sbjct: 12 LWKSSDKLRNNMDPAEYKHVVLGLIFLKYI 41 >gi|296452429|ref|ZP_06894130.1| modification methylase bstVI [Clostridium difficile NAP08] gi|296877778|ref|ZP_06901804.1| modification methylase bstVI [Clostridium difficile NAP07] gi|296258759|gb|EFH05653.1| modification methylase bstVI [Clostridium difficile NAP08] gi|296431229|gb|EFH17050.1| modification methylase bstVI [Clostridium difficile NAP07] Length = 577 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 99/283 (34%), Gaps = 43/283 (15%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + ++S YE+ + + + + + TP+ +V L D + P + Sbjct: 6 QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250 D +CG G FL + + + D H +G +++ + Sbjct: 59 LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHSHILNYCIYGADIDEK 118 Query: 251 THAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 ++ ++ +++ +D K N+ +L +F Y + NPP+ + +K Sbjct: 119 AISILKDSLINKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + + + +D F + + L+ GG +++ L Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223 Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILS 411 ++R ++ N ++ IV L ++F +++ + Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFD 266 >gi|218440912|ref|YP_002379241.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] gi|218173640|gb|ACK72373.1| N-6 DNA methylase [Cyanothece sp. PCC 7424] Length = 523 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 48/253 (18%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E + F TP + +L D +T+ DP G G F + Sbjct: 14 EHRKKYAQFFTPYPIADFMAQWILGNTD---------CKTILDPAFGLGVFARAIFD--- 61 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + G E++ LI L+ N+ +S+D Sbjct: 62 ------NTDRNINITGLEIDS----------LILSQARKLNHHLNVNLYHQDYISQDWQE 105 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKL 346 + + NPP+ K + D KE K G+ ++ LFL+ +L Sbjct: 106 N--YDGIICNPPYFKFHDYDNKTNLKEIKQ------KLGITLTGFTNLYTLFLLKSIYQL 157 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL--PTDLFFRTNIA 404 GR A ++ S L + +I+ +L+++ + ++ L ++F Sbjct: 158 NP----NGRIAYIVPSEFLNSDYG----KKIKDYLIKDGKLRYVIILDFAENIFTDAITT 209 Query: 405 TYLWILSNRKTEE 417 + + + ++ K + Sbjct: 210 SSILLFAHDKKSQ 222 >gi|88858543|ref|ZP_01133185.1| probable site specific DNA-methyltransferase [Pseudoalteromonas tunicata D2] gi|88820160|gb|EAR29973.1| probable site specific DNA-methyltransferase [Pseudoalteromonas tunicata D2] Length = 490 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 43/217 (19%) Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 ++DP G + + E + +L Sbjct: 40 NPEGHMVFDPCVG------------------QEELLTPFIAANTKQAERFKLQSTDVLRH 81 Query: 263 RLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + QG L + ++NPP+ + + K+ Sbjct: 82 ------LSVYQSHFLQGDFLLTPKAQQTKASECDFIVANPPYNCHEVDYIKQHKADLKHK 135 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 G+ + +FL + +K G A + SS L S++R+ Sbjct: 136 FK---DVGV---HNMYSMFLAAMIDK----AADGCVIATICDSSFL----TAKVHSKLRK 181 Query: 380 WLLENDLIEAIVALPTDLFFRTNIA--TYLWILSNRK 414 +L + +I ++ PTDLF T + +L + Sbjct: 182 KILSSCIIHDLILCPTDLFLDQGANVRTCILVLQKGR 218 >gi|116513779|ref|YP_812685.1| adenine-specific DNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093094|gb|ABJ58247.1| Adenine-specific DNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 332 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +Y L+ + ++ A TP L +L D L P + Sbjct: 67 KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 L DP G+G L +A G + + E + + L++D Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 L+ + +S+ P G ++ R G Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +LF+ + L A +L + G G ++ WL + Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444 +AIV LP+ LF + I N + +V L +L S+ K Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326 >gi|300779250|ref|ZP_07089108.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910] gi|300504760|gb|EFK35900.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910] Length = 1702 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 54/308 (17%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE-----DFMTPRDVVHLATALLLDP 194 F + P+ +S+ +++ ++ S + ++ T +V L+ Sbjct: 283 FVSEDRKITLHPNVEISDDVKNICNQYKSGGTAKEGRGILDEYYTDSKIVEAIRNLI--- 339 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 FK + + +P+ GTG FL + D + E+ T + Sbjct: 340 -KDQFKNQKEI--SALEPSVGTGSFLYA----IKDLSVKINVTAF------EINDTTAKI 386 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + N + T + D +++ + NPP+G + + + Sbjct: 387 AKIFHPEADINLRSFETEFINEKGQKTDANDY--NEKYDLVIGNPPYG-EHRGLYKGLGE 443 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 E PKIS F + L+ G A+VL S L Sbjct: 444 E-------------PKISKYEDYFFKRSLDSLK----LNGVLAMVLPSGWLN-------- 478 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--KTEERRGKVQLINATDLWT 432 R+ LEN I LP+ F T I T + IL K E N ++ Sbjct: 479 ---RQKKLENVEIMKAYRLPSGAFAGTQIETDIIILKKSSVKITEDISDYFEKNPENILG 535 Query: 433 SIRNEGKK 440 IR + + Sbjct: 536 EIRKKSNR 543 >gi|330825340|ref|YP_004388643.1| N-6 DNA methylase [Alicycliphilus denitrificans K601] gi|329310712|gb|AEB85127.1| N-6 DNA methylase [Alicycliphilus denitrificans K601] Length = 995 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 43/260 (16%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+S +YEH R+ ++ TPR + L + + T+ DP Sbjct: 292 DVLSQVYEHFAHRYMPAKAKKTSIHYTPRAIAELVVDGVF----GATAQEKRHEVTVLDP 347 Query: 213 TCGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 G G FL + + + G ++ P + V + + Sbjct: 348 AVGAGVFLVLSFRRLVAETWMHTGSRPKRGTIRAILTKQLCGLDINPISIKVAALSLYLA 407 Query: 263 RLESDPRRDLSKNIQQGS-----------------------TLSKDLFTGKRFHYCLSNP 299 LE DP +++ +LS L + + L+NP Sbjct: 408 ALELDPEPQPLSDLRFERLFDKTLRCVDEKYLNGAKDAELGSLSMQLRSMGPYDIVLANP 467 Query: 300 PFGKKWEKDKDAVEKE--HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 P+ + + K +++ + + + L + F+ + GG Sbjct: 468 PWTRLPGRLKKDLDRTAYAADEKAPQGAKSLVPNQWPDLAFMWRSTQWCKP----GGVIG 523 Query: 358 IVLSSSPLFNGRAGSGESEI 377 +++ + LF+ Sbjct: 524 LLVHARLLFSSETAQARRHW 543 >gi|255008728|ref|ZP_05280854.1| putative DNA methylase [Bacteroides fragilis 3_1_12] gi|313146464|ref|ZP_07808657.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135231|gb|EFR52591.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1911 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 82/246 (33%), Gaps = 46/246 (18%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP +V+ + L + SPG DP+ GTG F++ Sbjct: 99 ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSA---FQPQF 147 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 S P +V + + +L R+ + + NI+ L Sbjct: 148 HSAAGNGPEIVAYEK------------DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F SN PFG D + NG RF S + F K Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S + + A +R++L+ + + V LP +LF T + + L Sbjct: 240 REGGILAFITSQGVMNSAMA----YPVRQYLMNQSRLLSAVRLPNNLFTDYAGTEVGSDL 295 Query: 408 WILSNR 413 IL Sbjct: 296 VILQKD 301 >gi|86150439|ref|ZP_01068664.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839034|gb|EAQ56298.1| type II restriction-modification enzyme [Campylobacter jejuni subsp. jejuni CF93-6] Length = 347 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 15/197 (7%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L + +++YI + F + + L+ A +L +I + F+ +L Sbjct: 146 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 205 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + N++E +++ + F TP + L + Sbjct: 206 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSLPLHE---MLSKNSKA 258 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLE 265 + D CG G FL N + + ++ +G E E V + Sbjct: 259 LRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 318 Query: 266 SDPRRDLSKNIQQGSTL 282 NI L Sbjct: 319 EI-------NILYADAL 328 >gi|325684438|gb|EGD26603.1| site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 332 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +Y L+ + ++ A TP L +L D L P + Sbjct: 67 KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 L DP G+G L +A G + + E + + L++D Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 L+ + +S+ P G ++ R G Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +LF+ + L A +L + G G ++ WL + Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444 +AIV LP+ LF + I N + +V L +L S+ K Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326 >gi|325996631|gb|ADZ52036.1| Adenine specific DNA methyltransferase [Helicobacter pylori 2018] Length = 1061 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 105/330 (31%), Gaps = 37/330 (11%) Query: 42 RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGST 94 + L+ AL + V + F + SF + +F T YSL + L Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHP 235 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDT 149 + +L + +S N I E DF + +++ LL +I + +++ Sbjct: 236 FEKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLN 295 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP------ 203 + YE + + ++ E + TP VV L + FK++P Sbjct: 296 DDKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSA 355 Query: 204 --GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPET 251 L D GTG FL +A + + +G E Sbjct: 356 LDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAP 415 Query: 252 HAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 +A+ + + + + I +TL + + Y NP F K+ Sbjct: 416 YAIAHLNLSQAFKEEFKKPLKENDVLKIILTNTLIQP---SEIVAYRGLNPIFEKELSNA 472 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + + E+ G + G + Sbjct: 473 QKIKKNENILIITGNPPYSGASENKGLFEW 502 >gi|308178806|ref|YP_003918212.1| site-specific DNA-methyltransferase (adenine specific) [Arthrobacter arilaitensis Re117] gi|307746269|emb|CBT77241.1| putative site-specific DNA-methyltransferase (adenine specific) [Arthrobacter arilaitensis Re117] Length = 1091 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 91/322 (28%), Gaps = 68/322 (21%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPT 213 ++YEH + + E + + F TP +VV T L + G+ + DP Sbjct: 316 HLYEHFLSAYNPERRKQSGSFYTPVEVVDSMTRLTDEALKKYLNTPEGLSADTVAVIDPA 375 Query: 214 CGTG--------GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRR 263 GTG ++ + S +G EL+ +V + IR Sbjct: 376 MGTGTYPLSVLRQVADNSSKYGQGAVSDAVTSAAQRLYGIELQSGPFSVAELRLTQAIRD 435 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKR------------------------FHYCLSNP 299 D N+ TL R C+ NP Sbjct: 436 YGGSL-PDGGLNLYVADTLEDPKSGSSRQLSYTLQLIAEQRQRANKMKVETPIQVCIGNP 494 Query: 300 PFGKKWEKDKDAVE-----------KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 P+ K E +E + + G+F L + + M + Sbjct: 495 PYKDKSEGLGGWIELGDPNRPNTPLDDFRLPGNGKFEYVLKNLYVYFWRWAMWKVFESTP 554 Query: 349 PPNGGGRAAIVLSS---SPLFNGRAGSGESEIRRWLLENDLIEAIVAL-------PTDL- 397 + G I + P F G +R+W+ EN I+ L P + Sbjct: 555 ASHHGVVCFITATGYLNGPGFRG--------MRQWIRENTSRGWIINLTPEGKQPPANTA 606 Query: 398 FFRTNIATYLWILSNRKTEERR 419 F + + + + Sbjct: 607 VFNIETPVSIALFIRDQANDPT 628 >gi|300854032|ref|YP_003779016.1| putative methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434147|gb|ADK13914.1| predicted methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 557 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 81/297 (27%), Gaps = 75/297 (25%) Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++ +YE + + E + F TP +V ++ Sbjct: 1 MHKWRDLSILGEMYERSMEK---EERKRKGSFYTPHYIVDYIVKNIMSN----LDLKKNP 53 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------------------- 242 + DP+CG+G FL + + S + Sbjct: 54 FIKVLDPSCGSGYFLVRVYEILMEKFSQNLETIRNTFNDKTYTIETEDGLKSIDGFHYWQ 113 Query: 243 -------------HGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTL------ 282 +G +++ + + + + + NI ++L Sbjct: 114 QENLSFHILKKCIYGADIDSIAVELTKINLSKVSGININM----EDNIICCNSLIKWNQI 169 Query: 283 ------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 S F ++ Y L NPP+ K+K +E + Sbjct: 170 DNVEKYKESNIQSVVKFWNTKYDYVLGNPPWVSLSRKNKMNIEDGLLKYYSENYNGNTYL 229 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + F+ L+ GGR V+ SE+R+ LLEN I Sbjct: 230 PNLYEY-FIKRSMEILKP----GGRFGFVVPD----RLSRNLQYSELRKSLLENYNI 277 >gi|37525126|ref|NP_928470.1| hypothetical protein plu1158 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784552|emb|CAE13452.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 657 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 10/137 (7%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E A L ++ S + + + + ++ L ++ + TP V H+ Sbjct: 484 EDAFRLSRLL---SEVIMGLEYEAGDFLGAVFMAL-----ELGNDQVGQYFTPFPVSHMM 535 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + L A T+ DP CG GG + + + G + ++ ++ Sbjct: 536 ARMKLAEGLARLGSGEHEYITVSDPDCGAGGMIIAMYQTMLEAGFN--PQQQMLAFCVDI 593 Query: 248 EPETHAVCVAGMLIRRL 264 +P + + + + Sbjct: 594 DPVAAMMTYIQLSLLGV 610 >gi|19908492|gb|AAM02924.1|AF347071_1 restriction-modification system LlaBIII [Lactococcus lactis] Length = 1584 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 94/305 (30%), Gaps = 43/305 (14%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 E F+ LE LY+ + +++ +Y+ + +E Sbjct: 810 LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 865 Query: 175 EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232 TP +VV + D F K + DP GTG F+ + ++ + Sbjct: 866 GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDA 925 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282 + H E+ ++ + + E + + + I T Sbjct: 926 GEISLADITRKFMKELHANEIVLLSYYIAAINIESTFDEINGDEEGYVPFEGIVLTDTFE 985 Query: 283 ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDK-DAVEKEHKNGELG- 322 ++D F + NPP+ K + + + + ++ + Sbjct: 986 STETEDTLDDDYFGTNDERLKRQQKVPITVIMGNPPYSAKQKNEDGNQIRTTYEKLDASL 1045 Query: 323 -RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 ++ + LF ++ + G + ++S + +G A G +R+ Sbjct: 1046 QNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITNNSFI-DGNAMDG---MRQ 1101 Query: 380 WLLEN 384 LLE Sbjct: 1102 SLLEE 1106 >gi|163869203|ref|YP_001610455.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161018902|emb|CAK02460.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1652 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 98/369 (26%), Gaps = 49/369 (13%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 + L R + + + + + + + +++ S + L Sbjct: 757 FDRFLAELRDDLNDTITEADAIEMLAQHIITRPVFQVLFEGYQFTRENPVSRAMQRML-- 814 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + ++ + LEK Y K + P ++ +Y+ Sbjct: 815 ----------DVLDEANLDKESKDLEK---FYASVKLRASGITDPKAKQRLIV-ELYDKF 860 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-IRTLYDPTCGTGGFLT 221 R E TP +VV + D F ++ G + DP GTG F+T Sbjct: 861 FRYAFPRTVEKLGIVYTPVEVVDFILNSVNDILKNEFGQTLGSSGVHIMDPFTGTGTFIT 920 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQG 279 + K H E+ + + + L + I Sbjct: 921 RLLQSGLIKPEEMKHKFCHEIHANEIVLLAYYIAAINIETTYHGL-MGGGYVPFEGICLT 979 Query: 280 STL-------------------SKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKN 318 T + + NPP+ G+K E D K Sbjct: 980 DTFQLYEQDKDLISDLLMANSTRRSRQKELDIRVIVGNPPYSSGQKSENDNAQNIDYPKL 1039 Query: 319 GELGRFGPGLPKIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 R + +G + G V ++ + NG + +G Sbjct: 1040 DRRIRETYAAQSKASNVNGLYDSYIRAMRWATDRIKSSGVIGFVTNAGFI-NGYSMNG-- 1096 Query: 376 EIRRWLLEN 384 +R+ L E Sbjct: 1097 -LRKELNEE 1104 >gi|325998221|gb|ADZ50429.1| Adenine specific DNA methyltransferase [Helicobacter pylori 2017] Length = 1060 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 105/330 (31%), Gaps = 37/330 (11%) Query: 42 RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGST 94 + L+ AL + V + F + SF + +F T YSL + L Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHP 235 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDT 149 + +L + +S N I E DF + +++ LL +I + +++ Sbjct: 236 FEKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLN 295 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP------ 203 + YE + + ++ E + TP VV L + FK++P Sbjct: 296 DDKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSA 355 Query: 204 --GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPET 251 L D GTG FL +A + + +G E Sbjct: 356 LDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAP 415 Query: 252 HAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 +A+ + + + + I +TL + + Y NP F K+ Sbjct: 416 YAIAHLNLSQAFKEEFKKPLKENDVLKIILTNTLIQP---SEIVAYRGLNPIFEKELSNA 472 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + + E+ G + G + Sbjct: 473 QKIKKNENILIITGNPPYSGASENKGLFEW 502 >gi|325298274|ref|YP_004258191.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM 18170] gi|324317827|gb|ADY35718.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM 18170] Length = 234 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 31/166 (18%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +IY + + F TP + L TA + + + DP Sbjct: 86 DPFGDIYMAF---SSAGSKQAQGQFFTPAPICELMTACAGTGEH-------QPGQRMGDP 135 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV + G G+++ + V ML+ Sbjct: 136 TCGSGRLLLAW--HVRNLGG--------YLVGEDINRTCCLMTVCNMLVHG--------G 177 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCL---SNPPFGKKWEKDKDAVEKE 315 + +L + F + + P +K +++ +E Sbjct: 178 VGEVIWHDSLQPEKFNDGWLVNPVLTHTGIPTIRKMSEEEYRKSRE 223 >gi|295697974|ref|YP_003602631.1| hypothetical protein ECL_A136 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060086|gb|ADF64823.1| hypothetical protein ECL_A136 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 263 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 17/168 (10%) Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 E+ + S I + L + + F + + +Y ++ Sbjct: 74 ENIENSRRICARYQPDDLDAMKQLFCLLVEGLAGDIHDFLGALYME-----QELGADEMG 128 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + +P + L LL+ K TL +P CG+ G + +A+ G + Sbjct: 129 QYFSPSCISRLMAGLLMPGAQETIKRE--GWMTLDEPACGSAGMVIAFAYWMAEAGYNPS 186 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +++P + + + + + G+TL+ Sbjct: 187 EQLYAT--CTDIDPMVADMAFIQLALLGI--------PAKVVTGNTLT 224 >gi|256845253|ref|ZP_05550711.1| N-6 DNA methylase [Fusobacterium sp. 3_1_36A2] gi|256718812|gb|EEU32367.1| N-6 DNA methylase [Fusobacterium sp. 3_1_36A2] Length = 871 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 69/526 (13%), Positives = 145/526 (27%), Gaps = 123/526 (23%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFGSEVS--- 171 F + L ++++ + S + + + + +I+E I F S+++ Sbjct: 322 FKADEDLDTLIIDDIVFEKMQAISEYDFDSELNENI-LGHIFEQSISDIEEFKSQINEQD 380 Query: 172 --------EGAEDFMTPRDVVHLATA--------------------LLLDPDDALFKESP 203 + F TP+ + +L D D ++ Sbjct: 381 FDVKKGKRKKDGIFYTPKYITKYIVENTINYWLEDKRIELGEDKLPILTDEDYNHKYKNK 440 Query: 204 G------------------------MIRTLYDPTCGTGGFLTDAMNHVADC--------- 230 + DP CG+G FL A + Sbjct: 441 TSSVKVFSENYKKHIDFWKKYKEAIKNIKILDPACGSGAFLITAFEFLLKQTNMIDEKLL 500 Query: 231 ---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280 + G +L E+ + + ++ + + NI+ G+ Sbjct: 501 DLTGEQDLFSDTTRYILENNIFGVDLNRESVEITKLSLWLKSANKNKTLTTLENNIKCGN 560 Query: 281 TLSKDL-----------------FTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELG 322 +L KD F + F + NPP+ ++ K+ +++ G Sbjct: 561 SLIKDKEFVKDLVFDWEKEFPEVFKNRGFDIVIGNPPYVRQESIKEIKPYLEQNYRVYTG 620 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 ++D F N L+ G ++S+ F GE ++R +LL Sbjct: 621 --------VADLYCYFYELGYNLLKDNGYLG-----FITSNKWFR--TKYGE-KLREFLL 664 Query: 383 ENDLIEAIVAL-PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK- 440 IV T +F + + + I K + +Q+ + + K+ Sbjct: 665 NYTEFYNIVDYNGTKVFEGATVDSNILIFKKNKVKNSIFSLQIADTIPVEYKQEKLSKES 724 Query: 441 ---RRIINDDQRRQILDIYVSRENGKFSRMLD-----YRTFGYRRIKVLRPLRMSFILDK 492 D + +I I + S F + + L + + Sbjct: 725 FIFINQNEDFIKEKIERIGKPLKEWDISMNYGIKTGLNEAFIIDKETRDKLLEEDYK-NS 783 Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + L K + L +L + K+ Sbjct: 784 EIIKPLLRGKDIEKYNILFADKYLIYIPWHFPNTDNPKSFIENEKD 829 >gi|312977660|ref|ZP_07789407.1| putative modification methylase [Lactobacillus crispatus CTV-05] gi|310895399|gb|EFQ44466.1| putative modification methylase [Lactobacillus crispatus CTV-05] Length = 333 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 100/318 (31%), Gaps = 42/318 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + ++ + + I+ D + + + ++ L + ++ TP + + Sbjct: 50 DEKTVAELSQKYQAIDY--DEISQKEKAQVFTFLTLKAVNDDGFDVNQMPTPPAIATVVA 107 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 L+ + DP GTG L ++ + G + + Sbjct: 108 MLMHKLLKDQ-------KMEIVDPAVGTGNLLFSIISQLKALNHS---KDNYQLVGIDND 157 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 + + + + D + L + +S+ P G + D Sbjct: 158 EDM--LSLTDVAAHLNNIDIE------LYHQDALMP--WMCPNADAIVSDLPVGY-YPVD 206 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 ++A E++ + F +L + + N L+ G A +V+ S L Sbjct: 207 ENAKNFENQAKKGHSF---------AHLLLIEQIINNLKP----NGYAFLVVPKSIL--- 250 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 +G ++ WL + ++AIV LP D+F + + N E + +V L Sbjct: 251 -SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFNPKSVLVFQNHGDEAKASEVLLTKLG 309 Query: 429 DLWTSIR--NEGKKRRII 444 L K Sbjct: 310 SLKKEETLIQFNVKLNEW 327 >gi|165933915|ref|YP_001650704.1| type I restriction-modification system methylation subunit [Rickettsia rickettsii str. Iowa] gi|165909002|gb|ABY73298.1| type I restriction-modification system methylation subunit [Rickettsia rickettsii str. Iowa] Length = 152 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 11/154 (7%) Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 PF + +K + +N F G+ ++G ++H L+ GGR A Sbjct: 1 MPFSQAITKKTSKNGKIITENHITFLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416 +V+ LF + ++LL ++ +++LP F T + T + + Sbjct: 56 LVVPEGFLFRKDTSAVH----QFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFTMHINR 111 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 + + + + N+ +K IND RR Sbjct: 112 IIKKNIGFMRLRISALRLDNKKRKIVGINDLNRR 145 >gi|104773773|ref|YP_618753.1| hypothetical protein Ldb0685 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422854|emb|CAI97514.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 332 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +Y L+ + ++ A TP L +L D L P + Sbjct: 67 KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 L DP G+G L +A G + + E + + L++D Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 L+ + +S+ P G ++ R G Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +LF+ + L A +L + G G ++ WL + Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLLPQNMLTGTVG---ADFMPWLASKVYL 267 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444 +AIV LP+ LF + I N + +V L +L S+ K Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326 >gi|85713748|ref|ZP_01044738.1| putative methylase [Nitrobacter sp. Nb-311A] gi|85699652|gb|EAQ37519.1| putative methylase [Nitrobacter sp. Nb-311A] Length = 507 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 83/273 (30%), Gaps = 37/273 (13%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + +Y ++ ++V + TP V L ++ L + DP Sbjct: 40 IGTLYTLML---PTKVRRSQATYFTPPGVADAVVELAIEAGFDL------AGDDVLDPAA 90 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G FL+ +A G L +A + + L + Sbjct: 91 GGAAFLSTIAGRMAAVGLAANEVAF------RLNGIEIDAGLATLSRHLIADRLGAALPR 144 Query: 275 NI-QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 ++ G L + + ++NPP+G+ D GE R I+ Sbjct: 145 DVVIIGDALR--VQIPASYGLVIANPPYGRMSIDDVH--------GEAWRRVAHTGHINK 194 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI--V 391 ++ F + GG A+V+ SS F G +R+++ + I + Sbjct: 195 YAL-FAELCFRNAKP----GGVVALVIPSS--FRAGPLYG--RMRKFIRSQGEVLTIGSI 245 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 A +F + I K V+ Sbjct: 246 ADRDGIFLDVAQDISVLIARKGKPHRAEAMVRF 278 >gi|308513269|ref|YP_003933665.1| hypothetical protein HMPREF0868_0152 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|307346975|gb|ADN43952.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 59 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 5/35 (14%), Positives = 13/35 (37%) Query: 4 FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPF 38 + L + +W+ L G + + + +L Sbjct: 1 MAVKKSELYSILWEACNKLRGGVEPSRYKDYVLVL 35 >gi|332672840|gb|AEE69657.1| probable adenine specific DNA methyltransferase [Helicobacter pylori 83] Length = 843 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 103/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y P F + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SETIAYRGLQPIFETELLNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495 >gi|296270474|ref|YP_003653106.1| N-6 DNA methylase [Thermobispora bispora DSM 43833] gi|296093261|gb|ADG89213.1| N-6 DNA methylase [Thermobispora bispora DSM 43833] Length = 689 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 91/304 (29%), Gaps = 59/304 (19%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-RFGSEVSEGAEDFMTPRDVVHL 186 + AG L + +E L+ R V++ D +TP ++ L Sbjct: 141 DDAGWLASVVDELIEAAWG--------CRQAFERLLAVRGRLNVADLYLDAVTP-ELARL 191 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 L + A + DP G L + +++ V G E Sbjct: 192 IAGLSGAREHAE----EFGTVRVADPAARAGDLLVAVLGQLSE-------DSFPVFTGAE 240 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 +P + +++ + + ++ P+ E Sbjct: 241 PDPFLARIARRRLVVHGIPPHDID-----------IRCPGDPPLPADVLVTRLPYVPLEE 289 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + ++ K GL G G A +++ P + Sbjct: 290 RPQENPLATVKELTD-----GLAP---GQ-------------TTVVLGPADVLVDGLPPY 328 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLI 425 A R LL + +EA++ LP L FR T LW+L + +G+V L Sbjct: 329 RPAAR-----TRNELLASGRVEAVIHLPGGLVPFRPGYQTALWVLRREEPSPWQGRVLLA 383 Query: 426 NATD 429 + +D Sbjct: 384 DVSD 387 >gi|308183463|ref|YP_003927590.1| adenine specific DNA methyltransferase [Helicobacter pylori PeCan4] gi|308065648|gb|ADO07540.1| adenine specific DNA methyltransferase [Helicobacter pylori PeCan4] Length = 1154 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + L+ AL + + + + + E F + T L+ L Sbjct: 174 KYLKDALIQYHEEQQVSSIFKNFKEYLYEELSFEDFSDAFAQTL--TYSLFLAKLNHPFE 231 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + + + +S N I E DF + +++ LL +I + +++ Sbjct: 232 KIDFNNVRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILSLINHVDMDSIIKDLNDD 291 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 292 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTRFKDAPLGLKSALD 351 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 352 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 411 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + + I +TL + P F K+ + ++ Sbjct: 412 IAHLNLSQAFKQEFKKPLKENDALKIILTNTLIQPSEIAADRGLQ---PIFEKELKNAQE 468 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G + G + Sbjct: 469 IKKNENILIITGNPPYSGASENKGLFEW 496 >gi|117925307|ref|YP_865924.1| type II DNA modification enzyme [Magnetococcus sp. MC-1] gi|117609063|gb|ABK44518.1| putative type II DNA modification enzyme [Magnetococcus sp. MC-1] Length = 1354 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 29/218 (13%) Query: 91 LGSTNT-RNNLESYIASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L + +L I + S +AK E ++ + E + + + I++ Sbjct: 382 LDAAEIDNAHLLEAIRAISFHAKGKALERINYRD-MGTEELGSVYESLLELHPRIDVETA 440 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---- 204 + + + + + + TP +V+ L+P Sbjct: 441 PWQFGFVGDDEDEKSGKGSD--RKLTGSYYTPPSLVNELIKSALEPVLERTIRDNPTDPV 498 Query: 205 ---MIRTLYDPTCGTGGFLTDAMNHV----------------ADCGSHHKIPPILVPHGQ 245 + + DP CG+G FL A H+ + +G Sbjct: 499 GALLKLKVCDPACGSGHFLLAAARHMGAEIARLTADSDTPGEQQRQHALREVVRHCIYGV 558 Query: 246 ELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282 + P + +C + I LE P L I+ G +L Sbjct: 559 DKNPLSVELCKTALWIETLEPGRPLTFLDHRIKCGDSL 596 >gi|325125435|gb|ADY84765.1| Putative modification methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 332 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +Y L+ + ++ A TP L +L D L P + Sbjct: 67 KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 L DP G+G L +A G + + E + + L++D Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 L+ + +S+ P G ++ R G Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +LF+ + L A +L + G G ++ WL + Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444 +AIV LP+ LF + I N + +V L +L S+ K Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVAFNIKLNEW 326 >gi|28373198|ref|NP_783835.1| putative YeeA protein [Lactobacillus fermentum] gi|28273041|emb|CAD59898.1| putative YeeA protein [Lactobacillus fermentum] Length = 932 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 51/352 (14%), Positives = 95/352 (26%), Gaps = 85/352 (24%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNI---DLESFVKVAGYSFYNTSEYSLSTLGST 94 L + + + + + ++ DL KV Y Sbjct: 217 LVFLLYADDSNLFGKEDIFQAFIERREPRDIRRDLSELFKVLDQPEEQRDPYL------- 269 Query: 95 NTRNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + N +Y+ FSD I F L ++ +G + Sbjct: 270 DDEFNQFAYVNGGMFSDE-NVIIPQF-----------TDELKRLIVEDAGRGFDWSGISP 317 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKESPGMIR 207 + ++E + E T + +H L D D + R Sbjct: 318 TIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDPLFLNDLHDEFDKIQNMGNRRQR 374 Query: 208 --------------TLYDPTCGTGGFLTDAMNHVADCGSH------------------HK 235 +DP CG+G FLT+ + + Sbjct: 375 VTRAKAFRDKLGKLKFFDPACGSGNFLTETYLSLRKMENECLRIIVGNQGALALTDESEP 434 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIR-------------RLESDPRRDLSKNIQQGSTL 282 I +G E+ +V M I + D + +I +G+ L Sbjct: 435 KVKIQNFYGIEINDFAVSVARTAMWIAESQMWEQTKDITFANKDFLPLDSNDSIYEGNAL 494 Query: 283 ---SKDLFTGKRFHYCLSNPPF---GKKWEKDKDAVEKEHKN--GELGRFGP 326 D+ Y + NPPF + ++ K +++E + G+F Sbjct: 495 RMDWNDIVKPYELDYIMGNPPFVGYSLQTKEQKQDIKQEFFKYTDKYGKFDY 546 >gi|39936439|ref|NP_948715.1| DNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|39650294|emb|CAE28817.1| possible DNA methyltransferase [Rhodopseudomonas palustris CGA009] Length = 1091 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 83/324 (25%), Gaps = 64/324 (19%) Query: 43 RLECALEPTRSAVREKYL------AFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGST 94 RL L R V E+ + F + F + + L + Sbjct: 175 RLCRLL---RDEVIEQLELGSAGLTELAKDWRHLLFPQADNAQFADGYAQAVTFGLLVAR 231 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG--------LLYKICKNFSGIELH 146 +L I + + + + + + L L + + + H Sbjct: 232 AKDISLIKGIDAAAQELRK--SNTLIGTALRLLTDDDDNQQALKTSLGTLTRVLGEVNWH 289 Query: 147 PDTVPDRVMS-NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG- 204 + YE + + + + + + TP +VV L + P Sbjct: 290 VISKDKPEAWLYFYEDFLEVYDNTLRKKTGSYYTPPEVVAAMVRLADEALRGELFGRPKG 349 Query: 205 ---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------IPPILVPHGQELEPETH 252 T+ DP GTG FL + +A+ + G EL+ Sbjct: 350 FASPDVTVADPAVGTGTFLLGVLRKIAETVKDDEGAGAVRGAIEAAAKRLFGFELQFGPF 409 Query: 253 A------VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------------------- 286 A + L+ + N+ TL Sbjct: 410 AVAQLRLIAEMQALVATKTNPLPDIPELNLFITDTLGNPFVEEESLGQVYEPIAKSRREA 469 Query: 287 ---FTGKRFHYCLSNPPFGKKWEK 307 K + NPP+ +K + Sbjct: 470 NAVKKDKPITVVIGNPPYKEKAKG 493 >gi|298369068|ref|ZP_06980386.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str. F0314] gi|298283071|gb|EFI24558.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str. F0314] Length = 273 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 33/215 (15%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLE 128 SF+ S Y LS + + I F+ + I + + + ++ Sbjct: 36 QSFH--SGYRLSEVFGDFIEVATIALINRFTFDGDWEQREERYHEIRKKYT-EAEFGKMP 92 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 + +L K+ + F I+ + ++ IY L S+ + TP + + Sbjct: 93 E--ILAKLVEKF--IKAGQSGTYEDILGEIYMLL-----DLGSQSKNQYFTPFYICRMMA 143 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 ++ + + +P ++ +P+CG+G + + G H V + Sbjct: 144 QIVGEGLADKLEGNP--FVSIMEPSCGSGANIIAFAETIRLKGFDHLQKMAAVAIDID-- 199 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +C A M ++ + +K I G+ L+ Sbjct: 200 -----ICCARMCF--IQCELLGIPAK-IIHGNALT 226 >gi|317182420|dbj|BAJ60204.1| Type II modification enzyme [Helicobacter pylori F57] Length = 597 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 28/207 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V + ++E+L+ + E TP+ + + L + DP Sbjct: 66 DVFNALFENLLDQ---ERKTKFGMIFTPKYIADFICNETFAKFEDLNNIK------VIDP 116 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLES---DP 268 CG G FL A+ + G +++ + V +L++ + + Sbjct: 117 CCGCGIFLISAIEQIKSKTKKSIKQIIKNQIFGLDIDND--NVKKVILLLKIMGLVYNEN 174 Query: 269 RRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGR 323 D NI+ +L D F + NPP+ +K +++ + G Sbjct: 175 IEDCDINIRHCDSLITDWKLAFDIDFDCIIGNPPYINPHSLSKKQTAFLKQNFQTTSSGV 234 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPP 350 F F+ ++ Sbjct: 235 FNIF--------YAFIELGMKFIKPNG 253 >gi|302345456|ref|YP_003813809.1| hypothetical protein HMPREF0659_A5726 [Prevotella melaninogenica ATCC 25845] gi|302150035|gb|ADK96297.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 50 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 625 DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659 D+ ++G E F + FY Y+P R L I A++K Sbjct: 2 DRSKDKIGCEFPFTKLFYVYRPMRDLDAILADIKR 36 >gi|309806208|ref|ZP_07700224.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] gi|312874421|ref|ZP_07734451.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] gi|308167427|gb|EFO69590.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] gi|311090033|gb|EFQ48447.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] Length = 333 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F++ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPIDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLNPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|225868542|ref|YP_002744490.1| type II restriction enzyme-methylase [Streptococcus equi subsp. zooepidemicus] gi|225701818|emb|CAW99252.1| type II restriction enzyme-methylase [Streptococcus equi subsp. zooepidemicus] Length = 990 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 43/316 (13%), Positives = 88/316 (27%), Gaps = 80/316 (25%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 TP+++ L + + + D CG+G FL A ++ + Sbjct: 344 FGAVTTPKEIADLIVKESFEIRSEKNEIILEE-FKIADICCGSGIFLLSAYEYLQNIIYD 402 Query: 234 ----------------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 K G +++ VC +L+ L Sbjct: 403 FSIKRLQQSLDDGVLVKEQNSYQLSFKTKKELLKSAIFGVDIDLSAVEVCKFSLLLSCLR 462 Query: 266 S------------DPRRDLSKNIQQGSTLSKDLF-------------------------- 287 + +L NI+ G++L D F Sbjct: 463 NISFTELAQIKQESLLPNLDNNIKFGNSLVDDKFYDYYSTSNNSDNLLDIVGKISPFDFK 522 Query: 288 ----TGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 +F + NPP+ + + +E ++ + D LF+ Sbjct: 523 EEFGKDIKFDLIVGNPPYTRSQKLAKYSPIEYQYFKSLASNYKSAQISSLDKYHLFVERG 582 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRT 401 + L G ++ + + ++ R L EN ++ I+ LF Sbjct: 583 LHLLRENS---GVLGYIIPNRFI----KEKNQNTFRHILFENRCVKKIINYNEIQLFHGV 635 Query: 402 NIATYLWILSNRKTEE 417 + T L L++ + + Sbjct: 636 SAYTCLLFLTSDRNHK 651 >gi|145223790|ref|YP_001134468.1| DNA methylase [Mycobacterium gilvum PYR-GCK] gi|145216276|gb|ABP45680.1| DNA methylase [Mycobacterium gilvum PYR-GCK] Length = 1189 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 42/312 (13%), Positives = 86/312 (27%), Gaps = 68/312 (21%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + + Y+ L + TP V ++P + P T+ DPTC Sbjct: 188 LGDAYQDL----SEHAKKTYALLQTPEFVEEFILDQTMEP---ALADRPLQGFTVIDPTC 240 Query: 215 GTGGFLTDAMNHVADC---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 G+G FL A + + +G ++ P A+ +L+ L Sbjct: 241 GSGHFLLGAFARLHQRWQREAPALGARELVAKALDGIYGVDINPFAVAIARFRLLVAALH 300 Query: 266 SDPRRDLSKNI------QQGSTL-------------------SKDLFTG---------KR 291 + + +NI G +L D + Sbjct: 301 AAGDSSIEQNIGYTPHLAAGDSLLWGANQQLLPEDLLAGPAIRADATEDADALRSILQRE 360 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + NPP+ + +A ++ + ++ +P + L+ Sbjct: 361 HDVVVGNPPYITPKDAALNATYRKLYSTTHRQYALTVP------FMELLFRLAHGSAGTR 414 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL----IEAIVALPTDLFFRTNIATYL 407 G + S+S L E L+E L + ++ T + Sbjct: 415 PAGWIGQITSNSFLKR--------EFGSKLIEEFLPTVDLREVIDTSGAYIPGHGTPTVI 466 Query: 408 WILSNRKTEERR 419 + ++ Sbjct: 467 IVGRKQRPSSDT 478 >gi|315653343|ref|ZP_07906265.1| DNA methyltransferase [Lactobacillus iners ATCC 55195] gi|315489268|gb|EFU78908.1| DNA methyltransferase [Lactobacillus iners ATCC 55195] Length = 333 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 103/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F+ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLNPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|109946823|ref|YP_664051.1| putative adenine specific DNA methyltransferase fragment 1 [Helicobacter acinonychis str. Sheeba] gi|109714044|emb|CAJ99052.1| putative adenine specific DNA methyltransferase fragment 1 [Helicobacter acinonychis str. Sheeba] Length = 864 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 107/327 (32%), Gaps = 34/327 (10%) Query: 42 RRLECALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97 + L+ AL + V + F + SF + +F T YSL + L + Sbjct: 170 KYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSD-AFAQTLTYSLFLAKLNHPFEK 228 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPD 152 NL++ +S N I E DF + +++ LL +I + +++ + Sbjct: 229 INLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDK 288 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204 + YE + + E+ E + TP VV L FK++P Sbjct: 289 DPYLHFYETFLSAYDPELREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDN 348 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254 L D GTG FL +A + + +G E +A+ Sbjct: 349 ENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAI 408 Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + + + + + I +TL + + Y NP F ++ ++ Sbjct: 409 AHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQP---SEIAAYRGLNPIFEEELLNAQEI 465 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338 + E G + G + Sbjct: 466 KKDEKILIITGNPPYSGASSNKGLFEW 492 >gi|218884514|ref|YP_002428896.1| predicted endonuclease-methyltransferase fusion protein [Desulfurococcus kamchatkensis 1221n] gi|218766130|gb|ACL11529.1| predicted endonuclease-methyltransferase fusion protein [Desulfurococcus kamchatkensis 1221n] Length = 1241 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 80/253 (31%), Gaps = 31/253 (12%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 + Y A + E G FY + L + L +A IF Sbjct: 247 VQTYYALILKLLAAEVVYLYGGGRFYKSYIAELDDAYTGGGVQALRKALAKLESG--GIF 304 Query: 116 EDFDFSSTIA---------RLEK--AGLLYKICKNFSGIELHPDTVP----DRVMSNIYE 160 + F + + L++ A +L +I + + E + ++ +Y+ Sbjct: 305 KQFGIENFLEGDYFSWYLEELDQILADVLAEIARKLANYEPATPQLEPESARDLLKRLYQ 364 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-----GMIRTLYDPTCG 215 HL+ +V ++ TP + + D L + + + DP CG Sbjct: 365 HLV---PEDVRHNLGEYYTPDWLADFLLDRVGLSRDRLNELGSEYSLRPLEIRVLDPACG 421 Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLIRRLESDPR 269 +G FL + + D H + ++ G +L P L+ + R Sbjct: 422 SGTFLVRYIARLRDYAREHFLEDVMLDYLLENIVGYDLNPLAVLAARTNYLLMIADLPRR 481 Query: 270 RDLSKNIQQGSTL 282 + + ++ Sbjct: 482 GSIEIPVYLADSI 494 >gi|145631143|ref|ZP_01786917.1| possible type I restriction enzyme M subunit [Haemophilus influenzae R3021] gi|144983241|gb|EDJ90732.1| possible type I restriction enzyme M subunit [Haemophilus influenzae R3021] Length = 253 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 23/191 (12%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 ++ L ++ F+ I + + +++ L E + TP + HL Sbjct: 62 DEKQALSRL---FNIIVEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLM 113 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 A+ L +L K TL +PTCG+G + +A N++ + + ++L Sbjct: 114 AAVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDL 169 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWE 306 + +C M + + + + G+TL + + + + N + KK E Sbjct: 170 DFTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLE 219 Query: 307 KDKDAVEKEHK 317 E E++ Sbjct: 220 SADSYTEAEYQ 230 >gi|68248686|ref|YP_247798.1| type I restriction enzyme M subunit [Haemophilus influenzae 86-028NP] gi|68056885|gb|AAX87138.1| possible type I restriction enzyme M subunit [Haemophilus influenzae 86-028NP] gi|301168729|emb|CBW28320.1| possible type I restriction enzyme M subunit [Haemophilus influenzae 10810] Length = 253 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 23/191 (12%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 ++ L ++ F+ I + + +++ L + + TP + HL Sbjct: 62 DEKQALSRL---FNIIVEALEHKTYDFLGSVFMSL-----DLGDQYKAQYFTPSHIAHLM 113 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 A+ L +L K TL +PTCG+G + +A N++ + + ++L Sbjct: 114 AAVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDL 169 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWE 306 + +C M + + + + G+TL + + + + N + KK E Sbjct: 170 DFTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLE 219 Query: 307 KDKDAVEKEHK 317 E E++ Sbjct: 220 SADSYTEAEYQ 230 >gi|73669701|ref|YP_305716.1| type II restriction enzyme, methylase subunit [Methanosarcina barkeri str. Fusaro] gi|72396863|gb|AAZ71136.1| type II restriction enzyme, methylase subunit [Methanosarcina barkeri str. Fusaro] Length = 836 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/465 (14%), Positives = 134/465 (28%), Gaps = 112/465 (24%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 IF+ D ++ + +L I K + V R++ IYE + + V Sbjct: 99 GIFDFIDDEFSLKFVINDEILVNIFKELYYPNSPYSFSVVDARILGEIYEMFLAKEAHIV 158 Query: 171 SEGA-------------EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 ++ + TP+ +V + P + D +CG+G Sbjct: 159 NKSSIEIVEKPEVIESRGIVPTPKYIVDAIIERTVKPKCEGKNPIELSQLKIADISCGSG 218 Query: 218 GFLTDAMNHVADCGSHHKIPPI----------------------------LVPHGQELEP 249 FL ++ + I G +++ Sbjct: 219 SFLLATYEYLLNYYLEWYIQDGVEKHTNELFEHTTGTFYLRLEEKCKILLNNIFGVDIDS 278 Query: 250 ETHAVCVAGMLIRRLESDPRRDLS---------------KNIQQGSTLSK---------- 284 + V G+L++ LE+ ++ KNI G++L Sbjct: 279 QAVEVTKFGLLLKTLENVNSSVVATLSTRSRTGVLPKLSKNIICGNSLVDSNYFYFEPKA 338 Query: 285 --------------------DLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGR 323 D+ F + NPP+ + E E+ + Sbjct: 339 KVQENIYYRVNPFDWNNEFKDVIEKGGFDVIIGNPPYVRIQNIVKYSPKEVEYYKSKYSP 398 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F D LF+ L G ++ E+RR + Sbjct: 399 FVTANKDNIDKYYLFIERAKYLLNSE----GILGYIVPHKFF----KIKSGQELRRLISS 450 Query: 384 NDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 N + IV +F T + +L +++ +E KV ++ D W + +N Sbjct: 451 NKNLSEIVHFGVEQVFGTKTTYTCILVLQSKELDEF--KVNFVSNIDDWRNGKNV----- 503 Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487 Q + Y++ + + ++RI P+++ Sbjct: 504 -----QIEKYKSNYIN--ETPWIFLHPKLDKLFKRINSENPVKLE 541 >gi|157826495|ref|YP_001495559.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii OSU 85-389] gi|157801799|gb|ABV78522.1| Type I restriction-modification system methyltransferase subunit [Rickettsia bellii OSU 85-389] Length = 183 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + + L+ G+A +V+ + +R+ +L+N I+AI++LP F Sbjct: 1 MEWIVKALKP----NGKAFVVVPDGIFNRQN----DKNLRQLILDNCFIDAIISLPLKTF 52 Query: 399 FRTNIATYLWILSNRK--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 F T TY+ ++ + ++ + V +++ + R I D ++ ++++ Sbjct: 53 FTTPKKTYILAITKKHNISQIQTDPVFTYLCSEIGE---SRDIYRFDIEQDDLKEAVNLF 109 Query: 457 VSRENGKFSRMLDYRTF 473 + + K Sbjct: 110 NAFKGSKKYFANINHDK 126 >gi|268318892|ref|YP_003292548.1| putative type II restriction endonuclease [Lactobacillus johnsonii FI9785] gi|262397267|emb|CAX66281.1| putative type II restriction endonuclease [Lactobacillus johnsonii FI9785] Length = 923 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 74/267 (27%), Gaps = 70/267 (26%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 Y+ FSD I F+ + L LL K F E+ P + ++E Sbjct: 270 YVNGGMFSDENIEIPP---FTDELRDL----LLSKASDEFDWSEISPT-----IFGAVFE 317 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIR------------ 207 + + T + +H L D E + + Sbjct: 318 STL---NPDTRRQGGMHYTSIENIHKVIDPLFLDELKDELNEIKKVKQPAKLKKKASAFQ 374 Query: 208 ------TLYDPTCGTGGFLTDAMNHVADC------------------GSHHKIPPILVPH 243 T +DP CG+G FLT+ + I + Sbjct: 375 DKLANLTFFDPACGSGNFLTETYLQLRRLENDAIKLIYPNPSLDVGQAQDIIKVSIQQFY 434 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTL---SKDLF 287 G E+ +V + I + NI +G+ L D+ Sbjct: 435 GIEINDFAVSVAKTALWIAESQMLEETKDIFYADWDFLPLKTYTNIHEGNALRIYWNDVL 494 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEK 314 HY + NPPF + +D E Sbjct: 495 PNYACHYVMGNPPFIGTKYESEDQKED 521 >gi|315037968|ref|YP_004031536.1| Adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1112] gi|312276101|gb|ADQ58741.1| Adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1112] Length = 333 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 53/366 (14%), Positives = 112/366 (30%), Gaps = 59/366 (16%) Query: 98 NNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGL-----------LYKICKNF 140 N E F D + + + T LE+ + + ++ K + Sbjct: 2 ENFEKLFNQFLDCVQTLQNALNVSFTEALVETFDNLEQGKIKVENGAPDEKTVEELSKKY 61 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 I+ D + + + ++ L + ++ A TP + + L+ Sbjct: 62 QAIDY--DHISQKDKAQVFTFLTLKAVNDDGLDANQMPTPPAISTVVAMLMHKLLKDE-- 117 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 + DP GTG L ++ + G + + E + + Sbjct: 118 -----KMEIVDPAVGTGNLLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNL--TDVA 167 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + D + L + +S+ P G + + H Sbjct: 168 AHLNDIDIE------LYCQDALMP--WMCPNADAIVSDLPIGYYPIDENAKNFENHAKKG 219 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 S +L + + L+ G A +V+ +S L +G ++ W Sbjct: 220 H----------SFAHLLLIEQIIKNLKSD----GYAFLVVPNSIL----SGKIGADFMPW 261 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEG 438 L + ++AIV LP D+F + + N +E + +V L +++ S+ Sbjct: 262 LTKKVYLKAIVELPDDMFRNKFNQKSILVFQNHGSEAKPSEVLLTKLDSLKKEQSLIQFN 321 Query: 439 KKRRII 444 K Sbjct: 322 VKLNEW 327 >gi|298531139|ref|ZP_07018540.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1] gi|298509162|gb|EFI33067.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1] Length = 489 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 46/335 (13%), Positives = 101/335 (30%), Gaps = 44/335 (13%) Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 + ++ +S K +F+ + L ++ Sbjct: 112 VWERIIKFLNGYS--LKDLFDASGQDARSDYCRAFNLKGYSIEDLFDASGQD---TRSDY 166 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ +I +G + P D+ + +L D + CG Sbjct: 167 CRAFQKIIAEYGDPARVAS----LPVDLSLFMSRVLNIQDKDRVFFA----------GCG 212 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 G L + + P + Q+ + + + + +KN Sbjct: 213 VGTALLNCVA----------NEPANYVYAQDSIITNALSARVHLALFGCDHS--KVPAKN 260 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + ++ K+F +S P G + + + GRF L + Sbjct: 261 LLLEPDFIEEDKNLKKFDCVISLPQMGSVSSR----IAARLRKDPFGRFPETL--VGRRF 314 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L H+A+ L GR AI+L + L + IR ++ + ++A++ +P Sbjct: 315 TLELAHMAHTLHAMKPSAGRGAILLPARFLSIESSHL----IRAHIVSVNYVDAVITIPR 370 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 + +L K +E V ++ + Sbjct: 371 SYIPSLTFDMAVLVLKMDKQDE---NVLFVDNSSF 402 >gi|148381041|ref|YP_001255582.1| modification methylase family protein [Clostridium botulinum A str. ATCC 3502] gi|148290525|emb|CAL84653.1| putative DNA modification methyltransferase [Clostridium botulinum A str. ATCC 3502] Length = 581 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y I+ Sbjct: 6 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 56 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221 + TP+++ + ++ +D + DP+CG G L Sbjct: 57 -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 107 Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270 ++ + + I + + + + ++I L Sbjct: 108 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 166 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 N ++ L +D+ F + NPP+ +V+KE+ R+G Sbjct: 167 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKERYGYIYKD 219 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 D S F ++ N N + + S + + +R++L EN I I Sbjct: 220 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 271 Query: 391 VALPTDLFFR------TNIATYLWILSNR 413 + F+ I + + Sbjct: 272 LD-----FYGIRPFKAVGIDPAIIFIDRN 295 >gi|148657052|ref|YP_001277257.1| N-6 DNA methylase [Roseiflexus sp. RS-1] gi|148569162|gb|ABQ91307.1| N-6 DNA methylase [Roseiflexus sp. RS-1] Length = 926 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 90/285 (31%), Gaps = 30/285 (10%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 +G E + + TP + + + P R + D TCG G FL + Sbjct: 296 YGKEKRKKLGFYDTPLYLTRRILHNI------PVEFLPPKQRIVVDMTCGWGSFLIAGVE 349 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 ++ G +++ T + + S +I Sbjct: 350 RLSQLSDMRDQSLRDHIIGNDIDIFTAQLAGL------GLLLATSEDSWHIDHEDARQWS 403 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + NPPF + ++ + + G+ R + + +L Sbjct: 404 WIDMHTPGIIVGNPPFRGRRDQPESLEDLMPTKGKRTRV--------EAANAYLDLAIR- 454 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 GG A+++ S L A +G ++RR LLE+ + I LP +F + Sbjct: 455 ---NVRTGGYIAMIMPQSFLV---AEAGP-DVRRNLLESCDVTEIWELPGRMF--PDAKV 505 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 +L RK +R V I ++ S KK I Sbjct: 506 QPIVLFARKESGKRKTVFPIRTRNVQKSTIEAFKKSGIFTASNIA 550 >gi|52550309|gb|AAU84158.1| BpmI endonuclease-methyltransferase fusion protein type IIG [uncultured archaeon GZfos37D1] Length = 951 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 52/368 (14%), Positives = 106/368 (28%), Gaps = 99/368 (26%) Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRR---- 165 IF+ F+ L +L I + + + ++ N+YE + + Sbjct: 286 GIFD-FESDGITPALTIDDKILKTIIQALYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 344 Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 EV + + TP+ +V + A + DP CG+ Sbjct: 345 TAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVKNTVGKLIAGKTPEEIAEIKILDPACGS 404 Query: 217 GGFLTDAMNHVADCG----------------------------SHHKIPPILVPHGQELE 248 G FL A ++ K + G +++ Sbjct: 405 GSFLIGAYTYLLRYHLDWYVSNNPKKHKDVVFQVRENEWYLTTEEKKRILLNNIFGVDID 464 Query: 249 PETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLSKDLFTGKR-- 291 P+ V +L++ LE + +L NI+ G++L F + Sbjct: 465 PQAVEVTKLSLLLKVLEHESRESIDQQMKLGLEGVLPNLGDNIKCGNSLIGPDFYDMQQQ 524 Query: 292 --------------------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 F + NPP+G + + + K++ Sbjct: 525 ETLFDEAEMRRVNVFDWDDNVKGFGEIMKRGGFDCVIGNPPYGAFFSEIEKTYIKQNFEA 584 Query: 320 ELGRFGPGLPKISDGSML-----FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 R+ + + L ++ + +L L G ++S+S F GE Sbjct: 585 YKYRYDSYIYFVEKAINLTKIDGWISFITPELWLKLENGAPLRELISNSAGFEKLRIFGE 644 Query: 375 SEIRRWLL 382 + ++ Sbjct: 645 KVFSKAVV 652 >gi|304312533|ref|YP_003812131.1| Type I restriction-modification system, methyltransferase subunit [gamma proteobacterium HdN1] gi|301798266|emb|CBL46488.1| Type I restriction-modification system, methyltransferase subunit [gamma proteobacterium HdN1] Length = 674 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 84/293 (28%), Gaps = 67/293 (22%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--- 227 + TP +V +A +L P + D + GTG FL H+ Sbjct: 315 DGREGRYPTPLNVAEMAVEML----------DPQPGERIMDCSSGTGTFLAMTAAHIFKK 364 Query: 228 ----------ADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRR 270 + G +++P +L Sbjct: 365 KLAAMGTTPDEATNEQIRQAQNETAAWAASNALGCDIDPFLAVASRMNLLFTTGNPGRVF 424 Query: 271 DLSKNIQQGSTL-----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----- 320 + L ++ L NP F K +++ + G+ Sbjct: 425 RIDARTFPDGDLDGIEAARPAMPLASMDMILLNPWFSTKDVVADESILSRYDLGKVWNKE 484 Query: 321 ---LGR------FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 G G+P +LF+ + ++ G GR I+L L Sbjct: 485 QGGDGYVNSGAINTGGVPP----EVLFIERALDWVKP---GTGRIGILLPDGVL----GN 533 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF------FR-TNIATYLWILSNRKTEE 417 G+ IR W+L + + A V LP + F + T L +L R EE Sbjct: 534 PGDEYIRWWILRHCEVLASVDLPVEPFKVTVKEYGLTPALPSLLVLRRRSQEE 586 >gi|331088991|ref|ZP_08337898.1| hypothetical protein HMPREF1025_01481 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406443|gb|EGG85956.1| hypothetical protein HMPREF1025_01481 [Lachnospiraceae bacterium 3_1_46FAA] Length = 2416 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 103/359 (28%), Gaps = 70/359 (19%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYE 160 F +N AI + + + +A E+ +L K S + +YE Sbjct: 1131 EKFRNNIAAIQTLHELEIENRLATPEEQEILSKYVGWGGLSQAFDENNAAWADEFIELYE 1190 Query: 161 HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 +L + + + F TP V+ +L G + +P+CGTG F Sbjct: 1191 NLSPEEYRAAMESTLTAFYTPPVVIKAMYGVL-----DRLGYEKG---NMLEPSCGTGNF 1242 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 G + +G EL+ T + + I Sbjct: 1243 F----------GLIPEKMAGSKLYGVELDDLTGRIAK------------QLYQKATIAVQ 1280 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 F L N PFG D +++ + F Sbjct: 1281 -GFEDTKLPDDHFDVVLGNVPFGDFRVNDSRYEQQKFLIHDY----------------FF 1323 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 +K++ GG ++ S + E+R+++ + + + LP + F Sbjct: 1324 AKALDKVK----AGGVVMLLTSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFK 1374 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 T + + + IL R +V I + G + +L Sbjct: 1375 ANAGTEVTSDILILKK------RDRVMEIEPEWVHLDTDENGITMNRYFVEHPEMVLGT 1427 >gi|288920049|ref|ZP_06414368.1| conserved hypothetical protein [Frankia sp. EUN1f] gi|288348532|gb|EFC82790.1| conserved hypothetical protein [Frankia sp. EUN1f] Length = 1196 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 93/292 (31%), Gaps = 71/292 (24%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + R + ++Y+ L +V + TP V L L P F Sbjct: 172 HDFTDPAWDTRFLGDLYQDL----SEDVRKKYALLQTPEFVEEFILDLTLTPAIEEFG-- 225 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVP-----HGQELEPETHA 253 + L DPTCG+G FL A + + + + + HG ++ P A Sbjct: 226 -YDVVKLIDPTCGSGHFLLGAFHRLLAEWENNAPDRDVFERVRLALDAIHGVDINPYAVA 284 Query: 254 VCVAGML--------IRRLESDPRRDLSKNIQQGSTLSK--------------------- 284 + ++ IR L + L+ ++ G +L K Sbjct: 285 ITRFRLVVEVLRAAGIRTLAAAVGYQLALHVAVGDSLIKGRQLKIFDDARDNLAEFSYVT 344 Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 DL R+H + NPP+ + + + ++ G + +P Sbjct: 345 EDVREHSDLLKEDRYHVVVGNPPYITVKDASLNKMYRKLYGACGGSYALSVP-------- 396 Query: 338 FLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 F+ + G GR + ++S + E + L+++ L Sbjct: 397 FMQRFFELAKEADKEGRGAGRVGQITANSFMKR--------EFGKKLIQDFL 440 >gi|266621005|ref|ZP_06113940.1| putative type I restriction modification system related protein [Clostridium hathewayi DSM 13479] gi|288867321|gb|EFC99619.1| putative type I restriction modification system related protein [Clostridium hathewayi DSM 13479] Length = 300 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 55/174 (31%), Gaps = 19/174 (10%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++ L + A F TP V L ++ ++ + + Sbjct: 135 NQEQDFLGKMFMRL-----DLGNRSAGQFFTPYHVCELMAEVVATNALEKIEQYGYI--S 187 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIRRL 264 + DP CG G L ++ + H + P Q+++ +C + + L Sbjct: 188 INDPCCGAGATLIAGVHVIRKQLEHCEPPRNYQNHILVVAQDVDEIVGLMCYIQISLLGL 247 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 I+ G++++ + T P + + + + +K Sbjct: 248 AGF--------IKIGNSITDPISTDDSSEKYWYTPMYFSDVWSTRRMLRQINKL 293 >gi|113477986|ref|YP_724047.1| Type I restriction-modification system methyltransferase subunit-like protein [Trichodesmium erythraeum IMS101] gi|110169034|gb|ABG53574.1| Type I restriction-modification system methyltransferase subunit-like [Trichodesmium erythraeum IMS101] Length = 416 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 49/287 (17%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 ++ ++ + TP +++ + L K +P + DP CG+G FL A Sbjct: 13 QYSAQQRKLLGVHYTPDNLIDYIVSHTLFSYLDKNKFTPLDKIKILDPACGSGLFLLKAF 72 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR------RLESDPRRDLSKN--I 276 + + LE + V + + + +++ N I Sbjct: 73 DLLCSLWQKQFGQLKPQDIRHILENNLYGVDIENNAVHEAKKQLKNKANLLGVKEVNIPI 132 Query: 277 QQGSTL-------------SKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAV 312 QG L S F F + NPP+ + ++ Sbjct: 133 FQGDALLHSFTDYQINLLFSNPKIFNWQENFPKVFAEGGFDCIIGNPPYI----RIQNLQ 188 Query: 313 EKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 KE +N + R + D + LF+ L+ G+ + ++S+ L A Sbjct: 189 PKERRNHYIER--YQTARGHFDIAGLFIELGHYLLKPQ----GQLSYIISNKLLTTQGA- 241 Query: 372 SGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEE 417 +R ++ ++ + I+ L T LF + T + IL + Sbjct: 242 ---KALRTYIFKHYSLIEIIDLGDTKLFEAAILPT-ILILEKQIPAS 284 >gi|313667120|gb|ADR73010.1| RM.BsgI [Lysinibacillus sphaericus] Length = 1035 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 61/470 (12%), Positives = 120/470 (25%), Gaps = 134/470 (28%) Query: 38 FTLLRRLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 +R +E ++ + E + ++ E Sbjct: 252 LIFIRIIEDRNIESKEFLKEIVEMHEQDNSISVKNEL----------------------D 289 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN--FSGIELHPDTVPD 152 L +F D F + L +L I N + + + Sbjct: 290 KLCIELNKKFNGL------VFHDHTFVN--EALIDNEILIVIIDNLYYPKSPYNFRLIKP 341 Query: 153 RVMSNIYEHLIRR------------FGSEVSEGAEDFMTPRDVVHLATA-LLLDPDDALF 199 ++ I+E + + + TP +V L Sbjct: 342 EILGRIFEQFLGEKIEIIDGKITLGLKDINKKSGGVYYTPSYIVEKIVENTLSKKLHNDI 401 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC----------------------------- 230 + D CG+G FL + ++ D Sbjct: 402 TIENLEQIKIADIACGSGSFLISSYKYLIDKFQYIYSKCSEADVQTLISNNLVFIDNGKL 461 Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES--------DPRRDLSKNIQQG 279 H K G +++ + V + I LE DL+ NI+ G Sbjct: 462 MLTMEHKKGILQQNIFGVDIDSQAIQVAKLSLYITMLEEGYREGTLRPILPDLNDNIKHG 521 Query: 280 STLSK--------------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 +++ D+ F L NPP+ + ++ + Sbjct: 522 NSIIDNEILFEDDINYDIDATLPFDWEYAFPDIIDNGGFDVILGNPPYIRIQIFEELYGK 581 Query: 314 K-----EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + K +F D ++F+ + L G IV++ Sbjct: 582 DVVNYLKKKYVSAEKFNF------DIYVVFIEKALSLLNDQGILGY---IVMNKFF---- 628 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEE 417 GE ++R + L+ I+ + +F T + IL +E Sbjct: 629 TTQYGE-KLRELITSQKLLYEIIDFGINEIFNNATTYTCILILDKTNPDE 677 >gi|317013141|gb|ADU83749.1| putative adenine specific DNA methyltransferase [Helicobacter pylori Lithuania75] Length = 839 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 55/327 (16%), Positives = 110/327 (33%), Gaps = 34/327 (10%) Query: 42 RRLECAL--EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97 + L+ AL + V + F + SF + +F T YSL + L + Sbjct: 173 KYLKDALIKYQEKVQVSSIFNNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHPFEK 231 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPD 152 NL++ +S +N I E DF + +++ LL +I + + +++ Sbjct: 232 INLDNVRSSIPENFAVIREMADFLKKLDAIKEIQWLLNEILNSINHVDMDSIIKDLNDDK 291 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204 + YE + + ++ E + TP VV L FK++P Sbjct: 292 DPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSTLDN 351 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254 L D GTG FL +A + + +G E +A+ Sbjct: 352 ENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAI 411 Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + + + + + + I +TL + + + P F K+ + ++ Sbjct: 412 AHLNLSQAFKQEFKKPLKENDALQIILTNTLIQP---SEIAAHRGLQPIFEKELKSAQEI 468 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338 + E G ++G + Sbjct: 469 KKDEKILIITGNPPYSGASSNEGLFEW 495 >gi|116629899|ref|YP_815071.1| adenine-specific DNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853656|ref|ZP_04644024.1| adenine-specific DNA methylase [Lactobacillus gasseri 202-4] gi|282851515|ref|ZP_06260880.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1] gi|311110466|ref|ZP_07711863.1| putative modification methylase [Lactobacillus gasseri MV-22] gi|116095481|gb|ABJ60633.1| Adenine-specific DNA methylase [Lactobacillus gasseri ATCC 33323] gi|238833694|gb|EEQ25963.1| adenine-specific DNA methylase [Lactobacillus gasseri 202-4] gi|282557483|gb|EFB63080.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1] gi|311065620|gb|EFQ45960.1| putative modification methylase [Lactobacillus gasseri MV-22] Length = 333 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 54/354 (15%), Positives = 119/354 (33%), Gaps = 49/354 (13%) Query: 98 NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152 +L+ + SFS F+ + + ++E + ++ + + ++ D +P Sbjct: 16 EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L + ++ + TP + + + + +T+ DP Sbjct: 72 ALKVQIFTLLTLKAVTQDASDYNLMPTPSVIATIIALIW-------QRIVSKGKKTVVDP 124 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 GTG L + + ++ +E + + + + Sbjct: 125 AIGTGNLLYSVIRQLIQENHSQNNYKLIGIDNEE--------ALLDLADIGAHLEDLKI- 175 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 ++ L D + ++ +S+ P G + D +A E+ E F Sbjct: 176 --DLYCQDAL--DPWMIEKADIVVSDVPVGY-YPLDNNAERFENHAKEGHSFAHT----- 225 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 LF+ + N L+ A ++ LF G G +E WL + I+AIV Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 LP D+F + + N + +V + +++ S+ K Sbjct: 274 LPDDMFSSQIQQKSILVFQNHGEHAVKREVLVAKLDSLKKPESLVAFNMKLNDW 327 >gi|317011755|gb|ADU85502.1| putative adenine specific DNA methyltransferase protein 1 [Helicobacter pylori SouthAfrica7] Length = 812 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 106/327 (32%), Gaps = 34/327 (10%) Query: 42 RRLECALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97 + L+ AL + V + F + SF + +F T YSL + L + Sbjct: 174 KYLKDALVAYQKNEQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFLAKLNHPFEK 232 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPD 152 NL++ +S N I E DF + +++ LL +I + +++ Sbjct: 233 INLDNVRSSIPKNFAVIREMADFLKNLDGIKEIQWLLDEILSLINHVDMDAILKDLNEDK 292 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204 + YE + + ++ E + TP VV L FK++P Sbjct: 293 DPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDN 352 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254 L D GTG FL +A + + +G E +A+ Sbjct: 353 ENIKLLDFATGTGTFLLEAFRKALETRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAI 412 Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + + + + + I +TL + + Y NP F K+ ++ Sbjct: 413 AHLNLSQAFKEEFKRPLKENDALKIVLTNTLIQP---SEIAAYRGLNPIFEKELLSAQEI 469 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338 + E G + G + Sbjct: 470 KKDEKILIITGNPPYSGASSNKGLFEW 496 >gi|153931712|ref|YP_001385412.1| modification methylase family protein [Clostridium botulinum A str. ATCC 19397] gi|153934578|ref|YP_001388819.1| modification methylase family protein [Clostridium botulinum A str. Hall] gi|152927756|gb|ABS33256.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152930492|gb|ABS35991.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 577 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y I+ Sbjct: 2 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221 + TP+++ + ++ +D + DP+CG G L Sbjct: 53 -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103 Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270 ++ + + I + + + + ++I L Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 N ++ L +D+ F + NPP+ +V+KE+ R+G Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKERYGYIYKD 215 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 D S F ++ N N + + S + + +R++L EN I I Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267 Query: 391 VALPTDLFFR------TNIATYLWILSNR 413 + F+ I + + Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291 >gi|307322457|ref|ZP_07601810.1| N-6 DNA methylase [Sinorhizobium meliloti AK83] gi|306891889|gb|EFN22722.1| N-6 DNA methylase [Sinorhizobium meliloti AK83] Length = 679 Score = 56.1 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 74/242 (30%), Gaps = 53/242 (21%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------------PILVPHGQELEP 249 + DP CG+G FL A + + + G ++ Sbjct: 450 RIVDPACGSGVFLVTAFDFMKAEFTRVNDKIADLRGGARGLFDPDSEILTNNLFGVDVNA 509 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDL------------------FTGK 290 E+ + + ++ D N++ G +L +D F Sbjct: 510 ESVEIAKLSLWVKTARRGKMLDSLDNNLKVGDSLIEDSNFAYLEHGFSWRTAFPQVFRDG 569 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F L NPP+ + + K K RF +SD + L+ L+ Sbjct: 570 GFDIVLGNPPY------VRMELLKAMKPYLEDRFEV----VSDRADLYAYFFERGLK-LL 618 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWI 409 GGR + S++ G +RR+L IE +V +F + + Sbjct: 619 KPGGRLGYISSATFFKTGSGAP----LRRFLRRKATIEHVVDFGDLQIFDGVTTYPAVLV 674 Query: 410 LS 411 + Sbjct: 675 MR 676 >gi|300856561|ref|YP_003781545.1| putative DNA modification methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300436676|gb|ADK16443.1| predicted DNA modification methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 587 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 54/388 (13%), Positives = 112/388 (28%), Gaps = 65/388 (16%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 SF ++ + I ++F +E+ +F + +S E+ + Sbjct: 2 NSFIEDVEQI---YNFIKKNIDVEEK-------MHFIETYKQKSNMKK-EISFSEEYYKQ 50 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + TP ++ L+ + + DP+CG+G + Sbjct: 51 KIM---NGKNGVVYTPPEMAAFMVKNLI----NVNDVIGNPFIKIIDPSCGSGNLICKCF 103 Query: 225 NHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ---GS 280 ++ + ++ +LE ++ + + + D I + Sbjct: 104 LYLNRIFIKNIEVINSKNNLNLKLEDISYHIVRNNLF--GFDIDETAIKVLKIDLFLISN 161 Query: 281 TLSKDLFT---------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 S+ F +++ + NPP+ D K +G Sbjct: 162 QFSEKNFQVKDFLVENIDRKYDVFIGNPPYIGHKSVDSSYSYVLRKI-----YGSIYRDK 216 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 D S F L+ GG+ V S F E +R++L+EN I I+ Sbjct: 217 GDISYCFFQKSLKCLKE----GGKLVFVT--SRYFCESCSGKE--LRKFLIENTSIYKII 268 Query: 392 ALPTDLFFR------TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445 F+ I + L K +++I + E ++ Sbjct: 269 D-----FYGIRPFKRVGIDPMIIFLVRTK--NWNNNIEII------RPNKIEKNEKNKFL 315 Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTF 473 D + + S D F Sbjct: 316 DSLFLDKSEKCKKFSISQKSINNDGWVF 343 >gi|271969041|ref|YP_003343237.1| type II DNA modification enzyme [Streptosporangium roseum DSM 43021] gi|270512216|gb|ACZ90494.1| putative type II DNA modification enzyme [Streptosporangium roseum DSM 43021] Length = 1358 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 43/195 (22%) Query: 144 ELHPDTVPDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLAT 188 ++ + + ++YE L+ + + + TP ++ Sbjct: 423 DVDFQHLGAEELGSVYESLLELVPHPDLAVPTFELKTVAGNDRKTTGSYYTPSSLIESLL 482 Query: 189 ALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVADCG------------- 231 LDP +S T+ DP CG+G FL A +A Sbjct: 483 DTALDPVIDEHAKSGVADDLLKITVCDPACGSGHFLVAAARRIAKRYAAMVTGEAEPVPS 542 Query: 232 ---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGST------ 281 +G +++P + + + LE P L +I+ G++ Sbjct: 543 AVQKAMHKVVGTCIYGVDIQPLAAELAKFSLWMESLEPGKPLAFLDAHIKVGNSLLGTTP 602 Query: 282 -LSKDLFTGKRFHYC 295 L D + F Sbjct: 603 RLLDDGIPDEAFKAI 617 >gi|312872395|ref|ZP_07732464.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] gi|311091977|gb|EFQ50352.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] Length = 333 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164 F++ F++ + ++E KI + + L + + V S+++ L Sbjct: 29 FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TPR + + L K P + + DP G+G L + Sbjct: 87 KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + V G + +P + + +L D R + + Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 TGK+ +S+ P G + + S +LF+ + Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L G A +++ L A + WL + I A+V LP DLF Sbjct: 237 NLNPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288 Query: 405 TYLWILSNRKTEERRGKVQ 423 + +L N + + KV Sbjct: 289 KSILVLQNHGQKMQLRKVL 307 >gi|308229538|gb|ADO24185.1| M.AseI [Aquaspirillum serpens] Length = 552 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 71/229 (31%), Gaps = 38/229 (16%) Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 S N+ N + I+ E + + ++ + Y + I+L + + Sbjct: 56 ISRNSVENFDKKISG--------VEKLNQRANKSKKDNHNHEYLAAEFLRKIDLGIEKID 107 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 M ++YE + + TP +V D K T D Sbjct: 108 S--MGDLYESGL---SDSYRNKEGIYYTPSYIV---------NDLLSLKNQLTGDETFCD 153 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G FL A+ G + + + +L + Sbjct: 154 PCCGSGNFLVRALEI---------GFKPENIFGFDTDHVAVEIAKRRIL------EKTGY 198 Query: 272 LSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 S NI+ L + Y +NPP+GKK E+ + + G Sbjct: 199 KSNNIKCYDFLHLSVSEKAGSYDYIFTNPPWGKKIEQAEKKSISKILKG 247 >gi|289449358|ref|YP_003474758.1| hypothetical protein HMPREF0868_0420 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183905|gb|ADC90330.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 100 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + YE+L+ + S + +F TP DV L T + + K Sbjct: 10 KNHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRIGTVGKTEINK------- 62 Query: 208 TLYDPTC 214 +YDP C Sbjct: 63 -VYDPAC 68 >gi|330904441|gb|EGH35013.1| Type I restriction-modification system methylation subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 61 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 10/69 (14%) Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GG L A + + G + GQE ++ ML+ + + ++ Sbjct: 1 GGMLIAAKEFIDEHGEDGRK---ANLFGQEFNGTVWSIAKMNMLLHGI-------STADL 50 Query: 277 QQGSTLSKD 285 Q TLS Sbjct: 51 QNDDTLSDP 59 >gi|307638029|gb|ADN80479.1| Adenine specific DNA methyltransferase [Helicobacter pylori 908] Length = 833 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 105/330 (31%), Gaps = 37/330 (11%) Query: 42 RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGST 94 + L+ AL + V + F + SF + +F T YSL + L Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHP 235 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDT 149 + +L + +S N I E DF + +++ LL +I + +++ Sbjct: 236 FEKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLN 295 Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP------ 203 + YE + + ++ E + TP VV L + FK++P Sbjct: 296 DDKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSA 355 Query: 204 --GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPET 251 L D GTG FL +A + + +G E Sbjct: 356 LDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAP 415 Query: 252 HAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 +A+ + + + + I +TL + + Y NP F K+ Sbjct: 416 YAIAHLNLSQAFKEEFKKPLKENDVLKIILTNTLIQP---SEIVAYRGLNPIFEKELSNA 472 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + + E+ G + G + Sbjct: 473 QKIKKNENILIITGNPPYSGASENKGLFEW 502 >gi|255325531|ref|ZP_05366633.1| type I restriction enzyme EcoprrI M protein [Corynebacterium tuberculostearicum SK141] gi|255297469|gb|EET76784.1| type I restriction enzyme EcoprrI M protein [Corynebacterium tuberculostearicum SK141] Length = 151 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 21/152 (13%) Query: 1 MTEFTGSAA--SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------- 48 M+ T A SL + A DL G DF +L R L L Sbjct: 1 MSPSTKKAQRDSLHKTLDSIANDLRGKVDGWDFKAYVLGTLFYRYLCDHLVHIINTEQHD 60 Query: 49 ----EPTRSAVREKYLAFGGSNI-DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 E S + ++ F N + + + F S + + + L+ Sbjct: 61 AGDSEFDYSELSDEVAEFERENYTQMVGYYILPSQLF---STFVQGAADNVDLNIELDKA 117 Query: 104 IASFSDNAKAIFEDFDFSSTIARLE-KAGLLY 134 + + ++ DF + + L Sbjct: 118 LRAVEASSADAESADDFKGLFQDFDVNSNKLG 149 >gi|317474809|ref|ZP_07934083.1| hypothetical protein HMPREF1016_01062 [Bacteroides eggerthii 1_2_48FAA] gi|316909490|gb|EFV31170.1| hypothetical protein HMPREF1016_01062 [Bacteroides eggerthii 1_2_48FAA] Length = 784 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 110/330 (33%), Gaps = 42/330 (12%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 AG L++ + + L + P+ ++ Y + + TP + Sbjct: 211 AGRLFEEANYIAQMPLQYELFPNDIIKYDY----------NPKLVGAYFTPSYISRTIVE 260 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 D T++DP CG G FL +A+ + + + G ++ Sbjct: 261 ESFSNFD-----INSTHITIFDPACGAGEFLVEALRQLK----YKGYKGQIEVIGWDIAQ 311 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 A+ +A ++ + + L+ ++ + ++L + + NPP+ Sbjct: 312 T--ALDMANYVLTFEKREWCTQLTVSLYKRNSLQTEWPNN--LDFIFMNPPYI------S 361 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 E R G + + +F A+KL G ++ SS L + Sbjct: 362 WEQMDEETRELACRILGGNKGRPNLAAVFYYLAAHKLSHK----GTLGCLMPSSMLNSIS 417 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 + ++ L L+ I L +F + + I S + Q++ + Sbjct: 418 HMEIRNATKKTL--KPLL--IGRLGNYVFENAFVDACVIIASKSDDSRQT---QILWIQN 470 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + + ++ R ++ + +I+ + Sbjct: 471 VDEATSKALRELRKLHYNT--EIVATSENF 498 >gi|298252319|ref|ZP_06976121.1| protein of unknown function DUF450 [Ktedonobacter racemifer DSM 44963] gi|297545739|gb|EFH79608.1| protein of unknown function DUF450 [Ktedonobacter racemifer DSM 44963] Length = 1019 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 61/477 (12%), Positives = 125/477 (26%), Gaps = 129/477 (27%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 LR E ++ + F++ + YN+ + Sbjct: 236 IFLRICEDRGIEEYERLKFLLKGTSVYKRLCDLFLEAD--ARYNSGLFHFQK------EK 287 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 N + + + N + +D + RL + +P V+ + Sbjct: 288 NWDEAPDTLTQNL--VIDDKPLKDIVKRL-----------YYPESPYEFSALPADVLGKV 334 Query: 159 YEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 YE + + EV + + TP +V L K Sbjct: 335 YEQFLGKVIRLSPSHKVTVEEKLEVRKAGGVYYTPDFIVTYIVHHTLSKLLEGKKPGARG 394 Query: 206 IRT---LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----------------------- 239 + + DP+CG+G FL A ++ D + Sbjct: 395 SASKIKIVDPSCGSGSFLIVAYQYLLDWHRDRYVEDGPEKHRKELFQGPGGQWLLTTQEK 454 Query: 240 -----LVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQG 279 +G +++ + V +L++ LE + + DL NI+ G Sbjct: 455 KRILLNNIYGVDIDSQAVEVTKLSLLLKVLEGESNQSLTSQLSLFQERALPDLDHNIKCG 514 Query: 280 STLSKDLFTGKR----------------------------------FHYCLSNPPF--GK 303 ++L F + F + NPP+ + Sbjct: 515 NSLIDSSFYNEIQQLPLFLDEETQYRINAFDWKSAFPQVFSSDAPGFDAVIGNPPYIRIQ 574 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 ++ + +K G+ + N G +L Sbjct: 575 SLKEWAPLEVEYYKKVYKA--------AGKGNYDLYVVFVEHGLSLLNKHGLLGYILPHK 626 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERR 419 + GE +R + E + +V +F + T L L+ + + Sbjct: 627 FF---NSQYGE-PLRNLIAEGKYLSDVVHFGDKQIFDQATTYTCLLFLNKTGSNQCH 679 >gi|295115656|emb|CBL36503.1| Type I restriction-modification system methyltransferase subunit [butyrate-producing bacterium SM4/1] Length = 300 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 19/176 (10%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + ++ L + A F TP V L ++ ++ + Sbjct: 133 DQNQEQDFLGKMFMRL-----DLGNRSAGQFFTPYHVCELMAEVVATDVLEKIEQYGYI- 186 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIR 262 ++ DP CG G L ++ + H P Q+++ +C + + Sbjct: 187 -SINDPCCGAGATLIAGVHVIRKQLEHCDPPRNYQNHILVVAQDVDEIVGLMCYIQISLL 245 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 L I+ G++++ + T P + + + + +K Sbjct: 246 GLAGF--------IKIGNSITDPMSTDDSSENYWYTPMYFSDVWSTRRMLRQINKL 293 >gi|210613247|ref|ZP_03289630.1| hypothetical protein CLONEX_01837 [Clostridium nexile DSM 1787] gi|210151246|gb|EEA82254.1| hypothetical protein CLONEX_01837 [Clostridium nexile DSM 1787] Length = 2401 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 45/316 (14%), Positives = 88/316 (27%), Gaps = 71/316 (22%) Query: 117 DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTV--PDRVMSNIYEHLI-----R 164 + + + LEK L +I + G P + +N Y L Sbjct: 1108 NMEAIHLLQTLEKEERLATPEEQEILSRYVGWGGIPQAFEESNSSWANEYLELKNTLSPE 1167 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T V+ +L ++ K+ + +P+CG G F+ Sbjct: 1168 EYSAARASTLNAFYTSPTVIRSMYEVL---ENMGLKQGN-----ILEPSCGVGNFMGLIP 1219 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL+P + + + KN + Sbjct: 1220 ESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFEE 1256 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D+ + Sbjct: 1257 TSYPDSFFDCVIGNVPFGAYQVSDRRYDRHHFMIHDY--------------------FIA 1296 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A+V SS + +R+++ + + LP + F T Sbjct: 1297 KSLDLVRPGGVVAVVTSSGTMDKQNPA-----VRQYIANRAELLGAIRLPNNAFQRNANT 1351 Query: 402 NIATYLWILSNRKTEE 417 ++ + + R Sbjct: 1352 SVVSDILFFQKRDRAS 1367 >gi|168181781|ref|ZP_02616445.1| modification methylase family protein [Clostridium botulinum Bf] gi|237796546|ref|YP_002864098.1| modification methylase family protein [Clostridium botulinum Ba4 str. 657] gi|182675026|gb|EDT86987.1| modification methylase family protein [Clostridium botulinum Bf] gi|229262264|gb|ACQ53297.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 577 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y I+ Sbjct: 2 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221 + TP+++ + ++ +D + DP+CG G L Sbjct: 53 -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103 Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270 ++ + + I + + + + ++I L Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 N ++ L +D+ F + NPP+ +V+KE+ R+G Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKERYGYIYKD 215 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 D S F ++ N N + + S + + +R++L EN I I Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267 Query: 391 VALPTDLFFR------TNIATYLWILSNR 413 + F+ I + + Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291 >gi|284053541|ref|ZP_06383751.1| type I restriction-modification system, M subunit, putative [Arthrospira platensis str. Paraca] gi|291569814|dbj|BAI92086.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 1053 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 82/295 (27%), Gaps = 57/295 (19%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S+IYE + + + TP +V +L D + + DP C Sbjct: 339 ISSIYEEFVDKGKKNADK--GVHYTPGHLVDFILDGVLPWDSDEWDLK------ILDPAC 390 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRR 263 G+G FL A + + G ++ P+ V + + Sbjct: 391 GSGIFLVKAFQRLIYRWKKAYPVEEITAPILQQILAGNLFGVDVNPQAVRVASFSLYLTM 450 Query: 264 LESDPRRDLSKNIQQ----------GSTLSKD------LFTGKRFHYCLSNPPFGKKW-- 305 + R + ++ ++ + ++ + N P+G+ Sbjct: 451 CDEIDPRYYWEQVRFPRLRDKRLISADFFQENVEGFRTVHDAGQYDLVIGNAPWGRNTVT 510 Query: 306 -EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 + A + E LPK ++ ++ Sbjct: 511 RFANSWARDNEWPITYGNIGPLFLPKS--AALAKAGQPIAMMQPA------------GGL 556 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSNRKTE 416 +FN S E R L ++ IV L LF T + +S Sbjct: 557 IFN--QISTAQEFRHKLFCEYKVDEIVNLSALRFGLFKDAISPTCIVTMSAELPN 609 >gi|331698571|ref|YP_004334810.1| N-6 DNA methylase [Pseudonocardia dioxanivorans CB1190] gi|326953260|gb|AEA26957.1| N-6 DNA methylase [Pseudonocardia dioxanivorans CB1190] Length = 585 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 82/294 (27%), Gaps = 66/294 (22%) Query: 128 EKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + LL + + + +EL + + +E L R+ S TP DVV Sbjct: 101 DDEPLLPGVTERTDAAFVELAERVADEHGHAGAFELLHARYLETDSRRLR--PTPPDVVA 158 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 L +P L DP CGTGG L A G Sbjct: 159 AMLEL----------AAPEPGELLLDPACGTGGLLVAA--------------RADRLRGV 194 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 +L P+ L + +PP G Sbjct: 195 DLAPDRAL--------IAAARLRLARREAASVCADALLPPD-PADLADVVVCDPPVG--- 242 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + G + G+P S+ + + ++ GGR + + ++ Sbjct: 243 ----------DRRDLDGPWPYGVPPRSEPELAWAQRCVQRVRP----GGRVVVRMPAAAA 288 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 R + LL + + A+V LW+L + +RR Sbjct: 289 SRRRGRRVRAA----LLHDGALRAVV--------GAGHDADLWVLRRPRAGDRR 330 >gi|257080660|ref|ZP_05575021.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis E1Sol] gi|256988690|gb|EEU75992.1| type I restriction-modification system methyltransferase subunit [Enterococcus faecalis E1Sol] Length = 251 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 9/136 (6%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 K F+ + + ++ +Y L ++ A F TP +V L + +D Sbjct: 69 KLFALLVEALEETTTDILGELYMTL-----EIANKDAGQFFTPYNVARLMAEMNFSENDE 123 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 K ++ Y+P G G L N + + G + L+ +++ ++ Sbjct: 124 QLKNGKPVV--FYEPCIGGGVTLIALANVMREKGYN--YQRNLIALCGDIDGNVLSMAYV 179 Query: 258 GMLIRRLESDPRRDLS 273 + +++ R + Sbjct: 180 QCSLLGIDAIFERKNA 195 >gi|330990456|ref|ZP_08314415.1| putative helicase [Gluconacetobacter sp. SXCC-1] gi|329762493|gb|EGG78978.1| putative helicase [Gluconacetobacter sp. SXCC-1] Length = 1347 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 49/376 (13%), Positives = 107/376 (28%), Gaps = 47/376 (12%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLI 163 S + + + D S ++ Y + SGI+ V+ +Y+ Sbjct: 677 NPMSRAMQTVLDALDKHSLHKETDRLEAFYASVRERASGIDTSYGRQK--VIKELYDGFF 734 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTD 222 ++ + + TP +VV + D ++ F ++ G + DP GTG F+T Sbjct: 735 QKAFPRLKDRLGIVYTPIEVVDFIIRSINDVLESEFGQTLGSKGVHIMDPFTGTGTFITR 794 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281 + H E+ + + + + D + + I T Sbjct: 795 LLQSGLITKEQMLHKYRQELHANEIVLLAYYIASINIEATFSDLMDGNYEPFEGICLTDT 854 Query: 282 LS------------KD------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 +D + NPP+ E D + R Sbjct: 855 FRLNEPHDLVSSTLEDNNRRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVAYPTLDAR 914 Query: 324 FGPGLPKIS---DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + S + L+ ++ G V ++ L A +R Sbjct: 915 IAETYAERSTATNKRALYDSYIRAIRWSSDRIGDCGVIGFVTNAGFLDANTANG----LR 970 Query: 379 RWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQ 423 + L E + L + +F + + ++ +++G++ Sbjct: 971 QCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISLMVKNPNAKKQGRIL 1030 Query: 424 LINATDLWTSIRNEGK 439 + D T + + Sbjct: 1031 FYDIGDYLTREQKLKR 1046 >gi|309776103|ref|ZP_07671094.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916054|gb|EFP61803.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 3_1_53] Length = 248 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 11/121 (9%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + + ++ I E L S S + F+TP V + + D Sbjct: 79 DALEANMDQDLLGRICERL-----SMTSFRSGQFLTPYPVSKFMAEINISKLD---TSKQ 130 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 I+T+ DP CGTG L A N + + G + + Q+++ C + ++ Sbjct: 131 KDIQTIADPCCGTGVMLIAAANVIREKGI---PLRNYMMYAQDIDKTMALSCYVQLALQG 187 Query: 264 L 264 + Sbjct: 188 V 188 >gi|170756850|ref|YP_001782725.1| modification methylase family protein [Clostridium botulinum B1 str. Okra] gi|169122062|gb|ACA45898.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 577 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 102/333 (30%), Gaps = 67/333 (20%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y I+ Sbjct: 2 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + TP+++ + ++ +D + DP+CG G L Sbjct: 53 -----GIKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103 Query: 225 NHVADCGSHH------------------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 ++ + + K +G +++ + + + Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILMMDLF-----Y 158 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 N ++ L +D+ F + NPP+ +V+KE+ G++G Sbjct: 159 LTGYYNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKGKYGY 211 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 D S F ++ N N + + S + + +R++L EN Sbjct: 212 VYKDKGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCN 263 Query: 387 IEAIVALPTDLFFR------TNIATYLWILSNR 413 I I+ F+ I + + Sbjct: 264 IYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291 >gi|258652906|ref|YP_003202062.1| type I restriction-modification system methyltransferase subunit-like protein [Nakamurella multipartita DSM 44233] gi|258556131|gb|ACV79073.1| Type I restriction-modification system methyltransferase subunit-like protein [Nakamurella multipartita DSM 44233] Length = 257 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 23/132 (17%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ +Y L + F TP D+ L A+ P +++P Sbjct: 127 DLLGPVYSELRG---DRSRQRTGAFYTPPDLSALLAAM----------TGPRPGDRVFEP 173 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CGTGG + A+ + + +L+P A+ M + Sbjct: 174 ACGTGGMVLAAVRSMRERDLDPNS-CTWTL--NDLDPVAVALASVNMAAHGV-------R 223 Query: 273 SKNIQQGSTLSK 284 + +++ G L++ Sbjct: 224 TVHLRCGDALAQ 235 >gi|293397480|ref|ZP_06641732.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291420059|gb|EFE93336.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 265 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 18/165 (10%) Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 ++ +TI R EKA ++ + +S + + D + +++ L S+ F Sbjct: 95 EYMATIQRYEKADA-QRMAELYSWLVIGLDHDMGDFLGSLFMEL-----ELGSDNIGQFF 148 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + L L+ A + P + TL +PTCG GG + + G + + Sbjct: 149 TPFHLSELMAGLVAGDRLAALESEPYI--TLSEPTCGAGGMVIAFAKIMLARGYNPQTQL 206 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +++P +C + + + + G++L+ Sbjct: 207 R--ADCVDIDPVAARMCYIQLSLLGI--------PARVVIGNSLT 241 >gi|303256816|ref|ZP_07342830.1| helicase domain protein [Burkholderiales bacterium 1_1_47] gi|302860307|gb|EFL83384.1| helicase domain protein [Burkholderiales bacterium 1_1_47] Length = 1579 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 61/451 (13%), Positives = 132/451 (29%), Gaps = 57/451 (12%) Query: 165 RFG-SEVSEGAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +F E+ + TP VV + D + DP GTG FLT Sbjct: 813 KFAFPEMRDKLGIIYTPVPVVDFINHSVADILQKEFGTTIASPNVHILDPFTGTGTFLTR 872 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGS 280 M H E+ P T+ + + + ++ N + Sbjct: 873 LMQSGLIPADKLSEKFKNDIHAHEILPLTYYIASINLEATYYDLVSNQEYEPNPVMIWTD 932 Query: 281 TLSKD------------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 T + + NPP+ E+ D E E + Sbjct: 933 TFADHDAKTLFSTSLAENNARLAKTEELDIRVIVGNPPYSVGQERQADNNENERYDKLDS 992 Query: 323 RFG---PGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 R G ++ + L+ ++ G V ++ + + A + Sbjct: 993 RISKTYAGRTDVTLKNSLYDSYIRAYRWASDRIKDKGVIGFVTNAGWIESNSADG----M 1048 Query: 378 RRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKV 422 R+ + E I L + +F + + +L ++ +GK+ Sbjct: 1049 RKCMSEEFNSIYIYHLKGNQRTSGERSRKEGGKVFGEGSRAPVAIVLLVKNPDDKEKGKI 1108 Query: 423 QLINATDLWTSIRNEGK--KRRIINDDQRRQIL----DIYVSRENGKFSRMLDYRTFGYR 476 D T + K + I++ Q ++I ++++ + F+ + ++ Sbjct: 1109 YFHAVDDYLTREEKLNQLVKAKSISNIQWQRIYPDKHGDWLNQRDDSFAHFIKIDATKFK 1168 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + K F G+ + ++K + + + V Sbjct: 1169 KQKTEV---SVFPPSVNGVKTDRDAWVYNSAVIALSESVRRLIKGYEETVK--LSNDMSV 1223 Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 +E++K + ++ +K A I +K Sbjct: 1224 EEAVKQVKLPWTRLLKTKLEKNALIIFDSKK 1254 >gi|240850389|ref|YP_002971783.1| helicase/methyltransferase [Bartonella grahamii as4aup] gi|240267512|gb|ACS51100.1| helicase/methyltransferase [Bartonella grahamii as4aup] Length = 1654 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 52/394 (13%), Positives = 103/394 (26%), Gaps = 54/394 (13%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + S + I + D ++ ++ Y K + P + ++ +YE Sbjct: 815 NAISQAMERILTELDKTNIEEESKELQEFYNSVKLRASGITSPLARQNLII-TLYESFFA 873 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223 + + ++ TP +VV + D F +S G ++ DP GTG F+T Sbjct: 874 KAFKKTTDKLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 933 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282 + + H E+ + + + K+I T Sbjct: 934 LQSKLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGNYIPFKHIGLADTF 993 Query: 283 SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + NPP+ + D + R Sbjct: 994 RMLEEKNLLQKLFKENSEYLEHQKNLNIEVIFGNPPYSVGQKSANDNAKNTPYPILDDRI 1053 Query: 325 GPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES---- 375 S S++ ++ G V S + S Sbjct: 1054 RETYAAQSKASLMRNLYDSYIRAIRWASDRIADAGVIGFVSGSGYIEKSTMDSLRKSLAK 1113 Query: 376 ------------EIRRWLLENDLIEAIVALPTDLFFR---TNIATYLWILSNRKTEERRG 420 +IR+ +L N ++F T IA L+I + Sbjct: 1114 EFTGIYVLNLRGDIRKNMLSNGA----AQEGENVFGNGSMTGIAITLFI--KNPSVSEEC 1167 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 K+ + + T + + + I Sbjct: 1168 KIYYHDIGNNLTREKKLERLQYF---GSIDGITR 1198 >gi|57118040|gb|AAW34165.1| unknown [Campylobacter jejuni] Length = 556 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158 Y+ S D + + S TI + + +I FSG P ++ Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261 Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ LI + + + F TP + + + L + + +++P+ Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL+ A N+ EL+ + + L Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 N + + K + + NPPFG+K D + P L K S Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLND--------------PTLNKTSV 399 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + F+ + L+ G AA V+SS L S S IR ++ E V L Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449 Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 P + F T + T + K + V+ + D + G + ND Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507 Query: 447 DQRRQ 451 + + Sbjct: 508 FRINE 512 >gi|300777243|ref|ZP_07087101.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] gi|300502753|gb|EFK33893.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] Length = 1809 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 55/341 (16%), Positives = 103/341 (30%), Gaps = 70/341 (20%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L I + ++ L++ + + F TP Sbjct: 49 VLNPIAEEIDINHWRKTEHDLFPITQELHQLLKENSQDEKQYRRYVDSMKSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V+ + + ++ D + I +P+ G G F+ + ++ K Sbjct: 109 PQVIDVISQVMCDNNLH--------IDKFLEPSAGIGSFVQSFAGNETKVTAYEKDVLTG 160 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 Q T + I E + ++ NI G T Sbjct: 161 KILKQLYPESTVRISGFEE-ISEKEQNSYDVVASNIPFGDT-----------------SV 202 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F + + KD+ + + F FL K GG A + Sbjct: 203 FDLSYSRSKDSAKVQAARSIHNYF-------------FL-----KGNDMLRDGGLQAFIT 244 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417 S L + + IRR LLEN+ + +++ LP +LF T + + L IL ++ Sbjct: 245 SQGILNSAKNEP----IRRALLENNDLVSVIRLPNNLFTDYAGTEVGSDLIILQKNTAKQ 300 Query: 418 RRGKVQLINATDLWTSIRNE--GKKRRIINDDQRRQILDIY 456 L DL+ G + D+ +I+ + Sbjct: 301 N-----LTEREDLFCQSTKTGYGTPSNALLDES-EKIVHTH 335 >gi|254297091|ref|ZP_04964544.1| putative type II DNA modification enzyme [Burkholderia pseudomallei 406e] gi|157806923|gb|EDO84093.1| putative type II DNA modification enzyme [Burkholderia pseudomallei 406e] Length = 1631 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 40/170 (23%) Query: 154 VMSNIYEHLIR------------RFGS------EVSEGAEDFMTPRDVVHLATALLLDP- 194 + ++YE L+ RF + + + + TP +V L+P Sbjct: 421 ELGSVYESLLELVPQVAQDGRVFRFANAEQSQGNARKTSGSYYTPDPLVQELLDSALEPV 480 Query: 195 DDALFKESPGM-----IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------- 241 + T+ DP CG+G FL A +A+ + + Sbjct: 481 IHQRIAGATDPQAALLSITICDPACGSGHFLLAAARRLANHLAQSRAQGTPSGSDYRHAL 540 Query: 242 -------PHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283 +G +L P + + + + + P L ++Q G L Sbjct: 541 RDVISHCIYGVDLNPLALELARMSLWLEAMTPEKPLGFLDHHLQCGDALL 590 >gi|326335113|ref|ZP_08201310.1| N-6 DNA methylase superfamily protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692643|gb|EGD34585.1| N-6 DNA methylase superfamily protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 966 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 58/372 (15%), Positives = 106/372 (28%), Gaps = 61/372 (16%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSDNA- 111 E+ + G+ + + + + G + +N L +L S + F+ N Sbjct: 209 KYLEERMDNNGNKLLSDKYFQPYGSTSFN------EVLRQKGKFADLLSDLDKHFNGNVF 262 Query: 112 ------KAIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDR---VMSNIYEH 161 + D S L L F ++S +YE Sbjct: 263 KWKEEEQEELRRLDLSIVAQLLNTDKKDLSSQQLEFGFTNWRYFEFSFIPVELISRLYEE 322 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + E + F TP + L L + + + DP CG+G FL Sbjct: 323 FLG----EQKKEKGLFYTPSHLAKLLVDECLPLKNYEDFDI--ANYKILDPACGSGIFLV 376 Query: 222 DAMNHVADCGSHHKIPPILVPHG---------------QELEPETHAVCVA-----GMLI 261 + Q + + ++ +A + Sbjct: 377 VVFKRLVQIWKLQHNMATPTITDLKKLLKNIYGVDKEQQAIYLTSFSLSLALCNELNPIT 436 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 E + N+ + K+F + NPPF + K + K + Sbjct: 437 ILNELRFDNLIGSNLIHSDFFACKEIENKKFDLVIGNPPFVRGKLDKKQEIWKINDKKIK 496 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 ++ FL N L+ GG I+ SS L+N + + ++ L Sbjct: 497 I-------PQGQIALGFLTQSFNYLK---EGGLLCLIIKSSGLLYNSTSN----DFKKML 542 Query: 382 LENDLIEAIVAL 393 EN I+ L Sbjct: 543 FENYN---IIQL 551 >gi|268324633|emb|CBH38221.1| conserved hypothetical protein [uncultured archaeon] Length = 524 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 45/211 (21%) Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRR---- 165 IF+ FD L +L I ++ + + ++ N+YE + + Sbjct: 286 GIFD-FDSDGITPALTIDDKVLKTIIQDLYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 344 Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 EV + + TP+ +V + A + DP CG+ Sbjct: 345 TAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVENTVGKLIAGKTPEEIAPIKILDPACGS 404 Query: 217 GGFLTDAMNHVADCG----------------------------SHHKIPPILVPHGQELE 248 G FL A ++ + K + G +++ Sbjct: 405 GSFLIGAYTYLLRYHLDWYVSNKPKKYKEAVFQVRENEWYLTTAEKKRILLDNIFGVDID 464 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 P+ V +L++ LE + R + + ++ G Sbjct: 465 PQAVEVTKMSLLLKVLEHESRESIDQQMKLG 495 >gi|317176853|dbj|BAJ54642.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16] Length = 833 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S +N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIVKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLNAYDPKLRESKGVYYTPDSVVKFIIDALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E + Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEVRKISDGGISTKEDKYQNLLKQFYGFEYLIAPYT 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y NP F + ++ Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEITAYRGLNPIFETELLNAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495 >gi|325284295|ref|YP_004256835.1| helicase domain-containing protein [Deinococcus proteolyticus MRP] gi|324316359|gb|ADY27472.1| helicase domain protein [Deinococcus proteolyticus MRP] Length = 1719 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 81/258 (31%), Gaps = 53/258 (20%) Query: 160 EHLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 + ++RR+ G + TP+ + L +L K+ P R + DPTCG+G Sbjct: 103 QDILRRYSGGGGIGESIDAYYTPQALAKLMWQMLEAGMKKPSKKRPYRAR-VLDPTCGSG 161 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L A H G + L+ +AV E R + Sbjct: 162 ALLIGAPEHTELTGVEYDKDAALIAEKILPHAAIYAVP--------FERFTTRSSVPS-- 211 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 F + NPPFG + +E ++ Sbjct: 212 --------------FDMAIMNPPFGNRGNTRDLHEPEESRSERY---------------- 241 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 + + + GG A VL + LF G RR LL L ++A+PT Sbjct: 242 ----IMRQTIRRVSHGGLIAAVLPLN-LFYGEQHQA---FRRELLATTLPLHLIAVPTGA 293 Query: 398 F--FRTNIATYLWILSNR 413 F I T + +L Sbjct: 294 FKASGAGITTVIALLRRH 311 >gi|298737016|ref|YP_003729546.1| hypothetical protein HPB8_1525 [Helicobacter pylori B8] gi|298356210|emb|CBI67082.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 803 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSAV-----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + L+ AL + V + + + E F + T L+ L Sbjct: 178 KYLKNALIKYQEKVQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 235 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S N I E DF + +++ LL +I + + +++ Sbjct: 236 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 295 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 296 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 355 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 356 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGISTKEEKYQNLLKQFYGFEYLIAPYA 415 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + + I +TL + + Y +P F K+ ++ Sbjct: 416 IAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP---SEIVAYRGLSPIFEKELSNAQE 472 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E G ++G + Sbjct: 473 IKKDEKILIITGNPPYSGASSNEGLFEW 500 >gi|15828552|ref|NP_325912.1| restriction-modification enzyme subunit M3 (fragment) [Mycoplasma pulmonis UAB CTIP] gi|14089494|emb|CAC13254.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT) [Mycoplasma pulmonis] Length = 127 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 8/108 (7%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65 + + +WK + + G+ + +I+ L+ L + +++ + Sbjct: 8 TNLNEIKEKLWKACDQMRGNISSEQYMHIIIAIIFLKTLSDKKDYAYQQFSKEFESESDE 67 Query: 66 N--------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105 D F+ G F SE S + + L + I Sbjct: 68 KRLKKWDIIKDDLEFLDKYGIKFLVPSEASWEEITKYIGTSELGTKID 115 >gi|317014747|gb|ADU82183.1| adenine specific DNA methyltransferase [Helicobacter pylori Gambia94/24] Length = 808 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 101/322 (31%), Gaps = 32/322 (9%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTRNNLES 102 + V + F + SF + +F T YSL + L + NL++ Sbjct: 187 DQVSSIKDEQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHPFEKINLDN 245 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIE----LHPDTVPDRVMSN 157 +S N I E DF + +++ LL +I + ++ + + Sbjct: 246 VRSSIPKNFAVIREMADFLKKLDTIQEIQWLLNEILSLINHVDVGSIIKDLNDDKDPYLH 305 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------GMIRTL 209 YE + + ++ E + TP VV L FK++P L Sbjct: 306 FYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKL 365 Query: 210 YDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAVCVAGM 259 D GTG FL +A + + +G E +A+ + Sbjct: 366 LDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNL 425 Query: 260 ---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 + + + + I +TL + + NP F K+ ++ + E+ Sbjct: 426 SQAFKEEFKKPLKDNDALKIILTNTLIQP---SEIIACRGLNPIFEKELSNAQEIKKNEN 482 Query: 317 KNGELGRFGPGLPKISDGSMLF 338 G + G + Sbjct: 483 ILIITGNPPYSGASENKGLFEW 504 >gi|153810239|ref|ZP_01962907.1| hypothetical protein RUMOBE_00620 [Ruminococcus obeum ATCC 29174] gi|149833418|gb|EDM88499.1| hypothetical protein RUMOBE_00620 [Ruminococcus obeum ATCC 29174] Length = 1247 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 88/317 (27%), Gaps = 71/317 (22%) Query: 117 DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTV--PDRVMSNIYEHLI-----R 164 + + + LEK L +I + G P + +N Y L Sbjct: 980 NMEAIHLLQTLEKEERLATPEEQEILSRYVGWGGIPQAFEESNSSWANEYLELKNTLSSE 1039 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T V+ +L ++ K+ + +P+CG G F+ Sbjct: 1040 EYSAARASTLNAFYTSPTVIRSMYEVL---ENMGLKQGN-----ILEPSCGVGNFMGLIP 1091 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL+P + + + KN + Sbjct: 1092 ESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFEE 1128 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D+ + Sbjct: 1129 TSYPDSFFDCVIGNVPFGAYQVSDRRYDRHHFMIHDY--------------------FIA 1168 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A+V SS + +R+++ + + LP + F T Sbjct: 1169 KSLDLVRPGGVVAVVTSSGTMDKQNPA-----VRQYIANRAELLGAIRLPNNAFQRNANT 1223 Query: 402 NIATYLWILSNRKTEER 418 ++ + + R Sbjct: 1224 SVVSDILFFQKRDRASH 1240 >gi|158523151|ref|YP_001531021.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] gi|158511977|gb|ABW68944.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3] Length = 746 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 61/383 (15%), Positives = 113/383 (29%), Gaps = 67/383 (17%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L++ LE + K+ S E Y + L+ L Sbjct: 1 MVLIKYLEDRNVFPSESWFGKFHKGAKSFF--EVLKSGDPEKVY----WLLNFLERKFNG 54 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + K I +F +++ L+ K FS L + ++S+ Sbjct: 55 DVFALENIGQQKLTKGILSNFADLVEARTIKRQRYLW---KQFSFKHLPVE-----IISH 106 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 +Y+ ++ G TP + L L + DP CG+G Sbjct: 107 LYQRFVQ-------GGHGAVYTPPFLASLLLDQALP------YSKLTGTERILDPACGSG 153 Query: 218 GFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 FL A + + K +G EL+P + V + + ++ Sbjct: 154 IFLVGAFKRLVNVWRSRNSWRRPSVTSLKKILKQSIYGIELDPNAIDLSVFSLCLAICDA 213 Query: 267 DPRRDLSKNIQQG-----STLSKDLFT-------------GKRFHYCLSNPPFGKKWEKD 308 + + ++++ + D F F + NPPF K Sbjct: 214 LQPKVIWQDLKFDPLYKSNLFKADFFQVLLNSHQKVPTLFDNDFDVIIGNPPFESKLSDS 273 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 V + + R G + LF N L+ GGR ++ + L+N Sbjct: 274 GKEVNYIAQQNDNSR---GSLPDKQVAYLFFEQAFNVLKP----GGRVCLIQPAQFLYNN 326 Query: 369 RAGSGESEIRRWLLENDLIEAIV 391 R + + I+ I+ Sbjct: 327 NTF----VFRAAIQKKYKIDTIL 345 >gi|67921034|ref|ZP_00514553.1| adenine specific DNA methyltransferase [Crocosphaera watsonii WH 8501] gi|67857151|gb|EAM52391.1| adenine specific DNA methyltransferase [Crocosphaera watsonii WH 8501] Length = 682 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 95/315 (30%), Gaps = 58/315 (18%) Query: 113 AIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 I D+ + L K + I +NF +T + + + YE + + + + Sbjct: 195 DIISKIDWAIDKLVEFLAKVDM-SSILENFGR-----ETRQEDPVVHFYETFLGAYEASL 248 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI---RTLYDPTCGTGGFLTDAMNHV 227 + + TP VV + D D F G+ T+ DP GTG FL + + + Sbjct: 249 RKSRGVYYTPEPVVSFIVQAVNDLLDKEFDLDDGLGSRKVTILDPATGTGTFLYEVIKQI 308 Query: 228 ADCGSHHKIPPIL----------VPHGQELEPETHAVC-----------------VAGML 260 + + +G EL + + + Sbjct: 309 RRNFEKYGVNRWNELLRDKKVLERLYGFELLMTPYTIAHLKLALLLENLGYRFQDKERLN 368 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH------YCLSNPPFGKKWEKDKDAVEK 314 I + + G +S++ L NPP+ E + +E Sbjct: 369 IYLTNALEEGVKKSEVLFGKYISEEANKAAAVKTEIPIYVVLGNPPYSGHSENKNNWIES 428 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNG 368 + G L + + +L K ++ N G A V + L N Sbjct: 429 LVR-DYYKIDGVDLKEKNTK---WLQDDYVKFIRFGQWKIDKNSQGILAFVTNHGYLDNP 484 Query: 369 RAGSGESEIRRWLLE 383 +R+ LL+ Sbjct: 485 TFRG----MRQNLLQ 495 >gi|291557592|emb|CBL34709.1| DNA methylase [Eubacterium siraeum V10Sc8a] Length = 2082 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 66/412 (16%), Positives = 120/412 (29%), Gaps = 79/412 (19%) Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTI 124 I + K S Y S S LG +R F N +AI + + + Sbjct: 992 IREQPSEKEKTLSDYTLSSDDYSDLGGEKSR---------FKHNLEAIKTLKAIESENRN 1042 Query: 125 ARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR-FGSEVSEGAEDFMTPR 181 A ++ +L K S + + + E L + + F T Sbjct: 1043 ATPDEQKILAKYVGWGGLSAAFNADNKSWADEYNEVSELLTSEEYANARESTMTAFYTSP 1102 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +++ K + DP+ GTG F + + Sbjct: 1103 EIIGAVY--------DGLKSIGFDGGNILDPSAGTGNFFGAMPSEMRKNSK--------- 1145 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +G EL+ + + + S NI +G K + + +SN PF Sbjct: 1146 LYGVELDSISARIAK------------QLYQSANITEG-AYEKRVLNDNFYDAAISNVPF 1192 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G+ ++ + + N + K GG A + + Sbjct: 1193 GQ-FKVHDKRYDSLNLNIHD-------------------YFFAKSLDKVRPGGVIAFITT 1232 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418 S L S+ R+++ E + V LP F T + + + L Sbjct: 1233 SGTLDKSN-----SKFRKYMAERAELLGAVRLPNTAFKAVAGTEVTSDIIFLQK------ 1281 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLD 469 R K+Q +N+ + +N I + G ++S D Sbjct: 1282 RDKIQSVNSENCEWLDLGTDDNGIPMNSYFVNHPDMIIGEMKQGIEYSMYGD 1333 >gi|313123381|ref|YP_004033640.1| adenine-specific DNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279944|gb|ADQ60663.1| Adenine-specific DNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 332 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 +Y L+ + ++ A TP L +L D L P + Sbjct: 67 KNWSKAQKEQVYGLLVLKAVNDDGWDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 L DP G+G L +A G + + E + + L++D Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 L+ + +S+ P G ++ R G Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + +LF+ + L A +L + G G ++ WL + Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444 +AIV LP+ LF + I N + +V L +L S+ K Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326 >gi|307067488|ref|YP_003876454.1| type I restriction-modification system methyltransferase subunit [Streptococcus pneumoniae AP200] gi|306409025|gb|ADM84452.1| Type I restriction-modification system methyltransferase subunit [Streptococcus pneumoniae AP200] Length = 237 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 69/245 (28%), Gaps = 59/245 (24%) Query: 5 TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58 TG + + +W+ A L + + + ++ L+ Sbjct: 3 TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44 Query: 59 YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111 G D E F + EY ST N + E Y I F N Sbjct: 45 ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99 Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160 K +D FS I + I F ++ D + +IYE Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L+ + + F TPR ++ + L+ + DP G + Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGFRVII 207 Query: 221 TDAMN 225 N Sbjct: 208 VIEAN 212 >gi|58039940|ref|YP_191904.1| putative type II DNA modification enzyme [Gluconobacter oxydans 621H] gi|58002354|gb|AAW61248.1| Putative type II DNA modification enzyme [Gluconobacter oxydans 621H] Length = 1610 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 41/170 (24%) Query: 154 VMSNIYEHLIR------------RFGSEVS-------EGAEDFMTPRDVVHLATALLLDP 194 + ++YE L+ F SE + + + TP +V L LDP Sbjct: 407 ELGSVYESLLELQPQLGDDGKTLAFASETAEKRGNQRKATGSYYTPDSLVQLLLDTTLDP 466 Query: 195 DDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------- 237 + + T+ DP CG+G FL A +A + H+ Sbjct: 467 VLDRAETQTANPAGALLNLTVIDPACGSGHFLLAAARRIATRVARHRADGLPSMADYRHA 526 Query: 238 ----PILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282 +G + P + + I LE P I+ G +L Sbjct: 527 LREVASRCLYGVDRNPMAVELSKVALWIEALEPGRPLAFFDAQIRCGDSL 576 >gi|315123583|ref|YP_004065588.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018838|gb|ADT66930.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 1935 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158 Y+ S D + + S TI + + +I FSG P ++ Sbjct: 201 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 260 Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ LI + + + F TP + + + L + G + +++P+ Sbjct: 261 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 316 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL+ A N+ EL+ + + L Sbjct: 317 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 352 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 N + + K + + NPPFG+K D + L K S Sbjct: 353 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT--------------LNKTSV 398 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + F+ + L+ G AA V+SS L S S IR ++ E V L Sbjct: 399 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRL 448 Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 P + F T + T + K + V+ + D + G + ND Sbjct: 449 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 506 Query: 447 DQRRQ 451 + + Sbjct: 507 FRINE 511 >gi|93007190|ref|YP_581627.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5] gi|92394868|gb|ABE76143.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5] Length = 600 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 77/207 (37%), Gaps = 32/207 (15%) Query: 263 RLESDPRRDLSKN---IQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + +D +SKN + + L K + K F + +S P G K Sbjct: 187 GMIADALSLMSKNSFEVSYSNALDKPAYITSKNELKTFDHGVSFSPMGVMVPKHISDNID 246 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + RF K+ + L L G + + L++ E Sbjct: 247 SYD-----RFIIPTKKVESAN---------ILHLIKQCRGTVVVSVPEGFLYSTM----E 288 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 ++R++L++ +++A+++LP+ ++ T + T L ++ V+ I+ T Sbjct: 289 KDLRQYLVDQGMLKAVISLPSGIWTGTAVKTSLLLIE---PNGNNQSVRFIDVTGEEFIE 345 Query: 435 RNEGKKRRIINDDQRRQILDIYVSREN 461 + +R+++ IL+ S + Sbjct: 346 KTT---KRLLSLSNIDIILEYLASDKE 369 >gi|228476638|ref|ZP_04061318.1| type I restriction enzyme EcoprrI M protein [Streptococcus salivarius SK126] gi|228251736|gb|EEK10810.1| type I restriction enzyme EcoprrI M protein [Streptococcus salivarius SK126] Length = 80 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 13/89 (14%) Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + + D NI G+TL F + F +SNPP+ KW D Sbjct: 1 MHNINYDKF-----NIVLGNTLLNPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LI 50 Query: 320 ELGRFGPG--LPKISDGSMLFLMHLANKL 346 RF P L S F++H N L Sbjct: 51 NDERFAPAGVLAPKSKADFAFVLHALNYL 79 >gi|145139|gb|AAA23389.1| restriction endonuclease [Escherichia coli] Length = 997 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 59/438 (13%), Positives = 114/438 (26%), Gaps = 87/438 (19%) Query: 33 KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 I LR E + Y + + YN+ +SL + Sbjct: 232 NYINSIVFLRVCEDRDLEEYETL---YHFAQDKDFQSLVKKLKSSDKKYNSGLFSLEYID 288 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 L S S ++ + I + L I + F ++ D + + Sbjct: 289 E------LLSNANSCIEHHRTIILPHKAHTLSLFSLLIFL-GNIYEIFLSEKVRIDELGN 341 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + EH+ + TP +V + + + D Sbjct: 342 VKIQPKEEHI----------DRDVVTTPTHIVKEIIRNTVVEYCKGKSDIEILNSKFADI 391 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRL 264 CG+G F+ A + D + I + + E + +C I + Sbjct: 392 ACGSGAFIIVAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFEVKREILCK---CIYGI 448 Query: 265 ESDPRRDLS-----------------------------KNIQQGSTLSKDL--------- 286 + D + NI G++L Sbjct: 449 DKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSLIDSGDKVKQEDIF 508 Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 T +F + NPP+ + + R K D LF+ Sbjct: 509 SINPFDLTNYQFDVIVGNPPY---MATEHMNQLTPKELDIYKRKYKSAYKQFDKYFLFIE 565 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFF 399 L+ G +L ++R++L EN + +++ + +F Sbjct: 566 RSIQILKEY----GYLGYILP----SRFIKVDAGKKLRKFLSENKYLSKLISFGSHQVFK 617 Query: 400 RTNIATYLWILSNRKTEE 417 T L L+ + Sbjct: 618 NKTTYTCLLFLNKENHDN 635 >gi|308229515|gb|ADO24169.1| M.AflII [Anabaena flos-aquae CCAP 1403/13F] Length = 521 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 86/288 (29%), Gaps = 55/288 (19%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F + + + +LL + +P G G L A+ Sbjct: 9 DKYQTYFTSDQSLSSYMVSLLRLETNDKL----------LEPCAGEGHLLAAAL------ 52 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288 I + EL PE + L+ + + I++ T+ Sbjct: 53 ----GINKDISSVAYELHPEHA---------KSLKLKFSKFKNVEIRERDTIFCPDLDLC 99 Query: 289 ---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 G +F L NPP+G E ++ K G + + FL+ Sbjct: 100 ESFGHKFTKILGNPPYGGWQEYERRTELKRKYPGFYIKETYTI---------FLLRCLKL 150 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L GR ++ + L+ IRR+LLE IE++ + LF + Sbjct: 151 LAEK----GRLVFIIPDTFLY----LHSHITIRRYLLEKFTIESVDVFRSSLFPGISFGY 202 Query: 406 ---YLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQR 449 + + K + V+ I + +T N I Sbjct: 203 AGLCIISIRAEKPKSNHSFSVRYIKSLGDFTESPNIKSHGNNIIQKNI 250 >gi|260654987|ref|ZP_05860475.1| putative type I restriction-modification system, M subunit [Jonquetella anthropi E3_33 E1] gi|260630302|gb|EEX48496.1| putative type I restriction-modification system, M subunit [Jonquetella anthropi E3_33 E1] Length = 514 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 85/294 (28%), Gaps = 64/294 (21%) Query: 44 LECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGST-----NT 96 L+ + + + + + ++ E F + + L N Sbjct: 179 LDDLVA--KDKLVTERKSLKDLILEMEDEVLANAGVDVFEEVFKLIFTKLFDEMRSGRNK 236 Query: 97 RNNLE--SYIASFSDNAKAIFEDFDFSSTIARLE-----KAGLL---YKICKNFSGIELH 146 + NLE +Y + + K I F F + + A LL + S ++ Sbjct: 237 KRNLEFRNYGETDEELKKKI--QFLFDQAKDQWDGVFTGDAKLLLSPSHLAICISSLQDV 294 Query: 147 PDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 + V+ + +E+L+ + F TPR V+ + +L +P Sbjct: 295 KLFNSNLDVVDDAFEYLMSK---TSKGEKGQFFTPRYVIEMCVKML----------NPRA 341 Query: 206 IRTLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQEL 247 T+ D G+ GF M HV + + Sbjct: 342 DETMIDTAAGSCGFPVHTMFHVWRSIMKEKESVQSNLFTTEEKPDECTYYVNNNVFAIDF 401 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHYCLS 297 + +T V LI D N+ +TL D + Y + Sbjct: 402 DEKTVRVARTLNLIAG-------DGQTNVLHLNTLDYEHWDDTAKDNDWRYNVG 448 >gi|323466883|gb|ADX70570.1| Possible site-specific DNA-methyltransferase (Adenine-specific) [Lactobacillus helveticus H10] Length = 350 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 40/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D + + + ++ L + ++ TP + + L+ K Sbjct: 84 DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 136 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DPT GTG L ++ + G + + E + + + D Sbjct: 137 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 191 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + SNP E+ R G Sbjct: 192 IELYCQ---------------DALMPWMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 236 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S +L + + L+ G A +V+ S L +G ++ WL + + Sbjct: 237 H---SFAHLLLIEQIIKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 285 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 +AIV LP D+F + N + + +V L +++ ++ K Sbjct: 286 KAIVELPDDMFKNKFNQKSILFFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 344 >gi|331005595|ref|ZP_08328966.1| hypothetical protein IMCC1989_2177 [gamma proteobacterium IMCC1989] gi|330420610|gb|EGG94905.1| hypothetical protein IMCC1989_2177 [gamma proteobacterium IMCC1989] Length = 270 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 7/101 (6%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L ++C+ S + + + P ++ +Y L S+ + TP + L +L Sbjct: 63 LQRLCEMLSIVVMLLEPEPTDILGQLYMEL-----ELSSKENGQYFTPPYISGLMAEILH 117 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 + P TL++P CG GG + + V + Sbjct: 118 GESLDQKLQQP--FVTLHEPACGAGGMVMSFVKVVIQKKHN 156 >gi|166365645|ref|YP_001657918.1| adenine specific DNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166088018|dbj|BAG02726.1| adenine specific DNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 1154 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 69/236 (29%), Gaps = 19/236 (8%) Query: 114 IFEDFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 +FE S + L +L E + + YE ++ F ++ Sbjct: 286 LFEQIAAPSKLKSLGLVEVLNWTGAALNRVRREEFFRQFDEGQAVQYFYEPFLQAFDPDL 345 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHV 227 + + TP ++V A + G + DP CGTG +L + + ++ Sbjct: 346 RKELGVWYTPPEIVRYMVARVDRVLREELNIEDGLANPDVYILDPCCGTGAYLVEVLRYI 405 Query: 228 ADCGSHH----------KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSK- 274 D + K I G E+ V G+ ++ L D + Sbjct: 406 TDTLQENGAGALAMALVKKAAIERIFGFEILTAPFVVAHLQLGLFLQSLGVPLIEDSERV 465 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I + L+ + + + E K G+ G P Sbjct: 466 GIYLTNALTGWQPPDEESKQKIQQLQLSFPELNKEREAADEVKRGKPILVILGNPP 521 >gi|16082323|ref|NP_394792.1| type IV site-specific deoxyribonuclease Eco57I related protein [Thermoplasma acidophilum DSM 1728] gi|10640679|emb|CAC12457.1| type IV site-specific deoxyribonuclease Eco57I related protein [Thermoplasma acidophilum] Length = 496 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 27/185 (14%) Query: 129 KAGLLYKICKNFS-----GIELHPDTVPDRVMSNIYEHLIRRF----GSEVSEGAEDFMT 179 L ++ + + + V+ NI + +R + + T Sbjct: 294 DNEALQEVIEGLNHSKDDSYRYDFSVIESDVLGNILKSTPKRAKLEESKTHRKEQGIYYT 353 Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P +V + + DP CG+G FL A + + + Sbjct: 354 PSYIVDYIVKNTVGEYIKTHTPEEIKKVRILDPACGSGSFLIRAYKELENYWKQNSDFAQ 413 Query: 240 LVP-----------------HGQELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGST 281 L +G +L+P+ + +L++ LE L NI+ G++ Sbjct: 414 LTLDSEEFYSKKVEILRNNIYGVDLDPKAVEIAQLNLLLQILEKKQRLPLLQNNIKVGNS 473 Query: 282 LSKDL 286 L D Sbjct: 474 LIDDP 478 >gi|260102551|ref|ZP_05752788.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083645|gb|EEW67765.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 340 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 40/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D + + + ++ L + ++ TP + + L+ K Sbjct: 74 DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 126 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DPT GTG L ++ + G + + E + + + D Sbjct: 127 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 181 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + L + SNP E+ R G Sbjct: 182 IE------LYCQDALIP---------WMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 226 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S +L + + L+ G A +V+ S L +G ++ WL + + Sbjct: 227 H---SFAHLLLIEQIIKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 275 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 +AIV LP D+F + + N + + +V L +++ ++ K Sbjct: 276 KAIVELPDDMFKNKFNQKSILVFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 334 >gi|126179107|ref|YP_001047072.1| hypothetical protein Memar_1159 [Methanoculleus marisnigri JR1] gi|125861901|gb|ABN57090.1| protein of unknown function DUF450 [Methanoculleus marisnigri JR1] Length = 1036 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 15/118 (12%) Query: 129 KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRF-------------GSEVSEG 173 +L +I + + P ++ +YE + + EV + Sbjct: 306 DDKVLKQIISHLYYPDSPYEFSVFPADILGQVYEQFLGKVIRLTAGHQAKVEEKPEVKKA 365 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 F TP +V + + DP CG+G FL A ++ D Sbjct: 366 GGVFYTPTYIVEYIVKQTVGNLVEGKDPKAVAGLHVLDPACGSGSFLLGAYQYLLDWH 423 >gi|328461769|gb|EGF34005.1| putative modification methylase [Lactobacillus helveticus MTCC 5463] Length = 333 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 40/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D + + + ++ L + ++ TP + + L+ K Sbjct: 67 DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DPT GTG L ++ + G + + E + + + D Sbjct: 120 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 174 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + L + SNP E+ R G Sbjct: 175 IE------LYCQDALIP---------WMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 219 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S +L + + L+ G A +V+ S L +G ++ WL + + Sbjct: 220 H---SFAHLLLIEQIIKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 268 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 +AIV LP D+F + + N + + +V L +++ ++ K Sbjct: 269 KAIVELPDDMFKNKFNQKSILVFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 327 >gi|161507252|ref|YP_001577206.1| putative modification methylase [Lactobacillus helveticus DPC 4571] gi|160348241|gb|ABX26915.1| putative modification methylase [Lactobacillus helveticus DPC 4571] Length = 333 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 89/299 (29%), Gaps = 40/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D + + + ++ L + ++ TP + + L+ K Sbjct: 67 DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DPT GTG L ++ + G + + E + + + D Sbjct: 120 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 174 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + SNP E+ R G Sbjct: 175 IELYCQ---------------DALMPWMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 219 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S +L + + L+ G A +V+ S L +G ++ WL + + Sbjct: 220 H---SFAHLLLIEQIVKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 268 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444 +AIV LP D+F + + N + + +V L +++ ++ K Sbjct: 269 KAIVELPDDMFKNKFNQKSILVFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 327 >gi|270265410|ref|ZP_06193670.1| hypothetical protein SOD_n00300 [Serratia odorifera 4Rx13] gi|270040665|gb|EFA13769.1| hypothetical protein SOD_n00300 [Serratia odorifera 4Rx13] Length = 279 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 29/234 (12%) Query: 51 TRSAV-REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 + V +++ + +++F A Y L + N Sbjct: 49 KKEQVNKQENRSTNPRKEFMDTFRVTARYHHRYEVFSDFVKLSACALENAFMKS------ 102 Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 E ++ +TI R EKA ++ + + + + + + ++Y L Sbjct: 103 ---EAIEA-EYMATINRYEKADA-ERMAQLLAWLVMGLEQGMCDFLGSLYMEL-----EL 152 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 S F TP + L L++ A + S + TL +PTCG GG + + + Sbjct: 153 GSANIGQFFTPFTMSELMAQLVIGDRLAELETSSYI--TLSEPTCGGGGMVIAFAKQMLE 210 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 G + + +++P +C + + + + G++LS Sbjct: 211 RGYNPQTQLR--ADCVDIDPVAARMCYIQLSLLGI--------PARVAIGNSLS 254 >gi|322378562|ref|ZP_08053005.1| type II restriction modification enzyme methyltransferase [Helicobacter suis HS1] gi|322380000|ref|ZP_08054267.1| type IIS restriction enzyme [Helicobacter suis HS5] gi|321147573|gb|EFX42206.1| type IIS restriction enzyme [Helicobacter suis HS5] gi|321149011|gb|EFX43468.1| type II restriction modification enzyme methyltransferase [Helicobacter suis HS1] Length = 677 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 64/454 (14%), Positives = 140/454 (30%), Gaps = 85/454 (18%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLES---------FVKVAGYSFYNTSEYSLSTLG 92 + +E T + + + ++L+ + A Y TS L L Sbjct: 186 KAIEDLESQTETQLNKLNQFLHDEILNLDPNDRVALLVGMIMAASGVAYKTSPLKLEDLK 245 Query: 93 STNTRN---------NLESYIASFS----------DNAKAIFEDFDFSSTIARLEKAGL- 132 + ++ +++++ + + + +F + + Sbjct: 246 NEQDKDSHDGHEFLKKIKAFLNAKNLPPEKISIVVHELQKVFIHSKLW-QTNTYTRKNIA 304 Query: 133 ---LYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L I F L + ++ L + +E + +TPR VV L Sbjct: 305 ISPLKTIYGRFLEGVFPLVKKLSQADIAGKLFNVLTKWLEVPDNEKNDVVLTPRIVVDLM 364 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILV 241 L D+ ++D G+G FL +MN + + I Sbjct: 365 VNLAEVNQDSF----------VWDYATGSGAFLVSSMNKMIQDCTEKILNQEEREKKIAH 414 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +L + L+ L D S N+ +L D G ++ Sbjct: 415 IRAYQLLGIEKRTDIY--LLGVLNMLLLGDGSANLLHKDSLV-DFKEGVKYE-------- 463 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVL 360 + + K F P + G +F+ ++ GRA +++ Sbjct: 464 ---------QGDYKGKLFNANVFLLNPPYSAKGKGFVFVDRALERMTS-----GRAVVII 509 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR 419 + + +L+ + + A + +P DLF +++ T +++ K + Sbjct: 510 QENAGSGNGLPYT-----KDILKKNTLLASIKMPLDLFVGKSSVQTAIYVFEVGKPHNKE 564 Query: 420 GKVQLINATD--LWTSIRNEGKKRRIINDDQRRQ 451 V+ IN ++ + R + K + D R + Sbjct: 565 HMVKFINFSNDGYMRAARKKAKASVNLRDVDRAK 598 >gi|169834613|ref|YP_001693403.1| hypothetical protein CLD_A0164 [Clostridium botulinum B1 str. Okra] gi|169123161|gb|ACA46996.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 972 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 51/311 (16%), Positives = 95/311 (30%), Gaps = 46/311 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 IL +R L G E+ +K+A S +S Sbjct: 182 ILRLIFIRFLIDRGID-----IGYDGFNGDIKESQEALLKLANNKRKLYSFFSYLKNKFN 236 Query: 95 NTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 LE Y + +D + + F + +E L + +F+ I + Sbjct: 237 GNLFELEDEVYDEALNDEVFELLKCFLSGNQ--EMESGQLSFLPLYDFNIIPIEL----- 289 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +SNIYE L+ + + F TP + + + + DP Sbjct: 290 --ISNIYEVLLGEKAQDDDK---AFYTPEYLADYIVK-----ESLGTFLTKDSQCKVLDP 339 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCVAGMLIR 262 +CG+G FL +++ + +G + PE V + + + Sbjct: 340 SCGSGIFLVESLQLIISKNVDDNGYIKDNDKLCQLIESNIYGVDSNPEAIDVTIFSLYLT 399 Query: 263 RLES----DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKD 310 + N++ + D F + +F + L NPP+G E Sbjct: 400 LFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNPPWGSVKEGLHS 459 Query: 311 AVEKEHKNGEL 321 E+K + Sbjct: 460 QYCDENKIPQY 470 >gi|38505536|ref|NP_942157.1| hypothetical protein ssl5001 [Synechocystis sp. PCC 6803] gi|38423560|dbj|BAD01771.1| unknown protein [Synechocystis sp. PCC 6803] Length = 59 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 21/35 (60%) Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA 614 E+ D NL + EN+ I YF+REV PHV +A Sbjct: 25 EYKTDANLRDTENIFLNNEICRYFLREVKPHVNNA 59 >gi|317010034|gb|ADU80614.1| hypothetical protein HPIN_07115 [Helicobacter pylori India7] Length = 797 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 105/328 (32%), Gaps = 36/328 (10%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + A+ + E F + T L+ L Sbjct: 173 RYLKEALIQNQEKTQVSSIFNNFKAYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIEL----HPDTVP 151 + NL++ + N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSFIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMVSILKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203 + YE + + ++ E + TP VV L FK++P Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALD 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253 L D GTG FL +A + + +G E +A Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 410 Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 + + + + + D + I +TL + + Y P F + + ++ Sbjct: 411 IAHLNLSQAFKQEFKKPLKEDDALKIILTNTLIQP---SEIAAYRGLQPIFETELKSAQE 467 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338 + E+ G ++G + Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495 >gi|222778489|ref|YP_002576126.1| DNA methylase/helicase [Campylobacter lari RM2100] gi|222539774|gb|ACM64874.1| DNA methylase/helicase [Campylobacter lari RM2100] Length = 1934 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 78/472 (16%), Positives = 142/472 (30%), Gaps = 84/472 (17%) Query: 65 SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124 N GY Y S + + ++ E Y+ S D + + S TI Sbjct: 162 ENNQRSVLELTTGYDGY--EGRSFKSGQKLDFASDDEVYLGSLKDRFQKNLQAIKLSKTI 219 Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLI-----RRFGSEVSEGAE 175 + + +I FSG P ++ ++ LI + + + Sbjct: 220 EQENRYATKQEQEILNKFSGWGGIPQAFDFQNKEWEKEFKELINTLDYAEYEKAKTSTLD 279 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP + + + L + + +++P+ G G FL+ A N+ Sbjct: 280 AFYTP----KIIIDTIYQGLNQLGFNNDNHTKEIFEPSAGIGSFLSYAKNY--------- 326 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKR 291 EL+ + + N+ T+ F K Sbjct: 327 -SDKYRFTCIELDTMSSNILK------------------NLYPNQTIYNKAFQHHLFDKP 367 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + + NPPFG+K D + P L K S + F+ + L+ Sbjct: 368 YDAFIGNPPFGQKKIIDPNN--------------PTLNKTSVHNY-FIGNAIKNLKED-- 410 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408 G AA V+SS L S S IR ++ E V LP + F T + T + Sbjct: 411 --GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRLPNNAFKKRANTEVTTDII 463 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 K + + + R ++R D++ ++ + Sbjct: 464 FFKKGKDLNINNSWL--ESVEYYD--------NRFAEAEKRGMHTDVFNDFRINEYFKKN 513 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 G IK + + LD + + + L + +K Sbjct: 514 PQNILGKMDIKSSQYGKDLVCLDDGRNLKEALENFVKSLPKDIYKYQETKIK 565 >gi|210616747|ref|ZP_03291211.1| hypothetical protein CLONEX_03432 [Clostridium nexile DSM 1787] gi|210149669|gb|EEA80678.1| hypothetical protein CLONEX_03432 [Clostridium nexile DSM 1787] Length = 269 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 25/160 (15%) Query: 138 KNFSGI-----ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + FS + ++ IY L F TP + L + + Sbjct: 70 EKFSKMFAMVVSGMERNPEKDLLGEIYMQL-----RISDNQKGQFFTPYPISKLMAEITI 124 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 + + + L +P CG+G + A N + + G Q+++ Sbjct: 125 EEKEDI-----SAPFLLNEPACGSGVNVIAAANTMKERG--IDYQRNAYFIAQDIDSLVA 177 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 +C M + + G TL ++ +++ Sbjct: 178 KMCYIQMSLMGCPGV--------VIIGDTLVGNIEDMEKW 209 >gi|158421587|ref|YP_001527814.1| DEAD-like helicase [Deinococcus geothermalis DSM 11300] gi|158342830|gb|ABW35116.1| DEAD-like helicase [Deinococcus geothermalis DSM 11300] Length = 1328 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 62/260 (23%) Query: 161 HLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 L+ R+ GA ++ TP ++ ++ G +P+ G G Sbjct: 304 QLLARYSGNGGIGASLNEYYTPPELGEAMWQVM-----RKLGSGTGAG---LEPSSGPGV 355 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 A L P + + A + D + Q Sbjct: 356 LAQFAGEDARMDLVE-------------LSPISAGIANA---LFGHRHDVHSMSFEAFHQ 399 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG--ELGRFGPGLPKISDGSM 336 +R+ + NPPFG +D++A + E R+ Sbjct: 400 -------RHPEQRYDFLTGNPPFG---PRDENAYLDDGYQDVQECSRY------------ 437 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 F + + L+ GG A +VL + ++E R +L + AI LPTD Sbjct: 438 -FTLRALDHLKE----GGVATLVLPAGL----ARNQNDAEWRARVLARAEVVAIHGLPTD 488 Query: 397 LFFRTNIATY---LWILSNR 413 F R T +W+L R Sbjct: 489 TFSRAGTDTATTDVWVLRAR 508 >gi|315059225|gb|ADT73553.1| cpp14 [Campylobacter jejuni subsp. jejuni S3] Length = 1932 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158 Y+ S D + + S TI + + +I FSG P ++ Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261 Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ LI + + + F TP + + + L + G + +++P+ Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 317 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL+ A N+ EL+ + + L Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 N + + K + + NPPFG+K D + L K S Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT--------------LNKTSV 399 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + F+ + L+ G AA V+SS L S S IR ++ E V L Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRL 449 Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 P + F T + T + K + V+ + D + G + ND Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507 Query: 447 DQRRQ 451 + + Sbjct: 508 FRINE 512 >gi|57505091|ref|ZP_00371038.1| helicase, Snf2 family [Campylobacter coli RM2228] gi|57019134|gb|EAL55847.1| helicase, Snf2 family [Campylobacter coli RM2228] Length = 1854 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158 Y+ S D + + S TI + + +I FSG P ++ Sbjct: 124 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 183 Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ LI + + + F TP + + + L + G + +++P+ Sbjct: 184 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 239 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL+ A N+ EL+ + + L Sbjct: 240 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 275 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 N + + K + + NPPFG+K D + L K S Sbjct: 276 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT--------------LNKTSV 321 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + F+ + L+ G AA V+SS L S S IR ++ E V L Sbjct: 322 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRL 371 Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 P + F T + T + K + V+ + D + G + ND Sbjct: 372 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 429 Query: 447 DQRRQ 451 + + Sbjct: 430 FRINE 434 >gi|308273431|emb|CBX30033.1| hypothetical protein N47_D28420 [uncultured Desulfobacterium sp.] Length = 1032 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 84/288 (29%), Gaps = 54/288 (18%) Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 + +P +S +Y+ + G F TP +V+ D+ Sbjct: 277 HLDFKAYDFQHIPIETLSMVYQQFLH--TEGKGRGQGAFYTPIHLVNFIL------DELD 328 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQEL 247 K T+ DP CG+G FL + + + G E+ Sbjct: 329 TKRPLQKGMTVLDPACGSGAFLVQCFRRLIEREAIKSPNKKLSPFTLRELLTDHIWGVEV 388 Query: 248 EPETHAVCVAGMLIRRLESDPRRD--------------LSKNIQQGSTLSKDLFTG---- 289 + + V +++ L+ D KNI + D + Sbjct: 389 DEDACGVTELSLILTLLDYVDPPDLEKPEYKKFQLPPLRDKNIFYCNQGFFDPESKWQSA 448 Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEK---EHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K + + + NPP+ K + D +K E RF +S + A Sbjct: 449 KHRKGYDWIVGNPPWKKLNSEKMDNGDKYAIEWIRKNTQRF-----PVSSNQIA--EAFA 501 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + + G ++L + LF + R + +V Sbjct: 502 WEASQYLSAYGLFGMLLPAGTLFKTNG----KKFREKFFSTLRVWCVV 545 >gi|225407951|ref|ZP_03761140.1| hypothetical protein CLOSTASPAR_05172 [Clostridium asparagiforme DSM 15981] gi|225042522|gb|EEG52768.1| hypothetical protein CLOSTASPAR_05172 [Clostridium asparagiforme DSM 15981] Length = 2122 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 69/260 (26%), Gaps = 55/260 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S + T V ++ + +P+CG G F Sbjct: 846 EEYASARASTLNAHYTSPTVARAIYEVVG--------NLGFHSGNILEPSCGVGNFFGLL 897 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +A +G EL+ + + + +I Sbjct: 898 PEGMAASK----------LYGVELDSISGRIA------------GQLYPKASIAV-RGFE 934 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K F F + N PFG D + + FL Sbjct: 935 KTNFPDGFFDVAIGNVPFGGYKVVDSRYDKHNFFIHDY----------------FLAKAI 978 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +K+ GG A + S+ G + R +L E + + LP + F Sbjct: 979 DKVRP----GGVLAFITSNGV-SGGTMDKKDRRAREYLAERCDLLGAIRLPNNAFAANAG 1033 Query: 401 TNIATYLWILSNRKTEERRG 420 T++ T + L + G Sbjct: 1034 TDMTTDILFLQKLDAPRQLG 1053 >gi|227877256|ref|ZP_03995329.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus crispatus JV-V01] gi|256842819|ref|ZP_05548307.1| adenine-specific DNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256848883|ref|ZP_05554317.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-1A-US] gi|262045785|ref|ZP_06018749.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-3A-US] gi|293380462|ref|ZP_06626529.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1] gi|295692607|ref|YP_003601217.1| adenine-specific DNA methylase [Lactobacillus crispatus ST1] gi|227863112|gb|EEJ70558.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus crispatus JV-V01] gi|256614239|gb|EEU19440.1| adenine-specific DNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256714422|gb|EEU29409.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-1A-US] gi|260573744|gb|EEX30300.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-3A-US] gi|290922969|gb|EFD99904.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1] gi|295030713|emb|CBL50192.1| Adenine-specific DNA methylase [Lactobacillus crispatus ST1] Length = 333 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 115/365 (31%), Gaps = 47/365 (12%) Query: 87 SLSTLGSTNTR--NNLESYIA-SFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFS 141 + L + L++ + SF++ F++ + + ++ + + Sbjct: 3 NFEKLFNQFLDCVQTLQTALNVSFTEALVETFDNLESGKIKVENGAPDEKTVAELSQKYQ 62 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 I+ D + + + ++ L + ++ TP + + L+ Sbjct: 63 AIDY--DEISQKEKAQVFTFLTLKAVNDDGFDVNQMPTPPAIATVVAMLMHKLLKDQ--- 117 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP GTG L ++ + G + + + + + + Sbjct: 118 ----KMEIVDPAVGTGNLLFSIISQLKALNHS---KDNYQLVGIDNDEDM--LSLTDVAA 168 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 D + L + +S+ P G + D++A E++ + Sbjct: 169 HLNNIDIE------LYHQDALMP--WMCPNADAIVSDLPVGY-YPVDENAKNFENQAKKG 219 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F +L + + N L+ G A +V+ S L +G ++ WL Sbjct: 220 HSF---------AHLLLIEQIINNLKP----NGYAFLVVPKSIL----SGKIGADFMPWL 262 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGK 439 + ++AIV LP D+F + + N E + +V L L Sbjct: 263 TKKVYLKAIVELPDDMFKNKFNQKSVLVFQNHGDEAKASEVLLTKLGSLKKEEALIQFNV 322 Query: 440 KRRII 444 K Sbjct: 323 KLNEW 327 >gi|311109965|ref|YP_003982816.1| hypothetical protein AXYL_06819 [Achromobacter xylosoxidans A8] gi|310764654|gb|ADP20101.1| hypothetical protein AXYL_06819 [Achromobacter xylosoxidans A8] Length = 283 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 16/153 (10%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD- 196 + S + + + + ++Y L + G F TP +V L +L D Sbjct: 77 QCLSHVVMALEERYQDFLGSLYMGL-----DLGNAGTGQFFTPYEVSLLMAKMLHGQRDL 131 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 A G TL DP G G L A D G L G +++ + Sbjct: 132 AELVRERGGFITLNDPCIGGGAMLIAAAEQFRDQG--LPSHRTLHVTGVDIDRTAVQMSY 189 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 + + + + QG++LS + + G Sbjct: 190 IQLSLLNVPAILL--------QGNSLSPEPYKG 214 >gi|207111303|ref|ZP_03245465.1| Type I restriction enzyme modification subunit [Helicobacter pylori HPKX_438_CA4C1] Length = 56 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%) Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKW 305 T+ +C M + + +I G TL + F +SNPP+ KW Sbjct: 1 NLTTYNLCRINMFLHDIN-----YSKFHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKW 54 >gi|315930741|gb|EFV09751.1| type I restriction modification DNA specificity domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 782 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 93/323 (28%), Gaps = 29/323 (8%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +GQ +A +A + + I F ++NPP+ Sbjct: 1 MYGQNEINILYADALASFELANTNNLEGEKAKPQI-----------ESNSFDLLIANPPY 49 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + + + + KN + ++ F + N +AAI+L Sbjct: 50 SV--KGFLETLSDKSKNTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILP 104 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 SS L S R L +N AIV L F T T + L ++T ++ Sbjct: 105 SSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENH 161 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKV 480 + + + + I E K + + +S L+ ++ Sbjct: 162 LISQDYSLIKERIEAENLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLTELEA 221 Query: 481 LRPLRMSFILDKT--GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 + R +F L + + L +L + + + Y Sbjct: 222 FKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLY-------FS 274 Query: 539 SIKSNEAKTLKVKASKSFIVAFI 561 + E +K + F+ Sbjct: 275 LSLNQEVLIIKSPSDIKEQKKFL 297 >gi|291530902|emb|CBK96487.1| DNA methylase [Eubacterium siraeum 70/3] Length = 2598 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 111/371 (29%), Gaps = 78/371 (21%) Query: 67 IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTI 124 I + K S Y S S LG +R F N +AI + + + Sbjct: 991 IREQPSEKEKTLSDYTLSSDDYSDLGGEKSR---------FRHNIEAIKTLKAIESENRN 1041 Query: 125 ARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR-FGSEVSEGAEDFMTPR 181 A ++ +L K S + + + E L + + F T Sbjct: 1042 ATPDEQKVLAKYVGWGGLSAAFNADNKSWADEYNEVSELLTSEEYANARESTMTAFYTSP 1101 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 +++ K + DP+ GTG F + + Sbjct: 1102 EIIGAVY--------DGLKSIGFDGGNILDPSAGTGNFFGAMPVEMREKSK--------- 1144 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 +G EL+ + + + S NI +G K + + +SN PF Sbjct: 1145 LYGVELDSVSARIAK------------QLYQSANITEG-AYEKRVLNDNFYDAAISNVPF 1191 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 G+ ++ + + N + K GG A + + Sbjct: 1192 GQ-FKVHDKRYDSLNLNIHD-------------------YFFAKSLDKVRPGGVIAFITT 1231 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418 S L S+ R+++ E + V LP F T + + + L Sbjct: 1232 SGTLDKSN-----SKFRKYMAERAELLGAVRLPNTAFKVVAGTEVTSDIIFLQK------ 1280 Query: 419 RGKVQLINATD 429 R K+Q +N+ + Sbjct: 1281 RDKIQSVNSEN 1291 >gi|323485199|ref|ZP_08090550.1| type I restriction-modification system methyltransferase subunit [Clostridium symbiosum WAL-14163] gi|323401518|gb|EGA93865.1| type I restriction-modification system methyltransferase subunit [Clostridium symbiosum WAL-14163] Length = 300 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 19/175 (10%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + ++ L + + F TP V L ++ ++ + Sbjct: 133 DQNQEQDFLGKMFMRL-----NLGNRSTGQFFTPYHVCELMAEVVATYALEKIEKYGYI- 186 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIR 262 ++ DP CG G L ++ + H P Q+++ +C + + Sbjct: 187 -SINDPCCGAGATLIAGVHVIRKQLEHCDTPRNYQNHILVVAQDVDEIVGLMCYIQISLL 245 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 L I+ G++++ + T P + + + + +K Sbjct: 246 GLAGF--------IKIGNSITDPMSTDDSSENYWYTPMYFSDVWSTRRMINQMNK 292 >gi|296126920|ref|YP_003634172.1| hypothetical protein Bmur_1892 [Brachyspira murdochii DSM 12563] gi|296018736|gb|ADG71973.1| protein of unknown function DUF450 [Brachyspira murdochii DSM 12563] Length = 1058 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 58/414 (14%), Positives = 111/414 (26%), Gaps = 118/414 (28%) Query: 105 ASFSDNAKAIFEDFD-------FSSTIARLE-----KAGLLYKICKN--FSGIELHPDTV 150 +F N IF+ D F + ++ +I + + Sbjct: 311 ENFYSNLLGIFKRADGKYNSGLFDFAKDTISGNIEIDNKVIKEIINELYYPLSPYEFSVI 370 Query: 151 PDRVMSNIYEHLIRR-------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 +M N YE + + EV + + TP +V + Sbjct: 371 SVEIMGNAYEQFLGKTITIGRNHSAKIELKPEVRKAGGVYYTPEYIVDYIVENTVGEAIR 430 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------------------------ 233 K + DP CG+G FL A ++ + Sbjct: 431 GKKPEEIANIKILDPACGSGSFLLGAYKYLLNYHIEYYNKIKDRAKFKGSKEDVIKENGD 490 Query: 234 -----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLS 273 K G +++ V +L++ LE + L Sbjct: 491 LTIWIKKQILRNNIFGVDIDSNAVEVTKLSLLMKCLEGESPASIQNNQDLFNERALPSLE 550 Query: 274 KNIQQGSTLSKDLFTGK-------------------------------RFHYCLSNPPFG 302 NI+ G++L F + F + NPP+ Sbjct: 551 DNIKSGNSLINSNFNSEGERLFASDEDTQYKIKCFSWDKEFSSVIKKGGFDIIIGNPPYV 610 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI--VL 360 K++ + +N + G D F+ + L+ G A + Sbjct: 611 KEYTD-----RESFENVKKGNLSKYYQGKMDLWYFFVCFGLDILKENGKLGFIAPNNWIT 665 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 ++ +S+I +++ D +F I T ++IL+ K Sbjct: 666 NAGASILRNKVLTDSKILKYVDFGDF---------RVFLEAGIQTMVFILNKEK 710 >gi|254426590|ref|ZP_05040305.1| hypothetical protein S7335_1273 [Synechococcus sp. PCC 7335] gi|196187602|gb|EDX82569.1| hypothetical protein S7335_1273 [Synechococcus sp. PCC 7335] Length = 296 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 15/135 (11%) Query: 159 YEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 Y+ + + ++ F TP + T + K I T+ +P G Sbjct: 90 YQDFLGEIAEDELLLNKRGGQFFTPYIICQAMTKMSFGDMKEQLKGK--GILTVCEPAVG 147 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 G + + VA G + ++ + + + L++ Sbjct: 148 GGAMVIASAEEVASQGIDPRSCLQ--FDCTDVSRDAFNMAYIQLSALGLQAV-------- 197 Query: 276 IQQGSTLSKDLFTGK 290 ++ G++LS + + + Sbjct: 198 VRHGNSLSMEYWEHR 212 >gi|166364661|ref|YP_001656934.1| hypothetical protein MAE_19200 [Microcystis aeruginosa NIES-843] gi|166087034|dbj|BAG01742.1| unknown protein [Microcystis aeruginosa NIES-843] Length = 1099 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 69/441 (15%), Positives = 133/441 (30%), Gaps = 115/441 (26%) Query: 39 TLLRRLEC--ALEPTRSAVREKYLA-----FGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 +R LE L + A + L + + S+ S + Sbjct: 201 IFIRYLEDRGILTQEYFEAIAQNNATWKALLNAPDDQLNMETEAKQHYIKILSDKSFTYA 260 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP---- 147 + F + + +E+ L + + F ++ P Sbjct: 261 LFNRLSQDFNG--DMFPSDEQEA----------ESVEQRHL--SLLQEFLQGDIDPQKKL 306 Query: 148 -------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 D +P ++S+IYE +E + TP +V + +L Sbjct: 307 FFWAYKFDIIPISLISSIYEEFYHESNTE-NIDNGTHYTPSSLVEFVLSKVLT--SDCLT 363 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEP 249 P + DP CG+G FL +A + + G E+ Sbjct: 364 THP----RILDPCCGSGIFLVEAFRRIVRHRVYQNQRQRLSWQELREILKNQIAGIEINS 419 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQG----------STLSKDLF------------ 287 E + + + L D+ I++G + LS+D Sbjct: 420 EAIRITAFSLYLALLNYQEPPDILLQIKRGEKLPFLIYQANGLSEDNHFNNLVCDNAFQE 479 Query: 288 -------------TGKRFHYCLSNPPFGKKWEKD-----------KDAVEKEHKNGELGR 323 + + + NPP+G KD + E+++ G+ R Sbjct: 480 FSNSEDVILSRNFSSQCADVVVGNPPWGSPKTKDKKGTKDLNIALQWCQERDYPVGDKER 539 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 S F+ + + L+ G +A+V+S+ F S E R+ L Sbjct: 540 -----------SQAFIWRVFDFLKD----NGWSALVVSTGIFFKTHDKSKE--FRQKWLN 582 Query: 384 NDLIEAIVALP--TDLFFRTN 402 + L++ +V D+FF++ Sbjct: 583 SVLLKEVVNFAHVRDIFFKSG 603 >gi|290959568|ref|YP_003490750.1| hypothetical protein SCAB_51701 [Streptomyces scabiei 87.22] gi|260649094|emb|CBG72208.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 1198 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 20/159 (12%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKE 201 + + R ++++Y HL + + + TP VV L L L+P +A Sbjct: 161 HDFEDASRDTRFLADLYGHL----SDQDRKSSGQVSTPDFVVELIHDLTLEPALEAHGST 216 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETH 252 + + DP CG+GGFL DA + S + HG +++P Sbjct: 217 AGPAGFRMIDPACGSGGFLLDAYARLCRRWSDARPDMSPWQRAARALASVHGCDIDPCAV 276 Query: 253 AVCVAGMLIRRLE------SDPRRDLSKNIQQGSTLSKD 285 ++ +L+ ++ D D+ + G L D Sbjct: 277 SISRFRLLMAAMDVARARRLDDVPDIPLLVATGDALLHD 315 >gi|223934434|ref|ZP_03626355.1| putative type II DNA modification enzyme [bacterium Ellin514] gi|223896897|gb|EEF63337.1| putative type II DNA modification enzyme [bacterium Ellin514] Length = 1551 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 67/224 (29%), Gaps = 55/224 (24%) Query: 154 VMSNIYEHLI-------------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 ++YE L+ ++ + + + TP +V LDP Sbjct: 416 EFGSVYERLLELHPVIHPATNTLPSHFAFKQAAGNERKTSGSYYTPSSLVECLLDSALDP 475 Query: 195 -DDALFKESPGMIRT----------LYDPTCGTGGFLTDAMNHVA--------------- 228 + K + + DP CG+G FL A +A Sbjct: 476 VLEDRLKNFARLGFKSADQAVIALKVCDPACGSGHFLIAAAQRIARRLALLRSNGDEPSV 535 Query: 229 -DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDL 286 + + +G ++ P + +C G+ + +E P L +++ G++L Sbjct: 536 SELRHTLREVISHCIYGVDINPMSVELCKVGLWLEAMEAGKPLSFLDHHVRCGNSLL--- 592 Query: 287 FTGKRFHYCLSNPP---FGKKWEKDKDAVEKEHKNGELGRFGPG 327 G P F DK A K R G G Sbjct: 593 --GATPALIAEGVPDDAFTAIEGDDKKACAVLKKLNARERRGFG 634 >gi|28867279|ref|NP_789898.1| helicase domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850513|gb|AAO53593.1| helicase domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 1636 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 90/332 (27%), Gaps = 49/332 (14%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGT 216 +Y+ R +++E TP +VV + F ++ G + DP GT Sbjct: 867 LYDKFFRNAFPKMTERLGIVYTPVEVVDFILHSVNHLLQQEFGQTLGSKGVHIIDPFTGT 926 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSK 274 G F+T + H EL + + + E + Sbjct: 927 GTFITRLIQSGLIKPEELPHKYKHEIHANELVLLAYYIAAINIEAAYHG-EVIDGYTPFE 985 Query: 275 NIQQGSTL------------------SKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEK 314 I T + + NPP+ G+K E D +A Sbjct: 986 GICLTDTFQMYEKDDLVDALLVDNSARRKRQKNLDIRVIVGNPPYSEGQKSENDNNANLG 1045 Query: 315 EHKNGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 K R S G + G V ++ L A Sbjct: 1046 YPKLDSQIRSTYARQSAATLSKGLYNSYIRAIRWASDRLGESGIVGFVTNAGFLEARFAD 1105 Query: 372 SGESEIRRWLLENDLIEAIVAL----------------PTDLF-FRTNIATYLWILSNRK 414 +R+ L E I L +F + A ++ L Sbjct: 1106 G----MRKCLAEEFSNIYIFHLRGLRGKHTSGERAKQEGGQIFGMGSGTAICIFFLVKNT 1161 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 ERRG + ++ + + + K + + D Sbjct: 1162 DSERRGNIYF-HSIEEYLDRDQKLAKLKELQD 1192 >gi|325956439|ref|YP_004291851.1| adenine-specific DNA methylase [Lactobacillus acidophilus 30SC] gi|325333004|gb|ADZ06912.1| Adenine-specific DNA methylase [Lactobacillus acidophilus 30SC] gi|327183256|gb|AEA31703.1| adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1118] Length = 333 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 52/350 (14%), Positives = 106/350 (30%), Gaps = 57/350 (16%) Query: 98 NNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGL-----------LYKICKNF 140 N E F D + + + T LE+ + + ++ K + Sbjct: 2 ENFEKLFNQFLDCVQTLQNALNVSFTEALVETFDNLEQGKIKVENGAPDEKTVEELSKKY 61 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 I+ D + + + ++ L + ++ A TP + + L+ Sbjct: 62 QAIDY--DHISQKDKAQVFTFLTLKAVNDDGLDANQMPTPPAISTVVAMLMHKLLKDE-- 117 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 + DP GTG L ++ + G + + E + + Sbjct: 118 -----EMEIVDPAVGTGNMLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNL--TDVA 167 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + D + L + +S+ P G + + H Sbjct: 168 AHLNDIDIE------LYCQDALMP--WMCPNADAIVSDLPIGYYPIDENAKNFENHAKKG 219 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 S +L + + L+ G A +V+ S L +G ++ W Sbjct: 220 H----------SFAHLLLIEQIIKNLKSD----GYAFLVVPKSIL----SGKIGADFMPW 261 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 L + ++AIV LP D+F + + N +E + +V L L Sbjct: 262 LTKKVYLKAIVELPDDMFRNKFNQKSILVFQNHGSEAKPSEVLLTKLDSL 311 >gi|167626553|ref|YP_001677053.1| hypothetical protein Fphi_0335 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596554|gb|ABZ86552.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 960 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 77/560 (13%), Positives = 167/560 (29%), Gaps = 120/560 (21%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 N++ I DN +F D +++ ++ +F Sbjct: 258 GTNIDDRIKHTVDNLADVFRAVDLRKILSKFGRSTKTQDPIVHF---------------- 301 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------- 208 YE + + S++ + + TP+ VV + + + F S G+ T Sbjct: 302 --YEDFLSEYDSKLRKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQID 359 Query: 209 -----------------------LYDPTCGTGGFLTDAMNHVADCGSHH---------KI 236 + DP GTG FL +A+ + + + Sbjct: 360 SQTTDKRAKSGYKQIEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEE 419 Query: 237 PPILVPHGQELEPETHAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------- 282 I +G EL ++A+ ML+ + + +I ++L Sbjct: 420 HLIPRLNGFELLMASYAMAHLKLDMLLTDTGYKPKSTQSQRFHIYLTNSLEEHHPDTGTL 479 Query: 283 -----------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + + + NPP+ + + ++ + + Sbjct: 480 FANWLSNEANEANQIKKDTPVMVVMGNPPYSGISSNTGEWITSLIEDYKYVDGVHFNERK 539 Query: 332 ---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387 +D + F+ + +E NG G A + L N +R LL+ D I Sbjct: 540 HWLNDDYVKFMRYGQYYIEK--NGSGILAFINPHGFLDNPTFRG----MRYSLLKTYDKI 593 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRG----KVQ-LINATDLWTSIRNEGKKRR 442 + L + S +K G V ++ + ++ KK Sbjct: 594 YT-IDLHGN--------------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNN 638 Query: 443 IINDDQRRQILDIYVSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 + + D+Y R + +F + G+++++ +P D + A E Sbjct: 639 ELAEVYH---YDLYGKRNDKYEFLSQNSLSSIGFKKVEYSKPYYFFIPKDDSQRASYEKG 695 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES---FVKESIKSNEAKTLKVKASKSFIV 558 + L P + + + ++ I + F ++ ++ + K+ Sbjct: 696 FSVVSLFPENVTGIVTARDKVVIDISKQKLLDRINNFCNNKYSDDDIRSWLFRNKKNGKY 755 Query: 559 AFINAFGRKDPRADPVTDVN 578 ++ G K A N Sbjct: 756 LAGDSRGWKLTEAREKIKNN 775 >gi|302668857|ref|YP_003832682.1| hypothetical protein bpr_II162 [Butyrivibrio proteoclasticus B316] gi|302397197|gb|ADL36100.1| hypothetical protein bpr_II162 [Butyrivibrio proteoclasticus B316] Length = 244 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 10/172 (5%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + ++Y L S TP V + + D + K+ + Sbjct: 80 NEDPNQDFLGDMYMKL-----SMGERAWGQIFTPYHVCEMMAQMTFDSPEKDIKDHGYV- 133 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 T DP G G L + + D G K ++ GQ+++ + + I + Sbjct: 134 -TTLDPAVGGGAMLIASAQALRDAGYDPKTQ--MIAVGQDVDITAVYMAFVQLAIIGCPA 190 Query: 267 -DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 D G+ L D + + L + ++ + + + +K Sbjct: 191 VVVHGDSLAEPYTGNPLFVDDNSSYWYTPMLFTKAWFERRKAFIEELRDNNK 242 >gi|294155654|ref|YP_003560038.1| hypothetical protein MCRO_0406 [Mycoplasma crocodyli MP145] gi|291600460|gb|ADE19956.1| hypothetical protein MCRO_0406 [Mycoplasma crocodyli MP145] Length = 494 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 48/449 (10%), Positives = 124/449 (27%), Gaps = 71/449 (15%) Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPD 152 + +N + + + +++ + ++ L + + F + D Sbjct: 67 DLASNEINNLGLEKETKESVLASLNLIRGVSTGLNNDREKLQRFIEYFISDVYYSIKSDD 126 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +Y + ++ + +TP L L + D Sbjct: 127 LFLETLYMEIDKK---AEATDKGIVLTPIFAAELMVDLAEIDYKKDI---------VADL 174 Query: 213 TCGTG-GFLTDAMNHVADCGSHHKIPPILV-------------PHGQELEPETHAVCVAG 258 GTG L +++ + I + +P+ +C+A Sbjct: 175 CSGTGLFSLLSYSKMLSNMNKDFENKKIGHGEYKTYEERLYNSIIANDSDPKMITLCLAN 234 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 L++ L + + Q ST + + + + NPP+ + Sbjct: 235 FLLKSLNHNLIYNQDVLKLQKSTFKIEINNEKITIQPNKAILNPPYEDTHKP-------- 286 Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + L + + G + +++ + Sbjct: 287 --------------------LDILYKNIELVTKRGSIGNKIVVIIP------SQKFGNNK 320 Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNI--ATYLWILSNRKTEERRGKVQ---LINATDL 430 ++ +L +E ++ + DLF + +++ + K ++ + + Sbjct: 321 KVFSKILNISTLETVIKMQEDLFTDSGKSQPASIFVFNADKPHSNEDVIRYYNFTDTGFV 380 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490 + K I D + ++ I GK S + + Sbjct: 381 YLKDSGLVDKNGIYKDKKNELLMKISGKWNRGK-SNNFIRTWNNFYEVNKDLEFGTKINP 439 Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDIL 519 + + EADITW ++ + L Sbjct: 440 KLVDVKKEEADITWENITIKKMLSEKEDL 468 >gi|301155806|emb|CBW15274.1| unnamed protein product [Haemophilus parainfluenzae T3T1] Length = 253 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 23/191 (12%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 ++ L ++ F+ I + + +++ L + + TP + H Sbjct: 62 DEKQALSRL---FNIIVEALEHKTYDFLGSVFMSL-----DLGDQYKAQYFTPGHIAHFM 113 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 A+ L +L K TL +PTCG+G + +A N++ + + ++L Sbjct: 114 AAVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDL 169 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWE 306 + +C M + + + + G+TL + + + L N + KK E Sbjct: 170 DFTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHILGN--WNKKLE 219 Query: 307 KDKDAVEKEHK 317 E E++ Sbjct: 220 SADSYTEAEYQ 230 >gi|225620244|ref|YP_002721501.1| restriction enzyme methylase subunit [Brachyspira hyodysenteriae WA1] gi|225215063|gb|ACN83797.1| restriction enzyme methylase subunit [Brachyspira hyodysenteriae WA1] Length = 1011 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 66/469 (14%), Positives = 125/469 (26%), Gaps = 131/469 (27%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 LR E +++ G S + YN+ + S + Sbjct: 240 IFLRAAEDRGIEEYGDLKKTCENKGESFYGNLLKIFEKADGRYNSGLFDFSK-------D 292 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 ++ S I + K I LY + + ++ N Sbjct: 293 SISSSIEIDNKVIKEII---------------NELY-----YPLSPYEFSVISVEIIGNA 332 Query: 159 YEHLIRR-------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 YE + + EV + + TP +V A + K Sbjct: 333 YEQFLGKTITIGKNHSAKIELKPEVRKAGGVYYTPEYIVDYIVANTVGEAIKGKKPEEIA 392 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSH-----------------------------HKI 236 + DP CG+G FL A ++ + K Sbjct: 393 NIKILDPACGSGSFLLGAYKYLLNYHIEYYNKIKDRAKFKGSKEDVIKENGDLTIWIKKQ 452 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGST 281 G +++ V +L++ LE + L NI+ G++ Sbjct: 453 ILRNNIFGVDIDSNAVEVTKLSLLMKCLEGESPASIQNNQDLFNERALPSLEGNIKLGNS 512 Query: 282 LSKDLFTGK-------------------------------RFHYCLSNPPFGKKWEKDKD 310 L F + F + NPP+ K++ Sbjct: 513 LINSNFNSEGERLFASDEDTQNKIKYFSWDKEFPSVIKKGGFDIIIGNPPYVKEYTD--- 569 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI--VLSSSPLFNG 368 + +N + G D F+ + L+ G A + ++ Sbjct: 570 --RESFENVKKGNLSKYYQGKMDLWYFFVCFGLDILKENGKLGFIAPNNWITNAGASILR 627 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +S+I +++ D +F I T ++IL+ K +E Sbjct: 628 NKVLTDSKILKYIDFGDF---------RVFLEAGIQTMVFILNKEKIDE 667 >gi|240851279|ref|YP_002972682.1| helicase/methyltransferase [Bartonella grahamii as4aup] gi|240268402|gb|ACS51990.1| helicase/methyltransferase [Bartonella grahamii as4aup] Length = 1652 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 64/245 (26%), Gaps = 27/245 (11%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + ++ + LEK Y K + P ++ +Y+ R E Sbjct: 815 DVLDEANLDKESKDLEK---FYASVKLRASGITDPKAKQRLIV-ELYDKFFRYAFPRTVE 870 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGM-IRTLYDPTCGTGGFLTDAMNHVADCG 231 TP +VV + D + F ++ G + DP GTG F+T + Sbjct: 871 KLGIVYTPVEVVDFILHSVNDVLEQEFGQTLGSSGVHIMDPFTGTGTFITRLLQSGLIKP 930 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL------- 282 K H E+ + + M L + I T Sbjct: 931 EEMKHKFCHEIHANEIVLLAYYIAAINIEMTYHGL-MGGDYVPFEGICLTDTFQLYEQEK 989 Query: 283 ------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + + NPP+ + + D + R Sbjct: 990 DLISDLLVDNSTRRSRQKELDIRVIVGNPPYSSGQKSENDNAQNIGYPKLDRRIRETYAA 1049 Query: 331 ISDGS 335 S S Sbjct: 1050 QSKAS 1054 >gi|40643146|emb|CAE14681.1| unnamed protein product [Leptospira phage LE1] Length = 1971 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 71/539 (13%), Positives = 145/539 (26%), Gaps = 100/539 (18%) Query: 52 RSAVREKYLAFGGSNIDLESFVKVAG---------YSFYNTSEYSLSTLGSTNTRNNLES 102 + A+ ++ L +++ A Y F S + + +S Sbjct: 414 KDALLKEGLDQKAEEWVDQAYKSDAKSLNDLLNKAYRFVQISSDDSNKIRKGLKSIPHQS 473 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + + S N + + E F K + + T + + YE Sbjct: 474 NLETASKNVEIVKEKFSQKKQFEINSKCK------QILASTPPSQITEEQKEILRQYEGS 527 Query: 163 IRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + F TPR ++ + + +P+ G G Sbjct: 528 GGQSTNDDAESNRGMLYQFFTPRKMI--------SKVQDIMARYLKPGDSGLEPSAGIGR 579 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 F G K ++ + + + I +++ + + Sbjct: 580 F---------AEGEGSKYNWDMLEYNPDDN-TAFQIAR----ILHPDANVSDKAFETLFV 625 Query: 279 GSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 S + + GK++ + NPP+G + A+E + N F Sbjct: 626 DSKNRSVGENYKGKKYKFISGNPPYG-EMSGKFKAIEGKGWNRYEHYF------------ 672 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPT 395 N+ GG V+ S+ L +GE+ ++ + + +L+EA +P Sbjct: 673 ------INRGLDTLEEGGTMFYVVPSTFL-----QAGETTWKKKIFAKAELLEA-YRMPE 720 Query: 396 DLFFRTNIATYLWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 F T I + +L GK N ++ + R + Sbjct: 721 GSFGNTAIGVDVIVLRKNTTGTQDNANAFNGKYFEENPEHVFGD--TLERTNRFGRPETY 778 Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509 + + + +S L D L + D K Sbjct: 779 VK------GKADAFYSMTLPSPK-----------EMSQAQKDAISLGLMGNDNAKGKRKA 821 Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 + K ++ + K + K + + F F F KD Sbjct: 822 EIAEGTKKVNKTATKKEEIKNTI------AEKKDPTKKIDTYTQEEFNTKFNKKFTEKD 874 >gi|187778265|ref|ZP_02994738.1| hypothetical protein CLOSPO_01857 [Clostridium sporogenes ATCC 15579] gi|187771890|gb|EDU35692.1| hypothetical protein CLOSPO_01857 [Clostridium sporogenes ATCC 15579] Length = 576 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 43/310 (13%), Positives = 96/310 (30%), Gaps = 40/310 (12%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS--EVSEGAEDF 177 F I ++ +L + E + + YE++ ++ + + Sbjct: 4 FKDNIEKIF--NILISPINSIYKYEAINNFKRKLSIGK-YENISLKYYEIIKGKKETGVI 60 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--------D 229 TP+++ + + D + DP+CG G L ++ + Sbjct: 61 YTPQEISNYMIENTISKKD----IINNPFIKILDPSCGCGNILIPCFFYLKNIFNENLQE 116 Query: 230 CGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + I Q + ++ + ++I L + N ++ L Sbjct: 117 INKKNNINLKEQYINQHILDNNLYGFDIDSIAIKILII-DLFYLTGYYNNNNFKKKDFLI 175 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 +D+ F + NPP+ +V+KE+ ++G D S F ++ Sbjct: 176 EDI--NNNFDVYIGNPPY-----VGHKSVDKEYSMLLKEKYGEIYKDKGDISYCFFINAL 228 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFRTN 402 N N + + S + +R++L EN + I+ F Sbjct: 229 N----YSNINSKITFITSRYFM----ESKSGYNLRKYLKENCNVYKILDFYGIRPFKGAG 280 Query: 403 IATYLWILSN 412 I + + Sbjct: 281 IDPAIIFIDR 290 >gi|21223693|ref|NP_629472.1| DNA methylase [Streptomyces coelicolor A3(2)] gi|5139576|emb|CAB45593.1| putative DNA methylase [Streptomyces coelicolor A3(2)] Length = 1200 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 68/454 (14%), Positives = 139/454 (30%), Gaps = 95/454 (20%) Query: 35 ILPFTLLRRLEC---ALEP--------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83 +L +R E EP R +Y A+ S+ D + +F Sbjct: 69 VLGTVFVRFCEDNRLIPEPYLTGPDGDRRELAEARYDAYVESDDDPT-YRGWLEKAFDEL 127 Query: 84 SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG- 142 + L N L I D A+ + E + ++AG+L +F+ Sbjct: 128 GQGQAGRLLFDKRHNPLYQ-IPLSHDGARELVE------FWRQRDEAGVL---VHDFTDP 177 Query: 143 -IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 E + R + ++Y+ L + TP V ++P F Sbjct: 178 LNEDGTEGWDTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRTMNPAVREFGY 233 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETH 252 + DPTCG+G F+ A + + + + HG ++ P Sbjct: 234 EE---LKMIDPTCGSGHFVLGAFRRLVRLWAEGQPGRDVHERVRAALHSIHGVDINPFAV 290 Query: 253 AVCVAGMLIRRLESDPRRDLSK--------NIQQGSTL---------------------- 282 A+ +L+ + + R L++ ++ G +L Sbjct: 291 AIARFRLLVAAIAASGVRTLAEAAKYEWPIHLAVGDSLIKARQLELTLGGDEDGGYDPLA 350 Query: 283 -----SKDLFTG------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 ++D+ R+H + NPP+ +K + + +E + G + +P Sbjct: 351 SFTYATEDVHEHPGILQQGRYHVVVGNPPYITVKDKKLNELYRELYDACGGTYALSVP-- 408 Query: 332 SDGSMLFLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 F + + G G + ++S + G I R+ + + Sbjct: 409 ------FAQRFFELAKRGGDEGRAYGMVGQITANSFMKR---EFGTKLIERYFRDRVELT 459 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 ++ T + + K +R + Sbjct: 460 EVIDTSGAYIPGHGTPTVILVGKRCKGSQRLSTI 493 >gi|169835034|ref|YP_001715745.1| hypothetical protein CLK_A0118 [Clostridium botulinum A3 str. Loch Maree] gi|169409141|gb|ACA57551.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 972 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 51/311 (16%), Positives = 94/311 (30%), Gaps = 46/311 (14%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 IL +R L G E+ +K+A S +S Sbjct: 182 ILRLIFIRFLIDRGID-----IGYDGFNGDIKESQEALLKLANNKRKLYSFFSYLKNKFN 236 Query: 95 NTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 LE Y + +D + + F +E L + +F+ I + Sbjct: 237 GNLFELEDEVYDEALNDEVFELLKCFLSGKQ--EMESGQLSFLPLYDFNIIPIEL----- 289 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +SNIYE L+ + + F TP + + + + DP Sbjct: 290 --ISNIYEVLLGEKAQDDDK---AFYTPEYLADYIVK-----ESLGTFLTKNSQCKVLDP 339 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCVAGMLIR 262 +CG+G FL +++ + +G + PE V + + + Sbjct: 340 SCGSGIFLVESLQLIISKNVDANGYIKDNDKLCQLIESNIYGVDSNPEAIDVTIFSLYLT 399 Query: 263 RLES----DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKD 310 + N++ + D F + +F + L NPP+G E Sbjct: 400 LFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNPPWGSVKEGLHS 459 Query: 311 AVEKEHKNGEL 321 E+K + Sbjct: 460 QYCDENKIPQY 470 >gi|170717936|ref|YP_001784986.1| type III restriction protein res subunit [Haemophilus somnus 2336] gi|168826065|gb|ACA31436.1| type III restriction protein res subunit [Haemophilus somnus 2336] Length = 1365 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 51/418 (12%), Positives = 109/418 (26%), Gaps = 68/418 (16%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I + S I+ ++ ++Y++ + ++ + TP VV + D Sbjct: 706 IQQRISNIKSPEGRQS--IIKDLYDNFFAQAFKKLKDKLGIVYTPIQVVDFIIRSVEDVL 763 Query: 196 DALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 F S + DP GTG F+T + H E+ + + Sbjct: 764 QNEFNASLADKGVQILDPFTGTGTFITRLLQSGI-IPPEKLPQKYNEIHANEIVLLAYYI 822 Query: 255 CVAG-------MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------------------ 289 +L + E+ I T Sbjct: 823 AAINIESVYHSLLAKNNENPTAYQPFNGICLTDTFQMYEKEDLIDQILVENSERRKRQKE 882 Query: 290 KRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHL--AN 344 + NPP+ G+ D + E R L + + + L+ ++ Sbjct: 883 LDIQVIIGNPPYSVGQTSANDNNENTSYPLLEEKIRNTYALHSTATNKNALYDSYIKAIR 942 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN------DLIEAIVA------ 392 G + ++ L A +R+ L + + + Sbjct: 943 WASDRIQDKGVIGFITNAGFLETNAANG----LRKCLHDEFSDLYIFHLRGAIRGKSGIS 998 Query: 393 ---LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK--------- 439 ++F T +A + + + K + G + + D + K Sbjct: 999 AKKEGQNVFDIMTGVAISILVKNPDKEKN--GNIHFYDIGDFLSKKEKLEKIAEFGSING 1056 Query: 440 --KRRIINDDQRRQILDIYVSRENGKFSRML-DYRTFGYRRIKVLRPLRMSFILDKTG 494 K + Q D R+ S M+ + + + ++ Sbjct: 1057 ITKTEQWQEIIPDQFNDWLNQRDPNFDSYMVLGSKDKNNKEPTIFENYSAGLQTNRDA 1114 >gi|153955772|ref|YP_001396537.1| DNA modification methyltransferase [Clostridium kluyveri DSM 555] gi|146348630|gb|EDK35166.1| Predicted DNA modification methyltransferase [Clostridium kluyveri DSM 555] Length = 587 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 53/336 (15%), Positives = 105/336 (31%), Gaps = 54/336 (16%) Query: 160 EHLIRRFGS--EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 E+ +++ +++ A T R++ + L++ D + DP CG G Sbjct: 41 EYFSQKYYELVSINKRAGIVYTQRELSYFMIKNLIEEKD----VIYNPFVKIVDPACGCG 96 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 L+ ++ + V + + +H VC + + D N Sbjct: 97 NILSVCFFYLRHIFIKNIEVINNVNNINLKLENINSHIVCN---NLFGFDIDEIALKILN 153 Query: 276 I---------QQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 I Q+ + + KD K+F + NPP+ + + + K Sbjct: 154 IDLFSISGEFQKENFVLKDFLIDAIEKKFDIFIGNPPY-IGHKSIEKKYSETLKRVYKNI 212 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + SD F LE G+AA + A SG ++R +L Sbjct: 213 YKD----KSDVYYCFFEKSLKSLEKA----GKAAFITPRYFC---EACSG-KQLREFLST 260 Query: 384 NDLIEAIVALPTDLFF------RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 N I IV F+ + + N+K + ++ + ++ + Sbjct: 261 NTTIYKIVD-----FYGIRPFKGVGVDPIIIFFRNKKGLNNKIEIIKPDKSE-----KKG 310 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 K + +I Y + S + F Sbjct: 311 RNKFYDSLFLNKDKI--RYKKFFIPQSSIDDNGWVF 344 >gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter aurescens TC1] gi|119951547|gb|ABM10457.1| putative Helicase [Arthrobacter aurescens TC1] Length = 1605 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 81/292 (27%), Gaps = 52/292 (17%) Query: 137 CKNF-SGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 + F + + + + + + ++ +YE + +E TP +VV Sbjct: 805 LEKFYASVRMRAEGIDNAEGKQKIITELYEKFFKLAFPRAAESLGIVYTPVEVVDFIIRS 864 Query: 191 LLDPDDALFKESPGMIRT-----LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 + D + + G T + DP GTG F+ + H Sbjct: 865 V----DDVLRSEFGASLTDRGVHVLDPFTGTGTFIVRLLQSGLIRPEDLLYKYTNDLHAN 920 Query: 246 ELEPETHAVCVAGM--LIRRL----ESDPRRDLSKNIQQGSTLS----KDLFTGKRF--- 292 E+ + + + + L + + I T D F Sbjct: 921 EILLLAYYIAAINIEATLHGLLTEQDPEAGYVPFDGIVLTDTFQMTEDDDTLDNVIFPQN 980 Query: 293 ------------HYCLSNPPFGKKWEKDKDA--------VEKEHKNGELGRFGPGLPKIS 332 + NPP+ DA ++ + R L + Sbjct: 981 NERAAHQKALDIRVIVGNPPYSVGQGSQNDANANLKYPTLDASIERTYAARSRAALKRNL 1040 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 S + + A+ GG A V + + + A +R+ L + Sbjct: 1041 YDSYIRAIRWASNRLETSKHGGIVAYVSNGGYIDSNTADG----LRKTLADE 1088 >gi|307822928|ref|ZP_07653158.1| conserved hypothetical protein [Methylobacter tundripaludum SV96] gi|307735703|gb|EFO06550.1| conserved hypothetical protein [Methylobacter tundripaludum SV96] Length = 985 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 79/259 (30%), Gaps = 63/259 (24%) Query: 208 TLYDPTCGTGGFLTDAMN----HVADCGSH--------------HKIPPILVPHGQELEP 249 + DP+CG+G FL A + + + + +G ++ Sbjct: 375 KVIDPSCGSGAFLVAAFDVFAPYYRELAQALRRLYPDTLEAFNGDRAILTHNLYGVDINA 434 Query: 250 ETHAVCVAGMLIRRLESDPRRDL-SKNIQQGSTLS--------------------KDLFT 288 + + ++ + + D ++ G++L K++ Sbjct: 435 GAIEIAKLSLWLKTAKPGHKLDSLDGHLLCGNSLRFQPDSKSRWSSEHFGWNTTFKNILA 494 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML---FLMHLANK 345 F L NPP+ V E SD + L F Sbjct: 495 KGGFDVVLGNPPY----------VRMEVLKPFKPYLSANYAVASDRADLYAYFYEIGLRL 544 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIA 404 L+ GG + SS+ G SGE +RR+LL+N ++ +V +F Sbjct: 545 LKP----GGCLGYISSSTFFKTG---SGE-PLRRYLLDNARLQTVVDFGDLQVFEGVTTY 596 Query: 405 TYLWILSNRKTEERRGKVQ 423 + L K E V Sbjct: 597 PAIVCLEKGKAES--DHVL 613 >gi|291037371|ref|ZP_06568335.1| DNA helicase restriction enzyme Type III R subunit [Gluconacetobacter xylinus NBRC 3288] Length = 1737 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 49/378 (12%), Positives = 102/378 (26%), Gaps = 51/378 (13%) Query: 105 ASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S + + + D RLE + + SGI+ V+ +Y+ Sbjct: 812 NPMSRAMQTVLDALDRHSLHKETDRLEAFYT--SVRERASGIDTSYGRQK--VIKELYDG 867 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFL 220 ++ + + TP +VV + D + F ++ G + DP GTG F+ Sbjct: 868 FFQKAFPRLKDRLGIVYTPIEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTFI 927 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQG 279 T + H E+ + + + + D + + I Sbjct: 928 TRLLQSGLITKEQMLHKYRQELHANEIVLLAYYIASINIEASFSDLMDGTYEPFEGICLT 987 Query: 280 STLS------------KD------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 T +D + NPP+ E D + Sbjct: 988 DTFRLNEPHDLVSSTLEDNNRRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVTYPTLD 1047 Query: 322 GRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 R + S + + G V ++ L A Sbjct: 1048 TRIAKTYAERSSATNKRALYDSYIRAIRWSSDRIGDCGVIGFVTNAGFLDANTANG---- 1103 Query: 377 IRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGK 421 +R+ L E + L + +F + + ++ + +G+ Sbjct: 1104 LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISLMVKNPNAKEQGR 1163 Query: 422 VQLINATDLWTSIRNEGK 439 + + D T + + Sbjct: 1164 ILFHDIGDYLTREQKLKR 1181 >gi|301063312|ref|ZP_07203857.1| N-6 DNA Methylase [delta proteobacterium NaphS2] gi|300442609|gb|EFK06829.1| N-6 DNA Methylase [delta proteobacterium NaphS2] Length = 1020 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 71/462 (15%), Positives = 136/462 (29%), Gaps = 91/462 (19%) Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPD 195 +F +P +S IYE + + + A + TP +L+ Sbjct: 273 HFDFQAYDFSYIPIETLSIIYEQFLHSSEEDGTTKGKKAGAYYTPLP----LVNFVLNEL 328 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQE 246 + + G DP+CG+G FL + + + + G + Sbjct: 329 ETRYPLVEG--MRTLDPSCGSGAFLVQCYRALVEKRLAKNGSILPTELSELLVRHIFGVD 386 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKN-------IQQGSTLSKDLF----------TG 289 + + V +L+ L+ DL N ++ + D F Sbjct: 387 RDGDACRVAEMSLLLTLLDYTDPPDLENNPRFKLPVLRGSNIFEADFFDPSSKWVARSNN 446 Query: 290 KRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 FH+ + NPP+ + + +D +E G +I++ K Sbjct: 447 LSFHWLVGNPPWREFNSKNQEDRDVREWATQHADSCPVGGNQIAEA-------FVWKSLP 499 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 N A IVL + LF + + R+ FFRT A + Sbjct: 500 LLNESAVAGIVLPAMTLFKFES----ANFRKQ-----------------FFRTVRAWCVA 538 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 SN G+ +L T ++ G + + +IL + + + Sbjct: 539 NFSNLAYVLFSGRAELPAMTLFFSPETESG-----VAGEHNDKIL-TFAPFVVNQKA--- 589 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 R R R ++ + +G ++I+ K + W ++ Sbjct: 590 -------NRSTRERSKRDTWSIVVSGSE--LSEISVAKAATGEMRPW---------KLAM 631 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 +G +LK + F +DP Sbjct: 632 WGTFRDEKLLRRIERRFPSLKTFLKSKGLTQPHQGFELRDPT 673 >gi|34558224|ref|NP_908039.1| hypothetical protein WS1930 [Wolinella succinogenes DSM 1740] gi|34483943|emb|CAE10939.1| conserved hypothetical protein [Wolinella succinogenes] Length = 615 Score = 54.2 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 76/238 (31%), Gaps = 29/238 (12%) Query: 97 RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHP 147 + +Y+ ++ + + + + + + + +L + + + + Sbjct: 2 NQKIFNYLKKYNKEVFPMNRLLVSTYIYLNKLEVKKNKKILDLLIYEQNEEEYKSLNEFM 61 Query: 148 DTVPDRVMSNIYEHLIRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 V + YE L+ F TP+D+ T + Sbjct: 62 LLVKEIERDFTYEDLLELFEFVISPSDKLVNGAIYTPKDIREFITHQAFEQHRNNQNIY- 120 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + D +CG GGFL DA + + +K G +++P +++ +L+ Sbjct: 121 --DFKIADISCGCGGFLIDATKVLKEKTNKSYKQIYKENIFGVDIQP--YSIERTEVLLT 176 Query: 263 RLESDPRRDL---SKNIQQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKD 310 L + D ++ +L D + F L NPP+ D+ Sbjct: 177 LLAIEYGEDEEIFDFHLYDADSLEFDWYKENSQIEVSNGFDIILGNPPYVCSRNMDEK 234 >gi|269125713|ref|YP_003299083.1| putative type II DNA modification enzyme [Thermomonospora curvata DSM 43183] gi|268310671|gb|ACY97045.1| putative type II DNA modification enzyme [Thermomonospora curvata DSM 43183] Length = 1219 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 51/226 (22%) Query: 109 DNAKAIFEDFDFSSTIAR--LEKAGLLYKI--CKNFSGIELHPDTVPDR------VMSNI 158 +FE + + L+ LL I + H D + ++ Sbjct: 204 PALGGLFEQTGIDALLHECSLDDEHLLEAIRSLSQVRDHKTHRTLWVDFARMDVEELGSL 263 Query: 159 YEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKES 202 YE L+ RR G + + + TP +V LDP D + Sbjct: 264 YESLLEHVPGYDPAERAFVLRRLGGNERKISGSYYTPPSLVEALLDAALDPVIDDALESG 323 Query: 203 PGMIR--------TLYDPTCGTGGFLTDAMNHV----------------ADCGSHHKIPP 238 T+ DP CG G FL A + + Sbjct: 324 RTAAERERALLSLTVCDPACGPGRFLVAAARRIAGRLAFVRTGDPRPPARQVRRALREVI 383 Query: 239 ILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLS 283 +G +L P + + + P L +++ G+ L Sbjct: 384 AGCVYGVDLNPMAIELAKVSLWLEAGEPGRPLSFLDAHLKVGNALL 429 >gi|119490856|ref|ZP_01623139.1| type I restriction-modification system, M subunit, putative [Lyngbya sp. PCC 8106] gi|119453674|gb|EAW34833.1| type I restriction-modification system, M subunit, putative [Lyngbya sp. PCC 8106] Length = 1045 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 86/285 (30%), Gaps = 57/285 (20%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S+IYE + + G TP +V +L D + + DP C Sbjct: 337 ISSIYEEFVSK-----KSGTGVHYTPEHIVDFVLDGVLPWDSQEWDIK------ILDPAC 385 Query: 215 GTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 G+G FL A + S K G +++ + V + + L Sbjct: 386 GSGIFLVKAFQRLIYRWEQAHPRTIQPSDLKYLLENNLFGVDVDAQAVRVASFSLYLTML 445 Query: 265 ESDPRRDLSKN-----------IQQGSTLSKDL------FTGKRFHYCLSNPPFGKKW-E 306 + + +N + +D ++ + N P+G+ Sbjct: 446 DKVEPQYYWENEFRFPRLRERQLVAADFFKEDKEGFRSVQDAAKYDLVVGNAPWGRNTVT 505 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + G GP LFL A + GG+ A++ + L Sbjct: 506 PAAKSWAGDVWTITYGNIGP----------LFLPKAAALTKP----GGQVAMMQPALALI 551 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLW 408 + G+ E R L IE IV L LF + Sbjct: 552 FNQVGTA-QEFRARLFSEFKIEEIVNLSALRFGLFKDAISPACII 595 >gi|294673845|ref|YP_003574461.1| hypothetical protein PRU_1135 [Prevotella ruminicola 23] gi|294472602|gb|ADE81991.1| conserved hypothetical protein [Prevotella ruminicola 23] Length = 923 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 60/390 (15%), Positives = 107/390 (27%), Gaps = 90/390 (23%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 F+ TI + L + + ++ + + ++E + E T Sbjct: 272 FAETIEIPQFTDELKQTLLQNASLDFDWSEISPTIFGAVFESTL---NPETRRSGGMHYT 328 Query: 180 PRDVVHLATALLLDPD-----DALFKESPGMIR--------------TLYDPTCGTGGFL 220 + +H L D D + E R T DP CG+G FL Sbjct: 329 SIENIHKVIDPLFLNDLRAELDEILDEKVEKQRVRKLDAYQDKLASLTFLDPACGSGNFL 388 Query: 221 TDAMNHVADCGSHHKIPP-----------------ILVPHGQELEPETHAVCVAGMLI-- 261 T+ + + I +G E+ V + I Sbjct: 389 TETYLSLRRLENEAIRSKYHDQTMIGAFMNPIKVSIHQFYGIEINDFAVTVATTALWISE 448 Query: 262 -----------RRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEK 307 ++ NI +G+ L D Y + NPPF Sbjct: 449 AQMMAETEKIVTFEDNFLPLKSYSNIHEGNALRTDWETVVPKSHLTYIIGNPPF-----V 503 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSSS- 363 + + + FG I + + L+ G R A+V ++S Sbjct: 504 GANIMNDNQRADIRSIFGSKWKNIGEMDYV----TGWYLKATQMMHGTDIRTALVSTNSI 559 Query: 364 -----------PLFNGRAGS--GESEIR---RWLLENDLIEAIVALPTDLFFRTNIATYL 407 PLF R L+ + I+ F TN + Sbjct: 560 SQGEQVANLWKPLFEEGVHIDFAHRTFRWDSEASLKAHVHCVIIG-----FSCTNDKHTM 614 Query: 408 WILSNRKTEERRG-KVQLINATDLWTSIRN 436 I N K + L++A +++ ++ Sbjct: 615 TIYDNAKEHKASNINAYLMDAPNVFVESKS 644 >gi|255034967|ref|YP_003085588.1| N-6 DNA methylase [Dyadobacter fermentans DSM 18053] gi|254947723|gb|ACT92423.1| N-6 DNA methylase [Dyadobacter fermentans DSM 18053] Length = 493 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 25/222 (11%) Query: 171 SEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH-VA 228 + TP +V + D K + DP CG G FL + Sbjct: 11 KKLLGQVYTPFHIVDKILGHCGFYEADLSEK-------RMLDPACGNGRFLVPMAEFIIR 63 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + HG +++ + C + L + ++ N+++ L + + Sbjct: 64 NTPPDRVAERLQQLHGWDVDRKALQQCREN--LDALVAPLGLEIDWNLRKCDALKQ-WRS 120 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +F + NPP+ + + + K+ + +D + F L Sbjct: 121 KDKFDLIIGNPPYIRIQHLPETQRKYIQKH-----YSFCSTGSTDAFIAFFQLATRLLAP 175 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 G ++ +S L +R++ ++ ++ I Sbjct: 176 D----GLCGMITPNSFL----VSESGGPLRKYFYKHQNLKHI 209 >gi|32141309|ref|NP_733709.1| hypothetical protein SCO6627 [Streptomyces coelicolor A3(2)] gi|24413913|emb|CAD55384.1| hypothetical protein [Streptomyces coelicolor A3(2)] Length = 1210 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 95/313 (30%), Gaps = 79/313 (25%) Query: 134 YKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 + +F+ + R + ++Y+ L + TP V Sbjct: 168 GALVHDFTDPLSADGTEGWGTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRT 223 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------P 242 ++P F + DPTCG+G F+ A + G ++ + Sbjct: 224 MNPAVREFGYEE---LKMIDPTCGSGHFVLGAFRRLVRLGGENQPGKDVHQRVRAALDSV 280 Query: 243 HGQELEPETHAVCVAGML--------IRRLESDPRRDLSKNIQQGSTL------------ 282 HG ++ P A+ +L +R L+ + + ++ G +L Sbjct: 281 HGVDINPFAVAIARFRLLVAAMAASGVRTLDEASKYEWPVHLAVGDSLIKSGSQQGSLFG 340 Query: 283 -SKDLFTGK---------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 S D T + R+H + NPP+ +K +A+ +E Sbjct: 341 ESDDDLTDELAEFKYATEDVGEHPEMLRPGRYHVVVGNPPYITVKDKSLNALYRELYPAC 400 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEI 377 G++ +P F + G G + ++S + E Sbjct: 401 AGKYALSVP--------FAQRFFELAKREDAEGSGYGMVGQITANSFMKR--------EF 444 Query: 378 RRWLLENDLIEAI 390 L+E A+ Sbjct: 445 GTKLIEGYFGHAV 457 >gi|195867898|ref|ZP_03079897.1| N-6 DNA Methylase family protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660475|gb|EDX53733.1| N-6 DNA Methylase family protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 543 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 57/389 (14%), Positives = 127/389 (32%), Gaps = 59/389 (15%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS-----TIARLEKA-GLLYKICK 138 E+ + + + N N++S I S N F ++ I LEK L+ + Sbjct: 8 EFQMEDIKTKN-DKNIKSKI-ILSQNEIDKFSRYNIEDYQYDIEILGLEKTWNLICEYIL 65 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 F E + +YE + + + + TP DV + L+ D Sbjct: 66 LFGENENFLNINN---FGEMYEIGLAIRDKHQKKTSGQYYTPDDVAKVMAKWLIKSD--- 119 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 + D CGTG + ++ + + I + + + +C Sbjct: 120 -------GINVCDVGCGTGKLILTYLDLIGYENAR-NIIKKGNLYLYDFDNIALKICKTS 171 Query: 259 MLIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + ++ D+ NI + + + +SNPP+ E ++ + + Sbjct: 172 IALK-----YGIDIMNNINDINCDFLNEKIILPQDSKVISNPPYSIIHEIKEEWDKTQVL 226 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + F+ + + + I+ S + + + S + Sbjct: 227 LETKELYS-----------SFMEKIFLQSKS-------VVIITPFSFISSKKFFS----L 264 Query: 378 RRWL--LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 R+ + N I + +P ++F+ I ++ T R + + + R Sbjct: 265 RKLMCSTGNGFIVSFDNVPGNIFYGRKHG----IFNSNTTNSVRASITFFQKSSNYYGFR 320 Query: 436 NE---GKKRRIINDDQRRQILDIYVSREN 461 K+ + +IL+ Y+S++N Sbjct: 321 LSPLIRFKQTERENLLNNEILESYISKKN 349 >gi|296115678|ref|ZP_06834304.1| putative type II DNA modification enzyme [Gluconacetobacter hansenii ATCC 23769] gi|295977655|gb|EFG84407.1| putative type II DNA modification enzyme [Gluconacetobacter hansenii ATCC 23769] Length = 768 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 17/132 (12%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAM 224 + + TP +V LDP + S G + DP CG G FL A Sbjct: 208 NDRRTSGSYYTPDSLVQSLLDSTLDPVMDRAEASGGAAALLALRVIDPACGGGHFLLAAA 267 Query: 225 NHVADCGSHHKIPPILV------------PHGQELEPETHAVCVAGMLI-RRLESDPRRD 271 +A H P +G + P + + I + P Sbjct: 268 RRMAMRIVRHHAPKGGEYRTILRDVVARCIYGVDCNPMAVELTRMALWIETGIPGRPLCF 327 Query: 272 LSKNIQQGSTLS 283 L+ NI G+ L Sbjct: 328 LAANILCGNALL 339 >gi|145639576|ref|ZP_01795180.1| possible type I restriction enzyme M subunit [Haemophilus influenzae PittII] gi|145271367|gb|EDK11280.1| possible type I restriction enzyme M subunit [Haemophilus influenzae PittII] Length = 253 Score = 54.2 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 26/187 (13%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 LY I + + +++ L E + TP + HL A+ Sbjct: 69 RLYNII------VEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLMAAVT 117 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 L +L K TL +PTCG+G + +A N++ + + ++L+ Sbjct: 118 LSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLDFTA 173 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKD 310 +C M + + + + G+TL + + + + N + KK E Sbjct: 174 ALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLESADS 223 Query: 311 AVEKEHK 317 E E++ Sbjct: 224 YTEAEYQ 230 >gi|307947067|ref|ZP_07662402.1| type II restriction enzyme, methylase subunit [Roseibium sp. TrichSKD4] gi|307770731|gb|EFO29957.1| type II restriction enzyme, methylase subunit [Roseibium sp. TrichSKD4] Length = 1311 Score = 53.8 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 77/298 (25%), Gaps = 56/298 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L E + + A L+S K Y + + + Sbjct: 283 LIFLMVAEDRNLLHPEKAKPEARALYAQGYSLQSLRKQC----YRAATWDKHHDRYEGVK 338 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL-----------LYKICKNFSGIELH 146 + A + LE A L L + + ++ Sbjct: 339 IVFRALTQGQPALALPALGGLFAEDRLPHLETARLRNRAFMEALYRLSWLADKAGMVPVN 398 Query: 147 PDTVPDRVMSNIYEHLIR------------RFGSEVS-------EGAEDFMTPRDVVHLA 187 + + ++YE L+ F SE + + + TP +V Sbjct: 399 WRAMETEELGSVYESLLELQPQLGDDGKTLVFASEAAEQKGNQRKTTGSYYTPDSLVQAL 458 Query: 188 TALLLDPDDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---- 237 LDP + + ++ DP CG+G FL A +A + + Sbjct: 459 LDTALDPVLDKTEGEADDPAKALLKLSVIDPACGSGHFLLAAARRIATRLARIRAEGTPS 518 Query: 238 -----------PILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283 HG + P + + I ++ P I+ G L Sbjct: 519 LADFRHALRDVARCCIHGVDRNPMAVELTKVALWIETVDPGLPLGFFDAQIRCGDALL 576 >gi|293571357|ref|ZP_06682388.1| adenine-specific methyltransferase [Enterococcus faecium E980] gi|291608573|gb|EFF37864.1| adenine-specific methyltransferase [Enterococcus faecium E980] Length = 335 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 48/341 (14%), Positives = 109/341 (31%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E A + + + + P+ + Sbjct: 27 SFLEAYVENAENLIDDYQVRVVDGVPTKETAQRITALYEELKKLSFEPEEWR-----RLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 82 QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 136 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 137 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 179 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278 Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435 +LF + IL + ++ +V L+ L + Sbjct: 279 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 319 >gi|10957433|ref|NP_051667.1| hypothetical protein DR_B0137 [Deinococcus radiodurans R1] gi|6460862|gb|AAF12566.1|AE001826_35 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 609 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 39/172 (22%) Query: 151 PDRVMSNIYEHLIR---------RFG-----SEVSEGAEDFMTPRDVVHLATALLLDP-- 194 + +IYE L+ RF + + TP ++ L LDP Sbjct: 397 DSEELGSIYESLLELVPRIEPGPRFSLTVLPGNERKSTGSYYTPGSLIDLLLDSALDPVI 456 Query: 195 DDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHV----------------ADCGS 232 +DA+ + P + DP CG+G FL A + Sbjct: 457 EDAVRDKLPEDAIAALKGLKVIDPACGSGHFLIAAARRIGARLAELEEETSLPSPRALRK 516 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLS 283 + +G ++ P + + + + P L ++ G++L Sbjct: 517 ATRTVIAHCIYGADINPMAIELAKVALWLESQDAGRPLAFLDHRLRVGNSLL 568 >gi|49476200|ref|YP_034241.1| hypothetical protein BH15450 [Bartonella henselae str. Houston-1] gi|49239008|emb|CAF28308.1| hypothetical protein BH15450 [Bartonella henselae str. Houston-1] Length = 1653 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 88/295 (29%), Gaps = 34/295 (11%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + ++ + LEK Y K + P ++ +Y+ R E Sbjct: 816 DVLDEANLDKESKDLEK---FYASVKLRASGITDPQAKQRLII-ELYDKFFRYAFPRTVE 871 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V + D A F ++ G + DP GTG F+T + Sbjct: 872 KLGIVYTPVEIVDFILRSVNDVLQAEFGQTLGAPGIHIMDPFTGTGTFITRLLQSGLITP 931 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------------LESDPRRD 271 K H E+ + + + LI + +D Sbjct: 932 EEMKHKFCHEIHANEIVLLAYYIAAINIETTYHGLIGGDYVPFEGICLTDTFQLYEQEKD 991 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH--KNGELGRFGPGLP 329 L ++ ++ + G + NPP+ + + D + K R Sbjct: 992 LISDLLVDNSTRRSRQKGLDIRVIVGNPPYSSGQKSENDNAKNIGYPKLDRCIRETYAAQ 1051 Query: 330 KIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 + +G + G V ++ + NG + +G +R+ L Sbjct: 1052 SKASNVNGLYDSYIRAIRWASDRIKDCGVIGFVTNAGFI-NGYSTNG---LRKEL 1102 >gi|328952480|ref|YP_004369814.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] gi|328452804|gb|AEB08633.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] Length = 1094 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 79/267 (29%), Gaps = 47/267 (17%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCG 215 YE + + E + + TP VV + F G + DP CG Sbjct: 303 YETFLAAYDPEKRKVRGVYYTPEPVVSYIVRAIDHVLKEGFSRPWGLADPNTLILDPACG 362 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVC--VAGMLIRR 263 TG FL + + D + G EL +AV G+ ++ Sbjct: 363 TGTFLHSVIALMYDTLCAQGQAGGWRAYVSDSLLPRVFGFELLMAPYAVAHVKLGLALQE 422 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFT----------------------GKRFHYCLSNPPF 301 D + +TL + L + L NPP+ Sbjct: 423 RGYDFPMGRRLGVYLTNTLEEALKKSQVLPLAGFITEESNTAAAIKQDEPIEVILGNPPY 482 Query: 302 GKKWEKDKDAVE---KEHKNGELGRFGPGLPKISDGSML-FLMHLANKLELPPNGGGRAA 357 + D + K++K + PK + FL +L G G A Sbjct: 483 SVQSANKGDWIRSLIKDYKKVDGLPLDEKNPKSLQDDYVKFLRWGQWRL--DRTGQGVLA 540 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLEN 384 ++ + L N +R+ L++ Sbjct: 541 MITNHGYLDNATFRG----MRQAFLKS 563 >gi|307244208|ref|ZP_07526323.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] gi|306492358|gb|EFM64396.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] Length = 116 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 5/92 (5%) Query: 22 LWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80 + + ++ IL F + L ++ + + D++ V Sbjct: 1 MRSKIEANEYKDYILGFIFYKYLSDQEIKFLKENDFDDADIKDLREDDIDILEYVQRNIG 60 Query: 81 YNTSEY----SLSTLGSTNTRNNLESYIASFS 108 Y S + + G +++ +++F+ Sbjct: 61 YFISYENLFSTWISKGRDFDVSDVRDALSAFN 92 >gi|170760713|ref|YP_001788411.1| modification methylase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407702|gb|ACA56113.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 577 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 90/300 (30%), Gaps = 58/300 (19%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + + + + +S Y LI+ + TP+++ + ++ +D Sbjct: 26 EAINNFKYKLSIGKNENISLKYYELIK-----GKKETGVIYTPQEISNYMIENTINKED- 79 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------KIPPI 239 + DP+CG G L ++ + + K Sbjct: 80 ---VINNPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +G +++ + + N ++ L +D+ F + NP Sbjct: 137 NNLYGFDIDTIAIKILTIDLF-----CLTGYYNENNFKKKDFLMEDI--NNNFDIYIGNP 189 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 P+ +V+KE+ ++G D S F ++ N N + + Sbjct: 190 PY-----VGHKSVDKEYSVLLKEKYGYIYKDKGDISYCFFINALN----YSNINSKITFI 240 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNR 413 S + + +R++L EN I I+ F+ I + + Sbjct: 241 TSRYFMESKSGH----NLRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291 >gi|67920386|ref|ZP_00513906.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501] gi|67857870|gb|EAM53109.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501] Length = 179 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418 + LF + IR+ L+E+ ++ ++++P+ +F ++T + I + Sbjct: 1 MPDGVLF--GSSKAHKTIRKTLVEDHKLDGVISMPSGVFKPYAGVSTAILIFTKT-GVGG 57 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 V + + + KR+ I + I+ + RE Sbjct: 58 TDYVWFYD---MEADGFSLDDKRQKIEKNDIPDIIKCWKERE 96 >gi|163868246|ref|YP_001609455.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017902|emb|CAK01460.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1643 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 92/319 (28%), Gaps = 37/319 (11%) Query: 43 RLECALEPTRSAV--------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 RL+ L +S +E S ++ +A + + +L Sbjct: 753 RLKSILADKKSEAYRAFHAFHKELKNGLNDSIEQEDALEMLAQHL---VTRPIFESLF-D 808 Query: 95 NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 ++ I+ + + + + LEK Y+ K+ + + + + Sbjct: 809 GNEFVSKNAISQAMEKILSELDKMNIKDEAKDLEK---FYQSVKDDTEEIIETRAKQNLI 865 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213 + +YE + + ++ TP ++V + D + F +S ++ DP Sbjct: 866 I-KLYEDFFTKAFKKTTDKLGIVYTPIEIVDFILHSVNDVLEQEFGQSLSSRGVSILDPF 924 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-L 272 GTG F+T + + E+ + + + Sbjct: 925 TGTGTFITRLLQSGLIKPEDMEYKFRNEIKANEIVLLAYYIAAINIESTYHSLMKGDYIP 984 Query: 273 SKNIQQGSTLS----KDLFTGKRF--------------HYCLSNPPFGKKWEKDKDAVEK 314 + I T KD FT F + NPP+ + D Sbjct: 985 FEGICLTDTFLMLEEKDFFTRYMFENSERCKKQQEADIQVIVGNPPYSVGQKNANDNNPN 1044 Query: 315 -EHKNGELGRFGPGLPKIS 332 + + + + S Sbjct: 1045 VRYDTLNDSIYKQYITRSS 1063 >gi|307293025|ref|ZP_07572871.1| putative type I restriction-modification system methyltransferase subunit [Sphingobium chlorophenolicum L-1] gi|306881091|gb|EFN12307.1| putative type I restriction-modification system methyltransferase subunit [Sphingobium chlorophenolicum L-1] Length = 269 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 48/171 (28%), Gaps = 12/171 (7%) Query: 86 YSLSTLGSTNTRNNLESYIASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGI 143 + L L S + S S + E D R ++ + F+ I Sbjct: 22 HDLHRLFSDCMEASAISISNSMDLRNREAREKRYLDIVGQYER----DIVELFPQVFAEI 77 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-LLLDPDDALFKES 202 + + P + +Y +L S F TP + + L P + Sbjct: 78 MMALEAEPRDALGTVYNNL-----ELSSADKGQFFTPWPICQMMAEATLGGPKLIQDLIA 132 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 +P CG G + + G +++ + + A Sbjct: 133 CKGFVRAMEPACGAGATVIALAQTMRAQGINYQRHLHVTAVDIDARVAHMA 183 >gi|37525131|ref|NP_928475.1| hypothetical protein plu1163 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784557|emb|CAE13457.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 240 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 57/162 (35%), Gaps = 20/162 (12%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + E A ++ ++ + + + P + ++ L + ++ + F TP + Sbjct: 70 KPEDASRFSQLLEH---VMMGLEFEPHDFLGGVFMQL-----NLGNKHLKQFFTPWPISL 121 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 + + L + + P TLY+P CG G + A + G + + Sbjct: 122 VMAKMQLSDVEQRLTKQP--FFTLYEPACGAGCMVIAAAEVLKMSGYN--PAQHMWVSCV 177 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 +++ ++ + + + + + G L+ + Sbjct: 178 DIDVVAASMAYIQLSLLGIPGE--------VVIGDALTNERH 211 >gi|265763823|ref|ZP_06092391.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256431|gb|EEZ27777.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 248 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 19/146 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L + F+ + + D P + ++ + + F TP V L Sbjct: 54 DKTELDLFSQAFAALVMQMDRQPLVDPFGDYFQEFL------SNAQNGQFFTPFGVCELM 107 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L+ P + + R + DP CG+G L A + L G ++ Sbjct: 108 NQLITAPK--VNDQPKQGDRRVLDPACGSGRLLLSA----------AQKDRALTFVGIDI 155 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLS 273 + + + + L + + Sbjct: 156 SYTCCLMTIINLCLNSLNGEVLHMNA 181 >gi|213865304|ref|ZP_03387423.1| hypothetical protein SentesT_36419 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 371 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E A + ++ S + + + P + IY + + TP V + Sbjct: 204 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 255 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + L T+ DP G G + + + G + +V + ++ Sbjct: 256 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 313 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +P +C + + + + S ++ ++ +F R+H Sbjct: 314 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 359 >gi|213649083|ref|ZP_03379136.1| hypothetical protein SentesTy_18458 [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 359 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E A + ++ S + + + P + IY + + TP V + Sbjct: 192 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 243 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + L T+ DP G G + + + G + +V + ++ Sbjct: 244 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 301 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +P +C + + + + S ++ ++ +F R+H Sbjct: 302 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 347 >gi|213620682|ref|ZP_03373465.1| hypothetical protein SentesTyp_25602 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 469 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E A + ++ S + + + P + IY + + TP V + Sbjct: 302 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 353 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + L T+ DP G G + + + G + +V + ++ Sbjct: 354 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 411 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +P +C + + + + S ++ ++ +F R+H Sbjct: 412 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 457 >gi|16763059|ref|NP_458676.1| hypothetical protein STY4592 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144542|ref|NP_807884.1| hypothetical protein t4286 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213427259|ref|ZP_03360009.1| hypothetical protein SentesTyphi_17642 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224586142|ref|YP_002639941.1| hypothetical protein SPC_4447 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|25512608|pir||AE1033 hypothetical protein STY4592 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505366|emb|CAD09366.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29140180|gb|AAO71744.1| hypothetical protein t4286 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|224470670|gb|ACN48500.1| hypothetical protein SPC_4447 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 649 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E A + ++ S + + + P + IY + + TP V + Sbjct: 482 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 533 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + L T+ DP G G + + + G + +V + ++ Sbjct: 534 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 591 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 +P +C + + + + S ++ ++ +F R+H Sbjct: 592 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 637 >gi|229892402|gb|ACQ89838.1| helicase [Enterococcus faecalis] Length = 2727 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 87/317 (27%), Gaps = 64/317 (20%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYE 160 F N A+ D + + +A E+ +L S + +Y Sbjct: 1155 EKFKANMAAVNFLHDLEIENRLATPEEQKILAGYVGWGGLSMAFDENNAAWANEFKELYV 1214 Query: 161 HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L + + F TP V+ L S G + +P+CGTG F Sbjct: 1215 TLSPEEYRAAKESTLTAFYTPPVVIKAMYEAL-----DRLGFSEG---NILEPSCGTGNF 1266 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + HG E++ T + + NI Sbjct: 1267 FGLLPDSM----------ANSKLHGVEIDSLTGRIAK------------QLYQKANIAIE 1304 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 K F L N PFG R+ +I D Sbjct: 1305 -GFEKTKLPDDHFDVVLGNVPFG-------------DFRVNDSRYNAQNFRIHD------ 1344 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 K GG + S + E+R+++ + + + LP + F Sbjct: 1345 -FFFAKALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFR 1398 Query: 399 --FRTNIATYLWILSNR 413 T + + + IL R Sbjct: 1399 ANAGTEVTSDILILQKR 1415 >gi|330814767|ref|YP_004362942.1| hypothetical protein bgla_4p3670 [Burkholderia gladioli BSR3] gi|327374759|gb|AEA66110.1| hypothetical protein bgla_4p3670 [Burkholderia gladioli BSR3] Length = 223 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 20/156 (12%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 + +L + F + + V+ ++Y L S A F TP V + Sbjct: 31 SEMLANLMLAFLDLSKMGEFAD--VLGSLYMRL-----ELGSSRAGQFFTPYHVSRMMGQ 83 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + T+ DP CG GG + + G H+ ++ Sbjct: 84 I---QVGDGTDMRAREFVTVSDPACGAGGMIIAFADAARSVGLDHRACMHATCIDIDIRC 140 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 A +L D+ + G+ L+ D Sbjct: 141 VHMAYVQLSLL----------DIPAVVIHGNALASD 166 >gi|301058390|ref|ZP_07199411.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300447446|gb|EFK11190.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 848 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 51/392 (13%), Positives = 118/392 (30%), Gaps = 65/392 (16%) Query: 42 RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101 ++L+ L+ T + Y N ++ + + F + + ++ Sbjct: 160 KKLDRLLKETLLSGVNAYREVNSGNSPNDTELFRLVFRFLAAKIFRDKKHPGDWSSSDPR 219 Query: 102 SYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + I N + + + I + + + + + ++ +Y Sbjct: 220 TVID----NVQKFYGLDKISSGAIIDEPQTQQATWDYL----RNAFNFQNLSEEDLAFVY 271 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E+ + + + TP V L L D ++ + R + +P G G F Sbjct: 272 ENTL--VTKKARKEHGIHATPSVVAELIVDRLPFEDLSINE------RFVLEPCAGHGVF 323 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQE----LEPETHA--VCVAGMLIRRLESDPRRDLS 273 L A+ + + + ++ +E ++ A VC + + + + Sbjct: 324 LVAALRRLRELLPSSWTAQERHAYLKKRLKAIELDSFAGEVCRLSLTLADYPNPDGWE-- 381 Query: 274 KNIQQGSTLSKDLFTG--KRFHYCLSNPPF----GKKWEKDKDAVEKEHKNGELGRFGPG 327 I Q D+ + L NPPF ++ ++ + ++ HK E+ R Sbjct: 382 --IVQTDVFGTDVLENSLPQSRIVLCNPPFEDFSEQERKRYESRIQSVHKPYEVLRRVIA 439 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL- 386 P + L G + + LL Sbjct: 440 NPPA----------------------------MLGFVLPKSAIIGGRYDSLQNLLGKCYT 471 Query: 387 -IEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 +E + +LP +F ++ T L + Sbjct: 472 CVETV-SLPDRIFAFSDQETMLLLAYKADPSR 502 >gi|12837533|gb|AAK08957.1|AF306668_2 restriction endonuclease BseMII [Geobacillus stearothermophilus] Length = 922 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 62/405 (15%), Positives = 126/405 (31%), Gaps = 48/405 (11%) Query: 88 LSTLGSTNTRNNLE---SYIASFSDNAK---------AIFEDFDFSSTI-ARLEKAGLLY 134 ++ L + N + I + K I DF + +L + + Sbjct: 232 MNKLLFAHILKNFREEAAIIDKIDLDTKPAEAVNIITDISSKCDFWNIFAPQLGEEHIPS 291 Query: 135 KICKNFSGIELHPDTVPDRVMSN--IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + + + + + I E L + A F TP+ + L AL + Sbjct: 292 SVWEKIVHYNIFLTDLKLESVGQDLIQEILQSTIYRTHRKLAGQFTTPKKLADLLVALTI 351 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELE 248 +YDP CGTG A + + G +K L+ Sbjct: 352 KNKRGN----------VYDPCCGTGTIARAAFDLKVESGISYKEALQTTWASDKFSFPLQ 401 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFG 302 T A+ + + + ++ LS + + + +SN PF Sbjct: 402 MATLALTNPKNIGEVINIFKKDISDLKAKEDIKLSNPVDGSEIIKQLPQMSSIVSNLPFV 461 Query: 303 KK--WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 ++ +K ++ K N G G + + + L GR I++ Sbjct: 462 RQEVIKKLNPSIIKNINNKIKKALGKGYQLKAKSDLYAYLPFV--LWDLLKDDGRLGIII 519 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNIATYLWILSNRKTEERR 419 S+S L + +R++ IEAIV F ++ T + IL+ + Sbjct: 520 SNSWLSTEWGVEFKKALRKFF----HIEAIVTSGKGKWFNNADVVTNILILNKINPKADS 575 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 L + ++ + + + + I +++ K+ Sbjct: 576 ----LEGKEISFVTLTEDIINKEYNDKNLINNIARSIRTKKKDKY 616 >gi|331017717|gb|EGH97773.1| Type I restriction enzyme (modification subunit) [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 571 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 22/193 (11%) Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 +++ RF + G + + H+ + E GR +++ S LF Sbjct: 216 KYKKEDLDRDSYQRFDHA---SAKGPLAAVFHILAQTE------GRVILLVPDSLLFKPG 266 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 A E +R +LL +EA+V+LPT A + IL+ E +V + Sbjct: 267 A---ERSLREYLLTRQRVEAVVSLPTGAAQGLKGACSILILNTVLASE---QVLFVK--- 317 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489 + NE + RQ+ + R G+FS ++ + ++ Sbjct: 318 ----VTNELLTNADTRTLKFRQVGALIRDRGEGRFSSLVKVNDLLTDDFNMEAARHVTGR 373 Query: 490 LDKTGLARLEADI 502 + + E Sbjct: 374 VTIHRQVQTEFTT 386 >gi|316932251|ref|YP_004107233.1| hypothetical protein Rpdx1_0868 [Rhodopseudomonas palustris DX-1] gi|315599965|gb|ADU42500.1| hypothetical protein Rpdx1_0868 [Rhodopseudomonas palustris DX-1] Length = 1487 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 55/241 (22%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR------------RFGSEVS-------E 172 L + + ++ + + ++YE L+ F SE + + Sbjct: 385 RLSWLSDKAGIVPVNWRAMETEELGSVYESLLELQPQLGEDGKTLHFASEAAEQKGNQRK 444 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMNH 226 + TP +V LDP + ++ DP CG+G FL A Sbjct: 445 ITGSYYTPDSLVQALLDTALDPVLDKTEAEADDPEQALLELSVIDPACGSGHFLLAAARR 504 Query: 227 VADCGSHHKIPPILV---------------PHGQELEPETHAVCVAGMLIRRLESD-PRR 270 +A + + HG + P + + I ++ P Sbjct: 505 IATRLARIRAEGTPSLADFRHALRDVARSCLHGVDRNPMAVELTKVALWIETVDPGLPLG 564 Query: 271 DLSKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 I+ G L +D + P ++ ++K + Sbjct: 565 FFDAQIRCGDALLGVFDLKVLEDGIPDAAYK------PLTGGDKEVARHYANKNKREKAE 618 Query: 323 R 323 R Sbjct: 619 R 619 >gi|1171043|sp|P43423|MTC1_BACST RecName: Full=Modification methylase BseCI; Short=M.BseCI; AltName: Full=Adenine-specific methyltransferase BseCI gi|619639|emb|CAA56041.1| methyltransferase [Geobacillus stearothermophilus] Length = 579 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 82/254 (32%), Gaps = 30/254 (11%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP + + +L FK + + DP CG G L Sbjct: 14 KATGAHFTPDKLAEVIAKRIL----DYFKGEKNRVIRVLDPACGDGELLLAINKVAQSMN 69 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTL-SKDLFT 288 + G + + + + + ++ +D + + +G ++ Sbjct: 70 IQLE------LIGVDFDIDAINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNIEE 123 Query: 289 GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + ++NPP+ + + A + K GR FL+ + +L+ Sbjct: 124 LEPVDIIIANPPYVRTQILGAEKAQKLREKFNLKGRVDLYQ--------AFLVAMTQQLK 175 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G ++ S+ L GS R++L+ N I I+ L FF + + Sbjct: 176 S----NGIIGVITSNRYLTTKGGGS----TRKFLVSNFNILEIMDLGDSKFFEAAVLPAI 227 Query: 408 WILSNRKTEERRGK 421 + + E ++ Sbjct: 228 FFGEKKNKEYQKEN 241 >gi|295110781|emb|CBL24734.1| DNA methylase [Ruminococcus obeum A2-162] Length = 2686 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 71/274 (25%), Gaps = 61/274 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F T VV + +P+CG G F+ Sbjct: 1138 EEYSAARASTLNAFYTSPTVVKAMYE--------ALGNMGLKQGNILEPSCGVGNFMGLL 1189 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++ +G EL+P + + + KN Sbjct: 1190 PESMSAAN----------MYGVELDPVSGQIAK-------------QLYQKNRIAVQGFE 1226 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + F + N PFG D+ + Sbjct: 1227 ETSYPDSFFDCVIGNVPFGAYQVSDRKYDRYHFMIHDY--------------------FI 1266 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A+V SS + E+R++ + + LP + F Sbjct: 1267 AKSLDMVRPGGVVAVVTSSGTMDKQNP-----EVRQYFANRADLLGAIRLPNNAFQRNAN 1321 Query: 401 TNIATYLWILSNRKTEERR--GKVQLINATDLWT 432 T++ + R VQL + +T Sbjct: 1322 TSVVADILFFQKRDRAAITEPDWVQLKTTPEGYT 1355 >gi|212640060|ref|YP_002316580.1| adenine-specific DNA methyltransferase BseCI [Anoxybacillus flavithermus WK1] gi|212561540|gb|ACJ34595.1| Adenine-specific DNA methyltransferase BseCI [Anoxybacillus flavithermus WK1] Length = 577 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 76/254 (29%), Gaps = 30/254 (11%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP + + +L FK + + DP CG G L Sbjct: 14 KATGAHFTPDKLAEVIAKRIL----NYFKGEEKRVIRVLDPACGDGELLLAINKVAQSMN 69 Query: 232 SHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 ++ + + + + + + N +T Sbjct: 70 IQLELIGVDSDID-AINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNT-----EE 123 Query: 289 GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + ++NPP+ + + A + K GR FL+ + +L+ Sbjct: 124 LEPADIIIANPPYVRTQILGAEKAQQLRKKFNLKGRVDLYQ--------AFLVAMTQQLK 175 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G ++ S+ L S IR++L+ N I I+ L FF + + Sbjct: 176 S----NGIMGVITSNRYLTTKGGES----IRKFLVLNFNILEIMDLGDTKFFDAAVLPAI 227 Query: 408 WILSNRKTEERRGK 421 + + E ++ Sbjct: 228 FFGEKKSKENQKEN 241 >gi|257888134|ref|ZP_05667787.1| adenine-specific methyltransferase [Enterococcus faecium 1,141,733] gi|257896975|ref|ZP_05676628.1| adenine-specific methyltransferase [Enterococcus faecium Com12] gi|257824188|gb|EEV51120.1| adenine-specific methyltransferase [Enterococcus faecium 1,141,733] gi|257833540|gb|EEV59961.1| adenine-specific methyltransferase [Enterococcus faecium Com12] Length = 339 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 108/341 (31%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E + + + + P+ + Sbjct: 31 SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 85 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 86 QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 140 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 141 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 183 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 184 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 230 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 231 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 282 Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435 +LF + IL + ++ +V L+ L + Sbjct: 283 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 323 >gi|119384265|ref|YP_915321.1| hypothetical protein Pden_1525 [Paracoccus denitrificans PD1222] gi|119374032|gb|ABL69625.1| hypothetical protein Pden_1525 [Paracoccus denitrificans PD1222] Length = 1459 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 77/298 (25%), Gaps = 56/298 (18%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L E + + A L+S K Y + + + Sbjct: 283 LIFLMVAEDRNLLHPEKAKPEARALYAQGYSLQSLRKQC----YRAATWDKHHDRYEGVK 338 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL--------LYKICKNFSGIELHPDT 149 + A + LE A L LY++ + P Sbjct: 339 IVFRALTHGQPALALPALGGLFAEDRLPHLETARLRNRAFMEALYRLSWLADKTGMVPVN 398 Query: 150 V---PDRVMSNIYEHLIR------------RFGSEVS-------EGAEDFMTPRDVVHLA 187 + ++YE L+ F SE + + + TP +V Sbjct: 399 WRAMETEELGSVYESLLELQPQLCDDGKTLVFASEAAEQKGNQRKTTGSYYTPDSLVQAL 458 Query: 188 TALLLDPDDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHV-------------- 227 LDP + + ++ DP CG+G FL A + Sbjct: 459 LDTALDPVLDKTEAEADDPAKALLKLSVIDPACGSGHFLLAAARRIATRLARIREGGTPG 518 Query: 228 ADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283 + H + HG + P + + I ++ P I+ G L Sbjct: 519 LEHFRHALRDVARCCIHGVDRNPMAVELTKVALWIETVDPGLPLGFFDAQIRCGDALL 576 >gi|126697506|gb|ABO26710.1| TspGWI restriction endonuclease [Thermus sp. GW] Length = 1097 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 11/108 (10%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-------IRTL 209 YE + + E+ + + TP VV L+ D L + G T+ Sbjct: 296 YFYEDFLEAYDPELRKDMGVYYTPVPVVRAMVQLV----DDLLRTKMGKPLGLAEEGVTV 351 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 DP GTG FL ++ P + + E+ +A+ V Sbjct: 352 IDPAVGTGTFLLAVLDQALTNAEGRFGPGMRSHYATEVAHRLYALEVM 399 >gi|284097800|ref|ZP_06385789.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3] gi|283830700|gb|EFC34821.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3] Length = 720 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 22/206 (10%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 LL + + + +Y L++ + F T L T L Sbjct: 69 LLETLIEAVLDCAPRIRGLQLDHAGPLYHGLLQ-----TARYDGSFYTSTAAAVLLTELA 123 Query: 192 LDPD----DALFKESPGMIR-TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 + PD + ++ +I + DP CGTG L A + + G E Sbjct: 124 MPPDWPVVKDNWADAERLINLRVCDPACGTGTLLMAAARTIEERHR--------AFCGDE 175 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + T + + ++ L+ + TLS + + L + G Sbjct: 176 ADLPTLHLGLIENVLHGLDINRHAIHLA--ASMLTLSAPKIDYNKMN--LYSMQHGVNTN 231 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKIS 332 D A + + G +P S Sbjct: 232 GDVRAGSLDILVKDAGYLPGLVPDTS 257 >gi|315225841|ref|ZP_07867629.1| N-6 DNA methylase superfamily protein [Parascardovia denticolens DSM 10105] gi|315119973|gb|EFT83105.1| N-6 DNA methylase superfamily protein [Parascardovia denticolens DSM 10105] Length = 502 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 41/216 (18%) Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287 + + +G +L+P + A M+ +D S NI G +L + + Sbjct: 15 EQRDEIRTWAHHNLYGVDLDPINVKLSRALMI-------GAKDGSTNIVLGDSLREQKWG 67 Query: 288 ------------TGKRFHYCLSNPPFGKKWE------KDKDAVEKEHKNGELGRFGPGLP 329 + L+NPPFG+K + K +H NG Sbjct: 68 EFPMFPPVIGSEADGSYDVVLTNPPFGEKLKIRTTDAKRAKYTICKHTNGGANSEQYADT 127 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 ++ ++F+ L GGR IVL + F+ R+W+ ++ + Sbjct: 128 ELG---LVFMERAYRLLAE----GGRLGIVLPETYFFSTSYRW----FRQWVDQHFDVIG 176 Query: 390 IVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424 ++ +P + F T ++++ + +GKV L Sbjct: 177 VMNVPMEAFQGFCRAKTNFYVMTKK---TTKGKVIL 209 >gi|299144533|ref|ZP_07037612.1| putative site-specific DNA-methyltransferase restriction-modification protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517621|gb|EFI41361.1| putative site-specific DNA-methyltransferase restriction-modification protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 479 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 39/300 (13%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +++ + TP + V + + + K T+ + +CG G L + Sbjct: 1 MKKTNEKKIANKCQIFTPTNYVKELLDSVGYHKNIVNK-------TILENSCGDGNILVE 53 Query: 223 AMNH-------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 +N + K G E++ C+ + + ++ + +D+ Sbjct: 54 IVNRYIEEAIELKFSNKKIKKGLENNIFGFEIDKNQFEKCICNLNLL-VKKNGIQDVEWK 112 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPF---GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 I L + +F + + NPP+ ++++ ++ +++ G+F Sbjct: 113 IYNEDYLKSE--VNIQFDFIVGNPPYITYSNLSQEERTFIKDKYETCRQGKF-------- 162 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIV 391 D F+ H L G+ + ++ SS + ++++E D + Sbjct: 163 DYCYAFIEHSIKSLSSE----GKMSYLIPSSIFKTVFGNKLREFMVQYIVEIKDYTK--- 215 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 +F + + + I+ + E+ + + N + L+ + KK N+ + Sbjct: 216 ---EKIFDNALVKSAIIIVDKKDCSEKIKYINMSNDSGLYICKKTIRKKWVFSNEFNIGK 272 >gi|15645293|ref|NP_207463.1| hypothetical protein HP0669 [Helicobacter pylori 26695] gi|2313798|gb|AAD07737.1| predicted coding region HP0669 [Helicobacter pylori 26695] Length = 933 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 83/314 (26%), Gaps = 48/314 (15%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ IA D L+ LY+ K + ++ Sbjct: 127 GDNIKNPIAKALDKMVEKLSTLGLEGETKDLKN---LYESVKT-EALHAKSQKSQQELIK 182 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 183 NLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTG 242 Query: 216 TGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ + + K ++ ++ + + + D + Sbjct: 243 TGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDGSLNNF 302 Query: 274 KNIQQGSTLS-----------------------KDLFTGKRFHYCLSNPPF--------- 301 KNI +L KD + + NPP+ Sbjct: 303 KNIALTDSLDYLEEKTNKGVLPLYEDLKENKGIKDTLANQNIRVIIGNPPYSAGAKSQND 362 Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 K + V +++ R + + L+ G Sbjct: 363 NNQNLSHPKLEKLVYEKYGKNSTSRSVGKTTRDT------LIQSIRMASDVVKDRGVIGF 416 Query: 359 VLSSSPLFNGRAGS 372 V++ + + A Sbjct: 417 VVNGGFIDSKSADG 430 >gi|323650444|gb|ADX97298.1| M.ClaI [Caryophanon latum] Length = 582 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 102/344 (29%), Gaps = 38/344 (11%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + T +++ + + L + F + L DP+CG G L A ++ Sbjct: 6 NKKEDGIHYTAKELSYFMASRLKEASKKFFTAKNSEV-QLLDPSCGDGELLKAAAKIFSE 64 Query: 230 CG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + I QE + R E D L + + Sbjct: 65 DNIKLIGVDTDEYAINAAQQYFTQEDNVSLFINDYLNLFAREEEQDLFNLLPN---EPDS 121 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 + K L+NPP+ + D + L D +FL+ Sbjct: 122 FFIEDGYLKPVDLILANPPYVRTQVMGADKSQILADK-------FNLKGKIDLYHVFLVA 174 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L+ G ++ S+ L +G +IR +L N I ++ L F Sbjct: 175 MTKHLKD----NGIICVITSNRYLTT----AGGKDIRSFLDANYEILEVIDLGDTKLFDA 226 Query: 402 NIATYLWILSNRKTEER--RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 + ++I + E KV ++ K+ ++ I +I + Sbjct: 227 AVLPAIFIGRKKSPSENIKNDKV---KCYRIYEET-----KKTETVIEKCESIYEILSKK 278 Query: 460 ENGKFSRMLDYRTFGYRRIKVLR-PLRMSFILDKTGLARLEADI 502 +G + +KV + P + + +E Sbjct: 279 TSGIYEANKKNYKVMSGILKVPQDPKELWVMASNEEKEWVEQIK 322 >gi|60681789|ref|YP_211933.1| putative type I restriction modification system-like protein [Bacteroides fragilis NCTC 9343] gi|60493223|emb|CAH08005.1| putative type I restriction modification system related protein [Bacteroides fragilis NCTC 9343] Length = 248 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 19/146 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 L + F+ + + D P + ++ + + F TP V L Sbjct: 54 DKTELDLFSQAFAALVMQMDRQPLVDPFGDYFQEFL------SNAQNGQFFTPFGVCELM 107 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L+ P + + R + DP CG+G L A + L G ++ Sbjct: 108 NQLITAPK--VSDQPKQGDRRVLDPACGSGRLLLSA----------AQKDRALTFVGIDI 155 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLS 273 + + + + L + + Sbjct: 156 SYTCCLMTIINLCLNSLNGEVLHMNA 181 >gi|302391314|ref|YP_003827134.1| Eco57I restriction endonuclease [Acetohalobium arabaticum DSM 5501] gi|302203391|gb|ADL12069.1| Eco57I restriction endonuclease [Acetohalobium arabaticum DSM 5501] Length = 1124 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 58/501 (11%), Positives = 126/501 (25%), Gaps = 132/501 (26%) Query: 43 RLECALEPTRSAVRE--------KYLAFGGSNIDLESFVKVAG-YSFYNTSEYS-----L 88 E L + + L + I ++ + YSF + + Sbjct: 243 YEEDLLLDKAQKFLDRIIFICFCEDLGLLPAEILHKAIDRGTDSYSFSEVTVWQEIKGVF 302 Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 + + + ++N+ +Y F + L + + S + + Sbjct: 303 RAIDTGSEQHNINAYNGGL----------FKPDEVLDSLVIKNDFFTVIDEISAYDFDSE 352 Query: 149 TVPDRVMSNIYEHLIRRF--------------GSEVSEGAEDFMTPRDVVHLATALLLDP 194 + + +++E I + + TP + + Sbjct: 353 LDVNI-LGHVFEQSISDIEEIKADIQNDDYDRQESKRKKDGIYYTPEYITKYIVENSVGK 411 Query: 195 DDALFKESPGMIR----------------------------------TLYDPTCGTGGFL 220 + G + DP CG+G FL Sbjct: 412 YLEDIRRELGENELPDIEEADTPQLEGKYKKKHLEFYHEYEERLKEVKVLDPACGSGAFL 471 Query: 221 TDAMNHVADCGS---------------------HHKIPPILVPHGQELEPETHAVCVAGM 259 A + + HK +G ++ + + + Sbjct: 472 NQAFDFLLKEYQWIYEQIDRLQEGQRSIFGLESLHKDILKNNIYGVDINESSVEITKLSL 531 Query: 260 LIRRLESD-PRRDLSKNIQQGSTL-------------SKDLFT----GKRFHYCLSNPPF 301 ++ + P +L NI+ G++L +D F F + NPP+ Sbjct: 532 WLKTANKNQPLTNLDDNIKCGNSLIDDPEVAGEKAFDWEDEFPEIMDDGGFDVVVGNPPY 591 Query: 302 GK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 + + K K++ G +D F L+ Sbjct: 592 VRHEQIKWMKPYLKDNYEVYNG--------TADLYCYFFERGIELLDEDGYFSFIV---- 639 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 S F E +R +LL + E I ++F + + I+ K + Sbjct: 640 --SNKFTRAKYGKE--LREYLLNYQIEEYIDYTDENVFRDATVDPCVIII---KKSVNQD 692 Query: 421 KVQLINATDLWTSIRNEGKKR 441 + + R+ Sbjct: 693 DYLINYNKNHVVPRRSLSVNN 713 >gi|167554092|ref|ZP_02347833.1| RemS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321627|gb|EDZ09466.1| RemS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 277 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 21/157 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +A + + + F + + + I+ L + TP V L Sbjct: 99 EASDIANMQEMFCLMVSALEAKFHDFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMA 153 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--E 246 +L+ + I T+ DP CG G L + + I P + G + Sbjct: 154 RMLMPGVQDTVRRE--GIATVSDPACGAAGMLIAYAECLLE----ADINPSMHMFGSCID 207 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++P + + + + + + G+TL+ Sbjct: 208 IDPVAADMAFIQLSLLGI--------AAEVVTGNTLT 236 >gi|6165642|gb|AAF04626.1| DNA methyltransferase [Geobacillus stearothermophilus] Length = 579 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 81/254 (31%), Gaps = 30/254 (11%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP + + +L FK + + DP CG G L Sbjct: 14 KATGAHFTPDKLAEVIAKRIL----DYFKGEKNRVIRVLDPACGDGELLLAINKVAQSMN 69 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTL-SKDLFT 288 + G + + + + + ++ +D + + +G ++ Sbjct: 70 IQLE------LIGVDFDIDAINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNIEE 123 Query: 289 GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + ++NPP+ + + A + K GR FL+ + +L+ Sbjct: 124 LEPVDIIIANPPYVRTQILGAEKAQKLREKFNLKGRVDLYQ--------AFLVAMTQQLK 175 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G ++ S+ L S R++L+ N I I+ L FF + + Sbjct: 176 S----NGIIGVITSNRYLTTKGGES----TRKFLVSNFNILEIMDLGDTKFFEAAVLPAI 227 Query: 408 WILSNRKTEERRGK 421 + + E ++ Sbjct: 228 FFGEKKNKEYQKEN 241 >gi|262197875|ref|YP_003269084.1| hypothetical protein Hoch_4701 [Haliangium ochraceum DSM 14365] gi|262081222|gb|ACY17191.1| hypothetical protein Hoch_4701 [Haliangium ochraceum DSM 14365] Length = 795 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 58/223 (26%), Gaps = 52/223 (23%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-RRFGSEVS------------EGAED 176 A LY +P + +YEH + R+ + + Sbjct: 112 ADRLYA-----PTHARRLAAMPPEDLGRLYEHALDRKLSLSGNGRLALETSPATHRSSGM 166 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + TP DVV + P A + DP CG+G FL ++ + + Sbjct: 167 YYTPPDVVDALIHSSVAPLFAGQPLKQAAKVKILDPACGSGSFLVGVYRYLLGWYRNAYL 226 Query: 237 PP----------------------------ILVPHGQELEPETHAVCVAGMLIRRLESDP 268 HG +L+P A+ + + LE D Sbjct: 227 RAGGDALKAHLTRSGVGTWTLVAPERIRILTQHLHGVDLDPHAVALARRALYLEALEGDS 286 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + + C N G + +D Sbjct: 287 VEAQEGR------FENPTWPALDHNLCCGNTLVGPEVPEDPTP 323 >gi|254500027|ref|ZP_05112180.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11] gi|222441494|gb|EEE48171.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11] Length = 1702 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 67/260 (25%), Gaps = 58/260 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S TP +V + + +P GTG F Sbjct: 160 DYASLARCTQYAHFTPEFIVRAMWK--------GLERLGWRGGRVLEPGIGTGLFPALMP 211 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + G EL+P T + I +G Sbjct: 212 EAFRE---------TSFVTGVELDPVTSRIAR------------LLQPVSRIVEGDFART 250 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 DL F + NPPF + + A F+ + Sbjct: 251 DL--PAHFDLVIGNPPFSDRTVRSDRAYRSMGLRLHDY---------------FIARSID 293 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 L+ G AA V SS + A R + + + A + LP F T Sbjct: 294 LLKP----GALAAFVTSSGTMDKADAT-----AREHIARSADLIAAIRLPEGSFRQDAGT 344 Query: 402 NIATYLWILSNRKTEERRGK 421 ++ + RK E G+ Sbjct: 345 DVVVDILFFRKRKPGEPEGE 364 >gi|127418|sp|P22772|MTB3_BACAR RecName: Full=Modification methylase BanIII; Short=M.BanIII; AltName: Full=Adenine-specific methyltransferase BanIII Length = 580 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 30/261 (11%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 I E LI++ + TP D+ + L++ IR L DP+CG Sbjct: 4 TIEEMLIKQ------KETGAHYTPTDLGDIIAKRLINELKKSGISGTKKIRGL-DPSCGD 56 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESDPRRDLS 273 G L + + + ++ + + + DL Sbjct: 57 GELLLSLNRIAKFNNIDNIELIGIDEDKEAIKEADFRLNEMGINDAKLTAGDFLDMVDLE 116 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKIS 332 N+ DL + ++NPP+ + D +K K GR Sbjct: 117 GNLSLFD---DDLSKIEPVDLIIANPPYVRTQVLGADRAQKLAKLFNLKGRVDLYH---- 169 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+ + +L+ GG ++ S+ L N SGES IR++L EN I I+ Sbjct: 170 ----AFLVAMTLQLKP----GGLIGVITSNKYLANS---SGES-IRQFLAENYDIIEIMD 217 Query: 393 LPTDLFFRTNIATYLWILSNR 413 L F + ++ + Sbjct: 218 LGDTKLFSAAVLQAIFFGRKK 238 >gi|331746792|ref|YP_004422829.1| hypothetical protein TERMP_02214 [Thermococcus barophilus MP] gi|315185003|gb|ADT85187.1| hypothetical protein TERMP_02214 [Thermococcus barophilus MP] Length = 1199 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 36/330 (10%), Positives = 89/330 (26%), Gaps = 65/330 (19%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ LE ++ + + S++ + + F+ + Sbjct: 300 LIFVKFLEDKGLVPGGLLKRTFEEWRNSSVPVSYYKAYLEPLFFGVFN-TPEEERDRKVI 358 Query: 98 NNLES--YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD- 152 + Y+ F +N + + + ++ +I K + + + Sbjct: 359 EHFRDIPYLNGGLFRENLR--------NEKQYDIPDDNVMEEIIKFLERYDFTLGSKSNE 410 Query: 153 -----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA------------------ 189 ++ ++YE LI ++ +G + TP +V Sbjct: 411 ESLDPDILGHVYEKLINLLTNKGQKGLGAYYTPEEVTRTIVKSTVEPVVIKKLKEVLKKW 470 Query: 190 ------LLLDPDDALFKESPGMI---------------RTLYDPTCGTGGFLTDAMNHVA 228 L D + E + + DP G+G FL + + Sbjct: 471 GWQEQLLNFSTLDEVLNEDRPITRDGRVLKDFLDEINKMKILDPAVGSGHFLISVLKELL 530 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + G+E + + + ++ D ++ L +DL Sbjct: 531 EI-----KKRVHSLIGEEFNTYKLKLEIILNNLYGVDIDETAVEVAKLRLWLALIEDLDV 585 Query: 289 G--KRFHYCLSNPPFGKKWEKDKDAVEKEH 316 +R L N + + E Sbjct: 586 DAVRRGDVILPNIEYNVRVGNSLVGWIGER 615 Score = 38.0 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 21/184 (11%) Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + NPP+G + + E + D + F+ L+ Sbjct: 749 FDIIIGNPPYGNILSNIEKDIIDTRYREEEATYSV------DSFLAFMRRSQELLKD--- 799 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GG ++ +S G ++ R+ L+ ++ + LP D+F + + +L Sbjct: 800 -GGYLGFIIPASF----GTGVNYTKARKHFLQTMELKVFLYLPFDVFEGAYVDNSIIVL- 853 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + +V + + + + + + +I Y N R+ Sbjct: 854 KNEEPSMDNEVLIYA----FPKRSRLEELLTVWENPKIEKI--RYSLLLNDPLCRIFPGG 907 Query: 472 TFGY 475 Y Sbjct: 908 NVIY 911 >gi|836624|emb|CAA58443.1| methyltransferase [Aneurinibacillus aneurinilyticus] Length = 505 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 86/250 (34%), Gaps = 31/250 (12%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 I E LI++ + TP D+ + L++ IR L DP+CG Sbjct: 4 TIEEMLIKQ------KETGAHYTPTDLGDIIAKRLINELKKSGISGTKKIRGL-DPSCGD 56 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESDPRRDLS 273 G L + + + ++ + + + DL Sbjct: 57 GELLLSLNRMGKFNNIDNIELIGIDEDKEAIKEADFRLNEMGINDAKLSGGDFLDMVDLE 116 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKIS 332 N+ DL + ++NPP+ + D +K K GR Sbjct: 117 GNLSLFD---DDLSKIEPVDLIIANPPYVRTQVLGADRAQKLAKLFNLKGRVDLYH---- 169 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 FL+ + +L+ GG ++ S+ L N +GES IR++L EN I I+ Sbjct: 170 ----AFLVAMTLQLKP----GGLIGVITSNKYLAN---TTGES-IRQFLAENYDIIEIMD 217 Query: 393 LP-TDLFFRT 401 L T LF Sbjct: 218 LGDTKLFSGA 227 >gi|330507139|ref|YP_004383567.1| type IIS restriction enzyme Eco57I (endonuclease Eco57I) [Methanosaeta concilii GP-6] gi|328927947|gb|AEB67749.1| type IIS restriction enzyme Eco57I (Endonuclease Eco57I) [Methanosaeta concilii GP-6] Length = 906 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 14/190 (7%) Query: 71 SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS---TIARL 127 + A YN+ + + L + K I + + L Sbjct: 267 ELFRRADER-YNSGIFHFEKESGRENPDTLSLRLNIDDKPLKDIIRRLYYPDSPYEFSVL 325 Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 A +L ++ + F G + V+ + EV + TP +V Sbjct: 326 P-AEILGQVYEQFLGKVIRLTDGHRAVVED---------KPEVKKAGGVKYTPAYIVDYI 375 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L P S ++ DP CG+G FL A H+ D + ++ L Sbjct: 376 VKNTLWPTLEEKTPSDATKISVLDPACGSGSFLIVAYQHLLDWHREWYVQNLVPLLESGL 435 Query: 248 EPETHAVCVA 257 P + + Sbjct: 436 RPSSIQIRHM 445 >gi|58337054|ref|YP_193639.1| modification methylase [Lactobacillus acidophilus NCFM] gi|227903618|ref|ZP_04021423.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus acidophilus ATCC 4796] gi|58254371|gb|AAV42608.1| putative modification methylase [Lactobacillus acidophilus NCFM] gi|227868505|gb|EEJ75926.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus acidophilus ATCC 4796] Length = 333 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 91/299 (30%), Gaps = 40/299 (13%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D++ + + ++ L + ++ TP + + L+ K Sbjct: 67 DSISQKEKAQVFTFLTLKAINDDGREVNQMPTPPAISTVVAMLM-------HKLLSNKKM 119 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DPT GTG L ++ + G + + E + + + D Sbjct: 120 EIVDPTVGTGILLFSVISQLKALNHS---KDQYKLVGIDNDEEMLNLA--DVAAHLNDID 174 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + L + +S+ P G E+ R G Sbjct: 175 IE------LYCQDALMP--WMCPNADAIVSDLPVGY-------YPIDENAKNFENRAEKG 219 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S +L + + L+ GG + +V+ S L +G ++ WL + + Sbjct: 220 H---SFAHLLLIEQIIKNLKP----GGYSFLVVPKSIL----SGKIGADFMPWLTKKVYL 268 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444 +AIV LP D+F + + N + + +V L L K Sbjct: 269 KAIVELPDDMFKNKFNQKSVLVFQNHGGDAKASEVLLTKLESLKKQESLIRFNVKLNEW 327 >gi|294792246|ref|ZP_06757394.1| methylase [Veillonella sp. 6_1_27] gi|294457476|gb|EFG25838.1| methylase [Veillonella sp. 6_1_27] Length = 954 Score = 53.4 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 72/268 (26%), Gaps = 64/268 (23%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L + + + + + ++E + E T + +H Sbjct: 302 DELRVLILDSASASFDWSQISPTIFGAVFESTL---NPETRREGGMHYTSIENIHKVIDP 358 Query: 191 LLDPD-------------------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 L D AL + T DP CG+G FLT+ + + Sbjct: 359 LFLDDLRLELNEINLIKQPAAQKRKALIFQEKLASLTFLDPACGSGNFLTETYISLRNLE 418 Query: 232 SH------------------HKIPPILVPHGQELEPETHAVCVAGM-------------L 260 + I G EL +V + + Sbjct: 419 NEAISLIYGKQSMLSVMTDSIIKVSIQQMFGIELNDFAVSVAKTALWIAESQLMEKTKEI 478 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 I ++ NI +G L D + K Y + NPPF + ++ ++ + + Sbjct: 479 IYSNDTYLPLKAYNNIVEGDALKLDWNTIISNKDLKYIIGNPPFRGRSKQSQEQ-KNSSE 537 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANK 345 F G + F+ K Sbjct: 538 YVFGANFKYG-------QLDFVASWFVK 558 >gi|163868266|ref|YP_001609475.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017922|emb|CAK01480.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1653 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 21/239 (8%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + S I + D ++ + + YK F + ++ +YE Sbjct: 816 NAISQAMDKILTELDKTNIEEKTKDLDKFYKSVT-FCTAGITETHAKQNLIIKLYESFFA 874 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223 + + ++ TP VV + D F +S G ++ DP GTG F+T Sbjct: 875 KAFKKTTDKLGIVYTPVKVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 934 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282 + + H E+ + + + K+I T Sbjct: 935 LQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIETTYHSLMKGEYIPFKHIGLTDTF 994 Query: 283 SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + NPP+ + + D + R Sbjct: 995 RMLEEKNLLQELFKENSEYLEYQKKLDIKVIFGNPPYSVGQKNENDNAKNTPYPILDNR 1053 >gi|163867704|ref|YP_001608905.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017352|emb|CAK00910.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1451 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 87/320 (27%), Gaps = 44/320 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGT 216 +Y R E TP +VV + D F +S G ++ DP GT Sbjct: 667 LYNEFFRYAFPRTVEKLGIVYTPIEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGT 726 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR------- 263 G F+T + + H E+ + + + L++ Sbjct: 727 GTFITRLLQSDLIKPEDMEYKYRYDIHANEIVLLAYYIAAINIEATYHGLMKGNYIPFKH 786 Query: 264 ------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 ++DL + I + ++ + NPP+ + D + Sbjct: 787 IGLTDTFRMIEKQDLMEGILKENSEYLEHQKKLDIKVIFGNPPYSTGQKSANDNAKNTPY 846 Query: 318 NGELGRFGPGLPKIS---DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 R S + L+ ++ G V ++ + Sbjct: 847 PILDNRISETYAAQSESINMQALYDSYIRAIRWASDRIKDCGIIGFVTNAGFINACSLNG 906 Query: 373 GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417 +R+ L+E I L + +F + + IL + Sbjct: 907 ----LRKCLVEEFSSLYIFHLRGNQRTSGELSRKEGGKIFGSGSRAPIAISILVKNPNAQ 962 Query: 418 RRGKVQLINATDLWTSIRNE 437 + GK+ + D Sbjct: 963 QHGKIYFRDIGDYLNREEKL 982 >gi|330822331|ref|YP_004362552.1| hypothetical protein bgla_1p1280 [Burkholderia gladioli BSR3] gi|327374168|gb|AEA65522.1| hypothetical protein bgla_1p1280 [Burkholderia gladioli BSR3] Length = 293 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 20/156 (12%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 + +L + F + + V+ ++Y L S A F TP V + Sbjct: 101 SEMLANLMLAFLDLSKMGEFAD--VLGSLYMRL-----ELGSSRAGQFFTPYHVSRMMGQ 153 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + T+ DP CG GG + + G H+ ++ Sbjct: 154 I---QVGDGTDIRAREFVTVSDPACGAGGMIIAFADAARSVGLDHRACMHATCIDIDIRC 210 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 A +L D+ + G+ L+ D Sbjct: 211 VHMAYVQLSLL----------DIPAVVIHGNALASD 236 >gi|328953087|ref|YP_004370421.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] gi|328453411|gb|AEB09240.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109] Length = 1231 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 32/203 (15%) Query: 92 GSTNT--RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL-----------YKICK 138 + + L ++ AK + +D++ + L + Sbjct: 262 IPDHISQGDTLRLHLEKHFAEAKDVTKDYETVFGEEHISIGNRLPFYSDAAVPHWRSLIN 321 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 + + V+ +++E LI E F T +VV L + + D Sbjct: 322 EIHDFDF--SLLDYDVIGSVFERLI---APEERHKFGQFYTRPEVVDLINSFCIRRGDE- 375 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-PPILVPHGQELEPETHAVCVA 257 + DP CG G FL A + K + G ++ + Sbjct: 376 ---------KVMDPACGGGTFLVRAYVRKRELAPARKHGQLLDDLFGVDISHFATHLSTI 426 Query: 258 GMLIRRLESDPRRDLSKNIQQGS 280 + R L D I + Sbjct: 427 NLATRDL---IDADNYPQIARSD 446 >gi|223986310|ref|ZP_03636321.1| hypothetical protein HOLDEFILI_03631 [Holdemania filiformis DSM 12042] gi|223961718|gb|EEF66219.1| hypothetical protein HOLDEFILI_03631 [Holdemania filiformis DSM 12042] Length = 105 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 8/106 (7%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR-----LEKAGLLYKICKNF-S 141 ++ + N + YI + + E+ + + +L + F + Sbjct: 1 MAKETNANIGFEIGKYIDEAMEAIEK--ENTTLKGVLPKNYGTPDLDKTVLGDVVDLFTN 58 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 I + ++ YE+ I F ++ + F TP +V L Sbjct: 59 KIHMDGTDHDMDLLGRTYEYCIAEFAAKEGKDGGGFYTPSSIVKLL 104 >gi|325956045|ref|YP_004286655.1| putative type II restriction endonuclease [Lactobacillus acidophilus 30SC] gi|325332610|gb|ADZ06518.1| putative type II restriction endonuclease [Lactobacillus acidophilus 30SC] Length = 926 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 83/323 (25%), Gaps = 91/323 (28%) Query: 39 TLLRR--LECALEPT-----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91 +R LE R A+ + + D + + L Sbjct: 217 IFGKRNMFHDYLEQFDVRQMRQALIKLFKVLDTKEEDRDPY------------------L 258 Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + + Y+ + + I E F+ + L LL K F E+ P Sbjct: 259 ADDDPKLAEFPYVNGGMFSNEDI-EIPSFTDELRSL----LLSKASDEFDWSEISPT--- 310 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---- 207 + ++E + E T + +H L D + Sbjct: 311 --IFGAVFESTL---NPETRRQGGMHYTSVENIHKVIDPLFLNDLKNELNEIKKTKQLAT 365 Query: 208 ---------------TLYDPTCGTGGFLTDAMNHVADC------------------GSHH 234 T +DP CG+G FLT+ + Sbjct: 366 LKKKARKFQEKLANLTFFDPACGSGNFLTETYLQLRKLENEAIKLIYPNPSLDVGQAKDI 425 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGST 281 I +G E+ +V + I + +I +G+ Sbjct: 426 IKVSIQQFYGIEINDFAVSVAKTALWIAESQMLEETKDIFYADWDFLPLKTYTHIHEGNA 485 Query: 282 LSKDLF---TGKRFHYCLSNPPF 301 L+ D HY + NPPF Sbjct: 486 LTMDWNNVIPNYACHYIMGNPPF 508 >gi|163868188|ref|YP_001609396.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017843|emb|CAK01401.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1652 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 21/230 (9%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + S I + D ++ + + YK F + ++ +YE Sbjct: 816 NAISQAMDKILTELDKTNIEEKTKDLDKFYKSVT-FCTAGITETHAKQNLIIKLYESFFA 874 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223 + + ++ TP VV + D F +S G ++ DP GTG F+T Sbjct: 875 KAFKKTTDKLGIVYTPVKVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 934 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282 + + H E+ + + + K+I T Sbjct: 935 LQSDLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTF 994 Query: 283 SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 +L NPP+ + + D + Sbjct: 995 RMLEEKNLLQELFKENSEYLELQKNLNIKVIFGNPPYSVGQKNENDNAKN 1044 >gi|296135119|ref|YP_003642361.1| superfamily II DNA/RNA helicase [Thiomonas intermedia K12] gi|295795241|gb|ADG30031.1| superfamily II DNA/RNA helicase [Thiomonas intermedia K12] Length = 1041 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 65/237 (27%), Gaps = 31/237 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGT 216 IYE+ + + ++ ++ TP ++V + F + + DP GT Sbjct: 286 IYENFYKVYNTKAADRLGVVYTPGEIVRFMIDGADWLCEQHFGRNLIDQGVDILDPATGT 345 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G F+ + + H + K H E+ + V + ++ Sbjct: 346 GTFICELLEHFRGQPAKLKHKYQHELHANEVAILPYYVANLNIEATYAAISGEYAEFPSL 405 Query: 277 QQGSTLSK------------DLF--------------TGKRFHYCLSNPPFGKKWEKDKD 310 TL DLF +R + N P+ + + D Sbjct: 406 CFVDTLDNVGLHTAAKGATADLFGSVSEENVARIKRQNARRISVIIGNTPYNANQQSEND 465 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSSS 363 + R S L + + N G A V + S Sbjct: 466 NNKNREYPAIDARIKQTYIAQSTAQKTKLYDMYARFFRWASDRLNENGVLAFVTNRS 522 >gi|146318616|ref|YP_001198328.1| SNF2 family protein [Streptococcus suis 05ZYH33] gi|145689422|gb|ABP89928.1| SNF2 family protein [Streptococcus suis 05ZYH33] Length = 2274 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 56/394 (14%), Positives = 107/394 (27%), Gaps = 72/394 (18%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 E+ +E+ ++ FY ++ R+ +E+ IA+ Sbjct: 559 HNDTELEESDNQIPEEEVVETIPEIPVTDFYFPE--DMTDFYPKTARDKVETNIAAI--- 613 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RR 165 + ++ + A L + LL K + G+ + S E L + Sbjct: 614 --RLVKNLEVEHRNASLSEQELLAKYVG-WGGLANDFFDDYNPKFSMEREELKSLVTDKE 670 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + + T ++H + + DP+ GTG F Sbjct: 671 YSDMKQSSLTAYYTDPALIHQMW--------DKLERDGFTGGKILDPSMGTGNFFAAMPK 722 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 H+ + +G EL+ T A+ + I+ T+ Sbjct: 723 HLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV--- 760 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F F +SN PF + R+ D + + K Sbjct: 761 AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFVKK 799 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTN 402 + GG+ AI+ G I + + E V LP F TN Sbjct: 800 SLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSTFKAIAGTN 854 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 + T + + + + + Sbjct: 855 VTTDMLFFQKHLNKGYVTDDLAFSGSIRYEKDSR 888 >gi|332885095|gb|EGK05347.1| hypothetical protein HMPREF9456_02846 [Dysgonomonas mossii DSM 22836] Length = 1937 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 57/395 (14%), Positives = 108/395 (27%), Gaps = 85/395 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R S + F TP+ V+ T S + +P+ GTG F++ Sbjct: 92 RSVSSLKNSVLTAFYTPKPVIDALT--------LALNNSGIKPQRFLEPSAGTGAFISSF 143 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 V D +L ++ S + I+ + Sbjct: 144 KETVPDAEVTGFEK--------------------DLLTGKILSHLHPEDKIRIEGYEKM- 182 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + + SN PFG D + E +P +S + + Sbjct: 183 -EGRYSQHYDVIASNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFF 229 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400 K + GG A + S L + + IR L+ + + + + LP +LF Sbjct: 230 TKSVMAAREGGLIAFITSQGVLNSEQN----KPIREHLMNSCNVVSAIRLPNNLFTEEAG 285 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---RRIINDDQR-------- 449 T + + L IL + + + R + D R Sbjct: 286 TEVGSDLIILQRK-----NDNILPTQRQQDFIESRKLSNGISVNNLFKDFDRVIQTDVKV 340 Query: 450 ------------------RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491 I N F++ LD + + + L++ Sbjct: 341 GTDPYGKPAMEFTHSGGAEAIAATLYRMLNEDFTQHLDVQHYQSHAQSTVEQLQLQVAPT 400 Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526 ++ +L FW ++ + Q Sbjct: 401 AEIRQT--PNLDETRLPDDLSPFWQEVEDFLTQST 433 >gi|291521729|emb|CBK80022.1| N-6 DNA Methylase [Coprococcus catus GD/7] Length = 932 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 96/317 (30%), Gaps = 79/317 (24%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 Y+ F+D I F+ I L LL K ++F ++ P + ++E Sbjct: 281 YVNGGLFADETIEIPP---FTEEIKEL----LLTKASEDFDWSDISPT-----IFGAVFE 328 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----------------DALFKESP 203 + E T + +H + L D D +E Sbjct: 329 STL---NPETRRSGGMHYTSIENIHKVISPLFLEDLQKEFDSVRAIQVKRTRDKKLEEFQ 385 Query: 204 GMIR--TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244 + T +DP CG+G FLT+ + + + +G Sbjct: 386 NKLASLTFFDPACGSGNFLTETYLSLRRLENEVIREKVGGQMTLVEVNNPIRVSIQQFYG 445 Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTL---SKDLF 287 E+ V + I D + NI +G+ L D+ Sbjct: 446 IEINDFAVTVAKTALWIAESQMLEETKNIVYGFNDDFLPLKTYVNITEGNALRIDWNDVI 505 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 ++ + + NPPF + E K E S G++ ++ K Sbjct: 506 PAEKLSFIMGNPPFVGARWMASEQKEDVEKIFEGW--------KSIGNLDYVSCWYKKAA 557 Query: 348 LP-PNGGGRAAIVLSSS 363 N RAA+V ++S Sbjct: 558 DYMGNYNIRAALVSTNS 574 >gi|253751738|ref|YP_003024879.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84] gi|251816027|emb|CAZ51647.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84] Length = 2274 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 56/394 (14%), Positives = 107/394 (27%), Gaps = 72/394 (18%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 E+ +E+ ++ FY ++ R+ +E+ IA+ Sbjct: 559 HNDTELEESDNQIPEEEVVETIPEIPVTDFYFPE--DMTDFYPKTARDKVETNIAAI--- 613 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RR 165 + ++ + A L + LL K + G+ + S E L + Sbjct: 614 --RLVKNLEVEHRNASLSEQELLAKYVG-WGGLANDFFDDYNPKFSMEREELKSLVTDKE 670 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + + T ++H + + DP+ GTG F Sbjct: 671 YSDMKQSSLTAYYTDPALIHQMW--------DKLERDGFTGGKILDPSMGTGNFFAAMPK 722 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 H+ + +G EL+ T A+ + I+ T+ Sbjct: 723 HLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV--- 760 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F F +SN PF + R+ D + + K Sbjct: 761 AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFVKK 799 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTN 402 + GG+ AI+ G I + + E V LP F TN Sbjct: 800 SLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSTFKAIAGTN 854 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 + T + + + + + Sbjct: 855 VTTDMLFFQKHLNKGYVTDDLAFSGSIRYEKDSR 888 >gi|240080252|ref|ZP_04724795.1| hypothetical protein NgonF_02937 [Neisseria gonorrhoeae FA19] gi|240120741|ref|ZP_04733703.1| hypothetical protein NgonPI_02993 [Neisseria gonorrhoeae PID24-1] gi|254493268|ref|ZP_05106439.1| restriction enzyme alpha subunit [Neisseria gonorrhoeae 1291] gi|226512308|gb|EEH61653.1| restriction enzyme alpha subunit [Neisseria gonorrhoeae 1291] Length = 249 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 7/86 (8%) Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 SD + L + L++ GG AI+ S + +A S +++ ++A+ Sbjct: 33 KSDAELHELYFVKEMLDMLAEGGTGIAIIPVSCVIAPSKAKS-------EIVKYHRLKAV 85 Query: 391 VALPTDLFFRTNIATYLWILSNRKTE 416 +++P++LF+ T + + K Sbjct: 86 MSMPSELFYPVGTVTCIVVFEAHKPH 111 >gi|58336670|ref|YP_193255.1| methylase [Lactobacillus acidophilus NCFM] gi|58253987|gb|AAV42224.1| methylase [Lactobacillus acidophilus NCFM] Length = 939 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 77/281 (27%), Gaps = 74/281 (26%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 Y+ FSD I F+ + L LL K F E+ P + ++E Sbjct: 274 YVNGGMFSDENIEIPP---FTDELRDL----LLSKASDEFDWSEISPT-----IFGAVFE 321 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIR------------ 207 + + T + +H L D E + + Sbjct: 322 STL---NPDTRRQGGMHYTSIENIHKVIDPLFLDELKDELNELKKVKQPAKLKKKASAFQ 378 Query: 208 ------TLYDPTCGTGGFLTDAMNHVADC------------------GSHHKIPPILVPH 243 T +DP CG+G FLT+ + I + Sbjct: 379 DKLANLTFFDPACGSGNFLTETYLQLRRLENDAIKLIYPNPSLDVGQAQDIIKVSIQQFY 438 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF--- 287 G E+ +V + I + NI +G+ L D Sbjct: 439 GIEINDFAVSVAKTALWIAESQMLEETKDIFYADWDFLPLKTYTNIHEGNALRMDWNEVI 498 Query: 288 TGKRFHYCLSNPPF----GKKWEKDKDAVEKEHKNGELGRF 324 HY + NPPF G+ K+ + + RF Sbjct: 499 PSYACHYIMGNPPFVSNTGRVSNKESHSKKMLTSEQSDERF 539 >gi|189913148|ref|YP_001965036.1| Helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913483|ref|YP_001964711.1| Putative protein with DEAD/DEAH box helicase and with type III restriction enzyme motif [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777824|gb|ABZ96123.1| Helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781551|gb|ABZ99847.1| Putative protein with DEAD/DEAH box helicase and with type III restriction enzyme motif [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1647 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 65/432 (15%), Positives = 123/432 (28%), Gaps = 52/432 (12%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107 +E E S D E +A + ++ L N ++ ++ Sbjct: 770 IEAFHDFAEELRDDLNDSITDEEVVEMLAQHL---ITKPVFDALFQ-NEEFTKQNAVSKA 825 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 DN I ++ L+ Y+ K + + + ++ +Y+ Sbjct: 826 MDNILGILQEHHLEKERDTLQ---RFYESVKMRASGITNAEGRQKIIL-ELYDKFFSNAF 881 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-IRTLYDPTCGTGGFLTDAMNH 226 ++SE TP + V + D + F G + DP GTG FLT M Sbjct: 882 PKLSERLGIVYTPVEAVDFILHSVADVLQSEFGLQFGDDSVQVLDPFTGTGTFLTRLMQS 941 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAG------------------MLIRR-LESD 267 H E+ + + ML+ + Sbjct: 942 GLLTKEELIRKYKNGLHANEIVLLAYYIASINIESTYHTVTGEPYTPFGGMLLTDTFQLF 1001 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + D+ + ++ + + + NPP+ D + G R Sbjct: 1002 EKDDMISHFLPDNSERRMKQKSQNVQVIVCNPPYSAGQTSANDNNQNVKYPGLDSRIEAT 1061 Query: 328 LPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 K S S+ L+ ++ G + ++S + A G +R+ L Sbjct: 1062 YAKHSKASLQKNLYDSYIRAIRWASDRIGDSGVMGFITNASFI-EANAMDG---LRKCLQ 1117 Query: 383 ENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINA 427 E I L + LF + + I + GK+ L + Sbjct: 1118 EEFSTLYIFHLRGNQRTSGELSRKEGGKLFGSGSRAPIAITIFVKNPKAKESGKIFLHDI 1177 Query: 428 TDLWTSIRNEGK 439 D T + K Sbjct: 1178 GDYLTREQKLEK 1189 >gi|159029065|emb|CAO90051.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 575 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 76/248 (30%), Gaps = 51/248 (20%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI------- 206 NI+E +E T D++ + + + +++ + Sbjct: 293 FGNIFE---GTANAEERHTYGMHFTSEADIMKIVRPTISRYWEEKIEQAGTIGELNTLQL 349 Query: 207 ----RTLYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPILVPHGQ 245 + DP CG+G FL A + +G Sbjct: 350 ELQQYKVLDPACGSGNFLYVAYQELKRIEQLLIEKIAERRRSANDQLQISFVTPKQFYGM 409 Query: 246 ELEPETHAVCVAGMLI----------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ P + ++I S P L NI L D ++ Sbjct: 410 DINPFAVELARVTLMIARKVAIDKFNLTEASLPLDTLDSNIICADALFTDW---QKADAI 466 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPPF ++ + + ++ N GRF + D S+ F + N GR Sbjct: 467 IGNPPF-LGGKQMRLNLSDDYVNKVFGRFSE----VKD-SVDFCSYWFRLAHNQLNEKGR 520 Query: 356 AAIVLSSS 363 A +V ++S Sbjct: 521 AGLVGTNS 528 >gi|153811865|ref|ZP_01964533.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174] gi|149831999|gb|EDM87084.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174] Length = 2592 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 57/401 (14%), Positives = 105/401 (26%), Gaps = 92/401 (22%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 EP + G +I E V+ ++F+ T + L + G F Sbjct: 936 EPEAEPEIKTEEETGPEDIK-EQIVEQEPHNFHITDD-DLGSGGPKA----------KFK 983 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVP--DRVMSNIYEH 161 N +AI + LE+ L ++ + G P + Y Sbjct: 984 ANMEAI-------RLLKELEQDQRLATPEEQEVLSRYVGWGGIPQAFEERNSAWEEEYTQ 1036 Query: 162 LIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 L + + + F T V+ + +P+CG Sbjct: 1037 LKGILTPEEYSAARASTLNAFYTSPTVIKAMYE--------ALGNMGLKQGNILEPSCGV 1088 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G F+ ++ +G EL+P + + + KN Sbjct: 1089 GNFMGLLPESMSAAN----------MYGVELDPVSGQIAK-------------QLYQKNR 1125 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + + F + N PFG D+ + Sbjct: 1126 IAVQGFEETSYPDSFFDCVIGNVPFGAYQVSDRKYDRYHFMIHDY--------------- 1170 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 K GG A+V SS + E+R++ + + LP + Sbjct: 1171 -----FIAKSLDLVRPGGVVAVVTSSGTMDKQNP-----EVRQYFANRADLLGAIRLPNN 1220 Query: 397 LF---FRTNIATYLWILSNRKTEERR--GKVQLINATDLWT 432 F ++ + R VQL + + Sbjct: 1221 AFQRNANASVVADILFFQKRNRAAITEPDWVQLKTTPEGYM 1261 >gi|227552639|ref|ZP_03982688.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecium TX1330] gi|293378669|ref|ZP_06624828.1| N-6 DNA Methylase [Enterococcus faecium PC4.1] gi|227178265|gb|EEI59237.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecium TX1330] gi|292642709|gb|EFF60860.1| N-6 DNA Methylase [Enterococcus faecium PC4.1] Length = 335 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 108/341 (31%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E + + + + P+ + Sbjct: 27 SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 82 QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 136 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 137 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 179 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278 Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435 +LF + IL + ++ +V L+ L + Sbjct: 279 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 319 >gi|329965381|ref|ZP_08302305.1| hypothetical protein HMPREF9446_03922 [Bacteroides fluxus YIT 12057] gi|328522173|gb|EGF49287.1| hypothetical protein HMPREF9446_03922 [Bacteroides fluxus YIT 12057] Length = 250 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 66/250 (26%), Gaps = 71/250 (28%) Query: 115 FEDFDFSSTIARLEK-----------------AGLLYKICKNFSG-----IELHPDTVPD 152 F+ S+ + L++ LL I FS + + Sbjct: 1 MAKFELSNEVKPLDRIISRLAGECGYEVQQVFNDLLRYIIHGFSPGAPPLKDWKYKRQQN 60 Query: 153 ---RVMSNIYEHLIRR----------FGS--------EVSEGAEDFMTPRDVVHLATALL 191 M+ + +++R FG + F TP + L Sbjct: 61 MAFLEMTREWVGIMQRQTALSGWFDAFGELHMAYCSKSGQQYLGQFFTPASICELMVQCT 120 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 + + DPTCG+G L H P G+++ Sbjct: 121 RTEKGTT-------GKRISDPTCGSGRLLLAYHVH----------FPGNYLVGEDISRTC 163 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKD 308 + V MLI + +L D FT S P ++ K+ Sbjct: 164 CMMTVCNMLIHGCVGEVICH--------DSLMPDKFTDGWKVNPTLQFSGLPSIRRISKE 215 Query: 309 KDAVEKEHKN 318 + A N Sbjct: 216 EYADNHTADN 225 >gi|51209446|ref|YP_063409.1| cpp14 [Campylobacter coli] gi|39979654|gb|AAR29498.1| cpp14 [Campylobacter coli] Length = 1932 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158 Y+ S D + + S TI + + +I FSG P ++ Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261 Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ LI + + + F TP + + + L + + +++P+ Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL+ A N+ EL+ + + L Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 N + + K + + NPPFG+K D + P L K S Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLND--------------PTLNKTSV 399 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + F+ + L+ G AA V+SS L S S IR ++ E V L Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449 Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 P + F T + T + K + V+ + D + G + ND Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507 Query: 447 DQRRQ 451 + + Sbjct: 508 FRINE 512 >gi|294011835|ref|YP_003545295.1| putative type I restriction-modification system methyltransferase subunit [Sphingobium japonicum UT26S] gi|292675165|dbj|BAI96683.1| putative type I restriction-modification system methyltransferase subunit [Sphingobium japonicum UT26S] Length = 267 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 8/191 (4%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 F+ + + ++ P V+ I+ L + F TP V + + Sbjct: 74 FAEVTMALESEPGDVLGAIFGEL-----ELHNAARGQFFTPYSVCRMMAEATGIDSQEMR 128 Query: 200 K-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 + T +P CG G + + G+ L +++ +C Sbjct: 129 DIIACEGFVTAMEPACGAGAMVIALAETMR--GADINYQRHLHVTAVDIDRRAVHMCYIQ 186 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + + + + S +++ + L+N + A+ + + Sbjct: 187 LSLLHVPAVVIVGDSLSLKMQDYWYTPAHILGGWTQKLANRHRRPSDDDASPAIVRPSPH 246 Query: 319 GELGRFGPGLP 329 R G P Sbjct: 247 DAGPRIVIGPP 257 >gi|51209527|ref|YP_063459.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176] gi|121999261|ref|YP_001004014.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176] gi|39979705|gb|AAR29548.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176] gi|87248838|gb|EAQ71802.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176] Length = 1932 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158 Y+ S D + + S TI + + +I FSG P ++ Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261 Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ LI + + + F TP + + + L + + +++P+ Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL+ A N+ EL+ + + L Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 N + + K + + NPPFG+K D + P L K S Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLND--------------PTLNKTSV 399 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + F+ + L+ G AA V+SS L S S IR ++ E V L Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449 Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 P + F T + T + K + V+ + D + G + ND Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507 Query: 447 DQRRQ 451 + + Sbjct: 508 FRINE 512 >gi|257899565|ref|ZP_05679218.1| adenine-specific methyltransferase [Enterococcus faecium Com15] gi|257837477|gb|EEV62551.1| adenine-specific methyltransferase [Enterococcus faecium Com15] Length = 339 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 48/341 (14%), Positives = 109/341 (31%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E A + + + + P+ + Sbjct: 31 SFLEAYVENAENLIDDYQVRVVDGVPAKETAQRITALYEELKKLSFEPEEWR-----RLS 85 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 86 QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 140 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 141 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 183 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 184 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 230 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 231 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 282 Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435 +LF + IL + ++ +V L+ L + Sbjct: 283 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 323 >gi|297567700|ref|YP_003686671.1| hypothetical protein Mesil_3351 [Meiothermus silvanus DSM 9946] gi|296852149|gb|ADH65163.1| hypothetical protein Mesil_3351 [Meiothermus silvanus DSM 9946] Length = 1338 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 41/170 (24%) Query: 154 VMSNIYEHLI--------RRFGSEV----SEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + ++YE ++ R+ E + + + TPR++V L L P + Sbjct: 390 EIGHVYEEILALSPRLVEGRYSLESHLLERKSSGSYYTPRELVQLVVQEALAPVLEERLK 449 Query: 202 SPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------- 241 + G + DP G+G FL A+ ++A + + Sbjct: 450 AAGEDLEAQVSALLSLRVIDPAMGSGAFLISALEYLAQRLAELRQKANPQSEFARLYEEA 509 Query: 242 --------PHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTL 282 +G +L P + + I P L +++ G++L Sbjct: 510 RHEVAARCIYGVDLNPMAVELAKLSLWIAAAARGRPLSFLDHHLKVGNSL 559 >gi|124008031|ref|ZP_01692730.1| hypothetical protein M23134_01573 [Microscilla marina ATCC 23134] gi|123986445|gb|EAY26251.1| hypothetical protein M23134_01573 [Microscilla marina ATCC 23134] Length = 431 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 76/194 (39%), Gaps = 15/194 (7%) Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE--SEIRRWLLENDLIEAIVALPTD-LF 398 L ++L +A+V S++ L+ G + + +R LL++ ++ AIVALP++ F Sbjct: 248 LVSELLPYIKQARMSALVTSAAILYKGSPRNEYEVANLRIELLKSGMLRAIVALPSNQKF 307 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + I + + T +R +V +INA + + + + + +I++ Sbjct: 308 YSR-IKMVMLVFD---TSQRFDEVVVINAEHINQAKTR----YKTLETEDIEKIVNTIEQ 359 Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517 R+ + FS++ + + + K L LE + ++ + Sbjct: 360 RKEVEFFSKVYKNEQLYDAHMGMNIAALVPAKATKEELKSLEE---LAQEEQTLKTRLAE 416 Query: 518 ILKPMMQQIYPYGW 531 + + I Sbjct: 417 LRGTLDNNIGDLLD 430 >gi|116254493|ref|YP_770329.1| putative restriction modification methylase [Rhizobium leguminosarum bv. viciae 3841] gi|115259141|emb|CAK10253.1| putative restriction modification methylase [Rhizobium leguminosarum bv. viciae 3841] Length = 565 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 88/288 (30%), Gaps = 43/288 (14%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + P D +++IY L+ R + + + TP +V L L + Sbjct: 96 DSLPHAWSDHAIASIYAVLMPR---DRRKQLGAYFTPPHLVDHLVWRLQACGMDLGR--- 149 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHV-------ADCGSHHKIPPILVPHGQELEPETHAVCV 256 L DP G FL + + G E+EPE + Sbjct: 150 ---DRLRDPAAGGAAFLVPLARLMISEWRSAGATDLEILTRLPIRLLGSEIEPELAIIA- 205 Query: 257 AGMLIRRLESDPRRDLSKN------IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 L+ R+ ++ +Q +L++ T + + NPPF + D Sbjct: 206 -NALLHRMLVKEFGIDAEKAAGIGLVQTDDSLAE-GRTNGDVDHEIGNPPFLRLSRLDHA 263 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + GR + + GG +L +S L G Sbjct: 264 QARPRFADISSGR------------LNLYAMFVRRALEAVPVGGLVGYILPASFL--GGP 309 Query: 371 GSGESEIRRWLLENDLIEAI--VALPTDLFFRTNIATYLWILSNRKTE 416 S RR +L+ + AI V +D+F IL R+ Sbjct: 310 E--FSLFRRRVLQLAEVLAIDMVEKRSDVFLDAIQDACFLILRRRRAP 355 >gi|291546630|emb|CBL19738.1| N-6 DNA Methylase [Ruminococcus sp. SR1/5] Length = 734 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 96/317 (30%), Gaps = 79/317 (24%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 Y+ F+D I F+ I L LL K ++F ++ P + ++E Sbjct: 281 YVNGGLFADETIEIPP---FTEEIKEL----LLTKASEDFDWSDISPT-----IFGAVFE 328 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----------------DALFKESP 203 + E T + +H + L D D +E Sbjct: 329 STL---NPETRRSGGMHYTSIENIHKVISPLFLEDLQKEFDSIRAIQVKRTRDKKLEEFQ 385 Query: 204 GMIR--TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244 + T +DP CG+G FLT+ + + + +G Sbjct: 386 NKLASLTFFDPACGSGNFLTETYLSLRRLENEVIKEKVGGQMTLVEVNNPIRVSIQQFYG 445 Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTL---SKDLF 287 E+ V + I D + NI +G+ L D+ Sbjct: 446 IEINDFAVTVAKTALWIAESQMLEETKNIVYGFNDDFLPLKTYVNITEGNALRIDWNDVI 505 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 ++ + + NPPF + E K E S G++ ++ K Sbjct: 506 PAEKLSFIMGNPPFVGARWMASEQKEDVEKIFEGW--------KSIGNLDYVSCWYKKAA 557 Query: 348 LP-PNGGGRAAIVLSSS 363 N RAA+V ++S Sbjct: 558 DYMGNYNIRAALVSTNS 574 >gi|218132264|ref|ZP_03461068.1| hypothetical protein BACPEC_00121 [Bacteroides pectinophilus ATCC 43243] gi|217992779|gb|EEC58780.1| hypothetical protein BACPEC_00121 [Bacteroides pectinophilus ATCC 43243] Length = 139 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%) Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 + L GG +V+ S G+ E+R LL+ ++A+ ++P ++F+ Sbjct: 42 LEFVEHLLDILTIGGIGVVVVPMSC----AIGTKFKEVRERLLKKHTLKAVFSMPDEIFY 97 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 T + + + D + K Sbjct: 98 PTATNVCVMVWEAHNPHNEMVETFFGYCKDDGFEKKKICWK 138 >gi|239835171|ref|ZP_04683497.1| DNA methylase [Ochrobactrum intermedium LMG 3301] gi|239821147|gb|EEQ92718.1| DNA methylase [Ochrobactrum intermedium LMG 3301] Length = 3526 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 76/252 (30%), Gaps = 56/252 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + S T ++V ++ + + +P+ G+G FL A Sbjct: 613 EEYRAAESSTRNAHYTSPEIVKAIWSVA--------QRLGFRGGRVLEPSVGSGNFLGLA 664 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + G EL+P T + + + NI+ Sbjct: 665 PGALK---------GRAQFTGAELDPITGGIAK------------QLYPAANIKAPLGFQ 703 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F + NPPFG + D K E RF + Sbjct: 704 DLQIPDNYFELAVGNPPFGSERLYDP-------KRKEAARFSIH------------NYFF 744 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A+V+++S + + + R ++ + + + LP + F Sbjct: 745 AKSVETLKPGGVLAMVITNSFM-----DAANTAARAYIADRARLVGAIRLPNNAFLANAG 799 Query: 401 TNIATYLWILSN 412 T + T + IL Sbjct: 800 TEVTTDIVILQK 811 >gi|291540174|emb|CBL13285.1| DNA methylase [Roseburia intestinalis XB6B4] Length = 2510 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 54/402 (13%), Positives = 106/402 (26%), Gaps = 82/402 (20%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 + +R + ++ E + D + + G+ + N N Sbjct: 805 VYKRFFDIEDSVKANRLETRERAIANGWDTK--IDENGHVVS-----DDAAQKKHNFHYN 857 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRV 154 L + + D T+ ++E L K+ F G + Sbjct: 858 LWEMEKGGAKTRYQ--WNMDAIRTLKQIESGNRLATPEEQKVLSKFVGWGGLSQAFDEEN 915 Query: 155 MSNIYEH-----LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 E+ L+ + + + F T ++ + L+ + Sbjct: 916 AGWSKEYAELKELLSDEEYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRGG 967 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + +P+ G G F V + +G EL+ + + Sbjct: 968 NVLEPSMGIGNFFGSMPETVHEAK----------LYGVELDSISGRIAK----------- 1006 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + + NI + + F + N PFG D + + + Sbjct: 1007 -QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY------ 1058 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 K GG A++ + L IR++L E + Sbjct: 1059 --------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAEL 1099 Query: 388 EAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424 V LP F T + + L RK + V L Sbjct: 1100 VGAVRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1141 >gi|332827221|gb|EGJ99995.1| hypothetical protein HMPREF9455_03689 [Dysgonomonas gadei ATCC BAA-286] Length = 1937 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 82/279 (29%), Gaps = 54/279 (19%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R S + F TP+ V+ T S + +P+ GTG F++ Sbjct: 92 RSVSSLKNSVLTAFYTPKPVIDALT--------LALNNSGIKPQRFLEPSAGTGAFISSF 143 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 V D +L ++ S + I+ + Sbjct: 144 KETVPDAEVTGFEK--------------------DLLTGKILSHLHPEDKIRIEGYEKM- 182 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + + SN PFG D + E +P +S + + Sbjct: 183 -EGRYSQHYDVIASNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFF 229 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400 K + GG A + S L + + IR L+ + + + + LP +LF Sbjct: 230 TKSVMAAREGGLIAFITSQGVLNSEQN----KPIREHLMNSCNVVSAIRLPNNLFTEEAG 285 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 T + + L IL + + + R Sbjct: 286 TEVGSDLIILQRK-----NDNILPTQRQQDFIESRKLSN 319 >gi|237751872|ref|ZP_04582352.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376705|gb|EEO26796.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 1935 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 62/371 (16%), Positives = 113/371 (30%), Gaps = 70/371 (18%) Query: 95 NTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP- 151 + L S F N AI + + + A ++ +L FSG P Sbjct: 196 DDEIYLGSLKDRFQKNIHAIKLLKTIEQENRYATKQEQEIL----NRFSGWGGIPQAFDH 251 Query: 152 -DRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 ++ ++ LI + + + F TP+ V+ + L + Sbjct: 252 QNKEWEKEFKELISTLDYTEYENAKLSTLDAFYTPKIVIDTIYQ----GLNHLGFNNDKH 307 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + +++P+ G G FL+ A N+ EL+ + + + Sbjct: 308 TKEIFEPSAGIGSFLSYAKNY----------SNNYHFTCIELDSISSNILKS-------- 349 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 L N + + K + + NPPFG+K D + + Sbjct: 350 ------LHPNQTIYNKAFEHHLFDKPYDAFIGNPPFGQKKVLDPNDTTLNKSSVHNY--- 400 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 F+ + L+ G AA V+SS L S + IR ++ E Sbjct: 401 ------------FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNNTIRDYIAEQA 439 Query: 386 LIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKK 440 V LP + F T + T + K K + D + G Sbjct: 440 TFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDNKWLESVEYYEDRFDEAEKRGLN 499 Query: 441 RRIINDDQRRQ 451 I + + + Sbjct: 500 HNIFSYFRINE 510 >gi|325568565|ref|ZP_08144858.1| superfamily II DNA/RNA helicase [Enterococcus casseliflavus ATCC 12755] gi|325157603|gb|EGC69759.1| superfamily II DNA/RNA helicase [Enterococcus casseliflavus ATCC 12755] Length = 1561 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 87/304 (28%), Gaps = 36/304 (11%) Query: 108 SDNAKAIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S+ I E+ F ++ Y K + + + ++ +Y+ + Sbjct: 796 SEAMDKIVEELSRFGGFNKEQDELKEFYDSVKLRAEGIDNAEAKQRIII-TLYDKFFSKG 854 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMN 225 E ++ TP +VV + D F K + DP GTG F+ ++ Sbjct: 855 FKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKAIEDEGVHILDPFTGTGTFIVRTLH 914 Query: 226 HVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQ 277 ++ D ++ K H E+ ++ + + E + + I Sbjct: 915 YLKDKLANGKITLADITRKYTQELHANEIVLLSYYIAAINIESTFAEMNHEEYKPFEGIV 974 Query: 278 QGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKN 318 T +D F + NPP+ D + Sbjct: 975 LTDTFESTEQEDTLDDSFFGTNDERLKRQQKVPITVIIGNPPYSVGQSNANDNNQNVSHP 1034 Query: 319 GELGRFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 R K S ++L ++ G V + S + + + SG Sbjct: 1035 KLNSRIAETYVKNSKANLLRNLYDDFVKGFRWASDRIGKTGVIGFVTNGSFI-DSQTMSG 1093 Query: 374 ESEI 377 + Sbjct: 1094 MRKC 1097 >gi|269797183|ref|YP_003311083.1| N-6 DNA methylase [Veillonella parvula DSM 2008] gi|269093812|gb|ACZ23803.1| N-6 DNA methylase [Veillonella parvula DSM 2008] Length = 577 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 21/158 (13%) Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSMLFLMH 341 KD+ + F L+ P + + + E+ + +P K++DG ++ Sbjct: 199 KDIVENQLFDRILTMPLWRPSSKAMEYFPERTSLSKLD------VPESKVADGEWHEILF 252 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + L + G+ ++++S L A + + R+ L+EN IE+I+ LP L T Sbjct: 253 NLSLL----DQNGKMVTLITNSTL----ANNLSVKTRQALVENGYIESIIELPDRLLENT 304 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 I Y +LS V+ ++A+ + R Sbjct: 305 GIELYAVVLS-----YGNKGVKFLDASQAYVEQRRRKD 337 >gi|323693253|ref|ZP_08107471.1| SNF2 family N-domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502736|gb|EGB18580.1| SNF2 family N-domain-containing protein [Clostridium symbiosum WAL-14673] Length = 2971 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 59/406 (14%), Positives = 110/406 (27%), Gaps = 82/406 (20%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 A+ + G + E + +G Y+ S + NT + F N + Sbjct: 1280 EALTGENDTEPGKASEKEPEIDKSGAVNYHISFN-----EAENTGKGF-APKEKFRQNIE 1333 Query: 113 AI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-----R 165 AI E + A E+ +L K + + + N Y+ L Sbjct: 1334 AIRTLEKIEGEHRTATPEEQEILAKYVGWGGLADAFDSSKANWA--NEYQELKSLLSPEE 1391 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAM 224 + S T ++ + G R + DP G G F Sbjct: 1392 YASARESTLNAHYTSPVIIQAIYDAV---------GKMGFTRGNVLDPAAGIGNFYGCLP 1442 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + +G EL+ T + + +I+ + Sbjct: 1443 EGMKE----------SRLYGAELDGLTGRIAK------------QLYPHADIK-ITGFEN 1479 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG+ D+ + + Sbjct: 1480 TSYPNDFFDVAVGNVPFGQYKVSDRKYDKHNFLIHDY--------------------FFA 1519 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A V S + E+R++L + + V LP F T Sbjct: 1520 KTLDKVRPGGIVAFVTSKGTMDKKNP-----EVRKYLAQRAELLGAVRLPNTAFKENAGT 1574 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 + + + L R +V I + + ++ + D Sbjct: 1575 EVTSDILFLKK------RDRVMDIEPDWVHLTEKDGIVMNQYFADH 1614 >gi|305663147|ref|YP_003859435.1| N-6 DNA methylase [Ignisphaera aggregans DSM 17230] gi|304377716|gb|ADM27555.1| N-6 DNA methylase [Ignisphaera aggregans DSM 17230] Length = 701 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 82/277 (29%), Gaps = 43/277 (15%) Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + + +E LI F TP + L + + + D Sbjct: 129 NDELGKAFEELIPN---AERRKLGQFFTPIPIADLMVEYIRRNVERG---------RIVD 176 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P GTG + I G ++ P + + S Sbjct: 177 PAVGTG-------RFILRLMLKSGISKDYRITGIDVSPLMILLTATNI------SYVSDL 223 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + G D K + NPP+ + E + D K + + L + Sbjct: 224 KRLELIVGDMFDLDD-AIKESDAIICNPPYSRHHELEPDYKRKLQEKVKAAS-DVTLSRY 281 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 S F + L GG + + PL A + ++R++ E++L+E ++ Sbjct: 282 SS----FFAYALLYLSSLLKKGGYVSYI---CPLEIFEANYSDV-VKRYVAEHNLLERVI 333 Query: 392 ALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLI 425 D F + N AT + L KV + Sbjct: 334 VFDEDSFIFPYAENAATVI-FLHKDSP----TKVYFV 365 >gi|240145259|ref|ZP_04743860.1| superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82] gi|257202613|gb|EEV00898.1| superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82] Length = 1278 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 58/407 (14%), Positives = 110/407 (27%), Gaps = 80/407 (19%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 + +K L + + E + +N + + F +N Sbjct: 355 EKIGYIQKLLEQEKTELPPEEKTEAPAADRHNF------RINDDAIG--VGGAKEKFRNN 406 Query: 111 AKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLI-R 164 AI + + + +A E+ +L + + G+ + D +Y L Sbjct: 407 MAAINLLHELEIENRLATPEEQEVLSRYVG-WGGLSMAFDEHNAAWAEEFKELYASLSPE 465 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F TP V+ L S G + +P+CGTG F Sbjct: 466 EYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGTGNFFGLLP 517 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + HG E++ T + + NI K Sbjct: 518 ESMQ----------NSKLHGVEIDSLTGRIAK------------QLYQKANIAIE-GFEK 554 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F L N PFG+ D ++ + Sbjct: 555 TNLPDDHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------------FFA 594 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG + S + E+R+++ + + + LP + F T Sbjct: 595 KALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFKANAGT 649 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 + + + IL R +V I + G + Sbjct: 650 EVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 690 >gi|313669163|ref|YP_004049447.1| hypothetical protein NLA_18890 [Neisseria lactamica ST-640] gi|313006625|emb|CBN88091.1| hypothetical protein NLA_18890 [Neisseria lactamica 020-06] Length = 954 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 63/263 (23%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 YI FS ++F F++++ R + + I+ + + +++ Sbjct: 284 YINGKLFS----DGIDEFVFNASMRR--------TLLEC-CEIDW--SLISPDIFGTLFQ 328 Query: 161 HLIRRFGSEVS-------EGAEDFMTP-RDVVHLATALLLDPDDALFKESPG-------- 204 +++ + T +++ L LD A +++ G Sbjct: 329 NIMENADALGGGKKSAHRRELGAHYTSEKNIKRAIAPLFLDRLKAELEQAAGDPKKLARY 388 Query: 205 ----MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------PILVPHGQE 246 + DP CG G FL A + + HG E Sbjct: 389 ITRLQTLQILDPACGCGNFLIVAYREIRLLEMQAIRQLARIPGAQQMQSQCDVHQFHGIE 448 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDL---------SKNIQQGSTL---SKDLFTGKRFHY 294 ++P + M + + + +I+ + L D + + Y Sbjct: 449 IDPAAVEIATVAMWLTDHQMNRLYQDGYKRIPLAHKADIRCANALQTDWADTISPQNLDY 508 Query: 295 CLSNPPFGKKWEKDKDAVEKEHK 317 + NPPF K E++ + + K Sbjct: 509 IVGNPPFLGKKEQNAEQKKDMEK 531 >gi|291535497|emb|CBL08609.1| DNA methylase [Roseburia intestinalis M50/1] Length = 2587 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 57/407 (14%), Positives = 110/407 (27%), Gaps = 80/407 (19%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 + +K L + + E + +N + + F +N Sbjct: 967 EKIEYIQKLLEQEKTELPPEEKTEAPATDRHNF------RITDDAIG--VGGAKEKFRNN 1018 Query: 111 AKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLI-R 164 AI + + + +A ++ +L + + G+ + D +Y L Sbjct: 1019 MAAINLLHELEIENRLATPKEQEVLSRYVG-WGGLSMAFDEHNAAWAEEFKELYASLSPE 1077 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F TP V+ L S G + +P+CGTG F Sbjct: 1078 EYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGTGNFFGLLP 1129 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + HG E++ T + + NI K Sbjct: 1130 ESMQ----------NSKLHGVEIDSLTGRLAK------------QLYPKANIAIE-GFEK 1166 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F L N PFG+ D ++ + Sbjct: 1167 TNLPDDHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------------FFA 1206 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG + S + E+R+++ + + + LP + F T Sbjct: 1207 KALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFKANAGT 1261 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 + + + IL R +V I + G + Sbjct: 1262 EVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 1302 >gi|148656519|ref|YP_001276724.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1] gi|148568629|gb|ABQ90774.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1] Length = 792 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 84/282 (29%), Gaps = 68/282 (24%) Query: 182 DVVHLATALLLDPDDALFKESPGM--IRTLYDPTCGTGGFLTDAMNHVADC--------- 230 D++ L L + + + E T+ DPTCG+G FL A + +A Sbjct: 264 DLIRLMGDLCAEWETSRLNELDTALTSLTVLDPTCGSGAFLCAAFDLLAHLMRIVVERHT 323 Query: 231 ---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL----ESDPRRDLSKNIQ 277 G + +G ++ PE +C + +R + DP RDL NI Sbjct: 324 AGSVVSVPVGQRLRAIIERTLYGVDVMPEAAEICRMSLWLRLAALVDDPDPLRDLRFNIH 383 Query: 278 QGSTLSKDLFTGKR---------------------------FHYCLSNPPFGKKWEKDKD 310 G L+ L F + NPP+ + D Sbjct: 384 TGDALTGTLHRSDNAASIDTNYHQRSLHWSTAFPGVLERGGFDVVIGNPPYVVRSGLLSD 443 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 +E++ G + + + L G V S + Sbjct: 444 PALREYQTAVTGNLYALV----------IERALHLLRPHGWLG-MIVPVASVATDSMKPL 492 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 + +R+W V P LF ++ + I+ Sbjct: 493 QRLYAPLRQW-----HSHYAVR-PGKLFPNVDMNLTITIIQK 528 >gi|332187846|ref|ZP_08389580.1| hypothetical protein SUS17_2990 [Sphingomonas sp. S17] gi|332012196|gb|EGI54267.1| hypothetical protein SUS17_2990 [Sphingomonas sp. S17] Length = 1105 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 70/250 (28%), Gaps = 56/250 (22%) Query: 172 EGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT---------------------- 208 TPR V L T +++P + + + T Sbjct: 355 RRLGAHYTPRAYVERLVTTTVIEPLRDDWAQVLSAMETERTDNPRAAVQRVRDFHRRLAR 414 Query: 209 --LYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPILVPHGQELEP 249 + DP CGTG FL + + + HG E+ Sbjct: 415 MRILDPACGTGNFLYVTLELMKRLEGEVLEVLAELSGEELLHLDTETVHPRNFHGIEVNA 474 Query: 250 ETHAVCVAGMLI---------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRF---HYCLS 297 A+ + + SDP + ++I G L + + + Sbjct: 475 RAAAIAQLVLWLGYIRWQLRNGGQVSDPVLEDVQSIVTGDALLTVTGARTAWPEAEFIVG 534 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF KD E L R +P+ +D + + A L + R Sbjct: 535 NPPFI--GGKDLRGRLPEGMAEALWRAYAKVPRAADYVLYWWERAAQALAAKGSPLIRFG 592 Query: 358 IVLSSSPLFN 367 V ++S Sbjct: 593 FVTTNSITQT 602 >gi|296283364|ref|ZP_06861362.1| type I restriction-modification system, M subunit, putative [Citromicrobium bathyomarinum JL354] Length = 1044 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 53/295 (17%), Positives = 95/295 (32%), Gaps = 58/295 (19%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S+IYE + +E + F TP +V +L + + DP+C Sbjct: 338 ISSIYETFV----TERASRDGIFYTPPHLVDFVLDRVLPWQGEEWDLK------ILDPSC 387 Query: 215 GTGGFLTDAMNHVAD-----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 G+G FL A + + G +++P V + + Sbjct: 388 GSGIFLVKAFQRLVHRWKIGNPGQPVRAELLRRLLERNIFGVDIDPHAVRVACFSLYLAM 447 Query: 264 LE-----SDPRRDLSKNIQQGSTLSKDLFTGKR-----------FHYCLSNPPFGKKWEK 307 + + ++ + D F + F + N P+G Sbjct: 448 CDEIEPRHYWTQVSFPPMRDIRLIRSDFFAETQCGFSCETDTATFDLIIGNAPWG----- 502 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D + + R G +P +D LF+ +EL + G A I +++ LFN Sbjct: 503 DGVITDAAREWAADERRGWPVPN-NDIGGLFVAKA---MELITDAGHVALIQSANTLLFN 558 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF----------RTNIATYLWILSN 412 + E RR LL +EAI L F + + +L+ Sbjct: 559 IANTAIE--FRRKLLLTWRVEAIYNLSALRFSVFKRKTHTTKTSAAPVCIVVLAK 611 >gi|212705068|ref|ZP_03313196.1| hypothetical protein DESPIG_03137 [Desulfovibrio piger ATCC 29098] gi|212671503|gb|EEB31986.1| hypothetical protein DESPIG_03137 [Desulfovibrio piger ATCC 29098] Length = 199 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 21/133 (15%) Query: 138 KNFSGIE----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 +F+ + T + + +YE + + TP V L + Sbjct: 7 DHFANATAYLLDYMRTTNEETLGPLYEEY------AANHYTGQYFTPSSVARLMAKIT-- 58 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 + DP CG G L A + + GQ+++ Sbjct: 59 ----HTAPPETGRFKVLDPACGAGACLIAAAK-----EQTFEQNGRAIFVGQDIDLNCAR 109 Query: 254 VCVAGMLIRRLES 266 + ++ L+ Sbjct: 110 MTALNLMFFNLDG 122 >gi|163816394|ref|ZP_02207760.1| hypothetical protein COPEUT_02583 [Coprococcus eutactus ATCC 27759] gi|158448391|gb|EDP25386.1| hypothetical protein COPEUT_02583 [Coprococcus eutactus ATCC 27759] Length = 735 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 59/405 (14%), Positives = 121/405 (29%), Gaps = 76/405 (18%) Query: 38 FTLLRR-------LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 F +R L + T+ + + + + + + + Y + + Sbjct: 23 FGFYKRNFGHIYYLSVKDDETK-FIDKMFGKVENKLSAQDKMLNYSISAIYTATAVLIEL 81 Query: 91 LGSTNTRNN---LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L N +E FS N K I + F+ + L + Sbjct: 82 LNRKGIEYNENQIEKICVGFS-NMKNI--EISFADKTEKELDEILFGLLTDGID------ 132 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 E + + TP +++ ++ + + Sbjct: 133 --------------------LESRKKSGSERTPDEIIKYMLDIIGYNEIVSIS------K 166 Query: 208 TLYDPTCGTGGFLTDAMN-HVADCGSHH----------KIPPILVPHGQELEPETHAVCV 256 T+ DP CGTG F+ ++ + + + I + + + Sbjct: 167 TIVDPACGTGTFIKQIIDRFIDGLYVNQVTNTYKEKLLERKLIRAYDTKPSNVFVTKIVI 226 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFG--KKWEKDKDAVE 313 L+++ +D+ I++ +D G Y + NPP+ + + Sbjct: 227 ISSLVKKNLICEIKDVLDMIRKLPVYCQDFLCVGDNSDYIIGNPPYIRLQNMPVEYRDFI 286 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 K + GRF FL K + N GR ++ S+ L A G Sbjct: 287 KNNFVSATGRFDIFT--------CFLE----KSDKLLNKNGRMCLITSNKYL---TANYG 331 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418 IR +L + + +V L FF + + + N K++ Sbjct: 332 VG-IRAYLSQAGHVRKLVDLYDTKFFGAAVLPAIIMCENSKSDNC 375 >gi|152973689|ref|YP_001338729.1| hypothetical protein KPN_pKPN4p07120 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|294496764|ref|YP_003560457.1| hypothetical protein pKpQIL_p080 [Klebsiella pneumoniae] gi|150958471|gb|ABR80499.1| hypothetical protein KPN_pKPN4p07120 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|293339473|gb|ADE44027.1| hypothetical protein [Klebsiella pneumoniae] Length = 277 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 21/153 (13%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + + + F + + + I+ L + TP V L +L+ Sbjct: 103 IANMQEMFCLMVCALEAKFHDFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMARMLM 157 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--ELEPE 250 + I T+ DP CG G L + + I P + G +++P Sbjct: 158 PGVRDTIRRE--GIATVSDPACGAAGMLIAYAECLLE----ADINPSMHMFGSCIDIDPV 211 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + + + + + G+TL+ Sbjct: 212 AADMAFIQLSLLGI--------AAEVVTGNTLT 236 >gi|256649300|dbj|BAI15241.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-32] Length = 1362 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160 S +++ + D ++ + +A L + + SGI+ V+ +Y+ Sbjct: 698 NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219 + ++ E TP +VV + D + F ++ G + DP GTG F Sbjct: 753 GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265 +T + + H E+ + + + L+ Sbjct: 813 ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872 Query: 266 SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312 +D R + GSTL + + NPP+ E D A+ Sbjct: 873 TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ R + S + G V ++ L A Sbjct: 933 DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989 Query: 373 GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417 +R+ L E + L + +F + + I+ + Sbjct: 990 ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045 Query: 418 RRGKVQLINATDLWTSIRNEG 438 +G++ + D T + Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066 >gi|118576202|ref|YP_875945.1| helicase [Cenarchaeum symbiosum A] gi|118194723|gb|ABK77641.1| helicase [Cenarchaeum symbiosum A] Length = 1175 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 72/253 (28%), Gaps = 37/253 (14%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213 + IY + F + TP +V+ + D FK S ++DP Sbjct: 823 IKKIYGSFLEGFDPDNQSRNGIVYTPDEVIDFIIHSVQDVLKHHFKSSLTDTSVKVFDPF 882 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDL 272 GTG F+T + EL + V + + Sbjct: 883 TGTGAFVTHLLESGLIGKEKLYRKYKHDIWVNELSLLAYYVASVNIESTYASIRNGGHVS 942 Query: 273 SKNIQQGSTLSKDLFTGKRF------------------------------HYCLSNPPFG 302 ++I TL+ +R H + NPP+ Sbjct: 943 FESINYTDTLTH--HPTQRVDKSKRGKIIKLAGKMEEINENIQKINMQHIHVIMGNPPYS 1000 Query: 303 KKWEKDKDA-VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG--GRAAIV 359 E K ++ K+ F P+ + + LF ++ + G G A V Sbjct: 1001 FANENAKYPLIDARIKDTYAMEFKRKYPEGGNINSLFDSYIRSIRWASDRIGNAGVIAFV 1060 Query: 360 LSSSPLFNGRAGS 372 ++ L N A Sbjct: 1061 TNAGFLRNSSAAG 1073 >gi|68164395|ref|YP_247529.1| hypothetical protein pTet_01 [Campylobacter jejuni subsp. jejuni 81-176] gi|60617801|gb|AAX31282.1| pTet01 [Campylobacter jejuni subsp. jejuni 81-176] Length = 1932 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 115/365 (31%), Gaps = 70/365 (19%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158 Y+ S D + + S TI + + +I FSG P ++ Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261 Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ LI + + + F TP + + + L + + +++P+ Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 G G FL+ A N+ EL+ + + L Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 N + + K + + NPPFG+K + P L K S Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILEFKY--------------PTLNKTSV 399 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + F+ + L+ G AA V+SS L S S IR ++ E V L Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449 Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 P + F T + T + K + V+ + D + G + ND Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507 Query: 447 DQRRQ 451 + + Sbjct: 508 FRINE 512 >gi|307244222|ref|ZP_07526337.1| conserved domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492372|gb|EFM64410.1| conserved domain protein [Peptostreptococcus stomatis DSM 17678] Length = 67 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 V+ IYE+LI +F + + A +F TP +V L + ++ + + Sbjct: 6 PMDGKQDYDVLGFIYEYLISQFAANAGKKAGEFYTPHEVSVLMSEIVAEHLKGKKEIK 63 >gi|262371269|ref|ZP_06064588.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262313743|gb|EEY94791.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 241 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 38/243 (15%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107 EPT+ +K+ + E F+K+ S + + T + L + ++ Sbjct: 7 FEPTK----KKFSFQELEKLFDEIFLKIDRSK----SRFEVFKDFVTCSACALRNSLSGI 58 Query: 108 SDN--AKAIFEDF-DFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 S N +++ +++ + ++ +K+ + L+ + P V+ ++Y Sbjct: 59 SKNLVVQSLEDEYHKIMAKYSKEDKSNIHHLFGLLIAMMEARALPH----DVLGDLYMRF 114 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 FGS + TP + +L + L K+ + + DP CG G L Sbjct: 115 --EFGSSHN---GQHFTPTHISNLLAVMNSGQIPELIKQKGYV--SCVDPACGAGSTLLA 167 Query: 223 AMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + V P + G +++ +C + + ++ + G Sbjct: 168 KVKCV----IDGGFNPAKHLYMEGTDIDRLVALMCYVQLSL--------WNVPGRVFVGD 215 Query: 281 TLS 283 +L+ Sbjct: 216 SLT 218 >gi|308182843|ref|YP_003926970.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4] gi|308065028|gb|ADO06920.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4] Length = 1606 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 67/541 (12%), Positives = 145/541 (26%), Gaps = 95/541 (17%) Query: 36 LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 L + L+ + + ++ + + Sbjct: 750 LKMIFEKNPEFFHGFLDSLKENIHANIREDEALDMITSHIITKP----------IFDAIF 799 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N +N + + L+ LY+ K + + + Sbjct: 800 GDNIQNPIAKALDKMVLK----LSSLGLEGETKDLKN---LYESVKTEAARAKSQKSQQE 852 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211 + N+Y + + SE TP +VV + T++D Sbjct: 853 L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQNITIFD 911 Query: 212 PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P GTG F+ + + K ++ ++ + + + D Sbjct: 912 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 971 Query: 270 RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWE 306 KNI +L KD G+ + NPP+ + Sbjct: 972 LKNFKNIALTDSLDIYEEKNDKGVLPIFEDLKENKDIKDTLAGQNIRVIIGNPPYSSGAK 1031 Query: 307 KDKD-----AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + D + K K K+ + L+ G V++ Sbjct: 1032 SENDNNQNLSHPKLEKKVYETYGKNSTAKVGATTRDTLIQSIRMASDLLKDKGVLGFVVN 1091 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 S + + A R+ + + +L++L+ Sbjct: 1092 GSFIDSKSADG----FRKCVAKE-------------------FAHLYVLN---------- 1118 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481 +NA + + EG K I + R I I+ K + T Y V Sbjct: 1119 -LRVNARTSGETFKKEGGK--IFDSGSRATIAIIF--FVKDKNA---PNHTIFYYE--VE 1168 Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541 L+ L+ + +++++P ++ W++ +++ P + +SI Sbjct: 1169 DYLKREAKLNLLAGFENLDLVPFKEITPNNKGDWINQRNDGFEKLIPLKRDKKLQNDSIF 1228 Query: 542 S 542 Sbjct: 1229 D 1229 >gi|256655344|dbj|BAI21271.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-12] Length = 1352 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160 S +++ + D ++ + +A L + + SGI+ V+ +Y+ Sbjct: 698 NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219 + ++ E TP +VV + D + F ++ G + DP GTG F Sbjct: 753 GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265 +T + + H E+ + + + L+ Sbjct: 813 ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872 Query: 266 SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312 +D R + GSTL + + NPP+ E D A+ Sbjct: 873 TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ R + S + G V ++ L A Sbjct: 933 DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989 Query: 373 GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417 +R+ L E + L + +F + + I+ + Sbjct: 990 ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045 Query: 418 RRGKVQLINATDLWTSIRNEG 438 +G++ + D T + Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066 >gi|86609160|ref|YP_477922.1| hypothetical protein CYB_1700 [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557702|gb|ABD02659.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1504 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 53/202 (26%) Query: 134 YKICKNFSGIELHPDT------------VPDRVMSNIYEHLIR------------RFGSE 169 + + FS + + + + + ++YE L+ RF Sbjct: 361 RDLLQAFSHLAYYRENPTSPLRRVNYAALDVEELGSVYESLLDYQPQIVTGQGAPRFELS 420 Query: 170 VS---EGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT--------LYDPTCGTG 217 + + TP + V L + L + K + + DP CG+G Sbjct: 421 YGSERKSTGSYYTPPELVAELIRSALEPVIEERLKAARPPEEKEQAILSIRVCDPACGSG 480 Query: 218 GFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 FL A + + +G + P +C + + Sbjct: 481 HFLLAAARRLGKELAKIRTGEEEPAPKRVREAIRDVVAHCIYGVDKNPLAVELCRVALWL 540 Query: 262 RRL-ESDPRRDLSKNIQQGSTL 282 P L +I+ G +L Sbjct: 541 EAHCAGKPLTFLDHHIKCGDSL 562 >gi|290956133|ref|YP_003487315.1| hypothetical protein SCAB_16141 [Streptomyces scabiei 87.22] gi|260645659|emb|CBG68750.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 1343 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 61/237 (25%) Query: 149 TVPDRVMSNIYEHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + + ++YE L+ + + TP ++ LD Sbjct: 421 HLDAEELGSVYESLLELEPKHSTADRTFTLVEVAGNTRKTTGSYYTPSSLIECLLDSTLD 480 Query: 194 P-------------------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------- 227 P D A + + T+ DP CG+G FL + + Sbjct: 481 PVIRDAVKRGEEAASKSGATDPADAIVNELLSLTVCDPACGSGHFLVASARRIAKQVAAV 540 Query: 228 ADCGSHHKIPPILV---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQ 277 + + + +G +L P + + + LE P L +++ Sbjct: 541 RERNPEPTLDAVRHALHEVVARCIYGVDLNPMAVELAKVSLWLEALEPGKPLGFLDAHVK 600 Query: 278 QGS-------TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 G+ L +D F + KK K + + ++ + G+ F G Sbjct: 601 HGNGLIGATPKLLRDGIPDDAFIATEGD---DKKHAKALEKINQQERVGQGSLFDLG 654 >gi|168217355|ref|ZP_02642980.1| N-6 DNA methylase [Clostridium perfringens NCTC 8239] gi|182380622|gb|EDT78101.1| N-6 DNA methylase [Clostridium perfringens NCTC 8239] Length = 494 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 50/246 (20%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP+ V ++D G +TL+DP CG + D Sbjct: 23 REIGYYATPQFVARYIGKRIID--------INGKGKTLFDPCCG--------KEELTDYF 66 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S I I ++ + I + Sbjct: 67 SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPP+ + + + + K+ + GL + +F+ + +K + Sbjct: 109 YDYYIANPPYNC---HEVNFIRENKKSLKNYFNEVGL---HNMYSMFMSAIIDKAK---- 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409 G ++ + S F + +R +L I I P LF + T + I Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214 Query: 410 LSNRKT 415 L K Sbjct: 215 LRKGKE 220 >gi|254821510|ref|ZP_05226511.1| DNA methylase [Mycobacterium intracellulare ATCC 13950] Length = 1193 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 96/329 (29%), Gaps = 67/329 (20%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 EL + R + ++Y+ + + + TP V L+P E P Sbjct: 173 ELTDTNLETRFLGDLYQEI----SEDAKKRYALRQTPVFVEEFILDRTLEP---ALNERP 225 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETHAV 254 + DPTCG+G FL + D +G +L P A+ Sbjct: 226 LEGFKMIDPTCGSGHFLLGGFQRLLDRWHKQFPALDERERVQGALDSVYGVDLNPFAVAI 285 Query: 255 CVAGML---------------------IRRLESDPRRDLSKNIQQGSTLSKDL------- 286 + + +S + + GS S D Sbjct: 286 ARFRLTVAALKASGLSNLEDAPAFKYHLAAGDSLLHGLDQREFELGSEFSIDQVAANFSY 345 Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 ++ + NPP+ + + + + + G + +P Sbjct: 346 ATENFQALKIMLREGQYDCVVGNPPYIQVKDPGLNELYRNAYRHCRGTYALTVP------ 399 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL + G G ++ ++ + + G+ + +++ D ++ IV L Sbjct: 400 --FLQRFFALAKSTAAGSGWVGQIVGNAFM---KQQFGKPLVEKYIPTRD-LKLIVNLAG 453 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQL 424 T + + NR +V L Sbjct: 454 VPIPGHGTPTVILVGRNRNPTSDLVRVVL 482 >gi|209527886|ref|ZP_03276375.1| hypothetical protein AmaxDRAFT_5201 [Arthrospira maxima CS-328] gi|209491689|gb|EDZ92055.1| hypothetical protein AmaxDRAFT_5201 [Arthrospira maxima CS-328] Length = 1054 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 84/292 (28%), Gaps = 51/292 (17%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S+IYE + + + TP +V +L D + + DP C Sbjct: 339 ISSIYEEFVDKGKKNADK--GVHYTPGHIVDFILDGVLPWDSGEWNLK------ILDPAC 390 Query: 215 GTGGFLTDAMNHV----ADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLIRR 263 G+G FL A + + +I G ++ + V + + Sbjct: 391 GSGIFLVKAFQRLIYRWKKSYPNEEITAPILQQILTDNLVGVDINSQAVRVASFSLYLTM 450 Query: 264 LESDPRRDLSKNIQQ---GST--LSKDLFTGK-----------RFHYCLSNPPFGKKWEK 307 + R + ++ +S D F ++ + N P+GK Sbjct: 451 CDEIDPRYYWEQVRFPRLRDKRLISADFFQENVEGFRTVADAGQYDLVIGNAPWGKNTVT 510 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 + K + +P + G + K G A++ + L Sbjct: 511 Q--FAKSWAKTNKWP-----IPYGNIGPL-----FLPKSAALAKAGQPIAMLQPALALIF 558 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSNRKTE 416 S R L ++ IV L LF T + +S Sbjct: 559 -NQISTAKRFREKLFYEYKVDEIVNLSALRFGLFKDAISPTCIVTISAELPN 609 >gi|291547768|emb|CBL20876.1| N-6 DNA Methylase [Ruminococcus sp. SR1/5] Length = 937 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 86/316 (27%), Gaps = 76/316 (24%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 Y+ FSD I + I L LL K ++F ++ P + ++E Sbjct: 281 YVNGGLFSDETIEIPP---LTEEIKEL----LLTKASEDFDWSDISPT-----IFGAVFE 328 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKESPGMIR-------- 207 + E T +H L + K + Sbjct: 329 STL---NPETRRSGGMHYTSISNIHKVIDPLFLDKLQTEFHEILKIQVQRTKVKRLDEFQ 385 Query: 208 ------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244 T DP CG+G FLT+ + + + +G Sbjct: 386 NKLALLTFLDPACGSGNFLTETYLSLRRLENEVIREKVGGQMTLGDVHNPIRVSIQQFYG 445 Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTLSKDLFT-- 288 E+ V + I D + NI +G+ L D + Sbjct: 446 IEINDFAVTVAKTALWIAESQMMEETKNIVYGFNDDFLPLKTYVNIAEGNALKIDWNSVV 505 Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 K Y + NPPF + E G + + + + Sbjct: 506 LAKSLSYIMGNPPFVGARWMGEKQKEDVADI------FAGWKSVGNLDYVSCWYKKASDY 559 Query: 348 LPPNGGGRAAIVLSSS 363 + N RAA+V ++S Sbjct: 560 MKENINIRAALVSTNS 575 >gi|258542946|ref|YP_003188379.1| DNA helicase restriction enzyme type III R subunit [Acetobacter pasteurianus IFO 3283-01] gi|256634024|dbj|BAH99999.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-01] gi|256640136|dbj|BAI06098.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-07] gi|256646248|dbj|BAI12196.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-26] gi|256652287|dbj|BAI18221.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-01-42C] Length = 1635 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160 S +++ + D ++ + +A L + + SGI+ V+ +Y+ Sbjct: 698 NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219 + ++ E TP +VV + D + F ++ G + DP GTG F Sbjct: 753 GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265 +T + + H E+ + + + L+ Sbjct: 813 ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872 Query: 266 SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312 +D R + GSTL + + NPP+ E D A+ Sbjct: 873 TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ R + S + G V ++ L A Sbjct: 933 DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989 Query: 373 GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417 +R+ L E + L + +F + + I+ + Sbjct: 990 ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045 Query: 418 RRGKVQLINATDLWTSIRNEG 438 +G++ + D T + Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066 >gi|262040776|ref|ZP_06014005.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041861|gb|EEW42903.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 263 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 17/131 (12%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +Y ++ + +P + L L + K TL +P Sbjct: 111 DFLGALYME-----QELGADEMGQYFSPSSISRLMAGLFMPDAQETIKRE--GWMTLDEP 163 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+ G + +AD G + +++P + + + + Sbjct: 164 ACGSAGMVIAFAYWMADAGYNPSEQLYAT--CTDIDPMVADMAFIQLSLLGI-------- 213 Query: 273 SKNIQQGSTLS 283 + G+TL+ Sbjct: 214 PAKVVTGNTLT 224 >gi|256637084|dbj|BAI03053.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-03] Length = 1630 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160 S +++ + D ++ + +A L + + SGI+ V+ +Y+ Sbjct: 698 NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219 + ++ E TP +VV + D + F ++ G + DP GTG F Sbjct: 753 GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265 +T + + H E+ + + + L+ Sbjct: 813 ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872 Query: 266 SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312 +D R + GSTL + + NPP+ E D A+ Sbjct: 873 TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ R + S + G V ++ L A Sbjct: 933 DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989 Query: 373 GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417 +R+ L E + L + +F + + I+ + Sbjct: 990 ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045 Query: 418 RRGKVQLINATDLWTSIRNEG 438 +G++ + D T + Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066 >gi|148656659|ref|YP_001276864.1| hypothetical protein RoseRS_2538 [Roseiflexus sp. RS-1] gi|148568769|gb|ABQ90914.1| hypothetical protein RoseRS_2538 [Roseiflexus sp. RS-1] Length = 1243 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 50/200 (25%) Query: 134 YKICKNFSGIELHPD--------TVPDRVMSNIYEHLIR--------------RFGSEVS 171 + F + + D + + ++YE L+ F + + Sbjct: 391 RDLLHAFRHLAWYGDPPRRINYAALDTEELGSVYESLLELHPTIAWRGAVPVVAFAARSA 450 Query: 172 EG--AEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR--------TLYDPTCGTGGFL 220 E TP ++V L+P A P T+ DP CG+G FL Sbjct: 451 ERRATGSHYTPPELVAPLVQHALEPALRARLAPCPTPAEREAALLGLTVLDPACGSGHFL 510 Query: 221 TDAMNHVADCGSHHKIPP----------------ILVPHGQELEPETHAVCVAGMLIRRL 264 A H+ + + +G + P +C + + Sbjct: 511 LAAARHLGTELARIRSGDAAPAPEIVRDAVRDVIAHCLYGVDKNPLAVELCRVALWLEGH 570 Query: 265 -ESDPRRDLSKNIQQGSTLS 283 P L I+ G +L Sbjct: 571 ARGRPLTFLDHRIRCGDSLL 590 >gi|309379554|emb|CBX21920.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 954 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 81/269 (30%), Gaps = 69/269 (25%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 YI FS ++F F++++ R + + I+ + + +++ Sbjct: 284 YINGKLFS----DGIDEFVFNASMRR--------TLLEC-CEIDW--SLISPDIFGTLFQ 328 Query: 161 HLIRRF-------GSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPG-------- 204 +++ S T +++ L LD A +++ G Sbjct: 329 NIMENADAPGGGKKSAHRRELGAHYTSEKNIKRAIAPLFLDRLKAELEQAAGDPKKLARY 388 Query: 205 ----MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------PILVPHGQE 246 + DP CG G FL A + + HG E Sbjct: 389 ITRLQTLQILDPACGCGNFLIVAYREIRLLEMQAIRQLARIPGAQQMQSQCDVHQFHGIE 448 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDL---------SKNIQQGSTL---SKDLFTGKRFHY 294 ++P + M + + + +I+ + L D + + Y Sbjct: 449 IDPAAVEIATVAMWLTDHQMNRLYQDGYKRIPLAHKADIRCANALQTDWADTISPQNLDY 508 Query: 295 CLSNPPF------GKKWEKDKDAVEKEHK 317 + NPPF + +KD + V K Sbjct: 509 IVGNPPFLGKKEQNAEQKKDMEKVVGHFK 537 >gi|256643193|dbj|BAI09148.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter pasteurianus IFO 3283-22] Length = 1625 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160 S +++ + D ++ + +A L + + SGI+ V+ +Y+ Sbjct: 698 NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219 + ++ E TP +VV + D + F ++ G + DP GTG F Sbjct: 753 GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265 +T + + H E+ + + + L+ Sbjct: 813 ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872 Query: 266 SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312 +D R + GSTL + + NPP+ E D A+ Sbjct: 873 TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ R + S + G V ++ L A Sbjct: 933 DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989 Query: 373 GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417 +R+ L E + L + +F + + I+ + Sbjct: 990 ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045 Query: 418 RRGKVQLINATDLWTSIRNEG 438 +G++ + D T + Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066 >gi|84516120|ref|ZP_01003480.1| putative type II DNA modification enzyme [Loktanella vestfoldensis SKA53] gi|84509816|gb|EAQ06273.1| putative type II DNA modification enzyme [Loktanella vestfoldensis SKA53] Length = 1448 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 50/260 (19%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDR------VMSNIYEHLIR 164 +FE S+ A + K + + E P T + + ++YE L+ Sbjct: 380 GLFEPEKLSNLTACKVENKRFLKAIWHIAWFRPEGQPMTKVNWRDMQTEELGSVYESLLE 439 Query: 165 ------------RFGS------EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-- 204 F + + + TP +V L LDP + Sbjct: 440 LTPELNLEARDFTFAEGDATKGNARKVSGSYYTPDSLVKLLLDTTLDPVLDAAESRNPND 499 Query: 205 -----MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------------PHG 244 + ++ DP CG+G FL A A + H++P + G Sbjct: 500 PAAELLKLSIIDPACGSGHFLLGAARRAAARIAQHRMPGAISKEVFQHALREVVSSCIFG 559 Query: 245 QELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 + P +C + I LE P L I+ G +L +F + + + + Sbjct: 560 SDRNPMAVELCKVALWIEALEPGKPLSFLDARIKCGDSLIG-IFDYEMLKAGIPDDAYSV 618 Query: 304 KWEKDKDAVEKEHKNGELGR 323 DK + + + R Sbjct: 619 MSGDDKAVAKAFERLNKDER 638 >gi|114326583|ref|YP_743742.1| type III restriction enzyme, res subunit [Nitrosomonas eutropha C91] gi|114309522|gb|ABI60764.1| type III restriction enzyme, res subunit [Nitrosomonas eutropha C91] Length = 1513 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 55/396 (13%), Positives = 99/396 (25%), Gaps = 74/396 (18%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS------NI 158 S + + L+K ++F + + Sbjct: 643 NPMSQAMQQVLNQL----QEHHLDKE---RDTLEDFYESVKMRARDVNSAEGKQRIVVEL 695 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTG 217 Y+ R ++E TP +VV + F S + DP GTG Sbjct: 696 YDKFFRNAFPRMTERLGIVYTPVEVVDFILHSVEHVLKTEFNSSMADDNVHILDPFTGTG 755 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM----------LIRRLESD 267 F+T + H E+ + + + I + + Sbjct: 756 TFITRLLQSGIIPEERLPYKYQHEIHANEIVLLAYYIAAINIEATYHGILVGNIHGEQDN 815 Query: 268 PRRDLSKNIQQG--------STL----SKDLFT--------------GKRFHYCLSNPPF 301 I+ T +D F L NPP+ Sbjct: 816 DLIVDKPYIEYQPFKGICLTDTFQMAEKEDQFDELLKKNSNRRKRQQNLDIRVILGNPPY 875 Query: 302 --GKKWEKDKDAVEKEHKNGELGRFGPGL---PKISDGSMLFLMHLANKLELPPNGGGRA 356 G+K D +A K E R + + + G Sbjct: 876 SAGQKSANDNNANVDYPKLDERIRSTYTVRSQATNKNALYDSYIRAIRWSSDRIKDRGVI 935 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRT 401 V ++ L A G+ +R+ L+E I L + +F + Sbjct: 936 GFVTNAGFL---EANVGDG-LRQCLVEEFSNLYIFHLRGNQRTSGERSRKEGGKIFGSGS 991 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 + IL + + RG + + D T + Sbjct: 992 RAPIAISILVKKPEAKVRGNIYFHDIGDYLTREQKL 1027 >gi|227903228|ref|ZP_04021033.1| methylase [Lactobacillus acidophilus ATCC 4796] gi|227869033|gb|EEJ76454.1| methylase [Lactobacillus acidophilus ATCC 4796] Length = 637 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 65/251 (25%), Gaps = 60/251 (23%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L + + + E + + ++E + + T + +H Sbjct: 288 DELRDLLLSKASDEFDWSEISPTIFGAVFESTL---NPDTRRQGGMHYTSIENIHKVIDP 344 Query: 191 LLDPDDALFKESPGMIR-------------------TLYDPTCGTGGFLTDAMNHVADC- 230 L + ++ T +DP CG+G FLT+ + Sbjct: 345 LFLDELKDELNELKKVKQPAKLKKKASAFQDKLANLTFFDPACGSGNFLTETYLQLRRLE 404 Query: 231 -----------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 I +G E+ +V + I + Sbjct: 405 NDAIKLIYPNPSLDVGQAQDIIKVSIQQFYGIEINDFAVSVAKTALWIAESQMLEETKDI 464 Query: 274 K-------------NIQQGSTLSKDLF---TGKRFHYCLSNPPF----GKKWEKDKDAVE 313 NI +G+ L D HY + NPPF G+ K+ + + Sbjct: 465 FYADWDFLPLKTYTNIHEGNALRMDWNEVIPSYACHYIMGNPPFVSNTGRVSNKESHSKK 524 Query: 314 KEHKNGELGRF 324 RF Sbjct: 525 MLTSEQSDERF 535 >gi|262042179|ref|ZP_06015352.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040501|gb|EEW41599.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 239 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 21/157 (13%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 +A + + + F + + + I+ L + TP V L Sbjct: 61 EATDIANMQEMFCLMVCALEAKFHDFLGAIFMEL-----DLGDNFRGQYFTPYSVQCLMA 115 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--E 246 +L+ + I T+ DP CG G L + + I P + G + Sbjct: 116 RMLMPGVRDTIRRE--GIATVSDPACGAAGMLIAYAECLLE----ADINPSMHMFGSCID 169 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++P + + + + + + G+TL+ Sbjct: 170 IDPVAADMAFIQLSLLGI--------AAEVVTGNTLT 198 >gi|293370317|ref|ZP_06616874.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f] gi|292634612|gb|EFF53144.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f] Length = 1000 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 48/214 (22%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP +V +L SP + D CG G F Sbjct: 60 EYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 NH+ + +G +++ + AV +I++ Sbjct: 107 -NHLPNL---------HNAYGFDIDGKAVAVAR------------YLYPEAHIEKCD--I 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + +RF + NPPF K+ K + E G+ L ++ Sbjct: 143 RQYYPEQRFDVVIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPVGI--------LMIIVPY 193 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + ++ R A + + + F G+ S Sbjct: 194 SFMQSEFWEKTRIAGI-NGNFSFVGQTKLAPSAF 226 >gi|291545599|emb|CBL18707.1| hypothetical protein CK1_03810 [Ruminococcus sp. SR1/5] Length = 1833 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 45/316 (14%), Positives = 88/316 (27%), Gaps = 71/316 (22%) Query: 117 DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTV--PDRVMSNIYEHLI-----R 164 + + + LEK L +I + G P + +N Y L Sbjct: 339 NMEAIHLLQTLEKEERLATPEEQEILSRYVGWGGIPQAFEESNSSWANEYLELKNTLSSE 398 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T V+ +L ++ K+ + +P+CG G F+ Sbjct: 399 EYSAARASTLNAFYTSPTVIRSMYEVL---ENMGLKQGN-----ILEPSCGVGNFMGLIP 450 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL+P + + + KN + Sbjct: 451 ESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFEE 487 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D+ + Sbjct: 488 TSYPDSFFDCVIGNVPFGAYQVSDRRYDRHHFMIHDY--------------------FIA 527 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A+V SS + +R+++ + + LP + F T Sbjct: 528 KSLDLVRPGGVVAVVTSSGTMDKQNP-----VVRQYIANRAELLGAIRLPNNAFQRNANT 582 Query: 402 NIATYLWILSNRKTEE 417 ++ + + R Sbjct: 583 SVVSDILFFQKRDRAS 598 >gi|189036158|gb|ACD75429.1| AMDV3_7 [uncultured virus] Length = 416 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 33/214 (15%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 M++ D I Q + + K +F L+NPPFG K Sbjct: 1 MNMVLHG-------DGHGKIHQANGIDKTSGIEEGKFDLVLTNPPFGNKDSGKILEQ--- 50 Query: 316 HKNGELGRFGPGLPKIS--DGSM---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 F G P+ + LF+ L+ GG AI+L L N Sbjct: 51 --------FDLGAPQGKPIKEQLREILFIEKCLKFLKP----GGELAILLPDGILNNEHL 98 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ-LINATD 429 +R ++ + +I+A+++LP F + + +L +K ++ + + A Sbjct: 99 TY----VRDYIRKEAVIKAVISLPDRAFKASGANSKTSLLFLKKRLKKDEEQLPIFMAIA 154 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + + K+ + I + +IL Y ++ K Sbjct: 155 EFVGYETKTKEAKPIEHNDLPRILKTYREYKSSK 188 >gi|169342263|ref|ZP_02863343.1| N-6 DNA methylase [Clostridium perfringens C str. JGS1495] gi|169299644|gb|EDS81702.1| N-6 DNA methylase [Clostridium perfringens C str. JGS1495] Length = 494 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 69/246 (28%), Gaps = 50/246 (20%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP V ++D G TL+DP CG + D Sbjct: 23 REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S I I ++ + I + Sbjct: 67 SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPP+ +K KN GL + +F+ + +K + Sbjct: 109 YDYYIANPPYNCHEVNFIKENKKRLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409 G ++ + S F + +R +L I I P LF + T + I Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214 Query: 410 LSNRKT 415 L K Sbjct: 215 LRKGKE 220 >gi|94267948|ref|ZP_01291043.1| hypothetical protein MldDRAFT_2387 [delta proteobacterium MLMS-1] gi|93451793|gb|EAT02548.1| hypothetical protein MldDRAFT_2387 [delta proteobacterium MLMS-1] Length = 204 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILVPHGQELEPETHAVCVAGMLIRRL 264 L DP CGTGGFL A +H+ + + G ++ E +C + + L Sbjct: 117 KLSDPACGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHGL 176 >gi|254361370|ref|ZP_04977512.1| possible type IV site-specific deoxyribonuclease, methyltransferase and restriction subunits [Mannheimia haemolytica PHL213] gi|153092871|gb|EDN73908.1| possible type IV site-specific deoxyribonuclease, methyltransferase and restriction subunits [Mannheimia haemolytica PHL213] Length = 1000 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 72/454 (15%), Positives = 140/454 (30%), Gaps = 91/454 (20%) Query: 33 KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 I LR E ++ + YN+ + L + Sbjct: 237 DYINSIIFLRVCEDRSIECYESLLDVTKLEKHKKFKTNLEKADKK---YNSGLFKLQYID 293 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHPDTV 150 I S S N +I ++ + +S + + LL +I + F G EL + Sbjct: 294 Q---------LINSTSSNLWSILKELYYPYNSYSFSVLPSDLLGRIYEQFLGDELVVNNN 344 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 E +++ + + + TP ++ ++ +S Sbjct: 345 ---------ELILQP--KDYNLNRDIISTPNFIIRRIIDYTVNEYCKGKNDSNIYQSKFA 393 Query: 211 DPTCGTGGFLTDAMNHVADC------------------------GSHHKIPPILVPHGQE 246 D CG+G FL + + D K + G + Sbjct: 394 DIACGSGAFLLEVYQRLQDILVDYYIQNDKNKLEETGVNQYKLRFEDKKNLLLNCVWGVD 453 Query: 247 LEPETHAVCVAGMLIRRLESD----------PRRDLSKNIQQGSTLSK--DLFTGK---- 290 + C G+L++ LE++ +L +NI G++L D T K Sbjct: 454 KDFNAVKACRFGLLLKLLENESDVTIANKISILPNLDQNILWGNSLIDLSDKLTEKEKLK 513 Query: 291 ---------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 +F+ + NPP+ E +E K + F K D LF+ Sbjct: 514 VNPINLQEYKFNVIIGNPPY-LATEYMSSLYPEEFKIYKSKYFVAD--KQFDKYYLFIER 570 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD-LFF 399 N L G ++ S + A ++RR++ +N+ + +++ ++ LF Sbjct: 571 ALNLLNDNGLLG----YIIPSKFIKLSSAN----KLRRFIANKNNFLFKLISFGSNQLFK 622 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 + T + I + L N + Sbjct: 623 NKSTYTSIAIFKK----SLDNNILLYNNIRDYKK 652 >gi|27228570|ref|NP_758620.1| hypothetical protein pCAR1_p079 [Pseudomonas resinovorans] gi|219856992|ref|YP_002474024.1| hypothetical protein pCAR12_p079 [Pseudomonas sp. CA10] gi|26106158|dbj|BAC41598.1| hypothetical protein [Pseudomonas resinovorans] gi|219688920|dbj|BAH10011.1| hypothetical protein [Pseudomonas putida] Length = 279 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 29/170 (17%) Query: 97 RNNLESYIASFSDNAK--AIFEDF---------DFSSTIARLEKAGLLYKICKNF----- 140 R NL + + S +F DF + R E+ + K + Sbjct: 20 RKNLIRLLNANSHRHHLWDVFADFCEMGALAMSNSVDLAQRNEREKRYMSVIKKYEPSEV 79 Query: 141 -------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + + + + PD V+ ++ L + F TP V L + L Sbjct: 80 HRFPQMLAELTMAMEYGPDDVLGQVFGEL-----ELGNSSRGQFFTPYPVCKLMASQLFG 134 Query: 194 PDDALFKE-SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 L K T+ +P G G + + D G +++ + Sbjct: 135 DGADLRKRLDERGFITVNEPASGAGAMVIAIAEALGDKGFNYQRCLHVTA 184 >gi|83646527|ref|YP_434962.1| type II restriction enzyme, methylase subunit [Hahella chejuensis KCTC 2396] gi|83634570|gb|ABC30537.1| Type II restriction enzyme, methylase subunit [Hahella chejuensis KCTC 2396] Length = 1414 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 38/172 (22%) Query: 149 TVPDRVMSNIYEHLIR-----------RF----GSEVSEGAEDFMTP----RDVVHLATA 189 + ++YE L+ RF + + TP ++++ A Sbjct: 438 DMDTTEFGSVYESLLELMPQINVNGVWRFCLIKSKGDKKELGTYYTPENLVQELIKSALK 497 Query: 190 LLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHV---------------ADCG 231 +++ +P + T+ DP CG+G L A + Sbjct: 498 PVIENRLKNIGGNPSDKILSITICDPACGSGHCLIAAAKCLAAELVRYDTQSRNSELQHR 557 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282 + +G ++ +C + + +E P L +I+ G++L Sbjct: 558 IAMRKVIQKCIYGVDINNMAIELCKIALWLESVEPGKPLSFLDSHIKHGNSL 609 >gi|300778009|ref|ZP_07087867.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] gi|300503519|gb|EFK34659.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] Length = 1811 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 91/321 (28%), Gaps = 67/321 (20%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L + ++ L++ ++ + F TP Sbjct: 49 ILNPVEHEIDINHWRKTEHDLFPITQELHQLLKENSTDEKQYRRYVDSMRSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V++ ++ ++S I +P+ G G F+ + + Sbjct: 109 PEVINAISS--------TLRDSGVNIDKFLEPSAGIGSFVQSF----------AESETKV 150 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 + +++ T + NI+ + SN P Sbjct: 151 TAYEKDI--LTGKILK------------HLYPESNIRVSGFEEIPEKEQNTYDVIASNIP 196 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 FG D + P + + K GG A + Sbjct: 197 FGDTSVFDLSYSRSKD------------PAKIQAARSIHNYFFLKGNDMLREGGLQAFIT 244 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 S L + IRR L+EN+ + + + LP +LF T + + L IL ++ Sbjct: 245 SQGILNSPNNEP----IRRALMENNNLVSAIRLPNNLFSDYAGTEVGSDLIILQKNTAKQ 300 Query: 418 RRGKVQLINATDLWTSIRNEG 438 L A +L+ G Sbjct: 301 S-----LTEAEELFCQSNKTG 316 >gi|227500575|ref|ZP_03930624.1| possible helicase [Anaerococcus tetradius ATCC 35098] gi|227217316|gb|EEI82653.1| possible helicase [Anaerococcus tetradius ATCC 35098] Length = 1511 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 59/399 (14%), Positives = 122/399 (30%), Gaps = 72/399 (18%) Query: 31 FGKVILPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 + + LPF+ L+ ++ L R +K L + ++ + Sbjct: 447 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNELIRTDRENIEG 506 Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 SE SL N NL ++ A + + + + AR ++ +L K Sbjct: 507 ISEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGG 566 Query: 142 GIELHPDTVPDRVM---SNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 ++ + + + + + E+L + F TP+ V+ Sbjct: 567 LSDVFDEEKEGQWLEARNFLKENLTGEEYNRARGSTLTAFYTPKVVIDAIYE-------- 618 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 + +P+ GTG F+ + + + +G EL+ + + Sbjct: 619 SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK- 667 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + NI Q + F+ F + N PFG + ++E++ Sbjct: 668 -----------ELYPNANI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKVADREYE 710 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L + K GG A + +G ++ Sbjct: 711 RN---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDV 750 Query: 378 RRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 RR++ E + LP F T + + + L R Sbjct: 751 RRYISERAEFLGAIRLPNRTFKGVAGTEVTSDIIFLKKR 789 >gi|288961216|ref|YP_003451555.1| adenine specific DNA methyltransferase [Azospirillum sp. B510] gi|288913524|dbj|BAI75011.1| adenine specific DNA methyltransferase [Azospirillum sp. B510] Length = 1139 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 17/128 (13%) Query: 145 LHPDTVPDRVMS----NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 P YE + F E+ + + TP +VV + Sbjct: 313 DRPAFFSAFDAGQAVQYFYEPFLAAFDPELRKDLGVWYTPPEVVTYMVERVDRVLRGELG 372 Query: 201 ESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------KIPPILVPHGQEL 247 G + DP CGTG F+ ++ + + K G E+ Sbjct: 373 VKAGLADPRVHVLDPCCGTGSFVIAVLDKIRRNLAEGGAGALTALRLKEAATERVFGFEI 432 Query: 248 EPETHAVC 255 P + Sbjct: 433 MPAPFVIA 440 >gi|261209214|ref|ZP_05923606.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566131|ref|ZP_06446566.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|294614183|ref|ZP_06694103.1| adenine-specific methyltransferase [Enterococcus faecium E1636] gi|260076760|gb|EEW64495.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289162076|gb|EFD09941.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291592959|gb|EFF24548.1| adenine-specific methyltransferase [Enterococcus faecium E1636] Length = 335 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 110/341 (32%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E + + + + + P+ + Sbjct: 27 SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELNKLSFEPEEWR-----RLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 82 QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 136 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 137 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 179 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278 Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435 +LF + IL + + ++ +V L+ L + Sbjct: 279 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 319 >gi|168207928|ref|ZP_02633933.1| N-6 DNA methylase [Clostridium perfringens E str. JGS1987] gi|170660774|gb|EDT13457.1| N-6 DNA methylase [Clostridium perfringens E str. JGS1987] Length = 494 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 69/246 (28%), Gaps = 50/246 (20%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP V ++D G TL+DP CG + D Sbjct: 23 REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S I I ++ + I + Sbjct: 67 SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPP+ +K KN GL + +F+ + +K + Sbjct: 109 YDYYIANPPYNCHEVNFIKENKKRLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409 G ++ + S F + +R +L I I P LF + T + I Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214 Query: 410 LSNRKT 415 L K Sbjct: 215 LRKGKE 220 >gi|219849464|ref|YP_002463897.1| hypothetical protein Cagg_2592 [Chloroflexus aggregans DSM 9485] gi|219543723|gb|ACL25461.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485] Length = 1339 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 58/256 (22%) Query: 77 GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136 G+ +++ L + + L A+F + F RL +L + Sbjct: 323 GFDLWHSLRALWYALRTEDIAPAL-----GLPPLNGALFAELPFDGQ--RLPNTTVL-AV 374 Query: 137 CKNFSGIELHPDTV---------PDRVMSNIYEHLIRR--------------FGSEVS-E 172 + P + ++YE L+ F + + Sbjct: 375 INALTWYRPTPADRPRRVNYASLDTEELGSVYESLLDYHPQLDDNGQCLSFTFTTGSERK 434 Query: 173 GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR--------TLYDPTCGTGGFLTDA 223 + TP ++V L P + + + + DP CG+G FL A Sbjct: 435 TTGSYYTPPELVQELVDRTLVPLINDRLRTASTPAAQRAAILDLRILDPACGSGHFLLAA 494 Query: 224 MNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-S 266 + + + +G + P + + I + Sbjct: 495 ARILGRAVARLDAKGHEPSPDEVRRAIREVIAHCIYGVDANPLAVELARVALWIEAHDGG 554 Query: 267 DPRRDLSKNIQQGSTL 282 P L I+ G +L Sbjct: 555 KPLTFLDHRIRCGDSL 570 >gi|146318348|ref|YP_001198060.1| HsdM [Streptococcus suis 05ZYH33] gi|146320543|ref|YP_001200254.1| HsdM [Streptococcus suis 98HAH33] gi|145689154|gb|ABP89660.1| putative HsdM [Streptococcus suis 05ZYH33] gi|145691349|gb|ABP91854.1| putative HsdM [Streptococcus suis 98HAH33] gi|319757928|gb|ADV69870.1| putative HsdM [Streptococcus suis JS14] Length = 328 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 34/232 (14%) Query: 27 KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85 + ++ +L + L + L V +Y G ++ E + T+ Sbjct: 39 EAGEYK--LLTQSFLYKFLNDKFLYEALIVDNRYDYQGLLDLSEEDYDWFLDDIGTKTAH 96 Query: 86 YSLSTLGST-NTRNNLESYIASFSDNAKAI-----------------FEDFDFSSTIARL 127 L + + + N + F I FD + Sbjct: 97 LKPEQLIESLHRQQNQADFAEIFEQTLNQIAIDNNAIFSVHTDGGTDIRLFDQRLITDTI 156 Query: 128 EK----AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + I + ++ S ++E++I+ + + ++ TP Sbjct: 157 SDASKRNEVAASIINLLARVKFDQQIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 216 Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 V + A+L+ D +YDP+ G+G L + + + D Sbjct: 217 SVAKIIAAILVGNDQ-------PSNVKIYDPSAGSGTLLMNLASQIGDESGQ 261 >gi|149174417|ref|ZP_01853043.1| type II adenine specific methyltransferase [Planctomyces maris DSM 8797] gi|148846527|gb|EDL60864.1| type II adenine specific methyltransferase [Planctomyces maris DSM 8797] Length = 549 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 39/209 (18%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGM 205 + + Y+ + + T ++ L D Sbjct: 93 EKEFDGDQIGDQYQASLSNTYRN---QEGIYYTQDWIIERFFAHL--PEDREGL------ 141 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 T DP CG+G F+ A+ + G +++P A+ + Sbjct: 142 --TFCDPCCGSGNFILAALE---------QGFTAENIFGFDIDPVAVAITRRRLF----- 185 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + S NIQ L L G+ F +NPP+GKK K + K F Sbjct: 186 -ERTGFDSPNIQCADFLETSLQAGQPPFDVIFTNPPWGKKLNKAQ-------KQSYAVPF 237 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGG 353 G D LF ++L+ G Sbjct: 238 AAG--NSRDTCSLFFHAALSRLQPTGYLG 264 >gi|332829925|gb|EGK02553.1| hypothetical protein HMPREF9455_00803 [Dysgonomonas gadei ATCC BAA-286] Length = 1888 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 74/468 (15%), Positives = 139/468 (29%), Gaps = 76/468 (16%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R S + F TP+ ++ S + +P+ G G F+ Sbjct: 92 RYVSSLKNSVLTAFYTPKPIIDALA--------LALNNSGIKPQRFLEPSAGAGAFIASF 143 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 V D +L ++ S + I+ + Sbjct: 144 KETVPDAEVTGFEK--------------------DLLTGKILSHLHPEDKIRIEGYEKM- 182 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + + SN PFG D + E +P +S + + Sbjct: 183 -EGRYAQHYDVIASNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFF 229 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400 K + GG A + S L + + IR +L+ + + + LP +LF Sbjct: 230 TKSVMAAREGGLIAFITSQGVLNSEQN----KPIREYLMNTCQVVSAIRLPNNLFTEEAG 285 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---RRIINDDQRRQILDIYV 457 T + + L IL + + + R + D R D+ V Sbjct: 286 TEVGSDLIILQRKNA-----NILPTQRQQDFIESRKLSNGISVNNLFKDFDRVIQTDVKV 340 Query: 458 SRENGKFSRMLDYRTFGYRRI--KVLRPLRMSFI--LDKTGLARLEADITWRK--LSPLH 511 + M T G I + R L F LD ++ ++P+ Sbjct: 341 GTDPYGKPAMEFTHTGGTEAIAATLYRMLNEDFSKHLDLEHYLSHAPQKQEQQPIVAPIQ 400 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN-AFGRKDPR 570 + D+++ + Y + + + + S+ I + + + Sbjct: 401 EISVSDMVELSSKSAYEPIEEDLVLFHPFAEARNRKAWTELSEQEIKEVMESRINQPKEQ 460 Query: 571 ADPV---TDVNGEWIPD--TNLTEYENVPYLESIQDYFVREVSPHVPD 613 A V + I D + L + N+ E I+ +EVSP PD Sbjct: 461 AKNVPTTAEKKDTIIKDEASGL--FVNINTGEVIE---QKEVSP--PD 501 >gi|329940588|ref|ZP_08289869.1| Adenine specific DNA methyltransferase [Streptomyces griseoaurantiacus M045] gi|329300649|gb|EGG44546.1| Adenine specific DNA methyltransferase [Streptomyces griseoaurantiacus M045] Length = 1125 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 92/363 (25%), Gaps = 76/363 (20%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + L G++ + S ++ ++YE + + E+ + T Sbjct: 289 DDALDDL--RGIIDPLIDVLSAVDPEMFKDETGDAYLHLYEGFLGAYDPELRRRTGTYYT 346 Query: 180 PRDVVHLATALLLDPDDALFKESPGMI---RTLYDPTCGTGGFLTDAMNHVAD------- 229 +VV + + G T+ DP GTG FL + ++HVA Sbjct: 347 AGEVVRFMVGFTDEVLRDRLGQEDGYGSEDVTVVDPAMGTGTFLINIIDHVAKSLSLKYG 406 Query: 230 --CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESDPRRDLSKNIQQGSTLSK 284 S G E + +AV + + + TL Sbjct: 407 STLKSGLLRELSGRLVGLEKQTGPYAVA--ELRVHHAFRSHDADITRRPPRLLVADTLDD 464 Query: 285 DL----------------------FTGKRFHYCLSNPPF-------------GKKWEKDK 309 ++ + NPP+ + + Sbjct: 465 PAVEHHLGFMYEAIARHRRMANKIKADEKVMVVIGNPPYLRGARQSGVGRWITEGNPNGQ 524 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG------GRAAIVLSSS 363 + + GR G L + + + G G A++ +S Sbjct: 525 GPILARFHPEDNGRVGYAL--DNLYVYFWAWSTWKVFDQLTASGAPKAPSGIVALITNSG 582 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTD--------LFFRTNIATYLWILSNRK 414 L + + +R + ++ L P +F + + Sbjct: 583 YLDSEGSAGMRHYLREA-ADEGW---VIGLSPEGAYSDTRTRVFQDVKREICIAVFVRHG 638 Query: 415 TEE 417 + Sbjct: 639 APD 641 >gi|182435394|ref|YP_001823113.1| hypothetical protein SGR_1601 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463910|dbj|BAG18430.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1213 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 65/456 (14%), Positives = 126/456 (27%), Gaps = 93/456 (20%) Query: 35 ILPFTLLRRLECAL-----------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83 +L +R E + R ++ + ++ D + +F Sbjct: 69 VLGTVFVRFCEDNRLIPEPYLTAPEDDRRDLALARFEDYVSTSDDPT-YRGWLETAFEEL 127 Query: 84 SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 L N L I D+A+ + DF R E+ L++ Sbjct: 128 GAGQAGRLLFDKKHNPLFQ-IPLSHDSARDLV---DFWRA--RDEEGVLVHDFTDPLEED 181 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 R + ++Y+ L + TP V + P F Sbjct: 182 GDGTKGWDTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRTMTPAVREFG--- 234 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETHAV 254 + DPTCG+G F+ A + + + + HG +L P A+ Sbjct: 235 YEGLKMIDPTCGSGHFVLGAFRRLVRLWADGQPGRDVHERVAAALDSVHGVDLNPFAVAI 294 Query: 255 CVAGML--------IRRLESDPRRDLSKNIQQGSTLSK---------DLFTGK------- 290 +L +R L + ++ G +L K D + Sbjct: 295 ARFRLLVAAMAASGVRTLGDAAGYEWPIHLAVGDSLIKHRHKQGNLFDGLEEEGADELAE 354 Query: 291 ------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 R+H + NPP+ +K + + + + G++ +P Sbjct: 355 FKYETEDVHEHPEILRQGRYHVVVGNPPYITVKDKRLNELYRGLYDACAGKYALSVP--- 411 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-- 390 F + L G G + ++S + E L+E I Sbjct: 412 FAQRFFELALIGH-AESGRGYGMVGQITANSFMKR--------EFGTRLIETHFAHEIEL 462 Query: 391 ---VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423 + T + + +R +R + Sbjct: 463 TEVIDCSGAYIPGHGTPTVILVGRHRSGSQRSDTIL 498 >gi|319938318|ref|ZP_08012715.1| hypothetical protein HMPREF9488_03551 [Coprobacillus sp. 29_1] gi|319806611|gb|EFW03269.1| hypothetical protein HMPREF9488_03551 [Coprobacillus sp. 29_1] Length = 1397 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 51/373 (13%), Positives = 104/373 (27%), Gaps = 74/373 (19%) Query: 90 TLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKIC------KNFS 141 + + N S F++N +AI + + + A ++ +L K + F Sbjct: 811 KITNDNLGE--GSPREKFNNNVEAIRVLKKCEEENRFATPQEQEILSKYVGWGGLPQAFD 868 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + + + + E + + F TP V+ + Sbjct: 869 EKDSSWSNEYSILKNLLDE---KEYSQARGSTLTAFYTPPVVIRSMYK--------ALEN 917 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + +P+CG G F+ + + D +G EL+ + + L Sbjct: 918 MGLKTGNILEPSCGVGNFIGMLPDSLED----------CKLYGVELDSISGRIARQ--LY 965 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 ++ + N+ F + N PFG DK + + + Sbjct: 966 QKSTVAVQGYEDTNL-----------PNSFFDVSVGNVPFGDFKVLDKKYDKHKFLIHDY 1014 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 K GG A + S L +R+++ Sbjct: 1015 --------------------FFAKTLDKVRPGGVIAFITSKGTLDKENPS-----VRKYI 1049 Query: 382 LENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 + + + LP + F I+ +K + I ++ + G K Sbjct: 1050 AQRADLLGAIRLPNNTFKANAGTEVTSDIIFLQKRDSITD----IEPDWVYLGENDYGIK 1105 Query: 441 RRIINDDQRRQIL 453 D IL Sbjct: 1106 MNQYFIDNPEMIL 1118 >gi|295425499|ref|ZP_06818192.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus amylolyticus DSM 11664] gi|295064838|gb|EFG55753.1| possible site-specific DNA-methyltransferase (adenine-specific) [Lactobacillus amylolyticus DSM 11664] Length = 334 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 87/292 (29%), Gaps = 45/292 (15%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRD---VVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 I+ +L + ++ + TP V+ L LL D L + DP Sbjct: 77 IFNYLTLKAINDDGRNSNQMPTPPALATVIALLMQRLLPADQQL---------EVVDPAL 127 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 GTG L +N + + + E + + +L Sbjct: 128 GTGSLLYSVINQLKTENHSKNLYQLAGIDNDEQMLDFADIAA-----------HLNELKI 176 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 ++ + + + +S+ P G + D +A E KN + S Sbjct: 177 DLYCQDAMMP--WMTEPADAIVSDLPIGY-YPLDNNAEHFELKNKKGH---------SYA 224 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 LF+ + L+ GG A +++ + L WL + + AI+ LP Sbjct: 225 HFLFVEQIVKNLK----AGGFAFLLVPTGMLQGKDRNQFMP----WLTKKVFLNAIIDLP 276 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444 D+F + + N + V L L K Sbjct: 277 DDMFRNKFNQKSILVFQNHGDNAKAKDVLLTKLDSLKKEDSLIAFNIKLNEW 328 >gi|212705064|ref|ZP_03313192.1| hypothetical protein DESPIG_03133 [Desulfovibrio piger ATCC 29098] gi|212671508|gb|EEB31991.1| hypothetical protein DESPIG_03133 [Desulfovibrio piger ATCC 29098] Length = 199 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 21/133 (15%) Query: 138 KNFSGIE----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 +F+ + T + + +YE + + TP V L + Sbjct: 7 DHFANATAYLLDYMRTTNEETLGPLYEEY------AANHYTGQYFTPSSVARLMARIT-- 58 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 + DP CG G L A + + GQ+++ Sbjct: 59 ----HTAPPETGRFKVLDPACGAGACLIAAAK-----EQTFEQNGRALFVGQDIDLNCAR 109 Query: 254 VCVAGMLIRRLES 266 + ++ L+ Sbjct: 110 MTALNLMFFNLDG 122 >gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC 13032] gi|41223062|emb|CAF19007.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum ATCC 13032] Length = 1646 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 69/287 (24%), Gaps = 40/287 (13%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + +S +LEK Y E+ V+ ++YE ++ + SE Sbjct: 813 DALNSAELNSETEKLEK---FYDSV-RIRAAEVSSAAGKQAVIKDLYERFFKKAFKKQSE 868 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V D F + DP GTG F+ + Sbjct: 869 ALGIVYTPVEIVDFILRAADDVSKKHFGRGLSDKDVHVLDPFTGTGTFMVRLLQSGLIKP 928 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGM-----------LIRRLESDPRRDLSKNIQQGS 280 H E+ + V + +R E P + I G Sbjct: 929 EDLARKYANELHATEIMLLAYYVAAVNIETTYFGLEGERALRNGEDAPVYEPFDGIVLGD 988 Query: 281 TLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKD-----AVEKEH 316 T D F + NPP+ D Sbjct: 989 TFQMYEDDDKLDLDVFTANNDRMERQRLTPVQVIVGNPPYSVGQSSANDNNANLKYPTLD 1048 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + E + + + G A V ++ Sbjct: 1049 RRIEDSYAKYSTATNKNSLYDSYLRAFRWATDRIHTQGVVAFVSNNG 1095 >gi|110798617|ref|YP_697278.1| N-6 DNA methylase [Clostridium perfringens ATCC 13124] gi|110673264|gb|ABG82251.1| N-6 DNA methylase [Clostridium perfringens ATCC 13124] Length = 494 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 64/326 (19%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP V ++D G TL+DP CG + D Sbjct: 23 REIGYYSTPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S I I ++ + I + Sbjct: 67 SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPP+ ++ KN GL + +F+ + +K + Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409 G ++ + S F + +R +L I I P LF + T + I Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469 L K E + K+ + N + + ++ + +I + + D Sbjct: 215 LRKGK--EYQEKIVVNNRPKSIEEFKELLNGIKDNGNESLYSLQEIVLQNKK-------D 265 Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGL 495 F + P + + + L Sbjct: 266 NLEFL-----IECPEDIRSLFNNIRL 286 >gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|21325842|dbj|BAC00463.1| Restriction enzymes type I helicase subunits and related helicases [Corynebacterium glutamicum ATCC 13032] Length = 1643 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 69/287 (24%), Gaps = 40/287 (13%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + +S +LEK Y E+ V+ ++YE ++ + SE Sbjct: 810 DALNSAELNSETEKLEK---FYDSV-RIRAAEVSSAAGKQAVIKDLYERFFKKAFKKQSE 865 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V D F + DP GTG F+ + Sbjct: 866 ALGIVYTPVEIVDFILRAADDVSKKHFGRGLSDKDVHVLDPFTGTGTFMVRLLQSGLIKP 925 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGM-----------LIRRLESDPRRDLSKNIQQGS 280 H E+ + V + +R E P + I G Sbjct: 926 EDLARKYANELHATEIMLLAYYVAAVNIETTYFGLEGERALRNGEDAPVYEPFDGIVLGD 985 Query: 281 TLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKD-----AVEKEH 316 T D F + NPP+ D Sbjct: 986 TFQMYEDDDKLDLDVFTANNDRMERQRLTPVQVIVGNPPYSVGQSSANDNNANLKYPTLD 1045 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + E + + + G A V ++ Sbjct: 1046 RRIEDSYAKYSTATNKNSLYDSYLRAFRWATDRIHTQGVVAFVSNNG 1092 >gi|16081850|ref|NP_394245.1| hypothetical protein Ta0783 [Thermoplasma acidophilum DSM 1728] gi|10640062|emb|CAC11914.1| hypothetical protein [Thermoplasma acidophilum] Length = 437 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 98/300 (32%), Gaps = 33/300 (11%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 TP +V H ++ + D CG G + ++++ Sbjct: 3 GMHFTPVEVFH---RYIMPQIRDHLND-----YLWVDMFCGEGNLILPMLDYIDR--DRR 52 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFH 293 +++ + + + + R +NI+ TL + +G+ Sbjct: 53 GEFFRDHIMCFDIDESAVERSIENAMKYGIPQEMAR---RNIRTRDTLMDYPVLSGRYPV 109 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + ++NPP+ K + H+ G +DG + +G Sbjct: 110 FHITNPPYLYLGYIRKRKDARRHQEYFEG--------QNDGYQDLYQ--IAMMNDLRHGI 159 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G ++ S+ F+ +G +IR L+ I + +F T T + ILS + Sbjct: 160 GNMIYIIPSNFFFS---DAGTRKIREDFLKIYRIGSCYIFERRIFPSTG--TNVMILSFQ 214 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 +++ ++ D ++E KKR ++ + + + Y F F Sbjct: 215 RSQSPVESIEF----DAIRINKHEEKKRYVLRSENNFKPDNEYQDYIRAHFRPDHPVVKF 270 >gi|240948005|ref|ZP_04752423.1| N-6 DNA methylase [Actinobacillus minor NM305] gi|240297675|gb|EER48149.1| N-6 DNA methylase [Actinobacillus minor NM305] Length = 581 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 95/256 (37%), Gaps = 29/256 (11%) Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F K + + ++ + + RF K ++ + HL ++ A +++ Sbjct: 206 FSKGFLAEPWGMKVNINDQDNQRFSV---KSNNLQNYLIQHLFQQVNDF------AIVIM 256 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + L + E +R+WLLE ++A+++LP+ L T + L I E Sbjct: 257 PINGLHSSV--QSEELMRQWLLEQGYLKAVISLPSGLSISTMTNSALLIFDFSTKYETVN 314 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480 + L ++ + RN K + +++DI S K S+ +D ++ + Sbjct: 315 FISLKDS--EFVEKRNRETKLTQL-----DKLIDIIDSNLAHKSSKKVDVKSILNNSYIL 367 Query: 481 --LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP---------MMQQIYPY 529 R + + D + + L +++ + LK I + Sbjct: 368 NPERYVLDNSTQDALNILQEYETKKLGDLVDIYRPIPVSKLKSDGSEMFFEIQGGDIPEF 427 Query: 530 GWAESFVKESIKSNEA 545 G+ ++ KE+ NE Sbjct: 428 GYIDTASKENYIDNEL 443 >gi|89070229|ref|ZP_01157553.1| hypothetical protein OG2516_07168 [Oceanicola granulosus HTCC2516] gi|89044149|gb|EAR50307.1| hypothetical protein OG2516_07168 [Oceanicola granulosus HTCC2516] Length = 1024 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 69/238 (28%), Gaps = 32/238 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGT 216 IYE + + + ++ TP ++V + F K + DP GT Sbjct: 287 IYEGFYQSYNPDAADRLGVVYTPNEIVRFMVRATDWLCERHFGKRLADQGVEILDPATGT 346 Query: 217 GGFLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 G F+ + + H+ + + + H E+ + V + + N Sbjct: 347 GTFVCELIEHMRGEPRAVLERKYREELHANEVAILPYYVANLNIEATYAGITGQIAEYPN 406 Query: 276 IQQGSTLSKD---------------LFTGK-----------RFHYCLSNPPFGKKWEKDK 309 + TL FT + + + NPP+ + + Sbjct: 407 LCFVDTLDNVGGLGIRRGQQMSFLGQFTDENTERVQAQNRRKISVVIGNPPYNANQQNEN 466 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE----LPPNGGGRAAIVLSSS 363 D + R K+S + + ++ G A V +SS Sbjct: 467 DNNKNREYPRIDERVRNTFVKLSTAQKTKVYDMYSRFYRWAFDRIADEGIVAFVTNSS 524 >gi|292656402|ref|YP_003536299.1| N-6 adenine-specific DNA methylase domain-containing protein [Haloferax volcanii DS2] gi|291371511|gb|ADE03738.1| N-6 adenine-specific DNA methylase domain protein [Haloferax volcanii DS2] Length = 853 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 80/247 (32%), Gaps = 52/247 (21%) Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP+ + + T + ++ ++ D G+G L A ++ Sbjct: 127 YTPQAIAEILTGWAITSEND----------SVLDFATGSGTLLKQAATYL---------D 167 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------KNIQQGSTLSKDLFTGK 290 G E+ P + + +R +++ + + ++ G ++ + + Sbjct: 168 KEGRLTGVEIHPFIAKLVKSR--VRGIDNAEIFNEDFFDWRTPEQLELGEE-TQGEHSSE 224 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 ++ + NPP ++ E G F+ L+ Sbjct: 225 KYDAVVGNPPITGFLPPEQREKISEWTQGRRPSLAA----------AFVAKAVTHLKD-- 272 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 GGR A VL L +G + L E+ I IV LP +F + L +L Sbjct: 273 --GGRGAFVLPKKALKDG--------LLEQLTESCSIHRIVELPLGVFADA-HSVELVVL 321 Query: 411 SNRKTEE 417 + K E Sbjct: 322 TMVKEER 328 >gi|168209831|ref|ZP_02635456.1| N-6 DNA methylase [Clostridium perfringens B str. ATCC 3626] gi|168214951|ref|ZP_02640576.1| N-6 DNA methylase [Clostridium perfringens CPE str. F4969] gi|170712110|gb|EDT24292.1| N-6 DNA methylase [Clostridium perfringens B str. ATCC 3626] gi|170713626|gb|EDT25808.1| N-6 DNA methylase [Clostridium perfringens CPE str. F4969] Length = 494 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 70/246 (28%), Gaps = 50/246 (20%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP V ++D G +TL+DP CG + D Sbjct: 23 REIGYYSTPPFVARYIGKRIID--------INGKGKTLFDPCCG--------KEELTDYF 66 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S I I ++ + I + Sbjct: 67 SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPP+ ++ KN GL + +F+ + +K + Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409 G ++ + S F + +R +L I I P LF + T + I Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214 Query: 410 LSNRKT 415 L K Sbjct: 215 LRKGKE 220 >gi|193214780|ref|YP_001995979.1| BseRI endonuclease, putative [Chloroherpeton thalassium ATCC 35110] gi|193088257|gb|ACF13532.1| BseRI endonuclease, putative [Chloroherpeton thalassium ATCC 35110] Length = 1067 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 20/235 (8%) Query: 98 NNLESYIASFSDNAKAIFE--DFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDR 153 N L++ + + + I + DF IA L + ++ + + V + Sbjct: 267 NALQTVLNGKAFHEHNILRFVEDDFFHWIATDTHFSALKSMFRDITEKLADYDFSDVRED 326 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ +Y+ LI E ++ TP + L L +D+ DP Sbjct: 327 ILKGVYQELID---IETRHALGEYYTPDWLCELVLEDLPIREDSKI----------LDPA 373 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPP-ILVPHGQELEPETHAVCVAGMLIRRLESD--PRR 270 CG+G FL A+ + + H G ++ P + + +L+ +S + Sbjct: 374 CGSGSFLRAAVQRLRNQFPHLSADQLTAQVQGIDVHPLSVQIAKTTLLVSLGKSIRKAGK 433 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 ++ N+ +TL T + F +K++ KD EK RF Sbjct: 434 PVALNVFLANTLLLPEGTTELFGQNYHVMVDSRKYKLMKDVFEKHSLFDSAVRFS 488 >gi|168822802|ref|ZP_02834802.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340865|gb|EDZ27629.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320089261|emb|CBY99014.1| hypothetical protein SENTW_5581 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 277 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 21/148 (14%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + FS + + + I+ L + TP V L LL+ Sbjct: 108 EMFSLMVCALEAKFHDFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMARLLMPGIQD 162 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--ELEPETHAVC 255 + I T+ DP G G L + + I P G +++P + Sbjct: 163 TIRRE--GIVTVSDPASGAAGMLIAYAECLLE----ADINPSWHMFGSCIDIDPVAADMA 216 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + + + + G+TL+ Sbjct: 217 FIQLSLLGI--------AAEVVTGNTLT 236 >gi|234331|gb|AAC60387.1| methyltransferase [Acinetobacter calcoaceticus] Length = 540 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 60/303 (19%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E + F TP + + +L ++T+ +P G G + Sbjct: 24 EHRKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLG----VFSRAIL 70 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 I G E++ + NI + D Sbjct: 71 SQQKEINIK------GFEVDETIFENAK---------EYFDDFENVNILLQDYMYND--W 113 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++ + NPP+ K + D + KE + L ++ LFL+ ++L Sbjct: 114 KNKYDGIICNPPYFKFHDYDNKNILKEIETN----LKCKLNGFTNLYTLFLLKSIHQL-- 167 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIATY 406 + GR A ++ S L + ++ +L+++ + I+ + ++F Sbjct: 168 --SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTAS 221 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + + +N + KVQ N L + +I++ Y + + + Sbjct: 222 IILCAN---DNITDKVQFNNIQSLQDLSK-------------IDEIINKYPNFLETEQTY 265 Query: 467 MLD 469 Sbjct: 266 NFS 268 >gi|300777361|ref|ZP_07087219.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] gi|300502871|gb|EFK34011.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] Length = 1815 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 96/314 (30%), Gaps = 66/314 (21%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L + ++ L++ + + F TP Sbjct: 49 VLNPVENEIDINHWRKTEHDLFPLTQELHQLLKENSEDDKQYRKYVDSLKSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V+ ++ L D I +P+ G G F+ + + ++ + Sbjct: 109 PKVIDAISSALRDNGLH--------IDKFLEPSAGIGSFIQSFSENQKASVTAYEKDLLT 160 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 ++L PE + I E P R+ + + SN P Sbjct: 161 GKILKQLYPE------INIRINGFEEIPEREQN-----------------TYDVIASNIP 197 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 FG D + E S + FL K GG A + Sbjct: 198 FGDTSVFDLSYSRSRNSAKEQ-------AARSIHNYFFL-----KGADMLREGGLLAYIT 245 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417 S L + + IRR L++++ + ++V LP +LF T + + L IL +E Sbjct: 246 SQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKE 301 Query: 418 RRGKVQLINATDLW 431 L + DL+ Sbjct: 302 N-----LTDREDLF 310 >gi|168697902|ref|ZP_02730179.1| hypothetical protein GobsU_00160 [Gemmata obscuriglobus UQM 2246] Length = 1267 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 91/341 (26%), Gaps = 65/341 (19%) Query: 120 FSSTIARLEKAGLLYKICKNFSG------IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + ++ +L + + + R + ++Y+ L + Sbjct: 156 IPNWLSPDAAKDILLPFFQKIDAGSGLLVHDFTDPSFDTRFLGDLYQDL----SEAARKK 211 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 TP V L P F + DP CG+G FL N + + Sbjct: 212 YALLQTPVFVEEFILDRTLLPAIETFGL---ATVKMIDPACGSGHFLLGGFNKLLELWVK 268 Query: 234 HKI---------PPILVPHGQELEPETHAVCVAGMLI------RRLESDPRRDLSKNIQQ 278 + + HG +L P A+ +L+ D N+ Sbjct: 269 KEPGTPPRELVQRALDAIHGVDLNPYAVAIARFRLLLAAWQAAGVTSLKNAPDFKLNLAC 328 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR-----FGPGLPKISD 333 G +L G+ L FG ++ + D VE E P + Sbjct: 329 GDSLL---HGGRSVQKTLDEEVFGHTYQPE-DPVELERLLRPGTYHAVVANPPYITPKDR 384 Query: 334 G--------------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 G + +L G + ++S + E + Sbjct: 385 GLCDQYRDRYSACHRQYSLSVPFMQRLFELACANGFIGQITANSFMKR--------EFGK 436 Query: 380 WLLEN-----DLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 ++E DL I + + I T + NR Sbjct: 437 KIVEAFFPLIDLTHIIDSSGAHI-PGHGIPTVILFGRNRPP 476 >gi|557885|gb|AAA50500.1| AccI methylase [Bergeyella zoohelcum] gi|1098130|prf||2115270B methyltransferase AccI Length = 541 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 60/303 (19%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E + F TP + + +L ++T+ +P G G + Sbjct: 24 EHRKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLG----VFSRAIL 70 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 I G E++ + NI + D Sbjct: 71 SQQKEINIK------GFEVDETIFENAK---------EYFDDFENVNILLQDYMYND--W 113 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++ + NPP+ K + D + KE + L ++ LFL+ ++L Sbjct: 114 KNKYDGIICNPPYFKFHDYDNKNILKEIETN----LKCKLNGFTNLYTLFLLKSIHQL-- 167 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIATY 406 + GR A ++ S L + ++ +L+++ + I+ + ++F Sbjct: 168 --SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTAS 221 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + + +N + KVQ N L + +I++ Y + + + Sbjct: 222 IILCAN---DNITDKVQFNNIQSLQDLSK-------------IDEIINKYPNFLETEQTY 265 Query: 467 MLD 469 Sbjct: 266 NFS 268 >gi|18071214|ref|NP_542283.1| putative DNA methylase [Sinorhizobium phage PBC5] gi|17940320|gb|AAL49564.1|AF448724_1 putative DNA methylase [Sinorhizobium phage PBC5] Length = 2849 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 73/265 (27%), Gaps = 60/265 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S S T ++V A + + + +P+ G G FL Sbjct: 41 EYASAESSTRNAHYTSAEIVKAAWDIA--------RRLGFKGGQVLEPSVGAGNFLGLMP 92 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + D G EL+ T + + NIQ K Sbjct: 93 GELRD---------GARITGVELDRVTGGIAK-NL-----------YPGANIQTPVGFEK 131 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F + NPPFG + D +K F Sbjct: 132 LTLPDNYFDLAIGNPPFGSERLYD-KQRRHLNKLSIHNFFFA------------------ 172 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A+V+++ L R + + + + LP + F T Sbjct: 173 KSIETLRPGGVLAMVVTNRFL-----DGSNEAAREQIAKTADLVGAIRLPNNAFLKNAGT 227 Query: 402 NIATYLWILSNR----KTEERRGKV 422 + T + IL R K + KV Sbjct: 228 EVTTDIVILRKRLEGDKPDTSWTKV 252 >gi|159898482|ref|YP_001544729.1| hypothetical protein Haur_1958 [Herpetosiphon aurantiacus ATCC 23779] gi|159891521|gb|ABX04601.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC 23779] Length = 1333 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 33/162 (20%) Query: 154 VMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + ++YE L+ + + T ++V L+P A Sbjct: 434 ELGSVYESLLDYRPVVAGTSFDLVAGTERKTTGSYYTRPELVQELIKSALEPIIAERLRD 493 Query: 203 PGM-----IRTLYDPTCGTGGFLTDAMNHV----------------ADCGSHHKIPPILV 241 T+ DP CG+G FL A + + Sbjct: 494 KNPEQALLSITVCDPACGSGHFLLAAARRIGRELARVRSGEDQPTPDQFRHAVRDVITHC 553 Query: 242 PHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282 +G + P +C + I P + +I+ G++L Sbjct: 554 IYGVDFNPLAVDLCKLALWIEGHCAGMPLSFIDYHIRWGNSL 595 >gi|224543141|ref|ZP_03683680.1| hypothetical protein CATMIT_02341 [Catenibacterium mitsuokai DSM 15897] gi|224523928|gb|EEF93033.1| hypothetical protein CATMIT_02341 [Catenibacterium mitsuokai DSM 15897] Length = 1463 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 105/401 (26%), Gaps = 76/401 (18%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + ++ A + Y +E +L G+ + + Sbjct: 1066 EWLDAQEQAEPLPEKEKAPAVTADRNNYRITEDTLGIGGAKEKFKANMAAVN-------- 1117 Query: 114 IFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLI-RRFGSEV 170 + D + + +A E+ +L S + +Y L + + Sbjct: 1118 LLHDLEIENRLATPEEQKILAGYVGWGGLSMAFDENNAAWANEFKELYVTLSPEEYRAAK 1177 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 F TP V+ L S G + +P+CGTG F + + Sbjct: 1178 ESTLTAFYTPPVVIKAMYEAL-----DRLGFSEG---NILEPSCGTGNFFGLLPDSM--- 1226 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 HG E++ T + + NI K Sbjct: 1227 -------AKSKLHGVEIDSLTGRIAK------------QLYQKANIAIE-GFEKTKLPDD 1266 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F L N PFG ++ + + F L Sbjct: 1267 HFDVVLGNVPFG-DFKVNDSRYNAQKFLIHDFFFAKAL-------------------DKV 1306 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYL 407 GG + S + E+R+++ + + + LP + F T + + + Sbjct: 1307 RAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFRANAGTEVTSDI 1361 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 IL R +V I + + G + Sbjct: 1362 LILQK------RDRVIDIESDWVHLDTDENGVTMNSYFVEH 1396 >gi|218768566|ref|YP_002343078.1| hypothetical protein NMA1791 [Neisseria meningitidis Z2491] gi|121052574|emb|CAM08914.1| hypothetical protein NMA1791 [Neisseria meningitidis Z2491] Length = 803 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 85/346 (24%), Gaps = 83/346 (23%) Query: 24 GDFKHTDFGKVILPFTLLRRLECALEPTR----SAVREKYLAFGGSNIDLESFVKVAGYS 79 G ++ + I L + + R E L + Sbjct: 49 GIYEEHELRLFITRLLFLFFADDSAVFRRNYLFQDFLENCKEADTLGDKLNQLFE----- 103 Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK- 138 F NT + + + Y+ K FDF++ R + Sbjct: 104 FLNTP--DQKRSKTQSEKFKGFEYVNG--GLFKERLRTFDFTAKQHR--------ALIDC 151 Query: 139 -NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-- 195 NF + P+ + +++ ++ ++ A T + L + Sbjct: 152 GNFDWRNISPE-----IFGTLFQSVMD---AQERREAGAHYTEAANIDKVINGLFLENLR 203 Query: 196 -----DALFKESPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--- 237 K DP CG G FL A + + Sbjct: 204 AEFEAVKALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALK 263 Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------- 270 + HG E++ + M ++ + + R Sbjct: 264 DKADGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTL 323 Query: 271 --DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + + I ++L + Y NPPF + K+ Sbjct: 324 PLEDAAEIIHANSLRTPW---QAADYIFGNPPFIGSTYQTKEQKND 366 >gi|294054709|ref|YP_003548367.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221] gi|293614042|gb|ADE54197.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221] Length = 768 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 80/256 (31%), Gaps = 59/256 (23%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 LI RFG ++ P +V T + + + DP G G Sbjct: 45 LIARFGR---REIDELRIPYEVSRFITRI----------AQERSPKRVLDPCAGLGFLAA 91 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS- 280 A + PE+ L + + N Q G Sbjct: 92 PANAILQ--------------------PESFDAYAMSQLAAEVWAKRSDVPGINFQLGDG 131 Query: 281 --TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 L +D G+ + L+ PPFG E + Sbjct: 132 LAALLED--EGQSYDAILTCPPFGVIARGPYQFSINEKI------------REVKAEYAQ 177 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDL 397 L+ LA+ + N GG A V++++ F +G + L E + A V LP + Sbjct: 178 LLALASCMR--LNEGGVAVFVVANA--FFMDRKNGVKSL---LAEMGYKLTAAVELPAGI 230 Query: 398 FFR-TNIATYLWILSN 412 F TNIAT++ +L Sbjct: 231 FAPLTNIATHIVVLEK 246 >gi|29376809|ref|NP_815963.1| hypothetical protein EF2307 [Enterococcus faecalis V583] gi|29344274|gb|AAO82033.1| conserved hypothetical protein [Enterococcus faecalis V583] Length = 3173 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 68/253 (26%), Gaps = 59/253 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S S T V+ + +PG T+ +P+ G G F Sbjct: 1613 GEYQSAQSTVLNAHYTSPTVIQAIYNAV-----EQMDFTPG---TVLEPSMGIGNFFGML 1664 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +A +G EL+ T + + +I Sbjct: 1665 PEKLAAAK----------LYGVELDDLTGRIAR------------QLYQKADITV-DGFE 1701 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG DK + +++ + Sbjct: 1702 RTDHPDDFFDLAVGNVPFGSYQVHDKRYDRQ--------------------NLMIHDYFI 1741 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A + + + S+ R L + + V LP++ F Sbjct: 1742 TKTLDKVRPGGIVAFITTKGTM-----DKKNSKAREALAQKADLLGAVRLPSNAFKANAG 1796 Query: 401 TNIATYLWILSNR 413 T + T + R Sbjct: 1797 TEVTTDILFFQKR 1809 >gi|325914675|ref|ZP_08177016.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas vesicatoria ATCC 35937] gi|325539177|gb|EGD10832.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas vesicatoria ATCC 35937] Length = 1048 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 76/250 (30%), Gaps = 47/250 (18%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + E + TP DV L +L P+ ++ G ++ D + G G + Sbjct: 31 LGGLAAARRECLAQYFTPDDVAALMWRIL-IPEMDSIRQRTGCKVSVIDNSIGKGSLIQF 89 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A + HG+ LE A+ A +E D +++ Sbjct: 90 AR-------ADQHKVAGFDIHGESLEALGKALEAA-----GVEHDLLCADMTDVRP---- 133 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 KR+ L+NPPF + ++ GRFG P S S Sbjct: 134 -------KRYDIALANPPFSVHL---QSVHMMDYACTSYGRFG---PNTSAMS------- 173 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FR 400 +VL + + ES R A+V LP F Sbjct: 174 HPYALAQALEAAEIGVVLLPTTYAHHAWNQHESSAR--------FHALVDLPARTFIDQG 225 Query: 401 TNIATYLWIL 410 T I L + Sbjct: 226 TAIEVSLIVF 235 >gi|300779500|ref|ZP_07089358.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] gi|300505010|gb|EFK36150.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910] Length = 1776 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 57/360 (15%), Positives = 100/360 (27%), Gaps = 73/360 (20%) Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 EL + N Y I + + F TP ++ A + D + Sbjct: 73 TQELFSHIKDNSESENSYREYISKI---RGSILDAFYTPTEITQSIAAAITDTGIS---- 125 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 I ++ +P+ G G F+ + + Q+ L+ Sbjct: 126 ----ISSILEPSAGVGAFI---------EPFTGIDGRRICAYEQD-------------LL 159 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + +I+ + + + N PFG D + Sbjct: 160 TGKILKNLYGSNADIR-IDSFENMHEEDTGYDLIIGNIPFGTTSIFDLSYSRG---KDQA 215 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 +F S + FL K GG A + S L + IR L Sbjct: 216 RKFAA----QSVHNYFFL-----KATDKLREGGLLAFITSQGVLNSQSNFP----IREAL 262 Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE-------------RRGKVQLIN 426 + + + LP +LF T++ T L +L + N Sbjct: 263 MNEHRFVSALRLPNNLFEESGTSVGTDLIVLQKSSGPRSLSGRALDFMGTSENCNLLFNN 322 Query: 427 -----ATDLWTSIRNEGKKRR-IINDDQRRQIL-DIYVSRENGKFSRMLDYRTFGYRRIK 479 AT + GK ++D +I D+Y F R D + F ++ Sbjct: 323 PNHIIATRSFQDTDKYGKPITIHLHDGGTERIAEDLYRKLSE-DFQRYFDLKMFNEHKVT 381 >gi|148641527|ref|YP_001274371.1| Type II restriction enzyme methylase subunits-like protein [Psychrobacter sp. PRwf-1] gi|148573279|gb|ABQ95333.1| Type II restriction enzyme methylase subunits-like protein [Psychrobacter sp. PRwf-1] Length = 934 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 67/245 (27%), Gaps = 52/245 (21%) Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI----RRFGSEVSEGAE 175 F TI LY + ++ + + ++++ ++ + Sbjct: 262 FEETINIPYFDEKLYNLVMECDALDWT--EISPAIFGSMFQSVLDASGGDSTEDKRREFG 319 Query: 176 DFMTP-RDVVHLATALLLDPDDALFKESPG------------MIRTLYDPTCGTGGFLTD 222 T ++++ + +L L F + +DP CG G FL Sbjct: 320 AHYTSEKNILKVINSLFLQELRDEFSKCTNNTPRAVQLYEKLPTLKFFDPACGCGNFLII 379 Query: 223 AMNHVA--------DCGSHHKIPPI---------LVPHGQELEPETHAVCVAGMLIRRLE 265 A + K +G E+EP + M I + Sbjct: 380 AYRELRLLENQLIAKIFGDQKGLLDISSMCNVTVDQFYGIEIEPHAVHIARVAMWITDHQ 439 Query: 266 SDPRRDL-------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDK 309 + S +I +G+ L D Y + NPPF K + Sbjct: 440 LNMTTAERFGTTRPTTPIVYSPHIIEGNALQIDWETVLPANDCSYVMGNPPFIGKSNQSS 499 Query: 310 DAVEK 314 + Sbjct: 500 EQKSD 504 >gi|313896529|ref|ZP_07830080.1| type I restriction modification DNA specificity domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974953|gb|EFR40417.1| type I restriction modification DNA specificity domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 452 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 24/160 (15%) Query: 261 IRRLESDPRRDLSKN-IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 I + + + Q +++ + F ++F +S P + + ++ Sbjct: 75 IHVILLKEILRAYPHTVVQKTSIYEYEFLREKFDLIMSVP-----------TMGRRNRVD 123 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 +L RF D M+ L +L L G+ AIV+ + F G + +R Sbjct: 124 DLNRFMCR-----DYEMVALENLLLHLSSA----GKLAIVMPAKITFGGGRI---ANLRN 171 Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 ++ E +E I LP +F T + T+L+++S KTE+ Sbjct: 172 FIQEMYCLEEIAELPDGIFVGTGVKTHLFVISAGKTEDVT 211 >gi|307710462|ref|ZP_07646899.1| endonuclease and methylase LlaGI [Streptococcus mitis SK564] gi|307618725|gb|EFN97864.1| endonuclease and methylase LlaGI [Streptococcus mitis SK564] Length = 1565 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 68/250 (27%), Gaps = 34/250 (13%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 +Y+ +E TP +VV + + K + DP G Sbjct: 832 TLYDKFFSTGFKSTTERLGIVFTPVEVVDFIVKSVDVVLRKHFGKTLASENVHILDPFTG 891 Query: 216 TGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGM--LIRRLES 266 TG F+T ++++ + H E+ ++ + + + + Sbjct: 892 TGTFITRTLHYLKSLMDSGEITFDDILRKYTQELHANEIVLLSYYIAAINIEAVFDEING 951 Query: 267 DPRRDLSKNIQQGSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEK 307 D + I T +D F + NPP+ K Sbjct: 952 DEPYTPFEGIVLTDTFESTELEDTLDDSFFGTNDKRLKRQQEQPITAIIGNPPYSKGQGS 1011 Query: 308 DKDAVEKEH--KNGELGRFGPGLPKISDGSMLFL---MHLANKLELPPNGGGRAAIVLSS 362 + D + H K E R ++ + + G + V + Sbjct: 1012 ESDNNQNIHYPKLEENIRRTYVAKSKANAQNATMDSYVKAVRWATDRLTNQGIISFVSNG 1071 Query: 363 SPLFNGRAGS 372 S L + A Sbjct: 1072 SFLDSSSADG 1081 >gi|153011948|ref|YP_001373160.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188] gi|151563836|gb|ABS17331.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188] Length = 1702 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 73/279 (26%), Gaps = 60/279 (21%) Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + E ++ + S TP ++ A + + Sbjct: 144 DDLGGSLESVVSETDYASLARCTQYAHFTPEFIIRAIW--------AGLQRLGWRGGRVL 195 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P GTG F G EL+P T + Sbjct: 196 EPGIGTGLFPALMPEAFRA---------SSYVTGIELDPVTARIVR------------LL 234 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I G DL G + + NPPF + + Sbjct: 235 QPKARIVNGDFARTDL--GVIYDLAIGNPPFSDRTVRSDRNYRSLGLRLHDY-------- 284 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ + L+ G AA V S + ++ R + ++ + A Sbjct: 285 -------FIARSIDLLKP----GALAAFVTSHGTM-----DKADTTAREHIAKSANLVAA 328 Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426 + LP F T++ + RK E G V ++ Sbjct: 329 IRLPEGAFRADAGTDVVVDILFFRKRKAGEPEGDVTWLD 367 >gi|253699431|ref|YP_003020620.1| hypothetical protein GM21_0788 [Geobacter sp. M21] gi|251774281|gb|ACT16862.1| hypothetical protein GM21_0788 [Geobacter sp. M21] Length = 93 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFGGSNID 68 N++W A + G I P ++RR+ + ++ A G + D Sbjct: 15 VNWLWDAACSIRGAVGALKQKDYIQPLIVIRRISDVGGEIAHLAEDFLDEEAAQGIAEAD 74 Query: 69 LESFV 73 + Sbjct: 75 RKLIR 79 >gi|298736366|ref|YP_003728892.1| hypothetical protein HPB8_871 [Helicobacter pylori B8] gi|298355556|emb|CBI66428.1| hypothetical protein HPB8_871 [Helicobacter pylori B8] Length = 968 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 43/372 (11%), Positives = 93/372 (25%), Gaps = 53/372 (14%) Query: 36 LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 L + L+ R + + ++ + L Sbjct: 111 LKMIFDKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHIITKP----------IFDALF 160 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N +N + + L+ LY+ K + + + Sbjct: 161 GDNIQNPIAKALDKMVQK----LSTLGLQGETKDLKN---LYESVKTEATHAKSQKSQQE 213 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211 + N+Y + + SE TP +VV + T++D Sbjct: 214 L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 272 Query: 212 PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P GTG F+ + + K ++ ++ + + + D Sbjct: 273 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 332 Query: 270 RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWE 306 KNI +L KD + + NPP+ + Sbjct: 333 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKDIKDTLANQNIRVIIGNPPYSAGAK 392 Query: 307 KD----KDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIVL 360 + ++ + + ++G S G L+ G V+ Sbjct: 393 SENDNNQNLSHPKLERLVYEKYGKNSTSRSVGQTTRDTLIQSIRMASDVVKDKGVLGFVV 452 Query: 361 SSSPLFNGRAGS 372 + + + A Sbjct: 453 NGGFIDSKSADG 464 >gi|168179585|ref|ZP_02614249.1| modification methylase family protein [Clostridium botulinum NCTC 2916] gi|182669821|gb|EDT81797.1| modification methylase family protein [Clostridium botulinum NCTC 2916] Length = 577 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y I+ Sbjct: 2 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221 + TP+++ + ++ +D + DP+CG G L Sbjct: 53 -----GIKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103 Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270 ++ + + I + + + + ++I L Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 N ++ L +D+ F + NPP+ +V+KE+ ++G Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKRKYGYVYKD 215 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 D S F ++ N N + + S + + +R++L EN I I Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267 Query: 391 VALPTDLFFR------TNIATYLWILSNR 413 + F+ I + + Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291 >gi|217032483|ref|ZP_03437975.1| hypothetical protein HPB128_156g13 [Helicobacter pylori B128] gi|216945829|gb|EEC24450.1| hypothetical protein HPB128_156g13 [Helicobacter pylori B128] Length = 928 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 43/372 (11%), Positives = 93/372 (25%), Gaps = 53/372 (14%) Query: 36 LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 L + L+ R + + ++ + L Sbjct: 71 LKMIFDKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHIITKP----------IFDALF 120 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 N +N + + L+ LY+ K + + + Sbjct: 121 GDNIQNPIAKALDKMVQK----LSTLGLQGETKDLKN---LYESVKTEATHAKSQKSQQE 173 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211 + N+Y + + SE TP +VV + T++D Sbjct: 174 L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 232 Query: 212 PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 P GTG F+ + + K ++ ++ + + + D Sbjct: 233 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 292 Query: 270 RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWE 306 KNI +L KD + + NPP+ + Sbjct: 293 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKDIKDTLANQNIRVIIGNPPYSAGAK 352 Query: 307 KD----KDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIVL 360 + ++ + + ++G S G L+ G V+ Sbjct: 353 SENDNNQNLSHPKLERLVYEKYGKNSTSRSVGQTTRDTLIQSIRMASDVVKDKGVLGFVV 412 Query: 361 SSSPLFNGRAGS 372 + + + A Sbjct: 413 NGGFIDSKSADG 424 >gi|255284442|ref|ZP_05348997.1| type I restriction-modification system, M subunit [Bryantella formatexigens DSM 14469] gi|255265027|gb|EET58232.1| type I restriction-modification system, M subunit [Bryantella formatexigens DSM 14469] Length = 114 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%) Query: 2 TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52 T+ L IW A++L G DF +L C P + Sbjct: 63 TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMF----SCEYRPYK 109 >gi|310823755|ref|YP_003956113.1| hypothetical protein STAUR_6529 [Stigmatella aurantiaca DW4/3-1] gi|309396827|gb|ADO74286.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 526 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 78/257 (30%), Gaps = 42/257 (16%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 E L+ RF + TP +V L L D ++ DP CG G Sbjct: 17 EEALVHRFPGLDRRVLGAYYTPASLVERTLGLALTHLD-------SGPLSIVDPACGAGA 69 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 FL+ A ++ P G E+ +C A R S + Sbjct: 70 FLSAA----------ARLRPEANLLGLEVTAPAAQLCQA------------RVPSAKVFV 107 Query: 279 GSTLS---KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 G L + L + NPP+ KD L P + Sbjct: 108 GDALRGGLEPLLTHIPAAHQELWVGNPPYNGTSPVLKDRPAYARLRSLLPVALPSGTSLR 167 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 D F + +A G A + SS L + +R+ LL+ + +V Sbjct: 168 D-DFAFFLLVAAHRLTTRP--GVLAFITPSSLL----DAFLYAPLRQALLDMLKLRQVVD 220 Query: 393 LPTDLFFRTNIATYLWI 409 L F T + T + + Sbjct: 221 LGAGAFANTQVRTCITV 237 >gi|115374556|ref|ZP_01461836.1| N-6 DNA Methylase family [Stigmatella aurantiaca DW4/3-1] gi|115368426|gb|EAU67381.1| N-6 DNA Methylase family [Stigmatella aurantiaca DW4/3-1] Length = 565 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 78/257 (30%), Gaps = 42/257 (16%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 E L+ RF + TP +V L L D ++ DP CG G Sbjct: 56 EEALVHRFPGLDRRVLGAYYTPASLVERTLGLALTHLD-------SGPLSIVDPACGAGA 108 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 FL+ A ++ P G E+ +C A R S + Sbjct: 109 FLSAA----------ARLRPEANLLGLEVTAPAAQLCQA------------RVPSAKVFV 146 Query: 279 GSTLS---KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 G L + L + NPP+ KD L P + Sbjct: 147 GDALRGGLEPLLTHIPAAHQELWVGNPPYNGTSPVLKDRPAYARLRSLLPVALPSGTSLR 206 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 D F + +A G A + SS L + +R+ LL+ + +V Sbjct: 207 D-DFAFFLLVAAHRLTTRP--GVLAFITPSSLL----DAFLYAPLRQALLDMLKLRQVVD 259 Query: 393 LPTDLFFRTNIATYLWI 409 L F T + T + + Sbjct: 260 LGAGAFANTQVRTCITV 276 >gi|325104318|ref|YP_004273972.1| N-6 DNA methylase [Pedobacter saltans DSM 12145] gi|324973166|gb|ADY52150.1| N-6 DNA methylase [Pedobacter saltans DSM 12145] Length = 1812 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 96/314 (30%), Gaps = 66/314 (21%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L + ++ L++ + + F TP Sbjct: 49 VLNPVENEIDINHWRKTEHDLFPLTQELHQLLKENSEDDKQYRKYVDSMKSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V+ ++ L D I +P+ G G F+ + + ++ + Sbjct: 109 PKVIDAISSALRDNGLH--------IDKFLEPSAGIGSFIQSFSENQKASVTAYEKDLLT 160 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 ++L PE + I E P R+ + + SN P Sbjct: 161 GKILKQLYPE------INIRINGFEEIPEREQN-----------------TYDVIASNIP 197 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 FG D + E S + FL K GG A + Sbjct: 198 FGDTSVFDLSYSRSRNSAKEQ-------AARSIHNYFFL-----KGADMLREGGLLAYIT 245 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417 S L + + IRR L++++ + ++V LP +LF T + + L IL +E Sbjct: 246 SQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKE 301 Query: 418 RRGKVQLINATDLW 431 L + DL+ Sbjct: 302 N-----LTDREDLF 310 >gi|260662346|ref|ZP_05863241.1| methylase [Lactobacillus fermentum 28-3-CHN] gi|260553037|gb|EEX25980.1| methylase [Lactobacillus fermentum 28-3-CHN] Length = 921 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 60/224 (26%), Gaps = 55/224 (24%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L + + + + + ++E + E T + +H Sbjct: 286 DELRALLLEHASADFDWSQISPTIFGAVFESTL---NPETRRQGGMHYTSIENIHKLIDP 342 Query: 191 LLDPD-----DALFKESPGMIR--------------TLYDPTCGTGGFLTDAMNHVADCG 231 L + + + K T DP CG+G FLT+ + + Sbjct: 343 LFLNELRTQLEDIKKLKQPATVKRRAAAFQDKLAGLTFLDPACGSGNFLTETYLSLRELE 402 Query: 232 SH-----------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS- 273 + I +G E+ +V + I + Sbjct: 403 NDAIRLIYGDQNMLALEKQIIKVSIQQFYGFEINDFAVSVGKTALWIAESQMMEETKSIV 462 Query: 274 ------------KNIQQGSTL---SKDLFTGKRFHYCLSNPPFG 302 NI +G+ L +L + +Y + NPPF Sbjct: 463 YTNIDFLPLKTYTNITEGNALRFSWSELVPANQLNYIIGNPPFN 506 >gi|197301283|ref|ZP_03166368.1| hypothetical protein RUMLAC_00014 [Ruminococcus lactaris ATCC 29176] gi|197299601|gb|EDY34116.1| hypothetical protein RUMLAC_00014 [Ruminococcus lactaris ATCC 29176] Length = 939 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 77/281 (27%), Gaps = 72/281 (25%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 Y+ FSD + I + I L LL K +NF ++ P + ++E Sbjct: 281 YVNGGLFSDESIEIPP---LTEEIKEL----LLTKASENFDWSDISPT-----IFGAVFE 328 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKESPGMIR-------- 207 + E T +H L D + K + Sbjct: 329 STL---NPETRRAGGMHYTSISNIHKVIDPLFLEDLKTEFQEILKIQVQRTKIKRLDEFQ 385 Query: 208 ------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244 DP CG+G FLT+ + + + +G Sbjct: 386 NKIASLKFLDPACGSGNFLTETYLSLRRLENEVIREKVGGQMTLGDVHNPIRVSIQQFYG 445 Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTL---SKDLF 287 E+ V + I D + NI +G+ L D+ Sbjct: 446 IEINDFAVTVAKTALWIAESQMMEETKNIVYGFNDDFLPLKTYVNITEGNALRLDWDDVV 505 Query: 288 TGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGP 326 Y + NPPF K ++ K N + GR Sbjct: 506 PASELSYIMGNPPFVGHKNVSLEQKNDMKRIFNNKQGRLDY 546 >gi|153871657|ref|ZP_02000772.1| type II restriction enzyme, methylase subunit [Beggiatoa sp. PS] gi|152071880|gb|EDN69231.1| type II restriction enzyme, methylase subunit [Beggiatoa sp. PS] Length = 508 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 97/334 (29%), Gaps = 108/334 (32%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDPTCGTG 217 + + TP +V + P K + + DP CG+G Sbjct: 2 KKAGGVYYTPSYIVDYIVKQTIGPLLERQKVNAKESIKLLGHGKHSASRLKILDPACGSG 61 Query: 218 GFLTDAMNHVADCG-------------------------------SHHKIPPILVPHGQE 246 FL A D S K + +G + Sbjct: 62 SFLLGAYQFFLDWYLEQYLQEPAKWVKGKKPRLYHASGGLWKLTVSERKRILLSHIYGVD 121 Query: 247 LEPETHAVCVAGMLIRRLESD-------------PRRDLSKNIQQGSTLSKDLFTGKR-- 291 ++ + V +L++ LE + D++ NI+ G++L D F K+ Sbjct: 122 IDLQAVEVTKLSLLLKVLEDEQSVISQLSLFKERVLPDINNNIRCGNSLIGDEFYQKKQL 181 Query: 292 ----------------------------FHYCLSNPPF--GKKWEKDKDAVEKEHKNGEL 321 F + NPP+ + +K + +K+ + Sbjct: 182 ELIDAETQYRVNAFDWKNEFSEVMQAGGFDAVIGNPPYVRIQTLKKWTPLEVEFYKHQYI 241 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 S G+ + K N G +L + L GE ++R+ + Sbjct: 242 A--------ASKGNYDLYVLFVEKGLSLLNERGYLGFILPNKFLLT---DYGE-KLRQLI 289 Query: 382 LENDLIEAIVALPT----DLFFRTNIATYLWILS 411 E EA+V L +F + T L LS Sbjct: 290 SEQ---EALVRLVDFGHEQVFEQATTYTCLLFLS 320 >gi|88603162|ref|YP_503340.1| hypothetical protein Mhun_1909 [Methanospirillum hungatei JF-1] gi|88188624|gb|ABD41621.1| hypothetical protein Mhun_1909 [Methanospirillum hungatei JF-1] Length = 147 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 12/121 (9%), Positives = 27/121 (22%), Gaps = 40/121 (33%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85 + + +L ++ + + A+ E +G SF Sbjct: 1 MDASQYKDYVLVLLFVKYVSDKYAGDKKALIE----------------VPSGGSFS---- 40 Query: 86 YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 + L + + I +L +A L + Sbjct: 41 -DMVALKG--------------NPEIGD-----KINQIIGKLAEANELKGVIDQAPDAAW 80 Query: 146 H 146 H Sbjct: 81 H 81 >gi|332308696|ref|YP_004436546.1| N-6 DNA methylase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176025|gb|AEE25278.1| N-6 DNA methylase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 4626 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 74/273 (27%), Gaps = 58/273 (21%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + F TP VV + +YDP+ G G F Sbjct: 3089 EYSEIKASALTAFYTPVPVVQGVWK--------SLEHMGFEGGRVYDPSMGLGNFFGLMP 3140 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +A G EL+ T + S I + + K Sbjct: 3141 ERLAANSK---------LAGGELDTITAGIAK-------------FLQSDVIVKNTGFEK 3178 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 L F SN PFG F P + ++ + Sbjct: 3179 SLLPADYFDVMTSNIPFGN--------------------FKIHDPAYNKHNLNIHNYFIA 3218 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A + + S + R ++ + + + LP D+F T Sbjct: 3219 KSLDTIKPGGVVAYITT-----TYTMDSQSKKARELFYKSSDLVSAIRLPNDVFKKHAGT 3273 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 N+ L I R E G I+A S+ Sbjct: 3274 NVNADLLIFRKRHDHEPAGDESWIDAFHYNKSM 3306 >gi|313125635|ref|YP_004035905.1| type i restriction-modification system methyltransferase subunit [Halogeometricum borinquense DSM 11551] gi|312292000|gb|ADQ66460.1| type I restriction-modification system methyltransferase subunit [Halogeometricum borinquense DSM 11551] Length = 719 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 55/344 (15%), Positives = 105/344 (30%), Gaps = 50/344 (14%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 ++ L L +K Y Y NT S + L +++ R ++ ++ Sbjct: 45 LDEPLKVLARQASLNLLLKSTLYEHYQKNTPNTSFNELDASDAREAFQTA----RESTGD 100 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 I +A + A L + + L P + ++E + E Sbjct: 101 IAFTEYLLDELAWITSAEDLSSVLD--ARQYLLNSDNPAETIGKLFEQI---TPQESRRK 155 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP ++ + + T+ DP G G A S Sbjct: 156 LGQFRTPPEIADIMATWCVQESTD----------TVLDPGVGAGALSAPAYKRKLKLSSD 205 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRF 292 + HG +L + + + N+Q G L Sbjct: 206 ASL---ATMHGIDLNELALVMGATTLRL------LDHGGPHNLQTGDFLELSPEDIDAEV 256 Query: 293 HYCLSNPPFGKKWEKDKDAVEK-----EHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 +SNPP+ + E ++ + E + G +S S ++ + E Sbjct: 257 DAVISNPPYSRHHELSEEYKTRVNTQIEQELGCD---------VSALSPMY-AYFYFHAE 306 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + GGRA+ + S L S ++++L + A+V Sbjct: 307 KFLSPGGRASYITPSEFLETNYGES----LKQYLTNEFNLNALV 346 >gi|332884848|gb|EGK05103.1| hypothetical protein HMPREF9456_03016 [Dysgonomonas mossii DSM 22836] Length = 1864 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 72/481 (14%), Positives = 138/481 (28%), Gaps = 85/481 (17%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKAGLLYKI--- 136 YN + + + L+ + + IF + F A L A I Sbjct: 3 YNKRTHLHQNIDAIKLALRLDKEQKKATPKEREIFAKYSGFGGIKAILNPADKPEDIERW 62 Query: 137 ----CKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 + F + ELH + +Y+ R S S F TP+ V+ Sbjct: 63 PKSEIELFPLVRELHEVLRENSPTPEVYK---RYVSSLKSSILTAFYTPKPVIDALA--- 116 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 K+ +P+ GTG F++ + Sbjct: 117 -----DALKDRGITPTRFLEPSAGTGAFISSFKEIAPEAKVTSFEK-------------- 157 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 +L ++ S + I+ + + + F SN PFG D Sbjct: 158 ------DLLTGKILSHLYPEDKVRIEGYEKM--EGRYSQHFDVIASNIPFGDVSVFDPLL 209 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 E +P + + + K + GG A + S L + + Sbjct: 210 SNHE------------IPAVKQSTQAIHNYFFVKSVMSAREGGIIAFITSQGVLNSEQN- 256 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQ--LIN 426 IR +L++ + + + LP +LF T + + L +L + Q I Sbjct: 257 ---KPIREYLMDTCDVVSAIRLPNNLFSDHAGTEVGSDLIVLQRNNKNILPSQRQQNFIE 313 Query: 427 AT---------DLWTSIRNEGKKRRII-------------NDDQRRQILDIYVSRENGKF 464 + +L+ + R I ++ I F Sbjct: 314 SRKLSNGISINNLFRDFNRVIQTRSKIDTDPYGKPAIVFTHEGGIDGIAKDLRQMLKEDF 373 Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 S+ LD + + + L L+ + + +E K + D+ P ++ Sbjct: 374 SQHLDLQRYQSHAQESLAQLQSRIEVTEAIKPAIEIKPEQSKQQQTYSGTLFDMDDPAIK 433 Query: 525 Q 525 + Sbjct: 434 K 434 >gi|253578091|ref|ZP_04855363.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39B_FAA] gi|251850409|gb|EES78367.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39BFAA] Length = 2587 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 58/407 (14%), Positives = 110/407 (27%), Gaps = 80/407 (19%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 + +K L + + E + +N + + F +N Sbjct: 967 EKIGYIQKLLEQEKTELLPEEKTEAPAVDRHNF------RINDDAIG--VGGAKEKFRNN 1018 Query: 111 AKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLI-R 164 AI + + + +A E+ +L + + G+ + D +Y L Sbjct: 1019 MAAINLLHELEIENRLATPEEQEVLSQYVG-WGGLSMAFDEHNAAWAEEFKELYASLSPE 1077 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F TP V+ L S G + +P+CGTG F Sbjct: 1078 EYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGTGNFFGLLP 1129 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + HG E++ T + + NI K Sbjct: 1130 ESMQ----------NSKLHGVEIDSLTGRIAK------------QLYQKANIAIE-GFEK 1166 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F L N PFG+ D ++ + Sbjct: 1167 TNLPDDHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------------FFA 1206 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG + S + E+R+++ + + + LP + F T Sbjct: 1207 KALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFKANAGT 1261 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 + + + IL R +V I + G + Sbjct: 1262 EVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 1302 >gi|226950520|ref|YP_002805611.1| modification methylase family protein [Clostridium botulinum A2 str. Kyoto] gi|226843643|gb|ACO86309.1| modification methylase family protein [Clostridium botulinum A2 str. Kyoto] Length = 577 Score = 51.5 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y I+ Sbjct: 2 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221 + TP+++ + ++ +D + DP+CG G L Sbjct: 53 -----GIKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103 Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270 ++ + + I + + + + ++I L Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 N ++ L +D+ F + NPP+ +V+KE+ ++G Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKRKYGYVYKD 215 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 D S F ++ N N + + S + + +R++L EN I I Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267 Query: 391 VALPTDLFFR------TNIATYLWILSNR 413 + F+ I + + Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291 >gi|167760883|ref|ZP_02433010.1| hypothetical protein CLOSCI_03271 [Clostridium scindens ATCC 35704] gi|167661486|gb|EDS05616.1| hypothetical protein CLOSCI_03271 [Clostridium scindens ATCC 35704] Length = 2488 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 68/254 (26%), Gaps = 61/254 (24%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F TP V+ T+ +P+CGTG F Sbjct: 1267 EEYRAAMESTLTAFYTPPVVIKAMYE--------ALDHMGFSGGTILEPSCGTGNFFGLI 1318 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + HG E++ T + + +I Sbjct: 1319 PDRM----------AGSTLHGVEIDSLTGRIAK------------QLYQKASIAIE-GFE 1355 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHL 342 + F + N PFG R+ + L + Sbjct: 1356 QTKLPDDHFDVIVGNVPFG-------------DFKVNDSRY--------NAQKFLIHDYF 1394 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399 K GG A + S + E+R+++ + + + LP + F Sbjct: 1395 FVKALDKVRSGGVVAFITSKGTMDKTSP-----EVRKYIAQRAELLGAIRLPDNTFRANA 1449 Query: 400 RTNIATYLWILSNR 413 T + + + L R Sbjct: 1450 GTEVTSDILFLQKR 1463 >gi|153815158|ref|ZP_01967826.1| hypothetical protein RUMTOR_01383 [Ruminococcus torques ATCC 27756] gi|145847726|gb|EDK24644.1| hypothetical protein RUMTOR_01383 [Ruminococcus torques ATCC 27756] Length = 286 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 72/249 (28%), Gaps = 45/249 (18%) Query: 92 GSTNTRNNLESYIASFSDNAK--AIFEDF------DFSSTIARL---EKAGLLYKICKNF 140 + + + + + ++ DF S+ + + E+ KI K + Sbjct: 52 KNEDIKKQFLKTFNQLTYQHRSWDVWRDFIIMFACSLSNPVDKFHYEEREKRYLKIIKKY 111 Query: 141 SGIE-------------LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + E + + +I+ L + + F TP V L Sbjct: 112 NKREQEQFPELAAYVVMALEENPEQDFLGSIFMEL-----NLGDKSNSQFFTPYHVCELM 166 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQ 245 + +D + T+ D CG G L A+N + Q Sbjct: 167 AKV--TEEDVVAVVKEKGYITINDSCCGAGATLIAAINEARKQLEKVNLNFQNHVLVVAQ 224 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 +++ +C + + + + I+ G ++ + T N F + Sbjct: 225 DIDEIVALMCYIQLSLLGV--------AAYIKVGDVFTQPMSTDDNGE----NYWFTMMY 272 Query: 306 EKDKDAVEK 314 D + + Sbjct: 273 FSDVWTMRR 281 >gi|121605739|ref|YP_983068.1| hypothetical protein Pnap_2846 [Polaromonas naphthalenivorans CJ2] gi|120594708|gb|ABM38147.1| hypothetical protein Pnap_2846 [Polaromonas naphthalenivorans CJ2] Length = 83 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 87 SLSTLGSTNTRN----NLESYIASFSDNAKAIFEDFDFSSTIARL 127 +L L S + + E Y+ FS N I E+F F + ++ L Sbjct: 36 TLRDLKSRGSHQQLLADFEDYLNGFSPNVLDILENFKFRNQLSTL 80 >gi|312114179|ref|YP_004011775.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100] gi|311219308|gb|ADP70676.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100] Length = 253 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 32/132 (24%) Query: 153 RVMSNIYEHLIRRFGSE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + IYE + +P + + +L +S ++ D Sbjct: 89 DHLGEIYE------AEGGSERAMSQYFSPMPLCRMMAFML-------IDDSTPERASIAD 135 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P CG+G L + P G +L+ + +L R ++S Sbjct: 136 PACGSGRMLMAC----------IPLRPQGYFFGVDLDRTCAKMAALNLLWRNVDST---- 181 Query: 272 LSKNIQQGSTLS 283 I G TL Sbjct: 182 ----IIWGDTLR 189 >gi|159030874|emb|CAO88553.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 667 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 22/200 (11%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + ++ YE + + ++ E + TP VV + + F + Sbjct: 330 TDFRNKMNREDIVIRFYEDFLAAYKPQMREKRGVYYTPEPVVSYIVRSVDELIKDKFNKP 389 Query: 203 PG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----------------KIPPILVP 242 G + DP CGTG FL + + + Sbjct: 390 LGIADPEVMILDPACGTGTFLLWVFQLIHKRFEENPVALTAGLADKSWSGYVSERLLPRI 449 Query: 243 HGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 G EL +A+C G+ + + +TL ++ L+ P Sbjct: 450 FGFELLMAPYAICHLKLGLFLEETGYQFASGKRLGVYLINTLEDIKLREEKQQLTLALPQ 509 Query: 301 FGKKWEKDKDAVEKEHKNGE 320 + ++ A + KN Sbjct: 510 MEELIAEEAKAGSRIKKNEP 529 >gi|18311571|ref|NP_563505.1| site specific DNA-methyltransferase [Clostridium perfringens str. 13] gi|18146255|dbj|BAB82295.1| probable site specific DNA-methyltransferase [Clostridium perfringens str. 13] Length = 494 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 50/246 (20%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP V ++D G TL+DP CG + D Sbjct: 23 REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S I I ++ + I + G Sbjct: 67 SDLGIKTIG----------------MDLIKYKNNYICEFKKGNFINYYCSQKNTKTWG-- 108 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPP+ ++ KN GL + +F+ + +K + Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409 G ++ + S F + +R +L I I P LF + T + I Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214 Query: 410 LSNRKT 415 L K Sbjct: 215 LRKGKE 220 >gi|331091942|ref|ZP_08340774.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402841|gb|EGG82408.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium 2_1_46FAA] Length = 2591 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 57/371 (15%), Positives = 109/371 (29%), Gaps = 75/371 (20%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 AV +K I + +F + LG + + I + S Sbjct: 937 AVPKKQNQTKEDTIPQQKEHAEERNNF----RITDDALGIGSPKEKFRGNIEAIS----- 987 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-----RFGS 168 + + + + +A E+ +L + + G+ D + S Y+ L + Sbjct: 988 LLKKLEAENHLATAEEQEILSRYVG-WGGLSAAFDDRKE-EWSQEYQELKSLLSESEYKE 1045 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 S F TP V+ +L S G + +P+CG G F+ + Sbjct: 1046 ARSSTLNAFYTPPTVIKAMYQIL-----ENMGLSTG---NVLEPSCGVGNFMGLVPESM- 1096 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + +G EL+P + + + KN + K + Sbjct: 1097 ---------QNIQMYGVELDPISGKIA-------------GQLYQKNRIKVKGFEKTEYP 1134 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 F + N PFG D+ S++ + K Sbjct: 1135 ESFFDCVIGNVPFGNYQVSDRKY--------------------DKYSLMIHDYFIVKSLD 1174 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIAT 405 GG A++ SS + ++R E + + LP + F T++ + Sbjct: 1175 LIRPGGVVAVITSSRTM-----DKESEKVRLQFAEKADLLGAIRLPENAFRKNAGTDVVS 1229 Query: 406 YLWILSNRKTE 416 + R Sbjct: 1230 DILFFQKRDRA 1240 >gi|301513523|ref|ZP_07238760.1| putative restriction-modification protein [Acinetobacter baumannii AB058] Length = 128 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 14/136 (10%) Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406 GGR A+V+ LF +R++L EN ++A+V+LP ++F + T Sbjct: 2 KATKKGGRMALVVPEGFLFKAALAP----VRKYLFENAQLKAVVSLPKEVFLPYAKVKTN 57 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + +N V N T+ S+ + RR I+++ + + + S Sbjct: 58 ILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF---RRKIDENDLKNL-----DFADLNKSD 109 Query: 467 MLDYR-TFGYRRIKVL 481 Y G+ ++ Sbjct: 110 FDKYYNELGFLKVNPE 125 >gi|227544177|ref|ZP_03974226.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A] gi|300908172|ref|ZP_07125638.1| adenine-specific methyltransferase [Lactobacillus reuteri SD2112] gi|227185849|gb|EEI65920.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A] gi|300894599|gb|EFK87955.1| adenine-specific methyltransferase [Lactobacillus reuteri SD2112] Length = 277 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 44/267 (16%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + +IR+ + + TP + + L+ I+T++DP GT Sbjct: 26 FLKVIRKDAIQANHQM----TPDTIGLIMAFLI------EKVTKIKEIKTVFDPAVGTAN 75 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 LT MN + +V +G + + + V ++ L + Sbjct: 76 LLTTVMNQLK-----VNGDKDIVGYGIDNDEDMLGVASVNTELQHLNVKLYHQDAVT--- 127 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + +S+ P G E+ R G S L Sbjct: 128 -------ALDISQCDLAISDLPIGY-------YPLDENAKNYQTRAKEGH---SYVHHLL 170 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + N L+ G + L S LF + +W+ ++ ++ LP +LF Sbjct: 171 IEQSMNYLKP-----GAFGVFLVPSSLFQTKESQS---FVKWIQSVAYLQGLINLPAELF 222 Query: 399 FRTNIATYLWILSNRKTEERRG-KVQL 424 N + +L + + ++ KV L Sbjct: 223 ANPNAQKSILLLQRQGGDSKQAVKVLL 249 >gi|227539388|ref|ZP_03969437.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240701|gb|EEI90716.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1748 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 68/315 (21%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L I ++ L++ + + F TP Sbjct: 49 VLNPIENKIDINHWRKTEHDLFPLTQELHQLLKENSEDDKQYRRYVDSMKSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V+ ++ L D I +P+ G G F+ + Sbjct: 109 PKVIDAISSALRDNGLH--------IDKFLEPSAGIGSFIQSFSE---------NQTASV 151 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNP 299 + ++ L+ + + NI+ + + + SN Sbjct: 152 TAYEKD-------------LLTG-KILKQLYPDSNIRI-NGFEEIPEREQNSYDIIASNI 196 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG D + E S + FL K GG A + Sbjct: 197 PFGDTSVFDLSYSRSRNSAKEQ-------AARSIHNYFFL-----KGADMLREGGLLAYI 244 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTE 416 S L + + IRR L++++ + ++V LP +LF T + + L IL + Sbjct: 245 TSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAK 300 Query: 417 ERRGKVQLINATDLW 431 + L + DL+ Sbjct: 301 KN-----LTDREDLF 310 >gi|282897493|ref|ZP_06305494.1| DNA modification methyltransferase-related protein [Raphidiopsis brookii D9] gi|281197588|gb|EFA72483.1| DNA modification methyltransferase-related protein [Raphidiopsis brookii D9] Length = 953 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 78/265 (29%), Gaps = 65/265 (24%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT-PRDVVHLATALLLDPDDALFKESPG-- 204 V + ++E + + E T P D+ + +L P + Sbjct: 281 SKVEPAIFGTLFESSMGK---EERHALGAHYTNPADIQKVVLPTILRPWQQRIDAATKLN 337 Query: 205 ---------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------------ 237 + + DP CG+G FL A + ++ Sbjct: 338 ELLALRQELINFKVLDPACGSGNFLYVAYREIKRLEANLLNKIHENFSLRSISNIGTLSL 397 Query: 238 -PILVPHGQELEPETHAVCVAGMLI----------RRLESD------------PRRDLSK 274 +G +++P + ++I + + P +L + Sbjct: 398 VKTNQFYGIDIKPFAVELAKVTLMIAKKLALDEENKLINVAQMSLPLELDQALPLDNLDQ 457 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 NI+ L D + + NPP+ K + ++ E + + R+ +P Sbjct: 458 NIRCDDALFCDW---VKADAIIGNPPYQSKNKMQQEYGED-YVSQVRERYKE-VP--GRA 510 Query: 335 SMLFLMHLANKLELPPNGGGRAAIV 359 ++ + + GGRA + Sbjct: 511 DYC--VYWFRRTHDELSKGGRAGLF 533 >gi|288801314|ref|ZP_06406768.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331697|gb|EFC70181.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] Length = 588 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 96/295 (32%), Gaps = 28/295 (9%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E LL + P T+ D M +++E +I TP+ V Sbjct: 52 EDFDLLQEFVSKIHHFHPAPMTIED--MISLFEFVI---SPADRIVTGAVYTPKYVRENI 106 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQE 246 L + + + D CG GGFL + + + +G + Sbjct: 107 IETCLKIPNEHLQH-----IRVADIACGCGGFLMNVALFLHNNTGRSFYDIYQESVYGID 161 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFG 302 ++ + + + L D NI Q +TL+ + F + NPP+ Sbjct: 162 IQEYSVERTKILLSLLALLHGEDLDFDFNILQANTLNFNTTEWNQDYTHFDVIVGNPPYV 221 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 D EK + + L SD + F L N GGR + + Sbjct: 222 CSRNVDATTKEKMLQ------YEVCLSGHSDLYIPFFQIATEML----NDGGRLGFITMN 271 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 S + + + + R + + +++ +F + + T L+ L+ + + Sbjct: 272 SFIRSVNGRAVRNYFSRGIHDISILD---FRGYQVFQKKSTYTCLFFLTKNQASD 323 >gi|124004979|ref|ZP_01689822.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134] gi|123989657|gb|EAY29203.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134] Length = 504 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 29/258 (11%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + TP +V DD + + + + DP+CG G FL + + + Sbjct: 10 EEKLLGKVYTPAFIVEKIL------DDVGYIGKRILGKKILDPSCGDGQFLKEIVKRILK 63 Query: 230 CGSHHKI---PPILVPHGQELEPETHAVCVAGMLIR----RLESDPRRDLSK--NIQQGS 280 K + G +++ E +C++ + + + NIQ + Sbjct: 64 ESPSDKEAILENLSKVRGMDIDEEAIKICISDLNKLVEPYGINFPSKNVSKFDWNIQSEN 123 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TLS+ +RF + + NPP+ + + +E + R+ +D + F Sbjct: 124 TLSQIDKGRERFEFIVGNPPYIRIQH-----LSEEDRYLIQTRYEFCKSGSTDTYIAFFE 178 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFF 399 + KL G ++ ++ + +R + + I+ I LF Sbjct: 179 YCQKKLSK----NGICGLITPNTFFYTETGRI----LRSYFINERKIKQITNYKDIQLFD 230 Query: 400 RTNIATYLWILSNRKTEE 417 + + I ++ + Sbjct: 231 DATTYSAITIFDRKQNDS 248 >gi|302387900|ref|YP_003823722.1| helicase domain protein [Clostridium saccharolyticum WM1] gi|302198528|gb|ADL06099.1| helicase domain protein [Clostridium saccharolyticum WM1] Length = 2632 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 64/217 (29%), Gaps = 51/217 (23%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + DP GTG F + + + +G E++P + Sbjct: 975 NILDPALGTGNFFSVLPDSMESSK----------LYGCEIDPIPGQIAK----------- 1013 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + +IQ K F F + N PF D + + Sbjct: 1014 -HLYPNADIQVM-GFEKTAFPDHFFDMMVGNVPFNSIKVDDPRYNKHNFHIHDY------ 1065 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 F+ +K+ GG A+V S + S +RR++ + Sbjct: 1066 ----------FIAKSLDKVRP----GGMMALVTSKFTM-----DKANSSMRRYIAGKAEL 1106 Query: 388 EAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 V LP + F T T + +L R+ E + Sbjct: 1107 IGAVRLPNNAFKQVAGTEATTDILLLKKREREIVPDE 1143 >gi|298345571|ref|YP_003718258.1| methylase [Mobiluncus curtisii ATCC 43063] gi|298235632|gb|ADI66764.1| methylase [Mobiluncus curtisii ATCC 43063] Length = 949 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 57/242 (23%), Gaps = 66/242 (27%) Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 DF+ + L L + S + + I+E + E Sbjct: 274 DFEIPNFSPEL-----LGLLLDEVSRAVDW-SQISPTIFGGIFESTL---NPETRRAGGM 324 Query: 177 FMTPRDVVHLATALLL----------DPDDALFKESPGMI-----------RTLYDPTCG 215 T + +H L D DP G Sbjct: 325 HYTSPENIHKVIDPLFLDDLKAELQAIGDAEGLTPRQRTNRYRAFHERLCKMRFLDPASG 384 Query: 216 TGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEPETHAVC 255 +G FLT+ + +G E+ V Sbjct: 385 SGNFLTETYLQLRHLEDEVLSRLNAGQTAFSLAEVGASVTRVSLDQFYGIEINDFAVKVS 444 Query: 256 ---------VAG----MLIRRLESDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNP 299 A ML+ + D S +I Q + L+ D + Y L NP Sbjct: 445 EAALWISRLKANGETEMLLALGDDDFPLRESAHIVQANALTLDWNTVLPADQCSYVLGNP 504 Query: 300 PF 301 PF Sbjct: 505 PF 506 >gi|294155434|ref|YP_003559818.1| hypothetical protein MCRO_0145 [Mycoplasma crocodyli MP145] gi|291600020|gb|ADE19516.1| conserved hypothetical protein [Mycoplasma crocodyli MP145] Length = 476 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 29/242 (11%) Query: 206 IRTLYDPTCGTGGFLTDAMN-HVADCGS------HHKIPPILVPHGQELEPETHAVCVAG 258 + + D +CG G FL + + ++ + K HG E++ E C+ Sbjct: 39 KKHVIDNSCGDGRFLEEIVKTYIKEFFKIDNDLIKLKNQLEHFIHGIEIDLEECKKCINN 98 Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + + ++ +++ +I TL +++TG + + L NPP+ + D Sbjct: 99 LNL-IIKEYNIDNVNWDIIVADTLDTNIYTG-KMDFVLGNPPYVRVHNFD-----DRFSK 151 Query: 319 GELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 + RF K + LF N L ++ S +FN AG E Sbjct: 152 IKNKRF----TKKGMTDLFILFYEIGLNMLNEKGVL-----CYITPSSIFNSFAG---LE 199 Query: 377 IRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 R+++++ L+++++ +F + T + L T+E + + I Sbjct: 200 FRKFIIQKKLLKSVIDYKHYQVFESVSTYTTILKLDKNNTDENINYFSYNDHNQQYDFID 259 Query: 436 NE 437 Sbjct: 260 KL 261 >gi|317153587|ref|YP_004121635.1| hypothetical protein Daes_1879 [Desulfovibrio aespoeensis Aspo-2] gi|316943838|gb|ADU62889.1| hypothetical protein Daes_1879 [Desulfovibrio aespoeensis Aspo-2] Length = 1036 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 58/433 (13%), Positives = 117/433 (27%), Gaps = 118/433 (27%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFS 141 +L L T + L + + F + S + RL L + + Sbjct: 273 NLKNLDGLATFDGLMDSLRRA--------DQF-YDSGLFRLVDNDPLGIRISDDVLQGII 323 Query: 142 GIELHP------DTVPDRVMSNIYEHLIRRFGSEVS------------EGAEDFMTPRDV 183 +P V +V+ IYE + E TP + Sbjct: 324 AELYYPLSPYTFAVVETKVLGEIYEQFLGEVIIVAGSTIEIESKPEVRESGGVVPTPSFI 383 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------------ 231 A L P A + T+ D CG+G FL A +++ Sbjct: 384 ADTIVARTLGPLLAGKSPEELLHFTVADICCGSGIFLLSAYDYLLGHYLDWYVAGGPGKH 443 Query: 232 -----------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + + G +++P + +L++ +E + L + Sbjct: 444 AGRTIYQVGKNLWRLTFDEKRRILLAHMRGVDIDPNAVEIAQFSLLLKLIEDESEAALEE 503 Query: 275 ---------------NIQQGSTL-----------------------------SKDLFTGK 290 I+ G++L D Sbjct: 504 YVRRMKHAALPALDDYIRCGNSLVSTAEWEAACGPLPAMLHDAINPFGWEEEFADEMADG 563 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLEL 348 F + NPP+ + + +E + + + LF+ ++ Sbjct: 564 GFDVVVGNPPY-IRIQNMVAYSAQEVEFYHTTNAPYSTAQQDNFDKYALFIERALGLIKD 622 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI--ATY 406 GR +++ + + +R L + ++E IV + F I T Sbjct: 623 ----NGRLGVIVPNKFM----TIRSGRALRGLLTRSPILEYIVHFGSKQVFGQGITNYTC 674 Query: 407 LWILSNRKTEERR 419 + ++ E+ R Sbjct: 675 ILVMDRSGHEQVR 687 >gi|317009316|gb|ADU79896.1| hypothetical protein HPIN_03300 [Helicobacter pylori India7] Length = 1067 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 45/308 (14%), Positives = 85/308 (27%), Gaps = 36/308 (11%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ IA D L+ LY+ K + ++ Sbjct: 261 GDNIQNPIAKALDKMVQKLATLGLEGETKDLKN---LYESVKT-EALHAKSQKSQQELIK 316 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 317 NLYNTFFKVAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 376 Query: 216 TGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ + + K ++ ++ + + + D Sbjct: 377 TGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSSLKFF 436 Query: 274 KNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPF--GKKWEKD 308 KNI +L KD + + NPP+ G K E D Sbjct: 437 KNIALTDSLDFYEEKNDKGVFAFFEDLKENKEIKDTLADQNIRVIIGNPPYSAGAKSEND 496 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGGRAAIVLSSSP 364 + + + + G S + L+ G V++ S Sbjct: 497 NNQNLSHPELEKRVKEKYGKNSSSKNNGGTTRDTLIQSIYLASELLKDKGVLGFVVNGSF 556 Query: 365 LFNGRAGS 372 + + A Sbjct: 557 IDSKSANG 564 >gi|256960869|ref|ZP_05565040.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256951365|gb|EEU67997.1| conserved hypothetical protein [Enterococcus faecalis Merz96] Length = 2586 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 68/253 (26%), Gaps = 59/253 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S S T V+ + +PG T+ +P+ G G F Sbjct: 1026 GEYQSAQSTVLNAHYTSPTVIQAIYNAV-----EQMDFTPG---TVLEPSMGIGNFFGML 1077 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +A +G EL+ T + + +I Sbjct: 1078 PEKLAAAK----------LYGVELDDLTGRIAR------------QLYQKADITV-DGFE 1114 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG DK + +++ + Sbjct: 1115 RTDHPDDFFDLAVGNVPFGSYQVHDKRYDRQ--------------------NLMIHDYFI 1154 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A + + + S+ R L + + V LP++ F Sbjct: 1155 TKTLDKVRPGGIVAFITTKGTM-----DKKNSKAREALAQKADLLGAVRLPSNAFKANAG 1209 Query: 401 TNIATYLWILSNR 413 T + T + R Sbjct: 1210 TEVTTDILFFQKR 1222 >gi|304386986|ref|ZP_07369244.1| methylase [Neisseria meningitidis ATCC 13091] gi|304338943|gb|EFM05039.1| methylase [Neisseria meningitidis ATCC 13091] Length = 270 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 35/139 (25%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250 DP CG G FL A + + + HG E++ Sbjct: 88 QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147 Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295 T + M ++ + + R + + I ++L + Y Sbjct: 148 TVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAEIIHANSLRTPW---QAADYI 204 Query: 296 LSNPPFGKKWEKDKDAVEK 314 NPPF + K+ Sbjct: 205 FGNPPFIGSTYQTKEQKND 223 >gi|237727382|ref|ZP_04557863.1| conserved hypothetical protein [Bacteroides sp. D4] gi|255008834|ref|ZP_05280960.1| type I restriction enzyme, M subunit [Bacteroides fragilis 3_1_12] gi|313146578|ref|ZP_07808771.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|229434238|gb|EEO44315.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|313135345|gb|EFR52705.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 239 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 31/177 (17%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +Y + G + + F TP + L + + + DP Sbjct: 85 DAFGELYMAYCSKPGQQAN---GQFFTPSHICELMVMCAAGKKET--------GQRMGDP 133 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L H P G+++ + V ML+ + Sbjct: 134 TCGSGRLLLAYHAH----------NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH- 182 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328 +L FT + + P G + E + E GRF + Sbjct: 183 -------DSLQPKAFTDG-WKVNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231 >gi|254414560|ref|ZP_05028326.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] gi|196178790|gb|EDX73788.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420] Length = 1047 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 97/340 (28%), Gaps = 66/340 (19%) Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPD----TVPDRVM 155 +YI + + K +F + +++++ A L ++ + + T D + Sbjct: 239 GTYIPATNPFLKRLFNTIVETDAVSQIDWAIDDLVQLLAQVDMSSILENFGQRTRQDDPV 298 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK------------ESP 203 + YE + + + + + TP VV + F ++ Sbjct: 299 VHFYETFLAAYNKALRKSRGVYYTPEPVVSFIVRSVDAILKERFNLPLGLADNTKDPKTQ 358 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHA 253 + DP GTG FL + + + + G EL +A Sbjct: 359 KPRVQILDPATGTGTFLYEVIKQIYRNLEDIGMANQWDSYVEENLLNRLFGFELLMAPYA 418 Query: 254 VC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---------------------GK 290 + G+ ++ L + I +TL + L Sbjct: 419 IAHLKLGLALQELGYQFKGKQRLGIYLTNTLDEALKKSEILFGQFVAQEANEASTVKQDT 478 Query: 291 RFHYCLSNPPFGKKWEKDKDAVE---KEHKNGELGRFGPGLPKISDGSML----FLMHLA 343 L NPP+ + + +++ + PK + F Sbjct: 479 PVMVVLGNPPYSYESLNTGKWISGLVRDYYKVDNKDLREKNPKGLQDDYVKFIRFAQWRI 538 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 G G A + + L S +R+ L++ Sbjct: 539 -----ETTGYGILAFITNHGYL----KNSTFRGMRQNLMQ 569 >gi|146283521|ref|YP_001173674.1| hypothetical protein PST_3196 [Pseudomonas stutzeri A1501] gi|145571726|gb|ABP80832.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 1242 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 68/263 (25%), Gaps = 66/263 (25%) Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA- 113 V Y + A F N + T L Y+ FS NAK Sbjct: 345 VDTLYRYEDHFLDSDTALEHFADVPFLNGGLFECLDHIEDGTNKKL--YLDGFSRNAKKR 402 Query: 114 --IFEDFDFSSTIA------------RLEKAGLLYKICK--NFSGIELHPDTV----PDR 153 I F + EK L I F+ +E P Sbjct: 403 PTIPNRLFFGGEHEEDLSGAYGDKKRKKEKVRGLLHILHAYKFTIVENTPVDQEIALDPE 462 Query: 154 VMSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATA---------LLLDPDDALFK 200 ++ ++E+L+ + E + F TPR +V +L+ D Sbjct: 463 LLGKVFENLLASYNEETKTTARKQTGSFYTPRPIVEYMVDESLKSHFTGMLVKADMNEQD 522 Query: 201 ESPGM--------------------------IRTLYDPTCGTG----GFLTDAMNHVADC 230 G+ + DP CG+G G L + + Sbjct: 523 AKTGLDILFAYTEQRLTFTEKQIAKLLNAIHTCKILDPACGSGAFPMGILHKLVYIIHRL 582 Query: 231 GSHHKIPPILVPHGQELEPETHA 253 + + P++ A Sbjct: 583 DPDNSRWKQIQIDAAAKIPDSSA 605 >gi|222087283|ref|YP_002545820.1| DNA methylase [Agrobacterium radiobacter K84] gi|221724731|gb|ACM27887.1| DNA methylase [Agrobacterium radiobacter K84] Length = 546 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 37/279 (13%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + +Y +I + TP + + + D + K Sbjct: 72 HDRNYWRGTLYTLMI---SPADRRAQAAYFTPPYLANAVIDMASDHGFDIRKHD------ 122 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + DP G FL+ + + G K +G E++ + + + Sbjct: 123 VLDPAAGGAAFLSLIADRMHRAGV-PKKDIANRLNGIEIDE---RLARMSEFL--IAEQL 176 Query: 269 RRDLSKNI-QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 S+ I + G ++ T + + ++NPP+G+ + Sbjct: 177 EGFRSRQIVRVGDSIQ--AKTDESYDLVIANPPYGRMRPDELAEKIWGKVAYRNHINKYA 234 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 + F ++ GG A+V+ SS F G +R ++ I Sbjct: 235 V---------FAELCLRVVKT----GGLVALVIPSS--FRGGPLY--DRMRSYVASQGQI 277 Query: 388 EAI--VALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 A+ V D+F + ++ + +V+ Sbjct: 278 LALGTVTNREDVFADVAQDVSVLLVRRGAPHLTKQRVKF 316 >gi|126666547|ref|ZP_01737525.1| putative DNA methylase [Marinobacter sp. ELB17] gi|126628935|gb|EAZ99554.1| putative DNA methylase [Marinobacter sp. ELB17] Length = 764 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 100/346 (28%), Gaps = 81/346 (23%) Query: 130 AGLLYKICKNFS------GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 A L + + R + ++Y+ L V + TP V Sbjct: 159 AKRLIDFFQQIDPQTGDIKQDFTDPEWDTRFLGDLYQDL----SESVRKRYALLQTPEFV 214 Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIP 237 L+P F L DPTCG+G FL V + G++ + Sbjct: 215 ESFILDYTLEPAIETFGL---PGLRLIDPTCGSGHFLLTTFERVFERWLKREPGTNTRKL 271 Query: 238 PILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDL------SKNIQQGSTLSK---- 284 HG ++ P AVC +LI +++ + ++ G +L Sbjct: 272 AQRALDVVHGVDINPYAIAVCRFRLLIAAMKAAGSDRVKDAPKFEFHLACGDSLLHGRRH 331 Query: 285 ---------------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + G+R+H + NPP+ +K + + Sbjct: 332 EWEGQGDQQDFLGKHQHVYEVEDEQKLNQILGQRYHVVVGNPPYITVKDKVLNQAYRSKY 391 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANK-LEL-PPNGGGRAAIVLSSSPLFNGRAGSGES 375 ++ G+P F + L G ++ ++S + Sbjct: 392 LTCHRKYSLGVP--------FTERFFDLTLWPVDNQSAGFMGMITTNSFMKR-------- 435 Query: 376 EIRRWLLE----NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 E + L+E + ++ T + N+ ++ Sbjct: 436 EFGKKLIEVYLPRKNLTHVIDTSGAYIPGHGTPTVILFARNQSSKS 481 >gi|94502002|ref|ZP_01308509.1| hypothetical protein RED65_02033 [Oceanobacter sp. RED65] gi|94425878|gb|EAT10879.1| hypothetical protein RED65_02033 [Oceanobacter sp. RED65] Length = 246 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 16/175 (9%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 E + L A LL ++ + + + +Y L S Sbjct: 49 EYLELISKYNKDESLVIASLLGEVI-------IALEGSHSDFLGAVYMEL-----DIGSS 96 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TP DV + + +L +E P + TL +P G G + + + G Sbjct: 97 HIGQFFTPYDVSRMMAKAIYADSFSLLEEKPFL--TLCEPCVGAGSMVIAIADEMLSNGF 154 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + + + +++P + + + + ++ + ++ + Sbjct: 155 NPQNQLWVS--CVDIDPLAARMAFIQLSLLGIPAEVIVGNTLTMKVTEVFRTPMH 207 >gi|300726544|ref|ZP_07059989.1| N-6 DNA Methylase family protein [Prevotella bryantii B14] gi|299776175|gb|EFI72740.1| N-6 DNA Methylase family protein [Prevotella bryantii B14] Length = 360 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 72/283 (25%) Query: 156 SNIYEHL------IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 ++Y +L + +F + A F P + LA+AL+ + + Sbjct: 140 GDLY-YLQVLDIALSKFS--SNHSAGQFTQPVEFAELASALV-----------ESRGKDI 185 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 Y+P G F T + G E +P + + + ++ D Sbjct: 186 YNPFSGLMSFATAMKEYA-------------SFTGVERDPFIADISIFRTHLAGIQ-DKA 231 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK--KWEKDKDAVEKEHKNGELGRFGPG 327 + +++ S +S D +S PP G + + + E Sbjct: 232 SCIPGDVRDWSKISYD--------IIVSTPPIGVPISVKDENRPIRSE------------ 271 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 E N G + S LF+ R EIR L E + + Sbjct: 272 ------------CFCLKNFESLTNDNGVLFTFVVPSVLFDSRRA---REIRHELTEKNYL 316 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 +A+++LP +L + + +L K ++ +++++A++ Sbjct: 317 DAVISLPANLMRPYTSISLVAVLLK-KGRDKNAPIKMLDASEF 358 >gi|269836309|ref|YP_003318537.1| DNA methyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269785572|gb|ACZ37715.1| DNA methyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 1102 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 89/313 (28%), Gaps = 66/313 (21%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 LL + + + + D + YE + + ++ + + TP VV L Sbjct: 286 DLLERTIEAVDPAAIRGKSDTDPWL-YFYEDFLAVYDPKLRDERGVYYTPAQVVKAQVTL 344 Query: 191 LLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADC---------GSHHKIPP 238 + + G T+ DP GTG +L + H + Sbjct: 345 VDELLRTKLNRPLGFADPDVTVLDPATGTGTYLLRVLQHGIERATAIYGPGAAGDIASQM 404 Query: 239 ILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH--- 293 +G EL +AV + I D +I TL H Sbjct: 405 ARNLYGFELLVGPYAVAHLRLAQAIHEFGGREPDDGV-HIYLTDTLESPNEITTLPHSFY 463 Query: 294 ---------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 C+ NPP+ E+++ + G RFG + K + Sbjct: 464 EKPLAEEHRRAREVKRTTPILVCIGNPPY----EREESDSDDGKTGGRWIRFGDQVTKKA 519 Query: 333 ------DGSM----------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 D ++ F K+ +G G + + +SS L Sbjct: 520 PLRSFLDPALKAGKALHVKNLYNLYVYFWRWALWKVFEAQDGPGIVSFITASSYLRGPGF 579 Query: 371 GSGESEIRRWLLE 383 E+RR E Sbjct: 580 VGMREEMRRTFDE 592 >gi|253990769|ref|YP_003042125.1| putative phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639100|emb|CAR67712.1| Probable phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782219|emb|CAQ85383.1| Probable phage integrase [Photorhabdus asymbiotica] Length = 400 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 57/176 (32%), Gaps = 27/176 (15%) Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171 + I + + + E ++ ++ + + + P + ++ L + + Sbjct: 54 RQIIKHY-------KPEDVSRFSQLLEH---VMMGLEFEPHDFLGGVFMQL-----NLGN 98 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + + F TP + + L P TLY+P CG G + A + G Sbjct: 99 KHLKQFFTPWPISLAMAKMQLSDVGQRLTRQP--FFTLYEPACGAGCMVIAAAEVLKMSG 156 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + + +++ ++ + + + + + G L+ + Sbjct: 157 YN--PAQHMWVSCVDIDVVAASMAYIQLSLLGIPGE--------VVIGDALTNERH 202 >gi|400282|sp|P25201|MTA1_ACICA RecName: Full=Modification methylase AccI; Short=M.AccI; AltName: Full=Adenine-specific methyltransferase AccI gi|216197|dbj|BAA01523.1| AccI methylase [Acinetobacter calcoaceticus] Length = 540 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 60/303 (19%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E + F TP + + +L ++T+ +P G G F ++ Sbjct: 24 EHRKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLGVFSRAILSQQK 74 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + + + NI + D Sbjct: 75 EINIKAFEVDETIF-------------------ENAKEYFDDFENVNILLQDYMYND--W 113 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++ + NPP+ K + D + KE + L ++ LFL+ ++L Sbjct: 114 KNKYDGIICNPPYFKFHDYDNKNILKEIETN----LKCKLNGFTNLYTLFLLKSIHQL-- 167 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIATY 406 + GR A ++ S L + ++ +L+++ + I+ + ++F Sbjct: 168 --SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTAS 221 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 + + +N + KVQ N L + +I++ Y + + + Sbjct: 222 IILCAN---DNITDKVQFNNIQSLQDLSK-------------IDEIINKYPNFLETEQTY 265 Query: 467 MLD 469 Sbjct: 266 NFS 268 >gi|293556292|ref|ZP_06674877.1| adenine-specific methyltransferase [Enterococcus faecium E1039] gi|291601551|gb|EFF31818.1| adenine-specific methyltransferase [Enterococcus faecium E1039] Length = 335 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E + + + + P+ + Sbjct: 27 SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 82 QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 136 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 137 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 179 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278 Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435 +LF + IL + + ++ +V L+ L + Sbjct: 279 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 319 >gi|163846419|ref|YP_001634463.1| hypothetical protein Caur_0841 [Chloroflexus aurantiacus J-10-fl] gi|222524188|ref|YP_002568659.1| hypothetical protein Chy400_0909 [Chloroflexus sp. Y-400-fl] gi|163667708|gb|ABY34074.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl] gi|222448067|gb|ACM52333.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 1503 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 41/173 (23%) Query: 151 PDRVMSNIYEHLIRR------------FGSEVS---EGAEDFMTPRDVVHLATALLLDPD 195 + ++YE L+ F + + TP +VH L P Sbjct: 395 DTEELGSVYESLLDYHPLIGKDCETWSFSLSSGSERKTTGSYYTPPQLVHELVESALQPV 454 Query: 196 DALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239 ++ + DP CG+G FL A ++ + + Sbjct: 455 LEARLKAARTTDAKIAALLRLKVLDPACGSGHFLLAAARYLGRELARLRHSESEPSPDAV 514 Query: 240 ---------LVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTL 282 +G + P + + I + + P L I+ G +L Sbjct: 515 RQSVREVIAHCIYGVDKNPLAVELARVALWIESHDVARPLTFLDHRIKCGDSL 567 >gi|322514192|ref|ZP_08067255.1| endonuclease-methyltransferase fusion protein [Actinobacillus ureae ATCC 25976] gi|322119932|gb|EFX91938.1| endonuclease-methyltransferase fusion protein [Actinobacillus ureae ATCC 25976] Length = 1104 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 75/246 (30%), Gaps = 36/246 (14%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 ++REKY NID++ ++ +Y + + + Y+ S Sbjct: 264 DSIREKYG-IVDENIDVKKYLFALQTYYYILIKLLIHSFIKDAVNPQFNIYLLSDIRYVV 322 Query: 113 AIFEDFDFSSTIARLEK------------------AGLLYKICKNFSGIELHPDTVP-DR 153 +FE + + I+ + L +I + + Sbjct: 323 DLFEGKEQNDIISNFFEIHFYEWFTYSEKFDIGIINSTLQEIILKYELASFVLNPESMQD 382 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V+ IY LI + ++ TP V + D + L DP Sbjct: 383 VLQEIYMGLI---PDNLRHLMGEYFTPDWAVEFVLDKIGFTGDID---------KRLCDP 430 Query: 213 TCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 TCG+G FL A+ + + + G ++ P + A ++ L Sbjct: 431 TCGSGAFLLQAIKRIKNNKTVEISDIQKITNNIVGFDINPISAVSAKANYILALLSYSYE 490 Query: 270 RDLSKN 275 + N Sbjct: 491 KIDEIN 496 >gi|319637664|ref|ZP_07992430.1| hypothetical protein HMPREF0604_00053 [Neisseria mucosa C102] gi|317400819|gb|EFV81474.1| hypothetical protein HMPREF0604_00053 [Neisseria mucosa C102] Length = 919 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 57/221 (25%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKES 202 + + ++++ +I T + A L D +FK Sbjct: 280 SEINPDIFGSMFQSVI---NPAQRSRLGQHYTSVPNIMKAIKPLFLDDFQAAFQDIFKRY 336 Query: 203 PGM---------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-------- 239 P ++DP CG+G FL A + Sbjct: 337 PSNEGRLKALYSLSMRLGNIKIFDPACGSGNFLIIAYKELRRLEIEIFKAVKEIDSNAIF 396 Query: 240 ------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGS 280 +G EL+ H + + + + + + + NI+ + Sbjct: 397 SSQIRLDQFYGIELDDFAHEIAMLSLWLAEHQMNLAHENELGNSLPTLPLKSGGNIKAAN 456 Query: 281 TLSKD-------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 +L +D + Y + NPPFG K ++ + Sbjct: 457 SLREDWEAFCPRGKRAEDEVYIVGNPPFGGKQYRNAEQNID 497 >gi|237739043|ref|ZP_04569524.1| type II restriction enzyme [Fusobacterium sp. 2_1_31] gi|229423643|gb|EEO38690.1| type II restriction enzyme [Fusobacterium sp. 2_1_31] Length = 1088 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 40/320 (12%), Positives = 81/320 (25%), Gaps = 96/320 (30%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED- 176 F + L +++ K S + D + + +I+E I + + Sbjct: 318 FKNDDVLNSLNIDDKVFEELKKISDYDFDSDLNVNI-LGHIFEQSISDIEELKKSISGEE 376 Query: 177 -------------FMTPRDVVHLATALLLDPDDALFKESPGMIR---------------- 207 F TP+ + + ++ G Sbjct: 377 FDQKKSKRKKDGIFYTPQYITKYIVENSIKNWLDDKRKELGEDDLPKLNEKDYIFDIAKK 436 Query: 208 -----------------------TLYDPTCGTGGFLTDAMNHVADCGS------------ 232 + DP CG+G FL A + + Sbjct: 437 NYTKNYRKHIEFWQQYREAVRNIKIIDPACGSGAFLITAFEFLLNYNKYLDDKIFDLVGT 496 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKD 285 K G +L E+ + + ++ + + + NI+ G++L D Sbjct: 497 SDLFSDRTKEILQNNIFGVDLNKESVEITKLSLWLKTADKNKTLASLENNIKCGNSLIDD 556 Query: 286 L-----------------FTGKRFHYCLSNPPFGKK------WEKDKDAVEKEHKNGELG 322 F F + NPP+ K+ + + + K Sbjct: 557 PEIAGNLAFNWEKEFPEIFANGGFDIVVGNPPYVKEDIGKNAFNGLHQHLCYQGKMDLWY 616 Query: 323 RFGPGLPKISDGSMLFLMHL 342 FG IS ++ + Sbjct: 617 FFGWLALTISKKEFAYISFI 636 >gi|254884231|ref|ZP_05256941.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837024|gb|EET17333.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 1658 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 76/288 (26%), Gaps = 65/288 (22%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +Y L++ S V F TP ++ + F + + T +P+ G Sbjct: 82 TLYRQLLQSLKSSV---LTAFYTPTFLIQAVAEQI----KDTFTANDLKMGTFLEPSAGI 134 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 GGFL +L + S D I Sbjct: 135 GGFLPVGDMATHRTAFEK-----------------------DLLTGLVLSALHPDTQVFI 171 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + T+ RF SN PFG R G Sbjct: 172 EGFETIDSQETEHNRFDVIASNIPFG------------------DFRVFDNTFSKKGGIY 213 Query: 337 LFLMHLAN-----KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + K N GG A V S G +R +L+ + + Sbjct: 214 AQASKTIHNYFFLKAVEKLNEGGILAFVTSRGIADT----QGNQFVRDYLVHRCNLITAL 269 Query: 392 ALPTDLFFRTN---IATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 LP LF +T+ + + L I KV L + L+ Sbjct: 270 RLPDSLFMQTSGIEVGSDLLIFQKS-----GRKVTLTDREKLFIETTR 312 >gi|237704018|ref|ZP_04534499.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|20068986|gb|AAM09640.1|AF458982_3 m6 adenine DNA methyltransferase [Escherichia coli] gi|226901930|gb|EEH88189.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|281181426|dbj|BAI57756.1| methyltransferase [Escherichia coli SE15] gi|315286889|gb|EFU46306.1| type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family [Escherichia coli MS 110-3] Length = 546 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 73/273 (26%), Gaps = 35/273 (12%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + + T + L LL L + DP G G +T + Sbjct: 25 TKKATGKYYTDPKIALLMIEKLLP----LINSCDKKSYNVADPFSGDGRLITLLIKQ-WM 79 Query: 230 CGSHHKIPPILVPHGQELEPETHAV-CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + E T+A ++ + + + I+ + Sbjct: 80 INGFPDVEWNVYLFDIENTGLTYAKNALSELKLAGANINIT------IKNSDVFYEFKKY 133 Query: 289 GKRFHYCLSNPP-------------FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 F ++NPP F + +E + PK Sbjct: 134 VDYFDCVITNPPWENIKPDSRELDFFEPSMKSMYIDSLREFDDYLSRVLPYSQPKRKFAG 193 Query: 336 MLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 + N G AIV+ +S A +R + I+ I Sbjct: 194 WGTNLSRVGAELSLEICNKNGLVAIVMPASFF----ADEQSYILREKFFNSGRIDCINYY 249 Query: 394 P--TDLFFRTNIATYLWILSNRKTEERRGKVQL 424 P LF ++++ +I K E +QL Sbjct: 250 PAEAKLFGGADVSSCSFIF--NKGESLNDNIQL 280 >gi|134287590|ref|YP_001109756.1| hypothetical protein Bcep1808_7092 [Burkholderia vietnamiensis G4] gi|134132240|gb|ABO59975.1| conserved hypothetical protein [Burkholderia vietnamiensis G4] Length = 333 Score = 51.1 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 20/103 (19%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ Y L ++ A F TP V L + + ++ + +P Sbjct: 114 DVLGETYMML-----DIGNDRAGQFFTPYCVSRLMAGISIGDRCEAIEQE--GFMRMQEP 166 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 CG GG + + + GQ + HA C Sbjct: 167 ACGAGGMVIATADALLSI-------------GQNYQQTMHATC 196 >gi|330814500|ref|YP_004362675.1| hypothetical protein bgla_4p0490 [Burkholderia gladioli BSR3] gi|327374492|gb|AEA65843.1| hypothetical protein bgla_4p0490 [Burkholderia gladioli BSR3] Length = 332 Score = 51.1 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 17/137 (12%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ Y ++ A F TP + L LL+ A + + +P Sbjct: 114 DVLGETYM-----MMGIGNDRAGQFFTPYTISRLMAGLLIGDGSAAIERD--GFMRMQEP 166 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV---PHGQELEPETHAVCVA---GMLIRRL-- 264 CG GG + + + G +++ + + + + M++ Sbjct: 167 ACGAGGMVIATADALLSVGQNYQQTLHATCIDIDARCVHMTYLQLSLMHIPAMIVHGNAL 226 Query: 265 --ESDPRRDLSKNIQQG 279 E +I G Sbjct: 227 TGEIWGIWYTPAHIIGG 243 >gi|260890843|ref|ZP_05902106.1| putative type II restriction enzyme, methylase [Leptotrichia hofstadii F0254] gi|260859396|gb|EEX73896.1| putative type II restriction enzyme, methylase [Leptotrichia hofstadii F0254] Length = 813 Score = 51.1 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 63/421 (14%), Positives = 117/421 (27%), Gaps = 92/421 (21%) Query: 45 ECALEPT--RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 + LE + V E+ + D E + G+ F S + L + Sbjct: 88 DDVLESLFVDNEVFEEMKKISEYDFDSELNENILGHIF-EQSISDIEDLKKELNGEEFDK 146 Query: 103 YIASFSDN---------AKAIFEDFDFSSTIARLEKA---GLLYKICKNFSGIELHPDTV 150 + K I E+ + + K L ++ + IE Sbjct: 147 KKGKRKKDGIFYTPKYITKYIVEN-SIKNWLDDKRKELGEDKLPELTEKDFEIEYTRKKS 205 Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 R YE +R SE + +F T + Sbjct: 206 QKRT----YE---KRIYSENLKKHIEFWT-------------------KYREAVKNIKIV 239 Query: 211 DPTCGTGGFLTDAMNHVADCG------------------SHHKIPPILVPHGQELEPETH 252 DP CG+G FL A ++ + K G +L E+ Sbjct: 240 DPACGSGAFLITAFEYLLNYNNYLNDKIFDLTGTKDLFSDTTKEILQNNIFGVDLNKESV 299 Query: 253 AVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDL-----------------FTGKRFHY 294 + + ++ + + + NI+ G++L D+ F F Sbjct: 300 EITKLSLWLKTADKNKTLATLENNIKCGNSLIDDIEIAGELAFNWEKEFPQVFENGGFDV 359 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 + NPP+ + + + F L+ + + + G Sbjct: 360 VVGNPPYVSTKQIPVNDRNYYWDKYKEILFSEMD--------LYEIFIYKSINELLKNKG 411 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--FFRTNIATYLWILSN 412 + S + +R++LLE I I+ P F N T + IL+ Sbjct: 412 YLGFITRDSYF----TNTSFELLRKYLLEKTKIIEIIDFPYRFYPFKEVNTETAILILNK 467 Query: 413 R 413 + Sbjct: 468 K 468 >gi|163659873|ref|YP_001608496.1| helicase [Bartonella tribocorum CIP 105476] gi|161016942|emb|CAK00501.1| predicted helicase [Bartonella tribocorum CIP 105476] Length = 1597 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 21/230 (9%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + S + I + D ++ ++ Y + + P + ++ +YE Sbjct: 756 NAISQAMEKILTELDKTNIEEESKELQEFYNSVRLRASGITSPLARQNLII-TLYESFFA 814 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223 + + ++ TP +V+ + D F +S G ++ DP GTG F+T Sbjct: 815 KAFKKTTDRLGIVYTPVEVIDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 874 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTL 282 + + H E+ + + + K+I T Sbjct: 875 LQSDLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIEATYHSIMKGEYIPFKHIGLTDTF 934 Query: 283 SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 +L NPP+ + + D + Sbjct: 935 RMLEEKNLLQKLFKENSEYLELQKNLNIEVIFGNPPYSVGQKNENDNAKN 984 >gi|172064554|ref|YP_001812204.1| hypothetical protein BamMC406_6530 [Burkholderia ambifaria MC40-6] gi|171998039|gb|ACB68955.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6] Length = 345 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ Y L + + F TP V L +L D + + G +R + +P Sbjct: 114 DVLGETYMML-----ELGNARSGQFFTPYHVSRLMA-MLTTGDGQPYIQQHGFLR-MREP 166 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 CG GG + +A G H + +++P Sbjct: 167 ACGAGGMVIATGESLAAAG--HNYQQTMHATCVDIDP 201 >gi|210610627|ref|ZP_03288527.1| hypothetical protein CLONEX_00717 [Clostridium nexile DSM 1787] gi|210152349|gb|EEA83355.1| hypothetical protein CLONEX_00717 [Clostridium nexile DSM 1787] Length = 2022 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 64/519 (12%), Positives = 145/519 (27%), Gaps = 79/519 (15%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 + + + + N + + LG + + I + S Sbjct: 933 EIITAVPQKRNQTEEDVAPQQKKSAEQQNNFQITDDALGVGSPKEKFRGNIEAIS----- 987 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RRFGS 168 + + + + +A E+ +L + + G+ D + S Y+ L + Sbjct: 988 LLKKLEAENRLATPEEQEILSRYVG-WGGLSAAFDDRKE-EWSREYQKLKSLLSEGEYRE 1045 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 S F TP V+ +L S G + +P+CG G F+ + Sbjct: 1046 ARSSTLNAFYTPPTVIKAMYQIL-----ENMGLSTG---NVLEPSCGVGNFMGLVPESMQ 1097 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + +G EL+P + + + KN + + + Sbjct: 1098 ----------NIQMYGVELDPISGKIA-------------GQLYQKNRIEVKGFERTEYP 1134 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 F + N PFG D+ S++ + K Sbjct: 1135 ESFFDCVIGNVPFGNYQVSDRKY--------------------DKYSLMIHDYFIVKSLD 1174 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIAT 405 GG A++ SS + ++R E + + LP + F T++ + Sbjct: 1175 LIRPGGVVAVITSSRTM-----DKESEKVRLQFAEKADLLGAIRLPENAFRKNAGTDVVS 1229 Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465 + R + L + + EG K + +L + + E+ ++ Sbjct: 1230 DILFFQK------RDRAVLQKPSWVEVGETEEGYKINSYFVEHPEMVLGDF-AFESNQY- 1281 Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525 ++ + I + L+ + + E D + + + Sbjct: 1282 GRMEVTVKPKKDISLETQLKEVIPFIQGQITVREFDELDLNETEDSILADPSVKNFSFAK 1341 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564 + + + + A T + + Sbjct: 1342 VGGQVYYRENSRMNRMDLPAVTTERVLGMIELRDITKKL 1380 >gi|254522810|ref|ZP_05134865.1| hypothetical protein SSKA14_1941 [Stenotrophomonas sp. SKA14] gi|219720401|gb|EED38926.1| hypothetical protein SSKA14_1941 [Stenotrophomonas sp. SKA14] Length = 1484 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 30/168 (17%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPG------MIRTLYDPTCGTGGF 219 + + TP +V L+P + +PG + + DP CG+G F Sbjct: 465 AGNARKLTGSYYTPDSLVQELIKSALEPVIEQRLAANPGNPTAALLAIRVIDPACGSGHF 524 Query: 220 LTDAMNHV--------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 L A + D + +G + P + + Sbjct: 525 LLAAARRLAEKLAQLRSLEGGQEGAIQPQDYRHALREVVTHCIYGVDRNPMAIELARMAL 584 Query: 260 LIRR-LESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKK 304 + E P L ++Q G L DL ++ + P Sbjct: 585 WLEGYEEGRPLGFLDHHLQVGDALLGLTDLHVLEQGIAKDAFKPLSGD 632 >gi|166367862|ref|YP_001660135.1| DNA modification methyltransferase related protein [Microcystis aeruginosa NIES-843] gi|166090235|dbj|BAG04943.1| DNA modification methyltransferase related protein [Microcystis aeruginosa NIES-843] Length = 904 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 74/248 (29%), Gaps = 51/248 (20%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI------- 206 NI+E +E T D++ + + + +++ + Sbjct: 298 FGNIFE---GTANAEERHTYGMHFTSEADIMKIVRPTISRYWEEKIEQAGTIGELNTLQL 354 Query: 207 ----RTLYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPILVPHGQ 245 + DP CG+G FL A + +G Sbjct: 355 ELQQYKVLDPACGSGNFLYVAYQELKRIEQLLIEKIANRRRSSSDQLQISFVTPKQFYGM 414 Query: 246 ELEPETHAVCVAGMLI----------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ P + ++I S P L NI L D ++ Sbjct: 415 DINPFAVELARVTLMIARKVAIDRFNLTEASLPLDTLDSNIICADALFTDW---QKADAI 471 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPPF + + + ++ N RF + D S+ F + + GR Sbjct: 472 IGNPPF-LGGKHMRLNLSDDYVNKVFARFSE----VKD-SVDFCSYWFRLAHDQLDEKGR 525 Query: 356 AAIVLSSS 363 A +V ++S Sbjct: 526 AGLVGTNS 533 >gi|238918328|ref|YP_002931842.1| hypothetical protein NT01EI_0365 [Edwardsiella ictaluri 93-146] gi|238867896|gb|ACR67607.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 227 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 9/140 (6%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + N++ L + F TP DV + L L A+F E P + TL++P C Sbjct: 87 LGNVFMQL-----ELGDKYRGQFFTPWDVARMMAQLQLGDVKAMFDEKPFI--TLHEPAC 139 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G G + + + G + + +++P + + + + + + Sbjct: 140 GAGCMVLAFADALNQAGYASHLYLWVSAT--DIDPLAAGMAYIQLSLCGVAGEVVIGNAL 197 Query: 275 NIQQGSTLSKDLFTGKRFHY 294 ++ L + Sbjct: 198 CDERRRVLLTPGHYLGSWSL 217 >gi|124267570|ref|YP_001021574.1| hypothetical protein Mpe_A2384 [Methylibium petroleiphilum PM1] gi|124260345|gb|ABM95339.1| hypothetical protein Mpe_A2384 [Methylibium petroleiphilum PM1] Length = 732 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 89/301 (29%), Gaps = 78/301 (25%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS---EVSEGAEDFMTPRD 182 R+E GLL++I + + ++L P + + ++R + + F TP D Sbjct: 142 RVEAEGLLHEIADHKALLDLLPYVLDPHGEGSRMSVMLRPETAPTRARKKADGVFYTPAD 201 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--IL 240 V ++ T++DP CG+G FL + + Sbjct: 202 VAGFMAERIVRSLIDDAVP-----LTVFDPACGSGVFLRAVLTELKRRHPGADAFDLACS 256 Query: 241 VPHGQELEPETHAVCVAGMLI----------RRLESDPRRDLSK-NIQQGSTLSKD---- 285 +G +++P AV A +++ R + + N+ TL D Sbjct: 257 CLYGADIDP--WAVSAAALVVLVDSFESVEARGIAPVAAWHALRLNLVHMDTLRLDPGRA 314 Query: 286 -LFTG-----------------------------------------KRFHYCLSNPPF-G 302 + H + NPP+ Sbjct: 315 VPHDDPERIARLACRAALKAGTLPEVEGEPPPSGPVGFQAVFPEIAEGAHVIIGNPPYAS 374 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 D ++ K + F SD LF+ + +GG A+VL Sbjct: 375 FGEAADFLSLSKRFET-----FQAAPKSTSDMYPLFVEQMTRLTAPDAHGG---AMVLPL 426 Query: 363 S 363 S Sbjct: 427 S 427 >gi|148241073|ref|YP_001220574.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1] gi|146411449|gb|ABQ39902.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1] Length = 1748 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 71/273 (26%), Gaps = 60/273 (21%) Query: 154 VMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + E I + S TP +V + + + + Sbjct: 193 EIGADLEDAIDDAGYASLARCTQYAHFTPEFIVRAIWS--------GLQRLGWRGGRVLE 244 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P GTG F + + G EL+P T + Sbjct: 245 PGIGTGLFPALMPEQLRE---------TSHVTGVELDPVTARIAR------------LLQ 283 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I G ++ F + NPPF + + A Sbjct: 284 PRARIVAGD-FARTELPA-TFDLTVGNPPFSDRTVRSDRAYRSMGLRLHDY--------- 332 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 F+ + LE G AA V SS + A R + ++ + A + Sbjct: 333 ------FIARAIDLLEP----GALAAFVTSSGTMDKADAS-----AREHIAKSADLIAAI 377 Query: 392 ALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 LP F T++ + RK + G Sbjct: 378 RLPEGSFRASAGTDVVVDILFFRKRKVGDAEGD 410 >gi|38234327|ref|NP_940094.1| putative DNA methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38200590|emb|CAE50286.1| Putative DNA methyltransferase [Corynebacterium diphtheriae] Length = 926 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 93/318 (29%), Gaps = 64/318 (20%) Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF-----DF 120 D F K A Y + + + + L + + S ++F Sbjct: 214 AEDAGLFEKDAFYRYLDGLRADQVRVALRDLFEVLNTPVDSRDPYLSEQLKNFPYVNGGL 273 Query: 121 SSTIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 + + ++ + + + + + + + ++E + E T Sbjct: 274 FAKVEQIPNFTDEILDLLVHEVSEKTNWAEISPTIFGGVFESTL---NPETRARGGMHYT 330 Query: 180 PRDVVHLATALLLDP----DDALFKESPGMIR-----------------TLYDPTCGTGG 218 + +H L + + G+ +DP CG+G Sbjct: 331 SPENIHKVIDPLFLDSLKAELDSILNASGITANKRKKQLEAFHTKISELKFFDPACGSGN 390 Query: 219 FLTDAMNHVADCGSHHKIPPI-----------------LVPHGQELEPETHAVCVAGMLI 261 FLT+ H+ + +G E+ +V + I Sbjct: 391 FLTETYIHLRKIENKILSELAGDQTQLGFSNVTLKVSLDQFYGIEINDFAVSVASTALWI 450 Query: 262 RRLESDPRRDL-------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPPF-GKK 304 +L+++ + + +I G+ L D ++ +Y + NPPF G Sbjct: 451 AQLQANIEAESIVTANIESLPLRDAAHIHLGNALRTDWASVLAPEQCNYIIGNPPFLGYS 510 Query: 305 WEKDKDAVEKEHKNGELG 322 D +++ G+ G Sbjct: 511 RLDDAQKEDRKAIFGKNG 528 >gi|257893675|ref|ZP_05673328.1| type I restriction-modification system methylation subunit [Enterococcus faecium 1,231,408] gi|257830054|gb|EEV56661.1| type I restriction-modification system methylation subunit [Enterococcus faecium 1,231,408] Length = 115 Score = 50.7 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 9/92 (9%), Positives = 20/92 (21%), Gaps = 16/92 (17%) Query: 26 FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70 +++ +L + L L E+Y + Sbjct: 1 MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60 Query: 71 SFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE 101 + Y S Y + L + + Sbjct: 61 LIATIVDILGYAISPEYLFNVLADQAKQATFQ 92 >gi|157372289|ref|YP_001480278.1| hypothetical protein Spro_4055 [Serratia proteamaculans 568] gi|157324053|gb|ABV43150.1| conserved hypothetical protein [Serratia proteamaculans 568] Length = 188 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 28/183 (15%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E L + + + + + + L + F TP V + Sbjct: 25 EDVERLAHLLTL---VRIALNAQACDFLGMTFMQL-----ELGDKHRGQFFTPWSVASMM 76 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L + P T+ +P CG GG + A V ++ + ++ Sbjct: 77 AKLQFTGLKQQLQTQP--FVTISEPGCGAGGMMIAAA--VEMQTLGYEPSQHMWVSCVDI 132 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNP 299 + ++ + + + I G+ L+ + +++ + Sbjct: 133 DVVAVSMAYIQLSSLGIPGE--------IVLGNVLANERRLVMYTPMHWLEKWPLRIQQY 184 Query: 300 PFG 302 G Sbjct: 185 HSG 187 >gi|258513312|ref|YP_003189567.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01] gi|256635215|dbj|BAI01188.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01] gi|256638270|dbj|BAI04236.1| DNA methylase [Acetobacter pasteurianus IFO 3283-03] gi|256641324|dbj|BAI07283.1| DNA methylase [Acetobacter pasteurianus IFO 3283-07] gi|256644379|dbj|BAI10331.1| DNA methylase [Acetobacter pasteurianus IFO 3283-22] gi|256647434|dbj|BAI13379.1| DNA methylase [Acetobacter pasteurianus IFO 3283-26] gi|256650487|dbj|BAI16425.1| DNA methylase [Acetobacter pasteurianus IFO 3283-32] gi|256653478|dbj|BAI19409.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656531|dbj|BAI22455.1| DNA methylase [Acetobacter pasteurianus IFO 3283-12] Length = 902 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 44/202 (21%) Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGM---------- 205 +I+ +I+ E GA T + L E G Sbjct: 281 DIFGSMIQAVADEGERGALGMHYTSVPNIRKVLNPLFLDGLREELEKAGQNTQKLHALKE 340 Query: 206 ---IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPE 250 ++DP CG+G FL A + D S + +G E+ Sbjct: 341 RLSGIRVFDPACGSGNFLVIAYKDMRDIQSEIDDRLKIERAERKSVIPLANFYGIEIRDF 400 Query: 251 THAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF---TGKRFH- 293 + +LI +SD K +I G+ L +D F ++ Sbjct: 401 AVEIARLSLLIAEFQSDEIHIDQKQARLNVLPLKDTGHIICGNALERDWFDVCAPQKSSE 460 Query: 294 -YCLSNPPFGKKWEKDKDAVEK 314 Y NPP+ + + Sbjct: 461 IYICGNPPYKGSQWQSAEQKAD 482 >gi|300772424|ref|ZP_07082294.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300760727|gb|EFK57553.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 1810 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 81/301 (26%), Gaps = 61/301 (20%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L I ++ L++ + + F TP Sbjct: 49 VLNPIANEIDINHWRKTEHDLFPITLELHKLLKEKSEDDKQYRRYVDSMKSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V+ + L + D + K +P+ G G F+ + Sbjct: 109 PQVIDAISETLRESDVNIQK--------FLEPSAGIGSFIQSFSE---------NQQTKV 151 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 + ++ L+ + NI+ + SN P Sbjct: 152 TAYEKD-------------LLTG-KILKHLYPESNIRVSGYEEIPEKEQNSYDVVASNIP 197 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 FG D + P + + K GG + Sbjct: 198 FGDTSVFDLTFSRSKD------------PAKIQAARSIHNYFFLKGNDMLREGGLQVFIT 245 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417 S L + IRR L++++ + ++V LP +LF T + + L IL ++ Sbjct: 246 SQGILNSPNNEP----IRRALMKSNHLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKQ 301 Query: 418 R 418 Sbjct: 302 P 302 >gi|227537745|ref|ZP_03967794.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300] gi|227242359|gb|EEI92374.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300] Length = 1810 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 81/301 (26%), Gaps = 61/301 (20%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L I ++ L++ + + F TP Sbjct: 49 VLNPIANEIDINHWRKTEHDLFPITLELHKLLKEKSEDDKQYRRYVDSMKSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 V+ + L + D + K +P+ G G F+ + Sbjct: 109 PQVIDAISETLRESDVNIQK--------FLEPSAGIGSFIQSFSE---------NQQTKV 151 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 + ++ L+ + NI+ + SN P Sbjct: 152 TAYEKD-------------LLTG-KILKHLYPESNIRVSGFEEIPEKEQNSYDVVASNIP 197 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 FG D + P + + K GG + Sbjct: 198 FGDTSVFDLTFSRSKD------------PAKIQAARSIHNYFFLKGNDMLREGGLQVFIT 245 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417 S L + IRR L++++ + ++V LP +LF T + + L IL ++ Sbjct: 246 SQGILNSPNNEP----IRRALMKSNHLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKQ 301 Query: 418 R 418 Sbjct: 302 P 302 >gi|24213603|ref|NP_711084.1| methylase [Leptospira interrogans serovar Lai str. 56601] gi|45658571|ref|YP_002657.1| site-specific modification DNA-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194397|gb|AAN48102.1| methylase [Leptospira interrogans serovar Lai str. 56601] gi|45601815|gb|AAS71294.1| site-specific modification DNA-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 543 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 92/252 (36%), Gaps = 31/252 (12%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 ++ F TP V H +L S G+ R + DP G G F +N + D Sbjct: 9 NKFLGQFFTPERVAHFLVDWVLG--AERITSSEGLKR-ILDPAIGNGVFFESVLNRLPDL 65 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + G +L+ E + A + R +S ++ + Sbjct: 66 NAEW--------VGFDLDIECLSSSRAVLENRISDSSILSFYDRDFLL-------QEENQ 110 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 +F L NPP+ + + KE G+ LP ++ + FL+ N + + Sbjct: 111 KFDVILCNPPYR---KINDKNYSKELIQQFEGKSDRKLPGTANLYVFFLLKCLNLIHV-- 165 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIATYLW 408 GGRAA ++ +G +S L E+ L+ ++ LF ++ + Sbjct: 166 --GGRAAFLVPQDFFNSGYGVFIKSV----LQESGLLHSLFLFSPQDILFDEAITSSCIL 219 Query: 409 ILSNRKTEERRG 420 + N + E++ G Sbjct: 220 LFENSEREKKSG 231 >gi|225075297|ref|ZP_03718496.1| hypothetical protein NEIFLAOT_00300 [Neisseria flavescens NRL30031/H210] gi|224953472|gb|EEG34681.1| hypothetical protein NEIFLAOT_00300 [Neisseria flavescens NRL30031/H210] Length = 960 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 42/346 (12%), Positives = 84/346 (24%), Gaps = 83/346 (23%) Query: 24 GDFKHTDFGKVILPFTLLRRLEC--ALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYS 79 G ++ + I L + + E L + Sbjct: 183 GIYEEHELRLFITRLLFLFFADDSAVFQRNYLFQDFLESCKEADTLGDKLNQLFE----- 237 Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK- 138 F NT + + + Y+ K FDF++ R + Sbjct: 238 FLNTP--DQKRSKTQSEKFKGFEYVNG--GLFKERLRTFDFTAKQHR--------ALIDC 285 Query: 139 -NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-- 195 NF + P+ + +++ ++ ++ A T + L + Sbjct: 286 GNFDWRNISPE-----IFGTLFQSVMD---AQERREAGAHYTEAANIDKVINGLFLENLR 337 Query: 196 -----DALFKESPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--- 237 K DP CG G FL A + + Sbjct: 338 AEFEAVKALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALK 397 Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------- 270 + HG E++ + M ++ + + R Sbjct: 398 DKAGGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTL 457 Query: 271 --DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + + I ++L + Y NPPF + K+ Sbjct: 458 PLEDAAEIIHANSLRTPW---QAADYIFGNPPFIGSTYQTKEQKND 500 >gi|329849646|ref|ZP_08264492.1| endonuclease and methylase LlaGI [Asticcacaulis biprosthecum C19] gi|328841557|gb|EGF91127.1| endonuclease and methylase LlaGI [Asticcacaulis biprosthecum C19] Length = 1015 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 84/317 (26%), Gaps = 45/317 (14%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGT 216 +YE+ + + + ++ TP ++V K + DP GT Sbjct: 286 VYENFYKVYNPKAADRLGVVYTPNEIVRFMIEGTDWLTKKHFDKHLIDRDVQILDPATGT 345 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G F+ + + H H E+ + V + + ++ Sbjct: 346 GTFICELIEHFRGQPEKLAHKYKEELHANEVAILPYYVANLNIEATYAAISGQFSEFPSL 405 Query: 277 QQGSTLSK------------DLFTG--------------KRFHYCLSNPPFGKKWEKDKD 310 TL DLF + + NPP+ + + D Sbjct: 406 CFVDTLDNVAGLGIYSGFQHDLFGAIADENVARIKRQNQRSISVIIGNPPYNANQQNEND 465 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSSSPLF 366 + R + S L + + N G ++ + S + Sbjct: 466 NNKNRTYARIDERIKETYIRQSTAQKTKLYDMYARFFRWASDRLNRDGVLCMITNRSFID 525 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT----------NIATYLWILSNRKTE 416 + R+ + E +V L D+ I T + I K Sbjct: 526 SRTFDG----FRKVVAEEFNEIYVVDLGGDVRANPKLSGTKHNVFGIQTGVAISFFVKRH 581 Query: 417 ERRGKVQLINATDLWTS 433 +++G + + Sbjct: 582 KQKGYKIFYARRPEFDT 598 >gi|296450810|ref|ZP_06892561.1| N-6 DNA methylase superfamily protein [Clostridium difficile NAP08] gi|296260371|gb|EFH07215.1| N-6 DNA methylase superfamily protein [Clostridium difficile NAP08] Length = 2006 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 91/323 (28%), Gaps = 70/323 (21%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH- 161 F N AI + + + A E+ +L G PD + S E+ Sbjct: 961 EKFRANVMAIRVLKKCESENRYASPEEQEILSNYV----GWGGLPDAFDESKASWSEEYQ 1016 Query: 162 ----LIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 L+ + + + T ++ L + + +P+ G Sbjct: 1017 ELKDLLTKEEYAAARESTLNAHYTQPVIIESMYQL--------LQNLGFEKGNILEPSMG 1068 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 G F + + +G EL+ + + + Sbjct: 1069 VGNFFGMLPDKLQQ----------SRLYGVELDSISGRIAKL----------LYPNADIQ 1108 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I+ K + F + N PFG D+ + + Sbjct: 1109 IKG---FEKTDYPNDFFDVAIGNVPFGSYKVNDRQYDKYHFMVHDY-------------- 1151 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 FL ++L GG AA++ + + E+R++L E + + LP Sbjct: 1152 --FLAKTIDQLRP----GGVAALITTKGTM-----DKASPEVRKYLAERAELLGAIRLPN 1200 Query: 396 DLF-FRTNIATYLWILSNRKTEE 417 + F IL +K E Sbjct: 1201 NAFKANAGTEVSADILFFQKRES 1223 >gi|315222591|ref|ZP_07864480.1| type I restriction modification DNA specificity domain protein [Streptococcus anginosus F0211] gi|315188277|gb|EFU22003.1| type I restriction modification DNA specificity domain protein [Streptococcus anginosus F0211] Length = 537 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 29/201 (14%) Query: 249 PETHAVCVAG-MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 + + L + +I+Q + + + FT ++F LS P FG + + Sbjct: 146 DSHFTLTTMDAFYYKVLNEMFDDNDMVDIKQIN-IYQYEFTSEKFDLILSVPVFGVRDKA 204 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D+ + + M+ +LA L+ G +IVL + F Sbjct: 205 DESSEFICRE----------------YDMIAAENLALHLKSE----GILSIVLPAKITFA 244 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 G E+R +L ++ I LP+ +F T + T+L I++ + +V + Sbjct: 245 GGTV---KELREFLQSMYCLKEISDLPSGIFDNTGVKTFLLIITTGR----TDEVTIKRF 297 Query: 428 TDLWTSIRNEGKKRRIINDDQ 448 + R G K+ ++ DD Sbjct: 298 VFEDENARKTGNKKLVVQDDT 318 >gi|294783280|ref|ZP_06748604.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294480158|gb|EFG27935.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 246 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 29/205 (14%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 E + + +K + E F FY S + + +G+ + ++ + + Sbjct: 20 EASVDNIVKKIQSLVHKQNYDEIFFDWVRCMFYTYSN-TCNKIGAEDREEKYKNIVKKYG 78 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 IF D + + + F + Y I Sbjct: 79 KGIIDIFIDCNVD--------------LIQLFEKNI------------DDYLGKIHHKLE 112 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 ++ F TP + L + G + D CG+G + + + Sbjct: 113 VHNKMKGQFFTPFHLSKLLAYTRFEELKKELDS--GKSIKITDSACGSGCLILGMLAVLK 170 Query: 229 DCGSHHKIPPILVPHGQELEPETHA 253 + G +++ + + A Sbjct: 171 EKGVNYQNKIFISCSDLDENAIQMA 195 >gi|38261096|ref|NP_940747.1| GcrY [Arcanobacterium pyogenes] gi|37993851|gb|AAR07009.1| GcrY [Arcanobacterium pyogenes] Length = 910 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 74/282 (26%), Gaps = 71/282 (25%) Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--- 195 + + + V ++++ + + E G + T + + L + Sbjct: 314 LLNACDFDWSKIDVSVFGSLFQLVKSK---EARRGDGEHYTSKTNILKTIGPLFLDELRA 370 Query: 196 -DALFKESPG-------------MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 +P DP CG G FL A + + Sbjct: 371 QADKLVSNPATPVRKLEEFRDSLAAHIFCDPACGAGNFLLTAYKELRRIETDLIVAIRQR 430 Query: 234 ------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------- 273 + I +G EL + M + +++ + Sbjct: 431 RGETGMSLNIEWEQKLSIGQFYGFELNWWPAKIAETAMFLVDHQANKELANAVGRPPQRL 490 Query: 274 -----KNIQQGSTLSKDLFTGKRF----HYCLSNPPFG---KKWEKDKDAVEKEHKNGEL 321 +I G+ L+ D + NPPF + ++ + ++ + + Sbjct: 491 PITITAHIVHGNALALDWTEALPKAVGETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKNI 550 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 R L+L GR A V ++S Sbjct: 551 SRLDYVT-----------CWHIKSLDLFSTRNGRFAFVTTNS 581 >gi|225032082|gb|ACN79574.1| NmeAIII [synthetic construct] Length = 937 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 85/346 (24%), Gaps = 83/346 (23%) Query: 24 GDFKHTDFGKVILPFTLLRRLECALEPTR----SAVREKYLAFGGSNIDLESFVKVAGYS 79 G ++ + I L + + R E L + Sbjct: 183 GIYEEHELRLFITRLLFLFFADDSAVFRRNYLFQDFLENCKEADTLGDKLNQLFE----- 237 Query: 80 FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK- 138 F NT + + + Y+ K FDF++ R + Sbjct: 238 FLNTP--DQKRSKTQSEKFKGFEYVNG--GLFKERLRTFDFTAKQHR--------ALIDC 285 Query: 139 -NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-- 195 NF + P+ + +++ ++ ++ A T + L + Sbjct: 286 GNFDWRNISPE-----IFGTLFQSVMD---AQERREAGAHYTEAANIDKVINGLFLENLR 337 Query: 196 -----DALFKESPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--- 237 K DP CG G FL A + + Sbjct: 338 AEFEAVKALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALK 397 Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------- 270 + HG E++ + M ++ + + R Sbjct: 398 DKADGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTL 457 Query: 271 --DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + + I ++L + Y NPPF + K+ Sbjct: 458 PLEDAAEIIHANSLRTPW---QAADYIFGNPPFIGSTYQTKEQKND 500 >gi|327403687|ref|YP_004344525.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] gi|327319195|gb|AEA43687.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823] Length = 866 Score = 50.7 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 45/354 (12%), Positives = 105/354 (29%), Gaps = 58/354 (16%) Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE---THAVCVAGMLIRRLESDPR 269 GG + + + L L + A+ A I + + Sbjct: 192 CSIIGGLDIYSEKLILRTNQNMLNNYKLNIFENNLNAAYLHSFAMQWANDDIVKQNNLLL 251 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 + + + + D + PP+G + + + Sbjct: 252 EAATGSFE---SFKDDNQPTRAVGIFT--PPWGVFNKDSEWSS----------------- 289 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 + +F+M+ E +A +++ ++G R++L E + I++ Sbjct: 290 -----NFVFIMNELEGREKILLN--KAVLIVPEGANYSGGKD---LNARKYLTERNYIDS 339 Query: 390 IVALPTDLFFRTNIA---TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 +V LP F IA + + K E +V + + + N ++ Sbjct: 340 VVTLP---FSSPGIAIKSISIIVFDFNKKSE---EVLFAD----FNQMENFDIEQNW--- 386 Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 QI+ + ++N + S+ ++Y+ Y P R F L + Sbjct: 387 ---NQIVTVINDKQNLHQVSKKVNYQELQYSEYSWA-PTRYIFDAQSLPLKENHEAVLLD 442 Query: 506 KLSPLHQSFWLDILKPMMQ--QIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557 L + + K + + +I ++ + L + A + Sbjct: 443 SLLLQIKKGFNIDRKKLYEGGEIKYLKTSDLSQNDIYLQLNENILGIDADEFEK 496 >gi|331089477|ref|ZP_08338376.1| hypothetical protein HMPREF1025_01959 [Lachnospiraceae bacterium 3_1_46FAA] gi|330404845|gb|EGG84383.1| hypothetical protein HMPREF1025_01959 [Lachnospiraceae bacterium 3_1_46FAA] Length = 286 Score = 50.7 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 21/170 (12%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + + +I+ L + + F TP V L + +D Sbjct: 131 EENPEQDFLGSIFMEL-----NLGDKSNSQFFTPYHVCELMAKV--TEEDVAAVVKEKGY 183 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRL 264 T+ D CG G L A+N + Q+++ +C + + + Sbjct: 184 ITINDSCCGAGATLIAAINEARKQLEKVNLNFQNHVLVVAQDIDEIVALMCYIQLSLLGV 243 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + I+ G ++ + T N F + D + + Sbjct: 244 --------AAYIKVGDVFTQPMSTDDNGE----NYWFTMMYFSDVWTMRR 281 >gi|188527483|ref|YP_001910170.1| hypothetical protein HPSH_03515 [Helicobacter pylori Shi470] gi|188143723|gb|ACD48140.1| hypothetical protein HPSH_03515 [Helicobacter pylori Shi470] Length = 1409 Score = 50.7 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 88/307 (28%), Gaps = 35/307 (11%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ I+ D L+ LY+ K + ++ Sbjct: 604 GDNIKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMRAKSQKSQQELIK 659 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 660 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRAADGILKKHFNTDFNDKNITIFDPFTG 719 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ ++ + S K + ++ + + + + D Sbjct: 720 TGSFIARLLSKENELISDEALKEKFLNHLFAFDIVLLAYYIALINITQAAQSRDSSLKNF 779 Query: 274 KNIQQGSTL-----SKDL-----FTGKR-------------FHYCLSNPPF--GKKWEKD 308 KNI +L D F + + NPP+ G K + D Sbjct: 780 KNIALTDSLDIYEEKNDKGVLPIFEDLKENKEIKSTIEKQNIRVIIGNPPYSAGTKSQND 839 Query: 309 KDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + K + G ++ + + L+ G V++ S + Sbjct: 840 NNQNLSHPKLEKRVYEKYGKNSTAQVGNTTRDTLIQSIYMASELLKDRGVLGFVVNGSFI 899 Query: 366 FNGRAGS 372 + A Sbjct: 900 DSKSADG 906 >gi|41584550|gb|AAS09913.1| BsmBI M1-M2 methyltransferase fusion protein [Geobacillus stearothermophilus] Length = 1068 Score = 50.7 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 87/271 (32%), Gaps = 62/271 (22%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 S+ F TP + L K+ P ++++ DP CG G L A+ + Sbjct: 119 ASKAYGYFFTPISLGTRMVKL-------ALKDKPKNLKSIVDPACGIGSLLALALIY--- 168 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----TLSKD 285 + G EL+ T + L+ R+ D I + L+ + Sbjct: 169 -NPEIEN-----VVGIELDSFTANISHK--LLVRISKDLGITPKIKIINQNFLDYVLNYE 220 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE--------------------LGR-- 323 ++F + NPP+G+ KE K+G R Sbjct: 221 EEHKEKFDLLIMNPPYGRVRFLKNSLTNKETKSGLTEGISELEKKLREETILNAADLRKK 280 Query: 324 -----FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 G G P+ S +FL ++ G AI + G E +R Sbjct: 281 FASVGLGKGTPEYSK---VFLAI---STKIVKQNGYVIAITP---SSWLGDESGRE--LR 329 Query: 379 RWLLENDLIEAI--VALPTDLFFRTNIATYL 407 ++L+EN I I LF N T + Sbjct: 330 KYLVENHGISCIWNFKESAKLFSGVNQPTTV 360 >gi|308063540|gb|ADO05427.1| hypothetical protein HPSAT_03445 [Helicobacter pylori Sat464] Length = 1604 Score = 50.7 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 84/307 (27%), Gaps = 35/307 (11%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ I+ D L+ LY+ K + ++ Sbjct: 803 GDNIKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMRAKSQKSQQELIK 858 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 859 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTG 918 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ ++ + S K + + ++ + + + + D Sbjct: 919 TGSFIARLLSKENELISDEALKEKFLNHLYAFDIVLLAYYIALINITQAAQSRDGSLKNF 978 Query: 274 KNIQQGSTL-----SKDL-----FTGKR-------------FHYCLSNPPFGKKWEKDKD 310 KNI +L D F + + NPP+ + D Sbjct: 979 KNIVLTDSLDIYEEKNDKGVLPIFEDLKENKEIKSTIEKQNIRVIIGNPPYSAGAKSQND 1038 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSM-----LFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + R K S + L+ G V++ S + Sbjct: 1039 NNQNLSHPKLEKRVTEKYGKNSTAQVENTTRDTLIQSIYMASELLKDRGVLGFVVNGSFI 1098 Query: 366 FNGRAGS 372 + A Sbjct: 1099 DSKSADG 1105 >gi|262195378|ref|YP_003266587.1| restriction endonuclease [Haliangium ochraceum DSM 14365] gi|262078725|gb|ACY14694.1| restriction endonuclease [Haliangium ochraceum DSM 14365] Length = 629 Score = 50.7 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 74/255 (29%), Gaps = 44/255 (17%) Query: 175 EDFMTPRDVVHLATALLL---DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 F TP +V A L L + DP G G FL A + Sbjct: 76 GAFFTPLPLVDFVVAQTLGARLARGELRWRGDIPALRVLDPCAGDGRFLRRAHAALLAWT 135 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN------IQQGSTL--S 283 Q P+ A+ A +L +E DP I L S Sbjct: 136 RR-----------QGRAPDPDALARACLL--GVERDPGFAALARRLSGAEIHCWEALGES 182 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM----LFL 339 D F G F + NPP+ + + GR+ S G FL Sbjct: 183 PDSFAG-SFDLVVGNPPYMRSI--HLADSDPALWQALAGRYAA----TSHGEWDLYAAFL 235 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLF 398 H L GG+ +V+ S L A +R L E + AIV +F Sbjct: 236 EHSLRWLAP----GGQVGLVVPSRWLTAAFARP----LRALLGEGRAVRAIVDFGAQQIF 287 Query: 399 FRTNIATYLWILSNR 413 + LS Sbjct: 288 RGATTYASVAFLSRE 302 >gi|295100255|emb|CBK97800.1| Type I restriction-modification system methyltransferase subunit [Faecalibacterium prausnitzii L2-6] Length = 297 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 I + ++Y ++ A F TP DV + DP Sbjct: 85 IMGMEQNPDQDFLGSLYM-----MCELGNDHAGQFFTPYDVCRCMAEITFDPK---LHPD 136 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 ++ DP CG G L +N Sbjct: 137 MEGFISVSDPACGAGATLLAFLNVCKRRN 165 >gi|257880287|ref|ZP_05659940.1| adenine-specific methyltransferase [Enterococcus faecium 1,230,933] gi|257882141|ref|ZP_05661794.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,502] gi|257885332|ref|ZP_05664985.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,501] gi|257890944|ref|ZP_05670597.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,410] gi|257894200|ref|ZP_05673853.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,408] gi|257814515|gb|EEV43273.1| adenine-specific methyltransferase [Enterococcus faecium 1,230,933] gi|257817799|gb|EEV45127.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,502] gi|257821188|gb|EEV48318.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,501] gi|257827304|gb|EEV53930.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,410] gi|257830579|gb|EEV57186.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,408] Length = 339 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E + + + + P+ + Sbjct: 31 SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 85 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 86 QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 140 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 141 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 183 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 184 --FHQDGLQELLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 230 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 231 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 282 Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435 +LF + IL + + ++ +V L+ L + Sbjct: 283 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 323 >gi|256760965|ref|ZP_05501545.1| endonuclease and methylase LlaGI [Enterococcus faecalis T3] gi|256682216|gb|EEU21911.1| endonuclease and methylase LlaGI [Enterococcus faecalis T3] Length = 1576 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 93/311 (29%), Gaps = 43/311 (13%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 +N E+ F+ LE LY+ K + + ++ +Y+ Sbjct: 798 ENIVKELENAGFAKEQENLEP---LYESVKMRAEGIERAEDKQKIII-TLYDKFFSTAFK 853 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHV 227 +E TP +VV + D +A K + DP GTG F+ ++++ Sbjct: 854 STTERLGIVFTPIEVVDFIVKSVDDVLNAHLGKTLSSENVHIMDPFTGTGTFIVRTLSYL 913 Query: 228 ADC--GSHHKIPPILVPHGQELEPE-----THAVCVAGM---LIRRLESDPRRDLSKNIQ 277 + K ++ + QEL ++ + + D + I Sbjct: 914 KEQLISGKIKKEDVIRKYSQELHANEIVLLSYYIAAINIESTFDEITGKDLGYTPFEGIV 973 Query: 278 QGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEH-- 316 T D + F + NPP+ + E + D + Sbjct: 974 LTDTFESTEVPDTLDDEYFGSNDERLKRQQEVPITAIIGNPPYSARQESENDDNKNISYT 1033 Query: 317 KNGELGRFGPG-LPKISDGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 E R + + + L+ L G A + +SS + + Sbjct: 1034 NLDEQIREDYAQYTNVRNKNTLYDSLFRAFKWSTNRLKDKGVIAYITNSSFIDSQTTSG- 1092 Query: 374 ESEIRRWLLEN 384 IR+ L E Sbjct: 1093 ---IRKDLFEQ 1100 >gi|218263970|ref|ZP_03477901.1| hypothetical protein PRABACTJOHN_03591 [Parabacteroides johnsonii DSM 18315] gi|218222381|gb|EEC95031.1| hypothetical protein PRABACTJOHN_03591 [Parabacteroides johnsonii DSM 18315] Length = 1661 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 66/450 (14%), Positives = 129/450 (28%), Gaps = 62/450 (13%) Query: 40 LLRRLECALEP--TRSAVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + R+ ++ + A E +++ + + + + L + Sbjct: 757 FIERISKLIQSGVHKKAFNEYLKGLQRDLNPSVDAAQAIEMLAQHIITRPVFDALFADYQ 816 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC-KNFSGIELHPDTVPDRVM 155 N + ++ + ++ F LEK Y+ N GI+ ++ Sbjct: 817 FVN-NNAVSRSMQRMIDLLQEQAFEKDTEVLEK---FYQSVRTNVGGIDNLEGKQT--II 870 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTC 214 N+YE + E TP + V + D A F S + DP Sbjct: 871 KNLYEKFFKGAFPLTVEKLGIVYTPVECVDFIIRSVDDILKAEFNTSLTEQNVHILDPFV 930 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDL 272 GTG F+T + + + H E+ + + + + + Sbjct: 931 GTGTFITRLLQSGLIRPEDMERKYLNEIHCNEIVLLAYYIADVNIESVFHDITRRKTYLP 990 Query: 273 SKNIQQGST--LSKDLFTG------------------KRFHYCLSNPPFGKKWEKDKDAV 312 I T L++ + NPP+ + D Sbjct: 991 YSGICLTDTFQLAEKKHNELFTEFFQDNSKRVKKQMATHVRVIVGNPPYSIGQKSANDNA 1050 Query: 313 EKEHKNGELGRFGPGLPKISDGSML------FLMHL-ANKLELPPNGGGRAAIVLSSS-- 363 + R K S ++L ++ L PN GG A + +S Sbjct: 1051 QNLSYPALERRIEDTYVKKSSAALLKGVYDSYIKAFRWASDRLNPNEGGIIAFITNSGWL 1110 Query: 364 --PLFNGRAGSGESEI------------RRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408 P+ G + E E R EN E ++F T +A + Sbjct: 1111 DKPMGEGFRRTIEQEFSKIYVFDLRGAVRAKTKENARKEG-----ENVFNIMTGVAITIL 1165 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEG 438 + + +E + ++ N D T + Sbjct: 1166 VKNPAHQKEDKCEILYRNIGDYLTREQKLK 1195 >gi|327184437|gb|AEA32882.1| putative type II restriction endonuclease [Lactobacillus amylovorus GRL 1118] Length = 948 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 86/317 (27%), Gaps = 65/317 (20%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L I N + + + ++E + + T + +H Sbjct: 303 EKLKDIILNKASRGFDWSDISPTIFGAVFESTL---NPDTRREGGMHYTSIENIHKVIDP 359 Query: 191 LL-------------------DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230 L D A+ + T +DP CG+G FLT+ + Sbjct: 360 LFLDDLKAKLEKIKQYKNQKTIHDKAVAFQEELANLTFFDPACGSGNFLTETFLSLRRLE 419 Query: 231 ------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 I G E+ +V + I + Sbjct: 420 NEAIRLELGGESVLDVGQAKDWIKVSIQQFSGIEINDFAVSVAKTALWIAEDQMMKETQD 479 Query: 273 --------------SKNIQQGSTLSKDLF---TGKRFHYCLSNPPF-GKKWEKDKDAVEK 314 I +G+ L D HY + NPPF G K+ K Sbjct: 480 LLYAPDWDFLPLKTYTRIHEGNALEMDWNKVIPNYACHYIIGNPPFSGLSALPAKNKKLK 539 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + + ++ R LPK + K G A +S++ + G Sbjct: 540 KQQTEDMNRVFKDLPKHGKLDY--VTAWYEKAADMMQGTNIKASFVSTNSITQGEQV--- 594 Query: 375 SEIRRWLLENDLIEAIV 391 + + L+E+ + I+ Sbjct: 595 GILWKHLIEDKNL-TII 610 >gi|304310355|ref|YP_003809953.1| hypothetical protein HDN1F_07090 [gamma proteobacterium HdN1] gi|301796088|emb|CBL44292.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 1305 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 48/178 (26%) Query: 154 VMSNIYEHLI----------RRF-----------GSEVSEGAEDFMTPRDVVHLATALLL 192 + ++YE L+ R+F + + + TP +V L Sbjct: 428 ELGSVYESLLELVPEIDLPARKFGFVGLTSEGSTAGNARKLSGSYYTPDSLVQELIKSAL 487 Query: 193 DP-DDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADC----------GSHHK 235 DP + P + + DP CG+G FL A +A+ Sbjct: 488 DPVIEQRLAAQPESPVEALLAIRVIDPACGSGHFLLAAARRLAEKLAQLRAASSENGEQS 547 Query: 236 IPPILV---------PHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLS 283 G + P + + + E P L ++Q G L Sbjct: 548 EQDFRHALREVIATCIFGVDRNPMAVELARTALWLEGFEEGRPLGFLDHHLQVGDALL 605 >gi|78776330|ref|YP_392645.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] gi|78496870|gb|ABB43410.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251] Length = 533 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 60/302 (19%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 S+ + F TP + +L + +L + ++T+ +P G G + + Sbjct: 22 SSKHRKQFAQFFTPFSIANLMSKWILGNQN---------LKTVLEPAFGLG-IFSRVLLS 71 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + + + NI + D Sbjct: 72 CKEDIEIKGFEVDKIIFQKAKQ------------------YFSETKNCNIILQDYMYND- 112 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 ++ + NPP+ K + D + KE + + + LFL+ ++L Sbjct: 113 -WKNKYDGIICNPPYFKFHDYDNKNILKEIETNLKCKLNGFT----NLYTLFLLKSIHQL 167 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIA 404 + GR A V+ S L + ++ +L+++ + ++ + +LF Sbjct: 168 ----SVNGRCAYVIPSEFLNSDYG----KLVKTYLIKSKTLRHVIVINFEENLFDDALTT 219 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + SN + KVQ N L + +I+ Y + + Sbjct: 220 ASIIFCSN---DNLTEKVQFTNIKSLEDLSK-------------IEEIISKYPNFSKTEQ 263 Query: 465 SR 466 + Sbjct: 264 TY 265 >gi|194336503|ref|YP_002018297.1| putative type II DNA modification enzyme [Pelodictyon phaeoclathratiforme BU-1] gi|194308980|gb|ACF43680.1| putative type II DNA modification enzyme [Pelodictyon phaeoclathratiforme BU-1] Length = 1355 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 38/167 (22%) Query: 154 VMSNIYEHLI----------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 ++YE L+ R + + T +V LDP Sbjct: 418 EFGSVYESLLELHPFTDLLPTPLFDFRHAAGNERKTTGSYYTHAALVESLLQSALDPHID 477 Query: 198 LFKESPGMIRTL-----YDPTCGTGGFLTDAMNHVAD----------------CGSHHKI 236 ++S +++ DP CG+G FL A +A + Sbjct: 478 EAEKSTTPEKSILALKVCDPACGSGHFLIAAAQRIARRLARLRAGDEEPSPELLHHTLRE 537 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282 G ++ P +C G+ + +E P L +I+ G++L Sbjct: 538 VIGHCIFGVDINPMAAELCRVGLWLEAMEPGKPLSFLEHHIRVGNSL 584 >gi|296876458|ref|ZP_06900509.1| methylase [Streptococcus parasanguinis ATCC 15912] gi|296432451|gb|EFH18247.1| methylase [Streptococcus parasanguinis ATCC 15912] Length = 807 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 59/248 (23%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L ++ + + + ++E + E T + +H Sbjct: 285 DELRELILEHASSSFDWSEISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDP 341 Query: 191 LLD-------------------PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 L A +S +DP CG+G FLT+ + Sbjct: 342 LFLNELKEELNEIRQFKQPKTVEQKAKQFQSKLASLLFFDPACGSGNFLTETYISLRRLE 401 Query: 232 SHHKIP-----------------PILVPHGQELEPETHAVCVAGMLI------------- 261 + + +G E+ +V + I Sbjct: 402 NEAIKLYMGDAVALDLGQDLVKVKLKQFYGIEINDFAVSVAKTALWIAESQMLEETKDIV 461 Query: 262 -RRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPF--GKKWEKDKDAVEKE 315 ++ P + NI QG+ L D + Y + NPPF + ++ K Sbjct: 462 FANIDFLPLK-SYTNIVQGNALRVDWETVAPKDKLSYIIGNPPFLGHRNVSVEQKDDMKR 520 Query: 316 HKNGELGR 323 N + GR Sbjct: 521 IFNNKQGR 528 >gi|261417258|ref|YP_003250941.1| Eco57I restriction endonuclease [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373714|gb|ACX76459.1| Eco57I restriction endonuclease [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327556|gb|ADL26757.1| putative type II DNA modification methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 492 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 92/283 (32%), Gaps = 37/283 (13%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 I + + + F T + +L ++ D G+G Sbjct: 11 EFIAQMPKSLRKEYGQFFTSAETACFMASLFDL-------SGLNKSVSILDAGAGSGILA 63 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSKN--I 276 + S K+ + E +P + + + + ++ ++ + + N I Sbjct: 64 ISIAERILKQDSSIKVEVVCY----ENDPHVLPLLKSNLDLVKKKYKNFSFKVIEDNYII 119 Query: 277 QQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 Q + + +LF K++ + NPP+ K + +A+ G P + Sbjct: 120 SQRDSFNGNLFAQECKKYDLVIGNPPYKKISKDAPEALAMPVVC-------HGAP---NL 169 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI--VA 392 LF L+ G+ + S + A R++L+ N +E I Sbjct: 170 YFLFASMGIFNLKE----NGQMVYITPRS--WTSGAY--FENFRKYLIGNTSLERIHLFE 221 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 TD+F + ++ I +K ++ KV + R Sbjct: 222 SRTDVFDKESVLQETMIFKLKKQKKHPSKVVISTTNGNGDFSR 264 >gi|291295623|ref|YP_003507021.1| putative type II DNA modification enzyme [Meiothermus ruber DSM 1279] gi|290470582|gb|ADD28001.1| putative type II DNA modification enzyme [Meiothermus ruber DSM 1279] Length = 1336 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 37/167 (22%) Query: 154 VMSNIYEHLIR----------RFG-----SEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198 + ++YE L+ F + + TP +V + L+P A Sbjct: 416 ELGSVYEQLLELVPEVDVAAAHFALQNRSGNERKTTGSYYTPDALVQVVLDEALEPRLAE 475 Query: 199 FKESPGMIR-----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------------- 238 ++P R + DP G+G FL A + +A + + Sbjct: 476 ALKTPDPERALLSLRVVDPAVGSGHFLIAAAHRMARALARIRSGEDEPSPEAQRSALRDV 535 Query: 239 -ILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLS 283 +G ++ + +C + + E P L +I+ G++L Sbjct: 536 IRHCLYGVDVNEMSAELCKVALWMEMAEPGKPLGFLDHHIKVGNSLL 582 >gi|295099195|emb|CBK88284.1| DNA methylase [Eubacterium cylindroides T2-87] Length = 3253 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 100/359 (27%), Gaps = 78/359 (21%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 ++ NA AI + + +A E+ +L + + G+ + YE L Sbjct: 1668 EKYAANAAAIRTLKQIEAEERLATPEEQEILSRYVG-WGGLANCFEQTSPH-----YEEL 1721 Query: 163 IR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 + + + F TP V+ + + +P+CGTG Sbjct: 1722 KSLLDSEEYAAARASSLTAFYTPPVVIR--------GIYKALAQMGFTQGNILEPSCGTG 1773 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 FL +G EL+ + + + + NI Sbjct: 1774 NFLGLL----------PTDLAGSKAYGVELDSISGRIA------------GQLYQNANIS 1811 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + F + N PFG ++ +K H FG Sbjct: 1812 V-NGFETVQMPDSFFDVAVGNVPFG-DFKVLDKRYDKHHWLIHDYFFG------------ 1857 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 K GG A + S L S +R++L + + + LP + Sbjct: 1858 -------KTLDKVRLGGIVAFITSKGTLDKEN-----SSVRKYLAQRADLIGAIRLPDNT 1905 Query: 398 F---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 F T + + + L R + ++ + G + IL Sbjct: 1906 FKRNAGTEVTSDIIFLQK------RDHITDLDQDWVHLDTDENGIRMNRYFVQHPEMIL 1958 >gi|296125549|ref|YP_003632801.1| D12 class N6 adenine-specific DNA methyltransferase [Brachyspira murdochii DSM 12563] gi|296017365|gb|ADG70602.1| D12 class N6 adenine-specific DNA methyltransferase, putative [Brachyspira murdochii DSM 12563] Length = 1047 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 83/284 (29%), Gaps = 54/284 (19%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I + + + + + YE + ++ E+ E + TP+ VV+ + Sbjct: 290 IVEELNKYDNTVSQKDPYM--HFYETFLYKYNPELRELRGVYYTPQSVVNFIIDSIDIVL 347 Query: 196 DALFKESPGMIR--------TLYDPTCGTGGFLTDAMN-----HVADCGSHHKIPPILVP 242 F ++ G+ TL D GTG FL D+ + + ++ I Sbjct: 348 KEYFNKNKGLGDALEKETNITLLDFAAGTGTFLLDSFRKALSYYQKNSVKYNPKELINKF 407 Query: 243 HGQELEPETHAVC---VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH------ 293 +G E + + ++ L + D NI +TL + Sbjct: 408 YGFEFMIAPYTIAHLKISQTLKEEFNYNLEDDERLNIFLTNTLENIDLDESKGKNNIFEE 467 Query: 294 -----------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-- 334 NPP+ E+ K + G P L +G Sbjct: 468 LNEEMNLAQKTKEKEILIITGNPPYSGASANKGIFEEEVRKEYKDGLESPPLAITRNGKV 527 Query: 335 -----------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 + + A + GG + ++S L N Sbjct: 528 EKEKNPKWLLDDYVKFIRFAQQKIDNQKAGGIFGFISNNSFLDN 571 >gi|87198379|ref|YP_495636.1| putative type II DNA modification enzyme [Novosphingobium aromaticivorans DSM 12444] gi|87134060|gb|ABD24802.1| putative type II DNA modification enzyme [Novosphingobium aromaticivorans DSM 12444] Length = 1319 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 50/213 (23%) Query: 154 VMSNIYEHLI---------RRFGSEVS------EGAEDFMTPRDVVHLATALLLDPDDAL 198 + ++YE L+ F + + + TP +V L+P Sbjct: 422 ELGSVYEGLLEIRPSLTASGDFQLGTGAKGNDRKTSGSYYTPDSLVECLLDSALNPVLER 481 Query: 199 FKESPGMIR---------TLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILV--- 241 + S + DP CG+G FL A +AD Sbjct: 482 AEASGVTPEEKVAAILDLKVIDPACGSGHFLLGAARRMADRVARLRNEDAGKEETQAALR 541 Query: 242 ------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL--------SKDL 286 HG + P + + I + P L NI+ G L ++ Sbjct: 542 DVVSRCIHGVDRNPMAVELAKVALWIESVSPGQPLGFLDANIRCGDALLGVFDLAVLEEG 601 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + + + K K + ++ K G Sbjct: 602 IPDEAYKPLTGD---SKDAAKFYLKLNRDAKKG 631 >gi|325995949|gb|ADZ51354.1| hypothetical protein hp2018_06581 [Helicobacter pylori 2018] gi|325997543|gb|ADZ49751.1| hypothetical protein hp2017_06571 [Helicobacter pylori 2017] Length = 1449 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 86/307 (28%), Gaps = 35/307 (11%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ IA D D L+ LY+ K + + + + Sbjct: 813 GDNIQNPIAKALDKMVLKLSDLGLEGETKDLKN---LYESVKTEAARAKSQKSQQEL-IK 868 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 869 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 928 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ ++ D S K ++ ++ + + + D Sbjct: 929 TGSFIARLLSKENDLISDEALKEKFQNHLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 988 Query: 274 KNIQQGSTL-----SKDL------------------FTGKRFHYCLSNPPFGKKWEKDKD 310 KNI +L D + + NPP+ + + D Sbjct: 989 KNIALTDSLDYLEEKNDKGVFPLFADLKENQEIKTTMEKQNIRVIIGNPPYSSGAKSEND 1048 Query: 311 -----AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + K K K+ + L+ G V++ S + Sbjct: 1049 NNQNLSHPKLEKKVYETYGKNSTAKVGATTRDTLIQSIRMASDLLKDKGVLGFVVNGSFI 1108 Query: 366 FNGRAGS 372 + A Sbjct: 1109 DSKSADG 1115 >gi|208435250|ref|YP_002266916.1| adenine specific DNA methyltransferase [Helicobacter pylori G27] gi|208433179|gb|ACI28050.1| adenine specific DNA methyltransferase [Helicobacter pylori G27] Length = 1122 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 90/320 (28%), Gaps = 39/320 (12%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + + Y + + F + + N R+++ Sbjct: 193 SSIFKNFKEYL---YEELSCEDFSDAFAQTLTYSLFIAKLNHPFEKIDLNNVRSSIPK-- 247 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPDRVMSNIY 159 N I E DF + ++ LL +I + +++ + Y Sbjct: 248 -----NFAVIREMADFLKRLDAIKDIQWLLNEILSLINHVDMDSILKDLNDDKDPYLHFY 302 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------GMIRTLYD 211 E + + ++ E + T VV L FK++P D Sbjct: 303 ETFLSAYDPKLREKKGVYYTQDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKPLD 362 Query: 212 PTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAVCVAGM-- 259 GTG FL +A + + +G E +A+ + Sbjct: 363 FATGTGTFLLEAFRKALEVRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLSQ 422 Query: 260 -LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + + + + I +TL + + Y NP F K+ ++ + E+ Sbjct: 423 AFKEEFKKSLKENDALKIILTNTLIQP---SEIIAYRGLNPIFEKELSNAQEIKKNENIL 479 Query: 319 GELGRFGPGLPKISDGSMLF 338 G + G + Sbjct: 480 IITGNPPYSGASENKGLFEW 499 >gi|13488153|ref|NP_085860.1| DNA methylase [Mesorhizobium loti MAFF303099] gi|14028109|dbj|BAB54701.1| DNA methylase [Mesorhizobium loti MAFF303099] Length = 1011 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 79/281 (28%), Gaps = 58/281 (20%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + S TP ++ A + + +P GTG F Sbjct: 150 QEYASLARCTQYAHFTPEFIIRAIW--------AGLQRLGWRGGRVLEPGIGTGLFPALM 201 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + G E++P T + I G S Sbjct: 202 PE---------DRRGVSHVTGVEIDPVTARIAR------------LVQPRARIVNGD-FS 239 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F + NPPF + + F+ Sbjct: 240 CTDLPAY-FDLAIGNPPFSNRTVRSDRTYRSMGLRLHDY---------------FIARSV 283 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 + L+ G AA V S +G +S R+ + ++ + A + LP F Sbjct: 284 DLLKP----GALAAFVTS-----SGTMDKTDSIARKHIAKSADLIAAMRLPEGSFRTDAG 334 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 T++ + RK E G + ++ ++ + ++EG R Sbjct: 335 TDVVVDILFFRKRKVTEPEGDLSWLDIEEVRQATQDEGAIR 375 >gi|291541463|emb|CBL14573.1| DNA methylase [Ruminococcus bromii L2-63] Length = 2058 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 57/415 (13%), Positives = 112/415 (26%), Gaps = 92/415 (22%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 ++ LE ++ + + +D ++F + + Sbjct: 971 YIQKLLEQEKTELLPE-EKTEAPAVD--------RHNF---------RINDDAIG--VGG 1010 Query: 103 YIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSN 157 F +N AI + + + +A E+ +L + + G+ + D Sbjct: 1011 AKEKFRNNMAAINLLHELEIENRLATPEEQEVLSQYVG-WGGLSMAFDEHNAAWAEEFKE 1069 Query: 158 IYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +Y L + + + F TP V+ L S G + +P+CGT Sbjct: 1070 LYASLSPEEYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGT 1121 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G F + HG E++ T + + NI Sbjct: 1122 GNFFGLLPESMQ----------NSKLHGVEIDSLTGRIAK------------QLYQKANI 1159 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 K F L N PFG+ D ++ + Sbjct: 1160 AIE-GFEKTNLPDNHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------- 1203 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 K G + S + E+R+++ + + + LP + Sbjct: 1204 -----FFAKALDKVRAGSVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDN 1253 Query: 397 LF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 F T + + + IL R +V I + G + Sbjct: 1254 TFKANAGTEVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 1302 >gi|328948587|ref|YP_004365924.1| SNF2-related protein [Treponema succinifaciens DSM 2489] gi|328448911|gb|AEB14627.1| SNF2-related protein [Treponema succinifaciens DSM 2489] Length = 2901 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 97/361 (26%), Gaps = 77/361 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP +++ L+ +T+ +P+ G G F Sbjct: 705 AFYTPDNLIEKVWELVDAYAPDA--------KTVLEPSAGVGKF--------------AN 742 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P EL+ + + ++ + + + G K + + Sbjct: 743 NRPDNKFTMHELDETSARI---NKILHPEADVIQGAFQKQFLDDGERFLKIGYEQSKHDV 799 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 + NPP+GK +K K E + F +A L+ + Sbjct: 800 VIGNPPYGKYNDKYKGLGEGREFDRYEEYF-----------------IARGLDALKDEKS 842 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414 A V+ S L ++ + I LP F T + T + I+ ++ Sbjct: 843 VLAFVVPSGFLSTADDRQ-----KKVIASKGEILDAYRLPEGTFSTTEVGTDILIMRKKE 897 Query: 415 TEERRGKV---QLINATDL-----------WTSIRNEGKKRRII--------------ND 446 + R + L + T GKK + D Sbjct: 898 NLDDRENISSELLSDGEWFKNHPEKILGEVKTRTNRFGKKEEYVAVHEGLSVQDELNKID 957 Query: 447 DQRRQILDI-YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505 +I ++ + S + + + P + + RL T Sbjct: 958 SFVDEIKKANQTEKKEAEKSFETQLDEYNRKYWGPVGPGDTRYDISPVTDERLSEIKTLS 1017 Query: 506 K 506 K Sbjct: 1018 K 1018 >gi|255067377|ref|ZP_05319232.1| conserved hypothetical protein [Neisseria sicca ATCC 29256] gi|255048347|gb|EET43811.1| conserved hypothetical protein [Neisseria sicca ATCC 29256] Length = 262 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 159 YEHLIRRFGSE---VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 YE + + +E + TP V + L+ ++ +L +P CG Sbjct: 88 YEDFLGELYMDLGASNERNGQYFTPMAVSRVMAKLVGIDTAEKLEKQ--RFVSLLEPCCG 145 Query: 216 TGGFLTDAMNHVADCGS 232 +G L H+AD G Sbjct: 146 SGANLLAFAEHIADSGK 162 >gi|291541334|emb|CBL14445.1| DNA methylase [Roseburia intestinalis XB6B4] Length = 2753 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 72/259 (27%), Gaps = 59/259 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F TP V+ L S G ++ +P+CGTG F Sbjct: 1244 EEYRAAMESTLTAFYTPPVVIKGMYEAL-----DRLGFSEG---SILEPSCGTGNFFGLL 1295 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +A HG E++ T + + NI Sbjct: 1296 PDSMAGSK----------LHGVEIDELTGRIA------------GQLYQKANIAVQ-GFE 1332 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHL 342 + F + N PFG R+ + L + Sbjct: 1333 ETKLPDDHFDVVIGNVPFG-------------DFKVNDSRY--------NAQKFLIHDYF 1371 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401 K GG A + S + E+R+++ + + + LP + F Sbjct: 1372 FAKALDKVRTGGVVAFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFRANA 1426 Query: 402 NIATYLWILSNRKTEERRG 420 IL +K++ Sbjct: 1427 GTEVTSDILFLQKSDRITD 1445 >gi|225032080|gb|ACN79573.1| ApyPI [synthetic construct] Length = 948 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 74/282 (26%), Gaps = 71/282 (25%) Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--- 195 + + + V ++++ + + E G + T + + L + Sbjct: 314 LLNACDFDWSKIDVSVFGSLFQLVKSK---EARRGDGEHYTSKTNILKTIGPLFLDELRA 370 Query: 196 -DALFKESPG-------------MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233 +P DP CG G FL A + + Sbjct: 371 QADKLVSNPATPVRKLEEFRDSLAAHIFCDPACGAGNFLLTAYKELRRIETDLIVAIRQR 430 Query: 234 ------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------- 273 + I +G EL + M + +++ + Sbjct: 431 RGETGMSLNIEWEQKLSIGQFYGFELNWWPAKIAETAMFLVDHQANKELANAVGRPPQRL 490 Query: 274 -----KNIQQGSTLSKDLFTGKRF----HYCLSNPPFG---KKWEKDKDAVEKEHKNGEL 321 +I G+ L+ D + NPPF + ++ + ++ + + Sbjct: 491 PITITAHIVHGNALALDWTEALPKAVGETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKNI 550 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 R L+L GR A V ++S Sbjct: 551 SRLDYVT-----------CWHIKSLDLFSTRNGRFAFVTTNS 581 >gi|160884359|ref|ZP_02065362.1| hypothetical protein BACOVA_02337 [Bacteroides ovatus ATCC 8483] gi|255691674|ref|ZP_05415349.1| helicase domain protein [Bacteroides finegoldii DSM 17565] gi|156110098|gb|EDO11843.1| hypothetical protein BACOVA_02337 [Bacteroides ovatus ATCC 8483] gi|260622746|gb|EEX45617.1| helicase domain protein [Bacteroides finegoldii DSM 17565] Length = 1651 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 68/254 (26%), Gaps = 32/254 (12%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213 + N+YE + E TP + V + D F S + DP Sbjct: 868 IKNLYEKFFKGAFPLTVEKLGIVYTPVECVDFIIHSVNDILKREFNTSLSDENVHILDPF 927 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRD 271 GTG F+T + + H E+ + + + + L Sbjct: 928 TGTGTFITRLLQSGLIKPEDMERKYRNEIHCNEIVLLAYYIADVNIEAVYHDLMKPDHYV 987 Query: 272 LSKNIQQGST----------LSKDLFTGKR----------FHYCLSNPPFGKKWEKDKDA 311 I T LS++ F + NPP+ + D Sbjct: 988 NYDGICLTDTFQLAETKQQSLSQEFFKENSEGVLRQKKAPIRVIIGNPPYSIGQKSANDN 1047 Query: 312 VEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLE-----LPPNGGGRAAIVLSSS 363 R S ++ L+ ++ + GG A + + S Sbjct: 1048 AANMTYPVLDKRVSDTYAAKSSANLTKALYDSYIKAFRWATDRIADNSDGGIVAFISNGS 1107 Query: 364 PLFNGRAGSGESEI 377 L +G A G Sbjct: 1108 WL-DGNAQDGFRAC 1120 >gi|307637357|gb|ADN79807.1| hypothetical protein hp908_0680 [Helicobacter pylori 908] Length = 1622 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 86/307 (28%), Gaps = 35/307 (11%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ IA D D L+ LY+ K + + + + Sbjct: 813 GDNIQNPIAKALDKMVLKLSDLGLEGETKDLKN---LYESVKTEAARAKSQKSQQEL-IK 868 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 869 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 928 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ ++ D S K ++ ++ + + + D Sbjct: 929 TGSFIARLLSKENDLISDEALKEKFQNHLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 988 Query: 274 KNIQQGSTL-----SKDL------------------FTGKRFHYCLSNPPFGKKWEKDKD 310 KNI +L D + + NPP+ + + D Sbjct: 989 KNIALTDSLDYLEEKNDKGVFPLFADLKENQEIKTTMEKQNIRVIIGNPPYSSGAKSEND 1048 Query: 311 -----AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + K K K+ + L+ G V++ S + Sbjct: 1049 NNQNLSHPKLEKKVYETYGKNSTAKVGATTRDTLIQSIRMASDLLKDKGVLGFVVNGSFI 1108 Query: 366 FNGRAGS 372 + A Sbjct: 1109 DSKSADG 1115 >gi|325923272|ref|ZP_08184946.1| putative helicase [Xanthomonas gardneri ATCC 19865] gi|325546251|gb|EGD17431.1| putative helicase [Xanthomonas gardneri ATCC 19865] Length = 1417 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 48/374 (12%), Positives = 97/374 (25%), Gaps = 56/374 (14%) Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 N + + + + L Y K + V+ +Y+ R + Sbjct: 820 NVLDVLDAQNLQKEASTLRG---FYASVKLRAEGIDSAVGKQKIVV-ELYDKFFRNAFPK 875 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVA 228 ++E TP +VV + F ++ G + DP GTG F+T + Sbjct: 876 MTERLGIVYTPVEVVDFILHSVDHLLRKEFGQTLGSPGVHILDPFTGTGTFITRLLQSGL 935 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDL 286 H EL + + + + + I T Sbjct: 936 IKPEELAHKYKHEIHANELVLLAYYIAAINIEATYHGIAGGDYA-PFEGICLTDTFQMYE 994 Query: 287 FTG------------------KRFHYCLSNPPFGKKWEKDKD--------AVEKEHKNGE 320 + NPP+ + + D A+++ ++ Sbjct: 995 KEDLVDQLLVDNSRRRKRQKALDIRVIVGNPPYSVGQKSENDNNDNVEYVALDERIRSTY 1054 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 R L S G + G V ++ L A +R+ Sbjct: 1055 AARSQATL---SKGLYDSYIRAIRWASDRIGNAGVLGFVTNAGFLEANTADG----LRKC 1107 Query: 381 LLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLI 425 L E + L + +F + + +L ++ G++ Sbjct: 1108 LAEEFSDIYVFHLRGNQRTSGETSRKEGGKIFGSGSRAPIAISLLVKNPHAKQHGRIFFH 1167 Query: 426 NATDLWTSIRNEGK 439 + D + K Sbjct: 1168 DIGDYLSREDKLEK 1181 >gi|172039713|ref|YP_001799427.1| putative methylase [Corynebacterium urealyticum DSM 7109] gi|171851017|emb|CAQ03993.1| putative methylase [Corynebacterium urealyticum DSM 7109] Length = 646 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 54/217 (24%), Gaps = 57/217 (26%) Query: 167 GSEVSEGAEDFMTP-----RDVVHLATALLLDPDDALFKESPGMI------------RTL 209 E + T + + L L D L + Sbjct: 336 SKEARRDDGEHYTSEKNILKTIGPLFLDELRAEADRLIAAKSTPVAKLRAFRDSLADMVF 395 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH--------------------HKIPPILVPHGQELEP 249 DP CG+G FL A + + + I +G EL Sbjct: 396 CDPACGSGNFLIVAYRELRKIETDVIVAIREREGTTDLALDISWEQKLSIGQFYGIELNW 455 Query: 250 ETHAVCVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLF----TGKRF 292 + M + +++ + +I+ + L+ D Sbjct: 456 WPARIAETAMFLVDHQANRELADRVGLAPDRLPISITAHIEHANALAVDWLEILPEAAGM 515 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGP 326 Y NPPF ++ K + E + N G Sbjct: 516 TYIFGNPPFIGQYTKTSEQTEDMRRVWGNDYDGYLDY 552 >gi|254166687|ref|ZP_04873541.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469] gi|289596069|ref|YP_003482765.1| N-6 DNA methylase [Aciduliprofundum boonei T469] gi|197624297|gb|EDY36858.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469] gi|289533856|gb|ADD08203.1| N-6 DNA methylase [Aciduliprofundum boonei T469] Length = 967 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 55/362 (15%), Positives = 111/362 (30%), Gaps = 70/362 (19%) Query: 114 IFEDFDFSSTIARLEKAGLLYKICK-------NFSGIELHPDTVPDRVMSNIYEHLIRRF 166 I FD + I + L +I + F ++ P+ + I+ I Sbjct: 223 ILSGFDIRN-ITKEGIRELFRRITEINYRPIYKFDILDTIPEHYIKDTFTLIWNLKIENI 281 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES---PGMIRTLYDPTCGTGGFLTDA 223 E+ + P+++ + A P A ++DP CG+G LT A Sbjct: 282 RFELPGRLFHELMPKEIKKMLAAFYTRPIAAEILSCVTINNAEEVVFDPACGSGTILTAA 341 Query: 224 MNHVADCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + + P +G ++ P + A + NI + Sbjct: 342 YRRKRELWNKQEDPHKLFCEEQIYGTDIMPFAVNLTTANLASLN---PKITIEKMNIARA 398 Query: 280 STL---------------------------SKDLFTGKR------FHYCLSNPPFGKKWE 306 +L SK++ + L NPPF K Sbjct: 399 DSLKLELNVPIKNGLSKLERYGIPISSNIKSKNMQGDEYDMVLDLMDVVLMNPPFTKIER 458 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 K ++ E +G G + H ++ G V+ + L Sbjct: 459 GVKKYIKIERFKSRVG-----------GEIGLWGHFIALADMILKPNGMFGGVIPINIL- 506 Query: 367 NGRAGSGESEIRRWLLENDLI-EAIVALPTDL-FFRTNIATYLWILSNR-KTEERRGKVQ 423 ESE R ++ + + ++ + F ++ + I++ + K++ KV+ Sbjct: 507 ----RGRESEKVRKIVFEEWLPLYVIKSTMNYGFSESSEYRDILIIAKKTKSKPINHKVK 562 Query: 424 LI 425 + Sbjct: 563 FV 564 >gi|332673515|gb|AEE70332.1| helicase domain protein [Helicobacter pylori 83] Length = 1380 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 97/369 (26%), Gaps = 54/369 (14%) Query: 43 RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RL+ E + SNI + + + TS + +N Sbjct: 527 RLKDIFEKNPEIFHGFLDSLKGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 580 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 +++ I+ D L+ LY+ K + ++ N+Y Sbjct: 581 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 636 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218 + + SE TP +VV + T++DP GTG Sbjct: 637 NTFFKVAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 696 Query: 219 FL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 F+ + + K + ++ + + + + D KNI Sbjct: 697 FIARLLSKENGLISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQNRDGSLKNFKNI 756 Query: 277 QQGSTLS-----------------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 +L KD K + NPP+ + + + Sbjct: 757 ALTDSLDFYEEKNDKGVFDLFKDLKENKEIKDTLADKNIRVIIGNPPYSAGAKSQNNNNQ 816 Query: 314 K----------EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K G+ G+ D L+ G V++ S Sbjct: 817 NLSHPKLEKKVYEKYGKNSTAKVGVT-TRDT----LIQSICMASELLKDRGVLGFVVNGS 871 Query: 364 PLFNGRAGS 372 + + A Sbjct: 872 FIDSKSADG 880 >gi|161617579|ref|YP_001591544.1| hypothetical protein SPAB_05438 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366943|gb|ABX70711.1| hypothetical protein SPAB_05438 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 227 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 43/216 (19%) Query: 94 TNTRNNLESYIASFSDNAK-----AIFEDF--------------------DFSSTIARLE 128 N N+ +++I+ F+ A+ +FEDF + +AR E Sbjct: 2 KNLINHEKAFISLFNQTARYHHRHQVFEDFISCSVIALQNALSFCEKREQKYLRIVARYE 61 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 K ++ + + + + D P + ++ L + F TP DV + Sbjct: 62 KKDVVR-MAELLAHVVNGLDDSPGDFLGQVFMQL-----ELGDKYRGQFFTPWDVGIMMA 115 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 + L F + P + TL +P CG G + D G + +++ Sbjct: 116 RMQLGNVADNFADKPFI--TLAEPACGAGCMALAFATVLRDAGYSPHRYLWVSAT--DID 171 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 P + + + + + + G++L Sbjct: 172 PLAAGMAYIQLTLCGVPGE--------VVIGNSLCD 199 >gi|116326651|ref|YP_796570.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116109019|gb|ABJ74139.1| DNA or RNA helicase of superfamily II [Lactococcus lactis subsp. cremoris SK11] Length = 1560 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 85/305 (27%), Gaps = 43/305 (14%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 E F+ LE LY+ + +++ +Y+ + +E Sbjct: 800 LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKSTTERL 855 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232 TP +VV + D F ++ + DP GTG F+ +N++ + Sbjct: 856 GIVFTPIEVVDFIIHSVDDVLKKHFGKALASKDVHILDPFTGTGTFIVQTLNYLKEQMDA 915 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282 H E+ ++ + + E + + I T Sbjct: 916 GKTSLAEITRKFTQELHANEIVLLSYYIAAINIEATFDEINGEEKGYVPFEGIVLTDTFE 975 Query: 283 ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKD-----AVEKEHKNG 319 ++D F + NPP+ K D D + K+ Sbjct: 976 SAETEDTLDDDYFGTNDARLKRQQEVPITAIIGNPPYSKGQSNDNDNNKNLEYPELFKSV 1035 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 G + NG G A V + S + + A +R+ Sbjct: 1036 ANTYVKHSKTSSVLGMYDSYVLSIRWASNRLNGKGVVAFVSNGSYIDSQSADG----LRK 1091 Query: 380 WLLEN 384 L E Sbjct: 1092 SLYEE 1096 >gi|296137341|ref|YP_003644583.1| type III restriction protein res subunit [Thiomonas intermedia K12] gi|295797463|gb|ADG32253.1| type III restriction protein res subunit [Thiomonas intermedia K12] Length = 1676 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 94/336 (27%), Gaps = 46/336 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGT 216 +Y+ R +++E TP +VV + + F ++ G + DP GT Sbjct: 896 LYDKFFRNAFPKMTERLGIVYTPVEVVDFILHSVAHLLQSEFGQTLGSPGVHILDPFTGT 955 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSK 274 G F+T + H E+ + + + + + + Sbjct: 956 GTFITRLLQSGLIEPEQLPAKYKSEIHANEIVLLAYYIAAINIEAVYHGI-VGGDYQPFE 1014 Query: 275 NIQQGSTL------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 I T + + NPP+ + D E Sbjct: 1015 GICLTDTFQLYEKEDLIDALLEKNSARRKRQKKLDIRVIVGNPPYSDGQDSANDINENIE 1074 Query: 317 KNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 R + SD M L+ ++ G V ++ L A Sbjct: 1075 YPHLDARIRSTYAERSDIRMVRSLYNSYIRAIRWASDRIGNAGVIGFVTNAGFL---SAI 1131 Query: 372 SGESEIRRWLLENDLIEAIVALP--------------TDLF-FRTNIATYLWILSNRKTE 416 S + +RR L E ++ L ++F + + +L Sbjct: 1132 SSDG-MRRCLAEEFSSLYVLHLRGNARTSGELRRKEKDNVFGMGSRAPIAITLLVKNPAA 1190 Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 GK+ + D + + +++ + ++ Sbjct: 1191 AHPGKIHFHDIGDYLSKEEKLAEVQKLYSIKGIGEV 1226 >gi|303233580|ref|ZP_07320238.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4] gi|302495324|gb|EFL55072.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4] Length = 3641 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 59/399 (14%), Positives = 121/399 (30%), Gaps = 72/399 (18%) Query: 31 FGKVILPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 + + LPF+ L+ ++ L R +K L + + ++ + Sbjct: 1769 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNNLIRTDRENIEG 1828 Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 SE SL N NL ++ A + + + + AR ++ +L K Sbjct: 1829 VSEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGG 1888 Query: 142 GIELHPDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 ++ + + + E+L + F TP+ V+ Sbjct: 1889 LSDIFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE-------- 1940 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 + +P+ GTG F+ + + + +G EL+ + + Sbjct: 1941 SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK- 1989 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + NI Q + F+ F + N PFG + ++E++ Sbjct: 1990 -----------ELYPNSNI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKVADREYE 2032 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L + K GG A + +G ++ Sbjct: 2033 RN---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDV 2072 Query: 378 RRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 RR++ E + LP F T + + + L R Sbjct: 2073 RRYISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKKR 2111 >gi|300781907|ref|YP_003739142.1| hypothetical protein EbC_pEb10200850 [Erwinia billingiae Eb661] gi|299060173|emb|CAX53363.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 226 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 16/168 (9%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A LL + D + +++ L + F TP DV + + Sbjct: 68 AALLGHVVMAI-------DQERCDFLGSVFMEL-----ELGDKYRGQFFTPWDVSQMMAS 115 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + L DAL + + TL +P G G + A G + +++P Sbjct: 116 MQLSGIDALMQAQDFI--TLQEPASGAGCMVIAFAEEFAKRGYTVSEQLWVSVT--DVDP 171 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 + + + + ++ + +++ TL L R+ L Sbjct: 172 LAANMSYIQLSLCGIAAEVVTGHALTLERRRTLYTPLHYTGRWAVKLG 219 >gi|90581558|ref|ZP_01237350.1| hypothetical protein VAS14_00096 [Vibrio angustum S14] gi|90437223|gb|EAS62422.1| hypothetical protein VAS14_00096 [Vibrio angustum S14] Length = 1587 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 89/295 (30%), Gaps = 70/295 (23%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRR-------FGSEVSEGAEDFMTPRDVVHLA 187 +I NF+G + L+R F + + F TP+ ++ Sbjct: 49 EIIDNFNGFGEISEAFNQDHKDY---DLLRSCFVSDKAFQTARASTPTSFYTPKFIIDSM 105 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L+ + G + +P+CGTG + V EL Sbjct: 106 YRCLV-----RLGFNEG---NIIEPSCGTG-------RFIKSLPDTINAKVTAV----EL 146 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 + + + L+ +N++ K F ++N PF Sbjct: 147 DETSGRLAR---LLNPKAKILINQRFENVKL----------DKNFSLAITNVPFSSNKAM 193 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 K+ ++ + + K + GG A+V+S+ L Sbjct: 194 TKELLDTSNLHSY---------------------FIAKALHSVHNGGFVAVVVSTWLL-- 230 Query: 368 GRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRG 420 S ++ R+ + + + A LP ++F T+ + + I K R Sbjct: 231 ---DSISNKNRKAIFKAGGELVAGARLPNNVFKGTSTSADVLIFQKVEKPMNRAW 282 >gi|255015071|ref|ZP_05287197.1| putative helicase [Bacteroides sp. 2_1_7] Length = 1000 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 48/214 (22%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP ++ +L P + D CG G F Sbjct: 60 EYAEAKKEFEMGQFFTPHEICRDMVDML----------CPVSSEMVLDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +P +G +++ + +V +I++ Sbjct: 107 ----------NHLPNPHNAYGFDIDGKAVSVAR------------YLYPEAHIEKCD--I 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + +RF + NPPF K+ K + E G+ L ++ Sbjct: 143 RQYYPEQRFDVIIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPAGI--------LMVIVPC 193 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + ++ R A + + F G+ G S Sbjct: 194 SFMQSGFWEKTRIAGI-NGRFSFVGQTKLGPSAF 226 >gi|240147298|ref|ZP_04745899.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82] gi|257200514|gb|EEU98798.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82] Length = 1438 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 95/357 (26%), Gaps = 70/357 (19%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN-IYEH 161 F N +AI E + S +A E+ +L + + ++ + + Sbjct: 84 EKFRRNVEAIRMLEQIESESRLATPEEQKILSQYVGWGGLADAFDESKSAWAVEYRELKE 143 Query: 162 LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ + S T ++ + + +P G G F Sbjct: 144 LLSDAEYASARESTLNAHYTSPMIIRSIYE--------ALENMGFEKGNVLEPAMGIGNF 195 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + +G EL+ T + + +I+ Sbjct: 196 FGMLPEKMQE----------SRLYGVELDGITGRIAK------------QLYPKVDIK-I 232 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + K + F + N PFG+ DK + + Sbjct: 233 TGFEKTDYPNDFFDVAIGNVPFGQYKVADKQYDKNNFLIHDY------------------ 274 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 K GG A V S + E+R++L + + V LP F Sbjct: 275 --FFAKTLDKVRPGGVVAFVTSKGTMDKKSP-----EVRKYLAQRAELLGAVRLPNTAFK 327 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 T + + + L R +V + + S G + I+ Sbjct: 328 ENAGTEVTSDILFLKK------RDRVMDLEPEWVHLSEDENGIAMNSYFVEHPEMIV 378 >gi|224024763|ref|ZP_03643129.1| hypothetical protein BACCOPRO_01491 [Bacteroides coprophilus DSM 18228] gi|224017985|gb|EEF75997.1| hypothetical protein BACCOPRO_01491 [Bacteroides coprophilus DSM 18228] Length = 1111 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 67/369 (18%), Positives = 112/369 (30%), Gaps = 74/369 (20%) Query: 104 IASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + S S N KAI A E+ +L + F GI+ D D+ + Sbjct: 6 LTSLSANIKAIETAVAIRIQGRTATQEEKTILAQY-SGFGGIKDVLDLGTDKPLDKGVSE 64 Query: 162 LIRRFGSEVSEGAE-------------------DFMTPRDVVHLATALLLDPDDALFKES 202 L+ R + A F TP + F + Sbjct: 65 LLNRLLDALRTLAGGDEAACRSLVESIKSSVLTTFYTP----QFLIDAVAAQIHGTFFAN 120 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + + +P+ G GGFL AM P TH I Sbjct: 121 DLQMHSFLEPSAGIGGFLPVAM------------------------PGTHNYAFEKDTIT 156 Query: 263 RLESDPRRDLSKNIQQG-STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 L + + I G T+ ++F SN PFG + K G Sbjct: 157 GLVLSLLYEDATTITAGFETIDTQELEHRKFDVIASNIPFG----NFRVFDADLWKKG-- 210 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 G + I + F+ + + GG A V S +G +R +L Sbjct: 211 GIYEQATKTIHN--YFFVKAM-----ELLSEGGLLAFVTSRGVADT----AGNRFVREYL 259 Query: 382 LENDLIEAIVALPTDLFFRTN---IATYLWILSN--RKTE-ERRGKVQLINATDLWTSIR 435 + + + + + LP LF +T+ + + L I K R ++ L A +++ Sbjct: 260 VNHADLVSAIRLPDALFMQTSGIEVGSDLLIFQKHTNKAALSAREQMFLQVAKEMYDMNG 319 Query: 436 NEGKKRRII 444 + + Sbjct: 320 TMTENANRL 328 >gi|237712978|ref|ZP_04543459.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237717780|ref|ZP_04548261.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|256842587|ref|ZP_05548088.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262409571|ref|ZP_06086112.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446953|gb|EEO52744.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229452879|gb|EEO58670.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|256735724|gb|EEU49057.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262352585|gb|EEZ01684.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 241 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 45/133 (33%), Gaps = 18/133 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ +++ + F TP V L + + +++ D Sbjct: 74 DVLGDMFMECVSH------GNNGQFFTPIHVADLMACMG--------ENRLKPKQSVCDS 119 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L A+ A+ ++ +G +++ + V +++ + + Sbjct: 120 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 175 Query: 273 SKNIQQGSTLSKD 285 + +Q + D Sbjct: 176 TLTMQHWRSYHID 188 >gi|69244404|ref|ZP_00602820.1| conserved domain protein [Enterococcus faecium DO] gi|258614769|ref|ZP_05712539.1| adenine-specific methyltransferase [Enterococcus faecium DO] gi|260562412|ref|ZP_05832926.1| conserved hypothetical protein [Enterococcus faecium C68] gi|293560724|ref|ZP_06677203.1| adenine-specific methyltransferase [Enterococcus faecium E1162] gi|293566159|ref|ZP_06678562.1| adenine-specific methyltransferase [Enterococcus faecium E1071] gi|294618784|ref|ZP_06698311.1| adenine-specific methyltransferase [Enterococcus faecium E1679] gi|294622220|ref|ZP_06701280.1| adenine-specific methyltransferase [Enterococcus faecium U0317] gi|314938555|ref|ZP_07845839.1| conserved domain protein [Enterococcus faecium TX0133a04] gi|314940900|ref|ZP_07847806.1| conserved domain protein [Enterococcus faecium TX0133C] gi|314948079|ref|ZP_07851481.1| conserved domain protein [Enterococcus faecium TX0082] gi|314952037|ref|ZP_07855060.1| conserved domain protein [Enterococcus faecium TX0133A] gi|314991918|ref|ZP_07857373.1| conserved domain protein [Enterococcus faecium TX0133B] gi|314995176|ref|ZP_07860290.1| conserved domain protein [Enterococcus faecium TX0133a01] gi|68196345|gb|EAN10773.1| conserved domain protein [Enterococcus faecium DO] gi|260073336|gb|EEW61677.1| conserved hypothetical protein [Enterococcus faecium C68] gi|291590085|gb|EFF21877.1| adenine-specific methyltransferase [Enterococcus faecium E1071] gi|291594972|gb|EFF26322.1| adenine-specific methyltransferase [Enterococcus faecium E1679] gi|291598262|gb|EFF29355.1| adenine-specific methyltransferase [Enterococcus faecium U0317] gi|291605315|gb|EFF34770.1| adenine-specific methyltransferase [Enterococcus faecium E1162] gi|313590585|gb|EFR69430.1| conserved domain protein [Enterococcus faecium TX0133a01] gi|313593502|gb|EFR72347.1| conserved domain protein [Enterococcus faecium TX0133B] gi|313595827|gb|EFR74672.1| conserved domain protein [Enterococcus faecium TX0133A] gi|313600258|gb|EFR79101.1| conserved domain protein [Enterococcus faecium TX0133C] gi|313642112|gb|EFS06692.1| conserved domain protein [Enterococcus faecium TX0133a04] gi|313645495|gb|EFS10075.1| conserved domain protein [Enterococcus faecium TX0082] Length = 335 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 55/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +NA+ + +D+ + E + + + + P+ + Sbjct: 27 SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + A +TP + L L+ + + D G G Sbjct: 82 QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 136 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++++ G + G +++ AV + N+Q Sbjct: 137 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 179 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D + +S+ P G +K + G S Sbjct: 180 --FHQDGLQELLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L ++ G ++ S L ++ EI++W E ++ ++ LP Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278 Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435 +LF + IL + + ++ +V L+ L + Sbjct: 279 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 319 >gi|60680772|ref|YP_210916.1| hypothetical protein BF1252 [Bacteroides fragilis NCTC 9343] gi|60492206|emb|CAH06971.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 1016 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 100/307 (32%), Gaps = 50/307 (16%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +SN+YE I + + E + TP +V L + + G + DP C Sbjct: 280 ISNVYELFIGK---DNQEKEGAYYTPLFLVDYI---LKETIENKLNTQDGYECKVLDPAC 333 Query: 215 GTGGFLTDAMNHV-------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 G+G FL + + + + + K G + + V + + + Sbjct: 334 GSGIFLVETLRKIIEKYIASGVDVKSTEFKNEIKEITKRNIFGIDKDLNAVQVAIFSIYL 393 Query: 262 RRLE----SDPRRDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEK 307 L+ + + D F + +F + + NPP+ Sbjct: 394 TLLDYLDPPAIAEFKFPCLINENFFESDFFNEETEFNILFKDIKFDFIVGNPPWKGGGIG 453 Query: 308 DKDA----VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 D + K+ + +F + ++ + ++ + + A+++ SS Sbjct: 454 DLGSKYLKNRKKREKELSKKFDIAI---NNNEIA--EGFVFRVSDFCSDKTQVALIIRSS 508 Query: 364 PLFN-GRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTN----IATYLWILSNRKT 415 L+N G S R++ LE I+ + L ++F ++N + K Sbjct: 509 SLYNLGYNKKHNSPFRQYWLEEFFIDRVFELAPVRHEVFEKSNDPAIAPAAILFYRYAKG 568 Query: 416 EERRGKV 422 + Sbjct: 569 VNTNNNI 575 >gi|295107188|emb|CBL04731.1| N-6 DNA Methylase. [Gordonibacter pamelaeae 7-10-1-b] Length = 914 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 89/325 (27%), Gaps = 39/325 (12%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA--E 175 F+ L +A L + + + + Y H + ++ Sbjct: 283 FNSPPYFDSLPEA-TLSDLVQ----FNGLLQMCDLDQLDSRYRHRLLEESISSAKRQVSG 337 Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TP + L L + +D CGTG Sbjct: 338 QYPTPEPLARLMAELGVRN----------ATGHAWDCCCGTGTIGKALWERKVKLTEPVM 387 Query: 236 IPPILVPHGQ----ELEPETHAVCVA---------GMLIRRLESDPRRDLSKNIQQGS-- 280 + ++ V +L+ ++ + ++ Sbjct: 388 DDAADRAYRTTWLSDIHDFPLQVATLALSPREHIDSLLLVFQKNAFEVEPGTMVEFIDPS 447 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 T + RF SN P+ K+ + G+ + Sbjct: 448 TGEEVGKAVPRFDTIASNLPYVDFNTKEIGRYSQIKDELRQEARAAGIKLHDRNDL--YC 505 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGS-GESEIRRWLLENDLIEAIVALPTDLFF 399 + LE N GG A ++ S++ LF+ S E ++ +E + F Sbjct: 506 YFCLYLERLLNDGGVACLLTSNTWLFSQAGVSFFEMLALKYQIEGVFVNG----QARWFH 561 Query: 400 RTNIATYLWILSNRKTEERRGKVQL 424 +T + L +L +K + V++ Sbjct: 562 KTKVMNALLVLRKKKPGDTPSDVRM 586 >gi|134296218|ref|YP_001119953.1| hypothetical protein Bcep1808_2116 [Burkholderia vietnamiensis G4] gi|134139375|gb|ABO55118.1| hypothetical protein Bcep1808_2116 [Burkholderia vietnamiensis G4] Length = 663 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 23/138 (16%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP + +L +P + + +P+CG G F+ ++ + Sbjct: 20 KRRGVVYTPVALAQSMCEML----------APSLAERVLEPSCGRGVFVFALLHWQRERH 69 Query: 232 S----HHKIPPILVPHGQELEPETHAVCVAGM----LIRRLESDPRRDLSKNIQQGSTLS 283 +L+P + +A + I R D S N++ G L Sbjct: 70 GLTWEQAARWAERRLFAGDLDP----LALADLAELWAIHFRRHGVRSDFSANLRAGDALF 125 Query: 284 KDLFTGKRFHYCLSNPPF 301 + + +RF L NPP+ Sbjct: 126 E-GYGDERFDAVLGNPPY 142 >gi|223932202|ref|ZP_03624206.1| SNF2-related protein [Streptococcus suis 89/1591] gi|223899183|gb|EEF65540.1| SNF2-related protein [Streptococcus suis 89/1591] Length = 2274 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 54/389 (13%), Positives = 108/389 (27%), Gaps = 72/389 (18%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 E+ + + +E+ ++ FY ++ R+ +E+ IA+ + Sbjct: 564 LEETDSQIPEEVVVETIPEIPVTDFYFPE--DMTDFYPKTARDKVETNIAAI-----RLV 616 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RRFGSEV 170 ++ + A + LL K + G+ + S E L + + Sbjct: 617 KNLEVEHRNASSSEQELLAKYVG-WGGLANDFFDDYNPKFSKEREELKSLVTDKEYSDMK 675 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + T ++ + + DP+ GTG F H+ + Sbjct: 676 QSSLTAYYTAPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREK 727 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 +G EL+ T A+ + I+ T+ F Sbjct: 728 SE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV---AFNDN 765 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F +SN PF + R+ D + + K Sbjct: 766 SFDLVISNVPFA-------------NIRIADNRY--------DRPYMIHDYFIKKSLDLV 804 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYL 407 + GG+ AI+ G I + + E V LP F T++ T + Sbjct: 805 HDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDM 859 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRN 436 +E + + + Sbjct: 860 LFFQKHLNKEYVADDLAFSGSIRYEKDSR 888 >gi|329954690|ref|ZP_08295750.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT 12056] gi|328527231|gb|EGF54235.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT 12056] Length = 500 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 63/428 (14%), Positives = 114/428 (26%), Gaps = 88/428 (20%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + +G + T ++ L P + DP CGTG F+ A N Sbjct: 54 ASYKKGKGIYYTDMELSSRIIKFLEIPC----------GAYILDPCCGTGNFIVSARNSG 103 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL- 286 + +G +++ A+C R+ KNI TL+ + Sbjct: 104 HEN-----------VYGSDIDANAIALCQ------------RKSGIKNITVLDTLANNGK 140 Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 Y + NPP+ + K+ R K S GS LF+ Sbjct: 141 DILRELHLKSPVDYVIGNPPYV--------PINKDITIDTPDRLFLKSVKES-GSNLFIA 191 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + EL G + ++ + L + S++R+ +L I +I+ + F Sbjct: 192 AIYRAFELACPDG-VISYIIPKNFLH----VASYSKLRKLILSEKTILSIIDIGV-YFKS 245 Query: 401 TNIATYLWILSNRKTEERR-----------------------GKVQLINATDLWTSIRNE 437 + L N ++ L + + Sbjct: 246 VRGEQIIITLKNSHVPNHNIRIYGYGNNEFIKRLEVPQSFYDNEILLFENETDFRIYKRL 305 Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTG 494 + + D I YV R KF + D R F + V + FI + Sbjct: 306 ESSYKKLGD-----ICTGYVGRGKSKFPSAVTGKDIRKFSLKNAPVPQKGNRVFIQNIYS 360 Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQ--IYPYGWAESFVKESIKSNEAKTLKVKA 552 L + M + + L + Sbjct: 361 AEAGIIASLAGNLEASETVTVITDRDENMCRYILGILHSRLCNYFLLKFCYNNSKLTMHT 420 Query: 553 SKSFIVAF 560 ++ Sbjct: 421 DAKYLKKL 428 >gi|268322724|emb|CAX37459.1| Pseudogene of Type I restriction enzyme mprotein (C-terminal part) [Mycoplasma hominis ATCC 23114] Length = 125 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456 +FF T+I+T + +L K + I+A+ + N + I+D Y Sbjct: 1 MFFGTSISTCIMVLKKSK---IDNNILFIDASQEFLKATN----NNKLTSQNINNIIDYY 53 Query: 457 VSRENGKFSRMLDYRT 472 R++ + L Sbjct: 54 GQRKDISYISKLASVE 69 >gi|168700018|ref|ZP_02732295.1| Type I restriction-modification system methyltransferase subunit [Gemmata obscuriglobus UQM 2246] Length = 876 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 83/278 (29%), Gaps = 54/278 (19%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 +S +YE L + ++ TPR++ +L+ + + DP C Sbjct: 159 LSQVYEALCWEWTPREAKKTSQRYTPRNIAVTLLNEMLEGITNI------EACRILDPAC 212 Query: 215 GTGGFLTDAMN--HVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIR 262 G G FL + ++ + G ++ + + + Sbjct: 213 GAGVFLVLSFRRLYLERWRAAADKKRPDTAVIREILEKQLVGLDISEAALKLAALSLYLT 272 Query: 263 RLESDPRRDLSKNIQQ------------GSTLSKDLFT------------GKRFHYCLSN 298 +E DP ++ +S D +F +SN Sbjct: 273 AVELDPEPQPPDKLKFKNLRGRVLHNVREDGVSTDSQALGSLGAHVGKNFDGKFDIVVSN 332 Query: 299 PPFGKKWEKDKDAVEKEHKN-----GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+ + + +++ G+ LP ++ + FL+ + G Sbjct: 333 PPWTSLDKNMGKRLAGAYESIIKRVGDDNSVEVVLPD-NNPDLPFLLRSIEWCKP----G 387 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 GR + L + L + R + ++ I+ Sbjct: 388 GRIGMALPARLLLKSAKN--PAAARAMIFRLLRVDGII 423 >gi|260428543|ref|ZP_05782522.1| N-6 DNA Methylase family protein [Citreicella sp. SE45] gi|260423035|gb|EEX16286.1| N-6 DNA Methylase family protein [Citreicella sp. SE45] Length = 575 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 29/179 (16%) Query: 255 CVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 + M++ L D + ++ +I G ++ + L PPFG + D + Sbjct: 144 SQSSMMVHILTILDLQGMVTLDIDWGW--NRPGVSETDVEVML--PPFGVTGKDDHTIPQ 199 Query: 314 KEH-----KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + + G++GR I+D GR + + +F Sbjct: 200 RTLASLGLERGKIGRLLSETLAIADA--------------TEMTRGRVILSTTPGSMFR- 244 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLIN 426 E+ R LL +D +EAI+ +P+ +F T I T L LS T +R V+ ++ Sbjct: 245 -MVGSETVARENLLRSDRLEAIMGVPSGMMFTNTAIPTLLVTLSP--TAGKRNTVRFVD 300 >gi|256842520|ref|ZP_05548022.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298374900|ref|ZP_06984857.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|301308009|ref|ZP_07213963.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|256735876|gb|EEU49208.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267400|gb|EFI09056.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|300833479|gb|EFK64095.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 1000 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 48/214 (22%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP ++ +L P + D CG G F Sbjct: 60 EYAEAKKEFEMGQFFTPHEICRDMVDML----------CPVSSEMVLDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +P +G +++ + +V +I++ Sbjct: 107 ----------NHLPNPHNAYGFDIDGKAVSVAR------------YLYPEAHIEKCD--I 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + +RF + NPPF K+ K + E G+ L ++ Sbjct: 143 RQYYPEQRFDVIIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPAGI--------LMVIVPC 193 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + ++ R A + + F G+ G S Sbjct: 194 SFMQSGFWEKTRIAGI-NGRFSFVGQTKLGPSAF 226 >gi|16803622|ref|NP_465107.1| hypothetical protein lmo1582 [Listeria monocytogenes EGD-e] gi|224501478|ref|ZP_03669785.1| hypothetical protein LmonFR_03007 [Listeria monocytogenes FSL R2-561] gi|254828183|ref|ZP_05232870.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254898251|ref|ZP_05258175.1| hypothetical protein LmonJ_00510 [Listeria monocytogenes J0161] gi|254912256|ref|ZP_05262268.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936583|ref|ZP_05268280.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255027153|ref|ZP_05299139.1| hypothetical protein LmonocytFSL_13938 [Listeria monocytogenes FSL J2-003] gi|255029398|ref|ZP_05301349.1| hypothetical protein LmonL_10333 [Listeria monocytogenes LO28] gi|284801973|ref|YP_003413838.1| hypothetical protein LM5578_1728 [Listeria monocytogenes 08-5578] gi|284995115|ref|YP_003416883.1| hypothetical protein LM5923_1680 [Listeria monocytogenes 08-5923] gi|16411011|emb|CAC99660.1| lmo1582 [Listeria monocytogenes EGD-e] gi|258600570|gb|EEW13895.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609179|gb|EEW21787.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057535|gb|ADB68476.1| hypothetical protein LM5578_1728 [Listeria monocytogenes 08-5578] gi|284060582|gb|ADB71521.1| hypothetical protein LM5923_1680 [Listeria monocytogenes 08-5923] gi|293590233|gb|EFF98567.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 332 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 59/350 (16%), Positives = 114/350 (32%), Gaps = 55/350 (15%) Query: 88 LSTLGSTNT--RNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 L +T +N LE SY+ + + + +F+ L L K+ +++ IE Sbjct: 10 FQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIE 66 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 L + + + L++ G + MTP + + LL Sbjct: 67 LENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIQKK 117 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 ++ DP CGT LT +N + K + G +++ ++ + Sbjct: 118 KNISILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----LVGA 167 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + ++ L +D +S+ P G + D++A E E Sbjct: 168 DLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEG 218 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F LF+ + GG ++ + + +++ Sbjct: 219 HSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFI 261 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430 +N IE I+ LP LF + IL + +V L N + L Sbjct: 262 KKNGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311 >gi|254831983|ref|ZP_05236638.1| hypothetical protein Lmon1_11540 [Listeria monocytogenes 10403S] Length = 332 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 59/350 (16%), Positives = 114/350 (32%), Gaps = 55/350 (15%) Query: 88 LSTLGSTNT--RNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 L +T +N LE SY+ + + + +F+ L L K+ +++ IE Sbjct: 10 FQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIE 66 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 L + + + L++ G + MTP + + LL Sbjct: 67 LENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIQKK 117 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 ++ DP CGT LT +N + K + G +++ ++ + Sbjct: 118 KNISILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----LVGA 167 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + ++ L +D +S+ P G + D++A E E Sbjct: 168 DLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEG 218 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F LF+ + GG ++ + + +++ Sbjct: 219 HSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAIFGTSDFAKVD----KFI 261 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430 +N IE I+ LP LF + IL + +V L N + L Sbjct: 262 KKNGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311 >gi|315608513|ref|ZP_07883500.1| DNA methylase [Prevotella buccae ATCC 33574] gi|315249839|gb|EFU29841.1| DNA methylase [Prevotella buccae ATCC 33574] Length = 2077 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 54/391 (13%), Positives = 110/391 (28%), Gaps = 51/391 (13%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ IR DP+ G G F A G + + Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFARQAGIVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + +R + +L ++ SN PFG D Sbjct: 166 MHPYGKGNIFVRNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYSRGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ LF T + + L +L + + + Q I Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGLFSENAGTEVGSDLIVLQKQSGKIISEGIEQQFI 315 Query: 426 NA-TDLWTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 + + + K + D + + I I R G+ + + Sbjct: 316 ESVSAPIAEGSSVVFKHNSLFDGEWKDIAHRTIATERTMGRDPYGKPAWEYHFDGSIEDL 375 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ--------QIYPYGWAES 534 + L R + + + + + K + + P E+ Sbjct: 376 AESIRTQLSLEVEQRFDRKLYETGIPMTEEERQKEAEKQLQKLGITVDLPNEEPKTDKEA 435 Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 ++ + + K + + Sbjct: 436 DNAYNLMPDSIRKQLPKLYSTEKKLIGDKVA 466 >gi|159029754|emb|CAO87832.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 719 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 83/291 (28%), Gaps = 70/291 (24%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATA---------------------LLLDPDDA 197 YE + + S++ E + TP VV L + + Sbjct: 307 YETFLAEYDSKMRESRGVYYTPEPVVSYMVRSVDYILKNKFQIPKGLTDAKKLTIKNPND 366 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEP 249 + + DP GTG FL ++H+ D K + G EL Sbjct: 367 SQETQEVHQVLILDPAVGTGTFLHSVIDHIYDSFRQQKGMWSSYVSKHLLPRLFGFELLM 426 Query: 250 ETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTLSK-------DLFTGK---------- 290 + V + ++ L D D I +TL + D F + Sbjct: 427 APYTVAHMKLGLQLQELGYDFSADERLGIYLTNTLQEAFQIPPADGFLNRIRDEAESAQG 486 Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-------LGRFGPGLPKISDGSMLF 338 + NPP+ + +++ K + F + + + + Sbjct: 487 VKQEHPVMVIIGNPPYSGHSVNTGEWIKELLKGKDIISGEKTASYFEVDEQPLGEKNPKW 546 Query: 339 LMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 L K + G G A V + L N +R+ LL+ Sbjct: 547 LNDDYVKFIRFSQWRIEKTGYGILAFVTNHGYLDNPTFRG----MRQSLLK 593 >gi|308271231|emb|CBX27840.1| hypothetical protein N47_C18980 [uncultured Desulfobacterium sp.] Length = 252 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 85/279 (30%), Gaps = 45/279 (16%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I+ + F TP V L +L+ + T+ DP G G Sbjct: 7 IKDTPISHRKDYGQFFTPSSVARLMVQWVLNDN----------PTTVLDPAFGLG---IF 53 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + S + + + + + I + S Sbjct: 54 YDEVLKTKPSQQLQFIGYEIDKKIIGYLNSELNKSNLKINNCDYLEANAGS--------- 104 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F + NPP+ + K ++G+ G S+ S +FL+ Sbjct: 105 ---------FDGIICNPPYMRFQNFLKRHSVLPKIEKQIGKRLVGY---SNISSVFLLKA 152 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400 N+L N G A ++ G E++R LL+N L++ I+ ++F Sbjct: 153 LNEL----NDNGNLAFIMPFEFFNTGYG----KEVKRSLLKNHLLKQIIIFSNEKEIFPD 204 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 + + E+ K+ I A D + + N Sbjct: 205 ATTTVCVLLCKKDGKEDDI-KITQIKAEDEISQLSNISS 242 >gi|225869333|ref|YP_002745281.1| helicase [Streptococcus equi subsp. zooepidemicus] gi|225702609|emb|CAX00640.1| putative helicase [Streptococcus equi subsp. zooepidemicus] Length = 2281 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 76/302 (25%), Gaps = 60/302 (19%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T ++ + + DP+ GTG F Sbjct: 670 KEYSDMKQSSLTAYYTDPHLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 721 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 H+ + +G EL+ T A+ + +I+ Sbjct: 722 PKHLRENSE---------LYGVELDTITGAIAK------------HLHPNSHIEV-KGFE 759 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F LSN PF D D + + Sbjct: 760 TIAFNDNSFDLVLSNVPFANIRIADSHY---------------------DKPYMIHDYFV 798 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K + GG+ AI+ G I + + E V LP F Sbjct: 799 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQNIRETTDFLGGVRLPDSAFKAIAG 853 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T++ T + + + + + + ++D Q+L Y R Sbjct: 854 TSVTTDMLFFQKHMDKGYQADDLAFSGSIRYDKDDRIWLNP-YFDEDYNSQVLGTYEVRN 912 Query: 461 NG 462 Sbjct: 913 FN 914 >gi|296445757|ref|ZP_06887710.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gi|296256737|gb|EFH03811.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 608 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 47/313 (15%), Positives = 84/313 (26%), Gaps = 77/313 (24%) Query: 172 EGAEDFMTPRDVVHLATA----LLLDPDDALFKESPG---------------MIRTLYDP 212 + TP + + LD + ++ DP Sbjct: 15 KRQGIVYTPEPIARFLAERTIAVSLDEMSDALAAAHRGRETAAFWREWLAALRSFSIVDP 74 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G L A +A + +L+P A+ + ++ DP Sbjct: 75 GCGEGALLLAAAQEMARRYRDAAEHLRKLGVDVDLDPAREAIS---HNLFGVDIDPLAAA 131 Query: 273 -------------------SKNIQQGSTLSKD--------------LFTGKRFHYCLSNP 299 + I+ G +L D + F + NP Sbjct: 132 RARRALARLAPSPEAALRLEETIRAGDSLVDDPSASAGAFDWRAAFPQAARGFDIVIGNP 191 Query: 300 PF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 P+ ++ K + R+ + + F K GGR Sbjct: 192 PYVRMEYLKPLKPWLAQ-------RYHVAAERADLYAYFF-----EKGLSLLREGGRLGY 239 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKT 415 + SSS F AG + +R L + +E +V LP +F + L Sbjct: 240 I-SSSTFFRTGAG---ARLRGLLARSGAVECVVDFGDLP--VFDDVVAYPAIVTLRKGAA 293 Query: 416 EERRGKVQLINAT 428 + ++A Sbjct: 294 TQGDLSFLRLDAA 306 >gi|166364659|ref|YP_001656932.1| N-6 DNA methylase [Microcystis aeruginosa NIES-843] gi|166087032|dbj|BAG01740.1| N-6 DNA methylase [Microcystis aeruginosa NIES-843] Length = 429 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 45/264 (17%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + F TP V L + K++P T+ DP G G + Sbjct: 16 NHRKDYGQFFTPVCVARLMVQ-------WVLKDNP---ETVLDPAFGLG---VFYDEAIK 62 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + G E++ L R +S R ++ + + T Sbjct: 63 TPSGNQ-----VHFIGYEIDRNIF-----EFLNRNGDSPYLRVINSDYLEAET------- 105 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 ++F + NPP+ + + K ++G+ G S+ S LFL+ +L+ Sbjct: 106 -EKFDGIICNPPYMRFQKFLKRHDILPKIEEKIGKKLIGY---SNISSLFLVKSLRELK- 160 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATY 406 G A ++ G EI++ LLEN L++ I+ ++F Sbjct: 161 ---INGNLAYIMPFEFFNTGYG----KEIKKSLLENHLLKQIIIFDNEKEIFPEATTTVC 213 Query: 407 LWILSNRKTEERRGKVQLINATDL 430 + + N +E K+ I +D Sbjct: 214 VLLCKNDGKKETI-KILQIKKSDE 236 >gi|110803859|ref|YP_699839.1| hypothetical protein CPR_2592 [Clostridium perfringens SM101] gi|110684360|gb|ABG87730.1| N-6 DNA methylase [Clostridium perfringens SM101] Length = 494 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 55/287 (19%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP V ++D G +TL+DP CG + D Sbjct: 23 REIGYYSTPPFVARYIGKRIID--------INGKGKTLFDPCCG--------KEELTDYF 66 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 S I I ++ + I + Sbjct: 67 SDLGIKTIG----------------MDLIKYKNNYKCEFKKDNFINYYCSQKNTKTWD-- 108 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + Y ++NPP+ ++ KN GL + +F+ + +K + Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMFAIIDKAK---- 158 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409 G ++ + S F + +R +L I I P LF + T + I Sbjct: 159 NGALIGLITNDSF-FTAKNH---KRLRNKILRECSIYEITMCPRGLFHNQGADVRTSILI 214 Query: 410 LSNRKTEERRGKVQLIN---ATDLWTSIRNEGKKRRIINDDQRRQIL 453 L K E + K+ + N + + + + N K ++I+ Sbjct: 215 LRKGK--EYQEKIVVNNRPKSIEEFKGLLNGIKNNSNERPYSLQEIV 259 >gi|238022625|ref|ZP_04603051.1| hypothetical protein GCWU000324_02534 [Kingella oralis ATCC 51147] gi|237865828|gb|EEP66964.1| hypothetical protein GCWU000324_02534 [Kingella oralis ATCC 51147] Length = 939 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 87/302 (28%), Gaps = 64/302 (21%) Query: 68 DLESFVKVAG--YSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDFD---- 119 D AG + + S LGS +R L + I S N F Sbjct: 196 DDTLIFNEAGMVHRWLAASREDGDDLGSRISRLFETLSTPIPSRQKNLNEDLAQFGYVNG 255 Query: 120 --FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA--- 174 F+ IA E G L + S ++ + + ++++ ++ S Sbjct: 256 GLFAERIALPEFDGKLRHLLLACSAMDW--SEISPAIFGSMFQGILEENDPNSSRKKSRS 313 Query: 175 --EDFMTP-RDVVHLATALLLDPDDALFKESPG-----------MIRTLYDPTCGTGGFL 220 T ++++ L +D + K + +DP CG G FL Sbjct: 314 ELGAHYTSEKNILKAINTLFMDELRSSLKSATSRAAQFALHEKIAALHFFDPACGCGNFL 373 Query: 221 TDAMNHVADCGSH-------------------HKIPPILVPHGQELEPETHAVCVAGMLI 261 A + ++ I G E+E + + I Sbjct: 374 VIAYRELRRLEMDLIAKLYKTNLRDTLGAIATYQKVSINQFFGIEIEEHACEIAKTALYI 433 Query: 262 RRLESDPRR-------------DLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKW 305 + + +I + L+ D + HY + NPPF K Sbjct: 434 TDHQMNREAESRFGKARPTIPLHDIPHITCANALTTDWATVLPPQDCHYIIGNPPFVGKN 493 Query: 306 EK 307 ++ Sbjct: 494 KQ 495 >gi|187928678|ref|YP_001899165.1| hypothetical protein Rpic_1595 [Ralstonia pickettii 12J] gi|241114233|ref|YP_002973708.1| hypothetical protein Rpic12D_5237 [Ralstonia pickettii 12D] gi|187725568|gb|ACD26733.1| conserved hypothetical protein [Ralstonia pickettii 12J] gi|240868806|gb|ACS66464.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 310 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 17/130 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ + Y L ++ A F TP V + A+ ++ D + T+ +P Sbjct: 113 DVLGHTYMLL-----ELGNDRAGQFFTPYSVSSMMAAMQVNDHDP--DVAEHGFITVMEP 165 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG GG + + + H + +++P + + + + + Sbjct: 166 TCGAGGMVIAMAEAM--HQAGHNYQTAMHATCIDIDPRCVHMTYVQLALLHIPAV----- 218 Query: 273 SKNIQQGSTL 282 + G++L Sbjct: 219 ---VILGNSL 225 >gi|92109757|ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14] gi|91802839|gb|ABE65211.1| N-6 DNA methylase [Nitrobacter hamburgensis X14] Length = 1700 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 70/273 (25%), Gaps = 60/273 (21%) Query: 154 VMSNIYEHLIRRF--GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + E + S TP ++ + + + Sbjct: 144 EIGEDLEDAVGDLDHASLARCTQYAHFTPEFIIRAIWR--------GLQRLGWRGGRVLE 195 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P GTG F + G EL+P T + Sbjct: 196 PGIGTGLFPALMPEGLR---------KTSHVTGIELDPVTARIA------------GLLQ 234 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 I +G ++ F + NPPF + + A Sbjct: 235 PRARIIRGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSRGLRLHDY--------- 283 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 F+ + L+ G AA V S +G +S R + ++ + A + Sbjct: 284 ------FIARAIDLLKP----GALAAFVTS-----SGTMDKADSSAREHIAKSADLIAAI 328 Query: 392 ALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 LP F T++ L RK E G Sbjct: 329 RLPEGSFRASAGTDVVVDLLFFRKRKIAEPEGD 361 >gi|319644564|ref|ZP_07998917.1| N-6 DNA methylase [Bacteroides sp. 3_1_40A] gi|317384052|gb|EFV65038.1| N-6 DNA methylase [Bacteroides sp. 3_1_40A] Length = 678 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 51/245 (20%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP VV LL P+ DP+ GTG F++ + Sbjct: 16 NSVLTAFYTPEPVVTAMQEALLIPEI--------RPERFLDPSAGTGMFISTLKD----- 62 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + H E + T + + + NI+ ++ + Sbjct: 63 --------VPEIHCFEKDRLTGRILSS----------LYPESKVNIEGFQSIQP--YYNG 102 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F SN PFG + +++ + L + + + K Sbjct: 103 YFDVVSSNIPFG-----NTRIYDRDFDRSDDPVRKSSLAAVHN-------YFFFKGMDTL 150 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY--LW 408 GG A + +S + + + +R WL+ + + + + LP +LF L Sbjct: 151 REGGILAYITTSGVMDSPQNRP----VRDWLVNHANLVSTIRLPDNLFTDAGTEVGSDLI 206 Query: 409 ILSNR 413 +L Sbjct: 207 VLQKN 211 >gi|254384443|ref|ZP_04999784.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194343329|gb|EDX24295.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 1384 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 60/230 (26%), Gaps = 64/230 (27%) Query: 151 PDRVMSNIYEHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + IYE L+ + + TP +V + LDP Sbjct: 427 DAEELGVIYESLLELVPQYSATEQTFELVNRAGNERKKTGSYYTPSSLVEVLLDSTLDPV 486 Query: 196 DALFKESPGMIR-------------------TLYDPTCGTGGFLTDAMNHV-------AD 229 ++ T+ DP CG+G FL A + D Sbjct: 487 IDEAQKRGEAAAAEAGQIDAREAVERELLSLTVCDPACGSGHFLVAAARRIAKRVAAVRD 546 Query: 230 CGSHHKIPPILV---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQG 279 I +G +L P + + + LE L +I+ G Sbjct: 547 RTPEPTPESIRHALHDVIAKCVYGVDLNPMAVELAKVSLWMEALEPGKALGFLDAHIKHG 606 Query: 280 S-------TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + L + + F P + ++E+K G Sbjct: 607 NGLIGATPKLMRGGIPDEAFK------PVEGDDKSVATRWQRENKEQHQG 650 >gi|317181982|dbj|BAJ59766.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57] Length = 1033 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 79/578 (13%), Positives = 159/578 (27%), Gaps = 73/578 (12%) Query: 43 RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RL+ E + SNI + + + TS + +N Sbjct: 177 RLKDIFEKNPEIFHGFLDSLRGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 230 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 +++ I+ D L+ LY+ K + ++ N+Y Sbjct: 231 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 286 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218 + + SE TP +VV + T++DP GTG Sbjct: 287 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 346 Query: 219 FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 F+ ++ + S K + ++ + + + + D KNI Sbjct: 347 FIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQNRDGSLKNFKNI 406 Query: 277 QQGSTL----------SKDLFTG-------------KRFHYCLSNPPF--GKKWEKDKDA 311 +L DLF + + NPP+ G K E D + Sbjct: 407 ALTDSLDFYEEKNDKGVFDLFKDLEENKEIKSTIEKQNIRVIIGNPPYSAGSKSENDNNQ 466 Query: 312 VEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 K + G K+ + L+ G V++ + Sbjct: 467 NLSHPKLEKRVYEKYGKNSTAKVGATTRDTLIQSIYMASELLKDKGVLGFVVNGGFI--- 523 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTD--------------LFFRTNIATYLWILSNRK 414 + SG+ R+ + ++ ++ L + +F + AT I + Sbjct: 524 DSKSGDG-FRKCVAKDFAHLYVLNLRGNARTSGETFQKEGGKIFDSGSRATIAIIFFVKD 582 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 + G + + D + N D + + ++ R Sbjct: 583 ASVKNGAIHYYDIGDYLKREEKLNRLSNFTNLDAIP-----FETITPNAKGDWINQRDDA 637 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + ++ PL+ + + ++ P +F D L +Q+ A+ Sbjct: 638 FDKLI---PLKRDTKRQNPSVFDINSNGVVSGRDPWVYNFSPDALMLSVQKCIDTYNADL 694 Query: 535 FVKESIKSNEAK--TLKVKASKSFIVAFINAFGRKDPR 570 + K VK S + D Sbjct: 695 KRFNAHFREAFKQRAHGVK-SSELYKQLNDKEITTDKT 731 >gi|308271470|emb|CBX28078.1| hypothetical protein N47_G34020 [uncultured Desulfobacterium sp.] Length = 537 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 85/279 (30%), Gaps = 45/279 (16%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I+ + F TP V L +L+ + T+ DP G G Sbjct: 7 IKDTPISHRKDYGQFFTPSSVARLMVQWVLNDN----------PTTVLDPAFGLG---IF 53 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + S + + + + + I + S Sbjct: 54 YDEVLKTKPSQQLQFIGYEIDKKIIGYLNSELNKSNLKINNCDYLEANAGS--------- 104 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F + NPP+ + K ++G+ G S+ S +FL+ Sbjct: 105 ---------FDGIICNPPYMRFQNFLKRHSVLPKIEKQIGKRLVGY---SNISSVFLLKA 152 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400 N+L N G A ++ G E++R LL+N L++ I+ ++F Sbjct: 153 LNEL----NDNGNLAFIMPFEFFNTGYG----KEVKRSLLKNHLLKQIIIFSNEKEIFPD 204 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 + + E+ K+ I A D + + N Sbjct: 205 ATTTVCVLLCKKDGKEDDI-KITQIKAEDEISQLSNISS 242 >gi|332971857|gb|EGK10803.1| methylase [Kingella kingae ATCC 23330] Length = 923 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 74/273 (27%), Gaps = 59/273 (21%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNFSGIELH 146 TL + L Y+ F F+ T+ + + + K+ I Sbjct: 228 FQTLNTAKRSPKLPEYLQEF-----DYINGGLFAETLPTIYFDSEMRQKLIHIGREINWG 282 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGM 205 + + ++++ + T +D + L D A + + Sbjct: 283 --FISPEIFGSLFQEALD---VNERRELGAHYTEKDNIEKVINSLFLDDLKAELAQISSL 337 Query: 206 IR----------------TLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILV---- 241 R DP CGTG FL A + + ++ Sbjct: 338 KRDKKKRLIEFQQKIAKLKFLDPACGTGNFLVAAYRALRELEIQVIHEYQKLDKTHLQSA 397 Query: 242 -----PHGQELEPETHAVCVAGMLIRRLESDPRRDLS---------------KNIQQGST 281 G E++ + V M + + + +I G++ Sbjct: 398 VSIEQFFGIEIDGLAAEIAVLSMWLIDHLCNLHEGAALGKGYGSLNIPLRKLAHITHGNS 457 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 L D + + L NPPF + K+ Sbjct: 458 LRLDW---ENVDFILGNPPFIGSTYQTKEQKAD 487 >gi|328957178|ref|YP_004374564.1| putative nucleic acid methyltransferase [Carnobacterium sp. 17-4] gi|328673502|gb|AEB29548.1| putative nucleic acid methyltransferase [Carnobacterium sp. 17-4] Length = 335 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 45/337 (13%), Positives = 102/337 (30%), Gaps = 42/337 (12%) Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 SY+ + S+ + I + + L + K+ K + E+ D++ + + Sbjct: 26 ISYLEALSETGENILAN-RIPHQVDGLPSDETVGKLMKLY--KEVSIDSMEPEDIRKAIQ 82 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + + + MTP + + L+ L DP G G L Sbjct: 83 LALLKASKTDALQPNHQMTPDAIGFILNYLI-----EKLISGKEQAIRLLDPAVGMGNLL 137 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + N + + G + + + ++R + Sbjct: 138 STVYNGLVSKDILVEAE------GIDNDDLLLTLASVNTTLQRQNVTLTHQDA----LQD 187 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 L +S+ P G +K + K S LF+ Sbjct: 188 LLMDP------VDVVVSDLPVGYYPLDEKASKYKTAAKEGH----------SYAHHLFIE 231 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + L+ G + L + LF G + + + E ++ ++ LP +LF Sbjct: 232 QSLHYLKD-----GGFGLFLVPAQLFETDEAPG---LLKMIQEEAFLQGMLNLPNELFKT 283 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 N + ++ + + ++ K L+ + + + Sbjct: 284 KNSRKSILLIQKKGSNAKQAKQVLLAQIPDFKNQKAM 320 >gi|119493853|ref|ZP_01624419.1| DNA modification methyltransferase-related protein [Lyngbya sp. PCC 8106] gi|119452402|gb|EAW33592.1| DNA modification methyltransferase-related protein [Lyngbya sp. PCC 8106] Length = 920 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 74/279 (26%), Gaps = 63/279 (22%) Query: 148 DTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESP 203 D + + NI+E I E T + + + + Sbjct: 303 DNWSNIRPSIFGNIFESAID---PEKRHAHGIHFTSEVDIRQIVRPTISDYWEDRINAAN 359 Query: 204 GMI-----------RTLYDPTCGTGGFLTDAMNHVADCGS-----------------HHK 235 + + DP CG+G FL A + Sbjct: 360 TIGELNTLQMELQGYRVLDPACGSGNFLYVAYQELKRIERLLMDKITARKRSESTVAAIS 419 Query: 236 IPPILVPHGQELEPETHAVCVAGML-----------IRRLESDPRRDLSKNIQQGSTLSK 284 + G + P + M+ + + P L +NI L Sbjct: 420 FVTPMQFFGMDTNPFAVQLARVTMMIARKIAIDKYQLTNEPALPLDTLDQNIVCQDALFS 479 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + + + NPPF + + + E+ + +F + D S+ F + Sbjct: 480 RW---VKANAVIGNPPF-LGGKHMRMTLGDEYIDRVFNKFSD----VKD-SVDFCAYWFR 530 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 GRA +V G + + R+ LE Sbjct: 531 LAHDHIGETGRAGLV--------GTNSISQGKSRKAALE 561 >gi|319643753|ref|ZP_07998368.1| hypothetical protein HMPREF9011_03970 [Bacteroides sp. 3_1_40A] gi|317384641|gb|EFV65605.1| hypothetical protein HMPREF9011_03970 [Bacteroides sp. 3_1_40A] Length = 235 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ +++ + F TP V L + +++ D Sbjct: 68 DVLGDMFMECVSH------GNNGQFFTPIHVADLMACMGG--------NRLKPKQSVCDS 113 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L A+ A+ ++ +G +++ + V +++ + + Sbjct: 114 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 169 Query: 273 SKNIQQGSTLSKD 285 + +Q + D Sbjct: 170 TLTMQHWRSYHID 182 >gi|313667110|gb|ADR73003.1| RM.BspCNI [Bacillus sp. 1310(2010)] Length = 918 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 114/351 (32%), Gaps = 50/351 (14%) Query: 111 AKAIFEDFDFSSTIA-----RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 I E DF + R L K+ NF+ ++ D + E L+ Sbjct: 273 LNEISEKCDFYNIFEEKPGERYIDVATL-KVLTNFNDYIMNLDFNSYSD--RLLEELLNI 329 Query: 166 FGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + A F TP+++ + T+L + + DP CGTG + A Sbjct: 330 VVTRSKRKVAGQFSTPKELAMILTSLTMTDKSSRIS----------DPCCGTGTIVKAAY 379 Query: 225 NHVADCGSHHKIPPILVPHGQEL----EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + G + G + + A+ L +++ + N Sbjct: 380 DLKLVSGIDSSDAIDQIWAGDKFRYPLQFAMLALSSPENLGKQINIYKDDVFNLNASHKV 439 Query: 281 TLSKDLFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 L + F +SN PF ++ + N E RF L + +G Sbjct: 440 ELHSPISKETYEVDLGEFDTVVSNLPFVQQETLAE-------LNPEAIRFIEELNEAFNG 492 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN--GRAGSGESEIR---RWLLENDLIEA 389 ++A K++ G A +++S+S L G E + R +++L + Sbjct: 493 RSDLYAYIALKIDEILPEKGTAGLIVSNSWLGTEFGERFFDELKKRYHIKYILTSGK--- 549 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 F ++ T + +L KV I I EG+K Sbjct: 550 -----GRWFQNADVVTNIIVLEKG-NTSPDKKVNFITLKKTLQEIVVEGEK 594 >gi|294508850|ref|YP_003572909.1| Conserved hypothetical protein containing RNA methylase domain [Salinibacter ruber M8] gi|294345179|emb|CBH25957.1| Conserved hypothetical protein containing RNA methylase domain [Salinibacter ruber M8] Length = 369 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 21/146 (14%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 +S + PR + A L TL DP CG+G L +A + Sbjct: 181 EALSRRQLEGYQPRAALKANVAYALL----RLAHLDAPPNTLLDPFCGSGTILLEAAD-- 234 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL- 286 + +G + E + + + L I++G D Sbjct: 235 --------LWADTQCYGSDWNEEAVSGARTNVDLAGLSDRIA------IRKGDVWHLDET 280 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV 312 F ++NPPFG + D Sbjct: 281 FADVTADLIVTNPPFGVRMASSMDFY 306 >gi|189460986|ref|ZP_03009771.1| hypothetical protein BACCOP_01633 [Bacteroides coprocola DSM 17136] gi|198277732|ref|ZP_03210263.1| hypothetical protein BACPLE_03955 [Bacteroides plebeius DSM 17135] gi|265768072|ref|ZP_06095454.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|189432325|gb|EDV01310.1| hypothetical protein BACCOP_01633 [Bacteroides coprocola DSM 17136] gi|198269429|gb|EDY93699.1| hypothetical protein BACPLE_03955 [Bacteroides plebeius DSM 17135] gi|263252323|gb|EEZ23859.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 241 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ +++ + F TP V L + +++ D Sbjct: 74 DVLGDMFMECVSH------GNNGQFFTPIHVADLMACMGG--------NRLKPKQSVCDS 119 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L A+ A+ ++ +G +++ + V +++ + + Sbjct: 120 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 175 Query: 273 SKNIQQGSTLSKD 285 + +Q + D Sbjct: 176 TLTMQHWRSYHID 188 >gi|198274720|ref|ZP_03207252.1| hypothetical protein BACPLE_00879 [Bacteroides plebeius DSM 17135] gi|198272167|gb|EDY96436.1| hypothetical protein BACPLE_00879 [Bacteroides plebeius DSM 17135] Length = 1658 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 71/265 (26%), Gaps = 36/265 (13%) Query: 135 KICKNF-SGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 ++ + F + + + + + N+YE + E TP + V Sbjct: 842 EVLEKFYQSVRTNVGGIDNLEGKQTIIKNLYEKFFKGAFPLTVEKLGIVYTPVECVDFII 901 Query: 189 ALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 + D A F S + DP GTG F+T + + H E+ Sbjct: 902 RSVDDILKAEFNTSLTEQNVHILDPFTGTGTFITRLLQSGLIRPEDMERKYRNEIHCNEI 961 Query: 248 EPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGST--LSKDLFTG-------------- 289 + + + + + I T L++ Sbjct: 962 VLLAYYIADVNIESVFHDITHRETYLPYSGICLTDTFQLAEKKHNELFTEFFQDNSKRVK 1021 Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH---- 341 + NPP+ + D + R S ++ ++ Sbjct: 1022 KQMATHVRVIIGNPPYSIGQKSANDNAQNLSYPYLDKRVSETYAAKSSATLNKSLYDSYV 1081 Query: 342 ---LANKLELPPNGGGRAAIVLSSS 363 +P N GG A + + + Sbjct: 1082 KAFRWASDRIPQNEGGIVAFISNGA 1106 >gi|291544388|emb|CBL17497.1| DNA methylase [Ruminococcus sp. 18P13] Length = 1068 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 61/266 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S F TP V++ ++ K+ + +P+CG G F+ Sbjct: 345 EEYASARESTLTAFYTPPTVINAVYKVM--------KQLGFREGNILEPSCGIGHFIGML 396 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + +G EL+ + + + +I Sbjct: 397 PEEMKESK----------IYGVELDTISAGIAQ------------QLYQKSSIA-AQGFE 433 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG DK + + + F Sbjct: 434 ETNLPDSFFDAVVGNVPFGDFKVPDKRYDKHKFLIHDY----------------FFAKSL 477 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +KL GG ++ S + S +R+++ + + + LP + F Sbjct: 478 DKLRP----GGVMVLITSKGTMDKEN-----SAVRKYIAQRADLLGAIRLPNNTFKGNAG 528 Query: 401 TNIATYLWILSNRKT--EERRGKVQL 424 T + + + IL R + VQL Sbjct: 529 TEVVSDILILQKRDRIVDIEPDWVQL 554 >gi|302554850|ref|ZP_07307192.1| type II restriction enzyme [Streptomyces viridochromogenes DSM 40736] gi|302472468|gb|EFL35561.1| type II restriction enzyme [Streptomyces viridochromogenes DSM 40736] Length = 1383 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 45/324 (13%), Positives = 82/324 (25%), Gaps = 74/324 (22%) Query: 154 VMSNIYEHLIR---------RFGS------EVSEGAEDFMTPRDVVHLATALLLDP-DDA 197 + ++YE L+ R + + TP + L+P D Sbjct: 418 ELGSVYEALLELVPKHSVADRTFELVDRIGNDRKKTGSYYTPSALTETLLDSTLNPVIDD 477 Query: 198 LFKESPGMIR------------------TLYDPTCGTGGFLTDAMNHV-------ADCGS 232 + T+ DP CG+G FL A + + Sbjct: 478 AVRRGEQRANAEGRLSPTDTIVEELLSLTVCDPACGSGHFLVAAARRIAKRVAAVRERNP 537 Query: 233 HHKIPPILV---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282 + +G +L P + + + +E P L +I+ G+ L Sbjct: 538 EPTAEAVRHALHEVVARCVYGVDLNPMAVELAKVSLWLEAMEPGKPLSFLDAHIKHGNGL 597 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR---FGPGLPKISDGSMLFL 339 P + +K E + R + G + Sbjct: 598 ------------IGVTPALMRDGIPEKAFKTTEGDDDAWARQLLNRNTEERKGQGVLFEA 645 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 N R + L E+ R W +D + A + L Sbjct: 646 QTETNVANTSFARSLRHITASPADNL--TEVRRKEAAYRDWSTSDDYLHA-LHLAD---- 698 Query: 400 RTNIATYLWILSNRKTEERRGKVQ 423 A ++W+ + KV Sbjct: 699 -AWCAAFVWVKRKESSPAITHKVF 721 >gi|241888969|ref|ZP_04776273.1| N-6 DNA methylase [Gemella haemolysans ATCC 10379] gi|241864218|gb|EER68596.1| N-6 DNA methylase [Gemella haemolysans ATCC 10379] Length = 1018 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 97/328 (29%), Gaps = 94/328 (28%) Query: 82 NTSEYSLSTLGSTNTRN-NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 N +++ L T+ N N + I F+ F + + L +++ Sbjct: 288 NVTKHELFTMLCRNIDKGNKQKGINKFNGGL------FKYDEILDDLVLDDIIFTELITL 341 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED--------------FMTPRDVVHL 186 + + + D + + I+E I ++ F TP + Sbjct: 342 ADYDFNTDVDENI-LGRIFEQSISDLEELKNDALGIETDKKKGKRKKDGVFYTPSRITRG 400 Query: 187 ATALLLDPDDALFKESPGMIR------------------------------------TLY 210 + K G + + Sbjct: 401 IVEKSIGEYLNDKKLELGFEKLPELTDESIETQRGLSAKAEKHLTFWREYRSKVLNIKVI 460 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIP--------------------------PILVPHG 244 DP CG+G FL A +++ I +G Sbjct: 461 DPACGSGAFLIAAYDYLKKELDEINDRIADLKGRTQELFDGDEMYDASLENEYLIKCLYG 520 Query: 245 QELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKDLFTGKR--------FHYC 295 +L PE+ + + +R L +D P +L NI+ G+++++ F + F Sbjct: 521 VDLNPESVEISKLSLWLRTLTNDKPLTNLDDNIKSGNSITEFDFQEEFLEVFVKGGFDVV 580 Query: 296 LSNPPFGKKWE-KDKDAVEKEHKNGELG 322 + NPP+ K+ KD V +E +G Sbjct: 581 IGNPPYVKQERLKDVKHVLEEKYLTFMG 608 >gi|288801294|ref|ZP_06406748.1| adenine specific DNA methyltransferase [Prevotella sp. oral taxon 299 str. F0039] gi|288331677|gb|EFC70161.1| adenine specific DNA methyltransferase [Prevotella sp. oral taxon 299 str. F0039] Length = 537 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 31/211 (14%) Query: 103 YIASFS-DNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 YI+ S + K + + + + K+ Y++ + I D YE Sbjct: 45 YISKQSLEFVKDNLIGNSKLIARSNKSRKSTKSYEL-SKPTAITDLNSDCFDEESGQRYE 103 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + + + T ++++ + T DP CG G F+ Sbjct: 104 NSL---TESYRNKEGIYYTNKNIIADMLKHI----------KVTKQTTFLDPCCGCGNFI 150 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +A+ K + +G + + + + ++ NI Sbjct: 151 MEAIE---------KGVEVENIYGFDTDAIAVEITKQRVFLK------TGKQPINIICAD 195 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 L+ K+F +NPP+GKK K+ Sbjct: 196 FLTTAKSLNKKFDLIYTNPPWGKKLSKNHKE 226 >gi|154253048|ref|YP_001413872.1| methylase [Parvibaculum lavamentivorans DS-1] gi|154156998|gb|ABS64215.1| methylase [Parvibaculum lavamentivorans DS-1] Length = 928 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 55/228 (24%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + + +++ ++ + +E + T ++++ L L LD F + + R Sbjct: 284 EAISPAIFGALFQSVMNK--TERRALGAHYTTEKNILKLIQPLFLDGLHEEFARAKALKR 341 Query: 208 ----------------TLYDPTCGTGGFLTDAMNHVADCGSHH----------------- 234 T +DP CG G FL A + Sbjct: 342 GRQQALEALHEKLGQLTFFDPACGCGNFLVIAYRELRALEQEILRVLHDGKDQRIFDVAQ 401 Query: 235 -KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKN-----------IQQGS 280 + +G E+ + M+ + + N I Sbjct: 402 LSKVNVDQFYGIEIGEFPARIAEVAMWMMDHIMNNRLGLSFGSNYARIPLRTSPHILHAD 461 Query: 281 TLSKDL---FTGKRFHYCLSNPPFGKK---WEKDKDAVEKEHKNGELG 322 L D ++ Y NPPF + + V K G G Sbjct: 462 ALEADWAALLPPEKCSYVFGNPPFIGSKFQTAEQRRQVRDIAKLGGSG 509 >gi|257093734|ref|YP_003167375.1| putative type II DNA modification enzyme [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046258|gb|ACV35446.1| putative type II DNA modification enzyme [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1158 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 50/185 (27%) Query: 149 TVPDRVMSNIYEHLI------------RRF------GSEVS--------EGAEDFMTPRD 182 + + ++YE L+ RRF + + + + TP Sbjct: 416 DMDSEELGSVYESLLELVPELTLTASVRRFGFIGDAAEQAGGSTKGNARKLSGSYYTPDS 475 Query: 183 VVHLATALLLDP-DDALFKESPGMIR------TLYDPTCGTGGFLTDAMNHVAD------ 229 +V LDP +P ++ DP CG+G FL A +A+ Sbjct: 476 LVQELIRSALDPVIAQTLAANPRQPVQALLELSVCDPACGSGHFLLAAARRLAEEVARLS 535 Query: 230 ----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQ 278 + +G + P + + + D P L +++ Sbjct: 536 ATEGNPLPADYRHALRDVVAHCIYGVDKNPLAIELARTALWLEAYTPDRPLTFLDHHLRC 595 Query: 279 GSTLS 283 G L Sbjct: 596 GDALL 600 >gi|157155468|ref|YP_001464366.1| hypothetical protein EcE24377A_3365 [Escherichia coli E24377A] gi|157077498|gb|ABV17206.1| conserved hypothetical protein [Escherichia coli E24377A] Length = 230 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L F TP V + + L ALF+ P + TL +P Sbjct: 87 DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFENKPFI--TLSEP 139 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G + + + G + +++P + + + + + Sbjct: 140 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 197 Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294 S ++ L + Y Sbjct: 198 SLCNERRRVLLTPGHYLGNWSY 219 >gi|261884258|ref|ZP_06008297.1| type I restriction-modification system, M subunit [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 39 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + ++ ++YE+LI F S + +F TP +V L Sbjct: 4 NNDIIGDVYEYLIAHFASNAGKKGGEFYTPSEVSTL 39 >gi|217033703|ref|ZP_03439130.1| hypothetical protein HP9810_5g45 [Helicobacter pylori 98-10] gi|216943892|gb|EEC23329.1| hypothetical protein HP9810_5g45 [Helicobacter pylori 98-10] Length = 1296 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 49/364 (13%), Positives = 98/364 (26%), Gaps = 44/364 (12%) Query: 43 RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RL+ E + NI + + + TS + +N Sbjct: 755 RLKDIFEKNPEFFHGFLDSLKGNIHQNIKEDEALDM------ITSHIITKPIFDAIFGDN 808 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 +++ I+ D L+ LY+ K + ++ N+Y Sbjct: 809 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 864 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218 + + SE TP +VV + T++DP GTG Sbjct: 865 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 924 Query: 219 FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 F+ ++ + S K + ++ + + + + D KNI Sbjct: 925 FIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQSRDGSLKNFKNI 984 Query: 277 QQGSTL----------SKDLFTG-------------KRFHYCLSNPPFGKKWEKDKDAVE 313 +L + DLF + + NPP+ + + D + Sbjct: 985 ALTDSLDIYEEKNDKGAFDLFKDLEENKEIKSTIEKQNIRVIIGNPPYSAGAKSENDNNQ 1044 Query: 314 KEHKNGELGRFGPGLPKISDGSMLF-----LMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + K S + L+ G V++ + + Sbjct: 1045 NLSHKKLEKKVYEKYGKNSTAQVGATTRDTLIQSIYMASDLLKDRGVLGFVVNGGFIDSK 1104 Query: 369 RAGS 372 A Sbjct: 1105 SADG 1108 >gi|330937284|gb|EGH41297.1| Type I restriction enzyme (modification subunit) [Pseudomonas syringae pv. pisi str. 1704B] Length = 346 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 15/121 (12%) Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 +++ RF + G + + H+ + E GR +++ S LF Sbjct: 216 KYKKEDLDRDSYQRFDHA---SAKGPLAAVFHILAQTE------GRVILLVPDSLLFKPG 266 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 A E +R +LL +EA+V+LPT A + IL+ E +V + T+ Sbjct: 267 A---ERSLREYLLTRQRVEAVVSLPTGAAQGLKGACSILILNTVLASE---QVLFVKVTN 320 Query: 430 L 430 Sbjct: 321 E 321 >gi|306815671|ref|ZP_07449820.1| hypothetical protein ECNC101_03683 [Escherichia coli NC101] gi|305851333|gb|EFM51788.1| hypothetical protein ECNC101_03683 [Escherichia coli NC101] Length = 228 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 9/142 (6%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L F TP V + + L ALF++ P + TL +P Sbjct: 85 DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFEDKPFI--TLSEP 137 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G + + + G + +++P + + + + + Sbjct: 138 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 195 Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294 S ++ L + Y Sbjct: 196 SLCNERRRVLLTPGHYLGNWSY 217 >gi|319901638|ref|YP_004161366.1| hypothetical protein Bache_1796 [Bacteroides helcogenes P 36-108] gi|319416669|gb|ADV43780.1| hypothetical protein Bache_1796 [Bacteroides helcogenes P 36-108] Length = 589 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 91/299 (30%), Gaps = 35/299 (11%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E LL + P T+ D M +++E +I TP+ V Sbjct: 52 EDFDLLQEFVSKIHHFHPAPMTIED--MISLFEFVI---SPADRIVTGAVYTPKYVRENI 106 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQE 246 L + D CG GGFL D + + +G + Sbjct: 107 IETCL----NTIPNEHIQHIRVADIACGCGGFLMDVALFLHNNTGRAFYDIYQKSVYGID 162 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPF- 301 ++ + + + L D N+ Q +TL + K F + NPP+ Sbjct: 163 IQEYSVERTKILLSLLALLHGEDLDFDFNVLQANTLDFNTAEWNQDYKHFDVIVGNPPYV 222 Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 + ++ E +P F L N GGR Sbjct: 223 CSRNVDATTKEKMLQYEVCLSGHP--DLYIP--------FFQIATEML----NDGGRLGF 268 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 + +S + + + + R + + +++ +F + + T L+ L+ + + Sbjct: 269 ITMNSFIRSVNGRAVRNYFSRGIHDISILD---FRGYQVFQKKSTYTCLFFLTKNQASD 324 >gi|212693469|ref|ZP_03301597.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855] gi|212663982|gb|EEB24556.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855] Length = 1000 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 38/142 (26%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP +V +L SP + D CG G F Sbjct: 60 EYAEAKKEFEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +P +G +++ + AV +I++ Sbjct: 107 ----------NHLPNRHNVYGFDIDGKAVAVAK------------YLYPDAHIEKCDIRQ 144 Query: 284 KDLFTGKRFHYCLSNPPFGKKW 305 D +RF + NPPF K+ Sbjct: 145 YD--PEQRFDIIIGNPPFNLKF 164 >gi|213692204|ref|YP_002322790.1| putative DNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523665|gb|ACJ52412.1| putative DNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458332|dbj|BAJ68953.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 932 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 75/291 (25%), Gaps = 77/291 (26%) Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + D L A + G + + + ++ E + + Sbjct: 274 DRIDVPPLTGELRDA-----LLDISEGFDW--SGISPVIFGSLMEETLSH---DERRKGG 323 Query: 176 DFMTP-RDVVHLATALLLDPDDALFKESPGM-------------------IRTLYDPTCG 215 T R++ L L LD + +++ DP CG Sbjct: 324 MHYTSVRNIHRLIDPLFLDGLKSELEQAEAKPVAGGARTNALNKLHDKIAGLRFLDPACG 383 Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL--------------------VPHGQELEPETHAVC 255 +G FLT+ + + HG E+ AV Sbjct: 384 SGNFLTETYLELRRIENRILADLDKDGQLALDLGDDLNPVRVSISHFHGIEINGFACAVA 443 Query: 256 VAGMLIRRLESDPRRDL------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPP 300 + I ++ + + +IQQG+ L D G Y + NPP Sbjct: 444 RTALWIAEQQALDDTESTISGLPRLPFTDTAHIQQGNALRLDWNELLPGDHCDYVMGNPP 503 Query: 301 FG---KKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFL 339 F K D ++ G R D + F+ Sbjct: 504 FIGHVTKTAGQTDDLKTVWGRQYDGYLDYATGWYRKAASYLSKPDAAFAFV 554 >gi|254520789|ref|ZP_05132845.1| N-6 DNA methylase [Clostridium sp. 7_2_43FAA] gi|226914538|gb|EEH99739.1| N-6 DNA methylase [Clostridium sp. 7_2_43FAA] Length = 492 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 76/257 (29%), Gaps = 51/257 (19%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E +I + + TP + T +++ +++ DP CG Sbjct: 10 EKIINDLSID-KRQIGYYSTPSFICDYITMKVME--------VNNNGKSVLDPCCGREEM 60 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L ET+ + ++ + E + + I+ Sbjct: 61 LNPFNKF---------------------NIETYGI---DIIKYKEEYNCNFKNTDFIKYY 96 Query: 280 STL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + + + Y + NPP+ + +KE K G+ + L Sbjct: 97 YEFVSANNQIKNLNYDYYVLNPPYNCHEVQYIRDNKKELKKHFN---DVGV---HNMYGL 150 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ + G I+ S L + +R+ +L I I PTDL Sbjct: 151 FISAVI----DLAKDGAVIGIITHDSFLTSKSYQG----LRKKILNTCSIHEITMCPTDL 202 Query: 398 FFRTNIA--TYLWILSN 412 FF T + IL Sbjct: 203 FFEQGAEVRTSIVILQK 219 >gi|167764559|ref|ZP_02436680.1| hypothetical protein BACSTE_02949 [Bacteroides stercoris ATCC 43183] gi|301312135|ref|ZP_07218054.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3] gi|167697228|gb|EDS13807.1| hypothetical protein BACSTE_02949 [Bacteroides stercoris ATCC 43183] gi|300829810|gb|EFK60461.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3] Length = 246 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L R G + F TP + L + + + DP Sbjct: 85 DALGDLFMALSSRKGQQA---QGQFFTPVHICDLMVMC-------TETDGKKTGQRINDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + + MLI + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTICNMLIHGCVGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF 292 + +L + F Sbjct: 180 ---VIHHDSLCPENFMDGWM 196 >gi|313837684|gb|EFS75398.1| hypothetical protein HMPREF9621_00242 [Propionibacterium acnes HL037PA2] gi|314972623|gb|EFT16720.1| hypothetical protein HMPREF9622_00264 [Propionibacterium acnes HL037PA3] Length = 61 Score = 49.2 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 337 LFLMHLANKLELPPN---GGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 +F H+ + G R +VLS SPLF+G+A G+ +IRRW+ Sbjct: 1 MFFQHMLGHMSPVTEVSPQGSRVGVVLSGSPLFSGQASFGKRKIRRWM 48 >gi|72161128|ref|YP_288785.1| type II DNA modification enzyme [Thermobifida fusca YX] gi|71914860|gb|AAZ54762.1| putative type II DNA modification enzyme [Thermobifida fusca YX] Length = 1321 Score = 49.2 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 36/171 (21%) Query: 148 DTVPDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLL 192 + + +YE L+ R + + TP +V L Sbjct: 441 QHLDAEELGLVYESLLNLVPYTDPAVRVFELRSAAGNDRKTTGSYYTPSSLVETLLDSTL 500 Query: 193 DPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVA----------------DCGS 232 DP + T+ DP CG+G FL A +A Sbjct: 501 DPVIEEHAKRGVPDDLLKITVCDPACGSGHFLVAAARRIARAYAVLEAGDEEPTPDAISR 560 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282 +G +L P + + + +E P L +I+ G+ L Sbjct: 561 AMPKVVRHCIYGVDLNPLAVELTKVSLWLASVEPGKPLAFLDDHIKVGNAL 611 >gi|120435726|ref|YP_861412.1| type I restriction-modification system methyltransferase subunit [Gramella forsetii KT0803] gi|117577876|emb|CAL66345.1| type I restriction-modification system methyltransferase subunit [Gramella forsetii KT0803] Length = 991 Score = 49.2 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 25/304 (8%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYS---FYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 E+ G++ + + + G S S L + +++L + + Sbjct: 203 KYLEERKDSDGNSSFNQKYFRKYGNCKEFVDVLSRGSFVALL-DDLQHDLNGNLFDWKPQ 261 Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRR--- 165 K + D S + L+ + +P ++S IYE + Sbjct: 262 EKELIPSLDLSGLVEALKAYKTPEDSHNEILELIRYYEFSYIPVELISRIYEEFLAGGDD 321 Query: 166 --FGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 F + + F TP + L ++ FK+ + DP CG+G FL Sbjct: 322 ALFSQKEKKQKDGIFYTPSHLAQLLVDEIMP--LHQFKDIDIKGFKILDPACGSGIFLVL 379 Query: 223 AMNHV---ADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDL 272 A + + K P I +G + E E + + + + + + Sbjct: 380 AFKRLVQWWRLQNDLKKPDIQTLKDILDCIYGIDKEFEATKLAAFSLCLALCDELSPKQI 439 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 ++ + F L + P G K + + K+ K + R G P Sbjct: 440 INELKFSDLTDNQILHSDFFIEHLLSLPGGDNDLKKQQSNFKKLKGIKFSR-IIGNPPFD 498 Query: 333 DGSM 336 G++ Sbjct: 499 RGAL 502 >gi|266619952|ref|ZP_06112887.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479] gi|288868416|gb|EFD00715.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479] Length = 1013 Score = 49.2 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 70/459 (15%), Positives = 126/459 (27%), Gaps = 117/459 (25%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F TP + L + L P + D TCG G F N + Sbjct: 73 ENGQFFTPPPICDLVVSCL----------KPSASDLIADLTCGMGNFF----NFL----- 113 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 P +G E++ + + V NI+ G + + RF Sbjct: 114 ----PAESNAYGCEIDHKAYKVA------------HYLYPKANIELGD--IRTYESDIRF 155 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + + NPPF KW + + ML ++ K Sbjct: 156 DFVIGNPPFHLKWYLEDGS-----------------------EMLSQIYYCVKAAELLKP 192 Query: 353 GGRAAIVLSSSPL---FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATY 406 G A+++ S L F E R L VALP + F T Sbjct: 193 FGIMALIVPQSFLADTFTDGRLIQAMENRYSFLGQ------VALPDNAFLSMGAGRFPTK 246 Query: 407 L-----------WI---------------LSNRKTEERRGKVQLINATDLWTSIRNEG-- 438 L W+ + +R L A ++ Sbjct: 247 LQFWQRRSGLEGWVPLPYTTKPGLSLTAGFHIQSEAKRIYDCFLEKARSDLEVHKSHILL 306 Query: 439 --KKRRIINDDQRRQILD-IYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSF-ILDKT 493 K R + + + +I +Y + + + SR + YR +P M++ + Sbjct: 307 ELAKSRDTSAEFQYKIKKLLYHIKIHPETKSRYTKCCEYLYRFCTERKPDEMTYEEWCRV 366 Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + + RK + +++Q Y + + K + + ++ Sbjct: 367 RITEKKVLSYLRKTLKRQNLPPERDVIALVKQNYHFAYKGYSAKIRRQMD----YDLRVK 422 Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592 A + + P + +YEN Sbjct: 423 TPIYQAVLENSPERYPGYARLLRGK--------RRDYEN 453 >gi|256544790|ref|ZP_05472162.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC 51170] gi|256399679|gb|EEU13284.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC 51170] Length = 3649 Score = 49.2 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 59/399 (14%), Positives = 121/399 (30%), Gaps = 72/399 (18%) Query: 31 FGKVILPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82 + + LPF+ L+ ++ L R +K L + + ++ + Sbjct: 1773 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNNLIRNDRENIEG 1832 Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 SE SL N NL ++ A + + + + AR ++ +L K Sbjct: 1833 VSEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGG 1892 Query: 142 GIELHPDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 ++ + + + E+L + F TP+ V+ Sbjct: 1893 LSDVFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE-------- 1944 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 + +P+ GTG F+ + + + +G EL+ + + Sbjct: 1945 SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK- 1993 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + NI Q + F+ F + N PFG + ++E++ Sbjct: 1994 -----------ELYPNSNI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKIADREYE 2036 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L + K GG A + +G ++ Sbjct: 2037 RN---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDV 2076 Query: 378 RRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 RR++ E + LP F T + + + L R Sbjct: 2077 RRYISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKKR 2115 >gi|189466897|ref|ZP_03015682.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM 17393] gi|189435161|gb|EDV04146.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM 17393] Length = 1000 Score = 49.2 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 38/142 (26%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP +V +L SP + D CG G F Sbjct: 60 EYAEAKKEFEMGQFFTPHEVCRDMVDVL----------SPTSSEMILDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +P +G +++ + AV +I++ Sbjct: 107 ----------NHLPNQHNAYGFDIDSKAVAVAR------------YLYPDAHIEKCD--I 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKW 305 + + +RF + NPPF K+ Sbjct: 143 QQYHSEQRFDAIIGNPPFNLKF 164 >gi|298377202|ref|ZP_06987156.1| type I restriction enzyme, M subunit [Bacteroides sp. 3_1_19] gi|298266186|gb|EFI07845.1| type I restriction enzyme, M subunit [Bacteroides sp. 3_1_19] Length = 255 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 31/160 (19%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + A + + DP Sbjct: 85 DAFGDLFMAISSKIGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + V ML+ + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTVCNMLVHGCIGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF---HYCLSNPPFGKKWEKDK 309 + +L + F + P ++ K++ Sbjct: 180 ---VIHHDSLFPENFMDGWMVNHTLTQTGIPTIRRMSKEE 216 >gi|315282518|ref|ZP_07870911.1| adenine-specific methyltransferase [Listeria marthii FSL S4-120] gi|313613835|gb|EFR87586.1| adenine-specific methyltransferase [Listeria marthii FSL S4-120] Length = 335 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 96/300 (32%), Gaps = 49/300 (16%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 K+ +++ IEL + + + L++ G + MTP + + LL Sbjct: 60 KLQESYDSIELENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL--- 113 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 ++ DP CGT LT +N + K + G +++ ++ Sbjct: 114 ---EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELKGNVEVHASGVDVDDLLISL 165 Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDA 311 + + ++ L +D +S+ P G + D++A Sbjct: 166 A-----LVGADLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENA 211 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 E E F LF+ + GG ++ + Sbjct: 212 KTFELCREEGHSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFA 258 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430 + +++ +N IE I+ LP LF + IL + +V L N + L Sbjct: 259 KVD----KFIKKNGHIEGIIKLPETLFKTEQARKSILILQKADVNVKPPKEVLLANLSSL 314 >gi|89885781|ref|YP_515979.1| helicase-like [Rhodoferax ferrireducens T118] gi|89347779|gb|ABD71981.1| helicase-like [Rhodoferax ferrireducens T118] Length = 1726 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 58/500 (11%), Positives = 125/500 (25%), Gaps = 104/500 (20%) Query: 91 LGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIARLEKAGLLYKI-----CKN-FSG 142 L + + +L + F N + + + T L + L + K+ F Sbjct: 93 LLAKDVHEDLRGQVTKFDANVEAIELLRVLEAEMTPPTLAQRQTLNRYTGWGGIKHPFDS 152 Query: 143 IELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 +R + L+ F S TP V+ + + Sbjct: 153 PYHLAQEWVNRAK--QLKSLLSEDEFESAKESTLNAHFTPIPVIDQLWTI--------LR 202 Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHA 253 + + +P G G L + +A + V +G Sbjct: 203 QIGFTGGRIIEPAGGIGFMLGAMPSDIAQRSSVTAVEIDDLSARFLKVLYGSHANVLHMG 262 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 + + F + N PFG D Sbjct: 263 FEKTNL----------------------------PEQYFDLVIGNVPFGNYSVGDLR--- 291 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 + + + + GG A++ S+ + N Sbjct: 292 ----------------RKTYSDWAIHNYFVGRSLDLVRPGGLVAVITSAYFMDNSN---- 331 Query: 374 ESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430 ++R + + + LP F T++ L IL R + E + Sbjct: 332 -DKVRDVIARKAKLLGAIRLPAGTFSEIANTDVVADLVILQKRSSTETLTR--------- 381 Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT--FGYRR---------IK 479 N + ++++D + + Y +N S + G I Sbjct: 382 -EERENWVETTLLLDEDGTKMRVGNYTQGQNV-NSYWMKNPQAVVGVWTEISRNQGQSIV 439 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539 P +++ +++ + + + L + + E Sbjct: 440 PKLPKGADLMVEMERASKVIPQGVYAPATQQVKEVLLAVADGSNAVLPGSYVIEGGDIYR 499 Query: 540 IKSNEAKTLKVKASKSFIVA 559 + + VK K+ +A Sbjct: 500 FNGHSLEKTGVKGKKAERIA 519 >gi|271968783|ref|YP_003342979.1| hypothetical protein Sros_7557 [Streptosporangium roseum DSM 43021] gi|270511958|gb|ACZ90236.1| hypothetical protein Sros_7557 [Streptosporangium roseum DSM 43021] Length = 709 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + ++ G A ++ + L + G+ E+++R LL + ++EA+V LP + Sbjct: 317 LEGVERISDLLGPGCTALVLGPADALVDALPGTEEAQLRSGLLRSGVVEAVVNLPGGVTP 376 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDL 430 +R LW+L+ + RG V L + +D Sbjct: 377 YRPGYRCALWVLTRDPVDAARGYVLLADISDE 408 >gi|187940164|gb|ACD39294.1| hypothetical protein PACL_0506 [Pseudomonas aeruginosa] Length = 1490 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 28/145 (19%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-------TLYDPTCGTGGF 219 + + TP +V L+P + + DP CG+G F Sbjct: 472 AGNARKLTGSYYTPDSLVQALIKSALEPVIEQRLAANPANPTAALLAIRVIDPACGSGHF 531 Query: 220 LTDAMNHV--------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 L A + D + +G + P + + Sbjct: 532 LLAAARRLAEKLAQLRSLEGGQEGAIQPQDYRHALREVVTHCIYGVDRNPMAIELARMAL 591 Query: 260 LIRRL-ESDPRRDLSKNIQQGSTLS 283 + E P L ++Q G L Sbjct: 592 WLEGFEEGRPLGFLDHHLQVGDALL 616 >gi|116329163|ref|YP_798883.1| methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121907|gb|ABJ79950.1| Methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 545 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 33/256 (12%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 ++ F TP V +L G+ R + DP G G F ++ + Sbjct: 8 KNKNKFLGQFFTPERVAGFLVDWILG--AERITSQEGLKR-ILDPAIGNGIFFESVLDKL 64 Query: 228 ADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + + A ++ + D Sbjct: 65 PNLDAEWVGFDLDAQCLSASRSALENRISKAS-ILSFYDRDFLL---------------Q 108 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 ++F L NPP+ + +E G+ LP ++ + FL+ N Sbjct: 109 KENQKFDAILCNPPYR---KISDKNYSRELIQQFEGKSERKLPGTANLYVFFLLKCLN-- 163 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIA 404 N GGRAA ++ +G +S L E+ L+ ++ LF + Sbjct: 164 --LINVGGRAAFLVPQDFFNSGYGVFIKSA----LQESGLLHSLFLFSPQDSLFDEAITS 217 Query: 405 TYLWILSNRKTEERRG 420 + + +L N + E++ G Sbjct: 218 SCILLLENSEKEKKSG 233 >gi|220930539|ref|YP_002507448.1| helicase [Clostridium cellulolyticum H10] gi|220000867|gb|ACL77468.1| helicase domain protein [Clostridium cellulolyticum H10] Length = 2077 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 52/383 (13%), Positives = 100/383 (26%), Gaps = 77/383 (20%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107 LE + + R + N + K Y YN S + + Sbjct: 440 LEDSENQKRPQNEIEQDQNEYTAAISKKVNYR-YNPS---------DDIGAGGQKTKYKA 489 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLL------YKICKNFSGIELHPDTVPDRVMSNIYEH 161 + A + +D + IA ++ +L + + F+ + Sbjct: 490 NVEAIKLLKDIEKEKRIATSQEQSILTRYTGWGGLSQVFN---AEAKGWENEYQELKELL 546 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + S + T V+ + +P G G F + Sbjct: 547 TEEEYSSARASTPNAHYTEPQVIKAIYK--------ALSRFGFKGGNILEPAMGIGLFYS 598 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++D +G EL+ + + + +I+ Sbjct: 599 LIPEDISD---------KSQLYGVELDSISGRISK------------QLYQKADIRIQ-G 636 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 F+ F + N PFG ++ +K + N + Sbjct: 637 FEDTDFSDNFFDIAVGNVPFG-DYKLRDKRYDKLNLNIHD-------------------Y 676 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--- 398 K GG A + S L RR+L E + + LP + F Sbjct: 677 FFAKTLDKVRPGGIIAYITSKGTL-----DKANGSFRRYLAERAELIGAIRLPNNAFKQI 731 Query: 399 FRTNIATYLWILSNRKTEERRGK 421 T++ T + L R + Sbjct: 732 ANTDVTTDIIFLQKRDHAIILDE 754 >gi|47096795|ref|ZP_00234377.1| conserved domain protein [Listeria monocytogenes str. 1/2a F6854] gi|47014828|gb|EAL05779.1| conserved domain protein [Listeria monocytogenes str. 1/2a F6854] Length = 321 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 107/334 (32%), Gaps = 52/334 (15%) Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 SY+ + + + +F+ L L K+ +++ IEL + + + Sbjct: 15 ISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIELENFSNEEIRKG-LQL 70 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 L++ G + MTP + + LL ++ DP CGT L Sbjct: 71 ALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIQKKKNISILDPACGTANLL 122 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 T +N + K + G +++ ++ + + ++ Sbjct: 123 TTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL------- 165 Query: 281 TLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 L +D +S+ P G + D++A E E F L Sbjct: 166 -LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFL 214 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ + GG ++ + + +++ +N IE I+ LP L Sbjct: 215 FIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETL 266 Query: 398 FFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430 F + IL + +V L N + L Sbjct: 267 FKSEQARKSILILRKADVNVKPPKEVLLANLSSL 300 >gi|312128987|ref|YP_003996327.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132] gi|311905533|gb|ADQ15974.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132] Length = 1805 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 68/319 (21%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180 +L I ++ L++ + F TP Sbjct: 49 VLNPIENAIDINHWRKTEHDLFPLTQELHTLLKENSENDKQYRRYVDSMKSSVLTAFYTP 108 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 ++ +A L + + K +P+ G G F+ + + ++ + Sbjct: 109 PQIIDAVSATLRENGLDIQK--------FLEPSAGIGSFIQSFSENQKASTTAYEKDLLT 160 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 ++L PE + + + E ++ + + SN P Sbjct: 161 GKVLKQLYPE------SNVRVSGFEEISEKEHNS-----------------YDVVASNIP 197 Query: 301 FGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 FG D KE + R S + FL K GG A + Sbjct: 198 FGDTSVFDLSYSRSKETAKVQATR--------SIHNYFFL-----KGTDMLREGGLLAYI 244 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTE 416 S L + + IRR L++++ + ++V LP +LF T + + L IL + Sbjct: 245 TSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAK 300 Query: 417 ERRGKVQLINATDLWTSIR 435 + L A +L+ R Sbjct: 301 KG-----LTEAEELFCQSR 314 >gi|149176311|ref|ZP_01854926.1| putative DNA methylase [Planctomyces maris DSM 8797] gi|148844913|gb|EDL59261.1| putative DNA methylase [Planctomyces maris DSM 8797] Length = 1245 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 71/243 (29%), Gaps = 43/243 (17%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE---------LHPDTVPDRVMSNIY 159 + +F + + + + ++ F I+ R + ++Y Sbjct: 132 PGTREVFSEHNPLRELPQWLSGDAAGELLDFFQKIDANAGGLVHDFTDADWDTRFLGDLY 191 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM------------IR 207 + L + TP V L+P F Sbjct: 192 QDL----SEAARKKYALLQTPEFVEEFILDRTLEPALDEFGLDAPPVNDPQGHPVTQAGF 247 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETHAVCVAG 258 + DP CG+G FL + D + + HG ++ P A+ Sbjct: 248 RMIDPACGSGHFLLGTFPRLLDRWFRQQPGGKVRDLVQKTLDSIHGVDVNPYAIAIARFR 307 Query: 259 MLIRRLES-DPRRDLSK-----NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 +L++ +++ D + + ++ G +L + R + + + + A Sbjct: 308 LLLKAMQACDIHQLKNAPAFTLHLACGDSLL---HSPLRGGQQVFDFELTSDDAECEHAY 364 Query: 313 EKE 315 + E Sbjct: 365 QSE 367 >gi|317476919|ref|ZP_07936162.1| type I restriction enzyme [Bacteroides eggerthii 1_2_48FAA] gi|316907094|gb|EFV28805.1| type I restriction enzyme [Bacteroides eggerthii 1_2_48FAA] Length = 239 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP + L + + + DPTCG+G L H Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 P G+++ + V ML+ + +L FT + Sbjct: 148 ---NPGNYLVGEDISRTCCMITVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328 + P G + E + E GRF + Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231 >gi|212692341|ref|ZP_03300469.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855] gi|212665218|gb|EEB25790.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855] Length = 1000 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 38/142 (26%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP +V +L SP + D CG G F Sbjct: 60 EYAEAKKEFEMGQFFTPHEVCRDMVDVL----------SPTSSEMILDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +P +G +++ + AV +I++ Sbjct: 107 ----------NHLPNQHNAYGFDIDSKAVAVAR------------YLYPDAHIEKCD--I 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKW 305 + + +RF + NPPF K+ Sbjct: 143 QQYHSEQRFDAIIGNPPFNLKF 164 >gi|124262642|ref|YP_001023112.1| hypothetical protein Mpe_B0098 [Methylibium petroleiphilum PM1] gi|124261888|gb|ABM96877.1| hypothetical protein Mpe_B0098 [Methylibium petroleiphilum PM1] Length = 455 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 76/226 (33%), Gaps = 31/226 (13%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R + + T VV+ +L P R L DP+CG G FL A Sbjct: 9 RELAIDALHASTAIYTADPVVNQLLDMLDW---------PNGTRRLVDPSCGDGAFLGRA 59 Query: 224 MNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAG----MLIRRLESDPRRDLSKNI-Q 277 + + + V G E+ + A ++ ++ R L++ I + Sbjct: 60 LERLLLAYPNIDDARLSHVIEGWEIHFFAVSEARARVAGVLVTHGRQAADARALAEEIVR 119 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 G L + +H NPP+ ++ + +++ LP + ML Sbjct: 120 HGDFLLE-GPREPVYHAIAGNPPY-LRFANVPQPLRDDYERE--------LPDYATADML 169 Query: 338 --FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 FL A L G G A V S LFN A I + L Sbjct: 170 HSFLDRCALSLH----GDGEIACVTSDRWLFNENAARLREAIGQRL 211 >gi|52842547|ref|YP_096346.1| protein methyltransferase HemK [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629658|gb|AAU28399.1| protein methyltransferase HemK [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 287 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168 + F + +LE LL + F+ HPD + Y +I++ Sbjct: 12 LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67 Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 G +F + PR L L+ ++ D Sbjct: 68 LPIAYITGQREFWSLSLKVTPNVLIPRHETERLVELALELIPD------KENVSVLDLGT 121 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G K P+ + E + L Sbjct: 122 GSGAIALAL----------AKERPLWHIDACDFSKEALELARYNAKTLGLN--------- 162 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 NI + + K++H +SNPP+ + H RF P +S Sbjct: 163 NINFCHSYWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKHGDVRFEPTSALVSSQ 214 Query: 335 S-MLFLMHLANKLELPPNGGG 354 + L ++ G Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235 >gi|268611027|ref|ZP_06144754.1| methylase [Ruminococcus flavefaciens FD-1] Length = 918 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 56/222 (25%), Gaps = 54/222 (24%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 + + + + + + + ++E + E T + +H Sbjct: 285 DEIVSLLLHNASEDFDWSGISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDP 341 Query: 191 LLDPD-----DALFKESPGMIRT--------------LYDPTCGTGGFLTDAMNHVADCG 231 L D + + R DP G+G FLT+ + Sbjct: 342 LFLDDLKAELEEIKTLKVEKTRRDRLQAFRKKLSTLVFLDPAAGSGNFLTETYISLRRLE 401 Query: 232 SHHKIPPIL----------------VPHGQELEPETHAVCVAGMLIRRLESDPRRD---- 271 + +G E+ V + I + D Sbjct: 402 NDALYEETHGQMMLGDNDVIQVSIGQFYGIEINDFAVTVAKTALWIAESQMMQETDTLMQ 461 Query: 272 ---------LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPF 301 NI +G+ L D + + Y + NPPF Sbjct: 462 INLDFLPLKSYANIVEGNALRTDWKSVVDKSKLSYIMGNPPF 503 >gi|323181484|gb|EFZ66911.1| N-6 DNA Methylase family protein [Escherichia coli 1357] Length = 610 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 73/249 (29%), Gaps = 48/249 (19%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A ++ F P ++ +IY ++ S + TP +V Sbjct: 101 AERTGELIAQF------PAEDAGYLIGSIYTVML---PSAYRSELGAYYTPPPLVARLLD 151 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG----- 244 L ++ DP CG G FL A + P + Sbjct: 152 LAEKSGVDFS------HASVIDPACGGGAFL--APVAIRMLKKDKGSSPEWMLRRISRRL 203 Query: 245 QELEPETHAVCVAGMLIRRLESDPR------RDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +E + A +++ P R I L +D F+G + + N Sbjct: 204 KGIEIDPFA-AWMSLVLLESVLMPLCVKVKRRLPEDTIIVADALQQDKFSG--YDLVVGN 260 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRA 356 PP+G+ K + R G ++ LF ++ G Sbjct: 261 PPYGRVTLDIKT-------REKYSRSLFGH-----ANLYGLFTDLAVRMVKEKT---GVI 305 Query: 357 AIVLSSSPL 365 A + +S L Sbjct: 306 AFLTPTSFL 314 >gi|300867418|ref|ZP_07112073.1| N-6 DNA Methylase family [Oscillatoria sp. PCC 6506] gi|300334608|emb|CBN57241.1| N-6 DNA Methylase family [Oscillatoria sp. PCC 6506] Length = 1067 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 42/221 (19%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L L ++ +L I D+ + D + + + +F Sbjct: 245 LRRLFNSIIETDLLGQINWAIDDLVELLGRVDMTVILENFGRRTRQSDPVVHF------- 297 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL------------LLDPD 195 YE + + + + + TP VV L D Sbjct: 298 -----------YETFLAAYNPALRKSRGVYYTPEPVVSFIVRSVDYILKNRFNLPLGLAD 346 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQ 245 + ++ + DP GTG FL ++ + I G Sbjct: 347 NTKNPDTQKPRVQILDPATGTGTFLYGVVDRIYQNLEDMGISGSWNQYVQENLLTRLFGF 406 Query: 246 ELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 EL +A+ G+ ++ L + + +TL + Sbjct: 407 ELLMAPYAIAHLKLGLQLQNLGYEFSSKQRLGVYLTNTLDE 447 >gi|74312097|ref|YP_310516.1| putative methylase [Shigella sonnei Ss046] gi|73855574|gb|AAZ88281.1| putative methylase [Shigella sonnei Ss046] Length = 610 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 73/249 (29%), Gaps = 48/249 (19%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A ++ F P ++ +IY ++ S + TP +V Sbjct: 101 AERTGELIAQF------PAEDAGYLIGSIYTVML---PSAYRSELGAYYTPPPLVARLLD 151 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG----- 244 L ++ DP CG G FL A + P + Sbjct: 152 LAEKSGVDFS------HASVIDPACGGGAFL--APVAIRMLKKDKGSSPEWMLRRISRRL 203 Query: 245 QELEPETHAVCVAGMLIRRLESDPR------RDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +E + A +++ P R I L +D F+G + + N Sbjct: 204 KGIEIDPFA-AWMSLVLLESVLMPLCVKVKRRLPEDTIIVADALQQDKFSG--YDLVVGN 260 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRA 356 PP+G+ K + R G ++ LF ++ G Sbjct: 261 PPYGRVTLDIKT-------REKYSRSLFGH-----ANLYGLFTDLAVRMVKEKT---GVI 305 Query: 357 AIVLSSSPL 365 A + +S L Sbjct: 306 AFLTPTSFL 314 >gi|317481229|ref|ZP_07940300.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36] gi|316902562|gb|EFV24445.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36] Length = 1662 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 101/356 (28%), Gaps = 62/356 (17%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP + A F+ + ++T +P+ G GGFL A Sbjct: 98 AFYTPT----FFVQTVATQIQAAFRNNGLQMKTFLEPSAGIGGFLPIA------------ 141 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294 P T++ + L +D ++ I G T+ + K F Sbjct: 142 ------------TPATYSYAFEKDNVTGLVLSALQDGTRIIIDGFETIDEQDIDHKTFDV 189 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 SN PFG K + F+M +KL N GG Sbjct: 190 VASNIPFG---------NFKVFDYDFYNKDSVHAQATKSIHCYFIMKGIDKL----NEGG 236 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411 A + +R +L+ N + + LP LF +T + +I Sbjct: 237 IIAFIAPRGV----ADAPANKFLRNYLVHNANMITALRLPDTLFMQTGGIEVGCDFFIFQ 292 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 K L + L+ + E + +I S++ + Sbjct: 293 K-----HSHKAILTSKEQLFLQVAKETVPDTKYTTEYFNRIF-TLSKTVVATMSQIQKNQ 346 Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527 Y R + + + ++ +D+ L + ++ I Sbjct: 347 FGKYVR-------KYQWQGTEDAMSMHLSDLLKSDLERYFRKGLFQAQGKEIKNIQ 395 >gi|258648838|ref|ZP_05736307.1| putative DNA methylase [Prevotella tannerae ATCC 51259] gi|260850951|gb|EEX70820.1| putative DNA methylase [Prevotella tannerae ATCC 51259] Length = 2321 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 50/351 (14%), Positives = 109/351 (31%), Gaps = 44/351 (12%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ + +R DP+ G G F A G + + Sbjct: 111 IVSAISDALVSTNLQVRRCLDPSAGMGAF---AETFARQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + + + +L ++ SN PFG D Sbjct: 166 LHPYGKGNIFVHNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYNRGKDTLKRESTRTIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ +F T++ + L +L + ++E + Q + Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTSKEISEDIEQQFV 315 Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--DYRTFGYRRIKVLR 482 + + K+ + + I V+ E + + + Sbjct: 316 ETVSVPKEEGSSVVFKQNSLFVGDWKDISHRTVATERIMGTDPYGRPAWEYRFTGGIEEM 375 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 + L R++ + + P+ + W + ++Q++ AE Sbjct: 376 AESLRTQLSLEMGQRIDRKL-YETGIPMTKEEWQVRVNEILQKLGVTVQAE 425 >gi|303237812|ref|ZP_07324370.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN] gi|302482037|gb|EFL45074.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN] Length = 2068 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 53/397 (13%), Positives = 116/397 (29%), Gaps = 63/397 (15%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH------VADCGSHHKIPPILVPHG 244 ++ IR DP+ G G F + +I + P+G Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMGAFTETFAKRAGMVDAMEKDLLTARISQSIHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 Q +++R+ + +L +++ SN PFG Sbjct: 171 QG-----------NIIVRQEPFEAIGELED--------------KEKYDLITSNIPFG-- 203 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D ++E+ G+ I + + K GG A + S Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 L + R IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPRNE----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEG 309 Query: 422 V--QLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR-- 476 + Q + + + K + + I ++ E + + YR Sbjct: 310 IEQQFVETLSVPKEEGSSVVFKHNSLFAGDWKDIAHRIIATERTMGTDPYGKPAWEYRFD 369 Query: 477 --------RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 I+ L + D+ + + + + + P Sbjct: 370 GSIDDMAKSIRTQLSLEVEQRFDRKLYETGIPMTEEERQKEAEKQLRKLGITVNLPKEDP 429 Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 E+ ++ + + K + + Sbjct: 430 KVHKEADNAYNLMPDSIRKRLPKLYSTEKELIGDKVA 466 >gi|241664253|ref|YP_002982613.1| type II DNA modification enzyme [Ralstonia pickettii 12D] gi|240866280|gb|ACS63941.1| putative type II DNA modification enzyme [Ralstonia pickettii 12D] Length = 1306 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 47/182 (25%) Query: 149 TVPDRVMSNIYEHLI------------RRFG-----------SEVSEGAEDFMTPRDVVH 185 + + ++YE L+ R FG + + TP +V Sbjct: 417 DMDSEELGSVYESLLELVPVVTLGGGARIFGFVGDDEEGSTKGNARKLTGSYYTPDSLVQ 476 Query: 186 LATALLLDP-DDALFKESPGM------IRTLYDPTCGTGGFLTDAMNHVAD--------- 229 L+P K +P ++ DP CG+G FL A +A+ Sbjct: 477 ELIKSALEPVIAQTLKANPQEPVKALLGLSVCDPACGSGHFLLAAARRIAEEVAQLNAAD 536 Query: 230 -------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGST 281 + +G + P + + + D P L +++ G Sbjct: 537 GNPLPDDYRHALRDVVAHCIYGVDKNPMAVELARTALWLEAYTPDRPLTFLDHHLRCGDA 596 Query: 282 LS 283 L Sbjct: 597 LL 598 >gi|317180447|dbj|BAJ58233.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32] Length = 1149 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 76/577 (13%), Positives = 157/577 (27%), Gaps = 71/577 (12%) Query: 43 RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RL+ E + SNI + + + TS + +N Sbjct: 357 RLKDIFEKNPEFFHGFLDSLRGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 410 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 +++ I+ D L+ LY+ K + ++ N+Y Sbjct: 411 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 466 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218 + + SE TP +VV + T++DP GTG Sbjct: 467 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQNITIFDPFTGTGS 526 Query: 219 FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 F+ ++ D S K + ++ + + + + D KNI Sbjct: 527 FIARLLSKENDLISDESLKEKFLNHLFAFDIVLLAYYIALINITQAAQNRDGSLKNFKNI 586 Query: 277 QQGSTL-----SKDLF------------------TGKRFHYCLSNPPF--GKKWEKDKDA 311 +L D + + NPP+ G K + D + Sbjct: 587 ALTDSLDFYEEKNDKGVFDFFKDLEENKEIKSTIEKQNIRVIIGNPPYSAGAKSQNDNNQ 646 Query: 312 VEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 K + G K+ + L+ G V++ + Sbjct: 647 NLLHKKLEKRVYEKYGQISTAKVGATTRDTLIQSIYMASELLKDKGVLGFVVNGGFI--- 703 Query: 369 RAGSGESEIRRWLLENDLIEAIVAL--------------PTDLFFRTNIATYLWILSNRK 414 + SG+ R+ + + ++ L +F + AT I + Sbjct: 704 DSKSGDG-FRKCVAKEFAHLYVLNLRGNARTSGENRKKEGDGIFDSGSRATIAIIFFVKD 762 Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 + + + D + ++ D + + ++ R G Sbjct: 763 ASVKNSAIHYYDIGDYLKREDKLNRLAHFLDLDAIP-----FETITPNNKGDWINQREDG 817 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + ++ PL+ L + + ++ P +F D L +Q+ A+ Sbjct: 818 FDKLI---PLKRDKKLQNNSIFDINSNGVTSGRDPWVYNFSPDSLMQNVQKCMDTYNADL 874 Query: 535 FVKESIKSNEAKTL-KVKASKSFIVAFINAFGRKDPR 570 + K K S ++ D Sbjct: 875 KHFNAHFREAFKQRTKGVKSGELYKQLNDSEITTDKT 911 >gi|154491462|ref|ZP_02031088.1| hypothetical protein PARMER_01071 [Parabacteroides merdae ATCC 43184] gi|160890077|ref|ZP_02071080.1| hypothetical protein BACUNI_02517 [Bacteroides uniformis ATCC 8492] gi|154088476|gb|EDN87521.1| hypothetical protein PARMER_01071 [Parabacteroides merdae ATCC 43184] gi|156860465|gb|EDO53896.1| hypothetical protein BACUNI_02517 [Bacteroides uniformis ATCC 8492] Length = 246 Score = 48.4 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 20/121 (16%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L R G + F TP + L + + + DP Sbjct: 85 DALGDLFMALSSRKGQQA---QGQFFTPVHICDLMVMC-------TETDGKKTGQRINDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + + MLI + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTICNMLIHGCVGEVIHHD 184 Query: 273 S 273 S Sbjct: 185 S 185 >gi|133757317|ref|YP_001096236.1| hypothetical protein pLEW279a_p37 [Corynebacterium sp. L2-79-05] gi|110084201|gb|ABG49355.1| hypothetical protein [Corynebacterium sp. L2-79-05] Length = 581 Score = 48.4 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 51/195 (26%) Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH--------------------HKIPPILVPHGQELE 248 DP CG G FL A + + + I +G EL Sbjct: 31 FCDPACGAGNFLLTAYKELRRIETDLIVAIRQRRGETGMSLNIEWEQKLSIGQFYGFELN 90 Query: 249 PETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDLFTGKRF--- 292 + M + +++ + +I G+ L+ D Sbjct: 91 WWPAKIAETAMFLVDHQANKELANAVGRPPQRLPITITAHIVHGNALALDWTEALPKAVG 150 Query: 293 -HYCLSNPPFG---KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + NPPF + ++ + ++ + + R L+L Sbjct: 151 ETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKNISRLDYVT-----------CWHIKSLDL 199 Query: 349 PPNGGGRAAIVLSSS 363 GR A V ++S Sbjct: 200 FSTRNGRFAFVTTNS 214 >gi|225155242|ref|ZP_03723736.1| helicase domain protein [Opitutaceae bacterium TAV2] gi|224803997|gb|EEG22226.1| helicase domain protein [Opitutaceae bacterium TAV2] Length = 1642 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 67/256 (26%), Gaps = 58/256 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S + T V+ A + + +P CG G F Sbjct: 104 EYRSARATVLNAHYTSPTVIRAMY--------AALERLGFERGRVLEPACGLGHFFGLMP 155 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + G E++P T + + +I+ + + Sbjct: 156 ETMRS---------RSELTGIEIDPLTARLA------------SQLYPRADIR-ATAFEE 193 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F +SN PFG D + +++ + Sbjct: 194 ASLRTNSFDVAISNVPFGDYAPFDPKLNKGKYRIHDY-------------------FFIA 234 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 LE GG I G +S +R L E + + LP D F T Sbjct: 235 ALERVRPGGFVVFI------TSRGTMDKRQSGLRELLAEGADLVGAIRLPNDAFKQNANT 288 Query: 402 NIATYLWILSNRKTEE 417 + T + L R E Sbjct: 289 EVTTDIVFLRKRAPGE 304 >gi|83718564|ref|YP_443638.1| helicase domain-containing protein [Burkholderia thailandensis E264] gi|83652389|gb|ABC36452.1| helicase domain protein [Burkholderia thailandensis E264] Length = 1063 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 64/229 (27%), Gaps = 20/229 (8%) Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 N + + LEK Y K + + V+ +Y+ R + Sbjct: 790 NVLDVLHEHRLDKEADTLEK---FYDSVKLRAEGIDNAAGKQKIVV-ELYDKFFRNAFPK 845 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVA 228 ++E TP +VV + A F ++ G + DP GTG F+T + Sbjct: 846 MTERLGIVYTPVEVVDFIIHSVGHVLQAEFGQTLGSKGVHIIDPFVGTGTFVTRLLQSGL 905 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDL 286 H E+ + + + + + + + I T Sbjct: 906 ITPEELPHKYKHEIHANEIVLLAYYIACINIEAVYHGM-VGGKYQPFEGICLADTFQLYE 964 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 SN + ++ + R G P S G Sbjct: 965 KEDLVDAVQASN------------SARRKKQKKLDIRVIFGNPPYSAGQ 1001 >gi|312887841|ref|ZP_07747428.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603] gi|311299660|gb|EFQ76742.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603] Length = 163 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 13/159 (8%) Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-RRGKVQLINATDL---------W 431 ++ + I+ LPT +F+ + T + +E KV + + Sbjct: 1 MDKCNLHTILRLPTGIFYAAGVKTNVLFFERGTSETGNTKKVWFYDMRSNTHSFGKRTPF 60 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVL-RPLRMSFI 489 T + +G + + Y N + + + D R + R ++ + + Sbjct: 61 TRVAFDGFVHAYTGGIHIDDVFNTYDGNVNNEQRAIIQDSRWSCFTRKEIENKNDILDLG 120 Query: 490 LDKTGLARLE-ADITWRKLSPLHQSFWLDILKPMMQQIY 527 L + +E D +L+ +I +++ I Sbjct: 121 LIQEKDYSIENQDNNPIELAKSALKEIEEIQTELLELIA 159 >gi|317057900|ref|YP_004106367.1| hypothetical protein Rumal_3270 [Ruminococcus albus 7] gi|315450169|gb|ADU23733.1| hypothetical protein Rumal_3270 [Ruminococcus albus 7] Length = 928 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 72/273 (26%), Gaps = 61/273 (22%) Query: 83 TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142 +++ + ++ +A+F +F D + I R + + +G Sbjct: 241 IELFTVLDTKPEDRDPYMDDDLAAFPYVNGGLFADENIE--IPRFTDEIVDLLVNNASAG 298 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD------- 195 + + + ++E + E T + +H L + Sbjct: 299 FDW--SEISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDPLFLDELKAEFNT 353 Query: 196 ------------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------- 234 T DP CG+G FLT+ + + Sbjct: 354 ICETKVDKTRKAKLEQFRDKLASLTFLDPACGSGNFLTETYISLRRLENEALQVIHGGQM 413 Query: 235 ----------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----------- 273 I +G E+ V + I + + Sbjct: 414 LIGGEGDFNPIKVGIGQFYGIEINDFAVTVAKTALWIAEAQMMHETEEIIQYTLDFLPLK 473 Query: 274 --KNIQQGSTLSKDLF---TGKRFHYCLSNPPF 301 NI +G++L D + Y + NPPF Sbjct: 474 SYANITEGNSLRIDWESVVPKDKLSYIMGNPPF 506 >gi|270290937|ref|ZP_06197160.1| site-specific DNA-methyltransferase (adenine-specific) [Pediococcus acidilactici 7_4] gi|270280333|gb|EFA26168.1| site-specific DNA-methyltransferase (adenine-specific) [Pediococcus acidilactici 7_4] Length = 343 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 58/365 (15%), Positives = 111/365 (30%), Gaps = 54/365 (14%) Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + GS +D E K+ Y + S + L N + DN I + Sbjct: 4 SEEGSQMDTEKIEKI--YRVFKES----AELLQKNLDVDFLDAFIETGDNL--ITGEIQV 55 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 L ++ +F+ E P+ + + ++ + A TP Sbjct: 56 EDGKPDQATVQKLKQVYADFNWQEYEPE-----ELRKAIQLVMIQANRVERIQANHQFTP 110 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + L ++ +++DP GTG L+ +N+ D Sbjct: 111 EAIGMLFNYII------ENLPLSQDQVSIFDPAVGTGNLLSTILNYFQDH------QVKF 158 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 G + + A+ + L+ D S D K +S+ P Sbjct: 159 NGTGIDNDDTMLAIASMSFIFEHLKVDLYHQD----------SIDNLLVKNADIVVSDLP 208 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G E G R G S + + + ++ GG + L Sbjct: 209 VGY-------YPIDERTVGFETRSSEGH------SFVHHLLIEQSMKAVRPGGF--GVYL 253 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERR 419 S LF ++ + + ++AI+ LP+ +F + IL + ++ Sbjct: 254 VPSNLFQTEEA---KKLLAFFHDKIYLQAILNLPSKMFKDAKAQKSILILQKVGQNAKQA 310 Query: 420 GKVQL 424 +V L Sbjct: 311 DQVLL 315 >gi|257783986|ref|YP_003179203.1| type II restriction enzyme methylase subunits- like protein [Atopobium parvulum DSM 20469] gi|257472493|gb|ACV50612.1| type II restriction enzyme methylase subunits- like protein [Atopobium parvulum DSM 20469] Length = 919 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 82/309 (26%), Gaps = 80/309 (25%) Query: 79 SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---------IFED-----FDFSSTI 124 +FYN L + + R L++ + N F F S I Sbjct: 220 AFYNY----LKDVPANRIRTALKNLFHALDTNLSDRDPYDLEVKAFPYVNGGLFRDDSEI 275 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 + + + S I + + I+E + E T + + Sbjct: 276 PNFTDETKSFLLDEVSSHINW--SQISPTIFGGIFESTL---NPETRRSGGMHYTSPENI 330 Query: 185 HLATALLLDPD-------------------DALFKESPGMIR--TLYDPTCGTGGFLTDA 223 H L D + K I T +DP CG+G FLT+ Sbjct: 331 HKVIDPLFLDDLKEELKSICTEEGTTPRKRENALKRFHEKICSLTFFDPACGSGNFLTET 390 Query: 224 MNHVADC--------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + K + +G E+ V + I R Sbjct: 391 YTCLRKLEDTVLNELRKGQTGFSLGDEEETGKRVSLNQFYGIEINDFAVTVAETALWISR 450 Query: 264 LESDPRR-------------DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEK 307 L+++ +I +G+ L D + +Y + NPPF Sbjct: 451 LKANGETSMFYDAGGDDFPLSEKAHIVEGNALRIDWNSVLLASECNYIMGNPPFVGYSNH 510 Query: 308 DKDAVEKEH 316 + + Sbjct: 511 SAEQQKDRA 519 >gi|116873011|ref|YP_849792.1| hypothetical protein lwe1595 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741889|emb|CAK21013.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 332 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 59/350 (16%), Positives = 114/350 (32%), Gaps = 55/350 (15%) Query: 88 LSTLGSTNT--RNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 L +T +N LE SY+ + + + +F+ L L K+ +++ IE Sbjct: 10 FQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIE 66 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 L + + + L++ G + MTP + + LL Sbjct: 67 LENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIRKK 117 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 ++ DP CGT LT +N + K + G +++ ++ + Sbjct: 118 KNISILDPACGTANLLTTVINQL-----ELKGDVTVHASGVDVDDLLISLA-----LVGA 167 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + ++ L +D +S+ P G + D++A E E Sbjct: 168 DLQRQKMTL--------LHQDGLANLLVDPVDIVISDLPVGY-YPDDENAKTFELCREEG 218 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F LF+ + GG ++ + + +++ Sbjct: 219 HSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFI 261 Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430 +N IE I+ LP LF + IL + +V L N + L Sbjct: 262 KKNGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311 >gi|332882191|ref|ZP_08449821.1| hypothetical protein HMPREF9074_05619 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679814|gb|EGJ52781.1| hypothetical protein HMPREF9074_05619 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1037 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 82/307 (26%), Gaps = 70/307 (22%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + YE + F +V + + TP VV+ L F G+ Sbjct: 293 KDATKDPIVHFYEDFLEAFDPQVRKALGVWYTPLPVVNFMVRTLDTLLKEQFHLPQGIAD 352 Query: 208 T---------------------------LYDPTCGTGGFLTDAMNHVADCGSHH------ 234 T + DP GTG FL + ++A Sbjct: 353 TSKIKVQTQQDNKVAGFDIEEKEYHRVQILDPATGTGTFLAQIIEYIAQQFKEQQGIWQN 412 Query: 235 --KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + + +G EL ++A+ ML+ + I ++L + Sbjct: 413 YVQEHLLPRLNGFELLMASYAIAHLKLDMLLS-QTQITQSTNRIQIYLTNSLEEPTPDRS 471 Query: 287 -----------------FTGKRFHYCLSNPPFGKKWEKDKDAV---EKEHKNGELGRFGP 326 + NPP+ + +++K + Sbjct: 472 LPLARWLSDEANEANRIKRDTPVMCVIGNPPYNGSSTNKGSWIMNLMEDYKKEPNTKNKL 531 Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 PK + + + + NG G + L N +R LL+ Sbjct: 532 AERNPKWINDDYVKFIRFGAHF-IEKNGNGILIYINPHGFLDNPTFRG----MRYHLLKT 586 Query: 385 -DLIEAI 390 D I I Sbjct: 587 FDSIHTI 593 >gi|313608580|gb|EFR84457.1| N-6 DNA methylase [Listeria monocytogenes FSL F2-208] Length = 227 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 40/233 (17%) Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 ++ DP CGT LT +N + K + G +++ ++ + Sbjct: 10 QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----L 59 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + ++ L +D +S+ P G + D++A E Sbjct: 60 VGADLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCR 110 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 E F LF+ + GG ++ + + Sbjct: 111 EEGHSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD---- 153 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430 +++ +N IE I+ LP LF + IL + + +V L N + L Sbjct: 154 KFIKKNGHIEGIIKLPETLFKSEQARKSILILQKADVDVKPPKEVLLANLSSL 206 >gi|257094931|ref|YP_003168572.1| hypothetical protein CAP2UW1_3381 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047455|gb|ACV36643.1| conserved hypothetical protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1202 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 27/166 (16%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + +FS E R + ++Y+ L + TP V L+ Sbjct: 169 GTLLHDFSDPEW-----STRFLGDLYQDL----SEAAQKKFALLQTPEFVEEFILDRTLN 219 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHG 244 P A F L DPTCG+G FL + +C ++ +G Sbjct: 220 PAIAEFGYRE---VRLIDPTCGSGHFLLGGFARLLECWQKNEPGRNARDAVQQALNGIYG 276 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSK------NIQQGSTLSK 284 +L P A+ +LI L++ L++ N+ G +L Sbjct: 277 VDLNPFAVAIARFRLLIAALKACAETSLAEAPNFRFNLAAGDSLLH 322 >gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC 49725] gi|227077180|gb|EEI15143.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC 49725] Length = 1668 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 70/285 (24%), Gaps = 40/285 (14%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + LEK Y+ E+ + +V+ +YE R+ + +E Sbjct: 830 LSKANLDTETESLEK---FYESV-RVRASEVTSASGKQQVIKELYERFFRKAFKKQAEAL 885 Query: 175 EDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 TP ++V + K ++ DP GT F+ + Sbjct: 886 GIVYTPVEIVDFILRAADEVSRKHFDKGLSDEGVSILDPFAGTSTFMVRLLQSGLIKPED 945 Query: 234 HKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 E+ T+ R E P NI T Sbjct: 946 MARKYANELFATEIMLLAYYVSAVNIETTYNALREEAAQRNGEPTPDYVPFTNIALADTF 1005 Query: 283 --SKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 +D + + NPP+ + D + G R Sbjct: 1006 QVHEDGDIPDLNIFRENNATIERQKNAPINVVIGNPPYSAGQKSANDLNANQKYPGLDKR 1065 Query: 324 FGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSS 363 S + + L+ + G A V + Sbjct: 1066 IAETYAAKSTATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGG 1110 >gi|253570892|ref|ZP_04848300.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839841|gb|EES67924.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 1000 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 52/216 (24%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP +V +L SP + D CG G F Sbjct: 60 EYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 NH+ + +G +++ + +V +I++ Sbjct: 107 -NHLPNL---------HNAYGFDIDGKAVSVAR------------YLYPDAHIEKCD--L 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + +RF + NPPF +K+ K + E G+ LM + Sbjct: 143 RQYYPEQRFDIVIGNPPFNQKF-DYKLSQEYYMDKAYDVLNPAGI----------LMIIV 191 Query: 344 --NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + ++ R A + +S+ F G+ S Sbjct: 192 PGSFMQSGFWEKTRIAGI-NSNFSFVGQTKLAPSAF 226 >gi|332708412|ref|ZP_08428389.1| hypothetical protein LYNGBM3L_19280 [Lyngbya majuscula 3L] gi|332352815|gb|EGJ32378.1| hypothetical protein LYNGBM3L_19280 [Lyngbya majuscula 3L] Length = 566 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 31/207 (14%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F ++ SE T R+VV L D P + +P+ G G FL + Sbjct: 19 FAAKSSEERGAIFTRREVVEFILDLTGYTVD-----RPLPDYRILEPSIGEGDFLVPIVE 73 Query: 226 HVADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLI----RRLESDPRRDLSK 274 + H E+ P++ +L + D L Sbjct: 74 RLLTAYGAHDSNQVRLVDSLHNSIRAVEINPQSFENTRIKLLRLLQHHGINQDDAYQLLT 133 Query: 275 N-IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPK 330 + + +G L DL F + + NPP+ + E D + E++ N R +P Sbjct: 134 SWLIEGDFLLVDL--PGSFTHAVGNPPY-VRQELIPDILLAEYRARYNTIYDRADLYVP- 189 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAA 357 F+ + LE G A Sbjct: 190 -------FIERALSSLEPGGVLGFICA 209 >gi|206890615|ref|YP_002248359.1| modification methylase TaqI [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742553|gb|ACI21610.1| modification methylase TaqI [Thermodesulfovibrio yellowstonii DSM 11347] Length = 469 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 107/312 (34%), Gaps = 44/312 (14%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + ++ + + F TP +V L+ + K S ++ +P CG F Sbjct: 27 QFILNSNLKNIKKDYGIFFTPEWLVDFMVNLI-----DIDKLSSKEDISILEPACGLAQF 81 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L +H + G E+ E +I L S + I++ Sbjct: 82 LFGIKR------NHSSLFERAKLIGIEINQE---------VINYLVSFDISSKIELIKED 126 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 L + F + NPP+G + ++ E + + + L + G Sbjct: 127 YLLWE---ANTSFDLIIGNPPYGIPSLSEHYTIKVEPEIKKKYK---TLYETWYGKYNVY 180 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 K G+ ++ ++ + ++R++L +N AI+ L +D+F Sbjct: 181 GAFIEKSIKLLKAEGQLIFIVPATFMILDE----FKKLRKFLSQNGG-TAIIYLGSDVFK 235 Query: 400 RTNIATYLWILSNRKTEERRGKVQL------------INATDLWTSIRNEGKKRRIINDD 447 + + IL K++E +V++ IN+ I E + ++ Sbjct: 236 PEADVSCV-ILDFVKSKEFVNRVEILEYHRNKIKAVKINSNWQGEVITFETDYSKKLDHS 294 Query: 448 QRRQILDIYVSR 459 ++ DIY R Sbjct: 295 CSHKLGDIYEIR 306 >gi|76802196|ref|YP_327204.1| restriction/modification enzyme [Natronomonas pharaonis DSM 2160] gi|76558061|emb|CAI49647.1| probable restriction/modification enzyme [Natronomonas pharaonis DSM 2160] Length = 1258 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 10/108 (9%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 F+ + + ++ ++Y+ + F E + +F TP+ VV + Sbjct: 384 FNVLRFDFGDIQGDLLGDLYQ---KYFDPETRKALGEFYTPQPVVDYIMDGVGYERGVS- 439 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L DP CG+G FL +A+ + ++ P H Q+L Sbjct: 440 ------NERLIDPACGSGTFLVEAVERYIEDVEQYEDDPDWKEHLQDL 481 >gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis FRC41] gi|300685429|gb|ADK28351.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis FRC41] Length = 1621 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 52/358 (14%), Positives = 94/358 (26%), Gaps = 57/358 (15%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 E + LEK Y E+ + +V+ +YE ++ + Sbjct: 795 MMDALEAAHLDTETESLEK---FYDSV-RVRASEVSSASGKQQVIKELYERFFQKAFKKQ 850 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTD------- 222 ++ TP ++V D F + DP GT F Sbjct: 851 ADSLGIVYTPVEIVDFILRAADDVSRRHFGRGLSDEGVCILDPFAGTSTFTVRLLQSGLI 910 Query: 223 -----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 A + + + + T+ A R E +P KNI Sbjct: 911 RPEDLARKYANEIFVTEIMLLAYYVSAVNI-ETTYNALRAEAAQRGGEPEPEYVPFKNIA 969 Query: 278 QGSTL----------------SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKN 318 T + D ++ + + NPP+ + D Sbjct: 970 LADTFQIHEDGDIPDLNIFRENNDTIERQKAAPINVVIGNPPYSAGQKSANDLNANLKYP 1029 Query: 319 GELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 R S + + L+ + G A V + + +G G G Sbjct: 1030 SLDARIAETYAAKSTATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGGWI-DGNTGDG 1088 Query: 374 ESEIRRWLLENDLIEAIVALPTDL-----------FFRTNIATYLWILSNRKTEERRG 420 +R + E+ + L ++ F T + I K R+G Sbjct: 1089 ---VRLSMAEDFTDLYVFNLRGNMRNSDWRSEGGQIFGAGSQTTIAIFVAVKDSSRKG 1143 >gi|12837534|gb|AAK08958.1|AF306668_3 DNA methyltransferase BseMII [Geobacillus stearothermophilus] Length = 648 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 103/318 (32%), Gaps = 54/318 (16%) Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 F EL + + ++ +YE I + G + + F +P +VV+ L + Sbjct: 69 IMQFPQAELI-NPLDYDLLGRVYEEHIHKNG--TRKKSGQFYSPIEVVNYMIDSLKLTEV 125 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEP 249 K+ + CGTG FL + + + +G ++ Sbjct: 126 KDIKKKKFIDI-----ACGTGIFLLKITDTLISIYKNENLTTKDIVELVCNNIYGLDINS 180 Query: 250 ETHAVCVAGML------IRRLESDPRRDLSKNIQQGSTLSK--DLFTGKR---------- 291 + + ++ + + L NI +++ DL + Sbjct: 181 TSCLITKINLINLFIIRLGSDFLNYTDQLKLNIFNTNSIENRTDLLNKEELEIVEIKNRI 240 Query: 292 ------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F Y + NPP+ + + KE K + + G+ + + Sbjct: 241 GKYKDGFDYIVGNPPY-----LEAKRMPKELKEILKSNYPEMI----YGAFDLYIGFIAQ 291 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIA 404 + G +++L + A IR++L + I IV L D+F + ++ Sbjct: 292 CNRLVSDNGTVSLILPNKFTVAKYAIP----IRKYLNDKMTIIEIVDLSEMDIFHKADVY 347 Query: 405 TYLWILSNRKTEERRGKV 422 + I + + KV Sbjct: 348 P-IIISYKNTSPTKEHKV 364 >gi|326336113|ref|ZP_08202285.1| type IIS restriction endonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691622|gb|EGD33589.1| type IIS restriction endonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1151 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 76/255 (29%), Gaps = 61/255 (23%) Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDFDFSS 122 + E A F N + L + + ++ FS N A + F Sbjct: 333 EEEVIKLFAPIPFLNGGLF--ECLDKDKGNDGVRYHLDGFSRNDRRSQANGHYTHRAFIP 390 Query: 123 TIARLEKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SEVSE 172 +K L+ + +F+ E P+ V ++ N++E+L+ F + Sbjct: 391 NAVFFDKEKGLFPLLNRYHFTIEENSPNDVQVALDPELLGNVFENLLGAFNPETKESARK 450 Query: 173 GAEDFMTPRDVVHLATA------------LLLDPDDALFKESPGMIRTLY---------- 210 + F TP++VVH L + E G + TL+ Sbjct: 451 QSGSFYTPKEVVHYMVDESLKAYLKNHLPQLTYENLEELFEENGQLTTLWSTPLRTEVAQ 510 Query: 211 --------DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP CG+G F ++ + + + + Sbjct: 511 YLRKVKILDPACGSGAFPMGILSRMVQLLEKLNTNEETSLY--------------DLKLH 556 Query: 263 RLESDPRRDLSKNIQ 277 +E+ +NI Sbjct: 557 LIENCIYGVDIQNIA 571 >gi|288937410|ref|YP_003441469.1| N-6 DNA methylase [Klebsiella variicola At-22] gi|288892119|gb|ADC60437.1| N-6 DNA methylase [Klebsiella variicola At-22] Length = 554 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 41/244 (16%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + + + TP ++ + L + +P+ G GFL Sbjct: 1 MNKHSRTQKKTLGAYYTPLNLSKVLCEWALR----------KPNDYILEPSFGGCGFLEA 50 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 ++ + G G +++P L KNI+ L Sbjct: 51 SIERLKALGCKDTESQ---LFGVDIDPAAF---------HFLSEKIGNY--KNIKNQ-FL 95 Query: 283 SKD-------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 KD F F L NPP+ + + + F + Sbjct: 96 YKDFLEVMPNNFKTSGFDVVLGNPPYVSMHNMPEKLKINCFELLKKSYFSDDTIGKNASL 155 Query: 336 ML-FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 FL+H + L+ GGR+A VL SS L A + + + + +V L Sbjct: 156 WAFFLLHSLSFLKK----GGRSAWVLPSSLLHADYANAILNIFSQHF----HLVKVVKLH 207 Query: 395 TDLF 398 F Sbjct: 208 ERFF 211 >gi|172039720|ref|YP_001799434.1| hypothetical protein cur_0040 [Corynebacterium urealyticum DSM 7109] gi|171851024|emb|CAQ04000.1| hypothetical protein cu0040 [Corynebacterium urealyticum DSM 7109] Length = 156 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 M+++ E L+ R SE + A F PRD L +LL D F RT+Y P Sbjct: 1 MAHLSEDLMYRSSSENWQVAVGFDIPRDTSRLMVDVLLSCDGHGFYGQVPA-RTVYSPAA 59 Query: 215 GTGGFLTDAMNHVADCGSHHKI 236 GTGG L A + D + Sbjct: 60 GTGGILLVAKRAMEDLNPKIGV 81 >gi|80159697|ref|YP_398441.1| putative type I site-specific deoxyribonuclease, M subunit [Clostridium phage c-st] gi|78675287|dbj|BAE47709.1| putative type I site-specific deoxyribonuclease, M subunit [Clostridium phage c-st] Length = 560 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 72/265 (27%), Gaps = 49/265 (18%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E++++++ + F TP V + LL + D + G G Sbjct: 37 ENILKQYVGLS-KDNNSFFTPIPVCNFICNLLDI----------KENMKVADLSAGIGNM 85 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + K + + + ++ K Sbjct: 86 CIP----LIKEYGQLKDNITFYMYELDENNS----------LAGAKAWEDYKQVKYHGNC 131 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 TL+ D+ + + NPPF + + K + + Sbjct: 132 DTLNHDI-PENYYDCIIGNPPFVGSIPYMCEWNNNKGKIKKN---------------QIV 175 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +K G A+VL F G G ++R +L E + + L D F Sbjct: 176 DAFIDKSFKVCKENGYVALVLPKGFCFKGN---GTGKLREYLKERYSLLFCMELDQDTFA 232 Query: 400 R-----TNIATYLWILSNRKTEERR 419 T + T L I K + Sbjct: 233 NAGITGTGVGTVLCIFQKCKQTKPT 257 >gi|186687128|ref|YP_001870271.1| putative type II DNA modification enzyme [Nostoc punctiforme PCC 73102] gi|186469431|gb|ACC85230.1| putative type II DNA modification enzyme [Nostoc punctiforme PCC 73102] Length = 1291 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 65/245 (26%), Gaps = 60/245 (24%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLI------------RRFGSEVS---EGAEDF 177 L ++ + + + ++YE L+ F + + Sbjct: 397 LSLYLDKAQLRRVNYEYLDVEELGSVYESLLDFHPQVVQKQGKYEFALVFGSDRKTTGSY 456 Query: 178 MTPRDVVHLATALLLDPD-----------------DALFKESPGMIR---TLYDPTCGTG 217 TP +V L+P K + + DP CG+G Sbjct: 457 YTPPQLVQQLIKTALEPVIEDKLAQVRSQASTPSSPDELKHNLEKGLLSLKICDPACGSG 516 Query: 218 GFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 FL A V + +G +L P +C + I Sbjct: 517 HFLLAAARRVGKELAKVRTGEAEPGSEPLKFAMRDVIQNCIYGVDLNPLAVDLCKVALWI 576 Query: 262 RRLESD-PRRDLSKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 P L I+ G++L + + + + K ++ Sbjct: 577 EGFPGKLPLSFLDHRIKCGNSLVGVSDINCLDEGIPDEAYKAVTGDDKKLATQLKKRNKK 636 Query: 313 EKEHK 317 E+E+K Sbjct: 637 ERENK 641 >gi|212638328|ref|YP_002314848.1| adenine-specific DNA methylase [Anoxybacillus flavithermus WK1] gi|212559808|gb|ACJ32863.1| Adenine-specific DNA methylase [Anoxybacillus flavithermus WK1] Length = 324 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 80/243 (32%), Gaps = 38/243 (15%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +G ++++ P + + +L DP GTG +T +N + Sbjct: 79 KGMKEYVQPHHQMTPDAVAVFIGYLVDEFTKTYFSLSLLDPAIGTGNLMTAVLNQL---- 134 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +G + + + +++ + + +L K LF ++ Sbjct: 135 ----TNKKVKSYGADADDLLLKLAYVNANLQQHDI--------QLFHQDSL-KPLFI-EQ 180 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + + P G + + + H S LF+ + Sbjct: 181 VDVVVCDLPIGYYPDDENAKSFRLHATSGH----------SYAHYLFIEQSIRYTKE--- 227 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410 GG +V+ + LF ES+ L+ E I+ ++ LP +F A ++IL Sbjct: 228 -GGYVFLVIPN-TLFTSD----ESKQLHALIKEETFIQGLLQLPLSMFKNEKAAKSIFIL 281 Query: 411 SNR 413 + Sbjct: 282 QKK 284 >gi|291066989|gb|ADD74105.1| type I restriction-modification system methyltransferase subunit [Rickettsia felis] Length = 224 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 45/169 (26%) Query: 219 FLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 L + H+ D + + +G E+ + + M++ D Sbjct: 1 MLITSYKHIYDNLSLRTPENIQRLKKQTVYGGEITK-MYRIAKMNMILAG-------DGH 52 Query: 274 KNIQQGSTL-----------SKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHK 317 NI + ++ KD F K ++ +SN PFG+K + + + Sbjct: 53 SNIVRQNSYGTPDTIKQIDVIKDGFVTKENIKIKYDVVISNMPFGRKMKTEHAGL----- 107 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 G R + ++H N L N R +++ LF Sbjct: 108 YGFNTR---------SAEITGVLHCLNSLNNNENA--RLGLIVPEGILF 145 >gi|261885385|ref|ZP_06009424.1| restriction and modification enzyme CjeI [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 140 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 12/112 (10%) Query: 117 DFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 DF F + + A +L I K F + L ++++ N++E +++ + Sbjct: 9 DFSFIEVHNKTLFEQNAQVLKAIIKLFENLRLT-QNKTNQLLGNLFELFLQKGMKQ---D 64 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F TP + L P LF + + D CG G FL N Sbjct: 65 EGQFFTPIQICEFIVHSL--PLKMLFDKDIPK---VIDYACGAGHFLNTYAN 111 >gi|108763664|ref|YP_630054.1| putative restriction/modification enzyme [Myxococcus xanthus DK 1622] gi|108467544|gb|ABF92729.1| putative restriction/modification enzyme [Myxococcus xanthus DK 1622] Length = 1656 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 51/382 (13%), Positives = 96/382 (25%), Gaps = 57/382 (14%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS----- 156 + S S + + + RL+K + F + Sbjct: 815 AAENSMSRAMQGVLDAL----QEHRLDKE---ASTLEKFYASVKMRAEGVESAQGKQKIV 867 Query: 157 -NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTC 214 +Y+ R ++SE TP ++V + A F ++ G + DP Sbjct: 868 VELYDKFFRNAFPKMSERLGIVYTPVEIVDFILKSVDHLLRAEFGQTLGSEGVHVIDPFT 927 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDL 272 GTG F+T + H E+ + + + L Sbjct: 928 GTGTFITRLLQSGLIAEEDLPRKYAKEIHANEIALLAYYIAAINIEAAYHGL-VGGMYVP 986 Query: 273 SKNIQQGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + I T D + NPP+ + E + D Sbjct: 987 FEGICLTDTFQLYEKDDLISRVLVDNSARRRRQKKLDIRVVVGNPPYSEGQESENDNNAN 1046 Query: 315 EHKNGELGRFGPGLPKISDGSML---FLMHLANKLELPPNGGGR-AAIVLSSSPLFNGRA 370 R SD + + ++ G R ++ + Sbjct: 1047 LAYPLLDARIAATYVARSDAKLAKNNYNSYIRAIRWASDRVGNRGIVGFVTGAGFVESNT 1106 Query: 371 GSGESEIRRWLLENDLIEAIVAL--------------PTDLF-FRTNIATYLWILSNRKT 415 G +RR L E I L ++F + + L Sbjct: 1107 TDG---LRRSLKEEFSSIYIFHLRGNARSSGERRRMEGGNVFDMGSRAPVAISFLVKNPD 1163 Query: 416 EERRGKVQLINATDLWTSIRNE 437 + G +Q + D + + Sbjct: 1164 AKEHGSIQFYDVGDYLSRDQKL 1185 >gi|260871137|ref|YP_003237917.1| defense against restriction protein [Escherichia coli O111:H- str. 11128] gi|257767716|dbj|BAI39209.1| defense against restriction protein [Escherichia coli O111:H- str. 11128] Length = 2255 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 62/384 (16%), Positives = 119/384 (30%), Gaps = 74/384 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 89 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAI-STPNDSFDH 176 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ + L ++ ++ E + + Sbjct: 273 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319 Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 G+R RI+V ++ K + R E+ I W L S D++ ++ Sbjct: 320 EKGFRGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMRLING 379 Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553 W + I+++ K LK+ A+ Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403 >gi|331674465|ref|ZP_08375225.1| conserved hypothetical protein [Escherichia coli TA280] gi|331068559|gb|EGI39954.1| conserved hypothetical protein [Escherichia coli TA280] Length = 264 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 9/142 (6%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L + F TP V + + L ALF+ P + TL +P Sbjct: 121 DFLGSVFMQL-----ELGDKYRSQFFTPWSVASMMAQMQLGNVKALFENKPFI--TLSEP 173 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G + + + G + +++P + + + + + Sbjct: 174 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 231 Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294 S ++ L + Y Sbjct: 232 SLCNERRRVLLTPGHYLGNWSY 253 >gi|270602099|ref|ZP_06221566.1| HaeIV restriction/modification system [Haemophilus influenzae HK1212] gi|270318247|gb|EFA29439.1| HaeIV restriction/modification system [Haemophilus influenzae HK1212] Length = 224 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 50/175 (28%), Gaps = 20/175 (11%) Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHAVCVAGM 259 D CG G FLT+ + + +G E E V Sbjct: 6 TPARMKSIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSKVAKVSA 65 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + + NI L+++ F ++NPP+ + + Sbjct: 66 FMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGFLSTISD 116 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 E K + + F K + + G A IVL SS L NG Sbjct: 117 EDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAKGIAVIVLPSSILTNGN 168 >gi|57506015|ref|ZP_00371938.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Campylobacter upsaliensis RM3195] gi|57015623|gb|EAL52414.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Campylobacter upsaliensis RM3195] Length = 1321 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 47/298 (15%) Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F + L+K Y + + + + + ++YE+L + + E Sbjct: 791 KFGLQDELKNLKK---FYANVQKSAEYAQSDEAKQNL-IKSLYENLFKAAFKKTQEKLGI 846 Query: 177 FMTPRDVVHLAT-ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 TP ++V +L K +YDP GTG F+T + + + Sbjct: 847 VYTPIELVDFIIYSLEFVLKKHFDKSLSDKGVNIYDPFTGTGTFITRLIQSGL-LDKNLE 905 Query: 236 IPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLF------ 287 E+ + + + ++ + + + I + L D F Sbjct: 906 HKYKNELWANEITLLGYYIAQINITAIMHQRLKELDPKKDEFILLDNLLFTDTFNTYTQD 965 Query: 288 ---------------------------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 F + NPP+ + D + + Sbjct: 966 FKGFKGQGELNYKNAYFAKNYAKINELKKAEFKVIMGNPPYSNGQKDGNDENKNTNYPAL 1025 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSG 373 R ++ ++ ++ K+ G V + S + G + SG Sbjct: 1026 EARIKESYIARANTTLTRSLYDTYKMAIRYASDRIEKDGVIGFVTNGSFI-EGNSDSG 1082 >gi|317178970|dbj|BAJ56758.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30] Length = 1611 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 104/371 (28%), Gaps = 48/371 (12%) Query: 43 RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RL+ E + SNI + + + TS + +N Sbjct: 755 RLKDIFEKNPEIFHGFLDSLRGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 808 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 +++ I+ D L+ LY+ K + ++ N+Y Sbjct: 809 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 864 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218 + + SE TP +VV + T++DP GTG Sbjct: 865 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTGTGS 924 Query: 219 FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 F+ ++ + S K + ++ + + + + D KNI Sbjct: 925 FIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYITLINITQAAQSRDGSLKNFKNI 984 Query: 277 QQGSTLS-----------------------KDLFTGKRFHYCLSNPPF--GKKWEKDKDA 311 +L KD K + NPP+ G K + D + Sbjct: 985 ALTDSLDIYEEKNDKGVLPIFEDLKENKEIKDTLADKNIRVIIGNPPYSAGAKSQNDNNQ 1044 Query: 312 VEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 K + G K+ + L+ G V++ + Sbjct: 1045 NLSHPKLEKKVYEKYGKNSTAKVGATTRDTLIQSIYMASDLLKDRGVLGFVVNGGFI--- 1101 Query: 369 RAGSGESEIRR 379 + SG+ R+ Sbjct: 1102 DSKSGDG-FRK 1111 >gi|308181041|ref|YP_003925169.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046532|gb|ADN99075.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 316 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 40/255 (15%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 MTP + L L+ ++ D GTG LT +N + Sbjct: 74 DPNHQMTPDSIGLLTAYLIAK------LVGSTTDLSILDIAVGTGNLLTTVINQLQT--- 124 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 P + +G + + A+ M ++R + + +L + Sbjct: 125 --DRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVELFHQDA-----IDSLVMP-----KT 172 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + + P G D+ G + S + + + + G Sbjct: 173 TVVIGDLPVGYYPLDDRVQ-------------GFQTKATNGHSYIHHLMMEQAMAHLLPG 219 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G + L + +F + G + +W+ ++ ++ LPT+LF + +L Sbjct: 220 G--WGVFLVPTTIFQSQESQG---LLKWMSTAAYLQGLLNLPTNLFLDEKSRKSIVVLQK 274 Query: 413 R-KTEERRGKVQLIN 426 + + GKV L + Sbjct: 275 HGQRAHQAGKVLLGD 289 >gi|240948759|ref|ZP_04753131.1| hypothetical protein AM305_07728 [Actinobacillus minor NM305] gi|240296975|gb|EER47553.1| hypothetical protein AM305_07728 [Actinobacillus minor NM305] Length = 217 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 17/166 (10%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSE-----------VSEGAEDFMTPRDVVHLAT 188 + M I +L+ + + ++ TP + Sbjct: 46 IKSRYTDDEMYQFHQMGQILLNLLEQKPQDVLGQCYMKLQIANKQRGQCFTPISTGQVMA 105 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 +L+ P + + TL +PTCG+G + + G + L+ Q+++ Sbjct: 106 NMLIAPSE----INEKGYFTLNEPTCGSGALIISFCETLKSQGYN--PQQQLLVIAQDID 159 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 ++ +C + + + + + T L+ +R Y Sbjct: 160 LKSVQMCYVQLSLLGISAIIQHANPIANNVIDTYYTPLYLLQRNRY 205 >gi|300768056|ref|ZP_07077962.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494405|gb|EFK29567.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 349 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 40/255 (15%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 MTP + L L+ ++ D GTG LT +N + Sbjct: 107 DPNHQMTPDSIGLLTAYLIAK------LVGSTTDLSILDIAVGTGNLLTTVINQLQT--- 157 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 P + +G + + A+ M ++R + + +L + Sbjct: 158 --DRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVELFHQDA-----IDSLVMP-----KT 205 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + + P G D+ G + S + + + + G Sbjct: 206 TVVIGDLPVGYYPLDDRVQ-------------GFQTKATNGHSYIHHLMMEQAMAHLLPG 252 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G + L + +F + G + +W+ ++ ++ LPT+LF + +L Sbjct: 253 G--WGVFLVPTTIFQSQESQG---LLKWMSTAAYLQGLLNLPTNLFLDEKSRKSIVVLQK 307 Query: 413 R-KTEERRGKVQLIN 426 + + GKV L + Sbjct: 308 HGQRAHQAGKVLLGD 322 >gi|54298227|ref|YP_124596.1| hypothetical protein lpp2285 [Legionella pneumophila str. Paris] gi|53752012|emb|CAH13438.1| hypothetical protein lpp2285 [Legionella pneumophila str. Paris] Length = 287 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168 + F + +LE LL + F+ HPD + Y +I++ Sbjct: 12 LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67 Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 G +F + PR L L+ ++ D Sbjct: 68 LPIAYITGQREFWSLSLKVTPNVLIPRHETERLVELALELIPD------KENVSVLDLGT 121 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G K P+ + E + L Sbjct: 122 GSGAIALAL----------AKERPLWHIDACDFSKEALELARYNAKTLGLN--------- 162 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 NI + + K++H +SNPP+ + H RF P +S Sbjct: 163 NINFYHSCWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKQGDVRFEPTSALVSSQ 214 Query: 335 S-MLFLMHLANKLELPPNGGG 354 + L ++ G Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235 >gi|307564603|ref|ZP_07627140.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A] gi|307346688|gb|EFN91988.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A] Length = 1534 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 50/391 (12%), Positives = 109/391 (27%), Gaps = 51/391 (13%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ IR DP+ G G A G + + Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMG---VFAETFARQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + +R + ++ ++ SN PFG D Sbjct: 166 LHPHGKGNVFVRNEPFEAIGEIED--------------KDKYDLITSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYTRGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ +F T++ + L +L + +E + Q + Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEGIEQQFV 315 Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR-------- 476 + + K + + I ++ E + + YR Sbjct: 316 ETLSVPKEEGSSVVFKHNSLFAGDWKDIAHRIIATERTMGTDPYGKPAWEYRFDGSIGDM 375 Query: 477 --RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 I+ L + D+ + + + + + P E+ Sbjct: 376 AESIRTQLSLEVEQRFDRKLYETGIPMTEEERQKEAEKQLHKLGITVDLPKEDPKTDKEA 435 Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 ++ + + K + + Sbjct: 436 ENAYNLMPDSIRKQLPKLYSTEKELIGDKIA 466 >gi|170078909|ref|YP_001735547.1| DNA modification methyltransferase [Synechococcus sp. PCC 7002] gi|169886578|gb|ACB00292.1| DNA modification methyltransferase [Synechococcus sp. PCC 7002] Length = 914 Score = 48.0 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 70/253 (27%), Gaps = 57/253 (22%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP----RDVVH---------LATALLLDPDDALFKE 201 NI+E I ++ T R +V D K+ Sbjct: 301 FGNIFESAID---ADERHARGIHYTSEKDIRQIVRPTIADYWEGKIDEATTYEDLEKLKQ 357 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC---------------------GSHHKIPPIL 240 + DP CG+G FL A + I L Sbjct: 358 ELRE-YRVLDPACGSGNFLYVAYQELKRLERVLLNKIYERRKRFQGEVLQQEEIGIVTPL 416 Query: 241 VPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSK---------NIQQGSTLSKDLFTGK 290 G + P + M+I R++ D NI L D Sbjct: 417 QFFGMDTNPFAVQLARVTMMIARKIAIDKFGLTEPALPLDSLDQNIVCQDALFNDW---P 473 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + NPPF + + + ++ +F + D + F ++ Sbjct: 474 KADAIIGNPPF-LGGSRVRLELGDKYVERIFEKFSD----VKDK-VDFCVYWFRLAHENL 527 Query: 351 NGGGRAAIVLSSS 363 N GRA +V ++S Sbjct: 528 NKTGRAGLVGTNS 540 >gi|238854822|ref|ZP_04645152.1| adenine-specific DNA methylase [Lactobacillus jensenii 269-3] gi|260664110|ref|ZP_05864963.1| adenine-specific DNA methylase [Lactobacillus jensenii SJ-7A-US] gi|282933900|ref|ZP_06339248.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1] gi|238832612|gb|EEQ24919.1| adenine-specific DNA methylase [Lactobacillus jensenii 269-3] gi|260561996|gb|EEX27965.1| adenine-specific DNA methylase [Lactobacillus jensenii SJ-7A-US] gi|281301989|gb|EFA94243.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1] Length = 332 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 87/289 (30%), Gaps = 40/289 (13%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 ++ L + E TP V+ A++ D K ++ DP GTG Sbjct: 77 VFTLLTLKAMKEDGRNYSQMPTP-PVLATVVAMVWD------KLITKTELSVVDPAIGTG 129 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 L + H G + + + G + + D Sbjct: 130 SLL---YTVIDQLVQSHHSQNQYRLAGIDNDESMLDLADVGAHLNNYKIDL--------Y 178 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 +L + ++ +S+ P G ++K KN F + +G L Sbjct: 179 CQDSLEN--WLIEKPDVIVSDLPVG------YYPIDKNAKN-----FA---TQAKEGHSL 222 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 L + G A +++ +S L G E WL + ++A+V LP DL Sbjct: 223 AHELLVEQTIKNLAPAGYAFLLVPNSLL--GGKLGAEFMP--WLAKKVYLQAVVQLPNDL 278 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444 F L + N + V L L + +K Sbjct: 279 FQNPLNQKSLLVFQNHGENAQSRDVLLAKLGSLKEEKSLVDFNQKLNEW 327 >gi|83268881|gb|ABB99933.1| hypothetical protein pCT0012 [Listeria monocytogenes] Length = 1557 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 77/294 (26%), Gaps = 41/294 (13%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 E F+ LE LY+ + +++ +Y+ + +E Sbjct: 800 LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 855 Query: 175 EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232 TP +VV + D F K + DP GTG F+ + ++ + Sbjct: 856 GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDA 915 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQ----- 278 + H E+ ++ + + E + + + I Sbjct: 916 GEISLADITRKFMNELHANEIVLLSYYIAAINIEATFDEINGEEEGYVPFEGIVLTDTFE 975 Query: 279 ----GSTLSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR- 323 TL D F + + NPP+ D + R Sbjct: 976 STETEDTLDDDYFGTNDERLKRQQDVQITAIIGNPPYSVGQSNANDDNKNVQYQKLNNRI 1035 Query: 324 -----FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 + F+ G G V ++S + + A Sbjct: 1036 SETYALHSSATNKRNLYDDFIKAF-RWTSDRLKGNGIIGFVSNASFINSQSADG 1088 >gi|161522621|ref|YP_001585550.1| hypothetical protein Bmul_5588 [Burkholderia multivorans ATCC 17616] gi|189348517|ref|YP_001941713.1| hypothetical protein BMULJ_05916 [Burkholderia multivorans ATCC 17616] gi|160346174|gb|ABX19258.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] gi|189338655|dbj|BAG47723.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 333 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 7/89 (7%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ Y + ++GA F TP V L + + + + +P Sbjct: 114 DVLGETYMTM-----GIGNDGAGQFFTPYSVSRLMAGIAIGDRSEAVERD--GFMRMQEP 166 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV 241 CG GG + + + G +++ Sbjct: 167 ACGAGGMVIATADALLSIGQNYQQTLHAT 195 >gi|301311336|ref|ZP_07217263.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3] gi|300830422|gb|EFK61065.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3] Length = 255 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + A + + DP Sbjct: 85 DAFGDLFMAISSKIGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + V ML+ + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTVCNMLVHGCIGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF 292 + +L + F Sbjct: 180 ---VIHHDSLFPENFMDGWM 196 >gi|226322845|ref|ZP_03798363.1| hypothetical protein COPCOM_00617 [Coprococcus comes ATCC 27758] gi|225208826|gb|EEG91180.1| hypothetical protein COPCOM_00617 [Coprococcus comes ATCC 27758] Length = 1023 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 49/374 (13%), Positives = 106/374 (28%), Gaps = 72/374 (19%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 + V E+ + N E + +F+ T + LG ++ + I + Sbjct: 72 AEVSEEKESLEEINGIAEPIQAM---NFHITDD----ELGQGTSKEKFRANIMAI----- 119 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFGSE 169 + + + + A ++ +L + + +T + + + + Sbjct: 120 QLLKKCEEENRNATPKEQEILSRYVGWGGLADAFDETKAAWETEYLELKTVLTPEEYAAA 179 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + T V+ + + + + +P+ G G F ++ Sbjct: 180 RASTLNAHYTQPIVIESMYQV--------LENLGFIKGNILEPSMGVGNFFGMLPENL-- 229 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 +G EL+ + + NI Q K + Sbjct: 230 --------NQSKLYGVELDSISGRIGK------------LLYPDANI-QIKGFEKTDYPN 268 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F + N PFG D+ + FL ++L Sbjct: 269 DFFDVAIGNVPFGAYKVNDRQYDRYNFMIHDY----------------FLAKTIDQLRP- 311 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408 GG AA++ + + E+R++L E + + LP F Sbjct: 312 ---GGVAALITTKGTM-----DKASPEVRKYLAERADLLGAIRLPNTAFKANAGTEVSAD 363 Query: 409 ILSNRKTEERRGKV 422 IL +K E ++ Sbjct: 364 ILFFQKRESLTKEM 377 >gi|77406070|ref|ZP_00783145.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|77175303|gb|EAO78097.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1355 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + E+ +E+ ++ FY L+ R+ +E+ I Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163 + + ++ + A + LL K + G+ + S E L Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664 Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + + T ++ + + DP+ GTG F Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 H+ + +G EL+ T A+ + I+ Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 T+ F F +SN PF + R+ D + Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + K + GG+ AI+ G I + + E V LP F Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 T++ T + + + + + Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888 >gi|253567590|ref|ZP_04845001.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251841663|gb|EES69743.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 1000 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 39/165 (23%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP +V +L SP + D CG G F Sbjct: 60 EYAEAKKEYEMGQFFTPHEVCRDIVDML----------SPASSEMILDMCCGMGNFFNHL 109 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 NH +G +++ + AV +I++ Sbjct: 110 PNH-------------HNTYGFDIDGKAVAVAR------------YLYPDAHIEKCD--I 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + + +RF + NPPF K+ + + E + G+ Sbjct: 143 RQYYPEQRFDIIIGNPPFNLKF-DYRLSQEYYMEKAYDVLNPAGI 186 >gi|319788873|ref|YP_004090188.1| N-6 DNA methylase [Ruminococcus albus 7] gi|315450740|gb|ADU24302.1| N-6 DNA methylase [Ruminococcus albus 7] Length = 2936 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 73/252 (28%), Gaps = 58/252 (23%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + F TP +V D ++ + +P+ G G F Sbjct: 1395 EYKAARESTLTSFYTPPEVT--------DGVFQALRQLGFEGGNILEPSMGVGNFFAKMP 1446 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + D +G EL+ + + L + R ++ K Sbjct: 1447 DDIRDSSK---------LYGVELDSISGRIAQL------LNPEDRIQITG-------FEK 1484 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F F + N PFG + A +K F + + Sbjct: 1485 TRFNNNSFDVVIGNVPFG-DYRVSDKAYDKLGLKIHDY---------------FAVKSID 1528 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K++ GG AIV S F + + RR L E + V LP + F T Sbjct: 1529 KVKP----GGVVAIVTSK---FTMDKIN--DKARRHLAERCDLLGAVRLPNNAFKKNAGT 1579 Query: 402 NIATYLWILSNR 413 T + R Sbjct: 1580 ETTTDILFFQKR 1591 >gi|217032436|ref|ZP_03437930.1| hypothetical protein HPB128_164g36 [Helicobacter pylori B128] gi|216945915|gb|EEC24533.1| hypothetical protein HPB128_164g36 [Helicobacter pylori B128] Length = 551 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 28/232 (12%) Query: 132 LLYKICKNFSGIELH----PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 LL +I + + +++ + YE + + ++ E + TP VV Sbjct: 9 LLNEILSSINHVDMDSILKDLNDDKDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFI 68 Query: 188 TALLLDPDDALFKESP--------GMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232 L FK++P L D GTG FL +A + Sbjct: 69 INALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGIS 128 Query: 233 ---HHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDL 286 + +G E +A+ + + + + + I +TL + Sbjct: 129 TKEEKYQNLLKQFYGFEYLIAPYAIAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP- 187 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + Y +P F K+ ++ + E G ++G + Sbjct: 188 --SEIVAYRGLSPIFEKELSNAQEIKKDEKILIITGNPPYSGASSNEGLFEW 237 >gi|253729882|ref|ZP_04864047.1| superfamily II DNA/RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726329|gb|EES95058.1| superfamily II DNA/RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1572 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 15/195 (7%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 E F+ L LY+ ++ +++ +Y+ + + ++ Sbjct: 813 LEKAGFAKEQENLAP---LYESV-KMRAEDVEKAEDKQKIIITLYDKFFKTAFNSTTKKL 868 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 TP +VV + + F ++ + DP GTG F+ + ++ + Sbjct: 869 GIVFTPVEVVDFIVKSVDLTLERHFGKNLASESVHILDPFTGTGTFMVRTLEYLKEQMKE 928 Query: 234 HK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTLS 283 + H E+ ++ + + + + + I T Sbjct: 929 GEISLADITRKFTQELHANEIVLLSYYIAAINIEATFDDINGNEQGYTPFEGIVLTDTFE 988 Query: 284 KDLFTGKRFHYCLSN 298 + Y + N Sbjct: 989 TTVHEYSIDEYFIGN 1003 >gi|319945387|ref|ZP_08019648.1| type II DNA modification enzyme [Lautropia mirabilis ATCC 51599] gi|319741380|gb|EFV93806.1| type II DNA modification enzyme [Lautropia mirabilis ATCC 51599] Length = 1497 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 49/184 (26%) Query: 149 TVPDRVMSNIYEHLI----------RRF-----------GSEVSEGAEDFMTPRDVVHLA 187 + + ++YE L+ R F + + TP +V Sbjct: 423 NMGPEELGSVYESLLELVPTVDVHARSFDFVGRTDAASTAGNARKLTGSYYTPDSLVQEL 482 Query: 188 TALLLDPDDAL-------FKESPGMIRTLYDPTCGTGGFLTDAMNHV------------- 227 L+P E+ + + DP CG+G FL A + Sbjct: 483 IRSALEPVIEQRLASSPAAPEAALLAIRVIDPACGSGHFLLAAARRLAERLALLRSVASG 542 Query: 228 -------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQG 279 D + +G + P + + + E P L ++Q G Sbjct: 543 YEGAIRPKDYRHALREVVAHCIYGVDRNPMAVELARMALWLEGFEEGRPLDFLDHHLQVG 602 Query: 280 STLS 283 L Sbjct: 603 DALL 606 >gi|126732028|ref|ZP_01747831.1| type II restriction enzyme, methylase [Sagittula stellata E-37] gi|126707560|gb|EBA06623.1| type II restriction enzyme, methylase [Sagittula stellata E-37] Length = 1182 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 80/325 (24%), Gaps = 81/325 (24%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG----------------------M 205 + + TP VV + K + G Sbjct: 375 ESKRKRDGVYYTPEWVVERIVDETVGRRLTDLKAACGWPSEKKNKLPTIKAIDAYEAELR 434 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC---------------------GSHHKIPPILVPHG 244 + DP CG+G FL + ++ D + + +G Sbjct: 435 DIRIVDPACGSGAFLITTLAYLLDEWKALRDLRRQLGQKMAEEDWTDAAVREILRRNLYG 494 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTLSKDLFTG-------------- 289 ++ P + + + + SD N I+ G++L F Sbjct: 495 VDINPASVEITKLALWLHTARSDKPLSSLDNHIRDGNSLIGPEFYDGLAPYSADENERIN 554 Query: 290 --------------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 F + NPP+ K K + G G+ Sbjct: 555 AFDWRAAFPGVFERGGFDAVVGNPPYVKLQNFRKAHADMAAFLKRDPEDGGVYHSTQTGN 614 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN--GRAGSGESEIRRWLLENDLIEAIVAL 393 + K N GR + S N G G E R L I+ Sbjct: 615 FDLYLPFIEKGIQLLNDDGRLGYIAPSVWQMNEYGAGLRGMVETGRHLW--GWID----F 668 Query: 394 PT-DLFFRTNIATYLWILSNRKTEE 417 + +F + T L S +E Sbjct: 669 GSHQIFEEATVYTALMFFSKHPNDE 693 >gi|20091204|ref|NP_617279.1| hypothetical protein MA2372 [Methanosarcina acetivorans C2A] gi|19916317|gb|AAM05759.1| predicted protein [Methanosarcina acetivorans C2A] Length = 1161 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 70/277 (25%), Gaps = 58/277 (20%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDN 110 + + + + + + F N + + L + N L Y+ + Sbjct: 103 IKVFTSTDPNKPEPDLLTNALKLDFLNLNRDLVLDLKAENKDEELYKYLILKLCNYLNKI 162 Query: 111 AKAIFEDFDFSSTIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYEHLIR---- 164 +FE + L LL + + + I D ++ IY+ I Sbjct: 163 MPFLFEKIE--DYTELLFPDKLLHTGSVLHDLNSIIPDEDWQEVEIIGWIYQDYIAPKKD 220 Query: 165 ----------RFGSEVSEGAEDFMTPR----------------------DVVHLATALLL 192 + E TP +V L + Sbjct: 221 KVFADLKKNIKISKENIPAVTQLFTPHWIVRYLVENSLGRLWMLNRPESSIVDLMEYYVK 280 Query: 193 DPDD--ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------LVP 242 K + + DP CG+G L A + + P Sbjct: 281 PEQQETDFLKINSPEELKICDPACGSGHMLVYAFDLLYAIYEEEGYTPSEIPEIILTHNL 340 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPR---RDLSKNI 276 G E++ + + ++ D + + NI Sbjct: 341 FGIEIDKRAGELAGFALTMKARGKDRHFFKKQVQPNI 377 >gi|146344269|ref|YP_001202125.1| hypothetical protein pQBR0379 [Pseudomonas fluorescens SBW25] gi|146188081|emb|CAM96411.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 268 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 18/158 (11%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + + ++ ++ D ++ +Y L + F TP + Sbjct: 62 KPQDQPKFGELLQHLVQ---ALDLQAGDLLGELYMRL-----GVSNADMGQFFTPPSIST 113 Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 + + L +D + + TL +P G+G + N + + G +++ Sbjct: 114 VLSKLAMDTEHIQAQVKRRGFVTLSEPASGSGAMVIGFANSMLELGINYQQHLHATLIDL 173 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++ A +L + + G+TL+ Sbjct: 174 DIRAVHMAFIQLSLL----------HIPAVVVHGNTLT 201 >gi|313126057|ref|YP_004036327.1| type i restriction-modification system methyltransferase subunit [Halogeometricum borinquense DSM 11551] gi|312292422|gb|ADQ66882.1| type I restriction-modification system methyltransferase subunit [Halogeometricum borinquense DSM 11551] Length = 702 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 85/276 (30%), Gaps = 41/276 (14%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 + ++YE LI TP ++ L + DD T+ DP Sbjct: 139 DIGHLYETLI---AGNHRRVLGQHRTPTELAELMRTWAVSGDD-----------TVLDPG 184 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 G G A +I +G + P + I + RR Sbjct: 185 MGAG-------ELSAPFHPDWEISTDPGRVNGVDRSPLAALMGRVAQTISGQRHETRRTD 237 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + L++D L NPP+ + +K + E +PK S Sbjct: 238 FFELDPAD-LTQD------VDAILCNPPYTRHESLSSAYKDKLNAQAENQT-ELEIPKTS 289 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-IV 391 + L + G RAA++ L G ++++LL I+A ++ Sbjct: 290 ----PLYAYFYYHLGRFLDTGDRAAVLTPHHFLSRGFGEP----LKQFLLREFDIKALLL 341 Query: 392 ALPTD--LFFRTNIATYLWILSNRKTEERRGKVQLI 425 P + F + + +L E G + I Sbjct: 342 DNPKNESKFETAQTTSMVVLLEATDDEADVGATRFI 377 >gi|86741640|ref|YP_482040.1| putative DNA methylase [Frankia sp. CcI3] gi|86568502|gb|ABD12311.1| putative DNA methylase [Frankia sp. CcI3] Length = 1239 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 27/165 (16%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + +FS R + ++Y+ L + + TP V L Sbjct: 185 GALVHDFSDP-----ASSTRFLGDLYQDL----SEQARKDYALLQTPEFVEEFILGRTLA 235 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVP---HG 244 P F + + DP CG+G FL A + + + G K+ V HG Sbjct: 236 PAIDEFGLAE---VRMIDPACGSGHFLLGAFDLLLDRWQKQEHGIDVKVHVERVLGQVHG 292 Query: 245 QELEPETHAVCVAGMLIRRL------ESDPRRDLSKNIQQGSTLS 283 ++ P A+ ++I L I G +L Sbjct: 293 VDINPFAAAIARFRLVIAALAVCGITRLVDAPVWRIRIAIGDSLL 337 >gi|322411801|gb|EFY02709.1| SNF2 family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1826 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 69/276 (25%), Gaps = 59/276 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T ++ + + DP+ GTG F Sbjct: 496 KEYSDMKQSSLTAYYTDPHLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 547 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 H+ + +G EL+ T A+ + +I+ Sbjct: 548 PKHLRENSE---------LYGVELDTITGAIAK------------HLHPNSHIEV-KGFE 585 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F LSN PF + R+ D + + Sbjct: 586 TVAFNDNSFDLVLSNVPFA-------------NMRIADSRY--------DKPYMIHDYFV 624 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K + GG+ AI+ G I + + E V LP F Sbjct: 625 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDTAFKAIAG 679 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 TN+ T + + + + + Sbjct: 680 TNVTTDMLFFQKHMDKGYVADDLAFSGSIRYDKDDR 715 >gi|261496171|ref|ZP_05992577.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308123|gb|EEY09420.1| type I site-specific deoxyribonuclease methyltransferase subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 506 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 64/214 (29%), Gaps = 56/214 (26%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 E+ V+ +E+LI + + TPR V+ + +L P Sbjct: 298 EVKLFNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------DP 344 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---------LEPETHAV 254 T+ D G+ GF ++ HV + + E ++ + A+ Sbjct: 345 KPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPEQTDYVKEKVFAI 404 Query: 255 ---CVAGMLIRRLESDPRRDLSKNIQQGSTL-------------SKDLF----------- 287 A + R L D N+ +TL D++ Sbjct: 405 DFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEDFTKEEEWNDVYGEGWKKLRKLR 463 Query: 288 ------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 +F ++NPPF ++ + E Sbjct: 464 KTKNENRDFQFDVLMANPPFAGDIKETRILARYE 497 >gi|262202558|ref|YP_003273766.1| type III restriction protein res subunit [Gordonia bronchialis DSM 43247] gi|262085905|gb|ACY21873.1| type III restriction protein res subunit [Gordonia bronchialis DSM 43247] Length = 1632 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 69/282 (24%), Gaps = 35/282 (12%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 +D + S + LEK Y+ E+ +V++ +YE R + ++ Sbjct: 825 DTLDDANLESETSGLEK---FYQSV-RIRASEVTSADGKQQVIAELYERFFRVAFRKQAD 880 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V F + DP GTG FLT + Sbjct: 881 ALGIVYTPTEIVDFILRAADHVSRDTFGRGLTDDGVHILDPFTGTGTFLTRLLQSGLILP 940 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESDPRRDLS-KNIQQGSTLS-- 283 H E+ + + + + + + + I T Sbjct: 941 HDLGRKYRNELHANEIMLLAYYIAAVNVETTYHALTTPDGETGTYEPFEGIVLADTFQIT 1000 Query: 284 --KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGR--- 323 D F + + NPP+ + D R Sbjct: 1001 EDDDSMDSIMFPQNNLRIEKQLAAPINVIVGNPPYSVGQDSANDMNANIKYPTLDARIAD 1060 Query: 324 -FGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSS 363 F + S G A V + Sbjct: 1061 TFAARSTGTNKNSLYDSYYRAYRWATDRIGDTGIVAFVSNGG 1102 >gi|259907149|ref|YP_002647505.1| hypothetical protein EpC_04680 [Erwinia pyrifoliae Ep1/96] gi|259909633|ref|YP_002649989.1| putative phage-related protein [Erwinia pyrifoliae Ep1/96] gi|224962771|emb|CAX54226.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96] gi|224965255|emb|CAX56787.1| putative phage-related protein [Erwinia pyrifoliae Ep1/96] gi|261863678|gb|ACY01289.1| unknown [Erwinia pyrifoliae] gi|283476953|emb|CAY72837.1| hypothetical protein EPYR_00489 [Erwinia pyrifoliae DSM 12163] gi|283479712|emb|CAY75628.1| hypothetical protein EPYR_03248 [Erwinia pyrifoliae DSM 12163] Length = 241 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 59/169 (34%), Gaps = 10/169 (5%) Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + +++ +K + + + + + + P + ++ L + F Sbjct: 62 KYMRIVSKYQKPDV-TNMAQLLAHVVSGLEESPGDFLGRVFMLL-----ELGDKYRGQFF 115 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP V + L L + F++ P + TL +PTCG G + + + G Sbjct: 116 TPWSVGVMMAQLQLGNVEEQFRDKPFI--TLSEPTCGAGCMALAFASVLREVGF--PPHR 171 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + +++P + + + + + + + ++ L + Sbjct: 172 RMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGNALSDERRRVLYTPMH 220 >gi|150004142|ref|YP_001298886.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC 8482] gi|149932566|gb|ABR39264.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC 8482] Length = 255 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + A + + DP Sbjct: 85 DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + V ML+ + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTVCNMLVHGCIGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF 292 + +L + F Sbjct: 180 ---VIHHDSLFPENFMDGWM 196 >gi|55822816|ref|YP_141257.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus CNRZ1066] gi|55738801|gb|AAV62442.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus CNRZ1066] Length = 75 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 + RF G+ + FL H + GR AI L LF G A E I Sbjct: 13 DDPRFREYGIAPKTKAEDSFLSHCLYHTKES----GRVAITLPQGVLFRGAA---EGRIP 65 Query: 379 RWLLENDLIE 388 + L++ IE Sbjct: 66 KALIDKHQIE 75 >gi|46907813|ref|YP_014202.1| hypothetical protein LMOf2365_1604 [Listeria monocytogenes serotype 4b str. F2365] gi|217964270|ref|YP_002349948.1| N-6 DNA methylase [Listeria monocytogenes HCC23] gi|226224183|ref|YP_002758290.1| site specific DNA-methyltransferase [Listeria monocytogenes Clip81459] gi|254824359|ref|ZP_05229360.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852205|ref|ZP_05241553.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254931522|ref|ZP_05264881.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|290894449|ref|ZP_06557408.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|300765992|ref|ZP_07075963.1| hypothetical protein LMHG_11690 [Listeria monocytogenes FSL N1-017] gi|46881082|gb|AAT04379.1| conserved domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|217333540|gb|ACK39334.1| N-6 DNA methylase [Listeria monocytogenes HCC23] gi|225876645|emb|CAS05354.1| Putative site specific DNA-methyltransferase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605511|gb|EEW18119.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290555987|gb|EFD89542.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293583076|gb|EFF95108.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593593|gb|EFG01354.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513310|gb|EFK40386.1| hypothetical protein LMHG_11690 [Listeria monocytogenes FSL N1-017] gi|307571163|emb|CAR84342.1| adenine-specific methyltransferase [Listeria monocytogenes L99] gi|328465080|gb|EGF36354.1| site specific DNA-methyltransferase [Listeria monocytogenes 1816] gi|332312024|gb|EGJ25119.1| N-6 DNA methylase domain protein [Listeria monocytogenes str. Scott A] Length = 332 Score = 48.0 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 46/259 (17%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP + + LL ++ DP CGT LT +N + K Sbjct: 95 HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 143 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRF 292 + G +++ ++ + + ++ L +D Sbjct: 144 GDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL--------LHQDGLANLLVDPV 190 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 +S+ P G + D++A E E F LF+ + Sbjct: 191 DVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFLFIEQGMRYTKP---- 236 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GG ++ + + +++ +N IE I+ LP LF + IL Sbjct: 237 GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILQK 292 Query: 413 RKTE-ERRGKVQLINATDL 430 + + +V L N + L Sbjct: 293 ADVDVKPPKEVLLANLSSL 311 >gi|197294487|ref|YP_001799028.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171853814|emb|CAM11755.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] Length = 225 Score = 48.0 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 83/287 (28%), Gaps = 74/287 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP V +L + + DP G G Sbjct: 1 MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRVL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E T N+ Sbjct: 52 LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395 +L + IVL + F S S+ + L + I +I++LP Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178 Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434 D+F + + I + K + IN+++ + Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225 >gi|282851934|ref|ZP_06261294.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|282556943|gb|EFB62545.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] Length = 480 Score = 48.0 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 33/166 (19%) Query: 118 FDFSSTIARLEKAGL--------LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 D + ++ +A ++ + F I+ D+ +M ++Y + ++ Sbjct: 300 IDKDKIVGKMIQAERASITKQIFIFLYKEIFLQIDA--DSGSLDIMGSMYSEFL-KYALG 356 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 +TP + L + + + D G+G FL +M + D Sbjct: 357 DGGSLGKVLTPPYITDLMAKAINVSMNDR----------VMDLATGSGAFLVSSMKLMID 406 Query: 230 ------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + G E + + + + + M++R Sbjct: 407 DANDTYGINSELANKKIRQIKKSQLLGVEYDAKMYTLAASNMILRG 452 >gi|260222775|emb|CBA32671.1| hypothetical protein Csp_D33310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 396 Score = 48.0 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 82/260 (31%), Gaps = 43/260 (16%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R S + F+TP + +L +LL P ++ + G G L Sbjct: 1 MRNRYSSAKQELGQFLTPAPIANLLASLL-----------PPGGESILELGAGAGALLEA 49 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + L+ E A +A +LI K I++ Sbjct: 50 VSSRMPHLDVTAVEKDVA------LKRELRARGLASLLIGG-----DATSPKTIRR---- 94 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 L F Y + NPP+ + E + G L FL Sbjct: 95 ---LAERAPFDYIVGNPPYAMGVSRKASIKLLEQYGLYNAQRGVRL------DTYFLAQS 145 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 + + A + PLF+ + R+ LL+ IV LP D F Sbjct: 146 ISMMATTG-----AGAFILPMPLFSDG---SYATFRQALLQRFSNITIVELPIDTFGNAE 197 Query: 403 IATYLWILSNRKTEERRGKV 422 ++T + S + +R KV Sbjct: 198 VSTAICSFSGLEGRRKRVKV 217 >gi|157419748|gb|ABV55437.1| SNF2-related helicase [Streptococcus dysgalactiae subsp. equisimilis] Length = 2278 Score = 48.0 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + E+ +E+ ++ FY L+ R+ +E+ I Sbjct: 557 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 614 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163 + + ++ + A + LL K + G+ + S E L Sbjct: 615 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 668 Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + + T ++ + + DP+ GTG F Sbjct: 669 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 720 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 H+ + +G EL+ T A+ + I+ Sbjct: 721 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 761 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 T+ F F +SN PF + R+ D + Sbjct: 762 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 797 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + K + GG+ AI+ G I + + E V LP F Sbjct: 798 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 852 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 T++ T + + + + + Sbjct: 853 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 892 >gi|47093444|ref|ZP_00231208.1| conserved domain protein [Listeria monocytogenes str. 4b H7858] gi|47018172|gb|EAL08941.1| conserved domain protein [Listeria monocytogenes str. 4b H7858] Length = 321 Score = 48.0 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 46/259 (17%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP + + LL ++ DP CGT LT +N + K Sbjct: 84 HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 132 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRF 292 + G +++ ++ + + ++ L +D Sbjct: 133 GDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL--------LHQDGLANLLVDPV 179 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 +S+ P G + D++A E E F LF+ + Sbjct: 180 DVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFLFIEQGMRYTKP---- 225 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GG ++ + + +++ +N IE I+ LP LF + IL Sbjct: 226 GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILQK 281 Query: 413 RKTE-ERRGKVQLINATDL 430 + + +V L N + L Sbjct: 282 ADVDVKPPKEVLLANLSSL 300 >gi|313623593|gb|EFR93765.1| adenine-specific methyltransferase [Listeria innocua FSL J1-023] Length = 220 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 40/227 (17%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 ++ DP CGT LT MN + K + G +++ ++ + + Sbjct: 5 SILDPACGTANLLTTVMNQL-----ELKGDVEVHASGVDVDDLLISLA-----LVGADLQ 54 Query: 268 PRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 ++ L +D +S+ P G + D++A E E F Sbjct: 55 RQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEGHSF 105 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 LF+ + GG ++ + + +++ +N Sbjct: 106 ---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFIKKN 148 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430 IE I+ LP LF + IL + + +V L N + L Sbjct: 149 GHIEGIIKLPETLFKSEQARKSILILRKADVDVKPPKEVLLANLSSL 195 >gi|87124661|ref|ZP_01080509.1| hypothetical protein RS9917_00527 [Synechococcus sp. RS9917] gi|86167540|gb|EAQ68799.1| hypothetical protein RS9917_00527 [Synechococcus sp. RS9917] Length = 1379 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 31/146 (21%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA 223 +E + TPR + L P + P + + DP G+G FL ++ Sbjct: 523 TEERRRSGSHYTPRSLTRPIVEEALRPWMERCEYRPKASQILDLKICDPAMGSGAFLVES 582 Query: 224 MNHVADCGSHH--------------------------KIPPILVPHGQELEPETHAVCVA 257 ++A+ ++ +G + P + Sbjct: 583 CRYLAELLEQAWSREGLPDALKPGGHALGEEPLIYARRLIAQSCLYGVDKNPFAVNLARL 642 Query: 258 GMLIRRLESDPRRDLSKN-IQQGSTL 282 + + L D + ++ G +L Sbjct: 643 SLWLVSLSKDAPFTFVDHALKCGDSL 668 >gi|76797967|ref|ZP_00780227.1| SNF2 family protein [Streptococcus agalactiae 18RS21] gi|76586691|gb|EAO63189.1| SNF2 family protein [Streptococcus agalactiae 18RS21] Length = 2271 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + E+ +E+ ++ FY L+ R+ +E+ I Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163 + + ++ + A + LL K + G+ + S E L Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664 Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + + T ++ + + DP+ GTG F Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 H+ + +G EL+ T A+ + I+ Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 T+ F F +SN PF + R+ D + Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + K + GG+ AI+ G I + + E V LP F Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 T++ T + + + + + Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888 >gi|148543794|ref|YP_001271164.1| adenine-specific DNA methylase-like protein [Lactobacillus reuteri DSM 20016] gi|184153197|ref|YP_001841538.1| putative modification methylase [Lactobacillus reuteri JCM 1112] gi|227363226|ref|ZP_03847358.1| DNA methyltransferase [Lactobacillus reuteri MM2-3] gi|325682166|ref|ZP_08161684.1| adenine-specific methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530828|gb|ABQ82827.1| Adenine-specific DNA methylase-like protein [Lactobacillus reuteri DSM 20016] gi|183224541|dbj|BAG25058.1| putative modification methylase [Lactobacillus reuteri JCM 1112] gi|227071682|gb|EEI09973.1| DNA methyltransferase [Lactobacillus reuteri MM2-3] gi|324978810|gb|EGC15759.1| adenine-specific methyltransferase [Lactobacillus reuteri MM4-1A] Length = 277 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 44/267 (16%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + +IR+ + + TP + + L+ I+T++DP GT Sbjct: 26 FLKVIRKDAIQANHQM----TPDTIGLIMAFLI------EKVTKIKEIKTVFDPAVGTAN 75 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 LT MN + +V +G + + + V ++ L + Sbjct: 76 LLTTVMNQLK-----VNGDKDIVGYGIDNDEDMLEVASVSTELQHLNVKLYHQDAVT--- 127 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + +S+ P G E+ R G S L Sbjct: 128 -------ALDIPQCDLAISDLPIGY-------YPLDENAKNYQTRAKEGH---SYVHHLL 170 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + N L+ G + L S LF + +W+ ++ ++ LP +LF Sbjct: 171 IEQSMNYLKP-----GAFGVFLVPSSLFQTKESQS---FVKWIQSVAYLQGLINLPAELF 222 Query: 399 FRTNIATYLWILSNRKTE-ERRGKVQL 424 N + +L + + ++ KV L Sbjct: 223 ANPNAQKSILLLQRQGGDSKQAAKVLL 249 >gi|126658645|ref|ZP_01729791.1| N-6 DNA methylase [Cyanothece sp. CCY0110] gi|126620082|gb|EAZ90805.1| N-6 DNA methylase [Cyanothece sp. CCY0110] Length = 512 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 76/253 (30%), Gaps = 44/253 (17%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + F TP V + + + DP G G Sbjct: 7 ISNIPINYRKEYGQFFTPSLVAQMMAKWVTENHPEKI----------LDPAFGLG----- 51 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + S K+ E++ + ++++ I L Sbjct: 52 ---IFYEEISKLKLQYQWHFTAYEIDNNILN------YLHNIQNNNNLT----IFNQDYL 98 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 D + + NPP+ + + ++G+ G S+ + +FL+ Sbjct: 99 ESD---MDYYDAIICNPPYLRFQKFKNRHDILPKIEQQIGKKLGGY---SNIASIFLIKA 152 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400 +L N GR A +L G EI++ L+EN L++ I+ D+F Sbjct: 153 LQQL----NLNGRLAFILPFEFFNTGYG----KEIKKTLIENYLLKQIIIFANEKDIFPD 204 Query: 401 TNIATYLWILSNR 413 + + N Sbjct: 205 ATTTICILLCQND 217 >gi|323127133|gb|ADX24430.1| SNF2 family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 2274 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + E+ +E+ ++ FY L+ R+ +E+ I Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163 + + ++ + A + LL K + G+ + S E L Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664 Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + + T ++ + + DP+ GTG F Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 H+ + +G EL+ T A+ + I+ Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 T+ F F +SN PF + R+ D + Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + K + GG+ AI+ G I + + E V LP F Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 T++ T + + + + + Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888 >gi|240147421|ref|ZP_04746022.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257200385|gb|EEU98669.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 1560 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 52/409 (12%), Positives = 104/409 (25%), Gaps = 77/409 (18%) Query: 54 AVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 V + + + + +G ++ + + F N + Sbjct: 1092 EVIAEPEPQNEAEAPKEQPQIDKSGAVNFHIAPET-EKSDGKGFAAK-----EKFRQNVE 1145 Query: 113 AI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFG 167 AI E + + IA E+ +L K + +T + + + Sbjct: 1146 AIRTLEKIEGENRIATPEEQEILAKYVGWGGLADAFDETKTNWASEYQELKSLLSAEEYD 1205 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 S T ++ + + +P G G F + Sbjct: 1206 SARESTLNAHYTSPVIIKAIY--------DAMERMGFSKGNILEPAMGIGNFFGMLPEKM 1257 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + +G EL+ T + + I K + Sbjct: 1258 QE----------SRLYGVELDGITGRIAR----------QLYPNADVKITG---FEKTDY 1294 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 F + N PFG+ D+ + + F +K+ Sbjct: 1295 PNDFFDVAIGNVPFGQYKVADRAYDKHNFLIHDY----------------FFAKALDKVR 1338 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404 GG A V S + E+R++L + + + LP F T + Sbjct: 1339 P----GGVVAFVTSKGTMDKKSP-----EVRKYLAQRAELLGAIRLPNTAFKENAGTEVT 1389 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 + + L R +V I + +G D I+ Sbjct: 1390 SDILFLKK------RDRVIDIEPDWVHLCENEDGIAMNQYFADHPEMIM 1432 >gi|317152124|ref|YP_004120172.1| type III restriction protein res subunit [Desulfovibrio aespoeensis Aspo-2] gi|316942375|gb|ADU61426.1| type III restriction protein res subunit [Desulfovibrio aespoeensis Aspo-2] Length = 1613 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 89/312 (28%), Gaps = 43/312 (13%) Query: 105 ASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 S + + + + LEK Y K + + + V+ +Y+ Sbjct: 807 NPISQAMQKVLDTLEGHHLHKEADTLEK---FYDSVKLRAEGIDNAEGKQKIVV-ELYDK 862 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFL 220 R ++E TP +VV + D + F ++ G + DP GTG F+ Sbjct: 863 FFRNAFPRMTERLGIVYTPVEVVDFIIHSVNDVLKSEFGQTLGSEGVHIIDPFTGTGTFI 922 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRRDLSKNIQ 277 T + H E+ + + + + + + + I Sbjct: 923 TRLLQSGLISPEQLPHKYKHEIHANEIVLLAYYIAAINIEAVYHTLMGGKGKYEPFEGIC 982 Query: 278 QGST------------LSKD------LFTGKRFHYCLSNPPFGKKWEKDKDAVE------ 313 T L +D + NPP+ + D D Sbjct: 983 LTDTFQMYERKDMISELLEDNSERRMRQKKLDIRVIIGNPPYSSGQKSDNDDAANVKYAG 1042 Query: 314 -KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 E + G P+ S + G V ++ L NG+A Sbjct: 1043 LDEEIQNTYVKASTGNPRSLYDSYI---RAFRWASSRIKDSGIIGFVSNAGFL-NGKAAD 1098 Query: 373 GESEIRRWLLEN 384 G +R+ L+ Sbjct: 1099 G---MRKCLVSE 1107 >gi|3806109|gb|AAC69195.1| HsdM-like protein [Staphylococcus aureus] Length = 41 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 12/26 (46%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDF 31 A L +W A DL G+ ++F Sbjct: 16 QQQAELHKKLWSIANDLRGNMDASEF 41 >gi|34762952|ref|ZP_00143931.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887375|gb|EAA24466.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 556 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 86/223 (38%), Gaps = 36/223 (16%) Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 ++ + V +E+++ F + + S+ ++ H+ L G+ ++ ++ Sbjct: 162 YKNNIKEVTEEYRSKLENNFKIPNKILKNASLEWIFHIL--LINQLKEKGKGISLVKTNI 219 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 L+ IR++ +EN IE+I+ LP ++ L + S + K++ Sbjct: 220 LYKPEN----KNIRKYFVENGYIESIIYLPKNMLIDYPFPLALIVFSKK-----NKKIKF 270 Query: 425 INATDLWTSIR-----------------NEGKKRRIINDDQRRQILDIYVSRENGKFS-- 465 I+A + + + II D +I+D+ +++N K S Sbjct: 271 IDAYKFCKIEKFKIEFIDNYFKNPKISEIKEQNINIIIDTNVEKIIDLINNQKNIKESFS 330 Query: 466 -RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 ++ D Y + +F + L + + +I ++ + Sbjct: 331 KKIEDIVEKDYNLVVTE-----NFEILVDILKKFKNEIKFKDI 368 >gi|254673274|emb|CBA08342.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 660 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 35/139 (25%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250 DP CG G FL A + + + HG E++ Sbjct: 88 QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147 Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295 + M ++ + + R + + I ++L + Y Sbjct: 148 AVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAEIIHANSLRTPW---QAADYI 204 Query: 296 LSNPPFGKKWEKDKDAVEK 314 +PPF + K+ Sbjct: 205 FGDPPFIGSTYQTKEQKND 223 >gi|254670013|emb|CBA04764.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 660 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 35/139 (25%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250 DP CG G FL A + + + HG E++ Sbjct: 88 QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147 Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295 + M ++ + + R + + I ++L + Y Sbjct: 148 AVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAEIIHANSLRTPW---QAADYI 204 Query: 296 LSNPPFGKKWEKDKDAVEK 314 +PPF + K+ Sbjct: 205 FGDPPFIGSTYQTKEQKND 223 >gi|329955480|ref|ZP_08296388.1| hypothetical protein HMPREF9445_01235 [Bacteroides clarus YIT 12056] gi|328525883|gb|EGF52907.1| hypothetical protein HMPREF9445_01235 [Bacteroides clarus YIT 12056] Length = 239 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP + L + + + DPTCG+G L H Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 P G+++ + V ML+ + +L FT + Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328 + P G + E + E GRF + Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231 >gi|218264244|ref|ZP_03478116.1| hypothetical protein PRABACTJOHN_03806 [Parabacteroides johnsonii DSM 18315] gi|218222199|gb|EEC94849.1| hypothetical protein PRABACTJOHN_03806 [Parabacteroides johnsonii DSM 18315] Length = 239 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP + L + + + DPTCG+G L H Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 P G+++ + V ML+ + +L FT + Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328 + P G + E + E GRF + Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231 >gi|198275467|ref|ZP_03207998.1| hypothetical protein BACPLE_01632 [Bacteroides plebeius DSM 17135] gi|198271096|gb|EDY95366.1| hypothetical protein BACPLE_01632 [Bacteroides plebeius DSM 17135] Length = 239 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP + L + + + DPTCG+G L H Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 P G+++ + V ML+ + +L FT + Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328 + P G + E + E GRF + Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231 >gi|308061998|gb|ADO03886.1| hypothetical protein HPCU_03620 [Helicobacter pylori Cuz20] Length = 1295 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 88/307 (28%), Gaps = 35/307 (11%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ I+ D L+ LY+ K + ++ Sbjct: 492 GDNIKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMRAKSQKSQQELIK 547 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 548 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTG 607 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ ++ + S K + ++ + + + + D Sbjct: 608 TGSFIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQSRDGSLKNF 667 Query: 274 KNIQQGSTL--------------SKDLFTGKR---------FHYCLSNPPF--GKKWEKD 308 KNI +L +DL K + NPP+ G K E D Sbjct: 668 KNIALTDSLDIYEEKNDKGVLPILEDLKENKEIKSTIEKRNIRVIIGNPPYSAGSKSEND 727 Query: 309 KDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + K + G K+ + L+ G V++ S + Sbjct: 728 NNQNLSHPKLEKRVYEKYGKNSTAKVGATTRDTLIQSIYMASELLKDRGVLGFVVNGSFI 787 Query: 366 FNGRAGS 372 + A Sbjct: 788 DSKSADG 794 >gi|302205704|gb|ADL10046.1| DNA or RNA helicase of superfamily II [Corynebacterium pseudotuberculosis C231] gi|308275940|gb|ADO25839.1| DNA or RNA helicase [Corynebacterium pseudotuberculosis I19] Length = 1648 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 94/356 (26%), Gaps = 57/356 (16%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 E + LEK Y E+ + +V+ +YE ++ + ++ Sbjct: 824 DALEAAHLDTETESLEK---FYDSV-RVRASEVSSASGKQQVIKELYERFFQKAFKKQAD 879 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTD--------- 222 TP ++V D F + DP GT F Sbjct: 880 SLGIVYTPVEIVDFILRAADDVSRRHFGRGLSDEGVCILDPFAGTSTFTVRLLQSGLIRP 939 Query: 223 ---AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 A + + + + T+ A R E +P KNI Sbjct: 940 EDLARKYANEIFVTEIMLLAYYVSAVNI-ETTYNALRAEAAQRGGEPEPEYVPFKNIALA 998 Query: 280 STL----------------SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 T + D ++ + + NPP+ + D Sbjct: 999 DTFQIHEDGDIPDLNIFRENNDTIERQKAAPINVVIGNPPYSAGQKSANDLNANLKYPSL 1058 Query: 321 LGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 R S + + L+ + G A V + + +G G G Sbjct: 1059 DARIAETYAAKSTATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGGWI-DGNTGDG-- 1115 Query: 376 EIRRWLLENDLIEAIVALPTDL-----------FFRTNIATYLWILSNRKTEERRG 420 +R + E+ + L ++ F T + I K R+G Sbjct: 1116 -VRLSMAEDFTDLYVFNLRGNMRNSDWRSEGGQIFGAGSQTTIAIFVAVKDSSRKG 1170 >gi|237717755|ref|ZP_04548236.1| predicted protein [Bacteroides sp. 2_2_4] gi|229452984|gb|EEO58775.1| predicted protein [Bacteroides sp. 2_2_4] Length = 1000 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 52/216 (24%) Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + E F TP +V +L SP + D CG G F Sbjct: 60 EYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 NH+ + +G +++ + +V +I++ Sbjct: 107 -NHLPNL---------HNAYGFDIDGKAVSVAR------------YLYPDAHIEKCD--L 142 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + +RF + NPPF K+ K + E G+ LM + Sbjct: 143 RQYYPEQRFDIVIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPAGI----------LMIIV 191 Query: 344 --NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + ++ R A + +S+ F G+ S Sbjct: 192 PGSFMQSGFWEKTRIAGI-NSNFSFVGQTKLAPSAF 226 >gi|18138464|ref|NP_542568.1| putative methyltransferase-endonuclease [Halorubrum phage HF2] gi|32453891|ref|NP_861654.1| putative methyltransferase-endonuclease [Halovirus HF1] gi|18000405|gb|AAL54988.1| putative methyltransferase-endonuclease [Halorubrum phage HF2] gi|32346459|gb|AAO61365.1| putative methyltransferase-endonuclease [Halovirus HF1] Length = 1288 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 21/155 (13%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 FS ++ + + ++ ++Y+H F E + +F TP+ V+ + Sbjct: 377 FSVLKFDFEEIEGDLLGDLYQH---YFDPETRKALGEFYTPQPVIDYIMDGVDYNVGVS- 432 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 L DP+CG+G FL +A+N + + P H +L H Sbjct: 433 ------GERLIDPSCGSGTFLVEAVNRYIEDVKRYNDDPDWEEHLTDLCTTPH------- 479 Query: 260 LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKR 291 I L+ P L I+ + +D R Sbjct: 480 -IVGLDIHPFAVLMAQIRFMVAILPEYRDAKEDNR 513 >gi|328952687|ref|YP_004370021.1| DNA methyltransferase [Desulfobacca acetoxidans DSM 11109] gi|328453011|gb|AEB08840.1| DNA methyltransferase [Desulfobacca acetoxidans DSM 11109] Length = 1091 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 16/200 (8%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + I D I LL ++ + + + YE + + Sbjct: 263 ADTLNILGDPKARDEIKTPVD--LLERVIGAIDPAAFLKKSKGEPWL-YFYEDFLAAYDP 319 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP---GMIRTLYDPTCGTGGFLTDAMN 225 ++ + + TP +VV L+ + F+ DP GTG ++ A+ Sbjct: 320 KMRKERGVYYTPVEVVQAQVRLVAELLTERFEADYSFVSPDVVTLDPGAGTGTYILAALQ 379 Query: 226 HVADCGSHHKIP---------PILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKN 275 H K P H E+ +AV + L E + + Sbjct: 380 HGLQQIEEAKGPGMRAKAAAQAARNIHAFEILVGPYAVAHLRLTQEILAEGGQLPEDGVH 439 Query: 276 IQQGSTLSKDLFTGKRFHYC 295 + TL L F + Sbjct: 440 VYLTDTLESPLKPLPHFPFM 459 >gi|126667783|ref|ZP_01738750.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17] gi|126627731|gb|EAZ98361.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17] Length = 2567 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 70/226 (30%), Gaps = 49/226 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ P + + +P+ GT F + EL+P Sbjct: 895 IIQPMWEALDRFNIPLNRVLEPSAGTLQF--------KSFMPKELESKVTHTTAVELDPI 946 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 T + + D S K F F +SN PFG D Sbjct: 947 TARIAAM------IHPDATVISSG-------FEKTTFPDGFFDCVISNVPFG-----DYK 988 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + +H + F + +K+ GG + + SS L Sbjct: 989 IFDPQHPL-----------RKESIHNAFFLKGLDKVRP----GGVVSFLTSSYVL----- 1028 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 S ++++R+ +++ + V LPT F T++ T + L + Sbjct: 1029 DSKDTDVRKEIMDRAHVVGAVRLPTGTFDKTTGTSVVTDILFLQKK 1074 >gi|22537429|ref|NP_688280.1| SNF2 family protein [Streptococcus agalactiae 2603V/R] gi|22534305|gb|AAN00153.1|AE014250_16 SNF2 family protein [Streptococcus agalactiae 2603V/R] Length = 2274 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + E+ +E+ ++ FY L+ R+ +E+ I Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163 + + ++ + A + LL K + G+ + S E L Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664 Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + + T ++ + + DP+ GTG F Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 H+ + +G EL+ T A+ + I+ Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 T+ F F +SN PF + R+ D + Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + K + GG+ AI+ G I + + E V LP F Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848 Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 T++ T + + + + + Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888 >gi|322511339|gb|ADX06648.1| putative Eco57I-like restriction endonuclease [Organic Lake phycodnavirus] Length = 1156 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 8/144 (5%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + + TP +++ L + +DP G G F Sbjct: 947 QSEKKQFGEVFTPMYLINEMLDNLDKHYIKEHGRSIFTEPSFKWFDPASGMGNFPVAVYL 1006 Query: 226 HVADCGSHHKIPPILVPHGQELE-PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + H + + I + N+ +G+TL Sbjct: 1007 KLMEGLKHQIPNDEDRKKHIIENMLYMSELNKKNVFITHQIFNMNNQYKLNMYEGNTLEL 1066 Query: 285 D-----LFTGKRFHYCLSNPPFGK 303 D RF L NPP+ K Sbjct: 1067 DIVSVWGIQNNRFDVILGNPPYNK 1090 >gi|320195302|gb|EFW69930.1| Type I restriction-modification system, DNA-methyltransferase subunit M [Escherichia coli WV_060327] Length = 58 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54 A G + +++ V+L L + + E R Sbjct: 21 DTANQFRGSVESSEYKHVVLSLVLQKLISDKFEARRKK 58 >gi|294783677|ref|ZP_06749001.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294480555|gb|EFG28332.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 746 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 11/139 (7%) Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 LF + + E G+A ++ S L++ +IR + ++ + IEAI+ LP Sbjct: 376 EWLFYIKMI---EEQLKDEGKALSLVESEILYDYNNN---EKIREYFIKKEYIEAIILLP 429 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454 + F N + L + S K++ ++A++ + + + KK I+ D +I++ Sbjct: 430 ERIMFDINASLALIVFSKG-----NKKIRFVDASNFGKAKKIKEKKITILRDSDVDEIIN 484 Query: 455 IYVSRENGKFSRMLDYRTF 473 + + N K + + + F Sbjct: 485 LLNNDTNSKVAISKEIKDF 503 >gi|315656096|ref|ZP_07908987.1| methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493098|gb|EFU82698.1| methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 755 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 54/225 (24%), Gaps = 60/225 (26%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--------DALF 199 + + I+E + E T + +H L D + Sbjct: 299 SQISPTIFGGIFESTL---NPETRRAGGMHYTSPESIHKVIDPLFLDDLKAELRAINDAE 355 Query: 200 KESPGM-------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239 +P DP G+G FLT+ + Sbjct: 356 GLTPRQRTNRYRAFHERLCKMRFLDPASGSGNFLTETYLQLRHLEDEVLSRLNAGQTAFS 415 Query: 240 -------------LVPHGQELEPETHAVC---------VAG----MLIRRLESDPRRDLS 273 +G E+ V A ML+ + D S Sbjct: 416 LAEVGASVTRVSLDQFYGIEINDFAVKVSEAALWISRLKANGETEMLLSLGDDDFPLRES 475 Query: 274 KNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 +I Q + L+ D + Y L NPPF D+ Sbjct: 476 AHIVQANALTLDWNTVLPADQCSYVLGNPPFIGYSRLDESQKVDR 520 >gi|304391126|ref|ZP_07373078.1| methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326009|gb|EFL93255.1| methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 947 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 54/225 (24%), Gaps = 60/225 (26%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--------DALF 199 + + I+E + E T + +H L D + Sbjct: 299 SQISPTIFGGIFESTL---NPETRRAGGMHYTSPESIHKVIDPLFLDDLKAELRAINDAE 355 Query: 200 KESPGM-------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239 +P DP G+G FLT+ + Sbjct: 356 GLTPRQRTNRYRAFHERLCKMRFLDPASGSGNFLTETYLQLRHLEDEVLSRLNAGQTAFS 415 Query: 240 -------------LVPHGQELEPETHAVC---------VAG----MLIRRLESDPRRDLS 273 +G E+ V A ML+ + D S Sbjct: 416 LAEVGASVTRVSLDQFYGIEINDFAVKVSEAALWISRLKANGETEMLLSLGDDDFPLRES 475 Query: 274 KNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 +I Q + L+ D + Y L NPPF D+ Sbjct: 476 AHIVQANALTLDWNTVLPADQCSYVLGNPPFIGYSRLDESQKVDR 520 >gi|189459439|ref|ZP_03008224.1| hypothetical protein BACCOP_00062 [Bacteroides coprocola DSM 17136] gi|189433896|gb|EDV02881.1| hypothetical protein BACCOP_00062 [Bacteroides coprocola DSM 17136] Length = 1002 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 53/380 (13%), Positives = 101/380 (26%), Gaps = 114/380 (30%) Query: 136 ICKNFSGIELHPDTVPDR-----VMSNIYEHLIR------------RFGSEVSEGAEDFM 178 + ++F +P +S+IY+ + +E + Sbjct: 291 VFESFLANLYYPSPYRFDVIPLKTLSDIYDLFLGYQLVVDGSSVTDELKAEFKKSNGAVT 350 Query: 179 TPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---- 233 TP +V+ + A + D CG+G FL A +++ Sbjct: 351 TPEALVNQVIECTIPFNTIANLTIEQIFNLKIIDIACGSGVFLVGAYDYLIKQIEKKLER 410 Query: 234 ---------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 + +G ++ PE V + +R +++ D Sbjct: 411 NQDCDAELYADLEYPVLNINGRRKLINNCIYGVDINPEAVEVSKMSLCLRLIDNYSPEDF 470 Query: 273 S--------------KNIQQGSTL-----------------------SKDL-------FT 288 NI+ G+TL + D F Sbjct: 471 DAVGLLGSQILKGIGANIRCGNTLVGTDIEQHFPAIADNMRELQETNAFDWESSFPTVFE 530 Query: 289 GKRFHYCLSNPP------FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 F + + NPP + +++ + + + G+ +P F+ Sbjct: 531 NGGFDFVVGNPPYVEVKNYNVGLPHMAAYIKRFYSSSKNGKIDLAIP--------FIEKG 582 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNG-RAGSGESEIRRWLLE--NDLIEAIVALPTDLFF 399 N L N GR ++ G E R LL +D E DLF Sbjct: 583 INLL----NANGRLGFIVQKRFFKTEYGKGIRELLTTRRLLNGVHDYEET------DLFA 632 Query: 400 RTNIATYLWILSNRKTEERR 419 + + N + Sbjct: 633 GRLTYVAIVVCDNNRENNNH 652 >gi|260593522|ref|ZP_05858980.1| putative DNA methylase [Prevotella veroralis F0319] gi|260534510|gb|EEX17127.1| putative DNA methylase [Prevotella veroralis F0319] Length = 1514 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 40/242 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ IR DP+ G G F A G + + Sbjct: 111 IVSAISDTLTSVNVPIRRCLDPSAGMGAF---AETFARQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + +R + +L ++ SN PFG D Sbjct: 166 LHPYGKGNVFVRNEPFEAIGELED--------------KDKYDLITSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 IYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGILAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ +F T++ + L +L + +E + Q + Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315 Query: 426 NA 427 A Sbjct: 316 EA 317 >gi|222476117|ref|YP_002564638.1| hypothetical protein Hlac_3219 [Halorubrum lacusprofundi ATCC 49239] gi|222454488|gb|ACM58752.1| hypothetical protein Hlac_3219 [Halorubrum lacusprofundi ATCC 49239] Length = 1298 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 39/329 (11%), Positives = 84/329 (25%), Gaps = 90/329 (27%) Query: 38 FTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 ++ LE ++ + Y ++ + F++ Y N S Sbjct: 303 LIFIKFLEDKGIVRPDLLQSILDTYEDGLYTDSLYQQFIQPLFYDVLNKRPDKRSPQIQD 362 Query: 95 NTRNNLESYIAS--FSDNA-------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 Y+ F + + F++ DF + +L I + Sbjct: 363 IELFADIPYLNGGLFRPSIQHDGSDDREQFKEADFD------VRNSILRSILELLESYSF 416 Query: 146 HPDTV----PDRVMSNIYEHLIRRF---GSEVSEGAEDFMTPRDVVHLATALLLDP-DDA 197 D V+ N++E I ++ ++ + TP+++ + + P Sbjct: 417 STDGSVTDLDPSVLGNVFEKTINYITADNADQNKELGAYYTPKEITRFSAERTVRPALFD 476 Query: 198 LFKE-------------------------------------SPGMIRTLYDPTCGTGGFL 220 K+ + DP CG+G FL Sbjct: 477 RLKQVVIEERGWPEAELENYDTVYELIESLPASMDLITTLLGEVDNFRVVDPACGSGHFL 536 Query: 221 TDAMNHVADCGSH--------------HKIPPILVPHGQELEPETHAVCVAGMLIRRL-- 264 T + + K +G ++ + + + Sbjct: 537 TSVLEEIVGVRRALWAHTDSYPHEQALKKTTVQHNIYGVDIVGPAVEIAKLRCWLSVIAE 596 Query: 265 -------ESDPRRDLSKNI----QQGSTL 282 D NI +QG++L Sbjct: 597 LQQEDLESMDQEELALPNIAFNLRQGNSL 625 >gi|197294217|ref|YP_001798758.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|197294356|ref|YP_001798897.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|197294405|ref|YP_001798946.1| Putative N6 adenine-specific DNA methyltransferase fragment [Candidatus Phytoplasma australiense] gi|197294818|ref|YP_001799359.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171853544|emb|CAM11404.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171853683|emb|CAM11566.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171853732|emb|CAM11655.1| Putative N6 adenine-specific DNA methyltransferase fragment [Candidatus Phytoplasma australiense] gi|171854145|emb|CAM12137.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] Length = 225 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 74/287 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP V +L + DP G G Sbjct: 1 MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E T N+ Sbjct: 52 LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395 +L + IVL + F S S+ + L + I +I++LP Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178 Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434 D+F + + I + K + IN+++ + Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225 >gi|260205309|ref|ZP_05772800.1| hypothetical protein MtubK8_13497 [Mycobacterium tuberculosis K85] gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tuberculosis K85] gi|289539134|gb|EFD43712.1| helicase [Mycobacterium tuberculosis K85] Length = 1606 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAMMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 VNDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|222083249|ref|YP_002542652.1| helicase SNF2 family [Agrobacterium vitis S4] gi|221738629|gb|ACM39467.1| helicase SNF2 family [Agrobacterium vitis S4] Length = 1697 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 69/274 (25%), Gaps = 60/274 (21%) Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + E + + S TP ++ + + Sbjct: 145 DDLGSSLETAVSESDYSSLSRCTQYAHFTPEFIIRAIWS--------GLLRMGWRGGRVL 196 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P GTG F + G EL+P T + Sbjct: 197 EPGIGTGLFPALMPE---------EYRDTSYVTGIELDPVTARIAR------------LL 235 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I G DL + + NPPF + + Sbjct: 236 QPKSRIITGDFARTDL--SAIYDLAVGNPPFSDRSVRSDRQYRALGLRLHDY-------- 285 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ + L+ G AA V S + ++ R + ++ + A Sbjct: 286 -------FIARSIDLLKP----GALAAFVTSHGTM-----DKADTTAREHIAKSADLIAA 329 Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 + LP F T++ + RK E G Sbjct: 330 IRLPEGSFRRDAGTDVVVDILFFRKRKAGEPEGD 363 >gi|197294766|ref|YP_001799307.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171854093|emb|CAM12073.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] Length = 225 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 83/286 (29%), Gaps = 72/286 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R ++ TP V +L + DP G G Sbjct: 1 MYRVDRNNFFKNKKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E T N+ Sbjct: 52 LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTRKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTD 396 +L + IVL + F +++++L E I +I++LP D Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLNQSLNSKQLQKFLNQEYPEISSIISLPKD 179 Query: 397 LFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434 +F + + I + K + IN+++ + Sbjct: 180 VFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225 >gi|313126295|ref|YP_004036565.1| type i restriction-modification system methyltransferase subunit [Halogeometricum borinquense DSM 11551] gi|312292660|gb|ADQ67120.1| type I restriction-modification system methyltransferase subunit [Halogeometricum borinquense DSM 11551] Length = 1250 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 10/104 (9%) Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 F+ + V ++ ++Y+ R F E + +F TP+ V+ + Sbjct: 379 FNVLRFDFQDVEGDLLGDLYQ---RYFDPETRKALGEFYTPQPVIDYIMDGVGYERGVS- 434 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 L DP+CG+G FL +A+ + + P H Sbjct: 435 ------NERLIDPSCGSGTFLVEAVERYITDVENFEDNPDWEEH 472 >gi|94265472|ref|ZP_01289222.1| hypothetical protein MldDRAFT_4858 [delta proteobacterium MLMS-1] gi|93454014|gb|EAT04355.1| hypothetical protein MldDRAFT_4858 [delta proteobacterium MLMS-1] Length = 204 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILVPHGQELEPETHAVCVAGMLIRRL 264 L DP GTGGFL A +H+ + + G ++ E +C + + L Sbjct: 117 KLSDPAYGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHGL 176 >gi|315656027|ref|ZP_07908925.1| methylase [Mobiluncus curtisii ATCC 51333] gi|315490091|gb|EFU79718.1| methylase [Mobiluncus curtisii ATCC 51333] Length = 951 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 50/211 (23%), Gaps = 60/211 (28%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL----------DPDDA 197 + + I+E + E T +H L D Sbjct: 299 SQISPTIFGGIFESTL---NPETRRAGGMHYTDPANIHKVIDPLFLDDLKAELQAINDAE 355 Query: 198 LFKESPGMIR-----------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239 R DP G+G FLT+ + Sbjct: 356 GLTPRQRTNRYRAFHERLCSLRFLDPASGSGNFLTETYLQLRHLEDEVLSRLNAGQTAFS 415 Query: 240 -------------LVPHGQELEPETHAVC---------VAG----MLIRRLESDPRRDLS 273 +G E+ V A ML+ + D S Sbjct: 416 LAEAGASVTRVSLDQFYGIEINDFAVKVAEAALWISRLKANGETAMLLALGDDDFPLRES 475 Query: 274 KNIQQGSTLSKDL---FTGKRFHYCLSNPPF 301 +I Q + L+ D + +Y L NPPF Sbjct: 476 AHIVQANALTVDWNTVLPADQCNYVLGNPPF 506 >gi|329666726|gb|AEB92674.1| putative restriction endonuclease [Lactobacillus johnsonii DPC 6026] Length = 1562 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 67/240 (27%), Gaps = 31/240 (12%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 + S + I F E+ Y K + + ++ +Y + Sbjct: 783 NAVSKSMNDIISAFKMFGFAKEQEQLKPFYDSVKLRASGIDNIQGKQTFII-QLYNSFFK 841 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDA 223 V+E TP +VV + + F K + DP GTG F+T Sbjct: 842 TAFPRVTESMGIVFTPVEVVDFIIHSVDWALNKYFGKSLASKNVHILDPFTGTGTFITRT 901 Query: 224 MNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRRDLS 273 + ++ K + H E+ ++ + + D Sbjct: 902 LYYLKQQMDEGKITYDDILRKYMHELHANEIVLLSYYIAAINIEAVFDEVNGPDRGYKPF 961 Query: 274 KNIQQGS---------TLSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEK 314 I TL D+F +SNPP+ + + + D E Sbjct: 962 DGIVLTDTFESTERESTLDDDMFGTNNERLRKQQETPITAIISNPPYSGRQKNENDENEN 1021 >gi|189459596|ref|ZP_03008381.1| hypothetical protein BACCOP_00222 [Bacteroides coprocola DSM 17136] gi|189433678|gb|EDV02663.1| hypothetical protein BACCOP_00222 [Bacteroides coprocola DSM 17136] Length = 615 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 123/413 (29%), Gaps = 78/413 (18%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN--- 99 ++ +E + E+ + SN SE L+T N Sbjct: 1 MIDGLIELENDLIAEECEKYKSSNR---------------ISEQDLNTETVAALAENVHS 45 Query: 100 --LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-- 155 + S I +F K + + + S + L Y + F E+ P + + Sbjct: 46 FLINSLIYTFLYQ-KKLLDSVEISGSYGFLPDGE--YSLYTQFPA-EVIPSLCEELHIVF 101 Query: 156 ---------SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 +Y R+ T V + L DA G Sbjct: 102 LNAVIERKNGLVY----RKKSKHNLIDKGAVYTRSYVAYEIVKNTLSRCDA------GAD 151 Query: 207 RTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 ++ D CGTG F ++ + + + + +++P A+ L R E Sbjct: 152 VSVLDFACGTGRFYDCIVDILDKEYAIPPEKSILNNIFAVDIDPVAVAITRMKALARLKE 211 Query: 266 SDPRRDLS--KNIQQGSTL--SKDLFTGKR--------------FHYCLSNPPFGKKWEK 307 NI + + L +F+ + F +SNPP+ Sbjct: 212 PSVSDIEKICGNIIRRNALIQENIMFSDECPLKNSDFEGKVNGGFDVIVSNPPYLVLKPD 271 Query: 308 DKDAVEKEHKN----GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K + R +G + K+ G ++ S Sbjct: 272 KKKISGNKADRILMWVSWFRTSGAYHYALEGMLNLYQLSIEKMIRMLKRNGYLGVICP-S 330 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIV----ALPTDLFFRTNIATYLWILSN 412 LF A +++R++LLE + + I ++P LF +T ++ L Sbjct: 331 TLF---ADLSTTKLRKFLLEKNKVCEIKYFRESIP--LFDNVTQSTNIFYLQR 378 >gi|281358272|ref|ZP_06244755.1| type III restriction protein res subunit [Victivallis vadensis ATCC BAA-548] gi|281315362|gb|EFA99392.1| type III restriction protein res subunit [Victivallis vadensis ATCC BAA-548] Length = 1610 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 66/451 (14%), Positives = 130/451 (28%), Gaps = 98/451 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + + + TP ++ L+ + G + L GTG F+ A Sbjct: 109 EEYQTAQNSILDSYYTPEYIIDFMWDLVRQE----LEIKSGKVAELG---AGTGNFIGFA 161 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 E++ + + +I+ +L Sbjct: 162 P-----------FQNAYEFTAVEVDKISGNIAKT------------LYPESDIRIA-SLE 197 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 +++ + N PFG+ D++ N F+ Sbjct: 198 TVKLP-EQYDLVIGNVPFGRFAPYDRNYRSYNAWNLHNY---------------FIARAL 241 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 + L+ G G A ++ SSS + + + R L++ LP + F T I Sbjct: 242 DCLK----GNGHAVLLTSSSTMDKPGSMPLVTNGRAGLVKAY------RLPNNTFAGTEI 291 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463 + IL E G +Q ++ D D R + ++ Y ++ Sbjct: 292 VADILILKKNYRETLSGNLQWVDTAD----------------DTGRIE-VNCYFAQHPEH 334 Query: 464 FSRMLDYRTFGYRRIKVLRPL----RMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519 L Y RI L + D + A + + L + + Sbjct: 335 VFGKLSNTGKMYGRINTPTVLPDGKSLKEHFDIARKEFMPALPEVPENTDLFGNALPEAT 394 Query: 520 KPMMQQIYPYGWAES-FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578 P ++ I + KE K+ ++ + I+ G + + D Sbjct: 395 TPKVEVISYAERTDIPEEKEPPKNCREYSIFSTLDA--VYQVIDGMGHR------LKDRK 446 Query: 579 GEWIPDTNLTEYENV--------PYLESIQD 601 GE + L E + V E I+ Sbjct: 447 GENLT---LKETQKVHSFVKIKNALNELIEA 474 >gi|229814944|ref|ZP_04445282.1| hypothetical protein COLINT_01987 [Collinsella intestinalis DSM 13280] gi|229809431|gb|EEP45195.1| hypothetical protein COLINT_01987 [Collinsella intestinalis DSM 13280] Length = 851 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 PE + ++ NI++ + + + F ++NPP+ Sbjct: 420 SPSPEDLGALKSELMRNLSGDLFVSHTQTNIERAANCCE--TLSRTFDVVVANPPYMGSG 477 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + K K + SD +F+ + N+ + G A I S+S + Sbjct: 478 -NFNPFMSKWSKENYSS-------EKSDLCYMFIERIKNQRKHL----GYAGIAASNSWM 525 Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 F S + RR +LE I +V L F + +IL+NR RRG Sbjct: 526 F----LSSSEQSRRKVLEECNIITLVQLAQGGFKGIAAQVFAFILANRCDAPRRG 576 Score = 38.8 bits (89), Expect = 3.5, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 31/144 (21%) Query: 129 KAGLLYKICKNFSGIELH-------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L+ + + + + + + R+ +E A TP Sbjct: 191 EHDVLFHLVADIPEETWGDVEALGWMYQFYNSELKDAFFKSKRKAAAEDLAPATQLFTPD 250 Query: 182 DVVHLATA-------LLLDP-----------------DDALFKESPGMIRTLYDPTCGTG 217 +V +L +P + + T DP CG+G Sbjct: 251 WIVRYMVENSLGRLWMLNNPGSRLREDMAYFIEPDAQHEDFIRIEGPEDITFCDPACGSG 310 Query: 218 GFLTDAMNHVADCGSHHKIPPILV 241 L A + + + V Sbjct: 311 HILVYAFSLLFKMYAERGYRERDV 334 >gi|83719870|ref|YP_440674.1| hypothetical protein BTH_I0114 [Burkholderia thailandensis E264] gi|83653695|gb|ABC37758.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 1231 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 29/197 (14%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + +F+ E + + ++Y+ L E TP V L Sbjct: 168 GSLVHDFADPEWNTRF-----LGDLYQDL----SEAARERYALLQTPEFVESFILDRTLT 218 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQ 245 P ++ L DPTCG+G FL A +A + + G Sbjct: 219 PALDVYTLEE---VDLIDPTCGSGHFLLGAFERLAPRWLRKRPENVNLALQEALGRIAGI 275 Query: 246 ELEPETHAVCVAGMLIRRLES------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +L P A+ +LI L+ D +++ G +L + Y + Sbjct: 276 DLNPYAVAIARFRLLIAALKMASVKKLRLAPDFHLHVETGDSLL---HGFDQRDYAGAQV 332 Query: 300 PFGKKWEKDKDAVEKEH 316 ++ A +H Sbjct: 333 SLALDTPQENLAAVADH 349 >gi|138896441|ref|YP_001126894.1| hypothetical protein GTNG_2804 [Geobacillus thermodenitrificans NG80-2] gi|134267954|gb|ABO68149.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 1586 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 86/300 (28%), Gaps = 34/300 (11%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 I E+ LEK Y+ + + + +V+ +Y+ R ++ Sbjct: 788 VLDILEEHALWKETESLEK---FYESVRTRAS-GIDNAEGKQKVIVELYDKFFRTAFPKM 843 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVAD 229 ++ TP +VV D F + DP GTG F+ + Sbjct: 844 TDRLGIVYTPVEVVDFILKSADDVLQEEFGMRLSDEGVHILDPFTGTGTFIVRLLQSGLI 903 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPRRDLSKNIQQG--- 279 H E+ + + + + E P L+ + G Sbjct: 904 RPEDLARKYRNELHANEIVLLAYYIAAINIEEAYHRLSGQDYEPFPGIVLTDTFRLGEDK 963 Query: 280 STLSKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 TL++ +F + + NPP+ + D + + R Sbjct: 964 DTLAETMFPENNERIIRQNRQEIRVIVGNPPYSAGQGSENDNNQNLKYDRLDQRIADTYA 1023 Query: 330 KISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 S + L+ ++ G A V + S + + +R+ L E Sbjct: 1024 ASSKAVLKKGLYDSYIRAIRWASDRIGDQGVIAFVTNGSFIDSNTTDG----LRKCLAEE 1079 >gi|28378841|ref|NP_785733.1| type I restriction-modification system methyltransferase subunit (putative) [Lactobacillus plantarum WCFS1] gi|254557047|ref|YP_003063464.1| type I restriction-modification system methyltransferase subunit (putative) [Lactobacillus plantarum JDM1] gi|28271678|emb|CAD64584.1| type I restriction-modification system methyltransferase subunit (putative) [Lactobacillus plantarum WCFS1] gi|254045974|gb|ACT62767.1| type I restriction-modification system methyltransferase subunit (putative) [Lactobacillus plantarum JDM1] Length = 336 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 80/255 (31%), Gaps = 40/255 (15%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 MTP + L L+ ++ D GTG LT +N + Sbjct: 94 DPNHQMTPDSIGLLTAYLIAK------LVGSTTDLSILDIAVGTGNLLTTVINQLQT--- 144 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 P + +G + + A+ M ++R + + D + Sbjct: 145 --DRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVELFHQDAI----------DPLVMPKT 192 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + + P G D+ G + S + + + + G Sbjct: 193 TVVIGDLPVGYYPLDDRVQ-------------GFQTKATNGHSYIHHLMMEQAMAHLLPG 239 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 G + L + +F + G + +W+ ++ ++ LPT+LF + +L Sbjct: 240 G--WGVFLVPTTIFQSQESQG---LLKWMSTAAYLQGLLNLPTNLFLDEKSRKSIVVLQK 294 Query: 413 R-KTEERRGKVQLIN 426 + + GKV L + Sbjct: 295 HGQRAHQAGKVLLGD 309 >gi|67920387|ref|ZP_00513907.1| type I restriction enzym, M protein [Crocosphaera watsonii WH 8501] gi|67857871|gb|EAM53110.1| type I restriction enzym, M protein [Crocosphaera watsonii WH 8501] Length = 77 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPP 300 HG + + + M++ + I+ +LS+ + + F L+NPP Sbjct: 2 FHGFDFDGTMLRIGSMNMMLHGI-------QDPKIEAKDSLSEKSGYVDEAFSLILANPP 54 Query: 301 FGKKWEK 307 F EK Sbjct: 55 FKGSIEK 61 >gi|332289620|ref|YP_004420472.1| Eco57I restriction endonuclease [Gallibacterium anatis UMN179] gi|330432516|gb|AEC17575.1| Eco57I restriction endonuclease [Gallibacterium anatis UMN179] Length = 1426 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 48/404 (11%), Positives = 113/404 (27%), Gaps = 79/404 (19%) Query: 92 GSTNTRNNLESYIASFSDNA--------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 +++ S + FS +F + + + F + Sbjct: 850 KQHQVEDDIRSRLRGFSRTIPSFLMAYGMENISLANFDEIVDDDVFKEVTGISLEQFRQL 909 Query: 144 ELHPDTVPDRVMSNIYEHLIRR---FGSEVSEGAED-------------FMTPRDVVHLA 187 + V + + + + E E+ TP+ VV + Sbjct: 910 RDKYQFFDENVFNESVKEFLAKRTALADYFDETLEEDIFDYIPPQKTNQIFTPKKVVKMM 969 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD--------AMNHVADCGSHHKIPPI 239 L +F + M +T D +G FLT+ + D K Sbjct: 970 LDKLEQECPDIFTD---MHKTFADLYMKSGLFLTEIVKRLYKGLEKEIPDKTERLKHIIE 1026 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--------TLSKDLFTGKR 291 +G + + + E + KNI ++L + Sbjct: 1027 KQIYGFAPSEIIYRIARN--FVLGFEQGILQIEGKNIICQDLTDCAMGKKSIEELGEKMK 1084 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + NPP+ + + + + L Sbjct: 1085 FDVVVGNPPYQENAKGESTKDMPIYHYFYD--------------------------LAEK 1118 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV--ALPTDLFFRTNIATYLWI 409 G + ++ + LFN AGS + + +L ++ ++ + ++F T+I + + Sbjct: 1119 VGTKYCLISPARFLFN--AGSTDKSWNQKMLNDEHLKVVYYNQKSDEVFVGTDIKGGVAV 1176 Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 L + + + + ++ + + K + +I+ Sbjct: 1177 LFRDNS-KIFDPIGIF---TVFEELNSIIHKVEKLTARTIDEIV 1216 >gi|226228126|ref|YP_002762232.1| hypothetical protein GAU_2720 [Gemmatimonas aurantiaca T-27] gi|226091317|dbj|BAH39762.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 1105 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 42/188 (22%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD-----VVHLAT 188 Y+ + V ++ +E L+ +E + F TP + T Sbjct: 322 YRFTAHEDSTSWSEAAVDPEMLGRAFESLM---AAEDRRRSGAFYTPPHLVDAAISEALT 378 Query: 189 ALLLDPDDALFKESPGMIRT---------------LYDPTCGTGGFLTDAMNHVADCGSH 233 ALL A+ +ES + + DP CG+G FL A+ Sbjct: 379 ALLPSIPAAVLEESSNAPLSAEAAFTITHRLACLRVLDPACGSGAFLVRALERFDTLLKR 438 Query: 234 HKIPPILV----------PHGQELEPETHAVCVAGMLI------RRLESD---PRRDLSK 274 G + +P +C + + + D P +L Sbjct: 439 AGDQRPAHERRRALLTLGIFGVDRDPMAVWLCELRLWLAVVIECHDPDIDRIAPLPNLDH 498 Query: 275 NIQQGSTL 282 +I+ G +L Sbjct: 499 HIRIGDSL 506 >gi|28211851|ref|NP_782795.1| modification methylase bstVI [Clostridium tetani E88] gi|28204293|gb|AAO36732.1| modification methylase bstVI [Clostridium tetani E88] Length = 601 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 95/310 (30%), Gaps = 35/310 (11%) Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE--HLIRRFGS-EVSEGAEDFMTP 180 I L+ LY + + + LIR F + + T Sbjct: 22 INFLKDIEDLYNVIVQPIDNIYKNTALESCRKKYNLKKNELIRDFYILNIEKKNGVVYTT 81 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236 ++ + + +D + DP+ G G + +++ + Sbjct: 82 EEISNYLVKNTIKKED----IINNPYIKIIDPSSGCGNIIFAIFDYLINIYVKSLDEINK 137 Query: 237 PPILVPHGQEL-----EPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTLSKDLFT 288 L + + + H + + ++ L D + NIQ L+ D+ Sbjct: 138 KNNLELSMENIKNHIVKNNLHVIDIDNFALKILVIDFFYKNNIIFSNIQNKDFLTDDI-- 195 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 +F+ + NPP+ +EKE+ +G SD S F +K + Sbjct: 196 EGKFNIFIGNPPYIG-----HKDIEKEYFKNIKENYGEIYINKSDLSYCFFKGSFDKGKD 250 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFRTNIATYL 407 + + S L + SG +R+++ N I IV F I + Sbjct: 251 ----NCKITFITSRYFL---ESESG-KNLRKYIANNFYINRIVDFYGIRPFKNVGIDPCI 302 Query: 408 WILSNRKTEE 417 L+ + Sbjct: 303 IFLTKKDKNN 312 >gi|255027628|ref|ZP_05299614.1| type II restriction enzyme, methylase subunit [Listeria monocytogenes FSL J2-003] Length = 378 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 60/238 (25%) Query: 118 FDFSSTIARLE---KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRR------- 165 FDF I LE + ++ +I F V ++S IYEH + R Sbjct: 75 FDFLEDILSLEVQIDSNVIIEIFNELYFPQSPYDFSVVDSTILSQIYEHFLSRRIIINED 134 Query: 166 --F----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 F EVS + TP+ +V L P A + D CG+G F Sbjct: 135 RTFSLIEAPEVSASSGVVSTPKIIVEQIVHETLTPLVADKSFDELNQLKIADICCGSGTF 194 Query: 220 LTDAMNHVADCG---------------------------SHHKIPPILVPHGQELEPETH 252 L A + + + + G ++ P Sbjct: 195 LISAYDFIIEKKMERYIKELKNDSNLVYRMNDNEIVFTLKAKREILENNIFGGDINPYAV 254 Query: 253 AVCVAGMLIRRLESDPRRDLSK---------------NIQQGSTLSKDLFTGKRFHYC 295 V +L++ LE + ++ NI+ G++L + F + Sbjct: 255 EVTEFSLLLKLLEGENESTINDFIQCHDERVLPNLKSNIRCGNSLVDNKFYDFMPNVL 312 >gi|229106045|ref|ZP_04236664.1| hypothetical protein bcere0019_51690 [Bacillus cereus Rock3-28] gi|228677364|gb|EEL31622.1| hypothetical protein bcere0019_51690 [Bacillus cereus Rock3-28] Length = 499 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 52/352 (14%), Positives = 109/352 (30%), Gaps = 48/352 (13%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 ++ E + + TP D+ +++ + + DP CG G + + Sbjct: 24 QLKEKNDQYFTPIDIADFMSSMFKEVKKNEIN--------ILDPGCGIGNLTAALIFKIC 75 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGS----TLS 283 + + P + E++ +L ++ L D L+ I+ L Sbjct: 76 NWK---RKPRAINIELYEVDDTLSDKLDENLLDLKNLCKDKGITLNVKIKYTDFIYAGLK 132 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K + RF Y + NPP+ +K D + + G F+ Sbjct: 133 KINESESRFDYIILNPPY-RKLNSDSNHKRALLQAGIDVPNHYA---------AFIAIAN 182 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA--IVALPTDLFFRT 401 L+ G+ ++ S S R L+ + I+ I DLF+ Sbjct: 183 KLLKNK----GQLVCIVPRSFCSGAYFKS----FREALIMHTKIDRIHIFKSRKDLFYDE 234 Query: 402 NIATYLWILSNRKTEERRGKVQLINA--TDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457 + + + + T++ K+Q+ + D + R + ++ +I+ I Sbjct: 235 VLQETIILSLFKDTQKYNDKIQITESLKNDFAETKRTFKRFDNVVFPTDTEKIIRIIHTT 294 Query: 458 --SRENGKFSRMLDYRTFGYRRIK------VLRPLRMSFILDKTGLARLEAD 501 + + S G +P + F D + D Sbjct: 295 DKAIVDKMHSLPCVLSDLGISVSTGPIVDFREKPESLRFEADFWSYPMIYQD 346 >gi|33323519|gb|AAQ07489.1|AF503408_13 DarB [Enterobacteria phage P7] Length = 2255 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 61/384 (15%), Positives = 120/384 (31%), Gaps = 74/384 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 89 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ + F + Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAINT-PNDSFDH 176 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ + L ++ ++ E + + Sbjct: 273 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319 Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 G++ RI+V ++ K + R E+ I W L S D++ ++ Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMRLING 379 Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553 W + I+++ K LK+ A+ Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403 >gi|206603352|gb|EDZ39832.1| DNA methyltransferase/helicase [Leptospirillum sp. Group II '5-way CG'] Length = 1067 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 87/273 (31%), Gaps = 54/273 (19%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L L S +L+ IA D+ + D S I K+F E Sbjct: 247 LRKLFSHMAGPDLDDRIAWIVDDLAELLNKSDMPS-------------ILKDFGKGEGKE 293 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D V YE + + ++ E + TP VV + FK G+ Sbjct: 294 DPVVHF-----YETFLSHYDPKMRELRGVYYTPEPVVSYIVRSVDRILKETFKLKDGLAD 348 Query: 208 ------------------TLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILV 241 + DP GTG FL + + +++ +K + Sbjct: 349 NTKTDIREGKQKIETHRVHVLDPATGTGTFLYEVIRQISESFKGNKGLWPGYVSDHLLPR 408 Query: 242 PHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 HG EL +A+ G+ ++RL D R + + +T+ +D S Sbjct: 409 IHGFELLMAPYAIAHLKLGLELKRLGYDFRSEERLGVYLTNTM-EDPHP-------FSGA 460 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 P +W ++ + + K G P S Sbjct: 461 PLFMRWLAEETNIADKVKRKHPIMVVLGNPPYS 493 >gi|160945895|ref|ZP_02093121.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii M21/2] gi|158443626|gb|EDP20631.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii M21/2] Length = 2701 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 56/391 (14%), Positives = 111/391 (28%), Gaps = 79/391 (20%) Query: 49 EPTRSAVREKYLAFGGSNIDLESF--VKVAGYSFYNTSEYSLST------LGSTNTRNNL 100 E T V +++ N + ++F + A + Y + +L + + Sbjct: 983 EKTLDEVLDEHPVSIPVNGEWQTFPNARAAEEAAYGEYKENLRRTAENFRITDDHLGEGG 1042 Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNI 158 + NA + ++ +F + A E+ +L + + +T + + Sbjct: 1043 AKAKFRANMNAINLLKELEFDNRQATPEEQEILSRYVGWGGLADAFDETKENWSSEFQEL 1102 Query: 159 YEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 Y L + + T V+ + + +P+CG G Sbjct: 1103 YTTLSPEEYAAARGSTLNAHYTSPTVIKAIYEAVG--------RMGFETGNILEPSCGVG 1154 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDL 272 F ++A +G EL+P + + A + + E+ RRD Sbjct: 1155 NFFGMLPENMAGSK----------LYGVELDPISGRIAKQLYPKADITVAGFETTDRRDF 1204 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + N PFG+ DK + Sbjct: 1205 -------------------YDLAVGNVPFGQYQVNDKAYNKLNFNIHNY----------- 1234 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 K GG A V + +S +RR+L + + + Sbjct: 1235 ---------FFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIR 1280 Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKV 422 LP D F I+ +K + V Sbjct: 1281 LPNDAFKKNAGAEVVSDIIFLQKRDRPLDIV 1311 >gi|317014089|gb|ADU81525.1| hypothetical protein HPGAM_03455 [Helicobacter pylori Gambia94/24] Length = 1198 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 90/313 (28%), Gaps = 43/313 (13%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ IA D D L+ LY+ K + + + + Sbjct: 386 GDNIQNPIAKALDKMVLKLSDLGLEGETKDLKN---LYESVKTEAARAKSQKSQQEL-IK 441 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 442 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQNITIFDPFTG 501 Query: 216 TGGF----LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 TG F L+ + ++D K ++ ++ + + + D Sbjct: 502 TGSFIARLLSKENDFISDEALKEKFQKG--LFAFDIVLLSYYIALINITQAAQNRDSSLK 559 Query: 272 LSKNIQQGSTLSK----------DLFT-----------------GKRFHYCLSNPPF--G 302 KNI +L F + + NPP+ G Sbjct: 560 NFKNIALTDSLDYLEEKSDKGVIPGFEYLFADLKENKEIKNTVTEQNIRVIIGNPPYSSG 619 Query: 303 KKWEKDKDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 K E D + K K + G K + L+H G V Sbjct: 620 AKSENDNNQNLKHPKLEKKVYETYGKNSTAKTGKTTRDALIHSIRMASDLLKDKGVLGFV 679 Query: 360 LSSSPLFNGRAGS 372 ++ S + + A Sbjct: 680 VNGSFIDSKSADG 692 >gi|72161375|ref|YP_289032.1| DNA methylase [Thermobifida fusca YX] gi|71915107|gb|AAZ55009.1| putative DNA methylase [Thermobifida fusca YX] Length = 1222 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 22/141 (15%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK-- 200 + R + ++Y+ L ++ E F TP V L+P F Sbjct: 182 HDFTDPDWNTRFLGDLYQDL----SEDIRENYALFQTPEFVEEFILDYTLEPAIDEFGLD 237 Query: 201 -------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHG 244 ++ L DPTCG+G FL A + + HG Sbjct: 238 GQGGRVYQANSQGFRLIDPTCGSGHFLIGAFHRILARWREAAPGASDWDLIARTLRSIHG 297 Query: 245 QELEPETHAVCVAGMLIRRLE 265 + P A+ +LI ++ Sbjct: 298 VDKNPYAVAIARFRLLIAAMK 318 >gi|307700181|ref|ZP_07637224.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614640|gb|EFN93866.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 621 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 65/228 (28%), Gaps = 31/228 (13%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ YE L+ S A F TP D + + T DP Sbjct: 156 EIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMA----------VQSRDFPVGTWLDPC 205 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRR 270 CG G H+ S+ +++ VA + + + + Sbjct: 206 CGVGNL----AWHLVVAQSNPARFVRENLVLIDVDETALRSAVALLGADFLSGGDHEGLA 261 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 L LSK + + NPP+ + K+ +E F + K Sbjct: 262 QLWAKASNRDFLSKSGLAP--HEFVIVNPPYAR--AKESPGLECAASREYFAYFLEKIAK 317 Query: 331 ISDG-------SMLFLMHL--ANKLELPPNGGGRAAIVLS-SSPLFNG 368 S G S L + + GGR + + LF G Sbjct: 318 TSRGFIAVTPASYLCVPKFAVLRGILEREQPGGRVFVFDNVPDTLFRG 365 >gi|159186358|ref|NP_355767.2| hypothetical protein Atu4892 [Agrobacterium tumefaciens str. C58] gi|159141492|gb|AAK88552.2| hypothetical protein Atu4892 [Agrobacterium tumefaciens str. C58] Length = 697 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 52/247 (21%) Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----- 241 + L + + DP G G FL A + + Sbjct: 1 MVSAAFRG---LNAQGISAAARILDPAAGAGVFLLAAFRELVAARWRSEGHRPDTAALRE 57 Query: 242 -----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---------------- 280 G ++ C G+ + +E DP + Sbjct: 58 ILYKQVRGFDINEAALRFCALGLYLLSIELDPNPKPVDKLHFDDLRGVVLHRPVDTTDVD 117 Query: 281 -----------TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA-VEKEHKNGELGRFGPGL 328 +L + ++ + NPP+ + + E R G G+ Sbjct: 118 RPEAKQLGSLGSLIGEEH-DGQYDLVIGNPPWASATGLEDWNLLLTEVHKIARSRLGDGI 176 Query: 329 --PKISDG--SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 P + + + F+ + L + LF G R+ LLE Sbjct: 177 TAPPLPNAVLDLPFVWRAMRWAKPDAQ----IIFALHARFLFQQG--DGMPLARQSLLEA 230 Query: 385 DLIEAIV 391 + +I+ Sbjct: 231 MDVTSII 237 >gi|148359877|ref|YP_001251084.1| protein methyltransferase HemK [Legionella pneumophila str. Corby] gi|296107927|ref|YP_003619628.1| HemK protein [Legionella pneumophila 2300/99 Alcoy] gi|148281650|gb|ABQ55738.1| protein methyltransferase HemK [Legionella pneumophila str. Corby] gi|295649829|gb|ADG25676.1| HemK protein [Legionella pneumophila 2300/99 Alcoy] Length = 287 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168 + F + +LE LL + F+ HPD + Y +I++ Sbjct: 12 LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67 Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 G +F + PR L L+ ++ + Sbjct: 68 LPIAYITGQREFWSLSLKVTPNVLIPRHETERLVELALELIPD------KENVSVLELGT 121 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G K P+ + E + L Sbjct: 122 GSGAIALAL----------AKERPLWHIDACDFSKEALELARYNAKTLGLN--------- 162 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 NI + + K++H +SNPP+ + H RF P +S Sbjct: 163 NINFCHSYWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKKGDVRFEPTSALVSSQ 214 Query: 335 S-MLFLMHLANKLELPPNGGG 354 + L ++ G Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235 >gi|328541568|ref|YP_004301678.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1] gi|326415710|gb|ADZ72772.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1] Length = 1713 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 72/274 (26%), Gaps = 60/274 (21%) Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + E + + S TP ++ + + + Sbjct: 155 DDLGSSLESAVSESDYSSLSRCTQYAHFTPEFIIRAIWS--------GLQRLGWRGGRVL 206 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P GTG F + G EL+P T + Sbjct: 207 EPGIGTGLFPALMPE---------EYRDSSYVTGVELDPVTARIVK------------LL 245 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I +G DL + + NPPF + + Sbjct: 246 QPKARIIEGDFARTDLSP--IYDLAIGNPPFSDRIVRSDRQYRSLGLRLHDY-------- 295 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ + L+ G AA V SS L +S R + ++ + A Sbjct: 296 -------FIARSIDLLKP----GAFAAFVTSSGTL-----DKADSTAREHIAKSADLIAA 339 Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 + LP F T++ + RK E G Sbjct: 340 IRLPEGSFRRDAGTDVVVDILFFRKRKAGEAEGD 373 >gi|308184456|ref|YP_003928589.1| hypothetical protein HPSJM_03400 [Helicobacter pylori SJM180] gi|308060376|gb|ADO02272.1| hypothetical protein HPSJM_03400 [Helicobacter pylori SJM180] Length = 947 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 86/314 (27%), Gaps = 48/314 (15%) Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 +N+++ IA D L+ LY+ K + + + + Sbjct: 138 GDNIKNPIAKALDKMVLKLSSLGLEGETKDLKN---LYESVKTEATHAKSQKSQQEL-IK 193 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 N+Y + + SE TP +VV + T++DP G Sbjct: 194 NLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 253 Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 TG F+ ++ D S K ++ ++ + + + D Sbjct: 254 TGSFIARLLSKENDLISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 313 Query: 274 KNIQQGST--------------LSKDLFTGK---------RFHYCLSNPPF--------- 301 KNI + L +DL K + NPP+ Sbjct: 314 KNIALTDSLDYLEEKTNKGVLPLYEDLKENKDIKTTMEKQNIRVIIGNPPYSSGAKSENN 373 Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 K + V +++ R + + L G Sbjct: 374 NNQNLSHPKLEKRVTEKYGKNSTSRSVGKTTRDT------LTQSIRMASDVVKDKGVLGF 427 Query: 359 VLSSSPLFNGRAGS 372 V++ S + + A Sbjct: 428 VVNGSFIDSKSADG 441 >gi|148262245|ref|YP_001228951.1| hypothetical protein Gura_0162 [Geobacter uraniireducens Rf4] gi|146395745|gb|ABQ24378.1| hypothetical protein Gura_0162 [Geobacter uraniireducens Rf4] Length = 1016 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 71/400 (17%), Positives = 116/400 (29%), Gaps = 62/400 (15%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAK-AIF---EDFDFSSTIARLEKAGLLYKI------ 136 +L L N NL S N IF FD + L AG L + Sbjct: 197 TLEQLLDENDPENLNSLFEKLHGNFNGDIFFAPCAFDGEAKAPVL-NAGHLRSLAEFRKG 255 Query: 137 -CKNFSGI----ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 +G + +P ++S IY + + + F TP + L L Sbjct: 256 GVDKTTGQGRFWPYNFKYIPVELISAIYNRFLGD-RPVERKVSGAFYTPHFLADLTVNQL 314 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--CGSHHKIPPIL--------V 241 + + T+ DP CG+ FL + + H P Sbjct: 315 WEELTPAIRS--SQDFTVLDPACGSAIFLVRIFQRMVEDWRFLHPGGTPDWDTLVAIVER 372 Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-------------- 287 +G + E + + + I LE + + L LF Sbjct: 373 LNGWDKETSAVRIGIFSLYIALLE-EVEPAAILKLLAERKLLPPLFRKTMCDRDFFGKDT 431 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 +F NPP+ + E + + K EL + + F+ + Sbjct: 432 PNTKFDLVFGNPPWVSRKEDQVVSATEWCKAHELPM------PAKELAWAFVWKSIQHTK 485 Query: 348 LPPNGGGRAAIVLSS-SPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNI 403 G ++L + L N S + R L+ L+ ++ LF Sbjct: 486 SE----GMIGLLLPAMGVLLNHSEPSI--QARGLWLKQVLLSKVINFSDICFLLFDGAKR 539 Query: 404 ATYLWIL--SNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 T L I S++K + R A L R R Sbjct: 540 PTALCIFRPSDKKLSDYRFDYWCPKADPLLQQTRMLTLNR 579 >gi|259417375|ref|ZP_05741294.1| type II restriction enzyme, methylase [Silicibacter sp. TrichCH4B] gi|259346281|gb|EEW58095.1| type II restriction enzyme, methylase [Silicibacter sp. TrichCH4B] Length = 1277 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 82/325 (25%), Gaps = 81/325 (24%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG----------------------M 205 + + TP VV + K + G Sbjct: 470 ESKRKRDGVYYTPEWVVERIVDETVGRRLTDLKAACGWPSEKQNKLPTLEVIDAYEAELR 529 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC---------------------GSHHKIPPILVPHG 244 + DP CG+G FL + ++ D + + +G Sbjct: 530 DIRIVDPACGSGAFLITTLAYLLDEWKALRDLRRQLGQKMAEEDWTDAAVREILRRNLYG 589 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTLSKDLF--------TGKR---- 291 ++ P + + + + SD N I+ G++L F ++ Sbjct: 590 VDINPASVEITKLALWLHTARSDKPLSSLDNHIRDGNSLIGPEFYNGLAPYNEDEKERIN 649 Query: 292 ----------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 F + NPP+ K K + G G+ Sbjct: 650 AFDWQAAFPGVFERGGFDAVVGNPPYVKLQNFRKVHADMAAFLKRDPEEGGVYHSTQTGN 709 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN--GRAGSGESEIRRWLLENDLIEAIVAL 393 + K N GR + S N G G E R L I+ Sbjct: 710 FDLYLPFIEKGIQLLNDDGRLGYIAPSVWQMNAYGAGLRGVVEAGRHLW--GWID----F 763 Query: 394 PT-DLFFRTNIATYLWILSNRKTEE 417 + +F + T L S +E Sbjct: 764 GSHQIFDEATVYTALMFFSKHPNDE 788 >gi|194468360|ref|ZP_03074346.1| conserved hypothetical protein [Lactobacillus reuteri 100-23] gi|194453213|gb|EDX42111.1| conserved hypothetical protein [Lactobacillus reuteri 100-23] Length = 277 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 44/267 (16%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + +IR+ + + TP + + L+ I+T++DP GT Sbjct: 26 FLKVIRKDAIQANHQM----TPDTIGLIMAFLI------EKVTKIKEIKTIFDPAVGTAN 75 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 LT MN + +V +G + + + V ++ L + Sbjct: 76 LLTTVMNQLK-----VNGDKDIVGYGIDNDEDMLEVASVSTELQHLNVKLYHQDAVT--- 127 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + +S+ P G E+ R G S L Sbjct: 128 -------ALDIPQCDLAISDLPIGY-------YPLDENAKNYQTRAKEGH---SYVHHLL 170 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + N L+ G + L S LF + +W+ ++ ++ LP +LF Sbjct: 171 IEQSMNYLKP-----GAFGVFLVPSSLFQTKESQS---FVKWIQSVAYLQGLINLPAELF 222 Query: 399 FRTNIATYLWILSNRKTEERRG-KVQL 424 N + +L + + ++ KV L Sbjct: 223 ANPNAQKSILLLQRQGGDSKQAVKVLL 249 >gi|161870452|ref|YP_001599624.1| hypothetical protein NMCC_1507 [Neisseria meningitidis 053442] gi|161596005|gb|ABX73665.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 660 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 35/139 (25%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250 DP CG G FL A + + + HG E++ Sbjct: 88 QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147 Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295 + M ++ + + R + I ++L + Y Sbjct: 148 AVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDVAEIIHANSLRTPW---QAADYI 204 Query: 296 LSNPPFGKKWEKDKDAVEK 314 +PPF + K+ Sbjct: 205 FGDPPFIGSTYQTKEQKND 223 >gi|163867783|ref|YP_001608987.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] gi|161017434|emb|CAK00992.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476] Length = 1661 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 21/230 (9%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 S S + I + D + + Y K + P + ++ +YE Sbjct: 822 NSISQAMERILAELDKTDIKQESLELQGFYNSVKFRASGITEPQARQNLII-KLYEDFFS 880 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223 + + ++ TP +VV + D F +S G ++ DP GTG F+T Sbjct: 881 KAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 940 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282 + + H E+ + + + K+I T Sbjct: 941 LQSDLIKTEDMEYKFRNDIHANEIVLLAYYIAAINIESTYHSIMKGEYIPFKHIGLTDTF 1000 Query: 283 SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + NPP+ + + D + Sbjct: 1001 RMLEEKNLLQKLFKENSEYLEHQKKLDIKVIFGNPPYSSGQKSENDNAKN 1050 >gi|116330229|ref|YP_799947.1| methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116123918|gb|ABJ75189.1| Methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 545 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 83/256 (32%), Gaps = 33/256 (12%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 ++ F TP V +L G+ R + DP G G F ++ + Sbjct: 8 KNKNKFLGQFFTPERVAGFLVDWILG--AERITSQEGLKR-ILDPAIGNGIFFESVLDKL 64 Query: 228 ADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + + A ++ + D Sbjct: 65 PNLDAEWVGFDLDAQCLSASRSALENRISKAS-ILSFYDRDFLL---------------Q 108 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 ++F L NPP+ + +E G+ LP ++ + FL+ N Sbjct: 109 KENQKFDAILCNPPYR---KISDKNYSRELIQQFEGKSERKLPGTANLYVFFLLKCLN-- 163 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIA 404 N GGRAA ++ +G +S L E+ L+ ++ LF + Sbjct: 164 --LINVGGRAAFLVPQDFFNSGYGVFIKSA----LQESGLLHSLFLFSPQDSLFDEAITS 217 Query: 405 TYLWILSNRKTEERRG 420 + + +L + + E++ G Sbjct: 218 SCILLLESSEKEKKSG 233 >gi|83816335|ref|YP_446911.1| THUMP domain/methyltransferase domain-containing protein [Salinibacter ruber DSM 13855] gi|83757729|gb|ABC45842.1| THUMP domain/methyltransferase domain protein [Salinibacter ruber DSM 13855] Length = 369 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 21/146 (14%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 +S + PR + A L TL DP CG+ L +A + Sbjct: 181 EALSRRQLEGYQPRAALKANVAYALL----RLAHLDAPPNTLLDPFCGSSTILLEAAD-- 234 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL- 286 + +G + E + + + L I++G D Sbjct: 235 --------LWADTQCYGSDWNEEAVSGARTNVDLAGLSDRIA------IRKGDVWHLDET 280 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV 312 F ++NPPFG + D Sbjct: 281 FADVTADLIVTNPPFGVRMASSMDFY 306 >gi|291536748|emb|CBL09860.1| DNA methylase [Roseburia intestinalis M50/1] Length = 2550 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 46/325 (14%), Positives = 91/325 (28%), Gaps = 73/325 (22%) Query: 117 DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164 + D T+ ++E L K+ F G + + E+ L+ Sbjct: 913 NMDAIRTLKQIESENRLATPEEQKVLSKFVGWGGLSQALDEENAGWSKEYAELKNLLSDE 972 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T ++ + L+ + + +P+ G G F Sbjct: 973 EYSAARATVNNAFYTSPEIAMCMNSALV--------QFGFRGGNVLEPSMGIGNFFGSM- 1023 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +G EL+ + + + + NI + Sbjct: 1024 ---------PAPMQRSKLYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1061 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D + + + FL + Sbjct: 1062 TTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY----------------FLAKALD 1105 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 ++ GG A++ + L IR++L E + + LP F T Sbjct: 1106 QVRP----GGMVAVITTKGTLDKANPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1156 Query: 402 NIATYLWILSN--RKTEERRGKVQL 424 + + L RK + V L Sbjct: 1157 EVTADILFLQKRERKIDIEPDWVHL 1181 >gi|87307448|ref|ZP_01089592.1| hypothetical protein DSM3645_28042 [Blastopirellula marina DSM 3645] gi|87289618|gb|EAQ81508.1| hypothetical protein DSM3645_28042 [Blastopirellula marina DSM 3645] Length = 549 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 56/217 (25%), Gaps = 56/217 (25%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 T+ +P CG G FL G EL+ + + A Sbjct: 151 TILEPGCGIGNFL-------------GYGKSDQRFIGVELDSISGRIAKA---------- 187 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 ++ + + + N PF H Sbjct: 188 ---IYPQHDIRIESFHDTKLPHAGIDAVIGNVPFSDLKLDHHGQKFSLHDY--------- 235 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 F + L+ GG A+V S L A IR +L + Sbjct: 236 ----------FFAKSVDALKP----GGVLALVTSHFTLDKQNAA-----IREYLADKVDF 276 Query: 388 EAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKV 422 + LP+D F T + T + L R E V Sbjct: 277 VGAIRLPSDAFKREGTAVVTDIVFLRKRAPGEPAHHV 313 >gi|269977104|ref|ZP_06184078.1| putative methyltransferase, HsdM related [Mobiluncus mulieris 28-1] gi|269934935|gb|EEZ91495.1| putative methyltransferase, HsdM related [Mobiluncus mulieris 28-1] Length = 621 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 65/228 (28%), Gaps = 31/228 (13%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ YE L+ S A F TP D A + T DP Sbjct: 156 EIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMAA----------QSRDFPAGTWLDPC 205 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRR 270 CG G H+ S+ +++ VA + + + + Sbjct: 206 CGVGNL----AWHLVASQSNPARFVCENLVLIDVDETALRSAVALLGADFLSGGDHEGLA 261 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 L LSK + + NPP+ + K+ +E F + K Sbjct: 262 QLWAKASNRDFLSKSGLAP--HEFVIVNPPYAR--AKESPGLECAASREYFAYFLEKIAK 317 Query: 331 ISDG-------SMLFLMHL--ANKLELPPNGGGRAAIVLS-SSPLFNG 368 S G S L + + GGR + + LF G Sbjct: 318 TSRGFIAVTPASYLCVPKFAVLRGILEREQLGGRVFVFDNVPDTLFRG 365 >gi|210610421|ref|ZP_03288401.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787] gi|210152498|gb|EEA83504.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787] Length = 2510 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 51/408 (12%), Positives = 105/408 (25%), Gaps = 94/408 (23%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDL----------ESFVKVAGYSFYNTSEYSLS 89 + +R + ++ E + + + V+ YN + + Sbjct: 805 VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAVQKKHNFHYNL--WEME 862 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC------KNFSGI 143 G+ I + + + + +A E+ L K + F Sbjct: 863 KGGAKTRYQWNMDAIRT--------LKQIESENRLATPEEQKTLSKFVGWGGLSRAFDEN 914 Query: 144 E--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + + M + E+ + + F T ++ + L+ + Sbjct: 915 NESWSKEYKELKEMLSDEEY-----AAARATVNNAFYTSPEIAMCMNSALV--------Q 961 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + +P+ G G F +G EL+ + + Sbjct: 962 FGFRGGNVLEPSMGIGNFFGSM----------PAPMQRSKLYGVELDSISGRIAK----- 1006 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + + NI + + F + N PFG D + + + Sbjct: 1007 -------QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY 1058 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 K GG A++ + L IR++L Sbjct: 1059 --------------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYL 1093 Query: 382 LENDLIEAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424 E + V LP F T + + L RK + V L Sbjct: 1094 AERAELVGAVRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1141 >gi|147677974|ref|YP_001212189.1| hypothetical protein PTH_1639 [Pelotomaculum thermopropionicum SI] gi|146274071|dbj|BAF59820.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 221 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 13/73 (17%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 YE ++ + + + F T R+++ +L + + DP CG+G Sbjct: 2 AYETIV---SNTLKQERGQFFTHRNIIRFMVKMLDPDEKD----------MVLDPACGSG 48 Query: 218 GFLTDAMNHVADC 230 GFL ++HV Sbjct: 49 GFLVVVLDHVRRK 61 >gi|257455835|ref|ZP_05621060.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] gi|257446769|gb|EEV21787.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] Length = 956 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 89/295 (30%), Gaps = 70/295 (23%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 IF F + I ++ L + + S I + + + + YE L S ++ Sbjct: 304 DIFGSM-FQAVIDTQQRGN-LGQHYTSVSNIMKVIEPLFLQGLRAEYEQL----ASLSND 357 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 A + + L T L ++DP CG+G FL A + Sbjct: 358 NAHKNQKAKRLDELLTRL--------------GNIKVFDPACGSGNFLIIAYKELRMLEI 403 Query: 233 H----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 + + G E++ + + + + + + Sbjct: 404 KVWQAKLDMMKGNSQNLSWDFGFDSVISLDNFFGIEIDDFAVQIARLSLWLAEHQMNVKF 463 Query: 271 DLSK-------------NIQQGSTLSKDLFT-----GKRFHYCLSNPPFGKKWEKDKDAV 312 + +I G++L D G++ Y + NPPFG + + Sbjct: 464 REAFGQSRATLPLKDSGHIVHGNSLRLDWQAVCPNDGEQEIYLVGNPPFGGSGNRSDEQT 523 Query: 313 EKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGG--RAAIVLSSS 363 K G K + AN L+ + G + A+V ++S Sbjct: 524 ADMEKV------FAGFKKFKFLDFVTAWFWKGANYLKDSHDKGSQAKMALVSTNS 572 >gi|269926870|ref|YP_003323493.1| hypothetical protein Tter_1765 [Thermobaculum terrenum ATCC BAA-798] gi|269790530|gb|ACZ42671.1| conserved hypothetical protein [Thermobaculum terrenum ATCC BAA-798] Length = 1098 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 83/270 (30%), Gaps = 59/270 (21%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + T + + + YE + + +V E + TP VV + F + Sbjct: 302 DFGRATRQEDPVVHFYETFLAEYDPKVREMRGVYYTPEPVVSYIVRSVDRLLQEHFGQEH 361 Query: 204 G---MIRTLYDPTCGTGGFLTDAMNHVAD----------CGSHHKIPPILVPHGQELEPE 250 G + DP GTG FL DA+ V + + I G EL Sbjct: 362 GLADPNTIVLDPATGTGTFLYDAILRVHESLLSRGLGGLWQGYVAERLIPRIFGFELLMA 421 Query: 251 THAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK---------------------DLF 287 +AV + L+R + + +TL++ ++ Sbjct: 422 PYAVAHLKLSWLLRETGYNLDGSERIGVYLTNTLAEAVQASPLPFAEYISQEANAAAEIK 481 Query: 288 TGKRFHYCLSNPPFG---------------------KKWEKDKDAVEKEHKNGELGRFG- 325 K L NPP+ K +++ + + RFG Sbjct: 482 RDKPIMVVLGNPPYSGHSANRGEWIGNLLRDYYQVDGKPLGERNPKWLQDDYVKFIRFGQ 541 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + + G + ++ + + L+ P G R Sbjct: 542 WRINRTGQGILAYISN-HSYLDNPTFRGMR 570 >gi|152993810|ref|YP_001359531.1| hypothetical protein SUN_2234 [Sulfurovum sp. NBC37-1] gi|151425671|dbj|BAF73174.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1069 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 70/491 (14%), Positives = 136/491 (27%), Gaps = 114/491 (23%) Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI--------- 124 + ++ + + N + N+ Y A + E + + Sbjct: 260 DIEDRDLWHFYKIYFKAINQGNKKLNIPEY-NGGLFAADEVLESLKIDNHVIDACPLALS 318 Query: 125 ----ARLEKAGLLYKICKN-FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 +L I +N + IE + D + F T Sbjct: 319 AYDFNTDIDVNILGHIFENSLNDIEELKARINDTDFDA---------SKSKRKKDGVFYT 369 Query: 180 PRDVVHLATA-------------LLLDPDDALFKESPGM--------------------I 206 P + L LD + ++P Sbjct: 370 PEYITRYIVDNTLGKLCQAKKEALGLDDVEIEVPKNPKKLNKTETKLKEALEAYREYLLG 429 Query: 207 RTLYDPTCGTGGFLTDAMNHVAD-------------------CGSHHKIPPILVPHGQEL 247 + DP CG+G FL A+NH+ + K +G ++ Sbjct: 430 LKILDPACGSGAFLNQALNHLLEEHDFIDEGIRTLMGGSVLGLYDVKKGILENNLYGVDI 489 Query: 248 EPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP--FGKK 304 E + + +R +E L+ I+ G++L D + P FG Sbjct: 490 NAEAVEIAKLSLWLRTVESGRKLNKLADKIKVGNSLIDDKSVAEDAFVWEEEFPEVFGAD 549 Query: 305 WEKDKDAVEKEHKNGELGRFGP----GLPK--------ISDGSML------------FLM 340 + ++K L R G G P D + Sbjct: 550 ASASEKELQKGEAEASLPRGGFDVVIGNPPYVRQELLSAEDKDFFKNHYQTYHGTADLYV 609 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFF 399 + K G + + SSS + +R++L N +IE ++ D +F Sbjct: 610 YFYEKAFSLLKENGHMSYISSSSY----FKSGSGANLRKYLKYNTVIEKLIDFGDDTVFE 665 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK--RRIINDD----QRRQIL 453 ++I + + +++D+ + K + +ND+ IL Sbjct: 666 EATTYPVIFIGRKNNEDNNYISTYIKDSSDMQEIEQYSKGKMHQSRLNDNRWQLADESIL 725 Query: 454 DIYVSRENGKF 464 +Y ++ KF Sbjct: 726 KLYDKIKSNKF 736 >gi|170289995|ref|YP_001736811.1| Type I restriction-modification system methyltransferase subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170174075|gb|ACB07128.1| Type I restriction-modification system methyltransferase subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 651 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 96/291 (32%), Gaps = 47/291 (16%) Query: 104 IASFSDNAKAIF--EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + + SD +I + D + L +A + K+F R Sbjct: 36 LDTLSDWVSSILPVDKLDLNEIKLLLSEAERIKLSVKDFQEKVQRMIPRERR-------- 87 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 +RF + + T R V L L D D+ + DP G+G LT Sbjct: 88 --KRFAA--------YYTIRQVAELMVKLARDLHDSESLI-------IADPFLGSGITLT 130 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 A++ IL G EL P + A +L +S R + ++ G + Sbjct: 131 AAID-------KIGPERILKVWGIELLPLPALIAYASLL----QSMKGRREAIDVIVGDS 179 Query: 282 LSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 + + L+NPPF + K + +E + G G + S+ L Sbjct: 180 FREVPSRDLPKADIILTNPPFTR--WKYLERDYRESLLSLMRELGYGKYMRGESSLQVLS 237 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 + GG VL +S + +S +R E + AIV Sbjct: 238 MFLC--DRALRRGGLLVSVLPASTFYTIYGRGYKSFLR----EEYCLHAIV 282 >gi|159897073|ref|YP_001543320.1| hypothetical protein Haur_0544 [Herpetosiphon aurantiacus ATCC 23779] gi|159890112|gb|ABX03192.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC 23779] Length = 1093 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 16/120 (13%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 ++ +YE ++ + ++ TP +V + + + Sbjct: 339 ERTRDIVKYVYEQIV---PEPLRHSLGEYFTPEWLVEFTLDRVGYQGSQILDQK------ 389 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLI 261 + DP CG+G FL A+ G +L P LI Sbjct: 390 ILDPCCGSGNFLIHAIERYKQAAHAQGWDDSAILHGITNHIFGFDLNPLAMLTARVNYLI 449 >gi|294644265|ref|ZP_06722033.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|292640336|gb|EFF58586.1| conserved domain protein [Bacteroides ovatus SD CC 2a] Length = 875 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG + + K G G + I + F+ + N GG Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|269958154|ref|YP_003327942.1| Type I restriction-modification system methyltransferase subunit-like protein [Xylanimonas cellulosilytica DSM 15894] gi|269306835|gb|ACZ32384.1| Type I restriction-modification system methyltransferase subunit-like protein [Xylanimonas cellulosilytica DSM 15894] Length = 252 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 16/123 (13%) Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + D ++ +Y L + + F TP D+ L A+ + Sbjct: 107 ELHASFDEAGGDLLGPVYMSLRGLSSQQAA---GAFYTPPDLSVLIGAMTM--------- 154 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 P + +P CG GG + + + G+ P +L+P A+ + Sbjct: 155 -PREGAHVMEPCCGAGGMVLGVVKAMRQAGAD---PDTCTWVLNDLDPVAVALAGVNLAA 210 Query: 262 RRL 264 L Sbjct: 211 HGL 213 >gi|49420978|gb|AAT65832.1| M.EsaWC4I [uncultured bacterium] Length = 421 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 63/226 (27%), Gaps = 48/226 (21%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + TP +VV +L P + +P C G FL Sbjct: 6 LLSLPANAAPRSLGRVETPPEVVDFMVSLAEAP----------RGGKVLEPACAHGPFLR 55 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 +G E++P+ + ++ I Sbjct: 56 AFREA---------HGTAYRFYGVEIDPKALDL---------------PPWAEGILADFL 91 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339 L + + F L NPP+G E K + K + ++ FL Sbjct: 92 LWEPR---EAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 L+ GG V+ ++ L + +R++L Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWLVLDD----FALLRKFLAREG 185 >gi|313144182|ref|ZP_07806375.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313129213|gb|EFR46830.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 932 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 14/168 (8%) Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD--- 193 S +L + + ++YE ++ + + E + TP VV + Sbjct: 296 LNKLSQKDLLGEHIYKDPYLHLYEDFLKEYDESLREVRGVYYTPAPVVKFIIDSIDLTLQ 355 Query: 194 ---PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQ 245 L TL D GTG FL +A + + + + +G Sbjct: 356 KDFNKQGLQSAITDDNITLLDFATGTGTFLLEAFRKALESSNKNSVKYNPKALIQRFYGF 415 Query: 246 ELEPETHAVC---VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 E + + ++ E++ + S NI +TL + Sbjct: 416 EFLIAPYTITHLKISQAFKEEFEAELNDNESLNITLTNTLYVSSKADE 463 >gi|310827499|ref|YP_003959856.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612] gi|308739233|gb|ADO36893.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612] Length = 2497 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 66/257 (25%), Gaps = 56/257 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + T ++ + + I + +P CGTG F+ Sbjct: 1002 SEYAAAEGSILNAHYTDPGIISAMYEAV--------QLFGFSIGNVLEPACGTGRFIGTM 1053 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + +G EL+ + + A I + Sbjct: 1054 PMALRESK----------VYGVELDELSGRMAKA------------LYPKAEIT-INGFE 1090 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG D + + + Sbjct: 1091 NTHYPINFFDLAIGNVPFGNYKVADTKYDKLNFQIHDY--------------------FI 1130 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 K GG A + S + S +R+++ + V LP + F N Sbjct: 1131 AKTLDLVRPGGIIAFITSKGTMDKQN-----SSVRQYIARRAELIGAVRLPNNAFSGANT 1185 Query: 404 ATYLWILSNRKTEERRG 420 +L +K E R Sbjct: 1186 KVTADVLFFQKLESMRD 1202 >gi|16800685|ref|NP_470953.1| hypothetical protein lin1617 [Listeria innocua Clip11262] gi|16414104|emb|CAC96848.1| lin1617 [Listeria innocua Clip11262] Length = 332 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 46/259 (17%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP + + LL ++ DP CGT LT +N + K Sbjct: 95 HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----GLK 143 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRF 292 + G +++ ++ + + ++ L +D Sbjct: 144 GDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL--------LHQDGLANLLVDPV 190 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 +S+ P G + D++A E E F LF+ + Sbjct: 191 DVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFLFIEQGMRYTKP---- 236 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 GG ++ + + +++ +N IE I+ LP LF + IL Sbjct: 237 GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILQK 292 Query: 413 RKTE-ERRGKVQLINATDL 430 + + +V L N + L Sbjct: 293 ADVDVKPPKEVLLANLSSL 311 >gi|304385203|ref|ZP_07367548.1| adenine-specific methyltransferase [Pediococcus acidilactici DSM 20284] gi|304328410|gb|EFL95631.1| adenine-specific methyltransferase [Pediococcus acidilactici DSM 20284] Length = 343 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 +++DP GTG L+ +N+ D G + + A+ + L+ D Sbjct: 132 SIFDPAVGTGNLLSTILNYFQDH------QVKFNGTGIDNDDTMLAIASMSFIFEHLKVD 185 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 S D K +S+ P G E G R G Sbjct: 186 LYHQD----------SIDNLLVKNADIVVSDLPVGY-------YPIDERTVGFETRSSEG 228 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S + + + ++ GG + L S LF ++ + + + Sbjct: 229 H------SFVHHLLIEQSMKAVRPGGF--GVYLVPSNLFQTEEA---KKLLAFFHDKIYL 277 Query: 388 EAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQL 424 +AI+ LP+ +F + IL + ++ +V L Sbjct: 278 QAILNLPSKMFKDAKAQKSILILQKVGQNAKQADQVLL 315 >gi|298245670|ref|ZP_06969476.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963] gi|297553151|gb|EFH87016.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963] Length = 579 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 86/288 (29%), Gaps = 47/288 (16%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + N YE + + F TP +V + + + DP Sbjct: 4 HDLVNWYESSL---APTERKTRGHFSTPPRLVEQILDACGFSPERNLTQ-----LRVLDP 55 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG-----QELEPETHAVCVAGMLIR----- 262 CG G FLT ++ + + + +P+ A +A M +R Sbjct: 56 ACGGGNFLTAVLHRLVLSAEANGLSQRQTLSRVQQNIWGFDPDPVACFMAEMHLREALTT 115 Query: 263 --RLESDPRRDLSKNIQQGSTLSKDL------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 R L +I Q L+ L+NPP+ D A Sbjct: 116 YTLQSLQHRSSLPLHIHQADALTFPWGQALAEKRHADIDLFLANPPYLAAKNTDLSAY-- 173 Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 R G SD + + GG +VL L A S Sbjct: 174 --------RQARGHQGQSDS----YLLFLDLALRLVRPGGWIGLVLPDPVLARTNAASE- 220 Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422 R+ LL I + L + +F + + I++ ++ +R +V Sbjct: 221 ---RQALLRETTIHQLWHL-SGVF--SAFVGAVVIVAQKRLPKRSHQV 262 >gi|18311803|ref|NP_558470.1| hypothetical protein PAE0242 [Pyrobaculum aerophilum str. IM2] gi|18159211|gb|AAL62652.1| hypothetical protein PAE0242 [Pyrobaculum aerophilum str. IM2] Length = 1239 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 28/244 (11%) Query: 58 KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIAS----FSD 109 Y A I E G FY + L S R L + Sbjct: 246 TYYALIMKLIAAEIAYLYGGGKFYRSYVAELDDAYSREGVEGIRQVLRDLESGGVFRNLL 305 Query: 110 NAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP----DRVMSNIYEHLI 163 N + E FS + L+K A + +I + S E+ + ++ +Y++L+ Sbjct: 306 NIENFLEGDYFSWYLDELDKELADAVAEIARRLSDYEVAAPQLEPEFARDLLKRLYQNLV 365 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-----GMIRTLYDPTCGTGG 218 E+ ++ TP + L + L K + + DP CG+G Sbjct: 366 ---PGEIRHKLGEYYTPDWLAELVLDEVGLSLKNLLKMGEEDPLKPLKIRVLDPACGSGT 422 Query: 219 FLTDAMNHVADCGSHHKIPPI------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 FL ++ + H + G +L P L+ + Sbjct: 423 FLMLYISRLRRYAEEHYMTDQLLSYVLENVVGYDLNPLAVLTARTNYLLAVADLLSYAKG 482 Query: 273 SKNI 276 I Sbjct: 483 RVEI 486 >gi|329927481|ref|ZP_08281705.1| conserved domain protein [Paenibacillus sp. HGF5] gi|328938445|gb|EGG34832.1| conserved domain protein [Paenibacillus sp. HGF5] Length = 335 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 12/183 (6%) Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 K F L+NPPF + + + G G ++ MLF L + Sbjct: 43 KNKLFDLVLANPPFEVEKLPLEIKTIIQKLFPNHGLNGNVFNRLESTMMLFNSLLV---K 99 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G A V+ S L S +RR+ + ++ I+ LP D F NI T L Sbjct: 100 PD----GTLASVVPISLLNAENQVS----LRRYFADTYHLDKIIYLPDDAFGAENIRTAL 151 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 +L +++ I+ + + + R+ I D Q+ DI ++ + S + Sbjct: 152 VLLKKSASKKHTTVYLAIDGNQNYITKKVGSISRKKILDG-LWQLTDISSTKISNDISII 210 Query: 468 LDY 470 + Sbjct: 211 RNN 213 >gi|227432706|ref|ZP_03914677.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351522|gb|EEJ41777.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1564 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 62/516 (12%), Positives = 134/516 (25%), Gaps = 89/516 (17%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 E F+ LE LY+ + +++ +Y+ + +E Sbjct: 802 LEKAGFTKEQENLEP---LYESV-RMRTEGIEKAEDKQKIIVTLYDKFFKTAFKSTTERL 857 Query: 175 EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232 TP +VV + D F K + DP GTG F+ + ++ Sbjct: 858 GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASQGVHILDPFTGTGTFIVRTLTYLKGHMDA 917 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282 H E+ ++ + + E + + + I T Sbjct: 918 GEISLADITRKFTQELHANEIVLLSYYIAAINIESTFDEINGDEEGYVPFEGIVLTDTFE 977 Query: 283 ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 ++D+ F + NPP+ + D + H Sbjct: 978 STETEDVLDDDYFGTNDERLKCQQEVPITAIIGNPPYSTGQKSTNDDNQNLHYKKLEQSI 1037 Query: 325 GPGLPKISDGSMLFLMHL-----ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 K S + ++ G V ++S + + +R+ Sbjct: 1038 SETYVKNSKAGLKQSLYDSYVKSIRWASDRIVNKGIVGFVSNASFIDSQSTDG----LRK 1093 Query: 380 WLLENDLIEAIVAL--------------PTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425 L + I L +F + T + I K KV Sbjct: 1094 SLYDEFNHLYIFNLRGDQRTQGETSRKEGGKIF-GSGSRTPIAISILVKDGSDNHKVHYH 1152 Query: 426 NATDLWTSIRNEG-----------KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474 + D + + I D+ I ++ +G + + Sbjct: 1153 DIGDYLSRDDKLNILHDKETILNIDWQTIFPDENNDWI-----NQRDGDYEAYMPMSDNQ 1207 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITW----------RKLSPLHQSFWLDILKPMMQ 524 I R + +S D + + +I ++ + + + + + Sbjct: 1208 STPIFYERSMGISSNRDAFVIGFSKENIEINTTSMITFYNNEIDRISKQKGIFTKNDLDK 1267 Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560 W + K K++ + + I+ Sbjct: 1268 DETKIKWTDGLEKR-----ALKSIPINLNAENIIQI 1298 >gi|240147472|ref|ZP_04746073.1| SNF2 family protein [Roseburia intestinalis L1-82] gi|257200328|gb|EEU98612.1| SNF2 family protein [Roseburia intestinalis L1-82] Length = 568 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 69/266 (25%), Gaps = 61/266 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F T ++ + L+ + + +P+ G G F Sbjct: 330 EEYSAARATVNNAFYTSPEIATCINSALV--------QFGFKGGNVLEPSMGIGNFFGSM 381 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +G EL+ + + + + NI + Sbjct: 382 ----------PAPMQQSRLYGVELDSISGRIAK------------QLYQNANI-SITGFE 418 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG D + + + Sbjct: 419 NTTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FL 458 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A++ + L IR++L E + + LP F Sbjct: 459 AKALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAG 513 Query: 401 TNIATYLWILSN--RKTEERRGKVQL 424 T + + L RK + V L Sbjct: 514 TEVTADILFLQKRERKIDIEPDWVHL 539 >gi|229543537|ref|ZP_04432597.1| N-6 DNA methylase [Bacillus coagulans 36D1] gi|229327957|gb|EEN93632.1| N-6 DNA methylase [Bacillus coagulans 36D1] Length = 333 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 83/246 (33%), Gaps = 46/246 (18%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + A MTP + L + + + ++ DP GTG L +N ++ Sbjct: 88 ANVQANHQMTPDSIGLLMSYFIGKFTEDTSA------FSILDPAVGTGNLLATILNQLSG 141 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + +G +++ + A +L +E + LS Sbjct: 142 KN--------ITAYGVDIDDVLIRLAYTGANLLHHEIELFTQ----------DALS--QL 181 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + + P G + D A + + K E S LF+ L Sbjct: 182 FIDPVDVVVCDLPVGY-YPNDAGAADYKLKADEGH---------SYAHHLFIEQ---SLR 228 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GG ++ + LF + ++R++L E I+AI+ LP +F A + Sbjct: 229 AARPGGFLFFLIPNG--LFETKEAP---KLRQFLKEEADIQAILQLPMTIFKNEQAAKSI 283 Query: 408 WILSNR 413 +++ + Sbjct: 284 FVIRKK 289 >gi|283826929|ref|YP_003377691.1| putative restriction enzyme [Corynebacterium glutamicum] gi|283362269|dbj|BAI66026.1| putative restriction enzyme [Corynebacterium glutamicum] Length = 1030 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 23/201 (11%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 + + E F +A + + I + S V+ +YE +I Sbjct: 256 NAAIYNVVESDFFDWILADEDGKKFITHIIRRVSVFNW--SETEHDVLKVLYESVI---N 310 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + +G ++ TP + + + + + DP+CG+G F+ A+ V Sbjct: 311 AATRKGMGEYYTPDWLAEGIVE---------KTVTEPLKQRVLDPSCGSGTFVFHAIRRV 361 Query: 228 ADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL--SKNIQQ 278 D G ++ P + + L+ + + Sbjct: 362 LDAADKAGWDNRTALNHIQGHVFGLDIHPVSVVLARVTYLLALGDRLQGDRDGIYVPVHL 421 Query: 279 GSTLSKDLFTGKRFHYCLSNP 299 G ++ +P Sbjct: 422 GDSMQWYQPADHEEQTIKVDP 442 >gi|237723835|ref|ZP_04554316.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437850|gb|EEO47927.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 241 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 18/133 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ +++ + F TP V L + S + + D Sbjct: 74 DVLGDMFMECVSH------GNNGQFFTPIHVAGLMACMGG--------NSLKPKQLVCDS 119 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG+G L A+ A+ ++ +G +++ + V +++ + + Sbjct: 120 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 175 Query: 273 SKNIQQGSTLSKD 285 + +Q + D Sbjct: 176 TLTMQHWRSYHID 188 >gi|288560421|ref|YP_003423907.1| restriction enzyme methylase subunit [Methanobrevibacter ruminantium M1] gi|288543131|gb|ADC47015.1| restriction enzyme methylase subunit [Methanobrevibacter ruminantium M1] Length = 903 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 62/245 (25%), Gaps = 56/245 (22%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 Y K + T+ + +I++ ++ + T + L Sbjct: 269 YNQLKEICKFDW--STISPAIFGSIFQSIM---NEDERRQLGAHYTSESNILKVINSLFM 323 Query: 194 PDDALFKESPGMIRT-------------LYDPTCGTGGFLTDAMNHVADCGSHH------ 234 D +DP CG G FL A + Sbjct: 324 NDLWEEFRKAKKNSKKLEQLRDKMGKLKFFDPACGCGNFLIIAYRELRLLEYEILNILHN 383 Query: 235 ----------------KIPPILVPHGQELEPETHAVCVAGML------------IRRLES 266 I +G E+E + M + +S Sbjct: 384 IKSERDTQVLFDSKELSNIKIENFYGIEIEEFPSLIAKVAMWFIEHQMDLKYEQLNIHKS 443 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFH---YCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + S NI QG+ L D + + L NPPF + +KE K G Sbjct: 444 NLPLISSANIIQGNALKIDWTQFLQPTNEVFVLGNPPF-VGSREQTKEQKKEMKEVFKGV 502 Query: 324 FGPGL 328 GL Sbjct: 503 KRNGL 507 >gi|256845761|ref|ZP_05551219.1| helicase [Fusobacterium sp. 3_1_36A2] gi|256719320|gb|EEU32875.1| helicase [Fusobacterium sp. 3_1_36A2] Length = 2122 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 54/391 (13%), Positives = 100/391 (25%), Gaps = 77/391 (19%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F TP+ +++D + +P+ G G F+ Sbjct: 619 EEYTKARGSTLTAFFTPK--------IVIDNIYKGLDNLGFKEGKILEPSSGIGNFIGSI 670 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + EL+ + + NI Q Sbjct: 671 PEKME----------NSKFYSVELDSLSGRIEKT------------LYPQANI-QIDGFE 707 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F + N PFG DK+ + F Sbjct: 708 NTDFKNNFFDVAVGNVPFGDFKVNDKEYDRNNFLIHDY----------------FFAKSI 751 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +K+ GG A + NG + IRR++ E + V LP + F Sbjct: 752 DKVRP----GGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 802 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T + + + L R+ + D + + K N I + Sbjct: 803 TEVTSDIIFLKKREER-------FVGEEDWYK--TSTDSKGLSYNKYFIDNPGMILGNMI 853 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 S I P + + + ++ R + + + Sbjct: 854 E--VSGRFGNT------ITCE-PTQDLKDIFPGAIENIKGTYKERDIKEEDINITYYQTQ 904 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551 + + + F KE+ + E K K K Sbjct: 905 EVRNFSFFRENDKVFYKENNEVEEIKDNKEK 935 >gi|242240458|ref|YP_002988639.1| hypothetical protein Dd703_3043 [Dickeya dadantii Ech703] gi|242132515|gb|ACS86817.1| conserved hypothetical protein [Dickeya dadantii Ech703] Length = 871 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 48/199 (24%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI 206 + + ++++ +I E T R+++ + L LDP + Sbjct: 237 SEINPDIFGSMFQAVID---VEQRSRLGQHYTSYRNIMKVIQPLFLDPLRVELDKQRNNA 293 Query: 207 R------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------------- 240 + ++DP CG+G FL A + + Sbjct: 294 KGLKALLVRLGKIKVFDPACGSGNFLIVAYKALRNLEIEVIEALRELEPQTFSMSGLHLS 353 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF 287 +G E++ + + + + + + + + NI G++L D + Sbjct: 354 QFYGIEIDDFASQIARLSLWLAEHQVNSQWEKAFGFAPLALPLRESGNIHSGNSLRLDWY 413 Query: 288 -----TGKRFHYCLSNPPF 301 Y + NPPF Sbjct: 414 QVCPKKVDDEVYVIGNPPF 432 >gi|261369092|ref|ZP_05981975.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176] gi|282568780|gb|EFB74315.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176] Length = 2744 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 73/279 (26%), Gaps = 64/279 (22%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 + T ++V + + + +P+ G G F Sbjct: 990 YYTSPEIVRAMYS--------TLERFGLQGGNILEPSMGVGAFF---------ANRPASF 1032 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 G EL+P T + + NIQ K F + Sbjct: 1033 DESANLFGVELDPVTGRIAK------------QLYPKANIQIC-GYEKATLPDSYFDVVI 1079 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D + F +KL + GG Sbjct: 1080 GNVPFGQYKVNDPAFNRYNFLIHDY----------------FAAKSIDKLRV----GGIQ 1119 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 AI+ + +G ++R++L + V LP F T + + L Sbjct: 1120 AIITT-----SGTMDKQTEDVRKYLAARCELIGAVRLPNTAFKALAGTEVTADILFLQK- 1173 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 R + + + L T +G D I Sbjct: 1174 -----REHILDQDVSWLHTGTNADGIPMNQYFIDHPEMI 1207 >gi|83816871|ref|YP_446985.1| BseRI endonuclease, putative [Salinibacter ruber DSM 13855] gi|83758265|gb|ABC46377.1| BseRI endonuclease, putative [Salinibacter ruber DSM 13855] Length = 1068 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 78/237 (32%), Gaps = 25/237 (10%) Query: 92 GSTNT-RNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 G + + LE + F+ F D DF + R E L + + + D Sbjct: 278 GDDHIDQEELEGILQGNIFAKYNVENFVDQDFYDWVGREEHFQHLQPVFRQLTSQIGQYD 337 Query: 149 TV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + ++ +Y+ LI + ++ TP + L G Sbjct: 338 FSLVDEDILKGVYQELID---IDTRHQLGEYYTPDWLCERVVDELDI----------GGN 384 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPETHAVCVAGMLIRRLE 265 ++ DP CG+G FL + D I G ++ P + + +L+ E Sbjct: 385 SSVLDPACGSGSFLRAVIEKFKDEHPDLSARDILERVVGVDIHPLSVQIAKTTVLLTLSE 444 Query: 266 S--DPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 RR +S + +TL + G+ F + P+ E +D + Sbjct: 445 KIRSLRRPVSLKVHLSNTLHAPEGSVDMFGEEFRMMIDGDPYRITVEVFEDPTTFDA 501 >gi|197294496|ref|YP_001799037.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171853823|emb|CAM11767.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] Length = 225 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 74/287 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP V +L + DP G G Sbjct: 1 MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSLQIQRGL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E T N+ Sbjct: 52 LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395 +L + IVL + F S S+ + L + I +I++LP Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178 Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434 D+F + + I + K + IN+++ + Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225 >gi|67925379|ref|ZP_00518729.1| hypothetical protein CwatDRAFT_0727 [Crocosphaera watsonii WH 8501] gi|67852775|gb|EAM48184.1| hypothetical protein CwatDRAFT_0727 [Crocosphaera watsonii WH 8501] Length = 516 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 76/253 (30%), Gaps = 44/253 (17%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + F TP V + + + + +T+ DP G G Sbjct: 7 IANTKISYRKDYGQFFTPSIVSSIMAKWITENE----------PKTILDPAFGLG----V 52 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 ++ ++ + + I + + + + I L Sbjct: 53 FYEEISKLSLQYQ-----------WNLTAYEI---DNNILDYLDNIQDNKNITILNQDFL 98 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + + NPP+ + + ++G+ G S+ + +FL+ Sbjct: 99 VS---EINYYDAIICNPPYMRFQKFINRHNILPKIEQQIGKKLVGY---SNIASIFLIKA 152 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400 +L N GR A +L G EI++ L+E L++ I+ D+F Sbjct: 153 LQQL----NSNGRLAFILPFEFFNTGYG----KEIKKTLIEKHLLKQIIIFANEKDIFPD 204 Query: 401 TNIATYLWILSNR 413 + N Sbjct: 205 ATTTICILFCENN 217 >gi|298483930|ref|ZP_07002101.1| DNA methylase [Bacteroides sp. D22] gi|298269990|gb|EFI11580.1| DNA methylase [Bacteroides sp. D22] Length = 1345 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG + + K G G + I + F+ + N GG Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|294806707|ref|ZP_06765537.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294446084|gb|EFG14721.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 920 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG + + K G G + I + F+ + N GG Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|262381266|ref|ZP_06074404.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296443|gb|EEY84373.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1665 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 47/360 (13%), Positives = 97/360 (26%), Gaps = 52/360 (14%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + +L K +N D + + + N+YE + + + TP + V Sbjct: 844 KDTEVLNKFYENVRMNVGDIDNLEGKQTLIKNLYEKFFKGAFPKTVDKLGIVYTPVECVD 903 Query: 186 LATALLLDPDDALFK-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + D F + DP GTG F+T + + H Sbjct: 904 FIIHSVDDILRKEFDCSLSDENVHILDPFTGTGTFITRLLQSGLIRPEDLERKYKNEIHC 963 Query: 245 QELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK------------------ 284 EL + + + + L + I T Sbjct: 964 NELVLLAYYIADVNIESVFHSLVKRDTYLPFEGICLTDTFQTTENEENVLDQTWFPENAA 1023 Query: 285 --DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFL 339 D + NPP+ + D + R K + + + L+ Sbjct: 1024 NVDKQKKAPVRVIMGNPPYSVGQKSANDNAQNLSYAHLDKRIAETYAKAAQATNKNSLYD 1083 Query: 340 MHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 ++ GG A + + + + +G A G R+ L ++ L Sbjct: 1084 SYIKAFRWASDRIADCKDGGVVAFISNGAWI-DGNAQEG---FRKCLEGEYSSVYVLNLR 1139 Query: 395 TD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 + +F + + L ++ + +Q + D + + K Sbjct: 1140 GNQRTSGELSRKEGGKIFGSGSRTPISITFLVKNPEKKGKATIQYHDIGDYLSREQKLKK 1199 >gi|172039696|ref|YP_001799410.1| putative methylase [Corynebacterium urealyticum DSM 7109] gi|171851000|emb|CAQ03976.1| putative methylase [Corynebacterium urealyticum DSM 7109] Length = 607 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 54/216 (25%), Gaps = 45/216 (20%) Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------- 233 L A + DP CG G FL A + + Sbjct: 185 RLIQAKSTPGEKPREFRGSLADMVFCDPACGCGNFLVVAYRELRKIETAVIVAIREREGE 244 Query: 234 ---------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----------- 273 + I +G EL + M + +++ + Sbjct: 245 AGMSLDVSWEQKLSIGQFYGFELNWGPAKIAETAMFLVDHQANLELADAIGAAPDRLPIE 304 Query: 274 --KNIQQGSTLSKDLFTGKRF----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I + L+ D + NPPF ++ K K + R G Sbjct: 305 ITAHIVHDNALALDWSEELPATKGQTFIFGNPPFIGQYSKTK-------EQTADMRRAWG 357 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 L H L + + G A V +S Sbjct: 358 ADYDGYLDYLTAWHAMT-LRVLSDRAGEFAFVTPNS 392 >gi|282921316|ref|ZP_06329034.1| II DNA/RNA helicase [Staphylococcus aureus subsp. aureus C427] gi|282315731|gb|EFB46115.1| II DNA/RNA helicase [Staphylococcus aureus subsp. aureus C427] Length = 1311 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 78/541 (14%), Positives = 150/541 (27%), Gaps = 76/541 (14%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK-NFSGIELH 146 L N+ N S K + F RL Y+ K SGI+ Sbjct: 780 FEALFDQNSFVNNNPVSQSMEKVVKE-LQKAGFEKEQDRL---KPFYESVKLRASGIDNA 835 Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGM 205 +++ +YE S+ TP +VV + + F++S Sbjct: 836 ESKQK--LITTLYEKFFSTGFKTTSKRLGIIFTPVEVVDFIIKSVDEILQNHFEKSLSSK 893 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAG 258 + DP GTG F+ ++++ +K H E+ ++ + Sbjct: 894 GVHILDPFTGTGTFVARVLSYLKSQMEQNKISMADIVHKYTKELHANEIILLSYYIAAIN 953 Query: 259 M--LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRF----------------HYCLS 297 + ++++ + I T D F + Sbjct: 954 IETTFNEIDTNLEYQPFEGIVLTDTFESTENDNTFDDIFFGINNKRLKQQKKLPITAIIG 1013 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGR 355 NPP+ K D ++ G+ + + ++ L + G Sbjct: 1014 NPPYKKIKATANDFTAVQNYPMLDGKINETYARETSANLKNSLQDSYIRALRWSTDRIGD 1073 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDL----------------IEAIVALPTDLF- 398 I+ NG S R +LE D EAI ++F Sbjct: 1074 TGII--GFITNNGYIDSASLNGVRKVLEKDFNYIYVINLKGSLSGLSSEAIKREGKNIFD 1131 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIIND-DQRRQILDIY 456 +T +A + + K ++ + +L + + I D D I D Sbjct: 1132 IKTGVAIIILV----KDGSNAHSIKYYDIGNNLSKQEKLDILSNNSIKDLDFIDIIPDEN 1187 Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD-------------KTGLARLEADIT 503 N + Y G + V + + F + + + R+ ++ Sbjct: 1188 GDWINHRDKNYGKYLALGGEKDAVFQNKLVGFNTNRDFWSFNFSKKEVEKNIERMISNYN 1247 Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563 + LK + W++ + IKS + K + F Sbjct: 1248 TEIEKSNDYDTQEEKLKNLNSNESYIKWSQGLKDKFIKSEKLNFKPNKIILTQAKPFTKK 1307 Query: 564 F 564 Sbjct: 1308 I 1308 >gi|307154593|ref|YP_003889977.1| Eco57I restriction endonuclease [Cyanothece sp. PCC 7822] gi|306984821|gb|ADN16702.1| Eco57I restriction endonuclease [Cyanothece sp. PCC 7822] Length = 529 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 48/249 (19%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E + F TP + + +L D +T+ DP G G + Sbjct: 21 EHRKKYAQFFTPYPIAYFMAKWILGNPD---------CQTILDPAFGLG----VFARAIL 67 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 D + + + + + Sbjct: 68 DQTNTPIKISGFELDRWIFTEAKQLIEKDNISLYNQDYLFTD-----------------W 110 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKL 346 K++ + NPP+ K D KE +N G+ ++ LFL+ ++ Sbjct: 111 DKKYDGIIGNPPYLKFHSYDNKNSLKEIEN------KLGITLSGLTNLYTLFLLKSLAQI 164 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL--PTDLFFRTNIA 404 + GR A ++ S L + I+ +LL++ + I+ L +F Sbjct: 165 KP----NGRIAYIVPSEFLNSDYGKG----IKEYLLKDGKLRYILILDFQETIFNDVVTT 216 Query: 405 TYLWILSNR 413 + + + +N Sbjct: 217 SSILLFAND 225 >gi|197294328|ref|YP_001798869.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171853655|emb|CAM11534.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] Length = 225 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 74/287 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP V +L + DP G G Sbjct: 1 MYRVDRNNFFKNEKKTTIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E T N+ Sbjct: 52 LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395 +L + IVL + F S S+ + L + I +I++LP Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178 Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434 D+F + + I + K + IN+++ + Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225 >gi|67922009|ref|ZP_00515525.1| similar to Type II restriction enzyme methylase subunits [Crocosphaera watsonii WH 8501] gi|67856225|gb|EAM51468.1| similar to Type II restriction enzyme methylase subunits [Crocosphaera watsonii WH 8501] Length = 779 Score = 46.9 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 45/186 (24%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI------- 206 N++E + + + T D++ + + + + + + Sbjct: 294 FGNLFEGTV---NEDERHAYGIYYTSEADIMKIIRPTISRYWEDKIEAAKNIGELNQLQL 350 Query: 207 ----RTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPI----------LVPHGQ 245 + DP CG+G FL A + + +G Sbjct: 351 ELQQYKVLDPACGSGNFLYVAYQELKRIEQLLLNKIYQRRKSKNEQMIMGFVTLKQFYGM 410 Query: 246 ELEPETHAVCVAGMLI----------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ P + ++I P L NI L D + Sbjct: 411 DINPFAVELARVTLMIARKVAIDKFELTENYLPLDSLDDNILCQDALFNDW---VKADAI 467 Query: 296 LSNPPF 301 + NPPF Sbjct: 468 IGNPPF 473 >gi|238925906|ref|YP_002939424.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC 33656] gi|238877583|gb|ACR77290.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC 33656] Length = 2560 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 74/260 (28%), Gaps = 57/260 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T V+ +L + G + +P+ G G F Sbjct: 1024 EEYAAARASTLNAHYTQPIVIDSMYQVL-----ENLGFTKG---NILEPSMGVGNFFGML 1075 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++ +G EL+ + + NI Q Sbjct: 1076 PENL----------NQSKLYGVELDSISGRIAK------------LLYPDANI-QIKGFE 1112 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K + F + N PFG D+ RF + FL Sbjct: 1113 KTDYPNDFFDVTIGNVPFGAYKVNDRQ----------YDRFNFMIH-----DY-FLAKTI 1156 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402 ++L GG AA++ + + E+R++L E + + LP F Sbjct: 1157 DQLRP----GGVAALITTKGTM-----DKASPEVRKYLAERADLLGAIRLPNTAFKANAG 1207 Query: 403 IATYLWILSNRKTEERRGKV 422 IL +K + ++ Sbjct: 1208 TEVSADILFFQKRDSMTKEM 1227 >gi|72163127|ref|YP_290784.1| DNA methylase [Thermobifida fusca YX] gi|71916859|gb|AAZ56761.1| putative DNA methylase [Thermobifida fusca YX] Length = 1208 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 49/181 (27%), Gaps = 39/181 (21%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + +F+ +L R ++ +Y+ L + TP VV L L+ Sbjct: 183 GTLIHDFTDPDL-----DTRFLAELYQEL----SESARAADDLLPTPDFVVDFLLDLTLE 233 Query: 194 PDDALFKESP--------------GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---- 235 P F P DP CG+G FL + Sbjct: 234 PAIDEFGLDPELDVHDSSGAPVWRHRGLRTVDPACGSGEFLLGLFTRILARNRAAAGPGA 293 Query: 236 ------IPPILVPHGQELEPETHAVCVAGMLIRRL------ESDPRRDLSKNIQQGSTLS 283 + HG + P + +LI L D D +I G L Sbjct: 294 DRWELVRKALNSVHGCDKNPFAANIARFRLLIAVLRETGARRLDQAPDFPVHIAVGDALL 353 Query: 284 K 284 Sbjct: 354 H 354 >gi|224026703|ref|ZP_03645069.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM 18228] gi|224019939|gb|EEF77937.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM 18228] Length = 1659 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG + + K G G + I + F+ + N GG Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|300214269|gb|ADJ78685.1| Adenine-specific methyltransferase [Lactobacillus salivarius CECT 5713] Length = 339 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 122/369 (33%), Gaps = 44/369 (11%) Query: 85 EYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 EYSL + NL++ Y+ + + + I ++ + + K+ + ++ Sbjct: 11 EYSLLEEAVKELQKNLQTTYLDALIETLENILDNNQVHVEDDK-PDKKTVAKLKELYADS 69 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + + + + LI + SE A MTP + + + L+ Sbjct: 70 NI--KNLEADEKRQVIQLLILKSYSEDKIQANHQMTPDSIGMIVSYLI------ELFADS 121 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + T+ D GTG LTD N++ + + +G + + A+ Sbjct: 122 KKVLTITDICVGTGNLLTDIYNNLDKQNKNIQ------AYGIDNDDTLLALA-------- 167 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 S + +NI+ + + + + + P G + D V G Sbjct: 168 --SISTQFQKQNIELYHQDAIEELLIPKTDLVVGDLPVG--YYPIDDKVSDYITKNNDG- 222 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 S + + +L+ I + +F ++ +++ + Sbjct: 223 -------HSYAHYVLIEKSIRQLKEDG-----IGIFIVPRGIFE---VKDSVKLLKYIQK 267 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 ++ ++ LPT+LF + ++ + + ++ + L+ + K Sbjct: 268 VGYLQGLLNLPTELFNDKQSMKSILVVQKKGNKAKQAEEVLLGDFPSFKKQEEFKKFINE 327 Query: 444 INDDQRRQI 452 I ++ I Sbjct: 328 IVSWAKKNI 336 >gi|293369550|ref|ZP_06616128.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|292635254|gb|EFF53768.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] Length = 1659 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K G + I + F+ + N GG Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|21655249|gb|AAM49818.1| putative methylase [Borrelia hermsii] Length = 1048 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 25/212 (11%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 K S ID ++ K +F + L + I + I Sbjct: 231 LAKLNNTSNSRIDFDNIKKFIPNNFALIQ--DILKLIDNIASSREYDSIRWVLEELIDIV 288 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + D ++ + F+ D YE + ++ + + Sbjct: 289 NNIDSNTIFEQFS-----------FTQNVKSSDNNVKDPYLYFYEDFLAKYDKSLRKNKG 337 Query: 176 DFMTPRDVVHLATA----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP VV+ + +L + T+ D GTG FL + + + Sbjct: 338 VYYTPHSVVNFIVSSLNKILKYNFGLENGFANREEVTVLDFATGTGTFLLEVIKCILKEI 397 Query: 232 SHHKIPPILV--------PHGQELEPETHAVC 255 +G E +AV Sbjct: 398 PKQTGKQKDYINDHILKNIYGFEYLMAPYAVA 429 >gi|55822815|ref|YP_141256.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus CNRZ1066] gi|55738800|gb|AAV62441.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus CNRZ1066] Length = 125 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 43/142 (30%), Gaps = 21/142 (14%) Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 T I + IL + + ++A+ + ++N ++ + + +I + + Sbjct: 1 MNTGIPVCVLILKKNRANS---DILFVDASQGFEKMKN----QKQLRPEDIYKITETVIH 53 Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518 R+ + + + L+ T+ + P+ + Sbjct: 54 RK---------AVDKYSHLATLEEVIENDYNLNIPRYV-----DTFEEEEPIDLADIQGQ 99 Query: 519 LKPMMQQIYPYGWAESFVKESI 540 + + +I + + + Sbjct: 100 IDEVDAEIAKANQTLANHFKEL 121 >gi|53714149|ref|YP_100141.1| putative DNA methylase [Bacteroides fragilis YCH46] gi|52217014|dbj|BAD49607.1| putative DNA methylase [Bacteroides fragilis YCH46] Length = 1659 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K G + I + F+ + N GG Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|106534258|gb|ABF82190.1| putative methylase [Borrelia hermsii DAH] Length = 753 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 25/212 (11%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115 K S ID ++ K +F + L + I + I Sbjct: 231 LAKLNNTSNSRIDFDNIKKFIPNNFALIQ--DILKLIDNIASSREYDSIRWVLEELIDIV 288 Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + D ++ + F+ D YE + ++ + + Sbjct: 289 NNIDSNTIFEQFS-----------FTQNVKSSDNNVKDPYLYFYEDFLAKYDKSLRKNKG 337 Query: 176 DFMTPRDVVHLATA----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP VV+ + +L + T+ D GTG FL + + + Sbjct: 338 VYYTPHSVVNFIVSSLNKILKYNFGLENGFANREEVTVLDFATGTGTFLLEVIKCILKEI 397 Query: 232 SHHKIPPILV--------PHGQELEPETHAVC 255 +G E +AV Sbjct: 398 PKQTGKQKDYINDHILKNIYGFEYLMAPYAVA 429 >gi|238761849|ref|ZP_04622823.1| Cytosine-specific methyltransferase [Yersinia kristensenii ATCC 33638] gi|238699963|gb|EEP92706.1| Cytosine-specific methyltransferase [Yersinia kristensenii ATCC 33638] Length = 826 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 73/257 (28%), Gaps = 36/257 (14%) Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAK 112 + + S F E+++ N+ + I FS + Sbjct: 328 ASFKWVEDKELPSNSAPFCDKEKFRKKYEFNIRQCIGEAIPTQVITNIANKIKFFSK--R 385 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 I + I + Y + + I +IY+ I + Sbjct: 386 KILSSKNIHEIINQ-------YNLTNMDNLITFVKGNWDVINREDIYK--ICELSNAERL 436 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 F T +D+ L D + +P+ G G FL + Sbjct: 437 ETAAFYTSKDICFSVLEKLPDFKKDTI--------RILEPSVGVGNFLPILAKRYEEKKI 488 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 I PE+ A+C E ++ N + L D F +++ Sbjct: 489 IIDCIDI--------NPESLALCRL-----LSEKFISGNIIINYIESDFLLYDRFPQEKY 535 Query: 293 HYCLSNPPFGKKWEKDK 309 + NPP+ K EK+K Sbjct: 536 DLVIGNPPYMKVIEKEK 552 >gi|167855421|ref|ZP_02478187.1| hypothetical protein HPS_04467 [Haemophilus parasuis 29755] gi|167853487|gb|EDS24735.1| hypothetical protein HPS_04467 [Haemophilus parasuis 29755] Length = 214 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 11/147 (7%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + P V+ Y L ++ TP + +L+ P + Sbjct: 70 EEEPQDVLGQCYMKL-----QIANKQRGQCFTPLSTGQVMANMLIAPSE----IDEKGYF 120 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 TL +PTCG+G + + G + L+ Q+++ ++ +C + + + + Sbjct: 121 TLNEPTCGSGALIISFCETLKSQGYN--PQQQLLVIAQDIDLKSVQMCYVQLSLLGISAI 178 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHY 294 + T L+ +R Y Sbjct: 179 IQHANPIANNVIDTYYTPLYLLQRNRY 205 >gi|23099647|ref|NP_693113.1| hypothetical protein OB2192 [Oceanobacillus iheyensis HTE831] gi|22777877|dbj|BAC14148.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 332 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 52/337 (15%), Positives = 101/337 (29%), Gaps = 52/337 (15%) Query: 86 YSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 ++ + N + ++ S + +FE D + K + + S I+ Sbjct: 10 FNWLDKTTENVQQAKNETFLDSLVLTLEMLFEK-DVPENFDDIAKHK----LNQLLSEIK 64 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + + L + + D V L + L + S Sbjct: 65 VSDFQHEEIRKGISLAILKGM----KGSTQQQHLMTPDTVSLIVSYLANKL-----LSSQ 115 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 L+DP GTG LT MN + + + E++P + V ++ Sbjct: 116 KEVALFDPASGTGNLLTAVMNQL---------DKDVAAYAAEVDPTLIGLAVLNANLQEK 166 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 E + +L F + +S+ P G + D A + E K+ E + Sbjct: 167 EVEFF--------HQDSLRP--FLMEPVDIVISDLPVGY-YPDDVSASDYELKSDEGHSY 215 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 LF+ ++ G LF+ ++ +L ++ Sbjct: 216 SHH---------LFIEQSLTYMKEGAYFVGVVPEF-----LFDSDQS---DKLHAFLQKH 258 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 I ++ LP F A + IL + K Sbjct: 259 AHIVGVIRLPESAFKSKQQAKSILILQKKGEATSDPK 295 >gi|306819272|ref|ZP_07452982.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304647938|gb|EFM45253.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 621 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 64/228 (28%), Gaps = 31/228 (13%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ YE L+ S A F TP D + T DP Sbjct: 156 EIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMA----------VQSRDFPAGTWLDPC 205 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRR 270 CG G H+ S+ +++ VA + + + + Sbjct: 206 CGVGNL----AWHLVVAQSNPARFVRENLVLIDVDETALRSAVALLGADFLSGGDHEGLA 261 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 L LSK + + NPP+ + K+ +E F + K Sbjct: 262 QLWAKASNRDFLSKSGLAP--HEFVIVNPPYAR--AKESPGLECAASREYFAYFLEKIAK 317 Query: 331 ISDG-------SMLFLMHL--ANKLELPPNGGGRAAIVLS-SSPLFNG 368 S G S L + + GGR + + LF G Sbjct: 318 TSRGFIAVTPASYLCVPKFAVLRGILEREQPGGRVFVFDNVPDTLFRG 365 >gi|222108974|ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84] gi|221727896|gb|ACM30946.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84] Length = 1693 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 72/274 (26%), Gaps = 60/274 (21%) Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + E + + S TP +V + + + Sbjct: 140 DDIGSDLEDAVGETDYASLARCTQYAHFTPEFIVRAIWS--------ALQRLGWRGGRVL 191 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P GTG F + D G EL+P T + Sbjct: 192 EPGIGTGLFPALMPEALRDLS---------HVTGVELDPVTACIVR------------LL 230 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I G ++ F + NPPF + + A Sbjct: 231 QPRARILTGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY-------- 280 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ + L+ G AA V S +G +S R ++ + A Sbjct: 281 -------FIARSIDLLKP----GAFAAFVTS-----SGTMDKADSSAREYIARTADLIAA 324 Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 + LP F T++ + RK E G Sbjct: 325 IRLPEGSFRADAGTDVVVDILFFRKRKVAEPEGN 358 >gi|319647043|ref|ZP_08001269.1| endonuclease and methylase LlaGI [Bacillus sp. BT1B_CT2] gi|317390867|gb|EFV71668.1| endonuclease and methylase LlaGI [Bacillus sp. BT1B_CT2] Length = 1570 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 69/250 (27%), Gaps = 25/250 (10%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 D + + RLE Y+ + + + D ++ +Y+ + Sbjct: 809 DAVLNVMDKQGLMKEQERLEN---FYESVRVRAEGIDNLKAKQDIII-QLYDKFFKIGFR 864 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHV 227 E +E TP +VV + D F K + DP GTG F+ + Sbjct: 865 ETTERLGIVFTPVEVVDFIIHSVEDVLKKHFGKSISDEGVHILDPFTGTGTFIVRLIQSG 924 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTL---- 282 H E+ ++ + + N I T Sbjct: 925 LISKEDLLRKYTQELHANEIILLSYYIAAINIEETFHSIMKGDYTPFNGIVLTDTFESTE 984 Query: 283 SKDLFTGKRFH---------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +D F + F + NPP+ + + D E GR Sbjct: 985 KEDSFEDELFGENNERLERQRKEPIFAIIGNPPYSARQRSENDNNENVAYPILEGRIADT 1044 Query: 328 LPKISDGSML 337 K S + L Sbjct: 1045 YAKYSKANAL 1054 >gi|260438308|ref|ZP_05792124.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876] gi|292809330|gb|EFF68535.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876] Length = 2481 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 86/325 (26%), Gaps = 73/325 (22%) Query: 117 DFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164 + D T+ ++E L + F G + E+ L+ Sbjct: 876 NIDAICTLKQIEAENRLATQEEQTVLSKFVGWGGLSQAFDENNAGWTREYAELKELLSDE 935 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T ++ + L+ + + +P+ G G F Sbjct: 936 EYSAARATVNNAFYTSPEIAMCINSALV--------QFGFKGGNVLEPSMGIGNFFGSMP 987 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL+ + + + + NI + Sbjct: 988 APMQQSK----------LYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1024 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D + + + Sbjct: 1025 TTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FLA 1064 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A++ + L IR++L E + + LP F T Sbjct: 1065 KALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1119 Query: 402 NIATYLWILSN--RKTEERRGKVQL 424 + + L RK + V L Sbjct: 1120 EVTADILFLQKRERKIDIEPDWVHL 1144 >gi|255009084|ref|ZP_05281210.1| putative DNA methylase [Bacteroides fragilis 3_1_12] gi|313146833|ref|ZP_07809026.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135600|gb|EFR52960.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1659 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYDYAIEKD 153 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++GM++ L + + T+ + F F Sbjct: 154 F-------------------ISGMILSLLHENTLTRTAA----FETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K G + I + F+ + N GG Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|119714077|ref|YP_919219.1| putative type II DNA modification enzyme [Nocardioides sp. JS614] gi|119525986|gb|ABL79356.1| putative type II DNA modification enzyme [Nocardioides sp. JS614] Length = 1331 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 55/225 (24%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-FSGIELHPDTVPDR------VMSNIY 159 F+ A + +RL A LL + + P + D + +IY Sbjct: 370 FAPTAADVLAG-------SRLPNAALLTAVRSLAVVQPKGQPQRLVDFAHLGAEELGSIY 422 Query: 160 EHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 E L+ + + + TP ++V L LDP +++ Sbjct: 423 ESLLELVPRHDPTTHAFTLETLAGNDRKTSGSYYTPTELVELVLDTALDPVLDDAEKNAH 482 Query: 205 MIR---------TLYDPTCGTGGFLTDAMNHVA----------------DCGSHHKIPPI 239 + DP+ G+ FL A +A Sbjct: 483 TTEEAEAALLGLRVCDPSVGSAHFLVAAARRIATRLATVRTGEVDPTPTAYSDAMHDVVA 542 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLS 283 +G ++ P + + + + P L +I+ G+ L Sbjct: 543 RCVYGIDINPMAADLAKVSLWLTAMSPGRPLSFLDHHIKVGNALL 587 >gi|225378233|ref|ZP_03755454.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM 16841] gi|225209896|gb|EEG92250.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM 16841] Length = 2481 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 85/325 (26%), Gaps = 73/325 (22%) Query: 117 DFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVP--DRVMSNIYEHLIR----- 164 + D T+ ++E L + + F G + S Y L Sbjct: 876 NIDAIRTLKQIEAENRLARPKEQTVLSKFVGWGGLSQAFDENNAAWSKEYAELKELLSDE 935 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T ++ + L+ + + +P+ G G F Sbjct: 936 EYSAARATVNNAFYTSPEIATCINSALV--------QFGFKGGNVLEPSMGIGNFFGSM- 986 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +G EL+ + + + + NI + Sbjct: 987 ---------PAPMQQSRLYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1024 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D + + + Sbjct: 1025 TTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FLA 1064 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A++ + L IR++L E + + LP F T Sbjct: 1065 KALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1119 Query: 402 NIATYLWILSN--RKTEERRGKVQL 424 + + L RK + V L Sbjct: 1120 EVTADILFLQKRERKIDIEPDWVHL 1144 >gi|282933140|ref|ZP_06338527.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1] gi|281302644|gb|EFA94859.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1] Length = 332 Score = 46.5 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 43/351 (12%) Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 + NL A E+ + + + K + + + M Sbjct: 18 LQKNLNVPFAGAVTETFDNLENGKIKVEMGA-PDKETVALLSKKYQELNYDKLPSTQKYM 76 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ L + E TP V+ A++ D K + DP G Sbjct: 77 --VFTLLTLKAMKEDGRNYSQMPTP-PVLATVVAMVWD------KLITKTELAVVDPAIG 127 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 TG L + H G + + + G + + D Sbjct: 128 TGSLL---YTVIDQLVQSHHSQNKYRLAGIDNDESMLDLADVGAHLSNYKIDL------- 177 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 L + ++ +S+ P G +++ KN F + +G Sbjct: 178 -YCQDALEN--WLIEKPDVIVSDLPVG------YYPIDENAKN-----FA---TQAKEGH 220 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L + G A +++ +S L G E WL + ++A+V LP Sbjct: 221 SLAHELLVEQTIKNLAPAGYAFLLVPNSLL--GGKLGAEFMP--WLAKKVYLQAVVQLPN 276 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444 DLF L + N + V L L + +K Sbjct: 277 DLFQNPLNQKSLLVFQNHGEGAQSRDVLLAKLGSLREEKSLVDFNQKLNEW 327 >gi|256851410|ref|ZP_05556799.1| adenine-specific DNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260660831|ref|ZP_05861746.1| adenine-specific DNA methylase [Lactobacillus jensenii 115-3-CHN] gi|297206223|ref|ZP_06923618.1| possible DNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256616472|gb|EEU21660.1| adenine-specific DNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260548553|gb|EEX24528.1| adenine-specific DNA methylase [Lactobacillus jensenii 115-3-CHN] gi|297149349|gb|EFH29647.1| possible DNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 332 Score = 46.5 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 43/351 (12%) Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 + NL A E+ + + + K + + + M Sbjct: 18 LQKNLNVPFAGAVTETFDNLENGKIKVEMGA-PDKETVALLSKKYQELNYDKLPSTQKYM 76 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 ++ L + E TP V+ A++ D K + DP G Sbjct: 77 --VFTLLTLKAMKEDGRNYSQMPTP-PVLATVVAMVWD------KLITKTELAVVDPAIG 127 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 TG L + H G + + + G + + D Sbjct: 128 TGSLL---YTVIDQLVQSHHSQNKYRLAGIDNDESMLDLADVGAHLSNYKIDL------- 177 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 L + ++ +S+ P G +++ KN F + +G Sbjct: 178 -YCQDALEN--WLIEKPDVIVSDLPVG------YYPIDENAKN-----FA---TQAKEGH 220 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L L + G A +++ +S L G E WL + ++A+V LP Sbjct: 221 SLAHELLVEQTIKNLAPAGYAFLLVPNSLL--GGKLGAEFMP--WLAKKVYLQAVVQLPN 276 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444 DLF L + N + V L L + +K Sbjct: 277 DLFQNPLNQKSLLVFQNHGEGAQSRDVLLAKLGSLREEKSLVDFNQKLNEW 327 >gi|322691082|ref|YP_004220652.1| hypothetical protein BLLJ_0892 [Bifidobacterium longum subsp. longum JCM 1217] gi|320455938|dbj|BAJ66560.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 932 Score = 46.5 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 75/291 (25%), Gaps = 77/291 (26%) Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175 + D L A + + G + + + ++ E + + Sbjct: 274 DRIDVPPLTGELRDA-----LLEISEGFDW--SGISPVIFGSLMEETLSH---DERRKGG 323 Query: 176 DFMTP-RDVVHLATALLLDPDDALFKESPG-------------------MIRTLYDPTCG 215 T +++ L L LD A + + DP CG Sbjct: 324 MHYTSVKNIHRLIDPLFLDGLKAELEGAEARPVAGGSRTNALNKLHDKIAGLRFLDPACG 383 Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL--------------------VPHGQELEPETHAVC 255 +G FLT+ + + HG E+ AV Sbjct: 384 SGNFLTETYLELRRIENRILADLDKDGQLALDLGDDINPVKVSISHFHGIEINGFACAVA 443 Query: 256 VAGMLIRRLESDPRRDL------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPP 300 + I ++ + + +IQQG+ L D G Y + NPP Sbjct: 444 RTALWIAEQQALDDTESTISGLPRLPFTDTAHIQQGNALRLDWNELLPGDHCDYVMGNPP 503 Query: 301 FG---KKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFL 339 F K D ++ G R D + F+ Sbjct: 504 FIGHVTKTAGQTDDLKTVWGRQYDGYLDYATGWYRKAASYLSKPDAAFAFV 554 >gi|319935365|ref|ZP_08009803.1| helicase domain-containing protein [Coprobacillus sp. 29_1] gi|319809773|gb|EFW06174.1| helicase domain-containing protein [Coprobacillus sp. 29_1] Length = 3184 Score = 46.5 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 47/320 (14%), Positives = 95/320 (29%), Gaps = 65/320 (20%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-H 161 + N KAI ++ + +A E+ +L + S + T P+ + Sbjct: 1609 EKYKANVKAIQLLKELEIEHRLATPEEQEILSRFVGWGSLADAFDQTKPNWKNEYLELKD 1668 Query: 162 LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ +++ + F TP V+ + + +P+CG G F Sbjct: 1669 LLNDKQYRAARESTLTAFYTPPIVIQSIYH--------KLSDMGLKTGNILEPSCGIGHF 1720 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 N +G EL+ + + + I Sbjct: 1721 FGMKPN-----------DMDCHFYGVELDEISGKIAQ------------HLYQNATIAIQ 1757 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 F + N PFG+ D + + + F Sbjct: 1758 -PFENTDVPDNLFDAVVGNVPFGQIPIHDPRYNKNKFMIHDY----------------FF 1800 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 +K++ IV+ + F + S++R+++ + + V LP + F Sbjct: 1801 AKALDKVKTG-------GIVILLTSKFTMDKQN--SDVRKYIAQRAELLGAVRLPDNTFM 1851 Query: 400 R---TNIATYLWILSNRKTE 416 T I + + IL R+ Sbjct: 1852 NNAGTRITSDILILQKRERP 1871 >gi|114777159|ref|ZP_01452170.1| adenine specific DNA methyltransferase [Mariprofundus ferrooxydans PV-1] gi|114552304|gb|EAU54787.1| adenine specific DNA methyltransferase [Mariprofundus ferrooxydans PV-1] Length = 654 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 57/398 (14%), Positives = 111/398 (27%), Gaps = 97/398 (24%) Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125 + L++F + S L L + +++ I + DN +F D + + Sbjct: 227 DDTLDTFSRQEAAELIPKSNPFLRKLFNHVAGADIDERIKTTVDNLADVFRATDVKALLK 286 Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 +A + +F YE + + ++ + + TP VV Sbjct: 287 NFGRATQTHDPIIHF------------------YETFLAEYDPKLRKARGVWYTPEPVVS 328 Query: 186 LATALLLDPDDALFKESPGMIRT----------------------------------LYD 211 + + F G+ T + D Sbjct: 329 FIVRGVDEILKTEFALKDGLADTSKTTIEVQVQGAAISKGRNKGKPLIQKKEVHKVQVLD 388 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAVC--VAGML 260 P GTG FL + + + + + L P ++A+ ML Sbjct: 389 PATGTGTFLAEVVKFIYNGKFKAMQGAWSSYVDEHLIPRLNGFELLMASYAMAHLKLDML 448 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFT----------------------GKRFHYCLSN 298 +R ++ NI ++L ++ + N Sbjct: 449 LRDTGFVANKEQRLNIYLTNSL-EEHHPDTGTLFSSWLSTEANEANHIKRDTPVMVVMGN 507 Query: 299 PPFGKKWEKDKDAVEKEHKN-----GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+ + + + K ++ G + PK + + M + NG Sbjct: 508 PPYSGESANKGEWIMKLMEDYKKEPGGKEKLKERNPKWINDDYVKFMRYGQHF-IEKNGE 566 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390 G A + L N +R LL+ D I I Sbjct: 567 GILAFINPHGFLDNPTFRG----MRWNLLKTYDKIYTI 600 >gi|260494189|ref|ZP_05814320.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260198335|gb|EEW95851.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 474 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 59/391 (15%), Positives = 133/391 (34%), Gaps = 48/391 (12%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD-----AMNH 226 + TP ++V+L + + K + + + +CG G FL Sbjct: 2 KKNGVVYTPENIVNLLLKEVDYNGKKILK------KHVMENSCGDGAFLIKIVEKYCEEF 55 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKD 285 + K+ L + +E + V + + S K +I QG++L Sbjct: 56 LLTNSDIDKLVLELEKYIHGIEIDKIEVEKTKKNLDNIISKFTPKKVKWDINQGNSLLIK 115 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + + Y + NPP+ + + ++D + K +FG D + F N Sbjct: 116 KY-DNKMDYVIGNPPYIRIHDLNEDNIA--IKKLNFSKFGMT-----DLFIAFFEIGINM 167 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIA 404 L G+ + +S F +AGS E R +++E ++ I+ L F Sbjct: 168 LSK----NGKLVYITPNSF-FTSKAGS---EFRNYIIEKKILTKILNLKHYKAFKNITTY 219 Query: 405 TYLWILSNRKT---------EERRGKVQ-----LINATDLWTSIRNEGKKRRIIN--DDQ 448 T + +L + + + + IN + + I+N + Sbjct: 220 TTITVLDKKNKNNFLQYNEYQNEKNLILNYDDIFINDCYYFAEKETLKDLKNILNYKESS 279 Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE--ADITWRK 506 ++ +LD+ S + F ++ + + ++ S K + + ++ Sbjct: 280 KKNLLDVKNGFATLADSIFIS-DDFLFKSKYIYKAIKASTNQIKKIIFPYDSSFNLVDFN 338 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537 L +L+ K +++ ++ + Sbjct: 339 LFEKDLQKYLENNKKLLENRSLEKNSKWYEF 369 >gi|227891625|ref|ZP_04009430.1| adenine-specific methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227866541|gb|EEJ73962.1| adenine-specific methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 339 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 122/369 (33%), Gaps = 44/369 (11%) Query: 85 EYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 EYSL + NL++ Y+ + + + I ++ + + K+ + ++ Sbjct: 11 EYSLLEGAVKELQKNLQTTYLDALIETLENILDNNQVHVEDDK-PDKKTVAKLKELYADS 69 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + + + + LI + SE A MTP + + + L+ Sbjct: 70 NI--KNLETDEKRQVIQLLILKSYSEDKIQANHQMTPDSIGMIVSYLI------ELFADS 121 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + T+ D GTG LTD N++ + + +G + + A+ Sbjct: 122 KKVLTITDICVGTGNLLTDIYNNLDKQNKNIQ------AYGIDNDDTLLALA-------- 167 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 S + +NI+ + + + + + P G + D V G Sbjct: 168 --SISTQFQKQNIELYHQDAIEELLIPKTDLVVGDLPVG--YYPIDDKVSDYITKNNDG- 222 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 S + + +L+ I + +F ++ +++ + Sbjct: 223 -------HSYAHYVLIEKSIRQLKEDG-----IGIFIVPRGIFE---VKDSVKLLKYIQK 267 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 ++ ++ LPT+LF + I+ + + ++ + L+ + K Sbjct: 268 VGYLQGLLNLPTELFNDKQSMKSILIVQKKGNKAKQAEEVLLGDFPSFKKQEEFKKFINE 327 Query: 444 INDDQRRQI 452 I ++ I Sbjct: 328 IVSWAKKNI 336 >gi|269839667|ref|YP_003324359.1| hypothetical protein Tter_2649 [Thermobaculum terrenum ATCC BAA-798] gi|269791397|gb|ACZ43537.1| protein of unknown function DUF559 [Thermobaculum terrenum ATCC BAA-798] Length = 1712 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 37/141 (26%), Gaps = 27/141 (19%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----------TLYDPTCGTGG 218 + + TP +V L+P + G R + DP G+G Sbjct: 476 SERKQTGSYYTPPSLVRQLIKTALEPVIEQRLKEAGHDRQRQEEALLNLRVCDPASGSGH 535 Query: 219 FLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 FL A + + + + P +C + I Sbjct: 536 FLLAAARRIARELARVRTGEEEPSPQAYRQALRDVIRECIYAVDKNPLAVDLCKVALWIE 595 Query: 263 RLESDPRRDLSKN-IQQGSTL 282 + N I+ G +L Sbjct: 596 GYNTGMPLSFLDNHIKCGDSL 616 >gi|85858206|ref|YP_460409.1| type II restriction enzyme, methylase [Syntrophus aciditrophicus SB] gi|85721297|gb|ABC76240.1| type II restriction enzyme, methylase [Syntrophus aciditrophicus SB] Length = 1242 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 57/213 (26%), Gaps = 63/213 (29%) Query: 208 TLYDPTCGTGGFLTDAMNHVA--------------------DCGSHHKIPPILVPHGQEL 247 + DP CG+G FL + + D HG +L Sbjct: 530 KVVDPACGSGAFLIQTLERLKREHRWVADETDRIVGLAELWDQDVVINDILANNLHGVDL 589 Query: 248 EPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGKR--------------- 291 E+ + + + P L +NI+ G++L F R Sbjct: 590 NAESVEITKLALWMHTASAGKPLSSLDRNIRCGNSLVGPDFYANRQPDLFSEDERERINA 649 Query: 292 ---------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-----KI 331 F + NPP+ K + + + R G P + Sbjct: 650 FDWKETFPGIFDQGGFDCVIGNPPY-VKLQNFRRVQSSVAEYLLEARRADGAPLYASTRT 708 Query: 332 SDGS--MLFLMHLANKLELPPNGGGRAAIVLSS 362 + + F+ + L GR + + Sbjct: 709 GNFDLYLPFIEKGLDLLRPD----GRMGYIAPN 737 >gi|326445423|ref|ZP_08220157.1| hypothetical protein SclaA2_30352 [Streptomyces clavuligerus ATCC 27064] Length = 436 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 80/255 (31%), Gaps = 47/255 (18%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + Y+ L E +G TP V L L L+P + + Sbjct: 114 DGYALGDTYQLL----SEEARKGRALCQTPPWVARLLLRLSLEPAMEEWG---PADVRMI 166 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHK------------IPPILVPHGQELEP-----ETHA 253 DP CGTG A + S + + G +L+P + Sbjct: 167 DPACGTGHIAVAAFHMARVATSGGRGSHPGWGGPRAVERALAAVSGVDLDPYAAALTAYR 226 Query: 254 VCVAGMLIRRLESDPRRDLSK-NIQQGSTLSK---DLFTGKRFHYCLSNPPFGK-KWEKD 308 + + + L D N+ +L L +H C++NPP+ K Sbjct: 227 LLSSSASVLGLSLDRVPASWPVNVAVADSLLDRAEPLLAAGAYHACVANPPYITPKDPAV 286 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + V + +G++ LP F + +L +P GG A + Sbjct: 287 RGQVRAAYPQVAVGKYSLSLP--------FTALMLERLAVP---GGFVAQL-------TS 328 Query: 369 RAGSGESEIRRWLLE 383 A RR++ E Sbjct: 329 NAFMKREFGRRYITE 343 >gi|218134673|ref|ZP_03463477.1| hypothetical protein BACPEC_02576 [Bacteroides pectinophilus ATCC 43243] gi|217990058|gb|EEC56069.1| hypothetical protein BACPEC_02576 [Bacteroides pectinophilus ATCC 43243] Length = 359 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 70/266 (26%), Gaps = 61/266 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F T ++ + L+ + + +P+ G G F Sbjct: 26 EEYSAARATVNNAFYTSPEIAMCINSALV--------QFGFKGGNVLEPSMGIGNFFGSM 77 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+ + + + + NI + Sbjct: 78 PAPMQQSK----------LYGVELDSISGRIAK------------QLYQNANI-SITGFE 114 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG D + + + Sbjct: 115 NTTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FL 154 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A++ + L IR++L E + + LP F Sbjct: 155 AKALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAG 209 Query: 401 TNIATYLWILSN--RKTEERRGKVQL 424 T + + L RK + V L Sbjct: 210 TEVTADILFLQKRERKIDIEPDWVHL 235 >gi|254393866|ref|ZP_05008973.1| DNA methylase [Streptomyces clavuligerus ATCC 27064] gi|197707460|gb|EDY53272.1| DNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 440 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 80/255 (31%), Gaps = 47/255 (18%) Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + Y+ L E +G TP V L L L+P + + Sbjct: 118 DGYALGDTYQLL----SEEARKGRALCQTPPWVARLLLRLSLEPAMEEWG---PADVRMI 170 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHK------------IPPILVPHGQELEP-----ETHA 253 DP CGTG A + S + + G +L+P + Sbjct: 171 DPACGTGHIAVAAFHMARVATSGGRGSHPGWGGPRAVERALAAVSGVDLDPYAAALTAYR 230 Query: 254 VCVAGMLIRRLESDPRRDLSK-NIQQGSTLSK---DLFTGKRFHYCLSNPPFGK-KWEKD 308 + + + L D N+ +L L +H C++NPP+ K Sbjct: 231 LLSSSASVLGLSLDRVPASWPVNVAVADSLLDRAEPLLAAGAYHACVANPPYITPKDPAV 290 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + V + +G++ LP F + +L +P GG A + Sbjct: 291 RGQVRAAYPQVAVGKYSLSLP--------FTALMLERLAVP---GGFVAQL-------TS 332 Query: 369 RAGSGESEIRRWLLE 383 A RR++ E Sbjct: 333 NAFMKREFGRRYITE 347 >gi|148927825|ref|ZP_01811249.1| type IIS restriction endonuclease, putative [candidate division TM7 genomosp. GTL1] gi|147886828|gb|EDK72374.1| type IIS restriction endonuclease, putative [candidate division TM7 genomosp. GTL1] Length = 1093 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 59/198 (29%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIA-------RLEKA--GLLYKICKNFSGIELHPDTVP 151 Y+ FS + + F + + + L+ + + ++ + Sbjct: 274 YLNGGLFSPDVDD---HYKFDRALQSSVPGLVDVPDSWLRKLFDLLELYNFTVDENTSYD 330 Query: 152 DR------VMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATAL----------- 190 ++ I+E+L+ R E E F TPR++V Sbjct: 331 IDLSIDPEMLGRIFENLLARINPETGETVRNTTGSFYTPREIVEYMVDQSLKEYLTLQTS 390 Query: 191 -------------LLDPDDALFKESPGM-------IRTLYDPTCGTG----GFLTDAMNH 226 LLD ++ +S + DP CG+G G L + Sbjct: 391 ISEEKLDSLISFDLLDDEEYPLADSEKQRVIDALSNIKILDPACGSGAFPIGVLQKIVFM 450 Query: 227 VADCGSHHKIPPILVPHG 244 + + G Sbjct: 451 LQQVDPDSRQWLDKQLSG 468 >gi|319757742|gb|ADV69684.1| hypothetical protein SSUJS14_0589 [Streptococcus suis JS14] Length = 1982 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 59/261 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T ++ + + DP+ GTG F Sbjct: 669 KEYSDMKQSSLTAYYTDPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAM 720 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 H+ + +G EL+ T A+ + I+ T+ Sbjct: 721 PKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV- 760 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F +SN PF + R+ D + + Sbjct: 761 --AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFV 797 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K + GG+ AI+ G I + + E V LP F Sbjct: 798 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAG 852 Query: 401 TNIATYLWILSNRKTEERRGK 421 T++ T + +E Sbjct: 853 TSVTTDMLFFQKHLNKEYVAD 873 >gi|288800631|ref|ZP_06406089.1| DNA modification methylase [Prevotella sp. oral taxon 299 str. F0039] gi|288332844|gb|EFC71324.1| DNA modification methylase [Prevotella sp. oral taxon 299 str. F0039] Length = 1170 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 91/341 (26%), Gaps = 96/341 (28%) Query: 19 AEDLWGDFKHTDFGKVI---LP-FTLLRRL-----------ECALEPTRSAVREKYLAFG 63 + L G+ K+ + L L+ L E A +K + Sbjct: 192 CDFLTGNTKNN--RDYVKKLLGRLVFLQFLQKKGWMGVPASSKTWEGGDKAYMQKLVEHY 249 Query: 64 GSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLE-SYIAS--FSDNAKAIFEDFD 119 N V F+NT +E + + T N++ Y+ F +A + D Sbjct: 250 KDN--ERLLSDVLEPLFFNTLNESRPNNIVDTRLGKNIKIPYLNGGLFDKDALDS-RNID 306 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV---------MSNIYEHLIRRFGSEV 170 F + ++ + FS D + +I+E+L+ E Sbjct: 307 FPYSY--------FQELMEFFSEYNFTIDENDPDDAEVGIDPEMLGHIFENLL-----ED 353 Query: 171 SEGAEDFMTPRDVVHLA-----TALLLDPDDALFKESPGM-------------------- 205 ++ F TP+++V L + + Sbjct: 354 NKDKGAFYTPKEIVQYMCKESIVQYLTTHAEEKLHNAIRKLIVEGIVCPELQTKVVANKI 413 Query: 206 -----IRTLYDPTCGTGGFLTDAMNHVA----------------DCGSHHKIPPILVPHG 244 + DP G+G F A+N + + G Sbjct: 414 YDLLKSVKICDPAIGSGAFPMGALNVLYHTRRVLFGFLKSSENFSHAQVKREIIQQNIFG 473 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGST 281 ++E + + + + N I G++ Sbjct: 474 VDIEQGAVDIARLRFWLALVVDETEPQPLPNLDYKIMCGNS 514 >gi|154149046|ref|YP_001405769.1| Cpp14 [Campylobacter hominis ATCC BAA-381] gi|153805055|gb|ABS52062.1| Cpp14 [Campylobacter hominis ATCC BAA-381] Length = 2117 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 63/431 (14%), Positives = 130/431 (30%), Gaps = 69/431 (16%) Query: 136 ICKNFS-----GIELHPDTVPDRVMSNIYEHLI--RRFGSEVSEGAEDFMTPRDVVHLAT 188 I F+ + + + + ++L+ + + TP + Sbjct: 408 IISQFTGWGGVSESFDENNQNFKQENTLLKNLLTEEEYKEAKETITNAYFTP----QILV 463 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 + + + S + + +P+ G+G FL N + Sbjct: 464 NTIHKALNEMGINSDNNKKRVLEPSAGSGAFLKPNPNF-EYLTIEKNHLSSDMLSLLFPN 522 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 + +A+ ++NI +F + NPPFG+ D Sbjct: 523 QKHYAMGYED-----------DLANQNI-------------TKFDAIIGNPPFGEIAIID 558 Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 K+ KE +P++S + ++ L+ G A V+S+ L Sbjct: 559 KNRALKED-----------IPRMSLHNFFAAKSASHMLKDD----GIMAFVISTKFL--- 600 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 S RR++ V LP + F T+ +T + K Sbjct: 601 --DSKTDTTRRYIDNYATFLGAVRLPENTFDSTHSSTDIVFFKKGKDLNLN--------- 649 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 + W ++ N +IIN+ + +I + E S + + + L Sbjct: 650 NNWLNVENFKDTNQIINNYFIQNPNNILGNLEIKIRSHGEELVCTKNSNLNLENELNRFV 709 Query: 489 ILDKTGLARLEADITWRKLSP-LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547 + + + T L + + K + Q Y E ++K+ +N Sbjct: 710 ETLPKNIYKFHKNETKINDEIYLDEIIDANYYKDLKQNNYFIFNNEIYIKKGEINNANGI 769 Query: 548 LKVKASKSFIV 558 L A+K + Sbjct: 770 L---ATKPELK 777 >gi|86142928|ref|ZP_01061350.1| type IV site-specific deoxyribonuclease Eco57I related protein [Leeuwenhoekiella blandensis MED217] gi|85830373|gb|EAQ48832.1| type IV site-specific deoxyribonuclease Eco57I related protein [Leeuwenhoekiella blandensis MED217] Length = 1026 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 99/369 (26%), Gaps = 95/369 (25%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--------------EGA 174 +L K S + + + + + +I+EH + + + Sbjct: 314 DDEILIDDLKKLSTYDFNTEVDVNI-LGHIFEHSLNEIEEVTAEIEGTVSDQKRTKRKKD 372 Query: 175 EDFMTPRDVVHLAT----------------------ALLLDPDDALFKESPGMIRT---- 208 F TP+ + D + Sbjct: 373 GVFYTPKYITTYIVANTIGKLCIDKRKELDIEEIEYDDSFLKKDKTLTVKGKKLFKTLTD 432 Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH------------------KIPPILV 241 + DP CG+G FL A+N + + K Sbjct: 433 YKNWLTNLKIIDPACGSGAFLNQALNFLIEEHEKIDDIIADLTNSPLRLFDTDKNILENN 492 Query: 242 PHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSK---DLFTGKR------ 291 G ++ E+ + + +R + D L+ NI+ G++L D Sbjct: 493 LFGVDINEESVEIAQLSLWLRTAKKDRKLSKLNNNIKCGNSLLASEFDWHKEFPNIMKNG 552 Query: 292 -FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F + NPP+ K+ G+ L+ A L++ Sbjct: 553 GFDVVIGNPPYIKEATNKSAFDGLHDHPCYQGKMD-----------LWYFFGALALDIIK 601 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWI 409 G + ++ + N A S+ R +L I + +F I T ++I Sbjct: 602 KDYGLIGYIAPNNWITNDGA----SKFRNIVLNKGKITEFIDFGDFKVFDSAGIQTMIYI 657 Query: 410 LSNRKTEER 418 + + Sbjct: 658 MQRSDNNKN 666 >gi|124262646|ref|YP_001023116.1| adenine specific DNA methyltransferase, putative [Methylibium petroleiphilum PM1] gi|124261892|gb|ABM96881.1| adenine specific DNA methyltransferase, putative [Methylibium petroleiphilum PM1] Length = 1615 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 51/385 (13%), Positives = 97/385 (25%), Gaps = 53/385 (13%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCG 215 N+Y+ V+E TP VV + F S L DP G Sbjct: 841 NLYDTFFGSAFPRVAERLGIVYTPIPVVDFIIRSIEVALRRHFDASISDEGVQLLDPFTG 900 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 TG F + K + H E+ + + + + Sbjct: 901 TGTFPVRLLQLGLIRPKALKRKYLSELHANEIVLLAYYIATINIESAFFAVAGEHLPFEG 960 Query: 276 IQQGSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 I T + SNPP+ + + + D + E Sbjct: 961 IVLTDTFQLNEPSQGDVEGGFSIENSSRAKKQRQQPIRVVFSNPPYSAQQDSEGDNNKNE 1020 Query: 316 HKNGELGR-FGPGLPKISDGSMLF------LMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 R + + LF + G A V + S L Sbjct: 1021 DYPLLDERIASTYVARSKRK--LFKNMYDSYVRAIRWASDRIADRGVVAFVTNGSFLKAP 1078 Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428 +R L+E+ ++L++ + R + +G+++ Sbjct: 1079 NLDG----VRLGLVED-------------------FSHLYVFNCRGSALGQGEIRRKEGG 1115 Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 ++ ++ D R Q + G + R + Sbjct: 1116 GIFREGSKTQVAITVLVKDPRHQGPSELHYYDIGDYLTTEQKLDAIERLGSIESVPWSRL 1175 Query: 489 ILDKTGLARLEADITWRKLSPLHQS 513 ++ G ++D + PL Sbjct: 1176 QPNEDGDWAEQSDPKFATFLPLGDK 1200 >gi|167647764|ref|YP_001685427.1| helicase-like protein [Caulobacter sp. K31] gi|167350194|gb|ABZ72929.1| helicase-like protein [Caulobacter sp. K31] Length = 1176 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 7/112 (6%) Query: 122 STIARLEKAGL-LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 IA L + L++ F I+ ++ YE + F ++ E + TP Sbjct: 306 RAIATLNRVDRPLFRSRMTFPTIDG---ETSIAAITYFYEPFLEAFDPKLREDLGVWYTP 362 Query: 181 RDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVAD 229 ++V + + G + DP CGTG +L + +A+ Sbjct: 363 PEIVRYQVRRVHHLLKTELGRARGLADPDVIVLDPCCGTGAYLLEVARCIAE 414 >gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tuberculosis SUMu007] gi|308345340|gb|EFP34191.1| helicase [Mycobacterium tuberculosis SUMu007] Length = 1603 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 821 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 880 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 881 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 940 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 941 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1000 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1001 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1060 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1061 GYIDGNTADG 1070 >gi|260187001|ref|ZP_05764475.1| helicase [Mycobacterium tuberculosis CPHL_A] gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tuberculosis CPHL_A] gi|289420602|gb|EFD17803.1| helicase [Mycobacterium tuberculosis CPHL_A] Length = 1606 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|219557991|ref|ZP_03537067.1| helicase [Mycobacterium tuberculosis T17] gi|260201132|ref|ZP_05768623.1| helicase [Mycobacterium tuberculosis T46] gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tuberculosis T46] gi|289570133|ref|ZP_06450360.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289416440|gb|EFD13680.1| helicase [Mycobacterium tuberculosis T46] gi|289543887|gb|EFD47535.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 1606 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|215430948|ref|ZP_03428867.1| helicase [Mycobacterium tuberculosis EAS054] gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tuberculosis EAS054] gi|289694719|gb|EFD62148.1| helicase [Mycobacterium tuberculosis EAS054] Length = 1606 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|215427390|ref|ZP_03425309.1| helicase [Mycobacterium tuberculosis T92] gi|289750611|ref|ZP_06509989.1| helicase [Mycobacterium tuberculosis T92] gi|289691198|gb|EFD58627.1| helicase [Mycobacterium tuberculosis T92] Length = 1161 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990404|ref|YP_002645091.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo 172] gi|121493557|emb|CAL72031.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773517|dbj|BAH26323.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo 172] Length = 1606 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycobacterium bovis AF2122/97] gi|31618798|emb|CAD96902.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] Length = 1606 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|88800890|ref|ZP_01116443.1| hypothetical protein MED297_00010 [Reinekea sp. MED297] gi|88776335|gb|EAR07557.1| hypothetical protein MED297_00010 [Reinekea sp. MED297] Length = 250 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 17/179 (9%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 +L+++ K ++ + + D D + +Y L + F TP V + + Sbjct: 61 VLFELGKQYAEMVIEADPFSDL-LGLVYMEL---GSEYGKKRMGQFFTPDAVSTMCAEMT 116 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 P + TL +P G G L + + L Sbjct: 117 AP----YSLTEPDRLHTLLEPASGAGSMLLVYVRVWLSRFHRVDNLGVYAVDLDSLCARM 172 Query: 252 HAV-CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 A+ ++ L+ + + QG+ L+ L+ P + ++ Sbjct: 173 TALQLLSNCLVHPYDLGEIV-----VYQGNALADP---DCWCRIVLATLPAHFERSDER 223 >gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosis CDC1551] gi|215404161|ref|ZP_03416342.1| helicase [Mycobacterium tuberculosis 02_1987] gi|215446243|ref|ZP_03432995.1| helicase [Mycobacterium tuberculosis T85] gi|218753743|ref|ZP_03532539.1| helicase [Mycobacterium tuberculosis GM 1503] gi|253798919|ref|YP_003031920.1| helicase [Mycobacterium tuberculosis KZN 1435] gi|254364844|ref|ZP_04980890.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551049|ref|ZP_05141496.1| helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554192|ref|ZP_06443402.1| helicase [Mycobacterium tuberculosis KZN 605] gi|289746023|ref|ZP_06505401.1| helicase [Mycobacterium tuberculosis 02_1987] gi|289758143|ref|ZP_06517521.1| helicase [Mycobacterium tuberculosis T85] gi|289762180|ref|ZP_06521558.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294996965|ref|ZP_06802656.1| helicase [Mycobacterium tuberculosis 210] gi|297634601|ref|ZP_06952381.1| helicase [Mycobacterium tuberculosis KZN 4207] gi|297731589|ref|ZP_06960707.1| helicase [Mycobacterium tuberculosis KZN R506] gi|306780045|ref|ZP_07418382.1| helicase [Mycobacterium tuberculosis SUMu002] gi|306784792|ref|ZP_07423114.1| helicase [Mycobacterium tuberculosis SUMu003] gi|306789151|ref|ZP_07427473.1| helicase [Mycobacterium tuberculosis SUMu004] gi|306793485|ref|ZP_07431787.1| helicase [Mycobacterium tuberculosis SUMu005] gi|306797869|ref|ZP_07436171.1| helicase [Mycobacterium tuberculosis SUMu006] gi|306803749|ref|ZP_07440417.1| helicase [Mycobacterium tuberculosis SUMu008] gi|306968146|ref|ZP_07480807.1| helicase [Mycobacterium tuberculosis SUMu009] gi|313658922|ref|ZP_07815802.1| helicase [Mycobacterium tuberculosis KZN V2475] gi|5042237|emb|CAB44655.1| hypothetical protein RvD1-Rv2024c' [Mycobacterium bovis BCG] gi|13881753|gb|AAK46361.1| helicase, putative/conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|134150358|gb|EBA42403.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|253320422|gb|ACT25025.1| helicase [Mycobacterium tuberculosis KZN 1435] gi|289438824|gb|EFD21317.1| helicase [Mycobacterium tuberculosis KZN 605] gi|289686551|gb|EFD54039.1| helicase [Mycobacterium tuberculosis 02_1987] gi|289709686|gb|EFD73702.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713707|gb|EFD77719.1| helicase [Mycobacterium tuberculosis T85] gi|308327082|gb|EFP15933.1| helicase [Mycobacterium tuberculosis SUMu002] gi|308330525|gb|EFP19376.1| helicase [Mycobacterium tuberculosis SUMu003] gi|308334359|gb|EFP23210.1| helicase [Mycobacterium tuberculosis SUMu004] gi|308338159|gb|EFP27010.1| helicase [Mycobacterium tuberculosis SUMu005] gi|308341852|gb|EFP30703.1| helicase [Mycobacterium tuberculosis SUMu006] gi|308349642|gb|EFP38493.1| helicase [Mycobacterium tuberculosis SUMu008] gi|308354271|gb|EFP43122.1| helicase [Mycobacterium tuberculosis SUMu009] gi|323719430|gb|EGB28558.1| helicase [Mycobacterium tuberculosis CDC1551A] gi|326903639|gb|EGE50572.1| helicase [Mycobacterium tuberculosis W-148] gi|328458676|gb|AEB04099.1| helicase [Mycobacterium tuberculosis KZN 4207] Length = 1606 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE R + +E TP +VV + + D Sbjct: 824 VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T + + H E+ + + + + +D Sbjct: 884 FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943 Query: 268 PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307 + T + D F Y + NPP+ Sbjct: 944 ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362 D GR K S + L+ ++ G V + Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063 Query: 363 SPLFNGRAGS 372 + A Sbjct: 1064 GYIDGNTADG 1073 >gi|54295178|ref|YP_127593.1| hypothetical protein lpl2258 [Legionella pneumophila str. Lens] gi|53755010|emb|CAH16498.1| hypothetical protein lpl2258 [Legionella pneumophila str. Lens] Length = 287 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168 + F + +LE LL + F+ HPD + Y +I++ Sbjct: 12 LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67 Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 G +F + PR L L+ ++ D Sbjct: 68 LPIAYITGQREFWSLSLKVTPNVLIPRHETEHLVELALELIPD------KENVSVLDLGT 121 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G K P+ + E + L Sbjct: 122 GSGAIALAL----------AKERPLWRIDACDFSKEALELACYNAKTLGLN--------- 162 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 NI + + K++H +SNPP+ + H RF P +S Sbjct: 163 NINFCHSYWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKQGDVRFEPTSALVSSQ 214 Query: 335 S-MLFLMHLANKLELPPNGGG 354 + L ++ G Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235 >gi|121582883|ref|YP_973325.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2] gi|120596145|gb|ABM39583.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2] Length = 1649 Score = 46.5 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 71/260 (27%), Gaps = 57/260 (21%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 + + T +V+ L+ ++ + +P+ GTG F+ Sbjct: 124 YAQARDSVLTAYYTEPEVIQAMWGLV--------QKMGFKGGKVLEPSAGTGNFIGAMPV 175 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 + + E + + +C A + I Sbjct: 176 ALREAS---------TITMVEPDSVSATICKA---LYADSDTLVHTCGMEIAP------- 216 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 + F + N PFG D K + K Sbjct: 217 -LRSESFDVVIGNVPFGNYRVHDSKF--DCMKLVIHD------------------YAIAK 255 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---TN 402 GG A++ S G +S R ++ E + + LP+ F R T+ Sbjct: 256 SLDLVRAGGIVAVITS-----TGTMDKPKSNFREYIAERADLVTAIRLPSGAFTRLGETD 310 Query: 403 IATYLWILSNRKTEERRGKV 422 +AT + +L K + V Sbjct: 311 VATDILVLRK-KPKVADSHV 329 >gi|320321244|gb|EFW77379.1| hypothetical protein PsgB076_28855 [Pseudomonas syringae pv. glycinea str. B076] gi|330882547|gb|EGH16696.1| hypothetical protein Pgy4_27040 [Pseudomonas syringae pv. glycinea str. race 4] Length = 578 Score = 46.5 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 76/274 (27%), Gaps = 46/274 (16%) Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162 I S + +A + F T+ L +A + + I D + Y + Sbjct: 43 IDIVSPDLRAPLQPF----TVEVLPQAA--AALAETIGRIAASFDAETAAYQIGLTYTGM 96 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + E F TP + + + DP CG G FL Sbjct: 97 L---PLEHRGTYGVFYTPPVLTARLIDQVTTAGMD------WATCRVLDPACGGGAFLVP 147 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ----- 277 + + ++ G L + + G + ++ D I Sbjct: 148 IAQRIINEAKGCSPKLLMQSIGNRLRG--YEIDPFGAWLTQVTLDAVVLPVSRIAGRRLP 205 Query: 278 ----QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 +L + RF + NPP+G+ K +K G Sbjct: 206 VMVTVCDSLRRSPVRD-RFDLVIGNPPYGR--AKLDPETRDRYKRSLYG----------H 252 Query: 334 GSM--LFLMHLANKLELPPNGGGRAAIVLSSSPL 365 ++ LF + GG A V +S L Sbjct: 253 ANLYGLFTDLALRHTK----LGGVIAYVTPTSFL 282 >gi|116333801|ref|YP_795328.1| adenine-specific DNA methylase [Lactobacillus brevis ATCC 367] gi|116099148|gb|ABJ64297.1| Adenine-specific DNA methylase [Lactobacillus brevis ATCC 367] Length = 340 Score = 46.5 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 39/234 (16%) Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP + ++ L+ E T+ D T GTG LT + + D + Sbjct: 101 TPDTIAYIMGYLVAR------LEKNKQHLTVLDLTVGTGNLLTAVLAQLKDVIA-----G 149 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G + + A+ SD +R + I Q L + +++ Sbjct: 150 EIAAYGVDNDDTMLAIAQT-------SSDLQRLPVELIHQ-DAL--EQLLVPASDLIVAD 199 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 P G D A + H F+ HL + + G + Sbjct: 200 LPIGYYPIDDNAANFQTHATEGHS---------------FVHHLLLEQAVNQLTPGGIGV 244 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 L + LF A G + +WL N ++ ++ LP++LF N + L Sbjct: 245 FLVPTQLFQTEAAKG---LLKWLPNNVYLQGLLNLPSELFANANAQKAILFLQK 295 >gi|150008154|ref|YP_001302897.1| putative helicase [Parabacteroides distasonis ATCC 8503] gi|149936578|gb|ABR43275.1| putative helicase [Parabacteroides distasonis ATCC 8503] Length = 1664 Score = 46.5 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 46/360 (12%), Positives = 96/360 (26%), Gaps = 52/360 (14%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + +L K +N D + + + N+YE + + + TP + V Sbjct: 844 KDTEVLNKFYENVRMNVGDIDNLEGKQTLIKNLYEKFFKGAFPKTVDKLGIVYTPVECVD 903 Query: 186 LATALLLDPDDALFK-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + D F + DP GTG F+T + + H Sbjct: 904 FIIHSVDDILRKEFDCSLSDENVHILDPFTGTGTFITRLLQSGLIRPEDLERKYKNEIHC 963 Query: 245 QELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK------------------ 284 EL + + + + L + I T Sbjct: 964 NELVLLAYYIADVNIESVFHSLVKRDTYLPFEGICLTDTFQTTENEENVLDQTWFPENAA 1023 Query: 285 --DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFL 339 D + NPP+ + D + R K + + + L+ Sbjct: 1024 NVDKQKKAPVRVIMGNPPYSVGQKSANDNAQNLSYAHLDKRIAETYAKAAQATNKNSLYD 1083 Query: 340 MHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 ++ GG A + + + + +G A G R+ L + + L Sbjct: 1084 SYIKAFRWASDRIADCKDGGVVAFISNGAWI-DGNAQEG---FRKCLEDEYSSVYVFNLR 1139 Query: 395 TD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 + +F + + L ++ + + + D + + K Sbjct: 1140 GNQRTSGELSRKEGGKIFGSGSRTPISITFLIKNPKKKGKATILYHDIGDYLSREQKLKK 1199 >gi|90961409|ref|YP_535325.1| adenine-specific methyltransferase [Lactobacillus salivarius UCC118] gi|90820603|gb|ABD99242.1| Adenine-specific methyltransferase [Lactobacillus salivarius UCC118] Length = 346 Score = 46.5 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 122/369 (33%), Gaps = 44/369 (11%) Query: 85 EYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 EYSL + NL++ Y+ + + + I ++ + + K+ + ++ Sbjct: 11 EYSLLEEAVKELQKNLQTTYLDALIETLENILDNNQVHVEDDK-PDKKTVAKLKELYADS 69 Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + + + + LI + SE A MTP + + + L+ Sbjct: 70 NI--KNLEADEKRQVIQLLILKSYSEDKIQANHQMTPDSIGMIVSYLI------ELFADS 121 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + T+ D GTG LTD N++ + + +G + + A+ Sbjct: 122 KKVLTITDICVGTGNLLTDIYNNLDKQNKNIQ------AYGIDNDDTLLALA-------- 167 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 S + +NI+ + + + + + P G + D V G Sbjct: 168 --SISTQFQKQNIELYHQDAIEELLIPKTDLVVGDLPVG--YYPIDDKVSDYITKNNDG- 222 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 S + + +L+ I + +F ++ +++ + Sbjct: 223 -------HSYAHYVLIEKSIRQLKEDG-----IGIFIVPRGIFE---VKDSVKLLKYIQK 267 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443 ++ ++ LPT+LF + ++ + + ++ + L+ + K Sbjct: 268 VGYLQGLLNLPTELFNDKQSMKSILVVQKKGNKAKQAEEVLLGDFPSFKKQEEFKKFINE 327 Query: 444 INDDQRRQI 452 I ++ I Sbjct: 328 IVSWAKKNI 336 >gi|325855448|ref|ZP_08171838.1| hypothetical protein HMPREF9303_0859 [Prevotella denticola CRIS 18C-A] gi|325483825|gb|EGC86781.1| hypothetical protein HMPREF9303_0859 [Prevotella denticola CRIS 18C-A] Length = 1491 Score = 46.5 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 40/242 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ IR DP+ G G F A G + + Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + +R + +L ++ SN PFG D Sbjct: 166 LHPYGKGNIFVRNEPFEAIGELE--------------NKDKYDLITSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGILAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ +F T++ + L +L + +E + Q + Sbjct: 260 E----VIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEGIEQQFV 315 Query: 426 NA 427 Sbjct: 316 ET 317 >gi|325981286|ref|YP_004293688.1| DNA methyltransferase [Nitrosomonas sp. AL212] gi|325530805|gb|ADZ25526.1| DNA methyltransferase [Nitrosomonas sp. AL212] Length = 924 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 77/265 (29%), Gaps = 56/265 (21%) Query: 98 NNLESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 NL+ + F +FE F+S + + +A LLY ++SGI + Sbjct: 240 KNLDDTLTRFPYINGKLFEERLPFASFDSHM-RAALLYCCALDWSGI-------SPAIFG 291 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA-------------LFKESP 203 +++++++ T + + L + + Sbjct: 292 SLFQNIMDE-TPNARRNLGAHYTTEENILKLIRPLFLDELHAEFAKIKHNTKRLQIFHNK 350 Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----------------HKIPPILVPHGQE 246 DP CG G FL A + + HG E Sbjct: 351 LASLKFLDPACGCGNFLVIAYRELRRLELEVLRALHDSGQQTLDITSIIQVDVDQFHGIE 410 Query: 247 LEPETHAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTL---SKDLFTGK 290 +E + + + + + + S +I G+ L + + Sbjct: 411 IEEFPAQIAQVALWLTDHQMNALVSEEFGQYFIRLPLNKSAHIVHGNALRLNWNTVIAAE 470 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKE 315 + + NPPF K + + + + Sbjct: 471 ECNVVMGNPPFIGKQYQTDEQIADK 495 >gi|325297206|ref|YP_004257123.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170] gi|324316759|gb|ADY34650.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170] Length = 1144 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 75/291 (25%), Gaps = 62/291 (21%) Query: 62 FGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFD 119 + V F+NT +E + T N++ Y+ K + D Sbjct: 248 IEHYEGNDRILSDVLEVLFFNTLNEKREGDIADTRLGENIKIPYLNGGLFE-KDSIDKLD 306 Query: 120 FS---STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 S L +Y + + + + ++ +I+E+L+ E ++ Sbjct: 307 IDFPYSYFKELMDFFSMYNFTIDENDPDDSEVGIDPEMLGHIFENLL-----EDNKDKGA 361 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPG-------------------------------M 205 F TP+++V + + + Sbjct: 362 FYTPKEIVQYMCRQSVIQYLKTHELNEQYAEPIERLINDGIVMPILQTKTVASRLMQLLK 421 Query: 206 IRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPP------------ILVPHGQELEP 249 + DP G+G G L + SH + G ++E Sbjct: 422 DVKVCDPAIGSGAFPMGILYVLYYAIHHLQSHAEPNKSFDSTQTKLDIIQNNIFGVDIEQ 481 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSKDLFTGKRFHYCL 296 + + + + N I G++L + Sbjct: 482 GAVDIARLRFWLALVVDEVSPQPLPNLDYKIMCGNSLLNRYDIDESLEAIF 532 Score = 37.6 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 15/118 (12%) Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + NPP+G + + V K + R P+ + + Sbjct: 664 FDIIIGNPPYGASFSTAEKNVLKARYSDVHMR----TPES-------YCYFISLAFRLAR 712 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 G + ++ ++ F + R LL + + L + F ++ T +++ Sbjct: 713 NTGVVSYIVPNNMFFQNENE----KTRSLLLFRHQLVRAINLGDNTFENADVPTCIFV 766 >gi|325563988|gb|ADZ31407.1| M.TliI [Thermococcus litoralis] Length = 567 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 31/252 (12%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +TP ++ + L +P+CG G FL A+ + + G Sbjct: 11 KKLGQVLTPFEIAEFLVNWAIKSPKDLI----------LEPSCGDGIFLRAAIRRLMELG 60 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGML--------IRRLESDPRRDLSKNIQQGSTLS 283 + + +G E++ E +L + + + L+ Sbjct: 61 ASPES-ISKQVYGVEIDSEILEKTKKLLLTEFSFVPTLINADFFDLEPPRGQQTLNNLLT 119 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 R + NPP+ + +E G LP+++ + F++H Sbjct: 120 APKIP--RVDVIVGNPPYIRYQSFSGK--TREKALRTALEEGVKLPELTASWVPFVIHAE 175 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 L+ GR A+VL S L G A R+WLL+ I++ +F Sbjct: 176 KFLKKD----GRLAMVLPSKLLHVGYA----KPFRKWLLKKFSNITIISFERRVFPGILE 227 Query: 404 ATYLWILSNRKT 415 T L + S Sbjct: 228 DTVLLLASKSGP 239 >gi|237719896|ref|ZP_04550377.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450448|gb|EEO56239.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 1023 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K G + I + F+ + N GG Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|218128937|ref|ZP_03457741.1| hypothetical protein BACEGG_00509 [Bacteroides eggerthii DSM 20697] gi|217988900|gb|EEC55217.1| hypothetical protein BACEGG_00509 [Bacteroides eggerthii DSM 20697] Length = 252 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 28/140 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + + + + DP Sbjct: 85 DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGE-------TAIGKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + V ML+ + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVSRTCCLMTVCNMLVHGCIGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF 292 + +L + F Sbjct: 180 ---VIHHDSLCPENFMDGWM 196 >gi|197294201|ref|YP_001798742.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] gi|171853528|emb|CAM11378.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus Phytoplasma australiense] Length = 225 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 81/287 (28%), Gaps = 74/287 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP + +L + DP G G Sbjct: 1 MYRVDRNNFFKNEKKATIYTPSWLSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E T N+ Sbjct: 52 LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395 +L + IVL + F S S+ + L + I +I+ LP Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIIGLPK 178 Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434 D+F + + I + K + IN+++ + Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225 >gi|206601478|gb|EDZ37963.1| superfamily II DNA/RNA helicase [Leptospirillum sp. Group II '5-way CG'] Length = 1309 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 77/312 (24%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTL----- 91 F L +E S VR++ + L ++ Y+ +L Sbjct: 302 FLFLLTVEDRNLLHESRVRKEAIDIYQDGYSLSRLRILSRKRRAYDRFPDLWKSLQIVFG 361 Query: 92 ----GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIE- 144 G+++ L FS++ ++ E + ++ A LL I F + Sbjct: 362 GLRSGASDIG--LAPLGGLFSEDQCSLLE-------TSEIDNAHLLSAIREIAYFETGDT 412 Query: 145 ---LHPDTVPDRVMSNIYEHLIR-------------------------RFGSEVS---EG 173 ++ + + ++YE L+ + S + Sbjct: 413 LARINYRDMDTEELGSVYESLLELHPVIRFDRTPWTFGFVGFGDESGNKGASSSGSQRKS 472 Query: 174 AEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRT------LYDPTCGTGGFLTDAMNH 226 + TP +V L + L ++ P R + DP+CG+G FL A Sbjct: 473 TGSYYTPDSLVRELIGSALEPVIKKTLEDHPDYPRKALLALRIIDPSCGSGHFLLSAARR 532 Query: 227 VADCGSHH----------------KIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPR 269 +A + + G ++ P +C + + +E P Sbjct: 533 LALEVARIDADSETPDEATRRHALREVVQHTIFGVDINPLAVELCRTALWLETVEPGKPL 592 Query: 270 RDLSKNIQQGST 281 L +I G++ Sbjct: 593 GFLDNHILCGNS 604 >gi|186469979|gb|ACC85607.1| MmeI [Methylophilus methylotrophus] Length = 919 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 106/351 (30%), Gaps = 64/351 (18%) Query: 60 LAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118 + I+ ++ + + + NT Y L+T + NL+ ++A+F +FE+ Sbjct: 207 KSLFQEYIETKTLEDGSDLAHHINTLFYVLNTPEQKRLK-NLDEHLAAFPYINGKLFEEP 265 Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + + LL + ++ + + ++++ ++ ++ Sbjct: 266 LPPAQFDKAMREALL-----DLCSLDW--SRISPAIFGSLFQSIMD---AKKRRNLGAHY 315 Query: 179 TPRDVVHLATALLLDPD-------------DALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 T + L + L T +DP CG G FL Sbjct: 316 TSEANILKLIKPLFLDELWVEFEKVKNNKNKLLAFHKKLRGLTFFDPACGCGNFLVITYR 375 Query: 226 HVADCG-----------------SHHKIPPILVPHGQELEPETHAVC---------VAGM 259 + H + G E+E + M Sbjct: 376 ELRLLEIEVLRGLHRGGQQVLDIEHLIQINVDQFFGIEIEEFPAQIAQVALWLTDHQMNM 435 Query: 260 LIRRLESDPRR----DLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 I + + +I + L D+ K+ + L NPPF K ++ Sbjct: 436 KISDEFGNYFARIPLKSTPHILNANALQIDWNDVLEAKKCCFILGNPPFVGKSKQTPGQ- 494 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 K L FG L SD ++ + + N R A V ++S Sbjct: 495 ----KADLLSVFGN-LKSASDLDLVAAWYPKAAHYIQTNANIRCAFVSTNS 540 >gi|292557960|gb|ADE30961.1| putative helicase [Streptococcus suis GZ1] Length = 2554 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 67/492 (13%), Positives = 140/492 (28%), Gaps = 116/492 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S F TP +V +L G L +P+CG G F+ Sbjct: 1041 EEYASARESTLTAFYTPPEVSTAIYKVL-----EQMGFQEG---NLLEPSCGIGNFIGML 1092 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + +G EL+ + + L ++ + N+ Sbjct: 1093 PKSMENAK----------VYGVELDTISAGIAQQ--LYQKSSIAAQGFEEVNV------- 1133 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F + N PFG F + + L + Sbjct: 1134 ----PDSFFDGVIGNVPFGD--------------------FKVSDKRYDKYNFLIHDYFF 1169 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A+V S + S +R+++ + + + LP D F Sbjct: 1170 AKSLDKLRPGGVMALVTSKGTMDKEN-----SNVRKYIAQRAELLGAIRLPNDTFKGNAG 1224 Query: 401 TNIATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV- 457 T + + + L R + V L + + + + + + + + + + Sbjct: 1225 TEVVSDILFLQKRDRLIDIEPDWVHL-DTDENGIRMNSYFVQHPEMILGEMKMVSGRFGP 1283 Query: 458 -----SRENGKFSRM----LDYRTFGYRRIKV------------LRPLRMSFILD----- 491 + EN S + + +V P +F Sbjct: 1284 EATCEAFENADLSELLNEAVSNIHGEISEYEVADELEEEDNSIPADPTVRNFSYTVLDDK 1343 Query: 492 -----KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE-- 544 + ++ +E T D ++ +++ + + +S +K++ K Sbjct: 1344 IYFRENSRMSPVEVSATAENRIK-GMIGIRDCVRNLIE-LQTEDYPDSEIKQAQKKLNTL 1401 Query: 545 ----AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600 K + S++ AF + A V + +GE ++ Sbjct: 1402 YDSFTKKYGLINSRANTSAFSDDSSYALLSALEVINEDGELERKADM------------- 1448 Query: 601 DYFVREVSPHVP 612 +F R + PH P Sbjct: 1449 -FFKRTIKPHKP 1459 >gi|302865793|ref|YP_003834430.1| hypothetical protein Micau_1292 [Micromonospora aurantiaca ATCC 27029] gi|302568652|gb|ADL44854.1| hypothetical protein Micau_1292 [Micromonospora aurantiaca ATCC 27029] Length = 1174 Score = 46.5 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 88/314 (28%), Gaps = 71/314 (22%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 D + R + ++Y+ L + + TP V +P F Sbjct: 169 DDLNTRFLGDLYQDL----STHAKKTYALLQTPDFVEEFILDRTFEPAVREFGL---PET 221 Query: 208 TLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVP---HGQELEPETHAVCVAG 258 ++ DPTCG+G FL A + + + ++ G ++ P A+ Sbjct: 222 SVIDPTCGSGHFLLGAFGQLVRKWREREPATDIRVLVERALGQVTGVDINPFAVAIARFR 281 Query: 259 MLIRRL------ESDPRRDLSKNIQQGSTLSK---------------------------- 284 +LI + + + G +L + Sbjct: 282 LLIAAMRECGLTSLERTPSWPVRVATGDSLLQWGRKSRHQGDLIAMLEGQNAFAYAAEDA 341 Query: 285 ----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 D ++ + NPP+ +K ++ + ++ R F Sbjct: 342 DVLADYLREGQYTVVVGNPPYITVADKARNQLYRDIYPDVCHRQYALTVP-------FAK 394 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN---DLIE--AIVALPT 395 + G A V G A + E + L+E+ +E AIV Sbjct: 395 RFFDLARQSDEHGEGAGHV----GQITGNAFM-KREFGKKLIEDYFAHQVELTAIVDTSG 449 Query: 396 DLFFRTNIATYLWI 409 T + + Sbjct: 450 AYIPGHGTPTAILV 463 >gi|323969194|gb|EGB64496.1| hypothetical protein ERHG_04662 [Escherichia coli TA007] Length = 2255 Score = 46.5 bits (109), Expect = 0.017, Method: Composition-based stats. Identities = 61/384 (15%), Positives = 119/384 (30%), Gaps = 74/384 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 89 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ + L ++ ++ E + + Sbjct: 273 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319 Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 G++ RI+V ++ K + R E+ I W L+ S D++ ++ Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLNMAEPSPTADVVDEGEMRLING 379 Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553 W + I+S+ K LK+ + Sbjct: 380 VWQKYAGGRWIESDAGKELKIDVA 403 >gi|265763566|ref|ZP_06092134.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256174|gb|EEZ27520.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1038 Score = 46.5 bits (109), Expect = 0.017, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM----------- 142 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G +A+ ++ + S + T+ + F F Sbjct: 143 ----SGTYG-------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K G + I + F+ + N GG Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|324111110|gb|EGC05096.1| hypothetical protein ERIG_04245 [Escherichia fergusonii B253] Length = 2255 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 61/384 (15%), Positives = 120/384 (31%), Gaps = 74/384 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 89 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + + E K+ L++ + L ++ ++ E + + Sbjct: 273 RKHSAEMAEKIPLVDKSTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319 Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 G++ RI+V ++ K + R E+ I W L S D++ ++ Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVDEGEMRLING 379 Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553 W + I+++ K LK+ A+ Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403 >gi|254446640|ref|ZP_05060116.1| hypothetical protein VDG1235_4891 [Verrucomicrobiae bacterium DG1235] gi|198260948|gb|EDY85256.1| hypothetical protein VDG1235_4891 [Verrucomicrobiae bacterium DG1235] Length = 1284 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 79/302 (26%), Gaps = 82/302 (27%) Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFEDFDFS---- 121 E+ A F N + L T + + Y+ FS NAK + + F Sbjct: 375 EEALAHFADIPFLNGGLF--ECLDRTEGDSEKKRYLDGFSRNAKKRPHVPDHLFFDSGET 432 Query: 122 --------STIARLEKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG 167 + E+ L I F+ +E P ++ ++E+L+ + Sbjct: 433 ADLSSAYGDKKRKTEQVTGLITILNSYKFTIVENTPIDQEIALDPELLGKVFENLLASYN 492 Query: 168 SEVS----EGAEDFMTPRDVVHLATA--------LLLDPDDALFKESPGMI--------- 206 E + F TPR +V +L + + Sbjct: 493 EETKTTARKQTGSFYTPRTIVDYMVNESLKAHLARVLVEKADMLESKAKKGLDNLFSYTD 552 Query: 207 -------------------RTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILVP- 242 + DP CG+G G L + + ++ Sbjct: 553 EEPTFTTSQVNTLIAAIDQVKILDPACGSGAFPMGVLHKLVYILGKLDRDNEGWKQTQLA 612 Query: 243 --------------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + + + + + ++ P ++ +L D T Sbjct: 613 KLDSAPMREALEAAFEENNDDYGRKLYLIENCLYGVDIQPIAIQITKLRFFISLVCDQKT 672 Query: 289 GK 290 + Sbjct: 673 NR 674 >gi|88192890|pdb|2F8L|A Chain A, Crystal Structure Of A Putative Class I S-Adenosylmethionine-Dependent Methyltransferase (Lmo1582) From Listeria Monocytogenes At 2.20 A Resolution Length = 344 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 40/233 (17%) Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 ++ DP CGT LT +N + K + G +++ ++ + Sbjct: 127 QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----L 176 Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + ++ L +D +S+ P G + D++A E Sbjct: 177 VGADLQRQKXTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCR 227 Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378 E F LF+ + GG ++ + + Sbjct: 228 EEGHSF---------AHFLFIEQGXRYTKP----GGYLFFLVPDAXFGTSDFAKVD---- 270 Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430 +++ +N IE I+ LP LF + IL + + +V L N + L Sbjct: 271 KFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADVDVKPPKEVLLANLSSL 323 >gi|10954867|ref|NP_053287.1| hypothetical protein pTi-SAKURA_p049 [Agrobacterium tumefaciens] gi|6498220|dbj|BAA87672.1| tiorf47 [Agrobacterium tumefaciens] Length = 1693 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 72/274 (26%), Gaps = 60/274 (21%) Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + + E + + S TP +V + + + Sbjct: 140 DEIGSDLEDAVGETDYASLARCTQYAHFTPEFIVRAIWS--------GLQRLGWRGGRVL 191 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P GTG F + D G EL+P T + Sbjct: 192 EPGIGTGLFPALMPEALRDLS---------HVTGVELDPVTACIVR------------LL 230 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I G ++ F + NPPF + + A Sbjct: 231 QPRARILTGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY-------- 280 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ + L+ G AA V S +G +S R+ + + A Sbjct: 281 -------FVARSIDLLKP----GAFAAFVTS-----SGTMDKADSAARQHIATTADLIAA 324 Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 + LP F T++ + RK E G Sbjct: 325 IRLPEGSFRADAGTDVVVDILFFRKRKVAEPEGD 358 >gi|13541512|ref|NP_111200.1| Type II restriction enzyme, methylase subunit [Thermoplasma volcanium GSS1] Length = 1007 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 64/248 (25%) Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133 K+ G F N S + + + + + A+ F+D++F ++++ L Sbjct: 234 KIEGIPFLNGSLFDREDYLTRDKEEEISEILNEAFLRARKFFDDYNF-----TVDESAPL 288 Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + ++ ++E+L+ + F TP+D + L Sbjct: 289 EVEVS-----------IDPALIGTVFENLL---LEKERGEKGTFYTPKDEISFICRRALV 334 Query: 194 PDDALFKESPGMIRTLYD--------------------------------PTCGTGGFLT 221 L R+L D P G+GGFL Sbjct: 335 RYLGLQDRYTPDSRSLQDGIDLYLDELRKSKKLDEIRNLKERLLKVRVVDPAVGSGGFLV 394 Query: 222 DAMNHVADCGSHH-------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 M + + K +G ++EPE + M + + Sbjct: 395 VMMQEIVSIVTEADSIAGWISDPYEYKKTIYGNIYGFDIEPEAVEIARLRMWLSMIIDLE 454 Query: 269 RRDLSKNI 276 N+ Sbjct: 455 VPVPLPNL 462 >gi|291530019|emb|CBK95604.1| DNA methylase [Eubacterium siraeum 70/3] Length = 2877 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 96/317 (30%), Gaps = 64/317 (20%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYE 160 F N +AI ++ +F + A E+ +L + E + +Y Sbjct: 1300 ERFRRNMEAIRVLKECEFDNRFATPEEQEILSQYVGWGGIPEAFDENNSSWADEFIELYT 1359 Query: 161 HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L + S + F TP V+ ++ + +P+CG G F Sbjct: 1360 ALSPDEYESARASTLTAFYTPPVVISSIYK--------AMEQMGFKEGNILEPSCGIGNF 1411 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + + D +G E++ + + L ++ + NI Sbjct: 1412 IGMLPSSMQDSK----------IYGVEIDKISAGIAQQ--LYQKTSIAAQPFEEANI--- 1456 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 F + N PFG D+ + + F Sbjct: 1457 --------PDSFFDAVIGNVPFGDIRVNDRRYNKHNFLIHDY----------------FF 1492 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 +KL GG A++ S + +RR++ + + + LP + F Sbjct: 1493 AKSLDKLRP----GGVMALITSKGTMDKENPA-----VRRYIAQRADLLGAIRLPNNTFK 1543 Query: 399 --FRTNIATYLWILSNR 413 T + + + IL R Sbjct: 1544 GNAGTEVVSDILILQKR 1560 >gi|225026192|ref|ZP_03715384.1| hypothetical protein EUBHAL_00433 [Eubacterium hallii DSM 3353] gi|224956443|gb|EEG37652.1| hypothetical protein EUBHAL_00433 [Eubacterium hallii DSM 3353] Length = 2231 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 57/426 (13%), Positives = 123/426 (28%), Gaps = 107/426 (25%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60 M E + +++N +W D+ + + L +E + E+ Sbjct: 893 MEEESSYFTAISNRVWT-------DYDKKE-----------KELSGEIEAS-----EEKE 929 Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120 + N E +F+ T + LG + + I + + + + Sbjct: 930 SLEEINGIAEPIQAT---NFHITDD----ELGQGTPKEKFRANIMAI-----QLLKKCED 977 Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFGSEVSEGAEDF 177 + A E+ +L + + +T + + + + + Sbjct: 978 ENRNATPEEQEILSRYVGWGGLADAFDETKSAWETEYLELKTVLTPEEYAAARASTLNAH 1037 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 T V+ +L + G + +P+ G G F ++ Sbjct: 1038 YTQPIVIESMYQVL-----ENLGFTKG---NILEPSMGVGNFFGMLPENL---------- 1079 Query: 238 PILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 +G EL+ + + A +LI+ K + F Sbjct: 1080 NQSKLYGVELDSISGRIAKLLYPDASILIKG------------------FEKTDYPNDFF 1121 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG D+ + FL ++L Sbjct: 1122 DVAIGNVPFGAYKVNDRQYDRYNFMIHDY----------------FLAKTIDQLRP---- 1161 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWI 409 GG AA++ + + E+R++L E + + LP F T ++T + Sbjct: 1162 GGVAALITTKGTM-----DKASPEVRKYLAERADLLGAIRLPNTAFKANAGTEVSTDILF 1216 Query: 410 LSNRKT 415 R++ Sbjct: 1217 FQKRES 1222 >gi|256840308|ref|ZP_05545816.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737580|gb|EEU50906.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1035 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDTVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F F Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K G + I + F+ + N GG Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R 413 Sbjct: 294 H 294 >gi|162448589|ref|YP_001610956.1| DNA modification methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161159171|emb|CAN90476.1| probable DNA modification methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 576 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 57/197 (28%), Gaps = 21/197 (10%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 E +T VV+L L D +L +P CG G FL A + Sbjct: 27 SSGEAHGVVLTKPHVVNLILDLAGYTADRDL-----ASLSLLEPACGHGAFLVPAAERLI 81 Query: 229 DCGSHHKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 H ++ AV A + +D R I G Sbjct: 82 QSARRHDRDLLDIEPAIRSYDVERDHVDRARLAVAGALARLGLPHADATRLSEAWIAHGD 141 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 L G+RF + NPP+ + + + E + R+ L +D + F+ Sbjct: 142 FLLTSQ--GRRFDAVVGNPPYVR-----IEQLSPELQEEYRHRYR-SLYDRADLYVAFIE 193 Query: 341 HLANKLELPPNGGGRAA 357 L A Sbjct: 194 RGLELLAPGGVLSFICA 210 >gi|330959662|gb|EGH59922.1| hypothetical protein PMA4326_14004 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 159 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 10/114 (8%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 F TP + L + L++D + + TL +P G+G + N + + Sbjct: 3 SKADMGQFFTPPSISTLLSTLVMDIEHIQSQVKRRGFVTLSEPASGSGAMVIAFANSMLE 62 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 G +++ + ++ A +L + + G+TL+ Sbjct: 63 LGINYQQHLHVTLVDLDIRAVHMAFIQLSLL----------HIPAVVVHGNTLT 106 >gi|317490714|ref|ZP_07949177.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA] gi|316910184|gb|EFV31830.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA] Length = 2244 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 76/295 (25%), Gaps = 64/295 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R + + TP +V + + DP GTG F Sbjct: 499 REYAKARESTLTAYYTPIEVARAVW--------DYLAMAGFSAGNVLDPAAGTGRFADAM 550 Query: 224 MNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 +A S + P V Q P C + +T Sbjct: 551 PEGMAGLASITMVEPDPVSALIAQHAHPGMAVQCKG-------------------YEATT 591 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L+ D F ++N PFG+ + E F L Sbjct: 592 LADD-----SFDVAVTNVPFGQ-FSVYDRRHAGEGMLVHDYFFAKAL------------- 632 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--- 398 GG A + +S L S RR L + LP F Sbjct: 633 ------DHVRPGGLVAFITASGTL-----DKKSSSARRELAARAELVCAARLPDSTFRAS 681 Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 T + + + +L R+ + + T ++G + + R +L Sbjct: 682 AGTTVTSDVVVLRKRRERISNEEA--AGLPWVGTVEHSDGVRVNRWIAEHREAVL 734 >gi|120600856|ref|YP_965430.1| Eco57I restriction endonuclease [Shewanella sp. W3-18-1] gi|120560949|gb|ABM26876.1| Eco57I restriction endonuclease [Shewanella sp. W3-18-1] Length = 609 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 74/265 (27%), Gaps = 47/265 (17%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A K+ F I+ ++ +IY ++ + + TP +V Sbjct: 89 AKNTGKVIAQFPDIDAG------YLIGSIYTAML---PTAYRSDLGAYYTPPPLVSRLLD 139 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 L + ++ DP CG G FL + H L G+ L+ Sbjct: 140 LAEEAGVDFS------TASVIDPACGGGAFLAPVAMRMLQRSKHASSEWKLAQIGKRLKG 193 Query: 250 ETHAVCVAGM--------LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 A M LI RR I L+ + F + NPP+ Sbjct: 194 VEIDPFAAWMTHVLLECVLIEHCIIARRRLAKSVISICDALT--YQSPVDFDLVIGNPPY 251 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIV 359 G + R G ++ LF + G A + Sbjct: 252 G-------KVSLDTEVREKFSRSLFGH-----ANLYGLFTDLALRLAKPE----GVIAYL 295 Query: 360 LSSSPLFNGRAGSGESEIRRWLLEN 384 +S L G +R L++ Sbjct: 296 TPTSFL----GGQYFKALRELLIDE 316 >gi|14324897|dbj|BAB59823.1| modification methylase [Thermoplasma volcanium GSS1] Length = 985 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 64/248 (25%) Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133 K+ G F N S + + + + + A+ F+D++F ++++ L Sbjct: 212 KIEGIPFLNGSLFDREDYLTRDKEEEISEILNEAFLRARKFFDDYNF-----TVDESAPL 266 Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 + ++ ++E+L+ + F TP+D + L Sbjct: 267 EVEVS-----------IDPALIGTVFENLL---LEKERGEKGTFYTPKDEISFICRRALV 312 Query: 194 PDDALFKESPGMIRTLYD--------------------------------PTCGTGGFLT 221 L R+L D P G+GGFL Sbjct: 313 RYLGLQDRYTPDSRSLQDGIDLYLDELRKSKKLDEIRNLKERLLKVRVVDPAVGSGGFLV 372 Query: 222 DAMNHVADCGSHH-------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 M + + K +G ++EPE + M + + Sbjct: 373 VMMQEIVSIVTEADSIAGWISDPYEYKKTIYGNIYGFDIEPEAVEIARLRMWLSMIIDLE 432 Query: 269 RRDLSKNI 276 N+ Sbjct: 433 VPVPLPNL 440 >gi|222080160|ref|YP_002540023.1| helicase SNF2 family [Agrobacterium vitis S4] gi|221738805|gb|ACM39584.1| helicase SNF2 family [Agrobacterium vitis S4] Length = 470 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 68/274 (24%), Gaps = 60/274 (21%) Query: 153 RVMSNIYEHLI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + E + + S TP ++ + + + Sbjct: 142 DDLGTSLETAVAESDYASLARCTQYAHFTPEFIIRAIWS--------GLQRLGWRGGRIL 193 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P GTG F D G EL+P T + Sbjct: 194 EPGIGTGLFPALMPEAYRD---------NSFVTGIELDPVTARIAR------------LL 232 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I DL + + NPPF + + + K Sbjct: 233 QPRARIINADFARTDLAP--IYDLAIGNPPFSDRSVRSDRSYRKLGLRLHDY-------- 282 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ + L G AA V SS + A R + + + A Sbjct: 283 -------FIARSIDLLRP----GALAAFVTSSGTMDKADAT-----AREHIARSADLSAA 326 Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 + LP F T++ + RK + G Sbjct: 327 IRLPEGSFRRDAGTDVVVDILFFRKRKVGQAEGD 360 >gi|332523009|ref|ZP_08399261.1| type III restriction enzyme, res subunit [Streptococcus porcinus str. Jelinkova 176] gi|332314273|gb|EGJ27258.1| type III restriction enzyme, res subunit [Streptococcus porcinus str. Jelinkova 176] Length = 1982 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 69/276 (25%), Gaps = 59/276 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T ++ + + DP+ GTG F Sbjct: 668 KEYSDMKQSSLTAYYTDPTLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 719 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 H+ + +G EL+ T A+ + +I+ Sbjct: 720 PKHLRENSE---------LYGVELDTITGAIAK------------HLHPNSHIEV-KGFE 757 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F LSN PF + R+ D + + Sbjct: 758 TVAFNDNSFDLVLSNVPFA-------------NIRIADSRY--------DKPYMIHDYFV 796 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K + GG+ AI+ G I + + E V LP F Sbjct: 797 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDSAFKAIAG 851 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 TN+ T + + + + + Sbjct: 852 TNVTTDMLFFQKHMDKGYVADDLAFSGSIRYDKDDR 887 >gi|317132847|ref|YP_004092161.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3] gi|315470826|gb|ADU27430.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3] Length = 2462 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 71/511 (13%), Positives = 142/511 (27%), Gaps = 86/511 (16%) Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 + + F+ A + + A E+ +L + + GI D Sbjct: 807 RITDDHLGEGGAKTKYGFNIAAICTLKQIEAEGRTATPEEQEILSRYVG-WGGIPQAFDP 865 Query: 150 VPDRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + S Y LI + + T V+ + Sbjct: 866 -NNASWSKEYAELIGALTAEEYEMARASTLNAHYTSPTVIRAIYEAVG--------NMGF 916 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + +P CG G F +A +G EL+ T + Sbjct: 917 QTGNILEPACGVGNFFGLLPESMAA----------SRLYGVELDSITGRIAK-------- 958 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 L N + + F + N PFG D+ +K G Sbjct: 959 ------QLYPNAKIIVAGFETTDRKDFFDLAVGNVPFGSYKVSDRAY----NKLGF---- 1004 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 I D + K GG A V + + S E +RR++ + Sbjct: 1005 -----PIHD-------YFFAKTLDQVRPGGVIAFV---TSRYTMDKQSPE--VRRYIAQR 1047 Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + + LP+D F T + T + L R I + +G Sbjct: 1048 ADLLGAIRLPSDAFKANAGTEVTTDILFLQKRDRPID------IEPDWVHLGQTEDGIPV 1101 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK--TGLARLE 499 D +L D + G ++ P + + ++ ++ L+ Sbjct: 1102 NSYFADHPEMVLGT----------IQWDDKMHGDKKETACEPFPDANLSEQLHEAVSHLQ 1151 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559 + +L L ++ +D P + Y + K + N + ++ + +++ Sbjct: 1152 GQMAEAELPDLGENEEIDDSIPADPNVKNYSYTVVDGKVYYRENS-RMVRPELNETAKAR 1210 Query: 560 FINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590 + +D ++ E+ D + Sbjct: 1211 VMGMVELRDCVQKLISQQLDEYASDAEIRNT 1241 >gi|310766458|gb|ADP11408.1| conserved uncharacterized protein [Erwinia sp. Ejp617] Length = 241 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 9/140 (6%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + P + ++ L + F TP + + L L + F++ P + Sbjct: 90 EEAPGDFLGRVFMQL-----ELGDKYRGQFFTPWSMGLMMAQLQLGNTEEQFRDKPFI-- 142 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 TL +P CG G + + + G + +++P + + + + + Sbjct: 143 TLSEPACGAGCMALAFASVLREAGF--PPHRRMWVSATDIDPLAAGMAYIQLSLCGVAGE 200 Query: 268 PRRDLSKNIQQGSTLSKDLF 287 + + ++ L + Sbjct: 201 VVIGNALSDERRRVLYTPMH 220 >gi|310765365|gb|ADP10315.1| conserved uncharacterized protein [Erwinia sp. Ejp617] Length = 228 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 9/140 (6%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + P + ++ L + F TP + + L L + F++ P + Sbjct: 80 EEAPGDFLGRVFMQL-----ELGDKYRGQFFTPWSMGLMMAQLQLGNTEEQFRDKPFI-- 132 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 TL +P CG G + + + G + +++P + + + + + Sbjct: 133 TLSEPACGAGCMALAFASVLREAGF--PPHRRMWVSATDIDPLAAGMAYIQLSLCGVAGE 190 Query: 268 PRRDLSKNIQQGSTLSKDLF 287 + + ++ L + Sbjct: 191 VVIGNALSDERRRVLYTPMH 210 >gi|296127563|ref|YP_003634815.1| type IIS restriction endonuclease [Brachyspira murdochii DSM 12563] gi|296019379|gb|ADG72616.1| type IIS restriction endonuclease, putative [Brachyspira murdochii DSM 12563] Length = 1076 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 80/299 (26%), Gaps = 71/299 (23%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 LE V + + + + F N +S ++ + Sbjct: 261 YYSDVLEDLFFNVLNMDMEKRKFSKERVIYNYEKAIPFLNGGLFS-KKEDDEAVKSIDDE 319 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 I FE ++F+ + ++ + ++ I+E+L Sbjct: 320 IIKG----LFEFFEMYNFT---------------VDESAPFDVEIS-IDPEMLGRIFENL 359 Query: 163 IRRFG----SEVSEGAEDFMTPRDVVHLAT-------------ALLLDPDDALFKESPGM 205 + + F TPR++V + + D +F + Sbjct: 360 LAEINPETKESARKETGSFYTPREIVDYMVMEAIKLYLYKKMPDMEKNKIDRIFDVDESV 419 Query: 206 IRT---------------LYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILV----- 241 T + DP CG+G G L N + +H+ V Sbjct: 420 KYTDEERKGILKNIHDMIILDPACGSGAFPLGILQRVFNVIDKLDPNHEYYKNYVIDKLP 479 Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + + + +I ++ P ++ +L D K+ Sbjct: 480 SGAKAEFKKLYDAKKFSYAYKLDILQSMIHGVDIQPIAIEVSKLRAFLSLVVDEKKEKK 538 >gi|189467033|ref|ZP_03015818.1| hypothetical protein BACINT_03415 [Bacteroides intestinalis DSM 17393] gi|189435297|gb|EDV04282.1| hypothetical protein BACINT_03415 [Bacteroides intestinalis DSM 17393] Length = 1053 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 23/152 (15%) Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 F SN PFG D + E+ S + FL K Sbjct: 189 TFDVVASNIPFG-----DMAVFDPEYTGVPDN--ARRTAAKSIHNYFFL-----KGLDAA 236 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S L + + +RR +++N I ++V LP +LF T + + L Sbjct: 237 REGGIVAFITSEGVLNSPKNEL----VRRHIVKNANIVSVVRLPNNLFTDHAGTEVGSDL 292 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGK 439 IL T+ R L + + G Sbjct: 293 VILQKDTTKNRE----LSEQEKWFIRATDIGD 320 >gi|88810586|ref|ZP_01125843.1| hypothetical protein NB231_15938 [Nitrococcus mobilis Nb-231] gi|88792216|gb|EAR23326.1| hypothetical protein NB231_15938 [Nitrococcus mobilis Nb-231] Length = 1207 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 97/324 (29%), Gaps = 74/324 (22%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + R + ++Y+ L + TP V L+P F Sbjct: 172 HDFTDPGLDTRFLGDLYQDL----SEAARKRYALLQTPEFVEAFILERTLEPAIDAFGLE 227 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC------GSHHKIPPILVP---HGQELEPETHA 253 L DP CG+G FL A + G + I HG ++ P A Sbjct: 228 ---DIRLLDPACGSGHFLLGAFQCLLGHWQKAAPGLDARERVIHALAGVHGVDVNPFAVA 284 Query: 254 VCVAGMLIRRLESDPRRDLSK------NIQQGSTLSK----------------------- 284 + +L+ L++ + L + N+ G +L Sbjct: 285 IARFRLLVAALQATGIKMLKEAPGWCFNLTAGDSLLHGRRFGQLDLVGGKGLDQRYAHAY 344 Query: 285 --------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + G+++H + NPP+ +K + + + +F G+P Sbjct: 345 AAEDIDEINRILGQQYHAVVGNPPYITASDKALNTLYRARYGSCHRQFSLGVP------- 397 Query: 337 LFLMHLANKLELPPNG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL----IEAIV 391 F NG G ++ ++S + E + L+E+ L + ++ Sbjct: 398 -FTERFFQLAVEDANGPAGFVGLITTNSFMKR--------EFGKKLIEDYLPRQDLTHVI 448 Query: 392 ALPTDLFFRTNIATYLWILSNRKT 415 T + NR Sbjct: 449 DTSGAYIPGHGTPTVILFGRNRAP 472 >gi|166365940|ref|YP_001658213.1| adenine specific DNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166088313|dbj|BAG03021.1| adenine specific DNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 1065 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 82/280 (29%), Gaps = 59/280 (21%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------- 208 YE + + S++ E + TP VV + F+ G+ Sbjct: 301 YETFLAEYDSKMRESRGVYYTPEPVVSYMVRSVDYILKNKFQIPKGLADAKKITIKNPNN 360 Query: 209 -----------LYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEP 249 + DP GTG FL ++H+ D K + G EL Sbjct: 361 SQETQEVHQVLILDPAVGTGTFLHSVIDHIYDSFRQQKGMWSSYVSKHLLPRLFGFELLM 420 Query: 250 ETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL----------------------SKD 285 + V + ++ L D D I +TL +KD Sbjct: 421 APYTVAHMKLGLQLQELGYDFSADERLGIYLTNTLQEAFQIPPADGFLNRIRDEAAAAKD 480 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA-- 343 + L NPP+ + + K+ P + G + + Sbjct: 481 VKQEMPVMVILGNPPYSYQSMNTDPWIVNLVKDYYQLDGKPLGERNPKGLLDDYVKFIRF 540 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 + + G G A++ + L N +R+ L++ Sbjct: 541 AQYRVAETGYGVVALITNHGYLDNPTFRG----MRQNLMQ 576 >gi|317489197|ref|ZP_07947715.1| methyltransferase domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911705|gb|EFV33296.1| methyltransferase domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 2013 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 63/255 (24%), Gaps = 57/255 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F TP+++ + + +P+CGTG F Sbjct: 510 GEYAAARASTLTAFYTPQEIARPIWE--------AIRGMGLSGGRVLEPSCGTGAFFAAM 561 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + G EL+ T + A S I G Sbjct: 562 PEAL----------AGCRLVGVELDGLTARIARA------------LHPSAEIIHG-GFE 598 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG ++ D E F L Sbjct: 599 HADLDDESFDVAVGNVPFG-SYQVDDPRHRDEGLLVHDWFFARAL--------------- 642 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 GG A V S L + E + V LP F Sbjct: 643 ----DLVRPGGIVAFVTSKGTLDKKNPAARRRIA-----ERAELVGAVRLPNTAFSPHAE 693 Query: 404 ATY-LWILSNRKTEE 417 T + IL R+ E Sbjct: 694 VTADVVILQKRERAE 708 >gi|295099158|emb|CBK88247.1| DNA methylase [Eubacterium cylindroides T2-87] Length = 2848 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 72/257 (28%), Gaps = 57/257 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T ++ + + +P+CG G F+ Sbjct: 1325 EYAAARASSLTAFYTSPVIIGAMYQ--------ALSQMGFRQGNILEPSCGVGNFIGMLP 1376 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +AD +G E++ + + + + +I + K Sbjct: 1377 DSMADSK----------AYGVEIDSISGRIAQ------------QLYQNSSIAV-NGFEK 1413 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F + N PFG ++ +K H FG Sbjct: 1414 VQMPDSFFDVAIGNVPFG-DFKVRDKKYDKNHWLIHDYFFG------------------- 1453 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNI 403 K GG A + S + S +R++L + + + LP + F Sbjct: 1454 KTLDKVRPGGVIAFITSKGTMDKEN-----SAVRKYLAQRADLIGAIRLPNNAFKANAGT 1508 Query: 404 ATYLWILSNRKTEERRG 420 I+ +K + Sbjct: 1509 EVTSDIIFLQKRDRMTD 1525 >gi|294807413|ref|ZP_06766217.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b] gi|294445373|gb|EFG14036.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b] Length = 523 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 77/246 (31%), Gaps = 53/246 (21%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP VV L P PG DP+ GTG + V + Sbjct: 20 NSVLTAFYTPEPVVTAMQESLQVP-----GIRPG---RFLDPSAGTG-MFISGLKGVPEV 70 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 K A+ D ++IQ + Sbjct: 71 HCFEKDKLTGKILSALYPESRVAI----------------DGFQSIQP--------YYNN 106 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELP 349 F SN PFG D+D E + + S S+ + + K Sbjct: 107 YFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFLKGMDT 153 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYL 407 + GG A + +S + + + +R WL+ + + + + LP +LF T +++ L Sbjct: 154 LHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTEVSSDL 209 Query: 408 WILSNR 413 +L Sbjct: 210 IVLQKN 215 >gi|325832284|ref|ZP_08165283.1| methyltransferase domain protein [Eggerthella sp. HGA1] gi|325486120|gb|EGC88574.1| methyltransferase domain protein [Eggerthella sp. HGA1] Length = 2013 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 63/255 (24%), Gaps = 57/255 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + F TP+++ + + +P+CGTG F Sbjct: 510 GEYAAARASTLTAFYTPQEIARPIWE--------AIRGMGLSGGRVLEPSCGTGAFFAAM 561 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + G EL+ T + A S I G Sbjct: 562 PEAL----------AGCRLVGVELDGLTARIARA------------LHPSAEIIHG-GFE 598 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG ++ D E F L Sbjct: 599 HADLDDESFDVAVGNVPFG-SYQVDDPRHRDEGLLVHDWFFARAL--------------- 642 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 GG A V S L + E + V LP F Sbjct: 643 ----DLVRPGGIVAFVTSKGTLDKKNPAARRRIA-----ERAELVGAVRLPNTAFSPHAE 693 Query: 404 ATY-LWILSNRKTEE 417 T + IL R+ E Sbjct: 694 VTADVVILQKRERAE 708 >gi|329769195|ref|ZP_08260615.1| hypothetical protein HMPREF0433_00379 [Gemella sanguinis M325] gi|328839414|gb|EGF88992.1| hypothetical protein HMPREF0433_00379 [Gemella sanguinis M325] Length = 300 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 98/313 (31%), Gaps = 53/313 (16%) Query: 118 FDFSSTIARLEKAGL----LYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVS 171 F + ++ GL L K + + D + +Y+ L+ + E++ Sbjct: 9 FKIDKEVEEIKGEGLYFEGLIKYLTLENDDDYFDIVDNYDKETIRKVYQFLLLKALKELN 68 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +TP + + L+ ++ D G+G L + V Sbjct: 69 -NPSYDITPEVITMYISHLIECIYGD-------KKVSITDLASGSGSLLINIAALVKGDK 120 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + +L +E I L K+ Sbjct: 121 ELTSVDVDSNYVRLQQN-------IFNLLETNVE----------IINQDALKP--LNIKK 161 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 +S+ PFG ++D K S ++LF+ AN L + Sbjct: 162 QDVVISDVPFGYYADEDNSLNYKLCSADGY----------SLNALLFIEQAANYL----D 207 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G +V+ L E +++L E+ + A++ LP ++F + + +++ Sbjct: 208 DNGVGILVIPKKVL------ELEDNFKKYLEEDINLNAVITLPDEMFKNASQQKAIILIT 261 Query: 412 NRKTEERRGKVQL 424 + +V L Sbjct: 262 KKGQNRLPNQVFL 274 >gi|330997120|ref|ZP_08320973.1| putative septum site-determining protein MinC [Paraprevotella xylaniphila YIT 11841] gi|329570915|gb|EGG52622.1| putative septum site-determining protein MinC [Paraprevotella xylaniphila YIT 11841] Length = 1357 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 62/524 (11%), Positives = 138/524 (26%), Gaps = 69/524 (13%) Query: 120 FSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 E+ L K ++ R++ +Y+ + + E Sbjct: 824 LDDEAKTEEENERLQKFYDYVRTTVGDITDAEGRQRLIVELYDKFFKVASPKTVEKLGIV 883 Query: 178 MTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TP +VV + F S + DP GTG F+T + Sbjct: 884 YTPVEVVDFIIRSVGYIIQKEFGRSLSDENVHILDPFTGTGTFITRLLQSELINREALAR 943 Query: 237 PPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTL------SKDLFT 288 H E+ + + + + L + I T S + Sbjct: 944 KYCKEIHANEIVLMAYYIASINIESVFHSLVPEEEYRTFDGICLTDTFQLGEKDSDENLY 1003 Query: 289 GKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---- 329 ++F + NPP+ + + +N R + Sbjct: 1004 SEQFPTNSKRVMAQKKCPITVVVGNPPYSI----GQKSANDNAQNQSYPRLEKHIETTYV 1059 Query: 330 -------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 S L GG V + + L +R+ Sbjct: 1060 AQSEANLNKSAYDSYVKAFRWASDRLNEKEGGVIGFVTNGAWLDANGLDG----MRKCFE 1115 Query: 383 ENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQ-LIN 426 + + L + +F + + IL ++ K Q + Sbjct: 1116 QEFSSIYVFNLRGNQRTSGELSRKEGGKIFGSGSRTPIAITILVKKRKANNLEKAQIFYH 1175 Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486 + S ++ K R + D ++ E K + R ++ + P + Sbjct: 1176 DIGDYLSREDKLKIIRQMGD--ISNPTMMWKLVEPNKHGDWISPRNEMFKLFIPIEPEKK 1233 Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546 K+ + + + ++ S + + M I Y ++IK ++ Sbjct: 1234 FAKGQKSFFDTYAIGVATNRDAWVYNSSRQRLEQNMRSMIDFYNRQREAYNDAIKVDKKL 1293 Query: 547 TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590 ++ + +KD ++ ++ ++L + Sbjct: 1294 FVESFINTDDSKISWTVNLKKD----IERNIEHNYV--SDLRDS 1331 >gi|254884184|ref|ZP_05256894.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|255013702|ref|ZP_05285828.1| putative DNA methylase [Bacteroides sp. 2_1_7] gi|254836977|gb|EET17286.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 1659 Score = 46.1 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 49/255 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F E+ +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYDYAIEKD 153 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + + + + + R + I + F F Sbjct: 154 L-----------------ISGMILSLLHENTLTRTTGFEEI------GEQGFEHTTFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K G + I + F+ + N GG Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A + S G +R +L+ + + + + LP LF +T+ + + L I Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 --RKTEERRGKVQLI 425 RK + + + Sbjct: 294 HTRKAALSQREQLFL 308 >gi|21226258|ref|NP_632180.1| type IIS restriction enzyme [Methanosarcina mazei Go1] gi|20904497|gb|AAM29852.1| type IIS restriction enzyme [Methanosarcina mazei Go1] Length = 1165 Score = 46.1 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 69/277 (24%), Gaps = 58/277 (20%) Query: 56 REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDN 110 + + + + + + F N + + L + N L Y+ + Sbjct: 103 IKVFTSTDPNKPEPDILTNALKLDFLNLNRDLVLDLKAENKDEELYKYLILKLCNYLNKI 162 Query: 111 AKAIFEDFDFSSTIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYEHLIR---- 164 +FE L LL + + I D ++ IY+ I Sbjct: 163 MPFLFEKI--EDYTELLFPDKLLHTGSVLHGLNSIIPDEDWKEVEIIGWIYQDYIAPKKD 220 Query: 165 ----------RFGSEVSEGAEDFMTPRDVVHLATA-----LLLDP--------------- 194 + E TP +V L + Sbjct: 221 KVFADLKKNIKISKENIPAVTQLFTPHWIVRYLVENSLGRLWMLNRPESSLVDRMEYYIK 280 Query: 195 ----DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------LVP 242 + K + + DP CG+G L A + + P Sbjct: 281 PEKQETDFLKINSPEEIKICDPACGSGHMLVYAFDLLYAIYEEEGYTPSEIPEMILTHNL 340 Query: 243 HGQELEPETHAVCVAGMLIRRLESD---PRRDLSKNI 276 G E++ + + ++ D + + NI Sbjct: 341 FGIEIDKRAGELAGFALAMKARGKDRRFFNKQVHPNI 377 >gi|282897536|ref|ZP_06305537.1| hypothetical protein CRD_00702 [Raphidiopsis brookii D9] gi|281197631|gb|EFA72526.1| hypothetical protein CRD_00702 [Raphidiopsis brookii D9] Length = 701 Score = 46.1 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 42/171 (24%) Query: 154 VMSNIYEHLIR--------RFGSEVS---------EGAEDFMTPRDVVHLATALLLDP-D 195 + ++YE L+ ++ S + + TP +V L+P Sbjct: 354 ELGSVYESLLDFHPQITLDKYNSSFKLVVDISSERKTTGSYYTPPSLVQELIKTALEPVI 413 Query: 196 DALFKESPGMIR-------TLYDPTCGTGGFLTDAMNHV----------------ADCGS 232 + + + D CG+G FL A + + Sbjct: 414 KEKMAQENEKTQERAILSIKVVDAACGSGHFLLAAARRLGKELAKIRTGDIQPGASSLRE 473 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282 + +G ++ P +C G+ I P L I+ G++L Sbjct: 474 AIREVIQNCIYGVDINPLAVDLCKVGLWIEGFCSGKPLNFLDHRIKCGNSL 524 >gi|212695220|ref|ZP_03303348.1| hypothetical protein BACDOR_04758 [Bacteroides dorei DSM 17855] gi|212662130|gb|EEB22704.1| hypothetical protein BACDOR_04758 [Bacteroides dorei DSM 17855] Length = 252 Score = 46.1 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + A + + DP Sbjct: 85 DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + V ML+ + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVSRTCCLMTVCNMLVHGCIGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF 292 + +L + F Sbjct: 180 ---VIHHDSLCPENFMDGWM 196 >gi|150003238|ref|YP_001297982.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC 8482] gi|149931662|gb|ABR38360.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC 8482] Length = 252 Score = 46.1 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + A + + DP Sbjct: 85 DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + V ML+ + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVSRTCCLMTVCNMLVHGCIGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF 292 + +L + F Sbjct: 180 ---VIHHDSLCPENFMDGWM 196 >gi|291086945|ref|ZP_06571733.1| conserved hypothetical protein [Clostridium sp. M62/1] gi|291076446|gb|EFE13810.1| conserved hypothetical protein [Clostridium sp. M62/1] Length = 2527 Score = 46.1 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 50/403 (12%), Positives = 108/403 (26%), Gaps = 84/403 (20%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNID---------LESFVKVAGYSF-YNTSEYSLS 89 + +R + ++ E + + + Y+F YN + + Sbjct: 822 VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAAQKKYNFHYNL--WEME 879 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHP 147 G+ I + + + + +A E+ +L K S Sbjct: 880 KGGAKTRYQWNMDAIRT--------LKQIESENRLATPEEQKVLSKFVGWGGLSQAFDEE 931 Query: 148 DTVPDRVMSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 + ++ + + E L + + + F T ++ + L+ + Sbjct: 932 NAGWNKQYAELKELLSDEEYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRG 983 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 + +P+ G G F +G EL+ + + Sbjct: 984 GNVLEPSMGIGNFFGSM----------PAPMQRSKLYGVELDSISGRIAK---------- 1023 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 + + NI + + F + N PFG D + + + Sbjct: 1024 --QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY----- 1075 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 K GG A++ + L IR+++ E Sbjct: 1076 ---------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYMAERAE 1115 Query: 387 IEAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424 + + LP F T + + L RK + V L Sbjct: 1116 LVGAIRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1158 >gi|78776679|ref|YP_392994.1| hypothetical protein Suden_0478 [Sulfurimonas denitrificans DSM 1251] gi|78497219|gb|ABB43759.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 908 Score = 46.1 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 37/209 (17%) Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--------NHVADCGSH 233 ++ + +P + DP CG+G FL A + Sbjct: 325 ELSEEFAKIKNNPKQLQIFHAKISNLKFLDPACGSGNFLVIAYRELKLVEFEVLKSLKIL 384 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR-------------DLSKNIQQGS 280 ++ I +G E+E + ML+ + + S NI + Sbjct: 385 TQLVHIDQFYGFEIEELPSRITQTAMLLIDHQMNLLFAQMFGEPHFNIPIKDSANIFNVN 444 Query: 281 TLSKDL---FTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 L D G + + + NPPF K K++ E +G + Sbjct: 445 ALRVDWEKILDGVKIDFIIGNPPFLGSKMQSKEQKEDMAEVFSGV----------KNGKE 494 Query: 336 MLFL-MHLANKLELPPNGGGRAAIVLSSS 363 + F+ + + A+V ++S Sbjct: 495 LDFVTAWYIKSAKYLQGKNTKVALVSTNS 523 >gi|86359839|ref|YP_471730.1| DNA methylase [Rhizobium etli CFN 42] gi|86283941|gb|ABC93003.1| probable DNA methylase [Rhizobium etli CFN 42] Length = 1699 Score = 46.1 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 74/283 (26%), Gaps = 60/283 (21%) Query: 153 RVMSNIYEHLI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210 + N E + + S TP V+ + + Sbjct: 141 DDLGNSLETAVSEGEYASLARCTQYAHFTPEFVIRAIWM--------GIQRLGWRGGRVL 192 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270 +P GTG F G EL+P T + + Sbjct: 193 EPGIGTGLFPALMPKQYRQLS---------YVTGIELDPVTARIVK------------QL 231 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 I G DL + + NPPF + + Sbjct: 232 QPKARIINGDFARTDL--NAIYDLAIGNPPFSDRTVRSDRQYRSLGLRLHDY-------- 281 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390 F+ + L+ G A ++S+ G + R + ++ + A Sbjct: 282 -------FIARSIDLLKP-----GALASFVTSA----GTMDKVDGTAREHIAQSADLIAA 325 Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430 + LP F T++ + RK E G V ++ ++ Sbjct: 326 IRLPEGSFRRDAGTDVVVDVLFFRKRKAGEPEGDVSWLDLEEV 368 >gi|282601441|ref|ZP_05981716.2| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM 15176] gi|282569100|gb|EFB74635.1| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM 15176] Length = 2002 Score = 46.1 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 63/252 (25%), Gaps = 57/252 (22%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TP +V+H + + +P+ G G F Sbjct: 492 AYFTPPEVIHAMYR--------ALERMGVRGGNILEPSMGIGAFF--------AHKPSSF 535 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G E++ T + + I K F Sbjct: 536 DLNSAKLYGVEIDELTGRIAR----------QLYQKARIQITG---FEKADLPDSFFDCA 582 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + N PFG + A +K H + K GG Sbjct: 583 VGNVPFG-DFSVSDRAYDKLHFRIHD-------------------YFLAKTIDKVRTGGI 622 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412 A++ +S L +R+++ + V LP F T + L Sbjct: 623 IAMITTSGTL-----DKKSDTVRKYIAARCDLIGAVRLPNTTFKQNAGTEAVADILFLQK 677 Query: 413 RKTEERRGKVQL 424 R R + L Sbjct: 678 RDRLVERDEAWL 689 >gi|241888649|ref|ZP_04775956.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] gi|241864672|gb|EER69047.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] Length = 300 Score = 46.1 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 105/311 (33%), Gaps = 59/311 (18%) Query: 116 EDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 E F S + LE + I NFS + + Y+ L+ + E++ Sbjct: 21 EGLYFDSLVNYLTLENDEDYFDIIDNFSKED----------IKKAYQFLLLKALKELN-N 69 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 +TP +V+ + + +L+ K ++ D G+G FL + Sbjct: 70 PSYDITP-EVITMYVSHILEYLYNNEKI------SVADFASGSGNFLINLSALSKGEYEL 122 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + + + +L +E I L K+ Sbjct: 123 TSVDVDNNYARLQQN-------IFNLLETNVE----------IINQDALKP--LNIKKQD 163 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +S+ PFG ++D K S ++LF+ AN L N Sbjct: 164 VIISDVPFGYYADEDNSLNYKLCSAEGY----------SLNALLFIEQAANYL----NDN 209 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 G +V+ L E +++L E+ + A++ LP ++F + + +++ + Sbjct: 210 GVGVLVVPKKVL------ELEDNFKKFLEEDINLNAVITLPDEMFKNASQQKAIILITKK 263 Query: 414 KTEERRGKVQL 424 + + +V L Sbjct: 264 EQTKLPNQVFL 274 >gi|260771707|ref|ZP_05880626.1| hypothetical protein VIB_000146 [Vibrio metschnikovii CIP 69.14] gi|260613291|gb|EEX38491.1| hypothetical protein VIB_000146 [Vibrio metschnikovii CIP 69.14] Length = 46 Score = 46.1 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 2/42 (4%) Query: 4 FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRR 43 L +W + L ++ +L TLLR Sbjct: 2 NQQQIKQLETKLWVSTNSLRANSKLTAAEYKDPVLGLTLLRY 43 >gi|187780115|ref|ZP_02996588.1| hypothetical protein CLOSPO_03711 [Clostridium sporogenes ATCC 15579] gi|187773740|gb|EDU37542.1| hypothetical protein CLOSPO_03711 [Clostridium sporogenes ATCC 15579] Length = 743 Score = 46.1 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 60/223 (26%), Gaps = 36/223 (16%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFDFSSTIARL--EKAGLLYKI 136 +L L N +I F DN K ++ DF L L KI Sbjct: 90 NLVNLVFNNVDKKFLEFI--FKDNIKYEHINPSYYSLDNVDFLHYEDNLFYRYNIFLNKI 147 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + + IYE +I E + F TP ++ + Sbjct: 148 IDEINKFDFI---HSSGEIGEIYEKII---AKEYKKSMGIFYTPEHIIDYILENVFYE-- 199 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA----DCGSHHKIPPILVPHGQELEPETH 252 F + D + G G F+ A + + + + + + T Sbjct: 200 --FSPLENPFVKVIDISAGAGYFIIKAYDKLEKIFLENIKGLQEKYKENIYTIKKRDVTI 257 Query: 253 AVC------VAGMLIRRLE----SDPRRDLSKNIQQGSTLSKD 285 V + + + + I + L KD Sbjct: 258 NVTGEYYWQKENLHYHIINNCIYAADIDIYATQIISINLLLKD 300 >gi|162455958|ref|YP_001618325.1| putative DNA methylase [Sorangium cellulosum 'So ce 56'] gi|161166540|emb|CAN97845.1| putative DNA methylase [Sorangium cellulosum 'So ce 56'] Length = 1197 Score = 45.7 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 94/327 (28%), Gaps = 80/327 (24%) Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 G+ + R + ++Y+ L V E TP V L LDP A F Sbjct: 170 GLCWRFEGSDTRFLGDLYQDL----SPSVRERYALLQTPDFVGAFILDLTLDPAIATFGL 225 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCG---------SHHKIPPILVPHGQELEPETH 252 L D TCG+G FL DA + + H + HG ++ P Sbjct: 226 EET---HLIDATCGSGHFLLDAFERICEHRMRTAPGIDVREHAAAALGQVHGVDINPYAV 282 Query: 253 AVCVAGMLIRRLESDPRRDLSK-------NIQQGSTLSK--------------------- 284 A+ +++ + L++ + +L Sbjct: 283 AIAKFRLMLAYMAKAELGTLAEVPQRLPIEVVVADSLLHGVVGTTRRFAELEGQRAEAWG 342 Query: 285 ------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 D G+++ + NPP+ + ++H + P Sbjct: 343 QPMFELEDQDASDRVFGRKYQAVVGNPPYIVPRDDGPRDEYRKHYRSCHRGYSLSAP--- 399 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL----IE 388 +L GGG ++ ++S + E + L+E L + Sbjct: 400 ---------FTERLFQLAEGGGYVGLINANSFMKR--------EFGKKLIEEVLAHLDLT 442 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKT 415 I+ T + N++ Sbjct: 443 RIIDTSGAYVPGHGTPTVILFGRNQRP 469 >gi|134287507|ref|YP_001109674.1| SNF2-related protein [Burkholderia vietnamiensis G4] gi|134131929|gb|ABO60623.1| SNF2-related protein [Burkholderia vietnamiensis G4] Length = 2273 Score = 45.7 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 80/267 (29%), Gaps = 55/267 (20%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 ++ ++ TP+ + LL + ++ DP+ G GG T Sbjct: 137 ADGLTGSPHEYYTPKAIASAMWDLLGE--------LGFAGGSVLDPSAG-GGVFTAT--- 184 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 P Q ET LI + ST Sbjct: 185 ----------RPKTAVMTQVELDETS--GTINGLINDGPTVNTTVSPFEAIAAST----- 227 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + + ++N PFG + + + RF ++ F++ KL Sbjct: 228 -PDEIYDAVITNVPFGNNAMRGGNE-------KKDARFQ-----KANLQEYFVLRTLQKL 274 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNI 403 + GG AA ++ S + A R+ L L+ V LP +F Sbjct: 275 KP----GGLAAFIVPKSVVSGTGAKE-----RKLRLNASLMAEFVGGYRLPNSIFTTAAA 325 Query: 404 A-TYLWILSNRKTEERRGKVQLINATD 429 T I+ + + KV+ + A + Sbjct: 326 DVTTDLIVFRKFSRATAQKVEELQAQN 352 >gi|317154910|ref|YP_004122958.1| type I restriction system adenine methylase [Desulfovibrio aespoeensis Aspo-2] gi|316945161|gb|ADU64212.1| type I restriction system adenine methylase [Desulfovibrio aespoeensis Aspo-2] Length = 129 Score = 45.7 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 16/26 (61%) Query: 11 LANFIWKNAEDLWGDFKHTDFGKVIL 36 + ++K A+ L G+ + +D+ V+L Sbjct: 98 IEAELFKTADKLRGNMEPSDYKHVVL 123 >gi|150400052|ref|YP_001323819.1| N-6 DNA methylase [Methanococcus vannielii SB] gi|150012755|gb|ABR55207.1| N-6 DNA methylase [Methanococcus vannielii SB] Length = 1041 Score = 45.7 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 64/222 (28%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI------------------PPILVPHGQE 246 + DP CG+G FL A+N++ G+ +G + Sbjct: 493 KNIKILDPACGSGAFLIQALNYLVKEGNQVNKIISYLQGGTTALFNLKADILRNNLYGVD 552 Query: 247 LEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLF-----------------T 288 L E+ + + + +E + L NI+ G++L D+ Sbjct: 553 LNAESVEITKLSLWLNSVEKGEKLTALDNNIKCGNSLIDDMNVAGDKAFKWEEEFKEIIE 612 Query: 289 GKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNG------ELGRFGPGLPKISDGSMLFLMH 341 F + NPP+G K +++ + ++ G +F G Sbjct: 613 NGGFDVVIGNPPYGAKLSTVEQNYLINKYIQGGGETVISFLKFSYGT------------- 659 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 GG ++ S +F+ S S ++ + E Sbjct: 660 --------IKNGGYLGFIIPKSFIFSSNYQSIRSYLKEDIFE 693 >gi|307296716|ref|ZP_07576535.1| restriction methylase [Sphingobium chlorophenolicum L-1] gi|306877845|gb|EFN09070.1| restriction methylase [Sphingobium chlorophenolicum L-1] Length = 615 Score = 45.7 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 36/233 (15%) Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + P ++++Y L+ + F TP + L + Sbjct: 114 EVAFLPVLEGCHFLTSLYTTLL---PGKERSALGAFYTPPALTQRLLDLATEGGVD---- 166 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-----IPPILVPHGQELEPETHAVCV 256 + DP G G FL +A + + G EL+P + Sbjct: 167 --WSTARVLDPASGGGAFLLEAAARMRRALEGSEPAFILAQLGTRLTGFELDPHAAGLSQ 224 Query: 257 AGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 A + L+ L + R ++ TL + + + + NPP+G+ Sbjct: 225 AALEVLLADLCAASGRAAPTFVKVCDTL--EATPAELYDLVVGNPPYGRVTLTV------ 276 Query: 315 EHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPL 365 + R G ++ +F GG A + +S L Sbjct: 277 -AQRSRYARSLYGH-----ANLYGVFTDIALRWTRP----GGVIAYLTPTSVL 319 >gi|57640916|ref|YP_183394.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus kodakarensis KOD1] gi|57159240|dbj|BAD85170.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus kodakarensis KOD1] Length = 331 Score = 45.7 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 75/258 (29%), Gaps = 55/258 (21%) Query: 127 LEKAGLLYKIC--KNFSGIELHPDTVPDRVMS-NIYEHL-IRRFGSEVSEGAEDFMTP-- 180 L+ L + + F PDTV +Y + +R F + E + P Sbjct: 101 LDLPRKLGAVIHAQGFRVNLSKPDTVVRVYCGERLYAGIRLRYFDPKDFEKRKAHHRPFF 160 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 R + L R + DP G GG L +A L Sbjct: 161 RPIS------LHPRVSRALVNLTKATREILDPFMGAGGILIEAG------------LLGL 202 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 +G ++ PE + + + T +DLF K+F ++PP Sbjct: 203 RVYGVDIRPEMVEGAETNLKHYGVRDYTLKLGDA------TRLEDLFPDKKFEAVATDPP 256 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 +G GR L + + + GGR AI Sbjct: 257 YGTAA-------------TLAGRKRDELYRKA----------LRSIYNVLEDGGRLAIAF 293 Query: 361 SSSPLFNGRAGSGESEIR 378 FNG+A + R Sbjct: 294 P--TDFNGKAEAEAVGFR 309 >gi|299822755|ref|ZP_07054641.1| adenine-specific methyltransferase [Listeria grayi DSM 20601] gi|299816284|gb|EFI83522.1| adenine-specific methyltransferase [Listeria grayi DSM 20601] Length = 335 Score = 45.7 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 42/258 (16%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 MTP + + + + DP CGTG L+ N + Sbjct: 93 GIQTNHQMTPDSIGFILAYFI------EKLTKEKAEVAILDPACGTGNLLSTITNQL--- 143 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLFTG 289 ++ + + V +LI L S + ++ LS Sbjct: 144 -----------LLTKDKVVQATGIEVDDLLISLALVSSDLQGQRTHLLHQDGLSN--LLV 190 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 +S+ P G + D+ A E K F LF+ + Sbjct: 191 DPADIVVSDLPVGY-YPDDERANTYELKQASGHSF---------AHYLFIEQGMRYTKP- 239 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409 GG ++ S A S + R++ ++ ++ I+ LP LF + I Sbjct: 240 ---GGYLFFLIPDSMF----ADSEFPRVDRFIKKHGHMQGIIKLPETLFKSEQSRKSILI 292 Query: 410 LSNRKTE-ERRGKVQLIN 426 L + E + +V L N Sbjct: 293 LQKQSAETKAPKEVLLAN 310 >gi|134101640|ref|YP_001107301.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338] gi|291003192|ref|ZP_06561165.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338] gi|133914263|emb|CAM04376.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338] Length = 1218 Score = 45.7 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 70/276 (25%), Gaps = 53/276 (19%) Query: 35 ILPFTLLRRLECA------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88 +L +R E + + + + + +L Sbjct: 83 VLGTVFVRFCEDNGLIPDPFLAGWGERLAEAEERHEAYFRERP--QDNDRDWIIAAFDTL 140 Query: 89 STLGSTNTRNNLESYIASFSDNAK---AIFEDF----DFSSTIARLEKAGLLYKICKNFS 141 + T F N I F D R + +F+ Sbjct: 141 AAAHPTAKG--------LFDRNHNPLWEITPSFEAASDLIRFWRRRGDN---GHVHHDFT 189 Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 EL R + ++Y++L + TP V L L P F Sbjct: 190 DPEL-----DTRFLGDLYQNL----SENARKTYALLQTPEFVEEFVLDLTLTPAIEEFGL 240 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQELEPETH 252 DP CG+G FL + + + HG + P Sbjct: 241 D---GLRTIDPACGSGHFLLGIFDRLLTRWRAKEPGTDSWTLIRRSLESVHGCDKNPFAV 297 Query: 253 AVCVAGMLIRRL------ESDPRRDLSKNIQQGSTL 282 ++ +L+ L D + N+ G +L Sbjct: 298 SIARFRLLVAALRAAGDARLDGAAEFPINVAVGDSL 333 >gi|319639900|ref|ZP_07994629.1| hypothetical protein HMPREF9011_00226 [Bacteroides sp. 3_1_40A] gi|317388564|gb|EFV69414.1| hypothetical protein HMPREF9011_00226 [Bacteroides sp. 3_1_40A] Length = 860 Score = 45.7 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 49/214 (22%) Query: 128 EKAGLLYKICKN--FSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDF 177 ++ L+ I F+ E P+ ++ ++E+L+ + E E + F Sbjct: 376 DEKRGLFSILNKYNFTIEENTPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSF 435 Query: 178 MTPRDVVHLATA-----LLLDPDDALFKESPGMIR------------------TLYDPTC 214 TPR++V L + D +P + DP C Sbjct: 436 YTPREIVKYMVDESLIAYLGESDFNRSLFAPNFKYEVAHVEEYKSIAEKLKAVKVLDPAC 495 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRL 264 G+G F +N +A+ ++ + +G +++ + I + Sbjct: 496 GSGAFPMGLLNRMAEVLQRIELNTNVYEQKLAIIENCLYGSDIQSIAAQITKLRFFISLI 555 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 R N + +N Sbjct: 556 VDCERDASKPN------FGIPTLPNLETKFVAAN 583 >gi|146280356|ref|YP_001170511.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17025] gi|145558597|gb|ABP73206.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17025] Length = 908 Score = 45.7 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 77/243 (31%), Gaps = 47/243 (19%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-LLLDPDDALFKESPGMIRTLYDPT 213 +SNIY+ ++ S TP +V L L G+ + DP Sbjct: 266 ISNIYQLFVKDAASS-------IYTPPALVRLILEEALSWERLDTLMAGDGV---ILDPA 315 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETHAVCVAGMLIRR 263 CG+G FL +A + H HG ++E + + + Sbjct: 316 CGSGVFLVEAYKRLVLHWRLHNGWARPGIADLRSLLQRVHGVDIEEGAIELAAFSLCLSL 375 Query: 264 LESDPRRDLSKNIQQGSTLSKD-------------LFTGKRFHYCLSNPPFGKKWEKDKD 310 ++ ++ ++Q L+ + + NPPF + Sbjct: 376 CDALQPEEIRASVQLFPALANETLHWSCFFEAKEQGLIKAPVAVLVGNPPF-------ES 428 Query: 311 AVEKEHKNGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 A++ E R+ GL + + LFL L G A+V + L+N Sbjct: 429 ALKTEGAKRSYTRYSKDHGLLADTQLAYLFLHDAMELLAPK----GIVALVEPAGFLYNQ 484 Query: 369 RAG 371 + Sbjct: 485 NSA 487 >gi|261879784|ref|ZP_06006211.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333544|gb|EFA44330.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 2069 Score = 45.7 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 58/412 (14%), Positives = 122/412 (29%), Gaps = 94/412 (22%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH------VADCGSHHKIPPILVPHG 244 ++ IR DP+ G G F + +I + P+G Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMGAFTETFAKRAGMVDAMEKDLLTARISQAIHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 Q +++R+ + +L ++ SN PFG Sbjct: 171 QG-----------NIIVRQEPFEAIGELKD--------------KDKYDLVTSNIPFG-- 203 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D ++E+ G+ I + + K GG A + S Sbjct: 204 ---DFMVYDREYSKGKDVLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 L + R IRR+L++N + + + LP+ +F T++ + L +L + Sbjct: 254 LDSPRNE----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQ-------- 301 Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--------DYRTF 473 + I++ +Q ++ + S + D++ Sbjct: 302 ------------------TGKEISEGIEQQFVETLSVPKEEGSSVVFKHNSLFVGDWKDI 343 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 +R I R + D + ++ ++ ++ + Sbjct: 344 SHRTIATERIMGTDPYGKPA--WEYRFDGSIDDMAESIRTQLSLEVEQRFDRKLYETGIP 401 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585 +E K E + K+ ++DP+ D D +PD+ Sbjct: 402 MTEEERQKEAEKQLHKL--------GITVDLPKEDPKTDKEADNAYNLMPDS 445 >gi|303241342|ref|ZP_07327846.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302591075|gb|EFL60819.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 1570 Score = 45.7 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 4/130 (3%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I R E + + TP + L + T+ +P G+ FL Sbjct: 519 FIYRLAGREREKSASYYTPEVLTKCLVKYALKELLEDKTADEILELTICEPAMGSAAFLN 578 Query: 222 DAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI-Q 277 +A+N +A+ K + + E + + +A + ++ +P + Sbjct: 579 EAINQMAEAYIDKKQKELGDNISYENRNQEIQRVKMYIADRNVYGIDLNPIAVELAEVSL 638 Query: 278 QGSTLSKDLF 287 +T+ KD F Sbjct: 639 WLNTIYKDGF 648 >gi|260583299|ref|ZP_05851074.1| adenine specific DNA methyltransferase [Haemophilus influenzae NT127] gi|260093659|gb|EEW77572.1| adenine specific DNA methyltransferase [Haemophilus influenzae NT127] Length = 1054 Score = 45.7 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 57/435 (13%), Positives = 130/435 (29%), Gaps = 105/435 (24%) Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 NL SYI+ + + + + L + L K T + + + Sbjct: 253 NLFSYISGV-----ELDDRIKW--IVDHLVE-IFLCSDVKKILENYGR-STKTNEPIIHF 303 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD------PDDALFKESPGMIRT---- 208 YE + + S + + + TP VV+ + D + + Sbjct: 304 YETFLSEYDSSLRKARGVWYTPAPVVNFIVRAVDDILKTEFGLADGLADDSKITIQEDVA 363 Query: 209 ---------------------LYDPTCGTGGFLTDAMNHVADCG---------SHHKIPP 238 + DP GTG FL+ + H+ S+ + Sbjct: 364 TKKRGGGSKLVKIDKEVHRVQILDPATGTGTFLSSVVKHIYANHFANMGGMWSSYVEENL 423 Query: 239 ILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTL-------------- 282 I +G E+ ++A+ +L+ ++ I ++L Sbjct: 424 IPRLNGFEILMASYAMAHLQLDLLLTSQGYQHTKNQRFKIYLTNSLEEYHEDTGTLFTSW 483 Query: 283 -------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + + + NPP+ + ++ + + + Sbjct: 484 LSNEANEANYIKRDTPVMVVMGNPPYSVSSNNKSSWILNLLEDYKKNLNE----RKINLD 539 Query: 336 MLFLMHL-ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVAL 393 ++ + + + N G A + ++S + G ++R+ LLE+ D I I+ L Sbjct: 540 DDYIKFIRYGQYFIDKNENGILAYISNNSFI----DGITHRQMRKSLLESFDKIY-ILDL 594 Query: 394 ----------PT-----DLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 P ++F ++ +++ + +K ++ +V Sbjct: 595 HGSTKKKEESPDGSKDENVFDIMQGVSINIFVKTGKKNKDDLAQVF------HCDLYGKR 648 Query: 438 GKKRRIINDDQRRQI 452 K ++ND I Sbjct: 649 DDKYNLLNDQSLDSI 663 >gi|301308515|ref|ZP_07214469.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3] gi|300833985|gb|EFK64601.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3] Length = 252 Score = 45.7 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 28/140 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + + + DP Sbjct: 85 DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGE-------TAAGKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + V ML+ + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLIAEDVSRTCCLMTVCNMLVHGCIGE----- 179 Query: 273 SKNIQQGSTLSKDLFTGKRF 292 + +L + F Sbjct: 180 ---VIHHDSLCPENFMDGWM 196 >gi|240169376|ref|ZP_04748035.1| putative type II DNA modification enzyme [Mycobacterium kansasii ATCC 12478] Length = 1361 Score = 45.7 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 40/216 (18%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLI- 163 FS +A +I E + A L L +I +G D + + +YE L+ Sbjct: 404 FSRDALSILEGAKLPNR-AFLAAVRALAQIEDPVTGTPRPVDYRNLDSEELGGMYESLLA 462 Query: 164 ---RRFGSE-----------VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-- 207 R + + + + TP +++ L L+P S Sbjct: 463 YTPRYNADDRTFTLDVATGSERKKSGSYYTPSELIALVLDEALNPLIDEALRSADPEAAL 522 Query: 208 ---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----------------LVPHGQELE 248 ++ DP CG+G F+ A +A + + +G +L Sbjct: 523 LDLSVVDPACGSGHFVVAAARRIAAALATVRTGDTEPAPAALRAATADVIEHCVYGVDLN 582 Query: 249 PETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283 + + + ++D P L + + G+ L Sbjct: 583 DLAIEITKVALWLEAFDADRPFPFLDSHFRVGNALL 618 >gi|148656016|ref|YP_001276221.1| hypothetical protein RoseRS_1882 [Roseiflexus sp. RS-1] gi|148568126|gb|ABQ90271.1| hypothetical protein RoseRS_1882 [Roseiflexus sp. RS-1] Length = 1422 Score = 45.7 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 48/175 (27%), Gaps = 44/175 (25%) Query: 151 PDRVMSNIYEHLIRR-----------------FGSEVSEGAEDFMTPRDVVHLATALLLD 193 + ++YE L+ FGSE + + TP +V+ L Sbjct: 441 DTEELGSVYESLLDYHPAITFDTRGRPTFVLTFGSE-RKATGSYYTPPSLVNELVQSALA 499 Query: 194 PDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHV----------------A 228 P R + DP CG+G FL A + Sbjct: 500 PVLEERLRPCRTAREKEAALLALNVLDPACGSGHFLLAAARRLGKELARIRTGEDEPAPE 559 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282 + +G + P + + + E P L I+ G +L Sbjct: 560 RVREAIRDVVAHCIYGVDRNPLAVELARVALWLESHAEGKPLTFLDHRIKCGDSL 614 >gi|257064108|ref|YP_003143780.1| predicted helicase [Slackia heliotrinireducens DSM 20476] gi|256791761|gb|ACV22431.1| predicted helicase [Slackia heliotrinireducens DSM 20476] Length = 1847 Score = 45.7 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 92/324 (28%), Gaps = 52/324 (16%) Query: 40 LLRRLECALEP--TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ L +L T + + E+ + A ++ N ++ + Sbjct: 998 FLKGLRDSLNDGITEPEAVDMLAQHIITLPVFEALFRGAQFADSNPVSIAMEKMI----- 1052 Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157 + L Y D + + E LY+ + +H D+ R++ Sbjct: 1053 DALREYTLETEDEKRELAE----------------LYRSVE-IRAESIHTDSGRQRIIKE 1095 Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLA---TALLLDPDDALFKESPGMIRTLYDPTC 214 +YE + ++ SE TP +V T LL + G+ + DP Sbjct: 1096 LYEKFFSQAFTKTSEKMGIVYTPNQIVDFILRSTNALLHHEFGQTFADEGVH--ILDPFT 1153 Query: 215 GTGGFLTDAM-NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-- 271 GTG F+ + + + + H E+ + + + S D Sbjct: 1154 GTGTFIVNLLNDDALMPSDKIEYKYANELHCNEIMLLAYYIATIN-IEHAYHSRIEGDYI 1212 Query: 272 LSKNIQQGSTLSK----DLFTGKRF---------------HYCLSNPPFGKKWEKDKDAV 312 T D + F + NPP+ + D Sbjct: 1213 PFPGAVLTDTFQMTEEGDPLDLEVFTQNSKRVVEQNRLPVRVIIGNPPYSIGQKNANDNN 1272 Query: 313 EKEHKNGELGRFGPGLPKISDGSM 336 + GR K S+ + Sbjct: 1273 QNMKYKTLDGRISDTYAKQSEAGL 1296 >gi|332346202|gb|AEE59536.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 228 Score = 45.7 bits (107), Expect = 0.027, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L F TP V + + L ALF++ + TL +P Sbjct: 85 DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFEDKSFI--TLREP 137 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G + + + G + +++P + + + + + Sbjct: 138 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 195 Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294 S ++ L + Y Sbjct: 196 SLCNERRRVLLTPGHYLGNWSY 217 >gi|255292505|dbj|BAH89620.1| type II restriction enzyme, methylase subunit [uncultured bacterium] gi|255292795|dbj|BAH89899.1| type II restriction enzyme, methylase subunit [uncultured bacterium] gi|255293039|dbj|BAH90134.1| type II restriction enzyme, methylase subunit [uncultured bacterium] Length = 629 Score = 45.7 bits (107), Expect = 0.027, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 81/301 (26%), Gaps = 68/301 (22%) Query: 1 MTEFTGSAASLAN--FIWKN----AEDLW---------GDFKHTDFGKVIL---PFTLLR 42 M G+ A L N I A L GD T I+ FT+L Sbjct: 36 MDPNAGTVAQLTNLRHINDAQRETARILRDTLAHYTASGDMNATQGLDRIVREQAFTVLN 95 Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 RL A A G +++ + G+ Y + R L S Sbjct: 96 RL---------AALRMAEARGLLVESVDNGFQAKGFQLYARLAGTGLGETGDAYRTYLFS 146 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 S + +F+ + S + L ++ + ++ P D + IY++ Sbjct: 147 VFDELSQDLPGLFDRY--SPQGRLFPREAALLQVLNLINAADIAPLWREDETIGWIYQYF 204 Query: 163 IRRFGSEVSEGAED-------------FMTPRDVVHLATA-------------------- 189 + + A F TPR VV Sbjct: 205 NSKEERKAMRDASQAPRNSRELAVRNQFFTPRYVVEFLVDNTLGRLWFNATGGQTVLRER 264 Query: 190 ---LLLDPDDALFKES---PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 LL+ PD+ L DP CG+ F A + + Sbjct: 265 CQYLLVKPDEQPQATERLRDPRTLKLLDPACGSMHFGLYAFDLFLEIYREAWAWEEQHGP 324 Query: 244 G 244 G Sbjct: 325 G 325 >gi|219364571|ref|YP_002455624.1| hypothetical protein BafACA1_AB32 [Borrelia afzelii ACA-1] gi|216752826|gb|ACJ73483.1| hypothetical protein BafACA1_AB32 [Borrelia afzelii ACA-1] Length = 1058 Score = 45.7 bits (107), Expect = 0.027, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 86/288 (29%), Gaps = 40/288 (13%) Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV------- 150 NN++ +I S + I + + I + L I + + D Sbjct: 250 NNIKEFIPSNFSLIRDIL---NLINDIGVNREYNSLKWILEEIINVVNSIDAELIFNEFS 306 Query: 151 -------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 YE + ++ + + + + TP VV+ + L FK Sbjct: 307 FTRTTLISKDPYLYFYEDFLAKYDANLRKAKGVYYTPSPVVNFIVSSLQKVLKKEFKLEL 366 Query: 204 GM----IRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPET 251 G T+ D GTG FL + + + D + + +G E Sbjct: 367 GFATRDKVTVLDFATGTGTFLLEVIKAILDKITEKSGKRPEYIDNHILKNIYGFEYLMAP 426 Query: 252 HAVCVAGM---LIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 +AV + L D + ++ + +TL ++ P + + Sbjct: 427 YAVAHLKLSQYLKEVCNVDFDNERTRLQVFLTNTLDITKIPDQKG--LAGFFPAISEENE 484 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + V+ + LG ++ + N ++ G+ Sbjct: 485 LTNEVKHKEILVILGNPPYSTGSKNNNEY-----ILNLMKKYKEIEGK 527 >gi|255015106|ref|ZP_05287232.1| putative helicase [Bacteroides sp. 2_1_7] Length = 1656 Score = 45.7 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 76/283 (26%), Gaps = 34/283 (12%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185 + +L K +N D + + + N+YE + + + TP + V Sbjct: 844 KDTEVLNKFYENVRMNVGDIDNLEGKQTLIKNLYEKFFKGAFPKTVDKLGIVYTPVECVD 903 Query: 186 LATALLLDPDDALFK-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + D F + DP GTG F+T + + H Sbjct: 904 FIIHSVDDILRKEFDCSLSDENVHILDPFTGTGTFITRLLQSGLIRPEDLERKYKNEIHC 963 Query: 245 QELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK------------------ 284 EL + + + + L + I T Sbjct: 964 NELVLLAYYIADVNIESVFHSLVKRDTYLPFEGICLTDTFQTTENEENVLDQTWFPENAA 1023 Query: 285 --DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFL 339 D + NPP+ + D + R K + + + L+ Sbjct: 1024 NVDKQKKAPVRVIMGNPPYSVGQKSANDNAQNLSYAHLDKRIAETYAKAAQATNKNSLYD 1083 Query: 340 MHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 ++ GG A + + + + +G A G + Sbjct: 1084 SYIKAFRWASDRIADCKDGGVVAFISNGAWI-DGNAQEGFRKC 1125 >gi|307701270|ref|ZP_07638291.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307613431|gb|EFN92679.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 933 Score = 45.7 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 74/280 (26%), Gaps = 79/280 (28%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD----ALFKESP 203 + + I+E + E T + +H L D A +E+P Sbjct: 304 SQISPTIFGGIFESTL---NPETRSQGGMHYTSPENIHKVIDPLFLDDLKAELAAVEETP 360 Query: 204 GMIR-----------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239 G+ DP G+G FLT+ + + Sbjct: 361 GLTPRQKTNRYKDFHHKLCSLKFLDPASGSGNFLTETYLQLRHLENQVLFKLQSGQAAMA 420 Query: 240 -------------LVPHGQELEPETHAVCVAGMLIR--------------RLESDPRRDL 272 +G E+ V A + I + D Sbjct: 421 LGEDQATGQRVSLSQFYGIEINEFAVKVAEAALWISRLKANGEPGMISADNNKHDFPLLE 480 Query: 273 SKNIQQGSTLSKDL---FTGKRFHYCLSNPPFG------KKWEKDKDAVEKEHKNGELGR 323 NI + LS D + Y L NPPF K + + AV KN Sbjct: 481 HANITCANALSLDWNQVLPAGQCTYVLGNPPFIGARNQVKAQKAELQAVFHHAKN----- 535 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + + +L + N G R A V ++S Sbjct: 536 -------SGNIDYVACWYLKAAEYMQLNPGVRTAFVSTNS 568 >gi|213962067|ref|ZP_03390332.1| adenine specific DNA methyltransferase [Capnocytophaga sputigena Capno] gi|213955420|gb|EEB66737.1| adenine specific DNA methyltransferase [Capnocytophaga sputigena Capno] Length = 1002 Score = 45.7 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 61/232 (26%), Gaps = 59/232 (25%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + YE + F +V + + TP VV+ L F G+ Sbjct: 293 KDASKDPIVHFYEDFLEAFDPQVRKDLGVWYTPLPVVNFMVRTLDTLLKEQFHLPQGIAD 352 Query: 208 T---------------------------LYDPTCGTGGFLTDAMNHVADCGSHH------ 234 T + DP GTG FL + ++A + Sbjct: 353 TSKIKVQTQQDNKIAGFDIEEKEYHRVQILDPATGTGTFLAQIIEYIAQQFASQQGIWQN 412 Query: 235 --KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286 + + +G EL ++A+ ML+ + I ++L + Sbjct: 413 YVQEHLLPRLNGFELLMASYAIAHLKLDMLLS-QTQITQSTNRIQIYLTNSLEEPTPDRS 471 Query: 287 -----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 + NPP+ + ++ + Sbjct: 472 LPLARWLSDEANEANRIKRDTPVMCIIGNPPYNGSSTNKGSWIMNLMEDYKK 523 >gi|213423394|ref|ZP_03356381.1| hypothetical protein Salmonentericaenterica_38422 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 272 Score = 45.7 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 8/102 (7%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 E A + ++ S + + + P + IY + + TP V + Sbjct: 178 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 229 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + L T+ DP G G + + + Sbjct: 230 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLE 271 >gi|298482759|ref|ZP_07000943.1| DNA methylase [Bacteroides sp. D22] gi|298271222|gb|EFI12799.1| DNA methylase [Bacteroides sp. D22] Length = 1346 Score = 45.7 bits (107), Expect = 0.029, Method: Composition-based stats. Identities = 68/384 (17%), Positives = 121/384 (31%), Gaps = 72/384 (18%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ A F + +R+ +P+ G GGFL AM+ D Sbjct: 98 AFYTP----KFLVDAVVRQIHATFSGNGLTMRSFLEPSAGIGGFLPVAMSGTYD------ 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +A+ ++ + S + T+ + F +F Sbjct: 148 ----------------YAIEK-DLVSGLILSLLHENTITRTTGFETIDRQDFEHTKFDVI 190 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG + + K G G + I + + K N GG Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN-------YFFVKAVELLNEGGL 237 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A V S G +R +L+ + + + V LP LF +T+ + + L I Sbjct: 238 LAFVTSRGIADT----PGNKFVREYLVNHADLISAVRLPDMLFMQTSGIEVGSDLLIFQK 293 Query: 413 R--KTEERRGKVQLI---------------NATDLWTSIRNEGKKRRIINDDQRRQILDI 455 K + + + +A ++T + I +Q + + Sbjct: 294 HTQKAVLSQREQLFLQVSREKADTTGTMTEHANKIFTLPKTTLATGSRIVQNQYGKYVRK 353 Query: 456 YV-SRENGKFSRMLD---YRTFG-YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510 Y + S+ L FG Y R + + + L ++ K P Sbjct: 354 YQWQGDENAMSQYLAALLKLDFGRYFRKSLFTGGGQDGVYTQ---MSLFGNVAAIKQPPK 410 Query: 511 HQSFWLDILKPMMQQIYPYGWAES 534 + + D LKP M+ + E Sbjct: 411 GKRAYTDELKPWMKDGAMLLFEEQ 434 >gi|119513547|ref|ZP_01632565.1| adenine specific DNA methyltransferase [Nodularia spumigena CCY9414] gi|119461796|gb|EAW42815.1| adenine specific DNA methyltransferase [Nodularia spumigena CCY9414] Length = 835 Score = 45.4 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 24/175 (13%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-------DTVPDRVM 155 YI+ K +F+ + +++++ K+ + + + + +++ +T + + Sbjct: 240 YISDRIPFLKGLFDIVIATDSVSKIHKS--IENLVELLNTVDMTNILETFGQETRTEDPV 297 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESPGMIRTLY 210 + YE + + +++ + + TP VV+ L+ + L T+ Sbjct: 298 IHFYETFLAAYEAKLRKSRGVYYTPEPVVNFIVRAVNDILVNEEIFDLQHGLGNRKVTIL 357 Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVC 255 DP GTG FL + + D S + I G EL + + Sbjct: 358 DPATGTGTFLYAVIKQIRDNVSKYGIDKWNTFLRDAKLINRLFGFELLMTPYTIA 412 >gi|269126191|ref|YP_003299561.1| putative type II DNA modification enzyme [Thermomonospora curvata DSM 43183] gi|268311149|gb|ACY97523.1| putative type II DNA modification enzyme [Thermomonospora curvata DSM 43183] Length = 1055 Score = 45.4 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 63/227 (27%), Gaps = 52/227 (22%) Query: 109 DNAKAIFEDFDFSSTIAR--LEKAGLLYKI-----CKNFSGIELHPDTV---PDRVMSNI 158 IF D + L+ A L + ++ P + + Sbjct: 133 PALGGIFARTDADRVLEDTELDDADLCAAVRALSQIRHGRPARPRPIDFCRLDVAELGAL 192 Query: 159 YEHLIRR------------F----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E L++ F + + TP +V LDP ++ Sbjct: 193 HESLLKHRPCRQSAARRRAFVLLPAGTGRKSGGSYYTPPALVDCLLDSALDPLLDEAVKT 252 Query: 203 PGMIR---------TLYDPTCGTGGFLTDAMNHVAD----------------CGSHHKIP 237 R T+ DP CG+G FL A +A + Sbjct: 253 GRTRREQERALLALTVCDPACGSGRFLVAAAGRIARRLAFVRTGDPQPPPAALRRALRET 312 Query: 238 PILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLS 283 +G +L+P + + + P R + I+ G+ L Sbjct: 313 LTTCVYGVDLDPLAVELAKVALWLETGEPGRPLRSWDERIKVGNALL 359 >gi|120536967|ref|YP_957025.1| helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120326801|gb|ABM21110.1| helicase domain protein [Marinobacter aquaeolei VT8] Length = 2570 Score = 45.4 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 66/226 (29%), Gaps = 49/226 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 L+ P + + +P+CG G F P + G EL+ Sbjct: 918 LIGPMWEALDRMGLPLNRVLEPSCGIGNF--------KAFMPESVAPKVKSFTGIELDRY 969 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 T + A I Q S + F F +SN PFG D Sbjct: 970 TARLAQA------------AHPDARILQ-SGFERTSFPDSFFDTVISNIPFGD--YGMFD 1014 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 E + F + +K+ GG A + S+ L Sbjct: 1015 PEHPERRTTIHN--------------AFFLKGLDKVRP----GGVVAFITSAYVL----- 1051 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 ++ +R+ +++ + LP F T + T + L + Sbjct: 1052 DGKDTAVRKEIMDRAHVMGTYRLPAGTFEKTTGTEVVTDVIFLQKK 1097 >gi|298370200|ref|ZP_06981516.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281660|gb|EFI23149.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314] Length = 1493 Score = 45.4 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 87/330 (26%), Gaps = 54/330 (16%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGT 216 +Y+ R ++E TP +VV + D FK S + DP GT Sbjct: 892 LYDKFFRNAFPRMTERLGIVYTPVEVVDFIIKSVEDVLQHEFKSSLQDKGVHILDPFTGT 951 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPR 269 G F+T + H E+ + + +L ++ + Sbjct: 952 GTFITRLLQSGIIPRDRLPEKYKNEIHANEIVLLAYYIATINIESAYHGILAGNIDGNVS 1011 Query: 270 RD----LSKNIQQGSTLSKDLFTGK------------------RFHYCLSNPPF--GKKW 305 D + I T + NPP+ G++ Sbjct: 1012 DDVPYVPFEGICLTDTFQMYEKGDMLDEMLVDNSARRKRQKALDIRVIIGNPPYSAGQES 1071 Query: 306 EKDKDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 D +A + R + + + G V ++ Sbjct: 1072 ANDNNANIEYPHLDARIRQTYAEHSTATLKNALYDSYIRAIRWASDRIGQQGVIGFVTNA 1131 Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYL 407 + A +R+ L E I L + +F + + Sbjct: 1132 GWVEANTADG----LRKCLAEEFSSLYIFHLRGNQRTSGERSRKEGGKIFGSGSRAPIAI 1187 Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNE 437 IL E+RG++ + D T + Sbjct: 1188 SILVKNPQAEKRGQIYFHDIGDYLTREQKL 1217 >gi|254304353|ref|ZP_04971711.1| site-specific DNA-methyltransferase (adenine-specific) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324545|gb|EDK89795.1| site-specific DNA-methyltransferase (adenine-specific) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 718 Score = 45.4 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 85/223 (38%), Gaps = 36/223 (16%) Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 ++ + V +E+++ F + + S+ ++ H+ L G+ ++ ++ Sbjct: 324 YKNNIKEVTEEYRSKLENNFKIPNEILKNTSLEWIFHIL--LINQLKEKGKGISLVKTNI 381 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424 L+ IR++ +EN IE+I+ LP ++ L + S K++ Sbjct: 382 LY----EPKNKNIRKYFVENGYIESIIYLPKNMLIDYPFPLALIVFSKE-----NKKIKF 432 Query: 425 INATDLWTSIR-----------------NEGKKRRIINDDQRRQILDIYVSRENGKFS-- 465 I+A + + + II D +I+D+ +++N K S Sbjct: 433 IDAYKFCKMEKFKIEFIDNYFKNPKISEIKEQNINIIIDTNVEKIIDLINNQKNIKESFS 492 Query: 466 -RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 ++ D Y + +F + L + + +I ++ + Sbjct: 493 KKIEDIVEKDYNLVVTE-----NFEILVDILKKFKNEIKFKDI 530 >gi|296269521|ref|YP_003652153.1| hypothetical protein Tbis_1545 [Thermobispora bispora DSM 43833] gi|296092308|gb|ADG88260.1| conserved hypothetical protein [Thermobispora bispora DSM 43833] Length = 1195 Score = 45.4 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 25/174 (14%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + H + R + ++Y+ L V + TP + L P F Sbjct: 175 HDFHSPELDTRFLGDLYQDL----SEHVRKRYALLQTPEFIGDFILDRTLTPAIDDFGLD 230 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI---------PPILVPHGQELEPETHA 253 L DP CG+G FL A + + + + HG ++ P A Sbjct: 231 ---GLKLIDPACGSGHFLLGAFDRLLQAWAAQAPGMDERVRVQKVLDSIHGVDINPTATA 287 Query: 254 VCVAGMLIRR--------LESDPRRDLSKNIQQGST-LSKDLFTGKRFHYCLSN 298 + +++ L+ L N+ G + L F G++ + + Sbjct: 288 ITKFRLMVAALQACGVTRLDDPGIPALRLNVATGDSLLYASKFGGRQTELQVQD 341 >gi|94985645|ref|YP_605009.1| putative type II DNA modification enzyme [Deinococcus geothermalis DSM 11300] gi|94555926|gb|ABF45840.1| putative type II DNA modification enzyme [Deinococcus geothermalis DSM 11300] Length = 1318 Score = 45.4 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 49/209 (23%) Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR------- 164 + D + I L E G L + NF+ ++ + +IYE L+ Sbjct: 366 LANSDLYAAIRALSLIEDGGTLKSV--NFTDLDAE-------ELGSIYESLLELHPEINT 416 Query: 165 --------RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-----TLYD 211 + + TP ++ L LDP P + + D Sbjct: 417 ATGTFTLSSAAGNERKTTGSYYTPTGLIELLLESSLDPVIEDALTKPDPVAALKALNVVD 476 Query: 212 PTCGTGGFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVC 255 P CG+G FL A + + + +G +L P + Sbjct: 477 PACGSGHFLLAAARRIGLALARAEHDVTQPSPEQLRAATREVIAHCIYGVDLNPMAIELA 536 Query: 256 VAGMLIRR-LESDPRRDLSKNIQQGSTLS 283 + + + P L ++ G++L Sbjct: 537 KVALWLESAVPGKPLAFLDHRLRSGNSLL 565 >gi|256847935|ref|ZP_05553379.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256714995|gb|EEU29972.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 305 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 78/248 (31%), Gaps = 40/248 (16%) Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 MTP + L L+ T+ DP GTG LT MN++A Sbjct: 68 MTPDTIGMLIAYLI------EQIVGLDQPSTILDPVVGTGNLLTTVMNYLAKVSK----- 116 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 + +G + + A ++ L + +S + ++ Sbjct: 117 QPVQGYGIDNDESMLAAASVSSELQGLPL--------QLIHQDAISN--LDVPQVDLAVA 166 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 + P G ++ KN S S + + + + + GG A Sbjct: 167 DLPIG------YYPLDDNAKN-------YQTKAASGHSYVHHLLIEHTMNYLVPGGF--A 211 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 + S LF +W+ ++ + LPTD+F + IL N + Sbjct: 212 FFVVPSDLF---KTKESENFVKWIHSVAFLQGFINLPTDMFRNAEAQKSILILQNHGSGA 268 Query: 418 RRGK-VQL 424 + K V L Sbjct: 269 YQAKQVLL 276 >gi|294785906|ref|ZP_06751194.1| helicase [Fusobacterium sp. 3_1_27] gi|294487620|gb|EFG34982.1| helicase [Fusobacterium sp. 3_1_27] Length = 2042 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 66/293 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + F TP+ V+ D E + +P+C G F+ + Sbjct: 524 EYNKAMESTLTAFYTPKVVI--------DNIYTKLIEFGFKEGRILEPSCAVGNFIGNLP 575 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL+ + + + ++ Q + Sbjct: 576 KEL----------DSSQVYGVELDSISGNIAK-------------QLYPQSEIQVKGFEE 612 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F+ F + N PFG + +++E+ + L + Sbjct: 613 TNFSNNFFDIAIGNVPFG-----NFKILDREYDR---------------YNFLIHDYFFA 652 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A + SS L +R++L E + V LP +F T Sbjct: 653 KTIDKVKSGGIIAFITSSGTLDKKDNS-----VRKYLGERCELLGAVRLPNSVFKGVAGT 707 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453 + + + L R K+Q ++ + G K + I+ Sbjct: 708 EVTSDILFLKK------RDKIQELDNETWYEIAEDKNGIKYNKYFVNNPEMII 754 >gi|257125725|ref|YP_003163839.1| helicase [Leptotrichia buccalis C-1013-b] gi|257049664|gb|ACV38848.1| helicase domain protein [Leptotrichia buccalis C-1013-b] Length = 2131 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 56/369 (15%), Positives = 109/369 (29%), Gaps = 68/369 (18%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 E + E + S ++ F T E L + NN I Sbjct: 509 EKETENIIENDEIIHPYADEENSKDNISKN-FKITEEIQSEKLLPSERLNNNIEAIKV-- 565 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR-FG 167 K + E L K + F + + + + E+L + + Sbjct: 566 --LKKLSERKATDDEKITLSKYVGWGGLADVFDENKG---GQWEEARNFLKENLTQEEYD 620 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + F TP+ V+ ++ + +P+CG G F+ + + + Sbjct: 621 NAKASTLTAFYTPKIVIDSIYK--------GIQQLGFEGGNILEPSCGVGNFIGNLPDEL 672 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 +G EL+ + + + NIQ K F Sbjct: 673 EKSK----------IYGVELDSVSGNIAK------------KLYPESNIQV-KGFEKTEF 709 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + F + N PFG D +++E++ + + + K Sbjct: 710 SNNSFDVVIGNVPFG-----DFKVMDREYEKL---------------NFMIHDYFIAKSL 749 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404 GG A + +G + +RR++ E + + LP D F T + Sbjct: 750 DKVKKGGIMAFIT-----SSGTFDKKDDSVRRYIGERAELLGAIRLPNDTFKGVAGTEVT 804 Query: 405 TYLWILSNR 413 + + L R Sbjct: 805 SDIIFLKKR 813 >gi|254880892|ref|ZP_05253602.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254833685|gb|EET13994.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 1128 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 49/214 (22%) Query: 128 EKAGLLYKICKN--FSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDF 177 ++ L+ I F+ E P+ ++ ++E+L+ + E E + F Sbjct: 376 DEKRGLFSILNKYNFTIEENTPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSF 435 Query: 178 MTPRDVVHLATA-----LLLDPDDALFKESPGMIR------------------TLYDPTC 214 TPR++V L + D +P + DP C Sbjct: 436 YTPREIVKYMVDESLIAYLGESDFNRSLFAPNFKYEVAHVEEYKSIAEKLKAVKVLDPAC 495 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRL 264 G+G F +N +A+ ++ + +G +++ + I + Sbjct: 496 GSGAFPMGLLNRMAEVLQRIELNTNVYEQKLAIIENCLYGSDIQSIAAQITKLRFFISLI 555 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 R N + +N Sbjct: 556 VDCERDASKPN------FGIPTLPNLETKFVAAN 583 >gi|255527088|ref|ZP_05393977.1| N-6 DNA methylase [Clostridium carboxidivorans P7] gi|296188152|ref|ZP_06856544.1| N-6 DNA Methylase [Clostridium carboxidivorans P7] gi|255509240|gb|EET85591.1| N-6 DNA methylase [Clostridium carboxidivorans P7] gi|296047278|gb|EFG86720.1| N-6 DNA Methylase [Clostridium carboxidivorans P7] Length = 542 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 99/340 (29%), Gaps = 68/340 (20%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 D + Y+ L+ + + F TP ++ Sbjct: 1 MYKDVKLEKSYDVLMEK---NRKKSYGCFYTPDYIIDYIIKNTF----DNLNVIKTPFVK 53 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH---------------------------------HK 235 + DP+CG+G FL + + + + Sbjct: 54 ILDPSCGSGYFLIKVIKFLVEEFTKNIDALSKKYEEEEYIINGDCKLKGKDYWKVENIIL 113 Query: 236 IPPILVPHGQELEPETHAVCVAG----------MLIRRLESDPRRDLSK---NIQQGSTL 282 +G +++ +C +++ + D K N + S Sbjct: 114 HIVNHCVYGADIDYNAVEICKQNIVSTCENKKGLILNVVCCDSLIKWEKAYINKTEKSNY 173 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 D F K++ Y + NPP+ K+K + E N + + + + FL Sbjct: 174 LCD-FWSKKYDYIVGNPPWVSLNRKNKQCKDIELINYYINEYEGNIYLPNLYEY-FLKRS 231 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRT 401 L++ GR VL R+ ++ N +I L ++ F Sbjct: 232 LQVLKMH----GRIGFVLPD----RLAKNLQYKNFRKKIILN---YSIKNLAFEITFPNI 280 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 N ++IL +++ ++ + +++ K Sbjct: 281 NTDVMIFILERSYSKDNEID-LYVHKKRNYRIYQSQYLKN 319 >gi|240142784|ref|YP_002967297.1| putative type II DNA modification enzyme [Methylobacterium extorquens AM1] gi|240012731|gb|ACS43956.1| putative type II DNA modification enzyme [Methylobacterium extorquens AM1] Length = 1329 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 46/216 (21%) Query: 127 LEKAGLL---YKICKNFSGIELHPDTVPD---RVMSNIYEHLIRR------------FGS 168 L LL Y++ + + P D + ++YE L+ F Sbjct: 395 LSNRDLLKAIYRLAWLKTDDGVMPVNWRDMQTEELGSVYESLLELTPRITADGREMLFAE 454 Query: 169 ------EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG------MIRTLYDPTCGT 216 + + TP +V + +DP + + DP CG+ Sbjct: 455 GLETRGNARKTTGSYYTPDSLVQVLLDTTIDPVMDQAVAGAADPVRALLGLRVIDPACGS 514 Query: 217 GGFLTDAMNH---------------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 G FL A + HG + P + + I Sbjct: 515 GHFLLAAARRLAARVARARNDGVASAEQYRDAVRDVVRQCIHGVDRNPMAVDLTKVALWI 574 Query: 262 RRLES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +E P L NI G L G++ L Sbjct: 575 ESIEPGKPLGFLDGNIVCGDALLGTFGYGEKLDAVL 610 >gi|282852175|ref|ZP_06261528.1| hypothetical protein HMPREF9209_0035 [Lactobacillus gasseri 224-1] gi|282556665|gb|EFB62274.1| hypothetical protein HMPREF9209_0035 [Lactobacillus gasseri 224-1] Length = 234 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 62/212 (29%), Gaps = 24/212 (11%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESF------VKVAGYSFYNTSEYSLSTLG 92 + ++ GG N LE+ + G + Sbjct: 27 LFIAKIVDEFNTPDDKALSFQNYMGGENEPLETLYTRIENLYSQGLRDFIKIYIDTDKDI 86 Query: 93 STNTRNNLESYIASFSDNAKAIF-------EDFDFSSTIAR---LEKAGLLYKICKNFSG 142 + + I S+ I DF F ++ +L ++ + Sbjct: 87 NKIKQILNIEGINDESELVHRIEHLLSKVNADFQFKDVYDNQTYIDNLNILKELVDLIAP 146 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +L + + +E ++ + + A F TP + H + L P S Sbjct: 147 YKLKYAKKQQF-LGDFFESIL---SNGFKQEAGQFFTPVPLAHFIVSSLPLPQRTKTIIS 202 Query: 203 PGMIR----TLYDPTCGTGGFLTDAMNHVADC 230 R + D CG+G F+T+ M+ + Sbjct: 203 DESSRQLLPRMIDFACGSGHFITEYMDEMQKI 234 >gi|83956080|ref|ZP_00964562.1| hypothetical protein NAS141_02766 [Sulfitobacter sp. NAS-14.1] gi|83839646|gb|EAP78825.1| hypothetical protein NAS141_02766 [Sulfitobacter sp. NAS-14.1] Length = 1179 Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 44/343 (12%), Positives = 102/343 (29%), Gaps = 60/343 (17%) Query: 22 LWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79 L G F D V LP + C E + + +D+E G Sbjct: 352 LLGQFDQNDEPDV-LP------VSDKCIHEVLKQLLMLGGERLSYKTLDVEQI----GSV 400 Query: 80 FYNTSEYSLSTLGSTNTR-----NNLESYIA-------SFSDNAKAIFEDFDFSS---TI 124 + ++++ ++ + +YI + K + + DF + Sbjct: 401 YETVMGFTVTRSKGSSIALRSGKGGIPAYIDLEAVLGKAPDKRTKYLLDTIDFKTTPAQS 460 Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 L+ A + ++ + PD+ ++ +++ ++ TPR + Sbjct: 461 KLLKPAKTIDELLTALDKK-IDERGSPDKRVTTAGTIILQP--TDERRKTGSHYTPRSLT 517 Query: 185 HLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVADCGSHH------ 234 L+P A E+P + + DP G+G FL + + + Sbjct: 518 APIVKEALEPVLAQLGENPTPDQVLDLKVCDPAMGSGAFLVETCRALGEQLEAAWARHPH 577 Query: 235 ---------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQ 278 + +G + + + + L D + ++ Sbjct: 578 LLPDEARTDPQVFARREVAKRCLYGVDKNHMATDLAKLALWLVTLAKDEDFSFLDHALKT 637 Query: 279 GST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 G + L+ D + + P F + + + D + + Sbjct: 638 GDSLVGLNFDQLAEFDWQTDGTYPGFTQSFRRKVDEARGDRQR 680 >gi|160888203|ref|ZP_02069206.1| hypothetical protein BACUNI_00611 [Bacteroides uniformis ATCC 8492] gi|156862338|gb|EDO55769.1| hypothetical protein BACUNI_00611 [Bacteroides uniformis ATCC 8492] Length = 1980 Score = 45.4 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 88/281 (31%), Gaps = 47/281 (16%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R F S + F TP+D+V + + DP+ GTG F+ Sbjct: 92 RYFSSLKNSVLTAFYTPQDIVSVLAS--------ELGNYGIAPSRFLDPSSGTGVFVDAF 143 Query: 224 MNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGM----LIRRLESDPRRD 271 H A H E +P + AG+ ++ + Sbjct: 144 QQHSAQQQLSEQQSAKQQSSEQQSSEQHSSEQQPSRTGLSPAGLSRPEIVCFEKDLLTGK 203 Query: 272 LSKNIQQGSTLSKDLFTG------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 + ++ + + F RF SN PFG D K+ L R Sbjct: 204 ILSHLHPEAKVEITGFEDSGLRYLNRFDITASNIPFGDVAVFDPSFT----KSKSLVRQH 259 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 S + FL K GG A + S L + IR L+++ Sbjct: 260 AA---KSLHNYFFL-----KGLDNIREGGILAFITSQGVLDSPANE----NIRYQLMQHS 307 Query: 386 LIEAIVALPTDLFF---RTNIATYLWILSNR--KTEERRGK 421 + + + LP +LF T + + L IL + KTE Sbjct: 308 HLVSAIRLPNNLFTDGAGTEVGSDLIILQKKSDKTEPLTDD 348 >gi|117621762|ref|YP_854353.1| hypothetical protein BAPKO_3518 [Borrelia afzelii PKo] gi|110891148|gb|ABH02310.1| hypothetical protein BAPKO_3518 [Borrelia afzelii PKo] Length = 1070 Score = 45.4 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 86/288 (29%), Gaps = 40/288 (13%) Query: 98 NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV------- 150 NN++ +I S + I + + I + L I + + D Sbjct: 262 NNIKEFIPSNFSLIRDIL---NLINDIGVNREYNSLKWILEEIINVVNSIDAELIFNEFS 318 Query: 151 -------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 YE + ++ + + + + TP VV+ + L FK Sbjct: 319 FTRTTLISKDPYLYFYEDFLAKYDANLRKAKGVYYTPSPVVNFIVSSLQKVLKKEFKLEL 378 Query: 204 GM----IRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPET 251 G T+ D GTG FL + + + D + + +G E Sbjct: 379 GFATRDQVTVLDFATGTGTFLLEVIKAILDKITEKSGKRPEYIDNHILKNIYGFEYLMAP 438 Query: 252 HAVCVAGM---LIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307 +AV + L D + ++ + +TL ++ P + + Sbjct: 439 YAVAHLKLSQYLKEVCNVDFDNERTRLQVFLTNTLDITKIPDQKG--LAGFFPAISEENE 496 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + V+ + LG ++ + N ++ G+ Sbjct: 497 LTNEVKHKEILVILGNPPYSTGSKNNNEY-----ILNLMKKYKEIEGK 539 >gi|313667255|ref|YP_004049656.1| protein of unknown function DUF450 [Oceanithermus profundus DSM 14977] gi|313153886|gb|ADR37736.1| protein of unknown function DUF450 [Oceanithermus profundus DSM 14977] Length = 1102 Score = 45.4 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 45/206 (21%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP----GMIRTLYDP 212 YE + + ++ + + TP +VV L D P + DP Sbjct: 305 YFYEDFLAAYDPKMRKDYGVYYTPVEVVGAMVRL--THDALRRMGKPAGLADEGVLVLDP 362 Query: 213 TCGTGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAV---CVAGMLIRRLE 265 GTG F A+ +P Q L + VA + ++R Sbjct: 363 AAGTGTFPLATFDLALEEARSRFGEGIVPAKAAELAQRLFAFEILIGPYAVAHLRLQRAY 422 Query: 266 SDPRRDLSKNIQQGSTLSKDLF------------------------TGKRFHYCLSNPPF 301 + + + TL + NPP+ Sbjct: 423 LEEGAEGKPQVYLTDTLEAPELRPLAHLGVLEKPLVKEHEEAMAVKRDAPVLVVIGNPPY 482 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPG 327 + D G RFG G Sbjct: 483 DRHSADDPK--------GGWVRFGFG 500 >gi|299144396|ref|ZP_07037476.1| type I restriction-modification system, M subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518881|gb|EFI42620.1| type I restriction-modification system, M subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 56 Score = 45.4 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 19/47 (40%) Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 + ++ YE+ I +F + +F TP +V A+L Sbjct: 1 MDETEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVRTIVAIL 47 >gi|331649967|ref|ZP_08351043.1| conserved hypothetical protein [Escherichia coli M605] gi|331041224|gb|EGI13378.1| conserved hypothetical protein [Escherichia coli M605] Length = 2255 Score = 45.4 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 61/384 (15%), Positives = 119/384 (30%), Gaps = 74/384 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 89 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ L ++ ++ E + + Sbjct: 273 RKHPAEMAEKIPLVDEGTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319 Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 G++ RI+V ++ K + R E+ I W L+ S D++ ++ Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLNMAEPSPTADVVDEGEMRLING 379 Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553 W + I+++ K LK+ A+ Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403 >gi|119358135|ref|YP_912779.1| hypothetical protein Cpha266_2367 [Chlorobium phaeobacteroides DSM 266] gi|119355484|gb|ABL66355.1| hypothetical protein Cpha266_2367 [Chlorobium phaeobacteroides DSM 266] Length = 203 Score = 45.4 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 14/181 (7%) Query: 390 IVALPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447 IV+LP +F + T S ++ K+ + + + GKK + Sbjct: 9 IVSLPGGVFTAAGAGVKTNHLFFSKGQSTR---KIWYYDLSSI-----KVGKK-TPLTIK 59 Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507 + + R + + S ++ + + P + +A+L + K Sbjct: 60 TFEEFFRLLPERPDSELSWTINMDERKQKAAEEACPFKEKATATSQKVAQLSERLKELKK 119 Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567 + +S ++ + M+ + + K + +KA A + + Sbjct: 120 TFARKSKVIEEAEKMIADLTREARTNA---AKAKEIQDAVYDLKAVNPNKKADTDNHTPE 176 Query: 568 D 568 D Sbjct: 177 D 177 >gi|325853297|ref|ZP_08171337.1| hypothetical protein HMPREF9303_1178 [Prevotella denticola CRIS 18C-A] gi|325484359|gb|EGC87285.1| hypothetical protein HMPREF9303_1178 [Prevotella denticola CRIS 18C-A] Length = 1229 Score = 45.4 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 54/369 (14%), Positives = 115/369 (31%), Gaps = 55/369 (14%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------NHVADCGSHHKIPPILVPHG 244 ++ F IR DP+ G G F + + +I + P+G Sbjct: 111 IVAAIADTFSSVDVPIRRCLDPSAGMGAFTEIFATKAGTVDAMEKDLLTARISQAIHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 Q +++R+ + +L ++ SN PFG Sbjct: 171 QG-----------NIIVRQAPFEAIGELE--------------EKDKYDLITSNIPFG-- 203 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D ++E+ G+ I + + K GG A + S Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 L + + IRR+L++N + + + LP+ +F T + + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSQLISALRLPSGMFSENAGTEVGSDLIVLQKQSGKEIGES 309 Query: 422 V--QLINA-TDLWTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476 + Q + + + + K + D + + I I R G+ + + Sbjct: 310 IEQQFVASVSAPIAEGSSVVFKHNSLFDGEWKDIAHRTIATERTMGRDPYGKPAWEYHFD 369 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + L R + + + + + +K + + E Sbjct: 370 GSIEDLAESIRTQLSLEIEQRFDRKLYETGIPMTEEERQKEAVKQLRKLGVTVDLPEEEP 429 Query: 537 KESIKSNEA 545 K +++ A Sbjct: 430 KTDKEADNA 438 >gi|289764892|ref|ZP_06524270.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11] gi|289716447|gb|EFD80459.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11] Length = 1914 Score = 45.4 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 75/278 (26%), Gaps = 66/278 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F TP+ V+ L G + +P+ G G F+ + Sbjct: 441 EEYTKARESTLTAFFTPKVVIDNIYKGL-----DNLGFKEGK---ILEPSSGIGNFIGNI 492 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + EL+ + + A NI Q Sbjct: 493 PEKME----------NSKFYSVELDSLSGRIEKA------------LYPQANI-QIDGFE 529 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F + N PFG ++ + ++ + + Sbjct: 530 NTDFRNNFFDVAVGNVPFG-DFKVNDKEYDRNNFLIHD-------------------YFF 569 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A + NG + IRR++ E + V LP + F Sbjct: 570 AKSIDKVRPGGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 624 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 T + + + L R+ + D + + + Sbjct: 625 TEVTSDIIFLKKREER-------FVGEEDWYKTSTDSK 655 >gi|218691176|ref|YP_002399388.1| hypothetical protein ECED1_3528 [Escherichia coli ED1a] gi|218428740|emb|CAR09680.2| conserved hypothetical protein [Escherichia coli ED1a] Length = 265 Score = 45.4 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 9/142 (6%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +++ L + F TP V + + L ALF+ P + TL +P Sbjct: 122 DFLGSVFMQL-----ELGDKYRSQFFTPWGVACMMAQMQLGNVKALFENKPFI--TLSEP 174 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 CG G + + + G + +++P + + + + + Sbjct: 175 ACGAGSMILAMADTLNRSGY--PAYRRMWVSETDIDPLAAGMAYIQLSLCGVAGEVVIGN 232 Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294 S ++ L + Y Sbjct: 233 SLCNERRRILLTPGHYLGNWSY 254 >gi|323186569|gb|EFZ71913.1| helicase conserved C-terminal domain protein [Escherichia coli 1357] Length = 2221 Score = 45.4 bits (106), Expect = 0.034, Method: Composition-based stats. Identities = 61/384 (15%), Positives = 119/384 (30%), Gaps = 74/384 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 55 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 93 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 94 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 142 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 143 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 183 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 184 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 238 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ + L ++ ++ E + + Sbjct: 239 RKHPAEMAEKIPLVDESTLESA--------NVLWSTFISG-----KWFEKDGRRFVHGTQ 285 Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 G++ RI+V ++ K + R E+ I W L S D++ ++ Sbjct: 286 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMRLING 345 Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553 W + I+++ K LK+ A+ Sbjct: 346 VWQKYAGGRWIEADAGKELKIDAA 369 >gi|120609278|ref|YP_968956.1| type III restriction enzyme, res subunit [Acidovorax citrulli AAC00-1] gi|120587742|gb|ABM31182.1| type III restriction enzyme, res subunit [Acidovorax citrulli AAC00-1] Length = 1609 Score = 45.4 bits (106), Expect = 0.034, Method: Composition-based stats. Identities = 46/363 (12%), Positives = 79/363 (21%), Gaps = 57/363 (15%) Query: 40 LLRRLECALEPT--RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 L+ L+ L PT R E + ++ + N +L + Sbjct: 750 FLKGLQDTLNPTVGRDEAVEMLAQHILTLPVFQALFADTDFPTRNVVGRALQDIVDKLDA 809 Query: 98 NNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 + + F DN + K ++ + F Sbjct: 810 AAVGSETEGLQKFYDNVRERVALAKSDK-----SKQDIIRNLYDTFFNNAFP-------- 856 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPT 213 R TP VV F +S G + DP Sbjct: 857 ----------RMAE----RLGIVYTPVQVVDFILHSANSALRKHFGQSLGNEGVHILDPF 902 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 GTG F + S H E+ + + + Sbjct: 903 SGTGTFPVRLIQSGLINRSDLPRKFASELHANEIVLLAYYIATINIETAYHGVMGEYLPF 962 Query: 274 KNIQQGSTLSKDLFTG-------------------KRFHYCLSNPPFGKKWEKDKDAVEK 314 + T + + NPP+ + E + D + Sbjct: 963 DGMVLTDTFQMTEDNDLVDKVVLPENNARVERQLAEPIRVIVGNPPYSAQQESENDNNKN 1022 Query: 315 EHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGG--GRAAIVLSSSPLFNGR 369 R S + L+ ++ G G A V + S L Sbjct: 1023 LAYPTLDDRIRQTYAAQSSAKLVKNLYDSYIRAIRWASNRIGERGIVAFVTNGSFLDANN 1082 Query: 370 AGS 372 Sbjct: 1083 MDG 1085 >gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes DSM 20306] gi|295968218|gb|EFG81467.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes DSM 20306] Length = 1656 Score = 45.4 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 78/291 (26%), Gaps = 44/291 (15%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + E+ + + LEK Y+ E+ + +V+ +YE ++ + +E Sbjct: 819 DVLEEANLDTETDSLEK---FYESV-RVRASEVSSASGKQQVIKELYERFFQKAFKKQAE 874 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVAD 229 TP ++V L D + G+ + DP GT F+ + Sbjct: 875 SLGIVYTPVEIVDFI--LRAADDVSKIHFGKGLTDEGVCILDPFAGTSTFMVRLLQSGLI 932 Query: 230 CGSHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 E+ T+ A R+ E++P I Sbjct: 933 KPEDLARKYANELFATEIMLLAYYVSAVNIETTYNALRAEEAFRKGETEPEYVPFDGIAL 992 Query: 279 GSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNG 319 T D+ + F + + NPP+ D Sbjct: 993 ADTFQIHEEGDILDLEVFKNNNQRIERQKTAPINVVIGNPPYSAGQHSANDNNANLKYPT 1052 Query: 320 ELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPL 365 R S + + L+ + G A V + L Sbjct: 1053 LDKRIAETYAAKSTATNKNSLYDSYLRAFRWATDRIGSQGIVAFVSNGGWL 1103 >gi|256026903|ref|ZP_05440737.1| helicase [Fusobacterium sp. D11] Length = 1923 Score = 45.4 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 75/278 (26%), Gaps = 66/278 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F TP+ V+ L G + +P+ G G F+ + Sbjct: 450 EEYTKARESTLTAFFTPKVVIDNIYKGL-----DNLGFKEGK---ILEPSSGIGNFIGNI 501 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + EL+ + + A NI Q Sbjct: 502 PEKME----------NSKFYSVELDSLSGRIEKA------------LYPQANI-QIDGFE 538 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F + N PFG DK+ + F Sbjct: 539 NTDFRNNFFDVAVGNVPFGDFKVNDKEYDRNNFLIHDY----------------FFAKSI 582 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +K+ GG A + NG + IRR++ E + V LP + F Sbjct: 583 DKVRP----GGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 633 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438 T + + + L R+ + D + + + Sbjct: 634 TEVTSDIIFLKKREER-------FVGEEDWYKTSTDSK 664 >gi|294101455|ref|YP_003553313.1| restriction modification system DNA specificity domain protein [Aminobacterium colombiense DSM 12261] gi|293616435|gb|ADE56589.1| restriction modification system DNA specificity domain protein [Aminobacterium colombiense DSM 12261] Length = 505 Score = 45.4 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 104/304 (34%), Gaps = 62/304 (20%) Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL----IRRFG 167 K + E+FD ++ I R +L+++ K + L I+E L + F Sbjct: 9 KKLKENFDKTANIQR--DREVLFQLMKKTTEDHLGFFPTDRDDFLEIFEALKDIDLVDFT 66 Query: 168 SE--VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 E ++ ++P+ + + + + P + +T+A Sbjct: 67 IEIYKNDRMGTVISPQYLTEYISERI-------QRLCPQKV------------LITEAEK 107 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 H++ G K P + T + +L++ I+ ++ Sbjct: 108 HLSGLGDLIKRFPNIKIT------LTTHLKPMHILLQ---LAFGEYEHVKIRFE-SIYMP 157 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 +++ Y S P F + E L + SDG + ++ N Sbjct: 158 CLENEKYDYVYSLPIFSNRPEGTSQTF---------------LTRDSDG--IAFENMLNH 200 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404 L + I++ + F A G ++R ++ EN +E + LP F T I Sbjct: 201 L----DENSTLDIIVPAKITF---ASLGYEKLRSYITENFYVENMYLLPEGTFRPATAIK 253 Query: 405 TYLW 408 TYL+ Sbjct: 254 TYLF 257 >gi|223932999|ref|ZP_03624993.1| SNF2-related protein [Streptococcus suis 89/1591] gi|223898316|gb|EEF64683.1| SNF2-related protein [Streptococcus suis 89/1591] Length = 1967 Score = 45.4 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 51/377 (13%), Positives = 101/377 (26%), Gaps = 72/377 (19%) Query: 45 ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104 + + E+ +E+ ++ FY L+ R+ +E+ I Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610 Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163 + + ++ + A + LL K + G+ + S E L Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664 Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + + T ++ + + DP+ GTG F Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPTLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + +G EL+ T A+ + I+ Sbjct: 717 FAAMPKQLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 T+ F F +SN PF + R+ D + Sbjct: 758 ETV---EFNDDSFDLVISNVPFA-------------NLRIADNRY--------DKPYMIH 793 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + K + GG+ AI+ G I + + + V LP F Sbjct: 794 DYFLKKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRDTTEFLGGVRLPDSAFK 848 Query: 399 --FRTNIATYLWILSNR 413 T++ T + Sbjct: 849 AIAGTSVTTDMLFFQKH 865 >gi|319641273|ref|ZP_07995972.1| DNA methylase [Bacteroides sp. 3_1_40A] gi|317387146|gb|EFV68026.1| DNA methylase [Bacteroides sp. 3_1_40A] Length = 1661 Score = 45.4 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 66/369 (17%), Positives = 112/369 (30%), Gaps = 74/369 (20%) Query: 104 IASFSDNAKAIFEDFDFSST--IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 + S S N KAI S A E+ +L + F GI+ D D+ + Sbjct: 6 LTSLSANIKAIETAVAIHSQGRTATQEEKQVLAQY-SGFGGIKDVLDLGTDKPLDKEVAG 64 Query: 162 LIRRFGSEVSEGAE-------------------DFMTPRDVVHLATALLLDPDDALFKES 202 L+ R + A F TP + F + Sbjct: 65 LLNRLLDALRTLAGGDEAACRSLVESIKSSVLTAFYTP----QFLIDAVAAQIHKTFSAN 120 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 +++ +P+ G GGFL AM I Sbjct: 121 GLQMQSFLEPSVGIGGFLPVAMPGTRSYAFEKDT------------------------IT 156 Query: 263 RLESDPRRDLSKNIQQG-STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 L + + + G T+ ++F SN PFG + K G Sbjct: 157 GLVLSLLHEDATTVTAGFETIGTQELEHRKFDVIASNIPFG----NFRVFDADLWKKG-- 210 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 G + I + F+ + + GG A V S +G +R +L Sbjct: 211 GIYEQATKTIHN--YFFVKAM-----ELLSEGGLLAFVTSRGVADT----AGNKFVREYL 259 Query: 382 LENDLIEAIVALPTDLFFRTN---IATYLWILSN--RKTE-ERRGKVQLINATDLWTSIR 435 + + + + V LP LF +T+ + + L I KT R ++ L A +++ Sbjct: 260 VNHADLISAVRLPDALFMQTSGIEVGSDLLIFQKHTNKTALSAREQMFLQVAKEMYDMNG 319 Query: 436 NEGKKRRII 444 + + Sbjct: 320 TMTENANRL 328 >gi|78189274|ref|YP_379612.1| methylase [Chlorobium chlorochromatii CaD3] gi|78171473|gb|ABB28569.1| methylase [Chlorobium chlorochromatii CaD3] Length = 933 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 58/215 (26%), Gaps = 43/215 (20%) Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSH--------------------------HKIPPIL 240 +DP CG G FL + + Sbjct: 353 MRFFDPACGCGNFLVITYREIRQLEIEVLQQYFMLTSKMYKAGVTQLETDIETISKIDVN 412 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPR-------------RDLSKNIQQGSTLSKDLF 287 +G E+E + + + + + R + NI + L KD Sbjct: 413 QFYGIEIEEFPARIAQVALWLTDHQMNMRLSQAFGQTYVRLPLQHAPNIICDNALRKDWE 472 Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 K Y L NPPF K ++ + + GLP + L ++ Sbjct: 473 TVIPSKEHLYILGNPPFIGKQNRNAGQM-ADMDVICQPLKAKGLPNYGVLDYVALWYIKA 531 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 L + + + +S A E +R+ Sbjct: 532 ALFIENSNVKVTFVSTNSITQGEQVAALWEFLLRK 566 >gi|237745126|ref|ZP_04575607.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229432355|gb|EEO42567.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 2042 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 111/378 (29%), Gaps = 90/378 (23%) Query: 110 NAKAIFE--DFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165 N I E +F+ + I +L + L + ++L + + ++ + Sbjct: 433 NILTIIEEKNFNITDEIVPEKLTPSERLNNNIEAIKTLKLLEKENRNAT--YEEQIILSK 490 Query: 166 FG-----------------SEVSEGAEDFMTPRDVVHLATALL---------LDPDDALF 199 + E + ++ +T + ++L +D Sbjct: 491 YVGWGGLADTFDESKSGQWEEARKFLKENLTTDEYNKAMESILTAFYTPKVVIDNIYTKL 550 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 E + +P+C G F+ + + +G EL+ + + Sbjct: 551 IEFGFKEGRILEPSCAVGNFIGNLPKEL----------ASSQVYGIELDSISGNIAK--- 597 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + ++ Q + F+ F + N PFG + +++E+ Sbjct: 598 ----------QLYPQSEIQVKGFEETNFSNNFFDIAIGNVPFG-----NFKILDREYDR- 641 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + L + K GG A + SS L IR+ Sbjct: 642 --------------YNFLIHDYFFAKTIDKVKSGGIIAFITSSGTLDKKDNS-----IRK 682 Query: 380 WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IR 435 +L E + V LP +F T + + + L R K+Q +N + Sbjct: 683 YLGERCELLGAVRLPNSVFKGVAGTEVTSDILFLRK------RDKIQELNNEIWYEIAED 736 Query: 436 NEGKKRRIINDDQRRQIL 453 G K D I+ Sbjct: 737 KNGLKYNKYFVDNPEMII 754 >gi|301161275|emb|CBW20813.1| putative DNA methylase [Bacteroides fragilis 638R] Length = 1828 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 82/253 (32%), Gaps = 48/253 (18%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 S + F TP VV A +E+ + + + DP+ G G F + Sbjct: 93 SYMQSLKNSVMTAFYTPAPVVR--------EIAASLREAGIVPKRILDPSAGMGEF-IRS 143 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +A G + GQ L + IR E + Sbjct: 144 FDTIAAEGHTTFGFEKDILTGQMLSALH---PKDKIRIRGFEEIETKLNGS--------- 191 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F SN PFG D K E R + ++S + F+ Sbjct: 192 --------FDVVSSNIPFGDVAVFDPVFS----KTAESAR---KVARMSLHNYFFV---- 232 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A + S + A S E IR WL+ N + + V LP +LF Sbjct: 233 -KGVDMLREGGVLAFITSQGVM---NAPSNE-PIREWLMNNSRLVSAVRLPNNLFSENAG 287 Query: 401 TNIATYLWILSNR 413 T + + L +L + Sbjct: 288 TEVGSDLIVLQKQ 300 >gi|262408016|ref|ZP_06084564.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262354824|gb|EEZ03916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1285 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 83/311 (26%), Gaps = 62/311 (19%) Query: 68 DLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIA 125 + E A F N + L + + FS NA K+ +F + + + Sbjct: 308 EEEILTLFAHVPFLNGGLFECLDKPKDLYLNQEYDIFYDGFSRNATKSSNGNFKYRAFVP 367 Query: 126 RL------EKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SE 169 + E L + K NF+ E P ++ ++E+L+ + Sbjct: 368 NILFFNDDEDQPGLINLLKQYNFTIEENSPTDAVISLDPELLGRVFENLLAAYNPETQES 427 Query: 170 VSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP--------------------- 203 + F TPR +V LL E Sbjct: 428 ARKSTGSFYTPRPIVDYMVDEAIKSYLLGKRLDRISEEKLNALFKERTVSTDWTDSNKDA 487 Query: 204 ----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELE 248 + DP CG+G F + + D K + +G +++ Sbjct: 488 IANALKQVKILDPACGSGAFPMGCLLRIVDIIELLKGDTVDRYQLKLTIIENCVYGVDIQ 547 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 P +C I + D S + + + +N Sbjct: 548 PIAMLICKLRFFISLICEQNDIDFSS---PETNFGINTLPNLETKFVAANTLISANIRNY 604 Query: 309 KDAVEKEHKNG 319 +D + K Sbjct: 605 EDDWTNDEKLD 615 >gi|255016180|ref|ZP_05288306.1| type IIS restriction endonuclease, putative [Bacteroides sp. 2_1_7] Length = 1285 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 83/311 (26%), Gaps = 62/311 (19%) Query: 68 DLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIA 125 + E A F N + L + + FS NA K+ +F + + + Sbjct: 308 EEEILTLFAHVPFLNGGLFECLDKPKDLYLNQEYDIFYDGFSRNATKSSNGNFKYRAFVP 367 Query: 126 RL------EKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SE 169 + E L + K NF+ E P ++ ++E+L+ + Sbjct: 368 NILFFNDDEDQPGLINLLKQYNFTIEENSPTDAVISLDPELLGRVFENLLAAYNPETQES 427 Query: 170 VSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP--------------------- 203 + F TPR +V LL E Sbjct: 428 ARKSTGSFYTPRPIVDYMVDEAIKSYLLGKRLDRISEEKLNALFKERTVSTDWTDSNKDA 487 Query: 204 ----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELE 248 + DP CG+G F + + D K + +G +++ Sbjct: 488 IANALKQVKILDPACGSGAFPMGCLLRIVDIIELLKGDTVDRYQLKLTIIENCVYGVDIQ 547 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 P +C I + D S + + + +N Sbjct: 548 PIAMLICKLRFFISLICEQNDIDFSS---PETNFGINTLPNLETKFVAANTLISANIRNY 604 Query: 309 KDAVEKEHKNG 319 +D + K Sbjct: 605 EDDWTNDEKLD 615 >gi|171914144|ref|ZP_02929614.1| hypothetical protein VspiD_23235 [Verrucomicrobium spinosum DSM 4136] Length = 1252 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 27/147 (18%) Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK---AIFEDFDFS--- 121 E+ A F N + L + + Y+ FS N K + + F Sbjct: 330 QDEALALFADIPFLNGGLF--ECLDQSEEGTGKKRYLDGFSRNPKMRPHVPDRLFFDSGE 387 Query: 122 ---------STIARLEKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRF 166 + EK L I F+ +E P ++ ++E+L+ + Sbjct: 388 TADLAEVYGDKKRKAEKVTGLISILNRYKFTIVENTPIDQEIALDPELLGKVFENLLASY 447 Query: 167 GSEVS----EGAEDFMTPRDVVHLATA 189 E + F TPR +V Sbjct: 448 NEETKTTARKQTGSFYTPRPIVEYMVD 474 >gi|15611680|ref|NP_223331.1| hypothetical protein jhp0613 [Helicobacter pylori J99] gi|4155166|gb|AAD06194.1| putative [Helicobacter pylori J99] Length = 1167 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 86/327 (26%), Gaps = 43/327 (13%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 + ++ + N +N + + + L+ LY+ K Sbjct: 339 HIITKPIFDAIFGDNIKNPIAKALDKMVLKLSDL----GLEGETKDLKN---LYESVKTE 391 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALF 199 + + + + N+Y + + SE TP +VV Sbjct: 392 AARAKSQKSQQEL-IKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFN 450 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVA 257 + T++DP GTG F+ ++ D S K ++ ++ + + Sbjct: 451 TDFNDQSITIFDPFMGTGSFIARLLSKENDFISDEALKEKFQKGLFAFDIVLLSYYIALI 510 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTL-----SKDL----------------------FTGK 290 + D KNI +L D + Sbjct: 511 NITQAAQNRDSSLKNFKNIALTDSLDYLEEKNDKGVIPGFEYLFEDLKENKEIKTTMEKQ 570 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-----LFLMHLANK 345 + NPP+ + + D + R K S L+H Sbjct: 571 NIRVIIGNPPYSSGAKSENDNNQNLSHPKLEKRVYETYGKNSTAQNKNSTRDTLIHSIRM 630 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGS 372 G V++ S + + A Sbjct: 631 ASDLLKDKGVLGFVVNGSFIDSKSADG 657 >gi|316985075|gb|EFV64028.1| type I restriction enzyme, modification chain [Neisseria meningitidis H44/76] Length = 69 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 4/29 (13%), Positives = 10/29 (34%) Query: 5 TGSAASLANFIWKNAEDLWGDFKHTDFGK 33 L +W ++L G + + + Sbjct: 29 QSKKNQLYASLWAGCDELRGGMDASLYKE 57 >gi|253755095|ref|YP_003028235.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407] gi|251817559|emb|CAZ55306.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407] Length = 2281 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 68/276 (24%), Gaps = 59/276 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T ++ + + DP+ GTG F Sbjct: 676 KEYSDMKQSSLTAYYTDPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAM 727 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 H+ + +G EL+ T A+ I+ T+ Sbjct: 728 PKHLREKSE---------LYGVELDTITGAIAK----------HLHPTSHIEIKGFETV- 767 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F +SN PF + R+ + + + Sbjct: 768 --AFNDNSFDLVISNVPFA-------------NIRIADNRY--------NKPYMIHDYFV 804 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K + GG+ AI+ G I + + E V LP F Sbjct: 805 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAG 859 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 T++ T + + + + Sbjct: 860 TSVTTDMLFFQKHLDKGYVTDDLAFLGSVRYDKDSR 895 >gi|325495636|gb|EGC93500.1| DarB [Escherichia fergusonii ECD227] Length = 2221 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 59/384 (15%), Positives = 118/384 (30%), Gaps = 74/384 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 55 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 93 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 94 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 142 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 143 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 183 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 184 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 238 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ + L ++ ++ E + + Sbjct: 239 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 285 Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529 G++ RI+V ++ K + R E+ I W L+ S D++ ++ Sbjct: 286 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLNMAEPSPTADVVDEGEMRLING 345 Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553 W + I+++ K L + + Sbjct: 346 VWQKYAGGRWIEADAGKELNIDVA 369 >gi|256841200|ref|ZP_05546707.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737043|gb|EEU50370.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1235 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 85/297 (28%), Gaps = 76/297 (25%) Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLEC-------------ALEPTRSAVRE-KYLAFGGS 65 ++L+G + + + + IL L C + RS + K + + Sbjct: 250 DNLFGKSEASVYYRAILQNLFFAMLNCPITKEGGTEFTERRFKDNRSQFDDNKLMRYRDE 309 Query: 66 NIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-------- 115 D + F+++A F N + L T + + A+ I Sbjct: 310 FNDPDEFLRLANETVPFLNGGLFDC--LDEKRTGMYYDGFSERKESMAQLIVPDYLFFGE 367 Query: 116 ---EDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRV------MSNIYEHL 162 ++ D S K + + I K ++ V + ++E+L Sbjct: 368 EAGKNIDLSEFYGDANKKKVSARGIIDILKRYNFTVEENMPFDKDVSLDPELLGKVFENL 427 Query: 163 IRRFGSE----VSEGAEDFMTPRDVVHLAT-----------------------------A 189 + + E + F TPR++V Sbjct: 428 LASYNPETQQTARKQTGSFYTPREIVQYMVDESLVTHLKRTVGNELESEYRKLLDYADNE 487 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILVP 242 +LL L + DP CG+G G L ++ + + ++ Sbjct: 488 ILLTEQQKLAIMQSLYNCKILDPACGSGAFPVGVLQQMVHILKQIDPDNSRWKNMLL 544 >gi|163790375|ref|ZP_02184807.1| type I restriction-modification system methyltransferase subunit (putative) [Carnobacterium sp. AT7] gi|159874446|gb|EDP68518.1| type I restriction-modification system methyltransferase subunit (putative) [Carnobacterium sp. AT7] Length = 335 Score = 45.0 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 46/337 (13%), Positives = 99/337 (29%), Gaps = 44/337 (13%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 SY+ + S+ + I + I ++ K+ + + E+ D + + + Sbjct: 27 SYLEALSETGENILVN-KIPHQIDGFPSDEIVGKLTQLY--KEVSIDNMESEDIRKAIQL 83 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + + MTP + + L+ L DP G G L+ Sbjct: 84 ALLKASKTDALQPNHQMTPDAIGFILNYLI-----EKLISGKLEKIRLLDPAVGMGNLLS 138 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280 N + + E + +L+ K + Sbjct: 139 TVYN---------------GLVSKNILVEAEGIDNDDLLLTLASVSTTMQRQKVTLTHQD 183 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 L +S+ P G +K + K S LF+ Sbjct: 184 ALQD--LLMDPVDVVVSDLPVGYYPLDEKVSKYKTAAKEGH----------SYAHHLFIE 231 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + L+ G I L + LF G ++ + E ++ ++ LP +LF Sbjct: 232 QSLHYLKD-----GGFGIFLVPAQLFETDETPGLMKM---IQEESFLQGMLNLPNELFKT 283 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 N + ++ + ++ K L+ + + + Sbjct: 284 KNSRKSILLIQKKGNNAKQAKQVLLAQIPDFKNQKAM 320 >gi|308174631|ref|YP_003921336.1| nucleic acid methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307607495|emb|CBI43866.1| putative nucleic acid methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328554557|gb|AEB25049.1| nucleic acid methyltransferase [Bacillus amyloliquefaciens TA208] gi|328912961|gb|AEB64557.1| putative nucleic acid methyltransferase [Bacillus amyloliquefaciens LL3] Length = 328 Score = 45.0 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 36/213 (16%) Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 TL DP CGTG L A N ++D + G +++ + A Sbjct: 113 TGSQKGLTLLDPACGTGNLLLTAANQLSDKAAKS--------FGIDIDDVLLKIAYAQAN 164 Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 ++ E + +L ++ + + P G + D+ A E K E Sbjct: 165 LQEKEMELFCQ--------DSLQP--LFIEQADAVICDLPVGY-YPNDEGAEAFELKADE 213 Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 F LF+ + GG ++ + LF+ +++++ Sbjct: 214 GHSFAHH---------LFIEQSVKHTKP----GGYLFFMIPNH-LFDSAQS---DKLKQF 256 Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 L E I A++ LP LF A + IL + Sbjct: 257 LAEKVYINALLQLPATLFKDEAQAKSILILQKK 289 >gi|315639417|ref|ZP_07894576.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] gi|315480480|gb|EFU71125.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] Length = 2533 Score = 45.0 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 63/372 (16%), Positives = 112/372 (30%), Gaps = 74/372 (19%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 T A+ E + F ++ F + F L L N + ++ + F + Sbjct: 575 THQALNEDFKDFL-EEVEPSEFKIFTQHQF-------LKKLDGENYKGKVDFKLT-FKER 625 Query: 111 AKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR--- 164 +A +E + I RL ++ FSG D + L++ Sbjct: 626 IRANYEALKLTQNIFHQNRLVATAKEQEVLAKFSGYGGLKALFYDDKYEKEKDELLKLVG 685 Query: 165 --RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 F F TP +V+ LL S + +P+CG G F++ Sbjct: 686 VKYFKELRDSSVSAFYTPSFIVNAMYERLL-----KLGLSQNEKVKVLEPSCGVGIFMSL 740 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A E + T + + + + Sbjct: 741 APE-------------NFEFEAVEKDSLTATIAK---FLH-----------PKVVIYNKG 773 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 +++ K F + NPP+ K+ D K HK F I +L Sbjct: 774 LEEVKFNKEFDLVIGNPPYAKE--SIYDVSSKGHKENVHNYFA-----IKCAELL----- 821 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 G + V+SS L S ++ R L + + L ++ F+ T Sbjct: 822 --------KENGLFSFVISSYFL-----DSQSAKHREILNDMGTLVDSYRLSSEAFYNTE 868 Query: 403 IATYLWILSNRK 414 + + L + RK Sbjct: 869 VISDLIFYAKRK 880 >gi|319936976|ref|ZP_08011386.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1] gi|319807912|gb|EFW04491.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1] Length = 2439 Score = 45.0 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 59/253 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S F TP +V+ + G L +P+CG G F+ Sbjct: 926 EEYASARESTLTAFYTPPEVITAIYKAM-----EQMGFQEG---NLLEPSCGIGNFIGML 977 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + D +G EL+ + + L ++ + N+ Sbjct: 978 PDTMQDSK----------IYGVELDTISAGIAQQ--LYQKTTIAAQGFEETNL------- 1018 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F + N PFG DK + + + F Sbjct: 1019 ----PDSFFDGVVGNVPFGDFKVSDKRYDKHKFLIHDY----------------FFAKSL 1058 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +KL GG A+V S + +R+++ + + + LP + F Sbjct: 1059 DKLRP----GGVMALVTSKGTM-----DKETLAVRKYIAQRAELLGAIRLPNNTFKGNAG 1109 Query: 401 TNIATYLWILSNR 413 T + + + IL R Sbjct: 1110 TEVVSDILILQKR 1122 >gi|295102472|emb|CBL00017.1| DNA methylase [Faecalibacterium prausnitzii L2-6] Length = 1989 Score = 45.0 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 97/342 (28%), Gaps = 77/342 (22%) Query: 105 ASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-H 161 ++ N +AI F E+ +L + + + + + Sbjct: 387 QKYARNIEAIRTLFKLEQEHRGATAEEQQVLSQYVGWGGLSDAFDPSKDNWAKEYAELKN 446 Query: 162 LIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ + + S T V+ + ++ + +P+ G G F Sbjct: 447 LLSEDEYTAARSSTLNAHYTSPVVIRSIYEAV--------EKMGFKSGNILEPSMGVGNF 498 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSK 274 + +AD +G EL+ T + A + + E+ R+D Sbjct: 499 FGMLPDTMAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRQDF-- 546 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + + N PFG+ ++ + A K N F + Sbjct: 547 -----------------YDLAIGNVPFGQ-YKVNDKAYNKLGFNIHNYFFAKAI------ 582 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 GG A V S +S R+ + E + + LP Sbjct: 583 -------------DQVRPGGVIAFVT-----SRYTMDSKDSTARKHMAECADLLGAIRLP 624 Query: 395 TDLF---FRTNIATYLWILSNRKT--EERRGKVQLINATDLW 431 + F T + + + L R + VQL D + Sbjct: 625 NNAFKANAGTEVVSDIIFLQKRDRPIDHEPDWVQLGKTEDGF 666 >gi|282858529|ref|ZP_06267701.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|282588714|gb|EFB93847.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] Length = 1279 Score = 45.0 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 57/213 (26%), Gaps = 48/213 (22%) Query: 151 PDRVMSNIYEHLIRRFGSE----VSEGAEDFMTPRDVVHLATA------LLLDPDDALFK 200 ++ ++E+L+ F E + F TPR++V LL + + Sbjct: 400 DPELLGRVFENLLADFNEETHESARKSTGSFYTPREIVDYMVDESIKNYLLGKNNLDIDA 459 Query: 201 ESPGM------------------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 S + DP CG+G F ++ + + Sbjct: 460 NSLNELFVKKNIPTNWNTSTCNDVADALRNIKILDPACGSGAFPMGCLHQIVELQEILCK 519 Query: 237 PPILVP-----------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 I +G +++P +C I + D + + + Sbjct: 520 GKIDRYNLKLAIIENCVYGVDIQPIAMLICKLRFFISLICEQTNVDFNS---PETNFGIN 576 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 + +N ++ + K Sbjct: 577 TLPNLETKFVAANSLISADIRSYENDWTADEKL 609 >gi|116492979|ref|YP_804714.1| adenine-specific DNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116103129|gb|ABJ68272.1| Adenine-specific DNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 334 Score = 45.0 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 95/293 (32%), Gaps = 46/293 (15%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 L KI + F + P+ + + ++ R E A TP V L ++ Sbjct: 59 LKKIYEGFKYNDYSPE-----ELRKAIQLVMIRANKEERIQANHQFTPEAVGMLFNYIIE 113 Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 + + T++DP GTG L+ +N+ + K G + + Sbjct: 114 NLKVDSNQL------TIFDPAVGTGNLLSTILNYFQTKRINFKGI------GVDNDDTML 161 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 ++ RLE + S D K +S+ P G Sbjct: 162 SIASMSFTFERLEVELFHQD----------SIDDLFVKNVDIAVSDLPVGY-------YP 204 Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 E G R G S + + + ++ GG + L S LF Sbjct: 205 IDERTKGFETRSKEGH------SFVHHLLIEQSMKTIRPGG--YGVFLVPSNLF---QTQ 253 Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQL 424 ++ + E ++AI+ LPT +F + IL + ++ +V L Sbjct: 254 EAKKLLSFFHEKVYLQAILNLPTKMFKDEQAQKSILILQKVGASAKQAEQVLL 306 >gi|322511144|gb|ADX06457.1| putative N-6 adenine specific DNA methylase [Organic Lake phycodnavirus 2] Length = 183 Score = 45.0 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 19/151 (12%) Query: 170 VSEGAEDFMTPRDVVHLATALLLD--PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH- 226 E + + TP +++ L + + T YDP G G F+ Sbjct: 28 NKENSGEVFTPLSIINDMLDELDESYKKEHNKSIFTEKHLTWYDPCVGIGNFVFLVYTRL 87 Query: 227 -----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + K + + E+ ++ + NI +G + Sbjct: 88 MNGLPIKNKEQRKKHILEHMIYSSEVTHNNVSIYK--------QIFCGDKYKLNIYEGDS 139 Query: 282 LSKDL---FTGKRFHYCLSNPPFGKKWEKDK 309 L D ++ +F L NPP+ K K Sbjct: 140 LMLDPQTFWSINKFDIILGNPPYNSNGTKHK 170 >gi|145301380|ref|YP_001144220.1| hypothetical protein ASA_P4G174 [Aeromonas salmonicida subsp. salmonicida A449] gi|142856157|gb|ABO92472.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 895 Score = 45.0 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 49/199 (24%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-----DPDDALFKESP 203 + + ++++ +I E T + L + K + Sbjct: 279 DINPDIFGSMFQAVID---VEQRGNLGQHYTSYSNIMKVIQPLFLDSLRAELEKNRKSAN 335 Query: 204 GMIR--------TLYDPTCGTGGFLTDAMNHVA---------------DCGSHHKIPPIL 240 G+ + ++DP CG+G FL A + G + Sbjct: 336 GLKKLLVRLGNIKVFDPACGSGNFLIIAYKELHTLERMVIQALQQLEPQQGFSMSSLHLD 395 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRD-------------LSKNIQQGSTLSKDLF 287 +G E++ + + + + + + + S NI G +L D Sbjct: 396 QFYGIEIDDFACEIARLALWLAEHQLNKQWEQTFGYAPPSLPLRSSGNIVSGDSLVLDWH 455 Query: 288 TG-----KRFHYCLSNPPF 301 + Y + NPPF Sbjct: 456 KVCPKGIEDEVYVIGNPPF 474 >gi|294775987|ref|ZP_06741483.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294450125|gb|EFG18629.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 246 Score = 45.0 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 20/121 (16%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++ L R G + F TP + L + + + DP Sbjct: 85 DALGDLSMALSSRKGQQA---QGQFFTPVHICDLMVMC-------TETDGKKTGQRINDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG+G L HV G +++ + + MLI + Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTICNMLIHGCVGEVIHHD 184 Query: 273 S 273 S Sbjct: 185 S 185 >gi|189461123|ref|ZP_03009908.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136] gi|189432213|gb|EDV01198.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136] Length = 1658 Score = 45.0 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 49/242 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP + A FK++ + T +P+ G GGFL +M Sbjct: 98 AFYTP----KFLVDAVTRQIHATFKDNCLQMSTFLEPSAGIGGFLPVSMPGTRSYAFEKD 153 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294 + L D + + G T++ + F Sbjct: 154 ------------------------CLTGLILSLLYDEATTVTAGFETIADQHLEHESFDV 189 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 SN PFG D + + K G + + + F+ + N GG Sbjct: 190 IASNIPFGNFRVFDAEMWK---KGGMYEQSAKTIH-----NYFFVKAM-----ELLNEGG 236 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411 A V G +R +L+ + + + LP LF +T+ + + L I Sbjct: 237 LLAFVAPRGIADT----PGNKFVREYLVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQ 292 Query: 412 NR 413 Sbjct: 293 KH 294 >gi|323126877|gb|ADX24174.1| type II restriction enzyme-methylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 982 Score = 45.0 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 59/432 (13%), Positives = 125/432 (28%), Gaps = 81/432 (18%) Query: 91 LGSTNTRNN--LESYIASFS---DNAKAIFEDFD-------FSSTIARLE-KAGLLYKIC 137 L N N L+SY+ + + + +F F + L + Sbjct: 247 LEDLNIETNGTLQSYLNTQNFWESFVRKTVSEFKLKYDGALFDIDLPNLALTNDVFVDFV 306 Query: 138 KNFSGI-ELHPDTVPDRVMSNIYEHLIRR--FGSEVS--------EGAEDFMTPRDVVHL 186 + +G D + ++ IY+ + R F + TP ++ Sbjct: 307 SSITGNSPYRFDVIKPSFIAEIYDQFLGRQLFVYDNKLQISNKPLSPDGAVPTPYEMSSY 366 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----------HHK 235 D + + + + DP G+G FL + + + K Sbjct: 367 ICKQ-TIQLDHISNINDLLKLKILDPCVGSGSFLLATLELLVEKYKTITNSERIALSDVK 425 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK---------NIQQGST----- 281 +G +++P V + ++ + S+ N + G+T Sbjct: 426 AIIKNCLYGVDIDPTALEVLKMTLSLKIVMSNFILPEPFSKILSAIDNNFKYGNTIVQED 485 Query: 282 ------------------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 L +F F Y ++NPP+ + + K H+ + Sbjct: 486 ALMLASEEFEQFPTKFEELFPIIFKEGGFDYVVTNPPY-VEPKHFKRKWPLTHRYLKN-- 542 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 L D SM F++ + + L+ G ++R +L Sbjct: 543 -KYNLSDKVDISMFFVLRINDLLKSDGKYGLVI--------QKRFFNTEYGRKVRNYLTT 593 Query: 384 NDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 ++ I ++ LF + KT ++ Q+ A Sbjct: 594 QGVLHTIHDFESNYLFKDKTTYIACLFGGSSKTSKKLELSQIRYAKHEGKLNSTRTNLNE 653 Query: 443 IINDDQRRQILD 454 +I + R +++ Sbjct: 654 VIMTETRSALIE 665 >gi|15896770|ref|NP_350119.1| site-specific modification DNA-methyltransferase [Clostridium acetobutylicum ATCC 824] gi|15026627|gb|AAK81459.1|AE007849_13 Site-specific modification DNA-methyltransferase [Clostridium acetobutylicum ATCC 824] gi|325510941|gb|ADZ22577.1| Site-specific modification DNA-methyltransferase [Clostridium acetobutylicum EA 2018] Length = 571 Score = 45.0 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 104/296 (35%), Gaps = 26/296 (8%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+R+ +E + TP+D+ ++ ++ I + +P+CG G FL Sbjct: 2 LLRKDATEE-RLTGRYFTPKDLASYIIDWVIQDNN---------INKILEPSCGNGVFLE 51 Query: 222 DAMNHVADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + G + +I + + R L +D + + Sbjct: 52 CLGERRLEDGRNITAIEIDEDVSFEASMQIDNSLRFNNCYDYQRALRNDGDIVNNGIVII 111 Query: 279 GSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 K G+RF + NPP+ + + ++E ++ L R K+ + Sbjct: 112 NDDFYKVYEQELQGQRFQAIVGNPPYIR--YQYLSEQQREEQSKILIRNNMRPNKLINAW 169 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + F++ A L +G G+ +V+ + L A ++RR+++ IV Sbjct: 170 VSFVVACAEIL----DGNGKMGLVIPAELLQVAYAE----DLRRFIMRTFQRITIVTFRE 221 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 +F L ++ R +++++ D+ + ND + + Sbjct: 222 LVFPNVQQEVVLLLVEKEILHTREHQLRIVEYQDINELTESNDLDEYPFNDVEINE 277 >gi|332878423|ref|ZP_08446145.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683643|gb|EGJ56518.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 667 Score = 45.0 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 95/332 (28%), Gaps = 57/332 (17%) Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + FS + D + E+ R S + F TP+++ ++ Sbjct: 67 LELFSMTVELHKLIRDNS-GSAMEY-KRYMDSLKASVLTAFYTPKEITDTLVSV------ 118 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 K+ + +P+ G G F++ H ++ ++ + Sbjct: 119 --LKDYGVTPSKVLEPSAGMGAFISSVKEH--------SPQADVMAFEKD-------LLT 161 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 +L D R + F +SN PFG+ D + Sbjct: 162 GRLLSHLYPEDKIRVSGFEKIE-------KPFNGTFDLAISNVPFGEVAVFDPAFAMSDS 214 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 P + K GG A + S + + R Sbjct: 215 ------------PTRKMAQKAVHNYFFLKGIDTVRDGGIVAFLTSQGVMNSPRNEP---- 258 Query: 377 IRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433 +R +L+ + + + LP +LF T + + L IL +E L L+T Sbjct: 259 VRLEMLKEARLVSAIRLPNNLFTENANTEVGSDLIILQKDTRKEG-----LTEDEKLFTQ 313 Query: 434 IRNE-GKKRRIINDDQRRQILDIYVSRENGKF 464 G + + QI+ + + Sbjct: 314 TGTLHGVNTGRYFIEHQEQIVCTKSKLDTDPY 345 >gi|257438751|ref|ZP_05614506.1| methylase [Faecalibacterium prausnitzii A2-165] gi|257198788|gb|EEU97072.1| methylase [Faecalibacterium prausnitzii A2-165] Length = 801 Score = 45.0 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 57/222 (25%), Gaps = 56/222 (25%) Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFK--- 200 + + ++E + T + +H L D + Sbjct: 176 DISPTIFGAVFESTL---NPVTRRKGGMHYTSIENIHKVIDPLFLDDLKNEFAEILTIGV 232 Query: 201 -----------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------- 240 ++ T DP CG+G FLT+ + + Sbjct: 233 QKQKKKKLEEFQNKLAGLTFLDPACGSGNFLTETYISLRRLENDILRELQNGQVIFGDTN 292 Query: 241 ---------VPHGQELEP-------ETHAVCVAGMLIRRLESDPRR------DLSKNIQQ 278 +G E+ + + M+ + + NI Sbjct: 293 WNPIKVSISQFYGIEINDFAGDVAKTALWIAESQMMKETEDVVLMHLDFLPLKSNVNIHI 352 Query: 279 GSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 G+ L D + + Y + NPPF + + KD + Sbjct: 353 GNALQMDWASIISPSKLSYIMGNPPFVGQSVRTKDQAHDMND 394 >gi|163849724|ref|YP_001637767.1| putative type II DNA modification enzyme [Methylobacterium extorquens PA1] gi|163661329|gb|ABY28696.1| putative type II DNA modification enzyme [Methylobacterium extorquens PA1] Length = 1322 Score = 45.0 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 46/216 (21%) Query: 127 LEKAGLL---YKICKNFSGIELHPDTVPD---RVMSNIYEHLIRR------------FGS 168 L LL Y++ + + P D + ++YE L+ F Sbjct: 395 LSNRDLLKAIYRLAWLKTDDGVMPVNWRDMQTEELGSVYESLLELTPRISADGREMLFAE 454 Query: 169 ------EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG------MIRTLYDPTCGT 216 + + TP +V + +DP + + DP CG+ Sbjct: 455 GLETRGNARKTTGSYYTPDSLVQVLLDTTIDPVMDQAVAGAADPVRALLGLRVIDPACGS 514 Query: 217 GGFLTDAMNH---------------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 G FL A + HG + P + + I Sbjct: 515 GHFLLAAARRLAARVARARNDGVASAEQYRDAVRDVVRQCIHGVDRNPMAVDLTKVALWI 574 Query: 262 RRLES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +E P L NI G L G++ L Sbjct: 575 ESIEPGKPLGFLDGNIVCGDALLGTFGYGEKLDAVL 610 >gi|16119916|ref|NP_396621.1| SNF2 family helicase [Agrobacterium tumefaciens str. C58] gi|15163586|gb|AAK91062.1| helicase, SNF2 family [Agrobacterium tumefaciens str. C58] Length = 1693 Score = 45.0 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 67/260 (25%), Gaps = 58/260 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S TP +V + + + P GTG F Sbjct: 154 DYASLARCTQYAHFTPEFIVRAIWS--------ALQRLGWRGGRVLAPGIGTGLFPALMP 205 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + D G EL+P T + I G ++ Sbjct: 206 EALRDLS---------HVTGVELDPVTARIVR------------LLQPRARILTGD-FAR 243 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F + NPPF + + A F+ + Sbjct: 244 TELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY---------------FVARSID 287 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 L+ G AA V S +G +S R + + + A + LP F T Sbjct: 288 LLKP----GAFAAFVTS-----SGTMDKADSSAREHIAKTADLIAAIRLPEGSFRADAGT 338 Query: 402 NIATYLWILSNRKTEERRGK 421 ++ + RK E G Sbjct: 339 DVVVDILFFRKRKVAELEGD 358 >gi|306835080|ref|ZP_07468123.1| GcrY protein [Corynebacterium accolens ATCC 49726] gi|304569061|gb|EFM44583.1| GcrY protein [Corynebacterium accolens ATCC 49726] Length = 620 Score = 45.0 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 48/199 (24%), Gaps = 54/199 (27%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD----DALFKESPGMIRT-------------L 209 E G + T + + L + +P Sbjct: 348 SKEARRGDGEHYTSKANIMKTIGPLFLDELRAEADKLVSTPSTSVAALERFRDSLSELIF 407 Query: 210 YDPTCGTGGFLTDAMNHVADCGSH--------------------HKIPPILVPHGQELEP 249 DP CG+G FL A + + + I +G EL Sbjct: 408 CDPACGSGNFLLLAYRELRRIETDVIVAIRQRRGETGMSLNIEWEQKLSIGQFYGFELNW 467 Query: 250 ETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDL----FTGKRF 292 + M + +++ + +I G+ L+ D Sbjct: 468 WPAKIAETAMFLVDHQANKELANAVGRPPERLPIKITAHIVHGNALAVDWRNALPETVGQ 527 Query: 293 HYCLSNPPFGKKWEKDKDA 311 Y NPPF K K Sbjct: 528 TYIFGNPPFIGHQTKSKQQ 546 >gi|288941148|ref|YP_003443388.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific [Allochromatium vinosum DSM 180] gi|288896520|gb|ADC62356.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific [Allochromatium vinosum DSM 180] Length = 310 Score = 45.0 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 25/159 (15%) Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +LI R F E + PR + + DP + + D G+G Sbjct: 90 YLIGRAWFAGLEFRVDEQVLVPRSPIAELVEVGFDPWIDADRVG-----RVLDLCTGSGC 144 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 A ++ D ++ PE + + + I + Sbjct: 145 IGIAAAVYLPDADVDL----------VDISPEALVIARDNVERHGVGDRVH------IFE 188 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + +R+ +SNPP+ + E + E ++ Sbjct: 189 SDLFA--ALGDQRYDVIVSNPPYVSRAEFEALPTEYHNE 225 >gi|227487648|ref|ZP_03917964.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092342|gb|EEI27654.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 1071 Score = 45.0 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 61/253 (24%), Gaps = 35/253 (13%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 D + S L+K Y+ E+ + +V+ +YE ++ +E Sbjct: 820 DALSDANLESETDGLQK---FYESV-RVRAAEVSSASGKQQVIKELYERFFQKAFKRDAE 875 Query: 173 GAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V D + K + DP GT F+ + Sbjct: 876 KLGIVYTPVEIVDFILRAANDVSLEHFGKGLSDEGVCILDPFAGTSTFMVRLLQSGLIKP 935 Query: 232 SHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 E+ T+ A R + P I Sbjct: 936 DDMARKYAGELFATEIMLLAYYVSAVNIETTYNALRAEQAQRNGDPAPDYIPFDGIALAD 995 Query: 281 TL----------------SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 T + D ++ + + NPP+ D Sbjct: 996 TFQIHEKGDTPDLGFFVDNNDRIERQKKARINVIVGNPPYSVGQTSANDNNANMKYKTLD 1055 Query: 322 GRFGPGLPKISDG 334 R S G Sbjct: 1056 SRIAATYAAKSTG 1068 >gi|120434627|ref|YP_860317.1| hypothetical protein GFO_0260 [Gramella forsetii KT0803] gi|117576777|emb|CAL65246.1| conserved hypothetical protein-most likely a DNA methylase [Gramella forsetii KT0803] Length = 908 Score = 45.0 bits (105), Expect = 0.044, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 70/295 (23%), Gaps = 67/295 (22%) Query: 55 VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS--FSDNAK 112 + ++YL D GY F L + + + Y+ FS++ + Sbjct: 204 IFQEYLDLHTKE-DGSDLAAQLGYIFQVLDTPREKRLKNIHEAADQFPYVNGQLFSESLR 262 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 FD + + + ++ + + ++++ + Sbjct: 263 --LPSFDSE-----------MRTMLLDACALDWG--KISPAIFGSMFQ---AAMNPDERR 304 Query: 173 GAEDFMTPRDVVHLATALLLDPD-------------DALFKESPGMIRTLYDPTCGTGGF 219 T + L + DP CG G F Sbjct: 305 DLGAHYTSEANIQKVIKPLFLDELRTEFKKVKSSSKKLKAFHDRISKLKFLDPACGCGNF 364 Query: 220 LTDAMNHVADCG-----------------SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 L + + I +G E + + M + Sbjct: 365 LIITYRELRELELDILRELNKTGQGFLNVGDIIKVDIDQFYGIEYDEFPARIAEVAMWLM 424 Query: 263 RLESDPRRDLSKN-------------IQQGSTLSKDLFTGKRF---HYCLSNPPF 301 + + + I+ + L D + + L NPPF Sbjct: 425 DHQMNMKLSEEFGQYFVRLPLKKSVSIRNENALRLDWKELVKPSELDFILGNPPF 479 >gi|148259803|ref|YP_001233930.1| hypothetical protein Acry_0792 [Acidiphilium cryptum JF-5] gi|146401484|gb|ABQ30011.1| hypothetical protein Acry_0792 [Acidiphilium cryptum JF-5] Length = 573 Score = 45.0 bits (105), Expect = 0.044, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 57/203 (28%), Gaps = 32/203 (15%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP + + + + DP CG G FL+ +AD Sbjct: 96 SDFGAYYTPPALCDRLLDIATECGVD------WRTAHVLDPACGGGAFLSPVARRMADSL 149 Query: 232 SH-----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSK 284 S G EL+P + + I + + G TL + Sbjct: 150 SDCSAPIALKNIAHRLRGYELDPFAAWMSQVFLEITLMPLCRKAGARLKDVVGVCDTLER 209 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHL 342 + G + + NPP+G+ + R G ++ LF Sbjct: 210 EP-DGSGYDLVIGNPPYGR-------ITLSPALREKYARSLYGH-----ANLYGLFTDVA 256 Query: 343 ANKLELPPNGGGRAAIVLSSSPL 365 GG A V +S L Sbjct: 257 LRHTRP----GGVIAYVTPTSFL 275 >gi|325833145|ref|ZP_08165693.1| helicase C-terminal domain protein [Eggerthella sp. HGA1] gi|325485701|gb|EGC88168.1| helicase C-terminal domain protein [Eggerthella sp. HGA1] Length = 1860 Score = 45.0 bits (105), Expect = 0.045, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 72/261 (27%), Gaps = 58/261 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R + F TP +V + ++ DP GTG F A Sbjct: 114 REYAKARESTLTAFYTPPEVAKAIW--------DYLVMAGFAAGSVLDPAAGTGRF---A 162 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 A+ K+ + EL+P + + + P + + +TL+ Sbjct: 163 DAMPAELAGRAKLTMV------ELDPVSALIAK--------HAHPGMAVQCKGYEATTLA 208 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D F ++N PFG+ + E F L Sbjct: 209 DD-----SFDVAVTNVPFGQ-FSVYDRRHAGEGMLVHDYFFAKAL--------------- 247 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 GG A + +S L S RR L + LP F Sbjct: 248 ----DHVRPGGLVAFITASGTL-----DKKTSAARRELATRAELVCAARLPDSTFQASAG 298 Query: 401 TNIATYLWILSNRKTEERRGK 421 T + + + +L R + Sbjct: 299 TTVTSDVVVLKKRAERIPKED 319 >gi|146281056|ref|YP_001171209.1| hypothetical protein PST_0661 [Pseudomonas stutzeri A1501] gi|145569261|gb|ABP78367.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 801 Score = 45.0 bits (105), Expect = 0.045, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 18/131 (13%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + V+ + Y+ L+ + + +F TP +V + S Sbjct: 83 TDNLTVARSRDVLKHFYQDLV---PDALRKSLGEFYTPDWLVEVTL--------DKTGVS 131 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVC 255 + DPTCG+G FL + + G +L P Sbjct: 132 DWTDKRFLDPTCGSGSFLLATIKRIRQQAEAASWSQKATLEHITRSVWGFDLNPLAVQAA 191 Query: 256 VAGMLIRRLES 266 +LI + Sbjct: 192 RVNLLISITDL 202 >gi|282897280|ref|ZP_06305282.1| hypothetical protein CRD_02204 [Raphidiopsis brookii D9] gi|281197932|gb|EFA72826.1| hypothetical protein CRD_02204 [Raphidiopsis brookii D9] Length = 600 Score = 45.0 bits (105), Expect = 0.045, Method: Composition-based stats. Identities = 39/310 (12%), Positives = 82/310 (26%), Gaps = 46/310 (14%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 E + LEK YK + + + + ++ +Y+ R ++ E Sbjct: 164 DTLEKESLGKEVETLEK---FYKSVRERASGIDNAEGKQKIII-ELYDKFFRTAFPKLVE 219 Query: 173 GAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP +VV + DP GTG F+ + Sbjct: 220 RLGIVYTPVEVVDFIIKSANFALHQEFGVGLTDEGVHILDPFTGTGTFMVRLLQSGLIKP 279 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESDPRRDLS--------KNIQQ 278 K H E+ + + + + ++ + + I Sbjct: 280 QDLKRKFSHELHCNEIVLLAYYIAAINIEESYHFLIGIQEESNSFSTRKGEYEPFNGIVL 339 Query: 279 GST---------LSKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEK--EHK 317 T L +++F + + NPP+ + + D + K Sbjct: 340 TDTFQMFENEGYLLENIFPENNQRVISQKQRDITVIIGNPPYSAGQKSENDGNKNLSYPK 399 Query: 318 NGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374 + R + + G V + S L + A Sbjct: 400 LDDKIRSTYAKYSSATLKNSLYDSYIRAIRWATDRIQEKGIVCFVTNGSFLDSNSADG-- 457 Query: 375 SEIRRWLLEN 384 +R+ L+++ Sbjct: 458 --LRKCLVDD 465 >gi|256419630|ref|YP_003120283.1| hypothetical protein Cpin_0584 [Chitinophaga pinensis DSM 2588] gi|256034538|gb|ACU58082.1| hypothetical protein Cpin_0584 [Chitinophaga pinensis DSM 2588] Length = 826 Score = 45.0 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 68/261 (26%) Query: 118 FDFSSTIARLEK--AGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLIR---------- 164 F + ++ L LL + K+FS I+ +S YE L+ Sbjct: 72 FAQENLLSTLIDSVNPLLIHLVNKHFSEIDTTDVL--SLDISTFYETLLGIETGNENNLV 129 Query: 165 --RFGSEVSEGAEDFMTPRDVVHLATA---------------LLLDPDDALFKESPGMIR 207 G + TP ++ T L Sbjct: 130 EISTGKNYRNKLGSYYTPSELAKSITQKTIDTFFTSNFGINKLSTANHVDAAILKEISSI 189 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKI---PPILVPHGQELEPETH-------AVCVA 257 + D +CG G FL + + + ++ + + + V Sbjct: 190 SFVDFSCGGGNFLIEILKYFEQVANNLNVTAEEKLQILRSVAKNISAFDVDCLALEVAKL 249 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--------------------------R 291 +L+ +S+N G+ L + F + Sbjct: 250 NLLLSTGLHHAYATVSENFIHGNFLLQSTFPIDEKKKIEIFSSGFIYHEALSIFKEKVSK 309 Query: 292 FHYCLSNPPFGKKWEKDKDAV 312 + L NPP+ K ++K Sbjct: 310 YDVILGNPPWEKIRFEEKKFY 330 >gi|291551202|emb|CBL27464.1| DNA methylase [Ruminococcus torques L2-14] Length = 2439 Score = 45.0 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 75/253 (29%), Gaps = 59/253 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S F TP +V+ ++ L +P+CG G F+ Sbjct: 926 EEYASARESTLTAFYTPPEVITTIYK--------AMEQMGFKEGNLLEPSCGIGNFIGML 977 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + D +G EL+ + + L ++ + N+ Sbjct: 978 PDSMQDSK----------IYGVELDTISAGIAQQ--LYQKTTIAAQGFEETNL------- 1018 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F + N PFG DK + + + F Sbjct: 1019 ----PDSFFDGVVGNVPFGDFKVSDKRYDKHKFLIHDY----------------FFAKSL 1058 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +KL GG A V S + +R+++ + + + LP + F Sbjct: 1059 DKLRP----GGVMAFVTSKGTM-----DKETLAVRKYIAQRAELLGAIRLPNNTFKGNAG 1109 Query: 401 TNIATYLWILSNR 413 T + + + IL R Sbjct: 1110 TEVVSDILILQKR 1122 >gi|291525613|emb|CBK91200.1| DNA methylase [Eubacterium rectale DSM 17629] Length = 2510 Score = 45.0 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 51/407 (12%), Positives = 104/407 (25%), Gaps = 92/407 (22%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDL----------ESFVKVAGYSFYNTSEYSLS 89 + +R + ++ E + + + V+ YN + + Sbjct: 805 VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAVQKKHNFHYNL--WEME 862 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 G+ I + + + + +A E+ L F G Sbjct: 863 KGGAKTRYQWNMDAIRT--------LKQIESENRLATPEEQKTL----SKFVGWGGLSQA 910 Query: 150 VPDRVMSNIYEH-----LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + E+ L+ + + + F T ++ + L+ + Sbjct: 911 FDENNAGWSKEYAELKDLLSDEEYSAARATVNNAFYTSPEIAMCINSALV--------QF 962 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + +P+ G G F +G EL+ + + Sbjct: 963 GFRGGNVLEPSMGIGNFFGSM----------PAPMQRSKLYGVELDSISGRIAK------ 1006 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + + NI + + F + N PFG D + + + Sbjct: 1007 ------QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY- 1058 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 K GG A++ + L IR++L Sbjct: 1059 -------------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLA 1094 Query: 383 ENDLIEAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424 E + V LP F T + + L RK + V L Sbjct: 1095 ERAELVGAVRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1141 >gi|312601301|gb|ADQ90556.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168] Length = 473 Score = 45.0 bits (105), Expect = 0.047, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 92/269 (34%), Gaps = 36/269 (13%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228 + TP +V L ++ L K + D +CG G FL + Sbjct: 6 SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58 Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + K HG ++E + A+ A ++++ + + + + Sbjct: 59 AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL + F G + + + NPP+ + + + + K +G +D + F Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L +S S F +AGS R +L +N +I+++V FF+ Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429 T ++ + + N T+ Sbjct: 219 ATTYTTIFTIDKSARNQMVDYFNFDNKTN 247 >gi|269977129|ref|ZP_06184102.1| type III restriction enzyme, res subunit [Mobiluncus mulieris 28-1] gi|269934432|gb|EEZ90993.1| type III restriction enzyme, res subunit [Mobiluncus mulieris 28-1] Length = 1703 Score = 45.0 bits (105), Expect = 0.047, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 64/245 (26%), Gaps = 31/245 (12%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165 S + I + + + L K + + D +M +Y+ + Sbjct: 848 SHAMQGILDRLAENQVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 905 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224 ++ + TP VV + F + G + +P GTG F+T + Sbjct: 906 AFPKLGDRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 965 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278 + E+ ++ + + + R D I Sbjct: 966 QSELISPEQLEHKYRHEIFANEIVLLSYYIASINIEQVYREIRREQGIDEGYVEFPGITL 1025 Query: 279 GSTLS-----------KDLFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318 T +D + + NPP+ +K D + Sbjct: 1026 TDTFQLAEGQNQIPCIRDFQANLKRVQAQRAADIQVVVMNPPYSAGQKKANDNNQNLKYP 1085 Query: 319 GELGR 323 GR Sbjct: 1086 WLDGR 1090 >gi|34540632|ref|NP_905111.1| type IIS restriction endonuclease [Porphyromonas gingivalis W83] gi|34396946|gb|AAQ66010.1| type IIS restriction endonuclease, putative [Porphyromonas gingivalis W83] Length = 1132 Score = 45.0 bits (105), Expect = 0.047, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 67/246 (27%), Gaps = 61/246 (24%) Query: 104 IASFSDN-AKAIFEDFDFSSTIARLEKAGL-------LYKICK--NFSGIELHPDTV--- 150 + FS N + F +TI L L I NF+ E P+ Sbjct: 355 LDGFSRNDTRFANGRFKHRATIP----NNLFFAPERGLVSILSRYNFTIEENSPEEQQVA 410 Query: 151 -PDRVMSNIYEHLIRRFG----SEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFKE- 201 ++ ++E+L+ + + F TPR+VV+ + D L + Sbjct: 411 LDPELLGKVFENLLGAYNPETQETARNQSGSFYTPREVVNYMVDESLISYLGDSDLVRSL 470 Query: 202 -------------------SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV- 241 S + DP CG+G F +N + + Sbjct: 471 FRPDFVLQEDNKVQCEAIASKLKAVKILDPACGSGAFPMGLLNRMIELLERISPQEKSYD 530 Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 +G +++ + I + R + N Sbjct: 531 LKLFVIENCLYGSDIQSIAAQITKLRFFISLICDCERDETKPN------FGIPTLPNLET 584 Query: 293 HYCLSN 298 + +N Sbjct: 585 KFVAAN 590 >gi|290890764|ref|ZP_06553831.1| hypothetical protein AWRIB429_1221 [Oenococcus oeni AWRIB429] gi|290479536|gb|EFD88193.1| hypothetical protein AWRIB429_1221 [Oenococcus oeni AWRIB429] Length = 1200 Score = 45.0 bits (105), Expect = 0.047, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 71/266 (26%), Gaps = 46/266 (17%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215 +Y+ SE ++ TP +V + D K + DP G Sbjct: 843 TLYDKFFSTGFSETTQRLGIVFTPVQIVDFIIKSVDFALDKYFGKHLADENVHILDPFVG 902 Query: 216 TGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGM--LIRRLES 266 TG F+ + +N++A H E+ ++ + + + + Sbjct: 903 TGTFIAETLNYLATQMKAGKITLADITRKYTQELHANEIVLLSYYIAAINIEAVFDEING 962 Query: 267 DPRRDLSKNIQQGS---------TLSKDLFTGKR----------FHYCLSNPPFGKKWEK 307 + I TL +DLF G ++NPP+ Sbjct: 963 PEKYIPFDGIVLTDTFESTEQTETLDQDLFGGNNERLKKQQEVPITAIIANPPYSVGQNN 1022 Query: 308 DKDAVEKEHKNGELGRFGPGLPKI---------SDGSMLFLMHLANKLELPPNGGGRAAI 358 D + H + + S G + G Sbjct: 1023 QNDNQQNVH----YSKLEAHIASTYVQNSQSGLSKGVYDSYIKAFRWATDRIGDKGVIGF 1078 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLEN 384 V + S L +G R+ L + Sbjct: 1079 VTNGSFLDSGSTDG----FRKSLYDE 1100 >gi|261212130|ref|ZP_05926416.1| hypothetical protein VCJ_002402 [Vibrio sp. RC341] gi|260838738|gb|EEX65389.1| hypothetical protein VCJ_002402 [Vibrio sp. RC341] Length = 1066 Score = 45.0 bits (105), Expect = 0.047, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 66/212 (31%), Gaps = 41/212 (19%) Query: 100 LESYIASFSDNAKAIFEDFDFSSTIA--------RLEKAGL-------LYKICKNFSGIE 144 +E+YI IFE SS I +L K L L +I S Sbjct: 277 MEAYIER-----SEIFEQAGLSSFIEEVIFSWYIQLAKDNLSDKLLLALRQILSRLSLYR 331 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 L ++ ++Y+ L+ ++ + +F TP +V + D + Sbjct: 332 LDYLKKTRDILRDLYQGLV---PGKLRQSLGEFYTPDWLVDFTVDKVADEEI-------- 380 Query: 205 MIRTLYDPTCGTGGFLTDA-------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 + + + DPTCG+G FL + + G +L P Sbjct: 381 VSKKILDPTCGSGAFLLAIIRKKRTQAELLNLNYNDTLKMLCDTVWGFDLNPLAVQTARV 440 Query: 258 GMLIRRLESD---PRRDLSKNIQQGSTLSKDL 286 LI + P ++ I + Sbjct: 441 NFLIEIADLLEKCPGSEIEVPILLADAIYSPA 472 >gi|205374511|ref|ZP_03227307.1| hypothetical protein Bcoam_15611 [Bacillus coahuilensis m4-4] Length = 329 Score = 45.0 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 58/385 (15%), Positives = 122/385 (31%), Gaps = 66/385 (17%) Query: 72 FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKA 130 F+N + + +T + L+ +Y+ + ++ + +F+ + L K Sbjct: 1 MKDFTVEGFFNVLDET-----ATIIKEELDITYLEALAETGENMFQGEVLQDDLHDLVKR 55 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190 L + + + Y+ +I + E + MTP + L T L Sbjct: 56 KLSKQY------ESVQLSLTAKETIRKSYQLVILKGMKE-NVQPNHQMTPDSIGLLMTFL 108 Query: 191 L--LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 L + T+ DPT GTG L MN + + + +G +++ Sbjct: 109 LEKFLHEKTEL--------TILDPTVGTGNLLVTIMNRLHET--------FSLGYGVDVD 152 Query: 249 PETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + A +L + + +L + LF P + Sbjct: 153 DVLIRLAYVSANLL----------EQPIQLYNQDSL-EPLFVDPVDVVVSDLPVGYYPND 201 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + + + G S L + N + GG ++ + LF Sbjct: 202 ERAKSFALQANQGH-----------SYAHHLLIEQSINYTKP----GGYLFFLIPNG-LF 245 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLI 425 +++R +L + I+ I+ LPT LF A + I+ + + +V L Sbjct: 246 ESEYA---ADLRSYLKDEAYIQGILQLPTSLFKNERNAKSILIIQKKSADVRAPKEVLLA 302 Query: 426 NATDL--WTSIRNEGKKRRIINDDQ 448 + + ++ K + Sbjct: 303 SLPKMSDMRAMETILNKINEWIKEN 327 >gi|306818935|ref|ZP_07452656.1| helicase domain protein [Mobiluncus mulieris ATCC 35239] gi|304648337|gb|EFM45641.1| helicase domain protein [Mobiluncus mulieris ATCC 35239] Length = 1116 Score = 45.0 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 61/245 (24%), Gaps = 31/245 (12%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165 S + I + + + L K + + D +M +Y+ + Sbjct: 850 SHAMQGILDRLAENQVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 907 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224 ++ + TP VV + F + G + +P GTG F+T + Sbjct: 908 AFPKLGDRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 967 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278 + E+ ++ + + + D I Sbjct: 968 QSELISPEQLEHKYRHEIFANEIVLLSYYIASINIEQVYREIRLEQGIDEGYVEFPGITL 1027 Query: 279 GSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 T + + NPP+ +K D + Sbjct: 1028 TDTFQLAERQNQIPCIGDFQANLERVQAQRAAKIQVVVMNPPYSAGQKKANDNNQNLKYP 1087 Query: 319 GELGR 323 GR Sbjct: 1088 WLDGR 1092 >gi|238029062|ref|YP_002913287.1| Eco57I restriction endonuclease [Burkholderia glumae BGR1] gi|237880639|gb|ACR32967.1| Eco57I restriction endonuclease [Burkholderia glumae BGR1] Length = 597 Score = 45.0 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 79/265 (29%), Gaps = 48/265 (18%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 A + ++ +F P ++ +IY ++ S + + TP +V Sbjct: 91 ADDIGRLVADF------PAEDAGYLIGSIYTVML---PSSLRSKMGAYYTPPPLVARLLD 141 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + L + T DP CG G FL + L G+ L+ Sbjct: 142 QIEAAGFDLARG------TAIDPACGGGAFLAPLALRMVAHDGGASPEWTLRRLGKRLKG 195 Query: 250 ---ETHAVCVAGMLIRRLESDPRRDLSKN-----IQQGSTLSKDLFTGKRFHYCLSNPPF 301 + A ++ P +K + G L +F + NPP+ Sbjct: 196 LEIDRFA-AWMTTVLLEAAVLPLCVAAKRRLPDVVVVGDALRPRDH--GQFELVIGNPPY 252 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIV 359 G+ E R G ++ LF ++ G A + Sbjct: 253 GR-------VTLDEPMRNHYARSLYGH-----ANLYGLFTDLALRLVKPA----GILAYL 296 Query: 360 LSSSPLFNGRAGSGESEIRRWLLEN 384 +S L G +R+ L +N Sbjct: 297 TPTSFL----GGQYFKALRQLLTDN 317 >gi|237716415|ref|ZP_04546896.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229444062|gb|EEO49853.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 1135 Score = 45.0 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 83/311 (26%), Gaps = 62/311 (19%) Query: 68 DLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIA 125 + E A F N + L + + FS NA K+ +F + + + Sbjct: 158 EEEILTLFAHVPFLNGGLFECLDKPKDLYLNQEYDIFYDGFSRNATKSSNGNFKYRAFVP 217 Query: 126 RL------EKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SE 169 + E L + K NF+ E P ++ ++E+L+ + Sbjct: 218 NILFFNDDEDQPGLINLLKQYNFTIEENSPTDAVISLDPELLGRVFENLLAAYNPETQES 277 Query: 170 VSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP--------------------- 203 + F TPR +V LL E Sbjct: 278 ARKSTGSFYTPRPIVDYMVDEAIKSYLLGKRLDRISEEKLNALFKERTVSTDWTDSNKDA 337 Query: 204 ----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELE 248 + DP CG+G F + + D K + +G +++ Sbjct: 338 IANALKQVKILDPACGSGAFPMGCLLRIVDIIELLKGDTVDRYQLKLTIIENCVYGVDIQ 397 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308 P +C I + D S + + + +N Sbjct: 398 PIAMLICKLRFFISLICEQNDIDFSS---PETNFGINTLPNLETKFVAANTLISANIRNY 454 Query: 309 KDAVEKEHKNG 319 +D + K Sbjct: 455 EDDWTNDEKLD 465 >gi|331018142|gb|EGH98198.1| endonuclease-methyltransferase fusion protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 835 Score = 44.6 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 58/431 (13%), Positives = 110/431 (25%), Gaps = 91/431 (21%) Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 + E + Y S L + + Y+ + + + K++ + S Sbjct: 218 KPELSEEELNDLTQN--YINSIVFLRVCEDRDLEDYETLYLLAKTKDFKSLIQKLKNSDK 275 Query: 124 -----------IARLEKA--GLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIR---R 165 I L ++ I + F ++ NIYE + R Sbjct: 276 KYNSGLFALSYINTLINNADSCIWPIIEELYFPQSTYSFSVFSSEILGNIYEVFLSERIR 335 Query: 166 FGSEVSEGAE---------DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++ + TP +V + + D CG+ Sbjct: 336 INADGKIELQPKKDHIDRDVVTTPGHIVRDIIRNTAVEFCRSKTDKQILNSKFADIACGS 395 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV------CVAGMLIRRLESDPRR 270 G FL + + D + I Q+L P + + + I ++ D Sbjct: 396 GAFLLELFQALQDILIDYYIVHDKSKL-QQLTPHSFKLKLCVKKEILTKCIYGIDKDFNA 454 Query: 271 DLS-----------------------------KNIQQGSTL--------------SKDLF 287 + NI G++L Sbjct: 455 VKACSFGLLLKLLEGESKDTIELNTSILPKIDNNILFGNSLIDSNDNIKTTDAIAVNPFN 514 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 RF + NPP+ + + K D LF+ L+ Sbjct: 515 IVHRFDVIIGNPPY---MATEHMKQLTPLELPIYKNKYKSAHKQFDKYFLFVERSMQLLK 571 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATY 406 G +L S G +R+ L E + +++ + +F T Sbjct: 572 DE----GFLGYILPSKFTKVGAGQG----LRKLLTEQKYLSKLISFGASQVFKDKTTYTC 623 Query: 407 LWILSNRKTEE 417 L L K + Sbjct: 624 LLFLKKSKQTK 634 >gi|325300601|ref|YP_004260518.1| helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324320154|gb|ADY38045.1| helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 1671 Score = 44.6 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 82/268 (30%), Gaps = 61/268 (22%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP + D A F+ + ++++ +P+ G GGFL +M Sbjct: 101 AFYTP----KFLIEAVTDQIRATFQANGLLMKSFLEPSAGIGGFLPVSM----------- 145 Query: 236 IPPILVPHGQELEPETHAVC-VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P+T+ V + + S + D I T+ F Sbjct: 146 -------------PDTYKVAFEKDLATGLVLSALQPDTKAVIGGFETIKAQELEYDTFDV 192 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD----GSMLFLMHLANKLELPP 350 SN PFG D D + G P + F+ + Sbjct: 193 IASNIPFGTINVFDADFERR------------GTPYKQSLKAIHNYFFIKAM-----ELL 235 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEI-RRWLLENDLIEAIVALPTDLFFRTN---IATY 406 N GG A + G A S + R +L+ + I + LP LF +T + + Sbjct: 236 NEGGLLAFIT-----SRGVADSPSNRFVREYLVHHAHIITALRLPDTLFMQTGGIEVGSD 290 Query: 407 LWILSN--RKTEERRGKVQLINATDLWT 432 L IL K + + T Sbjct: 291 LIILQKDSHKQNLTTRERLFLETCRERT 318 >gi|317010727|gb|ADU84474.1| type II adenine specific methyltransferase [Helicobacter pylori SouthAfrica7] Length = 545 Score = 44.6 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LEILENSSDLENLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTSQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----AFCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 R++ D NI Q LS +F +NPP+GKK+ +++ K Sbjct: 177 RIKERYHLDC-PNIVQKDFLSLKHTP--QFDCIFTNPPWGKKYHQNQ-------KENFKQ 226 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 RF L + D + LF M + L+ + G Sbjct: 227 RFN--LSQSLDSASLFFMASLDCLKENAHLG 255 >gi|306833660|ref|ZP_07466787.1| SNF2 family protein [Streptococcus bovis ATCC 700338] gi|304424430|gb|EFM27569.1| SNF2 family protein [Streptococcus bovis ATCC 700338] Length = 2274 Score = 44.6 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 78/309 (25%), Gaps = 62/309 (20%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T ++ + + DP+ GTG F Sbjct: 669 KEYSDMKQSSLTAYYTDPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAM 720 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + +G EL+ T A+ + I+ T+ Sbjct: 721 PKQLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV- 760 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F +SN PF + R+ D + + Sbjct: 761 --AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFV 797 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K + GG+ AI+ G I + + E V LP F Sbjct: 798 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAG 852 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VS 458 T + T + + + + + + + Q+L Y + Sbjct: 853 TTVTTDMLFFQKHLNKGYVADDLAFSGSIRYDKDSRIWLNP-YFDGEYNSQVLGTYEVRN 911 Query: 459 RENGKFSRM 467 G FS Sbjct: 912 FNGGTFSVK 920 >gi|227549090|ref|ZP_03979139.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227078819|gb|EEI16782.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 1655 Score = 44.6 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 66/287 (22%), Gaps = 40/287 (13%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 + + +L+K Y+ + + +V+ +YE R+ + +E Sbjct: 821 DAMANNHLDAETEKLDK---FYESV-RMRAAAVTSASGKQQVIKELYERFFRKAFKKQAE 876 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V D F + DP GT F+ + Sbjct: 877 SLGIVYTPVEIVDFILRATDDLSRKHFGRGLSDEGVCILDPFAGTSTFMVRLLQSGLIKP 936 Query: 232 SHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 E+ T+ A R P NI Sbjct: 937 EDIARKYANELFATEIMLLAYYVSAVNIETTYNALRAEEAQRNGLPTPEYVPFNNIALAD 996 Query: 281 TL--SKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 T +D + + NPP+ D Sbjct: 997 TFQIHEDGDIPDLEIFRDNNATIERQKNAPINVVIGNPPYSAGQRSANDLNANLKYPSLD 1056 Query: 322 GRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSS 363 R S + + L+ + G A V + Sbjct: 1057 KRIAETYAAKSRATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGG 1103 >gi|282900075|ref|ZP_06308032.1| hypothetical protein CRC_01466 [Cylindrospermopsis raciborskii CS-505] gi|281194957|gb|EFA69897.1| hypothetical protein CRC_01466 [Cylindrospermopsis raciborskii CS-505] Length = 717 Score = 44.6 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 66/296 (22%), Gaps = 73/296 (24%) Query: 55 VREKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113 E Y + + G + + N I S Sbjct: 339 YLEYYSIERLRELAERPRYRREGFQDIWQGLRVTFKLFD-----ENWRGQILGLSPLNGD 393 Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-------HPDTVPDRVMSNIYEHL---- 162 +F + L + S E + + + ++YE L Sbjct: 394 LFGSQTLTDLDDCGIDNYDLLTAIRCLSLYEDKGQLRRVNYAALDVEELGSVYESLLDFH 453 Query: 163 --------IRRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPG------- 204 I F + + TP +V L+P Sbjct: 454 PQVNNSQGIYEFNLIFGTDRKTTGSYYTPPQLVQQLIKTALEPVIEEKLRESNNRELRVG 513 Query: 205 ---------------------MIRTLYDPTCGTGGFLTDAMNHV---------------- 227 + + DP CG+G FL A + Sbjct: 514 SRESGNNTNYELRITNYELSLLSIKVIDPACGSGHFLLAAARRIGKELAKVRTGESQPAP 573 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282 + +G +L P +C + I P L I+ G++L Sbjct: 574 EPLRIAIRDVIQNCIYGVDLNPLAVDLCKVALWIEGFATGKPLNFLDHRIKCGNSL 629 >gi|325268850|ref|ZP_08135475.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella multiformis DSM 16608] gi|324988822|gb|EGC20780.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella multiformis DSM 16608] Length = 489 Score = 44.6 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 47/300 (15%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + F T + ++ + L D G+G Sbjct: 16 FVSSNAKAGRKQYGQFFTSESIAVFMASMFHIDLE-------KDSLRLLDAGAGSGILSV 68 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++ + + G + + + +++ +L + L S + I+ + Sbjct: 69 ALLSRIREIGYTGSVKLVCYENDEKVLG---------VLAKNLTSVKDSHFTFEIRHENY 119 Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 ++ F G+ + + NPP+ K + DA+ + G P Sbjct: 120 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHMKEVC-------YGAP-- 170 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-- 389 + LF + L N GG V+ S + A + R++LL + I Sbjct: 171 -NLYFLFWAMGIHNL----NEGGELVYVIPRS--WTSGAY--FARFRKYLLSHCAITDIH 221 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQ 448 I +F + I+ RK R K+++ ++ T + +R + D Sbjct: 222 IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIRISSSDTSDFLDLRRFDVDYNTVVADN 281 >gi|86605042|ref|YP_473805.1| hypothetical protein CYA_0321 [Synechococcus sp. JA-3-3Ab] gi|86553584|gb|ABC98542.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 1525 Score = 44.6 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 42/171 (24%) Query: 154 VMSNIYEHLIRR-----FGSEVS-----------EGAEDFMTPRDVVHLATALLLDP-DD 196 + ++YE L+ F ++ + + + TP D+V L+P Sbjct: 412 ELGSVYESLLDYRPQILFTAQATPQFELSYGSERKSTGSYYTPPDLVAELVRSALEPVLQ 471 Query: 197 ALFKESPGMIRT--------LYDPTCGTGGFLTDAMNHV----------------ADCGS 232 K + + DP CG+G FL A + Sbjct: 472 ERLKSAASREEKERAILSLRVLDPACGSGHFLLAAARRLGKELAKVRTGEEEPAPETVRE 531 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282 + +G + P +C + + P L I+ G +L Sbjct: 532 AIRDVVAHCIYGVDKNPLAVELCRVALWLEAHCAGKPLTFLDHRIKCGDSL 582 >gi|325288126|ref|YP_004263916.1| type I restrictioN-modification system, M subunit [Cellulophaga lytica DSM 7489] gi|324323580|gb|ADY31045.1| type I restrictioN-modification system, M subunit [Cellulophaga lytica DSM 7489] Length = 37 Score = 44.6 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR 42 MT A L + IWK A ++ G DF +L+ Sbjct: 1 MTSNNQ-RAELQSQIWKIANEVRGSVDGWDFKH----LIILK 37 >gi|251771370|gb|EES51950.1| type III restriction enzyme, res subunit [Leptospirillum ferrodiazotrophum] Length = 1628 Score = 44.6 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 68/263 (25%), Gaps = 30/263 (11%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMI 206 D V+ N+Y+ + ++++ TP +VV Sbjct: 842 DKSRQDVIRNLYDTFFQAAFPKLADRLGIVYTPVEVVDFIIKSADFALRKEFGVGLSDPG 901 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 + DP GTG FL+ + H EL + + + L++ Sbjct: 902 VNILDPFAGTGTFLSRLIQSGIISPDRLPDKYREELHATELVLLAYYIASLNIESAFLQA 961 Query: 267 DPRRDLSKNIQQGSTL--------------------SKDLFTGKRFHYCLSNPPF--GKK 304 + G T D L NPP+ + Sbjct: 962 SGESLPFPGMVLGDTFQMGEGGKSKMFPKFLEENNARADRQNQADIRVILGNPPYRANQG 1021 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHL--ANKLELPPNGGGRAAIVLS 361 + K + R + + + L+ ++ G V + Sbjct: 1022 DSNQNNQNLSYEKLDKSIRDTYAAGSTAVNKNSLYDSYIRAFRWASNRIRKQGVICYVTN 1081 Query: 362 SSPLFNGRAGSGESEIRRWLLEN 384 + +G G R+ L E Sbjct: 1082 GGWI-DGNTTDG---FRKILAEE 1100 >gi|260905073|ref|ZP_05913395.1| hypothetical protein BlinB_07059 [Brevibacterium linens BL2] Length = 1586 Score = 44.6 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 24/229 (10%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFL 220 + R + + + TP + + L + + T+ +P G+G F Sbjct: 535 FVFRLSGRDRQQSASYYTPEVLTRFTVSQALAELLTEDMRADDILSLTVCEPALGSGAFA 594 Query: 221 TD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + A ++ QEL+ + + + ++ + Sbjct: 595 LEAVNQLAAEYLRRKQEEVGDRIDPAVFQQELQKVKAYIALHN--VYGVDLNSTAVELAE 652 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-----HKNGELGRFGPGLPK 330 I +L D LS P FG + + + + + P+ Sbjct: 653 I----SLWLD-----TMVAGLSAPWFGLRLRRGNSLIGARRSVYSRSTVKDKTWLKSTPE 703 Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 S + L G G AA L A + R+ Sbjct: 704 KSTADARDPQSIYQFLLPA-EGWGAAADAKEGKKLAP-DAVTRLKNWRK 750 >gi|315641008|ref|ZP_07896094.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952] gi|315483232|gb|EFU73742.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952] Length = 1002 Score = 44.6 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 11/192 (5%) Query: 108 SDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 S+ I E+ F ++ Y K + + + ++ +Y+ + Sbjct: 796 SEAMDKIVEELSKFGGFNKEQDELKEFYDSVKLRAEGIDNAEAKQRIII-TLYDKFFSKG 854 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMN 225 E ++ TP +VV + D F K + DP GTG F+ ++ Sbjct: 855 FKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKAIEDEGVHILDPFTGTGTFIVRTLH 914 Query: 226 HVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQ 277 ++ D S+ + H E+ ++ + + E + + I Sbjct: 915 YLKDKLSNGEITLADVTRKYTQELHANEIVLLSYYIAAINIESTFAEINHEEYKPFEGIV 974 Query: 278 QGSTLSKDLFTG 289 T Sbjct: 975 LTDTFESTEQED 986 >gi|295086872|emb|CBK68395.1| Helicase conserved C-terminal domain./SNF2 family N-terminal domain./N-6 DNA Methylase. [Bacteroides xylanisolvens XB1A] Length = 1947 Score = 44.6 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 80/265 (30%), Gaps = 55/265 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ +L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ D +Q + K F Sbjct: 152 IMAFEK----------------DLMTGKILGYLHPDQKVRVQGFEKIEKPF--TDYFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +SN PFG D + E + R + + FL K GG Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSQDPARRSA---PKAIHNYFFL-----KSLDAVREGG 240 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILS 411 A + S L + IR +++ N + + LP +LF T + + L IL Sbjct: 241 IVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLIILQ 296 Query: 412 NRKTEERRGKVQLINATDLWTSIRN 436 ++R L + +L+ Sbjct: 297 KNSGKKRE----LYDYEELFVQTEK 317 >gi|307700715|ref|ZP_07637740.1| helicase C-terminal domain protein [Mobiluncus mulieris FB024-16] gi|307613710|gb|EFN92954.1| helicase C-terminal domain protein [Mobiluncus mulieris FB024-16] Length = 1487 Score = 44.6 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 39/310 (12%), Positives = 74/310 (23%), Gaps = 36/310 (11%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165 S + I + + + L K + + D +M +Y+ + Sbjct: 639 SHAMQGILDRLAENRVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 696 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224 ++ TP VV + F + G + +P GTG F+T + Sbjct: 697 AFPKLGNRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 756 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278 E+ ++ + + + R D I Sbjct: 757 QSGLISPEQLDHKYRHEIFANEIVLLSYYIASINIEQVYREIRREQGIDEGYVEFPGITL 816 Query: 279 GSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 T + NPP+ + D + + Sbjct: 817 TDTFQLAERQNQIPCIGDFQANLERVQAQRAADIQVVVMNPPYSAGQDSANDNNQNLNYP 876 Query: 319 GELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 GR S + + L+ G A V +SS + A Sbjct: 877 SLDGRIADTYAARSSATNKNSLYDSYYRALRWASDRIKDEGIIAFVSNSSFIDGNTADGV 936 Query: 374 ESEIRRWLLE 383 + E Sbjct: 937 RLTWAKEFSE 946 >gi|291536942|emb|CBL10054.1| Site-specific DNA methylase [Roseburia intestinalis M50/1] Length = 840 Score = 44.6 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 69/397 (17%), Positives = 118/397 (29%), Gaps = 70/397 (17%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSG 142 S+ TN + I +F + + F + TI +LE A L K +N Sbjct: 365 RQSIGEAVPTNVFFQIAENIKNFME--QEHFTTAIINKTIENYKLEDAENLIKFIQN--- 419 Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + N I + E + T +L+ Sbjct: 420 --------NPLNLGNASLARIAELTNSKRENNAAYYT--------NKFILNEIFKELPSI 463 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 + T+ +P+ G G FL + K I V E + +A Sbjct: 464 EKDVITILEPSVGIGNFL----PFIFKKYEETKEVNIDVVDIDGRNLEILRLLLA----- 514 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGEL 321 + ++ N Q TL D K + + NPPF K K + ++ Sbjct: 515 --KQKIPSNMKLNFIQADTLLYDF--NKHYDLVIGNPPFSKLKSKDAAKYLKNNINKETT 570 Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 F F + A L ++ + L R L Sbjct: 571 NTFE------------FFLEKAMTLSDY------VVMITPKAVLNTPEFRKT-----RDL 607 Query: 382 LENDLIEAIVALPTDLFFRTNIAT-YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440 L I+ I + F + T L++ +N K E + + T + +K Sbjct: 608 LATKKIDCIQDYGENGFKGVLVETICLFVGTNEKPNETKVESL--------TLKKTVVQK 659 Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477 ++ I D + + IY + S+ LD+ F R Sbjct: 660 QKYITDKEYPYWI-IYRNDFFDGISQRLDFDKFTVFR 695 >gi|240142519|ref|YP_002967030.1| hypothetical protein MexAM1_META2p0852 [Methylobacterium extorquens AM1] gi|240012464|gb|ACS43689.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 468 Score = 44.6 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 63/209 (30%), Gaps = 31/209 (14%) Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 T VV + PD L DP+ G G FL A+ +A Sbjct: 26 YTSVPVVEALLDRMGWPDADG---------RLLDPSSGDGSFLVSALRRIATPAGDFDAL 76 Query: 238 PI---LVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 H Q +E + +LI R ++ + D F Sbjct: 77 ARVQGWEMHPQAVEQARERI--VDLLISRGWNEHEALRGAEAVAHEGDFLTDN-PQGTFR 133 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPN 351 + NPP+ + +V KE + P LP + G +L FL + + Sbjct: 134 FVAGNPPYLR--WGHLPSVLKET-------WSPVLPSFARGDLLHAFLDRSVSIM----P 180 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRW 380 G +V S LFN I R Sbjct: 181 EDGVIGLVTSDRWLFNATTTGLRRTIGRK 209 >gi|229037726|ref|ZP_04189561.1| Restriction-modification system LlaBIII [Bacillus cereus AH1271] gi|228727580|gb|EEL78721.1| Restriction-modification system LlaBIII [Bacillus cereus AH1271] Length = 1571 Score = 44.6 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 66/236 (27%), Gaps = 34/236 (14%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 +N E F+ LE LY+ K + + ++ +Y+ Sbjct: 805 ENIVKELEKAGFAKEQENLEP---LYESVKMRAEGVEKSEDKQKIII-TLYDKFFSTAFK 860 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHV 227 +E TP +VV + D F K + DP GTG F+ + ++ Sbjct: 861 STTERLGIVFTPIEVVDFIVKSVDDVLKKHFGKSLASEGVHILDPFTGTGTFIVRTLTYL 920 Query: 228 ADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQ 277 + + H E+ ++ + + E + + I Sbjct: 921 KEQMDKGEITLADIARKFTQELHANEIVLLSYYIAAINIESTFDEINGDEQGYVPFEGIV 980 Query: 278 QGSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEK 314 T ++D F + NPP+ + + + Sbjct: 981 LTDTFESTENEDTLDDAYFGTNDERLKRQQELPITAIIGNPPYSGRDSDENSFSDA 1036 >gi|160887401|ref|ZP_02068404.1| hypothetical protein BACOVA_05420 [Bacteroides ovatus ATCC 8483] gi|156107812|gb|EDO09557.1| hypothetical protein BACOVA_05420 [Bacteroides ovatus ATCC 8483] Length = 1125 Score = 44.6 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 47/201 (23%) Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189 NF+ E P+ ++ ++E+L+ + E E + F TPR++V+ Sbjct: 406 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 465 Query: 190 -------------LLLDPDDALFKESPG---------MIRTLYDPTCGTGGFLTDAMNHV 227 L +PD L +E P + DP CG+G F +N + Sbjct: 466 SLITYLGDTQFVRSLFNPDFTLDREKPEEYQRVAKRLKAIKILDPACGSGAFPMGLLNRM 525 Query: 228 ADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 D + +G +++ + I + + N Sbjct: 526 IDVLCRISPNEKVYDLKLAIIENCIYGSDIQSIAAQITKLRFFISLICDCEKDASKPN-- 583 Query: 278 QGSTLSKDLFTGKRFHYCLSN 298 + +N Sbjct: 584 ----FGIPTLPNLETKFVAAN 600 >gi|119715823|ref|YP_922788.1| type II restriction-modification system modification subunit [Nocardioides sp. JS614] gi|119536484|gb|ABL81101.1| type II restriction-modification system modification subunit [Nocardioides sp. JS614] Length = 221 Score = 44.6 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 30/138 (21%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTDA------- 223 + + +TPR +V L+ + P + +T +P G G FL Sbjct: 20 KTYGEVLTPRHMVDRMLDLV----RDELEAGPDFVDKTFLEPAAGDGNFLVAILHRKLRA 75 Query: 224 --MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML---IRRLESDPRRDLSK---- 274 + + + + +G EL + H A ML + + Sbjct: 76 VQQRYPHEEWPEASLFALASIYGIELLEDNHRDAKAVMLAEFLHFHDEHEIPCGPDTEQR 135 Query: 275 ---------NIQQGSTLS 283 NI +G T++ Sbjct: 136 QAATFLIDTNIVRGDTIT 153 >gi|238063211|ref|ZP_04607920.1| DNA methylase [Micromonospora sp. ATCC 39149] gi|237885022|gb|EEP73850.1| DNA methylase [Micromonospora sp. ATCC 39149] Length = 1188 Score = 44.6 bits (104), Expect = 0.056, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 30/203 (14%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + R + ++Y+ L + + TP V +P F Sbjct: 189 EDLDTRFLGDLYQDL----SAHAKKTYALLQTPDFVEEFILDRTFEPAVKEFGL---PDT 241 Query: 208 TLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVP---HGQELEPETHAVCVAG 258 ++ DPTCG+G FL A + + ++ G ++ P A+ Sbjct: 242 SVIDPTCGSGHFLLGAFGRLVKLWRKREPAGDIRVLVERALGQVTGVDINPFAVAIARFR 301 Query: 259 MLIRRLE------SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 +L+ ++ + + G +L + G++ + +GK A Sbjct: 302 LLVAAMKECGLTSLERTPAWPVRVATGDSLLR---WGRKSSHQGDLLEYGKGESGFAYAT 358 Query: 313 EKEHKNGELGRFG-----PGLPK 330 E G+ R G G P Sbjct: 359 EDADVLGKYLREGQYTVVVGNPP 381 >gi|168178693|ref|ZP_02613357.1| restriction endonuclease family protein [Clostridium botulinum NCTC 2916] gi|226948533|ref|YP_002803624.1| restriction endonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|182671306|gb|EDT83280.1| restriction endonuclease family protein [Clostridium botulinum NCTC 2916] gi|226841692|gb|ACO84358.1| restriction endonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 741 Score = 44.6 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 19/158 (12%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135 F N + L ++ N + YI + + DF L L K Sbjct: 92 LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I +G + + + IYE +I E + F TP ++ + Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F L D + G G F+ A + + + Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE 232 >gi|154243764|ref|YP_001409337.1| DEAD-like helicase [Xanthobacter autotrophicus Py2] gi|154162886|gb|ABS70101.1| DEAD-like helicase [Xanthobacter autotrophicus Py2] Length = 1417 Score = 44.6 bits (104), Expect = 0.058, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 77/269 (28%), Gaps = 58/269 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 TP +V A + + +P GTG F + D Sbjct: 169 AHFTPEFIVRAVW--------AGLRRLGWRGGRVLEPGIGTGLFPALMPESLRD------ 214 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + G EL+P T + I G ++ F Sbjct: 215 ---VSHVTGIELDPVTARIVR------------LLQPRARIIAGD-FARTELPAN-FDLA 257 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPPF + + A F++ + L+ G Sbjct: 258 IGNPPFSDRTVRSDRAYRSMGLRLHDY---------------FIVRAIDLLKP----GAL 298 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412 AA V S+ + + R + ++ + + LP F T++ L Sbjct: 299 AAFVTSAGTM-----DKADGSAREHIAKSADLVGAIRLPEGSFRASAGTDVVVDLLFFRK 353 Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKR 441 RK + G + ++ ++ + +EG R Sbjct: 354 RKIGDAEGDLAWLDLDEVRPATEDEGPIR 382 >gi|300744060|ref|ZP_07073079.1| methylase [Rothia dentocariosa M567] gi|300379785|gb|EFJ76349.1| methylase [Rothia dentocariosa M567] Length = 762 Score = 44.6 bits (104), Expect = 0.059, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 38/154 (24%), Gaps = 37/154 (24%) Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--- 241 L D + DP CG G FL + + + + Sbjct: 186 RLIRNKTTSLKDFDNFLNDLSTHVFCDPACGGGNFLNLTYAKLREIETDVLVEKRNRGGE 245 Query: 242 -----------------PHGQELEPETHAVCVAGMLIRRLESDPRR-------------D 271 +G E+ + M + +++ + Sbjct: 246 FTASLDISIDQRLSINQFYGFEINWWAAKIAETAMFLVDHQANLHLAQALGDAPNRLPIE 305 Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPF 301 ++ +I + L D K Y NPPF Sbjct: 306 IAAHIIHDNALRLDWKKAIPEPKGKTYIFGNPPF 339 >gi|121583280|ref|YP_973716.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2] gi|120596538|gb|ABM39974.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2] Length = 584 Score = 44.6 bits (104), Expect = 0.059, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 33/256 (12%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 G + + TP + DD + + + +DP CG FL Sbjct: 92 GEKRRTEQALYFTPPKLADRVI------DDLVQRGASLTTVHWHDPACGGAAFLVPTAQR 145 Query: 227 VADC-------GSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQ 277 +A G +L+ ++ M + +R +++ Sbjct: 146 MAQALAGLGLASGEVLKRIERQLSGNDLDKALLSLSRQFLLMALYPHIKAAQRFPDFDLR 205 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 L + + NPP+ K + + K+ + L Sbjct: 206 NEDGLLPPPSKYQAPDVVICNPPYRKLNAAETQRYASKFKDVIRS--------QPNIYGL 257 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--T 395 F+ N ++ GG ++ +S L +G+ S++R +++ I I L T Sbjct: 258 FIREALNVVKP----GGLIGLLTPTSFL----SGASFSKLRSRIVDLSHILQIDMLSDRT 309 Query: 396 DLFFRTNIATYLWILS 411 +F T + +L Sbjct: 310 SMFIAVEQETVISVLR 325 >gi|72080664|ref|YP_287722.1| hypothetical protein MHP7448_0327 [Mycoplasma hyopneumoniae 7448] Length = 480 Score = 44.6 bits (104), Expect = 0.060, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228 + TP +V L ++ L K + D +CG G FL + Sbjct: 13 SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 65 Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + K HG ++E + A+ A ++++ + + + + Sbjct: 66 AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 122 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL + F G + + + NPP+ + + + + K +G +D + F Sbjct: 123 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 173 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L +S S F +AGS R +L +N +I+++V FF+ Sbjct: 174 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 225 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429 T ++ + ++ N T+ Sbjct: 226 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 254 >gi|126697508|gb|ABO26711.1| TspDTI restriction endonuclease [Thermus sp. DT] Length = 1112 Score = 44.6 bits (104), Expect = 0.060, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 29/194 (14%) Query: 133 LYKICKNFSGIELHP----DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 L + + + + +Y +L+ R E+ ++ TP LA Sbjct: 336 LRALIERLDEYDPTTLSLFPEETRDLFKKLYHYLLPR---EIRHNLGEYYTPD---WLAW 389 Query: 189 ALLLDPDDALFKESPGMIR----------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 LL+ D+ F +P DP CG+G F + + + G +P Sbjct: 390 RLLVQLDNTFFAGTPSPNDEKLRQKLLSTRFLDPACGSGTFPVLVIGRMLELGRLLMVPE 449 Query: 239 IL-------VPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 G +L P + I L + D++ I ++ Sbjct: 450 RDLLEAILKNVVGFDLNPLAVLTARVNYLLAISDLLQYRQGDITIPIYLADSVRTPAEGQ 509 Query: 290 KRFHYCLSNPPFGK 303 F + P Sbjct: 510 DLFSQGIFVFPTAV 523 >gi|119509399|ref|ZP_01628548.1| type IV site-specific deoxyribonuclease Eco57I related protein [Nodularia spumigena CCY9414] gi|119466013|gb|EAW46901.1| type IV site-specific deoxyribonuclease Eco57I related protein [Nodularia spumigena CCY9414] Length = 1298 Score = 44.6 bits (104), Expect = 0.060, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 92/323 (28%), Gaps = 75/323 (23%) Query: 33 KVILP-FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF------YNTSE 85 +VIL F L+R LE + F++ +F YNT Sbjct: 221 QVILNRFLLIRLLETFSREMPFNYLGRVYHNWQQTFPDLPFIEDLRRAFHNTWMGYNTEL 280 Query: 86 YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-- 143 + S + YI S I I + + G+LY I + Sbjct: 281 FQPSWIDQLMID---VEYIQS-------II-------VINAVPQEGILYTITGTLANYRS 323 Query: 144 --ELHPDTVPDRVMSNIYEHLIRRF------------GSEVSEGAEDFMTPRDVVHLAT- 188 T+ ++ YE + + + F TP +V Sbjct: 324 IYNYDFTTLTQDILGTAYEQFLAHQLTLVGDVVKILENQQTRKREGIFYTPDYIVRRIVY 383 Query: 189 ALLLDPDDALFKESPGMIR-----------------TLYDPTCGTGGFLTDAMNHVADCG 231 L S G + T+ DP CG+G FL A +++ Sbjct: 384 QTLQPAIKPKIDASIGFLEVGEFHQAYTVASSVLDLTIIDPACGSGSFLLGAFDYILSEI 443 Query: 232 SH-------HKIPPILVPHGQE-----LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 KIP + PE + + ++ DP+ L + Sbjct: 444 KRYNQACTTAKIPENFDLFSHVSVQPIINPEEQIMVKM---LHGVDRDPQAVLLAKLSLW 500 Query: 280 STL--SKDLFTGKRFHYCLSNPP 300 + L S+ GKR S+ P Sbjct: 501 TKLLRSRPDEYGKRSGSIYSHLP 523 >gi|54020460|ref|YP_115851.1| hypothetical protein mhp340 [Mycoplasma hyopneumoniae 232] gi|53987633|gb|AAV27834.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 473 Score = 44.6 bits (104), Expect = 0.060, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228 + TP +V L ++ L K + D +CG G FL + Sbjct: 6 SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58 Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + K HG ++E + A+ A ++++ + + + + Sbjct: 59 AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL + F G + + + NPP+ + + + + K +G +D + F Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L +S S F +AGS R +L +N +I+++V FF+ Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429 T ++ + ++ N T+ Sbjct: 219 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 247 >gi|306836838|ref|ZP_07469796.1| helicase domain protein [Corynebacterium accolens ATCC 49726] gi|304567299|gb|EFM42906.1| helicase domain protein [Corynebacterium accolens ATCC 49726] Length = 1397 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 66/285 (23%), Gaps = 40/285 (14%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 + + LEK Y+ E+ + +V+ +YE R+ + +E Sbjct: 573 LSKANLDTETESLEK---FYESV-RIRASEVTSASGKQQVIKELYERFFRKAFKKQAEAL 628 Query: 175 EDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 TP ++V + K ++ DP GT F+ + Sbjct: 629 GIVYTPVEIVDFILRAADEVSRKHFGKGLSDESVSILDPFAGTSTFMVRLLQSGLIKPED 688 Query: 234 HKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 E+ T+ R E P NI T Sbjct: 689 LARKYANELFATEIMLLAYYVSAVNIETTYNALREEAAQRNDELAPEYVPFTNIALADTF 748 Query: 283 -------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + + + + NPP+ + D + R Sbjct: 749 QVHEEGDIPDLNIFRENNATIERQKNAPINVVIGNPPYSAGQKSANDLNANQKYPSLDQR 808 Query: 324 FGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSS 363 S + + G A V + Sbjct: 809 IADTYAAKSTATSQRTLYDSYLRAFRWATDRIGDQGIVAFVSNGG 853 >gi|83649641|ref|YP_438076.1| type I restriction-modification system methyltransferase subunit [Hahella chejuensis KCTC 2396] gi|83637684|gb|ABC33651.1| Type I restriction-modification system methyltransferase subunit [Hahella chejuensis KCTC 2396] Length = 1000 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 55/395 (13%), Positives = 109/395 (27%), Gaps = 84/395 (21%) Query: 39 TLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95 R L E ++ +K + ++ + L T Sbjct: 189 LFFRFLVDRNIVKETDLPSISQKAESLSELFSTPQAMED------------TCLWLDKTF 236 Query: 96 TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT------ 149 + L + + IF D I ++ + L I + + +L D Sbjct: 237 NGDLLSLEDNGY----QRIFRHID--DNIEKVCWS--LSNIQHHAANGQLQLDWGWIKFQ 288 Query: 150 -VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 VP V+S +YE +F +++ TPR + + + Sbjct: 289 HVPVDVLSQVYEDFAHQFVPDLARKTSVHFTPRQIAEVVIEGAFSAVKSALPHE----AR 344 Query: 209 LYDPTCGTGGFLTDAMNH----------VADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 + DP+ G G FL A+ V + G ++ + + Sbjct: 345 VLDPSAGAGVFLVLALRRLVAEHWLHTGVRPTRQVIRQVLANQLSGFDINLDALNIAALS 404 Query: 259 MLIRRLESDPRRDLSKNIQQGS---------------------TLSKD--LFTGKRFHYC 295 + + LE DP+ +++ +LS+ + Sbjct: 405 LYLAALELDPKPSPLTDLKFKKLIGSVLRLVDNESLGTKTDLGSLSQPIIQGIENHYDIV 464 Query: 296 LSNPPFGKKWEKDKDA--------VEKEHKNGELGRFGPG-LPKISDGSMLFLMHLANKL 346 + NPP+ + + E G + + + FL+ Sbjct: 465 VGNPPWTGFKGGAAKSLNETLAQLIRHEADTTVAKSEADGVVARYGSPDIAFLLAARLWT 524 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 + G A+ L LF A +RR + Sbjct: 525 KPE----GAIALALHGRFLFQKDA----YALRRHV 551 >gi|15807788|ref|NP_285443.1| hypothetical protein DR_A0119.1 [Deinococcus radiodurans R1] gi|6460532|gb|AAF12238.1|AE001862_64 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 671 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 30/183 (16%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-------------ELEPETHA- 253 + DP CG+G FL A+ + D ++ ++ G+ +E ET A Sbjct: 124 RILDPACGSGNFLFVALKKLLDLEYQVRMAAVMNDIGEFEMPPLVHPQQMLGIEIETFAH 183 Query: 254 -VCVAGMLI--------RRLESD-PRRDLSKNIQQGSTLSKDLFTGKRF---HYCLSNPP 300 + + + + P NIQ L T + + + NPP Sbjct: 184 ELASITLWMGYFQWKRAHGGHWETPILQRLDNIQNRDALLNPDGTEATWPRADFIVGNPP 243 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F + + + + + F LP SD ++ + + RA V Sbjct: 244 FLGD-KMMRSQLGEAYTTQLRETFKDRLPGQSD--LVCYWPEKARALIEAGVTTRAGFVT 300 Query: 361 SSS 363 ++S Sbjct: 301 TNS 303 >gi|144227574|gb|AAZ44408.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J] Length = 473 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228 + TP +V L ++ L K + D +CG G FL + Sbjct: 6 SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58 Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + K HG ++E + A+ A ++++ + + + + Sbjct: 59 AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL + F G + + + NPP+ + + + + K +G +D + F Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L +S S F +AGS R +L +N +I+++V FF+ Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429 T ++ + ++ N T+ Sbjct: 219 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 247 >gi|312964340|ref|ZP_07778639.1| putative helicase [Escherichia coli 2362-75] gi|312290970|gb|EFR18845.1| putative helicase [Escherichia coli 2362-75] Length = 1868 Score = 44.6 bits (104), Expect = 0.062, Method: Composition-based stats. Identities = 63/388 (16%), Positives = 118/388 (30%), Gaps = 82/388 (21%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 55 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 93 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 94 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 142 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 143 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 183 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 184 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 238 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ L ++ ++ E + + Sbjct: 239 RKHPAEMAEKIPLVDEGTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 285 Query: 472 TFGYR-RIKVLRPLRMSFILDKTGLA-----RLEADITWRKLSPLHQSFWLDILKPMMQQ 525 G++ RI+V R +D L R E+ I W L S D++ + Sbjct: 286 EKGFQGRIEV----RADGQIDNLALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMR 341 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKAS 553 + W + I+++ K LK+ A+ Sbjct: 342 LINGVWQKYAGGRWIEADAGKELKIDAA 369 >gi|265753906|ref|ZP_06089261.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235620|gb|EEZ21144.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1032 Score = 44.6 bits (104), Expect = 0.062, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 49/242 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP + A FK++ + T +P+ G GGFL +M Sbjct: 98 AFYTP----KFLVDAVTRQIHATFKDNCLQMSTFLEPSAGIGGFLPVSMPGTRSYAFEKD 153 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294 + L D + + G T++ + F Sbjct: 154 ------------------------CLTGLILSLLYDEATTVTAGFETIADQHLEHESFDV 189 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 SN PFG D + + K G + + + F+ + N GG Sbjct: 190 IASNIPFGNFRVFDAEMWK---KGGMYEQSAKTIH-----NYFFVKAM-----ELLNEGG 236 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411 A V G +R +L+ + + + LP LF +T+ + + L I Sbjct: 237 LLAFVAPRGIADT----PGNKFVREYLVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQ 292 Query: 412 NR 413 Sbjct: 293 KH 294 >gi|327314238|ref|YP_004329675.1| Eco57I restriction endonuclease [Prevotella denticola F0289] gi|326945278|gb|AEA21163.1| Eco57I restriction endonuclease [Prevotella denticola F0289] Length = 487 Score = 44.6 bits (104), Expect = 0.062, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 47/300 (15%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + F T + ++ + L D G+G Sbjct: 14 FVSSNAKAGRKQYGQFFTSESIAVFMASMFHIDLE-------KDSLRLLDAGAGSGILSV 66 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++ + + G + + + +++ +L + L S + I+ + Sbjct: 67 ALLSRIREIGYTGSVKLVCYENDEKVLG---------VLAKNLASVKDSHFTFEIRHENY 117 Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 ++ F G+ + + NPP+ K + DA+ + G P Sbjct: 118 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHMKEVC-------YGAP-- 168 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-- 389 + LF + L N GG V+ S + A + R++LL + I Sbjct: 169 -NLYFLFWAMGIHNL----NEGGELVYVIPRS--WTSGAY--FARFRKYLLSHCAITDIH 219 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQ 448 I +F + I+ RK R K+++ ++ T + +R + D Sbjct: 220 IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIRISSSDTSDFLDLRRFDVDYNTVVADN 279 >gi|71893673|ref|YP_279119.1| hypothetical protein MHJ_0319 [Mycoplasma hyopneumoniae J] Length = 480 Score = 44.6 bits (104), Expect = 0.062, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228 + TP +V L ++ L K + D +CG G FL + Sbjct: 13 SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 65 Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + K HG ++E + A+ A ++++ + + + + Sbjct: 66 AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 122 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL + F G + + + NPP+ + + + + K +G +D + F Sbjct: 123 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 173 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L +S S F +AGS R +L +N +I+++V FF+ Sbjct: 174 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 225 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429 T ++ + ++ N T+ Sbjct: 226 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 254 >gi|237786182|ref|YP_002906887.1| hypothetical protein ckrop_1616 [Corynebacterium kroppenstedtii DSM 44385] gi|237759094|gb|ACR18344.1| hypothetical protein ckrop_1616 [Corynebacterium kroppenstedtii DSM 44385] Length = 954 Score = 44.6 bits (104), Expect = 0.063, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 44/160 (27%), Gaps = 40/160 (25%) Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH--------------------KIPPILVPHGQE 246 DP CG G FL A + + + I +G E Sbjct: 401 MVFLDPACGCGNFLVVAYRELRRIETDIIVALRAKEGQQTASMDVSLDQRLSIGQFYGFE 460 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDL----FTG 289 L + M + +++ R + +++ G+ L D + Sbjct: 461 LNWWPAKIAETAMFLVDHQANRRLAEAVGDAPERLPITITAHVRHGNALRMDWAQEVPST 520 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGP 326 K Y NPPF ++ K + + G Sbjct: 521 KGDTYVFGNPPFIGQYTKTAEQTADMKQVWGKDYDGYLDY 560 >gi|188591330|ref|YP_001795929.1| putative restriction endonuclease/methyltransferase [Cupriavidus taiwanensis] gi|170938725|emb|CAP63711.1| putative restriction endonuclease/methyltransferase [Cupriavidus taiwanensis LMG 19424] Length = 1068 Score = 44.6 bits (104), Expect = 0.063, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 58/189 (30%), Gaps = 19/189 (10%) Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFG 167 N + ED DF + L + + D + ++ +Y+ L+ Sbjct: 267 NVERFIED-DFFHWVNAEPYFSRLKPAFREINNRIGEYDLTDVREDILKGVYQELVD--- 322 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + ++ TP + + + DP CG+G FL A+ + Sbjct: 323 LDTRHALGEYYTPDWLCEKIVE----------ETRFTETYRVLDPACGSGSFLRAAIAKM 372 Query: 228 ADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK--NIQQGSTLSK 284 + G ++ P + + ++I + + + +I ++L Sbjct: 373 RNESPQIDATTISRRVVGIDIHPLSVQIAKTTIIIAMGKLIAQSNDPVTLHIYLANSLLV 432 Query: 285 DLFTGKRFH 293 + F Sbjct: 433 PETSADLFE 441 >gi|225022944|ref|ZP_03712136.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii ATCC 33806] gi|305681942|ref|ZP_07404746.1| putative site-specific DNA-methyltransferase (adenine-specific) [Corynebacterium matruchotii ATCC 14266] gi|224944167|gb|EEG25376.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii ATCC 33806] gi|305658415|gb|EFM47918.1| putative site-specific DNA-methyltransferase (adenine-specific) [Corynebacterium matruchotii ATCC 14266] Length = 571 Score = 44.2 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 18/136 (13%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + + TP ++ ++ D T+ DP CG G L Sbjct: 8 AAANVKVHGQHYTPPELAEFLADHIVAAADLD-----RPELTIIDPACGDGELLVAVARS 62 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + IL G +++ A + + + QG L Sbjct: 63 LK----DAGYLGILKLIGYDIDAAAVEQARARL--------RDVNRDAQVIQGDFLLHQR 110 Query: 287 -FTGKRFHYCLSNPPF 301 ++NPP+ Sbjct: 111 NLPTHSVDIIITNPPY 126 >gi|144575384|gb|AAZ53699.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 473 Score = 44.2 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228 + TP +V L ++ L K + D +CG G FL + Sbjct: 6 SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58 Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + K HG ++E + A+ A ++++ + + + + Sbjct: 59 AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 TL + F G + + + NPP+ + + + + K +G +D + F Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 L +S S F +AGS R +L +N +I+++V FF+ Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429 T ++ + ++ N T+ Sbjct: 219 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 247 >gi|313887008|ref|ZP_07820708.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923534|gb|EFR34343.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] Length = 2056 Score = 44.2 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 77/247 (31%), Gaps = 52/247 (21%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F T R +V S ++ DP+ G G F V + K Sbjct: 105 FYTDRRIVSAI--------SDALATSGVTLKRCLDPSSGMGAFAETFAKQVGIVDALEK- 155 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFH 293 +L R+ NI + + L +++ Sbjct: 156 ---------------------DLLTARISQALHPYGEGNIFVRNEPFEAIAPLEETEKYD 194 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 SN PFG D ++E+ G I + + K G Sbjct: 195 LVTSNIPFG-----DFMVYDREYSRGNDLFKKESTRAIHN-------YFFVKGLDCTREG 242 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWIL 410 G A + S L A E IRR+L++N + + + LP+ +F T + + L +L Sbjct: 243 GLIAFITSQGVL---DAALNE-PIRRYLMQNSRLISAIRLPSGMFNEQAGTEVGSDLIVL 298 Query: 411 SNRKTEE 417 + +E Sbjct: 299 QKQSGKE 305 >gi|291524354|emb|CBK89941.1| DNA methylase [Eubacterium rectale DSM 17629] Length = 2929 Score = 44.2 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 66/260 (25%), Gaps = 58/260 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + T V+ + + +P+CG G F Sbjct: 1372 EEYAAARGSTLNAHYTSPTVIRAIYETVG--------RMGFETGNILEPSCGVGNFFGML 1423 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+ + + ++D + I + Sbjct: 1424 PEEMR----------NSRLYGVELDSISGRIAKQ----LYPKADITVAGFETIDRRD--- 1466 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + N PFG+ +DK + Sbjct: 1467 -------FYDLAIGNVPFGQYQVRDKAYDKLNFSIHNY--------------------FF 1499 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402 K GG A V + +S +RR+L + + ++ LP D F Sbjct: 1500 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAFKKNAG 1554 Query: 403 IATYLWILSNRKTEERRGKV 422 I+ +K + V Sbjct: 1555 AEVVSDIIFLQKRDRPLDIV 1574 >gi|209886780|ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5] gi|209874976|gb|ACI94772.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5] Length = 1700 Score = 44.2 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 64/249 (25%), Gaps = 58/249 (23%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 TP +V A + + +P GTG F + Sbjct: 169 AHFTPEFIVRSIW--------AALRRLGWRGGRVLEPGIGTGLFPALMPEEFRE------ 214 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + G EL+P T + I G ++ + F Sbjct: 215 ---VSYVTGVELDPATARIAR------------LLQPRARIITGD-FARAELP-RSFDLA 257 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPPF + + A F+ + L+ G Sbjct: 258 IGNPPFSDRTVRSDRAYRSMGLRLHDY---------------FIARAIDLLKP----GAL 298 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412 A V S + A R + + + A + LP F T++ L Sbjct: 299 ATFVTSHGTMDKADAA-----AREHIAKTADLIAAIRLPEGSFRAVAGTDVVVDLLFFRK 353 Query: 413 RKTEERRGK 421 RK + G Sbjct: 354 RKIGDPEGD 362 >gi|116255163|ref|YP_770997.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841] gi|115259811|emb|CAK02905.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841] Length = 1696 Score = 44.2 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 58/409 (14%), Positives = 105/409 (25%), Gaps = 71/409 (17%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S TP +V A + + +P GTG Sbjct: 154 DYASLARCTQYAHFTPELIVRAIW--------AGIQRLGWRGGRVLEPGIGTG------- 198 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + G EL+P T + I +G Sbjct: 199 --LFPALIPPEYRDTAYVTGIELDPVTARIVR------------LLQPRSRIIEGDFART 244 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 DL + + NPPF + + A F+ + Sbjct: 245 DLAP--IYDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY---------------FIARSID 287 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 L+ G AA V S L + R + + + A + LP F T Sbjct: 288 LLKP----GALAAFVTSHGTL-----DKAATTAREHIAKTADLIAAIRLPEGSFRRDAGT 338 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIYVSRE 460 ++ + RK E G ++ ++ ++ +EG R +L Sbjct: 339 DVVVDILFFRKRKAGEPEGDQIWLDVDEVRPAVDDEGAIRVNRWFARHPDFVLGT----- 393 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 L FG V R + + L AD+ + +P+ ++ + Sbjct: 394 -----HALTSGPFGETYTCVARDGADLDTILDAAIELLPADVYDGEPTPIDIDLEDELAE 448 Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI--NAFGRK 567 + + E + L A + + K Sbjct: 449 IVDLRPKDSPVREGSFFVDRAKGLMQMLDGTAVAVTVRKGRPGDGISEK 497 >gi|317056964|ref|YP_004105431.1| N-6 DNA methylase [Ruminococcus albus 7] gi|315449233|gb|ADU22797.1| N-6 DNA methylase [Ruminococcus albus 7] Length = 1070 Score = 44.2 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 66/200 (33%), Gaps = 25/200 (12%) Query: 98 NNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155 + +++ + + + I F D+D+ + R + I + ++ + Sbjct: 276 DEIKAILNGEHFSRQNIYNFVDYDYFGWLNRSPYVDI---IIPSVREMQNRLKAYDFSRL 332 Query: 156 SN--IYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L+ + ++ TP + ++ + + D Sbjct: 333 GDEDIFGRLLAQLANKEHRLMLGQEFTPHWIARDIVKYNINKIGDE-------VPHIMDM 385 Query: 213 TCGTGGFLTDAMNHVADCG----SHHKIPPILVPH----GQELEPETHAVCVAG--MLIR 262 CG+G FL +++N V + + + G +++P + M +R Sbjct: 386 CCGSGVFLIESINAVREKYSISSDKYDAKKDAIIFSAVMGFDIDPLAVMLAKVNWIMTMR 445 Query: 263 RLESDPRRDLSKNIQQGSTL 282 L ++ I +L Sbjct: 446 DLFPLHSGSITVPIYHADSL 465 >gi|307637150|gb|ADN79600.1| adenine specific DNA-methyltransferase [Helicobacter pylori 908] gi|325995741|gb|ADZ51146.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018] gi|325997337|gb|ADZ49545.1| adenine specific DNA methyltransferase [Helicobacter pylori 2017] Length = 442 Score = 44.2 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTTQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 T DP G+G F+ A+ + +G + + + + Sbjct: 136 -----TFCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAVTLTKKRI--- 178 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + R NI Q LS L +F +NPP+GKK+ +++ K Sbjct: 179 ---KERYRLDCPNIMQKDFLS--LKHAPQFDCIFTNPPWGKKYNQNQ-------KENFKQ 226 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 RF L + D + LF M N L+ + G Sbjct: 227 RFN--LSQSLDSASLFFMASLNCLKENAHLG 255 >gi|298674597|ref|YP_003726347.1| hypothetical protein Metev_0645 [Methanohalobium evestigatum Z-7303] gi|298287585|gb|ADI73551.1| conserved hypothetical protein [Methanohalobium evestigatum Z-7303] Length = 247 Score = 44.2 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 19/130 (14%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + I+ L ++ F TP ++ A + D + +P Sbjct: 118 DFLGTIFMEL-----ELPNKFGGQFFTPYELSKFAAQVTFSDYD----SDTDEVIEFNEP 168 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 G G F+ + + G + + + Q+ + + + + Sbjct: 169 AVGAGSFVIAVCEMLHEKGVNFQNRLKVTA--QDSDYMVFCMAYTQLSLIGC-------- 218 Query: 273 SKNIQQGSTL 282 + G+TL Sbjct: 219 PAQLVHGNTL 228 >gi|4426955|gb|AAD20627.1| DNA methylase homolog DarB' [enterobacteria phage P1] Length = 512 Score = 44.2 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 87/275 (31%), Gaps = 50/275 (18%) Query: 288 TGKRFHYCLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 F + + N PFG +E G F++ + +K Sbjct: 45 PNDSFDHVVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDK 88 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 ++ GG IV S +GS +R L LPT F +T Sbjct: 89 IKP---GGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTST 140 Query: 406 YL-WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 + +L + E K+ L++ + L ++ ++ E Sbjct: 141 VVDVVLMRKHPAEMAEKIPLVHESTLESA--------NVLWPTFISG-----KWFEKDGR 187 Query: 465 SRMLDYRTFGYR-RIKVLRPLRMSFILDKTGLAR-----LEADITWRKLSPLHQSFWLDI 518 + + G++ RI+V R +D L E+ I W L S D+ Sbjct: 188 RFVHGTQEKGFQGRIEV----RADGQIDNQALKAKLIHCFESRIDWYLLDMAEPSPTADV 243 Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + ++ W + I+S+ K LK+ + Sbjct: 244 VDEGEMRLINGVWQKYAGGRWIESDAGKELKIDVA 278 >gi|237740829|ref|ZP_04571310.1| superfamily II DNA and RNA helicase [Fusobacterium sp. 4_1_13] gi|229431213|gb|EEO41425.1| superfamily II DNA and RNA helicase [Fusobacterium sp. 4_1_13] Length = 790 Score = 44.2 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 71/256 (27%), Gaps = 59/256 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F TP+ V+ L G + +P+ G G F+ + Sbjct: 48 EEYTKARESTLTAFFTPKVVIDNIYKGL-----DNLGFKEGK---ILEPSSGIGNFIGNI 99 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + EL+ + + A NI Q Sbjct: 100 PEKME----------NSKFYSVELDSLSGRIEKA------------LYPQANI-QIDGFE 136 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F + N PFG DK+ + F Sbjct: 137 NIDFRNNFFDVAVGNVPFGDFKVNDKEYARNNFLIHDY----------------FFAKSI 180 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +K+ GG A + NG + IRR++ E + V LP + F Sbjct: 181 DKVRP----GGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 231 Query: 401 TNIATYLWILSNRKTE 416 T + + + L R+ + Sbjct: 232 TEVTSDIIFLKKREEK 247 >gi|325269958|ref|ZP_08136567.1| DNA methylase [Prevotella multiformis DSM 16608] gi|324987681|gb|EGC19655.1| DNA methylase [Prevotella multiformis DSM 16608] Length = 1954 Score = 44.2 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 79/265 (29%), Gaps = 55/265 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITGTIAEALHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ D +Q + K F Sbjct: 152 IMAFEK----------------DLMTGKILGHLHPDQKVRVQGFEKIEKPF--TDYFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +SN PFG D + E + R + + FL K GG Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSQDPARRSA---PKAIHNYFFL-----KSLDAVREGG 240 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILS 411 A + S L + IR +++ N + + LP +LF T + + L IL Sbjct: 241 IVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLIILQ 296 Query: 412 NRKTEERRGKVQLINATDLWTSIRN 436 ++R L + +L+ Sbjct: 297 KNSGKKRE----LYDYEELFVQTEK 317 >gi|325473763|gb|EGC76952.1| hypothetical protein HMPREF9353_02054 [Treponema denticola F0402] Length = 779 Score = 44.2 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 47/186 (25%) Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT------------ 188 + E V ++ I+E+L+ E ++ F TP+++V Sbjct: 400 TDPEDREVGVDPEMLGKIFENLL-----EDNKDKGAFYTPKEIVQYMCRESLIAYLSEET 454 Query: 189 -------ALLLDPDDALFKESPG-----MIRTLYDPTCGTGGFLTDAMNHV--------- 227 L+L+ D K+ + DP G+G F +N + Sbjct: 455 QDEPAMRNLVLNNDIQTIKDKKKVLSALKNIKICDPAVGSGAFPMGMLNELFACRILLEG 514 Query: 228 ----ADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQ 278 + S K +G ++E + + + + N I Q Sbjct: 515 DIADEENRSRIKKEIVRENIYGVDIEKGAVDIARLRFWLAIIVDEKIPLPLPNLDYKIMQ 574 Query: 279 GSTLSK 284 G++L + Sbjct: 575 GNSLLE 580 >gi|315640438|ref|ZP_07895548.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952] gi|315483798|gb|EFU74284.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952] Length = 1571 Score = 44.2 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 84/316 (26%), Gaps = 53/316 (16%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 +N E F+ LE LY+ + + + ++ +Y+ Sbjct: 798 ENIVKELEKAGFAKEQENLEP---LYESVRMRAEGVEKSEDKQKIII-TLYDKFFSTAFK 853 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-----IRTLYDPTCGTGGFLTDA 223 +E TP +VV + D + K G + DP GTG F+ Sbjct: 854 STTERLGIVFTPVEVVDFIVKSV----DDVLKIHFGKSLASENVHVLDPFTGTGTFIVRT 909 Query: 224 MNHVADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS--- 273 ++++ + KI H E+ ++ + + E + + Sbjct: 910 LSYLKEQMDEGKINLADITRKFTQELHANEIILLSYYIAAINIEATYDEINGTEEGYVPF 969 Query: 274 KNIQQGSTL---SKDLFTGKRF----------------HYCLSNPPFGKKWEKDKDAVEK 314 I T D + + NPP+ D + Sbjct: 970 DGIVLTDTFESTEDDKVIEDTYFITNDDRLKVQQKVPITAIIGNPPYSIGQSSVNDNNQN 1029 Query: 315 EHKNGELGRFGPGLPKISDGSM------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 + K S ++ ++ + G V + S + + Sbjct: 1030 LNYPKLNASIEMTYAKYSKANLKKAVYDSYIQAFRWSSDRIKELG-VIGFVSNGSFIDSQ 1088 Query: 369 RAGSGESEIRRWLLEN 384 R+ L E Sbjct: 1089 STDG----FRKVLFEE 1100 >gi|237741482|ref|ZP_04571963.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|229429130|gb|EEO39342.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] Length = 2036 Score = 44.2 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 66/293 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + F TP+ V+ D E + +P+C G F+ + Sbjct: 518 EYNKAMESTLTAFYTPKVVI--------DNIYTKLIEFGFKEGRILEPSCAVGNFIGNLP 569 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL+ + + + ++ Q + Sbjct: 570 KEL----------DSSQVYGVELDNISGNIAK-------------QLYPQSEIQVKGFEE 606 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F+ F + N PFG + +++E+ + L + Sbjct: 607 TNFSNNFFDIAIGNVPFG-----NFKILDREYDR---------------YNFLIHDYFFA 646 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A + SS L + +R++L E + V LP +F Sbjct: 647 KTIDKVKSGGIIAFITSSGTL-----DKKDKSVRKYLGERCELLGAVRLPNSVFKGVAGA 701 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453 + + + L R K+Q ++ + G K D I+ Sbjct: 702 EVTSDILFLKK------RDKIQELDNETWYEIAEDKNGIKYNKYFVDNPEMII 748 >gi|225376798|ref|ZP_03754019.1| hypothetical protein ROSEINA2194_02440 [Roseburia inulinivorans DSM 16841] gi|225211424|gb|EEG93778.1| hypothetical protein ROSEINA2194_02440 [Roseburia inulinivorans DSM 16841] Length = 1851 Score = 44.2 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 66/260 (25%), Gaps = 58/260 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + T V+ + + +P+CG G F Sbjct: 1388 EEYAAARGSTLNAHYTSPTVIRAIYETVG--------RMGFETGNILEPSCGVGNFFGML 1439 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+ + + ++D + I + Sbjct: 1440 PEEMR----------NSRLYGVELDSISGRIAKQ----LYPKADITVAGFETIDRRD--- 1482 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + N PFG+ +DK + Sbjct: 1483 -------FYDLAIGNVPFGQYQVRDKAYDKLNFSIHNY--------------------FF 1515 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402 K GG A V + +S +RR+L + + ++ LP D F Sbjct: 1516 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAFKKNAG 1570 Query: 403 IATYLWILSNRKTEERRGKV 422 I+ +K + V Sbjct: 1571 AEVVSDIIFLQKRDRPLDIV 1590 >gi|265755241|ref|ZP_06090011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234383|gb|EEZ19973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1946 Score = 44.2 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 76/255 (29%), Gaps = 52/255 (20%) Query: 164 RRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R+ + + F TP ++ L + + +P+ G G F+ Sbjct: 91 KRYADAMKQSVLTAFYTPPEITGTIAEALHEHGI--------RPDRVLEPSAGVGAFV-- 140 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + V + I ++ ++ D +Q + Sbjct: 141 --DAVLENKPDADIMAFEK----------------DLMTGKILGHLHPDQKVRVQGFEKI 182 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKISDGSMLFLMH 341 K F +SN PFG D + E + R + + FL Sbjct: 183 EKPF--TDYFDLAISNIPFG-----DVAVFDPEFTGSQDPARRSA---PKAIHNYFFL-- 230 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-- 399 K GG A + S L + IR +++ N + + LP +LF Sbjct: 231 ---KSLDAVREGGIVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDN 283 Query: 400 -RTNIATYLWILSNR 413 T + + L IL Sbjct: 284 AGTEVGSDLIILQKN 298 >gi|153939208|ref|YP_001390615.1| restriction endonuclease family protein [Clostridium botulinum F str. Langeland] gi|152935104|gb|ABS40602.1| restriction endonuclease family protein [Clostridium botulinum F str. Langeland] gi|295318693|gb|ADF99070.1| restriction endonuclease family protein [Clostridium botulinum F str. 230613] Length = 741 Score = 44.2 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 19/158 (12%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135 F N + L ++ N + YI + + DF L L K Sbjct: 92 LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I +G + + + IYE +I E + F TP ++ + Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F L D + G G F+ A + + + Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE 232 >gi|1942354|pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi gi|1942355|pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi gi|1942410|pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi gi|1942411|pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi Length = 421 Score = 44.2 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + TP +VV +L P + +P C G FL Sbjct: 6 LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 G E++P+ + ++ I Sbjct: 56 AFREA---------HGTGYRFVGVEIDPKALDL---------------PPWAEGILADFL 91 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339 L + G+ F L NPP+G E K + K + ++ FL Sbjct: 92 LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365 L+ GG V+ ++ L Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169 >gi|1942356|pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi gi|1942357|pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi gi|155127|gb|AAA27506.1| methylase [Thermus aquaticus] Length = 421 Score = 44.2 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + TP +VV +L P + +P C G FL Sbjct: 6 LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 G E++P+ + ++ I Sbjct: 56 AFREA---------HGTGYRFVGVEIDPKALDL---------------PPWAEGILADFL 91 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339 L + G+ F L NPP+G E K + K + ++ FL Sbjct: 92 LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365 L+ GG V+ ++ L Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169 >gi|322805588|emb|CBZ03153.1| bpmi endonuclease-methyltransferase fusion protein type IIG [Clostridium botulinum H04402 065] Length = 741 Score = 44.2 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 20/172 (11%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135 F N + L ++ N + YI + + DF L L K Sbjct: 92 LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I +G + + + IYE +I E + F TP ++ + Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 F L D + G G F+ A + + + I + + Q + Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE-NIQNLQEKYKQNI 245 >gi|229488227|gb|ACQ73747.1| M.SdaI [Streptomyces diastaticus] Length = 486 Score = 44.2 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 34/227 (14%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + F TP L ++L D + DP G G Sbjct: 15 LGKLDPRTQAVLGQFFTPVKAATLMASMLRVDD-------LSGSVRVLDPGAGAGSLSAA 67 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 ++ + + + V + P A + D +G L Sbjct: 68 LVDRLHTERPDVAVHVVAVETDPFITPYLRATLEECQTAYGISYDL--------VEGDYL 119 Query: 283 SKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 + F + ++NPP+GK + + + + + F Sbjct: 120 LDEGAELDGPFDFVIANPPYGKLASDSPTRLATATRAVDTP----------NVYVAFWAR 169 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 L+ G ++ P + RRWLL ++ Sbjct: 170 AVASLKKDGQGAFIVPRSWANGPYYRS--------FRRWLLSTASLD 208 >gi|218296315|ref|ZP_03497071.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I [Thermus aquaticus Y51MC23] gi|218243387|gb|EED09917.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I [Thermus aquaticus Y51MC23] Length = 421 Score = 44.2 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + TP +VV +L P + +P C G FL Sbjct: 6 LLSLPSNAAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 G E++P+ + ++ I Sbjct: 56 AFREA---------HGTAYRFVGVEIDPKALDL---------------PPWAEGILADFL 91 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339 L + G+ F L NPP+G E K + K + ++ FL Sbjct: 92 LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365 L+ GG V+ ++ L Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169 >gi|288594|emb|CAA68551.1| methylase [Thermus aquaticus] Length = 363 Score = 44.2 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + TP +VV +L P + +P C G FL Sbjct: 6 LLSLPSNAAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 G E++P+ + ++ I Sbjct: 56 AFREA---------HGTAYRFVGVEIDPKALDL---------------PPWAEGILADFL 91 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339 L + G+ F L NPP+G E K + K + ++ FL Sbjct: 92 LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365 L+ GG V+ ++ L Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169 >gi|169830597|ref|YP_001716579.1| hypothetical protein Daud_0394 [Candidatus Desulforudis audaxviator MP104C] gi|169637441|gb|ACA58947.1| hypothetical protein Daud_0394 [Candidatus Desulforudis audaxviator MP104C] Length = 1581 Score = 44.2 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 48/188 (25%), Gaps = 51/188 (27%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV- 227 +G F TP +V L P + + DP CG+ FL +AM + Sbjct: 524 SARKGTGSFYTPLPLVRDLVYHALGPLAEGKSPAEIESLRVLDPACGSAHFLVEAMRFLG 583 Query: 228 --------------------------------------ADCGSHHKIPPILV-----PHG 244 S + G Sbjct: 584 RELHRAYAEGYGAKGPPQFRSTTGQRWDSDWQVSDEEARATNSEARAWCKRRIAERCLFG 643 Query: 245 QELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 +L P + + I L D P +++ G++L L +PP Sbjct: 644 VDLNPTAVNLARVALWIESLAGDRPLTYFEHHVRCGNSLLGTWLKR------LDDPPLPS 697 Query: 304 KWEKDKDA 311 ++ + Sbjct: 698 MEKRQPNG 705 >gi|332299075|ref|YP_004440997.1| type IIS restriction endonuclease, [Treponema brennaborense DSM 12168] gi|332182178|gb|AEE17866.1| type IIS restriction endonuclease, putative [Treponema brennaborense DSM 12168] Length = 1124 Score = 44.2 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 51/213 (23%) Query: 151 PDRVMSNIYEHLIRRFG----SEVSEGAEDFMTPRDVVHLATALLLDP------------ 194 ++ ++E+L+ + + + F TPR++V+ + L+ Sbjct: 393 DPELLGKVFENLLGTYNPETKETARKDSGSFYTPREIVNYMVKISLEKYLQQKISSLKQE 452 Query: 195 ---------------DDALFKESPGMIRTLYDPTCGTG----GFLTDAMNHVADCGSHHK 235 DD+ + M ++DP CG+G G L + + S Sbjct: 453 EAELLFSSDETNAPFDDSEKLTNCLMNVKVFDPACGSGAFPMGILQALVLAIKKLNSDKY 512 Query: 236 IPPI-----------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +G +++ + I + + + + N Sbjct: 513 KTNKDLYNLKLHLIENCIYGSDIQSIAIQIAKLRFFISLICEQDKTEDANN-----NYGF 567 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 D + +N G K +++ + + + Sbjct: 568 DPLPNLETKFVSANSLIGIKKAENQGNLFENPE 600 >gi|294501530|ref|YP_003565230.1| hypothetical protein BMQ_4794 [Bacillus megaterium QM B1551] gi|294351467|gb|ADE71796.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 330 Score = 44.2 bits (103), Expect = 0.076, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 99/312 (31%), Gaps = 51/312 (16%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 Y+ + ++ + +F+ + + K L K + + D + Y+ Sbjct: 29 YLEAVAETGENLFQGTILQEELDEVTK-KRLKKEYDSIT-----LDHFEKETIRKAYQLA 82 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + E + MTP V + L+ + TL DP G G LT Sbjct: 83 ILKGMKEAVQPNHQ-MTPDAVGLFVSYLV------GKFMAGKDKYTLLDPAVGAGNLLTT 135 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + +G +++ + N +L Sbjct: 136 ---ILNTHAASIE-----HVYGVDVDDLLLQLTYVN-----ANLQKHGVQLFN---QDSL 179 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + LF + + P G E R G LF+ Sbjct: 180 -QPLFID-PVDLVVCDLPVGY-------YPNDEGAKEYKVRAEEGHT---YAHHLFIEQS 227 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRT 401 L+ GG A++ ++ LF S +S + + LL E +++ IV LP +F + Sbjct: 228 LRHLKD---GGYVVALIPNN--LF----ESEQSHLLQPLLKEEAIVQGIVQLPLSMFKQE 278 Query: 402 NIATYLWILSNR 413 A + IL + Sbjct: 279 QAAKSIIILQKQ 290 >gi|312863499|ref|ZP_07723737.1| N-6 DNA Methylase [Streptococcus vestibularis F0396] gi|311101035|gb|EFQ59240.1| N-6 DNA Methylase [Streptococcus vestibularis F0396] Length = 1331 Score = 44.2 bits (103), Expect = 0.077, Method: Composition-based stats. Identities = 50/390 (12%), Positives = 102/390 (26%), Gaps = 76/390 (19%) Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 ++ A ++ E F+ L+ TR+ +E+ + + + + Sbjct: 563 KQEEALSEDELEPEVTETPPATDFHFPE--DLTDFYPKTTRDKVETNV----AAVR-LVK 615 Query: 117 DFDFSSTIARLEKAGLLYKIC-------KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + A + LL K + F + + + + E + + Sbjct: 616 SLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREELKTLVTE---KEYSDM 672 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + T ++ + + DP+ GTG F H+ + Sbjct: 673 KQSSLTAYYTDPLLIREMWN--------KLERDGFTGGRVLDPSMGTGNFFAAMPKHLRE 724 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 +G EL+ T A+ + +I+ F Sbjct: 725 NSE---------LYGIELDTITGAIAK------------HLHPNSHIEV-KGFETIAFND 762 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F LSN PF + R+ D + + K Sbjct: 763 NSFDLVLSNVPFA-------------NIRIADSRY--------DKPYMIHDYFVKKSLDL 801 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406 + GG+ A++ G I + + E V LP F TN+ T Sbjct: 802 VHDGGQVAMI-----SSTGTMDKRTENILQDIRETADFLGGVRLPDSAFNAIAGTNVTTD 856 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN 436 + + + + + Sbjct: 857 MLFFQKHMDKGYVADDLAFSGSIRYDKDDR 886 >gi|134288527|ref|YP_001110690.1| hypothetical protein Bcep1808_7001 [Burkholderia vietnamiensis G4] gi|134133177|gb|ABO59887.1| hypothetical protein Bcep1808_7001 [Burkholderia vietnamiensis G4] Length = 214 Score = 44.2 bits (103), Expect = 0.077, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 38/138 (27%), Gaps = 16/138 (11%) Query: 153 RVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 ++ +Y+ L + F +P + L + G + D Sbjct: 48 DILGPLYQEL----ACHGGKQLLGQFFSPWPLAALMATITEP---WSSDIDAGRLAVACD 100 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDP 268 P CG+G + + + + G +++ +C M + Sbjct: 101 PACGSGVMMLATAHTILNAQGPA-ALKSWSFVGCDIDG----ICARMMAIQFLANCAVHR 155 Query: 269 RRDLSKNIQQGSTLSKDL 286 + G +L D Sbjct: 156 IEVGEVIVFCGDSLRVDQ 173 >gi|307566488|ref|ZP_07628919.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307344799|gb|EFN90205.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 1507 Score = 44.2 bits (103), Expect = 0.077, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ IR DP+ G G T+ + + Q + P Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMG-AFTETFAKRTGMVDAMEKDLLTTRISQAIHPY 169 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 +++R+ + +L ++ SN PFG D+ Sbjct: 170 ----GKGNIIVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDFMVYDRS 211 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 + E+ + F+ K GG A + S L + + Sbjct: 212 YSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGVLDSPKN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 260 E----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|260497888|ref|ZP_05816007.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33] gi|260196554|gb|EEW94082.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33] Length = 2036 Score = 44.2 bits (103), Expect = 0.077, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 66/293 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + F TP+ V+ D E + +P+C G F+ + Sbjct: 518 EYNKAMESTLTAFYTPKVVI--------DNIYTKLIEFGFKEGRILEPSCAVGNFIGNLP 569 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + +G EL+ + + + ++ Q + Sbjct: 570 KEL----------DSSQVYGVELDNISGNIAK-------------QLYPQSEIQVKGFEE 606 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F+ F + N PFG + +++E+ + L + Sbjct: 607 TNFSNNFFDIAIGNVPFG-----NFKILDREYDR---------------YNFLIHDYFFA 646 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A + SS L + +R++L E + V LP +F Sbjct: 647 KTIDKVKSGGIIAFITSSGTL-----DKKDKSVRKYLGERCELLGAVRLPNSVFKGVAGA 701 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453 + + + L R K+Q ++ + G K D I+ Sbjct: 702 EVTSDILFLKK------RDKIQELDNETWYEIAEDKNGIKYNKYFVDNPEMII 748 >gi|258545501|ref|ZP_05705735.1| methylase [Cardiobacterium hominis ATCC 15826] gi|258519201|gb|EEV88060.1| methylase [Cardiobacterium hominis ATCC 15826] Length = 933 Score = 44.2 bits (103), Expect = 0.078, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 33/148 (22%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHH----------------KIPPILVPHGQELEPET 251 DP CG G FL A + + I HG EL+ Sbjct: 367 RFLDPACGCGNFLVVAYRELRRLEDEIIGELYGENQLLDIATMQRVHIGQFHGIELDEYP 426 Query: 252 HAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + M + + + S I + L+ + + Y N Sbjct: 427 AQIAKVAMWLTDHQCNLATAARFGETRPTIPLADSAEIINANALTTEW---PQADYIFGN 483 Query: 299 PPF-GKKWEKDKDAVEKEHKNGELGRFG 325 PPF G +W + E + G+FG Sbjct: 484 PPFIGHQWRSTAQQADVEAVFPKNGKFG 511 >gi|116242665|sp|P14385|MTTA_THEAQ RecName: Full=Modification methylase TaqI; Short=M.TaqI; AltName: Full=Adenine-specific methyltransferase TaqI gi|149242148|pdb|2IBS|A Chain A, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At The Target Position gi|149242149|pdb|2IBS|D Chain D, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At The Target Position gi|149242156|pdb|2IBT|A Chain A, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At The Target Position And An Abasic Site Analog At The Target Base Partner Position gi|149242157|pdb|2IBT|D Chain D, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At The Target Position And An Abasic Site Analog At The Target Base Partner Position gi|157835261|pdb|2JG3|A Chain A, Mtaqi With Baz gi|157835264|pdb|2JG3|D Chain D, Mtaqi With Baz gi|160285562|pdb|2IH2|A Chain A, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing 5-Methylpyrimidin- 2(1h)-One At The Target Base Partner Position gi|160285565|pdb|2IH2|D Chain D, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing 5-Methylpyrimidin- 2(1h)-One At The Target Base Partner Position gi|160285571|pdb|2IH4|A Chain A, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The Target Base Partner Position gi|160285574|pdb|2IH4|D Chain D, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The Target Base Partner Position gi|160285579|pdb|2IH5|A Chain A, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing An Abasic Site Analog At The Target Base Partner Position gi|160285650|pdb|2NP6|A Chain A, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing An Abasic Site Analog At The Target Position gi|160285653|pdb|2NP6|D Chain D, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing An Abasic Site Analog At The Target Position gi|160285658|pdb|2NP7|A Chain A, Crystal Structure Of The Adenine-Specific Dna Methyltransferase M.Taqi Complexed With The Cofactor Analog Aeta And A 10 Bp Dna Containing An Abasic Site Analog At The Target Position And Pyrrolo-Dc At The Target Base Partner Position Length = 421 Score = 44.2 bits (103), Expect = 0.079, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 L+ + TP +VV +L P + +P C G FL Sbjct: 6 LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 G E++P+ + ++ I Sbjct: 56 AFREA---------HGTAYRFVGVEIDPKALDL---------------PPWAEGILADFL 91 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339 L + G+ F L NPP+G E K + K + ++ FL Sbjct: 92 LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365 L+ GG V+ ++ L Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169 >gi|46401635|ref|YP_006479.1| DarB [Enterobacteria phage P1] gi|33338662|gb|AAQ13985.1| DarB [Enterobacteria phage P1] gi|33338771|gb|AAQ14093.1| DarB [Enterobacteria phage P1] Length = 2255 Score = 44.2 bits (103), Expect = 0.079, Method: Composition-based stats. Identities = 62/388 (15%), Positives = 117/388 (30%), Gaps = 82/388 (21%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 ++ TP+ + ++ + +P+ GTG F + Sbjct: 89 SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P V E+ + + L+ + S I L+ F + Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176 Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 + N PFG +E G F++ + +K++ G Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217 Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411 G IV S +GS +R L LPT F +T + +L Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272 Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471 + E K+ L++ + L ++ ++ E + + Sbjct: 273 RKHPAEMAEKIPLVHESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319 Query: 472 TFGYR-RIKVLRPLRMSFILDKTGLAR-----LEADITWRKLSPLHQSFWLDILKPMMQQ 525 G++ RI+V R +D L E+ I W L S D++ + Sbjct: 320 EKGFQGRIEV----RADGQIDNQALKAKLIHCFESRIDWYLLDMAEPSPTADVVDEGEMR 375 Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKAS 553 + W + I+S+ K LK+ + Sbjct: 376 LINGVWQKYAGGRWIESDAGKELKIDVA 403 >gi|90968656|gb|ABE02417.1| BsrGI methyltransferase [Geobacillus stearothermophilus] Length = 648 Score = 44.2 bits (103), Expect = 0.080, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 63/203 (31%), Gaps = 19/203 (9%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 F+ + + ++ L + + + +YE +I R ++ ++ Sbjct: 169 FNLLQELNKFDEINNLQEFISI----------HNNDNIKQMYEIIIPR---QLRHALGEY 215 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 TP LA + + + KE +T DPTCG+G FL + + Sbjct: 216 YTPD---WLALYTIENVIELSKKEVEEFNKTYLDPTCGSGTFLFKTIQRLRKSDIKLNK- 271 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLES--DPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I G ++ P LI ++ D S L K Sbjct: 272 IIYSVRGFDVNPIAVLTAKTNYLISIIDLIKDKTVINLPVYNYDVINSPILKENKLLSVD 331 Query: 296 LSNPPFGKKWEKDKDAVEKEHKN 318 ++N + KD K K Sbjct: 332 INNVIYNIPLSILKDEHFKTFKK 354 >gi|14669432|gb|AAK71920.1|AF097471_1 endonuclease and methylase LlaGI [Lactococcus lactis] Length = 1570 Score = 44.2 bits (103), Expect = 0.082, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 85/309 (27%), Gaps = 51/309 (16%) Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 E F+ LE LY+ + +++ +Y+ + +E Sbjct: 809 LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 864 Query: 175 EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232 TP +VV + D F K + DP GTG F+ + ++ + Sbjct: 865 GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDA 924 Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQ----- 278 + H E+ ++ + + E + + + I Sbjct: 925 GEISLSDITRKFMKELHANEIVLLSYYIAAINIEATFDEINGEEEGYVPFEGIVLTDTFE 984 Query: 279 ----GSTLSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 TL D F + NPP+ K + +KN E R Sbjct: 985 STETEETLDDDYFGTNDERLKRQQEVPITAIIGNPPYSKGQSNE----NDNNKNIEYPRL 1040 Query: 325 GPGLPKI----SD-----GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + S G + N G V + S + + A Sbjct: 1041 FKSIADSYVKNSKTTSVLGMYDSYVLSIRWASNRLNDKGVIGFVSNGSYIDSQSADG--- 1097 Query: 376 EIRRWLLEN 384 +R+ L + Sbjct: 1098 -LRKSLFKE 1105 >gi|91203429|emb|CAJ71082.1| similar to type IIS restriction/modification enzyme; site-specific DNA methyltransferase (adenine specific) [Candidatus Kuenenia stuttgartiensis] Length = 1268 Score = 44.2 bits (103), Expect = 0.083, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 28/211 (13%) Query: 89 STLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLE----------KAGLLYK 135 L R + I SFSD N + ++ F+ ++ +Y Sbjct: 405 KELDDDGKRKRIR--IDSFSDREDNVLEVPDELFFNEKGVDVDLSRIYSSSKKNKEKVYG 462 Query: 136 ICK-----NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSE----VSEGAEDFMTPRD 182 I F+ E P ++ ++E+L+ + E + F TPR+ Sbjct: 463 IIDILNSYKFTVAENTPIEEEIALDPELLGKVFENLLANYNPETQTTARKQTGSFYTPRE 522 Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +V+ L S + + + G + + + Sbjct: 523 IVNYMVDESLLAYLKQSLSSCHDVPSRSSVSAGHSVPFCHSERSEESNNTDKNEERLRDL 582 Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 P AG+L++ +++ D + Sbjct: 583 LSYSENPNPFNTEEAGVLVKAIDTCKILDPA 613 >gi|83956395|ref|ZP_00964819.1| adenine specific DNA methyltransferase [Sulfitobacter sp. NAS-14.1] gi|83839389|gb|EAP78573.1| adenine specific DNA methyltransferase [Sulfitobacter sp. NAS-14.1] Length = 1046 Score = 43.8 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 93/307 (30%), Gaps = 79/307 (25%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------- 208 YE + + + + TP VV+ + + F + G+ T Sbjct: 300 YETFLAAYNPAKRKARGVWYTPESVVNFIVRAVDEVLQTEFGLADGLADTSKVVIDWETG 359 Query: 209 -------------------LYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPIL 240 + DP GTG FL + + + A + + I Sbjct: 360 EFNKKGKPVTIKKEVHRVQILDPATGTGTFLAEVIKQIAPRVQDIAPAMWSKYIEDDLIP 419 Query: 241 VPHGQELEPETHAVCVA--GMLIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHY--- 294 HG EL ++A+C M++ L P + + ++ ++L + + + Sbjct: 420 RLHGFELLMASYAMCHMKLDMILTELGYKPAKAPPRLSVYLTNSLEEGEPANQTLPFTQW 479 Query: 295 -------------------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + NPP+ + ++ + R G+P G Sbjct: 480 LSREAKGANTIKRDMPIMCVVGNPPYSIMSG---NLTAEQVSLVDAYRSVDGVPIKEKGM 536 Query: 336 MLFLMHL---------ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 + F ++ ++ + NG G + S L S +R LLE Sbjct: 537 LQFEKNINNDYIKFLSLSERLISSNGFGVLGFITSHGYL----KSSSFRGLRAHLLETFH 592 Query: 387 IEAIVAL 393 ++ L Sbjct: 593 DVRVIDL 599 >gi|291337005|gb|ADD96528.1| hypothetical protein [uncultured organism MedDCM-OCT-S11-C29] Length = 3493 Score = 43.8 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 71/253 (28%), Gaps = 59/253 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + T +V+ ++ + +P G G F Sbjct: 991 EEYRRASGSILNAHYTSDEVIGEMWE--------GIRKLGFSGGRVLEPGAGVGHFFGLM 1042 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N +A G EL+ + + L + + + NI + S Sbjct: 1043 PNDLA---------GKSHLTGVELDSISGRILAK--LYPQAKIHQKGFEKANIAKAS--- 1088 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + N PF + DK PK S + FL Sbjct: 1089 --------MDLIVGNVPFHQDGPIDK-----------------AYPKASLHNYYFL-RGI 1122 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 + L+ GG + S S + N + + R WL E + + LP D F Sbjct: 1123 DLLKP----GGLMVAITSDSTMDNDVS----KKSREWLAERADMVGAIRLPNDAFAKNAN 1174 Query: 401 TNIATYLWILSNR 413 T + T + I + Sbjct: 1175 TQVTTDILIFRKK 1187 >gi|254487192|ref|ZP_05100397.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101] gi|214044061|gb|EEB84699.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101] Length = 553 Score = 43.8 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 77/247 (31%), Gaps = 43/247 (17%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R F S + F T + + L + T+ +P+ G GFL Sbjct: 1 MRTFDSRRKKDLGAFYTHQGLTDLIC---------AWSVQTPET-TVLEPSFGGCGFLRS 50 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + +A GS I +G +++ + + + + +G L Sbjct: 51 TRDRLAKIGSTSSISQ---IYGCDIDTRAF--------LLLSDVFEQPVDLERYHEGDFL 99 Query: 283 --SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 K F + NPP+ + + GL S+ Sbjct: 100 DQRFPSSWPKTFDAVVGNPPY----LPYRKIDVSRRERVLDQLKDLGLTLDRRASL--WA 153 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNG--------------RAGSGESEIRRWLLENDL 386 + + GGRAA VL SS L+ + E + R++LLE Sbjct: 154 YFVALSIPFTSTGGRAAWVLPSSFLYANFSAALRSFITENFEEVRAFELKERQFLLEGTE 213 Query: 387 IEAIVAL 393 + +V L Sbjct: 214 EKTVVLL 220 >gi|57506000|ref|ZP_00371924.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195] gi|57015800|gb|EAL52590.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195] Length = 1969 Score = 43.8 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 74/509 (14%), Positives = 136/509 (26%), Gaps = 91/509 (17%) Query: 50 PTRSAVREKYLAFG---GSNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRN 98 T+ E+ F G I ++ + FY T + L + L + Sbjct: 70 ETKQKSFEQKSNFELTMGYGISNDNKNLLPKIDFYKTQSFDLGGAKTRAENNLKALELAL 129 Query: 99 NLESYIASFSDNAKAIFEDF----DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154 + + + I + +S + L + S +L Sbjct: 130 TITKQNRYATQEEQEILAKYSGFGGLNSAFKDADFNTRLKTLLDENSSHKLESAET---- 185 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214 + +S + T L + + ++ + + +P+C Sbjct: 186 -----------YARLLSSSYNAYYT----NDLIIDTIYQGLEQFGLKNTSFKKEILEPSC 230 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 G+G FL H G ELE + + +L Sbjct: 231 GSGNFL------------HRGDKSSYNFTGVELEKHSAIIA--NLL------------HP 264 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 N + + ++ K+F + NPPFG+ KD +++ Sbjct: 265 NSKIINQSYENFAENKKFDAIIGNPPFGQDKVKDSNSLAHNQTLDNY------------- 311 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE--SEIRRWLLENDLIEAIVA 392 F + L+ G A V+ + L N + + R L V Sbjct: 312 ---FAIKSLENLKDK----GILAFVMPTGFLDNNQDKHLDLIKSARGKFL------GAVR 358 Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 LP +F I+ +K E K L N E N ++I Sbjct: 359 LPNSVFKENGTEVNTDIIFLQKEPEFIEK--LENGKLKKVKNEIESMPYVTYNATLNQEI 416 Query: 453 LDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511 ++Y E D +F + P + + + Sbjct: 417 QNLYDREEKNINVDKTDFISSFKISSYFIDNPQNILGKQVIEKNQFGDYKAVVKDDGRDL 476 Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESI 540 + +K + Q IY Y E K Sbjct: 477 AVALQNFVKTLPQNIYEYRPNEQKEKLRF 505 >gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocardia farcinica IFM 10152] gi|54019339|dbj|BAD60707.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 1653 Score = 43.8 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 59/240 (24%), Gaps = 30/240 (12%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDP 212 V++ +YE R + SE TP +VV F + DP Sbjct: 866 VIAELYEKFFRLGFRKQSEALGIVYTPVEVVDFILHAADQASRDAFGRGLTDQDVHILDP 925 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG FLT + H E+ + + + I E+ Sbjct: 926 FTGTGTFLTRLLQSGLITPKDLARKYAGELHANEIMLLAYYIAAVNIETTYHAILGKEAA 985 Query: 268 PRRDLSKNIQQGSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKD 308 + I T + D F + + NPP+ Sbjct: 986 AEYSPFEGIVLADTFQITENGDSLDSMIFPQNNERITRQNATPINVVIGNPPYSVGQTSA 1045 Query: 309 KDAVEKEHKNGELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSS 363 D R S + + L+ + G A V + Sbjct: 1046 NDLNANISYPTLDARIADTYAARSTGTNKNSLYDSYLRAFRWATDRIGNKGIVAFVSNGG 1105 >gi|170757225|ref|YP_001780890.1| restriction endonuclease family protein [Clostridium botulinum B1 str. Okra] gi|169122437|gb|ACA46273.1| restriction endonuclease family protein [Clostridium botulinum B1 str. Okra] Length = 741 Score = 43.8 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 20/172 (11%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135 F N + L ++ N + YI + + DF L L K Sbjct: 92 LVFNNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I +G + + + IYE +I E + F TP ++ + Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 F L D + G G F+ A + + + I + + Q + Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE-NIQNLQEKYKQNI 245 >gi|311741041|ref|ZP_07714866.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303843|gb|EFQ79921.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 944 Score = 43.8 bits (102), Expect = 0.090, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 45/183 (24%), Gaps = 41/183 (22%) Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------- 233 L + DP CG+G FL A + + Sbjct: 367 RLIASRSTTVKALREFRDSLADYAFLDPACGSGNFLIVAYRELRKIETDLIVAIRRKEGT 426 Query: 234 ----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL----------- 272 + I +G E+ + M + +++ Sbjct: 427 LDDMALDVSFEQKLSIGQFYGIEVNWWPARIAETAMFLVDHQANKELAQRIGAAPERLPI 486 Query: 273 --SKNIQQGSTLSKDL----FTGKRFHYCLSNPPFG---KKWEKDKDAVEKEHKNGELGR 323 + +I + L+ D K NPPF K + K+ +++ G Sbjct: 487 SITAHIHHANALAVDWSLVVPEPKGETLVFGNPPFIGQYTKTKGQKEDMKRVWGKDYDGY 546 Query: 324 FGP 326 Sbjct: 547 LDY 549 >gi|325857461|ref|ZP_08172516.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A] gi|325483171|gb|EGC86151.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A] Length = 489 Score = 43.8 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 47/300 (15%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + F T + ++ + L D G+G Sbjct: 16 FVSSNAKADRKKYGQFFTSESIAVFMASMFHIDLEKDSL-------RLLDAGAGSGILSV 68 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 ++ + + G + + + +++ +L + L S + I+ + Sbjct: 69 ALLSRIREIGYTGSVKLVCYENDEKVLG---------VLAKNLASVKDSHFTFEIRHENY 119 Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 ++ F G+ + + NPP+ K + DA+ + G P Sbjct: 120 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHMKEVC-------YGAP-- 170 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-- 389 + LF + L N GG V+ S + A + R++LL + I Sbjct: 171 -NLYFLFWAMGIHNL----NEGGELVYVIPRS--WTSGAY--FARFRKYLLSHCAITDIH 221 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQ 448 I +F + I+ RK R K+++ ++ T + +R + D Sbjct: 222 IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIRISSSDTSDFLDLRRFDVDYNTVVADN 281 >gi|257470287|ref|ZP_05634378.1| putative site-specific DNA-methyltransferase restriction-modification protein [Fusobacterium ulcerans ATCC 49185] gi|317064498|ref|ZP_07928983.1| adenine-specific DNA methylase [Fusobacterium ulcerans ATCC 49185] gi|313690174|gb|EFS27009.1| adenine-specific DNA methylase [Fusobacterium ulcerans ATCC 49185] Length = 477 Score = 43.8 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 39/269 (14%) Query: 206 IRTLYDPTCGTGGFL-TDAMNHVADCGS-----HHKIPPILVPHGQELEPETHAVCVAGM 259 + + + +CG G L ++ K +G EL+ E ++ C+ + Sbjct: 37 GKKILENSCGDGEILKVIVNKYINSLLKMKTLDEIKFGLENDIYGIELDKEHYSTCLKNL 96 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + + + N + + + K+F Y + NPP+ ++ D + KE K Sbjct: 97 ---DMIAGTYGIRNVNWKVFNENALKKEWDKKFDYIIGNPPY-ISYKDINDTIRKELKEK 152 Query: 320 E----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 G+F F+ N L G+ ++ +S N GE Sbjct: 153 YTSCKKGKFDYY--------YAFIEESLNCLSSF----GKFVYLIPNSIFKN---EFGE- 196 Query: 376 EIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434 E+R+ +L + + IV + +F + + + I RK ++ N + Sbjct: 197 ELRKIILPS--LSKIVDYKSHKIFKNVSTTSAILICDKRKKKKSMLYFDYENKNQIKILK 254 Query: 435 RNEGKK------RRIINDDQRRQILDIYV 457 N KK + + D ++ D + Sbjct: 255 ENLNKKWIFVEEKNDLLKDNLKKFGDYFK 283 >gi|227524365|ref|ZP_03954414.1| adenine-specific methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088596|gb|EEI23908.1| adenine-specific methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 356 Score = 43.8 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 48/336 (14%), Positives = 96/336 (28%), Gaps = 51/336 (15%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 F++ + + ++ +S I + D ++ E A + +I Sbjct: 29 ERFFSVLNETTEIVQKQKDQSYFDSLIE-----VLDTVQSNDVNALDLTDENAKKVSRIY 83 Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 F D + + I + V ++ D + ++ Sbjct: 84 SKFDR-----DKYDSETLRKAIQMAILK-AIRVDRIQANYQITPDTIANIVGYIISGIFN 137 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 K ++ DP GTG LT N + I G E + + Sbjct: 138 GQKR-----LSMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIENDDAMFELAAG 187 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 I+ + ++ + E+ Sbjct: 188 SFDIQHIHAELF-----------------HEDAIQNVLAPVVDIAVSDLPVGYYPIDENT 230 Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G R +DG S + + + ++ GG L S +F S + Sbjct: 231 KGFNTR-------SNDGHSYVHHLLIEFAMDHVKKGG--YGFFLVPSQIF---KTSEAKQ 278 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 + +W+ N ++A++ LPT+LF + IL N Sbjct: 279 LLKWMQGNVYLQALLNLPTELFQNKASQKAIMILQN 314 >gi|38640013|ref|NP_943968.1| hypothetical protein Aeh1p090 [Aeromonas phage Aeh1] gi|33414702|gb|AAQ17745.1| hypothetical protein Aeh1ORF084c [Aeromonas phage Aeh1] Length = 415 Score = 43.8 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 69/196 (35%), Gaps = 25/196 (12%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN--IYEHLIRRFGSEV 170 +FE FD L+ + ++ +++ +V+ + ++ I R + Sbjct: 242 ELFEKFDM------LDIRPRVQEVIEDY----YGGKRHKTQVVGDTRLFTDKIER---DR 288 Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + +F TP ++V+ D T ++P+CG G L + + + Sbjct: 289 QKKTAEFFTPIELVNQMLDYTDIDDANSSS-------TFFEPSCGDGNILEGIVKRMLEA 341 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG 289 G + + + + L++ L + R + I +TL + D G Sbjct: 342 GQNAGTIVSRIYACEYMLDN--RNAAIERLVKLLGEEYRTRIESQIAYCNTLDETDTSDG 399 Query: 290 KRFHYCLSNPPFGKKW 305 +++ L + + Sbjct: 400 RKYPDWLKDTMWTLDI 415 >gi|34762209|ref|ZP_00143216.1| Type I restriction-modification system methyltransferase subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888170|gb|EAA25229.1| Type I restriction-modification system methyltransferase subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 247 Score = 43.8 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 59/217 (27%), Gaps = 31/217 (14%) Query: 47 ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 E + + +K E F+ FY + + + +G ++ + + Sbjct: 19 VREASIKNIVKKIQDLDHKYNYDEIFLDWVRCMFYTYAN-TCNKVGYSDREEKFKRIVDK 77 Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166 +F + + + + + + IY L Sbjct: 78 HGKEVIEVF---------------------LECHAELVMLFEKEIYDYLGKIYHEL---- 112 Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 ++ F TP + L ++ + + D CG+G + + Sbjct: 113 -GIHNKMKGQFFTPFHLSKLMAETRVNELIKELNSKKRI--KITDAACGSGCLMLGILAV 169 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 + + + + +L+ T + + I Sbjct: 170 LKE--KGINYQKRIFINCSDLDENTIQMAYVQLTIVG 204 >gi|239624277|ref|ZP_04667308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520663|gb|EEQ60529.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 2585 Score = 43.8 bits (102), Expect = 0.097, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 69/265 (26%), Gaps = 68/265 (25%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + T V+ + I + +P+CG G F Sbjct: 1361 EEYAAARGSTLNAHYTSPTVIRAIYETVG--------RMGFEIGNILEPSCGVGNFFGML 1412 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278 + +G EL+ + + A + + E+ RRD Sbjct: 1413 PEEMR----------NSRLYGVELDSISGRIAKQLYPKADITVAGFETTDRRDF------ 1456 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + + N PFG+ +DK + Sbjct: 1457 -------------YDLAIGNVPFGQYQVRDKAYDKLNFSIHNY----------------- 1486 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 K GG A V + +S +RR+L + + ++ LP D F Sbjct: 1487 ---FFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAF 1538 Query: 399 -FRTNIATYLWILSNRKTEERRGKV 422 I+ +K + V Sbjct: 1539 KKNAGAEVVSDIIFLQKRDRPLDIV 1563 >gi|215401130|ref|YP_002332385.1| putative methyltransferase [Staphylococcus phage phiSauS-IPLA35] gi|215260481|gb|ACJ64611.1| gp22 [Staphylococcus phage phiSauS-IPLA35] Length = 229 Score = 43.8 bits (102), Expect = 0.097, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 71/215 (33%), Gaps = 19/215 (8%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 S I + D ++ +LY + + + + Y+ F Sbjct: 2 SSMINDILDIKDSYQAPQKIMD--MLYGDIEE--RNKTFMEFLKAYKNDVNYDWFHEYFQ 57 Query: 168 SE--VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 E + + TP+ + L L+ D Y+P GTGG + + N Sbjct: 58 DEHANRKKHKQDFTPKSISKLLVELVSDKQGD-----------YYEPAAGTGGIVIEKWN 106 Query: 226 HVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRR-DLSKNIQQGSTLS 283 + S P + + +EL T + M+IR + + D+ G+ Sbjct: 107 NDRMQHSPFDYLPSMYFYIAEELSDRTIPFLLFNMIIRGMNGLVVQCDVLTREAYGAWFI 166 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 ++ L+ P+ + EK+ + EH+ Sbjct: 167 QNDKNDHLGFSSLNRLPYTEDIEKELNIKFVEHRY 201 >gi|317178356|dbj|BAJ56144.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30] Length = 366 Score = 43.8 bits (102), Expect = 0.098, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 12/180 (6%) Query: 42 RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L+ AL + + + + + + E F + T L+ L Sbjct: 173 RYLKDALIKYQEKTQVSSIFKNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151 + NL++ +S +N I E DF + +++ LL +I + + +++ Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSILKDLNDD 290 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + YE + + ++ E + TP VV L FK++P +++ D Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSSLKTHFKDAPLGLKSALD 350 >gi|329768016|ref|ZP_08259527.1| hypothetical protein HMPREF0428_01224 [Gemella haemolysans M341] gi|328838501|gb|EGF88109.1| hypothetical protein HMPREF0428_01224 [Gemella haemolysans M341] Length = 300 Score = 43.8 bits (102), Expect = 0.098, Method: Composition-based stats. Identities = 47/313 (15%), Positives = 101/313 (32%), Gaps = 53/313 (16%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPD------TVPDRVMSNIYEHLIRRFGSEVS 171 F + + GL + N+ +E D + Y+ L+ + E++ Sbjct: 9 FKIDKQVEENKGGGLYFDSLVNYLTLENDEDYFDIVDNFSKEDIKKAYQFLLLKALKELN 68 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +TP +V+ + + +L+ ++ D G+G FL + Sbjct: 69 -NPSYDITP-EVITMYASHILE------CLYNNEKISVADFASGSGNFLINLAALSKGDY 120 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + +L +E I L K+ Sbjct: 121 ELTSVDVDNNYARLQQN-------IFNLLETNVE----------IINQDALKP--LNIKK 161 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 +S+ PFG ++D K S ++LF+ AN L Sbjct: 162 QDVIISDVPFGYYADEDNSLNYKLCSAEGY----------SLNALLFIEQAANYLNDS-- 209 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G +V+ L E +++L E+ + A++ LP ++F + + +++ Sbjct: 210 --GVGVLVVPKKVL------ELEDNFKKFLEEDINLNAVITLPDEMFKNASQQKAIILIT 261 Query: 412 NRKTEERRGKVQL 424 + + +V L Sbjct: 262 KKGQTKLPNQVFL 274 >gi|290243013|ref|YP_003494683.1| helicase domain protein [Thioalkalivibrio sp. K90mix] gi|288945518|gb|ADC73216.1| helicase domain protein [Thioalkalivibrio sp. K90mix] Length = 1722 Score = 43.8 bits (102), Expect = 0.098, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 79/255 (30%), Gaps = 58/255 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S + + + TP +V L + + +PT G+G F+ Sbjct: 81 EYASMRASVLDAYFTPESLVRLMWS--------GLARLGFAGGRVLEPTVGSGAFIEHVP 132 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + D + G E++ + + A P + + + +L Sbjct: 133 DALRDH---------ITVTGIEIDAVSARLAKA--------LYPGHYIVEKPFEAVSL-- 173 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + NPP+ + D+ A + + +A Sbjct: 174 ---QDEAFDAAIGNPPYDARTVFDRTAKKLKGSIHTF-------------------TMAK 211 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 ++ GG A V+S L G + R WLL++ + A LP ++F Sbjct: 212 AMKKV-RAGGVGAFVVSRYAL------DGFDDARDWLLDHTRLLAAYRLPVEVFKDAGAE 264 Query: 405 --TYLWILSNRKTEE 417 T + L Sbjct: 265 VITDVVFLQRVDEAN 279 >gi|328949537|ref|YP_004366873.1| SNF2-related protein [Treponema succinifaciens DSM 2489] gi|328449861|gb|AEB15576.1| SNF2-related protein [Treponema succinifaciens DSM 2489] Length = 2135 Score = 43.8 bits (102), Expect = 0.099, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 48/238 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 +F TPR++V + T+ +P+ GTG F + + Sbjct: 75 EFYTPRNLVAKVWGIA--------DHYAPNAVTVLEPSSGTGRF------------ADGR 114 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRFHY 294 H ++ ++ + K + K + ++ Sbjct: 115 PKNNFTMHEKDEVS-----ARINKILHPNANIIEGAFQKQFFDENERFKKIGYQLPKYDL 169 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 + NPP+G D + + + GR+ F+ L+ Sbjct: 170 VIGNPPYGT----YNDKYKGLGEGKDFGRYEEY----------FIQKGLESLKD---ENS 212 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 V+ S L + L +LI+A LP F T + T + +L Sbjct: 213 LLVFVVPSGFLRTVADKPKTAIA----LTGELIDA-YRLPEGTFPTTQVGTDIIVLKK 265 >gi|193297458|gb|ACF17793.1| putative helicase/DNA methylase [Helicobacter pylori] Length = 2609 Score = 43.8 bits (102), Expect = 0.099, Method: Composition-based stats. Identities = 63/413 (15%), Positives = 117/413 (28%), Gaps = 76/413 (18%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F S + + TP L + D L + + +++P+ GTG F+ Sbjct: 721 EFRRAYSSTRDAYYTP----KLVIDSIYQGLDQLGFNNDNHQKEIFEPSLGTGKFI---- 772 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +H G EL+P + + L N +T + Sbjct: 773 -------AHAPSDKNYRFVGTELDPISANISK--------------FLYPNQVIQNTALE 811 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + + + + NPP+G + E +++ FL Sbjct: 812 NHQFYQEYDAFVGNPPYGSHKIYSSNDKELSNESVHNY---------------FLGKAIK 856 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 +L+ G A V+ S F ++R + +N + LP +F T Sbjct: 857 ELKDD----GIGAFVV--SSWFMDGKNP---KMREHIAQNATFLGAIRLPNSVFKATGAE 907 Query: 405 TYLWILSNRKTEERRGKVQLINATDLW----------TSIRNEGKKRRIINDDQRRQILD 454 I+ +K + A + T + + + +I++ Sbjct: 908 VSSDIVFFKKGVDGATNQSFTKAMPYYDKIIDSLDDDTLFALQNNRFDSFTPSDQLKIVN 967 Query: 455 I---YVSRENGKFSRML---DYRTFGYR-------RIKVLRPLRMSFILDKTGLARLEAD 501 + + K R D FGYR + + + + L++ L Sbjct: 968 AIASHFGFKQEKLQRWYEKIDTANFGYREQDYKIIKGFIDKVGENNINLNEQTLNEYFIH 1027 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 L L + +QIY Y K S K K Sbjct: 1028 HPENILGHLSLEKTRYSFEINGEQIYKYELQALEDKSLDLSQALHQAIEKLPK 1080 >gi|312902762|ref|ZP_07761966.1| N-6 DNA Methylase [Enterococcus faecalis TX0635] gi|310633816|gb|EFQ17099.1| N-6 DNA Methylase [Enterococcus faecalis TX0635] Length = 335 Score = 43.8 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 104/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFRTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIR 435 LF + I+ N+ + E+ +V L L + Sbjct: 279 LFKSEQSRKSILIVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|167010571|ref|ZP_02275502.1| DNA-methyltransferase, type I restriction-modification enzyme subunit M [Francisella tularensis subsp. holarctica FSC200] Length = 103 Score = 43.8 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 11/109 (10%) Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418 + LF + + +++ LLEN + IV+LP +F + + T + E Sbjct: 1 MPEGVLF--QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGS 55 Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467 + + K + + + + L+I+ S + Sbjct: 56 TTDIFYYEVNPPYKLT-----KNKPVQFEHFAEFLEIWQSHKLTDIVNP 99 >gi|297529054|ref|YP_003670329.1| N-6 DNA methylase [Geobacillus sp. C56-T3] gi|297252306|gb|ADI25752.1| N-6 DNA methylase [Geobacillus sp. C56-T3] Length = 329 Score = 43.8 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 43/256 (16%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP V L+ + + DP GT LT +N + + Sbjct: 93 HQMTPDAVSLFLAYLV------REFTRSHLALKILDPAVGTANLLTAVLNGLRGKQAAS- 145 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G +++ + + + + +L + Sbjct: 146 -------YGSDVDDLLVKLAYVNANL--------QKHPVQLFNQDSLRP--LFVEPVDVV 188 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + + P G + D D + + GR S LF+ + GG Sbjct: 189 VCDLPVG--YYPDDDNAARFALKAKEGR--------SYAHHLFIEQSLRYTKE----GGY 234 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 ++ + LF+ +E + E +++ ++ LP +F A + IL + Sbjct: 235 LFFLIPN-TLFSSPQAGQLNEFLK---EAAIVQGVLQLPLSMFKNDQAAKSVLILQKKGP 290 Query: 416 E-ERRGKVQLINATDL 430 ++ V L+ Sbjct: 291 NVKKPKHVLLVELPRF 306 >gi|20385053|gb|AAM21167.1|AF254788_2 BssSI DNA modification methyltransferase [Geobacillus stearothermophilus] Length = 1127 Score = 43.8 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 77/257 (29%), Gaps = 38/257 (14%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 E + TP+ + + T + + K S + + D +CG G FLT + Sbjct: 105 DEERKKMGAVFTPKWLANYVTKRAIYYWNENNKSS---LERVGDLSCGPGIFLTQLQKY- 160 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGST 281 +G + PE + L+ LE +Q Sbjct: 161 --------TGQNTKIYGVDSNPEYVFLAS---LLSGSEERVFLECADTLINLAPEEQCDL 209 Query: 282 LSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 S+ K + + NPP+ K ++ H G + G + + + Sbjct: 210 FSQMYQTPSKDYDIIVGNPPYVSS--KTISSIYSNHIKELYGDYIEG-----NYDLS-VP 261 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLENDLIEAIVALPTD-LF 398 + + + N G A IV S E R +LE I+ +F Sbjct: 262 FIVHTYKALKNNGIGALIVSSKFMHSRYGKKICELLARNTKILE------IIDFGDGQVF 315 Query: 399 FRTNIATYLWILSNRKT 415 + I S +K Sbjct: 316 KGKTTYVCVIIFSKQKP 332 >gi|317495997|ref|ZP_07954359.1| hypothetical protein HMPREF0432_00963 [Gemella moribillum M424] gi|316913901|gb|EFV35385.1| hypothetical protein HMPREF0432_00963 [Gemella moribillum M424] Length = 300 Score = 43.8 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 49/313 (15%), Positives = 106/313 (33%), Gaps = 53/313 (16%) Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVS 171 F + + GL ++ + +E D + +Y+ L+ + E++ Sbjct: 9 FKIDKQVEEAKGQGLYFEALTKYLTLENDDEYFDIVDNYDKETIRKVYQFLLLKALKELN 68 Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 +TP +V+ + + L++ ++ D G+G FL + V Sbjct: 69 -NPSYDITP-EVITMYVSHLIE------CIYGEEKISIADFASGSGSFLINIAALVKGEK 120 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 I + + +L ++ I L K+ Sbjct: 121 DFTSIDVDSNYVKLQQN-------IFNLL----------EVPAEIINQDVLKP--LNIKK 161 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 +S+ PFG + D K + S ++LF+ +AN L Sbjct: 162 QDVIISDVPFGYYADGDNSLNYKLCSSEGY----------SINALLFIEQVANYLAED-- 209 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G +V+ L E +++L E + A++ LP ++F ++ A L +++ Sbjct: 210 --GVGVLVVPKQIL------ELEDNFKKFLEEEINLNAVITLPEEMFKNSSQAKALILIT 261 Query: 412 NRKTEERRGKVQL 424 + ++ +V L Sbjct: 262 KKGQKKLPSQVFL 274 >gi|306833453|ref|ZP_07466580.1| possible endonuclease-methyltransferase fusion protein [Streptococcus bovis ATCC 700338] gi|304424223|gb|EFM27362.1| possible endonuclease-methyltransferase fusion protein [Streptococcus bovis ATCC 700338] Length = 1107 Score = 43.8 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 79/251 (31%), Gaps = 55/251 (21%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES--YIA 105 T SA++E Y +ID + F+ +++N +L L + + N+ I Sbjct: 256 FNATSSAIKELYGVDSDKSIDSKVFLFAT-QTYFNI---TLKILIDSFIK-NITDPATIL 310 Query: 106 SFSDNAKAIFEDF-----------------------------DFSSTIARLEKAGLLYKI 136 F + I E F D + + + K ++ + Sbjct: 311 DFKLSWSEIIELFEGRETENSSIISNFFEIHYYEWFTYLASEDQQNIVTNIIKN--IFNL 368 Query: 137 CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 + F V+ IY LI ++ ++ +P +++ Sbjct: 369 IQQFDLATYKLRPEEVQDVLQEIYMTLI---PEQIRHLLGEYFSP--------DWIVEHS 417 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPE 250 + + + DPTCG+G F+ A+ V + G +L P Sbjct: 418 LDRIGYFGDIDKKIIDPTCGSGAFVIQALKRVLNARGNSITHEDAKKITKNIVGFDLNPI 477 Query: 251 THAVCVAGMLI 261 + A ++ Sbjct: 478 SAVSAKANYIL 488 >gi|150010437|ref|YP_001305180.1| type I restriction enzyme, M subunit [Parabacteroides distasonis ATCC 8503] gi|237708421|ref|ZP_04538902.1| type I restriction enzyme [Bacteroides sp. 9_1_42FAA] gi|149938861|gb|ABR45558.1| type I restriction enzyme, M subunit [Parabacteroides distasonis ATCC 8503] gi|229457642|gb|EEO63363.1| type I restriction enzyme [Bacteroides sp. 9_1_42FAA] Length = 253 Score = 43.8 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 33/160 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ + + G +V+ F TP D+ L + A + + DP Sbjct: 85 DAFGDLFMAISSKIGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 TCG ++H ++L + V ML+ + Sbjct: 135 TCG------------RLLLAYHVRHLGNYLVAEDLNHTCCLMTVCNMLVHGCIGE----- 177 Query: 273 SKNIQQGSTLSKDLFTGKRF---HYCLSNPPFGKKWEKDK 309 + +L + F + P ++ K++ Sbjct: 178 ---VIHHDSLFPENFMDGWMVNHTLTQTGIPTIRRMSKEE 214 >gi|325297578|ref|YP_004257495.1| helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317131|gb|ADY35022.1| helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 1657 Score = 43.8 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 82/252 (32%), Gaps = 49/252 (19%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 S + F TP + F+E+ +R+ +P+ G GGFL AM Sbjct: 88 MNSIKASVLTAFYTP----DFLIEAVAGQIHTTFRENGLQMRSFLEPSAGIGGFLPVAMG 143 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSK 284 ++A+ +I L D + + G + + Sbjct: 144 GTH----------------------SYAIEKD--IITGLVLSLLHDEATTVTGGFEAIDR 179 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 ++F SN PFG D + + K G + + + F+ + Sbjct: 180 QELEHRKFDVIASNIPFGNFRVFDTEFWK---KGGIYEQATKTIH-----NYFFVKAM-- 229 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN-- 402 N GG A V S G +R +L+ + + + V LP LF +T+ Sbjct: 230 ---ELLNEGGLLAFVTSRGVADT----PGSKFVREYLVSHADLISAVRLPDTLFMQTSGI 282 Query: 403 -IATYLWILSNR 413 + + L I Sbjct: 283 EVGSDLLIFQKH 294 >gi|317476133|ref|ZP_07935385.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii 1_2_48FAA] gi|316907771|gb|EFV29473.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii 1_2_48FAA] Length = 1658 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 75/242 (30%), Gaps = 49/242 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP + A F ++ +RT +P+ G GGFL AM Sbjct: 98 AFYTP----KFLIDAVARQIHATFMDNGLQMRTFLEPSAGIGGFLPVAM----------- 142 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294 P+T + L D + + G T++ F Sbjct: 143 -------------PDTRGYAFEKDCLTGLILSLLHDKTTTVTAGFETIADQHLEHGSFDV 189 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 SN PFG D + + K G + + + F+ + N GG Sbjct: 190 IASNIPFGNFRVFDAEMWK---KGGMYEQSAKTIH-----NYFFVKAM-----ELLNEGG 236 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411 A V G +R +L+ + + + LP LF +T+ + + L I Sbjct: 237 LLAFVAPRGIADT----PGNKFVREYLVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQ 292 Query: 412 NR 413 Sbjct: 293 KH 294 >gi|300021889|ref|YP_003754500.1| N-6 DNA methylase [Hyphomicrobium denitrificans ATCC 51888] gi|299523710|gb|ADJ22179.1| N-6 DNA methylase [Hyphomicrobium denitrificans ATCC 51888] Length = 957 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 78/280 (27%), Gaps = 40/280 (14%) Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-SEGAEDFMTPRDVVHLATAL 190 + + + ++ LI ++ TP +V L Sbjct: 284 RFASLVEGYEDAGGQLSFWRLYSFKDLPVELISHIYQLFVTDTDSSVYTPPTLVRLMLDE 343 Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------- 240 L + DP CG+G FL +A + Sbjct: 344 ALS--WDRIDRLMASREIVLDPACGSGVFLVEAYKRLVLHWRSRNDWAKPGVDELRTLLD 401 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-----GSTLSKDLFTGKR---- 291 HG +LE + + + ++ ++ +++ ++L K F + Sbjct: 402 RVHGIDLEAGAVELAAFSLCLALCDALEPEEIRASVKLFPKLADASLHKRCFFEAKEEAL 461 Query: 292 ----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS--MLFLMHLANK 345 + NPPF + G+ +D LFL Sbjct: 462 IKAPVGVLVGNPPFESSLTTPAAKRAYAAYVKQHGKL-------ADQQVAYLFLHEAMGM 514 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGS-GESEIRRWLLEN 384 GG +++ S L+N AG ES +RW + Sbjct: 515 ----TAEGGVLSMIQPSGFLYNQHAGEFRESFFKRWNVRE 550 >gi|198275220|ref|ZP_03207751.1| hypothetical protein BACPLE_01379 [Bacteroides plebeius DSM 17135] gi|198271803|gb|EDY96073.1| hypothetical protein BACPLE_01379 [Bacteroides plebeius DSM 17135] Length = 1180 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 71/273 (26%), Gaps = 58/273 (21%) Query: 66 NIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFS-- 121 + V Y F+NT +E + N++ Y+ K + D Sbjct: 252 EGNDRLLSDVLEYLFFNTLNEKREGDIADARLGENIKIPYLNGGLFE-KDSIDKLDIDFP 310 Query: 122 -STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 S L +Y + + + + ++ +I+E+L+ E ++ F TP Sbjct: 311 YSNFKELMDFFAMYNFTIDENDPDDSEVGIDPEMLGHIFENLL-----EDNKDKGAFYTP 365 Query: 181 RDVVHLATAL-----LLDPDDALFKESP--------------------------GMIRTL 209 +++V L + P + Sbjct: 366 KEIVQYMCRQSVLQYLKTHESDEQYAEPIEQLINNGIVLPVLQTKSVASRFMQLLKDVKV 425 Query: 210 YDPTCGTG----GFLTDAMNHVADCGSHHKIPP------------ILVPHGQELEPETHA 253 DP G+G G L + + SH + G ++E Sbjct: 426 CDPAIGSGAFPMGILYVLYHAIHHLQSHAEPHGSFNSTQTKRDIIQNNIFGVDIEQGAVD 485 Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + + + N+ T Sbjct: 486 IARLRFWLALVVDADEPQPLPNLDYKITCGNSQ 518 >gi|329963203|ref|ZP_08300940.1| hypothetical protein HMPREF9446_02533 [Bacteroides fluxus YIT 12057] gi|328528899|gb|EGF55839.1| hypothetical protein HMPREF9446_02533 [Bacteroides fluxus YIT 12057] Length = 1176 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 39/353 (11%), Positives = 93/353 (26%), Gaps = 91/353 (25%) Query: 42 RRLECALEPT-----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 R L LEP + + E+ F + ++ + G + N + + + Sbjct: 256 RLLSDVLEPLFFGILNTKIEERETFFLKNQWNISLLKEFNGIPYLNGGLFDKDKIDELDI 315 Query: 97 RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 + S+ + F ++F +++ + + ++ Sbjct: 316 -----DFPYSYFKDLMEFFSIYNF-----TIDEND-----------PDDSEVGIDPEMLG 354 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG------------ 204 +I+E+L+ E ++ F TP+++V + + Sbjct: 355 HIFENLL-----EDNKDKGAFYTPKEIVQYMCRQSIIQYLKTHEPDEQYVEPIEELINNG 409 Query: 205 -------------------MIRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPIL- 240 + DP G+G G L + + S+ + Sbjct: 410 IIMPILQAQSIASRFMQLLKNVKVCDPAIGSGAFPMGILYVLYHAIHHLQSYAEPHGDFD 469 Query: 241 -----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 G ++E + + + + N+ T Sbjct: 470 STKTKRNIIQNNIFGVDIEQGAVDIARLRFWLALVVDANEPEPLPNLDYKITCGN----S 525 Query: 290 KRFHYCLSNP---------PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 + Y L+ P GK+ K ++ + G + D Sbjct: 526 QICRYSLNTPISDVFVEYNRIGKETAKKENKTWNDFTLENYKNLVVGYTEEHD 578 >gi|168205250|ref|ZP_02631255.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str. JGS1987] gi|170663156|gb|EDT15839.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str. JGS1987] Length = 1679 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 104/366 (28%), Gaps = 50/366 (13%) Query: 66 NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF------D 119 N E +N + ++S + + +T + I + N IF F Sbjct: 36 NEKHELISNSLFNFLFNNDQKTISNIKTEDTTD-----IDDSNVNVIEIFNSFVDDAEKK 90 Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179 S I +++ + L + K+ + + + + LI+ ++ + + + Sbjct: 91 IKSNINKIKDSILDLLVSKDTTSDTYSERYKDNLNAIKLVKSLIK--ANKKATTNQQKIL 148 Query: 180 PRDVVHLATALLLDPDDALFKES-----PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + V + D+ K R++ + + G Sbjct: 149 SKYVGWGGLSNAFSEDETKLKNILENDFESAKRSVNTAFFTNAIIVKYMWKVLLRLGFEK 208 Query: 235 KIPPILVP-HGQEL---EPETH---AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 G P+ + + M I + + S I S + Sbjct: 209 GRILEPSIGTGNMFRYSNPDMYYNSKIIGIEMDILTSQIASQLLQSATIIN-SRYEETSL 267 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + F +SN PFG DK+ E + F + K+ D Sbjct: 268 KDESFDLIISNIPFGDIKIFDKEYPEFSNYYVHDYYFLKSIKKVRDK------------- 314 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 G A V G EIR + ++ + LP+ F T + + + Sbjct: 315 ------GIIAFVT-----STGVMDKRNQEIRELISKDCDFLGAIRLPSGSFSDTKVVSDI 363 Query: 408 WILSNR 413 L Sbjct: 364 IFLQKN 369 >gi|311112122|ref|YP_003983344.1| methyltransferase [Rothia dentocariosa ATCC 17931] gi|310943616|gb|ADP39910.1| methyltransferase [Rothia dentocariosa ATCC 17931] Length = 578 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 96/287 (33%), Gaps = 57/287 (19%) Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRFHYCL 296 ++ P A +L+ + + +N++ +L + D G++F + Sbjct: 217 HVTATDISPRALAFARFNLLL---NAPALKLDPQNLEARVSLRQGSLLDPVAGEQFDLVV 273 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 SNPPF + ++ + + + GLP G + + L ++ GGRA Sbjct: 274 SNPPFVITPRRADESSDDQFTYRD-----GGLP----GDDI-VSTLIRRIPEVLVPGGRA 323 Query: 357 AIVLSSSPL--FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR- 413 ++ + G A ++ +R W E+ T + W++ Sbjct: 324 QMLGNWEIHRDNTGEAQPWDARLRTWFAES---------------ATGTPSEAWVIQREV 368 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 T E + L +A++ R + Y + + +R + F Sbjct: 369 LTPESYAETWLKDASENRD----------------RDHYENTYRAYLDDFKNRNVHSIGF 412 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 G + LR +T DIT+ P+ QS + + Sbjct: 413 G------MLWLRRRAHTTETAPLNRFEDITYPIAQPIAQSITEAVAR 453 >gi|317181593|dbj|BAJ59377.1| hypothetical protein HPF57_0303 [Helicobacter pylori F57] Length = 2818 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 99/318 (31%), Gaps = 69/318 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TP L + D L + + +++P+ GTG F+ +H Sbjct: 984 AYYTP----KLVIDSIYQALDQLGFNNDSHQKEIFEPSLGTGKFI-----------AHAP 1028 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL+P + + L N +T ++ + + Sbjct: 1029 SDKNYRFMGTELDPISANISK--------------FLYPNQVIQNTALENHQFYQEYDAF 1074 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPP+G + E +++ FL +L+ G Sbjct: 1075 VGNPPYGSHKIYSSNDKELSNESVHNY---------------FLGKAIKELKDD----GI 1115 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA-TYLWILSNRK 414 A V+ S F S ++R + +N + LP +F T T + + Sbjct: 1116 GAFVV--SSWFMDGKNS---KMREHIAQNATFLGAIRLPNSVFKNTGAEVTSDIVFFKKG 1170 Query: 415 TEERRGKVQ---------LINATDLWTSIRNEGKKRRIINDDQRRQILDI---YVSRENG 462 +E + +I++ D T + + + +I++ + + Sbjct: 1171 VDEATNQSFTKAMPYYDKIIDSLDDNTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQE 1230 Query: 463 KFSRML---DYRTFGYRR 477 K R D FGY+ Sbjct: 1231 KLQRWYEKIDTANFGYKE 1248 >gi|310722681|ref|YP_003969504.1| hypothetical protein phiAS5_ORF0215 [Aeromonas phage phiAS5] gi|306021524|gb|ADM80058.1| hypothetical protein phiAS5_ORF0215 [Aeromonas phage phiAS5] Length = 417 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 10/121 (8%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + +F TP +VV+ T ++P+CG G L + + Sbjct: 293 KQTAEFFTPIEVVNKML--------DHTDIDTSKTSTFFEPSCGDGNILEGIVKRMQATR 344 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + L+R L R L++ I +TL D + R Sbjct: 345 LDSDTIVSRIYACEYMRDN--REAAIERLVRLLGEKQRDKLNERIAYCNTLDPDDTSDGR 402 Query: 292 F 292 F Sbjct: 403 F 403 >gi|126741164|ref|ZP_01756844.1| hypothetical protein RSK20926_02032 [Roseobacter sp. SK209-2-6] gi|126717687|gb|EBA14409.1| hypothetical protein RSK20926_02032 [Roseobacter sp. SK209-2-6] Length = 1603 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 87/325 (26%), Gaps = 51/325 (15%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADC 230 + TP +VV + D + F ++ G + DP GTG F+T + Sbjct: 867 QRLGIVYTPVEVVDFILHSVNDVLKSQFGQTLGSKGVHILDPFTGTGTFITRLLQSGLIS 926 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPRRDLSKNIQQGSTL- 282 + H E+ + + + L D + K I T Sbjct: 927 PEELEHKYKHEIHANEIVLLAYYIAAVNIETVYHELAQGALSDDAPYEPFKGILLTDTFQ 986 Query: 283 ------------------SKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELG 322 + + NPP+ G+ D A + E Sbjct: 987 MYEQERDMIANLLPDNSERRTRQKELDIRVIIGNPPYSAGQNSANDNAANIGYAQLDEKI 1046 Query: 323 RFGPGLPKIS-DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 R + + + L+ ++ G A V ++ + G A G +R+ Sbjct: 1047 RDTYAAESTATNKNSLYDSYIRAIRWASDRIGDAGVMAYVSNAGWV-EGNAADG---LRK 1102 Query: 380 WLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQL 424 L E + L + +F + + + G++ Sbjct: 1103 CLAEEFSDLYVFHLRGNQRTSGEKSRKEGGKIFGSGSRAPIAISVFVKNPDATEHGRIHF 1162 Query: 425 INATDLWTSIRNEGKKRRIINDDQR 449 + D + R + D Sbjct: 1163 HDIGDYLDQKQKLSIVRDFRSVDGI 1187 >gi|294646402|ref|ZP_06724047.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|292638270|gb|EFF56643.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] Length = 1354 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 77/246 (31%), Gaps = 53/246 (21%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP VV L P PG DP+ GTG + V + Sbjct: 20 NSVLTAFYTPEPVVTAMQESLQVP-----GIRPG---RFLDPSAGTG-MFISGLKGVPEV 70 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 K A+ D ++IQ + Sbjct: 71 HCFEKDKLTGKILSALYPESRVAI----------------DGFQSIQP--------YYNN 106 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELP 349 F SN PFG D+D E + + S S+ + + K Sbjct: 107 YFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFLKGMDT 153 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYL 407 + GG A + +S + + + +R WL+ + + + + LP +LF T +++ L Sbjct: 154 LHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTEVSSDL 209 Query: 408 WILSNR 413 +L Sbjct: 210 IVLQKN 215 >gi|56421321|ref|YP_148639.1| hypothetical protein GK2786 [Geobacillus kaustophilus HTA426] gi|56381163|dbj|BAD77071.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 329 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 78/256 (30%), Gaps = 43/256 (16%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP V L+ + + DP GT LT +N + ++ Sbjct: 93 HQMTPDAVSLFLAYLV------REFTRSHLALKILDPAVGTANLLTAVLNGLRGKQANS- 145 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G +++ + + + + +L + Sbjct: 146 -------YGSDVDDLLVKLAYVNANL--------QKHPVQLFNQDSLRP--LFVEPVDVV 188 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + + P G + D D + + GR S LF+ + GG Sbjct: 189 VCDLPVG--YYPDDDNAARFSLKAKEGR--------SYAHHLFIEQSLRYTKE----GGY 234 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 ++ + LF+ +E + E +++ ++ LP +F A + IL + Sbjct: 235 LFFLIPN-MLFSSPQAGQLNEFLK---EAAIVQGVLQLPLSMFKNDQAAKSVLILQKKGP 290 Query: 416 E-ERRGKVQLINATDL 430 ++ V L+ Sbjct: 291 NVKKPKHVLLVELPRF 306 >gi|108563867|ref|YP_628183.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori HPAG1] gi|107837640|gb|ABF85509.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori HPAG1] Length = 134 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 9/81 (11%) Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFT 288 K G EL E ++ M++R D S I +G+T SK ++ Sbjct: 20 NEKIKNAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETSKKIYE 72 Query: 289 GKRFHYCLSNPPFGKKWEKDK 309 + + L NPPF + Sbjct: 73 DFKPNILLLNPPFSYEENGMP 93 >gi|257076666|ref|ZP_05571027.1| type I restriction-modification system methylation subunit [Ferroplasma acidarmanus fer1] Length = 139 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 12/115 (10%) Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN--IDLESFVK 74 A+ + + IL ++RL + V + + E+ + Sbjct: 20 NAADLVRTSVD---YK-YILILLFIKRLSDGW---KEEVEDAMSKIMEEAGIDESEAGKR 72 Query: 75 VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFDFSSTIARLE 128 F+N N R + E + S I E+ + + R++ Sbjct: 73 AVSNEFHNF--MVPENALCNNIRKDREKLKENMSRGINEIAKENKELDEIVNRID 125 >gi|315655210|ref|ZP_07908111.1| helicase [Mobiluncus curtisii ATCC 51333] gi|315490465|gb|EFU80089.1| helicase [Mobiluncus curtisii ATCC 51333] Length = 1724 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 64/248 (25%), Gaps = 37/248 (14%) Query: 108 SDNAKAIFEDF----DFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVPDRVMSNIYEHL 162 S + I + +F + L K Y + + + I+ +M +Y+ Sbjct: 869 SRAMQGILDRLASSQEFENEREPLAK---FYDTMAEKITAIDNLAGKQE--IMRTLYDKF 923 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLT 221 + + + TP VV F + G + +P GTG F++ Sbjct: 924 FTKAFPAMQDRLGIVFTPVPVVDYILHSAEAAMQKHFGKGLGDKGVAIIEPFLGTGTFVS 983 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKN 275 + H + + E+ ++ + + + E D Sbjct: 984 RLLQSGIIPPEHLEHKYLHEIFANEIVLLSYYIASINIEQVYHQIRLEQEHDDEYVEFPG 1043 Query: 276 IQQGSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 I T + + NPP+ + D + Sbjct: 1044 ISLADTFQLTEQRNHAEGGGVFVDNNERTNRQIETPIRVVVMNPPYSAGQKSANDNNQNL 1103 Query: 316 HKNGELGR 323 R Sbjct: 1104 KYPQLDAR 1111 >gi|229496983|ref|ZP_04390688.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC 35406] gi|229316085|gb|EEN82013.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC 35406] Length = 2065 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 122/401 (30%), Gaps = 68/401 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + IR DP+ G G F ++ + +I + P+G Sbjct: 111 IVAAISDALTATNVQIRRCLDPSAGMGAFTETFSKKAGTVDAMEKDLLTARISQAIHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 Q+ +++R+ + +L ++ SN PFG Sbjct: 171 QD-----------NIIVRQAPFEAIGELED--------------KDKYDLVTSNIPFG-- 203 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D ++E+ G+ I + + K GG A + S Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR--KTEERR 419 L + + IRR+L++N + + + LP+ +F T + + L +L + KT Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQSGKTISEG 309 Query: 420 GKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR-- 476 + Q + + + + K + D + + I ++ E + Y Sbjct: 310 MEQQFVASVSAPIAEGSSVVFKHNSLFDGEWKDITHRTIATERTMGRDPYGKPAWEYHFD 369 Query: 477 ------------RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 ++ + R+ L +TG+ E + L + LK Sbjct: 370 GGIDDMAENIRTQLSLEFEQRLDRKLYETGIPMTEEERQAEAEKQLQKLGITTKLKTKTD 429 Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 + + + K L K + + Sbjct: 430 RQETEDKDIDNAYNLMPDSIRKQL-PKLYSTEKELIGDKVA 469 >gi|11497405|ref|NP_051524.1| adenine specific DNA methyltransferase [Borrelia burgdorferi B31] gi|6382426|gb|AAF07736.1|AE001584_33 adenine specific DNA methyltransferase [Borrelia burgdorferi B31] Length = 1098 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT---- 149 N N ++ N I I + + L I ++ I + DT Sbjct: 270 ENIEINFKNIENFIPTNFSLIQNIIKLIKDIHKDSEFNYLRWILESIISIVNNIDTKLIF 329 Query: 150 ----VPDRVMS------NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + ++ YE + ++ + + + TP +V + L + F Sbjct: 330 NEFSFTNSSLNLKDPYLYFYEDFLAKYDVSLRKAKGVYYTPSPIVSFIVSSLNEMLKKEF 389 Query: 200 KESPG----MIRTLYDPTCGTGGFLTDAMNHV 227 K + G T+ D GTG FL + + + Sbjct: 390 KLNHGLANKEKVTVLDFATGTGTFLLEVIRTI 421 >gi|319744479|gb|EFV96836.1| SNF2 family protein [Streptococcus agalactiae ATCC 13813] Length = 1998 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 50/390 (12%), Positives = 101/390 (25%), Gaps = 76/390 (19%) Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 ++ A ++ E F+ L+ TR+ +E+ + + + + Sbjct: 564 KQEEALSEDELEPEVTETPPATDFHFPE--DLTDFYPKTTRDKVETNV----AAVR-LVK 616 Query: 117 DFDFSSTIARLEKAGLLYKIC-------KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + A + LL K + F + + + + E + + Sbjct: 617 SLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREELKTLVTE---KEYSDM 673 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + T ++ + + DP+ GTG F H+ + Sbjct: 674 KQSSLTAYYTDPLLIREMWN--------KLERDGFTGGKILDPSMGTGNFFAAMPKHLRE 725 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 +G EL+ T + + +I+ F Sbjct: 726 NSE---------LYGVELDTITGVIAK------------HLHPNSHIEV-KGFETIAFND 763 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F LSN PF + R+ D + + K Sbjct: 764 NSFDLVLSNVPFA-------------NIRIADNRY--------DKPYMIHDYFVKKSLDL 802 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406 + GG+ AI+ G I + + E V LP F TN+ T Sbjct: 803 VHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDTAFKIIAGTNVTTD 857 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN 436 + + + + + Sbjct: 858 MLFFQKHMDKGYVADDLAFSGSIRYDKDDR 887 >gi|49420971|gb|AAT65827.1| M.EsaWC3I [uncultured bacterium] Length = 422 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 73/263 (27%), Gaps = 49/263 (18%) Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 + Y L + E TP ++V L + + Sbjct: 12 NFEEDTCYMIL----QNASEESLGAVYTPPELVAFMVHL---------AHPTQPRCRVLE 58 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LIRRLESDPRR 270 P C FL G E++P A + + +E+D Sbjct: 59 PACADAPFLAAFAERYGSH---------HEFVGVEIDPARLARARERLPTMTFVEADFLL 109 Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 + + F + NPP+G + + + L R + Sbjct: 110 WV---------------PNETFDVIIGNPPYGIIGDASHYPIHVLRERKALYRQRSLTWR 154 Query: 331 ISDGSM-LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 F+ H A L G+ V+ +S L +R +L + + Sbjct: 155 GKYNIYGAFIEHAARLLAPE----GKLVFVVPASWLVLDD----FVRLREYLATQGRL-S 205 Query: 390 IVALPTDLFFRTNIATYLWILSN 412 + L +F + N++ + +L Sbjct: 206 VYYL-GKVFPKRNVSVVVLVLEK 227 >gi|225621978|ref|YP_002724670.1| adenine specific DNA methyltransferase [Borrelia burgdorferi 94a] gi|225546239|gb|ACN92251.1| adenine specific DNA methyltransferase [Borrelia burgdorferi 94a] Length = 1086 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT---- 149 N N ++ N I I + + L I ++ I + DT Sbjct: 258 ENIEINFKNIENFIPTNFSLIQNIIKLIKDIHKDSEFNYLRWILESIISIVNNIDTKLIF 317 Query: 150 ----VPDRVMS------NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + ++ YE + ++ + + + TP +V + L + F Sbjct: 318 NEFSFTNSSLNLKDPYLYFYEDFLAKYDVSLRKAKGVYYTPSPIVSFIVSSLNEMLKKEF 377 Query: 200 KESPG----MIRTLYDPTCGTGGFLTDAMNHV 227 K + G T+ D GTG FL + + + Sbjct: 378 KLNHGLANKEKVTVLDFATGTGTFLLEVIRTI 409 >gi|317177484|dbj|BAJ55273.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16] Length = 1016 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 16/246 (6%) Query: 43 RLECALEPTRSAVREKYLAFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99 RL+ E + + G NI + + + TS + +N Sbjct: 754 RLKDIFEKNPEIFHDFLDSLRGNIHQNIKEDEALDM------ITSHIITKPIFDAIFGDN 807 Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 +++ I+ D L+ LY+ K + ++ N+Y Sbjct: 808 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 863 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218 + + SE TP +VV + T++DP GTG Sbjct: 864 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 923 Query: 219 FL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 F+ + + K + ++ + + + + D KNI Sbjct: 924 FIARLLSKENGLISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQSRDGSLKTFKNI 983 Query: 277 QQGSTL 282 +L Sbjct: 984 ALTDSL 989 >gi|261418201|ref|YP_003251883.1| N-6 DNA methylase [Geobacillus sp. Y412MC61] gi|319767839|ref|YP_004133340.1| N-6 DNA methylase [Geobacillus sp. Y412MC52] gi|261374658|gb|ACX77401.1| N-6 DNA methylase [Geobacillus sp. Y412MC61] gi|317112705|gb|ADU95197.1| N-6 DNA methylase [Geobacillus sp. Y412MC52] Length = 329 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 43/256 (16%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP V L+ + + DP GT LT +N + + Sbjct: 93 HQMTPDAVSLFLAYLV------REFTRSHLALKILDPAVGTANLLTAVLNGLRGKQAAS- 145 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G +++ + + + + +L + Sbjct: 146 -------YGSDVDDLLVKLAYVNANL--------QKHPVQLFNQDSLRP--LFVEPVDVV 188 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + + P G + D D + + GR S LF+ + GG Sbjct: 189 VCDLPVG--YYPDDDNAARFALKAKEGR--------SYAHHLFIEQSLRYTKE----GGY 234 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 ++ + LF+ +E + E +++ ++ LP +F A + IL + Sbjct: 235 LFFLIPN-TLFSSPQAGQLNEFLK---EAAIVQGVLQLPLSMFKNDQAAKSVLILQKKGP 290 Query: 416 E-ERRGKVQLINATDL 430 ++ V L+ Sbjct: 291 NVKKPKHVLLVELPRF 306 >gi|302520232|ref|ZP_07272574.1| type IIS restriction enzyme [Streptomyces sp. SPB78] gi|302429127|gb|EFL00943.1| type IIS restriction enzyme [Streptomyces sp. SPB78] Length = 1166 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 22/128 (17%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ R S +++ E ++ P +D + K S + DP CG+G Sbjct: 259 LWLLNRPASRLADQMEYYIAP-----------VDEETDYLKVSSPEKLKIIDPACGSGHM 307 Query: 220 LTDAMNHVADCGSHHKIPP--------ILVPHGQELEPETHAVCVAGMLIRR---LESDP 268 LT A + + P +G E++P A+ + ++ + Sbjct: 308 LTYAFDLLYAIYEEEGYAPSDIPALILSNNLYGTEIDPRAGALAAFALTMKGRARQRTFF 367 Query: 269 RRDLSKNI 276 RD+ NI Sbjct: 368 NRDVEPNI 375 >gi|196048388|ref|ZP_03115564.1| SNF2 family protein [Bacillus cereus 03BB108] gi|196020821|gb|EDX59552.1| SNF2 family protein [Bacillus cereus 03BB108] Length = 2366 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 93/362 (25%), Gaps = 60/362 (16%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 + DP GTG F + + +G E++P T + Sbjct: 623 KGGKVLDPAMGTGNFFSAMPEELK---------KNASLYGVEIDPLTGNIAK-------- 665 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + IQ + K F F + N PF + + Sbjct: 666 ----HLHQTSEIQV-TGFEKTDFQKGSFDVIVGNIPF------------DNFRLKDN--- 705 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 + K G A + S+ + + R + + Sbjct: 706 ------SLKKDYQIHDYFIKKSLDLVREDGIVAFISSAGTM-----DKRDYSFREEISKE 754 Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441 + V LP + F T + T + K++E K Sbjct: 755 AELLGAVRLPNNAFKKIAGTEVTTDILFFQK-KSKEVEHKTSPDWVFSGVDEKHPTISYN 813 Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLE 499 +++ + + DI V G+ + +VL PL + G + Sbjct: 814 NYFIENKEQVLGDIAVKNFRGQTLTVNPKED------EVLYPLLEEGLKRIEGQYIESNY 867 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559 + ++I+ P + + + + + + K + + I Sbjct: 868 EEKALENDIQDENEPKVEIISPQRTRPFTFIEQDKEIFYVDEEGLIKQELSQKAAERIKG 927 Query: 560 FI 561 I Sbjct: 928 MI 929 >gi|291086755|ref|ZP_06571656.1| putative MutS domain I [Clostridium sp. M62/1] gi|291076845|gb|EFE14209.1| putative MutS domain I [Clostridium sp. M62/1] Length = 2973 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 88/325 (27%), Gaps = 75/325 (23%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-YEH 161 F N KAI + + + A E+ LL + + P + Sbjct: 1352 EKFWRNIKAIATLKQIEQENRHATPEEQHLLSQYVGWGGLADAFDPEKPAWAAEYAQLKE 1411 Query: 162 LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ + + T V+ + + +P+CG G F Sbjct: 1412 LLTPEEYAAARGSTLNAHYTSPTVIRAIYEAVG--------RMGFETGNILEPSCGVGNF 1463 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSK 274 + +G EL+ + + A + + E+ RRD Sbjct: 1464 FGMLPEEMR----------NSRLYGVELDTVSGRIAQQLYPKANITVAGFETTDRRDF-- 1511 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + + N PFG+ DK +K G Sbjct: 1512 -----------------YDLAVGNVPFGQYQVNDKAY----NKLGFNI------------ 1538 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + K GG A V + +S +RR+L + + + LP Sbjct: 1539 ----HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSAVRRYLAQRAELLGAIRLP 1589 Query: 395 TDLF---FRTNIATYLWILSNRKTE 416 D F T + + + L R Sbjct: 1590 NDAFKKNAGTEVVSDIIFLQKRDRP 1614 >gi|258648321|ref|ZP_05735790.1| putative type IIS restriction endonuclease [Prevotella tannerae ATCC 51259] gi|260851483|gb|EEX71352.1| putative type IIS restriction endonuclease [Prevotella tannerae ATCC 51259] Length = 1120 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 47/220 (21%) Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189 NF+ E P+ ++ ++E+L+ + E E + F TPR++V+ Sbjct: 389 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 448 Query: 190 --LLLDPDDA--------------------LFKESPGMIRTLYDPTCGTG----GFLTDA 223 + D+ + DP CG+G G L Sbjct: 449 SLIAYLGDNDFTRSLFRNDFSFEKSKIEEYKKLAEKIKTVKILDPACGSGAFPMGLLNRM 508 Query: 224 MNHVADCGSHHKIPP------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 + + I +G +++ + I + + N Sbjct: 509 VEILERISPDEYIYNLKLSVIENCLYGSDIQSIAAQITKLRFFISLICDCEKDASKPN-- 566 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 + +N KK + + + + + Sbjct: 567 ----FGIPTLPNLETKFVSANSLVAKKKKPAQGNLFENPE 602 >gi|254412322|ref|ZP_05026096.1| hypothetical protein MC7420_6277 [Microcoleus chthonoplastes PCC 7420] gi|196180632|gb|EDX75622.1| hypothetical protein MC7420_6277 [Microcoleus chthonoplastes PCC 7420] Length = 995 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 39/324 (12%), Positives = 85/324 (26%), Gaps = 92/324 (28%) Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + + + +F F+F + ++ L V Sbjct: 300 DADDQNPEIIVLDEGIEAIILDLFASFNF-----TVTESTPL-----------DVEVAVD 343 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA--------------------TALL 191 ++ ++E L+ + TP+ +V Sbjct: 344 PEMLGKVFEELV-----TGRHETGSYYTPKPIVSFMCREALKGYLRCQLLAESVEAIEAF 398 Query: 192 LDPDDALFKESPGMI------RTLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPI 239 +D + + +P + + DP CG+G +L ++ + + Sbjct: 399 VDQHNPMGLINPEAVLGALRRVKVCDPACGSGAYLLGMLHELLELRQCLFATRKIDAKTD 458 Query: 240 LV---------PHGQELEPETHAVCVAGMLIR------RLESDPRRDLSKNIQQGSTLSK 284 V +G + + + + + + P +L I+ G +L Sbjct: 459 YVRKLEIIETNIYGVDSDVFAVNIARLRLWLSLAVEYEGDDPPPLPNLKFKIEVGDSLIA 518 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 NP G +D+ G + G K S L Sbjct: 519 P------------NPQPGSGMFRDELISRYRETKGAYLKAHLGGEKQS------LEEEIQ 560 Query: 345 KLELPPNGGGRAAIVLSSSPLFNG 368 +L+ G A++ S +G Sbjct: 561 RLK------GEIALLTHGSIQVSG 578 >gi|259508595|ref|ZP_05751495.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259163821|gb|EEW48375.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 427 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSN----IYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 L I + SG+++ YE + ++ E + A + TP VV Sbjct: 191 LGAIIRLISGMDVPAIQSAKDSRGEPWLWFYEDFLAKYDPEARKQAGVYYTPTSVVQCQV 250 Query: 189 ALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 ++ D F ++ G DP G+G + ++ + + P + Sbjct: 251 RMVDDVLRNRFGQTLGFGSKSVVTLDPATGSGTYPLAVIDQAVETAHIERGPAGTQQVAR 310 Query: 246 ELEPETHA 253 L A Sbjct: 311 NLTKNILA 318 >gi|23577984|ref|NP_702932.1| hypothetical protein CE2P014 [Corynebacterium efficiens YS-314] gi|23494810|dbj|BAC19774.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 554 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 133 LYKICKNFSGIELHPDTVPDRVMSN----IYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 L I + SG+++ YE + ++ E + A + TP VV Sbjct: 296 LGAIIRLISGMDVPAIQSAKDSRGEPWLWFYEDFLAKYDPEARKQAGVYYTPTSVVQCQV 355 Query: 189 ALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 ++ D F ++ G DP G+G + ++ + + P + Sbjct: 356 RMVDDVLRNRFGQTLGFGSKSVVTLDPATGSGTYPLAVIDQAVETAHIERGPAGTQQVAR 415 Query: 246 ELEPETHA 253 L A Sbjct: 416 NLTKNILA 423 >gi|324514530|gb|ADY45896.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Ascaris suum] Length = 445 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 81/261 (31%), Gaps = 24/261 (9%) Query: 69 LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128 + +K A + YN+ S + + + + Y D I LE Sbjct: 82 EDIRIKSAQFEKYNSPLQSFAIRIRSFGKKHDADYCNKIIDKLGDILP---LDKCPIDLE 138 Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH----LIRRFGSEVSEGAEDFMTPRDVV 184 A ++ + + + + ++ + + + L + + + ++ Sbjct: 139 NASNVFTVIEEYENCDGRDSSLNNIYFGRLIGYGQSRLKNLYNLKERCYIGNTTMDPELS 198 Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 + L+ M + DP CGTGG L A + A I G Sbjct: 199 FIQANLIKAN----------MGSIVLDPFCGTGGLLISAAHFGAAVIGTEINYQIARAVG 248 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----TLSK--DLFTGKRFHYCLSN 298 + + + + D ++ T+ + + + F +++ Sbjct: 249 RSSRVGKKFLTDNESVAANFKQYEIDDRFMSLIIADASRHTMWRCGNNKSDGIFDAIVAD 308 Query: 299 PPFGKKWEKDKDAVEKEHKNG 319 PP+G + + + KE K G Sbjct: 309 PPYGVREKG-RKVGNKERKTG 328 >gi|195450985|ref|XP_002072718.1| GK13537 [Drosophila willistoni] gi|194168803|gb|EDW83704.1| GK13537 [Drosophila willistoni] Length = 488 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 54/203 (26%), Gaps = 13/203 (6%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI+ + + + + L L ++DP GTG L Sbjct: 181 HLIKDLSLKHRKFIGNTSMDAQLSLLMANQALV----------APGDLVFDPFVGTGSLL 230 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A +L + + L+ D ++ Sbjct: 231 VSAAKFGGYVMGADIDYMMLHARCRPSRITQKVREKDESIRSNLKQYGCADRYMDVVVAD 290 Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S F +++PP+G + +K + K G P S ++ L Sbjct: 291 -FSNPLWHPRVSFDSIITDPPYGIREATEKVETKVTVKEGTRNSDMAHYPSTSHYALQQL 349 Query: 340 -MHLANKLELPPNGGGRAAIVLS 361 L + GGR L Sbjct: 350 YADLLDFASKHLRIGGRLVCWLP 372 >gi|328952426|ref|YP_004369760.1| endonuclease-methyltransferase fusion protein [Desulfobacca acetoxidans DSM 11109] gi|328452750|gb|AEB08579.1| endonuclease-methyltransferase fusion protein [Desulfobacca acetoxidans DSM 11109] Length = 1078 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 18/113 (15%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ +Y++L+ + EV ++ TP + L + D L + L DP Sbjct: 369 DLLKKLYQYLVPQ---EVRHKLGEYYTPDWLAELVLNEVGYEGDTL--------KRLLDP 417 Query: 213 TCGTGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAG 258 CG+G FL A+ H+ G +L P Sbjct: 418 ACGSGTFLVLAIQRARQYAHKHRLPPLETAKRIAAHIWGFDLNPLAVIATRTN 470 >gi|258649030|ref|ZP_05736499.1| putative DNA methylase [Prevotella tannerae ATCC 51259] gi|260850656|gb|EEX70525.1| putative DNA methylase [Prevotella tannerae ATCC 51259] Length = 2114 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 57/354 (16%), Positives = 111/354 (31%), Gaps = 50/354 (14%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ IR DP+ G G F A G + Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFARQAGVVDAMEK------------ 155 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEK 307 +L R+ NI + + +L ++ SN PFG Sbjct: 156 -------DLLTARISQALHPYGEGNIFVQNEPFEAIGELEDKDKYDLVTSNIPFG----- 203 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 D ++E+ G+ I + F + N ++ GG A + S L + Sbjct: 204 DFMVYDREYSKGKDTLKRESTRAIHNY---FFVKGLNCIKE----GGLLAFITSQGVLDS 256 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV-- 422 R IRR+L++N + + + LP+ +F T++ + L +L + +E + Sbjct: 257 PRNE----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEGIEQ 312 Query: 423 QLINATDL-WTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYRRIK 479 Q + + + K + + I I R G + + Sbjct: 313 QFVETVSVAKEEGSSVVFKHNSLFVGDWKDISHRTIATERIMGTDPYGRPAWEYRFTGGI 372 Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 + L R++ + + P+ + W + M+Q++ AE Sbjct: 373 EEMAESLRTQLSLEMGQRIDRKL-YETGIPMTKEEWQVRVNEMLQKLGVTVQAE 425 >gi|47177046|ref|YP_015657.1| methylase protein [Oligotropha carboxidovorans OM5] gi|47115437|emb|CAG28490.1| putative methylase protein [Oligotropha carboxidovorans OM5] Length = 1550 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 69/260 (26%), Gaps = 58/260 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S TP +V + + + +P GTG F Sbjct: 9 DYASLARCTQYAHFTPEFIVQAIWS--------GLQRLGWRGGRILEPGIGTGLFPALMP 60 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + + D + G EL+P T + I G + Sbjct: 61 DGLRD---------VSRVTGIELDPVTARIAR------------LLQPRARIIAGD-FVR 98 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F + NPPF + + A F+ + Sbjct: 99 TELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY---------------FIARAID 142 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 L+ G AA V S+ + +S +R + ++ + A + LP F T Sbjct: 143 LLKP----GALAAFVTSAGTM-----DKADSTMRECIAKSADLIAAIRLPEGSFRASAGT 193 Query: 402 NIATYLWILSNRKTEERRGK 421 + + K + G Sbjct: 194 EVVVDVLFFRKHKIGDAEGD 213 >gi|313115794|ref|ZP_07801238.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255] gi|310621879|gb|EFQ05390.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255] Length = 1405 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 78/275 (28%), Gaps = 72/275 (26%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + S T V+ + + +P+ G G F + Sbjct: 923 AAARSSTLNAHYTSPTVIRSIY--------DAVERMGFRSGNILEPSMGVGNFFGMLPDS 974 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGST 281 +AD +G EL+ T + A + + E+ RRD Sbjct: 975 MAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF--------- 1015 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 + + N PFG+ DK +K G S + F Sbjct: 1016 ----------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFFAKA 1050 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--- 398 + GG A V S +S R+ + E + + LP + F Sbjct: 1051 I-----DQARPGGIVAFVT-----SRYTMDSKDSAARKHMAERAALLGAIRLPNNAFRAN 1100 Query: 399 FRTNIATYLWILSNRKT--EERRGKVQLINATDLW 431 T++ + + L R + VQL D + Sbjct: 1101 AGTDVVSDIIFLQKRDRPIDHEPDWVQLGKTEDGF 1135 >gi|329888243|ref|ZP_08266841.1| type II restriction enzyme, methylase subunit [Brevundimonas diminuta ATCC 11568] gi|328846799|gb|EGF96361.1| type II restriction enzyme, methylase subunit [Brevundimonas diminuta ATCC 11568] Length = 893 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 56/211 (26%), Gaps = 51/211 (24%) Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPD----DALFKESPGMIR---- 207 +I+ +I+ E + T + L D + P +R Sbjct: 281 DIFGSMIQSIADEKARSELGMHYTSVPNIMKVLGPLFLDDLDAEIDKAWDKPAALRAQLA 340 Query: 208 -----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-----------------VPHGQ 245 ++DP CG+G FL A + + +G Sbjct: 341 RLSKIRVFDPACGSGNFLVVAYRQMRERELRILKRLGEPDPKKATMQMFSSVSLGQFYGI 400 Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF----- 287 E+ + I +++ R NI ++L D Sbjct: 401 EINDFAAETAKLALFIAEYQANARFADVFGRMPALLPLRDGGNIVCDNSLRTDWESVCPP 460 Query: 288 -TGKRFHYCLSNPPF-GKKWEKDKDAVEKEH 316 Y NPPF G D+ A + + Sbjct: 461 PENGEEVYLAGNPPFVGFNSRSDEQASDMDF 491 >gi|310831462|ref|YP_003970105.1| putative methyltransferase [Cafeteria roenbergensis virus BV-PW1] gi|309386646|gb|ADO67506.1| putative methyltransferase [Cafeteria roenbergensis virus BV-PW1] Length = 1334 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 79/253 (31%), Gaps = 53/253 (20%) Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR-------FGS 168 + F I +E +L I + + N++ L ++ F Sbjct: 832 DKSSFEEQINLIESNNILKNILLEQIHTWWGNKF--NHDILNVFLVLYQKRLKDNKEFNM 889 Query: 169 EVSEGAEDFM----TPRDVVHLATALLLDPDDALFKESP--------------------G 204 S E F +++ L L+ + + Sbjct: 890 VCSRTKEMFYQNISNSKELSKLIDKYLIPQELEKKTNAEVSTPYQLRQEMLDKIPLDFWS 949 Query: 205 MIRTLYDPTCGTGGFLTDAMNH----VADCGSHHKIPPILV----PHGQELEPETHAVCV 256 R +++P G GGFL D ++ + D K ++ + ++ P Sbjct: 950 KKRKVFEPCSGKGGFLMDIVDKFMIGLKDKYPDDKKRYKIIVEKCLYFSDINPT------ 1003 Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKK--WEKDKDA 311 + + +L DP D N +G+TL D + + F + NPP+ +K Sbjct: 1004 -NIFLNKLLLDPYGDYKLNYNEGNTLELDIKEKWGLEGFDAVIGNPPYQAPSLNKKSSKI 1062 Query: 312 VEKEHKNGELGRF 324 + + N + F Sbjct: 1063 LWNKFVNKSINYF 1075 >gi|167763598|ref|ZP_02435725.1| hypothetical protein BACSTE_01973 [Bacteroides stercoris ATCC 43183] gi|167698892|gb|EDS15471.1| hypothetical protein BACSTE_01973 [Bacteroides stercoris ATCC 43183] Length = 1355 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 76/246 (30%), Gaps = 53/246 (21%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP VV L P PG DP+ GTG F++ + Sbjct: 20 NSSLTAFYTPEPVVTAMQESLQLP-----GIRPG---RFLDPSAGTGMFISGLKDVSEVH 71 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + L PE+ D ++IQ + Sbjct: 72 CFEKDKLTGKIL--SSLYPES---------------RVTIDGFQSIQP--------YYNN 106 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELP 349 F SN PFG D+D E + + S S+ + + K Sbjct: 107 YFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFLKGMDT 153 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY--L 407 + GG A + +S + + + +R WL+ + + + + LP +LF L Sbjct: 154 LHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFTDAGTEVGSDL 209 Query: 408 WILSNR 413 +L Sbjct: 210 IVLQKN 215 >gi|88706715|ref|ZP_01104417.1| N6 adenine-specific DNA methyltransferase, N12 class [Congregibacter litoralis KT71] gi|88699036|gb|EAQ96153.1| N6 adenine-specific DNA methyltransferase, N12 class [Congregibacter litoralis KT71] Length = 402 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 48/253 (18%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 +L R + F TP + +L L+ + + +L D G GG L Sbjct: 3 NLCYRQAKNEEDRLGQFSTPPAIANLLAGLVANGINEPV--------SLLDLGAG-GGPL 53 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A++ D GS + Q +A + I+ + + Sbjct: 54 AKALDRCIDLGSSALLEVDCAYTEQ----------LACLPIQG---------EVKVVRSD 94 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG---SML 337 L + + + LSNPP+G ++ + + G P + Sbjct: 95 FLGDEWLPTQSPNVVLSNPPYG-SFKASQRLQKLSRDLGFQ------TPVKGEWMRTDAA 147 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTD 396 FL+ + + G R ++S + + ++ R L+ +E ++ L Sbjct: 148 FLVRAWSFM----ELGTRIGFIVSEAMI----THPSFAKFRSVLVNKLSSLE-VIKLEPT 198 Query: 397 LFFRTNIATYLWI 409 +F R ++ Y+ + Sbjct: 199 IFARAEVSAYMIV 211 >gi|295706878|ref|YP_003599953.1| hypothetical protein BMD_4780 [Bacillus megaterium DSM 319] gi|294804537|gb|ADF41603.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 330 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 98/312 (31%), Gaps = 51/312 (16%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 Y+ + ++ + +F+ + + K L K + + D + Y+ Sbjct: 29 YLEAVAETGENLFQGTILQEELDEVTK-KRLKKEYDSIT-----LDHFEKETIRKAYQLA 82 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 I + E + MTP V + L+ + TL DP G G LT Sbjct: 83 ILKGMKEAVQPNHQ-MTPDAVGLFVSYLV------GKFMAGKDKYTLLDPAVGAGNLLTT 135 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + + +G +++ + N +L Sbjct: 136 ---ILNTHAASIE-----HVYGVDVDDLLLQLTYVN-----ANLQKHGVQLFN---QDSL 179 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + LF + + P G E R G + + Sbjct: 180 -QPLFID-PVDLVVCDLPVGY-------YPNDEGVKEYKVRAEEGHT------YAHHLFI 224 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRT 401 L +GG A++ ++ LF S +S + + LL E +++ I+ LP +F + Sbjct: 225 EQSLRHVKDGGYVVALIPNN--LF----ESEQSHLLQPLLKEEAIVQGIIQLPLSMFKQE 278 Query: 402 NIATYLWILSNR 413 A + +L + Sbjct: 279 QAAKSIMVLQKQ 290 >gi|238020656|ref|ZP_04601082.1| hypothetical protein GCWU000324_00545 [Kingella oralis ATCC 51147] gi|237867636|gb|EEP68642.1| hypothetical protein GCWU000324_00545 [Kingella oralis ATCC 51147] Length = 964 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 102/371 (27%), Gaps = 107/371 (28%) Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRF-GSEVSEG-----------AEDFMTPRDVVHLAT 188 + + +P ++ +IYE + + + F TP+ +V Sbjct: 328 TNTPYDFNYIPVHILGSIYERFLGNIIAIDNGKAAIEQKPEVRKAGGVFYTPKYIVDYIV 387 Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------- 233 + A D CG+G FL + + D + Sbjct: 388 ENTVGKIIAGKNPDYITKLKFADIACGSGSFLIGVYDCLLDYHKNYYNRYPDKAKSAGCH 447 Query: 234 -----------HKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK----- 274 K +G +++ + V + ++ LE + + Sbjct: 448 FDEATGTWVLSIKQKQRILLNNIYGVDIDLQATEVTQLSLFLKLLEDETMASANDMQVLF 507 Query: 275 ----------NIQQGST-------------LSKDL------------------FTGKRFH 293 NI G++ L++D F F Sbjct: 508 ADKILPNLSGNICCGNSLIGYEIMDIMGDELAQDEDIRRKINPFDFQAAFASVFAAGGFD 567 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 + NPP+ K +K+ A K+H + ++ +LFL L+ G Sbjct: 568 AIVGNPPYVKVSDKELLAYFKQHFQHQNYQYDLY--------LLFLERYHALLKEKGLLG 619 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 S F +IR+ LL + I+ +F + T++ + Sbjct: 620 VIVPNTWLQSVTFT--------KIRKHLLGDYRWHKILHGKEHIF-DAVVDTHVLVFEKG 670 Query: 414 KTEERRGKVQL 424 +GK Sbjct: 671 ---SLKGKSLF 678 >gi|218132346|ref|ZP_03461150.1| hypothetical protein BACPEC_00205 [Bacteroides pectinophilus ATCC 43243] gi|217992684|gb|EEC58686.1| hypothetical protein BACPEC_00205 [Bacteroides pectinophilus ATCC 43243] Length = 2178 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 42/312 (13%), Positives = 81/312 (25%), Gaps = 71/312 (22%) Query: 117 DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164 + D T+ ++E KI F G + E+ L+ Sbjct: 909 NIDAIRTLKQIESENRFATPEDQKILSKFVGWGGLSQAFDEENAGWSKEYTELKELLSDE 968 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T ++ + L+ + + +P+ G G F Sbjct: 969 EYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRGGNVLEPSMGIGNFFGSM- 1019 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +G EL+ + + + + NI + Sbjct: 1020 ---------PAPMQRSKLYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1057 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D + + + Sbjct: 1058 TTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY--------------------FLA 1097 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A++ + L IR++L E + + LP F T Sbjct: 1098 KALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1152 Query: 402 NIATYLWILSNR 413 + + L R Sbjct: 1153 EVTADILFLQKR 1164 >gi|330878731|gb|EGH12880.1| putative DNA methylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 928 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 56/200 (28%), Gaps = 41/200 (20%) Query: 157 NIYEHLIRRFGSEVSEGA-EDFMT----------PRDVVHLATALLLDPDDALFKESPGM 205 +I+ +I+ + A T P + L L D+ + Sbjct: 284 DIFGSMIQAVADDEERSALGMHYTSVPNILKVLKPLFLDDLCAQLQAAGDNKSKLLNLRK 343 Query: 206 IR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETH 252 ++DP CG+G FL A H+ D + G EL Sbjct: 344 RMARIRVFDPACGSGNFLVIAYKHMRDIEAEINRRRGESNNKSEIPLTNFRGIELRDFPA 403 Query: 253 AVCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDLF----TGKRFHYC 295 + ++I + D ++ I G+ L D Sbjct: 404 EIARLALIIAEFQCDVLYRGQQDALAEFLPLNAQNWIVCGNALRLDWLSICPPTGTGVKV 463 Query: 296 LSNPPFGKKWEKDKDAVEKE 315 L++ FG + + E E Sbjct: 464 LADDLFGTPLNQTEIDFENE 483 >gi|227496637|ref|ZP_03926913.1| methylase [Actinomyces urogenitalis DSM 15434] gi|226833832|gb|EEH66215.1| methylase [Actinomyces urogenitalis DSM 15434] Length = 944 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 64/236 (27%), Gaps = 62/236 (26%) Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182 I +L + + + +G++ + V ++E + E T Sbjct: 286 EIPQLTQEICTLLVHEVSTGVDW--SGISPTVFGGVFESTL---NPETRRAGGMHYTSPQ 340 Query: 183 VVHLATALLLDPD----------DALFKESPGMIR-----------TLYDPTCGTGGFLT 221 +H L D E R T DP G+G FLT Sbjct: 341 NIHRVIDPLFLDALTAELEGILADTTVTERTRKTRLRRYQDKLASLTFLDPAAGSGNFLT 400 Query: 222 DAMNHVADC--------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + + G + HG E+ +V + I Sbjct: 401 ETFICLRRLENKVLSVLQGPQTALEFEGVGESAIKVQLAQFHGIEINDFAASVARTALWI 460 Query: 262 RRLES-------------DPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPF 301 L++ D + I +G+ L DL R Y + NPPF Sbjct: 461 AELQANAETAEIIQREVEDLPLRDAATIIEGNALDMDWNDLLPASRCSYIMGNPPF 516 >gi|325300205|ref|YP_004260122.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM 18170] gi|324319758|gb|ADY37649.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM 18170] Length = 239 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 28/156 (17%) Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP + L + + + PTCG+G L H Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGGPTCGSGRLLLAYHAH------- 147 Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 P G+++ + V ML+ + +L FT + Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328 + P G + E + E GRF + Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231 >gi|296126364|ref|YP_003633616.1| hypothetical protein Bmur_1327 [Brachyspira murdochii DSM 12563] gi|296126744|ref|YP_003633996.1| hypothetical protein Bmur_1712 [Brachyspira murdochii DSM 12563] gi|296127307|ref|YP_003634559.1| hypothetical protein Bmur_2287 [Brachyspira murdochii DSM 12563] gi|296018180|gb|ADG71417.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563] gi|296018560|gb|ADG71797.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563] gi|296019123|gb|ADG72360.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563] Length = 239 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 49/135 (36%), Gaps = 19/135 (14%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 V+ +++ L ++ F TP ++ + + +P Sbjct: 91 DVLGVLFQEL-----ELKNDFKGQFFTPYELSYCMNKINF----DKSLLESKSFIYCNEP 141 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 G+GG + + V + G + + ++L + + + + + ++ + Sbjct: 142 AAGSGGIVIASCQIVEELGYN---------YAEKLIWNINDLDLMCVYMSFIQLNLIGAS 192 Query: 273 SKNIQQGSTLSKDLF 287 + IQ +TLS ++F Sbjct: 193 AL-IQHCNTLSMEVF 206 >gi|300933682|ref|ZP_07148938.1| GcrY [Corynebacterium resistens DSM 45100] Length = 892 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 61/253 (24%), Gaps = 66/253 (26%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD----DALFKESPGMIRT-------------L 209 E + T + + L + SP Sbjct: 281 SKEARRSDGEHYTSKANIMKTIGPLFLDELRAEADKLVSSPSTSVAALERFRDSLSELVF 340 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHH--------------------KIPPILVPHGQELEP 249 D CG+G FL A + + + I +G EL Sbjct: 341 ADMACGSGNFLLLAYRELRRIETDIIVAIRQRRGETGMSLNIEWEQKLSIGQFYGIELNW 400 Query: 250 ETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDLF----TGKRF 292 + M + +++ + +I G+ L D Sbjct: 401 WPAKIAETAMFLVDHQANKELANAVGRPPERLPIKITAHIVHGNALQLDWADILSASAAK 460 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPP 350 Y NPPF + + + R G IS + + + + Sbjct: 461 TYIFGNPPF-------LGHATRTAEQAQELRDLWGTKDISRLDYVTGWHAKCLDFFKSRE 513 Query: 351 NGGGRAAIVLSSS 363 GR A V ++S Sbjct: 514 ---GRFAFVTTNS 523 >gi|300777180|ref|ZP_07087038.1| res subunit family type III restriction enzyme [Chryseobacterium gleum ATCC 35910] gi|300502690|gb|EFK33830.1| res subunit family type III restriction enzyme [Chryseobacterium gleum ATCC 35910] Length = 1345 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 54/354 (15%), Positives = 110/354 (31%), Gaps = 61/354 (17%) Query: 246 ELEPETHAVCVAGMLIR-RLESDPRRDLSKNI-QQGSTLSKDLFTGKRFHYCLSNPPFGK 303 E+ T + ++ + R ++ I +QG+ + + NPP+G Sbjct: 9 EINETTAKIAK---ILHPEASINVRSFETEFIDEQGNKNEIYQH----YDLIIGNPPYG- 60 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + + +E K IS F+ + L+ G A+VL S Sbjct: 61 EHRGFYKGLGEESK-------------ISKYEDYFVKRSLDVLKHD----GILAMVLPSG 103 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--KTEERRGK 421 L R+ L+N + LPT F T + T + L K Sbjct: 104 WLN-----------RQNNLKNAELVKAFRLPTGAFAGTKVGTDIIFLRKDSQKIAHNISD 152 Query: 422 VQLINATDLWTSIRNEGKK--RRII-NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478 N ++ IR + + R + + L + K + + Sbjct: 153 HFERNPQNILGEIREKPNRFGRMELYVHGNLDEALSQLQRLQEVKKTERIGN-------- 204 Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538 L + D + +I K S L ++ +D ++ + + Sbjct: 205 -----LFEDLLYDNLEPEKQADNIVSAKKSDLGKTAEIDFVEVQNKIRAVLSTLNDIKFK 259 Query: 539 SI----KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588 S+ ++++ K L+ + S++ +AD V + + D+ Sbjct: 260 SLAILKETDKYKKLQGQLSENPKKFNQEQLSEILEKADRVIQSH-QTKKDSEYR 312 >gi|160902728|ref|YP_001568309.1| hypothetical protein Pmob_1273 [Petrotoga mobilis SJ95] gi|160360372|gb|ABX31986.1| hypothetical protein Pmob_1273 [Petrotoga mobilis SJ95] Length = 1125 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 91/330 (27%), Gaps = 95/330 (28%) Query: 171 SEGAEDFMTPRDVVHLATAL----------LLDPDDALFKESPGMIR-----TLYDPTCG 215 + F TP+ +V L + + DP CG Sbjct: 187 NGVISQFYTPKWIVDYLVENTLGKYYGRNGLTAHKEDSLTAGDDKGVDLEDVKIIDPACG 246 Query: 216 TGGFLTDAMNHVADCGSHHKIPP--------ILVPHGQELEPETHAVCVAGMLIRRLESD 267 G F+ + + + + +G +++ + + ++ LE Sbjct: 247 CGNFVIGVYDKLREMYQNKGYDDALIPKLIITKNLYGIDIDENAVEITNLLLRLKALEDG 306 Query: 268 PRRDLSKNIQ---QGSTLSKDLFTGKR--------------------------------- 291 + NI + ++L + ++ Sbjct: 307 AYERIETNIVAVPKENSLKRPEGGSRKGSLTTNEEGQNEYLKKFEKIGSLMRTEDVLSLK 366 Query: 292 -------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + L+NPP+ D D K + N + F Sbjct: 367 ESGINDEPLKKALDILSLKYDVVLTNPPYLDS--SDYDFELKRYINEDYSEF------KK 418 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + F+ +++ G ++ + +F G + RR++L+N IE +V Sbjct: 419 NLYACFIKKSCELVKMD----GFVGMITPQTFMFIGSYE----KTRRFILDNFQIERLVH 470 Query: 393 LP-TDLFFRTNIATYLWILSNRKTEERRGK 421 +F + T +++L K K Sbjct: 471 FGLGGVFDNALVDTAMFVLRKSKNSLTAHK 500 >gi|239631870|ref|ZP_04674901.1| adenine-specific DNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526335|gb|EEQ65336.1| adenine-specific DNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 336 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L ++ +E+ S N + E L + P+ Sbjct: 22 QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + ++ + +TP + LAT ++ +F + Sbjct: 75 -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D GTG L MN + + + +G + + AV +++L+ D Sbjct: 125 VADLAVGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327 L LF +S+ P G ++ E G Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVGYYPVDERAKQFETAAAKGH------- 222 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S L + L+ G + S +F +G + WL ++ Sbjct: 223 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 270 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 + ++ LP D F L +L + +R K Sbjct: 271 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304 >gi|191637971|ref|YP_001987137.1| Putative modification methylase LaaG [Lactobacillus casei BL23] gi|190712273|emb|CAQ66279.1| Putative modification methylase LaaG [Lactobacillus casei BL23] gi|327382047|gb|AEA53523.1| Snf2 family protein [Lactobacillus casei LC2W] gi|327385201|gb|AEA56675.1| Snf2 family protein [Lactobacillus casei BD-II] Length = 336 Score = 43.4 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L ++ +E+ S N + E L + P+ Sbjct: 22 QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + ++ + +TP + LAT ++ +F + Sbjct: 75 -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D GTG L MN + + + +G + + AV +++L+ D Sbjct: 125 VADLAVGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327 L LF +S+ P G ++ E G Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVGYYPVDERAKQFETAAAKGH------- 222 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S L + L+ G + S +F +G + WL ++ Sbjct: 223 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 270 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 + ++ LP D F L +L + +R K Sbjct: 271 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304 >gi|126434836|ref|YP_001070527.1| hypothetical protein Mjls_2250 [Mycobacterium sp. JLS] gi|126234636|gb|ABN98036.1| hypothetical protein Mjls_2250 [Mycobacterium sp. JLS] Length = 929 Score = 43.0 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 53/212 (25%), Gaps = 54/212 (25%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPD-------DALFKESPGMIRTLY---------D 211 ++ + T + + L + K+ G++ L+ D Sbjct: 313 AQTRRELGEHYTSEENILKTLNPLFLDELRAEFDRARTMKDEKGVLTRLWKRLGDIRYMD 372 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEPET 251 P CG G F+ A + D +G E++ Sbjct: 373 PACGCGNFIIVAFRELRDLELRIMERLQELAGASQLAFDPTLALKVTLDHFYGIEIDEWP 432 Query: 252 HAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTLSKDLF---TGKRFHYC 295 + M + + D + NI G+ L Sbjct: 433 ARIAETAMFLVDRQCDLKLKERFGEAPQRLPIQTQANIAVGNALQLPWHQHCPVSESVII 492 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 NPPF K++ A E GR G Sbjct: 493 AGNPPF--HGPKERSADETADLRTVWGREYDG 522 >gi|237755453|ref|ZP_04584077.1| type IIS restriction enzyme R and M protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692385|gb|EEP61369.1| type IIS restriction enzyme R and M protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 1203 Score = 43.0 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 80/296 (27%) Query: 41 LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100 L R E ++ ++ + F N + L Sbjct: 290 LYRYEDKFLISKEEAKKLFEDI----------------PFINGGLFDC--LDKDKV---- 327 Query: 101 ESYIASFSDNAKA---IFEDFDFSSTIAR-------LEKAGLLYKICKNFSGIELHPDTV 150 YI FS N K I ++ F+ L K + + D Sbjct: 328 --YIDGFSRNEKKQAKISDELFFNEKGKTVDLSKYGLSKNAEVRGLINILKSYNFTTDEA 385 Query: 151 PDRV---------MSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATAL------- 190 + ++E+L+ + E + + + TPR++V Sbjct: 386 TPIDQEIALDPELLGKVFENLLASYNPETNTTARKATGSYYTPREIVDYMVEESLREYLK 445 Query: 191 ------------LLDPDDALFKESPGMIR---------TLYDPTCGTG----GFLTDAMN 225 L D + S + + + DP CG+G G L + Sbjct: 446 TKVPEAENILDDLFSYSDNELEISDDLRKKLIQAIDQVKIIDPACGSGAFPMGILHKLVF 505 Query: 226 HVADCGSHHKIPPILVPHG-QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 + +K+ + ++ E + ++ L ++ + ++I Sbjct: 506 LLQKLDPSNKVWYEIQVDRIKKESKEALEIAKDENTLKELLNEVKEHFDESINYPD 561 >gi|188527680|ref|YP_001910367.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470] gi|188143920|gb|ACD48337.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470] Length = 2803 Score = 43.0 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 99/329 (30%), Gaps = 69/329 (20%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F S + + TP L + D L + + +++P+ GTG F+ Sbjct: 958 EFRRAYSSTRDAYYTP----KLVIDSIYQGLDQLGFNNDNHQKEIFEPSLGTGKFI---- 1009 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +H G EL+P + + L N +T + Sbjct: 1010 -------AHAPSDKNYRFMGTELDPISANISK--------------FLYPNQVINNTALE 1048 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + + + + NPP+G + E +++ FL Sbjct: 1049 NHQFYQEYDAFVGNPPYGSHKIYSSNDKELSNESVHNY---------------FLGKAIK 1093 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 +L+ G A V+SS + S ++R + +N + LP +F T Sbjct: 1094 ELKDD----GIGAFVVSSWFM-----DSKNPKMREHIAQNTTFLGAIRLPNSVFKATGAE 1144 Query: 405 TYLWILSNRKTEERRGKVQLINATDLW----------TSIRNEGKKRRIINDDQRRQILD 454 I+ +K + A + T + + + +I++ Sbjct: 1145 VSSDIVFFKKCVDEATNQSFTKAMPYYDKIIDSLDNDTLFALQNNRFDSFTPSDQLKIVN 1204 Query: 455 I---YVSRENGKFSRML---DYRTFGYRR 477 + + K R D FGYR Sbjct: 1205 AIASHFGFKQEKLQRWYEKIDTANFGYRE 1233 >gi|327314274|ref|YP_004329711.1| hypothetical protein HMPREF9137_2047 [Prevotella denticola F0289] gi|326945347|gb|AEA21232.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 1022 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 48/187 (25%) Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT------------ 188 + + + ++ I+E+L+ E ++ F TP+++V Sbjct: 369 NDPDDAEVGIDPEMLGRIFENLL-----EDNKDKGAFYTPKEIVQYMCRESLIAYLQTGQ 423 Query: 189 ---------ALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMNH------- 226 + D G++ + DP G+G F + Sbjct: 424 TEEDRERIRRFVTTHDGEQLDGLKGVLDQKLRDVKICDPAIGSGAFPMGLLRELFLCRAA 483 Query: 227 ----VADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQ 277 VA+ + K +G ++E + + + + + N I Sbjct: 484 IEPDVAENAADIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIVDEKSPEALPNLDFKIM 543 Query: 278 QGSTLSK 284 QG++L + Sbjct: 544 QGNSLLE 550 >gi|261839299|gb|ACX99064.1| type II R-M system methyltransferase [Helicobacter pylori 52] Length = 545 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 43/235 (18%) Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178 +L K L + + I + + + + + YE + + Sbjct: 58 NKLNKYANKSLKSVHNHQELILKYLKILENSFDLEKLGSYYEE---ELSNTTRNLEGIYY 114 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP ++V L P D ++ DP G+G F+ A+ Sbjct: 115 TPNEIVE---QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFK 157 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G + + A+ +R++ D NI Q T +F +N Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTN 209 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+GKK+ +++ K+H N L + D + LF + N L+ + G Sbjct: 210 PPWGKKYNQNQKENFKQHFN---------LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|77163545|ref|YP_342071.1| hypothetical protein Noc_A0028 [Nitrosococcus oceani ATCC 19707] gi|254436402|ref|ZP_05049907.1| hypothetical protein NOC27_3374 [Nitrosococcus oceani AFC27] gi|76881859|gb|ABA56541.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207087936|gb|EDZ65210.1| hypothetical protein NOC27_3374 [Nitrosococcus oceani AFC27] Length = 916 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 49/195 (25%), Gaps = 48/195 (24%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDPTC 214 + + T + L R ++DP Sbjct: 297 EKSRDSLGQHYTSVPNIMKVIRPLFLDKLYADLHKSKGKRRQLEALLVRLARIWVFDPAM 356 Query: 215 GTGGFLTDAMNHVADC-------------GSHHKIPPI----LVPHGQELEPETHAVCVA 257 G+G FL A + +I +G E++ H + Sbjct: 357 GSGNFLIIAYKELRRLEMATFRSLQAMSGSGQQEIFMSGIQLSQFYGIEIDDFAHEIAQL 416 Query: 258 GMLIRRLESDPRRD-------------LSKNIQQGSTLSKDLFT-----GKRFHYCLSNP 299 + + + + + N+ QG++L D G Y NP Sbjct: 417 SLWLVEHQMNTLFVKEFGHAEPVLPLKDTANLVQGNSLRMDWQKVCPNDGSAEIYVCGNP 476 Query: 300 PFGKKWEKDKDAVEK 314 PF ++ ++ Sbjct: 477 PFIGHGSRENSQLDD 491 >gi|227875627|ref|ZP_03993766.1| helicase [Mobiluncus mulieris ATCC 35243] gi|227843812|gb|EEJ53982.1| helicase [Mobiluncus mulieris ATCC 35243] Length = 1693 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 76/304 (25%), Gaps = 36/304 (11%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165 S + I + + + L K + + D +M +Y+ + Sbjct: 850 SHAMQGILDRLAENQVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 907 Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224 ++ + TP VV + F + G + +P GTG F+T + Sbjct: 908 AFPKLGDRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 967 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278 S E+ ++ + + + D I Sbjct: 968 QSGLISPSQLDHKYRHEIFANEIVLLSYYIASINIEQVYREIRLEQGIDEGYVEFPGITL 1027 Query: 279 GSTLS-----------KDLFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318 T +D + + NPP+ +K D + Sbjct: 1028 TDTFQLAEGQNQIPCIRDFQANLKRVQAQRAADIQVVVMNPPYSAGQKKANDNNQNLKYP 1087 Query: 319 GELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 GR S + + L+ G A V +SS + A Sbjct: 1088 WLDGRIADTYAARSSATNKNSLYDSYYRALRWATDRIGQEGVIAFVSNSSFIDGNTADGV 1147 Query: 374 ESEI 377 Sbjct: 1148 RLTW 1151 >gi|282901240|ref|ZP_06309168.1| hypothetical protein CRC_02639 [Cylindrospermopsis raciborskii CS-505] gi|281193855|gb|EFA68824.1| hypothetical protein CRC_02639 [Cylindrospermopsis raciborskii CS-505] Length = 963 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 3/141 (2%) Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 F EL D + + R E + + TP+ + L Sbjct: 540 IDEFKQEELVIDWEKGEFRKHAKGKFLFRLAGRDREKSASYYTPQSLTKCLVKYALKELL 599 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL---EPETHA 253 + + T+ +P G+G FL +A++ +A+ K + E + Sbjct: 600 EGKQADDILELTICEPAMGSGAFLNEAIDQLAETYLERKQKEKGELISHKQAMREQQKIK 659 Query: 254 VCVAGMLIRRLESDPRRDLSK 274 + +A + ++ +P Sbjct: 660 MLLADRNVFGIDKNPIAMELA 680 >gi|172036682|ref|YP_001803183.1| hypothetical protein cce_1767 [Cyanothece sp. ATCC 51142] gi|171698136|gb|ACB51117.1| hypothetical protein cce_1767 [Cyanothece sp. ATCC 51142] Length = 517 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 77/247 (31%), Gaps = 44/247 (17%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + F TP V + T + + +T+ DP G G F Sbjct: 18 NYRKEYGQFFTPSLVAKMMTKWVTEN----------KPQTILDPAFGLGVFY-------- 59 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 + S K+ E++ + + + L+ I Sbjct: 60 EEISQIKLQYQWHFTAYEIDDNILSYLDNIENNNNITILNQDYLASEINYYDA------- 112 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 + NPP+ + + ++G+ G S+ + +FL+ +L Sbjct: 113 ------IICNPPYMRFQKFINRHDILPKIEQQIGKKLGGY---SNIASIFLIKALQQL-- 161 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATY 406 N GR A +L G EI++ L+EN L++ I+ D+F Sbjct: 162 --NLNGRLAFILPFEFFNTGYG----KEIKQTLIENYLLKQIIIFANEKDIFPDATTTIC 215 Query: 407 LWILSNR 413 + + N Sbjct: 216 ILLCQND 222 >gi|32479387|ref|NP_862240.1| GcrY [Corynebacterium striatum] gi|9945797|gb|AAG03371.1| GcrY [Corynebacterium striatum] Length = 952 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 61/253 (24%), Gaps = 66/253 (26%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD----DALFKESPGMIRT-------------L 209 E + T + + L + SP Sbjct: 341 SKEARRSDGEHYTSKANIMKTIGPLFLDELRAEADKLVSSPSTSVAALERFRDSLSELVF 400 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHH--------------------KIPPILVPHGQELEP 249 D CG+G FL A + + + I +G EL Sbjct: 401 ADMACGSGNFLLLAYRELRRIETDIIVAIRQRRGETGMSLNIEWEQKLSIGQFYGIELNW 460 Query: 250 ETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDLF----TGKRF 292 + M + +++ + +I G+ L D Sbjct: 461 WPAKIAETAMFLVDHQANKELANAVGRPPERLPIKITAHIVHGNALQLDWADILSASAAK 520 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPP 350 Y NPPF + + + R G IS + + + + Sbjct: 521 TYIFGNPPF-------LGHATRTAEQAQELRDLWGTKDISRLDYVTGWHAKCLDFFKSRE 573 Query: 351 NGGGRAAIVLSSS 363 GR A V ++S Sbjct: 574 ---GRFAFVTTNS 583 >gi|302346800|ref|YP_003815098.1| hypothetical protein HMPREF0659_A7061 [Prevotella melaninogenica ATCC 25845] gi|302150613|gb|ADK96874.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 1537 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 40/242 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ + +R DP+ G G F A G + + Sbjct: 111 IVSAISDALASTNLQVRRCLDPSMGIGAF---AEAFAKQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + ++ + +L ++ SN PFG + Sbjct: 166 LHPYGKGNIFVQSEPFEAIGELED--------------KDKYDLITSNIPFG-----EFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYSKGKDTLKRASTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ +F T++ + L +L + +E + Q + Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315 Query: 426 NA 427 Sbjct: 316 ET 317 >gi|239826790|ref|YP_002949414.1| Eco57I restriction endonuclease [Geobacillus sp. WCH70] gi|239807083|gb|ACS24148.1| Eco57I restriction endonuclease [Geobacillus sp. WCH70] Length = 1144 Score = 43.0 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 20/154 (12%) Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 ++ ++NPP+ K+ ++ SD F+ Sbjct: 471 KYEVVVTNPPYHNKYNPVLKKFMNDNYKDY----------KSDLYSAFIYRCTQM----T 516 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410 G AA++ F S ++R++++EN I +++ L F + +++ Sbjct: 517 VENGFAALMTP----FTWMFISSHEKLRKYIIENQSISSLIQLEYSAFTEATVPICTFVI 572 Query: 411 SNRKTEERRGKVQL--INATDLWTSIRNEGKKRR 442 N+ ++L DL E K Sbjct: 573 QNQNRTSIGEYIRLEEFKGADLQPIKVKEAVKNN 606 >gi|298207444|ref|YP_003715623.1| Type II restriction enzyme, methylase subunit [Croceibacter atlanticus HTCC2559] gi|83850080|gb|EAP87948.1| Type II restriction enzyme, methylase subunit [Croceibacter atlanticus HTCC2559] Length = 1020 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 14/119 (11%) Query: 129 KAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVS------------EGA 174 GL +C + S E + ++ +IYE + + S + Sbjct: 321 DKGLFQDLCYDISSKESPYNFNSIPVHILGSIYERFLGKVVSIEGGKVDIIQKPEVRKAG 380 Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F TP+ +V + + D +CG+G FL ++ D + Sbjct: 381 GVFYTPKYIVDYIIDKSVGKLIKGKTPKEIDKLSFADISCGSGSFLIGVYEYLIDYHKN 439 >gi|227513150|ref|ZP_03943199.1| adenine-specific methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083725|gb|EEI19037.1| adenine-specific methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 356 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 95/336 (28%), Gaps = 51/336 (15%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137 F++ + + ++ +S I + D ++ E A + +I Sbjct: 29 ERFFSVLNETTEIVQKQKDQSYFDSLIE-----VLDTVQSNDVNALDLTDENAKKVSRIY 83 Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 F D + + I + V ++ D + ++ Sbjct: 84 SKFDR-----DKYDSETLRKAIQMAILK-AIRVDRIQANYQITPDTIANIVGYIISGIFN 137 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 K ++ DP GTG LT N + I G E + + Sbjct: 138 GQKR-----LSMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIENDDAMFELAAG 187 Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 I+ + ++ + E+ Sbjct: 188 SFDIQHIHAELF-----------------HEDAIQNVLAPVVDIAVSDLPVGYYPIDENT 230 Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 G R +DG S + + + ++ GG L S +F S + Sbjct: 231 KGFNTR-------SNDGHSYVHHLLIEFAMDHVKKGG--YGFFLVPSQIF---KTSEAKQ 278 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 + +W+ N ++ ++ LPT+LF + IL N Sbjct: 279 LLKWMQGNVYLQGLLNLPTELFQNKASQKAIMILQN 314 >gi|315149232|gb|EFT93248.1| N-6 DNA Methylase [Enterococcus faecalis TX0012] Length = 335 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKNIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSETLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|254520298|ref|ZP_05132354.1| modification methylase [Clostridium sp. 7_2_43FAA] gi|226914047|gb|EEH99248.1| modification methylase [Clostridium sp. 7_2_43FAA] Length = 587 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 92/312 (29%), Gaps = 45/312 (14%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFS 108 + K + + + +K G E ++ L ++ N+++YI Sbjct: 274 QELTTKEPDDDQIEVAIAALMKAEGLK---PKEKTIGELLDKASKELKEENIDTYILDAQ 330 Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + R +K L + F IE + +P + + E + F Sbjct: 331 LLLGNVLAKDKLYIITNR-DKNVSLKDEKEYFELIEKRKNKMPIKYILGETEFMGLDFNV 389 Query: 169 EVSEGAEDFMTPRDVVHLATA--LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E + PR + L + ++ + D G+G N+ Sbjct: 390 EEG-----VLIPRGDTEILVEEVLSIINEEDELN--------VCDLCSGSGAIGISIANY 436 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 + V ++ LES + S L + + Sbjct: 437 RKKINVEE----------IDFYEVPEKVTKKNIIKHGLESRVKFIKS------DLLKEPI 480 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 GK++ +SNPP+ K + + + K E G D ++F + + Sbjct: 481 NQGKKYDVIVSNPPYIK--ADEISNLMDDVKKYEPHTALDG----GDDGLVFYKRIIEES 534 Query: 347 ELPPNGGGRAAI 358 + N G A Sbjct: 535 KTTLNNEGVLAF 546 >gi|227535492|ref|ZP_03965541.1| DNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186902|gb|EEI66969.1| DNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 342 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L ++ +E+ S N + E L + P+ Sbjct: 28 QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 80 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + ++ + +TP + LAT ++ +F + Sbjct: 81 -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 130 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D GTG L MN + + + +G + + AV +++L+ D Sbjct: 131 VADLAVGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 185 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327 L LF +S+ P G ++ E G Sbjct: 186 F--------HQDALDNLLFKD--IDVVVSDLPVGYYLVDERAKQFETAAAKGH------- 228 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S L + L+ G + S +F +G + WL ++ Sbjct: 229 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 276 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 + ++ LP D F L +L + +R K Sbjct: 277 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 310 >gi|303241340|ref|ZP_07327844.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302591073|gb|EFL60817.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 2109 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 11/127 (8%) Query: 35 ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-----YNTSEYSLS 89 I PF L+ ++ L + + N E + G F + S Sbjct: 1137 IFPFNFLKYVQSNLSSLLRTFLQMFSEELDDNAKEEIRIFAQGNKFKESPMHKKVLESFE 1196 Query: 90 TLGSTNTRNNLESYIASFSDNAKAIFEDFD---FSSTIARLE-KAGLLYKICKNFSGIEL 145 +L R+ L I + K + + + I L+ + L + KN + E+ Sbjct: 1197 SLKQQ--RDALAESIKQLNKLIKELEKKPKDSSYEKEIKELKSEKNALGNVVKNLNNKEV 1254 Query: 146 HPDTVPD 152 + Sbjct: 1255 FNFLSDE 1261 >gi|269929046|ref|YP_003321367.1| hypothetical protein Sthe_3145 [Sphaerobacter thermophilus DSM 20745] gi|269788403|gb|ACZ40545.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM 20745] Length = 1007 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 68/239 (28%) Query: 92 GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151 + R+++ S + +F+ F+F + ++ L V Sbjct: 308 DDDDMRSDIVVPDESIHLILRDLFDRFNF-----TITESTPL-----------DVEVAVD 351 Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA--------------------TALL 191 ++ ++E L+ + + TP+ +V Sbjct: 352 PEMLGKVFEELV-----TGRHESGSYYTPKPIVAFMCREALKGYLGSILPAEPAAAIERF 406 Query: 192 LDPDDALFKESPGMI------RTLYDPTCGTGGFLTDAMNHVADC--------------- 230 ++ D P + + DP G+G +L ++ + D Sbjct: 407 VEEHDPGGLRDPEAVLDALRRVRVCDPAVGSGAYLLGMLHELLDLRQSLFQAQRLDPIST 466 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIR------RLESDPRRDLSKNIQQGSTLS 283 +G +L+P + + + E P +L I+QG ++ Sbjct: 467 YQRKLEILRNNLYGVDLDPFAVNIAQLRLWLSLAVEFEGSEPQPLPNLDFKIEQGDSIL 525 >gi|311112633|ref|YP_003983855.1| GcrY protein [Rothia dentocariosa ATCC 17931] gi|310944127|gb|ADP40421.1| GcrY protein [Rothia dentocariosa ATCC 17931] Length = 948 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 37/167 (22%) Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--- 241 L D + DP CG G FL + + + + Sbjct: 370 RLIRNKSTSLKDFDNFLNNLSTHVFCDPACGGGNFLNLTYAKLREIETDVLVEKRNRGGE 429 Query: 242 -----------------PHGQELEPETHAVCVAGMLIRRLESDPRR-------------D 271 +G E+ + M + +++ R + Sbjct: 430 FTASLDISIDQRLSINQFYGFEINWWAAKIAETAMFLVDHQANLRLAQALGDAPNRLPIE 489 Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314 ++ +I + L D K Y NPPF + + + Sbjct: 490 IAAHIIHDNALRLDWKKAIPEPKGKTYIFGNPPFLGDHTRTAEQLAD 536 >gi|265757018|ref|ZP_06090880.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233517|gb|EEZ19146.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1132 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 48/195 (24%) Query: 127 LEKAGLLYKICKNFSGIELHPD-----TVPDRVMSNIYEHL--IRRFGSEVSEGAEDF-- 177 L A L++I F+ IE D D ++ +YE+ + + + S ++ Sbjct: 71 LPTADELFEIITAFNEIEQDADCGADIWKGDDILGWLYENFNTVEKLALKDSGDKTEYDK 130 Query: 178 -------MTPRDVVHLATA-------LLLDPDDALFKESPGMIR---------------- 207 TP+ VV L + PD + G ++ Sbjct: 131 VSLQSQVYTPQWVVKFLVDNTLGKMYLEMYPDSNFIYDENGKVKYLIANAPISQMRHPKK 190 Query: 208 ----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 L DP CG+G FL A D + +++ + + Sbjct: 191 LEELKLIDPACGSGNFLIYAFLLFYDLYLNQIDQYDADYSRRDI---PKLIVENNLY--G 245 Query: 264 LESDPRRDLSKNIQQ 278 ++ D R I Sbjct: 246 VDLDERAVQLTQIAL 260 >gi|257440759|ref|ZP_05616514.1| putative Type II restriction enzyme, methylase subunit [Faecalibacterium prausnitzii A2-165] gi|257196733|gb|EEU95017.1| putative Type II restriction enzyme, methylase subunit [Faecalibacterium prausnitzii A2-165] Length = 1189 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 4/130 (3%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I R E + + TP + L + T+ +P G+ FL Sbjct: 127 FIYRLAGREREKSASYYTPEVLTKCLVKYALKELLKDKSADDILHLTICEPAMGSAAFLN 186 Query: 222 DAMNHVADCGSHHKIPPILVP--HGQELEP-ETHAVCVAGMLIRRLESDPRRDLSKNI-Q 277 +A+N +A+ K + + + +A + ++ +P + Sbjct: 187 EAINQLAEAYISRKEQETGEIIGYEDRFNQLQKVKMFIADRNVYGVDLNPVAVELAEVSL 246 Query: 278 QGSTLSKDLF 287 +T+ + F Sbjct: 247 WLNTIYPNGF 256 >gi|218533473|ref|YP_002424288.1| methylase [Methylobacterium chloromethanicum CM4] gi|218525776|gb|ACK86360.1| methylase [Methylobacterium chloromethanicum CM4] Length = 937 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 32/130 (24%), Gaps = 34/130 (26%) Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------------VPHGQEL 247 +DP CG G FL A + + +G E+ Sbjct: 356 GFRFFDPACGCGNFLIIAYRELRALETDVLKELNPSGQRTLLDVATLSKVDVGQFYGIEI 415 Query: 248 EPETHAVCVAG--MLIRRLESDPRRD-----------LSKNIQQGSTLSKDL---FTGKR 291 + M+ + + + S +I G L D Sbjct: 416 GEFPARIAEVALWMMDHIMNNRLSLEFGQAYARIPLKSSPHISCGDALEVDWTKVLPPAE 475 Query: 292 FHYCLSNPPF 301 + NPPF Sbjct: 476 CSFVFGNPPF 485 >gi|67920716|ref|ZP_00514235.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501] gi|67856833|gb|EAM52073.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501] Length = 119 Score = 43.0 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 6/103 (5%) Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429 ++ I+ LL + IV LP +F T+I T L + E + Sbjct: 7 EGVKTRIKEKLLSECNLHTIVRLPNGVFNPYTSIKTNLLFFTKG---ESTKNIWFHE--H 61 Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472 + K + I ++ + +RE +F+ + Sbjct: 62 PYPPGYKSYSKTKPIKIEEFAAEKAWWNNREENEFAWCVSIEE 104 >gi|317482924|ref|ZP_07941929.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324 [Bifidobacterium sp. 12_1_47BFAA] gi|316915613|gb|EFV37030.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324 [Bifidobacterium sp. 12_1_47BFAA] Length = 1899 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 65/252 (25%), Gaps = 59/252 (23%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + TP VV L + +P CGTG F+ Sbjct: 69 EYTQARASTLTAYYTPGPVVKAMWDALDIG---------SAPIQVLEPGCGTGNFMAGIP 119 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 ++ G EL+P + + A + I Sbjct: 120 ENIKAN-----------VSGVELDPISARIAAA------------LNPDATILNAD--LA 154 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 D F + N P+ D + G R F+ + Sbjct: 155 DCTIHPGFDLTIGNVPYSGDISLDYRTTD-----GGTSRLPLH-------DY-FIERSVD 201 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 L GG A ++ S L +R L + V LP+ F T Sbjct: 202 ALRP----GGVAMLLTSRYTL-----DKRSETMRADLARKAELVGAVRLPSSTFARQAGT 252 Query: 402 NIATYLWILSNR 413 T + +L R Sbjct: 253 EAVTDVLVLRRR 264 >gi|257451606|ref|ZP_05616905.1| hypothetical protein F3_00982 [Fusobacterium sp. 3_1_5R] gi|317058174|ref|ZP_07922659.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313683850|gb|EFS20685.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 211 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 22/160 (13%) Query: 118 FDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 D + I +L LL + ++ + + Y+ F SE Sbjct: 1 MDINKQIDQLIGVTESYKAPEKLLEIVLDYHRLKKVTLEMLKAHNYKMDYDWFHEYFQSE 60 Query: 170 VS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + + TP + +L L + +Y+P CGTGG + N Sbjct: 61 HADRKNNKQDFTPNSIGNLLIRL-----------NRKTEGIIYEPACGTGGIIIQNWNVA 109 Query: 228 ADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLES 266 + P + +EL T + + +R + + Sbjct: 110 REQYGILHFNPNDRLYICEELTDRTIPFLLFNLALRGVNA 149 >gi|317505739|ref|ZP_07963616.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663144|gb|EFV02934.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 290 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 55/228 (24%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---- 232 F T +V L D IR DP+ G G F V + Sbjct: 105 FYTDTRIVSAIAEALTITDVE--------IRQCLDPSAGMGAFAEIFAKRVGMVDAMEKD 156 Query: 233 --HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 +I + P+GQ +++R+ + +L Sbjct: 157 LLTARISQSIHPYGQG-----------NIIVRQAPFESIGELED--------------KD 191 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 ++ SN PFG D ++E+ G+ I + + K Sbjct: 192 KYDLVTSNIPFG-----DFMVYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCI 239 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 GG A + S L + R IRR+L++N + + + LP+ LF Sbjct: 240 KEGGLLAFITSQGVLDSPRNE----AIRRYLMQNSRLISALRLPSSLF 283 >gi|332361300|gb|EGJ39104.1| SNF2 family protein [Streptococcus sanguinis SK1056] Length = 2273 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 68/276 (24%), Gaps = 59/276 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T ++ + + DP+ GTG F Sbjct: 667 KEYTDMKQSSLTAYYTDPHLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 718 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 H+ + +G EL+ T + + +I+ Sbjct: 719 PKHLRENSE---------LYGVELDTITGVIAK------------YLHPNSHIEV-KGFE 756 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F F LSN PF + R+ D + + Sbjct: 757 TIAFNDNSFDLILSNVPFA-------------NIRIVDSRY--------DKPYMIHDYFV 795 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K + GG+ AI+ G I + + E V LP F Sbjct: 796 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDSAFKAIAG 850 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436 TN+ T + + + + + Sbjct: 851 TNVTTDMLFFQKHMDKGYVADDLAFSGSIRYDKDDR 886 >gi|110669158|ref|YP_658969.1| adenine-specific DNA methyltransferase [Haloquadratum walsbyi DSM 16790] gi|109626905|emb|CAJ53374.1| adenine-specific DNA methyltransferase [Haloquadratum walsbyi DSM 16790] Length = 455 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 46/231 (19%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 TP + L P + P CG G F++ + Sbjct: 3 GHVPTPDRLADKMVEKLFRD------NPPEDGERILYPGCGRGPFISAVHRY-----CDS 51 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P+ E++PE + +D + D +F Y Sbjct: 52 NDFPVPEGVAVEIDPELYEDAR----------KRHKDKEVEFLERD-FLTDSDGLDKFEY 100 Query: 295 CLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352 L NPP+ + E+D+ + GRF + LF + L + Sbjct: 101 VLGNPPYIPIEGLEEDEKGRYRREFETAEGRFDLYV--------LFFEQAIDLL----SS 148 Query: 353 GGRAAIVLSS--------SPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 GGR V + L A SG EI ++ D E +V PT Sbjct: 149 GGRLCFVTPEKFEYTETTAALRRVLASSGVEEI--HHVDEDSFEGLVTYPT 197 >gi|110347115|ref|YP_665933.1| methyltransferase type 11 [Mesorhizobium sp. BNC1] gi|110283226|gb|ABG61286.1| Methyltransferase type 11 [Chelativorans sp. BNC1] Length = 1516 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 50/217 (23%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + +P GTG F + D + G EL+P T + Sbjct: 7 RVLEPGIGTGLFPALMPEGLRD---------VSHVTGIELDPVTARIAR----------- 46 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 I G ++ F + NPPF + + A Sbjct: 47 -LLQPQARIITGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSLSLRLHDY----- 98 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 F+ + L+ G AA V S +G + R + ++ + Sbjct: 99 ----------FIARSIDLLKP----GAFAAFVTS-----SGTMDKADVCAREHIAKSADL 139 Query: 388 EAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 A + LP F TN+ + RK E G+ Sbjct: 140 IAAIRLPEGSFRADAGTNVVVDILFFRKRKAGEPEGE 176 >gi|327314381|ref|YP_004329818.1| helicase C-terminal domain-containing protein [Prevotella denticola F0289] gi|326946015|gb|AEA21900.1| helicase C-terminal domain protein [Prevotella denticola F0289] Length = 2093 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 48/232 (20%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 +++ IR DP+ G G F ++ + +I + P+G Sbjct: 111 IVNAIADALSSVDVPIRRCLDPSAGMGAFTETFAKKAGMVDAMEKDLLTARISQAIHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 Q +++R++ + + ++ SN PFG Sbjct: 171 QG-----------NIIVRQVPFEAIGEFED--------------KDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D++ + + K+ + + F+ K GG A + S Sbjct: 206 MVYDREYSKGKGKDILKRESTRAIH-----NYFFV-----KGLDCIKEGGLMAFITSQGV 255 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 L + + IRR+L++N + + + LP+ +F T + + L +L + Sbjct: 256 LDSPKNE----AIRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQ 303 >gi|325859541|ref|ZP_08172679.1| hypothetical protein HMPREF9303_0400 [Prevotella denticola CRIS 18C-A] gi|325482944|gb|EGC85939.1| hypothetical protein HMPREF9303_0400 [Prevotella denticola CRIS 18C-A] Length = 1509 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 40/242 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ + +R DP+ G G F A G + + Sbjct: 111 IVSAISDALASTNLQVRRCLDPSMGMGAF---AEIFARQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + + +R + +L ++ SN PFG D Sbjct: 166 LHPYGKSNVFVRNEPFEAIGELE--------------NKDKYDLVTSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G I + + K GG A + S L + R Sbjct: 207 VYDREYSKGRDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ +F T++ + L +L + +E + Q + Sbjct: 260 E----AIRRYLMQNSHLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315 Query: 426 NA 427 Sbjct: 316 ET 317 >gi|317011733|gb|ADU85480.1| hypothetical protein HPSA_07665 [Helicobacter pylori SouthAfrica7] Length = 2802 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 66/415 (15%), Positives = 123/415 (29%), Gaps = 80/415 (19%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F S + + TP L + D L + + +++P+ GTG F+ Sbjct: 957 EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1008 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +H G EL+P + ++ + L N +T + Sbjct: 1009 -------AHAPSDKNYRFIGTELDP--------------ISANISQFLYPNQVIQNTALE 1047 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + + + + NPP+G + E +++ FL Sbjct: 1048 NHHFYQEYDAFVGNPPYGNHKIYSSNDKELSNESVHNY---------------FLGKAIK 1092 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 +L+ G A V+ S F + R ++++N + LP +F T Sbjct: 1093 ELKDD----GIGAFVV--SSWFMDGKNP---KTREYIVQNATFLGAIRLPNSVFKATGTE 1143 Query: 405 TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 + K GK+ I++ D T + + + +I Sbjct: 1144 VSSDIVFFKKGVDEAIHQSFTKAMPYYGKI--IDSLDDDTLFALQNNRFDSFIPSDQLKI 1201 Query: 453 LDI---YVSRENGKFSRML---DYRTFGY----RRIK---VLRPLRMSFILDKTGLARLE 499 ++ + + K R D FGY +I + R + L++ L Sbjct: 1202 VNAIASHFGFKQEKLQRWYEKIDTANFGYSEQDYKIIKDFMDRVGENNINLNEQTLNEYF 1261 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 + L L + +QIY Y K S K K Sbjct: 1262 INHPENILGHLSLEKTRYSFEINGEQIYKYELQALENKSLDLSQALSQAIEKLPK 1316 >gi|225027237|ref|ZP_03716429.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353] gi|224955437|gb|EEG36646.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353] Length = 2685 Score = 43.0 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 78/293 (26%), Gaps = 63/293 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S V T ++ +L + +P+CGTG F Sbjct: 1182 EEYRSAVGSVLNAHYTQPVLIKAMYQVLA--------GLGFTKGRILEPSCGTGNFFGLL 1233 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-L 282 + +G EL+ + + NI+ +T Sbjct: 1234 PESM----------NKSTLYGVELDQMSAKIA------------GYLYPEVNIE--NTGF 1269 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + + F + N PFG D + F Sbjct: 1270 ERTDYPDGYFDIAVGNVPFGDYRVNDPVYNRHGFLIHDY----------------FFAKT 1313 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 +KL GG AA + + + ++R++L + + V LP F Sbjct: 1314 LDKLRP----GGVAAFITTKGTMDKENT-----KVRQYLFKRAELLGAVRLPNTAFKNAG 1364 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 IL +K E+ + ++ + + +G IL Sbjct: 1365 TKVTSDILFLQKREKE-----IADSEWISVTEDAQGIPVNSYFAAHPEMILGT 1412 >gi|291526662|emb|CBK92248.1| DNA methylase [Eubacterium rectale M104/1] Length = 2550 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 85/325 (26%), Gaps = 73/325 (22%) Query: 117 DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164 + D T+ ++E L K F G + E+ L+ Sbjct: 913 NMDAIRTLKQIESENRLATPEEQKTLSKFVGWGGLSQAFDENNAGWSKEYAELKDLLSDE 972 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + F T ++ + L+ + + +P+ G G F Sbjct: 973 EYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRGGNVLEPSMGIGNFFGSM- 1023 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +G E++ + + + + NI + Sbjct: 1024 ---------PAPMQRSKLYGVEIDSISGRIAK------------QLYQNANI-SITGFEN 1061 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N PFG D + + + Sbjct: 1062 TTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY--------------------FLA 1101 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A++ + L IR++L E + V LP F T Sbjct: 1102 KALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAELVGAVRLPNTAFKDNAGT 1156 Query: 402 NIATYLWILSN--RKTEERRGKVQL 424 + + L RK + V L Sbjct: 1157 EVTADILFLQKRERKIDIEPDWVHL 1181 >gi|322412357|gb|EFY03265.1| helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1998 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 52/390 (13%), Positives = 103/390 (26%), Gaps = 76/390 (19%) Query: 57 EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116 ++ A ++ E F+ L+ TR+ +E+ + A + + Sbjct: 564 KQEEALSEDELEPEVTETPPTTDFHFPE--DLTDFYPKTTRDKVET-----NVAAIRLVK 616 Query: 117 DFDFSSTIARLEKAGLLYKIC-------KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + A + LL K + F + + + + E + + Sbjct: 617 SLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREALKTLVTE---KEYSDM 673 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + T ++ ++ + DP+ GTG F NH+ + Sbjct: 674 KQSSLTAYYTDPLLIREMWN--------KLEQDGFTGGKILDPSMGTGNFFAAMPNHLRE 725 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 +G EL+ T + + +I+ F Sbjct: 726 NSE---------LYGVELDTITGTIAK------------HLHPNSHIEV-KGFETVAFNE 763 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 F LSN PF + R+ D + + K Sbjct: 764 NSFDLVLSNVPFA-------------NIRIADSRY--------DKPYMIHDYFVKKSHDL 802 Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406 + GG+ AI+ G I + + E V LP F TN+ T Sbjct: 803 VHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDTAFKAIAGTNVTTD 857 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN 436 + + + + + Sbjct: 858 MLFFQKHVDKGYVADDLAFSGSIRYDKDDR 887 >gi|219872308|ref|YP_002476709.1| adenine specific DNA methyltransferase [Borrelia garinii PBr] gi|219694353|gb|ACL34878.1| adenine specific DNA methyltransferase [Borrelia garinii PBr] Length = 487 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 33/215 (15%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108 E + K+ E+ +K ++ SE+S ++ T T +Y+ + S Sbjct: 192 EENIDNIELKFKKPNILTTTYETLIKAIYRKGFDISEFS-DSIAQTITYGLFIAYLNNKS 250 Query: 109 D------NAKAIFE-DFDFSSTIARLEKAG-----------LLYKICKNFSGIE--LHPD 148 N K +F I ++ + +L ++ + I+ + Sbjct: 251 GVSIDFLNIKDFIPTNFYLMQNILKIIENISKKDEFSNINWILKELISTVNNIDSKVVFK 310 Query: 149 TVPDRVMS--------NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200 + + YE+ + ++ + + TP+ +V L + FK Sbjct: 311 QLSFDKLGLTLKDPYLYFYENFLAKYDRSLRSSKGVYYTPKSMVGFIVRSLHEILKKGFK 370 Query: 201 ESPGMIR----TLYDPTCGTGGFLTDAMNHVADCG 231 + G + D GTG FL + + + D Sbjct: 371 LNNGFANKNEVKVLDFATGTGTFLLEVIKTILDNH 405 >gi|325270567|ref|ZP_08137167.1| hypothetical protein HMPREF9141_2377 [Prevotella multiformis DSM 16608] gi|324987143|gb|EGC19126.1| hypothetical protein HMPREF9141_2377 [Prevotella multiformis DSM 16608] Length = 1128 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 100/336 (29%), Gaps = 79/336 (23%) Query: 29 TDFGKVILPFTLLRRLECALEP-----------TRSAVREKYLAFGGSNIDLESFVKV-A 76 ++ IL L CA+E T+ V+ Y +I + V + + Sbjct: 260 GNYYNAILQNLFFATLNCAIEDENGNTRKFATSTKRDVKTLYRYAEMFSISEQEIVNLFS 319 Query: 77 GYSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDN----------AKAIFEDFDFSSTI 124 F N + L T + +E FS N +A+ + F Sbjct: 320 EVPFLNGGLF--ECLDKTRYIDGVEQCYNFDGFSRNDARFADGRYKHRAVVPNILFFE-- 375 Query: 125 ARLEKAGLLYKICK-NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AE 175 + GLL + + NF+ E P+ ++ ++E+L+ + E E + Sbjct: 376 ---PEKGLLSILSRYNFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSG 432 Query: 176 DFMTPRDVVHLATA---LLLDPDDALFKE--------------------SPGMIRTLYDP 212 F TPR++V+ + ++ + + DP Sbjct: 433 SFYTPREIVNYMVDESLIAYLGNNDFVRSLFSYDFTFDKAKSNEYLKIADKLKAVKILDP 492 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIR 262 CG+G F +N + D + +G +++ + I Sbjct: 493 ACGSGAFPMGLLNRIIDILERISPNEDIYELKLSVIENCLYGCDIQSIAAQITKLRFFIS 552 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + + + N ++ +N Sbjct: 553 LICNCEKDASKPN------FGIPTLPNLETNFVSAN 582 >gi|325263025|ref|ZP_08129760.1| SNF2 family protein [Clostridium sp. D5] gi|324031418|gb|EGB92698.1| SNF2 family protein [Clostridium sp. D5] Length = 2244 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 64/256 (25%), Gaps = 60/256 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + S T V+ + + +P+ G G F Sbjct: 956 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1007 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+P + + + +I G Sbjct: 1008 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1043 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG+ DK + Sbjct: 1044 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFSIHNY--------------------FF 1083 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A V + +S +RR+L + + + LP + F Sbjct: 1084 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNNAFKANAG 1138 Query: 401 TNIATYLWILSNRKTE 416 T + + + L R Sbjct: 1139 TEVVSDIIFLQKRDRP 1154 >gi|301066055|ref|YP_003788078.1| adenine-specific DNA methylase [Lactobacillus casei str. Zhang] gi|300438462|gb|ADK18228.1| Adenine-specific DNA methylase [Lactobacillus casei str. Zhang] Length = 336 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L ++ +E+ S N + E L + P+ Sbjct: 22 QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + ++ + +TP + LAT ++ +F + Sbjct: 75 -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D GTG L MN + + + +G + + AV +++L+ D Sbjct: 125 VADLAIGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327 L LF +S+ P G ++ E G Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVGYYPVDERAKQFETAAAKGH------- 222 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 S L + L+ G + S +F +G + WL ++ Sbjct: 223 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 270 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 + ++ LP D F L +L + +R K Sbjct: 271 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304 >gi|315174324|gb|EFU18341.1| N-6 DNA Methylase [Enterococcus faecalis TX1346] Length = 335 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 102/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGYKI------SGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|315143413|gb|EFT87429.1| N-6 DNA Methylase [Enterococcus faecalis TX2141] Length = 335 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYNTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|288926883|ref|ZP_06420784.1| superfamily II DNA and RNA helicase [Prevotella buccae D17] gi|288336364|gb|EFC74744.1| superfamily II DNA and RNA helicase [Prevotella buccae D17] Length = 1109 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 55/369 (14%), Positives = 115/369 (31%), Gaps = 55/369 (14%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------NHVADCGSHHKIPPILVPHG 244 ++ F IR DP+ G G F + + +I + P+G Sbjct: 111 IVAAIADTFSSVDVPIRRCLDPSAGMGAFTEIFATKAGTVDAMEKDLLTARISQAIHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 Q +++R+ + +L ++ SN PFG Sbjct: 171 QG-----------NIIVRQAPFEAIGELED--------------KDKYDLITSNIPFG-- 203 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D ++E+ G+ I + + K GG A + S Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR--KTEERR 419 L + + IRR+L++N + + + LP+ +F T + + L +L + KT Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQSGKTISEG 309 Query: 420 GKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476 + Q + + + + K + D + + I I R G+ + + Sbjct: 310 MEQQFVASVSAPIAEGSSVVFKHNSLFDGEWKDIAHRTIATERTMGRDPYGKPAWEYHFD 369 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536 + L R + + + + + +K + + E Sbjct: 370 GSIEDLAESIRTQLSLEIEQRFDRKLYETGIPMTEEERQKEAVKQLRKLGVTVDLPEEEP 429 Query: 537 KESIKSNEA 545 K +++ A Sbjct: 430 KTDKEADNA 438 >gi|162451514|ref|YP_001613881.1| hypothetical protein sce3242 [Sorangium cellulosum 'So ce 56'] gi|161162096|emb|CAN93401.1| hypothetical protein sce3242 [Sorangium cellulosum 'So ce 56'] Length = 1401 Score = 43.0 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 27/141 (19%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA- 223 E TPR + L+P A E+ + + DP G+G FL A Sbjct: 582 EERRRTGSHYTPRSLTEKVVRRTLEPLLACLGEARTPEQILQLKICDPAMGSGAFLVAAC 641 Query: 224 ---------------------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 H ++ +G + + + + Sbjct: 642 RELAGEIVSAWTRQGELARIIEQHGDAHLHARRLVAQQCLYGVDKNAAAVELAKLSLWLV 701 Query: 263 RLESDPRRDLSKN-IQQGSTL 282 L + ++ G +L Sbjct: 702 TLSRTLPFTFVDHALRHGDSL 722 >gi|227514565|ref|ZP_03944614.1| DNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227087122|gb|EEI22434.1| DNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 289 Score = 43.0 bits (100), Expect = 0.19, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + A K+ K + I+L + + + + + + A MTP + L Sbjct: 1 MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L+ + DP GT LT MNH+ + +G + Sbjct: 59 MASLI------EQVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + +V + +DL + + + +++ P G Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDLVVADLPVGY--- 154 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 ++ R G S + + + + GG + L LF Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLLPGGF--GVFLVPKALF 202 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424 + +G + W+ ++ ++ LP +LF + +A L +L + T + GKV L Sbjct: 203 QSKETTG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258 >gi|198451283|ref|XP_001358309.2| GA17389 [Drosophila pseudoobscura pseudoobscura] gi|198131417|gb|EAL27447.2| GA17389 [Drosophila pseudoobscura pseudoobscura] Length = 4819 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 19/138 (13%) Query: 36 LPFTL--------LR--RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85 P LR R LE + + + + S + L + AG + ++ Sbjct: 465 FPLLFQGDADEGLLRINRTSNVLEFFKQRMLQYKERYASSQVLLPAL-PGAGATAHSPPP 523 Query: 86 YSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLE----KAGLLYKIC- 137 L L + + F + +FE + +LE + +L + Sbjct: 524 DDLQQLWRFCNEDVFGQTLDGFLAQLSELRQVFEAAVQFQQLEKLEIGGLRGKMLTERIR 583 Query: 138 KNFSGIELHPDTVPDRVM 155 + F+ ++ + + + Sbjct: 584 EIFNEFKVLFEQWSNVDI 601 >gi|190404406|ref|YP_001961037.1| rcorf62 [Agrobacterium rhizogenes] gi|158322202|gb|ABW33619.1| rcorf62 [Agrobacterium rhizogenes] Length = 1702 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 76/288 (26%), Gaps = 59/288 (20%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S TP ++ + + + +P GTG F Sbjct: 158 DYASLARCTQYAHFTPEFIIRAIWS--------GLQRLGWCGGRMLEPGIGTGLFPALMP 209 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 D G EL+P T + I G Sbjct: 210 AAFRD---------RTFVTGVELDPVTARIVK------------LLQPKARIINGDFARA 248 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 DL + + NPPF + + F+ + Sbjct: 249 DLAP--IYDLAIGNPPFSDRTVRSDRTYRSLGLRLHDY---------------FITRSID 291 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 L+ G AA V SS + A R ++ + + A + LP F T Sbjct: 292 LLKP----GALAAFVTSSGTMDKADAT-----AREYIAKTADLIAAIRLPEGSFRRDAGT 342 Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQ 448 ++ L RK E + ++ ++ ++EG R + Sbjct: 343 DVVVDLLFFRKRKVGEPTSDLSWLDLEEVRPESQDEGAVRVNRWFAEH 390 >gi|327405024|ref|YP_004345862.1| hypothetical protein Fluta_3048 [Fluviicola taffensis DSM 16823] gi|327320532|gb|AEA45024.1| hypothetical protein Fluta_3048 [Fluviicola taffensis DSM 16823] Length = 1171 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 39/187 (20%) Query: 104 IASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 + S+N I D F S LEK Y + + + +V ++ I+E+L Sbjct: 319 LTGLSENIDTLIISDKWFQSFFEELEK----YNFTIDENSVTDVEVSVDPEMLGRIFENL 374 Query: 163 IRRFGSEVSEG----AEDFMTPRDVVHLA-----------------------------TA 189 + + E F TPR++V Sbjct: 375 LAEIDPDSGETARKATGSFYTPREIVDYMATESLVQYIHNKTTISQHKLRTVFKMSENAE 434 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + + D + + DP CG+G F + + + Q + Sbjct: 435 IEFNESDRIGILKALDTVKILDPACGSGAFPMGVLQKIVLALQKLDKNAVWWI-KQRINE 493 Query: 250 ETHAVCV 256 +A Sbjct: 494 NKNATAR 500 >gi|326803624|ref|YP_004321442.1| hypothetical protein HMPREF9243_1205 [Aerococcus urinae ACS-120-V-Col10a] gi|326651385|gb|AEA01568.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a] Length = 346 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 108/369 (29%), Gaps = 41/369 (11%) Query: 86 YSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 ++ + + LE +Y+ + + + + + I ++ ++ K + + Sbjct: 10 FTYLHEATEKSAQALEMTYVEAIHETLQNLL--LGSAQQINGAPDDQVIKELNKLYQKSQ 67 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + NI + L+ + A TP D + L L + S Sbjct: 68 WQ--ALDQEAKHNIIQWLLIEGVKKQEIQANYQATP-DAIALIIGYLAFRLVESNQNSLE 124 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 L+DP GTG + D ++ G + + ++ M + L Sbjct: 125 KSINLFDPCFGTGNLWSLVAKTFTDQDYQ------VLGAGVDNDDLMLSIGEKAMALLGL 178 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-HKNGELGR 323 + G L +++ P G + K K E G Sbjct: 179 SPKLTLADA----LGDLLVDP------CQVIIADLPIGYYPQDQVAQTFKSGAKFIEEGS 228 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 L + + LE G ++ S L ++ + + E Sbjct: 229 HAY-------AHYLLIEQGIHYLEDNAWGL----FLVPKSTL----TDPTLPQLMQGINE 273 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATDLW--TSIRNEGKK 440 ++A + LP LF + I+ + ++ +V + N D ++ + Sbjct: 274 TAYLQAFINLPQSLFQNEFSQKSILIVQKQGDRAKQSDQVLIGNIPDFKAVDDMKQFTSQ 333 Query: 441 RRIINDDQR 449 D Sbjct: 334 FNDWLDKHI 342 >gi|317009100|gb|ADU79680.1| type II adenine specific methyltransferase [Helicobacter pylori India7] Length = 545 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 43/235 (18%) Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178 +L K L + + I + + + + YE + + Sbjct: 58 NKLNKYANKSLKGVHNHQELILKYLKILENSSDLEKLGYSYEE---ELSNTTRNLEGIYY 114 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L P D ++ DP G+G F+ A+ Sbjct: 115 TPNQIVE---QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFK 157 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G + + A+ +R++ D NI Q T +F +N Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDCL-NIAQKD-FLNLKHTP-QFDCIFTN 209 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+GKK+ +++ + K L + D + LF + N L+ + G Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFVASLNCLKENAHLG 255 >gi|153864485|ref|ZP_01997373.1| DNA methyltransferase [Beggiatoa sp. SS] gi|152146020|gb|EDN72627.1| DNA methyltransferase [Beggiatoa sp. SS] Length = 479 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 98/355 (27%), Gaps = 80/355 (22%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 L L + +++ + ++ AI D ++ + K +F Sbjct: 8 LRRLFNQIVGIDIDDRLVWAVEHLVAILNHTDIAAILKDFGKRTRQTDPVVHF------- 60 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 YE ++ + ++ E + TP VV + FK G+ Sbjct: 61 -----------YETFLKHYDPKMREMRGVYYTPEPVVSYIVRSVDGLLKQRFKLRDGLAD 109 Query: 208 -----------TLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELE 248 + DP GTG FL NH+ K + HG EL Sbjct: 110 NSRLESGLHKVQILDPAVGTGTFLYAVFNHIFAQFMKTKGMWSAYVAEHLLPRVHGFELL 169 Query: 249 PETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSK---------------------- 284 + V G+ ++ + + D I ++L Sbjct: 170 MAPYTVAHIKLGLQLQEMGYEFESDERLRIFLTNSLENAHETGSTPTLPFAEWLVNEGRA 229 Query: 285 --DLFTGKRFHYCLSNPPFGKKWEKDKDA-------VEKEHKNGELGRFGPGLPKISDGS 335 ++ + NPP+ D ++ F +S+ + Sbjct: 230 ASEVKQDSPVMVIIGNPPYSGHSLNKGDWITHLLRGIDNNLDAEIANYFEVDGKPLSERN 289 Query: 336 MLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 +L K + G G + + L N +R+ L+++ Sbjct: 290 PKWLQDDYVKFIRFAQWRIESTGYGILGFITNHGYLDNPTFRG----MRQALMQD 340 >gi|299142629|ref|ZP_07035759.1| type IIS restriction endonuclease [Prevotella oris C735] gi|298575844|gb|EFI47720.1| type IIS restriction endonuclease [Prevotella oris C735] Length = 917 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 99/336 (29%), Gaps = 79/336 (23%) Query: 29 TDFGKVILPFTLLRRLECALEP-----------TRSAVREKYLAFGGSNI-DLESFVKVA 76 ++ IL L CA+E T+ ++ Y +I + E + Sbjct: 260 GNYYNAILQNLFFATLNCAIEDENGNTRKFAISTKRDIKTLYRYAEMFSISEQEVINLFS 319 Query: 77 GYSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDN----------AKAIFEDFDFSSTI 124 F N + L T R+ +E FS N +A+ + F Sbjct: 320 EVPFLNGGLF--ECLDKTRYRDGVEQCYNFDGFSRNNARFADGRYKHRAVVPNILFFE-- 375 Query: 125 ARLEKAGLLYKICK-NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AE 175 + GLL + + NF+ E P+ ++ ++E+L+ + E E + Sbjct: 376 ---PEKGLLSILSRYNFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSG 432 Query: 176 DFMTPRDVVHLATA---LLLDPDDALFKE--------------------SPGMIRTLYDP 212 F TPR++V+ + ++ + + DP Sbjct: 433 SFYTPREIVNYMVDESLIAYLGNNDFVRSLFSYDFTFDKAKSNEYLKIADKLKAVKILDP 492 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIR 262 CG+G F +N + D + +G +++ + I Sbjct: 493 ACGSGAFPMGLLNRMIDILERISPNEDIYELKLSIIENCLYGSDIQSIAAQITKLRFFIS 552 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + + + N + +N Sbjct: 553 LICNCEKDASKPN------FGIPTLPNLETKFVSAN 582 >gi|308061808|gb|ADO03696.1| type II adenine specific methyltransferase [Helicobacter pylori Cuz20] Length = 545 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSYYEEELSNTARN---LEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q T +F +NPP+GKK+ +++ K RF Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQ-------KENFKQRFN- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|229495719|ref|ZP_04389447.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC 35406] gi|229317293|gb|EEN83198.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC 35406] Length = 1828 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 81/253 (32%), Gaps = 48/253 (18%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 S + F TP VV A +E+ + + + DP+ G G F + Sbjct: 93 SYMQSLKNSVMTAFYTPAPVVR--------EIAASLREAGIVPQRILDPSAGMGEF-IRS 143 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +A G + GQ L + + R + I+ Sbjct: 144 FDGIAAEGHTTFGFEKDILTGQMLS-----------ALHPEDKIRIR-GFEEIES----- 186 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 G F SN PFG D K E R + ++S + F+ Sbjct: 187 ---KLGGYFDVVSSNIPFGDVAVFDPVFS----KTDEPAR---KIARMSLHNYFFV---- 232 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A + S + +R WL+ + + + V LP +LF Sbjct: 233 -KGVDMLREGGVLAFITSQGVMNAPTNEP----VREWLMSHTRLVSAVRLPNNLFSENAG 287 Query: 401 TNIATYLWILSNR 413 T + + L +L + Sbjct: 288 TEVGSDLIVLQKQ 300 >gi|315608534|ref|ZP_07883519.1| DNA methylase [Prevotella buccae ATCC 33574] gi|315249782|gb|EFU29786.1| DNA methylase [Prevotella buccae ATCC 33574] Length = 1592 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ + +R DP+ G G F A G + + Sbjct: 111 IVSAISGALASTNLQVRRCLDPSMGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + +R + +L ++ SN PFG D Sbjct: 166 LHPYGKGNIFVRNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSGLIVLQKQTGKE 305 >gi|168183122|ref|ZP_02617786.1| restriction endonuclease family protein [Clostridium botulinum Bf] gi|237794552|ref|YP_002862104.1| restriction endonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|182673735|gb|EDT85696.1| restriction endonuclease family protein [Clostridium botulinum Bf] gi|229261340|gb|ACQ52373.1| restriction endonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 741 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 19/192 (9%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103 + + + E + + F N + L ++ N + Y Sbjct: 58 ISKIFMEKNNIIGELAKKNIKYYALTLDTISLVNLVFDNADKKFLESIFKDNIK---YEY 114 Query: 104 IASFSDNAKAIFEDFDFSSTIARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 I + + DF L LL KI + ++ + IYE Sbjct: 115 INPSYYS----LDKEDFLHYENDLFYRYNILLNKIIDEIDTFDFIQNSG---EIGEIYEK 167 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 +I ++ + F TP ++ + F L D + G G F+ Sbjct: 168 II---STKYKKSMGIFYTPEHIIDYILENVFYE----FSPLENPFVKLIDLSVGAGYFII 220 Query: 222 DAMNHVADCGSH 233 A + + + Sbjct: 221 KAYDKLKKVFTE 232 >gi|189462451|ref|ZP_03011236.1| hypothetical protein BACCOP_03139 [Bacteroides coprocola DSM 17136] gi|189430612|gb|EDU99596.1| hypothetical protein BACCOP_03139 [Bacteroides coprocola DSM 17136] Length = 956 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 87/295 (29%), Gaps = 58/295 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+ + + + R + +P+ G G F++ V + Sbjct: 104 AFYTPQAITDTIA--------DVLHDRKVRPRLVLEPSAGMGAFISP----VLSNNPQAE 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR-DLSKNIQQGSTLSKDLFTGKRFHY 294 + ++ + ML R + + I+ RF Sbjct: 152 V----TAFEKD-------LLTGKMLGHLYPQQKIRTEGFEKIE--------KPFLNRFDL 192 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 +SN PFG D + E++ + + + FL K GG Sbjct: 193 AISNIPFG-----DIAVFDAEYEKKSV---MHRIAAKKVHTYFFL-----KGLDAVRDGG 239 Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILS 411 A + S S L G R +++ + + + LP +LF T + L IL Sbjct: 240 VVAFITSQSVLNT----EGNGGTRYLMMKQADLLSAIRLPNNLFTENANTEVGCDLIILQ 295 Query: 412 N--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464 K + ++ + G D +I+ ++ + Sbjct: 296 KNINKMDLSEEDMRFTRTVR----SNHTGVVTNEYFLDHPERIIHTEAKKDTDPY 346 >gi|152983386|ref|YP_001354718.1| hypothetical protein mma_3028 [Janthinobacterium sp. Marseille] gi|151283463|gb|ABR91873.1| Hypothetical protein mma_3028 [Janthinobacterium sp. Marseille] Length = 403 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 80/275 (29%), Gaps = 46/275 (16%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + A F TP + + + L ++ D G G Sbjct: 4 SKDSARGNPDAGQFATPDWIADILCSRLSSGLK-----------SVADLGVGKGALSLAL 52 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N V DC + + A I + D R Sbjct: 53 RNRVLDCSI---VGIDKHLLPDGDQETMQAQG-----IHLITKDIGRPKFS--------- 95 Query: 284 KDLFTGKRFHY--CLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 D F + +SNPPF D+V ++ G G K+ ++FL Sbjct: 96 -DWFLKQYGAVSTVISNPPFINVLNSPLIDSVLAKNSLGNRG------AKVQRLDLIFLA 148 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 H + G A +L S A + + ++ N + I+ALP++ + Sbjct: 149 HAMKMITQQ----GEIAFILPRSAF----ATASSRTWLQSMIHNFGLAEIIALPSNAYHE 200 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 + T + I + V L A R Sbjct: 201 AEVETAILIFRPGMRRAGKINVTLFRAEGKSKIDR 235 >gi|257455842|ref|ZP_05621065.1| type I restriction enzyme M protein [Enhydrobacter aerosaccus SK60] gi|257446756|gb|EEV21776.1| type I restriction enzyme M protein [Enhydrobacter aerosaccus SK60] Length = 169 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 37/159 (23%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 +RRL+ V+EK I F + + + S ++ Sbjct: 35 LLFIRRLDEL-----QLVKEKKANRLKQPIVNPIFDESQAHLRW--SRFT---------- 77 Query: 98 NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144 L ++ A +F D ++ ++ A LL K+ + + Sbjct: 78 -TLGDASQLYNVVANEVFPFIKNLGAEDDTTYSHHMKDARFTIPTPALLTKVVDLVADVP 136 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183 + +IYE+++ + + F TPR + Sbjct: 137 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHI 169 >gi|330836160|ref|YP_004410801.1| helicase A859L [Spirochaeta coccoides DSM 17374] gi|329748063|gb|AEC01419.1| helicase A859L [Spirochaeta coccoides DSM 17374] Length = 1418 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 36/222 (16%) Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 ++ +A+F +N K + F + I L++ L + F G+ + E Sbjct: 881 DTTLANFDENIKDVV--FKEVTGI-TLDQFRTLRDTYEFFDGVVFNESIQEFLHKK---E 934 Query: 161 HLIRRFGSEVSEG---------AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 L F E TPR VV L L + + +F + +T D Sbjct: 935 QLADYFDDSHDEDIFDYIPPQKTNQIYTPRKVVKLMIDKLEEENPDIFTD---KDKTFAD 991 Query: 212 PTCGTGGFLTDAMNHVA--------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 +G +LT+ + + D K +G + + + Sbjct: 992 LYVKSGLYLTEIVKRLYTALAGQIPDEKQRIKHILENQIYGFAPSEIIYNIARNFIFGSF 1051 Query: 264 LESDPRRDLSKNI----QQGSTLSKDLFTGKRFHYCLSNPPF 301 + +++ + G +L +F + NPP+ Sbjct: 1052 ANINDSHLQCRDLTEMAKTGRSL------DMKFDVVVGNPPY 1087 >gi|153868679|ref|ZP_01998435.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152074725|gb|EDN71553.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 1061 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 20/179 (11%) Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203 + V + ++ +Y+ LI E ++ TP + A L + Sbjct: 317 DYDFSNVQEDILKGVYQELID---LETRHALGEYYTPDWLCERIVANLPVTHQSKI---- 369 Query: 204 GMIRTLYDPTCGTGGFLTDA-MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP CG+G FL A D G ++ P + + +L+ Sbjct: 370 ------LDPACGSGSFLRAAVAQFKRDFPKLSAPQLTSQIIGIDIHPLSVQIAKTTLLLA 423 Query: 263 RLESDPRRDLSK--NIQQGSTLSKD----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 + + ++ ++L G F + + + + + E + Sbjct: 424 LSDKIHHANKPVTLHVYLANSLLLPEGVAGLFGASFKMIIDDKVYSLNMDIFANPAEFD 482 >gi|1546793|gb|AAC57943.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus SC1A] Length = 372 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 64/251 (25%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 ++ G + F TP+ + + +F+ P +++ +P+CG+G FL + Sbjct: 12 KQLGMKHRSKMGIFFTPKPLRDI-----------VFQHIPINPQSVLEPSCGSGEFLVEC 60 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 P G EL+ ++ I L+ Sbjct: 61 ETR----------FPTASITGVELDETLASISKEN------------TTRSTIYTQDFLT 98 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D +F + NPPF + ++ +K GR S L++ L Sbjct: 99 FD---EGKFDLIIGNPPFVQ--------MKTVNKQASSGR-----------SNLYIEILF 136 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFFRT 401 + N G A+V+ S + NG R +L ++ E I F T Sbjct: 137 KCMTQHLNDNGVLAMVIP-STIMNGHFSQ---PTRELILSKKILHFETI---REHTFKDT 189 Query: 402 NIATYLWILSN 412 + ++ N Sbjct: 190 KAGVSILVIQN 200 >gi|308176337|ref|YP_003915743.1| site-specific DNA-methyltransferase (adenine specific) [Arthrobacter arilaitensis Re117] gi|307743800|emb|CBT74772.1| putative site-specific DNA-methyltransferase (adenine specific) [Arthrobacter arilaitensis Re117] Length = 549 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 59/214 (27%), Gaps = 44/214 (20%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + TP V L + +P+CG FL A + + + Sbjct: 17 GAYFTPEPVASFMAQWALGQQ----------GSRVLEPSCGEAQFLAAAHSVLDEQREQL 66 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 G EL + M + I+Q + F Sbjct: 67 D------MLGLELHEPSVQAARQRMRAAGIN--------ARIEQANFFEVSGHGD--FDA 110 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN----KLELPP 350 + NPP+ V + G + K S + L + Sbjct: 111 VIGNPPY----------VRYQLHRGADRQLSRAAAKASGVELNELASIWAAFVVHATSFL 160 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 GGR A+VL + +F A +R+ LLE Sbjct: 161 AVGGRLALVLPAELMFVNYA----GPVRQMLLER 190 >gi|153871961|ref|ZP_02000989.1| helicase [Beggiatoa sp. PS] gi|152071572|gb|EDN69010.1| helicase [Beggiatoa sp. PS] Length = 344 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 16/161 (9%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140 +N S++ + LE+ + +F F S L+ Y + + Sbjct: 195 FNESQFHRENV----IAKELEAVVNTF----------FTVKSPRDTLKSIDSYYAVIRR- 239 Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALF 199 + + + IYE+ + + + ++ TP ++V + Sbjct: 240 EAANIANHHEKQQFLKVIYENFYKTYNPKAADRLGIVYTPNEIVRFMIESTDYLLNKHFN 299 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + + DP GTG F+T+ + ++ GS I Sbjct: 300 RLLADENVEILDPATGTGTFITELIEYLPKIGSVQSIWKKY 340 >gi|153873071|ref|ZP_02001775.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152070463|gb|EDN68225.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 719 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 64/223 (28%), Gaps = 58/223 (26%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI 206 ++ + ++++H++ S+ T + ++ L L LD A F++ + Sbjct: 78 SSISPAIFGSLFQHIMGD--SKARRKLGAHYTSEKHILRLINPLFLDDLYAEFEKLQALK 135 Query: 207 R----------------TLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPI------ 239 R +DP CG G FL + HK Sbjct: 136 RDKRKKLAAFQNKLSALYFFDPACGCGNFLIVTYQALRRLELQVLREQHKKSQDTHLNFE 195 Query: 240 -------LVPHGQELEPETHAVCVAGMLI--RRLESDPRRD-----------LSKNIQQG 279 +G ELE + M + ++ + + S I G Sbjct: 196 IAPLISLDHFYGIELEEWPMRIAEVAMWLTQHQMNREFAQQFGREPDLLPLKTSAQITCG 255 Query: 280 STLSKD--------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + L D F Y L NPPF K K Sbjct: 256 NALQLDWQQVVDVSKFKQVETLYLLGNPPFIGKNFKTASQNAD 298 >gi|315652660|ref|ZP_07905637.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485104|gb|EFU75509.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 2509 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 55/380 (14%), Positives = 110/380 (28%), Gaps = 69/380 (18%) Query: 47 ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106 L +++E ++ E+ ++ TS + + N R E + Sbjct: 1434 ILSIAEKSLKESVDKEELPVLNKEALSEIPRQEETYTSGEYVKNISPVNYRITREDEVLP 1493 Query: 107 FSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSN------- 157 S+ K E + + + I + G D + Sbjct: 1494 PSERLKNNIEAIKVLKQLGKENRNASKEEQDILSKYVGWGGLSDVFDEERGGQWQEARMF 1553 Query: 158 IYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 + E+L+ + + F TP+ V+ + + +P+ GT Sbjct: 1554 LKENLLPSEYEAAKESTLTAFYTPKVVIDAIYH--------TLSDMGFESGNILEPSMGT 1605 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G F+ + + +G EL+ + + + + NI Sbjct: 1606 GRFIGNLPLSMQ----------NSKFYGIELDSISGQIAK------------KLYPNSNI 1643 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 Q K F+ F + N PFG+ D++ + + Sbjct: 1644 QV-KGFEKTAFSNNLFDIAVGNVPFGEYRVSDREYEKNNFLIHDY--------------- 1687 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 K GG A + SS + +IRR++ E + LP + Sbjct: 1688 -----FFAKTLDKVRNGGIIAFITSSGTMDKRN-----EDIRRYISERAEFLGAIRLPNN 1737 Query: 397 LF---FRTNIATYLWILSNR 413 +F T + + + L R Sbjct: 1738 IFKDEAGTEVTSDIIFLKKR 1757 >gi|262045267|ref|ZP_06018292.1| modification methylase Eco57IB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037323|gb|EEW38569.1| modification methylase Eco57IB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 542 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 91/243 (37%), Gaps = 32/243 (13%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + + TP+++ T +L +++ +P+CG G F N+ D Sbjct: 11 KLRGGYYTPQNIADFTTKWVL----------NNKPKSILEPSCGDGVFFQSLYNNKFDKN 60 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + + + ++ ++ + + E D IQ+ +T Sbjct: 61 TKVQGYELFDIEAKKSMELCKSLGFSD--VEITEGDFLEWAKVAIQKKNT---------S 109 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + NPPF + +KD +E+ K ++ + F++ + L Sbjct: 110 FDAIIGNPPFIRYQFLEKDF--QENTEAIFKLLDLKFTKHTNAWVPFILSGVSLLNP--- 164 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 GGR +V+ S + A S +R +L E+ + ++ P +++F + + +L Sbjct: 165 -GGRLGMVIPSEIINVMHAQS----LRTFLGEHCS-KIVIIDPKEIWFSETLQGAVILLV 218 Query: 412 NRK 414 +K Sbjct: 219 EKK 221 >gi|255015553|ref|ZP_05287679.1| hypothetical protein B2_16718 [Bacteroides sp. 2_1_7] Length = 1133 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 77/290 (26%), Gaps = 76/290 (26%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 + + K IL L + P S + G + + Y F N Sbjct: 256 DESKYYKAILQNLFFAMLNSPITPEGSKELSERHFRKGRGDYDNNKLMRYEYYFKN--PQ 313 Query: 87 SLSTLGSTNT------------RNNLESYIASFS--DNAK-------------AIFEDFD 119 L + + + Y FS + K + ++ D Sbjct: 314 LFVDLANKTVPFLNGGLFDCLDEKDKDLYYDGFSDREAVKKALIVPDYLFFGEEVGKNID 373 Query: 120 FSSTIARLEKAGL----LYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSE 169 S +K + + I K NF+ E P ++ ++E+L+ + E Sbjct: 374 LSEWYGDKKKKKVSARGIIDILKRYNFTVEENTPFDKEVSLDPELLGKVFENLLASYNPE 433 Query: 170 ----VSEGAEDFMTPRDVVHLATA-----------------------------LLLDPDD 196 + F TPR++V + + Sbjct: 434 TQTTARKQTGSFYTPREIVQYMVDESLVAHLKRTVGDDLETQYRQLMQYTDEVVNFTEEQ 493 Query: 197 ALFKESPGMIRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILVP 242 + DP CG+G G L ++ ++ + ++ Sbjct: 494 RKQIMQSLYNCKVLDPACGSGAFPMGMLQQMVHILSRIDPDNTQWKEMML 543 >gi|330507238|ref|YP_004383666.1| hypothetical protein MCON_1119 [Methanosaeta concilii GP-6] gi|328928046|gb|AEB67848.1| conserved hypothetical protein [Methanosaeta concilii GP-6] Length = 1345 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 37/148 (25%) Query: 172 EGAEDFMTPRDVVHLATALLLDP-----------DDALFKESPGMIRTL--YDPTCGTGG 218 + F TP+ +V L+P D L + + ++ DP G+G Sbjct: 500 KATGSFYTPQYIVKYIVKNTLEPLIKPMMEEASMDADLRTDLLRKLLSIKVLDPAMGSGH 559 Query: 219 FLTDAMNHVADCGSHHKIPPILV-----------------------PHGQELEPETHAVC 255 FL +A +++A H + +G +L P + Sbjct: 560 FLVEATDYIAREIIHAREIARQEDEDSDAVAENDIHWARREVVRNCIYGVDLNPMAVELA 619 Query: 256 VAGMLIRRLESD-PRRDLSKNIQQGSTL 282 + ++ + S+ P L +++ G++L Sbjct: 620 KLSLWLKTVASNKPLSFLDHHLRCGNSL 647 >gi|168210989|ref|ZP_02636614.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str. ATCC 3626] gi|170710996|gb|EDT23178.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str. ATCC 3626] Length = 1553 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 52/337 (15%), Positives = 97/337 (28%), Gaps = 72/337 (21%) Query: 93 STNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLY-----KICKNFSGIELH 146 N N + + K F++ T+ ++E L +I +SG Sbjct: 380 PKNKLINFKDNSNDENIGLKTKFKNNIAAIETLKKIENENRLATSEEQEILSKYSGWGGM 439 Query: 147 PDTVPDRVMSNIYEH-----LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 R E+ L+ + S + TP+ V+ Sbjct: 440 AQAFDRRANGWSKEYTELRSLLTQEEYESARASTLNAHYTPKVVIDSIYR--------AL 491 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + + +P+ G G F + +++ +G EL+ + + Sbjct: 492 RLFGFREGNILEPSMGVGHFFSRLPDNM----------NNSKLYGVELDDISGRISK--- 538 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 ++ S I+ + F+ F + N PFG DKD + Sbjct: 539 -------QLYQNASIEIKG---YEETTFSNNFFDVAIGNIPFGDYKVFDKDFNKNNFLIH 588 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + F +KL+ G A V S + S +R Sbjct: 589 DY----------------FFAKTLDKLKE----NGIVAFVTSKGTM-----DKANSSVRE 623 Query: 380 WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 +L E + LP + F T + T + L + Sbjct: 624 YLSERADFIGAIRLPKNTFKSSANTEVTTDIIFLQKK 660 >gi|258514693|ref|YP_003190915.1| hypothetical protein Dtox_1417 [Desulfotomaculum acetoxidans DSM 771] gi|257778398|gb|ACV62292.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM 771] Length = 1557 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 23/144 (15%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I R + + + TP + L + T+ +P G+ FL Sbjct: 508 FIYRMAGRDRQRSASYYTPEVLTRCLVKYALKELLEGKTADEILTLTVCEPAMGSAAFLN 567 Query: 222 DAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVCVAGM 259 +A+N +A+ + +G +L P + + Sbjct: 568 EAVNQLAEAYLERREEETGEVVQHQERARELQKVKMFIADRNVYGVDLNPVAVELAEVSL 627 Query: 260 LIRRL-ESDPRRDLSKNIQQGSTL 282 + + + ++ G++L Sbjct: 628 WLNTIYKGAYVPWFGNQLRCGNSL 651 >gi|282880842|ref|ZP_06289536.1| hypothetical protein HMPREF9019_2132 [Prevotella timonensis CRIS 5C-B1] gi|281305283|gb|EFA97349.1| hypothetical protein HMPREF9019_2132 [Prevotella timonensis CRIS 5C-B1] Length = 626 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 24/159 (15%) Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--------- 232 D+ + L D + ++ L DPTCGTG F+ A+N + + Sbjct: 162 DLSKFISTL--DNKEITLMKNHVATIKLIDPTCGTGSFVIKAINILCNIYKLLGMPLGAS 219 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGML---IRRLESDPRRDLSKNIQQGSTLSKDL--- 286 + G +++ ET + + + + KN + G+T+ D Sbjct: 220 GIQHIIKNNVFGVDIDEETLEILRYRLFSTALYEFSVKLTKKDLKNFKLGNTICDDTFLW 279 Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 F F + NPP+ + + E+ Sbjct: 280 EKEFRMVFKNGGFDCVVGNPPYKEYTVAKLNYSLPEYFK 318 >gi|172037384|ref|YP_001803885.1| putative adenine specific DNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171698838|gb|ACB51819.1| putative adenine specific DNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 400 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 16/171 (9%) Query: 56 REKYLAFGGSNIDLESFVKVA--GYSFY-NTSEYSLSTLGSTNTRNNLE-----SYIASF 107 E+ L + F + FY S + L + N +N + Y+ Sbjct: 219 LEEALGITFEGDKGDRFFRSTLIQTLFYGIFSAWVLWHKENPNREDNFDWRTAVYYLHV- 277 Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +AIFE S + L+ +L + + YE ++ Sbjct: 278 -PMIQAIFERIAAPSKLKALDLVEVLNWTGSALNRVRREDFFTQFDEGEAVQYFYEPFLQ 336 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDP 212 F ++ + + TP+++V + + G+ + DP Sbjct: 337 AFDPQLRKELGVWYTPKEIVQYMVSRVDTVLKEELHIEDGLADDNVYILDP 387 >gi|317055892|ref|YP_004104359.1| adenine specific DNA methyltransferase [Ruminococcus albus 7] gi|315448161|gb|ADU21725.1| adenine specific DNA methyltransferase [Ruminococcus albus 7] Length = 1093 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 73/294 (24%), Gaps = 89/294 (30%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL--------------------------- 191 YE + + + TP+ VV+ + Sbjct: 346 YEEFLTAYDKAQKVQRGVYYTPQPVVNFIVRAVDSILKTEFGLADGLASEETKTVKYMRE 405 Query: 192 -LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------------ADCGSH 233 + + DP GTG FL + + + Sbjct: 406 KIRGQGMTEDTKEVPAVQILDPATGTGTFLRQTILQIYDNFRAKHKGESEEQIRKAWNEY 465 Query: 234 HKIPPILVPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + +G EL +AV M+++ D D N+ ++L + + Sbjct: 466 VPKHLLPRLNGFELMMAPYAVAHMKLAMVLKDTGYDFGGDHRLNVFLTNSLEEAGKDDFQ 525 Query: 292 F------------------------HYCLSNPPFGKKWEKDKDAVEK---EHKNGELGRF 324 + + NPP+ + + ++K GR Sbjct: 526 MTLFDNDPLAFESIEANQAKKNNGINVIIGNPPYSGESANKGKWIMDLMEDYKKEPGGRI 585 Query: 325 GPGLPKISDGSMLFLMHLANK------LELPPNGGGRAAIVLSSS----PLFNG 368 + + ++ K L + +G G A + P F G Sbjct: 586 KLQ-----EQNYKWINDDYVKFLRYAQLFIEKSGYGIMAYICPHGYIDNPTFRG 634 >gi|256838486|ref|ZP_05543996.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739405|gb|EEU52729.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1944 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 80/268 (29%), Gaps = 61/268 (22%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ +L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ D +Q + K F Sbjct: 152 IMAFEK----------------DLMTGKILGHLHPDQKIRVQGFEKIEKPF--TDYFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351 +SN PFG D + E + + S + FL K Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSHD------MARRSAAKTIHNYFFL-----KSLDAVR 237 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408 GG A + S L + IR +++ N + + LP +LF T + + L Sbjct: 238 EGGIVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLI 293 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN 436 IL ++R L + +L+ Sbjct: 294 ILQKNSGKKRV----LYDYEELFVQTEK 317 >gi|299483503|gb|ADJ19584.1| helicase domain-containing protein [Treponema primitia ZAS-2] Length = 1659 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 2/152 (1%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 S + + I + +T E+ Y + + L RV+S++Y+ R Sbjct: 816 SQSMQGIINVLNEKTTKEDSEQLDRFYVSVRKRAE-GLDNGEAKQRVISDLYDKFFRTAF 874 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNH 226 V+E TP ++V + D F S + DP GTG F+T + Sbjct: 875 PLVTEKLGIVYTPVEIVDFIIHSVEDVLQKEFSRSLSDENVHILDPFTGTGTFITRLLQS 934 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 + H E+ + + Sbjct: 935 GIIRPEDLERKYNKEIHANEIMLLAYYIASIN 966 >gi|269793672|ref|YP_003313127.1| hypothetical protein Sked_03250 [Sanguibacter keddieii DSM 10542] gi|269095857|gb|ACZ20293.1| hypothetical protein Sked_03250 [Sanguibacter keddieii DSM 10542] Length = 1347 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 33/147 (22%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDD--------------ALFKESPGMIRTLYDPTCG 215 + TP+ + L+P L + + + D CG Sbjct: 569 SRANSGAHYTPKSLAQEVVRYALEPLVYRPGPHQTEDTDQWRLLDSNEILDLKVADIACG 628 Query: 216 TGGFLTDAMNHV-----------------ADCGSHHKIPPILV-PHGQELEPETHAVCVA 257 +G FL A ++ + K + +G ++ +C Sbjct: 629 SGAFLVAAAEYLAARVLQAWQSEGVRGTPHELEVKAKRQVVAQCLYGADINGMAVEMCKL 688 Query: 258 GMLIRRLESD-PRRDLSKNIQQGSTLS 283 + + L+ D P + + G++L Sbjct: 689 SLWLVSLDPDQPFSFVDDKVLHGNSLL 715 >gi|154687069|ref|YP_001422230.1| YtxK [Bacillus amyloliquefaciens FZB42] gi|154352920|gb|ABS74999.1| YtxK [Bacillus amyloliquefaciens FZB42] Length = 328 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 39/245 (15%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 TL DP CGTG L A N ++D + G E++ + A ++ Sbjct: 116 RKGLTLLDPACGTGNLLLTAANQLSDKAAKS--------FGIEIDDVLLKIAYAQANLQE 167 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 E + +L + + + P G + D+ A E K E Sbjct: 168 KEMELFCQ--------DSLQP--LFIEPADAVICDLPVGY-YPNDEGAEAFELKADEGHS 216 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383 F LF+ + GG ++ + LF+ +++R+ E Sbjct: 217 FAHH---------LFIEQSVKHTKP----GGYLFFMIPNH-LFDSAQS---DKLKRFFAE 259 Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATDL--WTSIRNEGKK 440 I A++ LP +F A + IL + + + + L N ++R K Sbjct: 260 KVYINALLQLPATMFKDEAQAKSILILQKKGEDAKPPKQALLANLPSFANQQAMREMTAK 319 Query: 441 RRIIN 445 Sbjct: 320 LDQWI 324 >gi|296394144|ref|YP_003659028.1| type III restriction protein res subunit [Segniliparus rotundus DSM 44985] gi|296181291|gb|ADG98197.1| type III restriction protein res subunit [Segniliparus rotundus DSM 44985] Length = 1636 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 70/245 (28%), Gaps = 40/245 (16%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212 V++ +YE + ++ ++ TP VV + K G + DP Sbjct: 860 VIAELYERFFKIGFAKQADALGIVYTPVQVVDWILRAADAVSREHFGKGLTGEDVHVLDP 919 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267 GTG F+T M H E+ + V + + S Sbjct: 920 FTGTGTFITRLMQTGLVTPHDLARKYTSELHANEIMLLAYYVAAVNIESTYHALAGKTSG 979 Query: 268 PRRDLSKNIQQGSTL----SKDLFTGKRF---------------HYCLSNPPF--GKKWE 306 + I T S D F + + NPP+ G+ Sbjct: 980 DEYEPFPGIVLTDTFQISESDDTMDADMFPQNNDRITRQLATKINVVVGNPPYSVGQDSA 1039 Query: 307 KDKDA------VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG--GRAAI 358 D +A ++K +N R + + L+ ++ G G A Sbjct: 1040 NDNNANVKYPTLDKHIENTYAKRSTAT-----NKNSLYDSYIRAFRWATNRIGDKGIVAF 1094 Query: 359 VLSSS 363 V + Sbjct: 1095 VSNGG 1099 >gi|315576693|gb|EFU88884.1| N-6 DNA Methylase [Enterococcus faecalis TX0630] Length = 335 Score = 42.7 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|291166232|gb|EFE28278.1| helicase [Filifactor alocis ATCC 35896] Length = 3918 Score = 42.7 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 73/533 (13%), Positives = 155/533 (29%), Gaps = 116/533 (21%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA------RLEKAGLLY 134 Y + + ++ N + E I S+ K E I E+ +L Sbjct: 2052 YAPDDEYMGSIPPINYKTTGEDEILPPSERLKNNIEAIKVLKEIEERHSHATKEEQDILS 2111 Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED-----FMTPRDVVHLATA 189 K + G+ D S + L + A + F TP+ V+ Sbjct: 2112 KYVG-WGGLSDVFDEEKQGQWSKARDFLKENLSQSEYDAARESTLTAFYTPKVVIDSIYK 2170 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + +P+ GTG FL + + +G EL+ Sbjct: 2171 --------ALSNMGFESGNILEPSMGTGRFLGNLPESMQSSK----------FYGVELDS 2212 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + + + + NI Q + F+ F + N PFG + Sbjct: 2213 ISGRIA------------SKLYPNANI-QIKGFEETTFSNNLFDIAIGNVPFG-----EY 2254 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 ++E++ + L + K GG A + NG Sbjct: 2255 KISDREYERN---------------NFLIHDYFFAKTLDKVRSGGVVAFIT-----SNGT 2294 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQ--- 423 ++RR++ E + LP + F T + + + L R + + Sbjct: 2295 MDKKSEDVRRYISERAEFLGAIRLPNNTFKGEAGTEVTSDILFLKKRDRLLKLDEDWIKL 2354 Query: 424 ------------LIN------------ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459 ++ ++ T++ + + + I +I S Sbjct: 2355 DTDEKGLSYNKYFVDNPDMVLGNMEEVSSRFGTALACIADENITLKEQLEAAIKNIKGSY 2414 Query: 460 ENGK------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501 E + +S + +R +++ L ++ + ++ A LE + Sbjct: 2415 EKVELNNEFETETILADDSVKNYSYAVIDDKVYFRENSIMQKLDLNKVDEEKVKAYLEIE 2474 Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 T R++ + + D Q+ + + K I +++A + Sbjct: 2475 KTLRQVIAYQKEDYSDTEIKEKQEDLNRLYDDFSKKYGILNSKANKKLFREDA 2527 >gi|288958832|ref|YP_003449173.1| hypothetical protein AZL_019910 [Azospirillum sp. B510] gi|288911140|dbj|BAI72629.1| hypothetical protein AZL_019910 [Azospirillum sp. B510] Length = 1013 Score = 42.7 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 19/119 (15%) Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 V V+ +YE LI R + G ++ TP LA ++ D ++ Sbjct: 284 FRLSEVESDVLKILYESLIDR---DERHGLGEYYTPD---WLAAKVVRHAVDRPLEQ--- 334 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCV 256 + DP CG+G FL A+ H + P G ++ P + Sbjct: 335 ---RVMDPACGSGTFLFHAIRHFLAEAEEAGLEPDRRALEACGYVAGTDIHPVAVIIAR 390 >gi|325299275|ref|YP_004259192.1| hypothetical protein Bacsa_2164 [Bacteroides salanitronis DSM 18170] gi|324318828|gb|ADY36719.1| hypothetical protein Bacsa_2164 [Bacteroides salanitronis DSM 18170] Length = 1021 Score = 42.7 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 65/235 (27%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-------- 154 Y+ +FE D A ++ + FS D Sbjct: 309 YLNG------GLFER-DEEDEPESRFPADYFKRLFQFFSEYNFTIDENDPNDAEVGVDPE 361 Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--------------------ALLLD 193 + I+E+L+ E ++ F TP+++V +L Sbjct: 362 MLGKIFENLL-----EDNKDKGAFYTPKEIVRYMCQESLIAYLETNTSVAKDKIRQFVLS 416 Query: 194 PDDALFKESPGMI---------RTLYDPTCGTGGFLTDAMNHVA--------DCGSHHKI 236 P++ + S + DP G+G F +N + + +I Sbjct: 417 PEEGVADISENKKPKLLAALEEVKICDPAIGSGAFPMGLLNELLHCREVLSGEHYDRAEI 476 Query: 237 PPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSK 284 +G ++E + + + + N I QG++L + Sbjct: 477 KKNIIQNNIYGVDIEKGAVDIARLRFWLSIVVDEETPSPLPNLDYKIMQGNSLIE 531 >gi|148379249|ref|YP_001253790.1| restriction endonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153932045|ref|YP_001383621.1| restriction endonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153937273|ref|YP_001387170.1| restriction endonuclease family protein [Clostridium botulinum A str. Hall] gi|148288733|emb|CAL82816.1| putative DNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928089|gb|ABS33589.1| restriction endonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152933187|gb|ABS38686.1| restriction endonuclease family protein [Clostridium botulinum A str. Hall] Length = 741 Score = 42.7 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 20/172 (11%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135 F N + L ++ N + YI + + DF + L K Sbjct: 92 LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNIFYRYNIFLNK 144 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I +G + + + IYE +I E + F TP ++ + Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 F L D + G G F+ A + + + I + + Q + Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE-NIQNLQEKYKQNI 245 >gi|148654630|ref|YP_001274835.1| hypothetical protein RoseRS_0460 [Roseiflexus sp. RS-1] gi|148566740|gb|ABQ88885.1| hypothetical protein RoseRS_0460 [Roseiflexus sp. RS-1] Length = 1373 Score = 42.3 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 27/138 (19%) Query: 172 EGAEDFMT-PRDVVHLAT---------ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + T P V L L DA +E+ + + DP CG+G FL Sbjct: 484 KTTGSYYTRPELVQELIASALEPVLAQRLASAGRDAAAREAALLSIRVCDPACGSGHFLL 543 Query: 222 DAMNHVADCGSHHKIPP----------------ILVPHGQELEPETHAVCVAGMLIRRLE 265 A + + + G +L P +C + I Sbjct: 544 AAARRLGRELARIRAGDDEPSPAQFRHAVRDVIRRCIFGVDLNPLAVDLCKLALWIEGHA 603 Query: 266 SD-PRRDLSKNIQQGSTL 282 + P L +I+ G+ L Sbjct: 604 AGLPLSFLDHHIRCGNAL 621 >gi|157961100|ref|YP_001501134.1| hypothetical protein Spea_1272 [Shewanella pealeana ATCC 700345] gi|157846100|gb|ABV86599.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345] Length = 1353 Score = 42.3 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 29/140 (20%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTD----- 222 + TPR + + L P E+P + + DP G+G FL + Sbjct: 569 RRSGSHYTPRSLTAPIVSKTLQPLLRCLGETPSAEQILELKICDPAMGSGAFLVECCRQL 628 Query: 223 AMNHVADCGSHHKIP-------------------PILVPHGQELEPETHAVCVAGMLIRR 263 A VA G +I +G + + + + Sbjct: 629 ADEVVAAWGRTQEIENIAVNCPEGDVVAHARRLVAQCCLYGVDKNIMAVQLAKLSLWLFT 688 Query: 264 LESD-PRRDLSKNIQQGSTL 282 L + P L N++ G +L Sbjct: 689 LARELPFTFLDHNLRYGDSL 708 >gi|88603151|ref|YP_503329.1| type IIS restriction enzyme [Methanospirillum hungatei JF-1] gi|88188613|gb|ABD41610.1| type IIS restriction enzyme [Methanospirillum hungatei JF-1] Length = 612 Score = 42.3 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 71/258 (27%), Gaps = 54/258 (20%) Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDNAKAIFEDFDFSS 122 D + K +F + + L S L Y+ +FE S Sbjct: 114 DPDILTKALDLTFLDIDREHVLDLKSDGRHEELFRYLFLRLCNYLHTTMPFLFEPIQDYS 173 Query: 123 TI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF-- 177 + RL + ++ + I D ++ IY+ I + + + + Sbjct: 174 ELLFPDRLLHTD---SMLRDLNTIIPEDDWRETEIIGWIYQDYIAEKKDVLIKAKKQYTA 230 Query: 178 ---------MTPRDVVHLATALLL------------------------DPDDALFKESPG 204 TP+ +V L + + K S Sbjct: 231 DQIPAVTQLFTPKWIVQYMVENSLGRLWMLNRPHSRLYERMEYYIRPDEQETDFLKISSP 290 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCV 256 + DP CG+G L A + + + + +G E++ ++ Sbjct: 291 EELKVCDPACGSGHILVYAFDLLYEIYKEEGYLEQEIPEFILTHNLYGIEIDKRAGSLAA 350 Query: 257 AGMLIRRLESDPRRDLSK 274 ++++ D + Sbjct: 351 FALVMKARRMDKKFFDHP 368 >gi|332674294|gb|AEE71111.1| DNA methylase [Helicobacter pylori 83] Length = 2805 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 91/305 (29%), Gaps = 58/305 (19%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHL-----IRRFGSEVSEGAEDFMTPRDVVHLATA 189 +I FSG ++ L F S + + TP L Sbjct: 925 EILSQFSGWGGLESYFKKDQRPEEFKELNALLTKDEFRRAYSSTRDAYYTP----KLVID 980 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + D L + + +++P+ GTG F+ +H G EL+P Sbjct: 981 SIYHGLDQLGFNNDNHQKEIFEPSLGTGKFI-----------AHAPSDKNYRFMGTELDP 1029 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + + L N +T ++ + + + NPP+G Sbjct: 1030 ISANISK--------------FLYPNQVIQNTALENHQFYQEYDAFVGNPPYGNHKIYSS 1075 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + E +++ FL +L+ G A V+SS + Sbjct: 1076 NDKELSNESVHNY---------------FLGKAIKELKDD----GIGAFVVSSWFM---- 1112 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 S ++R + +N + LP +F T I+ +K + A Sbjct: 1113 -DSKNPKMREHIAQNATFLGAIRLPNSVFKATGAEVSSDIVFFKKGVDEATNQSFTKAMP 1171 Query: 430 LWTSI 434 + I Sbjct: 1172 YYDKI 1176 >gi|154795688|gb|ABS86814.1| putative helicase/DNA methyltransferase [Helicobacter cetorum] Length = 4043 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 103/333 (30%), Gaps = 72/333 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F + + + TP L + + L + + +++P+CGTG FL A Sbjct: 2049 QEFEKALLSTRDAYYTP----KLVIDSIYAGLEQLGFNNDDNKKEIFEPSCGTGKFLAYA 2104 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 G EL+P + + + L N + + Sbjct: 2105 P-----------SDKNYHFVGTELDPISAGIS--------------QFLYPNQRIENKAL 2139 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 ++ + + + NPP+G+ + +E + FL Sbjct: 2140 QNYDFYQDYDAFIGNPPYGQHKIYSSNDMELSGASIHNY---------------FLGKAI 2184 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403 +L+ G A V+SS L + S++R + + + LP +F T Sbjct: 2185 KELKED----GIGAFVVSSWFL-----DAKNSKMREHIAKQATFLGAIRLPNSVFKGTGA 2235 Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-------------EGKKRRIINDDQRR 450 I+ +K ++ + + + K + D + Sbjct: 2236 EVTSDIVFFKKGVNSEINQDFTHSKLYYEDLIKALNNYHAKAIEILQENKLDNLVDRAKL 2295 Query: 451 QILDIYVSREN----GKFSRML--DYRTFGYRR 477 I++I + N + S D TFGY Sbjct: 2296 NIINILANYFNLKPQNEQSDFYNIDTSTFGYSE 2328 >gi|325066260|ref|ZP_08124933.1| putative helicase [Actinomyces oris K20] Length = 1703 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 63/264 (23%), Gaps = 48/264 (18%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDP 212 V++ +YE S+ ++ TP +V + + DP Sbjct: 876 VITELYEKFFSLAFSKTAKSLGIVYTPVQIVDFILRSVDWLARTHLGRGITDEGVHVLDP 935 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------------- 259 GTG F+ + + H E+ + + A + Sbjct: 936 FTGTGTFIVRLLQSGLISKADLARKYAGELHANEILLLAYYIAAANIEVTYRDLMRSDTP 995 Query: 260 LIRRLESDPRRDLS---KNIQQGSTL----------------SKD----LFTGKRFHYCL 296 L ESDP + I T + D K + Sbjct: 996 LADGEESDPAQAGYTPFDGIVLADTFQMTEDGDTLDQSVFVANNDRATAQLELKSIQVII 1055 Query: 297 SNPPFGKKWEKDKDAVEKEH--------KNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 NPP+ E D +H + R G K S + Sbjct: 1056 GNPPYSVGQESANDNNANQHYPSLDAKIETTYAAR-STGTNKNSLYDS--YLRAIRWASD 1112 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGS 372 G V + + A Sbjct: 1113 RVGEAGVIGFVTNGGFIDGNTADG 1136 >gi|218264045|ref|ZP_03477962.1| hypothetical protein PRABACTJOHN_03652 [Parabacteroides johnsonii DSM 18315] gi|218222335|gb|EEC94985.1| hypothetical protein PRABACTJOHN_03652 [Parabacteroides johnsonii DSM 18315] Length = 1080 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 72/241 (29%), Gaps = 47/241 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP + A F+E+ +R+ +P+ G GGFL AM Sbjct: 154 AFYTP----KFLIDTVARQIHATFRENDLQMRSFLEPSAGIGGFLPVAMPETRSYAFEKD 209 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L+ L +T A+ E T++ F Sbjct: 210 SITGLIL--ALLNDDTTALTT------GFE---------------TIADQQLEHTAFDVI 246 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + +K + + + F+ + GG Sbjct: 247 ASNIPFGNFRVFDAELWKKGGLYEQATKTIH--------NYFFVKAM-----ELLTEGGL 293 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412 A V S +R +L+ + + + LP LF T+ + + L I Sbjct: 294 LAFVTSRGIADTPSN----KFVREYLVNHADLITALRLPDTLFMPTSGIEVGSDLLIFQK 349 Query: 413 R 413 Sbjct: 350 H 350 >gi|327313863|ref|YP_004329300.1| hypothetical protein HMPREF9137_1622 [Prevotella denticola F0289] gi|326944313|gb|AEA20198.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 1491 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 111/359 (30%), Gaps = 56/359 (15%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDAIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVDSDLIVLQKQSGKEIGEG 309 Query: 422 V--QLINATDLWTSI-RNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476 + Q + + + + + + + I I R+ G + + Sbjct: 310 IEQQFVQTASVPKGDGFSIAFNHNSLFEGEWKDISHRTIATDRQMGTDPYGKPAWEYTFD 369 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 + L R + + + P+ + W + M Q++ E Sbjct: 370 GGIEDMADSLRTQLSLEVEQRFDRKL-YETGIPMTREEWQVQVDKMEQKVQGGLKTEQT 427 >gi|261879728|ref|ZP_06006155.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333601|gb|EFA44387.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 1497 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGVGAFTETFAKQAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|319951187|ref|ZP_08025028.1| DNA methylase [Dietzia cinnamea P4] gi|319435137|gb|EFV90416.1| DNA methylase [Dietzia cinnamea P4] Length = 1050 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 88/331 (26%), Gaps = 91/331 (27%) Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR------- 207 + ++Y+ L + TP V L P + Sbjct: 192 LGDMYQDL----SEYAKKKYALLQTPEFVEEFILDRTLTPALKECSPRLPSVDAEGRTGE 247 Query: 208 ---TLYDPTCGTGGFLTDAMNHVA---------DCGSHHKIPPILVPHGQELEPETHAVC 255 + DPTCG+G FL A + + + + + HG ++ P A+ Sbjct: 248 VDFKIIDPTCGSGHFLLGAFHRMLDYWRTEAPGEEATEQVRLALSSIHGVDINPFAVAIA 307 Query: 256 VAGMLI------RRLESDPRRDLSKNIQQGSTL--SKD---------------------- 285 +++ +L + G +L S+D Sbjct: 308 QFRLMVAALRATGGSSLLNVPELPLQVYAGDSLLWSEDSAGQSGFDYGDLTVDPDALASG 367 Query: 286 -------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 + + NPP+ +K + +E G + +P Sbjct: 368 AHLTTEDVAALRRTLARDHYDVVVGNPPYITVKDKTLNQRYRELYGYCKGTYALTVP--- 424 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW---LLEN----- 384 F+ + RA + G+ S R + L+E Sbjct: 425 -----FMEQFHALAKSGTLDPSRAGWI--------GQITSNSFMAREFGVPLIEEFFPRV 471 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 DL+E ++ T + NR+ Sbjct: 472 DLLE-VIDTSGAYIPGHGTPTVTLVSRNRRP 501 >gi|52081439|ref|YP_080230.1| putative RNA methylase YtxK [Bacillus licheniformis ATCC 14580] gi|52786814|ref|YP_092643.1| YtxK [Bacillus licheniformis ATCC 14580] gi|319647347|ref|ZP_08001569.1| YtxK protein [Bacillus sp. BT1B_CT2] gi|52004650|gb|AAU24592.1| putative RNA methylase YtxK [Bacillus licheniformis ATCC 14580] gi|52349316|gb|AAU41950.1| YtxK [Bacillus licheniformis ATCC 14580] gi|317390694|gb|EFV71499.1| YtxK protein [Bacillus sp. BT1B_CT2] Length = 328 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 80/265 (30%), Gaps = 40/265 (15%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYDPTCGTGGFL 220 IR+ +++ P + + TL+DP GTG L Sbjct: 73 IRK-AFQLAILKGQKDIPHPNRQMTPDTIGLFIGYLVNKFMERKKGLTLFDPAVGTGNLL 131 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 +N +A+ G E++ + ++ E + S Sbjct: 132 LAVLNQLAEEAGKA--------FGSEIDDVLIKLAYVQANLQEKEIELFNQDSLQPIFM- 182 Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 + + + P G + D+ A E K E F LF+ Sbjct: 183 ---------EHADAVICDLPVGY-YPDDESARAFELKADEGHSFSHH---------LFIE 223 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 + GG ++ + LF ++R +L N I A++ LP +F Sbjct: 224 QSLTYTKP----GGYLFFMIPNH-LFESGQS---EKLRTFLKNNAHINAVLQLPLSIFKD 275 Query: 401 TNIATYLWILSNR-KTEERRGKVQL 424 A + +L + + +V L Sbjct: 276 EAHAKSILVLQKHGEQAKAPKQVLL 300 >gi|313888375|ref|ZP_07822043.1| helicase C-terminal domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845572|gb|EFR32965.1| helicase C-terminal domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 3466 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 60/397 (15%), Positives = 117/397 (29%), Gaps = 70/397 (17%) Query: 29 TDFGKVILPFTLLRRLECALEP-TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT---S 84 D+ L + + E + + + E+ N + E K N S Sbjct: 1598 NDYKN--LDLEVYKSSEKEKQSIDKGELVEQISFEDIDNNNEEEVKKDKKTDRENIEGVS 1655 Query: 85 EYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143 E SL N NL ++ A + + + S AR ++ +L K Sbjct: 1656 EVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKESRSARKDEQEILAKYIGWGGLS 1715 Query: 144 ELHPDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 ++ + + + E+L + F TP+ V+ Sbjct: 1716 DIFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE--------SL 1767 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + +P+ GTG F+ + + + +G EL+ + + Sbjct: 1768 SNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK--- 1814 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + NI Q + F+ F + N PFG + ++E++ Sbjct: 1815 ---------ELYPNANI-QIKGFEETSFSNNLFDVAIGNIPFG-----EFKVADREYERN 1859 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 + L + K GG A + +G ++RR Sbjct: 1860 ---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDVRR 1899 Query: 380 WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 ++ E + LP F T + + + L R Sbjct: 1900 YISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKKR 1936 >gi|299783015|gb|ADJ41013.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 289 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + A K+ K + I+L + + + + + + A MTP + L Sbjct: 1 MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L+ + DP GT LT MNH+ + +G + Sbjct: 59 MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + +V + +DL + + + +++ P G Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDLVVADLPVGY--- 154 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 ++ R G S + + + + GG + L LF Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLLPGGF--GVFLVPKALF 202 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424 + +G + W+ ++ ++ LP +LF + +A L +L + T + GKV L Sbjct: 203 QSKETAG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258 >gi|2318061|gb|AAB66474.1| YeeA [Bacillus subtilis] Length = 879 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 74/257 (28%), Gaps = 58/257 (22%) Query: 157 NIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATALLLDPD---------DALFKESPGMI 206 +I+ +I+ E T + L D K + Sbjct: 274 DIFGSMIQAVASEESRSYLGMHYTSVPNIMKVIKPLFLDKLNQSFLDAYDDYTKLENLLT 333 Query: 207 R----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELE 248 R +DP CG+G FL + + +G E+E Sbjct: 334 RIGKIKFFDPACGSGNFLIITYKELRRMEINIIKRLQELLGEYLYVPSVTLSQFYGIEIE 393 Query: 249 PETHAVCVAGMLI--RRLESDPRR------------DLSKNIQQGSTLSKDLFT-----G 289 H V + I ++ + + + +I+ + + + G Sbjct: 394 DFAHDVAKLSLWIAEHQMNEELKNEVHNAVRPTLPLHTAGDIRCANAIRVEWTEVCPAQG 453 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLE 347 Y NPP+ ++ KEHK+ L FG K+ +G ML + Sbjct: 454 SEEVYVFGNPPYLGSKKQ-----NKEHKSDMLSIFG----KVKNGKMLDYISAWFYFGAK 504 Query: 348 LPPNGGGRAAIVLSSSP 364 + A V ++S Sbjct: 505 YASTTNAKVAFVSTNSV 521 >gi|16077744|ref|NP_388558.1| restriction type II methylase [Bacillus subtilis subsp. subtilis str. 168] gi|221308513|ref|ZP_03590360.1| hypothetical protein Bsubs1_03813 [Bacillus subtilis subsp. subtilis str. 168] gi|221312836|ref|ZP_03594641.1| hypothetical protein BsubsN3_03769 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317760|ref|ZP_03599054.1| hypothetical protein BsubsJ_03723 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322039|ref|ZP_03603333.1| hypothetical protein BsubsS_03809 [Bacillus subtilis subsp. subtilis str. SMY] gi|81341851|sp|O31504|YEEA_BACSU RecName: Full=Putative DNA methyltransferase yeeA; AltName: Full=Modification methylase BsuMORF677P; Short=M.BsuMORF677P gi|2632990|emb|CAB12496.1| putative restriction type II methylase [Bacillus subtilis subsp. subtilis str. 168] Length = 879 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 74/257 (28%), Gaps = 58/257 (22%) Query: 157 NIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATALLLDPD---------DALFKESPGMI 206 +I+ +I+ E T + L D K + Sbjct: 274 DIFGSMIQAVASEESRSYLGMHYTSVPNIMKVIKPLFLDKLNQSFLDAYDDYTKLENLLT 333 Query: 207 R----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELE 248 R +DP CG+G FL + + +G E+E Sbjct: 334 RIGKIKFFDPACGSGNFLIITYKELRRMEINIIKRLQELLGEYLYVPSVTLSQFYGIEIE 393 Query: 249 PETHAVCVAGMLI--RRLESDPRR------------DLSKNIQQGSTLSKDLFT-----G 289 H V + I ++ + + + +I+ + + + G Sbjct: 394 DFAHDVAKLSLWIAEHQMNEELKNEVHNAVRPTLPLHTAGDIRCANAIRVEWTEVCPAQG 453 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLE 347 Y NPP+ ++ KEHK+ L FG K+ +G ML + Sbjct: 454 SEEVYVFGNPPYLGSKKQ-----NKEHKSDMLSIFG----KVKNGKMLDYISAWFYFGAK 504 Query: 348 LPPNGGGRAAIVLSSSP 364 + A V ++S Sbjct: 505 YASTTNAKVAFVSTNSV 521 >gi|16125079|ref|NP_419643.1| hypothetical protein CC_0826 [Caulobacter crescentus CB15] gi|221233806|ref|YP_002516242.1| DNA modification methyltransferase-like protein [Caulobacter crescentus NA1000] gi|13422077|gb|AAK22811.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962978|gb|ACL94334.1| DNA modification methyltransferase-related protein [Caulobacter crescentus NA1000] Length = 985 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 35/193 (18%) Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------------VPHGQELEPETHA 253 + DP CG+G FL A++ + D + G E+E Sbjct: 407 FRVLDPACGSGNFLYVALHALKDIERRALVDAERLGLEVPTPRVGLACVRGIEIEEYAAE 466 Query: 254 VCVAGMLIRRLE----------SDPRRDLSKNIQQGSTLSK-DLFTGKR--FHYCLSNPP 300 + + I L+ ++P I+ L D + + NPP Sbjct: 467 LARVTLWIGDLQWHAKNNYRGFAEPILSSLDQIECRDALLNADGTEAQWPAVDVIVGNPP 526 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAI 358 F ++ +D + ++ + +P +D F+ + K G RA + Sbjct: 527 F-LGSKRLRDGLGNDYVERLFSTYRGKVPAEAD----FVAYWIAKAWELVQAQQGRRAGL 581 Query: 359 VLSSSPLFNGRAG 371 V ++S G A Sbjct: 582 VTTNSV--RGGAS 592 >gi|304439303|ref|ZP_07399219.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372222|gb|EFM25812.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 3645 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 58/394 (14%), Positives = 118/394 (29%), Gaps = 72/394 (18%) Query: 36 LPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87 LPF+ L+ ++ L R +K L + ++ + SE S Sbjct: 1778 LPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNDLIRTDRENIEGVSEVS 1837 Query: 88 LSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L N L ++ A + + + + AR ++ +L K ++ Sbjct: 1838 LENYKIINEEEILPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGGLSDVF 1897 Query: 147 PDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + + E+L + F TP+ V+ Sbjct: 1898 DEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE--------SLSNL 1949 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 I + +P+ GTG F+ + + + +G EL+ + + Sbjct: 1950 GFEIGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDRISGQIAK------ 1993 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + NI Q + F+ F + N PFG + ++E++ Sbjct: 1994 ------ELYPNANI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKVADREYERN--- 2038 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 + L + K GG + + +G ++RR++ Sbjct: 2039 ------------NFLIHDYFFAKTLDKVRDGGIISFIT-----SSGTMDKKSEDVRRYIS 2081 Query: 383 ENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 E + LP F T + + + L R Sbjct: 2082 ERAEFLGAIRLPNRTFKGVAGTEVTSDIIFLKKR 2115 >gi|227510222|ref|ZP_03940271.1| DNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189874|gb|EEI69941.1| DNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 356 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 35/210 (16%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 ++ DP GTG LT N + I G E + + I+ Sbjct: 139 QKQLSMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIENDDAMFELAAGSFDIQH 193 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + ++ + E+ G R Sbjct: 194 IHAELF-----------------HEDAIQNVLAPVVDIAVSDLPVGYYPIDENTKGFNTR 236 Query: 324 FGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382 +DG S + + + ++ GG L S +F S ++ +W+ Sbjct: 237 -------SNDGHSYVHHLLIEFAMDHVKKGG--YGFFLVPSQIF---KTSEAKQLLKWMQ 284 Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSN 412 N ++ ++ LPT+LF + IL N Sbjct: 285 GNVYLQGLLNLPTELFQNKASQKAIMILQN 314 >gi|94985034|ref|YP_604398.1| type III restriction system methylase [Deinococcus geothermalis DSM 11300] gi|94555315|gb|ABF45229.1| type III restriction system methylase [Deinococcus geothermalis DSM 11300] Length = 213 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 31/157 (19%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 +LI+ + + TP +V L+ + + +P CG+G F Sbjct: 1 MNLIK--SKQRVADHGEVFTPPWLVEAMLDLVGGE-------TERIDSRFLEPACGSGNF 51 Query: 220 LTDAMNH----VADCGSHHKIPPILV-------PHGQELEPETHAVCVAGM--LI---RR 263 L + V +G EL + A C A + ++ Sbjct: 52 LVAVLRRKLAAVEVKYGTSNFEKRHYALLALMCLYGIELLADNVAECRANLQEILAEYLG 111 Query: 264 LESDPRRDLSK------NIQQGSTLSKDLFTGKRFHY 294 L+ D + N+ G L G+ + Sbjct: 112 LDEDDDLYRAASYVLAQNLVHGDALRMQTHGGQAIIF 148 >gi|298383504|ref|ZP_06993065.1| DNA methylase [Bacteroides sp. 1_1_14] gi|298263108|gb|EFI05971.1| DNA methylase [Bacteroides sp. 1_1_14] Length = 1076 Score = 42.3 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ ++L T ++R L D + + + F Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + K+G GR + K GG Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296 Query: 413 R--KTEERRGKVQLI 425 K E + + + Sbjct: 297 NLSKKEMSQDERLMT 311 >gi|255016390|ref|ZP_05288516.1| putative DNA methylase [Bacteroides sp. 2_1_7] gi|319644400|ref|ZP_07998854.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A] gi|317384120|gb|EFV65095.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A] Length = 1943 Score = 42.3 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 86/287 (29%), Gaps = 60/287 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPARILEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D + + I+ F Sbjct: 148 PDADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIE--------KPFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + ++ GR + K G Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDTVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + V LP +LF T + + L +L Sbjct: 240 GIMAFITSQGVL-----NSTKTSVRNELFKQANLVSAVRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455 K E + + + + + G +I+ Sbjct: 295 QKHLNKKEMSQDERLMT----VIQTDTATGLTDNAYFIHHPERIVHT 337 >gi|163785432|ref|ZP_02180043.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I [Hydrogenivirga sp. 128-5-R1-1] gi|159879301|gb|EDP73194.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I [Hydrogenivirga sp. 128-5-R1-1] Length = 150 Score = 42.3 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 23/149 (15%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + F TP +V T L+ + L + +P CG FL + Sbjct: 22 KKIWGIFFTPEWIVDFMTNLIDENKLNLSDLK------ILEPACGICQFLHG----IRKN 71 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 H I G E+ E +I +E + + + I L + T Sbjct: 72 KKHIFIHASKRI-GVEINKE---------IIDYVEQNNSNNDIQIILHDYLLWE---TDS 118 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 RF + NPP+G + +++ + + Sbjct: 119 RFDVIIGNPPYGIPSLSEHYSIKVDSETK 147 >gi|261885495|ref|ZP_06009534.1| restriction and modification enzyme CjeI [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 727 Score = 42.3 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 70/240 (29%), Gaps = 33/240 (13%) Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 K S+ F + + AI+L SS L + R +L N I + Sbjct: 8 KSSNAIECF---FIERANRLLKSNSKVAIILPSSIL---NKDGVYEKTREIILRNFDIIS 61 Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449 I L ++ F T T + LS K G + + +++ + ++ Sbjct: 62 ITELGSNTFGATGTNTVILFLSK-KQTYANGF-----NSQSYENLKENIESSLDFSNLYL 115 Query: 450 RQILDIYVSR---ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506 + L Y + +F L GY I S + K L Sbjct: 116 LEGLLAYCEFMGYKKDEFREFLSG---GYGEI-------YSHDIFKEYLNEFRNSSALSG 165 Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566 L + + + + Q+ F+ + + K L K I + Sbjct: 166 LKKSRRYKDSNEKEALEQK--------EFLNFCLNLEKEKILFFSLVKDTKTLIIKSPSE 217 >gi|320527864|ref|ZP_08029032.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204] gi|320131801|gb|EFW24363.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204] Length = 2915 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 59/405 (14%), Positives = 114/405 (28%), Gaps = 79/405 (19%) Query: 33 KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 VIL RLE L+ + I+ K ++F T E L Sbjct: 1053 DVIL-----YRLESDLDRLFQNITYTNPE---KTIEEVEIKKADAHNFKITEETLPEKLS 1104 Query: 93 S-TNTRNNLESY--IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149 +NLE+ + + + D + +++ G L + + Sbjct: 1105 PSERLNSNLEAISMLNRIERGERDL--DINAQEVLSKYVGWGGLADVFDESKEGQWEAAR 1162 Query: 150 VPDRVMSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 S + E+L + + F TP+ V+ Sbjct: 1163 ------SFLKENLSPSEYEAARESTLTAFYTPKTVIDSVYK--------TLAGMGFKSGN 1208 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + +P+ G G F+ + + + +G EL+ + + Sbjct: 1209 ILEPSMGVGNFIGNLPDEM----------SRSKFYGVELDSVSGRIGKL----------L 1248 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 + I+ + F+ F + N PFG+ D+D + + Sbjct: 1249 YPESEVQIKG---FEETTFSNNFFDAVIGNVPFGEYKVNDRDYNKNNFLIHDY------- 1298 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 K GG A + +G + +RR++ Sbjct: 1299 -------------FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYIAARAEFL 1340 Query: 389 AIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430 + LP D F T + + + L R + R + + A D Sbjct: 1341 GAIRLPNDTFKGVAGTEVTSDIIFLKKRDSIRERDEDWIHLAEDE 1385 >gi|218263717|ref|ZP_03477737.1| hypothetical protein PRABACTJOHN_03427 [Parabacteroides johnsonii DSM 18315] gi|218222543|gb|EEC95193.1| hypothetical protein PRABACTJOHN_03427 [Parabacteroides johnsonii DSM 18315] Length = 841 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 71/260 (27%), Gaps = 52/260 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITCTIAEALHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ D +Q + K F Sbjct: 152 IMAFEK----------------DLMTGKILGHLHPDQKVRVQGFEKIEKPF--TDYFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + E + P + K GG Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSQD-------PARRSAQKAIHNYFFLKSLDAVREGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L + IR +++ + + LP +LF T + + L IL Sbjct: 242 VAFITSQGVL----DAPSNAPIREYMMSQANLVGVARLPNNLFTDNAGTEVGSDLIILQK 297 Query: 413 R---KTEERRGKVQLINATD 429 K E + + Sbjct: 298 NSGKKRELYYNEKLFMQTEQ 317 >gi|52549321|gb|AAU83170.1| adenine specific DNA methyltransferase [uncultured archaeon GZfos26G2] Length = 1034 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 78/261 (29%), Gaps = 43/261 (16%) Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPTCG 215 Y+ + + E + TP +VV + F + G+ L DP G Sbjct: 316 YDTFLGEYNPEERAKLGVYYTPPEVVDYIVKSIHKLLKEKFGKEKGLAEEGLKLLDPAAG 375 Query: 216 T--------GGFLTDAMNHVA--DCGSHHKIPPILVPHGQELEPETHAVC--VAGMLI-R 262 T G L + ++ + K + + E++ + + M + + Sbjct: 376 TLTFIIRALGRALLELQDYHLGGMIPLNIKNHILADFYAFEIQVVPYIIGHLRVAMSLEK 435 Query: 263 RLESDPRRDLSKNIQQGSTLSKDL--------------------FTGKRFHYCLSNPPFG 302 + D +TL + L NPP+ Sbjct: 436 VWNYEFEEDDRFQFYLTNTLEMKEPEQELLLQQLTEEGREAMYVKEKEPILVVLGNPPYS 495 Query: 303 KKWEKDKDAVEK-EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 E + +EK + + +SD + F+ K+ G + + Sbjct: 496 VSSENKSEFIEKLMADYKREVKKERNIQPLSDDYIKFIRFAHWKISQTGK--GIFGYITN 553 Query: 362 SSPLFNGRAGSGESEIRRWLL 382 +S L +G G +R+ LL Sbjct: 554 NSYL-SGIIHRG---MRKELL 570 >gi|294102319|ref|YP_003554177.1| hypothetical protein Amico_1336 [Aminobacterium colombiense DSM 12261] gi|293617299|gb|ADE57453.1| conserved hypothetical protein [Aminobacterium colombiense DSM 12261] Length = 1148 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 22/236 (9%) Query: 185 HLATALLLDPDD-ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243 L +L++D DD K P + + G ++ + Sbjct: 608 RLWLSLIVDEDDMDDIKPLPNLDYKI------VCGDSLLGYPYIPRGLDKVEELKRQFFD 661 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPF 301 + + + I L + +L I S+ F ++NPP+ Sbjct: 662 EVDPNKKRNLRNRIDEAIFGLFKNTEGNLGYKVTIDYKINFSEVFSQNGGFDVVIANPPY 721 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 + + + ++ +K+ D LF + L+ ++ Sbjct: 722 IQLQKLRGNPLQNAYKSQNFEVHNA----NGDIYCLFYEKGMDILKK-------CGHLVF 770 Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417 + RA GE ++RR+ LE + ++ ++ L +F + T + I+ K + Sbjct: 771 ITSNKWMRAAYGE-KLRRFFLEYNPLQ-LIDLGPGIFDSATVDTNILIIQKNKNKN 824 >gi|225032084|gb|ACN79575.1| DraRI [synthetic construct] Length = 956 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 76/277 (27%), Gaps = 60/277 (21%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLA 187 LY + K + ++ +++ + + + T D++ + Sbjct: 266 NRDELYLLHKAALENNW--ARIQPQIFGVLFQSSMDK---KEQHAKGAHYTSEADIMRVV 320 Query: 188 TALLLDPDDALFKESPGMIR-----------TLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 ++ P + + + DP CG+G FL A + + + Sbjct: 321 LPTIVTPFQRQIEAATTQKELRAILDELASFQVLDPACGSGNFLYVAYRELRRLEARALL 380 Query: 237 PPI----------------LVPHGQELEPETHAVCVAGMLI---------------RRLE 265 HG E +P + + + L+ Sbjct: 381 RLRDLSAPGTALPPARVSIRQMHGLEYDPFGVELAKVTLTLAKELAIREMHDLLGNTGLD 440 Query: 266 SD---PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 D P +L I QG L R + NPPF K + ++ K Sbjct: 441 FDQPLPLDNLDDRIVQGDALFTPW---PRVDAIVGNPPFQSKNKLQREMGAAYVKKLRAH 497 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 P +P ++ K G RA +V Sbjct: 498 --YPDVP--GRADYC--VYWIRKAHDQLGSGQRAGLV 528 >gi|148292178|dbj|BAF62893.1| hypothetical protein [uncultured bacterium] Length = 1027 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 15/142 (10%) Query: 114 IFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI--RRFGSEV 170 IFE D + E A +L + + I + +++ LI R+F Sbjct: 293 IFEIARDIIKPLDPQEAANILGILARAALKIRGMGASGASDFTGLVFQRLIADRKF---- 348 Query: 171 SEGAEDFMTPRDVVHLATALLLD-----PDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 F T L L +D P G ++ D CGTGG L A + Sbjct: 349 ---LATFYTLPASAELLAGLAIDKEGNFPMKQRANGEAGPDFSIADFACGTGGLLVAAAH 405 Query: 226 HVADCGSHHKIPPILVPHGQEL 247 + + + H + Sbjct: 406 RIGNIYAEKHAVDRDELHKMMM 427 >gi|15807258|ref|NP_295988.1| DNA modification methyltransferase-like protein [Deinococcus radiodurans R1] gi|6460073|gb|AAF11813.1|AE002059_3 DNA modification methyltransferase-related protein [Deinococcus radiodurans R1] Length = 840 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 76/277 (27%), Gaps = 60/277 (21%) Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLA 187 LY + K + ++ +++ + + + T D++ + Sbjct: 266 NRDELYLLHKAALENNW--ARIQPQIFGVLFQSSMDK---KEQHAKGAHYTSEADIMRVV 320 Query: 188 TALLLDPDDALFKESPGMIR-----------TLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 ++ P + + + DP CG+G FL A + + + Sbjct: 321 LPTIVTPFQRQIEAATTQKELRAILDELASFQVLDPACGSGNFLYVAYRELRRLEARALL 380 Query: 237 PPI----------------LVPHGQELEPETHAVCVAGMLI---------------RRLE 265 HG E +P + + + L+ Sbjct: 381 RLRDLSAPGTALPPARVSIRQMHGLEYDPFGVELAKVTLTLAKELAIREMHDLLGNTGLD 440 Query: 266 SD---PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 D P +L I QG L R + NPPF K + ++ K Sbjct: 441 FDQPLPLDNLDDRIVQGDALFTPW---PRVDAIVGNPPFQSKNKLQREMGAAYVKKLRAH 497 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 P +P ++ K G RA +V Sbjct: 498 --YPDVP--GRADYC--VYWIRKAHDQLGSGQRAGLV 528 >gi|224586490|ref|YP_002640391.1| hypothetical protein BVAVS116_O0003 [Borrelia valaisiana VS116] gi|224497094|gb|ACN52728.1| hypothetical protein BVAVS116_O0003 [Borrelia valaisiana VS116] Length = 1065 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 28/184 (15%) Query: 98 NNLESYI-ASFS--DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-------- 146 +N+ES+I +FS N + +D S L +L I + I+ Sbjct: 265 SNIESFIPTNFSLIQNIIKLIKDIHKDSEFDCL--KWILESIISIVNNIDTELIFNEFSF 322 Query: 147 --PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 YE + ++ + + + + TP +V+ + L + F G Sbjct: 323 TSNKENSKDPYLYFYEDFLAKYDANLRKAKGVYYTPSSIVNFIVSSLNEILKGEFNLDKG 382 Query: 205 M----IRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPPIL-------VPHGQELEPET 251 T+ D GTG FL + + + + +G E Sbjct: 383 FANKDKVTVLDFATGTGTFLLEVIRTIILKEIPKESGRQKDYINLHILKNLYGFEYLMAP 442 Query: 252 HAVC 255 +AV Sbjct: 443 YAVA 446 >gi|224024415|ref|ZP_03642781.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM 18228] gi|224017637|gb|EEF75649.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM 18228] Length = 1913 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 49/247 (19%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ +L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ D IQ + K F Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPDQKVRIQGYEKIEKPFMN--HFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + ++ R + + FL K GG Sbjct: 194 ISNIPFGDVAVFDPEFTNSH----DMARRSA---SKTIHNYFFL-----KSLDAVREGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L + IR +++ + + + LP +LF T + + L IL Sbjct: 242 VAFITSQGVL----DAPTNAPIREYMMNHANLVGVARLPNNLFTENAGTEVGSDLIILQK 297 Query: 413 RKTEERR 419 + + Sbjct: 298 NSGKNGK 304 >gi|184155025|ref|YP_001843365.1| hypothetical protein LAF_0549 [Lactobacillus fermentum IFO 3956] gi|183226369|dbj|BAG26885.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 289 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + A K+ K + I+L + + + + + + A MTP + L Sbjct: 1 MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L+ + DP GT LT MNH+ + +G + Sbjct: 59 MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + +V + +DL + + + +++ P G Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDLVVADLPVGY--- 154 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 ++ R G S + + + + GG + L LF Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLMPGGF--GVFLVPKALF 202 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424 + +G + W+ ++ ++ LP +LF + +A L +L + T + GKV L Sbjct: 203 QSKETAG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258 >gi|171780304|ref|ZP_02921208.1| hypothetical protein STRINF_02092 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281652|gb|EDT47087.1| hypothetical protein STRINF_02092 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 917 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 44/212 (20%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ Y++L+ + + D + + I+ DP Sbjct: 311 DDLTASYQNLVDKINENEDKDI------TDKTRCENRNTFIRELESLLDRISNIK-FLDP 363 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI------------------LVPHGQELEPETHAV 254 CG+G FL + +G EL+ H V Sbjct: 364 ACGSGNFLIITYKEIRRLEVKILKSLRELRQDGTIDFFETSKISLNQFYGIELDDFAHEV 423 Query: 255 CVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDL-----FTGKRFHYCL 296 + I + + + + NI QG+ L D Y + Sbjct: 424 ARLSLWIAEYQMNLEAENEINLKSAFLPLRDAGNITQGNALRLDWNEILPHQSDDEIYLI 483 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 NPP+ + +++ K F L Sbjct: 484 GNPPY-IGAKLQNKEQKEDLKGAIGEPFKYKL 514 >gi|312278240|gb|ADQ62897.1| type I restriction-modification system methyltransferase subunit [Streptococcus thermophilus ND03] Length = 147 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 13/122 (10%), Positives = 26/122 (21%), Gaps = 15/122 (12%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73 W G T + I + L V + + G + Sbjct: 2 WALLNKTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYGQDPVRALDY 61 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFS--------DNAKAIFEDFDF 120 + + +T F+ D+ + IF+ F Sbjct: 62 MKQKLGYAIQPKEFFKDWEATIHEERFNIPMISDTFGHFNQQIAFEAKDDFEGIFDGMRF 121 Query: 121 SS 122 + Sbjct: 122 DN 123 >gi|327295586|ref|XP_003232488.1| RNA methylase [Trichophyton rubrum CBS 118892] gi|326465660|gb|EGD91113.1| RNA methylase [Trichophyton rubrum CBS 118892] Length = 454 Score = 42.3 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFG 167 I E F F + ++ A + + + F+ +P T + V+ IY + R+ Sbjct: 117 EIIESFSFLAFEGPIKMVDADEKFCVFEEFAHQLASSGNPKTHTEPVLKRIY---LGRWV 173 Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 +E + R + + + + YDP GTG FL A + Sbjct: 174 TEGGRTEINTYNLKKRKYISTTSMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 A ET + L S + T + D Sbjct: 234 FGAVTCGSDIDGRSFRGKEATSNTETGVIA--NFKQYGLLS----------RFLDTFTSD 281 Query: 286 LF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 L + + F + +PP+G + + + + GEL F G+P + +F Sbjct: 282 LTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMFQ-GVPSYKRENYIF 338 >gi|304382581|ref|ZP_07365075.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304336206|gb|EFM02448.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 1497 Score = 42.3 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIAEALSAADVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+LL+N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLLQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|257090264|ref|ZP_05584625.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|256999076|gb|EEU85596.1| conserved hypothetical protein [Enterococcus faecalis CH188] Length = 335 Score = 42.3 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|328770831|gb|EGF80872.1| hypothetical protein BATDEDRAFT_24341 [Batrachochytrium dendrobatidis JAM81] Length = 473 Score = 42.3 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 16/188 (8%) Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL--SNRKTEERRGKV-QLINATDLW 431 S +R +++N ++ I+ P T +T + K + + I+ + Sbjct: 123 SFLREKVIDNGVLGWILGPP-----GTGKSTTALAFASTLDKNDWVVTWIHLYIDCYPVC 177 Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--DYRTFGYRRIKVLRPLRMSFI 489 + KK + I D ++ DI + K + Y + G + I V + Sbjct: 178 VRLEGNSKKSQEIYDSNIDKLFDILHKVDESKQHIVFIDGYTSNGQKHIDVQQACYSWLE 237 Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549 D+ + +S +++ + + ++Q+ Y W E + K Sbjct: 238 EDREKRRLV----VVCSMSSRYKAKLEEDMLLNLKQLNVYSWKEEDQFAGVMLAIKKGPD 293 Query: 550 V--KASKS 555 + K +K+ Sbjct: 294 LIRKLAKA 301 >gi|298252842|ref|ZP_06976636.1| methyltransferase [Gardnerella vaginalis 5-1] gi|297533206|gb|EFH72090.1| methyltransferase [Gardnerella vaginalis 5-1] Length = 557 Score = 42.3 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 35/139 (25%) Query: 211 DPTCGTGGFLTDAMNHVADC-------------------GSHHKIPPILVPHGQELEPET 251 DP CG+G FLT+ + + I HG E+ Sbjct: 4 DPACGSGNFLTETFLCLRKLENRAIELMLGGQGYVDLGDNNSLIKVSIDQFHGIEINDFA 63 Query: 252 HAVCVAGMLIRRLE-------------SDPRRDLSKNIQQGSTL---SKDLFTGKRFHYC 295 V + I + S NI + + L DL + R Y Sbjct: 64 VCVAKTALWIAEQQALDDTESIAGCALPHLPLHDSGNIVRANALQYDWNDLLSADRCSYV 123 Query: 296 LSNPPFGKKWEKDKDAVEK 314 + NPPF ++ K + E Sbjct: 124 IGNPPFVGQYLKSVNQTED 142 >gi|154483947|ref|ZP_02026395.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC 27560] gi|149734989|gb|EDM50875.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC 27560] Length = 2219 Score = 42.3 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 72/264 (27%), Gaps = 55/264 (20%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 + +P+ G G F + + +G E++ T + Sbjct: 688 NILEPSMGIGNFFGSMPDAMQ----------NCKLYGVEMDDVTGRIAK----------- 726 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 + + +I F F + N PFG D + + + Sbjct: 727 -QLYQNASITIA-GFEDTKFPDNFFDAAVGNVPFGDYKVYDPKYNKLNFRVHDY------ 778 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 FL +++ GG AA + + + +RR+L + + Sbjct: 779 ----------FLAKALDQIRP----GGIAAFITTKGTMDKANP-----NVRRYLAQRAEL 819 Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 + LP F IL +K E + I + +G Sbjct: 820 IGAIRLPNTAFKENAGTEVTSDILFFKKRERQID----IEPDWVHLGYTKDGIPVNSYFV 875 Query: 447 DQRRQILDI--YVSRENGKFSRML 468 + +L Y + G SR Sbjct: 876 EHPDMMLGTMEYDTGRFGDKSRYT 899 >gi|227519325|ref|ZP_03949374.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX0104] gi|227555467|ref|ZP_03985514.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis HH22] gi|229545434|ref|ZP_04434159.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX1322] gi|229549678|ref|ZP_04438403.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis ATCC 29200] gi|255972375|ref|ZP_05422961.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975478|ref|ZP_05426064.1| adenine-specific DNA methylase [Enterococcus faecalis T2] gi|256619458|ref|ZP_05476304.1| adenine-specific DNA methylase [Enterococcus faecalis ATCC 4200] gi|256762912|ref|ZP_05503492.1| adenine-specific DNA methylase [Enterococcus faecalis T3] gi|256853498|ref|ZP_05558868.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256959297|ref|ZP_05563468.1| adenine-specific DNA methylase [Enterococcus faecalis DS5] gi|256961529|ref|ZP_05565700.1| adenine-specific DNA methylase [Enterococcus faecalis Merz96] gi|256964745|ref|ZP_05568916.1| adenine-specific DNA methylase [Enterococcus faecalis HIP11704] gi|257082198|ref|ZP_05576559.1| adenine-specific DNA methylase [Enterococcus faecalis E1Sol] gi|257087188|ref|ZP_05581549.1| adenine-specific DNA methylase [Enterococcus faecalis D6] gi|257416419|ref|ZP_05593413.1| adenine-specific DNA methylase [Enterococcus faecalis AR01/DG] gi|257419664|ref|ZP_05596658.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257422229|ref|ZP_05599219.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|293382206|ref|ZP_06628148.1| adenine-specific methyltransferase [Enterococcus faecalis R712] gi|293388625|ref|ZP_06633121.1| adenine-specific methyltransferase [Enterococcus faecalis S613] gi|300861099|ref|ZP_07107186.1| N-6 DNA Methylase [Enterococcus faecalis TUSoD Ef11] gi|307272825|ref|ZP_07554072.1| N-6 DNA Methylase [Enterococcus faecalis TX0855] gi|307275922|ref|ZP_07557055.1| N-6 DNA Methylase [Enterococcus faecalis TX2134] gi|307277705|ref|ZP_07558791.1| N-6 DNA Methylase [Enterococcus faecalis TX0860] gi|307287872|ref|ZP_07567905.1| N-6 DNA Methylase [Enterococcus faecalis TX0109] gi|307295901|ref|ZP_07575733.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] gi|312900870|ref|ZP_07760164.1| N-6 DNA Methylase [Enterococcus faecalis TX0470] gi|312908302|ref|ZP_07767266.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 512] gi|312910624|ref|ZP_07769466.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 516] gi|312951276|ref|ZP_07770178.1| N-6 DNA Methylase [Enterococcus faecalis TX0102] gi|227073219|gb|EEI11182.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX0104] gi|227175407|gb|EEI56379.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis HH22] gi|229305158|gb|EEN71154.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis ATCC 29200] gi|229309470|gb|EEN75457.1| site-specific DNA-methyltransferase (adenine-specific) [Enterococcus faecalis TX1322] gi|255963393|gb|EET95869.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968350|gb|EET98972.1| adenine-specific DNA methylase [Enterococcus faecalis T2] gi|256598985|gb|EEU18161.1| adenine-specific DNA methylase [Enterococcus faecalis ATCC 4200] gi|256684163|gb|EEU23858.1| adenine-specific DNA methylase [Enterococcus faecalis T3] gi|256711957|gb|EEU26995.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949793|gb|EEU66425.1| adenine-specific DNA methylase [Enterococcus faecalis DS5] gi|256952025|gb|EEU68657.1| adenine-specific DNA methylase [Enterococcus faecalis Merz96] gi|256955241|gb|EEU71873.1| adenine-specific DNA methylase [Enterococcus faecalis HIP11704] gi|256990228|gb|EEU77530.1| adenine-specific DNA methylase [Enterococcus faecalis E1Sol] gi|256995218|gb|EEU82520.1| adenine-specific DNA methylase [Enterococcus faecalis D6] gi|257158247|gb|EEU88207.1| adenine-specific DNA methylase [Enterococcus faecalis ARO1/DG] gi|257161492|gb|EEU91452.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257164053|gb|EEU94013.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|291080390|gb|EFE17754.1| adenine-specific methyltransferase [Enterococcus faecalis R712] gi|291082000|gb|EFE18963.1| adenine-specific methyltransferase [Enterococcus faecalis S613] gi|300850138|gb|EFK77888.1| N-6 DNA Methylase [Enterococcus faecalis TUSoD Ef11] gi|306496232|gb|EFM65811.1| N-6 DNA Methylase [Enterococcus faecalis TX0411] gi|306501017|gb|EFM70324.1| N-6 DNA Methylase [Enterococcus faecalis TX0109] gi|306505584|gb|EFM74768.1| N-6 DNA Methylase [Enterococcus faecalis TX0860] gi|306507252|gb|EFM76389.1| N-6 DNA Methylase [Enterococcus faecalis TX2134] gi|306510439|gb|EFM79462.1| N-6 DNA Methylase [Enterococcus faecalis TX0855] gi|310625716|gb|EFQ08999.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 512] gi|310630810|gb|EFQ14093.1| N-6 DNA Methylase [Enterococcus faecalis TX0102] gi|311289172|gb|EFQ67728.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 516] gi|311291969|gb|EFQ70525.1| N-6 DNA Methylase [Enterococcus faecalis TX0470] gi|315025988|gb|EFT37920.1| N-6 DNA Methylase [Enterococcus faecalis TX2137] gi|315028909|gb|EFT40841.1| N-6 DNA Methylase [Enterococcus faecalis TX4000] gi|315034538|gb|EFT46470.1| N-6 DNA Methylase [Enterococcus faecalis TX0027] gi|315147646|gb|EFT91662.1| N-6 DNA Methylase [Enterococcus faecalis TX4244] gi|315152628|gb|EFT96644.1| N-6 DNA Methylase [Enterococcus faecalis TX0031] gi|315157268|gb|EFU01285.1| N-6 DNA Methylase [Enterococcus faecalis TX0043] gi|315159897|gb|EFU03914.1| N-6 DNA Methylase [Enterococcus faecalis TX0312] gi|315161380|gb|EFU05397.1| N-6 DNA Methylase [Enterococcus faecalis TX0645] gi|315163676|gb|EFU07693.1| N-6 DNA Methylase [Enterococcus faecalis TX1302] gi|315167492|gb|EFU11509.1| N-6 DNA Methylase [Enterococcus faecalis TX1341] gi|315169392|gb|EFU13409.1| N-6 DNA Methylase [Enterococcus faecalis TX1342] gi|315574546|gb|EFU86737.1| N-6 DNA Methylase [Enterococcus faecalis TX0309B] gi|315581812|gb|EFU94003.1| N-6 DNA Methylase [Enterococcus faecalis TX0309A] gi|323481118|gb|ADX80557.1| N-6 DNA Methylase family protein [Enterococcus faecalis 62] gi|327535498|gb|AEA94332.1| adenine-specific methyltransferase [Enterococcus faecalis OG1RF] Length = 335 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|160944382|ref|ZP_02091610.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii M21/2] gi|158444164|gb|EDP21168.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii M21/2] Length = 2409 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 78/277 (28%), Gaps = 72/277 (25%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + S T V+ ++ + +P+ G G F Sbjct: 872 EYAAARSSTLNAHYTAPVVIRSIY--------DAVEKMGFQSGNILEPSMGVGNFFGMLP 923 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279 + + D +G EL+ T + A + + E+ RRD Sbjct: 924 DTMQD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 966 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + N PFG+ DK +K G S + F Sbjct: 967 ------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFFA 999 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + GG A V S +S R+ + E + + LP + F Sbjct: 1000 KAI-----DQVRPGGIIAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFR 1049 Query: 399 --FRTNIATYLWILSNRKTEERRG--KVQLINATDLW 431 T++ + + L R VQL D + Sbjct: 1050 ANAGTDVVSDIIFLQKRDRPADIEPAWVQLGKTEDGF 1086 >gi|58616366|ref|YP_195496.1| N6 adenine-specific DNA methyltransferase protein, N12 class [Azoarcus sp. EbN1] gi|56315828|emb|CAI10472.1| N6 adenine-specific DNA methyltransferase protein, N12 class [Aromatoleum aromaticum EbN1] Length = 946 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 38/144 (26%), Gaps = 32/144 (22%) Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-------- 239 +L K I + DP CG+G FL A+ + D + Sbjct: 353 AQVLFLGYLERLK-----IFRVLDPACGSGNFLYLALRALKDLEHRANLDAEALGLHRQL 407 Query: 240 ------LVPHGQELEPETHAVCVAG--------MLIRRLES--DPRRDLSKNIQQGSTLS 283 G E+ + ML + +P +I+ L Sbjct: 408 TIETSPDNVRGIEINAYAAELARVTVWIGEIQWMLKHGYDCRRNPILARLDHIENRDALL 467 Query: 284 K-DLFTGKR--FHYCLSNPPFGKK 304 D + + NPPF Sbjct: 468 NPDCTEAEWPVVDVIVGNPPFLGD 491 >gi|88856888|ref|ZP_01131540.1| hypothetical protein A20C1_03538 [marine actinobacterium PHSC20C1] gi|88813856|gb|EAR23726.1| hypothetical protein A20C1_03538 [marine actinobacterium PHSC20C1] Length = 570 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 22/198 (11%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 + T + VV+ L+ L +P+ G G FL A++ + Sbjct: 23 NNEKMRGAIFTKQTVVNFMLDLIGYDSADNL-----FDVKLLEPSFGGGRFLLGAVDRLL 77 Query: 229 DCGSHHKIPPILVP----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 + P + G EL+ E+ A + +E+ + ++ Sbjct: 78 ESWRRQSAPRVDQLLDAIRGVELDTESFVSFKARLGNHLVEAGLPDHEIARLLDAWLVNA 137 Query: 285 DLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHK--NGELGRFGPGLPKISDGSMLFL 339 + + F + + NPP+ ++ D + K + +GR +P F+ Sbjct: 138 NYLWAEFEFEFDFVIGNPPYVRQELIDPHQLVAYRKAFSTMVGRADLYVP--------FI 189 Query: 340 MHLANKLELPPNGGGRAA 357 + L + A Sbjct: 190 EKSLDHLNVGGKLSFICA 207 >gi|308185126|ref|YP_003929259.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180] gi|308061046|gb|ADO02942.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180] Length = 2834 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 62/364 (17%), Positives = 110/364 (30%), Gaps = 74/364 (20%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATA 189 +I FSG +E L F S + + TP L Sbjct: 920 EILAQFSGWGALESYFKKDQHPKEFEELKALLTKDEFRRAYSSTRDAYYTP----KLVID 975 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + D L + + +++P+ GTG F+ +H G EL+P Sbjct: 976 SIYQALDRLGFNNDNHPKEIFEPSLGTGKFI-----------AHAPSDKNYRFRGTELDP 1024 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + + + L N +T ++ + + + NPP+G K Sbjct: 1025 ISTNIS--------------QFLYPNQVIQNTALENHQFYQEYDAFVGNPPYG--NHKIY 1068 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 +KE N + + FL +L+ G A V+ S F Sbjct: 1069 SFYDKELSNESVHNY-------------FLGKAIKELKDD----GIGAFVV--SSWFMDA 1109 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 ++R + +N + LP +F T I+ +K E+ A Sbjct: 1110 KNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGVEKATNQSFTKAMP 1166 Query: 430 LWTSIRN----------EGKKRRIINDDQRRQILDI---YVSRENGKFSRML---DYRTF 473 + I N + + + +I++ + + K R D F Sbjct: 1167 YYDKIINSLDDETLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQEKLQRWYEKIDTANF 1226 Query: 474 GYRR 477 GYR Sbjct: 1227 GYRE 1230 >gi|218960674|ref|YP_001740449.1| putative Modification methylase TaqI (Adenine-specific methyltransferase TaqI) (M.TaqI) [Candidatus Cloacamonas acidaminovorans] gi|167729331|emb|CAO80242.1| putative Modification methylase TaqI (Adenine-specific methyltransferase TaqI) (M.TaqI) [Candidatus Cloacamonas acidaminovorans] Length = 471 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 69/231 (29%), Gaps = 33/231 (14%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 ++ + F TP +V L L+ + +P CG FL + Sbjct: 37 DIKRDSGMFFTPEWIVDLMVNLI-----DDTNYVEKEGIKILEPACGLAQFLLGIKRNKP 91 Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 S K G E+ E I S+ + ++ + L T Sbjct: 92 SLFSQAK------LFGVEINQE----------IINYLSNLNIANAIDLNRADYLL--WQT 133 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLE 347 F + NPP+G + ++ E + F+ N L+ Sbjct: 134 RSYFDLIIGNPPYGIPSLSEHYTIKTNPATKEKYKKLYATWFGKYNVYGAFIEKSINLLK 193 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 IV + + ++R +L +N E I+ L D+F Sbjct: 194 DNGQL---IFIVPPTFMIL-----DEFKKLRLFLAQNGKTE-IIYLGADIF 235 >gi|127511926|ref|YP_001093123.1| Eco57I restriction endonuclease [Shewanella loihica PV-4] gi|126637221|gb|ABO22864.1| Eco57I restriction endonuclease [Shewanella loihica PV-4] Length = 595 Score = 42.3 bits (98), Expect = 0.32, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 92/318 (28%), Gaps = 50/318 (15%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193 ++ F P ++ +IY ++ S + + TP +V + LL Sbjct: 91 GELIAQF------PVEDAGYLIGSIYTVML---PSSLRSSLGAYYTPPPLV---SRLLDL 138 Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---E 250 + A F G T DP CG G FL + L GQ L + Sbjct: 139 AEKAGFDFGKG---TAIDPACGGGAFLAPVAMRMIKRMPKASAEWTLKRIGQRLRGIEID 195 Query: 251 THAVCVAGMLIRRLESDPRRDLSKN-----IQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305 A +I P +K + G L ++ F + NPP+G+ Sbjct: 196 PFA-AWMSSVILEASILPLCVEAKRRLPNLVTVGDAL--NVSNMGTFDLVIGNPPYGRTT 252 Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSS 363 + R G ++ LF G A + +S Sbjct: 253 LSPE-------MRDTYSRSLYGH-----ANLYGLFTDLALR----LAADNGVVAYLTPTS 296 Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAI--VALPTDLFFRTNIATYLWILSNRKTEERRGK 421 L G +R L ++ I ++ +F T L K+ + Sbjct: 297 FL----GGQYFKSLRELLTAETTVKGIDFISDRNGVFDDVLQETLLTAYKKEKSNQSANI 352 Query: 422 VQLINATDLWTSIRNEGK 439 ++ + GK Sbjct: 353 SLIMPQGLNSAKVEKIGK 370 >gi|167527538|ref|XP_001748101.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773519|gb|EDQ87158.1| predicted protein [Monosiga brevicollis MX1] Length = 907 Score = 41.9 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 57/211 (27%), Gaps = 28/211 (13%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 L+R F + + ++ ++ YDP CGT L Sbjct: 638 DLMRAFDLKTRNMIGNTSMDPELAFFMANMVQA----------QPGTLAYDPFCGTASLL 687 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPET---HAVCVAGMLIRRLESDPRRDLSKNIQ 277 ++ G+ T ++ E D ++ Sbjct: 688 VPVAYFGGMTMGSDIAFQVVHGVGKTSRQGTGSKTRGPKEN-ILANYEQYELLDKFGDVL 746 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKI 331 + F +++PP+G + KD V +E + RF P+ Sbjct: 747 VADAANPSFRQDILFDMIVADPPYGIREPARRIGAKDSRPVPEEFR---DNRF----PRS 799 Query: 332 SDGSMLFL-MHLANKLELPPNGGGRAAIVLS 361 + + L + GGR A + Sbjct: 800 KQYGLGAVFTDLISFGAHRLVLGGRLAFWMP 830 >gi|313811491|gb|EFS49205.1| conserved domain protein [Propionibacterium acnes HL083PA1] Length = 852 Score = 41.9 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 28/230 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + R + + + TP + L+ + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTEEILHLSVCEPALGSGAFA 567 Query: 221 TD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + A ++ + + +L+ + + + ++ + Sbjct: 568 IEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFAE 625 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPKI 331 I TL D L P FG + + H ++ + P Sbjct: 626 I----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPPT 676 Query: 332 SDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 D----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 722 >gi|317177267|dbj|BAJ55056.1| Type II adenine specific methyltransferase [Helicobacter pylori F16] Length = 545 Score = 41.9 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSSYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q T +F +NPP+GKK+ +++ K+H N Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKENFKQHFN-------- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|218531262|ref|YP_002422078.1| type II restriction enzyme, methylase subunit [Methylobacterium chloromethanicum CM4] gi|218523565|gb|ACK84150.1| type II restriction enzyme, methylase subunit [Methylobacterium chloromethanicum CM4] Length = 929 Score = 41.9 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 36/168 (21%) Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPG----------- 204 +I+ +I+ E G+ T + L D ++ G Sbjct: 281 DIFGSMIQAVADEGERGSLGMHYTSVPNIMKVLGPLFLDDLRAQLDAAGDNVRKLRNLRK 340 Query: 205 --MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHA 253 ++DP CG+G FL A + + +G E++ Sbjct: 341 RLANIRVFDPACGSGNFLVIAYIRMREIEHEIVKLTDDEPRSVIPLSNFYGIEIKDFAAE 400 Query: 254 VCVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT 288 + +LI + D R + I+ G+ L +D + Sbjct: 401 IARLALLIAEFQCDVRFISQQVARSLVLPLKKTGQIKTGNALREDWWK 448 >gi|209883316|ref|YP_002287173.1| restriction methylase [Oligotropha carboxidovorans OM5] gi|209871512|gb|ACI91308.1| restriction methylase [Oligotropha carboxidovorans OM5] Length = 599 Score = 41.9 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 76/279 (27%), Gaps = 46/279 (16%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TP + L + + DP G G FL + + Sbjct: 128 GAFYTPPALTQRLLDLADEGGVD------WSTARVLDPASGGGAFLLEVAARMRLALEGS 181 Query: 235 K-----IPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + G EL+P ++ A + + L R ++ TL + Sbjct: 182 EPAFVLAQLGTRLSGLELDPHAASLSQAALEIFLSDLSMASGRTTPVFVKVCDTLEE--T 239 Query: 288 TGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 ++ + NPP+G + A G +G F Sbjct: 240 PVAQYDLVIGNPPYGRVTLSAAQRARYARSLYGHANLYGV-----------FTDVALRWT 288 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN------DLIEAIVALPTDLFFR 400 GG A + +S L G + +R+ L + D + A +F Sbjct: 289 RP----GGVIAYLTPTSVL----GGQYYTALRQLLADQAPPIAIDFVHA----RRGVFED 336 Query: 401 TNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEG 438 T L + K + + ++ +N Sbjct: 337 VLQETLLALYRKGGKRDRFQVHYLNVDNEREARLTKNGK 375 >gi|91773585|ref|YP_566277.1| putative RNA methylase [Methanococcoides burtonii DSM 6242] gi|91712600|gb|ABE52527.1| Nucleic acid binding protein [Methanococcoides burtonii DSM 6242] Length = 344 Score = 41.9 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 56/230 (24%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162 Y F+ + K D +F + L + +L + + + Y + Sbjct: 128 YRKGFNADLKD--PDVEFRAI---LSEKCVLGSVIASVDRSAY--EARAPHKKPFFYPGV 180 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 +R PR V + L + + ++DP CGT G L + Sbjct: 181 LR---------------PR-VARALVNMALIKEGDV----------VFDPFCGTAGILVE 214 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-AGMLIRRLESDPRRDLSKNIQQGST 281 A G E+ + + V A M +R +D + G Sbjct: 215 AG------------LVGATVLGLEVR---YKIAVGADMNLRHFNADQTMMM------GDA 253 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 + +++PP+G+ + +++ +++ F P Sbjct: 254 CKVP-LVDESVDAVIADPPYGRSARIEGESLHHLYEHSFAEMFRVLKPGK 302 >gi|281423758|ref|ZP_06254671.1| putative DNA methylase [Prevotella oris F0302] gi|281402160|gb|EFB32991.1| putative DNA methylase [Prevotella oris F0302] Length = 1556 Score = 41.9 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 80/257 (31%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ +L D + +P+ G G F+ + V Sbjct: 104 AFYTPKEITDTLADMLAD--------YSVRPARMLEPSAGVGVFV----DSVLRHSPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRL--ESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + + ++L T ++R L + R + I+ F Sbjct: 152 V----MAFEKDLLTGT--------ILRHLYPDHKMRTCGFEKIE--------KPFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + ++ GR + K G Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDTVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + V LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFRQANLVSAVRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SN--RKTEERRGKVQLI 425 K E + + + Sbjct: 295 QKHLNKKEMSQDERLMT 311 >gi|219851555|ref|YP_002465987.1| hypothetical protein Mpal_0910 [Methanosphaerula palustris E1-9c] gi|219545814|gb|ACL16264.1| hypothetical protein Mpal_0910 [Methanosphaerula palustris E1-9c] Length = 49 Score = 41.9 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 16/33 (48%) Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672 +FY+ R +I ++ +E + LL ++ Sbjct: 16 YFYKSTLLRTQDEICVNIQNLEKETEGLLNQIV 48 >gi|326445416|ref|ZP_08220150.1| hypothetical protein SclaA2_30317 [Streptomyces clavuligerus ATCC 27064] Length = 191 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVA 228 ++ TP D+ L + +L +P+ + P +PT GTGG + + Sbjct: 40 SRRSLGEYHTPPDISRLISEVLANPNRGSGDQPPHSPGEWALEPTAGTGGLFRTSAQVLR 99 Query: 229 DCGSH 233 G Sbjct: 100 RNGED 104 >gi|308182626|ref|YP_003926753.1| type II adenine specific methyltransferase [Helicobacter pylori PeCan4] gi|308064811|gb|ADO06703.1| type II adenine specific methyltransferase [Helicobacter pylori PeCan4] Length = 545 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LEMLENSSDLEKLGSHYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 T DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----TFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 R++ D NI Q LS +F +NPP+GKK+ +++ + K Sbjct: 177 RIKERYHLDC-PNIMQKDFLSLKHTP--QFDCIFTNPPWGKKYNQNQK---ENFKQKFN- 229 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -----LSQSLDSASLFFIASVNCLKENAHLG 255 >gi|288926365|ref|ZP_06420288.1| superfamily II DNA and RNA helicase [Prevotella buccae D17] gi|288336892|gb|EFC75255.1| superfamily II DNA and RNA helicase [Prevotella buccae D17] Length = 1096 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 40/242 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ + IR DP+ G G F A G + + Sbjct: 111 IVSAISDALASTNLQIRRCLDPSMGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + ++ + ++ ++ SN PFG D Sbjct: 166 LHPYGKGNIFVQNEPFEAIGEIED--------------KDKYDLITSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ LF T++ + L +L + +E + Q + Sbjct: 260 E----AIRRYLMQNSRLISALRLPSSLFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315 Query: 426 NA 427 Sbjct: 316 ET 317 >gi|188993950|ref|YP_001928202.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277] gi|188593630|dbj|BAG32605.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277] Length = 1828 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 50/269 (18%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 S + F TP VV A +E+ + + + DP+ G G F + + Sbjct: 95 MQSLKNSVMTAFYTPAPVVR--------EIAASLREAGIVPQRILDPSAGMGEF-IRSFD 145 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 +A G + GQ L + + R + I+ Sbjct: 146 GIAAEGHTTFGFEKDILTGQMLS-----------ALHPEDKIRIR-GFEEIES------- 186 Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345 G F SN PFG D K E R + ++S + F+ K Sbjct: 187 -KLGGYFDVVSSNIPFGDVAVFDPVFS----KTDEPAR---KVARMSLHNYFFI-----K 233 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTN 402 GG A + S + +R WL+ + + + V LP +LF T Sbjct: 234 GVDMLREGGVLAFITSQGVMNAPTNEP----VREWLMNHTRLISAVRLPNNLFSENAGTE 289 Query: 403 IATYLWILSN--RKTEERRGKVQLINATD 429 + + L +L KT + + I + Sbjct: 290 VGSDLIVLQKQSNKTSLTEEEKRFIKSEK 318 >gi|126668538|ref|ZP_01739493.1| helicase domain protein [Marinobacter sp. ELB17] gi|126627049|gb|EAZ97691.1| helicase domain protein [Marinobacter sp. ELB17] Length = 1658 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 57/445 (12%), Positives = 119/445 (26%), Gaps = 90/445 (20%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110 T + E + ++ + ++ +N ++ L +N I +D Sbjct: 781 TDDEIIEMLAQHLITKPVFDALFEGYNFTEHNPMSLAMQALTEQLKGHN----IDKEADT 836 Query: 111 AKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 ++ +E + + ++ ++ F T Sbjct: 837 LRSFYESVKMRAQGVESAEGKQRIIVELYDKFFKNAFPRMT------------------- 877 Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTD----- 222 + TP +VV + D + F S + D GTG F Sbjct: 878 ---DRLGIVYTPIEVVDFILHSVEDVMRSEFNSSLAEPNVHILDGFTGTGTFPVRLLQSG 934 Query: 223 -------AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK- 274 A + + ++ + +E H + + E + Sbjct: 935 IIPKDKLAHKYKHEIHANEIVLLAYYIAAINIEATYHGI--MNNNVAGDEYTDQIFEVPY 992 Query: 275 ----NIQQGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAV 312 I T S+D + NPP+ + DA Sbjct: 993 EPFTGICLTDTFQMYESEDMIDELLEENSSRRKHQKNLDIRVIVGNPPYSAGQTSENDAN 1052 Query: 313 EKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFN 367 + + R G S+ ++ L+ ++ G A V ++S L + Sbjct: 1053 QNVKYSNLDERIGSTYAHYSNATLQKNLYDSYIRAIRWASDRVGEQGVVAYVTNASFL-D 1111 Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSN 412 G + G +RR L+E + L + +F + + IL Sbjct: 1112 GNSMDG---LRRCLVEEFSSLYLFHLRGNQRTSGERSRKEGGKIFGSGSRAPIAISILVK 1168 Query: 413 RKTEERRGKVQLINATDLWTSIRNE 437 GK+ + D + + Sbjct: 1169 NPQSSEHGKIYFHDIGDYLSREKKL 1193 >gi|188996288|ref|YP_001930539.1| methyltransferase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931355|gb|ACD65985.1| methyltransferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 479 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 52/368 (14%), Positives = 100/368 (27%), Gaps = 48/368 (13%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 T DV + + D G G + + ++ + Sbjct: 21 RLFGQHFTSEDV---FNEFIFPEIKDKLYD-----YKFVDLFGGEGNLILPILKNIPEDK 72 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---FT 288 + + E A+ A P+ S+NI+ TL Sbjct: 73 RIEYFRKHIFLFDIQSEIVEKAIKKAE-----DYGIPKEIASENIKCLDTLKNYPEYLLN 127 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 Y ++NPP+ K +++ G L+ + L N L Sbjct: 128 DDLPVYHITNPPYLYIGYIKKHKETQKYLQYFQGDNKG-------YQDLYQIALINDLNH 180 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408 + V+ ++ +F+ SG ++IR + I V +F T I ++ Sbjct: 181 KIQ---KMIYVIPTNFIFSS---SGANKIRDMFFKVYRINKAVIFEKKIFENTGINVGIF 234 Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468 + V L S N K+ I+ + + + Sbjct: 235 FFERKDKISIHDVVF----EGLKISDTNIKKRTYILTPKNHYRAGNEFEDFVE------- 283 Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528 R + PL + F L + + + + + S K + Sbjct: 284 --------RHRAKNPLSVKFYLTHDEVQSNKGNKSIIVVDANDFSKIGYTKKEIKVNEQL 335 Query: 529 YGWAESFV 536 Y ES + Sbjct: 336 YNKIESNI 343 >gi|317481285|ref|ZP_07940356.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36] gi|316902618|gb|EFV24501.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36] Length = 1905 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 53/264 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ +L + +P+ G G F+ +++ K Sbjct: 104 AFYTPPEITDAIADVLHGHGI--------RPDRVLEPSAGVGAFVDAVLDY--------K 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ + ++ R+ D +Q + K F Sbjct: 148 PDADIMAFEK------------DLMTGRILKHLHPDQKVRVQGFEKIEKPF--TDYFDLV 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + E I + FL K GG Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSHDPARRSAAKTIHN--YFFL-----KSLDTVREGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L + IR +++++ + LP +LF T + + L IL Sbjct: 242 VAFITSQGVL----DAPSNAPIREYMMKHANPVGVARLPNNLFTDNAGTEVGSDLIILQK 297 Query: 413 RKTEERRGKVQLINATDLWTSIRN 436 ++R L + +++ Sbjct: 298 NSGKKRE----LYDYEEMFIQTGK 317 >gi|124514555|gb|EAY56068.1| putative modification methylase [Leptospirillum rubarum] Length = 575 Score = 41.9 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 29/206 (14%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 +F + E T R+VV L+ P L +P+ G G FL A+ Sbjct: 27 QFANAGIEARGAIFTRREVVEFILDLVGY-----TANRPLHKIRLLEPSFGGGDFLLSAI 81 Query: 225 NHVADCGSHHKIP----------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + P + H AV +D R +++ Sbjct: 82 ERLLKAWMEAGRPEPVKSLSDCIRAVELHHITFATTRAAVAKTLERAGIPSNDAERLVTE 141 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPGLPKI 331 + G L L F + NPP+ + E D++ E++ R +P Sbjct: 142 WLIYGDFLLVPL--EGLFDVVVGNPPY-VRQELIPDSLMTEYRARYATIYDRADLYVP-- 196 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAA 357 F+ + L + G A Sbjct: 197 ------FIERSLSSLTKSGHLGFICA 216 >gi|315042682|ref|XP_003170717.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma gypseum CBS 118893] gi|311344506|gb|EFR03709.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma gypseum CBS 118893] Length = 454 Score = 41.9 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 88/271 (32%), Gaps = 38/271 (14%) Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSG---IELHPDTVPDRVMSNIYEHLIRRFG 167 I E F F + ++ A + + + FS +P T + V++ +Y + R+ Sbjct: 117 EIIESFSFLAFDGPIKMVDADEEFCVFEEFSHQLAPSGNPKTHTEPVLNRVY---LGRWV 173 Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 +E + R + T + + YDP GTG FL A + Sbjct: 174 TEGGRTEINTYNLKKRKYISTTTMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 A G+E A + + ++ + + T + D Sbjct: 234 FGAITCGSD--IDGRSFRGKE------ATSKTD---TGVIGNFKQYGLLS-KYLDTFTSD 281 Query: 286 LFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF-- 338 L + F + +PP+G + + E + GEL F G+P + +F Sbjct: 282 LTNTPLRDIRMFDGIICDPPYGVREGLRVLGHKDESRKGELMMFQ-GVPSFKRENYIFPK 340 Query: 339 --------LMHLANKLELPPNGGGRAAIVLS 361 L + + GR ++ + Sbjct: 341 RPYPFNAMLDDILDFAAHTLVDNGRISLWMP 371 >gi|260912381|ref|ZP_05918929.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633504|gb|EEX51646.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 2081 Score = 41.9 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 102/361 (28%), Gaps = 43/361 (11%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ + IR DP+ G G F A G + + Sbjct: 111 IVSAISDALAFTNLQIRRCLDPSMGMGAF---AEIFARQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + +R + +L ++ SN PFG D Sbjct: 166 LHPYGKGNIFVRNEPFEAIGELE--------------NKDKYDLITSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYSRGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425 IRR+L++N + + + LP+ +F T++ + L IL + +E + Q + Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIILQKQTGKEISEGIEQQFV 315 Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYRRIKVLR 482 + + K + + I I R G + + Sbjct: 316 ETVSVPKEEGSSVVFKHNSLFVGDWKDISHRTIATERILGTDPYGRPAWEYRFTGGIEEL 375 Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542 + L R++ + + + K + + E K + Sbjct: 376 AESLRTQLSLEMGQRIDRKLYETGIPMTEVEREAEAEKLLRKLGITISREEDTEKTKTED 435 Query: 543 N 543 Sbjct: 436 K 436 >gi|116494532|ref|YP_806266.1| adenine-specific DNA methylase [Lactobacillus casei ATCC 334] gi|116104682|gb|ABJ69824.1| Adenine-specific DNA methylase [Lactobacillus casei ATCC 334] Length = 336 Score = 41.9 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 100/333 (30%), Gaps = 50/333 (15%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L ++ +E+ S N + E L + P+ Sbjct: 22 QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + ++ + +TP + LAT ++ +F + Sbjct: 75 -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D GTG L MN + + + +G + + AV +++L+ D Sbjct: 125 VADLAVGTGNLLFGVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 L LF +S+ P G V++ K E + Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVG------YYPVDERAKQFET----AAV 219 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S L + L+ G + S +F+ +G + WL ++ + Sbjct: 220 KGHSYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFSSEEAAGLTA---WLAKSTYFQ 271 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 ++ LP D F L +L + +R K Sbjct: 272 GLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304 >gi|289434862|ref|YP_003464734.1| N-6 DNA methylase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171106|emb|CBH27648.1| N-6 DNA methylase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 336 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 40/256 (15%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP + + LL ++ DP CGT LT +N + K Sbjct: 95 HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 143 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + G +++ ++ + + ++ + L+ L Sbjct: 144 DGVEIHASGVDVDDLLISLA-----LVGADLQRQKMT---LLHQDGLANLLVDPVDVVVS 195 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 F + D++A E E F LF+ + GG Sbjct: 196 DLPVGF---YPDDENAKSFELCREEGHSF---------AHFLFIEQGMRYTKP----GGY 239 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 ++ + + +++ +N IE I+ LP LF + IL Sbjct: 240 LFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILRKAAE 295 Query: 416 E-ERRGKVQLINATDL 430 + +V L N + L Sbjct: 296 NVKPPKEVLLANLSSL 311 >gi|229827047|ref|ZP_04453116.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC 49176] gi|229788665|gb|EEP24779.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC 49176] Length = 2218 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 59/248 (23%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ + + +P+ G G F+ + N + Sbjct: 563 FYTPKPVIDGMYKI--------LSGMGLRKGNVLEPSMGIGNFIGNLPNEMQGVK----- 609 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G E + + + NI Q + F+ F + Sbjct: 610 -----FYGVEQDSISGRIAK------------LLYPESNI-QIKGFEETTFSNNFFDASI 651 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG D+D + K GG Sbjct: 652 GNVPFGDFKLNDRDYDRNNFLIHDY--------------------FFAKSIDKVRNGGII 691 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +R+++ + LP + F T + + + R Sbjct: 692 AFIT-----SSGTMDKKDESVRKYIAARAEFLGAIRLPNNTFKGMAGTEVTSDIIFFKKR 746 Query: 414 KTEERRGK 421 + R + Sbjct: 747 DSVMERDE 754 >gi|308063317|gb|ADO05204.1| type II R-M system methyltransferase [Helicobacter pylori Sat464] Length = 545 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q T +F +NPP+GKK+ +++ + RF Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKEI-------FKQRFN- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|300933402|ref|ZP_07148658.1| superfamily II DNA/RNA helicase [Corynebacterium resistens DSM 45100] Length = 1147 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 53/182 (29%), Gaps = 18/182 (9%) Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + E D ++ LEK Y E++ + +V+ +YE ++ + +E Sbjct: 917 VLEKEDLNTETESLEK---FYDSV-RVRASEVNSASGKQQVIKELYERFFQKAFRKQAEA 972 Query: 174 AEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTD---------- 222 TP ++V D K + DP GT F Sbjct: 973 LGIVYTPVEIVDFILRAADDVSRKHFGKGLTDEGVCILDPFAGTSTFTVRLLQSGLIRPE 1032 Query: 223 --AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A + + + + + T+ A R E +P NI Sbjct: 1033 DLARKYANEILATEIMLLAYYVSAVNI-ETTYNALRAEEAKRNGEQEPEYVPFSNIALAD 1091 Query: 281 TL 282 T Sbjct: 1092 TF 1093 >gi|299141731|ref|ZP_07034867.1| helicase [Prevotella oris C735] gi|298577067|gb|EFI48937.1| helicase [Prevotella oris C735] Length = 689 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELEG--------------KDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|210062468|ref|YP_002300485.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|134270010|emb|CAL91883.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 242 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 32/239 (13%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111 VRE + + I F FY+ S Y + L + +D Sbjct: 22 DTVREFFNCVSYTMIMNSLFQLERRELFYSGSNIYGFNQL---AIQAGFIEKSIMLTDRH 78 Query: 112 KAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 K E+ F + ++ A L+ + ++ D +L + Sbjct: 79 KFSIEE-KFYNQFDTEIIDTANLISLEIQKQPLTDVFNRIFEDC-------YLTGK---- 126 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 E F+TP + + + D + + D GTG L + + Sbjct: 127 KGEWLGQFLTPNRLAEAISRFVGWEKD--------IKYNIGDCCAGTGSLLFPLLREIHS 178 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVA----GMLIRRLESDPRRDLSKN-IQQGSTLS 283 + + I + + E++P + +A M L+ N I + T+S Sbjct: 179 KEGYEGVQKIELLY-NEIDPLMAQLFMAQILTNMTYHNLDFKSLHVYIGNAITEYDTVS 236 >gi|319945759|ref|ZP_08020010.1| adenine-specific methyltransferase [Streptococcus australis ATCC 700641] gi|319748119|gb|EFW00362.1| adenine-specific methyltransferase [Streptococcus australis ATCC 700641] Length = 321 Score = 41.9 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 57/387 (14%), Positives = 112/387 (28%), Gaps = 77/387 (19%) Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123 +++ E K GY NT + + N + + Sbjct: 2 EESMNFEKIEKAYGYLLENTQT------IQNDLQTNFYDALVEQNA--------IYLDGQ 47 Query: 124 IA-RL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 L E L + N + E +++L+ + A TP Sbjct: 48 TELTLVKENNQRLKDL--NLNKEEWRRS----------FQYLLMKAAQTEPLQANHQFTP 95 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + L L+ S + + + GTG MN L Sbjct: 96 DGIGFLLVFLV-----DQLASSDQV--DVLEMGSGTGNLAQTLMN---------NCQRSL 139 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 G E++ + + N QG + K +S+ P Sbjct: 140 DYLGLEIDDLLIDLAAS--------MAEVMKADVNFAQGDAIRP--QVLKESDVIISDLP 189 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 G + R+ P+ + + + L+ GG AI L Sbjct: 190 VGYYP-----------DDAIASRYQVASPQGH--TYAHHLLIEQSLKYLKPGG--IAIFL 234 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 + + L +++W+ ++ + A+V LP +LF N+A +++L ++ E + Sbjct: 235 APNDLLTSEQSP---LLKKWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAEVQP 291 Query: 421 KVQ----LINATDLWTSIRNEGKKRRI 443 V L + D+ + + Sbjct: 292 FVYPLTDLQDQEDVMKFRESFQNWNKE 318 >gi|326402592|ref|YP_004282673.1| hypothetical protein ACMV_04440 [Acidiphilium multivorum AIU301] gi|325049453|dbj|BAJ79791.1| hypothetical protein ACMV_04440 [Acidiphilium multivorum AIU301] Length = 640 Score = 41.9 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 63/239 (26%), Gaps = 62/239 (25%) Query: 38 FTLLRRLECA-LEPT---RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93 F L+ LE L + + F G + AGY Y S + Sbjct: 92 FVALKMLEARQLVQECISKGDQSSGFKEFCGMAPGVALLPDAAGYRLYVESLFD------ 145 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 FS K +F+ D +S + K + + +L D Sbjct: 146 ------------EFSTEIKVLFDRRDAASVLW--PKRQTFEALLALLNAPDLSGVWDEDE 191 Query: 154 VMSNIYEHL-----IRRFGSEVSEGAE--------DFMTPRDVVHLAT------------ 188 + +Y+ ++ E F TPR VV Sbjct: 192 TIGWVYQFFNSGEERKKMRDESQAPRNSRELAVRNQFFTPRYVVQFLVDNTLGRLWLEMH 251 Query: 189 ----------ALLLDPDDALFKESPGMIRT---LYDPTCGTGGFLTDAMNHVADCGSHH 234 L+ D + P + DP CG+G FL + + + Sbjct: 252 GVQSRLTDLCEYLVRSADDTVQVRPKKDPRDLRILDPACGSGHFLLYSFDLLLAIYEEA 310 >gi|225017370|ref|ZP_03706562.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM 5476] gi|224949780|gb|EEG30989.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM 5476] Length = 2434 Score = 41.9 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 64/253 (25%), Gaps = 58/253 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + ++ + T D++ L F G R + DP GTG F + Sbjct: 887 EYKAAMNSTITAYYTEPDLIRHIYRAL-----ERFGFEGGPDRKILDPGMGTGNFYSVLP 941 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 G EL+ T + D +I Sbjct: 942 E----------QFQGSKLFGVELDSITGRIAK----------QLYPDADISIMG---YEA 978 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F F L N PF R+ P I D F+ Sbjct: 979 TKFEDNSFDVILGNIPFNSV-------------KIHDRRYNDLNPYIHD--YFFI----- 1018 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR-WLLENDLIEAIVALPTDLF---FR 400 K GG A + S + E RR + + LP F Sbjct: 1019 KSLDLAKPGGIIAFITSKGIMDRKDESLREYIARRAEFI------GAIRLPNTAFKPLAG 1072 Query: 401 TNIATYLWILSNR 413 T++ + L R Sbjct: 1073 TDVTADVVFLKKR 1085 >gi|262118142|ref|YP_003275912.1| hypothetical protein Gbro_4906 [Gordonia bronchialis DSM 43247] gi|262088052|gb|ACY24019.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247] Length = 941 Score = 41.9 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 54/216 (25%), Gaps = 45/216 (20%) Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---- 240 L + DP CG+G FL A + + + + Sbjct: 366 RLIANKSTSAAQLAAFQDELASNIYVDPACGSGNFLNVAYAKLREIETDIIVERRRRLGE 425 Query: 241 ----------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----------- 273 HG E+ + M + +++ + Sbjct: 426 TGMSLDATLEQKLTIDRFHGFEINWWPAKIAETAMFLVDHQANLNLAEAIGQAPERLPIT 485 Query: 274 --KNIQQGSTLSKDLFTGKRF----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 +I L D + NPPF + D E+ R G Sbjct: 486 ITAHITHADALDLDWKAQLPAVAGQTFVFGNPPFLGHATRTDDQAEQL-------RRAWG 538 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 IS + H L+L G A V ++S Sbjct: 539 TRDISRLDYVTAWHAKT-LDLLAQRPGAFAFVTTNS 573 >gi|315033300|gb|EFT45232.1| N-6 DNA Methylase [Enterococcus faecalis TX0017] Length = 335 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 52/341 (15%), Positives = 104/341 (30%), Gaps = 56/341 (16%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335 +D LS+ P G ++ + G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGYYPNDERGKGFAAAAEEGH-----------SYAH 225 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 L + ++ A L P E + WL +N ++ ++ LP Sbjct: 226 HLLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPD 277 Query: 396 DLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 +LF + + L + + E+ +V L L + Sbjct: 278 ELFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|301299759|ref|ZP_07206004.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852639|gb|EFK80278.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 644 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 46/196 (23%), Gaps = 48/196 (24%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPG------------MIRTLYDPT 213 + T + L D F+++ G DP Sbjct: 33 SEDKRSHLGMHYTSVPNIMKVINPLFLDDLHEEFEKAKGNETKLNNLLERMRKMKFMDPA 92 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELEPETHAVCVAGM 259 CG+G FL + +G E+E V + Sbjct: 93 CGSGNFLIITYKELRRLEMDIFEELGKINNSTMYVPTIDLGQFYGIEIEDFAVDVTRLSL 152 Query: 260 LIRRLESDPR--------------RDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPP 300 I + + +I+ G+ L D Y NPP Sbjct: 153 YIADHQMNLELKRRYGDYLRETLPLHKVGDIRCGNALRLDWNEILPHEKDDEVYLFGNPP 212 Query: 301 F--GKKWEKDKDAVEK 314 + GK K+ K Sbjct: 213 YKGGKSQPKEYKKYTK 228 >gi|257790626|ref|YP_003181232.1| SNF2-like protein [Eggerthella lenta DSM 2243] gi|257474523|gb|ACV54843.1| SNF2-related protein [Eggerthella lenta DSM 2243] Length = 2005 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 69/252 (27%), Gaps = 62/252 (24%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F S+ F TP V+ L +A + +P CGTG F+ A Sbjct: 76 EFASQRHTVLTAFYTPAPVIGAIYDAL---REAGIGRGDNP-AAILEPGCGTGNFMRLAP 131 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 L HG EL+P + + A + +++ Sbjct: 132 -----------ADLALDFHGVELDPISARIAQA-------LCPKAHITAAGLEECRV--- 170 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + F + N P+ + D + + Sbjct: 171 ---SPASFDAAIGNVPYSGDIKIDGMPIHD--------------------------YFIR 201 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 K GG A++ S L RR + E + V LP + F T Sbjct: 202 KSIESVRPGGIVAVLTSRYTLDKNSTA-----TRRAMAEKAELLGAVRLPAETFRRQAGT 256 Query: 402 NIATYLWILSNR 413 + + +L R Sbjct: 257 EALSDILLLRRR 268 >gi|302502553|ref|XP_003013247.1| hypothetical protein ARB_00432 [Arthroderma benhamiae CBS 112371] gi|291176810|gb|EFE32607.1| hypothetical protein ARB_00432 [Arthroderma benhamiae CBS 112371] Length = 421 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFG 167 I E F F + ++ A + + + F+ +P T + V+ IY + R+ Sbjct: 117 EIIESFSFLAFEGPIKMVDADEKFCVFEEFAHQLASSGNPKTHTEPVLKRIY---LGRWV 173 Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 +E + R + + + + YDP GTG FL A + Sbjct: 174 TEGGRAEINTYNLKKRKYISTTSMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 A ET + L S + T + D Sbjct: 234 FGAVTCGSDIDGRSFRGKEATSNTETGVIA--NFKQYGLLS----------RFLDTFTSD 281 Query: 286 LF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 L + + F + +PP+G + + + + GEL F G+P + +F Sbjct: 282 LTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMFQ-GVPSYKRENYIF 338 >gi|317475388|ref|ZP_07934652.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii 1_2_48FAA] gi|316908416|gb|EFV30106.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii 1_2_48FAA] Length = 1937 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ ++L T ++R L D + + + F Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + K+G GR + K GG Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296 Query: 413 --RKTEERRGKVQLI 425 K E + + + Sbjct: 297 KLNKKEMSQDERLMT 311 >gi|288925574|ref|ZP_06419506.1| DNA methylase [Prevotella buccae D17] gi|288337512|gb|EFC75866.1| DNA methylase [Prevotella buccae D17] Length = 1830 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 80/253 (31%), Gaps = 48/253 (18%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 S + F TP VV A +E+ + + + DP+ G G F + Sbjct: 93 SYMQSLKNSVMTAFYTPAPVVQ--------EIAASLREAGIVPKRILDPSAGMGEF-IRS 143 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +A + GQ L + + R + I+ Sbjct: 144 FDTIAAEEHTTFGFEKDILTGQMLS-----------ALHPEDKIRIR-GFEEIES----- 186 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 G F SN PFG D K E R + ++S + F+ Sbjct: 187 ---KLGGYFDVVSSNIPFGDVAVFDPVFS----KTDEPAR---KIARMSLHNYFFV---- 232 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A + S + +R WL+ + + + V LP +LF Sbjct: 233 -KGVDMLREGGVLAFITSQGVMNAPTNEP----VREWLMSHTRLISAVRLPNNLFSENAG 287 Query: 401 TNIATYLWILSNR 413 T + + L +L + Sbjct: 288 TEVGSDLIVLQKQ 300 >gi|257084816|ref|ZP_05579177.1| adenine-specific DNA methylase [Enterococcus faecalis Fly1] gi|256992846|gb|EEU80148.1| adenine-specific DNA methylase [Enterococcus faecalis Fly1] Length = 335 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 102/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTDKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|198454454|ref|XP_001359596.2| GA10534 [Drosophila pseudoobscura pseudoobscura] gi|198132801|gb|EAL28746.2| GA10534 [Drosophila pseudoobscura pseudoobscura] Length = 460 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 13/203 (6%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI+ + + + + L + + L ++DP GTG L Sbjct: 152 HLIKDLSLKKRKFIGNTSMDAQLSLLMANQAMVREGDL----------VFDPFVGTGSLL 201 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 202 VSAAKFGGYVLGADIDYMMVHAQCRPSRISQRVRERDESIRANLKQYGCADRYMDVLVAD 261 Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S F +++PP+G + +K +K K P S S+ L Sbjct: 262 -FSNPLWHPRLLFDSIITDPPYGIREATEKVETKKSAKEDTRSEDMVHYPSTSHYSLQSL 320 Query: 340 -MHLANKLELPPNGGGRAAIVLS 361 L GGR L Sbjct: 321 YCDLLEFSAKHLKLGGRLVCWLP 343 >gi|261416833|ref|YP_003250516.1| putative type II restriction enzyme (methylase subunit) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373289|gb|ACX76034.1| putative type II restriction enzyme (methylase subunit) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327703|gb|ADL26904.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 882 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 43/194 (22%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + ++++ +I E T + L D ++ G Sbjct: 274 KDINPDIFGSMFQTVID---EEQRGDLGQHYTSVPNIMKVIEPLFLNDLRKEFDAAGKSV 330 Query: 208 T-------------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQ 245 T ++DP CG+G FL A + + +G Sbjct: 331 TKLKNLLLRIRNIQIFDPACGSGNFLIIAYKELRKLEMDILLKMQEFGLTGIHLNHFYGI 390 Query: 246 ELEPETHAVCVAGMLI--RRLESDPRR-----------DLSKNIQQGSTLSKDL-----F 287 E++ + + ++ + + +I + + D Sbjct: 391 EIDDFACETAKLSLWLAEHQMNVEFFSKTGTICPTLPLKEAGHIVCDNACNIDWNNVCPN 450 Query: 288 TGKRFHYCLSNPPF 301 G Y L NPP+ Sbjct: 451 NGNDEIYVLGNPPY 464 >gi|225620239|ref|YP_002721496.1| hypothetical protein BHWA1_01313 [Brachyspira hyodysenteriae WA1] gi|225215058|gb|ACN83792.1| hypothetical protein BHWA1_01313 [Brachyspira hyodysenteriae WA1] Length = 428 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 66/180 (36%), Gaps = 19/180 (10%) Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K++F G F + NPP+ ++ E + F K +DG Sbjct: 22 KNIFKGGGFDVVIGNPPY------VRNRELDEKQKMYFNSFY----KSADGQYDLYQLFY 71 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTN 402 K + S+ S ++R ++L+N +I+ I+ + ++F + + Sbjct: 72 EKGINILKEKSILGYITSNKF----TIASYGKKLREYILDNCIIKQIIDVSMINVFKKVS 127 Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNE---GKKRRIINDDQRRQILDIYVSR 459 Y+ IL K E ++ ++N+ +++ ++D+ + IL Sbjct: 128 TYPYIIILEKNK-ENIDNIIKYKKVLTEEELLKNKLECIEQKSYLDDENKNFILRKIPDF 186 >gi|15611497|ref|NP_223148.1| type II DNA modification (methyltransferase [Helicobacter pylori J99] gi|4154967|gb|AAD06011.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter pylori J99] Length = 545 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + + TP +V L P D ++ Sbjct: 82 LEMLENSSDLENLGSYYE---KELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTTQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----IFCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAVALTKKRI--- 178 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 + R NI Q LS L +F +NPP+GKK+ +++ + K Sbjct: 179 ---KERYRLDCPNIMQKDFLS--LKHAPQFDCIFTNPPWGKKYNQNQK---ENFKQQFN- 229 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF M N L+ G Sbjct: 230 -----LHQSLDSASLFFMASLNCLKENAYLG 255 >gi|237718319|ref|ZP_04548800.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452503|gb|EEO58294.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 1056 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|237726538|ref|ZP_04557019.1| DNA methylase BmhA [Bacteroides sp. D4] gi|229435064|gb|EEO45141.1| DNA methylase BmhA [Bacteroides dorei 5_1_36/D4] Length = 1062 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|218261238|ref|ZP_03476114.1| hypothetical protein PRABACTJOHN_01778 [Parabacteroides johnsonii DSM 18315] gi|218224168|gb|EEC96818.1| hypothetical protein PRABACTJOHN_01778 [Parabacteroides johnsonii DSM 18315] Length = 852 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|197294796|ref|YP_001799337.1| Putative N6 adenine-specific DNA methyltransferase, probably truncated [Candidatus Phytoplasma australiense] gi|171854123|emb|CAM12112.1| Putative N6 adenine-specific DNA methyltransferase, probably truncated [Candidatus Phytoplasma australiense] Length = 209 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 76/256 (29%), Gaps = 62/256 (24%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP V +L ++DP G G Sbjct: 1 MYRVDRNNFFKNEKKSTIYTPSWVSQFLYDILSPQIKRGL---------IFDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E + + ++ + Sbjct: 52 LLPWKE------------KGFDVLGVDIEKTSF----SNLIHKNFLE------------- 82 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 LS+ ++ ++NPPF ++ + K GR P LP+ L+L Sbjct: 83 --LSQKDLKKQKISLVITNPPFNLDFK-----TKSYVKEKYGGR--PLLPE------LWL 127 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPTDL 397 + IVL + F S S+ + + + I +I++LP D+ Sbjct: 128 KKIIEIFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFVNQEYPEISSIISLPKDV 180 Query: 398 FFRTNIATYLWILSNR 413 F + + I + Sbjct: 181 FENVVFHSEILIFNVN 196 >gi|1536938|emb|CAA67873.1| methylase [Rhizobium leguminosarum] Length = 600 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 P +S Y ++ + ++ F TP + L + Sbjct: 104 PIESAAFQLSACYTAMLPQ---DIRSEWGAFYTPPALTARLMELAQEAGID------WRA 154 Query: 207 RTLYDPTCGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 + DP CG G FL + G +++P + + I Sbjct: 155 ARVLDPACGGGAFLLPVALRMQQALQALSPGELLDHFAGHLSGFDIDPFAAQLTQTWLEI 214 Query: 262 --RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 L R I+ ++L + + + KRF + NPP+G+ Sbjct: 215 AFASLSMQTGRPFPAVIRVCNSLEQPV-SSKRFDLVIGNPPYGR 257 >gi|329568743|gb|EGG50543.1| N-6 DNA Methylase [Enterococcus faecalis TX1467] Length = 335 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPVGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|242022009|ref|XP_002431434.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516722|gb|EEB18696.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 466 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 31/266 (11%), Positives = 77/266 (28%), Gaps = 36/266 (13%) Query: 111 AKAIFEDFDFSSTIA-----RLEKAGLLYKICKNFS-GIELHPDTVPDRVMS----NIYE 160 K + + + + +L + + + P+ + + Sbjct: 116 MKEKVDKIELFNYLPAQGPVKLNNPDVTLYYIEYYGLDPSNPPENPYNFYFGHWVCDGQR 175 Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 LI + + + + + + L + + DP G+G L Sbjct: 176 SLISDYSLKKRKFIGNTSMDPQLSLIMANQALIKSGDI----------VMDPFVGSGSLL 225 Query: 221 TDAMNH--------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 A + + H K P + + + E ++ ++ + Sbjct: 226 VAAAHFGAYVLGVDIDFLMLHGKSRPTRIQNRSKPRGEDESIY------HNMKQYGKDSQ 279 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 ++ G + + + +++PP+G + ++ K +K E G +P Sbjct: 280 YLDVIVGDSSLPFWHSRLQLDSIITDPPYGIREATERIGSTKNYKISEDHLQGH-IPSKI 338 Query: 333 DGSMLFL-MHLANKLELPPNGGGRAA 357 D S+ + L N GR Sbjct: 339 DYSLTDIYTDLLNFGAKHLKLNGRLV 364 >gi|317486505|ref|ZP_07945329.1| ankyrin and armadillo repeat-containing protein [Bilophila wadsworthia 3_1_6] gi|316922234|gb|EFV43496.1| ankyrin and armadillo repeat-containing protein [Bilophila wadsworthia 3_1_6] Length = 913 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 41/156 (26%) Query: 209 LYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILV----------------PHGQE 246 DP CG G FL + + + + +G E Sbjct: 356 FLDPACGCGNFLIVSYRELRELELQVLLAIKAETKGDTRFLALDIRPLIKVSISQFYGIE 415 Query: 247 LEPETHAVCVAGMLI--RRLESDPRR-----------DLSKNIQQGSTLSKDLFT---GK 290 LE V M + + + S I + L+ D + Sbjct: 416 LEEFPVEVARVSMWLMEHVMNLKVGKTFGQVISSIPLQHSATIVCANALTIDWKDVVVPE 475 Query: 291 RFHYCLSNPPFGKKWEKDK---DAVEKEHKNGELGR 323 + HY + NPPF D+ + + K + R Sbjct: 476 KLHYIMGNPPFSGYQYMDEQQKEYIANLFKKNKYSR 511 >gi|326407902|gb|ADZ64972.1| type II restriction-modification system modification subunit [Lactococcus lactis subsp. lactis CV56] Length = 230 Score = 41.5 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 34/163 (20%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LI+ E + + TP+ +V + + + + + T +P G G F Sbjct: 4 EKLIK--SKERVQQHGEVFTPQWMVKKMLDV-----EGIKQACENIDATFLEPAAGDGNF 56 Query: 220 LTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270 L + + H +G E + + + MLI L + Sbjct: 57 LVAILERKLKSVTDHFSSGHWKTKSLFALSSIYGIEFLADNLEIARSRMLIHYLNWYEKN 116 Query: 271 DLSK-----------------NIQQGSTLSKDLFTGKRFHYCL 296 + NI +G+TL+K Sbjct: 117 FQEQLHSSTDLYKSAMYIIRRNIVRGNTLTK-KHPDYDIPIIF 158 >gi|15611993|ref|NP_223645.1| hypothetical protein jhp0928 [Helicobacter pylori J99] gi|4155507|gb|AAD06506.1| putative [Helicobacter pylori J99] Length = 2231 Score = 41.5 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 118/402 (29%), Gaps = 76/402 (18%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TP L + D L + + +++P+ GTG F+ +H Sbjct: 524 AYYTP----KLVIDSIYQGLDQLGFNNDNHPKEIFEPSLGTGKFI-----------AHAP 568 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL+P + + L N +T ++ + + Sbjct: 569 SDKNYRFIGTELDPISANLSK--------------FLYPNQVIQNTALENYQFYQEYDAF 614 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPP+G + E +++ FL +L+ G Sbjct: 615 VGNPPYGNHKIYSSNDKELSNESIHNY---------------FLGKAIKELKDD----GI 655 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A V+ S F ++R + +N + LP +F T I+ +K Sbjct: 656 GAFVV--SSWFMDAKNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKG 710 Query: 416 EERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILDIYVS---RENG 462 E+ A + I N + + + +I++ + + Sbjct: 711 VEKATNQSFTKAMPYYDKILNSLDDDTLFALQNNRFDSFIPSDQLKIVNAVANHFGFKQE 770 Query: 463 KFSRML---DYRTFGY----RRIK---VLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512 K R D FGY +I + + + S L++ L L L Sbjct: 771 KLQRWYEKIDTANFGYSTQDYKIIKDFIDKVGKNSINLNEQTLNEYFIHHPENILGHLSL 830 Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 + +QIY Y + S K K K Sbjct: 831 EKTRYRFETNGEQIYKYDLQALEDESLDLSQALKQAIEKLPK 872 >gi|330824404|ref|YP_004387707.1| N-6 DNA methylase [Alicycliphilus denitrificans K601] gi|329309776|gb|AEB84191.1| N-6 DNA methylase [Alicycliphilus denitrificans K601] Length = 987 Score = 41.5 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 51/317 (16%) Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDA 197 S D +P ++S+IYE + E L +L+LD Sbjct: 266 QLSFFPYQFDVIPVELISSIYEQFAHAEPQTGGKRTEALRNGVHYTRLSVVSLVLDEVMD 325 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEP 249 ++ D TCG+G FL +A+ + S + P +G ++ Sbjct: 326 GLSGRE----SVLDLTCGSGVFLVEALRRLVHLRSQGQPPTRELIRSTLYGQVYGVDISE 381 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQ----GSTLS----------KDLFT------- 288 V + + LE DP ++++ G TL D Sbjct: 382 AAIRVAAFSLYLAALELDPDPQPPQSLKFQPLIGRTLLVGDARTVERDGDGKAVLATPTG 441 Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348 K+F + NPP+ + + +A K G+P G L + Sbjct: 442 LKQFDLIVGNPPWSFRGQTGTEARRKTR--------VAGVPAQPRGEGL---DFVLRAAE 490 Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL---FFRTNIAT 405 + R I+LS+ P F+ + + ++ +V L ++L F T Sbjct: 491 FSHEKTRFGIILSAMPFFSRSGTGMAAA--QHVMRAVAPITLVNL-SNLCSWLFATAAMP 547 Query: 406 YLWILSNRKTEERRGKV 422 + + + + ++R +V Sbjct: 548 AVVLFARHRPKQRTDQV 564 >gi|258648634|ref|ZP_05736103.1| putative DNA methylase [Prevotella tannerae ATCC 51259] gi|260851424|gb|EEX71293.1| putative DNA methylase [Prevotella tannerae ATCC 51259] Length = 1946 Score = 41.5 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ +L D + +P+ G G F+ + V Sbjct: 104 AFYTPKEITDTLADMLAD--------YSVRPARMLEPSAGVGVFV----DSVLRHSPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFTGKRFH 293 + + ++L T ++R L D + + I+ F Sbjct: 152 V----MAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIE--------KPFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + K+G GR + K G Sbjct: 192 LAVSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQADLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|325919124|ref|ZP_08181183.1| type I restriction-modification system methyltransferase subunit [Xanthomonas gardneri ATCC 19865] gi|325550433|gb|EGD21228.1| type I restriction-modification system methyltransferase subunit [Xanthomonas gardneri ATCC 19865] Length = 382 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 13/97 (13%) Query: 130 AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 G+LY++ K T + ++ + Y + ++ + +TPR + L Sbjct: 297 KGILYELIKRIHEKAAPLMTAEEGTDILGHFYGEFL-KYTGGDKKALGIVLTPRHITELF 355 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + T+ D GTGGFL AM Sbjct: 356 A----------LIANVNKKSTVLDICAGTGGFLVSAM 382 >gi|325853938|ref|ZP_08171454.1| hypothetical protein HMPREF9303_2022 [Prevotella denticola CRIS 18C-A] gi|325484275|gb|EGC87205.1| hypothetical protein HMPREF9303_2022 [Prevotella denticola CRIS 18C-A] Length = 1328 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 63/426 (14%), Positives = 120/426 (28%), Gaps = 89/426 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ + +L + A + +P+ G G F+ Sbjct: 104 AFYTPTEITETTSGVLKENGIAPL--------RMLEPSAGRGAFV--------------- 140 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + E A +L ++ S + I+ + K F G F Sbjct: 141 ----DAFLRDNPQAEVMAFEK-DLLTGKVLSHLYPEQQVRIEGFERIEKP-FEGY-FDVA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + + + G R KI + + K GG Sbjct: 194 VSNVPFG-----DVAVFDAQFEKGSAVR-RAAAKKIHN-------YFCLKTLDTVRDGGI 240 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A+++ L S +R +L + + V +P +LF T L +L Sbjct: 241 VALLVPQGVLN----ADSNSAVRHLMLSQADLLSAVRMPNNLFTENAGTEAGCDLLVLQK 296 Query: 413 R--KTEERRGKVQLI--------------------NATDLWTSIRN----EGKKRRIIND 446 R K E + L+ + R+ +++ Sbjct: 297 RVGKEELSEDEKLLVEPAEDNRDNIPANAYFLRYPDCIVHTEEKRSTDLYGKPAMVYLHE 356 Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFG--------YRRIKVLRPLRMSFILDKTGLARL 498 I + LD + +G +R + R + + + Sbjct: 357 GGVEGIARDLRGILSQDIQMRLDLQRYGQGVKPEEITQRASLQRTPVQNVLASPVQAQTV 416 Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI-----KSNEAKTLKVKAS 553 T K + P++ + + + K++ K +A+ K K Sbjct: 417 REKTTSVKTANQKSQEQASSPNPVLTLFDLWEFTVTEQKQATTGKKQKREKAEKTKTKPK 476 Query: 554 KSFIVA 559 A Sbjct: 477 AKEKTA 482 >gi|281425567|ref|ZP_06256480.1| putative DNA methylase [Prevotella oris F0302] gi|281400305|gb|EFB31136.1| putative DNA methylase [Prevotella oris F0302] Length = 1579 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 111/359 (30%), Gaps = 56/359 (15%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDAIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVDSDLIVLQKQSGKEIGEG 309 Query: 422 V--QLINATDLWTSI-RNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476 + Q + + + + + + + I I R+ G + + Sbjct: 310 IEQQFVQTASVPKGDGFSIAFNHNSLFEGEWKDISHRTIATDRQMGTDPYGKPAWEYTFD 369 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 + L R + + + P+ + W + M Q++ E Sbjct: 370 GGIEDMADSLRTQLSLEVEQRFDRKL-YETGIPMTREEWQVQVDKMEQKVQGGLKTEQT 427 >gi|320547430|ref|ZP_08041717.1| hypothetical protein HMPREF0819_1123 [Streptococcus equinus ATCC 9812] gi|320447907|gb|EFW88663.1| hypothetical protein HMPREF0819_1123 [Streptococcus equinus ATCC 9812] Length = 904 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 43/185 (23%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 ++ Y++L+ + + D T R+ + L D + DP Sbjct: 311 DDLTASYQNLVDKINENEDKDITD-KTRRENRNTFIRELDSLLDRISNIK------FLDP 363 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI------------------LVPHGQELEPETHAV 254 CG+G FL + +G EL+ H V Sbjct: 364 ACGSGNFLIITYKEIRRLEVKILKSLRELRQDRTIDFFETSKISLNQFYGIELDDFAHEV 423 Query: 255 CVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDL-----FTGKRFHYCL 296 + I + + + + NI QG+ L D Y + Sbjct: 424 ARLSLWIAEYQMNLEAENEINLKSAFLPLRDAGNITQGNALRLDWNEILPHQSDDEIYLI 483 Query: 297 SNPPF 301 NPP+ Sbjct: 484 GNPPY 488 >gi|282878612|ref|ZP_06287388.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281299283|gb|EFA91676.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 1588 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+L++N + + + LP+ +F T+I + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDIGSDLIVLQKQSGKE 305 >gi|257079363|ref|ZP_05573724.1| adenine-specific DNA methylase [Enterococcus faecalis JH1] gi|294780268|ref|ZP_06745637.1| N-6 DNA Methylase [Enterococcus faecalis PC1.1] gi|307268130|ref|ZP_07549517.1| N-6 DNA Methylase [Enterococcus faecalis TX4248] gi|256987393|gb|EEU74695.1| adenine-specific DNA methylase [Enterococcus faecalis JH1] gi|294452532|gb|EFG20965.1| N-6 DNA Methylase [Enterococcus faecalis PC1.1] gi|306515520|gb|EFM84048.1| N-6 DNA Methylase [Enterococcus faecalis TX4248] Length = 335 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%) Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S++ ++ +N + I +DF + E L + I+L P+ + + Sbjct: 27 SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81 Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + L+ + + A +TP + L L+ + + DP G G Sbjct: 82 QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L + ++ G + +G +++ AV NIQ Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178 Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 +D LS+ P G E G G S Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPVGY-------YPNDERAKGFAAAAEEGH---SYAHH 226 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + ++ A L P E + WL +N ++ ++ LP + Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278 Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435 LF + + L + + E+ +V L L + Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318 >gi|311031320|ref|ZP_07709410.1| N-6 DNA methylase [Bacillus sp. m3-13] Length = 331 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 91/279 (32%), Gaps = 47/279 (16%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP + L+ L + T+ DP GTG LT +NH + Sbjct: 94 HQMTPDAIAMFMGYLVGKYTSHLQQL------TMLDPAIGTGNLLTAVLNH--------Q 139 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 L G +++ + + ++ + ++ LS + Sbjct: 140 PNKKLEAFGVDVDDLLVKLAYNNANL--------QEQAISLFNQDGLSN--LFIEPVDVV 189 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +S+ P G + D +A + K E S LF+ + GG Sbjct: 190 VSDLPVGY-YPDDNNAANFKLKAEEGH---------SYAHYLFIEQGLRYTKP----GGH 235 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLWILSNRK 414 ++ +S E++ L++++ I+ ++ LP +F A + +L + Sbjct: 236 LLFLVPNSMF-----EEEEAKKVNALIKDEAYIQGMLQLPETMFQNKYHAKSILVLQKKG 290 Query: 415 -TEERRGKVQLINATDL--WTSIRNEGKKRRIINDDQRR 450 E + L+N ++ + +Q+ Sbjct: 291 IGIEPPKEALLVNLPSFSNMQAMEKIMTQINHWFSEQKN 329 >gi|158320371|ref|YP_001512878.1| putative restriction enzyme [Alkaliphilus oremlandii OhILAs] gi|158140570|gb|ABW18882.1| putative restriction enzyme [Alkaliphilus oremlandii OhILAs] Length = 1006 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 67/182 (36%), Gaps = 24/182 (13%) Query: 290 KRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + + ++NPP+ + K +E +K+ + LF + + + Sbjct: 399 QEYDVVITNPPYSGLRRLNCILKQFIEAHYKDYKYD--------------LFSVFMVKNM 444 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G A + + F S +R+++L++ + +++ L + F ++A Sbjct: 445 R-YTRNNGIAGFMTPNVWQF----ISSYENLRKYILDHYQLVSLIQLGDEGFKDASVAIS 499 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466 +++ K + + + + ++ + K R + +Q ++ + K + Sbjct: 500 TFVIKKCKADSKT--IFIKLNSEDSKDTKTVQNKIRNFDKEQYAVDQRMFHNITGNKLAF 557 Query: 467 ML 468 + Sbjct: 558 WI 559 >gi|320007859|gb|ADW02709.1| hypothetical protein Sfla_1259 [Streptomyces flavogriseus ATCC 33331] Length = 388 Score = 41.5 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 69/219 (31%), Gaps = 47/219 (21%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + F S +F +PR V +AL+ T+ DP CGTG FL Sbjct: 189 LTEFASRGRHR--EFSSPRVVASAVSALVEKHLAG----------TVLDPFCGTGSFLWA 236 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 A++H A+ G + G E + + + + D R + I++G + Sbjct: 237 ALDHAAEQGVAAE------FIGYEFDAQLAELAE------GIGRDAPRHVV--IEKGDSF 282 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 ++ PP G ++ S+G + L Sbjct: 283 ---QRGLADADVVVTAPPVGLSLADRHLLLDGS--------------TTSEGYVAALDKC 325 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 L+ GGRA + S G + R L Sbjct: 326 VRALKP----GGRAVLQYRSLVHLRGPVRGVQDVPGREL 360 >gi|260663422|ref|ZP_05864313.1| adenine-specific DNA methylase [Lactobacillus fermentum 28-3-CHN] gi|260552274|gb|EEX25326.1| adenine-specific DNA methylase [Lactobacillus fermentum 28-3-CHN] Length = 289 Score = 41.5 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%) Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 + A K+ K + I+L + + + + + + A MTP + L Sbjct: 1 MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58 Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 +L+ + DP GT LT MNH+ + +G + Sbjct: 59 MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107 Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306 + +V + +DL + + + +++ P G Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDRVVADLPVGY--- 154 Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 ++ R G S + + + + GG + L LF Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLLPGGF--GVFLVPKALF 202 Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424 + +G + W+ ++ ++ LP +LF + +A L +L + T + GKV L Sbjct: 203 QSKETAG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258 >gi|121582865|ref|YP_973307.1| hypothetical protein Pnap_4283 [Polaromonas naphthalenivorans CJ2] gi|120596127|gb|ABM39565.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 1233 Score = 41.5 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 22/157 (14%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 + + R + ++Y+ L + TP V L P +E Sbjct: 174 HDFTDASWNTRFLGDLYQDL----SEATRKRYALLQTPEFVEEFILDRTLTP---AIREF 226 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPILVPHGQELEPETHA 253 + DPTCG+G FL + A + G +L P A Sbjct: 227 GYREVRMIDPTCGSGHFLLGGFQRMVGEWSRAAPAHNRRDVAQKALDAVAGVDLNPFAVA 286 Query: 254 VCVAGMLIRRLESDPRRDLSK------NIQQGSTLSK 284 + +L+ L++ LS ++ G +L Sbjct: 287 ISRFRLLLAALQASDVHRLSDAPDFTIHVAIGDSLLH 323 >gi|325855560|ref|ZP_08171871.1| helicase C-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|325483774|gb|EGC86734.1| helicase C-terminal domain protein [Prevotella denticola CRIS 18C-A] Length = 2072 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIAEALSAADVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+LL+N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLLQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|282859989|ref|ZP_06269073.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|282587195|gb|EFB92416.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] Length = 2072 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIAEALSAADVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+LL+N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLLQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|224436461|ref|ZP_03657475.1| hypothetical protein HcinC1_00880 [Helicobacter cinaedi CCUG 18818] gi|313142972|ref|ZP_07805165.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128003|gb|EFR45620.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 1111 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 61/237 (25%), Gaps = 65/237 (27%) Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDRV----- 154 Y+ FS F+ + ++ I L L ++ + D + Sbjct: 287 YLNGGLFSPQDNDFFDLQNPNAHINSLHISNDLFSELFATLNRYHFTIDEADESAVEVAL 346 Query: 155 ----MSNIYEHLIRRFGSEVS----------EGAEDFMTPRDVVHLATAL-LLDPDDALF 199 + I+E L+ + ++ + + TPR++V +L Sbjct: 347 DPELLGQIFESLLSQLFTDNKLEKLDKNSLRKATGSYYTPREIVRYMVRSAILLHLQTKL 406 Query: 200 KE--------------------------------SPGMIRTLYDPTCGTGGFLTDAMNHV 227 K + DP CG+G F +N + Sbjct: 407 KGKVDSQFLESLVFDSSLRGSEATEAIHTQKTILQELATLKILDPACGSGAFPMGILNEI 466 Query: 228 ADCGSHHKIPP----------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 S +G +++P + + + + D+ Sbjct: 467 IRIQSDLDDTRPLYTRKLEILQECIYGIDIQPMATEIARLRCFLSLIIDENPSDIKP 523 >gi|222101999|ref|YP_002546589.1| hypothetical protein Arad_12049 [Agrobacterium radiobacter K84] gi|221728116|gb|ACM31125.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 951 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 64/209 (30%), Gaps = 38/209 (18%) Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-------------EPETHA 253 + DP CG+G FL A+ + D + + G++ P Sbjct: 357 FRVLDPACGSGNFLYLALLGLKDLEHRVNLEAEAMGFGRQFPTVGPQGVGGIELNPYAAE 416 Query: 254 VCVAGMLIR----------RLESDPRRDLSKNIQQGSTLSK-DLFTG--KRFHYCLSNPP 300 + + I +E P NIQ L D H + NPP Sbjct: 417 LARVTVWIGEIQWMRKNGFDVERKPILRPLDNIQCRDALLNKDGTEAVWPEAHVTIGNPP 476 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAI 358 F +K + + + F +P +D F+M+ K RA Sbjct: 477 FIGD-KKMISLLGEPYVEQLRRTFAGRVPGSAD----FVMYWFEKARARILAKAQERAGF 531 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLI 387 V + S S+I + ++E I Sbjct: 532 VATQSI-----RRGASSDILKRIVETGSI 555 >gi|195394858|ref|XP_002056056.1| GJ10432 [Drosophila virilis] gi|194142765|gb|EDW59168.1| GJ10432 [Drosophila virilis] Length = 491 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 57/207 (27%), Gaps = 21/207 (10%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI++ + + + + L + D L ++DP GTG L Sbjct: 180 HLIKQLSLKQRKFIGNTSMDAQLSLLMANQAMVRDGDL----------VFDPFVGTGSLL 229 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 230 VSAAKFGGYVLGADIDFMMVHARCRPSRITQKVRDKDESIRANLQQYGCADRYMDVLVAD 289 Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-- 337 S F +++PP+G + +K + K P S S+ Sbjct: 290 -FSNPLWHRRITFDSIITDPPYGIREATEKVENKFNPKENTRTAAMAHYPSTSHYSLQHL 348 Query: 338 ---FLMHLANKLELPPNGGGRAAIVLS 361 L A L+ GGR L Sbjct: 349 YADLLQFGATHLK----LGGRLVCWLP 371 >gi|38491999|gb|AAM03043.3| hypothetical protein [Helicobacter pylori] Length = 2879 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 91/308 (29%), Gaps = 58/308 (18%) Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATA 189 +I FSG +E L F S + + TP L Sbjct: 965 EILAQFSGWGGLESYFKKDQRPKEFEELKALLTKDEFRRAYSSTRDAYYTP----KLVID 1020 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 + D L + +++P+ GTG F+ +H G EL+P Sbjct: 1021 SIYQALDRLGFNQNNHPKEIFEPSLGTGKFI-----------AHAPSDKNYRFVGTELDP 1069 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + ++ + L N +T ++ + + + NPP+G Sbjct: 1070 --------------ISANISQFLYPNQVIQNTALENHPFHQDYDAFVGNPPYGNHKIYSS 1115 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + E +++ FL +L+ G A V+ S F Sbjct: 1116 NDAELSNESVHNY---------------FLGKAIKELKDD----GIGAFVV--SSWFMDA 1154 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 ++R + +N + LP +F T I+ +K + A Sbjct: 1155 KNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGVDEATNQSFTKAMP 1211 Query: 430 LWTSIRNE 437 + I N Sbjct: 1212 YYDKILNS 1219 >gi|299144309|ref|ZP_07037389.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518794|gb|EFI42533.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 2878 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 59/248 (23%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ + + +P+ G G F+ + + + Sbjct: 1148 FYTPKTVIDSIYS--------TLSGMEFKNGNILEPSMGIGNFIGNLPDEMKKSK----- 1194 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G EL+ + + + I+ L + F+ F + Sbjct: 1195 -----FYGVELDSVSGRIGKL----------LYPESDIQIKG---LEETSFSNNFFDVVI 1236 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D++ + + K GG Sbjct: 1237 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1276 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +RR+L + LP D F T + + + L R Sbjct: 1277 AFIT-----SSGTMDKKDESVRRYLAARAGFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1331 Query: 414 KTEERRGK 421 + R + Sbjct: 1332 DSIRERDE 1339 >gi|227535801|ref|ZP_03965850.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300] gi|227244289|gb|EEI94304.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300] Length = 1811 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 77/259 (29%), Gaps = 55/259 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ ++ ++S I +P+ G G F+ Sbjct: 104 AFYTPPQIIDAVSS--------ALRDSGLKIDKFLEPSAGIGSFIQSFSE---------N 146 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + + ++ L+ + + NI+ + Sbjct: 147 QQVKVTAYEKD-------------LLTG-KILKQLYPESNIRISGFEEIPEKEQNSYDVV 192 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 SN PFG D + P + + K GG Sbjct: 193 ASNIPFGDTSVFDLSYSRSRN------------PAKEQAARSIHNYFFLKGNDMLREGGL 240 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 + S L + + IRR L++++ + + V LP +LF T + + L IL Sbjct: 241 QVFITSQGILNSPKNEP----IRRALMQDNNLVSAVRLPNNLFTDYAGTEVGSDLIILQK 296 Query: 413 RKTEERRGKVQLINATDLW 431 ++ L + +L+ Sbjct: 297 NTAKQG-----LTDTEELF 310 >gi|325953795|ref|YP_004237455.1| hypothetical protein Weevi_0153 [Weeksella virosa DSM 16922] gi|323436413|gb|ADX66877.1| hypothetical protein Weevi_0153 [Weeksella virosa DSM 16922] Length = 911 Score = 41.5 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 94/341 (27%), Gaps = 70/341 (20%) Query: 39 TLLRRL------ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 L RL + + +E +N D F + + L Sbjct: 183 VFLVRLLFCLFADDTGIFEKDTFKEFIE--VKTNEDGSDLGAWLAQYFQVLNTPTDKRLK 240 Query: 93 STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 NL+ ++A+F F + + +I S ++ + Sbjct: 241 ------NLDEHLAAF-PYVNGKL----FEEPLPIASFNSRMREILLECSSLDWG--KISP 287 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFK----------- 200 + ++++ ++ E T ++++ L L LD A FK Sbjct: 288 AIFGSMFQSVM---NPEERRNLGAHYTSEKNILKLIKPLFLDELQAEFKKVKSNKNKLKE 344 Query: 201 -ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------------SHHKIPPILVPH 243 DP CG G FL + + + + Sbjct: 345 FHQKLGSLKFLDPACGCGNFLIITYRELRLLELEILKELYGGQQVIGIDQIMLVDVDQFY 404 Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKN-------------IQQGS---TLSKDLF 287 G E + + + + + + R + I G+ T+ D+ Sbjct: 405 GIEYDEFPARIAEVALWLMDHQMNLRISEAFGMYYARLPLKKSATIVHGNALRTIWTDIV 464 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 Y L NPPF K + K+ E G G G+ Sbjct: 465 PKSELSYILGNPPFYGKQYQSKEQKEDMA-LVFNGVKGAGV 504 >gi|77163972|ref|YP_342497.1| hypothetical protein Noc_0443 [Nitrosococcus oceani ATCC 19707] gi|76882286|gb|ABA56967.1| hypothetical protein Noc_0443 [Nitrosococcus oceani ATCC 19707] Length = 46 Score = 41.5 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%) Query: 1 MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKV 34 M++ + L +W A+DL DF Sbjct: 1 MSKD--QLSQLGKTLWAIADDLREAMNADDFRDY 32 >gi|313637996|gb|EFS03287.1| N-6 DNA methylase [Listeria seeligeri FSL S4-171] Length = 336 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 40/256 (15%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP + + LL ++ DP CGT LT +N + K Sbjct: 95 HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 143 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + G +++ ++ + + ++ + L+ L Sbjct: 144 DGLEIHASGVDVDDLLISLA-----LVGADLQRQKMT---LLHQDGLANLLVDPVDVVVS 195 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 F + D++A E E F LF+ + GG Sbjct: 196 DLPVGF---YPDDENAKSFELCREEGHSF---------AHFLFIEQGMRYTKP----GGY 239 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 ++ + + +++ +N IE I+ LP LF + IL Sbjct: 240 LFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILRKAAE 295 Query: 416 E-ERRGKVQLINATDL 430 + +V L N + L Sbjct: 296 NVKPPKEVLLANLSSL 311 >gi|227892118|ref|ZP_04009923.1| DNA methylase [Lactobacillus salivarius ATCC 11741] gi|227866050|gb|EEJ73471.1| DNA methylase [Lactobacillus salivarius ATCC 11741] Length = 711 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 47/196 (23%), Gaps = 48/196 (24%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPG------------MIRTLYDPT 213 + T + L D F+++ G DP Sbjct: 100 SEDKRSHLGMHYTSVPNIMKVINPLFLDDLHEEFEKAKGNETKLNNLLERMRKMKFMDPA 159 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELEPETHAVCVAGM 259 CG+G FL + +G E+E V + Sbjct: 160 CGSGNFLIITYKELRRLEMDIFEELGKLNNSTMYVPTIDLGQFYGIEIEDFAVDVTRLSL 219 Query: 260 LIRRLESDPR--------------RDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPP 300 I + + +I+ G+ L D + Y NPP Sbjct: 220 YIADHQMNLELKRRYGDVLRETLPLHKVGDIRCGNALRLDWNEILPHEKEDEIYLFGNPP 279 Query: 301 F--GKKWEKDKDAVEK 314 + GK K+ + Sbjct: 280 YKGGKSQPKEYKKYTE 295 >gi|225868543|ref|YP_002744491.1| type II restriction enzyme and methylase [Streptococcus equi subsp. zooepidemicus] gi|225701819|emb|CAW99254.1| type II restriction enzyme and methylase [Streptococcus equi subsp. zooepidemicus] Length = 540 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 35/250 (14%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 + + + TP+ + + + +P+ G G F+ A Sbjct: 5 QDSKKNRGGYYTPQKLTDFIAKWAIS----------TPSDKVLEPSAGDGRFVDSAYKVF 54 Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + IL E+ A+ + + + SD + + +Q Sbjct: 55 QNFDVAFNTDQILAI----EYNESEALKIDNNKAKVINSDFFKFFQEKLQN--------- 101 Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347 + F+ L NPPF + DK+ K + G ++ Sbjct: 102 -KETFNVILGNPPFIRYQSIDKEISAKAFDSMIY----YGFNPNKMTNL--WAPFLLLSA 154 Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407 GR +++ + L A +EIR +LL+ +++ +LF + Sbjct: 155 ELLTADGRLGMIIPAELLQVDYA----AEIRAYLLQKFSELTLISFNDNLFEGAQQEIVV 210 Query: 408 WILSNRKTEE 417 L K++ Sbjct: 211 L-LGKIKSKN 219 >gi|297718581|gb|ADI50196.1| putative methylase/helicase [Rhodococcus equi] Length = 2934 Score = 41.5 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191 + + F D L+ F T +V + Sbjct: 1043 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVSELWRAV 1100 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 + L +P CG G F+ A P + G E+EP + Sbjct: 1101 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1140 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + S+ I+ + T F + N PF Sbjct: 1141 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1177 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 GR+ P P + + K GG A+V S F A Sbjct: 1178 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1224 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 G+ R + + V LPT F T + T + + R+ + + + Sbjct: 1225 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1275 >gi|77164957|ref|YP_343482.1| hypothetical protein Noc_1465 [Nitrosococcus oceani ATCC 19707] gi|254434597|ref|ZP_05048105.1| hypothetical protein NOC27_1528 [Nitrosococcus oceani AFC27] gi|76883271|gb|ABA57952.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090930|gb|EDZ68201.1| hypothetical protein NOC27_1528 [Nitrosococcus oceani AFC27] Length = 914 Score = 41.5 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 53/217 (24%), Gaps = 53/217 (24%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207 + + ++++ +I E T + L E Sbjct: 278 SAINPDIFGSMFQAVID---EEQRGNLGQHYTSVSNIMKVIQPLFLDKLYAELEKSRKRD 334 Query: 208 T-------------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------- 239 ++DP CG+G FL A + Sbjct: 335 RKLKELLIRLQNLRVFDPACGSGNFLIIAYKELRKLEMEVIDALNAISDQAEMYYSGIRL 394 Query: 240 LVPHGQELEPETHAVCV---------AGMLIRR----LESDPRRDLSKNIQQGSTLSKDL 286 +G E++ H V M + E+ S +I G+ L D Sbjct: 395 SQFYGIEIDDFAHEVATLSLWLAEHQMNMAFKAKFGYAEAALPLRDSGDIVCGNALRLDW 454 Query: 287 FT---------GKRFHYCLSNPPFGKKWEKDKDAVEK 314 R Y NPPF E+ K+ Sbjct: 455 EEVCPPADGSGNPREIYICGNPPFLGTTERSKEQSAD 491 >gi|317179152|dbj|BAJ56940.1| Type II adenine specific methyltransferase [Helicobacter pylori F30] Length = 545 Score = 41.5 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSSYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q T +F +NPP+GKK+ +++ K RF Sbjct: 181 RYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQ-------KENFKQRFN- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|195153234|ref|XP_002017534.1| GL21470 [Drosophila persimilis] gi|194112591|gb|EDW34634.1| GL21470 [Drosophila persimilis] Length = 486 Score = 41.5 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 13/203 (6%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI+ + + + + L + + L ++DP GTG L Sbjct: 178 HLIKDLSLKKRKFIGNTSMDAQLSLLMANQAMVREGDL----------VFDPFVGTGSLL 227 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 228 VSAAKFGGYVLGADIDYMMVHAQCRPSRISQRVRERDESIRANLKQYGCADRYMDVLVAD 287 Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S F +++PP+G + +K +K K P S S+ L Sbjct: 288 -FSNPLWHPRLLFDSIITDPPYGIREATEKVETKKSAKEDTRSEDMVHYPSTSHYSLQSL 346 Query: 340 -MHLANKLELPPNGGGRAAIVLS 361 L GGR L Sbjct: 347 YCDLLEFSAKHLKLGGRLVCWLP 369 >gi|78189569|ref|YP_379907.1| hypothetical protein Cag_1609 [Chlorobium chlorochromatii CaD3] gi|78171768|gb|ABB28864.1| hypothetical protein Cag_1609 [Chlorobium chlorochromatii CaD3] Length = 521 Score = 41.5 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 67/264 (25%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 F TP V A + + ++DP G G + Sbjct: 21 RDKGQFWTPSWVAEAMVAYVTEN-----------TDLVFDPATGRG----AFYEGLLKLN 65 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G +++P+ ++ + +N KD ++ Sbjct: 66 K-----QNISFLGTDIDPD---------VLSDEIYNKENCFVEN----RDFIKDP-PNRK 106 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHK-------NGELGRFGPGLPKISDGSMLFLMHLAN 344 F ++NPP+ + D+ K N GR G + FL+ N Sbjct: 107 FKAIVANPPYIRHHRIDEATKILLKKIAISITGNSIDGRAGYHI--------YFLIQALN 158 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----ENDLIEAIVALPTDL--F 398 LE G+ A ++ A + E + + L E IE +V F Sbjct: 159 LLEKD----GKLAFIMP--------ADTCEGKFAKNLWEWISEKFCIECVVTFDERATPF 206 Query: 399 FRTNIATYLWILSNRKTEERRGKV 422 + ++++ N K ++ + Sbjct: 207 PNVDTNAIIFLIKNTKPQQTLQWI 230 >gi|300956331|ref|ZP_07168629.1| conserved domain protein [Escherichia coli MS 175-1] gi|300316843|gb|EFJ66627.1| conserved domain protein [Escherichia coli MS 175-1] Length = 109 Score = 41.5 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 12/108 (11%), Positives = 39/108 (36%), Gaps = 5/108 (4%) Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR 476 KV I+A+ + GK + ++++ +I+ Y + +N + ++ + + Sbjct: 1 MDDKVLFIDASREF----KAGKNQNQLSEENIEKIVKTYRNGDNVEKYAYLASLKEIQDN 56 Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524 + P + ++ + L +L ++ + + Sbjct: 57 DYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAELAKLETEMAGYLKE 104 >gi|54023589|ref|YP_117831.1| putative DNA metyltransferase [Nocardia farcinica IFM 10152] gi|54015097|dbj|BAD56467.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152] Length = 558 Score = 41.5 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 17/131 (12%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + TP ++ +L + + DP CG G L + Sbjct: 12 KRHGRHYTPPELARFLARRVLAH----LPPASAAGWRVLDPACGEGELLLA----LHGEA 63 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGK 290 + + + G +L+ A A + +D G LS+ Sbjct: 64 ARVRPGVPIRMTGYDLDESALARARARAAAAGMVADWHT--------GDFLSEAARLGPG 115 Query: 291 RFHYCLSNPPF 301 RF ++NPP+ Sbjct: 116 RFDAIITNPPY 126 >gi|307688883|ref|ZP_07631329.1| helicase domain protein [Clostridium cellulovorans 743B] Length = 1021 Score = 41.5 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 51/227 (22%) Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 L+++ + + +P G G F + N + +G EL+ Sbjct: 573 LIIENIYKALENFGFKEGNILEPAMGVGNFFSMIPNTM----------NKSKLYGVELDD 622 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + + + NI+ + F + N PFG ++ Sbjct: 623 ISGRIAK------------QLYQKANIKIQ-GFETTDYPDNFFDVAIGNVPFG-DYKLYD 668 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 +K + FG L GG A + S L Sbjct: 669 PTYDKHNFMIHDYFFGKAL-------------------DKVRPGGIIAFITSKGTLDKEN 709 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 +R+++ + + + LP F T + + L R Sbjct: 710 PS-----VRKYIAQRADLVGAIRLPNTAFKANANTEVTADILFLQKR 751 >gi|197301353|ref|ZP_03166434.1| hypothetical protein RUMLAC_00080 [Ruminococcus lactaris ATCC 29176] gi|197299510|gb|EDY34029.1| hypothetical protein RUMLAC_00080 [Ruminococcus lactaris ATCC 29176] Length = 306 Score = 41.5 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 30/215 (13%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 ++ F + + D + PR + L + + D G+G L Sbjct: 88 VQEFMGLEFQVSGDVLIPRQDTEVLVEEALKLLEQEKVPKEKETVRMLDLCTGSGCILIS 147 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 + + K + G ++ + + + + L Sbjct: 148 ILYYA------AKEKIQIQGTGADISEAALRIAEENLDLLEKNGNKGMAEL--------L 193 Query: 283 SKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340 DLF F +SNPP+ K E + L DG + F Sbjct: 194 ESDLFEQVDGTFGMIVSNPPYIKTSVISGLQEEVRLHDPF-----LALDGKEDG-LFFYR 247 Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375 + RA + + LF GE+ Sbjct: 248 KII--------EESRAYLQKNGVLLFEIGYDQGEA 274 >gi|313892833|ref|ZP_07826413.1| type I restriction-modification system, M subunit family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442616|gb|EFR61028.1| type I restriction-modification system, M subunit family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 97 Score = 41.5 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 17/112 (15%) Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 + K + G + + + +++ ++ + +LSK Sbjct: 3 KADWKHYESNMFSGFDTDTTMLRISAMNLMLHSIKY-------PQVDYKDSLSKQNTIHD 55 Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + CL+NPPF K DK+ + E ++ +LFL Sbjct: 56 AYTICLANPPF--KGSLDKETINDELRSITNN--------TKKTELLFLALF 97 >gi|296126924|ref|YP_003634176.1| hypothetical protein Bmur_1897 [Brachyspira murdochii DSM 12563] gi|296018740|gb|ADG71977.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563] Length = 410 Score = 41.5 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 19/193 (9%) Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 F + NPP+ ++ E + F K +DG K Sbjct: 12 FDVVIGNPPY------VRNRELDEKQKMYFNSFY----KSADGQYDLYQLFYEKGINILK 61 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWIL 410 + S+ S ++R ++L+N +I+ I+ + ++F + + Y+ IL Sbjct: 62 ENSILGYITSNKF----TIASYGKKLREYILDNCIIKQIIDVSMINVFKKVSTYPYIIIL 117 Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE---GKKRRIINDDQRRQILDIYVSRENGKFSRM 467 K E ++ ++N+ +++ +ND+ + IL S Sbjct: 118 EKDK-ENIDNIIKYKKVLTEEELLKNKLECIEQKSYLNDENKNFILRKIPDFFVKIDSMS 176 Query: 468 LDYRTFGYRRIKV 480 L + + Sbjct: 177 LKLGDIATIKETI 189 >gi|224418935|ref|ZP_03656941.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491] Length = 266 Score = 41.5 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%) Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 P ++F L ILS + KV I+A + EGK R+ N +I Sbjct: 1 PRNIFPHQVEEFSLLILSKQ----ENKKVFFIDAQKFYL---KEGKYNRLTN---IDRIY 50 Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513 D Y+S+++ SR++DYR K + I D L + + + Sbjct: 51 DEYLSKQDSDISRLVDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVESKKD 110 Query: 514 F-WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565 +D ++ YG++E F++ S KS++ + K++ I+ + Sbjct: 111 EVLMDCYNVGIKDFEDYGFSEVFLEFSPKSDQKRIEKLRIQAYDILLSMRGVS 163 >gi|163758715|ref|ZP_02165802.1| BseRI endonuclease, putative [Hoeflea phototrophica DFL-43] gi|162284005|gb|EDQ34289.1| BseRI endonuclease, putative [Hoeflea phototrophica DFL-43] Length = 1011 Score = 41.5 bits (96), Expect = 0.52, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 34/231 (14%) Query: 111 AKAIFEDFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169 + E DF I ++ + + K + E V V+ +YE +I +E Sbjct: 254 IHGVVEA-DFFDWIVEIDGGDVFVRTLAKRLARFEW--SKVEQDVLKVLYESVIG---TE 307 Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-------TD 222 + ++ TP + + + + + D CG+G FL Sbjct: 308 TRQRLGEYYTPDWLADIVVQ---------ETVTEPLNSRVLDAACGSGTFLFHAIRRYIV 358 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI-----RRLESDPRRDLSKNIQ 277 A G +L P + L+ R ++ D + Sbjct: 359 AAEAKGMTVGQLIDGVTEHVIGMDLHPVAVTLARVTYLLAIGRHRLIDPDRGTIHIP-VY 417 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFG 325 G +L + N +KD + + RF Sbjct: 418 LGDSLQ--WQEQNTDLWTAGNLVIQTDDKKDLFGNKLSFPDALVDDAARFD 466 >gi|153874389|ref|ZP_02002629.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152069145|gb|EDN67369.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 159 Score = 41.5 bits (96), Expect = 0.52, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 20/161 (12%) Query: 81 YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICK 138 +N S++ + LES + +F F+ I R L+ Y + + Sbjct: 16 FNESQFHRENV----IAKELESVVNTF------------FTGKIRRQTLQSIDSYYAVIR 59 Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDA 197 + + + IYE+ + + + ++ TP ++V D Sbjct: 60 R-EAANIVNHHEKQKFLKVIYENFYKTYNPKGADRLGIVYTPNEIVQFMLKSTDYLLDKH 118 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 + + DP GTG F+T+ + ++ K Sbjct: 119 FNRLLADKNVEILDPATGTGTFITELIEYLPTTTLSAKYKK 159 >gi|282881655|ref|ZP_06290318.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1] gi|281304414|gb|EFA96511.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1] Length = 1932 Score = 41.5 bits (96), Expect = 0.52, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 80/257 (31%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ +L D + +P+ G G F+ + V Sbjct: 104 AFYTPKEITDTLADMLAD--------YSVRPARMLEPSAGVGVFV----DSVLRHSPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRL--ESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293 + + ++L T ++R L + R + I+ F Sbjct: 152 V----MAFEKDLLTGT--------ILRHLYPDHKMRTCGFEKIE--------KPFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + ++ GR + K G Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDTVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + V LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFRQANLVSAVRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SN--RKTEERRGKVQLI 425 K E + + + Sbjct: 295 QKHLNKKEMSQDERLMT 311 >gi|255743728|ref|ZP_05417686.1| hypothetical protein VCH_000022 [Vibrio cholera CIRS 101] gi|255738589|gb|EET93976.1| hypothetical protein VCH_000022 [Vibrio cholera CIRS 101] gi|259156263|gb|ACV96210.1| conserved hypothetical protein [Vibrio cholerae Ban5] gi|259156380|gb|ACV96325.1| conserved hypothetical protein [Vibrio cholerae Ind5] Length = 1246 Score = 41.5 bits (96), Expect = 0.53, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 46/191 (24%) Query: 127 LEKAGLLYKICKNFSGIELHPD---------TVPDRVMSNIYE---HLIRRFGSEVSEGA 174 L A L I F+ ++ D V+ +YE + ++ + + Sbjct: 159 LPDAISLNDIIDAFNVVDTDAQANDSSEETIWQSDDVLGWMYESYNNAKKKAHKDSGDKT 218 Query: 175 E--------DFMTPRDVVHLATA---------------------LLLDPDDALFKESPGM 205 E TPR VV + P + P Sbjct: 219 EYNKVSLQSQVYTPRWVVQFLVENSLGKMYLEMYPHSEIKQRYKIANAPTTQIRAPKPLH 278 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 DP CG+G FL A + + +G + + + + + ++ Sbjct: 279 EVRTIDPACGSGNFLLYAFDFYYELYLDQIEN-----YGADYDEKDIPKLIIENNLHGID 333 Query: 266 SDPRRDLSKNI 276 D R + Sbjct: 334 LDDRAIQLAQL 344 >gi|163783014|ref|ZP_02178009.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I [Hydrogenivirga sp. 128-5-R1-1] gi|159881694|gb|EDP75203.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I [Hydrogenivirga sp. 128-5-R1-1] Length = 446 Score = 41.5 bits (96), Expect = 0.53, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 84/258 (32%), Gaps = 35/258 (13%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP VV L+ D + +P FL + Sbjct: 19 KDFGIFFTPDWVVDFTIGLIEDEGLEFDNLK------ILEPAASGCQFL-----YGVKKN 67 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G E+ E + SD + + T +R Sbjct: 68 RRDIFTKAIRKVGVEVNREV--------IEHVHASDGITIVHHDYLLWDT-------EER 112 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + + NPP+G D ++ ++K E + + + G K Sbjct: 113 YDLIIGNPPYGIPSLSDHYTIKIDNKTKEKYK---KVFETWHGKYNVYGAFIEKSIKLLK 169 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 G+ ++ ++ + ++R++L EN E I+ + +++F T + +L Sbjct: 170 DNGQLLFIVPATFMILDE----FKKLRKFLSENGKTE-IIYMGSEVFKPEADVTTV-VLK 223 Query: 412 NRKTEERRGKVQLINATD 429 RK+ E + K++L + Sbjct: 224 FRKSREEKNKLKLYEHRE 241 >gi|282859062|ref|ZP_06268194.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010] gi|282588142|gb|EFB93315.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010] Length = 1553 Score = 41.5 bits (96), Expect = 0.54, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|237707974|ref|ZP_04538455.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457960|gb|EEO63681.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 1227 Score = 41.5 bits (96), Expect = 0.54, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|222109151|ref|YP_002551416.1| helicase SNF2 family [Agrobacterium vitis S4] gi|221738425|gb|ACM39290.1| helicase SNF2 family [Agrobacterium vitis S4] Length = 1701 Score = 41.5 bits (96), Expect = 0.54, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 69/260 (26%), Gaps = 58/260 (22%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S TP ++ + + + + +P GTG F Sbjct: 156 DYASLARCTQYAHFTPEFIIRAIWS--------GLQRLGWLGGRVLEPGIGTGLFPALMP 207 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 G EL+P T + I G Sbjct: 208 EAFR---------YKSYVTGVELDPVTARIVR------------LLQPKARIVNGDFSRT 246 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 DL G + + NPPF + + A F+ + Sbjct: 247 DL--GVIYDLAIGNPPFSDRAVRSDRAYRSLGLRLHDY---------------FIARSID 289 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401 L+ G AA V S +G +S R + ++ + A + LP F T Sbjct: 290 LLKP----GALAAFVTS-----SGTMDKADSTARGHIAKSADLIAAIRLPEGSFRRDAGT 340 Query: 402 NIATYLWILSNRKTEERRGK 421 ++ L RK E G Sbjct: 341 DVVVDLLFFRKRKMGEVEGD 360 >gi|218296494|ref|ZP_03497222.1| hypothetical protein TaqDRAFT_3792 [Thermus aquaticus Y51MC23] gi|218243036|gb|EED09568.1| hypothetical protein TaqDRAFT_3792 [Thermus aquaticus Y51MC23] Length = 1053 Score = 41.1 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 50/227 (22%) Query: 37 PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGS- 93 PF LR R + G + + V Y+FY+T + S L Sbjct: 179 PFRFLR-------NKYEEARRLWGPKGTAKVAEAFLRGVDEWFYAFYDTELFQDSFLEHL 231 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 NLE ++ + + I + +T + GLL + + + Sbjct: 232 EQDPKNLEDFLLA----MEEILGFGAWQATFGQ----GLL----------HYNYRAIDED 273 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP------------------D 195 V YE + ++ + + TP + L + ++ D Sbjct: 274 VFGKAYETFL----AQGRKEGGIYYTPSSLTALMAKMAVEETLWPRARELDRALGEERYD 329 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242 +A + DP G+G FL + V + ++ + Sbjct: 330 EAEARARDLTQVAFLDPAAGSGSFLVKILREVVEVYAYLEERTRWAL 376 >gi|189234369|ref|XP_974411.2| PREDICTED: similar to CG1074 CG1074-PA [Tribolium castaneum] Length = 464 Score = 41.1 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 31/204 (15%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVM-----SNIYEHLIRRFGSEVSEGAEDFMTP 180 +L+ + + + P P V +N LIR+ + + + Sbjct: 139 KLKDPDVCLHYIEYYGTRANDPPENPYDVFFGRWVTNGLRQLIRKLSLKTRKFIGNTSMD 198 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--------VADCGS 232 + L D + + DP G+G L A + Sbjct: 199 PQLSLLMANQAQVKDGDI----------VLDPFVGSGSLLVAAAEFGGFVLGGDIDYLML 248 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 H + P + + E+ A M L+ L + S+ +D F Sbjct: 249 HARTRPSRIKQKERAADESI---KANMEQYNLQHKYLDVLIND--FASSFWRD---DVEF 300 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH 316 +++PP+G + ++ KE+ Sbjct: 301 DSIITDPPYGIREATERVGTSKEN 324 >gi|308184259|ref|YP_003928392.1| type II adenine specific methyltransferase [Helicobacter pylori SJM180] gi|308060179|gb|ADO02075.1| type II adenine specific methyltransferase [Helicobacter pylori SJM180] Length = 545 Score = 41.1 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 43/235 (18%) Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178 +L K L + + I + + + + + YE + + Sbjct: 58 NKLNKYANKSLKGVHNHQELILKYLQILENSSDLEKLGSYYEE---ELSNTTRNLEGIYY 114 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L P D ++ DP G+G F+ A+ Sbjct: 115 TPNKIVE---QLFTLPKDFDISQA-----IFCDPAVGSGNFIMHALKL---------GFK 157 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G + + A+ +R++ D NI Q T +F +N Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTN 209 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+GKK+ +++ + K L + D + LF + N L+ + G Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFIASLNYLKENAHLG 255 >gi|315930742|gb|EFV09752.1| type II restriction-modification enzyme domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 88 Score = 41.1 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 ++E +++ + F TP + L P + ++ +R + D CG G Sbjct: 1 LFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLHEMLSKNSKALR-VVDYACGAG 54 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH 243 FL N + + ++ Sbjct: 55 HFLNTYANELKRYLTEDELKEHYKIF 80 >gi|320095082|ref|ZP_08026791.1| hypothetical protein HMPREF9005_1403 [Actinomyces sp. oral taxon 178 str. F0338] gi|319977949|gb|EFW09583.1| hypothetical protein HMPREF9005_1403 [Actinomyces sp. oral taxon 178 str. F0338] Length = 1245 Score = 41.1 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 8/97 (8%) Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI- 239 RD A + +D + DP CG+G LT A + + P Sbjct: 266 RDRFDYLVAPVPGQEDQGMGIGDPKDFRVIDPACGSGHMLTYAFDVLWQMYVEAGYPKRR 325 Query: 240 -------LVPHGQELEPETHAVCVAGMLIRRLESDPR 269 G E++ + ++++ +E DP Sbjct: 326 IAAAILDNNLFGAEIDARAVQLASFALMMKAVEHDPG 362 Score = 38.8 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 28/225 (12%) Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 R+ ++NPP+ + E ++ R +F+ H Sbjct: 484 LEDSRYTTMVANPPYLVSKKFGDGLKEYARQSYPDSRQDLAT--------MFMQHALTFT 535 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 + G L + S R LL+N I++I L L + Sbjct: 536 RKRASIGT--------LTLNSWMLTSSFERFRIRLLKNASIQSIAMLGRGL-AGIQLDFC 586 Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI----INDDQRRQILDIYVSRENG 462 + N R ++ I A++ TS N + +R+ N I Y Sbjct: 587 ATVFWNACPRSDRT-IRFITASEPATSPSNPIRIQRLQEAAQNPKSSDNIEVTYSRITRM 645 Query: 463 KFSRMLDYRT------FGYRRIKVLRPLRMSFILDKTGLARLEAD 501 S L + F +V RP + D RL + Sbjct: 646 PRSAFLHSISDQILEGFKTPLAEVARPRQGLATADNERFLRLWFE 690 >gi|325981710|ref|YP_004294112.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Nitrosomonas sp. AL212] gi|325531229|gb|ADZ25950.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Nitrosomonas sp. AL212] Length = 278 Score = 41.1 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 35/168 (20%) Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 +LI + F + E + PR L L+ + D G+G Sbjct: 68 YLIGKRAFFDLTFKVTEAVLIPRPETELLVEWALE------LIPSQKFCKVLDLGTGSGA 121 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 H P +L P VC + + + N+ + Sbjct: 122 IGISIAKH----------RPQSQVIAVDLSPAAIDVCQSN-------VEILEVANLNVIR 164 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 G+ D +G++F +SNPP+ + + H RF P Sbjct: 165 GN--WFDELSGEKFDLIVSNPPYVAE--------DDPHLQQGDLRFEP 202 >gi|78356527|ref|YP_387976.1| heptosyltransferase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218932|gb|ABB38281.1| heptosyltransferase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 344 Score = 41.1 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%) Query: 628 IGRVGYEINF-NRFFYQYQPSR---KLQDIDAELKGVEA 662 R+GY+ F NR+FY + R +++I L + Sbjct: 104 KTRIGYDRPFLNRYFYTHTVPRCFDSMEEI-ERLLQLVK 141 >gi|194743660|ref|XP_001954318.1| GF18217 [Drosophila ananassae] gi|190627355|gb|EDV42879.1| GF18217 [Drosophila ananassae] Length = 486 Score = 41.1 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 13/203 (6%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI+ + + + + L + + L ++DP GTG L Sbjct: 181 HLIKELSLKQRKFIGNTSMDAQLSLLMANQAMVQEGDL----------VFDPFVGTGSLL 230 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 231 VSAAKWGGYVLGADIDYMMVHARCRPSRISQKIREKDESIRANLKQYGCADRYMDVVVAD 290 Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S F +++PP+G + +K + K+ P S S+ L Sbjct: 291 -FSNPLWHPRISFDCIITDPPYGIREATEKVDAKANSKDSTRTDDMVHYPSTSHYSLQSL 349 Query: 340 M-HLANKLELPPNGGGRAAIVLS 361 L GGR L Sbjct: 350 YGDLLEFAAKHLRLGGRLVCWLP 372 >gi|332673306|gb|AEE70123.1| adenine specific DNA methyltransferase [Helicobacter pylori 83] Length = 545 Score = 41.1 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 28/172 (16%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 D NI Q T +F +NPP+GKK+ +++ K+H N Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKFNQNQKENFKQHFN 229 >gi|325299628|ref|YP_004259545.1| helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319181|gb|ADY37072.1| helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 1943 Score = 41.1 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ ++L T ++R L D + + + F Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + K+G GR + K GG Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRNGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296 Query: 413 R--KTEERRGKVQLI 425 K E + + + Sbjct: 297 NLSKKEMSQDERLMT 311 >gi|256840942|ref|ZP_05546450.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738214|gb|EEU51540.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1943 Score = 41.1 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ ++L T ++R L D + + + F Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + K+G GR + K GG Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRNGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296 Query: 413 R--KTEERRGKVQLI 425 K E + + + Sbjct: 297 NLSKKEMSQDERLMT 311 >gi|195343429|ref|XP_002038300.1| GM10758 [Drosophila sechellia] gi|194133321|gb|EDW54837.1| GM10758 [Drosophila sechellia] Length = 488 Score = 41.1 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 52/200 (26%), Gaps = 13/200 (6%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI+ + + + + L + L ++DP GTG L Sbjct: 180 HLIKELSLKHRKFIGNTSMDAQLSLLMANQAMVRKGDL----------VFDPFVGTGSLL 229 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 230 VSAAKWGGYVLGADIDYMMVHARCRPSRITQKVREKDESIRANLQQYGCADRYMDVVVAD 289 Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S F +++PP+G + +K + K P S S+ L Sbjct: 290 -FSNPVWHPRISFDCIITDPPYGIREATEKVEKKASAKANTRSESMVHYPSTSHYSLQSL 348 Query: 340 M-HLANKLELPPNGGGRAAI 358 L GGR Sbjct: 349 YGDLLEFSAKHLRLGGRLVC 368 >gi|193214047|ref|YP_001995246.1| Eco57I restriction endonuclease [Chloroherpeton thalassium ATCC 35110] gi|193087524|gb|ACF12799.1| Eco57I restriction endonuclease [Chloroherpeton thalassium ATCC 35110] Length = 401 Score = 41.1 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 65/247 (26%), Gaps = 50/247 (20%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 + TP +V+ +L K + +P CG FL Sbjct: 3 TKKALGAVSTPPEVIRFMLSLFSPTKTDSLK--------VLEPACGDAPFLQAFQE---- 50 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDL 286 K G E + ET N T L D Sbjct: 51 -----KFGDKHALFGVEYDAETLR----------------PPALPNFHFEQTDFLLWDD- 88 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANK 345 ++F L NPP+G ++ + R F+ + Sbjct: 89 --ERKFDLILGNPPYGIIGDRSHYPIYTFKDMKAAYRQRSETWHGKYNIYGAFIEQAVKR 146 Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405 L + G +V S+ L +R++L E+ + + L +F + Sbjct: 147 L---GDAGELIFVVPSTWMLL-----QDFKLLRKFLAESGELH-VYYL-GRIFPGVQVTA 196 Query: 406 YLWILSN 412 + L Sbjct: 197 VVIHLKK 203 >gi|295104582|emb|CBL02126.1| DNA methylase [Faecalibacterium prausnitzii SL3/3] Length = 1551 Score = 41.1 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 94/342 (27%), Gaps = 77/342 (22%) Query: 105 ASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-YEH 161 ++ N +AI F E+ +L + + + + Sbjct: 498 QKYARNIEAIRTLFKLEEEHRGATAEEQQVLSQYVGWGGLADAFDPNKENWSAEYTQLKE 557 Query: 162 LIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ + + + T V+ + + +P+ G G F Sbjct: 558 LLSEDEYAAARASTLNAHYTGPTVIR--------GIYDAVERMGFQSGNILEPSMGVGNF 609 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSK 274 +AD +G EL+ T + A + + E+ RRD Sbjct: 610 FGMLPTSMAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF-- 657 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + + N PFG+ DK +K G S Sbjct: 658 -----------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIH 685 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + F + GG A V S +S R+ + E + + LP Sbjct: 686 NYFFAKAI-----DQIRPGGVIAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLP 735 Query: 395 TDLF---FRTNIATYLWILSNRKTEERRG--KVQLINATDLW 431 + F T++ + + L R VQL D + Sbjct: 736 NNAFRANAGTDVVSDIIFLQKRDRPADIEPAWVQLGKTEDGF 777 >gi|213961903|ref|ZP_03390169.1| hypothetical protein CAPSP0001_2286 [Capnocytophaga sputigena Capno] gi|213955692|gb|EEB67008.1| hypothetical protein CAPSP0001_2286 [Capnocytophaga sputigena Capno] Length = 1050 Score = 41.1 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 62/233 (26%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKA---GLLYKICK-NFSGIELHPDT----VPDRV 154 Y+ +FE +R LL + + NF+ E P+ V + Sbjct: 328 YLNG------GLFERDALDEKTSRFPAKYFESLLTMLSQYNFTIDENDPNDAEVGVDPEM 381 Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT---------------------ALLLD 193 + I+E+L+ E ++ F TP+++V + Sbjct: 382 LGRIFENLL-----EDNKDKGAFYTPKEIVQYMCRESLIAYLQTDQKEDDKERIRQFVTT 436 Query: 194 PDDALFKESPGMIR------TLYDPTCGTGGFLTDAM------------NHVADCGSHHK 235 D L E I + DP G+G F + N V + Sbjct: 437 HDVDLLGELKEEIEQKLIDVKICDPAIGSGAFPMGLLRELFFCRSAIEPNIVEKAADIKR 496 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSK 284 +G ++E + + + + ++ N I QG++L + Sbjct: 497 HIIQNNIYGVDIERGAVEIARLRFWLALIVDEKSPEVLPNLDFKIMQGNSLLE 549 >gi|160902977|ref|YP_001568558.1| hypothetical protein Pmob_1534 [Petrotoga mobilis SJ95] gi|160360621|gb|ABX32235.1| conserved hypothetical protein [Petrotoga mobilis SJ95] Length = 1120 Score = 41.1 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 30/176 (17%) Query: 30 DFGKV------ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83 +FG IL E R+ + F + L G F Sbjct: 282 EFGDYQNFYNDILEPLFY-------EALRTDRSDADHYFSRFDCKLPFL---NGGLFDPI 331 Query: 84 SEYSLSTLG---STNTRNNLESYIA-SFSDNAKAIFEDFDFS-STIARLEKA-----GLL 133 + Y+ + + +N++ SD IF+ F+F+ + LEK LL Sbjct: 332 NNYNWVEIDIMIPNDLFSNIDKTQEIDQSDGILDIFDRFNFTVNEEEPLEKEVALDPELL 391 Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 KI + + I +V+ L +F ++ + TPR++VH Sbjct: 392 GKIYEKLNAIREDNFDEYVKVLKAGKRSLETKF----NKEYGVYYTPREIVHYMCQ 443 >gi|260583302|ref|ZP_05851077.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Haemophilus influenzae NT127] gi|260093662|gb|EEW77575.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Haemophilus influenzae NT127] Length = 292 Score = 41.1 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 68/214 (31%), Gaps = 34/214 (15%) Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR + L +E+P + D GTG + +A IP Sbjct: 94 PRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIPLE 152 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 G +L + A+ + N+Q + D TG +F +SNP Sbjct: 153 --IIGVDLMSDVVALAQSN----------AERNQLNVQFLQSCWFDNITG-KFDLIVSNP 199 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAI 358 P+ + EH + RF P +++G L H+ N G Sbjct: 200 PYI--------DAQDEHLHQGDVRFEPLSALVANGEGYADLRHIIELASSYLNSNGVL-- 249 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390 L GE ++R LEN +E + Sbjct: 250 ------LLEHGWQQGE-KVRSIFLENYWEMVETV 276 >gi|258648305|ref|ZP_05735774.1| putative DNA methylase [Prevotella tannerae ATCC 51259] gi|260851592|gb|EEX71461.1| putative DNA methylase [Prevotella tannerae ATCC 51259] Length = 2065 Score = 41.1 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGVFTETFAKNAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRTYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|172055088|ref|YP_001806415.1| hypothetical protein cce_5003 [Cyanothece sp. ATCC 51142] gi|171701369|gb|ACB54349.1| hypothetical protein cce_5003 [Cyanothece sp. ATCC 51142] Length = 1270 Score = 41.1 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----------------ILVPHGQELEPET 251 + DP CG+G FL A + + + +G + P + Sbjct: 475 KVCDPACGSGHFLLAAARRIGKELARIRTGEVHPSPEPLSQAVRDVIQHCIYGVDYNPLS 534 Query: 252 HAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282 +C + I + P L I+ G++L Sbjct: 535 VDLCKVALWIEGFCKGYPLNFLDHRIKCGNSL 566 >gi|2769574|emb|CAA73269.1| methylase [Lactococcus lactis subsp. cremoris] Length = 230 Score = 41.1 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 34/163 (20%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 E LI+ E + + TP+ +V + + + + + T +P G G F Sbjct: 4 EKLIK--SKERVQQHGEVFTPQWMVKKMLDV-----EGIKQACENIDATFLEPAAGDGNF 56 Query: 220 LTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270 L + + +G E + + + MLI L Sbjct: 57 LVAILERKLKVVTEQFSEGHWGTKSLFALSSIYGIEFLADNLEIARSRMLIHYLNWYEEI 116 Query: 271 DLSK-----------------NIQQGSTLSKDLFTGKRFHYCL 296 + NI +G+TL+K Sbjct: 117 FQEQLHSTTDLYKSAMYIIRRNIVRGNTLTK-KHPDYDIPIMF 158 >gi|1709169|sp|P52284|MTR1_PBCVX RecName: Full=Modification methylase CviRI; Short=M.CviRI; AltName: Full=Adenine-specific methyltransferase CviRI gi|281234|pir||S26851 site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) CviRI - Chlorella virus CV-XZ6E gi|323329|gb|AAA42900.1| TGCA adenine methyltransferase [Chlorella virus] Length = 379 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 61/255 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 +R + F TP+D+ ++ + + +PTCGTG F++D Sbjct: 13 KRLSKKERSDGGVFFTPKDIR----DIVFEELGDF------EPTNILEPTCGTGEFISDC 62 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTL 282 K+ G E++P + + D SKN I + Sbjct: 63 R----------KVYKNSRIIGVEIDPRSAELAR--------------DGSKNEIIVHDFM 98 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + D T ++F + NPP+ + K + S + + L Sbjct: 99 TWD--TDEKFDLIIGNPPYFTRPTGFKHDPSV----------------VKCRSNICIEVL 140 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV--ALPTDLFFR 400 + G A+VL S L + L D ++ + A+ + F Sbjct: 141 HKCITRHLADNGMLAMVLPVSILNSKFYTPTID------LITDTMDVVSARAIKKNNFMG 194 Query: 401 TNIATYLWILSNRKT 415 TN+ ++I+ R Sbjct: 195 TNVRVMVFIIRKRTP 209 >gi|332637184|ref|ZP_08416047.1| helicase A859L [Weissella cibaria KACC 11862] Length = 1084 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 46/273 (16%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNL 100 LE + A K + V ++ + T+ T +++ Sbjct: 797 LEEAKVAYEAKQQEIEQNFRKEVEIVVAEKTK--EVAKDTAETILKKSEEKKKTTVEDDI 854 Query: 101 ESYIASFSDNAKAIFEDFD--------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152 + + F+ + + F +TI + + F + + + Sbjct: 855 RARLRGFARTIPSFLMAYGTPETTLASFDTTIKDAVFQEVTGITLEQFRTLRDTYNFFDE 914 Query: 153 RVMSNIYEHLIRR-------FGSEVSEG---------AEDFMTPRDVVHLATALLLDPDD 196 V + + + F + E TP+ VV + L++ D Sbjct: 915 VVFDQSIQEFLNKRVELADYFNDDNEEDIFDYIPPQQTNQIFTPKKVVKIMVDELMEEDP 974 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELE 248 +FK+ +T D +G ++T+ + + D K G Sbjct: 975 EVFKD---PNKTFADLYMKSGLYITEIVKRLYDGLEEQIPDDSSRLKHILENQVFGFAPT 1031 Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + I +SD + +I T Sbjct: 1032 EIIYNIARN--FIFGFDSDAKNINDSHIVYLDT 1062 >gi|282881043|ref|ZP_06289733.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281305119|gb|EFA97189.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 2064 Score = 41.1 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGF---LTDAMNHVADCGSH---HKIPPILVPHG 244 ++ + IR DP+ G G F + V +I L P+G Sbjct: 111 IVSAIADALNVTDVQIRRCLDPSAGMGAFTETFAKSAGMVDAMDKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MIYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|188997570|ref|YP_001931821.1| conserved hypothetical protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932637|gb|ACD67267.1| conserved hypothetical protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 1209 Score = 41.1 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 36/183 (19%) Query: 52 RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111 +S R + + K F N + L YI FS N Sbjct: 289 KSLYRYENKFLISKEEVISELFK--NIPFINGGLFDC--LDKDKI------YIDGFSRNE 338 Query: 112 KA---IFEDFDFSSTIAR-------LEKAGLLYKICKNFSGIELHPDTVPDRV------- 154 K I ++ FS L K + + D Sbjct: 339 KKQAKISDELFFSQEEKTVDLSKYGLGKNAKVRGLIDILKSYNFTTDEATPIDQEIALDP 398 Query: 155 --MSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + ++E+L+ + E + + + TPR++V + K Sbjct: 399 ELLGKVFENLLASYNPETNTTARKATGSYYTPREIVDYMVE---ESLREYLKTKVPEAEN 455 Query: 209 LYD 211 ++D Sbjct: 456 IFD 458 >gi|307945932|ref|ZP_07661267.1| Eco57I restriction endonuclease [Roseibium sp. TrichSKD4] gi|307769596|gb|EFO28822.1| Eco57I restriction endonuclease [Roseibium sp. TrichSKD4] Length = 1113 Score = 41.1 bits (95), Expect = 0.65, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 33/162 (20%) Query: 28 HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87 ++G+ P LEP + + G F Y Sbjct: 277 RGEYGEY--P----NFFNDVLEPLFYEALATERHDNYYDHLKCRIPFLNGGLFEAIRNYD 330 Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 + + I + + IF+ FD + R ++ Sbjct: 331 W-----------VNTDILLDNAIFQEIFDIFDLYNFTVREDE-------------PLDKE 366 Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 V ++ ++E+LI +G+ + TPR++VH Sbjct: 367 VAVDPEMLGKVFENLI---PENERKGSGTYYTPREIVHYMCQ 405 >gi|295396904|ref|ZP_06807028.1| adenine-specific methyltransferase [Aerococcus viridans ATCC 11563] gi|294974838|gb|EFG50541.1| adenine-specific methyltransferase [Aerococcus viridans ATCC 11563] Length = 344 Score = 41.1 bits (95), Expect = 0.65, Method: Composition-based stats. Identities = 48/321 (14%), Positives = 91/321 (28%), Gaps = 55/321 (17%) Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL-------- 162 + E + L+ L I+ P + IY ++ Sbjct: 20 IQEALEFSYLEALFETLQN---LAD--GEVQQIDQRPSDEEAEQLREIYSNINLQEYEAE 74 Query: 163 -IRR---FGSEVSEGAED-----FMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYD 211 IR+ F E A+ MTP + L L L ++ T +D Sbjct: 75 DIRKAVQFAFIEGEKADQLQANYHMTPEAIAVLMGYFATKLVDHGHLADKADHTEITFFD 134 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 T GTG N + G + G + + ++ ++ + Sbjct: 135 STMGTGNLYAIIYNALKASGYKIQG------FGYDNDDLMLSIADVSTRLQDI------- 181 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 N+ G +L + + P G + KN E G+ Sbjct: 182 -PANLYLGDSLQN--LIVPPSDLIVGDLPLGYYPVDEVADTYSSAKNREEGQHAFVH--- 235 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391 L + L+ G IV + E+ + E+ +A++ Sbjct: 236 ----YLMVEQGLRYLKPNGWG---IYIVPAGLIQDENIKTLIEA-----IGEHGYFQALL 283 Query: 392 ALPTDLFFRTNIATYLWILSN 412 +LP++LF + ++ Sbjct: 284 SLPSNLFNNEKSRKAILLVQK 304 >gi|294791107|ref|ZP_06756265.1| putative Helicase [Scardovia inopinata F0304] gi|294459004|gb|EFG27357.1| putative Helicase [Scardovia inopinata F0304] Length = 1805 Score = 41.1 bits (95), Expect = 0.65, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 1/103 (0%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCG 215 N+YE R ++ TP ++V+ L+ + F K T+ DP G Sbjct: 929 NLYESFFRTAFKSDADKLGIVYTPLEIVNYILHLVDNKLTEHFGKHLEDDRVTILDPFTG 988 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 TG F+ + + + + E+ + + + Sbjct: 989 TGTFIVELIRSGLISPNKLQRKYRSEIFANEIMLLAYYIAMVN 1031 >gi|190347713|gb|EDK40042.2| hypothetical protein PGUG_04140 [Meyerozyma guilliermondii ATCC 6260] Length = 256 Score = 41.1 bits (95), Expect = 0.65, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 29/183 (15%) Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--I 236 TP + L+ KE R + D CG GG ++ G+ Sbjct: 52 TPEALAIFIARLV--------KELLPNARKILDVCCGGGGNAIQFAHYFPSVGAVDISPN 103 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 H + + + + + ++ + I G + + F + Sbjct: 104 NLQCTVHNAGIYGVLDRI-----WTQLGDWNELQNKTDWIPYGIRMKNKKSKNEMFDFVF 158 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGEL------------GRFGPGLPKISDGSMLFLMHLAN 344 +PP+G K + E FG LP+ S+ + + + Sbjct: 159 CSPPWGGPSYKKSGQFDLEQMKPFNLETLCGQMRQFSSSFGFLLPRQSN--LDQIRDVTE 216 Query: 345 KLE 347 KL+ Sbjct: 217 KLK 219 >gi|294647085|ref|ZP_06724693.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a] gi|292637571|gb|EFF55981.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a] Length = 1464 Score = 41.1 bits (95), Expect = 0.66, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|289424058|ref|ZP_06425844.1| methyltransferase [Peptostreptococcus anaerobius 653-L] gi|289155483|gb|EFD04162.1| methyltransferase [Peptostreptococcus anaerobius 653-L] Length = 382 Score = 41.1 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 36/148 (24%) Query: 204 GMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPIL----------- 240 R L DP CG+G L +A +++ Sbjct: 192 RPGRILVDPMCGSGTILIEAAMIGMNMAPGMNREFISEKWRTIDKKIWWDVRRDAFDQLN 251 Query: 241 -----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G +++PE+ + I ++ ++ KD + K + Sbjct: 252 DNEDFKIYGYDIDPESIKIAKHNAEIAGVDQYIDFAVAD--------VKDFKSDKEYGMI 303 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++NPP+G++ E ++ + G R Sbjct: 304 ITNPPYGERLEDEEAVKILYKEMGYAFR 331 >gi|282877664|ref|ZP_06286479.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310] gi|281300236|gb|EFA92590.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310] Length = 1433 Score = 41.1 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|210062467|ref|YP_002300484.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|134270009|emb|CAL91882.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 262 Score = 41.1 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 14/133 (10%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + + ++E L + + F+TP D+ L T ++ + D Sbjct: 112 DIFNELFEDLF--LTGKKGDSFGQFLTPTDISELLTDIVYTTSKDK--------YKIADS 161 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---LEPETHAVCVAGMLIRRLESDPR 269 GTG + + + I + + + + + A + M+ L+ Sbjct: 162 CAGTGSLIFPLIKRIFFKEGFEGIQKVELFYNDKDSFVSQLFIAQILTNMIYHNLDFKSL 221 Query: 270 RDLSKN-IQQGST 281 N I + T Sbjct: 222 HVYIGNAITEYDT 234 >gi|227504932|ref|ZP_03934981.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC 6940] gi|227198441|gb|EEI78489.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC 6940] Length = 1243 Score = 41.1 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 70/287 (24%), Gaps = 40/287 (13%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 D S L K Y+ E+ + +V+ ++YE R+ + SE Sbjct: 838 DALSDAKLESETESLTK---FYESV-RVRASEVSSASGKQQVIKDLYERFFRKAFKKQSE 893 Query: 173 GAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V K + DP GTG F+ + Sbjct: 894 ALGIVYTPVEIVDFILRSADQISRWHFGKGLTDEGVHILDPFTGTGTFMVRLLQSGLIEP 953 Query: 232 SHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 H E+ T+ A R E +P +I Sbjct: 954 DDLVRKYATELHATEIMLLAYYVAAVNIETTYNALQAERAQRNGEPEPEYVPFDSIALAD 1013 Query: 281 TL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321 T D+ K F + + NPP+ D + Sbjct: 1014 TFQIHEEGDILDLKVFKENNAAIQRQIDAPINIIIGNPPYSVGQTSANDNNQNLKYPTLD 1073 Query: 322 GR----FGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSS 363 R F + S + G A V + Sbjct: 1074 KRIEETFVANSTATNKNSLYDSYLRAFRWSIDRLGTHGVMAFVSNGG 1120 >gi|270001932|gb|EEZ98379.1| hypothetical protein TcasGA2_TC000838 [Tribolium castaneum] Length = 359 Score = 41.1 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 31/204 (15%) Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTP 180 +L+ + + + P P V ++N LIR+ + + + Sbjct: 34 KLKDPDVCLHYIEYYGTRANDPPENPYDVFFGRWIANGLRQLIRKLSLKTRKFIGNTSMD 93 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--------VADCGS 232 + L D + + DP G+G L A + Sbjct: 94 PQLSLLMANQAQVKDGDI----------VLDPFVGSGSLLVAAAEFGGFVLGGDIDYLML 143 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292 H + P + + E+ A M L+ L + S+ +D F Sbjct: 144 HARTRPSRIKQKERAADESI---KANMEQYNLQHKYLDVLIND--FASSFWRD---DVEF 195 Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH 316 +++PP+G + ++ KE+ Sbjct: 196 DSIITDPPYGIREATERVGTSKEN 219 >gi|218961241|ref|YP_001741016.1| hypothetical protein CLOAM0937 [Candidatus Cloacamonas acidaminovorans] gi|167729898|emb|CAO80810.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 1251 Score = 41.1 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 70/274 (25%), Gaps = 80/274 (29%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL---------ESFVKVAG 77 + + IL L + + R+ ES Sbjct: 300 DSSYYKA-ILQNLFFATLNTEMNKDKENSRKFRREIKSKMNPDFNVHTLFRYESLFHHPE 358 Query: 78 YS----FYNTSEYS---LSTLGSTNTRNNLESYI--ASFSDNAKAIFE------------ 116 F N + L + T+NN +YI FSD + + Sbjct: 359 QVIDEYFANIPFLNGGLFECLDTEITQNNNNNYIRIDGFSDRPDNVLKVPDELFFSDKEQ 418 Query: 117 DFDFSSTIARLEKAGLLYKICK-----NFSGIELHPDTV----PDRVMSNIYEHLIRRFG 167 D D + K + + F+ E P ++ ++E+L+ + Sbjct: 419 DIDLNEFYGTTNKRYQVCGLLNILNSYKFTVTENTPIEEEVALDPELLGRVFENLLASYN 478 Query: 168 SEVS----EGAEDFMTPRDVVHLATA----------------------------LLLDPD 195 E F TPR++V LL D Sbjct: 479 PETKTTARHETGSFYTPREIVDYMVDESLIAYLLNELPHSTKAEAEDSELKLRLLLYYTD 538 Query: 196 DALFKESPGMIR--------TLYDPTCGTGGFLT 221 + + + + DP CG+G FL Sbjct: 539 EDHLFNPEEVDKLIYAIDNLKIIDPACGSGAFLM 572 >gi|121608713|ref|YP_996520.1| putative DNA methylase [Verminephrobacter eiseniae EF01-2] gi|121553353|gb|ABM57502.1| putative DNA methylase [Verminephrobacter eiseniae EF01-2] Length = 928 Score = 41.1 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 58/240 (24%), Gaps = 68/240 (28%) Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRT------- 208 +I+ +I+ + GA T + L D G Sbjct: 284 DIFGSMIQAVADDEERGALGMHYTSVPNILKVLNPLFLDDLRAQLAEAGENERKLLNLRK 343 Query: 209 ------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA--------- 253 ++DP CG+G FL A + + + G E+ Sbjct: 344 RMARIRVFDPACGSGNFLVIAYKKMREIEAEINRRRGEPHWGSEIPLTNFRGIELRDFPA 403 Query: 254 -VCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDL------------- 286 + ++I + D K I G+ L D Sbjct: 404 EIARLALIIAEFQCDVLYRGQKEALAEFLPLDAQNWIICGNALRLDWLSVCPSTGTGAKL 463 Query: 287 ----------------FTGKRFH-YCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGL 328 F + Y NPP+ G W+ + + + R L Sbjct: 464 VADDLFGMPLDQSEIDFKNEGGETYICGNPPYLGSTWQSKEQKNDLKAIFDHYTRNWKSL 523 >gi|53711433|ref|YP_097425.1| putative DNA methylase [Bacteroides fragilis YCH46] gi|154490868|ref|ZP_02030809.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC 43184] gi|189461180|ref|ZP_03009965.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136] gi|189464476|ref|ZP_03013261.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM 17393] gi|198277329|ref|ZP_03209860.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135] gi|218131441|ref|ZP_03460245.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697] gi|237713347|ref|ZP_04543828.1| conserved hypothetical protein [Bacteroides sp. D1] gi|255012137|ref|ZP_05284263.1| putative DNA methylase [Bacteroides fragilis 3_1_12] gi|262406723|ref|ZP_06083272.1| BmhA [Bacteroides sp. 2_1_22] gi|298377030|ref|ZP_06986984.1| DNA methylase [Bacteroides sp. 3_1_19] gi|298483550|ref|ZP_07001726.1| DNA methylase [Bacteroides sp. D22] gi|313149979|ref|ZP_07812172.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|329960031|ref|ZP_08298527.1| helicase protein [Bacteroides fluxus YIT 12057] gi|46242803|gb|AAS83508.1| BmhA [Bacteroides fragilis] gi|52214298|dbj|BAD46891.1| putative DNA methylase [Bacteroides fragilis YCH46] gi|154088616|gb|EDN87660.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC 43184] gi|189432094|gb|EDV01079.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136] gi|189438266|gb|EDV07251.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM 17393] gi|198269827|gb|EDY94097.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135] gi|217986373|gb|EEC52710.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697] gi|229446586|gb|EEO52377.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355426|gb|EEZ04517.1| BmhA [Bacteroides sp. 2_1_22] gi|298266014|gb|EFI07673.1| DNA methylase [Bacteroides sp. 3_1_19] gi|298270307|gb|EFI11892.1| DNA methylase [Bacteroides sp. D22] gi|313138746|gb|EFR56106.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313158596|gb|EFR57990.1| helicase C-terminal domain protein [Alistipes sp. HGB5] gi|328533165|gb|EGF59934.1| helicase protein [Bacteroides fluxus YIT 12057] Length = 1938 Score = 41.1 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|317057869|ref|YP_004106336.1| DNA mismatch repair protein MutS domain-containing protein [Ruminococcus albus 7] gi|315450138|gb|ADU23702.1| DNA mismatch repair protein MutS domain protein [Ruminococcus albus 7] Length = 3387 Score = 41.1 bits (95), Expect = 0.69, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 62/257 (24%), Gaps = 58/257 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + ++ T ++ + + +P+CG G FL A Sbjct: 1856 EEYNAALNSVVNAHFTSPVIIRKMYT--------ALENFGFKGGKVLEPSCGIGNFLGCA 1907 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 G E++ T + + IQ + Sbjct: 1908 PT---------DKAANYQFTGVEIDSITGRIAK------------QLYPQAKIQV-TGFQ 1945 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F + N PF D+ + H + Sbjct: 1946 NADVKDNYFDVVIGNVPFANYSVTDRKYNKSNHLIHDY--------------------FI 1985 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A++ SS + A ++R + + + LP F Sbjct: 1986 LKSLDLTRAGGVVAVITSSGTMDKVSA-----KVRTEISNKAKLIGAIRLPDTAFEKNAG 2040 Query: 401 TNIATYLWILSNRKTEE 417 TN + L R Sbjct: 2041 TNAVADILFLQKRSEPN 2057 >gi|294807381|ref|ZP_06766187.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b] gi|294445401|gb|EFG14062.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b] Length = 1938 Score = 41.1 bits (95), Expect = 0.69, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|167762748|ref|ZP_02434875.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC 43183] gi|167699088|gb|EDS15667.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC 43183] Length = 1938 Score = 41.1 bits (95), Expect = 0.69, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|294776631|ref|ZP_06742100.1| N-6 DNA Methylase [Bacteroides vulgatus PC510] gi|294449546|gb|EFG18077.1| N-6 DNA Methylase [Bacteroides vulgatus PC510] Length = 1937 Score = 41.1 bits (95), Expect = 0.70, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|270295247|ref|ZP_06201448.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274494|gb|EFA20355.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1937 Score = 40.7 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + + Sbjct: 295 QKNLSKKEMSQDERLMT 311 >gi|288802618|ref|ZP_06408056.1| DNA methylase [Prevotella melaninogenica D18] gi|288334768|gb|EFC73205.1| DNA methylase [Prevotella melaninogenica D18] Length = 2067 Score = 40.7 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELEG--------------KDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG A + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|268324192|emb|CBH37780.1| hypothetical protein BSM_12570 [uncultured archaeon] Length = 1141 Score = 40.7 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 35/308 (11%), Positives = 83/308 (26%), Gaps = 79/308 (25%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 ++ L ++ + E L + S + + F+ + Sbjct: 235 LIFIKFL-----QSKGIIGEDILRYL-SEVKEDLLTPKLRQLFFGC--LDRPKDERFDID 286 Query: 98 NNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-------D 148 + Y+ + I +A +L + + + D Sbjct: 287 ERFKDVPYLNGSLFVHTEVERK-----NIDYKVRAEILKTVLQFLDSFKFVHKEQLGNGD 341 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP 203 +V ++ I+E R + +G + TP+ + + +++ + + K Sbjct: 342 SVDPEILGYIFE---RAMTARDRKGTGAYYTPKSITKYISENTIYPCIIEKTNEILKTEK 398 Query: 204 GMIRT-----------------------------LYDPTCGTGGFLTDAMNHVADCGSHH 234 G T + D CG+G FL A N + Sbjct: 399 GYKDTELIKDIEELFILPATTLKQIWEKIILKLRVLDNACGSGAFLLAAANILFWLNKKI 458 Query: 235 KIP--------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK------ 274 + +G +L P + + + +S + Sbjct: 459 NDKIGAENPDTTLKIIILVNNLYGVDLNPNGIEIAKLRLWLWLADSYEPGYIKPLPNIDY 518 Query: 275 NIQQGSTL 282 N++ G++L Sbjct: 519 NLRVGNSL 526 >gi|13399509|pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX gi|13399510|pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX Length = 393 Score = 40.7 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 44/189 (23%) Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +VV +L P + +P C G FL Sbjct: 3 TPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLRAFREA---------HGT 43 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 G E++P+ + ++ I L + + F L N Sbjct: 44 GYRFVGVEIDPKALDL---------------PPWAEGILADFLLWEPG---EAFDLILGN 85 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRA 356 PP+G E K + K + ++ FL L+ GG Sbjct: 86 PPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP----GGVL 140 Query: 357 AIVLSSSPL 365 V+ ++ L Sbjct: 141 VFVVPATWL 149 >gi|221459938|ref|NP_651557.2| CG3339, isoform D [Drosophila melanogaster] gi|220903235|gb|AAF56699.3| CG3339, isoform D [Drosophila melanogaster] Length = 4689 Score = 40.7 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 8/127 (6%) Query: 37 PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + R LE + + + + GS + L + + A + S L Sbjct: 467 GLLKINRTIAVLELFKQRMLDYKERYAGSQVLLPALSEGAAAVASSPSPDDQQQLWRFCH 526 Query: 97 RNNLESYIASFS---DNAKAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHPD 148 + + FS + +FE + +LE GL KI + F ++ + Sbjct: 527 EDVFGQTLDGFSLQLLELRQVFEAAVQFQQLEKLEVGGLRGKILTERVREIFGEFKVLFE 586 Query: 149 TVPDRVM 155 + + Sbjct: 587 QWSNVDI 593 >gi|221459933|ref|NP_001036762.2| CG3339, isoform C [Drosophila melanogaster] gi|220903234|gb|ABI31211.2| CG3339, isoform C [Drosophila melanogaster] Length = 4842 Score = 40.7 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 8/127 (6%) Query: 37 PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + R LE + + + + GS + L + + A + S L Sbjct: 467 GLLKINRTIAVLELFKQRMLDYKERYAGSQVLLPALSEGAAAVASSPSPDDQQQLWRFCH 526 Query: 97 RNNLESYIASFS---DNAKAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHPD 148 + + FS + +FE + +LE GL KI + F ++ + Sbjct: 527 EDVFGQTLDGFSLQLLELRQVFEAAVQFQQLEKLEVGGLRGKILTERVREIFGEFKVLFE 586 Query: 149 TVPDRVM 155 + + Sbjct: 587 QWSNVDI 593 >gi|170078731|ref|YP_001735369.1| DNA methyltransferase [Synechococcus sp. PCC 7002] gi|169886400|gb|ACB00114.1| DNA methyltransferase [Synechococcus sp. PCC 7002] Length = 917 Score = 40.7 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 52/207 (25%), Gaps = 47/207 (22%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIR------------TLYDPTC 214 + T + L D FK++ G DP C Sbjct: 300 QQTRRNLGAHYTSEKNIQKVIKPLFLDELHEKFKKAKGSPTALKRLHDELGELHFLDPAC 359 Query: 215 GTGGFLTDAMNH--------VADCGSHHKIPPILVPH---------GQELEPETHAVCVA 257 G G FL + + + + + G E + V Sbjct: 360 GCGNFLIISYRELRDLELLILKELYKKKEGFIDIRLFLKVDVDQFGGIEYDEFPARVAEV 419 Query: 258 GMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLF---TGKRFHYCLSNPPF 301 M + + + + + I G+ L D ++ +Y L NPPF Sbjct: 420 AMWLIDHQMNIKVSNEFGQYFVRLPLKKAARIVNGNALRIDWEEVIPKEKLNYILGNPPF 479 Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGL 328 + + + G G+ Sbjct: 480 -VGSKMMTKDQRADLLSVFESAKGAGV 505 >gi|315227037|ref|ZP_07868824.1| helicase [Parascardovia denticolens DSM 10105] gi|315119487|gb|EFT82620.1| helicase [Parascardovia denticolens DSM 10105] Length = 1673 Score = 40.7 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 33/265 (12%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMI 206 D+ ++ ++Y + S+ TP +V + F Sbjct: 891 DSNRQELIKDLYNDFFSKAFKATSQKLGIVYTPMQIVDYMLHVTDRVLKREFGCGLAEEG 950 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGM-LIRRL 264 + DP GTG ++ + ++ + H E+ + + V + Sbjct: 951 VHILDPFAGTGSYMAELISDPELIPVDKLEHKYKYELHSNEILLLAYYIMVVNIEYAYHA 1010 Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKW 305 D + T +D + F H + NPP+ Sbjct: 1011 RMDGAYEPFTGAVLTDTFQMSEDEDTLDDRMFIGNSERVTEQQRAPIHVIIGNPPYSAGQ 1070 Query: 306 EKDKDAVEKEHKNGELGR----FGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIV 359 + D EH R + + ++ S++ ++ + N G V Sbjct: 1071 KSANDNNANEHYPRLENRIRETYSDSVKTVNKNSLMDSYIEAFRWASDRIQNEGVVC-FV 1129 Query: 360 LSSSPLFNGRAGSGESEIRRWLLEN 384 ++ L AG+G +RR +E Sbjct: 1130 SNAGWL-RSEAGAG---VRRCFVEE 1150 >gi|75907549|ref|YP_321845.1| hypothetical protein Ava_1326 [Anabaena variabilis ATCC 29413] gi|75701274|gb|ABA20950.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 1321 Score = 40.7 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 43/196 (21%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAM 224 E + TPR + L P E P + + D G+G FL +A Sbjct: 529 EERRRSGTHYTPRALTEPIVKETLRPVLEALGERPTPEQILALKVCDLAVGSGAFLVEAC 588 Query: 225 NHVADCGSHH---------------------KIPPILVPHGQELEPETHAVCVAGMLIRR 263 +A+ ++ +G + P + + + Sbjct: 589 RQLAEKLVEAWNQHGMISEVPSDEEPLLYGRRLVAQRCLYGVDKNPFAVNLAKLSLWLVT 648 Query: 264 L-ESDPRRDLSKNIQQGSTL-----------------SKDLFTGKRFHYCLSNPPFGKKW 305 L + P L ++ G +L + D F+ L+ F + Sbjct: 649 LAKKHPFTFLDHALKCGDSLVGLTRDQLVKFNWEKDTTYDDKELLLFNEQLNKVKFNRDE 708 Query: 306 EKDKDAVEKEHKNGEL 321 + D + K Sbjct: 709 IQSLDDENYDAKRDFY 724 >gi|294787394|ref|ZP_06752647.1| putative Helicase [Parascardovia denticolens F0305] gi|294484750|gb|EFG32385.1| putative Helicase [Parascardovia denticolens F0305] Length = 1669 Score = 40.7 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 33/265 (12%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMI 206 D+ ++ ++Y + S+ TP +V + F Sbjct: 887 DSNRQELIKDLYNDFFSKAFKATSQKLGIVYTPMQIVDYMLHVTDRVLKREFGCGLAEEG 946 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGM-LIRRL 264 + DP GTG ++ + ++ + H E+ + + V + Sbjct: 947 VHILDPFAGTGSYMAELISDPELIPVDKLEHKYKYELHSNEILLLAYYIMVVNIEYAYHA 1006 Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKW 305 D + T +D + F H + NPP+ Sbjct: 1007 RMDGAYEPFTGAVLTDTFQMSEDEDTLDDRMFIGNSERVTEQQRAPIHVIIGNPPYSAGQ 1066 Query: 306 EKDKDAVEKEHKNGELGR----FGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIV 359 + D EH R + + ++ S++ ++ + N G V Sbjct: 1067 KSANDNNANEHYPRLENRIRETYSDSVKTVNKNSLMDSYIEAFRWASDRIQNEGVVC-FV 1125 Query: 360 LSSSPLFNGRAGSGESEIRRWLLEN 384 ++ L AG+G +RR +E Sbjct: 1126 SNAGWL-RSEAGAG---VRRCFVEE 1146 >gi|207108686|ref|ZP_03242848.1| type II adenine specific methyltransferase [Helicobacter pylori HPKX_438_CA4C1] Length = 296 Score = 40.7 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTFPKDFDASQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 R++ D NI Q T +F +NPP+GKK+ +++ K+ N Sbjct: 177 RIKERYHLDC-PNIAQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKETFKQKFN---- 229 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|300813170|ref|ZP_07093545.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495854|gb|EFK31001.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 503 Score = 40.7 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 48/194 (24%), Gaps = 46/194 (23%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIR------------TLYDPT 213 + T + L D F+ + G + DP Sbjct: 294 SEDKRSHLGMHYTSVPNIMKVIKPLFLDDLREEFENAKGNVDRLNELYARIGKIKFMDPA 353 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELEPETHAVCVAGM 259 CG+G FL + +G E+E V + Sbjct: 354 CGSGNFLIITYKELRQLEIDILKELNNMGTSTMYVPSVTLDQFYGIEIEDFACDVTRLSL 413 Query: 260 LI--RRLESDPRRD------------LSKNIQQGSTLSKDL-----FTGKRFHYCLSNPP 300 I ++ ++ + +I G+ L D K Y NPP Sbjct: 414 WIAEHQMNVKLHQEIKDAVRPTLPLKKAGDIVCGNALRLDWSKILPHEEKDEVYLFGNPP 473 Query: 301 FGKKWEKDKDAVEK 314 + +DK E Sbjct: 474 YLGSSLQDKKQKED 487 >gi|323143207|ref|ZP_08077902.1| hypothetical protein HMPREF9444_00516 [Succinatimonas hippei YIT 12066] gi|322417023|gb|EFY07662.1| hypothetical protein HMPREF9444_00516 [Succinatimonas hippei YIT 12066] Length = 590 Score = 40.7 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 31/138 (22%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS---------------HHKIPPILVPHGQELEPETH 252 DP CG G FL + + + I +G E+E Sbjct: 33 KFLDPACGCGNFLIVSYRELRRLENKILEQVFTDGFLNISDAIKVNINQFYGIEIEDWPA 92 Query: 253 AVCVAGMLI--RRLESDPR-----------RDLSKNIQQGSTLSKDLFT---GKRFHYCL 296 + M + + + S I+ + L+ D K Y L Sbjct: 93 EIAHLSMWLMEHVMNQETALKFGQTIPSIPLKSSATIKPWNALTIDWNEVIKAKECDYIL 152 Query: 297 SNPPFGKKWEKDKDAVEK 314 NPPFG ++ + Sbjct: 153 GNPPFGGTTYTTEEQKKW 170 >gi|299145511|ref|ZP_07038579.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|298516002|gb|EFI39883.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] Length = 927 Score = 40.7 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 111/337 (32%), Gaps = 46/337 (13%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + A F TP + L T L +D D + DP CGTG + A + Sbjct: 331 AYAKRKVAGQFATPPQLADLLTRLTIDKKDGIT----------LDPCCGTGTIIKQAYS- 379 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGM--------LIRRLESDPRRDLSKN-IQ 277 + + + I + + + ++ SD + I Sbjct: 380 LKEEYEIGQEQIIESIWASDKHSFPIQLSTLTLSNPGNIGKVLHIFRSDVIELHAGQTIV 439 Query: 278 QGSTLSKDLFTGK--RFHYCLSNPPFG--KKWEKDKDAVEKEHKN-GELGRFGPGLPKIS 332 + + + + Y +SN PF K+ +K +++ +K E + L K S Sbjct: 440 FKDPNNGNQVEKQLPKVDYIISNLPFIREKEIKKLNPNIKEINKLIKEQTKAKKTLSKKS 499 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-IV 391 D +F ++ L + G+ ++LS++ L I+++ I+ ++ Sbjct: 500 D---IF-AYIPFYLYDIISDNGKIGLILSNAWLGTDYGEIFLELIQKYF----NIDCVVI 551 Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 + F + T L I + R E V L T + Sbjct: 552 SGKGRWFNNAKVVTTLLIATKR---EISDPVNLDRRISFCTLKEKL---------ENIAD 599 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488 I + K S ++ +++ IK L + + + Sbjct: 600 IKKLSSEIILNKESDWVNIQSYSINEIKQLENIGIPW 636 >gi|27375976|ref|NP_767505.1| hypothetical protein blr0865 [Bradyrhizobium japonicum USDA 110] gi|27349115|dbj|BAC46130.1| blr0865 [Bradyrhizobium japonicum USDA 110] Length = 1301 Score = 40.7 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 27/142 (19%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA 223 ++ TPR + L P + + + DP G+G FL +A Sbjct: 530 TDERRRTGSHYTPRSLTGPIVRYALQPALEQLGANATPEQILDLKVCDPAMGSGAFLVEA 589 Query: 224 MNHVA----------------------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 +A + ++ +G + P + + + Sbjct: 590 CRALAAKLVVAWAHWPERKPIIPADEDEELHARRLVAQRCLYGVDKNPLATDLAKLSLWL 649 Query: 262 RRLESDPRRDLSKN-IQQGSTL 282 L D + ++ G +L Sbjct: 650 ATLARDHEFTFLDHALKSGDSL 671 >gi|330996127|ref|ZP_08320019.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573839|gb|EGG55424.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] Length = 864 Score = 40.7 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ + H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFVGSVLRH--------S 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + ++ GR + K G Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQKAIHNYFFLKGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQADLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SNR--KTEERRGKVQLI 425 K E + + Sbjct: 295 QKNLSKKEMSHDERLMT 311 >gi|217033035|ref|ZP_03438504.1| hypothetical protein HPB128_193g2 [Helicobacter pylori B128] gi|298736598|ref|YP_003729124.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8] gi|216945234|gb|EEC23916.1| hypothetical protein HPB128_193g2 [Helicobacter pylori B128] gi|298355788|emb|CBI66660.1| site-specific DNA-methyltransferase (adenine-specific) [Helicobacter pylori B8] Length = 814 Score = 40.7 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +++ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LQILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 R++ D NI Q T +F +NPP+GKK+ +++ K Sbjct: 177 RIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQ-------KENFKQ 226 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 RF L + D + LF + N L+ + G Sbjct: 227 RFN--LSQSLDSASLFFIASLNYLKENAHLG 255 >gi|197313568|ref|YP_002149612.1| putative methylase/helicase [Rhodococcus equi] gi|197092610|emb|CAQ30352.1| putative methylase/helicase [Rhodococcus equi] Length = 2949 Score = 40.7 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191 + + F D L+ F T +V + Sbjct: 1044 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVGELWRAV 1101 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 + L +P CG G F+ A P + G E+EP + Sbjct: 1102 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1141 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + S+ I+ + T F + N PF Sbjct: 1142 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1178 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 GR+ P P + + K GG A+V S F A Sbjct: 1179 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1225 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 G+ R + + V LPT F T + T + + R+ + + + Sbjct: 1226 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1276 >gi|197313499|ref|YP_002149544.1| putative methylase/helicase [Rhodococcus equi] gi|197092541|emb|CAQ30280.1| putative methylase/helicase [Rhodococcus equi] Length = 2949 Score = 40.7 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191 + + F D L+ F T +V + Sbjct: 1044 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVGELWRAV 1101 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 + L +P CG G F+ A P + G E+EP + Sbjct: 1102 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1141 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + S+ I+ + T F + N PF Sbjct: 1142 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1178 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 GR+ P P + + K GG A+V S F A Sbjct: 1179 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1225 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 G+ R + + V LPT F T + T + + R+ + + + Sbjct: 1226 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1276 >gi|10956643|ref|NP_066779.1| putative methylase [Rhodococcus equi] gi|31983873|ref|NP_858481.1| hypothetical protein pREAT701_27 [Rhodococcus equi] gi|10657890|gb|AAG21729.1| putative methylase [Rhodococcus equi] gi|10801081|dbj|BAB16635.1| Putative methylase (or helicase) [Rhodococcus equi] Length = 3229 Score = 40.7 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%) Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191 + + F D L+ F T +V + Sbjct: 1324 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVGELWRAV 1381 Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251 + L +P CG G F+ A P + G E+EP + Sbjct: 1382 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1421 Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 + S+ I+ + T F + N PF Sbjct: 1422 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1458 Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371 GR+ P P + + K GG A+V S F A Sbjct: 1459 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1505 Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 G+ R + + V LPT F T + T + + R+ + + + Sbjct: 1506 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1556 >gi|237718477|ref|ZP_04548958.1| methyltransferase-endonuclease [Bacteroides sp. 2_2_4] gi|229452184|gb|EEO57975.1| methyltransferase-endonuclease [Bacteroides sp. 2_2_4] Length = 518 Score = 40.7 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 23/167 (13%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +Y + + + F TP + + + D++ ++ DP Sbjct: 21 DRIGRLYTDTV---TAAFKKSNGQFFTPVSIAYFMGKQISVNKDSV---------SVLDP 68 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD- 271 CGT + ++ +I + + L P + + + I + + R D Sbjct: 69 GCGTAILSCAMIENLVLQSKVKQIELVTYETDENLIPGLQKI-LEYITIWGMRHNVRIDC 127 Query: 272 ---------LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + ++ T+ + +++ +SNPP+ K ++DK Sbjct: 128 RSYCEDFILSNYSVLYSDTIYGRADSLQKYDLIISNPPYFKLSKEDK 174 >gi|327395174|dbj|BAK12596.1| type I restriction-modification system methyltransferase subunit [defense mechanisms] [Pantoea ananatis AJ13355] Length = 235 Score = 40.7 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 52/171 (30%), Gaps = 10/171 (5%) Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 + + +AR +K +L + + + + + + IY L + E + Sbjct: 52 KYMAIVARYKKKDVLS-MARLLACVVNGLEEKICDFLGRIYMLL-----ELGDKDKEPYF 105 Query: 179 TPRDVVHLATALLLDPDDALFKE--SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 TP V + L +E T +P CG G + + G Sbjct: 106 TPWSVALMMAQLQFGAQLGKPEEVFRDKPFITFAEPACGAGAMTLAFASMLKQAGYSPHR 165 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 + +++P + + + + + + ++ L + Sbjct: 166 YLWVSVT--DIDPLAAGMAYIQLSLCDIPGEVVIGNALCDERRRVLLTPVH 214 >gi|269929250|ref|YP_003321571.1| hypothetical protein Sthe_3349 [Sphaerobacter thermophilus DSM 20745] gi|269788607|gb|ACZ40749.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM 20745] Length = 914 Score = 40.7 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 35/194 (18%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------------PHGQELEPETHAV 254 T+ DP CG+G FL A+ + + HG E H + Sbjct: 371 TILDPACGSGNFLYVALEQLKNLEKEVISYAAHRGLSMLLPQVTPRQLHGIETNAYAHEL 430 Query: 255 CV----------AGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGK----RFHYCLS 297 M ++ DP + + + S + + + Sbjct: 431 AQIVVWIGYIQWMTMNGFQVNRDPVLEPMDTVLLMDAILDRSDPAQPREPAWPDAEFIIG 490 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 NPPF ++ + + E+ + + +P+ + + + + RA Sbjct: 491 NPPF-LGGKRLRTELGDEYVDAMFAVYNGRVPR--EADLCCYWFEKARAMIAAGRVKRAG 547 Query: 358 IVLSSSPLFNGRAG 371 ++ ++S G A Sbjct: 548 LLATNSI--RGGAN 559 >gi|228911340|ref|ZP_04075143.1| hypothetical protein bthur0013_54770 [Bacillus thuringiensis IBL 200] gi|228848277|gb|EEM93128.1| hypothetical protein bthur0013_54770 [Bacillus thuringiensis IBL 200] Length = 289 Score = 40.7 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 159 YEHLI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 Y +I G G F TP + + T ++ D + +T+YDP G Sbjct: 159 YMSIILCEETGKGYKNGLGYFPTPFQLSIMMTHVVYKGIDNPATKDKYKGKTVYDPCVGC 218 Query: 217 GGFLTDAMNH 226 G A N+ Sbjct: 219 GSTFLPASNY 228 >gi|213021362|ref|ZP_03335809.1| hypothetical protein Salmonelentericaenterica_00661 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 216 Score = 40.7 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 14/133 (10%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + + ++E L + + F+TP D+ L T ++ + D Sbjct: 66 DIFNELFEDLF--LTGKKGDSFGQFLTPTDISELLTDIVYTTSKDK--------YKIADS 115 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---LEPETHAVCVAGMLIRRLESDPR 269 GTG + + + I + + + + + A + M+ L+ Sbjct: 116 CAGTGSLIFPLIKRIFFKEGFEGIQKVELFYNDKDSFVSQLFIAQILTNMIYHNLDFKSL 175 Query: 270 RDLSKN-IQQGST 281 N I + T Sbjct: 176 HVYIGNAITEYDT 188 >gi|257052780|ref|YP_003130613.1| restriction/modification enzyme [Halorhabdus utahensis DSM 12940] gi|256691543|gb|ACV11880.1| restriction/modification enzyme [Halorhabdus utahensis DSM 12940] Length = 1343 Score = 40.7 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 26/138 (18%) Query: 172 EGAEDFMT-PRDVVHLATALLLDPDDALFKESPGMIRT--------LYDPTCGTGGFLTD 222 + + T P V L + L + +++ + DP G+G FL Sbjct: 484 KETGSYYTKPELVDELIESALKPVVNDRLEDADTKEEKEEALLDIDVCDPAVGSGAFLIA 543 Query: 223 AMNHVADCGSHHKIP----------------PILVPHGQELEPETHAVCVAGMLIRR-LE 265 A N + + + +G +L P + + I +E Sbjct: 544 ANNFLGKRLAEIRSDSAYPDEETVRQARRSVVQHCLYGVDLNPMAVELAKVSLWINSAVE 603 Query: 266 SDPRRDLSKNIQQGSTLS 283 P L I+QG++L Sbjct: 604 DQPLSFLDHRIKQGNSLL 621 >gi|157952720|ref|YP_001497612.1| hypothetical protein NY2A_B416R [Paramecium bursaria Chlorella virus NY2A] gi|157953553|ref|YP_001498444.1| hypothetical protein AR158_C363R [Paramecium bursaria Chlorella virus AR158] gi|155122947|gb|ABT14815.1| hypothetical protein NY2A_B416R [Paramecium bursaria Chlorella virus NY2A] gi|156068201|gb|ABU43908.1| hypothetical protein AR158_C363R [Paramecium bursaria Chlorella virus AR158] Length = 372 Score = 40.7 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 38/140 (27%), Gaps = 35/140 (25%) Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 F TPR + + + R + DPTCG+G FL D Sbjct: 23 GIFFTPRSLRSIL-----------LSKITSRPRNILDPTCGSGEFLNDCFE--------- 62 Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294 P G E + V + I + +F Sbjct: 63 -KWPDSTLTGVEFTDDIVPVARDN------------VPNATIHHHDFMK--WKQDGKFDL 107 Query: 295 CLSNPPFGKKWEKDKDAVEK 314 + NPPF K + + K Sbjct: 108 IVGNPPFVKLTKSPNTHMYK 127 >gi|114705223|ref|ZP_01438131.1| hypothetical protein FP2506_09801 [Fulvimarina pelagi HTCC2506] gi|114540008|gb|EAU43128.1| hypothetical protein FP2506_09801 [Fulvimarina pelagi HTCC2506] Length = 639 Score = 40.7 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 47/185 (25%) Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD-VVHLATALLLDP 194 I + F V + + E R S TPR V L +++P Sbjct: 335 ITELFIAANRDWREVEPDIFGTLLE---RALNSRERSKLGAHYTPRAYVERLVVPTIIEP 391 Query: 195 DDALFKESPGMIRTLYD-------------------------PTCGTGGFLTDAMNHVAD 229 + + ++ L+D P CGTG FL A+ + Sbjct: 392 LRDDWDQVKAEVKDLHDQNKDAAAIAKVKAFHHTLCTTRVLDPACGTGNFLYVALELMKR 451 Query: 230 CGS------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 + +G E+ P A+ + I ++ + + Sbjct: 452 LEGEVLEALDELGEDAPRFAMEGETVGPRQFYGPEINPRAVAIADLVLWIGFIKWQLKTN 511 Query: 272 LSKNI 276 I Sbjct: 512 GLSAI 516 >gi|197294453|ref|YP_001798994.1| Putative N6 adenine-specific DNA methyltransferase, probably truncated [Candidatus Phytoplasma australiense] gi|171853780|emb|CAM11712.1| Putative N6 adenine-specific DNA methyltransferase, probably truncated [Candidatus Phytoplasma australiense] Length = 212 Score = 40.7 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 74/258 (28%), Gaps = 66/258 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP V +L + DP G G Sbjct: 1 MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRDL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G ++E T N+ Sbjct: 52 LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395 +L + IVL + F S S+ + L + I +I++LP Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPKISSIISLPK 178 Query: 396 DLFFRTNIATYLWILSNR 413 D+F + + I + Sbjct: 179 DVFENVVFHSEILIFNVN 196 >gi|159029908|emb|CAO90962.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 917 Score = 40.7 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 48/209 (22%), Gaps = 47/209 (22%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDP 212 + T + L D E R DP Sbjct: 298 MNPKERRNLGAHYTSEKNIQKVIKPLFLDDLHREFEKIKGNRNKLLEFQKKIANLYFLDP 357 Query: 213 TCGTGGFLTDAMNHVADCG-----------------SHHKIPPILVPHGQELEPETHAVC 255 CG G FL + D S + G E + V Sbjct: 358 ACGCGNFLIITYRELRDLEILVLQELDKTGQLVTDISAIIQVDVNQFAGIEYDEFAVRVA 417 Query: 256 VAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT---GKRFHYCLSNP 299 M + + + + S I G+ L D ++ ++ L NP Sbjct: 418 EVAMWLIDHQMNVKVSNTFGQYFVRLPLKKSAKIVHGNALRIDWEELISKEKLNFILGNP 477 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 PF + + G G G+ Sbjct: 478 PFVGAMIMNDEQRNDMA-YVFDGEKGIGV 505 >gi|138896326|ref|YP_001126779.1| adenine-specific methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|134267839|gb|ABO68034.1| Adenine-specific methyltransferase [Geobacillus thermodenitrificans NG80-2] Length = 307 Score = 40.7 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 45/330 (13%), Positives = 102/330 (30%), Gaps = 50/330 (15%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 +Y+ + ++ + +F ++ L A L K EL D + + ++ Sbjct: 4 TYLEAVAETGENLFHGDVLQDEVSEL-NAKRLKK-----QYRELMLDRFQNEEIRKAFQL 57 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + + MTP V L+ P + T+ DP GT LT Sbjct: 58 AVLKGMRQH-IQPHHQMTPDAVSLFLAYLV------RRFTRPHLALTILDPAVGTANLLT 110 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 +N ++ +G +++ + +++ + Sbjct: 111 AVLNGLSGKQVKS--------YGVDVDDLLVKLAYVNANLQKHSLQLFNQ--------DS 154 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L + + + P G + RF K +G Sbjct: 155 LRP--LFVEPADVIVCDLPVGYYP-----------DDDNASRFAL---KAEEGQSYAHHL 198 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L + GG ++ ++ + +A ++ ++L E +++ ++ LP +F Sbjct: 199 LIEQSLRYTKDGGYLFFLIPNTLFSSPQAE----QLNQFLKETAIVQGVLQLPLSMFKHE 254 Query: 402 NIATYLWILSNRKT-EERRGKVQLINATDL 430 A ++IL + + V L Sbjct: 255 QAAKSVFILQKKGPMAKPPKNVLLAELPRF 284 >gi|260824838|ref|XP_002607374.1| hypothetical protein BRAFLDRAFT_204971 [Branchiostoma floridae] gi|229292721|gb|EEN63384.1| hypothetical protein BRAFLDRAFT_204971 [Branchiostoma floridae] Length = 417 Score = 40.7 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 68/218 (31%), Gaps = 29/218 (13%) Query: 112 KAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRV-----MSNIYEHLIR 164 K I + DF R L+ A + + +++ P R + + LI Sbjct: 126 KDIIDALDFLPFQGRVDLKNAEHTFYVLEDYGDDPTKTPEEPYRTFFGRWIGDGQRKLID 185 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 ++ + + + + + + ++DP GTG L + Sbjct: 186 KYAVRKRQHIGETSMDAGLSFVMANM----------AATRRNTVVFDPFVGTGSLLVSSA 235 Query: 225 N---HVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 + +V H ++ E + A + LE L + + Sbjct: 236 HFGSYVLGTDIDSHIIHGWGRSTRHNKKWRGEDENI-RANLRQYGLEHLYLDVLVSDAAR 294 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 ++ + + F +++PP+G + + + + Sbjct: 295 --SVWRPC---QLFDAIVTDPPYGIREASQRLGTKDNN 327 >gi|315171700|gb|EFU15717.1| protein, SNF2 family [Enterococcus faecalis TX1342] Length = 2159 Score = 40.7 bits (94), Expect = 0.87, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 104/359 (28%), Gaps = 71/359 (19%) Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFD 119 + S + K G ++Y S S ++N+++ + A+ I + Sbjct: 533 SDEPSANEEIVIKKEVGSNYYLDSSVQYSNGKKVKFKDNIQAIRVLYQLEAEEIPLDH-- 590 Query: 120 FSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + +L K + + F + + + E+ S F Sbjct: 591 --TAQEQLAKYSGWGGLQEAFDDHNFSWQKEYQELKQLLTETEY-----EKARSSVLTAF 643 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 T ++V +L + +T+ DP GTG F + + Sbjct: 644 YTSSEIVQEMYQVL-------NQIGNFANKTILDPGMGTGNFFMNLPESLRSSKQ----- 691 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G E++P T + + I Q + + ++ ++ Sbjct: 692 -----IGVEIDPLTSRIAK------------QLLPEAQIYQM--GYEQVELPEKVDAVIT 732 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 N PF +DK + FL + L+ G Sbjct: 733 NIPFNDIRVRDKKYDRYNFSIHDY----------------FLAKSIDSLKE----NGILM 772 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 ++ S+S + + R +L + + V LP F T + + + + + Sbjct: 773 VITSASSMDKRN-----DKAREYLAKKANLVGAVRLPKTAFRQSAGTEVISDILLFQKK 826 >gi|256618605|ref|ZP_05475451.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256598132|gb|EEU17308.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] Length = 2159 Score = 40.7 bits (94), Expect = 0.87, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 104/359 (28%), Gaps = 71/359 (19%) Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFD 119 + S + K G ++Y S S ++N+++ + A+ I + Sbjct: 533 SDEPSANEEIVIKKEVGSNYYLDSSVQYSNGKKVKFKDNIQAIRVLYQLEAEEIPLDH-- 590 Query: 120 FSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177 + +L K + + F + + + E+ S F Sbjct: 591 --TAQEQLAKYSGWGGLQEAFDDHNFSWQKEYQELKQLLTETEY-----EKARSSVLTAF 643 Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 T ++V +L + +T+ DP GTG F + + Sbjct: 644 YTSSEIVQEMYQVL-------NQIGNFANKTILDPGMGTGNFFMNLPESLRSSKQ----- 691 Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297 G E++P T + + I Q + + ++ ++ Sbjct: 692 -----IGVEIDPLTSRIAK------------QLLPEAQIYQM--GYEQVELPEKVDAVIT 732 Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357 N PF +DK + FL + L+ G Sbjct: 733 NIPFNDIRVRDKKYDRYNFSIHDY----------------FLAKSIDSLKE----NGILM 772 Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 ++ S+S + + R +L + + V LP F T + + + + + Sbjct: 773 VITSASSMDKRN-----DKAREYLAKKANLVGAVRLPKTAFRQSAGTEVISDILLFQKK 826 >gi|229587546|ref|YP_002860584.1| superfamily II DNA and RNA helicase [Clostridium botulinum Ba4 str. 657] gi|229260318|gb|ACQ51355.1| superfamily II DNA and RNA helicase [Clostridium botulinum Ba4 str. 657] Length = 1306 Score = 40.7 bits (94), Expect = 0.87, Method: Composition-based stats. Identities = 57/399 (14%), Positives = 113/399 (28%), Gaps = 75/399 (18%) Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAIFEDFDFSSTIAR-- 126 KVA F+N + + + L S + +N AI + + Sbjct: 39 KVAQIDFFNLNPDITKNNKLKDEKFELKQIENNSILTRIKNNIIAIKLAKKLKQQVRKAD 98 Query: 127 LEKAGLLYK------ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + + L+ + + F + + + E+ + +S F T Sbjct: 99 MFEKDLISQYSGWGGLQDLFQQNKYIKEREKIEELLTEEEY-----RNALSSINTSFYTN 153 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 + ++ K+ + +P+CG G F+ + + I Sbjct: 154 KSIISFM--------HNALKKMGFKHGRVLEPSCGIGNFIGYMPQDIKSNSNIIGIEKE- 204 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRFHYCLSNP 299 L + L +N + +T F + N Sbjct: 205 ----------------------GLAASIAAQLYQNAEIQNTGFENARILDNYFDVVVGNV 242 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 PFG DK+ + ++ + K GG A++ Sbjct: 243 PFGNIKVHDKNY--------------------NKYALSIHNYFIVKSLDKVRPGGIVALI 282 Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419 SS + GS +++R + E + A + LP F TN IL +K E Sbjct: 283 TSSFTM-----GSKTNKVREIIGEKANLIAAIKLPNIAFGNTNTTVVSDILILQKKLENH 337 Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + L + I + ++I + + Sbjct: 338 NESNLSKWLQVNNEINEYFSNNPKMIAGNIKEISEPFGK 376 >gi|298485667|ref|ZP_07003746.1| Type II restriction enzyme, methylase subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159693|gb|EFI00735.1| Type II restriction enzyme, methylase subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 997 Score = 40.7 bits (94), Expect = 0.88, Method: Composition-based stats. Identities = 53/384 (13%), Positives = 94/384 (24%), Gaps = 96/384 (25%) Query: 119 DFSSTIARLEKAGLLYK----------------------ICKN--FSGIELHPDTVPDRV 154 DF S I +L+ + Y I + F + Sbjct: 262 DFKSLIQKLKNSDRKYNSGLFSLSYINTLINNADSCIWPIIEELYFPQSTYSFSVFSSEI 321 Query: 155 MSNIYEHLIR---RFGSEVSEGAE---------DFMTPRDVVHLATALLLDPDDALFKES 202 + NIYE + R + + TP +V + Sbjct: 322 LGNIYEVFLSERIRINVDGKIELQPKKDHIDRDVVTTPGHIVRDIIRNTAVEFCRNKTDK 381 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVAGMLI 261 + D CG+G FL + + D + I Q +CV ++ Sbjct: 382 QILNSKFADIACGSGAFLLELFQALQDILIDYYIVHDKSKLQQLTSHSFKLKLCVKKEIL 441 Query: 262 R----RLESDPRRDLS-----------------------------KNIQQGSTL------ 282 ++ D + NI G++L Sbjct: 442 TKCIYGIDKDFNAVKACSFGLLLKLLEGESKDTIELNTSILPKIDNNILFGNSLIDSNDN 501 Query: 283 --------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 RF + NPP+ + + K D Sbjct: 502 IKTTDAIAVNPFNIVHRFDVIIGNPPY---MATEHMKQLTPLELPIYKNKYKSAHKQFDK 558 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 LF+ L+ G +L S G +R+ L E + +++ Sbjct: 559 YFLFVERSMQLLKDE----GFLGYILPSKFTKVGAGQG----LRKLLTEQKYLSKLISFG 610 Query: 395 -TDLFFRTNIATYLWILSNRKTEE 417 + +F T L L + + Sbjct: 611 ASQVFKDKTTYTCLLFLKKSEQTK 634 >gi|225619640|ref|YP_002720897.1| adenine/cytosine DNA methyltransferase [Brachyspira hyodysenteriae WA1] gi|225214459|gb|ACN83193.1| adenine/cytosine DNA methyltransferase [Brachyspira hyodysenteriae WA1] Length = 812 Score = 40.7 bits (94), Expect = 0.88, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 32/230 (13%) Query: 84 SEYSL--STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141 S+ +L L N+ I + IFE+ + I L K L K Sbjct: 334 SKLTLSEKELFLKQNELNIRKCIGEAVPSI--IFEEIS-KNIIFELNKKCLDKKDINEIL 390 Query: 142 GIELHPDTVPDRVMSNIYEHLIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 + + ++ +++ + F TP+ V L Sbjct: 391 NNDYISFIKDNYEK-LCFDDIVKVVELSKSDRKLNASFFTPQYVCFDMI-------KDLP 442 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + S + + +P+CG G FL + G++LE + + + + Sbjct: 443 EFSNKDVIRILEPSCGIGSFLPQLIK---------------KYQGKKLEIDCIDIDIENI 487 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 I + +++ N L DL K++ + NPPFG + K Sbjct: 488 SIAKNIFFNDNNITFNFINADFLLCDL--DKKYDIVVGNPPFGNIIKDKK 535 >gi|269961079|ref|ZP_06175448.1| hypothetical protein VME_18320 [Vibrio harveyi 1DA3] gi|269834298|gb|EEZ88388.1| hypothetical protein VME_18320 [Vibrio harveyi 1DA3] Length = 894 Score = 40.7 bits (94), Expect = 0.88, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 57/231 (24%) Query: 118 FDFSSTIARLEKAGLLYKI---CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F+ I L K G I +++S I + ++++ +I + Sbjct: 253 FESDEPIPELGKKGRRILIECGLEDWSAINP-------DIFGSMFQAVID---VDQRARL 302 Query: 175 EDFMTP-RDVVHLATALLLDPDDALFKESPGMI------------RTLYDPTCGTGGFLT 221 T +++ + L LDP A ++ + ++DP CG+G FL Sbjct: 303 GQHYTSYSNIMKVIQPLFLDPLRAELEKQRNSVNGLKRLLVRLGEIKVFDPACGSGNFLI 362 Query: 222 DAMNHVADCGSH-------------HKIPPILVPHGQELEPETHAVCVAGMLI--RRLES 266 A + + +G E++ + + + ++ Sbjct: 363 IAYKELRLLEIEVIQALMKIDQGFFISNIHLDQFYGIEIDDFACEIARLSLWLAEHQINK 422 Query: 267 DPRRDLSK-----------NIQQGSTLSKDLFT-----GKRFHYCLSNPPF 301 + I G++L ++ Y + NPPF Sbjct: 423 QWEEHIGPAEDPLPLKATGKIVSGNSLHENWKEVCPKADSDEVYVIGNPPF 473 >gi|315303359|ref|ZP_07873978.1| adenine-specific methyltransferase [Listeria ivanovii FSL F6-596] gi|313628274|gb|EFR96788.1| adenine-specific methyltransferase [Listeria ivanovii FSL F6-596] Length = 219 Score = 40.7 bits (94), Expect = 0.89, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 34/224 (15%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267 ++ DP CGT LT +N + K + G +++ ++ + + Sbjct: 4 SILDPACGTANLLTTVINQL-----ELKEGMEIHASGVDVDDLLISLA-----LVGADLQ 53 Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 ++ + L+ L F + D++A E E F Sbjct: 54 RQKMT---LLHQDGLANLLVDPVDVVVSDLPVGF---YPDDENAKSFELCREEGHSF--- 104 Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 LF+ + GG ++ + + +++ +N I Sbjct: 105 ------AHFLFMEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHI 150 Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430 E I+ LP LF + IL + +V L N + L Sbjct: 151 EGIIKLPETLFKSEQARKSILILRKAAENVKPPKEVLLANLSSL 194 >gi|118580703|ref|YP_901953.1| type II restriction enzyme [Pelobacter propionicus DSM 2379] gi|118503413|gb|ABK99895.1| type II restriction enzyme [Pelobacter propionicus DSM 2379] Length = 1160 Score = 40.7 bits (94), Expect = 0.89, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 80/294 (27%), Gaps = 31/294 (10%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASF 107 + V E L + + + T + + +NL + Sbjct: 130 DKQKVVELKLDGSKDAELYRLLLVAQCNALHTTMPFLFEKIEDETELLLPDNLLHSDSLI 189 Query: 108 SDNAKAIFED----FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 I E+ + + + + ++ E P + I +++ Sbjct: 190 RKLVTEIEEEDWQEVEIIGWLYQFYISEKKDQVIGKVVKSEDIPAATQLFTPNWIVKYMA 249 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES---------PGMIRTLYDPTC 214 + S + + + + K TL DP C Sbjct: 250 Q--NSLGRKWLATYPNSPLKAKMEYYIEPAEQTDDVKAQLAAITPDSLDPETLTLLDPAC 307 Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLES 266 G+G L +A + + +G +++ + +L++ + Sbjct: 308 GSGHILVEAYDVFKEIYLERGYSNRDFPRLILEKNLYGLDIDDRAAQMAGFALLMKARKD 367 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 D R S N + + ++ + + N FG + V KNG+ Sbjct: 368 DRRILRSDNPVKLNVMA----IQESGDIAIDNSVFG-EHANALRDVVDLFKNGK 416 >gi|196249948|ref|ZP_03148643.1| N-6 DNA methylase [Geobacillus sp. G11MC16] gi|196210462|gb|EDY05226.1| N-6 DNA methylase [Geobacillus sp. G11MC16] Length = 329 Score = 40.7 bits (94), Expect = 0.90, Method: Composition-based stats. Identities = 45/330 (13%), Positives = 102/330 (30%), Gaps = 50/330 (15%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 +Y+ + ++ + +F ++ L A L K EL D + + ++ Sbjct: 26 TYLEAVAETGENLFHGDVLQDEVSEL-NAKRLKK-----QYRELMLDRFQNEEIRKAFQL 79 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + + + MTP V L+ P + T+ DP GT LT Sbjct: 80 AVLKGMRQH-IQPHHQMTPDAVSLFLAYLV------RRFTRPHLALTILDPAVGTANLLT 132 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 +N ++ +G +++ + +++ + Sbjct: 133 AVLNGLSGKQVKS--------YGVDVDDLLVKLAYVNANLQKHSLQLFNQ--------DS 176 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L + + + P G + RF K +G Sbjct: 177 LRP--LFVEPADVIVCDLPVGYYP-----------DDDNASRFAL---KAEEGQSYAHHL 220 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 L + GG ++ ++ + +A ++ ++L E +++ ++ LP +F Sbjct: 221 LIEQSLRYTKDGGYLFFLIPNTLFSSPQAE----QLNQFLKETAIVQGVLQLPLSMFKHE 276 Query: 402 NIATYLWILSNRKT-EERRGKVQLINATDL 430 A ++IL + + V L Sbjct: 277 QAAKSVFILQKKGPMAKPPKNVLLAELPRF 306 >gi|154498723|ref|ZP_02037101.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC 29799] gi|150272263|gb|EDM99461.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC 29799] Length = 2062 Score = 40.7 bits (94), Expect = 0.90, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 67/265 (25%), Gaps = 68/265 (25%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + T V+ + + +P+CG G F Sbjct: 506 EEYAAARGSTLNAHYTSPTVIRAIYEAVG--------RMGFETGNILEPSCGVGNFFGML 557 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQ 278 + +G EL+ + + A + + E+ RRD Sbjct: 558 PEEMR----------NSRLYGVELDSISGRIAQQLYPKADITVAGFETTDRRDF------ 601 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + + N PFG+ +DK + Sbjct: 602 -------------YDLAIGNVPFGQYQVRDKAYDKLNFSIHNY----------------- 631 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 K GG A V + +S +RR+L + + + LP D F Sbjct: 632 ---FFAKALDQVRPGGVVAFVT-----SRYTMDAKDSSVRRYLAQRAELLGAIRLPNDAF 683 Query: 399 -FRTNIATYLWILSNRKTEERRGKV 422 I+ +K + V Sbjct: 684 KKNAGAEVVSDIIFLQKRDRPLDIV 708 >gi|300932921|ref|ZP_07148177.1| hypothetical protein CresD4_02576 [Corynebacterium resistens DSM 45100] Length = 905 Score = 40.7 bits (94), Expect = 0.91, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 77/297 (25%), Gaps = 65/297 (21%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-----MSNIYEH 161 FS A+ + + I + + + + + I Sbjct: 261 FSSKAREML--IELGRQIWLDINPDIFGSMFQAIVTPGKRSNLGQHYTSVPNILKTIEPL 318 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + E F P+ + L + ++DP CG+G FL Sbjct: 319 FLDELKEEF---EAVFDDPKKLERLLDRI--------------ARIKVFDPACGSGNFLV 361 Query: 222 DAMNHVADCGSHHKIPPIL----------------VPHGQELEPETHAVCVAGMLIRRLE 265 A + +G E++ V + + I + + Sbjct: 362 IAYKELRRLEHAILQRQTDLGTNDVLFNESRISIENFYGIEIDDFAVEVAILSLWIAKHQ 421 Query: 266 SDPRRDLSKN-------------IQQGSTLSKDLFT-----GKRFHYCLSNPPFGKKWEK 307 + I+ G+ D G Y + NPP+G ++ Sbjct: 422 MNREFQEQFGISIPLIPLKEAGRIRAGNAARIDWNEVCPNNGMDEIYLIGNPPYGGSKKQ 481 Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 E K FG P + + L + + G + A V ++S Sbjct: 482 -----STEQKEDYAFVFGDR-PYNKNLDYIALWFIKGS-DYIAGTGAKLAFVSTNSV 531 >gi|157952534|ref|YP_001497426.1| hypothetical protein NY2A_B230L [Paramecium bursaria Chlorella virus NY2A] gi|2454656|gb|AAC03125.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus NY2A] gi|155122761|gb|ABT14629.1| hypothetical protein NY2A_B230L [Paramecium bursaria Chlorella virus NY2A] Length = 382 Score = 40.7 bits (94), Expect = 0.91, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 80/268 (29%), Gaps = 68/268 (25%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 ++ + F TP+D+ ++ + D + P + +PTCGTG F+ D Sbjct: 13 KQLSKQERSTGGVFFTPKDIR----DIIFEELDRISDFEPK---NILEPTCGTGEFIDDC 65 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++ G E++P + + D I ++ Sbjct: 66 R----------RVYGNAHILGVEIDPRSAELAR-------------DDSKNEIIVHDFIT 102 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 T ++F + NPPF + + + S + + + Sbjct: 103 --WNTTEKFDLIIGNPPFFTRPSGFRHDPNV----------------VKCRSNICIEVVH 144 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNG--------RAGSGESEIRRWLLENDLIEAIVALPT 395 + G A+VL S L + + + R + +N+ Sbjct: 145 KCMTGHLAENGILAMVLPMSLLNSKFYTPTVDRITTTMDVMFVREIKKNN---------- 194 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQ 423 F TN+ ++I+ + Sbjct: 195 --FMGTNVRVMVFIIRKCPPRVDNTYIF 220 >gi|322510791|gb|ADX06105.1| putative type I restriction modification N-terminal methyltransferase domain protein [Organic Lake phycodnavirus 1] Length = 201 Score = 40.7 bits (94), Expect = 0.92, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 16/158 (10%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNT 96 +L+ LE R ++Y + ++ + ++ L+ N Sbjct: 47 LLILKLLETHF--GREINIDEYE--YDFTHIEDEMIEKHKHKLLEIVRFTHLANEKEDNI 102 Query: 97 RNN---LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153 N L I S K IF ++ K+ + ++ Sbjct: 103 PVNMKYLWDDILSNHPTTKNIF----LKGKGFDIQHKSTYKKLIDKLNSLDKTHTECD-- 156 Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 V+ N YE +I+ + F T V + L+ Sbjct: 157 VLGNAYEEVIQDIM--TGKVLGQFFTQPLVKKMMVTLI 192 >gi|291166691|gb|EFE28737.1| superfamily II DNA and RNA helicase [Filifactor alocis ATCC 35896] Length = 2944 Score = 40.7 bits (94), Expect = 0.92, Method: Composition-based stats. Identities = 58/398 (14%), Positives = 117/398 (29%), Gaps = 76/398 (19%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101 RLE LE + K +ID ++ +K+ ++F T E L + L Sbjct: 1083 RLESDLERIFENLTYKKAKDTIQDIDEKAEKLKIEAHNFKITEEILPEKLTPS---ERLN 1139 Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTV--PDRVM 155 + + S + + +T + + L ++ + + + Sbjct: 1140 QNLEAISMLKRVESGQRELDNTAQEVLAKYVGWGGLSEVFDESREGQWKEARAFLKENLS 1199 Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 S+ YE + F TP+ V+ + + +P+ G Sbjct: 1200 SSEYE-------AAKESTLTAFYTPKTVIDSIYS--------TLSGMGFKNGNILEPSMG 1244 Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 G F+ + ++ +G EL+ + + + Sbjct: 1245 IGNFIGSLPDEMSSSK----------FYGVELDSLSGRIGKL----------LYPESDIQ 1284 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 I+ L + F+ F + N PFG+ D++ + + Sbjct: 1285 IKG---LEETSFSNNFFDAVIGNVPFGEYKVNDREYNKNNFLIHDY-------------- 1327 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 K GG A + +G + +RR+L + LP Sbjct: 1328 ------FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPN 1376 Query: 396 DLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430 D F T + + + L R + R + + A D Sbjct: 1377 DTFKGVAGTEVTSDIIFLKKRDSIRERDEDWIHLAEDE 1414 >gi|38640380|ref|NP_944303.1| Bcep22gp75 [Burkholderia phage Bcep22] gi|33860447|gb|AAQ55007.1| Bcep22gp75 [Burkholderia phage Bcep22] Length = 4602 Score = 40.7 bits (94), Expect = 0.92, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 62/253 (24%), Gaps = 57/253 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 ++ T V+ + + +P G G F Sbjct: 1655 EQYEQAKRTTQYAHYTSEGVIRSIY--------DGLRRLGFAGGKVLEPGMGIGLFKGLM 1706 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +A G E + T A+ NI G + Sbjct: 1707 PDSMAA---------TSQYTGVEYDALTGAIAK------------LLYPQSNIIVGD-FT 1744 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K + F + NPPF + +K+ F + ++ Sbjct: 1745 KTAMPREFFDAAIGNPPFASVVVTNDPEYKKQGFMLHDYFFAKTIDRVK----------- 1793 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 GG V S + RR+L + + + LP F Sbjct: 1794 --------PGGMLVFVTSKGTM-----DKASDRARRYLADRANLIGAMRLPQTAFKDNAG 1840 Query: 401 TNIATYLWILSNR 413 T + T + L R Sbjct: 1841 TEVVTDVLFLQKR 1853 >gi|327314036|ref|YP_004329473.1| Eco57I restriction endonuclease [Prevotella denticola F0289] gi|326945481|gb|AEA21366.1| Eco57I restriction endonuclease [Prevotella denticola F0289] Length = 1103 Score = 40.3 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 41/178 (23%) Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189 NF+ E P+ ++ ++E+L+ + E E + F TPR++V+ Sbjct: 388 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 447 Query: 190 --LLLDPDDALFKE--------------------SPGMIRTLYDPTCGTG----GFLTDA 223 + +D + + DP CG+G G L Sbjct: 448 SLMAYLGNDETVRSVFSRDFIYDKSKADEYKSIVERLKNVKVLDPACGSGAFPMGLLNKM 507 Query: 224 MNHVADCGSHHKIPP------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + I +G +++ + I + + + N Sbjct: 508 VEVIERISPEEDIYSLKLSIIEKCLYGSDIQSIAAQITKLRFFISLICDCVKDETKPN 565 >gi|241758976|ref|ZP_04757088.1| DNA-methyltransferase [Neisseria flavescens SK114] gi|241320797|gb|EER57030.1| DNA-methyltransferase [Neisseria flavescens SK114] Length = 937 Score = 40.3 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 32/123 (26%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------------PILVPHGQELEPET 251 DP CG G FL A + I HG E++ Sbjct: 366 QFLDPACGCGNFLVVAYRELRKLEDDIIGELFAEGQLLDISTMLQTHIGQFHGIEIDEYP 425 Query: 252 HAVCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDLFTGKRFHYCLSN 298 + M + + + R I ++L + + Y N Sbjct: 426 AQIAKVAMWLTDHQCNLRTAERFGQTRPSIPLTDSAEIINANSLHTEW---PQADYIFGN 482 Query: 299 PPF 301 PPF Sbjct: 483 PPF 485 >gi|254514667|ref|ZP_05126728.1| hypothetical protein NOR53_1987 [gamma proteobacterium NOR5-3] gi|219676910|gb|EED33275.1| hypothetical protein NOR53_1987 [gamma proteobacterium NOR5-3] Length = 918 Score = 40.3 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 74/274 (27%), Gaps = 73/274 (26%) Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT------ 208 +I+ +I+ + GA T ++ + LLLD +E+ G R Sbjct: 281 DIFGSMIQAVADDDERGALGMHYTSVPNILKVLNPLLLDDLREKLEEAGGNSRKLLNLRN 340 Query: 209 ------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETH 252 ++DP CG+G FL A + + G EL Sbjct: 341 RMSKIRVFDPACGSGNFLVIAYKEMRAIEAVINERREEAEQRSVIPLTNFRGIELRDFPA 400 Query: 253 AVCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDL------------- 286 + ++I + D + I G+ L D Sbjct: 401 EIARLALIIAEYQCDLLYRGQQEAVRDFLPLEAMNWITCGNALRLDWSSICPPTGEAVKL 460 Query: 287 FTGKRFH-----------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 F Y NPP+ + + + F P L Sbjct: 461 HGDDLFSTPLDQAEIDFENEGGETYVCGNPPYQGSVNQTPGQKDDMRRI-----FVPVLK 515 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + D + + G ++A V ++S Sbjct: 516 RYKDLDYI-AAFMLLAARFNATTGAKSAFVTTNS 548 >gi|29350035|ref|NP_813538.1| DNA modification methylase [Bacteroides thetaiotaomicron VPI-5482] gi|29341947|gb|AAO79732.1| DNA modification methylase [Bacteroides thetaiotaomicron VPI-5482] Length = 991 Score = 40.3 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%) Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 GLL + + NF+ E P+ V ++ I+E+L+ E ++ F TP+++V Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406 Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217 + D + E I + DP G+G Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466 Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 F + N V + + + +G ++E + + + Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526 Query: 266 SDPRRDLSKN----IQQGSTLSK 284 + + N I QG++L + Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549 >gi|237710844|ref|ZP_04541325.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454688|gb|EEO60409.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 1281 Score = 40.3 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 42/130 (32%), Gaps = 20/130 (15%) Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF +SN PFG D + R FL K Sbjct: 189 RFDLAISNIPFGDIAVFDPEYANGSVFKKIAARKVHT--------YFFL-----KGLDAV 235 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S L G + R + DL+ A + LP +LF T + L Sbjct: 236 RDGGIVAFITSQGVLNTESNGGTRYMMTR---KADLVSA-IRLPNNLFTEDANTEVGCDL 291 Query: 408 WILSNRKTEE 417 IL + +E Sbjct: 292 IILQKNEGKE 301 >gi|304440078|ref|ZP_07399970.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371445|gb|EFM25059.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 2076 Score = 40.3 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 59/256 (23%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TPR+V +D + + +P+ G G F+ + + Sbjct: 840 FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFIGSMPSEIQSSK----- 886 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G E + + + NI Q + F+ F + Sbjct: 887 -----VYGVEKDSLSGRIAR------------ELYPEANI-QIKGFEETNFSNNFFDLVI 928 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG D++ + K GG Sbjct: 929 GNVPFGDFKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGII 968 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +R+++ + LP +F T + + + L R Sbjct: 969 AFIT-----SSGTMDKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDIIFLKKR 1023 Query: 414 KTEERRGKVQLINATD 429 + R + ATD Sbjct: 1024 DSVIERDDDWIHLATD 1039 >gi|298385283|ref|ZP_06994842.1| DNA methylase [Bacteroides sp. 1_1_14] gi|298262427|gb|EFI05292.1| DNA methylase [Bacteroides sp. 1_1_14] Length = 1882 Score = 40.3 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 42/130 (32%), Gaps = 20/130 (15%) Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF +SN PFG D + R FL K Sbjct: 89 RFDLAISNIPFGDIAVFDPEYANGSVFKKIAARKVHT--------YFFL-----KGLDAV 135 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S L G + R + DL+ A + LP +LF T + L Sbjct: 136 RDGGIVAFITSQGVLNTESNGGTRYMMTR---KADLVSA-IRLPNNLFTEDANTEVGCDL 191 Query: 408 WILSNRKTEE 417 IL + +E Sbjct: 192 IILQKNEGKE 201 >gi|237725678|ref|ZP_04556159.1| DNA methylase BmhA [Bacteroides sp. D4] gi|317474062|ref|ZP_07933341.1| hypothetical protein HMPREF1016_00320 [Bacteroides eggerthii 1_2_48FAA] gi|229435486|gb|EEO45563.1| DNA methylase BmhA [Bacteroides dorei 5_1_36/D4] gi|316909904|gb|EFV31579.1| hypothetical protein HMPREF1016_00320 [Bacteroides eggerthii 1_2_48FAA] Length = 1974 Score = 40.3 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 42/130 (32%), Gaps = 20/130 (15%) Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 RF +SN PFG D + R FL K Sbjct: 181 RFDLAISNIPFGDIAVFDPEYANGSVFKKIAARKVHT--------YFFL-----KGLDAV 227 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407 GG A + S L G + R + DL+ A + LP +LF T + L Sbjct: 228 RDGGIVAFITSQGVLNTESNGGTRYMMTR---KADLVSA-IRLPNNLFTEDANTEVGCDL 283 Query: 408 WILSNRKTEE 417 IL + +E Sbjct: 284 IILQKNEGKE 293 >gi|170761675|ref|YP_001788746.1| putative site-specific DNA-methyltransferase restriction-modification protein [Clostridium botulinum A3 str. Loch Maree] gi|169408664|gb|ACA57075.1| putative site-specific DNA-methyltransferase restriction-modification protein [Clostridium botulinum A3 str. Loch Maree] Length = 472 Score = 40.3 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 94/286 (32%), Gaps = 49/286 (17%) Query: 176 DFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-TDAMNHVADC--- 230 TP D VV L + D + + + CG G L ++ D Sbjct: 6 QVFTPSDKVVELLDRVGYVKDL--------YGKKVIENACGNGNILKVIVDRYIRDSLSA 57 Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 K+ +G E++ E + C+ + + + D K I L + L Sbjct: 58 NIPIQSIKLGLESDIYGAEIDKEHYIKCIENLDLVANKYDIHNVSWK-ILNVDILKERLQ 116 Query: 288 TGKRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 +F Y + NPP+ + D + V++ ++ G+F D F+ Sbjct: 117 --GKFDYVIGNPPYITYRDLDNQTRKFVKENYEVCAKGKF--------DYCYAFIEASIK 166 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 L N G+ A ++ SS N A + ++L + + +F + Sbjct: 167 CL----NNNGKLAYLIPSSIFKNVFAQRLRDYMLKYLCKIYDYKT-----KRVFKNVVTS 217 Query: 405 TYLWILSNRK----------TEERRGKVQLINATDLWTSIRNEGKK 440 + + IL ++ K++ N T W R K Sbjct: 218 SAIIILDKGNESDEITYSDIAQKVSWKIKKFNLTGKWVFKRKVDNK 263 >gi|91204256|emb|CAJ71909.1| hypothetical protein kustc1164 [Candidatus Kuenenia stuttgartiensis] Length = 1013 Score = 40.3 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 31/175 (17%) Query: 35 ILPFTL--LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92 IL T L RL R V + ++ G K G+ Y + L Sbjct: 85 ILGLTFTHLNRLVALKLMERRKVIRETVSRGS---------KSNGFVHYVVDVLKKTDLS 135 Query: 93 S-TNTRNNLESYI----ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147 + + YI ++ K +F+ D SS + +A L + + + E+ Sbjct: 136 QLDDIDIAYQDYILYQCREVAEEIKVLFDQEDLSSYVFPRPRA--LKAVLEIINNPEIDN 193 Query: 148 DTVPDRVMSNIYEHL----IRRFGSEVSEGA---------EDFMTPRDVVHLATA 189 D + IY++ IR S F TPR VV T Sbjct: 194 IWDFDETIGWIYQYFTPKEIREQARAESSAPRNSWELAFRNQFYTPRYVVQFLTD 248 >gi|303235670|ref|ZP_07322277.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN] gi|302484117|gb|EFL47105.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN] Length = 1452 Score = 40.3 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 77/255 (30%), Gaps = 52/255 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHN 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ ++L T ++R L + + + F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPGKKTRTCGFEKIERPFNN------YFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + ++ GR + K GG Sbjct: 194 VSNIPFGDIAVFDPEFQ----RSDSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 242 VAFITSQGVL-----NSTKTSVRNELFSKADLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296 Query: 413 R--KTEERRGKVQLI 425 K E + + + Sbjct: 297 NLSKKEMSQDERLMT 311 >gi|208434400|ref|YP_002266066.1| type II adenine specific methyltransferase [Helicobacter pylori G27] gi|208432329|gb|ACI27200.1| type II adenine specific methyltransferase [Helicobacter pylori G27] Length = 545 Score = 40.3 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LEILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----K 176 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 R++ D NI Q T +F +NPP+GKK+ +++ + K Sbjct: 177 RIKERYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN- 229 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|307244223|ref|ZP_07526338.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678] gi|306492373|gb|EFM64411.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678] Length = 2909 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 71/249 (28%), Gaps = 59/249 (23%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+ V+ + +P+ G G F+ + + ++ Sbjct: 1178 AFYTPKTVIDSVYK--------TLAGMGFKSGNILEPSMGVGNFIGNLPDEMSKLK---- 1225 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G EL+ + + + I+ + F+ F Sbjct: 1226 ------FYGVELDSVSGRIGKL----------LYPESEVQIKG---FEETTFSNNFFDAV 1266 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + N PFG+ D++ + + K GG Sbjct: 1267 IGNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGV 1306 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412 A + +G + +RR+L + LP D+F T + + + L Sbjct: 1307 IAFIT-----SSGTMDKKDESVRRYLAARTEFLGAIRLPNDIFKGVAGTEVTSDIIFLKK 1361 Query: 413 RKTEERRGK 421 R + R + Sbjct: 1362 RDSIRERDE 1370 >gi|293371761|ref|ZP_06618171.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|292633213|gb|EFF51784.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] Length = 1944 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 85/257 (33%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PDADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + E + + FG + + + FL K G Sbjct: 192 LAVSNIPFG-----DIAVFDAEFERSDS--FGRRSAQKAIHNYFFL-----KGLDTVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S + +R L + + + LP +LF T + + L +L Sbjct: 240 GIVAFITSQGVL-----NSTKISVRNELFRQASLVSAIRLPNNLFTDNAGTEVGSDLIVL 294 Query: 411 SN--RKTEERRGKVQLI 425 KTE + + + Sbjct: 295 QKNLNKTEMSQDERLMT 311 >gi|238801686|ref|YP_002922742.1| gp70 [Burkholderia phage BcepIL02] gi|237688061|gb|ACR15063.1| gp70 [Burkholderia phage BcepIL02] Length = 4667 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 62/253 (24%), Gaps = 57/253 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 ++ T V+ + + +P G G F Sbjct: 1755 EQYEQAKRTTQYAHYTSEGVIRSIY--------DGLRRLGFAGGKVLEPGMGIGLFKGLM 1806 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +A G E + T A+ NI G + Sbjct: 1807 PDSMAA---------TSQYTGVEYDALTGAIAK------------LLYPQSNIIVGD-FT 1844 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 K + F + NPPF + +K+ F + ++ Sbjct: 1845 KTAMPREFFDAAIGNPPFASVVVTNDPEYKKQGFMLHDYFFAKTIDRVK----------- 1893 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 GG V S + RR+L + + + LP F Sbjct: 1894 --------PGGMLVFVTSKGTM-----DKASDRARRYLADRANLIGAMRLPQTAFKDNAG 1940 Query: 401 TNIATYLWILSNR 413 T + T + L R Sbjct: 1941 TEVVTDVLFLQKR 1953 >gi|262199721|ref|YP_003270930.1| hypothetical protein Hoch_6570 [Haliangium ochraceum DSM 14365] gi|262083068|gb|ACY19037.1| hypothetical protein Hoch_6570 [Haliangium ochraceum DSM 14365] Length = 926 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 27/182 (14%) Query: 153 RVMSNIYEHLIRR---------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 + + YEHL+ R + + + TP +V A LDP Sbjct: 211 DELGSAYEHLLARQPIFVGQAPDFLLRPAPEHARKRSGSYYTPAALVEELLAATLDPALE 270 Query: 198 LFKESPGMIR-----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 +P + DP CG G L A +A +H + Q Sbjct: 271 RAARAPDPAAAILALRVCDPACGAGNVLVAAARRMAARLAHARGRGDDPAARQLALRAIV 330 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH--YCLSNPPFGKKWEKDKD 310 A C I ++ DP I ++ RF N G + ++ Sbjct: 331 ARC-----IHGVDIDPMAAELCKISLWLAAAEPGTGPGRFDSRIQCGNAVLGATPAQMRE 385 Query: 311 AV 312 + Sbjct: 386 GI 387 >gi|145343474|gb|ABP65247.1| HP0478-like protein [Helicobacter pylori] Length = 538 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSCYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDVSQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q T +F +NPP+GKK+ +++ + K Sbjct: 181 RYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN----- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHWG 255 >gi|313633072|gb|EFR99978.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067] Length = 339 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 77/256 (30%), Gaps = 40/256 (15%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 MTP + + LL ++ DP CGT LT +N + K Sbjct: 98 HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 146 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + G +++ ++ + + ++ + L+ L Sbjct: 147 DGLEIHASGVDVDDLLISLA-----LVGADLQRQKMT---LLHQDGLANLLVDPVDVVVS 198 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 F + D++A E E F LF+ + Sbjct: 199 DLPIGF---YPDDENAKSFELCREEGHSF---------AHFLFIEQGMRYTKPGGYLFFL 246 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 + + F +++ +++ +N IE I+ LP LF + IL Sbjct: 247 VTDAMFGTSDF--------AKVDKFIKKNGHIEGIIKLPETLFKSEQARKSILILRKAAE 298 Query: 416 E-ERRGKVQLINATDL 430 + +V L N + L Sbjct: 299 NVKPPKEVLLANLSSL 314 >gi|157953403|ref|YP_001498294.1| hypothetical protein AR158_C212L [Paramecium bursaria Chlorella virus AR158] gi|156068051|gb|ABU43758.1| hypothetical protein AR158_C212L [Paramecium bursaria Chlorella virus AR158] Length = 382 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 80/268 (29%), Gaps = 68/268 (25%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 ++ + F TP+D+ ++ + D + P + +PTCGTG F+ D Sbjct: 13 KQLSKQERSTGGVFFTPKDIR----DIIFEELDRISDFEPK---NILEPTCGTGEFIDDC 65 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 ++ G E++P + + D I ++ Sbjct: 66 R----------RVYENAHILGVEIDPRSAELAR-------------DDSKNEIIVHDFIT 102 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 T ++F + NPPF + + + S + + + Sbjct: 103 --WNTTEKFDLIIGNPPFFTRPSGFRHDPNV----------------VKCRSNICIEVVH 144 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNG--------RAGSGESEIRRWLLENDLIEAIVALPT 395 + G A+VL S L + + + R + +N+ Sbjct: 145 KCMTGHLAENGILAMVLPMSLLNSKFYTPTVDRITTTMDVMFVREIKKNN---------- 194 Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQ 423 F TN+ ++I+ + Sbjct: 195 --FMGTNVRVMVFIIRKCPPRVDNTYIF 220 >gi|330997645|ref|ZP_08321490.1| hypothetical protein HMPREF9442_02590 [Paraprevotella xylaniphila YIT 11841] gi|329570173|gb|EGG51913.1| hypothetical protein HMPREF9442_02590 [Paraprevotella xylaniphila YIT 11841] Length = 1053 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%) Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 GLL + + NF+ E P+ V ++ I+E+L+ E ++ F TP+++V Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406 Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217 + D + E I + DP G+G Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466 Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 F + N V + + + +G ++E + + + Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526 Query: 266 SDPRRDLSKN----IQQGSTLSK 284 + + N I QG++L + Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549 >gi|261837885|gb|ACX97651.1| adenine methyltransferase [Helicobacter pylori 51] Length = 545 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 43/235 (18%) Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178 +L K L + + I + + + + + YE + + Sbjct: 58 NKLNKYANKSLKGVHNHQELILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYY 114 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L P D ++ DP G+G F+ A+ Sbjct: 115 TPNKIVE---QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALKL---------GFK 157 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G + + A+ +R++ D NI Q T +F +N Sbjct: 158 VKNIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTN 209 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+GKK+ +++ K RF L + D + LF + N L+ + G Sbjct: 210 PPWGKKYNQNQ-------KENFKQRFN--LSQSLDSTSLFFIASLNCLKENAHLG 255 >gi|298480706|ref|ZP_06998902.1| type IIS restriction endonuclease [Bacteroides sp. D22] gi|298273140|gb|EFI14705.1| type IIS restriction endonuclease [Bacteroides sp. D22] Length = 1053 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 53/203 (26%) Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 LL + + NF+ E P+ V ++ I+E+L+ E ++ F TP+++V Sbjct: 352 NSLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406 Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217 + D +L E I + DP G+G Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASLLGELKEYIDQKLCNVKICDPAIGSG 466 Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 F + N + + + + +G ++E + + + Sbjct: 467 AFPMGLLRELFFCRSAIEPNIIENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526 Query: 266 SDPRRDLSKN----IQQGSTLSK 284 + + N I QG++L + Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549 >gi|219871162|ref|YP_002475537.1| hypothetical protein HAPS_0963 [Haemophilus parasuis SH0165] gi|219691366|gb|ACL32589.1| hypothetical protein HAPS_0963 [Haemophilus parasuis SH0165] Length = 535 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 79/293 (26%), Gaps = 66/293 (22%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTR 97 +L RL + + + ++ D + + + Y TS + L + Sbjct: 6 VLFRLSESDKGQNQDIEKRRKKLSEIFSDNINNNEKEYLALYVLQTSYAIIVKLIACKVI 65 Query: 98 NNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK----------------------- 129 L SFS++ K +I + + +LE Sbjct: 66 QTL-----SFSEDVKFFSDLSIIDSIKLQRFMEKLEDGYVFSSGGIRNLLEGDFYSWYSD 120 Query: 130 ----AGLLYKICKNF-------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +Y KN S + + ++Y ++ E+ ++ Sbjct: 121 KNQWNPKIYNSIKNIIKELEFYSSSNFSYEFQTIDIFKDLYMEIMPN---EIRHSLGEYF 177 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HH 234 TP + + ++ DP CG+G FL + + D Sbjct: 178 TPSWMADHVVS-------RSLEKLNKESWKAIDPCCGSGVFLISLIKSILDKHELYSLTI 230 Query: 235 KIPPI------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K +G +L P + + + + + G + Sbjct: 231 KEKQELLLRILSSVYGIDLNPLSVLTARVSYFLAIRPLIDEQKIEIPVYLGDS 283 >gi|110669156|ref|YP_658967.1| type II restriction/modification enzyme [Haloquadratum walsbyi DSM 16790] gi|109626903|emb|CAJ53372.1| probable type II restriction/modification enzyme [Haloquadratum walsbyi DSM 16790] Length = 1351 Score = 40.3 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 26/137 (18%) Query: 172 EGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIR--------TLYDPTCGTGGFLTD 222 + + T +V L P + +++ ++ DP G+G FL Sbjct: 488 KETGSYYTDPGLVQELVQSALKPVVEDRLEDADTATEKEDALLDISVCDPASGSGAFLIA 547 Query: 223 AMNHV---------------ADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRR-LE 265 A N + D + + + +L P + + I +E Sbjct: 548 ANNFLGQRLARIRSGGNYPPEDQIREARRDVLQHCIYAVDLNPMAVELAKVSLWINSAVE 607 Query: 266 SDPRRDLSKNIQQGSTL 282 P L +I+ G++L Sbjct: 608 DKPLNFLDHHIKCGNSL 624 >gi|317011160|gb|ADU84907.1| hypothetical protein HPSA_04625 [Helicobacter pylori SouthAfrica7] Length = 2802 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 122/415 (29%), Gaps = 80/415 (19%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F S + + TP L + D L + + +++P+ GTG F+ Sbjct: 957 EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1008 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +H G EL+P + ++ + L N +T + Sbjct: 1009 -------AHAPSDKNYRFIGTELDP--------------ISANISQFLYPNQVIQNTALE 1047 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + + + + PP+G + E +++ FL Sbjct: 1048 NHHFYQEYDAFVGIPPYGNHKIYSSNDKELSNESVHNY---------------FLGKAIK 1092 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 +L+ G A V+ S F + R ++++N + LP +F T Sbjct: 1093 ELKDD----GIGAFVV--SSWFMDGKNP---KTREYIVQNATFLGAIRLPNSVFKATGTE 1143 Query: 405 TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452 + K GK+ I++ D T + + + +I Sbjct: 1144 VSSDIVFFKKGVDEAIHQSFTKAMPYYGKI--IDSLDDDTLFALQNNRFDSFIPSDQLKI 1201 Query: 453 LDI---YVSRENGKFSRML---DYRTFGY----RRIK---VLRPLRMSFILDKTGLARLE 499 ++ + + K R D FGY +I + R + L++ L Sbjct: 1202 VNAIASHFGFKQEKLQRWYEKIDTANFGYSEQDYKIIKDFMDRVGENNINLNEQTLNEYF 1261 Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554 + L L + +QIY Y K S K K Sbjct: 1262 INHPENILGHLSLEKTRYSFEINGEQIYKYELQALENKSLDLSQALSQAIEKLPK 1316 >gi|126651362|ref|ZP_01723569.1| hypothetical protein BB14905_12370 [Bacillus sp. B14905] gi|126591891|gb|EAZ85974.1| hypothetical protein BB14905_12370 [Bacillus sp. B14905] Length = 309 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 9/95 (9%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LF+ N + L+ S LF+ ++ +++ ++ I+AI+ LP Sbjct: 203 LFIEQSMNYTKEGGYL-----FFLAPSHLFDSEQS---KQLHKYIQKHAWIQAIIQLPDS 254 Query: 397 LFFRTNIATYLWILSNR-KTEERRGKVQLINATDL 430 +F ++ + IL + K + +V L ++ Sbjct: 255 MFANKSLEKSIVILQKQSKECKSPKEVLLAKVPNM 289 >gi|55822820|ref|YP_141261.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus CNRZ1066] gi|55738805|gb|AAV62446.1| type I restriction-modification system methyltransferase subunit, truncated [Streptococcus thermophilus CNRZ1066] Length = 147 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 10/106 (9%), Positives = 19/106 (17%), Gaps = 8/106 (7%) Query: 16 WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73 W G T + I + L V + + G + Sbjct: 2 WTLLNKTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYGQDPVRALDY 61 Query: 74 KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119 + + +T F F+ Sbjct: 62 MKQKLGYAIQPKEFFKDWEATIHEERFNI------PMISDTFGHFN 101 >gi|329940572|ref|ZP_08289853.1| hypothetical protein SGM_5345 [Streptomyces griseoaurantiacus M045] gi|329300633|gb|EGG44530.1| hypothetical protein SGM_5345 [Streptomyces griseoaurantiacus M045] Length = 1346 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 43/153 (28%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT------------------LYD 211 A TPR + L+P SPG +T + D Sbjct: 563 SRASAGAHYTPRSLAEEVVRYALEP----LVYSPGPHQTADQDAWRPIDSDQILDLRIAD 618 Query: 212 PTCGTGGFLTDAMNHVAD--------------------CGSHHKIPPILVPHGQELEPET 251 CG+G FL A ++AD + +G ++ Sbjct: 619 IACGSGAFLVAAARYLADRLVEAWQREGVAYGRTPHDLHVHAIRTVVATCLYGADINGMA 678 Query: 252 HAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283 +C + + L+ P + + G+ L Sbjct: 679 VEMCKLSLWLVSLDPKLPFSFVDDKVLHGNALL 711 >gi|317181797|dbj|BAJ59581.1| Type II adenine specific methyltransferase [Helicobacter pylori F57] Length = 545 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 43/235 (18%) Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178 +L K L + + I + + + + + YE + + Sbjct: 58 NKLNKYANKSLKGVHNHQELILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYY 114 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L P D ++ DP G+G F+ A+ Sbjct: 115 TPNKIVE---QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALKL---------GFK 157 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G + + A+ +R++ D NI Q T +F +N Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTN 209 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+GKK+ +++ + K L + D + LF + N L+ + G Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|312143636|ref|YP_003995082.1| rRNA (guanine-N(2)-)-methyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904287|gb|ADQ14728.1| rRNA (guanine-N(2)-)-methyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 379 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 21/140 (15%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAG--- 258 R L DP CG+G L +A + K L +T Sbjct: 190 KDRILIDPFCGSGTILIEAAMIAKNQAPGLKRNFISEKWPIFDNMLWAKTRVEAKKAKKI 249 Query: 259 ----MLIRRLESDPRRDLSKN-----------IQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 LI + DP I +D + +++ Y ++NPP+GK Sbjct: 250 DVEPRLIMGYDHDPEAISIARYHAKKAGVDDLIHFQEKKFEDFSSSRKYGYIITNPPYGK 309 Query: 304 KWEKDKDAVEKEHKNGELGR 323 + ++ K GE R Sbjct: 310 RMSDQEEVEALYKKMGEKFR 329 >gi|326790731|ref|YP_004308552.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Clostridium lentocellum DSM 5427] gi|326541495|gb|ADZ83354.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Clostridium lentocellum DSM 5427] Length = 290 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 78/273 (28%), Gaps = 53/273 (19%) Query: 110 NAKAIFEDFDFSSTI-------ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN--IYE 160 N ++IFE + I A LL K F+ +L + IY+ Sbjct: 5 NPQSIFEWMKWGEEILDEKGRPDSAIDAKLLMKYVLAFNETQLLLERQKRLDEGMQQIYK 64 Query: 161 HLIRR---------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 LI + F + E + PR LL+ + Sbjct: 65 SLIEKRSSGIPLQQLTGTQEFMGLEFQVNEHVLIPRQDTETLIEELLEQNKNFS------ 118 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + D G+G ++ + ++ E V + LE Sbjct: 119 FKRGIDIGTGSGCISITLAYYIKEL----------TMCAIDISEEALKVARHNIQKHDLE 168 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325 S + ++ ++ +SNPP+ K E + +E G R Sbjct: 169 KRIYTLKSD-------VLENYAEEEKVDLIVSNPPYISKEEVETLMIEV---IGHEPR-- 216 Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 L DG + F ++ + GG A Sbjct: 217 EALTDEGDG-LSFYKRISKAAKSYLKKGGVIAY 248 >gi|253572782|ref|ZP_04850182.1| BmhA [Bacteroides sp. 1_1_6] gi|304382595|ref|ZP_07365089.1| exopolyphosphatase [Prevotella marshii DSM 16973] gi|325858280|ref|ZP_08172557.1| helicase C-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|251837682|gb|EES65773.1| BmhA [Bacteroides sp. 1_1_6] gi|304336220|gb|EFM02462.1| exopolyphosphatase [Prevotella marshii DSM 16973] gi|325483087|gb|EGC86071.1| helicase C-terminal domain protein [Prevotella denticola CRIS 18C-A] Length = 1946 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 77/255 (30%), Gaps = 52/255 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHN 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 ++ ++L T ++R L + + + F Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPGKKTRTCGFEKIERPFNN------YFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + ++ GR + K GG Sbjct: 194 VSNIPFGDIAVFDPEFQ----RSDSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L S ++ +R L + + + LP +LF T + + L +L Sbjct: 242 VAFITSQGVL-----NSTKTSVRNELFSKADLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296 Query: 413 R--KTEERRGKVQLI 425 K E + + + Sbjct: 297 NLSKKEMSQDERLMT 311 >gi|210134683|ref|YP_002301122.1| type II R-M system methyltransferase [Helicobacter pylori P12] gi|210132651|gb|ACJ07642.1| type II R-M system methyltransferase [Helicobacter pylori P12] Length = 545 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSHYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 T DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -TFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q T +F +NPP+GKK+ +++ + K Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN----- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|207092523|ref|ZP_03240310.1| type II adenine specific methyltransferase [Helicobacter pylori HPKX_438_AG0C1] Length = 518 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTFPKDFDASQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 R++ D NI Q T +F +NPP+GKK+ +++ K+ N Sbjct: 177 RIKERYHLDC-PNIAQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKETFKQKFN---- 229 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|265751740|ref|ZP_06087533.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236532|gb|EEZ22002.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1938 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 82/257 (31%), Gaps = 56/257 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+++ + + + +P+ G G F+ D H Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARILEPSAGVGVFV--------DSVLRHS 147 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293 ++ ++L T ++R L D R + I++ F Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191 Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 +SN PFG D + ++ GR + K G Sbjct: 192 LAVSNIPFGDIAVFDPEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDAVRDG 239 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410 G A + S L S ++ +R + + + + LP +LF T + + L IL Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRDEMFRQAHLVSAIRLPNNLFTDNAGTEVGSDLIIL 294 Query: 411 SN--RKTEERRGKVQLI 425 +KTE + + + Sbjct: 295 QKDLKKTEMSQDERLMT 311 >gi|323141513|ref|ZP_08076400.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT 12067] gi|322414007|gb|EFY04839.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT 12067] Length = 1632 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 45/232 (19%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F + + E F + + GI+ +V+ +Y+ + Sbjct: 837 DAFDKEQQDVMERFY--------------KSVKERCEGID--NAAGKQKVIVELYDKFFK 880 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + ++ E TP +VV + D + + DP GTG F+T Sbjct: 881 KALAKTVEKLGIVYTPVEVVDFINQSVADVLRKEFNRSISDENIHVIDPFTGTGTFITRL 940 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSK--NIQQG 279 + + H E+ + + + + + I Sbjct: 941 LQSGLIKPQDIERKYKHELHANEIVLLAYYIASINIENAFHDVAKQENGTYTPFDGICLT 1000 Query: 280 STL--SKDLFTGKR----------------------FHYCLSNPPFGKKWEK 307 T +D + NPP+ + + Sbjct: 1001 DTFQMYEDKDNDVERLKFADVFPQNSQRVIAQSKVPMRVIIGNPPYSRTQKS 1052 >gi|237784930|ref|YP_002905635.1| hypothetical protein ckrop_0309 [Corynebacterium kroppenstedtii DSM 44385] gi|237757842|gb|ACR17092.1| hypothetical protein ckrop_0309 [Corynebacterium kroppenstedtii DSM 44385] Length = 943 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 52/224 (23%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKES 202 V + ++++ +++ + T + L D D+ + Sbjct: 299 KDVNPDIFGSMFQAVVQ---TGSRSELGQHYTSVPNILKTIEPLFLDDLKEQFDSAYNSV 355 Query: 203 PGMIR--------TLYDPTCGTGGFLTDAMNHVADCGSHH-----------------KIP 237 P + + ++DP CG+G FL A + + Sbjct: 356 PRLEKLLSRIADIKIFDPACGSGNFLVIAYKELRRLEHAILDRLAYLSPKHQTLFSDSVV 415 Query: 238 PILVPHGQELEPETHAVCVAGMLI--RRLESDPRRD-----------LSKNIQQGSTLSK 284 I +G E++ V + + I ++ + I + Sbjct: 416 KIDHFYGIEIDDFATEVAILALWIAKHQMNQEYLDKFGFQLPMIPLRSMGQITCANACRI 475 Query: 285 DL-----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 D + Y +SNPP+ +++ GR Sbjct: 476 DWQEVCPHQTEDEVYLISNPPY-LGSSMQTKEQKEDLAATYAGR 518 >gi|283769151|ref|ZP_06342055.1| N-6 DNA Methylase [Bulleidia extructa W1219] gi|283104127|gb|EFC05506.1| N-6 DNA Methylase [Bulleidia extructa W1219] Length = 2908 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 55/386 (14%), Positives = 107/386 (27%), Gaps = 72/386 (18%) Query: 44 LECALEPTRSAVREKYLAFG-GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLE 101 + LE V + I+ K ++F T E L NNLE Sbjct: 1048 ISYRLESDLERVFQNLTYTKLEKTIEEVEIKKTEAHNFKITEETLPEKLSPSERLNNNLE 1107 Query: 102 --SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 S + + + S+ L K + F + + S + Sbjct: 1108 VISMLNRVESGQREL-----DSTAQETLAKYVGWGGLADVFDE---SKEGQWEVARSFLK 1159 Query: 160 EHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 E+L + + F TP+ V+ + + +P+ G G Sbjct: 1160 ENLSPSEYEAARESTLTSFYTPKAVIDSVYK--------TLSDMGFKSGNILEPSMGVGN 1211 Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278 F+ + + + +G EL+ + + + I+ Sbjct: 1212 FIGNLPDEMKKSK----------FYGVELDSVSGRIGKL----------LYPESEVQIKG 1251 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + F+ F + N PFG+ D++ + + Sbjct: 1252 ---FEETTFSNNFFDAVIGNVPFGEYKVNDREYNKNNFLIHDY----------------- 1291 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 K GG A + +G + +RR++ + LP D F Sbjct: 1292 ---FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYIAARAEFLGAIRLPNDTF 1343 Query: 399 ---FRTNIATYLWILSNRKTEERRGK 421 T + + + L R + R + Sbjct: 1344 KGVAGTEVTSDIIFLKKRDSIRERDE 1369 >gi|195081752|ref|XP_001997355.1| GH11743 [Drosophila grimshawi] gi|193905442|gb|EDW04309.1| GH11743 [Drosophila grimshawi] Length = 486 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 60/207 (28%), Gaps = 21/207 (10%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI++ + + + + L + D L ++DP GTG L Sbjct: 180 HLIQQLSLKQRKFIGNTSMDAQLSLLMANQAMVRDGDL----------VFDPFVGTGSLL 229 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 230 VSAAKFGGYVLGADIDFMMIHARCRPSRISQKVRDKDESIRANLKQYGCADRYMDVLVAD 289 Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-- 337 S L+ + F +++PP+G + +K + K P S S+ Sbjct: 290 -FSNPLWQTRIAFDSIITDPPYGIREATEKVENKSNAKENTRTAEMAHYPSTSHYSLQNL 348 Query: 338 ---FLMHLANKLELPPNGGGRAAIVLS 361 L A L+ GGR L Sbjct: 349 YADLLQFSATHLK----LGGRLVCWLP 371 >gi|116662287|ref|YP_829341.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24] gi|116613051|gb|ABK05760.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24] Length = 1613 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 69/248 (27%), Gaps = 39/248 (15%) Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173 + E ++ S + LE Y+ + + ++ +YE + +E Sbjct: 791 VLEQYNLDSEVQNLED---FYRSVRVKAEGVGTAAGKQKI-ITELYEKFFKLAFPRTAES 846 Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232 TP +VV + D F S + DP GTG F+ + Sbjct: 847 LGIVYTPVEVVDFILRAVDDVLKKEFGVSISDEGVHVLDPFTGTGTFVVRLLQSGLIKPE 906 Query: 233 HHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESD-----------PRRDLSKNIQQ- 278 H EL + + + + ++ + I Sbjct: 907 DLLRKYTQELHANELLLMAYYIAAINIEATFHGILTEQAVEQGRDADTVGYESFGGIVLT 966 Query: 279 --------GSTLSKDLFTGKR----------FHYCLSNPPF--GKKWEKDKDAVEKEHKN 318 G TL + +FT + NPP+ G+ D +A K Sbjct: 967 DTFQMTEDGDTLDEHVFTNNNDRVVKQNALDIRVIIGNPPYSVGQSSGNDNNANLKYPTL 1026 Query: 319 GELGRFGP 326 E R Sbjct: 1027 DESIRRSY 1034 >gi|108797790|ref|YP_637987.1| hypothetical protein Mmcs_0812 [Mycobacterium sp. MCS] gi|119866882|ref|YP_936834.1| hypothetical protein Mkms_0828 [Mycobacterium sp. KMS] gi|108768209|gb|ABG06931.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692971|gb|ABL90044.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length = 1339 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 38/152 (25%) Query: 170 VSEGAEDFMTPRDVVHLATALLLDP-------------DDALFKESPGMIR-TLYDPTCG 215 A TPR + L+P D+ K S ++ + D G Sbjct: 563 SRRNAGAHYTPRPLAEEVVRYALEPVVYEPGPLQTNNIDEWKLKSSTAILDLKVADIAAG 622 Query: 216 TGGFLTDAMNHVADCGSH-----------------------HKIPPILVPHGQELEPETH 252 +G FL A +A + + +G ++ P Sbjct: 623 SGAFLVAAARFLAKRVTEAWTKEGMLNEAERADPLIAEERAIREVVARCLYGADINPMAV 682 Query: 253 AVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLS 283 +C + + L+ + P + I G++L Sbjct: 683 EMCKLSLWLVSLDKTKPFSFVDDKILCGNSLL 714 >gi|307244043|ref|ZP_07526162.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Peptostreptococcus stomatis DSM 17678] gi|306492567|gb|EFM64601.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Peptostreptococcus stomatis DSM 17678] Length = 300 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 40/290 (13%) Query: 111 AKAIFEDFD----FSSTIARLEKAGLLYKIC--KNFSGIELHPDTVPDRVMSNIYEHLIR 164 K I E + +S ARL+ +L I + + + MS I+E +I Sbjct: 3 IKDIIEKYSGLLSATSPTARLDVEIILCHILGWDRVKLMINYGQDLDSDKMS-IFEDMIA 61 Query: 165 R---------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 + F E + PR L L++ + + Sbjct: 62 KRLDQMPIAYIINKKEFMGLDFYVDERVLIPRPDTELLVEDLVESIGEMESTKQARDINV 121 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269 D G+G + + D + + + + + + Sbjct: 122 LDMCTGSGAIILSGASLWKDRAKEDSGKAK----DGTVNFIGVDISKSALEVATINRKSF 177 Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 + + + + +SNPP+ + + + R L Sbjct: 178 GLDTVKLIESDLFTNLGDYRGCLDIIVSNPPYIEDQVIEGLERDV---KDYEPR--LALA 232 Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 +DG M F + GG+ F E +++ Sbjct: 233 GGNDG-MDFYNRIIEDAYDYLKLGGKLV--------FESGHDQAEKILKK 273 >gi|291461471|dbj|BAI83353.1| conserved hypothetical protein [Macrococcus caseolyticus] Length = 549 Score = 40.3 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 51/428 (11%), Positives = 115/428 (26%), Gaps = 90/428 (21%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + + + TP + + T +D + ++ +P+CG G FLT Sbjct: 4 KTNTSDKKLRGAYYTPSSLANFMTNWAIDKN----------TYSILEPSCGDGVFLTSLS 53 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283 + D D ++ Sbjct: 54 KYKNDFKCTAIEIFEEEYLKAHKN-------------------VGGDSRFDVINADFYRQ 94 Query: 284 -KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 ++ K + + NPP+ + + ++ G+ S+ + + Sbjct: 95 FENDLKNKHYDLVIGNPPYIRYQYLSAEQRAEQSLILTDN----GM--KSNKLINAWVSF 148 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402 N G+ A+V+ + L A ++R++L+++ I+ +F Sbjct: 149 TVASVQLMNSNGKIALVIPAELLQVKYAE----DLRKYLMKHLQKITIITFKKLIFPDVE 204 Query: 403 IATYLWILSNRKTEERRGKVQLINATDL--WTSIRNE-----------------GKKRRI 443 + + E ++++I D+ + ++ R Sbjct: 205 QEVVVLLGEKISNETGTHQIRIIEYDDIADFDNLEKSSMPLNKVPFKDIDFNTTKWTRYF 264 Query: 444 INDDQRRQILDIYVSRENGKFSRMLD-----------------YRTFGYRRIKVLRPL-- 484 ++ +Q I I ++ FS + D Y +V RPL Sbjct: 265 LSKNQIELINSIQKDKKFYPFSNIADVDIGITTGNNKYFCLDLNTVKAYDLFEVTRPLIA 324 Query: 485 -----------RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 + + A K S + ++ G+ Sbjct: 325 RSVNISGITFNEKDWKYNIERGANTYLLDYNSKEYKELNSLQKEYIQLGEDNSENVGYKC 384 Query: 534 SFVKESIK 541 KE K Sbjct: 385 RIRKEWFK 392 >gi|157952871|ref|YP_001497763.1| hypothetical protein NY2A_B567L [Paramecium bursaria Chlorella virus NY2A] gi|155123098|gb|ABT14966.1| hypothetical protein NY2A_B567L [Paramecium bursaria Chlorella virus NY2A] Length = 371 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 75/251 (29%), Gaps = 64/251 (25%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 ++ G + F TP+ + ++ +P ++ +P+CG+G FL D Sbjct: 12 KKLGMKHRSKMGIFFTPKPLR----DIVFHH----IHINPQ---SVLEPSCGSGEFLIDC 60 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 D G EL+ V I L+ Sbjct: 61 ETRFPDAN----------ITGVELDETLARVSKEN------------TSRSVIHTQDFLT 98 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 D +F + NPPF + AV + G L++ L Sbjct: 99 FD---EGKFDLIIGNPPFVQM-----KAVNNQASTGRSN--------------LYIEILF 136 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFFRT 401 + N G A++L S+ + G R +L ++ E I F T Sbjct: 137 KCMTRHLNDNGVLAMILPSTIMN----GHFSRPTRELILSKKILHFETI---REHTFKDT 189 Query: 402 NIATYLWILSN 412 + ++ N Sbjct: 190 KAGVSILVVQN 200 >gi|297583075|ref|YP_003698855.1| putative type II restriction enzyme methylase subunit [Bacillus selenitireducens MLS10] gi|297141532|gb|ADH98289.1| putative type II restriction enzyme (methylase subunit) [Bacillus selenitireducens MLS10] Length = 885 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 33/127 (25%) Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------LVPHGQELEPETHA 253 +DP CG+G FL A + + +G E++ + Sbjct: 336 KFFDPACGSGNFLIIAYKEMRRIEINIIKRLKEIRGDYLYMPSITLDQLYGIEIDEFAYE 395 Query: 254 VCVAGMLIRRLESDPRRDL--------------SKNIQQGSTLSKDLFT-----GKRFHY 294 V + + I + + + S NI +G+ L + + Y Sbjct: 396 VALLSLWIADHQMNEELNNEIDNAVRPTLPLNISGNIHRGNALHMNWKNVCPNDPEDEVY 455 Query: 295 CLSNPPF 301 NPP+ Sbjct: 456 VFGNPPY 462 >gi|166366002|ref|YP_001658275.1| DNA methylase [Microcystis aeruginosa NIES-843] gi|166088375|dbj|BAG03083.1| DNA methylase [Microcystis aeruginosa NIES-843] Length = 879 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 46/195 (23%), Gaps = 46/195 (23%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDP 212 + T + L D E R DP Sbjct: 261 MNPKERRNLGAHYTSEKNIQKVIKPLFLDDLHREFEKIKGNRNKLLEFHKKIANLYFLDP 320 Query: 213 TCGTGGFLTDAMNHVADCG-----------------SHHKIPPILVPHGQELEPETHAVC 255 CG G FL + D S + G E + V Sbjct: 321 ACGCGNFLIITYRELRDLEILVLQELDKTGQLVTDISTIIQVDVNQFAGIEYDEFAVRVA 380 Query: 256 VAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT---GKRFHYCLSNP 299 M + + + + S I G+ L D ++ ++ L NP Sbjct: 381 EVAMWLIDHQMNIKVSNTFGQYFVRLPLKKSAKIVNGNALRIDWEEVISKEKLNFILGNP 440 Query: 300 PFGKKWEKDKDAVEK 314 PF ++ D E Sbjct: 441 PFVGHHYQNFDQKED 455 >gi|32266297|ref|NP_860329.1| hypothetical protein HH0798 [Helicobacter hepaticus ATCC 51449] gi|32262347|gb|AAP77395.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 1056 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 60/222 (27%), Gaps = 75/222 (33%) Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 + +FE+++F+ + S + + ++ ++E+LI Sbjct: 334 EAIFDVFENYNFT---------------IEE-STPDNQEIGIDPEMLGKVFENLI----- 372 Query: 169 EVSEGAEDFMTPRDVVHLAT----------------------------------ALLLDP 194 + ++ + F TPR++VH + Sbjct: 373 DYNKSSGAFYTPREIVHFMCKNVLTRTLQERILHDESHLTQDTESPHAHKDSLYNFIFYK 432 Query: 195 DDALFKESPGMIRT-------LYDPTCGTG----GFLTDAMNHVADCGSHHKIPP----- 238 F T + DP G+G G L++ + + + Sbjct: 433 QSDDFIAQNAKQLTQAITSLKILDPAIGSGAFPMGMLSEILEALHTLNPSLQKQDLARYK 492 Query: 239 ----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 +G +++ + + + + N+ Sbjct: 493 REIIEQQIYGTDIDADAIEIAKLRFWLSIAVDEDTPSPLPNL 534 >gi|15645106|ref|NP_207276.1| adenine specific DNA methyltransferase (VSPIM) [Helicobacter pylori 26695] gi|2313588|gb|AAD07545.1| adenine specific DNA methyltransferase (VSPIM) [Helicobacter pylori 26695] Length = 545 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%) Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202 +E+ ++ + + YE + + TP +V L P D ++ Sbjct: 82 LEILENSSDLEKLGSYYEE---ELSNATRNLEGIYYTPNRIVE---QLFTLPKDFDVSQA 135 Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 DP G+G F+ A+ + +G + + A+ + Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176 Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 R++ D NI Q T +F +NPP+GKK+ +++ + K Sbjct: 177 RIKERYHLDCL-NIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN- 229 Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|293369262|ref|ZP_06615851.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] gi|292635646|gb|EFF54149.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] Length = 308 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 57/245 (23%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ +L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ +Q + K F Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351 +SN PFG D + E + + S + FL K Sbjct: 194 VSNIPFG-----DVAVFDPEFSGSKDP------ARHSAARTIHNYFFL-----KSLDAVR 237 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408 GG A + S L + IR +++ + + + LP +LF T + + L Sbjct: 238 EGGIVAFITSQGVL----DAPTNAPIREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLI 293 Query: 409 ILSNR 413 IL Sbjct: 294 ILQKN 298 >gi|297588629|ref|ZP_06947272.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516] gi|297574002|gb|EFH92723.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516] Length = 2556 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 59/256 (23%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TPR+V +D + + +P+ G G F+ + + Sbjct: 840 FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFIGSMPSEIQSSK----- 886 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G E + + + NI Q + F+ F + Sbjct: 887 -----VYGVEKDSLSGRIAR------------ELYPEANI-QIKGFEETNFSNNFFDLVI 928 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG D++ + K GG Sbjct: 929 GNVPFGDFKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGII 968 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +R+++ + LP +F T + + + L R Sbjct: 969 AFIT-----SSGTMDKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDIIFLKKR 1023 Query: 414 KTEERRGKVQLINATD 429 + R + ATD Sbjct: 1024 DSVIERDDDWIHLATD 1039 >gi|313115520|ref|ZP_07800982.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255] gi|310622161|gb|EFQ05654.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255] Length = 1139 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 92/339 (27%), Gaps = 82/339 (24%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + + S T V+ + + +P+ G G F Sbjct: 499 EYAAARSSTLNAHYTSPTVIR--------GIYDAVERMGFRSGNILEPSMGVGNFFGMLP 550 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279 + + +G EL+ T + A + + E+ RRD Sbjct: 551 DSM----------AGSRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 593 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 + + N PFG+ DK +K G S + F Sbjct: 594 ------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFFA 626 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 + GG A V S +S R+ + E + + LP + F Sbjct: 627 KAI-----DQVRPGGIVAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFR 676 Query: 399 --FRTNIATYLWILSNRKTEERRG--KVQLINATDLWT--------SIRNEGKKRRIIND 446 T++ + + L R VQL D + G+ Sbjct: 677 ANAGTDVVSDIIFLQKRDRPADIEPAWVQLGKTEDGFDINQYFVDHPEMVLGELTTESTQ 736 Query: 447 DQRRQILDIYVSREN--GKFSRMLDYRTFGYRRIKVLRP 483 R ++ + + + + + + Y ++V P Sbjct: 737 YGREELTVAPIEGTSLADQLAEAVQHIEGQYTEVEVETP 775 >gi|295090193|emb|CBK76300.1| DNA methylase [Clostridium cf. saccharolyticum K10] Length = 2605 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 72/261 (27%), Gaps = 70/261 (26%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T V+ ++ + +P+CG G F Sbjct: 1047 EEYTAARASTLNAHYTSPTVIRAIY--------DAVEQMGFRTGNILEPSCGVGNFFGML 1098 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQ 278 + +G EL+ + + A + + E+ RRD Sbjct: 1099 PESM----------AGSRLYGVELDSISGRIARQLYPKADITVAGFETTDRRDF------ 1142 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + + N PFG+ DK +K G Sbjct: 1143 -------------YDLAIGNVPFGQYQVNDKAY----NKLGFNI---------------- 1169 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + K GG A V + +S +RR+L + + + LP + F Sbjct: 1170 HNYFFAKSLDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNNAF 1224 Query: 399 ---FRTNIATYLWILSNRKTE 416 T++ + + L R Sbjct: 1225 RANAGTDVVSDILFLQKRDRP 1245 >gi|195568199|ref|XP_002102105.1| GD19733 [Drosophila simulans] gi|194198032|gb|EDX11608.1| GD19733 [Drosophila simulans] Length = 488 Score = 40.3 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 13/200 (6%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI+ + + + + L + + L ++DP GTG L Sbjct: 180 HLIKELSLKHRKFIGNTSMDAQLSLLMANQAMVREGDL----------VFDPFVGTGSLL 229 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 230 VSAAKWGGYVLGADIDYMMVHARCRPSRITQKVREKDESIRANLKQYGCADRYMDVVVAD 289 Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S F +++PP+G + +K + K P S S+ L Sbjct: 290 -FSNPVWHPRISFDCIITDPPYGIREATEKVEKKASVKANTRSESMVHYPSTSHYSLQSL 348 Query: 340 M-HLANKLELPPNGGGRAAI 358 L GGR Sbjct: 349 YGDLLEFSAKHLRLGGRLVC 368 >gi|15896139|ref|NP_349488.1| S-adenosylmethionine-dependent methyltransferase, HEMK ortholog [Clostridium acetobutylicum ATCC 824] gi|15025933|gb|AAK80828.1|AE007786_1 S-adenosylmethionine-dependent methyltransferase, HEMK ortholog [Clostridium acetobutylicum ATCC 824] gi|325510293|gb|ADZ21929.1| S-adenosylmethionine-dependent methyltransferase [Clostridium acetobutylicum EA 2018] Length = 285 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 28/179 (15%) Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR + +L+ + + + D G+G + D Sbjct: 93 PRPDTEILVEAVLEYIELNN------YKKVCDVCTGSGAIGLSIAKYAKDV--------- 137 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 ++ P+ V + L + R I+ G L K + G++F +SNP Sbjct: 138 -EVLCSDISPDAIRVSKIN--RQGLNLEDRV----KIENGDLLEKPIERGEKFDIVVSNP 190 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 P+ + +D + K + + L DG + F + + + GG A Sbjct: 191 PYIR-----EDEIPKLMDDVKDYEPIIALVGGEDG-LDFYRRITSMSKKVLKPGGLIAY 243 >gi|315122389|ref|YP_004062878.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495791|gb|ADR52390.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 967 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 87 SLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSSTIARLEKAGLLYKICK 138 +LS L +N I S + + +FE+ DFS+ ++ E+ +L K+ + Sbjct: 168 TLSRLYCSNIGVEFMHIINSKERDWIRDVFENPDFSNKLSNDERKSILKKLVE 220 >gi|192289768|ref|YP_001990373.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Rhodopseudomonas palustris TIE-1] gi|192283517|gb|ACE99897.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific [Rhodopseudomonas palustris TIE-1] Length = 340 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 18/122 (14%) Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR + D D ++P I + D G+G A P Sbjct: 149 PRSYIGELLDSHFDGGDTSLIDAPEAIERVLDLCTGSGCLAILA----------AYAFPN 198 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 +L + AV + RL+ + G D +R+ ++NP Sbjct: 199 ATVDAVDLSKDALAVATRNVAEHRLDDRVS------LYHGDLF--DPLGDERYDLIITNP 250 Query: 300 PF 301 P+ Sbjct: 251 PY 252 >gi|319891854|ref|YP_004148729.1| hypothetical protein SPSINT_0564 [Staphylococcus pseudintermedius HKU10-03] gi|317161550|gb|ADV05093.1| hypothetical phage protein [Staphylococcus pseudintermedius HKU10-03] Length = 225 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 14/111 (12%) Query: 159 YEHLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 ++ F E + + + TP+ + L ++ + D T Y+P GT Sbjct: 51 FDWFHEYFQDEHADRKKKKQDFTPKSISKLLSSFVSSEDG-----------TYYEPAAGT 99 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLES 266 GG L + S + P + +EL T + MLIR + Sbjct: 100 GGILIQKWDDDRMKHSPLEYMPSFYFYTAEELSDRTIPFLLFNMLIRGMNG 150 >gi|213962117|ref|ZP_03390381.1| type III restriction enzyme, res subunit family [Capnocytophaga sputigena Capno] gi|213955123|gb|EEB66441.1| type III restriction enzyme, res subunit family [Capnocytophaga sputigena Capno] Length = 2020 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 65/462 (14%), Positives = 131/462 (28%), Gaps = 61/462 (13%) Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180 + I L + L + + + + D + + I E+ + +++ T Sbjct: 541 NEEITTLVNS--LTFVADDNTIQLNEGIQITDEIKNTISEYKSGGITKDNRGVLDEYYTD 598 Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240 +V+ L+ + + + +P+ GTG FL N Sbjct: 599 EKLVNAVRNLIKNNFSGKQSIN------VLEPSVGTGNFLHATDNLGLKTNVSA------ 646 Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 E+ T + L+ S R + KD ++ + NPP Sbjct: 647 ----FEINETTAKIAK---LLHPEASINLRSFETEFITDKGIKKDFSP--QYDLVIGNPP 697 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 +G + +E K LP+ D + + N G A+VL Sbjct: 698 YG-NHRGLYLGLGEETK----------LPRYED-------YFVKRSLDVMNEGATLAMVL 739 Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 S L SG + LP +F T++ T + IL + + Sbjct: 740 PSGWLNRQDKLSGAELSEAY-----------RLPNGVFKATDVGTDIVILRKNSQAQTQN 788 Query: 421 KVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENGKFSRMLDYRTFGY 475 +K R ++ L K + +T Sbjct: 789 ISNYFKEHPQQILGDTLQRKNRFGREEDYVKGNLDDALTRLQEFTTKKVIQPEQTQT--T 846 Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKL-SPLHQSFWLDILKPMMQQIYPYGWAES 534 R +++ K +A E D+ + + + + ++ + + Q I + + Sbjct: 847 REVQLDMFSTFESAPAKEPIAEKEEDVVVTTVPNEEYNNLLVEAKEKVGQAINIFRNIKF 906 Query: 535 FVKESIKS-NEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575 I + L K + +AD + Sbjct: 907 KSLAVITEWDNYAALLRKLDRKNTKFTKEELSDISKKADSII 948 >gi|323448370|gb|EGB04269.1| hypothetical protein AURANDRAFT_32742 [Aureococcus anophagefferens] Length = 308 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 18/180 (10%) Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETH 252 +D ++ P R + D CG G L +V D K G + E+ Sbjct: 83 NDEPLEQQP---RAVADMGCGDGRLLLTLYEYVRDQTKRGKHLDKHPLTLIGVDFNDESL 139 Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDK 309 V A + + + +Q G + F ++ Y + + + Sbjct: 140 EVTKATLARAGVPFE--------VQWGD-IGDPAFVVEALEKKGYARDSVLHVRSFLDHD 190 Query: 310 DAVEKEHKNGELGR-FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368 ++ + R + G+ +DG ++ + L A L G Sbjct: 191 RPYVAPKRDADAFRMYTRGVYVRNDGDVIAPKTMLQSLVEHLERWSDAVGFHGLCVLEAG 250 >gi|170761535|ref|YP_001786653.1| restriction endonuclease family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408524|gb|ACA56935.1| restriction endonuclease family protein [Clostridium botulinum A3 str. Loch Maree] Length = 747 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 19/158 (12%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135 F N + L ++ N + YI + + DF L L K Sbjct: 96 LVFDNADKKFLESIFKDNIK---YEYINPSYYS----LDKGDFLHYENDLFYRYNMFLNK 148 Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195 I + + ++ + IYE +I ++ + F TP ++ + Sbjct: 149 IIDEINTFDFIKNSG---EIGEIYEKII---STKYKKSMGIFYTPEYIIDYILENVFYE- 201 Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 F L D + G G F+ A + + + Sbjct: 202 ---FSPLKNPFVKLIDISAGAGYFIIKAYDKLKKVFTE 236 >gi|320321569|gb|EFW77678.1| helicase domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] Length = 1592 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 62/220 (28%), Gaps = 49/220 (22%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 +++P GTG F+ + EL+P T + Sbjct: 7 PGGKIFEPAAGTGNFIGLMPEGIR---------KESQFTAVELDPLTAEIGK-----HLY 52 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 + + L + F C++NPPFG + D E + Sbjct: 53 PTATYLNRG--------LQDVVVPSGYFDACVANPPFGSQSLYDPHHRELSGYSIHNY-- 102 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 FL +KL+ GG +V+S L A +G R + E Sbjct: 103 -------------FLAKSLDKLKP----GGVMGVVVSRYFL---DAANG--RAREHIAEQ 140 Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421 + LP F T + T + E K Sbjct: 141 SHFLGAIRLPNTAFKENALTEVTTDIVFFQKAIPGEETDK 180 >gi|302392965|ref|YP_003828785.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Acetohalobium arabaticum DSM 5501] gi|302205042|gb|ADL13720.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Acetohalobium arabaticum DSM 5501] Length = 307 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 21/195 (10%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + F S + ED + PR ++ + L + + T+ D G+G + Sbjct: 81 QEFMSLKFKVNEDVLIPRPETEHLVEAVIQRVNKLADKREKL--TVIDLCTGSGAIIISL 138 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +AD G ++ E AV + ++++ + G L+ Sbjct: 139 AKELADVPLEIN------YIGTDVSQEALAVAKDNAKLHQVQNQIQFL------VGDLLN 186 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + +SNPP+ K+ +E E + G I F + Sbjct: 187 PVKELNLKPDIIISNPPYIAD--KELQELEPELQYEPEIALKAGENGID-----FYRQII 239 Query: 344 NKLELPPNGGGRAAI 358 ++ E GG Sbjct: 240 SETEQLLTDGGIIGF 254 >gi|300774274|ref|ZP_07084140.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300758867|gb|EFK55697.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 833 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 64/239 (26%), Gaps = 68/239 (28%) Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-------- 154 Y+ +FE +T+ ++ + F D Sbjct: 318 YLNG------GLFEPEKNKATLEVDFPTDYFKELLEFFDQYNFTIDENSPDDHEVGIDPE 371 Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA------------------------ 189 + +I+E+L+ E + F TP+++V Sbjct: 372 MLGHIFENLL-----EDNRDKGAFYTPKEIVQYMCKESLIQYLLNTFREEKDIEDFIRLH 426 Query: 190 ----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234 L D ++A+ + DP G+G F + + + Sbjct: 427 TVTPFLADKENAVLLNKKLDDIKVCDPAIGSGAFPIGMLQEIFEAKRFIYPYLKTNEAFN 486 Query: 235 -----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSK 284 K +G +LE + + + + N I QG++L + Sbjct: 487 PADVKKNIIQNSIYGVDLEKGAVDIAQLRFWLSLVVEELNPHPLPNLDYKIMQGNSLLE 545 >gi|242347983|ref|YP_002995544.1| hypothetical protein pRA1_0046 [Aeromonas hydrophila] gi|242348119|ref|YP_002995679.1| hypothetical protein pRAx_0023 [Escherichia coli] gi|224831708|gb|ACN66840.1| conserved hypothetical protein [Escherichia coli] gi|224831802|gb|ACN66933.1| conserved hypothetical protein [Aeromonas hydrophila] Length = 211 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 16/115 (13%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +G F TP ++ L + ++ Y+P CG+G +A++ + + Sbjct: 89 KKGTNYFPTPPEIGRLMSLII----------GSQSSANFYEPCCGSG---INAIHWMENL 135 Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +H + + ++++P C L ES +I TLS Sbjct: 136 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPNMLSIVGIDTLS 189 >gi|160942833|ref|ZP_02090073.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii M21/2] gi|158445885|gb|EDP22888.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii M21/2] Length = 1925 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 70/261 (26%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + + T V+ + + +P+ G G F Sbjct: 381 EEYAAARASTLNAHYTSPIVIRAIY--------DAVERMGFQSGNILEPSMGVGNFFGML 432 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278 + +AD +G EL+ T + A + + E+ RRD Sbjct: 433 PDSMAD----------SRLYGVELDSITGRIAQKLYPQADITVAGFETTDRRDF------ 476 Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 + + N PFG+ DK +K G S + F Sbjct: 477 -------------YDLAIGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFF 508 Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398 + GG A V S + S +S R+++ E + + LP D F Sbjct: 509 AKTI-----DQIRPGGVIAFVTSHFTM-----DSKDSSARKYMAERANLLGAIRLPNDAF 558 Query: 399 ---FRTNIATYLWILSNRKTE 416 T + + + L R Sbjct: 559 KANAGTEVVSDIIFLQKRDRP 579 >gi|329960658|ref|ZP_08299001.1| hypothetical protein HMPREF9446_00560 [Bacteroides fluxus YIT 12057] gi|328532531|gb|EGF59325.1| hypothetical protein HMPREF9446_00560 [Bacteroides fluxus YIT 12057] Length = 912 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 74/266 (27%), Gaps = 38/266 (14%) Query: 44 LECALEPTRSAVREKYLAFGGSNIDLESF-----VKVAGYSFYNTSE---YSLSTLGSTN 95 L T + V +Y A KV YN + L +L S Sbjct: 252 LSAVFSSTINDVDREYKAIYALQTTYAIIVKLIACKVLDRLNYNAEADVYHDLLSLDSGK 311 Query: 96 TRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVP 151 R+ + +S + + E FS + LY + K I+ + Sbjct: 312 MRSFFQRMEDGYSYSNMGVRNFLEGDFFSWYADEAQWGDKLYDALLKLMVNIDYYSSFSL 371 Query: 152 D------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 + V ++Y +I + + ++ TP + + Sbjct: 372 NVRYAPIDVFKDLYMSIIPQ---SIRHSMGEYFTPEWLADSVVEKAIGYVGNS------- 421 Query: 206 IRTLYDPTCGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVC 255 DP CG+G F+ + + I +G ++ P + Sbjct: 422 RWKAIDPCCGSGIFIITLIKKLVGDISLGELTRKNKELLLEEIINRVYGIDINPLSVLSA 481 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGST 281 + + +D+ + G + Sbjct: 482 RISYYLAIHQLGDVKDVEIPVYLGDS 507 >gi|167856493|ref|ZP_02479208.1| hypothetical protein HPS_09365 [Haemophilus parasuis 29755] gi|167852388|gb|EDS23687.1| hypothetical protein HPS_09365 [Haemophilus parasuis 29755] Length = 436 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 79/293 (26%), Gaps = 66/293 (22%) Query: 40 LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTR 97 +L RL + + + ++ D + + + Y TS + L + Sbjct: 6 VLFRLSESDKGQNQDIEKRRKKLSEIFSDNINNNEKEYLALYVLQTSYAIIVKLIACKVI 65 Query: 98 NNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK----------------------- 129 L SFS++ K +I + + +LE Sbjct: 66 QTL-----SFSEDVKFFSDLSIIDSIKLQRFMEKLEDGYVFSSGGVRNLLEGDFYSWYSD 120 Query: 130 ----AGLLYKICKNF-------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178 +Y KN S + + ++Y ++ E+ ++ Sbjct: 121 KNQWNPKIYNSIKNIIKELEFYSSSNFSYEFQTIDIFKDLYMEIMPN---EIRHSLGEYF 177 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HH 234 TP + + ++ DP CG+G FL + + D Sbjct: 178 TPSWMADHVVS-------RSLEKLNKESWKAIDPCCGSGVFLISLIKSILDKHELYSLTI 230 Query: 235 KIPPI------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 K +G +L P + + + + + G + Sbjct: 231 KEKQELLLRILSSVYGIDLNPLSVLTARVSYFLAIRPLIDEQKIEIPVYLGDS 283 >gi|90418996|ref|ZP_01226907.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90337076|gb|EAS50781.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 1181 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 53/212 (25%), Gaps = 51/212 (24%) Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK--ICKNFSGIELHPDTVPDRVMSN 157 L + + S+ +FE L LL + + V+ Sbjct: 155 LIAQCNALSETMGFMFEKI--GDATELLLPDNLLATDGLIRKLVQNSDTASWQDVEVIGW 212 Query: 158 IYEHLIRRFGSEVSEG---------------AEDFMTPRDVVHLATALLL---------- 192 +Y+ I +V + A TP +V L Sbjct: 213 LYQFYISEKKDDVFDKLKKKNIKITAANIPAATQLFTPHWIVRYLVENSLGRLWLLNNPS 272 Query: 193 --------------DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 +P+ K + DP CG+G LT A + + Sbjct: 273 SRLAEKMDYYIAPEEPETDFLKIGSPEEIKVCDPACGSGHMLTYAFDLLYMIYEEAGYRA 332 Query: 239 IL--------VPHGQELEPETHAVCVAGMLIR 262 G E++ A+ + ++ Sbjct: 333 RDIPALIIEKNLQGIEIDDRAGALAAFSLTMK 364 >gi|317013330|gb|ADU83938.1| adenine specific DNA methyltransferase [Helicobacter pylori Lithuania75] Length = 2866 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 100/329 (30%), Gaps = 69/329 (20%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 F S + + TP L + D L + + +++P+ GTG F+ Sbjct: 987 EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1038 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +H G EL+P + ++ + L N +T + Sbjct: 1039 -------AHAPSDKNYRFMGTELDPISASIS--------------QFLYPNQVIQNTALE 1077 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 + + + NPP+G + E +++ FL Sbjct: 1078 KHSFHQDYDAFVGNPPYGNHKIYSSNDKELSNESVHNY---------------FLGKAIK 1122 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404 +L+ G A V+ S F ++R + +N + LP +F T Sbjct: 1123 ELKDD----GIGAFVV--SSWFMDAKNP---KMREHIAKNATFLGAIRLPNSVFKGTGAE 1173 Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILD 454 I+ +K ++ A + I N + + + +I++ Sbjct: 1174 VTSDIVFFKKGVDKATNQSFTKAMPYYDKIINGLDDDTLFALQNNRFDSFTPSDQLKIVN 1233 Query: 455 I----YVSRENGKFSRM--LDYRTFGYRR 477 + ++ +D FGY+ Sbjct: 1234 AIASHFGLKQEKLQRWYEKIDTANFGYKE 1262 >gi|169824650|ref|YP_001692261.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328] gi|167831455|dbj|BAG08371.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328] Length = 2547 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 59/256 (23%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TPR+V +D + + +P+ G G F+ + + Sbjct: 840 FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFIGSMPSEIQSSK----- 886 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G E + + + NI Q + F+ F + Sbjct: 887 -----VYGVEKDSLSGRIAR------------ELYPEANI-QIKGFEETNFSNNFFDLVI 928 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG D++ + K GG Sbjct: 929 GNVPFGDFKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGII 968 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +R+++ + LP +F T + + + L R Sbjct: 969 AFIT-----SSGTMDKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDIIFLKKR 1023 Query: 414 KTEERRGKVQLINATD 429 + R + ATD Sbjct: 1024 DSVIERDDDWIHLATD 1039 >gi|323143062|ref|ZP_08077766.1| type I restriction modification DNA specificity domain protein [Succinatimonas hippei YIT 12066] gi|322417163|gb|EFY07793.1| type I restriction modification DNA specificity domain protein [Succinatimonas hippei YIT 12066] Length = 575 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413 GR A+V+ + + + RR ++E+ ++A + LP + + T + + + Sbjct: 251 GRFAVVVP--VNYGTASMHSFLQNRRTIVESGRLKATILLPGGFLVGSLVNTLILLFDKK 308 Query: 414 KTEERRGKVQLINAT-DLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 + ++ LI+ T D+ G++R +N+ + Q++ + Sbjct: 309 NANHQ--QISLIDLTKDVCLDKAKSGRQRIALNEYAKNQVIAVLQD 352 >gi|315606198|ref|ZP_07881225.1| type II restriction enzyme [Actinomyces sp. oral taxon 180 str. F0310] gi|315312086|gb|EFU60176.1| type II restriction enzyme [Actinomyces sp. oral taxon 180 str. F0310] Length = 918 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 62/422 (14%), Positives = 120/422 (28%), Gaps = 84/422 (19%) Query: 88 LSTLGSTNTRNNLESYIASFSDNAKAIF--EDFDFSSTIARLEKAGLLYKICKNFSGIEL 145 L + + + +Y+A F +F + F T + +A LL + I Sbjct: 228 FKALDTERSEDK-PAYLAGFPYVNGRLFSTDHSLFVPTFTKAARAMLLGLGTLIWQEINP 286 Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD---------- 195 + ++++ ++ T + L D Sbjct: 287 -------DIFGSMFQAIV---TPGKRSDLGQHYTSVPNILKTIEPLFLDDLRKEFDTAWD 336 Query: 196 -----DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---------------- 234 + L + ++DP CG+G FL A + Sbjct: 337 SAKKLEDLLDRISEI--RIFDPACGSGNFLVIAYKELRRLEHAILERLADLDPSHNTLFT 394 Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-------------IQQGS 280 + I +G E++ V + + I + + + I G+ Sbjct: 395 DSVISIEHFYGIEIDDFAVEVAILSLWIAKHQMNREFKDKFGTTIPLIPLKEAGAIHAGN 454 Query: 281 TLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 D G Y + NPP+G +K K A ++++ R P + Sbjct: 455 ATRIDWNTICKNDGSTEIYLIGNPPYGG-AKKLKAAQKQDYDYAFGDR-----PYSKNLD 508 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 + L + A V ++S AG I LE Sbjct: 509 YIAL-WFIKGAAYIRRTQAQLAFVSTNSVTQGEHAGLMFPMILEMGLEIGYAYTSFKWEN 567 Query: 396 DLFFRTNIATYLW----ILSNRK---TEERRGKV-----QLINATDLWTSIRNEGKKRRI 443 + + + I + +K +E R +V LI+A D++ R + R Sbjct: 568 NAKRNAGVTVVVVSLRNITNKQKYLYSEHIRTQVTNINGYLIDADDIYIRTRKQDPLTRY 627 Query: 444 IN 445 + Sbjct: 628 LP 629 >gi|77404497|ref|YP_345073.1| hypothetical protein pREC1_0012 [Rhodococcus erythropolis PR4] gi|77019878|dbj|BAE46253.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 2936 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 61/253 (24%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R F T +V + + + +P CG G F+ A Sbjct: 1050 RGFAQARETTLNAHYTDPSIVAELWRSV-------ERAGLPENALILEPGCGAGHFVGTA 1102 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 P + G E+EP + + + S+ I+ Sbjct: 1103 -------------PAGVNMVGVEIEPISAQIA------------HQLYPSQQIRN-HGFE 1136 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + + F + N PFGK D +DG L + Sbjct: 1137 RAFAPDETFSGAIGNVPFGKHGVPDPIHN-------------------ADGHSLHNQFIL 1177 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 L GG A+V + + A ++R+ + + + V LPT F + Sbjct: 1178 KSLA-LTAPGGYVAVV---TSAYTSDARRP--DVRKKITADADLVGAVRLPTGAFDRQAK 1231 Query: 401 TNIATYLWILSNR 413 T + T + I R Sbjct: 1232 TAVVTDVLIFRRR 1244 >gi|294643316|ref|ZP_06721141.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|292641338|gb|EFF59531.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] Length = 650 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%) Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 GLL + + NF+ E P+ V ++ I+E+L+ E ++ F TP+++V Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406 Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217 + D + E I + DP G+G Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466 Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 F + N V + + + +G ++E + + + Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526 Query: 266 SDPRRDLSKN----IQQGSTLSK 284 + + N I QG++L + Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549 >gi|218133895|ref|ZP_03462699.1| hypothetical protein BACPEC_01784 [Bacteroides pectinophilus ATCC 43243] gi|217991270|gb|EEC57276.1| hypothetical protein BACPEC_01784 [Bacteroides pectinophilus ATCC 43243] Length = 1444 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 82/316 (25%), Gaps = 64/316 (20%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN-IYEH 161 F N AI E + + A E+ +L + + ++ + + Sbjct: 1162 EKFQRNVAAIKLLEQIEGENRYATPEEQQILSQYVGWGGLADAFDESKSNWSAEYHQLKE 1221 Query: 162 LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ + T ++ ++ + +P+ G G F Sbjct: 1222 LLSPEEYRMARESTLNAHYTSPVIIRQMYE--------TLEKMGFSKGNVLEPSMGIGNF 1273 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 + + + +G EL+ T + I+ Sbjct: 1274 FGMMPDSMIE----------SRLYGVELDSITGRIAK----------QLYPQADVQIKG- 1312 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 K + F + N PFG+ DK + + Sbjct: 1313 --FEKTDYPNDFFDVAIGNVPFGQYKVADKQYDKNNFLIHDY------------------ 1352 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398 K GG A + S + E+RR+L + + V LP F Sbjct: 1353 --FFAKTLDKVRPGGVVAFITSKGTM-----DKASPEVRRYLAQRADLLGAVRLPNTAFK 1405 Query: 399 --FRTNIATYLWILSN 412 T + + + S Sbjct: 1406 ANAGTEVTSDILFFSR 1421 >gi|307243528|ref|ZP_07525676.1| THUMP domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493084|gb|EFM65089.1| THUMP domain protein [Peptostreptococcus stomatis DSM 17678] Length = 382 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 36/148 (24%) Query: 204 GMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPIL----------- 240 RTL DP CG+G L +A +++ Sbjct: 192 RPGRTLVDPMCGSGTILIEAAMIGINMAPGMNREFISEKWRTIDKKIWWEVRKEAFDLLK 251 Query: 241 -----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G +++PE+ + I +E R + + S + + + Sbjct: 252 DDESFTIYGYDIDPESIEIAKNNAEIAGVEKYIRFECRDATKFAS--------NEEYGFI 303 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++NPP+G++ E + + G R Sbjct: 304 ITNPPYGERLEDQESVKLLYKELGYAFR 331 >gi|307244421|ref|ZP_07526532.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis DSM 17678] gi|306492240|gb|EFM64282.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis DSM 17678] Length = 2967 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 58/387 (14%), Positives = 110/387 (28%), Gaps = 72/387 (18%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGS-TNTRNNL 100 RLE LE + K +ID ++ K ++F T E L NL Sbjct: 1106 RLESDLERIFENLTYKKSKDIIQDIDEKAEKPKTEVHNFKITEEILPEKLTPSERLNQNL 1165 Query: 101 ESY--IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 E+ + + + +A+ G L ++ + + Sbjct: 1166 EAISMLNRVESGQRELDSTAQ--EVLAKYIGWGGLSEVFDESKEGQWKEARA------FL 1217 Query: 159 YEHLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 E+L + + S F TP+ V+ + + +P+ G G Sbjct: 1218 KENLSQDEYDSAKESTLTSFYTPKTVIDSIYS--------TLSGMGFKSGNILEPSMGIG 1269 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 N + + +G EL+ + + + I+ Sbjct: 1270 -------NFIGNIPDEMNKSK---FYGVELDSVSGRIGKL----------LYPESDIQIK 1309 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 L + F+ F + N PFG+ D++ + + Sbjct: 1310 G---LEETSFSNNFFDAVIGNVPFGEYKVNDREYNKNNFLIHDY---------------- 1350 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 K GG A + +G + +RR+L + LP D Sbjct: 1351 ----FFAKSIDKVRNGGIIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDT 1401 Query: 398 F---FRTNIATYLWILSNRKTEERRGK 421 F T + + + L R + R + Sbjct: 1402 FKGVAGTEVTSDIIFLKKRDSIRERDE 1428 >gi|290969266|ref|ZP_06560791.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780772|gb|EFD93375.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 2905 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 51/397 (12%), Positives = 112/397 (28%), Gaps = 69/397 (17%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ D + + +P+ G G N + + Sbjct: 1175 FFTPKTVI--------DGVYKTLSDMGFKQGNILEPSMGIG-------NFIGNIPDEMNK 1219 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G EL+ + + + I+ L + F+ F + Sbjct: 1220 SK---FYGVELDSVSGRIGKL----------LYPESDIQIKG---LEETSFSNNFFDAII 1263 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D++ + + K GG Sbjct: 1264 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1303 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +RR+L + LP D F T + + + L R Sbjct: 1304 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1358 Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473 + R + + A D + N K + + +I N + Sbjct: 1359 DSIRERDEDWIHLAEDENGLLYN--KYFVDHPEQVLGSMEEISGRFGNTIACLPKENTDL 1416 Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533 + + ++ + + L+ +I+ + ++F I+ + E Sbjct: 1417 --KELLTKASEEIAKNANYEEIELLDDEISTIPATDDVKNFSYTIID------DEVYYRE 1468 Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 + + + + K+K A + ++ Sbjct: 1469 NSLFVKKEVTDKNKEKIKDYLELNAALKDVISKQKED 1505 >gi|295399528|ref|ZP_06809510.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|312109916|ref|YP_003988232.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1] gi|294978994|gb|EFG54590.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|311215017|gb|ADP73621.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1] Length = 329 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 41/322 (12%), Positives = 97/322 (30%), Gaps = 39/322 (12%) Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189 +L + L ++ E + + F V +G +++ P + Sbjct: 41 GDVLQNEVSEINAQRLKKQYNDIQLERFTNEEIRKAFQLAVLKGMKEYTQPHHQMTPDAV 100 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 L + T+ DP GT LT +NH+ + +G +++ Sbjct: 101 SLFISYLVNQFTRKHLALTILDPAVGTANLLTTVLNHLKGKQTKS--------YGVDVDD 152 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + +++ + LF P +++ Sbjct: 153 VLIKLAYVNANLQKHAIQLFNQDG---------LQPLFVELADVVICDLPVGYYPHKENA 203 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 + + G S LF+ + GG ++ + LF+ Sbjct: 204 SRFVLKAEEGH-----------SYAHHLFIEQSLYYTKE----GGYLFFLIPN-TLFSSD 247 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINAT 428 +++ ++ E+ +I+ ++ LP +F A ++IL + K + K L Sbjct: 248 QA---AKLHDFIKEHAVIQGLLQLPLSMFKTERAAKSIFILQKKGKNVKAPKKALLAELP 304 Query: 429 DL--WTSIRNEGKKRRIINDDQ 448 ++ +K ++ Sbjct: 305 RFSNKQMMQAMMRKIDEWITEE 326 >gi|119508907|ref|ZP_01628059.1| hypothetical protein N9414_21045 [Nodularia spumigena CCY9414] gi|119466436|gb|EAW47321.1| hypothetical protein N9414_21045 [Nodularia spumigena CCY9414] Length = 1622 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 4/134 (2%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 + R + + + TP+ + L + T+ +P G+ FL Sbjct: 559 FLFRLAGRDRQKSASYYTPQSLTECLVKYALKELLTDKTADDILNLTICEPAMGSAAFLN 618 Query: 222 DAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI-Q 277 +A++ +A ++ + LE + + +A + ++ +P + Sbjct: 619 EAIDQLAAAYLERKQAELNQRIPHDDISLEMQKVKMLLADRNVFGIDKNPVAMELAEVSL 678 Query: 278 QGSTLSKDLFTGKR 291 + + D ++ Sbjct: 679 WLNCIYGDPKAPEK 692 >gi|169829575|ref|YP_001699733.1| hypothetical protein Bsph_4142 [Lysinibacillus sphaericus C3-41] gi|168994063|gb|ACA41603.1| Hypothetical ytxK protein [Lysinibacillus sphaericus C3-41] Length = 309 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 9/95 (9%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 LF+ N + L+ S LF+ ++ +++ ++ I+AI+ LP Sbjct: 203 LFMEQSMNYTKEGGYL-----FFLAPSHLFDSEQS---KQLHKYIQKHAWIQAIIQLPDS 254 Query: 397 LFFRTNIATYLWILSNR-KTEERRGKVQLINATDL 430 +F ++ + IL + K + +V L ++ Sbjct: 255 MFANKSLEKSIVILQKQSKECQSPKEVLLAKVPNM 289 >gi|37522309|ref|NP_925686.1| hypothetical protein gll2740 [Gloeobacter violaceus PCC 7421] gi|35213309|dbj|BAC90681.1| gll2740 [Gloeobacter violaceus PCC 7421] Length = 1442 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 6/69 (8%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMN 225 + + + TP V L P A + DP G+G FL +A Sbjct: 503 KASGSYYTPHSFVRFLVQETLGPQVAERSPQSDPKPLEILKLKVCDPAMGSGHFLVEACR 562 Query: 226 HVADCGSHH 234 + + Sbjct: 563 FLGEKLYEA 571 >gi|332664747|ref|YP_004447535.1| hypothetical protein Halhy_2794 [Haliscomenobacter hydrossis DSM 1100] gi|332333561|gb|AEE50662.1| hypothetical protein Halhy_2794 [Haliscomenobacter hydrossis DSM 1100] Length = 1556 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 30/153 (19%) Query: 168 SEVSEGAEDFMTPRDVVH---------LATALLLDPDDALFKESPGMIR----TLYDPTC 214 E + TP ++V L +LL + + + D C Sbjct: 457 QEGGREFQSHYTPEELVQPLIKHSLEYLIEDILLLYKQQKSNKESTIKALLKLKVCDVAC 516 Query: 215 GTGGFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 G+G L A + K +G + P +C Sbjct: 517 GSGHILLSAARRIALAVAGVQTDEDQPNPLSIRKAMKEVVRNCIYGVDKNPLAVELCKIA 576 Query: 259 MLIRRLES-DPRRDLSKNIQQGSTLSKDLFTGK 290 + + +P L +I+ G + + Sbjct: 577 LWLEAYNPGEPLNFLDHHIKCGDAIVGLAHRSE 609 >gi|308270548|emb|CBX27160.1| hypothetical protein N47_A11890 [uncultured Desulfobacterium sp.] Length = 1013 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 39/178 (21%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNL 100 RL+ R A + + + E F+ + F N + + Sbjct: 98 RLKDNYGQHRDA--NYLMRYKDQFKNPEKFLNLINEIVPFLNGGLFECLDNKTDKI---- 151 Query: 101 ESYIASFSDNA----KAIFEDFDFSSTIARLEKAGL---------------LYKICK--N 139 YI FSDN + I DF F ++ +G+ L I + Sbjct: 152 --YIDGFSDNLAKPHQLIVPDFLFFGFDREVDLSGVVGINTNAFKNANVKGLIPILESYK 209 Query: 140 FSGIELHPDTVP----DRVMSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATA 189 F+ E P ++ ++E+L+ + E + F TPR++V+ Sbjct: 210 FTIAENTPIEEDVALDPELLGKVFENLLASYNPETKTTARKQTGSFYTPREIVNYMVD 267 >gi|315586445|gb|ADU40826.1| adenine specific DNA methyltransferase [Helicobacter pylori 35A] Length = 545 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 43/235 (18%) Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDRV----MSNIYEHLIRRFGSEVSEGAEDFM 178 +L K L + + I + + + + + YE + + Sbjct: 58 NKLNKYANKSLKGVHNHQELILKYLKILENSSDLERLGSYYEE---ELSNTTRNLEGIYY 114 Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 TP +V L P D ++ DP G+G F+ A+ Sbjct: 115 TPNKIVE---QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALKL---------GFK 157 Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298 + +G + + A+ +R++ D NI Q T +F +N Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTN 209 Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 PP+GKK+ +++ + K L + D + LF + N L+ + G Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFIVSLNCLKENAHLG 255 >gi|213026940|ref|ZP_03341387.1| hypothetical protein Salmonelentericaenterica_32695 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 203 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 27/172 (15%) Query: 119 DFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 F + ++ A L+ + ++ D +L + E Sbjct: 41 KFYNQFDTEIIDTANLISLEIQKQPLTDVFNRIFEDC-------YLTGK----KGEWLGQ 89 Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F+TP + + + D + + D GTG L + + + + Sbjct: 90 FLTPNRLAEAISRFVGWEKD--------IKYNIGDCCAGTGSLLFPLLREIHSKEGYEGV 141 Query: 237 PPILVPHGQELEPETHAVCVA----GMLIRRLESDPRRDLSKN-IQQGSTLS 283 I + + E++P + +A M L+ N I + T+S Sbjct: 142 QKIELLY-NEIDPLMAQLFMAQILTNMTYHNLDFKSLHVYIGNAITEYDTVS 192 >gi|166033468|ref|ZP_02236297.1| hypothetical protein DORFOR_03194 [Dorea formicigenerans ATCC 27755] gi|166026653|gb|EDR45410.1| hypothetical protein DORFOR_03194 [Dorea formicigenerans ATCC 27755] Length = 2640 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 64/260 (24%), Gaps = 58/260 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + S T V+ + + +P+ G G F Sbjct: 1386 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1437 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+P + + + +I G Sbjct: 1438 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1473 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG+ DK + Sbjct: 1474 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFSIHNY--------------------FF 1513 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402 K GG A V + +S +RR+L + + + LP D F Sbjct: 1514 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1568 Query: 403 IATYLWILSNRKTEERRGKV 422 I+ +K + V Sbjct: 1569 AEVVSDIIFLQKRDRPLDIV 1588 >gi|331004614|ref|ZP_08328079.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410483|gb|EGG89913.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107 str. F0167] Length = 2541 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 109/384 (28%), Gaps = 70/384 (18%) Query: 44 LECALEPTRSAVREKYLAFGG-SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 L+ + T EK + ++ ES + T + N E Sbjct: 1549 LDFEILSTEEKSPEKSVDKEDLPVLNKESLSETLKQEDVYTGREHTKNIIPANYSITRED 1608 Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKA------GLLYKICKNFSGIELHPDTVP---DR 153 + + S+ K E + + + +L K ++ + Sbjct: 1609 EVLAPSERLKNNIEAIKVLKRLNKENRNASKEEQDILSKYVGWGGLSDVFDEERGGQWQE 1668 Query: 154 VMSNIYEHL-IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + E+L + + + F TP+ V+ + + +P Sbjct: 1669 ARGFLKENLSLSEYEAAKESTLTAFYTPKVVIDAIYH--------TLSDMGFESGNILEP 1720 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 + GTG F+ + +G EL+ + + + Sbjct: 1721 SMGTGRFIGNL----------PGSMQNSKFYGIELDSISGQIAK------------KLYP 1758 Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 NIQ + F+ F + N PFG D ++E++ Sbjct: 1759 HSNIQV-KGFEETAFSNNLFDIAIGNVPFG-----DYRVSDREYEKN------------- 1799 Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 + L + K G A + SS + +IRR++ E + Sbjct: 1800 --NFLIHDYFFAKTLDKVRSKGIIAFITSSGTMDKRN-----EDIRRYISERAEFLGAIR 1852 Query: 393 LPTDLF---FRTNIATYLWILSNR 413 LP + F T + + + L R Sbjct: 1853 LPNNTFKGEAGTEVTSDIIFLKKR 1876 >gi|197294412|ref|YP_001798953.1| Putative N6 adenine-specific DNA methyltransferase fragment [Candidatus Phytoplasma australiense] gi|171853739|emb|CAM11662.1| Putative N6 adenine-specific DNA methyltransferase fragment [Candidatus Phytoplasma australiense] Length = 212 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 73/258 (28%), Gaps = 66/258 (25%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + + R +E TP V +L + DP G G Sbjct: 1 MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L P L D + N+ Sbjct: 52 LL---------------PWQQKGFD------------------VLRVDIEKTTFPNLIHN 78 Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + L++ ++ ++NPPF ++ + K GR P LP+ L Sbjct: 79 NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395 +L + IVL + F S S+ + L + I +I++LP Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178 Query: 396 DLFFRTNIATYLWILSNR 413 D+F + + I + Sbjct: 179 DVFENVVFHSEILIFNVN 196 >gi|325853075|ref|ZP_08171224.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A] gi|325484449|gb|EGC87370.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A] Length = 1127 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 41/178 (23%) Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189 NF+ E P+ ++ ++E+L+ + E E + F TPR++V+ Sbjct: 388 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 447 Query: 190 --LLLDPDDALFKE--------------------SPGMIRTLYDPTCGTG----GFLTDA 223 + +D + + DP CG+G G L Sbjct: 448 SLMAYLGNDETVRSVFSRDFIYDKSKADEYKSIVERLKNVKVLDPACGSGAFPMGLLNKM 507 Query: 224 MNHVADCGSHHKIPP------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + I +G +++ + I + + + N Sbjct: 508 VEVIERISPEEDIYSLKLSIIEKCLYGSDIQSIAAQITKLRFFISLICDCVKDETKPN 565 >gi|76802572|ref|YP_327580.1| restriction/modification enzyme [Natronomonas pharaonis DSM 2160] gi|76558437|emb|CAI50028.1| probable restriction/modification enzyme [Natronomonas pharaonis DSM 2160] Length = 1342 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 26/137 (18%) Query: 172 EGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIR--------TLYDPTCGTGGFLTD 222 + + T +V L P + +++ T+ DP G+G FL Sbjct: 491 KETGSYYTDPGLVQELVQSSLKPVVEDRLEDATTTDEQEDALLDITVCDPASGSGAFLIA 550 Query: 223 AMNHVADCGSHHKIPPI----------------LVPHGQELEPETHAVCVAGMLIRR-LE 265 A N +A + + + +L P + + I +E Sbjct: 551 ANNFLAQRLARIRSDSNYPPEDQIRRARRDVLQHCIYAVDLNPMAVELAKVSLWINSAVE 610 Query: 266 SDPRRDLSKNIQQGSTL 282 P L +I+ G++L Sbjct: 611 DKPLNFLDHHIKCGNSL 627 >gi|322418818|ref|YP_004198041.1| hypothetical protein GM18_1296 [Geobacter sp. M18] gi|320125205|gb|ADW12765.1| hypothetical protein GM18_1296 [Geobacter sp. M18] Length = 574 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 32/206 (15%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 + +E T +VV L+ D P L +P+CG G FL + Sbjct: 28 AATGAESRGAIYTRSEVVDFILDLVGYTAD-----KPLQQYRLLEPSCGEGDFLRPVLRR 82 Query: 227 VA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 + + + H AV VA ++ + DL+ Sbjct: 83 LLASWRRFGTSTDAIADLGEAIRAVELHRDTFHATRPAV-VAQLIEEGVAPSTAEDLADR 141 Query: 276 -IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPGLPKI 331 + +G L L +F + + NPP+ + E + E++N R +P Sbjct: 142 WLTRGDFLLSPL--DGQFDFVVGNPPY-VRQELIPAPLLAEYRNRFETMYDRADLYVP-- 196 Query: 332 SDGSMLFLMHLANKLELPPNGGGRAA 357 F+ + L + G A Sbjct: 197 ------FIERSLSFLAPGGSLGFICA 216 >gi|227892053|ref|ZP_04009858.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227866163|gb|EEJ73584.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length = 1084 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 23/211 (10%) Query: 87 SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146 L N + ++ NA I + L+ + I ++ I + Sbjct: 302 DLLEQSPNNIKKLFSQVEDGYTFNASNIINLIEGDFFSWYLDDSIWSESIAQSIKSILVK 361 Query: 147 PDTVPDRVMSNIYEHL-------IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199 ++ D +S +E L + V + + TP + L+ D Sbjct: 362 INSYSDASLSYQFETLDLFKELYMNVMPQPVRKAFGEVFTPDWLADNVVTTCLEMIDNEQ 421 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPILVPHGQELEPETH 252 T DPT G+G F+ A+ + + + + HG +L P + Sbjct: 422 -------WTFLDPTSGSGTFVFKAIEKIVERLLLDGRSNKYILEQILSRVHGIDLSPLSV 474 Query: 253 AVCVAG--MLIRRLESDPRRDLSKNIQQGST 281 + IR D ++ I G + Sbjct: 475 LTARVSFLLAIRPFIDDNNMEIEIPIYLGDS 505 >gi|21673985|ref|NP_662050.1| type III restriction system methylase [Chlorobium tepidum TLS] gi|21647130|gb|AAM72392.1| type III restriction system methylase [Chlorobium tepidum TLS] Length = 214 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 29/132 (21%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VA 228 + TP +V L+ D + + +P CG+G FL + V Sbjct: 12 DHGEVFTPAWLVEAMIDLVKDE-------TERIDARFLEPACGSGNFLVPILQRKLAAVE 64 Query: 229 DCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSK------- 274 +G EL + A C A ML + + + Sbjct: 65 RKFGKSNFEKQHYALFAVMCTYGIELLADNIAECRANMLEIFADYLTLDESDELYRAAIY 124 Query: 275 ----NIQQGSTL 282 N+ G L Sbjct: 125 VLSQNLVHGDAL 136 >gi|260940781|ref|XP_002615230.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720] gi|238850520|gb|EEQ39984.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720] Length = 248 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 36/177 (20%) Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 + D CG GG + G G ++ + +++ Sbjct: 75 ENILDVCCGGGGNTIQFAKIFKNVG------------GVDVNANNIKCSQHNSTVYGVDA 122 Query: 267 DPRRDLSKNIQQGSTLSKD------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320 + + LS+D +F + +PP+G K + + Sbjct: 123 NTWFVQGD----WNKLSEDSSWIPVDLPNGKFDFIFCSPPWGGPNYKKQQWFDLFSMEPF 178 Query: 321 LGR------------FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 R FG LP+ SD + + ++++L + + SPL Sbjct: 179 NLRQLCHSLRKFSDHFGLFLPRNSD--LDQIRQVSHELFGDKYKTRVVCLWQNGSPL 233 >gi|149003812|ref|ZP_01828640.1| hypothetical protein CGSSp14BS69_03093 [Streptococcus pneumoniae SP14-BS69] gi|147758146|gb|EDK65149.1| hypothetical protein CGSSp14BS69_03093 [Streptococcus pneumoniae SP14-BS69] Length = 202 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + L+ AI L+ S L ++ WL E + A+++LP + Sbjct: 97 LLMEQGLKYLKSDGY-----AIFLAPSNLLTSPQS---DLLKEWLKEEASLVAMISLPEN 148 Query: 397 LFFRTNIATYLWILSNR 413 LF + ++IL + Sbjct: 149 LFANAKQSKTIFILQKK 165 >gi|296444700|ref|ZP_06886663.1| hypothetical protein MettrDRAFT_0379 [Methylosinus trichosporium OB3b] gi|296257648|gb|EFH04712.1| hypothetical protein MettrDRAFT_0379 [Methylosinus trichosporium OB3b] Length = 230 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 3 EFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLE-CALEPTRS 53 A + A+ L K +++ + +L LR + C E + Sbjct: 71 HMASDDAETERRLRSVADQLRANSGLKPSEYSRPVLDLLFLRYADGCFAEAEKQ 124 >gi|294810252|ref|ZP_06768915.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|294442525|gb|EFG11329.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] Length = 647 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%) Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184 GLL + + NF+ E P+ V ++ I+E+L+ E ++ F TP+++V Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406 Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217 + D + E I + DP G+G Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466 Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 F + N V + + + +G ++E + + + Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526 Query: 266 SDPRRDLSKN----IQQGSTLSK 284 + + N I QG++L + Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549 >gi|330825863|ref|YP_004389166.1| DEAD-like helicase [Alicycliphilus denitrificans K601] gi|329311235|gb|AEB85650.1| DEAD-like helicase [Alicycliphilus denitrificans K601] Length = 1680 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 68/274 (24%), Gaps = 60/274 (21%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S + T ++ + + + +P G G FL Sbjct: 172 DYASARASVNNSHYTEVHMIEAMWQAV--------ERFGFTGGRVLEPAAGVGHFLGAMP 223 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +A+ E++ + + A + K Sbjct: 224 RSLAE---------RSAVTAIEIDRLSGRMLQALYAPHGADVRIAP-----------FEK 263 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F + N PFG D RF +I + Sbjct: 264 VALPENWFDLVIGNVPFGNYPAADAGP-------KPYARF-----RIHNY------FFGR 305 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---T 401 L+L GG I + + A +R ++ + + LP F T Sbjct: 306 ALDLVRPGGLVCFITSTGTMEARDDA------VREYVASQAKLLGAIRLPRGAFAGLAST 359 Query: 402 NIATYLWILSNRKTEE-----RRGKVQLINATDL 430 ++ T + L R E +V + + Sbjct: 360 DVQTDILFLGKRHPGEAVSGAWMERVLVPDGLRH 393 >gi|322378973|ref|ZP_08053383.1| hypothetical protein HSUHS1_0613 [Helicobacter suis HS1] gi|321148599|gb|EFX43089.1| hypothetical protein HSUHS1_0613 [Helicobacter suis HS1] Length = 1287 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 8/115 (6%) Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 I+ P + +Y + + + + F TP + L + Sbjct: 451 NIKEKPKSTQHYTQGQLYL----KNSANSRKSSGSFYTPEKITKELVKQALVGLNDANIL 506 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 + + D CG+G FL ++++ V+ + + P + QE + + Sbjct: 507 N----FKILDNACGSGAFLIESLHQVSQRALNGEFPSLKPLLEQEKQIVEEQIKK 557 >gi|260437990|ref|ZP_05791806.1| putative type I restriction enzyme methylase protein [Butyrivibrio crossotus DSM 2876] gi|292809617|gb|EFF68822.1| putative type I restriction enzyme methylase protein [Butyrivibrio crossotus DSM 2876] Length = 44 Score = 40.0 bits (92), Expect = 1.6, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 6 GSAASLANFIWKNAEDLWGDFKHTDF 31 + A A IW A+ L G FK ++ Sbjct: 12 TNIAEKAQVIWNVADMLRGPFKPHEY 37 >gi|83311143|ref|YP_421407.1| Type II restriction enzyme [Magnetospirillum magneticum AMB-1] gi|82945984|dbj|BAE50848.1| Type II restriction enzyme [Magnetospirillum magneticum AMB-1] Length = 1198 Score = 40.0 bits (92), Expect = 1.6, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%) Query: 51 TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASF 107 + V E L + + + + + +NL + Sbjct: 130 DKEKVIELKLDGTKEGDLYRMLLMAQCNALNSAMPFLFERIDDETELLLPDNLLHSDSVI 189 Query: 108 SDNAKAIFED----FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163 I E + + + + ++ E P + I ++++ Sbjct: 190 RQMVIEIEEADWQEIEIIGWLYQFYISEKKDQVIGKVVKSEDIPAATQLFTPNWIVKYMV 249 Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-----------KESPGMIRTLYDP 212 + + ++ + P+ + ++P + KE T DP Sbjct: 250 Q--NTLGAKWLATY--PQSGIRAKMEFYIEPAEQTDGVNTKLAEITPKELNPEEITFLDP 305 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV--------PHGQELEPETHAVCVAGMLIRRL 264 CG+G L +A + D V G +++ + +L++ Sbjct: 306 ACGSGHILVEAYDLFKDIYLERGYVLRDVPRLILEKNLFGLDVDDRAAQMAAFALLMKAR 365 Query: 265 ESD 267 D Sbjct: 366 NDD 368 >gi|326437370|gb|EGD82940.1| hypothetical protein PTSG_03573 [Salpingoeca sp. ATCC 50818] Length = 1612 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 42/165 (25%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 G T+ DP CG+ L +A+ + HG + P+ + Sbjct: 1398 GPGATVLDPFCGSATILLEAL---------AASGGSITCHGVDYSPKAIRGATQNAKMEG 1448 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 + R TL+K LF F ++NPP+G + + D V Sbjct: 1449 VLDKCRFHKGD----ARTLTK-LFEPASFDAIITNPPWGVRSGQSTDLV----------- 1492 Query: 324 FGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 + +FL A ++ GGR + L + LF Sbjct: 1493 -----------QLYTIFLQDAARIIKP----GGRMVVFLLKAMLF 1522 >gi|152974193|ref|YP_001373710.1| ABC-2 type transporter [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022945|gb|ABS20715.1| ABC-2 type transporter [Bacillus cytotoxicus NVH 391-98] Length = 940 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 14/123 (11%) Query: 26 FKHTDFGKVILPFTL-LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN-- 82 + F ++ LE T V E+Y +S ++ A F N Sbjct: 453 IDQAE-KDYNETFVADYKKAVSTLEQTSDKVNEEYNKVRQQYEQTKSILQKAKEDFENKG 511 Query: 83 TSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIFEDFDFSSTIARLEKAGL 132 + + + + + ++ + S + + D +F++ IA+L+KA Sbjct: 512 INGLDSTKVALNSLNSQFQAASNMITDMIPVLESANKVFADVNSDKNFNNQIAKLKKAQS 571 Query: 133 LYK 135 L + Sbjct: 572 LLQ 574 >gi|282851933|ref|ZP_06261293.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|282556942|gb|EFB62544.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] Length = 187 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%) Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI-RRWLLENDLIEAIVALP 394 M FL H + + +AAI++ S AGSG+S I + +L+N+ + A + +P Sbjct: 1 MPFLAHGLRFMSNKEHA--KAAIIIQDS------AGSGKSRITNQEILKNNTLLASIKMP 52 Query: 395 TDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 DLF + T ++I + V+ I+ RN+G KR + + Sbjct: 53 YDLFVPNAIVNTSIYIFEVGVPHDFDRSVKFID-------FRNDGYKRTKRGIKEISKPA 105 Query: 454 DIYVS 458 Y Sbjct: 106 HRYQD 110 >gi|331002100|ref|ZP_08325619.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411194|gb|EGG90610.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107 str. F0167] Length = 2661 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 72/248 (29%), Gaps = 59/248 (23%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ + + + +P+ G G F+ + + + Sbjct: 941 FYTPKVVIDSIYS--------ALSDMGFKSGNILEPSMGIGNFVGNLSDEMKSSK----- 987 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G EL+ + + + I+ L + F+ F + Sbjct: 988 -----FYGVELDSVSGRIGKL----------LYPESDIQIKG---LEETSFSNNFFDVAI 1029 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D++ + + K GG Sbjct: 1030 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1069 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +RR+L + LP D F T + + + L R Sbjct: 1070 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1124 Query: 414 KTEERRGK 421 + R + Sbjct: 1125 DSIRERDE 1132 >gi|57641093|ref|YP_183571.1| endonuclease-methyltransferase fusion protein [Thermococcus kodakarensis KOD1] gi|57159417|dbj|BAD85347.1| predicted endonuclease-methyltransferase fusion protein [Thermococcus kodakarensis KOD1] Length = 1125 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 37/227 (16%) Query: 38 FTL--LRR-LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94 RR T +++ +G D E +++Y L L + Sbjct: 196 MLFEDWRRIFSQVCSYTPEKLKKLAEFYGFKEADPERLTFAL-HTYYTL----LMKLIVS 250 Query: 95 NTRNNLESYIAS-----FSDNAKAIFEDFDFSSTIARLEKAGLLYKI-CKNFSGIE---L 145 + L + +++ + E F F + LE GL ++ +NF + Sbjct: 251 EIVSVLSEGLTGSVLARLNESYLSDVESFRF--VLTELEDGGLFRQLGIRNFLEADYFAW 308 Query: 146 HPDTVPDRVMSNIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLL 192 + + V +YE ++ + + PR++ H Sbjct: 309 YLEEWSGEVARAVYEITKALMDYEPATVEQTPERVEDLFKRLYQNLVPREIRHSLGEYFT 368 Query: 193 DPDDALFKESP-----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 A + + DP CG+G FL A+ + G H Sbjct: 369 PDWLAELTLDEAGYDGNPEKRVLDPACGSGTFLVLAIKRAKEWGLRH 415 >gi|270620566|ref|ZP_06221875.1| HaeIV restriction/modification system [Haemophilus influenzae HK1212] gi|270317737|gb|EFA29129.1| HaeIV restriction/modification system [Haemophilus influenzae HK1212] Length = 294 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 K + + G A IVL SS L NG + R LL++ + AI + F + Sbjct: 18 FFIEKAKQLLHAKGIAVIVLPSSILTNGNI---YIKCREILLQHFDLVAIAEFGSGTFSK 74 Query: 401 TNIATYLWILSNR 413 T T L + Sbjct: 75 TGTNTATLFLRRK 87 >gi|223985013|ref|ZP_03635111.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM 12042] gi|223962985|gb|EEF67399.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM 12042] Length = 2945 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 67/260 (25%), Gaps = 58/260 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + S T V+ + + +P+ G G F Sbjct: 1388 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1439 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+P + + + +I G Sbjct: 1440 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1475 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG+ DK + F Sbjct: 1476 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFNIHNY----------------FFAKAL 1519 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402 N++ GG A V + +S +RR+L + + + LP D F Sbjct: 1520 NQVRP----GGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1570 Query: 403 IATYLWILSNRKTEERRGKV 422 I+ +K + V Sbjct: 1571 AEVVSDIIFLQKRDRPLDIV 1590 >gi|167762375|ref|ZP_02434502.1| hypothetical protein BACSTE_00729 [Bacteroides stercoris ATCC 43183] gi|167699481|gb|EDS16060.1| hypothetical protein BACSTE_00729 [Bacteroides stercoris ATCC 43183] Length = 541 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 21/166 (12%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + +Y + S + F TP + + + D++ ++ DP Sbjct: 44 DRIGRLYTDTV---TSAFKKSNGQFFTPVSIAYFMGKQISVNKDSV---------SVLDP 91 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPR 269 CGT + ++ +I + + L P V + + D R Sbjct: 92 GCGTAILSCAMIENLVLQSKVKQIELVTYETDENLIPGLQKVLEYITIWGMRHNVRIDCR 151 Query: 270 RDLSKNI------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 I T+ + +++ +SNPP+ K ++DK Sbjct: 152 SYCEDFILSNYSVLYSDTIYGRAESLQKYDLIISNPPYFKLSKEDK 197 >gi|134044465|ref|YP_001101751.1| hypothetical protein YR71pYR1_0057 [Yersinia ruckeri] gi|133904828|gb|ABO40845.1| hypothetical protein YR71pYR1_0057 [Yersinia ruckeri] Length = 211 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 16/115 (13%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +G F TP ++ L + ++ Y+P CG+G +A++ + + Sbjct: 89 KKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIHWMENL 135 Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +H + + ++++P C L ES + +I TLS Sbjct: 136 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPKTLSIVGIDTLS 189 >gi|134044860|ref|YP_001102142.1| hypothetical protein YpIP275_pIP1202_0078 [Yersinia pestis biovar Orientalis str. IP275] gi|134047269|ref|YP_001101931.1| hypothetical protein SNSL254_pSN254_0052 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165938006|ref|ZP_02226566.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|237640241|ref|YP_002891096.1| hypothetical protein peH4H_0053 [Escherichia coli] gi|237809961|ref|YP_002894400.1| hypothetical protein pAR060302_0054 [Escherichia coli] gi|237810149|ref|YP_002894588.1| hypothetical protein pAM04528_0052 [Salmonella enterica] gi|258624193|ref|ZP_05719143.1| putative type I restriction-modification system methyltransferase subunit [Vibrio mimicus VM603] gi|300925691|ref|ZP_07141550.1| hypothetical protein HMPREF9548_03746 [Escherichia coli MS 182-1] gi|309796414|ref|ZP_07690822.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|133905188|gb|ABO41203.1| hypothetical protein SNSL254_pSN254_0052 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905394|gb|ABO42156.1| hypothetical protein YpIP275_pIP1202_0078 [Yersinia pestis biovar Orientalis str. IP275] gi|165914029|gb|EDR32646.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|229561460|gb|ACQ77663.1| conserved hypothetical protein [Escherichia coli] gi|229561633|gb|ACQ77835.1| conserved hypothetical protein [Salmonella enterica] gi|229561816|gb|ACQ78017.1| conserved hypothetical protein [Escherichia coli] gi|258583624|gb|EEW08423.1| putative type I restriction-modification system methyltransferase subunit [Vibrio mimicus VM603] gi|300418192|gb|EFK01503.1| hypothetical protein HMPREF9548_03746 [Escherichia coli MS 182-1] gi|308119919|gb|EFO57181.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|324007651|gb|EGB76870.1| hypothetical protein HMPREF9532_02674 [Escherichia coli MS 57-2] gi|327536494|gb|AEA95327.1| hypothetical protein pSD853_174_61 [Salmonella enterica subsp. enterica serovar Dublin] gi|332144503|dbj|BAK19723.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 211 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 16/115 (13%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +G F TP ++ L + ++ Y+P CG+G +A++ + + Sbjct: 89 KKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIHWMENL 135 Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +H + + ++++P C L ES + +I TLS Sbjct: 136 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPKTLSIVGIDTLS 189 >gi|118601922|ref|YP_908622.1| hypothetical protein P91278ORF_024 [Photobacterium damselae subsp. piscicida] gi|118614660|ref|YP_908443.1| hypothetical protein P99018ORF_032 [Photobacterium damselae subsp. piscicida] gi|229516143|ref|ZP_04405592.1| hypothetical protein VCC_000158 [Vibrio cholerae RC9] gi|118596751|dbj|BAF38055.1| hypothetical protein P99018ORF_032 [Photobacterium damselae subsp. piscicida] gi|118596931|dbj|BAF38234.1| hypothetical protein P91278ORF_024 [Photobacterium damselae subsp. piscicida] gi|229346793|gb|EEO11762.1| hypothetical protein VCC_000158 [Vibrio cholerae RC9] Length = 222 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 16/115 (13%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 +G F TP ++ L + ++ Y+P CG+G +A++ + + Sbjct: 100 KKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIHWMENL 146 Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 +H + + ++++P C L ES + +I TLS Sbjct: 147 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPKTLSIVGIDTLS 200 >gi|333030880|ref|ZP_08458941.1| hypothetical protein Bcop_1769 [Bacteroides coprosuis DSM 18011] gi|332741477|gb|EGJ71959.1| hypothetical protein Bcop_1769 [Bacteroides coprosuis DSM 18011] Length = 1208 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 66/259 (25%), Gaps = 42/259 (16%) Query: 53 SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112 ++ E ++I E + + + + R L + + Sbjct: 95 ESIPEILANAKAADISNELMSIAEKDKVLHVLDNTTGNPENEAYRLLLVAACNYLNKLFP 154 Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 +FE D + + + I + D ++ +Y+ I EVS Sbjct: 155 FLFEGIDDYTELLLPSDLTSPHSIISDVVEGMSEEDCSEVEIIGWLYQFYISERKDEVSG 214 Query: 173 GAE-----------DFMTPRDVVHLATA-----------------------LLLDPDDAL 198 TPR +V + + +D Sbjct: 215 ATGKVSKEDIPAVTQLFTPRWIVEYMVQNTLGKLWMQNFPNSSLKEKMPYYIETEQEDDF 274 Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPE 250 K S TL DP CG+G L A + +G E++ Sbjct: 275 LKISSPEELTLVDPACGSGHILVYAFELLTLIYEEEGYRRRDIAQLIIEKNLYGYEIDER 334 Query: 251 THAVCVAGMLIRRLESDPR 269 + + ++ D Sbjct: 335 AGQLASLAIYLKARSYDQG 353 >gi|289423818|ref|ZP_06425612.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius 653-L] gi|289155755|gb|EFD04426.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius 653-L] Length = 2917 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 74/271 (27%), Gaps = 59/271 (21%) Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + + F TP+ V+ D + +P+ G G Sbjct: 1166 LSEYEAARESTLTSFYTPKTVI--------DGIYKTLSGMGFKQGNILEPSMGIG----- 1212 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 N + + +G EL+ + + +IQ L Sbjct: 1213 --NFIGNLPDEMNKSK---FYGVELDSVSGRIGK------------LLYPESDIQV-KGL 1254 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + F+ F + N PFG+ D++ + Sbjct: 1255 EETGFSNNFFDIAIGNVPFGEYKVNDREYNRNNFLIHDY--------------------F 1294 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399 K GG A + +G + +RR+L + LP D F Sbjct: 1295 FAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVA 1349 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL 430 T + + + L R + R + + A D Sbjct: 1350 GTEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1380 >gi|257060036|ref|YP_003137924.1| hypothetical protein Cyan8802_2208 [Cyanothece sp. PCC 8802] gi|256590202|gb|ACV01089.1| conserved hypothetical protein [Cyanothece sp. PCC 8802] Length = 1218 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 17/164 (10%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316 A + + + + + L + F ++H ++NPP+ + + ++ Sbjct: 570 ANLWKKIPNPSLFEHKT-HEKVMDVLKQADFLSPKYHIVVANPPY-MGNKGMNNRLKAFL 627 Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376 ++ SD LF + LE+ G V +F S + Sbjct: 628 QDNYSNV-------KSD---LFSAFMIRILEMTLQKG-EMGFVTPYVWMF----ISSYEK 672 Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420 +R +LE I +++ L + F I + LSN+ +G Sbjct: 673 LRTLILEKTTITSLIQLEYNAFAPACIPVATFTLSNQNLPNFKG 716 >gi|208434933|ref|YP_002266599.1| adenine specific DNA methyltransferase [Helicobacter pylori G27] gi|208432862|gb|ACI27733.1| adenine specific DNA methyltransferase [Helicobacter pylori G27] Length = 2808 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 98/318 (30%), Gaps = 69/318 (21%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TP L + D L + + +++P+ GTG F+ +H Sbjct: 974 AYYTP----KLVIDSIYRALDQLGFNNDNHQKEIFEPSLGTGKFI-----------AHAP 1018 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL+P + ++ + L N +T ++ + + Sbjct: 1019 SDKNYRFMGTELDPTSASIS--------------QFLYPNQVIQNTALENHPFHQDYDAF 1064 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPP+G + E +++ FL +L+ G Sbjct: 1065 VGNPPYGNHKIYSSNDAELSNESVHNY---------------FLGKAIKELKD----NGI 1105 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 A V+ S F ++R + +N + LP +F T I+ +K Sbjct: 1106 GAFVV--SSWFMDAKNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKG 1160 Query: 416 EERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILDI---YVSRENG 462 ++ A + I N + + + +I++ + + Sbjct: 1161 VDKATNQSFTKAMPYYDKILNSLDDDTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQE 1220 Query: 463 KFSRML---DYRTFGYRR 477 K R D FGY+ Sbjct: 1221 KLQRWYEEIDTANFGYKE 1238 >gi|291533954|emb|CBL07067.1| N-6 DNA Methylase [Megamonas hypermegale ART12/1] Length = 59 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 8/48 (16%) Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ ++ D I TLS K F L+NPPFG K Sbjct: 1 MNAMLHDIDGD--------IMLADTLSNQGKALKDFDVVLANPPFGTK 40 >gi|305679811|ref|ZP_07402621.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|305660431|gb|EFM49928.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length = 490 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 30/132 (22%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + DF TP + +L P + +PTCG G FL A Sbjct: 3 NNEFGDFQTPLALARRCLEVLALPQHGPI--------RVLEPTCGRGAFLRAAKER---- 50 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 P + +G ++ + V + NI + L+ + Sbjct: 51 ------NPTSIRYGIDINADYVQVAR----------NYGTVAHANIFTRN-LTDISWPDP 93 Query: 291 RFH-YCLSNPPF 301 + + NPP+ Sbjct: 94 TAPLFVIGNPPW 105 >gi|224542975|ref|ZP_03683514.1| hypothetical protein CATMIT_02169 [Catenibacterium mitsuokai DSM 15897] gi|224524113|gb|EEF93218.1| hypothetical protein CATMIT_02169 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 28/150 (18%) Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211 D + IY L S + F TP V + + L D G L + Sbjct: 77 DDYLGKIYMEL-----STGNSHTGQFFTPFHVCEMMAGVALADYD-------GETEYLNE 124 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271 P+ G G + + G +++ + Q+L+ + + + + + ++ Sbjct: 125 PSSGGGANILAYAKVMKAKGYNYQRLLEVKA--QDLDYKCVYMTYVQLSLAGVNAE---- 178 Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 + QG++L + + L P + Sbjct: 179 ----VVQGNSL------EGKHNVVLHTPMY 198 >gi|81428910|ref|YP_395910.1| putative adenine-specific DNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|15212469|gb|AAK92004.1|AF400065_2 putative modification methylase LaaG [Lactobacillus sakei] gi|78610552|emb|CAI55603.1| Putative adenine-specific DNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 336 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 113/337 (33%), Gaps = 43/337 (12%) Query: 86 YSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144 + L +T NLE+ Y+ + +++ I + L A + ++ ++ Sbjct: 10 FDLIDQTTTLIEQNLETTYLDALTESIANIADGGRVKVE-DNLPDAQTVAQLETIYAT-- 66 Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204 + + + + + +V MTP + +L L A Sbjct: 67 VKLNQFDAETIRQALQLATLKGLRQVKVEPNKQMTPDAIGYLVAYL------AEVFGGAD 120 Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 I+T+ DP GTG L MNH+ + + L G + + + ++ L Sbjct: 121 QIKTVLDPVIGTGNLLATVMNHIQNLTGN-----KLQGFGVDNDDSLLELAGISSELQGL 175 Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324 ++ + + +++ P G ++ A + H Sbjct: 176 DTTLFHQDAIEPLMVN----------PVDIAVADLPIGFYPIDERAADFETHAASGH--- 222 Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 S L + + ++ GG ++ + L A ++ +W+ ++ Sbjct: 223 -------SYAHHLLIEQTMHYVKD----GGFGFFLVPNVILETDEA----KQLVKWITKH 267 Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 ++ +++LP +LF + +L + ++ K Sbjct: 268 VYLQGLLSLPVNLFKTKEGQKAILVLQKQGAGAQQAK 304 >gi|332296281|ref|YP_004438204.1| hypothetical protein Thena_1460 [Thermodesulfobium narugense DSM 14796] gi|332179384|gb|AEE15073.1| hypothetical protein Thena_1460 [Thermodesulfobium narugense DSM 14796] Length = 1108 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 17/125 (13%) Query: 77 GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIARLEKA----- 130 G F S+Y + + + D +F+ F+F+ LEK Sbjct: 321 GGLFEPFSDYDWKNIDLLIPNDLFS---NNNEDGILDVFDLFNFTVKEDEPLEKEVAVDP 377 Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE-VSEGAEDFMTPRDVVHLATA 189 LL KI + + I D + + L + ++ + TPR++VH Sbjct: 378 ELLGKIYEKLNAI--REDNFEEYKKA-----LKSKGSENRFNKEYGVYYTPREIVHFMAQ 430 Query: 190 LLLDP 194 L Sbjct: 431 SALVE 435 >gi|199597330|ref|ZP_03210761.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus HN001] gi|199591846|gb|EDY99921.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus HN001] Length = 337 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 51/337 (15%), Positives = 96/337 (28%), Gaps = 51/337 (15%) Query: 89 STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148 L ST+ E+ S + E L + P+ Sbjct: 22 QQLKSTDIAAITEAGEDLSSGEVMQ-------EDGLPNDEAKKKLEALFGQVKLATYEPE 74 Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208 + + ++ + +TP + LAT + +F + Sbjct: 75 -----EIRQALQLVLVKAIKVDGIEPNKQITPDAMASLATFMAT-----VFDQQQPSQLK 124 Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268 + D G+G L MN + H + + +G + + AV ++ L+ + Sbjct: 125 VADLAVGSGNLLFAVMNQL-----HKERDVTVKGYGVDNDEALLAVAGMSSSLQHLDVEL 179 Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 L D K +S+ P G ++ Sbjct: 180 F--------HQDAL--DGLLFKDIDVVVSDLPVGYYPVDERAKKFATAAKKGH------- 222 Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 S + + +++ GG + S +F +G + WL E + Sbjct: 223 ------SYAHHLLIEQSMKVLKPGG--LGMFYVPSRVFQSEEAAGLTA---WLAEKTYFQ 271 Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQL 424 ++ LP D F L IL + +R K V L Sbjct: 272 GLLNLPDDFFADKQAEKSLLILQKPSPDVKRAKQVLL 308 >gi|281204197|gb|EFA78393.1| RasGEF domain-containing protein [Polysphondylium pallidum PN500] Length = 942 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 70/228 (30%), Gaps = 46/228 (20%) Query: 27 KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86 +D +L L ++ +L+ + V E+ + ++E + + Sbjct: 519 DESDEADYLLGM--LSDIDGSLQAAKEKVEEESIQNSRLKSEIEDLF-AEKFILQIHLDS 575 Query: 87 SLSTLG-STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG---------LLYKI 136 L + + N + L+ + NAK + E + S +++++ L ++ Sbjct: 576 VLRNIDFNDNIGDMLKKNRELLNMNAKQLPEGVNSDSVKFKVDESNPEKFIILCATLDRL 635 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196 + + I + M +F + F++P +++ L Sbjct: 636 IERLTKI-------DNHDM---------KFANVFLLTFRRFVSPIELMELLI-------- 671 Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244 IR P L ++V+ + + + Sbjct: 672 ---------IRFCSTPAMELTTTLLQMDDYVSGWRTSKQDQLRISVFN 710 >gi|325971695|ref|YP_004247886.1| type III restriction protein res subunit [Spirochaeta sp. Buddy] gi|324026933|gb|ADY13692.1| type III restriction protein res subunit [Spirochaeta sp. Buddy] Length = 1632 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 91/315 (28%), Gaps = 43/315 (13%) Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167 S + + D + EK Y+ + ++ +V+ +Y+ + Sbjct: 816 SKAMQGMISILDEQTPKEDNEKLERFYESVAKRAE-DIDNAEAKQKVIVELYDKFFKTAF 874 Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNH 226 E TP ++V + D F S + DP GTG F+T + Sbjct: 875 PRTVERLGIVYTPVEIVDFILNSVEDILRKEFGRSLSDENIHILDPFTGTGTFITRLLQQ 934 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLS---------KN 275 + K + H E+ + + + + L+ + + D S + Sbjct: 935 GIISKDNLKRKYLKEIHANEIVLLAYYIASINIENVFHDLQIEQQHDKSVDAIDYIPFEG 994 Query: 276 IQQGST---------LSKDLFTGKRFH----------YCLSNPPFGKKWEKDKDAVEKEH 316 I T L ++F + NPP+ + D + + Sbjct: 995 ICLTDTFQLGEDNTILVNEVFPKNSQRVNSQKKTPLMVIVGNPPYSIGQKTANDDAQNQS 1054 Query: 317 KNGELGRFGPGLPKISDGSMLFLMH-------LANKLELPPNGGGRAAIVLSSSPLFNGR 369 R S G++ ++ + L + GG V + + L Sbjct: 1055 YPLLEERIMNTYATKSSGNLKKALYDSYVKAFRWSSDRLDADNGGIVGFVSNGAWLDGNS 1114 Query: 370 AGSGESEIRRWLLEN 384 R+ + E Sbjct: 1115 LDG----FRKCIEEE 1125 >gi|317505134|ref|ZP_07963075.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663747|gb|EFV03473.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 292 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 64/208 (30%), Gaps = 35/208 (16%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 ++ + IR DP+ G G F A G + + Sbjct: 111 IVSAISDALASTNLQIRRCLDPSMGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165 Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 H + ++ + +L ++ SN PFG D Sbjct: 166 LHPYGKGNIFVQNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206 Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 ++E+ G+ I + + K GG A + S L + R Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259 Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF 398 IRR+L++N + + + LP+ LF Sbjct: 260 E----AIRRYLMQNSRLISALRLPSSLF 283 >gi|297379675|gb|ADI34562.1| Modification methylase [Helicobacter pylori v225d] Length = 545 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 28/165 (16%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 D NI Q T +F +NPP+GKK+ +++ Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKE 222 >gi|145226108|ref|YP_001136762.1| hypothetical protein Mflv_5513 [Mycobacterium gilvum PYR-GCK] gi|145218571|gb|ABP47974.1| hypothetical protein Mflv_5513 [Mycobacterium gilvum PYR-GCK] Length = 934 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 61/249 (24%), Gaps = 60/249 (24%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPD-------DALFKESPGMIRTLY---------D 211 ++ + T + + L + K+ G++ L+ D Sbjct: 313 AQTRRELGEHYTSEENILKTLNPLFLDELRAEFDRARTMKDEKGVLTRLWKRLGDIRYMD 372 Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEPET 251 P CG G F+ A + D +G E++ Sbjct: 373 PACGCGNFIIVAFRELRDLELRIMERLQELAGASQLAFDPTLALKVTLDHFYGIEIDEWP 432 Query: 252 HAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTLSKDLF---TGKRFHYC 295 + M + + D + NI G+ L Sbjct: 433 ARIAETAMFLVDRQCDLKLKERFGEAPQRLPIQTQANITVGNALRLQWQELCPSSESVVV 492 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 NPP+ ++ E + G + + A + GR Sbjct: 493 AGNPPY-------LGKKQRTAAQTEDMQLVWGSAYSGEADYV-TAWFAKGADYFGAAVGR 544 Query: 356 AAIVLSSSP 364 A V ++S Sbjct: 545 LAFVTTNSV 553 >gi|311112269|ref|YP_003983491.1| hypothetical protein HMPREF0733_10599 [Rothia dentocariosa ATCC 17931] gi|310943763|gb|ADP40057.1| hypothetical protein HMPREF0733_10599 [Rothia dentocariosa ATCC 17931] Length = 1109 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 14/137 (10%) Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHL-IRRFGSEVSEGAEDFMTPRDVVHLATA 189 ++ + +N + ++L + + +I + + + +V ++ +P Sbjct: 361 DVINDVQENINKLDLATFKLKPETVQDILQEIYMSLIPDKVRHLLGEYFSP--------D 412 Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPILVPHG 244 +++ + + L DPTCG+G FL A+ V + G+ + G Sbjct: 413 WIVEHALDRVGYTGDIEARLIDPTCGSGAFLIQALKRVVSKKEYNIGTEDIKNIVNNIVG 472 Query: 245 QELEPETHAVCVAGMLI 261 +L P + A ++ Sbjct: 473 FDLNPISAISAKANYIL 489 >gi|284036876|ref|YP_003386806.1| type II restriction enzyme, methylase subunit [Spirosoma linguale DSM 74] gi|283816169|gb|ADB38007.1| type II restriction enzyme, methylase subunit [Spirosoma linguale DSM 74] Length = 918 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 24/129 (18%) Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPD-DALFKESPGMIRT------ 208 +I+ +I+ E A T + L D A E+ R Sbjct: 282 DIFGSMIQAVADEGERSALGMHYTSVPNILKVLNPLFLDDIRAQLDEAEDNSRKLLNLRK 341 Query: 209 ------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETH 252 ++DP CG+G FL A H+ + G EL + Sbjct: 342 RLSRIRVFDPACGSGNFLVIAYKHMREIEHEINKRRGETERPTDIPLTNFRGIELRDFSA 401 Query: 253 AVCVAGMLI 261 + ++I Sbjct: 402 EIARLALII 410 >gi|282600669|ref|ZP_05979374.2| SNF2 family protein [Subdoligranulum variabile DSM 15176] gi|282571763|gb|EFB77298.1| SNF2 family protein [Subdoligranulum variabile DSM 15176] Length = 2992 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 89/325 (27%), Gaps = 75/325 (23%) Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-H 161 F N KAI + + + A E+ +L + + P Sbjct: 1370 EKFWRNIKAIATLKQIEQENRYATPEEQHILSQYVGWGGLADAFDPDKPAWAAEYAELKE 1429 Query: 162 LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 L+ + + + T V+ ++ + +P+CG G F Sbjct: 1430 LLTPEEYEAARASTLNAHYTSPTVIRAIY--------DAVEQMGFRTGNILEPSCGVGNF 1481 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSK 274 + +G EL+ + + A + + E+ RRD Sbjct: 1482 FGMLPESM----------AGSRLYGVELDSISGRIAKQLYPKADITVAGFETTDRRDF-- 1529 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 + + N PFG+ DK +K G Sbjct: 1530 -----------------YDLAIGNVPFGQYQVNDKAY----NKLGFNI------------ 1556 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + K GG A V + +S +RR+L + + + LP Sbjct: 1557 ----HNYFFAKSLDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLP 1607 Query: 395 TDLF---FRTNIATYLWILSNRKTE 416 + F T + + + L R Sbjct: 1608 NNAFKANAGTEVVSDILFLQKRDRP 1632 >gi|331004624|ref|ZP_08328088.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409649|gb|EGG89086.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107 str. F0167] Length = 2532 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 55/415 (13%), Positives = 114/415 (27%), Gaps = 80/415 (19%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + F TP+ V+ + + +P+ GTG F+ + Sbjct: 1681 SEYEAAKESTLTAFYTPKVVIDAIYH--------TLSDMGFESGNILEPSMGTGRFIGNL 1732 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+ + + + + NIQ Sbjct: 1733 PESMQKSK----------FYGIELDSISGQIAK------------KLYPNANIQV-KGFE 1769 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F+ F + N PFG+ D++ + + Sbjct: 1770 ETAFSNNLFDIAVGNVPFGEYRVSDREYEKNNFLIHDY--------------------FF 1809 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K G A + SS + +IRR++ E + LP + F Sbjct: 1810 AKTLDKVRSKGVIAFMTSSGTMDKRN-----EDIRRYISERAEFLGAIRLPNNTFKGEAG 1864 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460 T + + + L R ++ I+ + +G D + +L Sbjct: 1865 TEVTSDIIFLKK------RDRLLKIDEDWVKLDKNRQGLSYNKYFVDNPQMVLG------ 1912 Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520 S FG + + + + ++ KL+ ++ L Sbjct: 1913 ----SMQEVPGRFGTTLACIADESKSIKEQLEDAIKNIKGTYEKAKLNEELETEILSADD 1968 Query: 521 PMMQQIYPYGWAESFVKES-----IKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570 + Y + F +E+ + N+A K+ A A + Sbjct: 1969 NVKNYSYAVIEDKVFFRENSIMQRLLLNKADEEKIGAYLEIEKALRGVITYQKED 2023 >gi|300814911|ref|ZP_07095142.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511001|gb|EFK38270.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 2848 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 59/391 (15%), Positives = 107/391 (27%), Gaps = 72/391 (18%) Query: 48 LEPTRSAVREKYLAFGGSNIDLE-SFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLES--Y 103 LE V E E K ++F T E L NNLE+ Sbjct: 985 LESDLERVFENLTYKQPEQTTEETQIRKAEAHNFKITEETLPEKLSPSERLNNNLEAVSM 1044 Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL- 162 + + + D +A+ G L ++ + + E+L Sbjct: 1045 LNRVESGEREL--DIAAQEVLAKYVGWGGLSEVFDESKDGQWKEARA------FLKENLS 1096 Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 + + + F TP+ V+ D + +P+ G G Sbjct: 1097 LSEYEAARESTLTSFYTPKTVI--------DGIYKTLSSMGFKQGNILEPSMGIG----- 1143 Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 N + + +G EL+ + + ++ Q L Sbjct: 1144 --NFIGNLPDEMNKSK---FYGVELDSVSGRIGK-------------LLYPESEVQVKGL 1185 Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342 + F+ F + N PFG+ D++ + Sbjct: 1186 EETSFSNNFFDVAIGNVPFGEYKVNDREYNRNNFLIHDY--------------------F 1225 Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399 K GG A + +G + +RR+L + LP D F Sbjct: 1226 FAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVA 1280 Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL 430 T + + + L R + R + + A D Sbjct: 1281 GTEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1311 >gi|253999778|ref|YP_003051841.1| hypothetical protein Msip34_2072 [Methylovorus sp. SIP3-4] gi|253986457|gb|ACT51314.1| hypothetical protein Msip34_2072 [Methylovorus sp. SIP3-4] Length = 255 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 15/156 (9%) Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187 + LL + F + + + +Y+ + + F+TP DV L Sbjct: 73 DNYKLLTQATGLFVNQFKTNEPFTNI-VGEMYDEYL-------GDVLGQFLTPNDVADLV 124 Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 L + + D CG+G + ++ ++ + + ++ Sbjct: 125 AELHFEKE-----PITKNKIIADDMGCGSGSLILASLRNILKNHGK-EALKHIELVAMDI 178 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + +C +++ L + + +TL+ Sbjct: 179 DMKMVQLCSIQIVLHCL-FHRIEINNLKMYWANTLT 213 >gi|146283764|ref|YP_001173917.1| type II restriction enzyme, methylase subunit [Pseudomonas stutzeri A1501] gi|145571969|gb|ABP81075.1| type II restriction enzyme, methylase subunit [Pseudomonas stutzeri A1501] Length = 1635 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 23/144 (15%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I R E + + TP + L + T+ +P G+ FL Sbjct: 550 FIYRLAGRAREKSASYYTPEVLTQCLVEHALKEILPGKTADEILQLTICEPAMGSAAFLN 609 Query: 222 DAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVCVAGM 259 +A+N +A+ K G +L P + + Sbjct: 610 EAVNQLAEAYLQAKQKELGQSIPHEQYTEEKQRVKMYIADSNVFGVDLNPIAVELAEVSL 669 Query: 260 LIRRL-ESDPRRDLSKNIQQGSTL 282 + + + + G++L Sbjct: 670 WLNAIFKGSHVPWFGLQLYNGNSL 693 >gi|332828307|gb|EGK01019.1| hypothetical protein HMPREF9455_02808 [Dysgonomonas gadei ATCC BAA-286] Length = 377 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 90/275 (32%), Gaps = 43/275 (15%) Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKRRIINDDQRRQ 451 L+F N + + + E +G V + D+ + N +K + + R Sbjct: 81 LYFNKNTKSTFVLANKGWKVELKGDVLYPDLIDVKGGDVNDDLTNFKEKNKTLLK-SRAD 139 Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP------------------LRMSFILDKT 493 IL+ + S ++ + I L +F D+T Sbjct: 140 ILNTAEKNIKNEDSLVVKDYVVELKNINFELSNIAAAYVKANPDKIASVMLINTFFKDET 199 Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553 + RL+ +++ K + + LK +I SIK+ + KT+++ Sbjct: 200 SIPRLDENLSLLKGKAIDFPLTAE-LKSFRDKIKLSAVNAYAPGFSIKNIQDKTVQLSDF 258 Query: 554 KSFIVAFINAFGR----KDPRAD------PVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603 + V + A +D + D + + + + E VP E+I D Sbjct: 259 RGKYVLLLFAATTCDVCRDEKQDAIDVYNELKKQKKNIEFISIVKDSEQVPLSENIADSV 318 Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638 + P V + K F + EI +N Sbjct: 319 KWNILP-VKGGWAAKPFDTYYIR-------EIPYN 345 >gi|260887938|ref|ZP_05899201.1| putative restriction enzyme [Selenomonas sputigena ATCC 35185] gi|260862338|gb|EEX76838.1| putative restriction enzyme [Selenomonas sputigena ATCC 35185] Length = 846 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 27/201 (13%) Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 +L R + R + IQQ S +++ ++NPP+ E K Sbjct: 463 NLLFRAWIDEVERRILPLIQQAKVFS------QKYDVIVTNPPYLGSTRFSFKLNEYVKK 516 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 SD SM+ L L+ G A V ++S + + S ++ Sbjct: 517 YFPNE--------KSDLSMVMLKK---SLQETAKTNGYVAFVTTASWM----SLSSFEKL 561 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYL--WILSNRKTEERRGKVQLIN--ATDLWTS 433 R ++ ++ I+ +V T+LF + W++ K R V+L++ + Sbjct: 562 RSYMYKDCAIDTLVDCGTELFEGKVGHNSIVSWVVRKTKFNYRMTAVRLVDYCYSRRDEK 621 Query: 434 IRNEGKKRRII--NDDQRRQI 452 K+ + +I Sbjct: 622 EVEFFNKKNYFVATQENFSKI 642 >gi|225870148|ref|YP_002746095.1| helicase [Streptococcus equi subsp. equi 4047] gi|225699552|emb|CAW93149.1| putative helicase [Streptococcus equi subsp. equi 4047] Length = 2913 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 61/397 (15%), Positives = 108/397 (27%), Gaps = 84/397 (21%) Query: 48 LEPTRSAVREKYLAFGGSNI-DLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESY-- 103 LE V E I K ++F T E L NNLE+ Sbjct: 1051 LESDLERVFENLTYKKPETIAKESEIKKAEAHNFKITEETLPDKLSPSERLNNNLEAISM 1110 Query: 104 ---IAS----FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156 I S F A+ + + +A + + + S ++ + Sbjct: 1111 LSRIESGQREFDSTAQEVLARYVGWGGLADVFDEEKGGQWKEARSFLKENLSQAE----- 1165 Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 YE + F TP+ V+ D + + +P+ G Sbjct: 1166 --YE-------AARESTLTSFYTPKTVI--------DGVYKTLSDMGFKSGNILEPSMGI 1208 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G N + + +G EL+ + + + I Sbjct: 1209 G-------NFIGNLPDEMNKSK---FYGVELDSISGRIGKL----------LYPESDIQI 1248 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336 + L + F+ F + N PFG+ D++ + Sbjct: 1249 KG---LEETSFSNNFFDVAIGNVPFGEYKVNDREYNRNNFLIHDY--------------- 1290 Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 K GG A + +G + +RR+L + LP D Sbjct: 1291 -----FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPND 1340 Query: 397 LF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430 F T + + + L R + R + + A D Sbjct: 1341 TFKGTAGTEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1377 >gi|210635262|ref|ZP_03298474.1| hypothetical protein COLSTE_02405 [Collinsella stercoris DSM 13279] gi|210158480|gb|EEA89451.1| hypothetical protein COLSTE_02405 [Collinsella stercoris DSM 13279] Length = 876 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 32/144 (22%), Gaps = 31/144 (21%) Query: 129 KAGLLYKICKNFSGIELH-------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181 + +L+ + + + + + + R+ E A TP Sbjct: 191 EHDVLFHLVADIPEEAWDDVEVLGWMYQFYNSELKDDFFKSKRKAAVEDLAPATQLFTPD 250 Query: 182 DVVHLATALLL------------------------DPDDALFKESPGMIRTLYDPTCGTG 217 +V L + T DP CG+G Sbjct: 251 WIVRYMVENSLGRLWMLNNPGSRLREGMAYYIEPDAGHEDFIHIEGPEDITFCDPACGSG 310 Query: 218 GFLTDAMNHVADCGSHHKIPPILV 241 L A + + V Sbjct: 311 HILVYAFELLFRMYAERGYRERDV 334 >gi|160946660|ref|ZP_02093863.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270] gi|158447044|gb|EDP24039.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270] Length = 2913 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 75/258 (29%), Gaps = 59/258 (22%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP+ V+ D + + +P+ G G F+ + + + Sbjct: 1182 AFYTPKAVI--------DGVYRTLSDMGFKSGNILEPSMGVGNFIGNLPDEM-------- 1225 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G EL+ + + + I+ L + F+ F Sbjct: 1226 --SKSKFYGVELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDVV 1270 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + N PFG+ D++ + + K GG Sbjct: 1271 IGNIPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGI 1310 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412 A + +G + +RR+L + LP D F T + + + L Sbjct: 1311 IAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKK 1365 Query: 413 RKTEERRGKVQLINATDL 430 R + R + + A D Sbjct: 1366 RDSIRERDEDWIHLAEDE 1383 >gi|225020176|ref|ZP_03709368.1| hypothetical protein CORMATOL_00177 [Corynebacterium matruchotii ATCC 33806] gi|224946920|gb|EEG28129.1| hypothetical protein CORMATOL_00177 [Corynebacterium matruchotii ATCC 33806] Length = 490 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 30/132 (22%) Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 + DF TP + +L P + +PTCG G FL A Sbjct: 3 NNEFGDFQTPLALARRCLEVLALPQHGPI--------RVLEPTCGRGAFLRAAQER---- 50 Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290 P + +G ++ + V + NI + L+ + Sbjct: 51 ------NPTSIRYGIDINADYVQVAR----------NYGTVAHANIFTRN-LADISWPDP 93 Query: 291 RFH-YCLSNPPF 301 + + NPP+ Sbjct: 94 TAPLFVIGNPPW 105 >gi|222528051|ref|YP_002567767.1| hypothetical protein pRS5_p4 [Pediococcus pentosaceus] gi|222446103|emb|CAQ57692.1| hypothetical protein [Pediococcus pentosaceus] Length = 1417 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 84/299 (28%), Gaps = 45/299 (15%) Query: 48 LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107 + + ++E Y + ++ + T +++ + + F Sbjct: 805 FKNKKQQIQENYKKELAQKVANQTKQLANQTT--ETLLKKAEEKKKNTVEDDIRARLRGF 862 Query: 108 SDNAKAIF--------EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159 + + E +F I + F + + + + Sbjct: 863 ARTIPSFLMAYGAPTTELANFDQNIKDDVFKEVTGITLAQFRSLRDTYHFFDETIFNESV 922 Query: 160 EHLIRRFGSEVSEGAE----------------DFMTPRDVVHLATALLLDPDDALFKESP 203 + +R+ + TP+ VV L L + + +FK+ Sbjct: 923 QEFLRKKSQLANYFDGSQNEDIFDYIPAQKTNQIFTPKRVVKLMLDTLEEEEPNIFKD-- 980 Query: 204 GMIRTLYDPTCGTGGFLTD--------AMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 RT D +G +LT+ + + + K +G + + Sbjct: 981 -KNRTFADLYVKSGLYLTEIIKRLYIGLEDQIPESNERLKHILEKQIYGFAPSEIIYNIA 1039 Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDA 311 + S S +++Q + + +F + NPP+ + +KD Sbjct: 1040 K-----NFIFSPFSNLDSSHLKQLDMIPYAKGEKRLNVKFDVVVGNPPYQRNDKKDGKG 1093 >gi|116747858|ref|YP_844545.1| hypothetical protein Sfum_0410 [Syntrophobacter fumaroxidans MPOB] gi|116696922|gb|ABK16110.1| hypothetical protein Sfum_0410 [Syntrophobacter fumaroxidans MPOB] Length = 1147 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 34/173 (19%) Query: 43 RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102 + LEP + + L S+ D F N + N+ Sbjct: 288 FFDDILEP----LFYEALRNDRSHDDDYYSRFNCKIPFLNGGLFDPID-DYDWVHTNINL 342 Query: 103 YIASFS-----------DNAKAIFEDFDFS-STIARLEKA-----GLLYKICKNFSGIEL 145 + FS D IF+ ++F+ LEK LL K + F+ I Sbjct: 343 PDSLFSNQNRTAEGDIGDGILDIFDRYNFTVKEDEPLEKEVAIDPELLGKAYEKFNAI-- 400 Query: 146 HPDTVPDRVMSNIYEHLIRRFGS----EVSEGAEDFMTPRDVVHLATALLLDP 194 PD + Y+ ++R + ++ + TPR++VH L Sbjct: 401 RPDNFEE------YKQVLRSGKKGDENKFNKQFGVYYTPREIVHYMCRQSLIN 447 >gi|313773438|gb|EFS39404.1| conserved domain protein [Propionibacterium acnes HL074PA1] gi|313831232|gb|EFS68946.1| conserved domain protein [Propionibacterium acnes HL007PA1] gi|313834254|gb|EFS71968.1| conserved domain protein [Propionibacterium acnes HL056PA1] gi|314974108|gb|EFT18204.1| conserved domain protein [Propionibacterium acnes HL053PA1] gi|314976602|gb|EFT20697.1| conserved domain protein [Propionibacterium acnes HL045PA1] gi|314984265|gb|EFT28357.1| conserved domain protein [Propionibacterium acnes HL005PA1] gi|315095452|gb|EFT67428.1| conserved domain protein [Propionibacterium acnes HL038PA1] gi|327328490|gb|EGE70252.1| type II restriction enzyme, methylase subunit [Propionibacterium acnes HL096PA2] gi|327444277|gb|EGE90931.1| conserved domain protein [Propionibacterium acnes HL043PA2] gi|327444843|gb|EGE91497.1| conserved domain protein [Propionibacterium acnes HL043PA1] gi|328759925|gb|EGF73509.1| type II restriction enzyme, methylase subunit [Propionibacterium acnes HL099PA1] Length = 853 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTTEEILHLSVCEPALGSGAF 567 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723 >gi|188527264|ref|YP_001909951.1| type II adenine specific methyltransferase [Helicobacter pylori Shi470] gi|188143504|gb|ACD47921.1| type II adenine specific methyltransferase [Helicobacter pylori Shi470] Length = 816 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 28/165 (16%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311 D NI Q T +F +NPP+GKK+ +++ Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKE 222 >gi|319902462|ref|YP_004162190.1| hypothetical protein Bache_2651 [Bacteroides helcogenes P 36-108] gi|319417493|gb|ADV44604.1| protein of unknown function DUF450 [Bacteroides helcogenes P 36-108] Length = 1000 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 72/258 (27%), Gaps = 74/258 (28%) Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAMNH 226 SE + TP +V + P + ++ + DP CG+G FL +H Sbjct: 342 SEFRKSNGAVTTPEHIVQNTIDCTIAPQYLQSLTNEQILDLKILDPACGSGVFLVSIYDH 401 Query: 227 VADCGSH---------------------------HKIPPILVPHGQELEPETHAVCVAGM 259 ++ K+ HG ++ E V + Sbjct: 402 LSTQIERNIEGKQDSLPDQYLYEKVGKKCLNLRGRKLIVNQCLHGVDINQECVEVAKLSL 461 Query: 260 LIRRLESDPRRDLSK--------------NIQQGSTLSK--------------------- 284 ++ ++ D + NI+ G++L + Sbjct: 462 SLKIIDGYEPSDFNNAGLYGSQILHGVGVNIKCGNSLVEPDIMERVSSITENLEELAATN 521 Query: 285 ---------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 D+F F + + NPP+ K+ + R+G D + Sbjct: 522 IFDYRTAFSDVFDSGGFDFVIGNPPYV--EVKNYNVALPCMSVYIKQRYGSSRNGKIDLA 579 Query: 336 MLFLMHLANKLELPPNGG 353 + F+ L + G Sbjct: 580 IPFIERGIELLNEYGSLG 597 >gi|227500974|ref|ZP_03931023.1| methylase [Anaerococcus tetradius ATCC 35098] gi|227216896|gb|EEI82291.1| methylase [Anaerococcus tetradius ATCC 35098] Length = 934 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 65/263 (24%), Gaps = 68/263 (25%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 +F D D I RL + I N + + + + +++E + E Sbjct: 271 GLFSDMDIE--IPRLNPN--IVDIILNRASLGFDWSEISPTIFGSVFESTL---NPETRR 323 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFK-------------------ESPGMIRTLYDPT 213 T +H L D + DP Sbjct: 324 TGGMHYTSIKNIHKLIDPLFLDDLKEEFEEIKEIAQVKQKKQRLEELHNKIANLKFLDPA 383 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------------------VPHGQEL 247 G+G FLT+ + + I +G E+ Sbjct: 384 AGSGNFLTEIYISLRKLENKIIEEKIRKKDVISISFIDESSEELENPIRVNLGQFYGIEI 443 Query: 248 EPETHAVCVAGM-------------LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKR 291 V + +I + NI + + L DL + Sbjct: 444 NDFAVTVARTALWISEDQMMKETMNIIHQKMDILPLKSYANIVEANALTMDWNDLVKAEE 503 Query: 292 FHYCLSNPPFGKKWEKDKDAVEK 314 Y + NPPF DK+ + Sbjct: 504 LDYIMGNPPFVGARLMDKEQRKD 526 >gi|289663951|ref|ZP_06485532.1| hypothetical protein XcampvN_12985 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 354 Score = 39.6 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 34/159 (21%) Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 ++DP CG G L A + HG E++P + + Sbjct: 51 QPGEQVFDPFCGFGSTLLAAALEARN------------AHGMEIDPARAQLARTRLQRHA 98 Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 +E+ N CL+N P+ + + + + +G+ G Sbjct: 99 VEAPVLISTLVN----------KTPAAPIDLCLTNVPYFGCHWQGEALPGQLYASGDYGS 148 Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGR-AAIVLS 361 + G + + + L GG A+V + Sbjct: 149 YLTG-----------MRAVFHALRKQLRPGGMGVAMVQN 176 >gi|281420196|ref|ZP_06251195.1| hypothetical protein PREVCOP_04065 [Prevotella copri DSM 18205] gi|281405691|gb|EFB36371.1| hypothetical protein PREVCOP_04065 [Prevotella copri DSM 18205] Length = 1066 Score = 39.6 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 47/345 (13%), Positives = 89/345 (25%), Gaps = 74/345 (21%) Query: 78 YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKI 136 F+N+ + L ++ + + +D + F + R+ Sbjct: 266 QVFWNSPSFKTQALR----LQPFKTLVNALADELNSPFSKIGIWYDNTRRM--------- 312 Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL--LDP 194 S I L + +YE + + + + TP + A + + P Sbjct: 313 ---LSCIRLSEHQITTPNFHELYESFLAAYDGKTRNDFGAWYTPMPLAEYAAKFVDAILP 369 Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 + + DP CGTG + + + G E+ P +A+ Sbjct: 370 SVLPGENVRDKAIKVVDPCCGTGT-------FIEAVLNKMPLLEGSKIIGFEILPVPYAL 422 Query: 255 C--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH------------------- 293 ML D + + +TLS F Sbjct: 423 ANYRISML------DVTDNTDIVVVLTNTLSDSTFKQTHIEGRASDVVSTFFLNEQRKAK 476 Query: 294 --------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSML-----FL 339 + NPP + + K R + + + FL Sbjct: 477 KLSEPPLTIIIGNPPCS-DSVDINNEGKIIAKLMNDFRPKVRKGRSNKQKQLANEMTKFL 535 Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 K E A+VL R++L+E+ Sbjct: 536 RWCLFKAEKSRP--SIFALVLP----STFAQNESFVNARKYLVEH 574 >gi|288927824|ref|ZP_06421671.1| helicase [Prevotella sp. oral taxon 317 str. F0108] gi|288330658|gb|EFC69242.1| helicase [Prevotella sp. oral taxon 317 str. F0108] Length = 1102 Score = 39.6 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 50/236 (21%) Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244 ++ + +R DP+ G G F ++ + +I L P+G Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKQAGMVDAMEKDLLTARITQALHPYG 170 Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 ++ + +R+ + +L ++ SN PFG Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205 Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 D+ + E+ + F+ K GG + S Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLTFITSQGV 253 Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417 L + + IRR+L++N + + + LP+ +F T++ + L +L + +E Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305 >gi|294776307|ref|ZP_06741790.1| N-6 DNA Methylase [Bacteroides vulgatus PC510] gi|294449847|gb|EFG18364.1| N-6 DNA Methylase [Bacteroides vulgatus PC510] Length = 1907 Score = 39.6 bits (91), Expect = 2.1, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 79/264 (29%), Gaps = 53/264 (20%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ + + +P+ G G F+ Sbjct: 104 AFYTPPEITDAIA--------DVLHGRGIRPDRVLEPSAGVGAFV--------------- 140 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G + + + A ++ R+ D +Q + K FTG F Sbjct: 141 ----DAVLGYKPDADIMAFEK-DLMTGRILKHLHPDQKVRVQGFEKIEKP-FTGY-FDLV 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 +SN PFG D + E I + FL K GG Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSHDPARRSAAKTIHN--YFFL-----KSLDTVREGGI 241 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412 A + S L + IR +++ + + LP +LF T + + L IL Sbjct: 242 VAFITSQGVL----DAPSNAPIREYMMRHANPVGVARLPNNLFTDNAGTEVGSDLIILQK 297 Query: 413 RKTEERRGKVQLINATDLWTSIRN 436 ++R L + +++ Sbjct: 298 NSGKKRE----LYDYEEMFIQTGK 317 >gi|257438349|ref|ZP_05614104.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165] gi|257199180|gb|EEU97464.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165] Length = 2422 Score = 39.6 bits (91), Expect = 2.1, Method: Composition-based stats. Identities = 62/401 (15%), Positives = 113/401 (28%), Gaps = 80/401 (19%) Query: 49 EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIA 105 EPT +K N + ++F A SE G+ + ++ + Sbjct: 756 EPTPDEELDKLPISVEVNGEWQTFPDAAAADEALNSEPMPEAAGNFHITDDDLGVGGPKQ 815 Query: 106 SFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-HL 162 ++ N +AI F E+ +L + + + + L Sbjct: 816 KYARNIEAIRTLFRLEQEHRGATAEEQQVLSQYVGWGGLADAFDPDKDNWAKEYMELKGL 875 Query: 163 IRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 + + + S T V+ ++ + +P+ G G F Sbjct: 876 LSEDEYAAARSSTLNAHYTSPVVIRSIY--------DAVEKMGFQSGNILEPSMGVGNFF 927 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKN 275 +AD +G EL+ T + A + + E+ RRD Sbjct: 928 GMLPTSMAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF--- 974 Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335 + + N PFG+ DK +K G S + Sbjct: 975 ----------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHN 1003 Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 F + GG A V S +S R+ + E + + LP Sbjct: 1004 YFFAKAI-----DQVRPGGVVAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPN 1053 Query: 396 DLF---FRTNIATYLWILSNRKTEER--RGKVQLINATDLW 431 + F T + + + L R VQL + + Sbjct: 1054 NAFKANAGTEVVSDIIFLQKRDRPADIEPTWVQLGQTENGF 1094 >gi|190149639|ref|YP_001968164.1| Modification methylase AccI [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|190151094|ref|YP_001969619.1| Modification methylase AccI [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914770|gb|ACE61022.1| Modification methylase AccI [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189916225|gb|ACE62477.1| Modification methylase AccI [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 441 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 25/171 (14%) Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFT--GKRFHYCLSNPPFGKKWEKDKDAVE 313 M + E D I++ TL D F G + + NPP+G + +K + Sbjct: 1 MSVINNELDLYDTSELWIKETDTLIDNEIDYFAKTGGYYDKVIGNPPYGAWQDHEKRSTL 60 Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373 K+ G + LFL+ + L+ G + ++ + +F Sbjct: 61 KKKYLGHYVKETYT---------LFLLRCLSVLKPK----GLLSFIIPDTFMFLNM---- 103 Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQ 423 S +R+ LL N I+ ++ P+ F N + L I++ K +G Q Sbjct: 104 HSNLRKTLLTNAKIKEVLIFPSKFFPGVNFGYSNLSIITLEKC--CKGDYQ 152 >gi|160914103|ref|ZP_02076325.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991] gi|158433914|gb|EDP12203.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991] Length = 2685 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 61/256 (23%), Gaps = 60/256 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + S T V+ + + +P+ G G F Sbjct: 1093 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------SRMGFETGNILEPSMGVGNFFGML 1144 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+P + + + +I G Sbjct: 1145 PEEMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1180 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG+ DK + Sbjct: 1181 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFNIHNY--------------------FF 1220 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402 K GG A V + +S +RR+L + + + LP D F Sbjct: 1221 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1275 Query: 403 IATY--LWILSNRKTE 416 + L R Sbjct: 1276 AEVVSDIIFLQKRDRP 1291 >gi|327457837|gb|EGF04492.1| hypothetical protein HMPREF9586_00414 [Propionibacterium acnes HL083PA2] Length = 1142 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324 >gi|315100389|gb|EFT72365.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1] Length = 1142 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324 >gi|315081168|gb|EFT53144.1| conserved domain protein [Propionibacterium acnes HL078PA1] Length = 1541 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723 >gi|315079603|gb|EFT51596.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2] Length = 1542 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723 >gi|314968417|gb|EFT12515.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1] Length = 1541 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723 >gi|314957551|gb|EFT01654.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1] Length = 1142 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324 >gi|313801281|gb|EFS42532.1| conserved domain protein [Propionibacterium acnes HL110PA2] gi|313829490|gb|EFS67204.1| conserved domain protein [Propionibacterium acnes HL063PA2] gi|313839996|gb|EFS77710.1| conserved domain protein [Propionibacterium acnes HL086PA1] gi|314963755|gb|EFT07855.1| conserved domain protein [Propionibacterium acnes HL082PA1] gi|315109106|gb|EFT81082.1| conserved domain protein [Propionibacterium acnes HL030PA2] Length = 1541 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723 >gi|313763500|gb|EFS34864.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1] gi|313816682|gb|EFS54396.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1] gi|314914798|gb|EFS78629.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4] gi|314919385|gb|EFS83216.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1] gi|314920707|gb|EFS84538.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3] gi|314954458|gb|EFS98864.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] gi|315099128|gb|EFT71104.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2] gi|327454879|gb|EGF01534.1| hypothetical protein HMPREF9581_01066 [Propionibacterium acnes HL087PA3] gi|328755289|gb|EGF68905.1| hypothetical protein HMPREF9579_01317 [Propionibacterium acnes HL087PA1] gi|328758230|gb|EGF71846.1| hypothetical protein HMPREF9588_00869 [Propionibacterium acnes HL025PA2] Length = 1142 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324 >gi|295131129|ref|YP_003581792.1| hypothetical protein HMPREF0675_4648 [Propionibacterium acnes SK137] gi|291375686|gb|ADD99540.1| conserved hypothetical protein [Propionibacterium acnes SK137] Length = 853 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723 >gi|289426361|ref|ZP_06428104.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289153089|gb|EFD01807.1| conserved hypothetical protein [Propionibacterium acnes SK187] Length = 957 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219 + R + + + TP + L+ D + ++ +P G+G F Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567 Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + + +L+ + + + ++ + Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625 Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330 I TL D L P FG + + H ++ + P Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676 Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377 + L LA +L+ G L + + A S E++ Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723 >gi|210622662|ref|ZP_03293302.1| hypothetical protein CLOHIR_01250 [Clostridium hiranonis DSM 13275] gi|210154100|gb|EEA85106.1| hypothetical protein CLOHIR_01250 [Clostridium hiranonis DSM 13275] Length = 386 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 36/148 (24%) Query: 204 GMIRTLYDPTCGTGGFLTDAM------------NHV----------------ADCGSHHK 235 RTL DP CG+G L +A + + Sbjct: 191 RPGRTLVDPMCGSGTILIEAAMMGLNMAPGLNREFISEKWRTIDKKIWWDTRREAFDQMN 250 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 +G +++PE+ + I + + I + + + + + + Sbjct: 251 EDLDFKIYGYDIDPESIEIAKENAEIAGV--------ADYIDFAVADATEFKSDEEYGFI 302 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGR 323 ++NPP+G++ E ++ + G R Sbjct: 303 VTNPPYGERLESEESVKLLYKELGYAFR 330 >gi|108562880|ref|YP_627196.1| type II adenine specific methyltransferase [Helicobacter pylori HPAG1] gi|107836653|gb|ABF84522.1| type II adenine specific methyltransferase [Helicobacter pylori HPAG1] Length = 545 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + + TP +V P D ++ Sbjct: 86 ENSSDLEKLGSHYE---KELSNTTRNLEGIYYTPNRIVE---QRFTLPKDFDASQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q LS +F +NPP+GKK+ +D+ + K Sbjct: 181 RYHLDC-PNIAQKDFLSLKHTP--QFDCIFTNPPWGKKYNQDQK---ENFKQQFN----- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|119714054|ref|YP_919196.1| helicase domain-containing protein [Nocardioides sp. JS614] gi|119525963|gb|ABL79333.1| helicase domain protein [Nocardioides sp. JS614] Length = 1925 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 65/245 (26%), Gaps = 58/245 (23%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 T +V + L + +P CG+G F+ A +HV D Sbjct: 267 TTLSAHYTDAALVKAVWSALGTAGFDQ-----SAGGRVLEPGCGSGTFIGFAPDHVRD-- 319 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 G EL+P T V + +I+ G + ++ + Sbjct: 320 ----------VVGVELDPTTARVA------------SLLYPAADIR-GESFAETRLPEGK 356 Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351 + N PF D R G L + K Sbjct: 357 RDLVIGNVPFADVVPHDST----------YNRLGLSLHN----------YFIYKSLHLVR 396 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408 GG A++ S + R + + + LP T++ T L Sbjct: 397 PGGVVAVLTSRWTMDAANPA-----AREAFADMADLVTALRLPNQTHHQAAGTDVITDLL 451 Query: 409 ILSNR 413 + R Sbjct: 452 VFRRR 456 >gi|159029024|emb|CAO90010.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 920 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 48/212 (22%), Gaps = 50/212 (23%) Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDP 212 + T + L D E R DP Sbjct: 298 MNPKERRNLGAHYTSEKNIQKVIKPLFLDDLNREFEKIKGNRNKLLEFQKKIANLYFLDP 357 Query: 213 TCGTGGFLTDAMNHVADCG--------------------SHHKIPPILVPHGQELEPETH 252 CG G FL + D S + G E + Sbjct: 358 ACGCGNFLIITYRELRDLEILVLQELDKLDKTGQLVTDISTIIQVDVNQFAGIEYDEFAV 417 Query: 253 AVCVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT---GKRFHYCL 296 V M + + + + S I G+ L D ++ ++ L Sbjct: 418 RVAEVAMWLIDHQMNIKVSNTFGQYFVRLPLKKSAKIVHGNALRIDWEELISKEKLNFIL 477 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 NPPF + + G G G+ Sbjct: 478 GNPPFVGAMIMNDEQRNDMA-YVFDGEKGIGV 508 >gi|167628052|ref|YP_001678552.1| hypothetical protein Fphi_1824 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598053|gb|ABZ88051.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 892 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 34/154 (22%) Query: 208 TLYDPTCGTGGFLTDAMNHVADC---------------GSHHKIPPILVPHGQELEPETH 252 ++DP CG+G FL A + + + +G E++ H Sbjct: 342 KVFDPACGSGNFLIIAYKKLRELEIAILQRIDALSSQQNMDFSQIRLDNFYGIEIDDFAH 401 Query: 253 AVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDL-----FTGKRFHY 294 V + M + + + + + NI G+ D Y Sbjct: 402 EVAILSMWLVEHQMNLKFYEAFGRTSPTLPLKAGGNIVAGNATRLDWEKVCPKNNGDEIY 461 Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 L NPPF K ++ ++ + E K+ G GL Sbjct: 462 LLGNPPFYGK-KEQSNSQKIEIKSLFNNISGYGL 494 >gi|330838576|ref|YP_004413156.1| N-6 DNA methylase [Selenomonas sputigena ATCC 35185] gi|329746340|gb|AEB99696.1| N-6 DNA methylase [Selenomonas sputigena ATCC 35185] Length = 1191 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 27/201 (13%) Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 +L R + R + IQQ S +++ ++NPP+ E K Sbjct: 463 NLLFRAWIDEVERRILPLIQQAKVFS------QKYDVIVTNPPYLGSTRFSFKLNEYVKK 516 Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377 SD SM+ L L+ G A V ++S + + S ++ Sbjct: 517 YFPNE--------KSDLSMVMLKK---SLQETAKTNGYVAFVTTASWM----SLSSFEKL 561 Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYL--WILSNRKTEERRGKVQLIN--ATDLWTS 433 R ++ ++ I+ +V T+LF + W++ K R V+L++ + Sbjct: 562 RSYMYKDCAIDTLVDCGTELFEGKVGHNSIVSWVVRKTKFNYRMTAVRLVDYCYSRRDEK 621 Query: 434 IRNEGKKRRII--NDDQRRQI 452 K+ + +I Sbjct: 622 EVEFFNKKNYFVATQENFSKI 642 >gi|121593951|ref|YP_985847.1| helicase domain-containing protein [Acidovorax sp. JS42] gi|120606031|gb|ABM41771.1| helicase domain protein [Acidovorax sp. JS42] Length = 1642 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 65/256 (25%), Gaps = 55/256 (21%) Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + S + T V+ + + + +P G G FL Sbjct: 134 DYASARASVNNSHYTEVHVIEAMWQAV--------ERFGFTGGRVLEPAAGVGHFLGAMP 185 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 +A+ E++ + + A + K Sbjct: 186 RTLAE---------RSAVTAIEIDQISGRLLQALYAPHGADVRIAP-----------FEK 225 Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344 F + N PFG + + + RF +I + Sbjct: 226 VALPENWFDLVIGNVPFG-------NYPVADASHKPYARF-----RIHNY------FFGR 267 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---T 401 L+L GG I + + A G + LL + LP F T Sbjct: 268 ALDLVRPGGLVCFITSTGTMEARDDAVRGHVSSQAELL------GAIRLPKGAFAGIAST 321 Query: 402 NIATYLWILSNRKTEE 417 + T + L R + E Sbjct: 322 EVQTDILFLRKRHSGE 337 >gi|332075661|gb|EGI86129.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17545] Length = 2097 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 75/257 (29%), Gaps = 59/257 (22%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ D + + +P+ G G F+ + + + Sbjct: 1176 FYTPKTVI--------DGIYKTLSDMGFKQGNILEPSMGIGNFIGNIPDKM--------- 1218 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G EL+ + + + I+ L + F+ F + Sbjct: 1219 -NKSKFYGIELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDAVI 1264 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D++ + + K GG Sbjct: 1265 GNIPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1304 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +RR+L + LP D F T + + + L R Sbjct: 1305 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1359 Query: 414 KTEERRGKVQLINATDL 430 + R + + A D Sbjct: 1360 DSIRERDEDWIHLAEDE 1376 >gi|330807435|ref|YP_004351897.1| hypothetical protein PSEBR_a735 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375543|gb|AEA66893.1| Hypothetical protein PSEBR_a735 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1268 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 68/240 (28%), Gaps = 60/240 (25%) Query: 38 FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97 FT+L RL L A G + + GY Y S + Sbjct: 94 FTVLNRLAALL---------MMEARGQLIESVSKGYQSRGYQLY-------SKIAGNALG 137 Query: 98 NNLESY----IASFSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPD 152 ++Y + F + + + FD + L + L + + E+ P D Sbjct: 138 ETGQAYQVYLFSVFDELTQELPALFDRYAANGLLFPRETALRAVLGELNHFEIEPLWAED 197 Query: 153 RVMSNIYEHLIRRFGSEVSEGAED-------------FMTPRDVVHLATA---------- 189 + IY++ + + A F TPR VV Sbjct: 198 ETIGWIYQYFNSKEERKAMRDASQAPRNSRELAVRNQFFTPRYVVEFLVDNTLGRLWFNA 257 Query: 190 -------------LLLDPDD---ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 LL+ PD+ A K L DP CG+ F A + + Sbjct: 258 TGGQTELRDRCQYLLVKPDEQPQASSKVRDPRTLKLLDPACGSMHFGLYAFDLFLEIYRE 317 >gi|237751702|ref|ZP_04582182.1| type IIS restriction-modification protein [Helicobacter bilis ATCC 43879] gi|229373068|gb|EEO23459.1| type IIS restriction-modification protein [Helicobacter bilis ATCC 43879] Length = 1196 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 55/194 (28%), Gaps = 15/194 (7%) Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE----LHPDTVPDRVMSNIYEHL 162 F+ K I + + +L A +L + + +G + P + + E + Sbjct: 312 FTTTPKDIIDHIKTNH--DKLINAAVLGLVFEKLNGYKEGSFYTPSFITSYMCKESLEKV 369 Query: 163 -IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I +F + + + + L D + + DP G+G FL Sbjct: 370 VIEKFNE---RKSWECDSLESLAQKLDKLTDSKDGYKEANAIFDSIKVCDPAVGSGHFLV 426 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 +N + + KI + + + +R + S N T Sbjct: 427 SMLNAMIELKFRLKILCEIHIDDNGERDYKR---LKDIRLRLENDEILIQDSNNTLH--T 481 Query: 282 LSKDLFTGKRFHYC 295 H Sbjct: 482 YQTPAHENLESHII 495 >gi|68063827|ref|XP_673909.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|68072333|ref|XP_678080.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56492100|emb|CAI02471.1| conserved hypothetical protein [Plasmodium berghei] gi|56498430|emb|CAH98049.1| conserved hypothetical protein [Plasmodium berghei] Length = 272 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 29/125 (23%), Gaps = 8/125 (6%) Query: 36 LPFTLLRRLECALEPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGS 93 L L+++ +S EK + E+ + YN S L + Sbjct: 108 LVLVFLKKISDTYLEDQSKWMEKMKSSQEEQGKALEEAMYEYEKNILYNHSIKEQQLLQN 167 Query: 94 TNTRNNLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLL---YKICKNFSGIELHP 147 + I + + + + F K L + + Sbjct: 168 NKKLDEWNECIENAYEVQQEVLRQFEAKKIEKANQVANKNNELLIAQNYIEKIKEAATNK 227 Query: 148 DTVPD 152 Sbjct: 228 KQDSS 232 >gi|213966008|ref|ZP_03394198.1| hypothetical protein CORAM0001_1922 [Corynebacterium amycolatum SK46] gi|213951422|gb|EEB62814.1| hypothetical protein CORAM0001_1922 [Corynebacterium amycolatum SK46] Length = 1520 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 50/148 (33%), Gaps = 26/148 (17%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTG 217 + R S E + F +P + ++ A + + ++ +P G+G Sbjct: 505 DFVFRQSSRDRERSASFYSPPVITEFVVGQAIEELKAAHRIDTADDILTLSICEPAMGSG 564 Query: 218 GFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVC 255 F +A+N +A+ + K + +G +L + Sbjct: 565 AFAVEAVNQLAELYLNKKQEELGQKIEPERLTEELQKVKASIALHQVYGVDLNKTAVELA 624 Query: 256 VAGMLIRRLESDPRR-DLSKNIQQGSTL 282 + + + ++ + +++ G++L Sbjct: 625 EISLWLDTMSAELKAPWFGLHLRHGNSL 652 >gi|167754264|ref|ZP_02426391.1| hypothetical protein ALIPUT_02557 [Alistipes putredinis DSM 17216] gi|167658889|gb|EDS03019.1| hypothetical protein ALIPUT_02557 [Alistipes putredinis DSM 17216] Length = 273 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 26/139 (18%) Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 +++ L + F TP + L + + + ++ K I ++ DP Sbjct: 92 DAFGDLFMAL---TSQSGQQQKGQFFTPAHITDLMSKITMGKQESDAK-----ILSVCDP 143 Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272 T G+G L A P +++ +CV LI + Sbjct: 144 TAGSGRTLLAAKA----------DRPQSYLVAWDIDYTCCLMCVCNFLINGCVGE----- 188 Query: 273 SKNIQQGSTLSKDLFTGKR 291 + +L D F G Sbjct: 189 ---VVCIDSLRMDNFRGAW 204 >gi|157953202|ref|YP_001498093.1| hypothetical protein AR158_C011L [Paramecium bursaria Chlorella virus AR158] gi|156067850|gb|ABU43557.1| hypothetical protein AR158_C011L [Paramecium bursaria Chlorella virus AR158] Length = 373 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 59/259 (22%) Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 ++ +E + + E F TP+ V + +P + +P+ Sbjct: 10 QITKDFEKTLDK---EKKSKQGIFFTPKSVREKLFGYVDEPK------------NILEPS 54 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273 CGTG ++D + P G EL+ + + VC + Sbjct: 55 CGTGEIISDC----------IERFPSANITGVELDKDIYDVCK----------RSYTREN 94 Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 NI L + G +F + + NPPF + + K+ GR Sbjct: 95 VNIINDDFL---AWKGGKFDFIVGNPPFVVRPKGHKND-----DRIVRGR---------- 136 Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393 S L++ L + G A ++ IR+ ++ D++ + L Sbjct: 137 -SNLYVEFLFKCITEHLKEDGILAFIIP----STIGNSKFYEPIRKLIITLDILSFEI-L 190 Query: 394 PTDLFFRTNIATYLWILSN 412 F TN ++ N Sbjct: 191 DKHEFCDTNTRLCSIVIKN 209 >gi|229817502|ref|ZP_04447784.1| hypothetical protein BIFANG_02765 [Bifidobacterium angulatum DSM 20098] gi|229785291|gb|EEP21405.1| hypothetical protein BIFANG_02765 [Bifidobacterium angulatum DSM 20098] Length = 627 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 15/130 (11%) Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------ILVPHGQ 245 ++ + T+ DP CG+G LT A + + + P +G Sbjct: 300 GNEDILAIRTPEDLTVCDPACGSGHMLTYAFDLLYEIYEEEGYAPSDIPSLILKHNLYGM 359 Query: 246 ELEPETHAVCVAGMLIRRLESD---PRRDLSKNIQQG--STLSKD--LFTGKRFHYCLSN 298 E++ ++ + ++ ++ + NIQ+ T +D + L + Sbjct: 360 EIDERAASLAAFALTMKARSRSRRFFKKQVEPNIQRIAPITFKEDDVAELNDLYQVNLDS 419 Query: 299 PPFGKKWEKD 308 + + D Sbjct: 420 MVWNTYAKAD 429 >gi|296126775|ref|YP_003634027.1| DNA methyltransferase [Brachyspira murdochii DSM 12563] gi|296018591|gb|ADG71828.1| DNA methyltransferase [Brachyspira murdochii DSM 12563] Length = 909 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 73/275 (26%), Gaps = 61/275 (22%) Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFK------ 200 + + ++++ + + E + T ++++ +AL LD F+ Sbjct: 284 SNISPAIFGSLFQCVADK---EKRRSFGEHYTSEKNIMKTISALFLDELREEFEKVKTNK 340 Query: 201 ------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------------- 237 DP CG G FL A + + Sbjct: 341 NKLKEFHQKISKLKFLDPACGCGNFLIIAYREIRELEIDILTELYKEDLKDGVLSIDISN 400 Query: 238 ----PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-------------IQQGS 280 + +G E+ + + + + + + I+ + Sbjct: 401 LSLIDVDNFYGIEINEFPAKIAEVALWLMDHLMNLKLSIKFGRAFERIPLKKSAVIKNEN 460 Query: 281 TLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 L D K Y L NPPF +E K G G + Sbjct: 461 ALIIDWKNIIDVKELSYILGNPPF-VGARMKSKEQSEEMKKVFNNMKGYG-------DLD 512 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372 ++ K G A +S++ + G S Sbjct: 513 YVSAWYKKSAELIKGTKIKAAFVSTNSITQGTQVS 547 >gi|254372239|ref|ZP_04987730.1| predicted protein [Francisella tularensis subsp. novicida GA99-3549] gi|151569968|gb|EDN35622.1| predicted protein [Francisella novicida GA99-3549] Length = 1112 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 72/244 (29%), Gaps = 68/244 (27%) Query: 103 YIAS--FSDNAKAI--------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDT 149 Y+ F+ + + I ED F + + L+ L+ NF+ IE P+ Sbjct: 301 YLNGGLFTKDERDIELEKNKIRIEDGLFEDLLRKEDNLQGKKGLFSSY-NFTIIEDSPED 359 Query: 150 ----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----------------- 188 + ++ ++E L+ E + F TPR++VH Sbjct: 360 VDIAIDPEMLGKVFEDLL-----EDRKEKGAFYTPREIVHYMCQQSLINYLKGKFVSEED 414 Query: 189 -----ALLLDPDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGSHH 234 L+L + + DP G+G F ++ + Sbjct: 415 EQDIKDLVLYKKTDNNTLVNKRAKEVKQALHEIKVLDPAIGSGAFPMGMLHEIVSALHSI 474 Query: 235 KIPPI----------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGS 280 +G ++E + + + + + N I G+ Sbjct: 475 DKSTNIAELKKQVIQNSIYGVDIEESAVEIAKLRFWLSIVVDSDKPEPLPNLFYKIMVGN 534 Query: 281 TLSK 284 +L + Sbjct: 535 SLLE 538 >gi|298528753|ref|ZP_07016157.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512405|gb|EFI36307.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] Length = 1628 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 56/201 (27%), Gaps = 28/201 (13%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I R + + + TP + L K + T+ +P G+ FL Sbjct: 562 FIYRMSGRDRQQSASYYTPESLTQCLVKYSLQELLQGKKADDILELTICEPAMGSAAFLN 621 Query: 222 DAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVCVAGM 259 +A+N +A K G +L P + + Sbjct: 622 EAVNQLAQAYLDRKQNELDTRLSVEELAREKQKVKTYLADNNVFGVDLNPVAVELAEVSL 681 Query: 260 LIRRLESDPRRDLSKN-IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315 + + + N + G++L +D+F + P ++ Sbjct: 682 WLNTIYAGGYVPWFGNQLVCGNSLVGARRDVFQPNLLRKKSKSDPLWLDSVPERIQPGAR 741 Query: 316 HKNGELGRFGPGLPKISDGSM 336 G + + LP + + Sbjct: 742 RPRGTV--YHFLLPDKNMAAY 760 >gi|332974669|gb|EGK11586.1| type II restriction modification enzyme methyltransferase [Kingella kingae ATCC 23330] Length = 311 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 13/97 (13%) Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197 F I+ + +M +Y + ++ + +TP V + +L Sbjct: 212 NIFKSIDGFGGHID--IMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQMLNI---- 264 Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 + D G+ GFL AM + + Sbjct: 265 ------KANNKVMDLATGSAGFLISAMELMIQDAENQ 295 >gi|311741945|ref|ZP_07715755.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311314438|gb|EFQ84345.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length = 547 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 37/214 (17%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F TP + + G + +P+CG FL +++ + G Sbjct: 15 KARGAFFTPPAIADFVVEWAVR----------GAGERVLEPSCGEAAFLERSVHRLRSLG 64 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291 + G ++ + +I +G + Sbjct: 65 AE-----SPTVSGVDIHAASVREAA--------RIVTESGGKPDILEGDFFTVP--PEPI 109 Query: 292 FHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350 + + NPPF + + + + E G GL F +H A L++ Sbjct: 110 YDAVVGNPPFIRYHDFSGEARLRSRQAALEAGVSISGLASSWAA---FTVHAALFLKV-- 164 Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 GGR +V+ + L A +RR+LL++ Sbjct: 165 --GGRMGLVVPAELLSVNYAAH----VRRFLLQS 192 >gi|224282962|ref|ZP_03646284.1| hypothetical protein BbifN4_03955 [Bifidobacterium bifidum NCIMB 41171] gi|313140120|ref|ZP_07802313.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132630|gb|EFR50247.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 1195 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------ILVPHGQ 245 ++ + T+ DP CG+G LT A + + + P +G Sbjct: 300 ENEDILNIQTPEELTVCDPACGSGHMLTYAFDLLYEIYEEEGYAPSDIPGLILKHNLYGM 359 Query: 246 ELEPETHAVCVAGMLIR 262 E++ ++ + ++ Sbjct: 360 EIDERAASLAAFALTMK 376 >gi|40643170|emb|CAE14722.1| unnamed protein product [Leptospira phage LE1] Length = 927 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 75/300 (25%), Gaps = 71/300 (23%) Query: 68 DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-------DNAKAIFEDFD- 119 D + F+ + L ++ + + + N F Sbjct: 198 DDTGIFNKDDFLFFLKER---TKLDGSDLGLWIAQFFQVLNTPTEQRQANLDEDLAKFPY 254 Query: 120 -----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174 F I + L I V + +++++++ + Sbjct: 255 VNGQLFEEAIPFAQFDQKLRDILIQACEFNWAL--VSPAIFGSLFQYVMSK---VERREL 309 Query: 175 EDFMTP-RDVVHLATALLLDPDDALFKESPGMI--------------RTLYDPTCGTGGF 219 T ++++ L LD FK + DP CG G F Sbjct: 310 GAHYTSEKNILKTIHGLFLDEHLEEFKSLNLKKNIKGLEDLLARIRKIKILDPACGCGNF 369 Query: 220 LTDAMNHVADCGSHHKIPPI-------------------LVPHGQELEPETHAVCVAGML 260 L + + + +G E+E + + Sbjct: 370 LILSYRELRRLEINLLKEIRKLKGLGLELSIQTLDSLDVDHLYGIEIEEFPAQIAKTAIW 429 Query: 261 I--RRLESDPRRD-----------LSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKK 304 I + + ++ + I G+ L +++ Y L NPPF Sbjct: 430 IMDHLMNVEMGKEFGEYYVRLPLKKAPTIVIGNALRLKWEEIIKPDELTYILGNPPFAGS 489 >gi|317180649|dbj|BAJ58435.1| Type II adenine specific methyltransferase [Helicobacter pylori F32] Length = 545 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 37/207 (17%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206 ++ + + YE + + TP +V L P D ++ Sbjct: 86 ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDTSQA---- 135 Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266 DP G+G F+ A+ + +G + + A+ +R++ Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180 Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 D NI Q T +F +NPP+GKK+ +++ + K Sbjct: 181 RYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN----- 229 Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353 L + D + LF + N L+ + G Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255 >gi|326484583|gb|EGE08593.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Trichophyton equinum CBS 127.97] Length = 454 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 87/264 (32%), Gaps = 35/264 (13%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI- 143 + + T ST T I SFS A F I ++ A + + + F+ Sbjct: 100 RFDVDTYASTRTAKERNEIIESFSFLA--------FEGPI-KMVDADEKFCVFEEFAHQL 150 Query: 144 --ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT--PRDVVHLATALLLDPDDALF 199 +P T + V+ IY + R+ +E + R + + + Sbjct: 151 ASSGNPKTHTEPVLKRIY---LGRWVTEGGRTEINTYNLKKRKYISTTSMDAELSLISAN 207 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + YDP GTG FL A + A +T Sbjct: 208 MTHAAPGKLFYDPFVGTGSFLVAAAHFGAVTCGSDIDGRSFRGKEATSHIDT-------- 259 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + S+ ++ + + T + DL + + F + +PP+G + + Sbjct: 260 ---GVISNFKQYGLLS-RFLDTFTSDLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKD 315 Query: 315 EHKNGELGRFGPGLPKISDGSMLF 338 + + GEL F G+P + +F Sbjct: 316 DSRKGELMMFQ-GVPSYKRENYIF 338 >gi|310640654|ref|YP_003945412.1| methyltransferase [Paenibacillus polymyxa SC2] gi|309245604|gb|ADO55171.1| Methyltransferase [Paenibacillus polymyxa SC2] Length = 328 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 25/123 (20%) Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 P V L +D + L DP CG G + +A+ Sbjct: 169 PVLVARALVNLAA--NDQFASKGKSDSLKLLDPCCGMGNVMIEAL------------SMD 214 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 G ++ P + E D + N+ G + + + Sbjct: 215 KNIRGCDINPLAVRGARVNLRHYGYEEDLVKLGDMNMLAG-----------TYDAAILDM 263 Query: 300 PFG 302 P+ Sbjct: 264 PYN 266 >gi|293378951|ref|ZP_06625106.1| conserved hypothetical protein [Enterococcus faecium PC4.1] gi|292642492|gb|EFF60647.1| conserved hypothetical protein [Enterococcus faecium PC4.1] Length = 248 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + + TP+ +V + + + + T +P G G FL + + Sbjct: 13 QKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAFLVAILERKLNMV 67 Query: 232 SHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 S ++ +G EL + +CV M + ++ + N Sbjct: 68 SKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYKEQVEHHN 122 >gi|330990113|ref|ZP_08314093.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1] gi|329762801|gb|EGG79265.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1] Length = 1696 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 68/249 (27%), Gaps = 58/249 (23%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 TP +V +++ + +P CGTG F+ + Sbjct: 149 AHYTPELMVRSLWDMVM--------RMGFSGGRVLEPGCGTGLFIATRPEKLE------- 193 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 + G E +P T + A ++ I+Q G+R+ Sbjct: 194 --GRVAFTGIENDPLTARIARA------------LYPNQWIRQED--FTKTLPGERYELA 237 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPPF + + D + + + F+ L GG Sbjct: 238 IGNPPFSSRTVRGADTIGRLRLSLHDH---------------FIARSVEALRP----GGI 278 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412 A V S L R + + V LP T + + +L Sbjct: 279 AVFVTSRHTLDRRD-----GTARTHIAAMADLLGAVRLPQGAMKDEAGTEVVVDIVVLRR 333 Query: 413 RKTEERRGK 421 R + G Sbjct: 334 RMVGDVPGD 342 >gi|302186858|ref|ZP_07263531.1| type II restriction enzyme, methylase subunit [Pseudomonas syringae pv. syringae 642] Length = 728 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 7/118 (5%) Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I R E + + TP + L K + T+ +P G+ FL Sbjct: 555 FIYRLAGRAREKSASYYTPEVLTKCLVEHALKEILPGKKADEILNLTVCEPAMGSAAFLN 614 Query: 222 D-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274 + A ++ + +E + + + + ++ +P Sbjct: 615 EAVSQLAEAYLQAKQKELGRTIPHEQYTEEKQRVKMFIADSN--VFGVDLNPIAVELA 670 >gi|146319984|ref|YP_001199695.1| adenine-specific DNA methylase [Streptococcus suis 98HAH33] gi|253751046|ref|YP_003024187.1| hypothetical protein SSUSC84_0128 [Streptococcus suis SC84] gi|253752947|ref|YP_003026087.1| hypothetical protein SSU0133 [Streptococcus suis P1/7] gi|253754770|ref|YP_003027910.1| hypothetical protein SSUBM407_0130 [Streptococcus suis BM407] gi|145690790|gb|ABP91295.1| Adenine-specific DNA methylase [Streptococcus suis 98HAH33] gi|251815335|emb|CAZ50906.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251817234|emb|CAZ54962.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251819192|emb|CAR44368.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|292557591|gb|ADE30592.1| Adenine-specific DNA methylase [Streptococcus suis GZ1] gi|319757300|gb|ADV69242.1| adenine-specific DNA methylase [Streptococcus suis JS14] Length = 317 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 93/294 (31%), Gaps = 48/294 (16%) Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 Y+ L+ + TP + + + L+ + P T+ + GT Sbjct: 68 RAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV-------DQLVPTQKVTVLEIGSGT 120 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G + + + E + + V +LI L + + +I Sbjct: 121 GNL------------------AQTILNASQKELDYLGIEVDDLLI-DLSASIADVMQADI 161 Query: 277 --QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 QG + K L + P G + R+ PK Sbjct: 162 SFAQGDAVRP--QILKESQVILGDLPIGYYP-----------DDQIASRYQVASPKEH-- 206 Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394 + + + L+ G AI+L+ + L ++ WL E I A++ALP Sbjct: 207 TYAHHLLMEQSLKYLEKDGF--AILLAPNDLLTSPQS---DLLKGWLQEQANIVAMIALP 261 Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448 +LF +T +A +++L + V + + +I+ + + Sbjct: 262 PNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQEN 315 >gi|89100073|ref|ZP_01172942.1| Adenine-specific methyltransferase [Bacillus sp. NRRL B-14911] gi|89085163|gb|EAR64295.1| Adenine-specific methyltransferase [Bacillus sp. NRRL B-14911] Length = 311 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 105/312 (33%), Gaps = 50/312 (16%) Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 +Y+ + ++ IF++ ++ L L K ++ + D + ++ Sbjct: 10 TYLEALAETGDNIFQESILQDGLSEL-NVKRLKKSYESLN-----LDLYTSENIRKSFQL 63 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221 I + E + MTP V L L+ K L DP GTG LT Sbjct: 64 AILKGMKE-NVQPNHQMTPDAVGMLTGYLV-------NKFVGAKSFRLLDPAVGTGNLLT 115 Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 + + + + G +++ + + + + Sbjct: 116 TVI--------NQQEGKSIEAVGSDVDDLLIKLAYINANL--------QKHPIQFYNQDS 159 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341 L + LF + +S+ P G + D A + E K E S LFL Sbjct: 160 L-EPLFI-ESVDAVISDLPVGY-YPNDIRAQDYELKADEGH---------SYAHHLFLEQ 207 Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401 + GG IV + LF +++ ++ + +I+ ++ LP LF Sbjct: 208 ---SMRHVKEGGYLFLIVPNG--LFESEQA---DKLKAYISKTSIIQGLLQLPETLFKNK 259 Query: 402 NIATYLWILSNR 413 N A ++IL + Sbjct: 260 NAAKSVFILQKK 271 >gi|327405756|ref|YP_004346594.1| hypothetical protein Fluta_3789 [Fluviicola taffensis DSM 16823] gi|327321264|gb|AEA45756.1| hypothetical protein Fluta_3789 [Fluviicola taffensis DSM 16823] Length = 900 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 41/325 (12%), Positives = 97/325 (29%), Gaps = 63/325 (19%) Query: 39 TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98 L RL + + + F + + + F N L +T + Sbjct: 175 IFLSRLLFCFFAEDTEIFKDKSIFTDTLAQHTAESGKDTHLFLN----DLFDRLNTENAD 230 Query: 99 NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158 +L Y+ F +F +S I + L ++ +L+ + + ++ Sbjct: 231 HLPEYLRKFEYVNGGLFGQ-KIASPIFTSKARKTLIEL------GDLNWSEINPDIFGSM 283 Query: 159 YEHLIRRFGSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIR---------- 207 + ++ + + T + ++ L L LD ++ + + + Sbjct: 284 IQAVVDK---DYRSDLGMHYTSVENILKLIKPLFLDELYDAYENATTINQLRALIKRISK 340 Query: 208 -TLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------------PILVPHGQELEPE 250 +DP CG+G FL + + +G E++ Sbjct: 341 IKFFDPACGSGNFLIITYKEIRLLEIKILEKITDLEGQSPTIKWTEIQLSQFYGIEIDDF 400 Query: 251 THAVCVAGMLIRRLESDPRRD----------------LSKNIQQGSTLSKDLFT-----G 289 H + + + + + + + + I+QG+ +D Sbjct: 401 AHEMAILSLWLAEHQMNKVFEERLFDYGKSKPILPLKEAGQIKQGNATRRDWNEVCPISS 460 Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEK 314 Y + NPP+ +D+ E Sbjct: 461 TDEVYVIGNPPYLGYSRQDETQKED 485 >gi|291276949|ref|YP_003516721.1| restriction /modification enzyme [Helicobacter mustelae 12198] gi|290964143|emb|CBG39988.1| possible restriction /modification enzyme [Helicobacter mustelae 12198] Length = 1286 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 9/115 (7%) Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201 + IY + S + F TP + L + Sbjct: 448 QKDCKIHRTEQYKKGQIYL----KNTSNSRKSTASFYTPESITKFLVQSAL---KDRLND 500 Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAV 254 S + + D CG+G FL A+ + P + + QE + + Sbjct: 501 SNILHFKILDNACGSGHFLITALQAITSIIQEDFESFPALKNLYEQEKQSVQKNI 555 >gi|225868848|ref|YP_002744796.1| helicase [Streptococcus equi subsp. zooepidemicus] gi|225702124|emb|CAW99793.1| putative helicase [Streptococcus equi subsp. zooepidemicus] Length = 2916 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 59/257 (22%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ D + + +P+ G G F+ + + + Sbjct: 1179 FYTPKTVI--------DGVYKTLSDMGFKQGNILEPSMGIGNFIGNLPDEMRRSK----- 1225 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G EL+ + + + I+ + F+ F + Sbjct: 1226 -----FYGVELDSISGRIGKL----------LYPESDIQIKG---FEETTFSNNFFDAVI 1267 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D++ + K GG Sbjct: 1268 GNVPFGEYKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGVI 1307 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +RR+L + LP D F T + + + L R Sbjct: 1308 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGTAGTEVTSDIIFLKKR 1362 Query: 414 KTEERRGKVQLINATDL 430 + R + + A D Sbjct: 1363 DSVLERDEDWIHLAEDE 1379 >gi|157952320|ref|YP_001497212.1| hypothetical protein NY2A_B016L [Paramecium bursaria Chlorella virus NY2A] gi|2454654|gb|AAC03124.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus NY2A] gi|155122547|gb|ABT14415.1| hypothetical protein NY2A_B016L [Paramecium bursaria Chlorella virus NY2A] Length = 368 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 56/246 (22%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226 E F TP+ V ++DP + +P+CGTG ++D ++ Sbjct: 15 SKEKKSKQGIFFTPKSVREKLFGYVVDPK------------NILEPSCGTGEIISDCIDR 62 Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 P G EL+ + + VC + I L Sbjct: 63 ----------FPSANITGVELDEDIYDVCK----------RTYTRENVTIINDDFL---A 99 Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 + G++F + + NPPF + + K+ GR S L++ L + Sbjct: 100 WKGEKFDFIVGNPPFVVRPKGHKND-----DRIVRGR-----------SNLYVEFLFKCI 143 Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 G A ++ IR+ ++ D++ + L F TN Sbjct: 144 TEHLKEDGILAFIIP----STIGNSKFYEPIRKLIITLDILSFEI-LDKHEFCDTNTRLC 198 Query: 407 LWILSN 412 ++ N Sbjct: 199 SIVIKN 204 >gi|157130331|ref|XP_001655665.1| hypothetical protein AaeL_AAEL011749 [Aedes aegypti] gi|108871917|gb|EAT36142.1| conserved hypothetical protein [Aedes aegypti] Length = 305 Score = 39.2 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 49/176 (27%), Gaps = 25/176 (14%) Query: 159 YEHLIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216 +E ++ E ++TP + + D L + + D CG Sbjct: 103 FEEFLQTVDGFENPKVTLEQYITPSHIASHMLYTIQTNYDDL------ENKLVLDLGCGA 156 Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276 G A + G E++ + + I E D I Sbjct: 157 GMLSVGAA-----------LLGAAHVVGVEIDADAIEIFKGN--IEGFELDNVDC----I 199 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 Q +D+ +F L NPPFG K D R L K S Sbjct: 200 QWDVLGMEDIDFEHKFDTVLMNPPFGTKQNSGIDMKFLRIGLALADRSVYSLHKTS 255 >gi|302663036|ref|XP_003023166.1| hypothetical protein TRV_02688 [Trichophyton verrucosum HKI 0517] gi|291187148|gb|EFE42548.1| hypothetical protein TRV_02688 [Trichophyton verrucosum HKI 0517] Length = 332 Score = 39.2 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 28/229 (12%) Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFG 167 I E F F + ++ A + + + F+ +P T + V+ IY + R+ Sbjct: 117 EIIESFSFLAFEGPIKMVDADEKFCVFEEFAHQLASSGNPKTHTEPVLKRIY---LGRWV 173 Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225 +E + R + + + + YDP GTG FL A + Sbjct: 174 TEGGRTEINTYNLKKRKYISTTSMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233 Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 A ET + L S + T + D Sbjct: 234 FGAVTCGSDIDGRSFRGKEATSNTETGVIA--NFKQYGLLS----------RFLDTFTSD 281 Query: 286 LF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 L + + F + +PP+G + + + + GEL F G+P Sbjct: 282 LTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMFQ-GVP 329 >gi|77460845|ref|YP_350352.1| hypothetical protein Pfl01_4624 [Pseudomonas fluorescens Pf0-1] gi|77384848|gb|ABA76361.1| putative N-6 Adenine-specific DNA methylase protein [Pseudomonas fluorescens Pf0-1] Length = 448 Score = 39.2 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 19/143 (13%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + F T + A P + + DPTCG+G L A ++ Sbjct: 69 RESGVFFTSDALAEKAINSFNSPINDRAL--------VVDPTCGSGSLLVAASRKLSVMP 120 Query: 232 SHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRL--------ESDPRRDLSKNIQQGST 281 + G ++ PE +++ L +L NI G Sbjct: 121 LASETLKKWGKQLCGIDIFPEFVYCTKLRLVLESLVRGAIADKNLSELLNLLTNIHSGDC 180 Query: 282 LSKDLFTGKRFHYCLSNPPFGKK 304 L K H L NPP+ Sbjct: 181 LDNTAIIAKATHLAL-NPPYNNS 202 >gi|326475662|gb|EGD99671.1| RNA methylase [Trichophyton tonsurans CBS 112818] Length = 447 Score = 39.2 bits (90), Expect = 2.7, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 87/264 (32%), Gaps = 35/264 (13%) Query: 85 EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI- 143 + + T ST T I SFS A F I ++ A + + + F+ Sbjct: 100 RFDVDTYASTRTAKERNEIIESFSFLA--------FEGPI-KMVDADEKFCVFEEFAHQL 150 Query: 144 --ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT--PRDVVHLATALLLDPDDALF 199 +P T + V+ IY + R+ +E + R + + + Sbjct: 151 ASSGNPKTHTEPVLKRIY---LGRWVTEGGRTEINTYNLKKRKYISTTSMDAELSLISAN 207 Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 + YDP GTG FL A + A +T Sbjct: 208 MTHAAPGKLFYDPFVGTGSFLVAAAHFGAVTCGSDIDGRSFRGKEATSHIDT-------- 259 Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314 + S+ ++ + + T + DL + + F + +PP+G + + Sbjct: 260 ---GVISNFKQYGLLS-RFLDTFTSDLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKD 315 Query: 315 EHKNGELGRFGPGLPKISDGSMLF 338 + + GEL F G+P + +F Sbjct: 316 DSRKGELMMFQ-GVPSYKRENYIF 338 >gi|168206971|ref|ZP_02632976.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str. JGS1987] gi|170661641|gb|EDT14324.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str. JGS1987] Length = 1975 Score = 39.2 bits (90), Expect = 2.7, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 71/253 (28%), Gaps = 59/253 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + S + TP+ V+ + +P+ G G F + Sbjct: 464 EEYESARASTLNAHYTPKVVIDSIYK--------ALNRFGFREGNILEPSMGIGHFFSRL 515 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + + +G EL+ + + ++ S I+ Sbjct: 516 PDSM----------SNSKLYGVELDDISGRISK----------QLYQNASIEIKG---YE 552 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F+ F + N PFG DKD + + F Sbjct: 553 ETTFSNNFFDVAIGNIPFGDYKVFDKDFNKNNFLIHDY----------------FFAKTL 596 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 +KL+ G A V S + S +R +L E + LP + F Sbjct: 597 DKLKE----NGIVAFVTSKGTM-----DKANSSVREYLSERADFIGAIRLPKNTFKSSAN 647 Query: 401 TNIATYLWILSNR 413 T + T + L + Sbjct: 648 TEVTTDIIFLQKK 660 >gi|110005770|emb|CAL00075.1| hypothetical protein SPICINP17_004 [Spiroplasma citri] Length = 210 Score = 39.2 bits (90), Expect = 2.7, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 60/257 (23%) Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 + I R ++ TP ++ LL + ++DP G G Sbjct: 1 MYRIDRNNYFDNQKKSTVYTPNELSEYLFNLL----KDKISKG-----YIFDPCVGKGSL 51 Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279 L G E ++ ++ + + + ++ Sbjct: 52 L-----------------KPWGKAGWE--------------VKGVDIENQGFKNTILKNY 80 Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 ++ D K+ + NPPF + + + K G F P + Sbjct: 81 LEITLDNLDNKKPALIVMNPPFNIDIKTQEYIKNNKEKFGSSRPFLPEV----------- 129 Query: 340 MHLANKLELPPNGGGR-AAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPTD 396 L+ G+ I++ + F S + + ++ND I +I++LP D Sbjct: 130 -----WLKKVIELFGKNIPILMFTPYGFRLNPTSKSARW-KRFIKNDYPEISSIISLPKD 183 Query: 397 LFFRTNIATYLWILSNR 413 ++ + + I + Sbjct: 184 IYKEVMFHSEIIIYNIN 200 >gi|255973332|ref|ZP_05423918.1| SNF2 family protein [Enterococcus faecalis T1] gi|255964350|gb|EET96826.1| SNF2 family protein [Enterococcus faecalis T1] Length = 2266 Score = 38.8 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 51/243 (20%) Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 L++ K + DP GTG F + + + +G E++ Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPSEMREQSE---------LYGVEIDS 782 Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309 + + + K + Q + LFT ++N PF D Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829 Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 ++K + + + + GG A++ SS + Sbjct: 830 KTLKKYYIHDY---------------------FIKRSIDLVHEGGIVAVITSSGTMDKKD 868 Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426 A R+ L + V LP F T + T + + + + QL+ Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKHSGIQEQAEEQLLE 923 Query: 427 ATD 429 Sbjct: 924 RRQ 926 >gi|29350157|ref|NP_813660.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482] gi|29342069|gb|AAO79854.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482] Length = 1320 Score = 38.8 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 20/131 (15%) Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLAN 344 + F SN PFG D+D E + + S S+ + + Sbjct: 67 PYYNNYFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFL 113 Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTN 402 K + GG A + +S + + + +R WL+ + + + + LP +LF T Sbjct: 114 KGMDTLHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTE 169 Query: 403 IATYLWILSNR 413 +++ L +L Sbjct: 170 VSSDLIVLQKN 180 >gi|237750669|ref|ZP_04581149.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879] gi|229373759|gb|EEO24150.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879] Length = 2282 Score = 38.8 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 57/404 (14%), Positives = 121/404 (29%), Gaps = 71/404 (17%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 + TP +V L + +P+ G+G FL + Sbjct: 146 AYYTPTPIVESMVKL-------AKDLGLNNNHVILEPSSGSGRFL-------------GQ 185 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 G EL+P T + + + D + Q S +KD F + Sbjct: 186 FHSNANVVGIELDPFTAKLSQT------IYPYFKIDNAG--FQNSKFAKDDF----YDLV 233 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 + NPP+ +D+ H F+ +KL + GG Sbjct: 234 IGNPPYSNFTIRDEAFSASAHNY-------------------FMKRGIDKLRV----GGI 270 Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415 + +++ S + S +R+ + +N V LP + F ++ T + + Sbjct: 271 SIQIVTKSFM-----DSSNDLVRKEIAKNAKFLGGVRLPNNAFKDASVTTDILVFKKVSA 325 Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTFG 474 E + ++ + + T+ N + D+ + + ++ + G +++ Sbjct: 326 AEAKK----LDNSWIETTELNGIPVSKYFVDNPQNVLGEMKVGKGQFGDIVHVINKEGID 381 Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534 + ++ L + D L + + K DI M + + Sbjct: 382 FSNFDLMPYLNKKYDFDTLRLK--DNNTHSLKDLESEVKTTQDITDSQMGAVRYDKEQDK 439 Query: 535 FVKESIKSNEAKTLKVKASKSFIV----AFINAFGRKDPRADPV 574 F+K S++ LK + A + Sbjct: 440 FIKNDGGSDDELDLKEYLQSLEVTWKPETIEKRIAEYKELAPKI 483 >gi|254976974|ref|ZP_05273446.1| putative helicase [Clostridium difficile QCD-66c26] gi|255651892|ref|ZP_05398794.1| putative helicase [Clostridium difficile QCD-37x79] gi|260687151|ref|YP_003218285.1| putative helicase [Clostridium difficile R20291] gi|260213168|emb|CBE04620.1| putative helicase [Clostridium difficile R20291] Length = 2909 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 73/257 (28%), Gaps = 59/257 (22%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ D + + +P+ G G N + + Sbjct: 1179 FYTPKTVI--------DGIYKTLSDMGFKQGNILEPSMGIG-------NFIGNIPDEMNK 1223 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G EL+ + + + I+ L + F+ F + Sbjct: 1224 SK---FYGIELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDAVI 1267 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D++ + + K GG Sbjct: 1268 GNIPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1307 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +RR+L + LP D F T + + + L R Sbjct: 1308 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGIAGTEVTSDIIFLKKR 1362 Query: 414 KTEERRGKVQLINATDL 430 + R + + A D Sbjct: 1363 DSIRERDEDWIHLAEDE 1379 >gi|225620242|ref|YP_002721499.1| hypothetical protein BHWA1_01316 [Brachyspira hyodysenteriae WA1] gi|225215061|gb|ACN83795.1| hypothetical protein BHWA1_01316 [Brachyspira hyodysenteriae WA1] Length = 438 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 17/195 (8%) Query: 284 KDLFTGKRFHYCLSNPPFG----KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--L 337 K++F G F + NPP+ W D + + + ++ L Sbjct: 22 KNIFKGGGFDVVIGNPPYVFIKYVDWADDVKGYFSSNYDITNKDNKSKSNQSGKINLYTL 81 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 F+ L+ G + ++ + L + R+++L+N I+ I L + Sbjct: 82 FIFRAIKLLKE----NGVFSFIVPNGLLRT----TTYDMARKFILDNYHIDFIADLKDGV 133 Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457 F T ++ S ++I+A L NE K + + + Sbjct: 134 FKGVTAPTIIFKFSK---SCSNDDTKIIDANCLVDGFVNESKYHYMNQSVFLKNTSYAFN 190 Query: 458 SRENGKFSRMLDYRT 472 + K + + Sbjct: 191 IFLDSKENTFFEKIE 205 >gi|310831386|ref|YP_003970029.1| putative DNA methyltransferase [Cafeteria roenbergensis virus BV-PW1] gi|309386570|gb|ADO67430.1| putative DNA methyltransferase [Cafeteria roenbergensis virus BV-PW1] Length = 550 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 28/201 (13%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 I + F + I ++ +I + + + ++ I ++LI + + Sbjct: 328 KIIKKF-INVYIKYMKDDKETNQIIRTIKDLFMKNVNNSKQLGELIDKYLIPQ--ELEKK 384 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH------ 226 + TP + + K +++P G GGF+ D ++ Sbjct: 385 SNAEVSTPFKLRQEMLDKMPIEFWKSKK-------KVFEPCAGKGGFIVDIIDRFMNGLK 437 Query: 227 --VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283 + D +K + ++ P +C L DP + N +G+TL Sbjct: 438 KTIPDEKKRYKTIVEKCLYFSDINPTNIFICK-------LLIDPYNEYKLNYNEGNTLEL 490 Query: 284 --KDLFTGKRFHYCLSNPPFG 302 K+ + F + NPP+ Sbjct: 491 NIKEKWGIDYFDAVIGNPPYN 511 >gi|319897177|ref|YP_004135372.1| n5-glutamine methyltransferase, modifies release factors rf-1 and rf-2 [Haemophilus influenzae F3031] gi|317432681|emb|CBY81044.1| N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 [Haemophilus influenzae F3031] Length = 292 Score = 38.8 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 34/214 (15%) Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR + L +E+P + D GTG + ++ K Sbjct: 94 PRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELSSIC--QKRLIS 150 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 L G +L P+ A+ + N++ + D TG +F +SNP Sbjct: 151 LEIIGVDLMPDVVALAQSN----------AERNQLNVEFLQSCWFDNITG-KFDLIVSNP 199 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAI 358 P+ + EH + RF P +++ L H+ N G Sbjct: 200 PYI--------DAQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNGVL-- 249 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390 L GE ++R EN +E + Sbjct: 250 ------LLEHGWQQGE-KVRSIFQENHWEMVETV 276 >gi|225859801|ref|YP_002741311.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585] gi|225721361|gb|ACO17215.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585] Length = 317 Score = 38.8 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + L+ AI L+ S L ++ WL E + A+++LP + Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263 Query: 397 LFFRTNIATYLWILSNR 413 LF N + ++IL + Sbjct: 264 LFANANQSKTIFILQKK 280 >gi|296110509|ref|YP_003620890.1| hypothetical protein LKI_01890 [Leuconostoc kimchii IMSNU 11154] gi|295832040|gb|ADG39921.1| hypothetical protein LKI_01890 [Leuconostoc kimchii IMSNU 11154] Length = 220 Score = 38.8 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 27/222 (12%) Query: 104 IASFSDNAKAIF---EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160 I + S IF E F + ++ + + + Y+ Sbjct: 2 IKTASKTIHEIFGVKESFKLPDEMMKI--------VLDKEKRETAMMRYLDEYTRDLSYD 53 Query: 161 HLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 + E + + + TP + + + ++ G + Y+PT GTGG Sbjct: 54 GFHEYYEEEQAERKKNKQDFTPDSISDILSKIV------------GTSNSYYEPTAGTGG 101 Query: 219 FLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNI 276 L + P + +EL + + IR + + D+ Sbjct: 102 MLIRKWHQDQMATSPFDYKPSNYLFFAEELSDRALPFLIFNLAIRGINAAVVHGDVLTRE 161 Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318 +G ++ ++ P+ + +K + E + Sbjct: 162 ARGVFFIQNDNDDFLGFSSVNIMPYSDEVKKYFGIQKWEGEK 203 >gi|157953703|ref|YP_001498594.1| hypothetical protein AR158_C513L [Paramecium bursaria Chlorella virus AR158] gi|156068351|gb|ABU44058.1| hypothetical protein AR158_C513L [Paramecium bursaria Chlorella virus AR158] Length = 369 Score = 38.8 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 79/251 (31%), Gaps = 64/251 (25%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 ++ G + F TP+ + ++ +P ++ +P+CG+G FL D Sbjct: 12 KKLGMKHRSKMGIFFTPKSLR----DIVFQH----IHINPQ---SVLEPSCGSGEFLIDC 60 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 D G EL+ V I L+ Sbjct: 61 ETRFPDAN----------ITGVELDVTLAQVSKEN------------TTRTIIHTQDFLT 98 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 F G +F + NPPF + ++ +K GR S L++ L Sbjct: 99 ---FVGGKFDLIIGNPPFVQ--------MKAVNKQASTGR-----------SNLYIEILF 136 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFFRT 401 + N G A+VL S+ + G R +L +I E I F T Sbjct: 137 KCMTQHLNDNGVLAMVLPSTIMN----GHFSRPTRELILSKKIIHFETI---RDHTFKDT 189 Query: 402 NIATYLWILSN 412 + ++ N Sbjct: 190 KAGVSILVVQN 200 >gi|322510888|gb|ADX06201.1| putative site-specific DNA-methyltransferase [Organic Lake phycodnavirus 2] Length = 1369 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 13/147 (8%) Query: 168 SEVSEGAEDFMTPRDVV--HLATAL-LLDPDDALFKESPGMIRTLYDPTCGTGGFLTD-- 222 + + TP + + L + + D T G G F Sbjct: 906 EVEKKKFGEVFTPMSFINNDMLGDLEIYYKEKYNKNIFEDETLKWGDTTAGMGNFPIAIY 965 Query: 223 --AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 M+ + + K + E + I + + + N+ +G Sbjct: 966 YKLMDGLKKKIPNDKNRKKHILEKMLFMAENN---KKNCFIVKQIFNMNNEFKLNLYEGD 1022 Query: 281 TLSKD---LFTGKRFHYCLSNPPFGKK 304 +L D F +F + NPP+ ++ Sbjct: 1023 SLQLDIQKEFGIDKFDIVIGNPPYNEE 1049 >gi|307284206|ref|ZP_07564374.1| hypothetical protein HMPREF9515_02281 [Enterococcus faecalis TX0860] gi|306503362|gb|EFM72612.1| hypothetical protein HMPREF9515_02281 [Enterococcus faecalis TX0860] Length = 244 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%) Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 + + TP+ +V + + + + T +P G G FL + + Sbjct: 13 QKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAFLLVILERKLNMV 67 Query: 232 SHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275 S ++ +G EL + +CV M + ++ + N Sbjct: 68 SKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYKEQVEHHN 122 >gi|332281071|ref|ZP_08393484.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp. D9] gi|332103423|gb|EGJ06769.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp. D9] Length = 1003 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 83/254 (32%), Gaps = 36/254 (14%) Query: 50 PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109 V + + ++ ++G F N +Y+ S + ++N+ + + +Y+ + + Sbjct: 175 DDEYKVLYALQTAYAIIVKIIAYKTLSGLVFEN--DYNFSDMINSNSES-MRNYLYTLEE 231 Query: 110 NAKAIFEDFDFSSTIA-----------------RLEKAGLLYKICKNFSGIELHPDTVPD 152 A IF + + + + + + + G Sbjct: 232 GA--IFRKYGILNLLEGDFFSWYCTKEQWGDDIFISIKNIFSLLSEYEEGNLFKEGEKVY 289 Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212 + ++Y ++I +V +F TP LA L+ ++ + +S T DP Sbjct: 290 DLFKDLYMNII---PDKVRHSLGEFYTPE---WLAEHLISSAEEHVVNKSN---WTAIDP 340 Query: 213 TCGTGGFLTDA-MNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLE-SD 267 CG+G F+ ++ + K V G +L P I D Sbjct: 341 CCGSGTFIITLIGKVLSRTHADSKAKLKDVITSVKGIDLNPLAALTARINYFINISHLLD 400 Query: 268 PRRDLSKNIQQGST 281 ++ I G Sbjct: 401 DGSEVEIPIYLGDA 414 >gi|254497856|ref|ZP_05110622.1| protein methyltransferase HemK [Legionella drancourtii LLAP12] gi|254352934|gb|EET11703.1| protein methyltransferase HemK [Legionella drancourtii LLAP12] Length = 261 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 47/165 (28%), Gaps = 37/165 (22%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 R F S + + PR L L L+ K + + G+G Sbjct: 60 REFWSLNLKVNRHTLIPRHETELLVELALE------KLPNSPNTCILELGTGSGAIALAL 113 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES--DPRRDLSKNIQQGST 281 K P ++ E + L +L + D NI Sbjct: 114 ----------AKERPQWHIVACDVSEEALLIAKENALHHQLSNVTFYHSDWYSNI----- 158 Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326 +++H +SNPP+ + + H N RF P Sbjct: 159 ------PQQQYHAIISNPPYIAE--------QDPHLNEGDLRFEP 189 >gi|255690417|ref|ZP_05414092.1| putative DNA methylase [Bacteroides finegoldii DSM 17565] gi|260624100|gb|EEX46971.1| putative DNA methylase [Bacteroides finegoldii DSM 17565] Length = 1926 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 57/245 (23%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ +L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ +Q + K F Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351 +SN PFG D + E + + S + FL K Sbjct: 194 VSNIPFG-----DVAVFDPEFSGSKDP------ARHSAARTIHNYFFL-----KSLDAVR 237 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408 GG A + S L + IR +++ + + + LP +LF T + + L Sbjct: 238 EGGIVAFITSQGVL----DAPTNAPIREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLI 293 Query: 409 ILSNR 413 IL Sbjct: 294 ILQKN 298 >gi|254426203|ref|ZP_05039920.1| hypothetical protein S7335_771 [Synechococcus sp. PCC 7335] gi|196188626|gb|EDX83591.1| hypothetical protein S7335_771 [Synechococcus sp. PCC 7335] Length = 1329 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 26/140 (18%) Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAM 224 E TPR + L P P + + D G+ FL + Sbjct: 513 EERRRTGSHYTPRKLTQPIVETTLRPIFERLGSQPTAEQILELKVCDLAMGSAAFLVEVC 572 Query: 225 NHVAD---------------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 +A+ ++ +G + P + + + Sbjct: 573 RQLAERLVAAWDYYGMPEDVPDAVEPLLYARRLVAQRCLYGVDKNPFAVNLAKLSLWLVT 632 Query: 264 LESDPRRDLSKN-IQQGSTL 282 L D + ++ G +L Sbjct: 633 LARDLPFTFVDHALKCGDSL 652 >gi|121592630|ref|YP_984526.1| type III restriction system methylase [Acidovorax sp. JS42] gi|120604710|gb|ABM40450.1| type III restriction system methylase [Acidovorax sp. JS42] Length = 213 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 29/144 (20%) Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VA 228 + TP +V L+ D + + +P CG+G F+ + V Sbjct: 12 DHGEVFTPPWMVEAMLDLVKDE-------AERIDARFLEPACGSGNFIVQILRRKLAAVE 64 Query: 229 DCGSHHKIPPILV-------PHGQELEPETHAVCVAGML------IRRLESDPRRDLS-- 273 +G EL + A C A +L ++ E+D + Sbjct: 65 RKYGKSDFERRHYALLGLMCIYGIELLADNIAECRANVLEVFADYLQLDEADDLYRAALY 124 Query: 274 ---KNIQQGSTLSKDLFTGKRFHY 294 +N+ G L+ G+ + Sbjct: 125 VLLQNLVHGDALTMRDHHGQAITF 148 >gi|282600630|ref|ZP_05979275.2| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] gi|282571651|gb|EFB77186.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] Length = 1683 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 61/256 (23%), Gaps = 60/256 (23%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + S T V+ + + +P+ G G F Sbjct: 959 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1010 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 + +G EL+P + + + +I G Sbjct: 1011 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1046 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F + N PFG+ DK + Sbjct: 1047 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFNIHNY--------------------FF 1086 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402 K GG A V + +S +RR+L + + + LP D F Sbjct: 1087 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1141 Query: 403 IATY--LWILSNRKTE 416 + L R Sbjct: 1142 AEVVSDIIFLQKRDRP 1157 >gi|209879984|ref|XP_002141432.1| hypothetical protein [Cryptosporidium muris RN66] gi|209557038|gb|EEA07083.1| hypothetical protein, conserved [Cryptosporidium muris RN66] Length = 1601 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 54 AVREKYLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASFS-DN 110 + + Y SN+ +F +V SF+N S L + + + Y+A S Sbjct: 542 ELLKLYKDSIESNLTDNNFKQVE-MSFFNVMESIEDRMKLLDSKIQLLSDDYVAQLSNRE 600 Query: 111 AKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168 K+IFE +D S+ A+L L + + +R + +Y L+R+F Sbjct: 601 CKSIFEKYDKIISNIKAKLPDNELFDTLLRK-----GVELNEQERQLGQLYALLMRKFTD 655 Query: 169 E 169 E Sbjct: 656 E 656 >gi|160890942|ref|ZP_02071945.1| hypothetical protein BACUNI_03387 [Bacteroides uniformis ATCC 8492] gi|156859941|gb|EDO53372.1| hypothetical protein BACUNI_03387 [Bacteroides uniformis ATCC 8492] Length = 1926 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 57/245 (23%) Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 F TP ++ +L + + +P+ G G F+ + V + Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151 Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295 I ++ ++ +Q + K F Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193 Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351 +SN PFG D + E + + S + FL K Sbjct: 194 VSNIPFG-----DVAVFDPEFSGSKDP------ARHSAARTIHNYFFL-----KSLDAVR 237 Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408 GG A + S L + IR +++ + + + LP +LF T + + L Sbjct: 238 EGGIVAFITSQGVL----DAPTNAPIREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLI 293 Query: 409 ILSNR 413 IL Sbjct: 294 ILQKN 298 >gi|114799218|ref|YP_760309.1| hypothetical protein HNE_1600 [Hyphomonas neptunium ATCC 15444] gi|114739392|gb|ABI77517.1| conserved domain protein [Hyphomonas neptunium ATCC 15444] Length = 692 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 31/191 (16%) Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------------GQELEPETHA 253 + DP CG+G FL ++ + D + G E+ P Sbjct: 92 FRVLDPACGSGNFLYLSLKALKDIEHRANVEFEAFGFARRPPKVGPEAVKGIEINPYAAE 151 Query: 254 VCVAGMLIRRLE----------SDPRRDLSKNIQQGST-LSKDLFTGKR--FHYCLSNPP 300 + + I ++ ++P NI+ L+ D + + NPP Sbjct: 152 LARVSIWIGEIQWMRANGFEATTNPILKPLNNIECRDAVLNPDGTRAEWPDVDVVVGNPP 211 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F ++ +D + + + + + + ++ + + RA +V Sbjct: 212 F-LGGKRLRDELGGHYVDTLFSAWRASVRP--EADLVLYWFARSGELIQTGRLKRAGLVS 268 Query: 361 SSSPLFNGRAG 371 ++S G A Sbjct: 269 TNSI--RGGAN 277 >gi|184160031|ref|YP_001840899.1| hypothetical protein ACICU_p0045 [Acinetobacter baumannii ACICU] gi|301598019|ref|ZP_07243027.1| hypothetical protein AbauAB059_19438 [Acinetobacter baumannii AB059] gi|183211625|gb|ACC59021.1| Uncharacterized conserved protein [Acinetobacter baumannii ACICU] Length = 136 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 11/93 (11%) Query: 103 YIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 Y F+ N + + + RL+ L Y + P V+ +IY Sbjct: 54 YQNLFNHNIENEYLQRINRYDVSGRLKIKKLFYLLVDL-----CEAKGEPYDVLGSIYME 108 Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194 L ++ + TP +V +L ++ P Sbjct: 109 L-----EIGNDHIGQYFTPSEVSNLCAQVVDRP 136 >gi|313115905|ref|ZP_07801333.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255] gi|310621773|gb|EFQ05300.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255] Length = 1922 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 15/143 (10%) Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL-----MHLANKLELPPNGG 353 P + ++ + +G G K++D + L + K G Sbjct: 459 PQADITVAGFETTDRRDFYDLAVGNVPFGQYKVNDKAYNKLGFSIHNYFFAKTIDQIRPG 518 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWIL 410 G A V S + S +S R+++ E + + LP + F T + + + L Sbjct: 519 GVIAFVTSRFTM-----DSKDSSARKYMAERADLLGAIRLPNNAFKANASTEVVSDILFL 573 Query: 411 SNRKTEER--RGKVQLINATDLW 431 R VQL D + Sbjct: 574 QKRDRPADIEPAWVQLGQTEDGF 596 >gi|194898525|ref|XP_001978827.1| GG12428 [Drosophila erecta] gi|190650530|gb|EDV47785.1| GG12428 [Drosophila erecta] Length = 488 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 13/203 (6%) Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 HLI+ + + + + L + D L ++DP GTG L Sbjct: 180 HLIKELSLKQRKFIGNTSMDAQLSLLMANQAMVRDGDL----------VFDPFVGTGSLL 229 Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 A ++ + + L+ D ++ Sbjct: 230 VSAAKWGGYVLGADIDYMMVHARCRPSRITQKVREKDESIRANLKQYGCADRYMDVVVAD 289 Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 S ++ + F +++PP+G + +K + + P S S+ L Sbjct: 290 -FSNPVWDSRISFDSIITDPPYGIREATEKVEKKISLRADTRSENMVHYPSTSHYSLQSL 348 Query: 340 M-HLANKLELPPNGGGRAAIVLS 361 L GGR L Sbjct: 349 YGDLLEFAAKHLKMGGRLVCWLP 371 >gi|251772067|gb|EES52637.1| putative helicase [Leptospirillum ferrodiazotrophum] Length = 1618 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 61/238 (25%), Gaps = 31/238 (13%) Query: 171 SEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 +E TP +VV K + DP GTG FL + Sbjct: 845 AERVGIVYTPVEVVDFILKSADGILRKHFEKGLTDSDIHILDPFTGTGTFLVRLLQSGII 904 Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQQGSTL----SK 284 H E+ + + + + R + I T + Sbjct: 905 HPGDLLRKYQEELHANEIVLLAYYIASINIESAFHDLTERPYEAFPGIVLTDTFQLGEKE 964 Query: 285 DLFTGKRF----------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 F G+ F + NPP+ + + D + R Sbjct: 965 SPFFGRVFLPENNERVARQKRAPIRVIVGNPPYSVGQKSENDNSKNRDYPHLDKRIEDTY 1024 Query: 329 PKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381 K S + L+ ++ G V ++S + + +R+ L Sbjct: 1025 AKESSAGLKKSLYDSYIRAIRWASDRIENCGVIGFVTNASFIDSNTTDG----LRKCL 1078 >gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii ATCC 33806] gi|224946756|gb|EEG27965.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii ATCC 33806] Length = 1650 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 61/233 (26%), Gaps = 35/233 (15%) Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172 D + S L Y+ + + +V+ ++YE R + SE Sbjct: 816 DALSDHNVESETDSLVD---FYQSVQRRAEAVNSASGKQ-QVVKDLYETFFRTAFKKQSE 871 Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 TP ++V D F + + DP GTG F+ + Sbjct: 872 ALGIVYTPVEIVDFILRAANDAMRKHFGRTLSDENVHILDPFTGTGTFIVRLLESGLIRP 931 Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLI-----------RRLESDPRRDLSKNIQQGS 280 H E+ + V + + R + +P I Sbjct: 932 EDTARKYAKELHATEIMLLAYYVAAVNIEMTYNSLRAEAAKRDGKPEPEYVPFNGIALAD 991 Query: 281 TLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEK 314 T D K F ++NPP+ + D E Sbjct: 992 TFQVHEDDDTLDLKIFKENNERIERQKTAPIQAIVANPPYSSGQKNANDLNEN 1044 >gi|291556525|emb|CBL33642.1| Type I restriction-modification system methyltransferase subunit [Eubacterium siraeum V10Sc8a] Length = 535 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 29/159 (18%) Query: 264 LESDPRRDLSKNIQQGSTLSKD----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 + ++ + I+ L+ D FT +++ +S P FG + + + Sbjct: 155 IRTELLSVVYAGIKNVKLLAADIYSYGFTTEKYDLIISIPIFGGRVLVNGEDFISREP-- 212 Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 ++ + +L + + N A+VL + F G + + +R Sbjct: 213 ---------------DLIAVQNLLYHINMDGN----LAMVLPAKITFGGGST---AALRE 250 Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417 ++ N I+ I LP LF T+I TYL++ S +T++ Sbjct: 251 YIERNYKIKEISVLPAGLFTPYTSIRTYLFVFSTGRTDD 289 >gi|229829879|ref|ZP_04455948.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM 14600] gi|229791177|gb|EEP27291.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM 14600] Length = 2913 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 72/257 (28%), Gaps = 59/257 (22%) Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236 F TP+ V+ + + +P+ G G N + + Sbjct: 1183 FYTPKAVIDSVYK--------TLSDMGFKQGNILEPSMGVG-------NFIGNIPDEMNK 1227 Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296 +G EL+ + + + I+ L + F+ F + Sbjct: 1228 SK---FYGVELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDAVI 1271 Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356 N PFG+ D++ + + K GG Sbjct: 1272 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1311 Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413 A + +G + +RR+L + LP D F T + + + L R Sbjct: 1312 AFIT-----SSGTMDKKDESVRRYLAARTEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1366 Query: 414 KTEERRGKVQLINATDL 430 + R + + A D Sbjct: 1367 DSIRERDEDWIHLAEDE 1383 >gi|323447042|gb|EGB03008.1| hypothetical protein AURANDRAFT_34620 [Aureococcus anophagefferens] Length = 313 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 10/185 (5%) Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--LVPHG 244 + + D CG G L +V D K G Sbjct: 78 MCNGVFVRVFDDLPLEDQP-AAVADMGCGDGRLLLTLYEYVRDHTKRGKHLDKFPFTVIG 136 Query: 245 QELEPETHAVCVAGMLIRRLESDPR-RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 + E+ V + R + + + D+ L K F S Sbjct: 137 IDFNYESLDVTKETLGSRNIPFEVQWGDIGDPDAAMDELEKRGFPRD------SVLHVRT 190 Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 + D+ + + + + G+ +DG+++ + L A V Sbjct: 191 FIDHDRPYIAPKRPGDDYAMYAHGVYNKNDGTIIDPSTMLQSLVEHLERWSDAVGVHGMC 250 Query: 364 PLFNG 368 L G Sbjct: 251 ILEAG 255 >gi|288549971|ref|ZP_05968806.2| conserved hypothetical protein [Enterobacter cancerogenus ATCC 35316] gi|288316808|gb|EFC55746.1| conserved hypothetical protein [Enterobacter cancerogenus ATCC 35316] Length = 1067 Score = 38.8 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 18/124 (14%) Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209 V+ ++Y+ L+ ++ + +F TP +V + +P M + + Sbjct: 337 QTRDVLRDLYQGLV---PGKLRQSLGEFYTPDWLVDFTLNKVSEPSL--------MTKRV 385 Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIR 262 DPTCG+G FL + + G +L P LI Sbjct: 386 LDPTCGSGAFLLAVIRKKRQLAKEKNLSARETLKLICDTVWGFDLNPLAVQTARVNFLIE 445 Query: 263 RLES 266 + Sbjct: 446 VADL 449 >gi|295428282|ref|ZP_06820911.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590755|ref|ZP_06949393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] gi|295127682|gb|EFG57319.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575641|gb|EFH94357.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] Length = 325 Score = 38.8 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 86/297 (28%), Gaps = 49/297 (16%) Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217 Y L++ + + +TP + + L+ + + D GTG Sbjct: 74 AYLSLMQEEKIQANHQ----ITPDSIGLILGFLV------ERFMNNQEELHIVDIASGTG 123 Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 + + + + +V +A L ++ ++ Sbjct: 124 HLSATVKEVLPEIA------VMHHLIEVDPVLSRVSVHLANFL----------EIPFDVY 167 Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337 + + + + P G E F G S L Sbjct: 168 PQDAIMP--LPLEEADIVIGDFPVGY-------YPIDERSRDFKLGFEEGH---SYSHYL 215 Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 + N L+ A ++ S +F G ++ +++ ++A + LP L Sbjct: 216 LIEQAINALKDAGY-----AFLVVPSNIFTGE---HVKQLEKYIATETEMQAFLNLPPTL 267 Query: 398 FFRTNIATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKR--RIINDDQRRQ 451 F + IL +K+ E + +V L N D + +G D R + Sbjct: 268 FKNEKARKSILILQKKKSGETKSVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPK 324 >gi|325300456|ref|YP_004260373.1| hypothetical protein Bacsa_3375 [Bacteroides salanitronis DSM 18170] gi|324320009|gb|ADY37900.1| hypothetical protein Bacsa_3375 [Bacteroides salanitronis DSM 18170] Length = 1129 Score = 38.8 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 75/265 (28%), Gaps = 66/265 (24%) Query: 29 TDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN------ 82 + + K IL L + + + + F N Sbjct: 260 SKYYKAILQNLFFAMLNSPITKEGETELSERHFRKNRGDYDNNKLMRYESLFANPQLFVD 319 Query: 83 ----TSEYSLSTLGSTNTRNNLESYIASFSDN---------------AKAIF---EDFDF 120 T + L + ++YI FSD AK + + Sbjct: 320 LANRTVPFLNGGLFDCLDDKDADNYIDGFSDRKEVQESLFVPDYIFFAKEVIVDLSHWYE 379 Query: 121 SSTIARLEKAGLLYKICK-NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSE----VS 171 +++ +G+L + + NF+ E P ++ ++E+L+ + E Sbjct: 380 DKKKKKVKVSGILNILKRYNFTIEENTPFDQEVSLDPELLGKVFENLLASYNPETQTTAR 439 Query: 172 EGAEDFMTPRDVVHLATA---------------------LLLDPDDALFKESPGMIR--- 207 + F TPR++V L+ DD + R Sbjct: 440 KQTGSFYTPREIVQYMVDESLVAHLKRTVGEELESQFRQLMQYTDDEVNLTDEQRKRIMQ 499 Query: 208 -----TLYDPTCGTGGFLTDAMNHV 227 + DP CG+G F + + Sbjct: 500 SLYNCKILDPACGSGAFPMGMLQQM 524 >gi|156097604|ref|XP_001614835.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148803709|gb|EDL45108.1| hypothetical protein, conserved [Plasmodium vivax] Length = 276 Score = 38.8 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 12/116 (10%), Positives = 30/116 (25%), Gaps = 9/116 (7%) Query: 36 LPFTLLRRLECALEPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGS 93 L L+++ ++ K + E+ + +N + L + Sbjct: 111 LVLMFLKKISDTYVDDQAKWMNKMRSSQEEQGKALEEAMNEYEKNILFNHALKEQQLLHN 170 Query: 94 TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLL---YKICKNFSG 142 + I + + + + F+ + LEK L Sbjct: 171 NKKISEWNETIENAYEAQQEVLRQFEAKKREDKKKMALEKNNELIIAKDYIDKIKE 226 >gi|297161974|gb|ADI11686.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1] Length = 317 Score = 38.8 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 20/179 (11%) Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 +L + + DP CG G L +A + G E Sbjct: 32 AKMLPAIAAHAIRTYTQPGDLVLDPMCGIGTTLVEA------------VHLGRHAFGTEY 79 Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWE 306 EP+ + + + + + L+ +++PP+G Sbjct: 80 EPKWANMARTNLALAARQGATGKAAVTCTDARHLLTHIPPERHGTAALVITSPPYGPSVH 139 Query: 307 KDKDAVEKEHKNG------ELGRFGPGLPKISDGSML-FLMHLANKLELPPNGGGRAAI 358 + + + G R L ++ +L H+ + GG A + Sbjct: 140 GQVRSTRETGERGVVKNHYRYSRDPHNLAHVATDQLLDAFTHILTQCRTMLRPGGTAVV 198 >gi|189426729|ref|YP_001953905.1| conserved hypothetical protein [Geobacter lovleyi SZ] gi|189422988|gb|ACD97385.1| conserved hypothetical protein [Geobacter lovleyi SZ] Length = 918 Score = 38.8 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 48/214 (22%) Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------LVPHGQELEPE 250 + DP CG+G FL ++ + D + G E+ Sbjct: 368 KTLRVLDPACGSGNFLYLSLIALKDLEHQVTLEAESLGFHPEFLFHAGPWNVMGIEINEY 427 Query: 251 THAVCVAG--------MLIRRLESD--PRRDLSKNIQQGSTLSK-DLFTGK--RFHYCLS 297 + M+ + + P I+ L D + + Sbjct: 428 AAELARVTIWIGELQWMIKHGMAYNTKPILQTMDQIENRDALLNADGTEAHWPQAEVIVG 487 Query: 298 NPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353 NPPF K + +E+ + GR G ++ E G Sbjct: 488 NPPF-LGGSKMLGELGEEYVTTLRKVYKGRVPGG------ADLV-----TYWFEKARETG 535 Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 R+ +V ++S G + E+ + + E I Sbjct: 536 VRSGLVATNSI--RGGSN---REVLKRITETRQI 564 >gi|309804625|ref|ZP_07698690.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308166017|gb|EFO68235.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] Length = 906 Score = 38.8 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 52/201 (25%) Query: 167 GSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT------------LYDPT 213 + T ++ + L LD F + G + DP Sbjct: 286 SEDSRSHLGMHYTSVPNIMKVIKPLFLDELRNEFDKRKGSYKKLQHLYERIGKIKFMDPA 345 Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEP---E 250 CG+G FL + +G E++ + Sbjct: 346 CGSGNFLIVTYKQLRQLEIDILKEQNKILAEEGSGKAMMYLPSVTLDQFYGIEIDDFACD 405 Query: 251 THAVCV------AGMLIRRLESDPRR-----DLSKNIQQGSTLSKDL-----FTGKRFHY 294 T + + + +R ++ R + I G+ L D Y Sbjct: 406 TTRLSLWIAEHQMNIKLRDEINNAVRPTLPLQHAGAIVCGNALRLDWEKILPHKKDDEVY 465 Query: 295 CLSNPPFGKKWEKDKDAVEKE 315 NPP+ + KE Sbjct: 466 LFGNPPYLGSHGAKQKKTHKE 486 >gi|227485134|ref|ZP_03915450.1| conjugative transposon DNA recombination protein [Anaerococcus lactolyticus ATCC 51172] gi|227236967|gb|EEI86982.1| conjugative transposon DNA recombination protein [Anaerococcus lactolyticus ATCC 51172] Length = 2573 Score = 38.8 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 73/270 (27%), Gaps = 59/270 (21%) Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 + + F TP+ V+ D + +P+ G G Sbjct: 1167 SEYEAARDSTLTSFYTPKTVI--------DGVYKTLSGMGFKQGNILEPSMGIG------ 1212 Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 N + + +G EL+ + + +IQ L Sbjct: 1213 -NFIGNLPDEMNKSK---FYGVELDSVSGRIGK------------LLYPESDIQV-KGLE 1255 Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 + F+ F + N PFG+ D++ + Sbjct: 1256 ETGFSNNFFDVAIGNVPFGEYKVNDREYNRNNFLIHDY--------------------FF 1295 Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400 K GG A + +G + +RR+L + LP D F Sbjct: 1296 AKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARTEFIGAIRLPNDTFKGVAG 1350 Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDL 430 T + + + L R + R + + A D Sbjct: 1351 TEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1380 >gi|323136927|ref|ZP_08072007.1| hypothetical protein Met49242DRAFT_1394 [Methylocystis sp. ATCC 49242] gi|322397688|gb|EFY00210.1| hypothetical protein Met49242DRAFT_1394 [Methylocystis sp. ATCC 49242] Length = 733 Score = 38.8 bits (89), Expect = 3.5, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 39/203 (19%) Query: 208 TLYDPTCGTGGFLTDAMNHVADC--------------GSHHKIPPILVPHGQELEPETHA 253 + DP CG+G FL A+ V D + HG E+ P Sbjct: 52 RILDPACGSGNFLYLALQGVKDLEYRVVNECETLGLDRPAMMRVGPEILHGIEINPFAAE 111 Query: 254 VCVAGMLIRRL----------ESDPRRDLSKNIQQGSTLSKDLFTGKRF---HYCLSNPP 300 + + I + P +I+ + + + + NPP Sbjct: 112 LARTTIWIGDIQWGIKNAIYSRPSPILRKLDSIECRDAVLTPEGKEAEWPDADFIVGNPP 171 Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 F + + + + + + +P ++ ++ + R +V Sbjct: 172 F-LGGKLQRKGLGDAYVDMLFKAYDGAVP--AEADLVCYWFSKAWRAVVSGKARRVGLVS 228 Query: 361 SSSPLFNGRAGSGESEIRRWLLE 383 ++S G A R LLE Sbjct: 229 TNSI--RGGAN-------RRLLE 242 >gi|222481172|ref|YP_002567408.1| putative restriction/modification enzyme [Halorubrum lacusprofundi ATCC 49239] gi|222454548|gb|ACM58811.1| putative restriction/modification enzyme [Halorubrum lacusprofundi ATCC 49239] Length = 1432 Score = 38.8 bits (89), Expect = 3.5, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 43/159 (27%) Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-------------------MIR 207 GS + + TP VV L+P + Sbjct: 476 GSGERKATGSYYTPEYVVEYIVENTLEPLVDDIRVDLAGQSARGEDRGFAAEFADRIFDL 535 Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-----------------------ILVPHG 244 + DP G+G FLT A++++A + +G Sbjct: 536 KILDPAMGSGHFLTSAIDYLAREIIDAQERQAAQQGIETVNQEHDINWARRQVAQRCIYG 595 Query: 245 QELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTL 282 +L P + + +R L ++ P L +++ G++L Sbjct: 596 VDLNPLAVELAKVSLWLRTLAAEQPLAFLDHHLKTGNSL 634 >gi|145629733|ref|ZP_01785529.1| HemK [Haemophilus influenzae 22.1-21] gi|144978070|gb|EDJ87849.1| HemK [Haemophilus influenzae 22.1-21] Length = 264 Score = 38.8 bits (89), Expect = 3.5, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 34/214 (15%) Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 PR + L +++P + D GTG + + K Sbjct: 66 PRPDTEVLVEKALQISLEKLEQNP-PHFRILDLGTGTGAIALALASELFSIC--QKRQIS 122 Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 L G +L P+ A+ + E + + ++ +F +SNP Sbjct: 123 LEIIGVDLMPDVVALAQSN-----AERNQLNVQFLQSRWFDNIT------GKFDLIVSNP 171 Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAI 358 P+ V+ EH + RF P + +D L ++ N Sbjct: 172 PYI--------DVQDEHLHQGDVRFEPLSALVANDAGYADLRYIIESAPNYLN------- 216 Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390 + + L GE ++R EN +E + Sbjct: 217 -FNGTLLLEHGWQQGE-KVRSIFQENHWEMVETV 248 >gi|108563868|ref|YP_628184.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori HPAG1] gi|107837641|gb|ABF85510.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter pylori HPAG1] Length = 142 Score = 38.4 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451 +PTDLF + T ++I + + V+ I+ + G + + Sbjct: 1 MPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEE 60 Query: 452 ILDIYVSRENGKFSRML 468 I+ IY + N K S+ L Sbjct: 61 IIKIYKAGLNAKVSKEL 77 >gi|322807393|emb|CBZ04967.1| modification methylase bstVI [Clostridium botulinum H04402 065] Length = 179 Score = 38.4 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 26/173 (15%) Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164 +F DN + IF + +YK + + + + +S Y I+ Sbjct: 2 NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52 Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224 + TP+++ + ++ +D + DP+CG G L Sbjct: 53 -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103 Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277 ++ + + + E + L+++ I Sbjct: 104 FYLKNIFEENLKEINKK---NNINLEKQYISK-----HILDNNLYGFDIDTIA 148 >gi|194745734|ref|XP_001955342.1| GF18712 [Drosophila ananassae] gi|190628379|gb|EDV43903.1| GF18712 [Drosophila ananassae] Length = 4505 Score = 38.4 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 8/127 (6%) Query: 37 PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96 + R LE + + + + G + L + A + + L L Sbjct: 425 GLIKINRTIEVLELFKQRILDYKERYAGHQVLLPALPGGAAAAAASPPPDDLPQLWRFCH 484 Query: 97 RNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHPD 148 + + FS + +FE + +LE GL K+ + F+ ++ + Sbjct: 485 EDVFGQTLDGFSAQLLELRQVFEAAVQFQQLEKLEVGGLRGKLLTDRLREIFAEFKVLFE 544 Query: 149 TVPDRVM 155 + + Sbjct: 545 QWSNVDI 551 >gi|307251327|ref|ZP_07533244.1| hypothetical protein appser4_20840 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856633|gb|EFM88772.1| hypothetical protein appser4_20840 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 153 Score = 38.4 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 48/152 (31%), Gaps = 21/152 (13%) Query: 147 PDTVPDRVMSNIYEHLIRRFGSE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205 + +R + +++ L F F TP V + Sbjct: 9 NQAIKNRELIDVFNQL---FMDGFSDGDKGQFFTPLSVSQFMAN------TQVQHLINQP 59 Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 + + +CG+GG + +++ ++ ++ +++ +C + + + Sbjct: 60 VIKQGEMSCGSGGMIIAFADNLMKYNVDYQTKLLVE--CGDVDLRCVKMCYIQLYLYGI- 116 Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCL 296 + + L+ D + F+Y L Sbjct: 117 -------PARVMHRNELAMDTYEEFTTFNYGL 141 >gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 535 Score = 38.4 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 9/116 (7%) Query: 322 GRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES----- 375 GR G + F+ + KL+ G RA I+ + L + + Sbjct: 176 GRECFACAPTGSGKTLAFVCPMLMKLKHSSKDGIRAVILCPTRELASQTTRECKKMAKGN 235 Query: 376 EIRRWLLENDLIEA--IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 + R L+ +L+ + LP D+ T + L I +K + R + +++ +D Sbjct: 236 KFRIKLMTKELVRTKDLSRLPCDILVSTPLRLQLAI-RKKKVDLSRVEYLVLDESD 290 >gi|237650608|ref|ZP_04524860.1| adenine-specific DNA methylase [Streptococcus pneumoniae CCRI 1974] gi|237821068|ref|ZP_04596913.1| adenine-specific DNA methylase [Streptococcus pneumoniae CCRI 1974M2] Length = 317 Score = 38.4 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%) Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 L + L+ AI L+ S L ++ WL E + A+++LP + Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSNLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263 Query: 397 LFFRTNIATYLWILSNR 413 LF + ++IL + Sbjct: 264 LFANAKQSKTIFILQKK 280 >gi|127436|sp|P10835|MTC3_PBCVC RecName: Full=Modification methylase CviBIII; Short=M.CviBIII; AltName: Full=Adenine-specific methyltransferase CviBIII gi|93691|pir||S01615 site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) CviBIII - Chlorella virus CV-NC1A gi|60639|emb|CAA29835.1| unnamed protein product [Paramecium bursaria Chlorella virus NC1A] Length = 377 Score = 38.