HHsearch alignment for GI: 254780837 and conserved domain: COG0732
>COG0732 HsdS Restriction endonuclease S subunits [Defense mechanisms].
Probab=100.00 E-value=3.1e-37 Score=250.31 Aligned_cols=378 Identities=19% Similarity=0.240 Sum_probs=245.0
Q ss_pred CEEEECCCEEEEEECCCCCCCCCEEEEEEEE-EEEC--CCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 8698841239985066788877536887000-0206--412331122223466553378428978999422875237983
Q gi|254780837|r 25 WKVVPIKRFTKLNTGRTSESGKDIIYIGLED-VESG--TGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLRKAIIA 101 (426)
Q Consensus 25 We~~kL~~i~~i~~g~~~~~~~~~~~~~~~~-i~~~--~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~~g~~~i~ 101 (426)
T Consensus 1 w~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (391)
T COG0732 1 WKELKLGDIGEIIRGKTPSTESPLNYGSDIPILTVKDVKGRYSVKGNNGIIGKKLSYLIAGLGPLGELVRAG-LGDVAYV 79 (391)
T ss_pred CCEEECCCHHHEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCC-CCEEEEE
T ss_conf 957874743514616677745424555676401021235531121013322223110014545421441133-2202441
Q ss_pred CCCEEEECCEEEECCCCCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46489907438714666787022222111778898883156871666526663445554433234577999999999988
Q gi|254780837|r 102 DFDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRI 181 (426)
Q Consensus 102 ~~~~~~~~~~~vl~~~~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPpl~eQ~kIv~~Ld~~~~~I 181 (426)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Ppl~eQ~~I~~iL~~----~ 155 (391)
T COG0732 80 NGKLSINQGCLSLRPKKKEPKSLFLYLLLKLELKLLKSGAGGSTIPNLSKSSLKEIPIPLPPLEEQQAIAKILST----L 155 (391)
T ss_pred CCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHH----H
T ss_conf 355235302688615764378999999976544455520356652223498895178789998999999998766----6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCC--CCCCCCEEEEE
Q ss_conf 8776543332222368899999999860788100023575000686866564330243101345676--44443215774
Q gi|254780837|r 182 DTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKN--TKLIESNILSL 259 (426)
Q Consensus 182 d~~I~~~~~~i~~l~e~kqali~~~~tk~L~p~~~~k~s~~e~lG~IP~~W~~~~l~~~~~~~~~~~--~~~~~~~~~~~ 259 (426)
T Consensus 156 d~~i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (391)
T COG0732 156 DDLIELLEKLIELLEAIKQKLFKELFTKGKYLLNNI--------KSIPEDWKVIKLKDIVEIISGGTKIKPLEKGVNVSY 227 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHC--------CCCCCCCEECCCHHHEEECCCCCCCCCCCCCCCEEE
T ss_conf 677899999888999999999999876332200110--------346656401130033021366754555445555021
Q ss_pred CCCCCCCCCCCCC-----CCEECCCCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEECCCCCC-C-HHH
Q ss_conf 0455324653221-----21000443320242288489974216640379995023566077411143057768-8-688
Q gi|254780837|r 260 SYGNIIQKLETRN-----MGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPHGI-D-STY 332 (426)
Q Consensus 260 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~y 332 (426)
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 305 (391)
T COG0732 228 GKNPVLNGGEPNNGDIVKLSRIDNFIYGLKL--SGGKYITLSSSGATIGIAIINNGTLKFILSQGIGILRIENKVEGEKF 305 (391)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCHHHHHHHC--CCCCEEEECCCCCEEEEEEECCCCCEEEECCCEEEEEECCCCCHHHH
T ss_conf 1344335653467652231145415554430--45752563144424568861466520353275589851553203788
Q ss_pred HHHHHHCHHHHHHHHHHCC-CEEEEECHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999709899999986258-404100288982472148988999999999999999999999999999999999999977
Q gi|254780837|r 333 LAWLMRSYDLCKVFYAMGS-GLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFI 411 (426)
Q Consensus 333 l~~~l~s~~~~~~~~~~~~-g~~~~i~~~~l~~~~i~lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl 411 (426)
T Consensus 306 l~~~l~s~~~~~~~~~~~~gs~~~~l~~~~l~~~~i~iPpl~eQ~~i~~~l~~l~~~i~~~~~~-~~~~~~~~~~~~~~l 384 (391)
T COG0732 306 LYYYLSSEFFKKIIKKVSKGSTIPRLNKKLLEEIPIPIPPLEEQQKIAEILSALDKLIDILNRK-PAELEALKKQLDYLL 384 (391)
T ss_pred HHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_conf 9999726767899998603786553365326431427999999999999999999999985257-778999999999987
Q ss_pred HHHHCCE
Q ss_conf 8862233
Q gi|254780837|r 412 AAAVTGQ 418 (426)
Q Consensus 412 ~~a~tGk 418 (426)
T Consensus 385 ~~l~~~~ 391 (391)
T COG0732 385 NKLLTGK 391 (391)
T ss_pred HHHHCCC
T ss_conf 7755369