HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_1-6_168-211_378-425
>1yf2_A (A:1-6,A:168-211,A:378-425) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}
Probab=99.53 E-value=3.3e-15 Score=112.79 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67870222221117788988831568716665266634455544332345779999999999888776543332222368
Q gi|254780837|r 118 DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKE 197 (426)
Q Consensus 118 ~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e 197 (426)
-.+|+|++|+|.+ +..++...+.|+++++++.+++.+++||+|+++||++||++|+. +|+.|+..++.++.|++
T Consensus 7 ~~d~~yl~~~l~s--~~~~~~~~~~gs~~~~i~~~~l~~~~i~iP~l~eQ~~I~~~L~~----id~~i~~~~~~~~~l~~ 80 (98)
T 1yf2_A 7 LEEQKQIAKILTK--IDEGIEIIEKSINKLERIKKGLMHKLLTKGILEEQKQIAKILSS----VDKSIELKKQKKEKLQR 80 (98)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred CCHHHEEEEEECC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf 2401005201100--13554677777789999999999876641369999999999999----99999999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 899999999860788
Q gi|254780837|r 198 KKQALVSYIVTKGLN 212 (426)
Q Consensus 198 ~kqali~~~~tk~L~ 212 (426)
+++++++++|+++++
T Consensus 81 lk~~ll~~~f~g~~r 95 (98)
T 1yf2_A 81 MKKKIMELLLTGKVR 95 (98)
T ss_dssp HHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999998473058