HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_1-6_168-211_378-425

>1yf2_A (A:1-6,A:168-211,A:378-425) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}
Probab=99.53  E-value=3.3e-15  Score=112.79  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             67870222221117788988831568716665266634455544332345779999999999888776543332222368
Q gi|254780837|r  118 DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKE  197 (426)
Q Consensus       118 ~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e  197 (426)
                      -.+|+|++|+|.+  +..++...+.|+++++++.+++.+++||+|+++||++||++|+.    +|+.|+..++.++.|++
T Consensus         7 ~~d~~yl~~~l~s--~~~~~~~~~~gs~~~~i~~~~l~~~~i~iP~l~eQ~~I~~~L~~----id~~i~~~~~~~~~l~~   80 (98)
T 1yf2_A            7 LEEQKQIAKILTK--IDEGIEIIEKSINKLERIKKGLMHKLLTKGILEEQKQIAKILSS----VDKSIELKKQKKEKLQR   80 (98)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEEEECC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf             2401005201100--13554677777789999999999876641369999999999999----99999999999999999


Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             899999999860788
Q gi|254780837|r  198 KKQALVSYIVTKGLN  212 (426)
Q Consensus       198 ~kqali~~~~tk~L~  212 (426)
                      +++++++++|+++++
T Consensus        81 lk~~ll~~~f~g~~r   95 (98)
T 1yf2_A           81 MKKKIMELLLTGKVR   95 (98)
T ss_dssp             HHHHHHHHHTTTSCE
T ss_pred             HHHHHHHHHHCCCEE
T ss_conf             999999998473058