HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_212-234_372-377

>1yf2_A (A:212-234,A:372-377) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}

Probab=91.98  E-value=0.053  Score=30.52  Aligned_cols=22  Identities=45%  Similarity=0.981  Sum_probs=16.3

Q ss_pred             HHCCCCCCCCCCCCCCCEEEECCCE
Q ss_conf             2325899623706898869884123
Q gi|254780837|r    9 QYKDSGVQWIGAIPKHWKVVPIKRF   33 (426)
Q Consensus         9 ~~k~s~~~w~g~iP~~We~~kL~~i   33 (426)
                      .||.|+   ||+||++|++-.++.|
T Consensus         4 rfkkse---igeipedwevfeikki   25 (29)
T 1yf2_A            4 RFKKSE---IGEIPEDWEVFEIKKI   25 (29)
T ss_dssp             CEECCT---TSSEETTCEEEEHHEE
T ss_pred             CCCCCC---CCCCCCCCEEEEHHEE
T ss_conf             333432---4778876558673388