HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_28-145
>1yf2_A (A:28-145) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}
Probab=98.94 E-value=2.2e-09 Score=76.50 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=75.9
Q ss_pred EEEEEECCCCCC-------CCCEEEEEEEEEEECCCEEEECCCCCCC--CCCCCEEEECCCCEEEEEECCCCCEEEEECC
Q ss_conf 399850667888-------7753688700002064123311222234--6655337842897899942287523798346
Q gi|254780837|r 33 FTKLNTGRTSES-------GKDIIYIGLEDVESGTGKYLPKDGNSRQ--SDTSTVSIFAKGQILYGKLGPYLRKAIIADF 103 (426)
Q Consensus 33 i~~i~~g~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~gDil~s~~g~~~g~~~i~~~ 103 (426)
.+++.+|.+|++ +.+++++++.++..+............. .+..+.+.+++||||++++|+.|. +++.+.
T Consensus 2 ~~~i~~G~~~~~~~~~~~~~~g~p~i~~~di~~~~~~~~~~~~~i~~~~~~~~~~~~l~~gDIli~~~GtiG~-~~i~~~ 80 (118)
T 1yf2_A 2 CKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGE-TAINKI 80 (118)
T ss_dssp EEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTSSCCCBCTTCEEEECSSSTTC-EEEESS
T ss_pred HEEECCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCEECCCEEEECHHHHHHHCCEECCCCCEEEEEECCCCC-CCCCCC
T ss_conf 3510578788876220117897489985212368716447608976778512033741699489996347886-421232
Q ss_pred CEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHC
Q ss_conf 48990743871466--67870222221117788988831
Q gi|254780837|r 104 DGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAI 140 (426)
Q Consensus 104 ~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~ 140 (426)
+++++++++.++++ .+++.||+|||.|. +.++...
T Consensus 81 ~~~~~~~~~~i~~~~~~i~~~yL~~~l~s~--~~~i~~~ 117 (118)
T 1yf2_A 81 EVATNQAILGIIPKDNILESEFLYYILAKN--KNYYSKL 117 (118)
T ss_dssp CBEECSSEEEEEECTTTCCHHHHHHHHHHT--HHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCH--HHHHHHH
T ss_conf 110011111223332201478876654010--5788874