HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_28-145

>1yf2_A (A:28-145) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}
Probab=98.94  E-value=2.2e-09  Score=76.50  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=75.9

Q ss_pred             EEEEEECCCCCC-------CCCEEEEEEEEEEECCCEEEECCCCCCC--CCCCCEEEECCCCEEEEEECCCCCEEEEECC
Q ss_conf             399850667888-------7753688700002064123311222234--6655337842897899942287523798346
Q gi|254780837|r   33 FTKLNTGRTSES-------GKDIIYIGLEDVESGTGKYLPKDGNSRQ--SDTSTVSIFAKGQILYGKLGPYLRKAIIADF  103 (426)
Q Consensus        33 i~~i~~g~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~gDil~s~~g~~~g~~~i~~~  103 (426)
                      .+++.+|.+|++       +.+++++++.++..+.............  .+..+.+.+++||||++++|+.|. +++.+.
T Consensus         2 ~~~i~~G~~~~~~~~~~~~~~g~p~i~~~di~~~~~~~~~~~~~i~~~~~~~~~~~~l~~gDIli~~~GtiG~-~~i~~~   80 (118)
T 1yf2_A            2 CKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGE-TAINKI   80 (118)
T ss_dssp             EEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTSSCCCBCTTCEEEECSSSTTC-EEEESS
T ss_pred             HEEECCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCEECCCEEEECHHHHHHHCCEECCCCCEEEEEECCCCC-CCCCCC
T ss_conf             3510578788876220117897489985212368716447608976778512033741699489996347886-421232


Q ss_pred             CEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHC
Q ss_conf             48990743871466--67870222221117788988831
Q gi|254780837|r  104 DGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAI  140 (426)
Q Consensus       104 ~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~  140 (426)
                      +++++++++.++++  .+++.||+|||.|.  +.++...
T Consensus        81 ~~~~~~~~~~i~~~~~~i~~~yL~~~l~s~--~~~i~~~  117 (118)
T 1yf2_A           81 EVATNQAILGIIPKDNILESEFLYYILAKN--KNYYSKL  117 (118)
T ss_dssp             CBEECSSEEEEEECTTTCCHHHHHHHHHHT--HHHHHCC
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHCCH--HHHHHHH
T ss_conf             110011111223332201478876654010--5788874