HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_28-145
>1yf2_A (A:28-145) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}
Probab=98.07 E-value=5.9e-06 Score=55.14 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=64.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCC-CC-CEE-CC--CCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEEC
Q ss_conf 44443215774045532465322-12-100-04--433202422884899742166403799950235660774111430
Q gi|254780837|r 249 TKLIESNILSLSYGNIIQKLETR-NM-GLK-PE--SYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAV 323 (426)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~--~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (426)
..+.++++|+++..++....... .. .+. .. .......+++||+|++..|+.+..+ ....+++++++++.+
T Consensus 17 ~~~~~~g~p~i~~~di~~~~~~~~~~~~~i~~~~~~~~~~~~l~~gDIli~~~GtiG~~~-----i~~~~~~~~~~~~~i 91 (118)
T 1yf2_A 17 EYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETA-----INKIEVATNQAILGI 91 (118)
T ss_dssp GGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTSSCCCBCTTCEEEECSSSTTCEE-----EESSCBEECSSEEEE
T ss_pred HCCCCCCEEEEEECCCCCCCCEECCCEEEECHHHHHHHCCEECCCCCEEEEEECCCCCCC-----CCCCCCCCCCCCCCC
T ss_conf 011789748998521236871644760897677851203374169948999634788642-----123211001111122
Q ss_pred CCC--CCCHHHHHHHHHCHHH
Q ss_conf 577--6886889999709899
Q gi|254780837|r 324 KPH--GIDSTYLAWLMRSYDL 342 (426)
Q Consensus 324 ~~~--~~~~~yl~~~l~s~~~ 342 (426)
+++ .+++.||+|+|+|...
T Consensus 92 ~~~~~~i~~~yL~~~l~s~~~ 112 (118)
T 1yf2_A 92 IPKDNILESEFLYYILAKNKN 112 (118)
T ss_dssp EECTTTCCHHHHHHHHHHTHH
T ss_pred CCCCCCCCHHHHHHHHCCHHH
T ss_conf 333220147887665401057