HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_28-145

>1yf2_A (A:28-145) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}
Probab=98.07  E-value=5.9e-06  Score=55.14  Aligned_cols=89  Identities=12%  Similarity=0.098  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCC-CC-CEE-CC--CCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEEC
Q ss_conf             44443215774045532465322-12-100-04--433202422884899742166403799950235660774111430
Q gi|254780837|r  249 TKLIESNILSLSYGNIIQKLETR-NM-GLK-PE--SYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAV  323 (426)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~--~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
                      ..+.++++|+++..++....... .. .+. ..  .......+++||+|++..|+.+..+     ....+++++++++.+
T Consensus        17 ~~~~~~g~p~i~~~di~~~~~~~~~~~~~i~~~~~~~~~~~~l~~gDIli~~~GtiG~~~-----i~~~~~~~~~~~~~i   91 (118)
T 1yf2_A           17 EYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETA-----INKIEVATNQAILGI   91 (118)
T ss_dssp             GGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTSSCCCBCTTCEEEECSSSTTCEE-----EESSCBEECSSEEEE
T ss_pred             HCCCCCCEEEEEECCCCCCCCEECCCEEEECHHHHHHHCCEECCCCCEEEEEECCCCCCC-----CCCCCCCCCCCCCCC
T ss_conf             011789748998521236871644760897677851203374169948999634788642-----123211001111122


Q ss_pred             CCC--CCCHHHHHHHHHCHHH
Q ss_conf             577--6886889999709899
Q gi|254780837|r  324 KPH--GIDSTYLAWLMRSYDL  342 (426)
Q Consensus       324 ~~~--~~~~~yl~~~l~s~~~  342 (426)
                      +++  .+++.||+|+|+|...
T Consensus        92 ~~~~~~i~~~yL~~~l~s~~~  112 (118)
T 1yf2_A           92 IPKDNILESEFLYYILAKNKN  112 (118)
T ss_dssp             EECTTTCCHHHHHHHHHHTHH
T ss_pred             CCCCCCCCHHHHHHHHCCHHH
T ss_conf             333220147887665401057