HHsearch results for GI: 254780837 and protein with PDBid: 1ydx_A
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=99.91 E-value=1.5e-24 Score=169.98 Aligned_cols=175 Identities=13% Similarity=0.149 Sum_probs=114.0
Q ss_pred CCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCCE
Q ss_conf 37068988698841239985066788877536887000020641233112222346655337842897899942287523
Q gi|254780837|r 18 IGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLRK 97 (426)
Q Consensus 18 ~g~iP~~We~~kL~~i~~i~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~~g~ 97 (426)
++.+|++|++++|+++|++.+|.++...... ..+..++... ..........+.++.+|+++++.|+..|.
T Consensus 217 ~~~~~~~w~~~~l~~i~~~~~g~~~~~~~~~--------~~G~~p~~~~--~~~~~~~~~~~~~~~~~i~i~~~g~~~G~ 286 (406)
T 1ydx_A 217 LEALQSQMHEITLGEIFNFKSGKYLKSEERL--------EEGKFPYYGA--GIDNTGFVAEPNTEKDTISIISNGYSLGN 286 (406)
T ss_dssp CTHHHHHCEEEEGGGTEEEEECCCCCGGGCB--------SSCSEEEESS--SSSCSSEESSCSBCSSEEEEECSSTTTTC
T ss_pred CCCCCCCCEEEECCCEEECCCCCCCCHHHHC--------CCCCEEEEEE--CCCCCCEEEEECCCCCCCEEEECCCCEEE
T ss_conf 5678755345331001112478866626632--------5784479973--13567347750235776169714873058
Q ss_pred EEEECCCEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 79834648990743871466--6787022222111778898883156871666526663445554-43323457799999
Q gi|254780837|r 98 AIIADFDGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMP-IPPLAEQVLIREKI 174 (426)
Q Consensus 98 ~~i~~~~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~ip-lPpl~eQ~kIv~~L 174 (426)
+.+.+.+++++++++++++. ++++.|++|+|.+ +...+...++|+++++|+.++|.+++|| +||++||++|+++|
T Consensus 287 v~~~~~~~~~~~~~~~i~~~~~~i~~~fl~~~l~~--~~~~~~~~~~gs~~~~i~~~~l~~~~ip~iP~~~eQ~~I~~~l 364 (406)
T 1ydx_A 287 IRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKY--LQKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAGKIV 364 (406)
T ss_dssp EEEESSCBEECTTEEEEEESSTTCCHHHHHHHHHH--HHHHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHHHHHHH
T ss_pred EEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCEECHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99851332445659999842554688999999999--9999998645576430878996196717797999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988877654333222236889999999986
Q gi|254780837|r 175 IAETVRIDTLITERIRFIELLKEKKQALVSYIVT 208 (426)
Q Consensus 175 d~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~t 208 (426)
+ .+|+.|...++.++.|+++|+++|+++|+
T Consensus 365 ~----~i~~~i~~~~~~l~~l~~lr~~LL~klF~ 394 (406)
T 1ydx_A 365 F----LLDQKLDQYKKELSSLTVIRDTLLKKLFP 394 (406)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9----99999999999999999999999997648