HHsearch results for GI: 254780837 and protein with PDBid: 1yf2_A
>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} SCOP: d.287.1.2 d.287.1.2
Probab=100.00 E-value=0 Score=418.06 Aligned_cols=395 Identities=17% Similarity=0.264 Sum_probs=290.2
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCEEEECCCEEEEEE-CCCCCC-------CCCEEEEEEEEEEECCCEEEECCCCC--CCC
Q ss_conf 77880232589962370689886988412399850-667888-------77536887000020641233112222--346
Q gi|254780837|r 4 YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNT-GRTSES-------GKDIIYIGLEDVESGTGKYLPKDGNS--RQS 73 (426)
Q Consensus 4 ~~~~~~~k~s~~~w~g~iP~~We~~kL~~i~~i~~-g~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ 73 (426)
|-+|++||+|+ +|+||+||+++|||+||++.+ |.+|.. +.++++++..++.++........... ...
T Consensus 2 ~~~~~~~~~~~---~~elP~~W~~~kLgdi~~~i~~g~~p~~~~~~~~~~g~ip~i~~~~i~~~~~~~~~~~~~i~~~~~ 78 (425)
T 1yf2_A 2 FYKEENFKKTE---IGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGL 78 (425)
T ss_dssp EECCCCCBCCS---SSSCBSSCCCEEHHHHEEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHH
T ss_pred CCCCCCCCCCC---CCCCCCCCEEEEHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEECHHHH
T ss_conf 88756757798---984798675999479425525787778752101178975899850013687064476089768785
Q ss_pred CCCCEEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECH
Q ss_conf 65533784289789994228752379834648990743871466--6787022222111778898883156871666526
Q gi|254780837|r 74 DTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAICEGATMSHADW 151 (426)
Q Consensus 74 ~~~~~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~ 151 (426)
.....+.+++||||++++|++ |.+++.+.+++++.+++.++++ ...+.|++|++.+. ..++...++|+++++|+.
T Consensus 79 ~~~~~~~~~~gdili~~~g~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~s~--~~~~~~~~~g~~~~~i~~ 155 (425)
T 1yf2_A 79 NNSNAWIVPKNSVLFAMYGSI-GETAINKIEVATNQAILGIIPKDNILESEFLYYILAKN--KNYYSKLGMQTTQKNLNA 155 (425)
T ss_dssp HTSSCCCBCTTCEEEECSSST-TCEEEESSCBEECSSEEEEEECTTTCCHHHHHHHHHHT--HHHHHCCSSSSSCCCCCH
T ss_pred HHCCCEEECCCCEEEEEECCC-CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCCCCH
T ss_conf 120317606994899964588-83001134440025159999562115689999998767--888875245775440728
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 66344555443323457799999999998887765433322223688999999998607881000235750006868665
Q gi|254780837|r 152 KGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDH 231 (426)
Q Consensus 152 ~~l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L~p~~~~k~s~~e~lG~IP~~ 231 (426)
++|.++.||+||++||++||++|+. +|++|+.++++++.++++++++++++|+++.++....++ .+|++|++
T Consensus 156 ~~l~~~~iplP~l~eQ~~I~~~l~~----~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~p~~ 227 (425)
T 1yf2_A 156 QIVKSFKIPLPPLEEQKQIAKILTK----IDEGIEIIEKSINKLERIKKGLMHKLLTKGIGHSRFKKS----EIGEIPED 227 (425)
T ss_dssp HHHHTCEECCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCEECC----TTSSEETT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCC
T ss_conf 8882510578887999999998766----767777789899999999999999766423575322322----02579876
Q ss_pred CCCCCHHHHCCCCCCCCC-----CC-CCCEEEEECCCCCCCCCCC----CCCCEE---CCCCCCCEEECCCCEEEEEECC
Q ss_conf 643302431013456764-----44-4321577404553246532----212100---0443320242288489974216
Q gi|254780837|r 232 WEVKPFFALVTELNRKNT-----KL-IESNILSLSYGNIIQKLET----RNMGLK---PESYETYQIVDPGEIVFRFIDL 298 (426)
Q Consensus 232 W~~~~l~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~gdil~~~~~~ 298 (426)
|++++|++++....+... ++ ..+.++.+...++...... ...... ......+..+..||++++..+.
T Consensus 228 w~~~~l~~i~~~~~g~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~ 307 (425)
T 1yf2_A 228 WEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSIIISTRAP 307 (425)
T ss_dssp CEEEEHHHHEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCEEEECSSS
T ss_pred CEEEEHHHEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEECCCCCEEECHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf 44778225699967998875665434678602573133345577504157633412444122332102589889985301
Q ss_pred CCCEEEEEEECCCCCEEEECH-H-EEC-CCCCCCHHHHHHHHHCHHHHHHHHHH-CCCEEEEECHHHHHCCEECCCCHHH
Q ss_conf 640379995023566077411-1-430-57768868899997098999999862-5840410028898247214898899
Q gi|254780837|r 299 QNDKRSLRSAQVMERGIITSA-Y-MAV-KPHGIDSTYLAWLMRSYDLCKVFYAM-GSGLRQSLKFEDVKRLPVLVPPIKE 374 (426)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~yl~~~l~s~~~~~~~~~~-~~g~~~~i~~~~l~~~~i~lP~lee 374 (426)
.+..+.+. ..+..+.+ . +.. ..+.+++.|++|+|++. +.++... .++++++|+.++|.+++||+||++|
T Consensus 308 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~--~~~~~~~~~gs~~~~i~~~~l~~~~ipiP~~~e 380 (425)
T 1yf2_A 308 VGYVAVLT-----VESTFNQGCKGLFQKNNDSVNTEFYAYYLKFK--KNLLENLSGGSTFKELSKSMLENFKIPLPPLEE 380 (425)
T ss_dssp TTCEEEES-----SCBEECTTEEEEEESCTTSCCHHHHHHHHHHT--HHHHHHHHCSSSSCCCCHHHHHHCEEEECCHHH
T ss_pred CCCEEEEE-----CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH--HHHHHHHCCEECCCEECHHHHCCCEEECCCHHH
T ss_conf 35314531-----13321100134442046644789999999999--999998667013216988994673882879999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCC
Q ss_conf 9999999999999999999999999999999999977886223361487
Q gi|254780837|r 375 QFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDLRG 423 (426)
Q Consensus 375 Q~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~tGki~V~~ 423 (426)
|++|++.++. ++++++..+++++.|+++|++||++|||||+|||-
T Consensus 381 Q~~I~~~l~~----~~~~i~~~~~~~~~l~~lk~~LL~~~~tGel~v~~ 425 (425)
T 1yf2_A 381 QKQIAKILSS----VDKSIELKKQKKEKLQRMKKKIMELLLTGKVRVKT 425 (425)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEECC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 9999999999----99999999999999999999999998484068509