HHsearch results for GI: 254780837 and protein with PDBid: 1yf2_A
>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} SCOP: d.287.1.2 d.287.1.2
Probab=99.94 E-value=5.8e-27 Score=185.02 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=58.2
Q ss_pred CEEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEE-ECC-C-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 3378428978999422875237983464899074387-146-6-678702222211177889888315687166652666
Q gi|254780837|r 77 TVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLV-LQP-K-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKG 153 (426)
Q Consensus 77 ~~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~v-l~~-~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~ 153 (426)
....+..|||++++.|+.++.+.+. .+..+..+... +++ + .+.+.||+|+|++ ++.++...++|+++++|+.++
T Consensus 291 ~~~~~~~gdil~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~--~~~~~~~~~~gs~~~~i~~~~ 367 (425)
T 1yf2_A 291 NLNLIPKGSIIISTRAPVGYVAVLT-VESTFNQGCKGLFQKNNDSVNTEFYAYYLKF--KKNLLENLSGGSTFKELSKSM 367 (425)
T ss_dssp TCCCBCTTCEEEECSSSTTCEEEES-SCBEECTTEEEEEESCTTSCCHHHHHHHHHH--THHHHHHHHCSSSSCCCCHHH
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEE-CCCCCCEEEEEEEECCCCCCCHHHHHHHHHH--HHHHHHHHCCEECCCEECHHH
T ss_conf 3210258988998530135314531-1332110013444204664478999999999--999999866701321698899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3445554433234577999999999988877654333222236889999999986078
Q gi|254780837|r 154 IGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGL 211 (426)
Q Consensus 154 l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L 211 (426)
|.+++||+||++||++||++|+. +|++++..++.++.|+++|+++|++|||+++
T Consensus 368 l~~~~ipiP~~~eQ~~I~~~l~~----~~~~i~~~~~~~~~l~~lk~~LL~~~~tGel 421 (425)
T 1yf2_A 368 LENFKIPLPPLEEQKQIAKILSS----VDKSIELKKQKKEKLQRMKKKIMELLLTGKV 421 (425)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HCCCEEECCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 46738828799999999999999----9999999999999999999999999848406