HHsearch results for GI: 254780837 and protein with PDBid: 1yf2_A

>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} SCOP: d.287.1.2 d.287.1.2
Probab=99.94  E-value=5.8e-27  Score=185.02  Aligned_cols=128  Identities=20%  Similarity=0.305  Sum_probs=58.2

Q ss_pred             CEEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEE-ECC-C-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHH
Q ss_conf             3378428978999422875237983464899074387-146-6-678702222211177889888315687166652666
Q gi|254780837|r   77 TVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLV-LQP-K-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKG  153 (426)
Q Consensus        77 ~~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~v-l~~-~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~  153 (426)
                      ....+..|||++++.|+.++.+.+. .+..+..+... +++ + .+.+.||+|+|++  ++.++...++|+++++|+.++
T Consensus       291 ~~~~~~~gdil~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~--~~~~~~~~~~gs~~~~i~~~~  367 (425)
T 1yf2_A          291 NLNLIPKGSIIISTRAPVGYVAVLT-VESTFNQGCKGLFQKNNDSVNTEFYAYYLKF--KKNLLENLSGGSTFKELSKSM  367 (425)
T ss_dssp             TCCCBCTTCEEEECSSSTTCEEEES-SCBEECTTEEEEEESCTTSCCHHHHHHHHHH--THHHHHHHHCSSSSCCCCHHH
T ss_pred             CCCCCCCCCEEEEEECCCCCEEEEE-CCCCCCEEEEEEEECCCCCCCHHHHHHHHHH--HHHHHHHHCCEECCCEECHHH
T ss_conf             3210258988998530135314531-1332110013444204664478999999999--999999866701321698899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3445554433234577999999999988877654333222236889999999986078
Q gi|254780837|r  154 IGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGL  211 (426)
Q Consensus       154 l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L  211 (426)
                      |.+++||+||++||++||++|+.    +|++++..++.++.|+++|+++|++|||+++
T Consensus       368 l~~~~ipiP~~~eQ~~I~~~l~~----~~~~i~~~~~~~~~l~~lk~~LL~~~~tGel  421 (425)
T 1yf2_A          368 LENFKIPLPPLEEQKQIAKILSS----VDKSIELKKQKKEKLQRMKKKIMELLLTGKV  421 (425)
T ss_dssp             HHHCEEEECCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             HCCCEEECCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf             46738828799999999999999----9999999999999999999999999848406