HHSEARCH alignment of GI: 254780837 and SCOP domain: d1yf2a1

Alignment
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=99.95  E-value=9.3e-28  Score=188.49  Aligned_cols=196  Identities=16%  Similarity=0.303  Sum_probs=140.0

Q ss_pred             CCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCC------CC-CCCCEEEEECCCCCCCCCCCCCC---CEEC--CCCC
Q ss_conf             00023575000686866564330243101345676------44-44321577404553246532212---1000--4433
Q gi|254780837|r  214 DVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKN------TK-LIESNILSLSYGNIIQKLETRNM---GLKP--ESYE  281 (426)
Q Consensus       214 ~~~~k~s~~e~lG~IP~~W~~~~l~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~  281 (426)
                      ...||||+   ||+||++|++++|++++....++.      .. +.++++++++.+++.........   ....  ....
T Consensus         5 ~~~~~~se---lg~iP~~W~~~~L~~i~~~i~~g~~p~~~~~~~~~~~~~p~i~~~~i~~~~~~~~~~~~~~~~~~~~~~   81 (220)
T d1yf2a1           5 EENFKKTE---IGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNS   81 (220)
T ss_dssp             CCCCBCCS---SSSCBSSCCCEEHHHHEEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTS
T ss_pred             CCCCCCCC---CCCCCCCCEEEEHHHHHEEECCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHH
T ss_conf             67768897---886899888999489544005885899850431268988999812215532114775166514443210


Q ss_pred             CCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEECCCC-C-CCHHHHHHHHHCHHHHHHHHH-HCCCEEEEEC
Q ss_conf             202422884899742166403799950235660774111430577-6-886889999709899999986-2584041002
Q gi|254780837|r  282 TYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPH-G-IDSTYLAWLMRSYDLCKVFYA-MGSGLRQSLK  358 (426)
Q Consensus       282 ~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~yl~~~l~s~~~~~~~~~-~~~g~~~~i~  358 (426)
                      ....++.||++++..++.+.. ++.    ...+++++++..+++. . +++.|+|+++.+..+  .... ..++++++|+
T Consensus        82 ~~~~~~~gdil~~~~~~~g~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~g~~~~~i~  154 (220)
T d1yf2a1          82 NAWIVPKNSVLFAMYGSIGET-AIN----KIEVATNQAILGIIPKDNILESEFLYYILAKNKN--YYSKLGMQTTQKNLN  154 (220)
T ss_dssp             SCCCBCTTCEEEECSSSTTCE-EEE----SSCBEECSSEEEEEECTTTCCHHHHHHHHHHTHH--HHHCCSSSSSCCCCC
T ss_pred             HEEEECCCCCCCHHHCCCHHH-HHH----CCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHH--HHHHHCCCCCCCCCC
T ss_conf             005504433310110100122-220----2331021313798326432125666666401357--888752455512145


Q ss_pred             HHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CEEECCC
Q ss_conf             8898247214898899999999999999999999999999999999999997788622---3361487
Q gi|254780837|r  359 FEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVT---GQIDLRG  423 (426)
Q Consensus       359 ~~~l~~~~i~lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~t---Gki~V~~  423 (426)
                      .+++++++||+||++||++|+++|+    .++.+++..+++++.|+++|++||++|||   |++||++
T Consensus       155 ~~~l~~~~i~iPp~~eQ~~I~~~l~----~i~~~i~~~~~~i~~L~~~r~~ll~~l~tg~l~~~r~~~  218 (220)
T d1yf2a1         155 AQIVKSFKIPLPPLEEQKQIAKILT----KIDEGIEIIEKSINKLERIKKGLMHKLLTKGIGHSRFKK  218 (220)
T ss_dssp             HHHHHTCEECCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCEEC
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             6554324652245899999999999----999999999999999999999999998579999810899


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA methylase specificity domain
superfamily: DNA methylase specificity domain
family: Type I restriction modification DNA specificity domain
domain: Bipartite methylase S protein MJ0130
species: Methanocaldococcus jannaschii [TaxId: 2190]