Query gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 426 No_of_seqs 161 out of 3207 Neff 9.1 Searched_HMMs 13730 Date Wed Jun 1 10:30:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780837.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1yf2a1 d.287.1.2 (A:1-220) Bi 100.0 3.2E-33 2.4E-37 222.5 12.7 207 4-220 2-219 (220) 2 d1yf2a2 d.287.1.2 (A:221-425) 100.0 1.3E-29 9.5E-34 200.0 11.5 187 18-211 1-201 (205) 3 d1yf2a1 d.287.1.2 (A:1-220) Bi 100.0 9.3E-28 6.7E-32 188.5 14.7 196 214-423 5-218 (220) 4 d1yf2a2 d.287.1.2 (A:221-425) 99.9 7.3E-27 5.3E-31 182.9 13.1 187 225-422 1-204 (205) 5 d1ydxa2 d.287.1.2 (A:194-374) 99.9 6E-26 4.3E-30 177.2 9.0 169 18-207 1-177 (181) 6 d1ydxa1 d.287.1.2 (A:1-193) Bi 99.9 2.7E-24 2E-28 166.9 13.0 168 20-209 8-184 (193) 7 d1ydxa1 d.287.1.2 (A:1-193) Bi 99.8 2.2E-19 1.6E-23 136.3 15.6 170 227-419 8-186 (193) 8 d1ydxa2 d.287.1.2 (A:194-374) 99.8 1.7E-19 1.2E-23 137.1 14.4 167 228-416 4-178 (181) 9 d2ih2a2 d.287.1.1 (A:244-413) 54.8 4.6 0.00034 16.0 4.9 49 320-368 113-163 (170) 10 d1tk7a1 b.72.1.1 (A:1-45) Supp 46.8 3.8 0.00027 16.6 1.5 11 18-28 10-20 (45) 11 d1i5hw_ b.72.1.1 (W:) Ubiquiti 36.5 7.4 0.00054 14.7 1.7 13 17-29 8-20 (50) 12 d2jmfa1 b.72.1.1 (A:521-553) U 35.4 6.6 0.00048 15.1 1.3 11 19-29 1-11 (33) 13 d1y71a1 b.34.16.1 (A:4-127) Ki 27.8 13 0.00091 13.3 1.8 53 353-408 66-120 (124) 14 d1zkea1 a.30.6.1 (A:1-79) Hypo 25.0 14 0.001 13.0 3.1 18 393-410 59-76 (79) No 1 >d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]} Probab=100.00 E-value=3.2e-33 Score=222.45 Aligned_cols=207 Identities=22% Similarity=0.361 Sum_probs=160.4 Q ss_pred CCCCHHHCCCCCCCCCCCCCCCEEEECCCEEEEE-ECCCCCCC-------CCEEEEEEEEEEECCCEEEECCCCC--CCC Q ss_conf 7788023258996237068988698841239985-06678887-------7536887000020641233112222--346 Q gi|254780837|r 4 YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLN-TGRTSESG-------KDIIYIGLEDVESGTGKYLPKDGNS--RQS 73 (426) Q Consensus 4 ~~~~~~~k~s~~~w~g~iP~~We~~kL~~i~~i~-~g~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ 73 (426) |.++.+||+|+ ||+||++|++++|+++|+.. .|.+|+.. .+++++++.++..+.+......... ... T Consensus 2 ~~~~~~~~~se---lg~iP~~W~~~~L~~i~~~i~~g~~p~~~~~~~~~~~~~p~i~~~~i~~~~~~~~~~~~~~~~~~~ 78 (220) T d1yf2a1 2 FYKEENFKKTE---IGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGL 78 (220) T ss_dssp EECCCCCBCCS---SSSCBSSCCCEEHHHHEEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHH T ss_pred CCCCCCCCCCC---CCCCCCCCEEEEHHHHHEEECCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHH T ss_conf 87767768897---886899888999489544005885899850431268988999812215532114775166514443 Q ss_pred CCCCEEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEEECCCC-CCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHH Q ss_conf 655337842897899942287523798346489907438714666-7870222221117788988831568716665266 Q gi|254780837|r 74 DTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKD-VLPELLQGWLLSIDVTQRIEAICEGATMSHADWK 152 (426) Q Consensus 74 ~~~~~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~vl~~~~-~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~ 152 (426) .....+.++.||||++++|+. |.+++.+.+++++.+++++++.+ ..+.|++||+.+. ...+....+.|+++++|+.+ T Consensus 79 ~~~~~~~~~~gdil~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~i~~~ 156 (220) T d1yf2a1 79 NNSNAWIVPKNSVLFAMYGSI-GETAINKIEVATNQAILGIIPKDNILESEFLYYILAK-NKNYYSKLGMQTTQKNLNAQ 156 (220) T ss_dssp HTSSCCCBCTTCEEEECSSST-TCEEEESSCBEECSSEEEEEECTTTCCHHHHHHHHHH-THHHHHCCSSSSSCCCCCHH T ss_pred HHHHEEEECCCCCCCHHHCCC-HHHHHHCCCCEECCCEEEEECCCCCCHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCHH T ss_conf 210005504433310110100-1222202331021313798326432125666666401-35788875245551214565 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 63445554433234577999999999988877654333222236889999999986078810002357 Q gi|254780837|r 153 GIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDS 220 (426) Q Consensus 153 ~l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L~p~~~~k~s 220 (426) +|+++.||+||++||++||++|+ .+|++++.+++.++.|+++|+++++++||++|+ ..+++++ T Consensus 157 ~l~~~~i~iPp~~eQ~~I~~~l~----~i~~~i~~~~~~i~~L~~~r~~ll~~l~tg~l~-~~r~~~~ 219 (220) T d1yf2a1 157 IVKSFKIPLPPLEEQKQIAKILT----KIDEGIEIIEKSINKLERIKKGLMHKLLTKGIG-HSRFKKS 219 (220) T ss_dssp HHHTCEECCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-CCCEECC T ss_pred HHHCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCC T ss_conf 54324652245899999999999----999999999999999999999999998579999-8108999 No 2 >d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]} Probab=99.96 E-value=1.3e-29 Score=200.01 Aligned_cols=187 Identities=22% Similarity=0.325 Sum_probs=111.0 Q ss_pred CCCCCCCCEEEECCCEEEEEECCCCCCCC-------CEEEEEEEEEEECCCEE-EECCC---CCCCCCCCCEEEECCCCE Q ss_conf 37068988698841239985066788877-------53688700002064123-31122---223466553378428978 Q gi|254780837|r 18 IGAIPKHWKVVPIKRFTKLNTGRTSESGK-------DIIYIGLEDVESGTGKY-LPKDG---NSRQSDTSTVSIFAKGQI 86 (426) Q Consensus 18 ~g~iP~~We~~kL~~i~~i~~g~~~~~~~-------~~~~~~~~~i~~~~~~~-~~~~~---~~~~~~~~~~~~~~~gDi 86 (426) ||+||++|++++|+++|++.+|.+++..+ +++++++.++....... ..... ..........+.+..||+ T Consensus 1 lG~iP~~W~~~~L~di~~~~~G~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 80 (205) T d1yf2a2 1 IGEIPEDWEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSI 80 (205) T ss_dssp TSSEETTCEEEEHHHHEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCE T ss_pred CCCCCCCCEEEEHHHEEEEECCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEEHHCCCCCEECCCCCE T ss_conf 97719797899925769995888899775101257963589851246656313604652343210102444222144436 Q ss_pred EEEEECCCCCEEEEECCCEEEECCEEEECC--C-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHH Q ss_conf 999422875237983464899074387146--6-6787022222111778898883156871666526663445554433 Q gi|254780837|r 87 LYGKLGPYLRKAIIADFDGICSTQFLVLQP--K-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPP 163 (426) Q Consensus 87 l~s~~g~~~g~~~i~~~~~~~~~~~~vl~~--~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPp 163 (426) +++..|+.| .+.+...+..+.....+++. + ...+.|++|++ ..++.++...++|+++++|+.++++++.||+|| T Consensus 81 ~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~i~~~~l~~~~i~lP~ 157 (205) T d1yf2a2 81 IISTRAPVG-YVAVLTVESTFNQGCKGLFQKNNDSVNTEFYAYYL--KFKKNLLENLSGGSTFKELSKSMLENFKIPLPP 157 (205) T ss_dssp EEECSSSTT-CEEEESSCBEECTTEEEEEESCTTSCCHHHHHHHH--HHTHHHHHHHHCSSSSCCCCHHHHHHCEEEECC T ss_pred EEEECCCEE-EEEEECCCCCEEECHHEECCCCCCCCCHHHHHHHH--HHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC T ss_conf 653035237-89996156505200010102442344699999988--888899987616744344448888518455799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 234577999999999988877654333222236889999999986078 Q gi|254780837|r 164 LAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGL 211 (426) Q Consensus 164 l~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L 211 (426) ++||++||++|+ .+|++|+..+++++.|+++|+++|+++||+++ T Consensus 158 ~~eQ~~I~~~l~----~id~~i~~~~~~~~~l~~~k~~Ll~~l~tGel 201 (205) T d1yf2a2 158 LEEQKQIAKILS----SVDKSIELKKQKKEKLQRMKKKIMELLLTGKV 201 (205) T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE T ss_conf 999999999999----99999999999999999999999999837844 No 3 >d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]} Probab=99.95 E-value=9.3e-28 Score=188.49 Aligned_cols=196 Identities=16% Similarity=0.303 Sum_probs=140.0 Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCC------CC-CCCCEEEEECCCCCCCCCCCCCC---CEEC--CCCC Q ss_conf 00023575000686866564330243101345676------44-44321577404553246532212---1000--4433 Q gi|254780837|r 214 DVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKN------TK-LIESNILSLSYGNIIQKLETRNM---GLKP--ESYE 281 (426) Q Consensus 214 ~~~~k~s~~e~lG~IP~~W~~~~l~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~ 281 (426) ...||||+ ||+||++|++++|++++....++. .. +.++++++++.+++......... .... .... T Consensus 5 ~~~~~~se---lg~iP~~W~~~~L~~i~~~i~~g~~p~~~~~~~~~~~~~p~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (220) T d1yf2a1 5 EENFKKTE---IGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNS 81 (220) T ss_dssp CCCCBCCS---SSSCBSSCCCEEHHHHEEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTS T ss_pred CCCCCCCC---CCCCCCCCEEEEHHHHHEEECCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHH T ss_conf 67768897---886899888999489544005885899850431268988999812215532114775166514443210 Q ss_pred CCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEECCCC-C-CCHHHHHHHHHCHHHHHHHHH-HCCCEEEEEC Q ss_conf 202422884899742166403799950235660774111430577-6-886889999709899999986-2584041002 Q gi|254780837|r 282 TYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPH-G-IDSTYLAWLMRSYDLCKVFYA-MGSGLRQSLK 358 (426) Q Consensus 282 ~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~yl~~~l~s~~~~~~~~~-~~~g~~~~i~ 358 (426) ....++.||++++..++.+.. ++. ...+++++++..+++. . +++.|+|+++.+..+ .... ..++++++|+ T Consensus 82 ~~~~~~~gdil~~~~~~~g~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~g~~~~~i~ 154 (220) T d1yf2a1 82 NAWIVPKNSVLFAMYGSIGET-AIN----KIEVATNQAILGIIPKDNILESEFLYYILAKNKN--YYSKLGMQTTQKNLN 154 (220) T ss_dssp SCCCBCTTCEEEECSSSTTCE-EEE----SSCBEECSSEEEEEECTTTCCHHHHHHHHHHTHH--HHHCCSSSSSCCCCC T ss_pred HEEEECCCCCCCHHHCCCHHH-HHH----CCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHH--HHHHHCCCCCCCCCC T ss_conf 005504433310110100122-220----2331021313798326432125666666401357--888752455512145 Q ss_pred HHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CEEECCC Q ss_conf 8898247214898899999999999999999999999999999999999997788622---3361487 Q gi|254780837|r 359 FEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVT---GQIDLRG 423 (426) Q Consensus 359 ~~~l~~~~i~lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~t---Gki~V~~ 423 (426) .+++++++||+||++||++|+++|+ .++.+++..+++++.|+++|++||++||| |++||++ T Consensus 155 ~~~l~~~~i~iPp~~eQ~~I~~~l~----~i~~~i~~~~~~i~~L~~~r~~ll~~l~tg~l~~~r~~~ 218 (220) T d1yf2a1 155 AQIVKSFKIPLPPLEEQKQIAKILT----KIDEGIEIIEKSINKLERIKKGLMHKLLTKGIGHSRFKK 218 (220) T ss_dssp HHHHHTCEECCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCEEC T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 6554324652245899999999999----999999999999999999999999998579999810899 No 4 >d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]} Probab=99.94 E-value=7.3e-27 Score=182.90 Aligned_cols=187 Identities=13% Similarity=0.238 Sum_probs=130.8 Q ss_pred CCCCCCCCCCCCHHHHCCCCCCC-----CCC-CCCCEEEEECCCCCCCCCCCC----CCC-EEC--CCCCCCEEECCCCE Q ss_conf 68686656433024310134567-----644-443215774045532465322----121-000--44332024228848 Q gi|254780837|r 225 VGLVPDHWEVKPFFALVTELNRK-----NTK-LIESNILSLSYGNIIQKLETR----NMG-LKP--ESYETYQIVDPGEI 291 (426) Q Consensus 225 lG~IP~~W~~~~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~----~~~-~~~--~~~~~~~~~~~gdi 291 (426) ||+||++|++++|++++...++. ..+ ..++++++++..++....... ... ... ........+..||+ T Consensus 1 lG~iP~~W~~~~L~di~~~~~G~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 80 (205) T d1yf2a2 1 IGEIPEDWEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSI 80 (205) T ss_dssp TSSEETTCEEEEHHHHEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCE T ss_pred CCCCCCCCEEEEHHHEEEEECCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEEHHCCCCCEECCCCCE T ss_conf 97719797899925769995888899775101257963589851246656313604652343210102444222144436 Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEECHHEEC--CC-CCCCHHHHHHHHHCHHHHHHHHHH-CCCEEEEECHHHHHCCEE Q ss_conf 99742166403799950235660774111430--57-768868899997098999999862-584041002889824721 Q gi|254780837|r 292 VFRFIDLQNDKRSLRSAQVMERGIITSAYMAV--KP-HGIDSTYLAWLMRSYDLCKVFYAM-GSGLRQSLKFEDVKRLPV 367 (426) Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~yl~~~l~s~~~~~~~~~~-~~g~~~~i~~~~l~~~~i 367 (426) +++..+..+. .+.. ..+..++.+...+ +. ..+++.|+||++.+. ..++... +++++++|+.+++++++| T Consensus 81 ~~~~~~~~g~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~i~~~~l~~~~i 153 (205) T d1yf2a2 81 IISTRAPVGY-VAVL----TVESTFNQGCKGLFQKNNDSVNTEFYAYYLKFK--KNLLENLSGGSTFKELSKSMLENFKI 153 (205) T ss_dssp EEECSSSTTC-EEEE----SSCBEECTTEEEEEESCTTSCCHHHHHHHHHHT--HHHHHHHHCSSSSCCCCHHHHHHCEE T ss_pred EEEECCCEEE-EEEE----CCCCCEEECHHEECCCCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHCCCC T ss_conf 6530352378-9996----156505200010102442344699999988888--89998761674434444888851845 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC Q ss_conf 4898899999999999999999999999999999999999997788622336148 Q gi|254780837|r 368 LVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDLR 422 (426) Q Consensus 368 ~lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~tGki~V~ 422 (426) |+||++||++|+++|+ .+|++|+..+++++.|+++|++||++|||||+||| T Consensus 154 ~lP~~~eQ~~I~~~l~----~id~~i~~~~~~~~~l~~~k~~Ll~~l~tGel~v~ 204 (205) T d1yf2a2 154 PLPPLEEQKQIAKILS----SVDKSIELKKQKKEKLQRMKKKIMELLLTGKVRVK 204 (205) T ss_dssp EECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEC T ss_pred CCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC T ss_conf 5799999999999999----99999999999999999999999999837844525 No 5 >d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Probab=99.92 E-value=6e-26 Score=177.23 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=135.5 Q ss_pred CCCCCCCCEEEECCCEEEEEECCCCCCCC-----CEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEEC Q ss_conf 37068988698841239985066788877-----5368870000206412331122223466553378428978999422 Q gi|254780837|r 18 IGAIPKHWKVVPIKRFTKLNTGRTSESGK-----DIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLG 92 (426) Q Consensus 18 ~g~iP~~We~~kL~~i~~i~~g~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g 92 (426) |..+|++|+.++|||+|++.+|+++++.+ .+++++..+.. .+....+....+++++++.| T Consensus 1 ~~~~~~~w~~v~Lgdi~~~~~G~~~~~~~~~~~G~~p~i~~~~~~---------------~~~~~~~~~~~~~i~i~~~g 65 (181) T d1ydxa2 1 LEALQSQMHEITLGEIFNFKSGKYLKSEERLEEGKFPYYGAGIDN---------------TGFVAEPNTEKDTISIISNG 65 (181) T ss_dssp CTHHHHHCEEEEGGGTEEEEECCCCCGGGCBSSCSEEEESSSSSC---------------SSEESSCSBCSSEEEEECSS T ss_pred CCCCCCCEEEEEHHHEEEEECCCCCCHHHHCCCCCEEEEEECCCC---------------CCEEEEEECCCCCEEEEECC T ss_conf 977258638999445899948998874440368886899813404---------------20355301026745998447 Q ss_pred CCCCEEEEECCCEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH-HHHHHHHH Q ss_conf 8752379834648990743871466--67870222221117788988831568716665266634455544-33234577 Q gi|254780837|r 93 PYLRKAIIADFDGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPI-PPLAEQVL 169 (426) Q Consensus 93 ~~~g~~~i~~~~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~ipl-Ppl~eQ~k 169 (426) +.+|.+.+....+.++.+.+++++. ++++.|++|||.+ +..++...++|+++++++..+++++.+|+ ||++||++ T Consensus 66 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~fl~y~l~~--~~~~~~~~~~g~~~~~~~~~~l~~~~i~~~P~l~eQ~~ 143 (181) T d1ydxa2 66 YSLGNIRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKY--LQKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRK 143 (181) T ss_dssp TTTTCEEEESSCBEECTTEEEEEESSTTCCHHHHHHHHHH--HHHHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHH T ss_pred CCCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH T ss_conf 6456325644664302635886146765468899998888--88888875257742350588998765301688999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998887765433322223688999999998 Q gi|254780837|r 170 IREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIV 207 (426) Q Consensus 170 Iv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~ 207 (426) ||++|+ .+|++|+.+++.++.|+++|+++++++| T Consensus 144 I~~~l~----~~d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181) T d1ydxa2 144 AGKIVF----LLDQKLDQYKKELSSLTVIRDTLLKKLF 177 (181) T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999----9999999999999999999999999971 No 6 >d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Probab=99.91 E-value=2.7e-24 Score=166.92 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=124.7 Q ss_pred CCCCCCEEEECCCEEEEEECCCCCCCC-----CEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCC Q ss_conf 068988698841239985066788877-----536887000020641233112222346655337842897899942287 Q gi|254780837|r 20 AIPKHWKVVPIKRFTKLNTGRTSESGK-----DIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPY 94 (426) Q Consensus 20 ~iP~~We~~kL~~i~~i~~g~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~ 94 (426) ..|++|++++||++|++.+|.++++.. .+++++... ........+.+..+|++++..|++ T Consensus 8 ~~~~~W~~~~Lg~i~~i~~G~~~~~~~~~~~g~~p~~~~~~---------------~~~~~~~~~~~~~~~il~~~~g~~ 72 (193) T d1ydxa1 8 NNNINWTKRTIDSLFDLKKGEMLEKELITPEGKYEYFNGGV---------------KNSGRTDKFNTFKNTISVIVGGSC 72 (193) T ss_dssp SSSCCCEEEEHHHHEEEEECCCCCGGGCCTTCSEEEESSSS---------------SCSCEESCCCBCSSCEEEECBSST T ss_pred CCCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCEEEEEEEC---------------CCCCEEEEEEECCCCEEEEECCCC T ss_conf 99999899993179999589889864504578768997300---------------003236677531771799832654 Q ss_pred CCEEEEECCCEEEECCEEEEC--CC-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH-HHHHHHHH Q ss_conf 523798346489907438714--66-678702222211177889888315687166652666344555443-32345779 Q gi|254780837|r 95 LRKAIIADFDGICSTQFLVLQ--PK-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIP-PLAEQVLI 170 (426) Q Consensus 95 ~g~~~i~~~~~~~~~~~~vl~--~~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplP-pl~eQ~kI 170 (426) |..+ +......++.+..+++ .+ .+++.|++|++. .+..++...++|+++++|+.++++++.||+| |++||++| T Consensus 73 g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~--~~~~~~~~~~~gs~~~~i~~~~i~~~~i~lpP~~~eQ~~I 149 (193) T d1ydxa1 73 GYVR-LADKNFFCGQSNCTLNLLDPLELDLKFAYYALK--SQQERIEALAFGTTIQNIRISDLKELEIPFTSNKNEQHAI 149 (193) T ss_dssp TCEE-ECSSCBEECTTEEEEEESCTTTSCHHHHHHHHH--TTHHHHHTTCBCSSSCBCCHHHHHHCEEEECCCHHHHHHH T ss_pred CCEE-EECCCCCCCCCEEEEEECCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCHHHHHHH T ss_conf 5214-304432013643799966833246899876666--6899988750577553421988988776652269999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999888776543332222368899999999860 Q gi|254780837|r 171 REKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTK 209 (426) Q Consensus 171 v~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk 209 (426) |++|+. +|++|+.+++.++.|+++++++++++|+. T Consensus 150 ~~~l~~----ld~~i~~~~~~i~~l~~~~~~ll~~lft~ 184 (193) T d1ydxa1 150 ANTLSV----FDERLENLASLIEINRKLRDEYAHKLFSL 184 (193) T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999----99999999999999999999999998766 No 7 >d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Probab=99.82 E-value=2.2e-19 Score=136.35 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=115.6 Q ss_pred CCCCCCCCCCHHHHCCCCCCCC---CCCC-CCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCCE Q ss_conf 6866564330243101345676---4444-32157740455324653221210004433202422884899742166403 Q gi|254780837|r 227 LVPDHWEVKPFFALVTELNRKN---TKLI-ESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDK 302 (426) Q Consensus 227 ~IP~~W~~~~l~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~ 302 (426) .+|.+|++++|++++....+.. ..+. ++.+|++..++..... ........+|++++..+..+.. T Consensus 8 ~~~~~W~~~~Lg~i~~i~~G~~~~~~~~~~~g~~p~~~~~~~~~~~------------~~~~~~~~~~il~~~~g~~g~~ 75 (193) T d1ydxa1 8 NNNINWTKRTIDSLFDLKKGEMLEKELITPEGKYEYFNGGVKNSGR------------TDKFNTFKNTISVIVGGSCGYV 75 (193) T ss_dssp SSSCCCEEEEHHHHEEEEECCCCCGGGCCTTCSEEEESSSSSCSCE------------ESCCCBCSSCEEEECBSSTTCE T ss_pred CCCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCEEEEEEECCCCCE------------EEEEEECCCCEEEEECCCCCCE T ss_conf 9999989999317999958988986450457876899730000323------------6677531771799832654521 Q ss_pred EEEEEECCCCCEEEECH--HEECCC-CCCCHHHHHHHHHCHHHHHHHHHHCC-CEEEEECHHHHHCCEECCC-CHHHHHH Q ss_conf 79995023566077411--143057-76886889999709899999986258-4041002889824721489-8899999 Q gi|254780837|r 303 RSLRSAQVMERGIITSA--YMAVKP-HGIDSTYLAWLMRSYDLCKVFYAMGS-GLRQSLKFEDVKRLPVLVP-PIKEQFD 377 (426) Q Consensus 303 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~yl~~~l~s~~~~~~~~~~~~-g~~~~i~~~~l~~~~i~lP-~leeQ~~ 377 (426) + .. .....++.+ ++.+.+ ..+++.|+||++... ...+...++ +++++|+.++++++.||+| +++||++ T Consensus 76 ~-~~----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~--~~~~~~~~~gs~~~~i~~~~i~~~~i~lpP~~~eQ~~ 148 (193) T d1ydxa1 76 R-LA----DKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQ--QERIEALAFGTTIQNIRISDLKELEIPFTSNKNEQHA 148 (193) T ss_dssp E-EC----SSCBEECTTEEEEEESCTTTSCHHHHHHHHHTT--HHHHHTTCBCSSSCBCCHHHHHHCEEEECCCHHHHHH T ss_pred E-EE----CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH--HHHHHHHHCCCCCCEECHHHHHHHHHHHCCCHHHHHH T ss_conf 4-30----443201364379996683324689987666668--9998875057755342198898877665226999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 999999999999999999999999999999997788622336 Q gi|254780837|r 378 ITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQI 419 (426) Q Consensus 378 I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~tGki 419 (426) |+++|+. +|++|+.++++++.|+++|++||+++||++- T Consensus 149 I~~~l~~----ld~~i~~~~~~i~~l~~~~~~ll~~lft~~~ 186 (193) T d1ydxa1 149 IANTLSV----FDERLENLASLIEINRKLRDEYAHKLFSLDE 186 (193) T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 9999999----9999999999999999999999999876682 No 8 >d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Probab=99.82 E-value=1.7e-19 Score=137.11 Aligned_cols=167 Identities=10% Similarity=0.038 Sum_probs=118.0 Q ss_pred CCCCCCCCCHHHHCCCCCCC---CCCCC-CCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCCEE Q ss_conf 86656433024310134567---64444-321577404553246532212100044332024228848997421664037 Q gi|254780837|r 228 VPDHWEVKPFFALVTELNRK---NTKLI-ESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKR 303 (426) Q Consensus 228 IP~~W~~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~ 303 (426) +|.+|+.++|+++++..+++ +.++. ++.+|+++.++...... .......+++++...+...+.. T Consensus 4 ~~~~w~~v~Lgdi~~~~~G~~~~~~~~~~~G~~p~i~~~~~~~~~~------------~~~~~~~~~i~i~~~g~~ig~~ 71 (181) T d1ydxa2 4 LQSQMHEITLGEIFNFKSGKYLKSEERLEEGKFPYYGAGIDNTGFV------------AEPNTEKDTISIISNGYSLGNI 71 (181) T ss_dssp HHHHCEEEEGGGTEEEEECCCCCGGGCBSSCSEEEESSSSSCSSEE------------SSCSBCSSEEEEECSSTTTTCE T ss_pred CCCCEEEEEHHHEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCEE------------EEEECCCCCEEEEECCCCCCCE T ss_conf 2586389994458999489988744403688868998134042035------------5301026745998447645632 Q ss_pred EEEEECCCCCEEEECHHEECCC--CCCCHHHHHHHHHCHHHHHHHHH-HCCCEEEEECHHHHHCCEECC-CCHHHHHHHH Q ss_conf 9995023566077411143057--76886889999709899999986-258404100288982472148-9889999999 Q gi|254780837|r 304 SLRSAQVMERGIITSAYMAVKP--HGIDSTYLAWLMRSYDLCKVFYA-MGSGLRQSLKFEDVKRLPVLV-PPIKEQFDIT 379 (426) Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~yl~~~l~s~~~~~~~~~-~~~g~~~~i~~~~l~~~~i~l-P~leeQ~~I~ 379 (426) ... ...+.++.+.+++++ +.+++.|++|+|++.. .++.. ..++++++++..+++++.+|+ ||++||++|+ T Consensus 72 ~~~----~~~~~~~~~~~~~~~~~~~i~~~fl~y~l~~~~--~~~~~~~~g~~~~~~~~~~l~~~~i~~~P~l~eQ~~I~ 145 (181) T d1ydxa2 72 RYH----EIPWFNGTGSIALEPMNNEIYVPFFYCALKYLQ--KDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAG 145 (181) T ss_dssp EEE----SSCBEECTTEEEEEESSTTCCHHHHHHHHHHHH--HHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHHHH T ss_pred EEE----CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 564----466430263588614676546889999888888--88887525774235058899876530168899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999997788622 Q gi|254780837|r 380 NVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVT 416 (426) Q Consensus 380 ~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~t 416 (426) ++++ .+|++|+..+++++.|+++|++||+++|. T Consensus 146 ~~l~----~~d~~i~~~~~~i~~l~~lk~~Ll~~lF~ 178 (181) T d1ydxa2 146 KIVF----LLDQKLDQYKKELSSLTVIRDTLLKKLFP 178 (181) T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999----99999999999999999999999999716 No 9 >d2ih2a2 d.287.1.1 (A:244-413) DNA methylase TaqI, C-terminal domain {Thermus aquaticus [TaxId: 271]} Probab=54.82 E-value=4.6 Score=16.01 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=36.7 Q ss_pred HEECCCC--CCCHHHHHHHHHCHHHHHHHHHHCCCEEEEECHHHHHCCEEC Q ss_conf 1430577--688688999970989999998625840410028898247214 Q gi|254780837|r 320 YMAVKPH--GIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVL 368 (426) Q Consensus 320 ~~~~~~~--~~~~~yl~~~l~s~~~~~~~~~~~~g~~~~i~~~~l~~~~i~ 368 (426) +..+... .++.+.+.-+|+|...+.++...=.-..++|+...|+.++++ T Consensus 113 fHLlpKe~vdl~~~eVV~~LNSe~iqryvk~lyRd~~~HLti~qL~~lPv~ 163 (170) T d2ih2a2 113 FHLLPKEGVRLDPSSLVQWLNSEAMQKHVRTLYRDFVPHLTLRMLERLPVR 163 (170) T ss_dssp EEEEECTTEEECHHHHHHHHTSHHHHHHHHHHHTTSSSSCCHHHHTTCEEC T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 221221367868999999971799999999999863455329998548885 No 10 >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=46.84 E-value=3.8 Score=16.58 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=6.1 Q ss_pred CCCCCCCCEEE Q ss_conf 37068988698 Q gi|254780837|r 18 IGAIPKHWKVV 28 (426) Q Consensus 18 ~g~iP~~We~~ 28 (426) +|+||.||+.. T Consensus 10 ~gpLP~GWe~~ 20 (45) T d1tk7a1 10 LGPLPDGWEKK 20 (45) T ss_dssp TSSSSSSCCEE T ss_pred CCCCCCCCEEE T ss_conf 79899994587 No 11 >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=36.48 E-value=7.4 Score=14.73 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=7.2 Q ss_pred CCCCCCCCCEEEE Q ss_conf 2370689886988 Q gi|254780837|r 17 WIGAIPKHWKVVP 29 (426) Q Consensus 17 w~g~iP~~We~~k 29 (426) .+|+||.||+... T Consensus 8 ~~~pLP~gWe~~~ 20 (50) T d1i5hw_ 8 DLGPLPPGWEERT 20 (50) T ss_dssp CCSSCSTTEEEEE T ss_pred CCCCCCCCCEEEE T ss_conf 7798997845878 No 12 >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=35.39 E-value=6.6 Score=15.07 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=6.2 Q ss_pred CCCCCCCEEEE Q ss_conf 70689886988 Q gi|254780837|r 19 GAIPKHWKVVP 29 (426) Q Consensus 19 g~iP~~We~~k 29 (426) |.||.|||... T Consensus 1 GpLP~GWe~~~ 11 (33) T d2jmfa1 1 GPLPPGWEIRY 11 (33) T ss_dssp SCCCTTEEEEE T ss_pred CCCCCCEEEEE T ss_conf 93598801889 No 13 >d1y71a1 b.34.16.1 (A:4-127) Kinase-associated protein B {Bacillus cereus [TaxId: 1396]} Probab=27.83 E-value=13 Score=13.33 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=28.1 Q ss_pred EEEEECHHHHHCCEECCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0410028898247214898899--9999999999999999999999999999999999 Q gi|254780837|r 353 LRQSLKFEDVKRLPVLVPPIKE--QFDITNVINVETARIDVLVEKIEQSIVLLKERRS 408 (426) Q Consensus 353 ~~~~i~~~~l~~~~i~lP~lee--Q~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~ 408 (426) -+.++....++.+.--+|+.++ |+.+....+.+.+ .--+-.++.++.|++|++ T Consensus 66 Ek~~ip~~~vk~y~geipdY~~SLq~A~~~~~~~L~~---~~s~~a~~sL~~L~~Lkk 120 (124) T d1y71a1 66 EQTNIPEQMVKKYEGEIPDYTESLKLALETQMNSFSE---DDSPFAERSLETLQQLKK 120 (124) T ss_dssp CEEEEEGGGEEECCSCCCCHHHHHHHHHHHHHHTTTT---CCSHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHH T ss_conf 7753988766106788899799999999999999750---175999999999999988 No 14 >d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]} Probab=24.99 E-value=14 Score=13.01 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999997 Q gi|254780837|r 393 VEKIEQSIVLLKERRSSF 410 (426) Q Consensus 393 i~~~~~~i~~L~~lk~sL 410 (426) +++..++|+.|+.+|+.+ T Consensus 59 v~kLK~~IdaLNKiKke~ 76 (79) T d1zkea1 59 VERLKELINALNKIKKGL 76 (79) T ss_dssp HHHHHHHHHHHHHHHGGG T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999998888 Done!