BLAST/PSIBLAST alignment of GI: 254780837 and GI: 145629009 at iteration 1
>gi|145629009|ref|ZP_01784808.1| putative type I site-specific restriction-modification system, S subunit [Haemophilus influenzae 22.1-21] Length = 433
>gi|145639608|ref|ZP_01795212.1| putative type I site-specific restriction-modification system, S subunit [Haemophilus influenzae PittII] Length = 433
>gi|144978512|gb|EDJ88235.1| putative type I site-specific restriction-modification system, S subunit [Haemophilus influenzae 22.1-21] Length = 433
>gi|145271399|gb|EDK11312.1| putative type I site-specific restriction-modification system, S subunit [Haemophilus influenzae PittII] Length = 433
>gi|162949226|gb|ABY21299.1| probable type I restriction-modification system specificity protein [Haemophilus influenzae] Length = 433
>gi|309750476|gb|ADO80460.1| Probable type I restriction modification system, specificity component HsdS2 [Haemophilus influenzae R2866] Length = 433
 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 233/432 (53%), Gaps = 19/432 (4%)

Query: 5   KAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYL 64
           + Y +YKDSGV+W+G IP HW+ VP++   K    + +    D I + L  + +G  +Y 
Sbjct: 2   RRYERYKDSGVEWLGEIPTHWECVPLRSIFKFRNEKNNPIKTDNI-LSLS-IANGVTEYS 59

Query: 65  PKD--GNSRQSDTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPE 122
            ++  GN R+ D S+  +     I+   +   +    ++ + G  S  +  L   +    
Sbjct: 60  DENRGGNKRKDDLSSYKLAYPNDIVLNSMNVIVGAVGVSKYFGAISPVYYALSLHNQRAN 119

Query: 123 L--LQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPM------------PIPPLAEQV 168
           L   +    + +  + +    +G  +   +   +  I M            PI PL EQ 
Sbjct: 120 LSYYESIFKNENFQRGLLRFGKGILIKFGENGKMNTIRMKISQDDLKKLYFPISPLDEQQ 179

Query: 169 LIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLV 228
            I + +  +T +ID  +    + I LLKE KQ L+   VT+GLNPDV +KDSG+EW+G V
Sbjct: 180 KIAQFLDDKTAKIDRAVELAEKQIALLKEHKQILIQNAVTRGLNPDVPLKDSGVEWIGQV 239

Query: 229 PDHWEVKPFFALVTELNRKNTKLIESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDP 288
           P+HWE+     +  E  R N  + E+ +LSLSYG II K E +  GL PES+ETYQIV+P
Sbjct: 240 PEHWELTIGMNVFRENKRDNKGMKENTVLSLSYGKIIIKPEEKLFGLVPESFETYQIVEP 299

Query: 289 GEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKP-HGIDSTYLAWLMRSYDLCKVFY 347
            +I+ R  DLQND+ SLR+    ++GIITSAY+ +K  +   + +L + + + D+ KV Y
Sbjct: 300 NDIIIRCTDLQNDQTSLRTGLAQDKGIITSAYLNLKVINNYSAKFLHYYLHALDITKVLY 359

Query: 348 AMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERR 407
             GSGLRQ+L F D KRLP++   + EQ  I + ++ +T++ID  +      I  LKE +
Sbjct: 360 KFGSGLRQNLSFLDFKRLPIIDISLAEQQQIADYLDKQTSKIDQAIALKTAHIEKLKEYK 419

Query: 408 SSFIAAAVTGQI 419
           S  I   VTG++
Sbjct: 420 SVLINDVVTGKV 431