RPSBLAST alignment of GI: 254780837 and protein with PDBid: 1ydx

>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2 Length = 406
 Score = 67.8 bits (164), Expect = 5e-12
 Identities = 45/400 (11%), Positives = 99/400 (24%), Gaps = 39/400 (9%)

Query: 25  WKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKG 84
           W    I     L  G   E           ++ +  GKY   +G  + S  +      K 
Sbjct: 36  WTKRTIDSLFDLKKGEMLEK----------ELITPEGKYEYFNGGVKNSGRTDKFNTFKN 85

Query: 85  QILYGKLGPYLRKAIIAD--FDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQRIEAICE 142
            I     G      +     F G  +    +L P ++  +     L S    +RIEA+  
Sbjct: 86  TISVIVGGSCGYVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQQ--ERIEALAF 143

Query: 143 GATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQAL 202
           G T+ +     +  + +P      +   +  I       D  +      IE+ ++ +   
Sbjct: 144 GTTIQNIRISDLKELEIPFTSNKNE---QHAIANTLSVFDERLENLASLIEINRKLRDEY 200

Query: 203 VSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKNTKLIESNILSLSYG 262
              + +         K   +                 +    + K  K            
Sbjct: 201 AHKLFSLDEAFLSHWKLEAL------QSQMHEITLGEIFNFKSGKYLKS--------EER 246

Query: 263 NIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMA 322
               K      G+    +      +   I                          S  + 
Sbjct: 247 LEEGKFPYYGAGIDNTGFVAEPNTEKDTISIISNGYSLGNIRYHEIPWFNGT--GSIALE 304

Query: 323 VKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPV-LVPPIKEQFDITNV 381
              + I   +    ++                  L  +    + V  V   + Q     +
Sbjct: 305 PMNNEIYVPFFYCALKYLQKDIKERMKSDD-SPFLSLKLAGEIKVPYVKSFQLQRKAGKI 363

Query: 382 INVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDL 421
           +      +D  +++ ++ +  L   R + +        + 
Sbjct: 364 VF----LLDQKLDQYKKELSSLTVIRDTLLKKLFPDMTER 399