RPSBLAST alignment of GI: 254780837 and protein with PDBid: 1yf2

>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} SCOP: d.287.1.2 d.287.1.2 Length = 425

 Score =  102 bits (254), Expect = 2e-22
 Identities = 70/438 (15%), Positives = 157/438 (35%), Gaps = 40/438 (9%)

Query: 7   YPQYKDSGVQWIGAIPKHWKVVPIKR-FTKLNTGRTSESGK-------DIIYIGLEDVES 58
              +K +    IG IP+ W++V +K    K+  G T ++          I ++ +ED+ +
Sbjct: 5   EENFKKT---EIGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITN 61

Query: 59  GTGKYLPKDG---NSRQSDTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQ 115
              KYL            + S   I  K  +L+   G     AI             ++ 
Sbjct: 62  S-NKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETAINKIEVATNQAILGIIP 120

Query: 116 PKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKII 175
             ++L      + +          +    T  + + + + +  +P+PPL EQ  I + + 
Sbjct: 121 KDNILESEFL-YYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQKQIAKILT 179

Query: 176 AETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVK 235
                I+ +     +    L+  K+ L+  ++TKG+      K      +G +P+ WEV 
Sbjct: 180 KIDEGIEIIEKSINK----LERIKKGLMHKLLTKGIGHSRFKKSE----IGEIPEDWEVF 231

Query: 236 PFFALVTELNRKNTKLIESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRF 295
               +            +S        N I  L+   +  K     + + V    +    
Sbjct: 232 EIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCN 291

Query: 296 IDLQNDKRSLRSAQVMERGIITSAYMAVKPHG-----------IDSTYLAWLMRSYDLCK 344
           ++L      + S +     +      +    G           +++ + A+ ++      
Sbjct: 292 LNLIPKGSIIISTRAPVGYVAVLTVESTFNQGCKGLFQKNNDSVNTEFYAYYLKFKKNLL 351

Query: 345 VFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLK 404
              + GS   + L    ++   + +PP++EQ  I  +++     +D  +E  +Q    L+
Sbjct: 352 ENLSGGST-FKELSKSMLENFKIPLPPLEEQKQIAKILS----SVDKSIELKKQKKEKLQ 406

Query: 405 ERRSSFIAAAVTGQIDLR 422
             +   +   +TG++ ++
Sbjct: 407 RMKKKIMELLLTGKVRVK 424