Query gi|254780838|ref|YP_003065251.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 103 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 17:08:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780838.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2d2s_A Exocyst complex compon 37.3 6.5 0.00019 20.1 -0.5 20 79-98 67-86 (105) 2 >2vug_A PAB1020; RNA, ligase, 13.0 88 0.0026 13.8 1.3 10 47-56 16-25 (74) 3 >1x5w_A Zinc finger protein 64 12.2 91 0.0027 13.8 1.2 20 68-87 15-34 (37) 4 >2cdc_A Glucose dehydrogenase 10.5 1.2E+02 0.0035 13.1 1.3 13 33-45 26-38 (175) 5 >2d13_A Hypothetical protein P 10.0 1.3E+02 0.0039 12.8 3.1 29 33-61 69-100 (103) 6 >2z1k_A (NEO)pullulanase; hydr 9.2 86 0.0025 13.9 0.2 13 46-58 42-54 (81) 7 >2gq0_A Chaperone protein HTPG 8.8 1.4E+02 0.0043 12.6 1.2 34 47-81 92-125 (156) 8 >2wg3_C Hedgehog-interacting p 8.3 1.3E+02 0.0037 13.0 0.8 12 28-39 81-92 (126) 9 >1zdy_A Aromatic prenyltransfe 7.0 1.8E+02 0.0053 12.1 2.2 24 33-58 264-287 (307) 10 >3k01_A Acarbose/maltose bindi 6.7 1.6E+02 0.0047 12.4 0.6 10 8-17 4-13 (87) No 1 >>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} (A:1-105) Probab=37.31 E-value=6.5 Score=20.12 Aligned_cols=20 Identities=45% Similarity=0.622 Sum_probs=15.5 Q ss_pred HHHHHHCCCCHHHHHCCCCH Q ss_conf 42122013713341023668 Q gi|254780838|r 79 EIAIDQRRTPITQKLSMGNL 98 (103) Q Consensus 79 eiaidqrrtpitqklsmgnl 98 (103) -..++|||+-|+|||+--+. T Consensus 67 ~LK~~qrr~~I~~KLt~~i~ 86 (105) T 2d2s_A 67 SLKIEQRREAISSKLSQSIL 86 (105) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999983 No 2 >>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} (A:77-104,A:206-251) Probab=13.02 E-value=88 Score=13.84 Aligned_cols=10 Identities=60% Similarity=1.222 Sum_probs=7.8 Q ss_pred ECCCEEEEEE Q ss_conf 0354179987 Q gi|254780838|r 47 WSRGEFYVDL 56 (103) Q Consensus 47 wsrgefyvdl 56 (103) +.||||||.- T Consensus 16 fk~~efyvee 25 (74) T 2vug_A 16 FKRGEFYVEE 25 (74) T ss_dssp SSSCEEEEEE T ss_pred CCCCCEEEEE T ss_conf 3698389997 No 3 >>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:34-70) Probab=12.15 E-value=91 Score=13.75 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHHHHCCC Q ss_conf 77767774465421220137 Q gi|254780838|r 68 QQRSNILSHRKEIAIDQRRT 87 (103) Q Consensus 68 qqrsnilshrkeiaidqrrt 87 (103) .|+||+..|.|..--|.-.+ T Consensus 15 kq~SnL~kH~kk~H~D~~k~ 34 (37) T 1x5w_A 15 KQPSNLSKHMKKFHGDMSGP 34 (37) T ss_dssp SSHHHHHHHHHHHHSSSCCS T ss_pred CCHHHHHHHHHHCCCCCCCC T ss_conf 88889999987717989999 No 4 >>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* (A:1-143,A:335-366) Probab=10.46 E-value=1.2e+02 Score=13.10 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=5.9 Q ss_pred CCEEEEEEEEEEE Q ss_conf 6618899999987 Q gi|254780838|r 33 DGELFIRIMVFEI 45 (103) Q Consensus 33 dgelfirimvfei 45 (103) .|+..||+.---| T Consensus 26 pgeVLVkv~a~gi 38 (175) T 2cdc_A 26 YGKIKIRTIYNGI 38 (175) T ss_dssp CSSEEEEEEEEEE T ss_pred CCEEEEEEEEEEE T ss_conf 4989999999998 No 5 >>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} (A:125-227) Probab=10.04 E-value=1.3e+02 Score=12.85 Aligned_cols=29 Identities=21% Similarity=0.064 Sum_probs=22.7 Q ss_pred CCEEE---EEEEEEEEEECCCEEEEEEEECCC Q ss_conf 66188---999999876035417998740240 Q gi|254780838|r 33 DGELF---IRIMVFEISWSRGEFYVDLLPFNF 61 (103) Q Consensus 33 dgelf---irimvfeiswsrgefyvdllpfnf 61 (103) ||.|| |.|...++.|..+..|.++..... T Consensus 69 d~PlF~~~i~i~~~~~~~~~~~~~~~i~~~~L 100 (103) T 2d13_A 69 DMPFFKAKIVIDDAEKFWDGLSGKFIIKRAHL 100 (103) T ss_dssp ECTTCSEEEEEEEEEEEECSSCEEEEEEEEEE T ss_pred ECCCCCCCEEEEEEEEEEECCEEEEEEEEEEE T ss_conf 06455774377754899979878999999997 No 6 >>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} (A:395-475) Probab=9.18 E-value=86 Score=13.88 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=10.4 Q ss_pred EECCCEEEEEEEE Q ss_conf 6035417998740 Q gi|254780838|r 46 SWSRGEFYVDLLP 58 (103) Q Consensus 46 swsrgefyvdllp 58 (103) -|+||+--||||. T Consensus 42 ~~~RG~~avDllS 54 (81) T 2z1k_A 42 VFPRGGRAVDLLS 54 (81) T ss_dssp SCTTCCCEEETTT T ss_pred CCCCCCEEEEEEC T ss_conf 1168987999735 No 7 >>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli} (A:1-156) Probab=8.77 E-value=1.4e+02 Score=12.65 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=23.8 Q ss_pred ECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 03541799874024000123677767774465421 Q gi|254780838|r 47 WSRGEFYVDLLPFNFASRSSYQQRSNILSHRKEIA 81 (103) Q Consensus 47 wsrgefyvdllpfnfasrssyqqrsnilshrkeia 81 (103) +-||-.--+-||.| +||...|+...+-.-|+.|. T Consensus 92 FvkGVVDS~dLpln-vSRE~lQ~~~~l~~ir~~l~ 125 (156) T 2gq0_A 92 FVRGLIDSSDLPLN-VSREILQDSTVTRNLRNALT 125 (156) T ss_dssp TCEEEEEESSSCTT-CCHHHHHHCHHHHHHHHHHH T ss_pred HHHEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHH T ss_conf 75124235778753-45999876479999999999 No 8 >>2wg3_C Hedgehog-interacting protein; cytoplasm, lipoprotein, development, polymorphism, membrane, secreted, protease, palmitate, hydrolase; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A (C:1-62,C:323-386) Probab=8.35 E-value=1.3e+02 Score=12.96 Aligned_cols=12 Identities=50% Similarity=0.731 Sum_probs=7.8 Q ss_pred HHCCCCCEEEEE Q ss_conf 200136618899 Q gi|254780838|r 28 FVEKEDGELFIR 39 (103) Q Consensus 28 fvekedgelfir 39 (103) |.|.|.||+++- T Consensus 81 f~ede~ge~y~l 92 (126) T 2wg3_C 81 FGEDELGEVYIL 92 (126) T ss_dssp EEECTTCCEEEE T ss_pred EEECCCCCEEEE T ss_conf 877799988999 No 9 >>1zdy_A Aromatic prenyltransferase; PT-barrel; HET: T3A; 1.44A {Streptomyces SP} (A:) Probab=7.04 E-value=1.8e+02 Score=12.11 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=18.4 Q ss_pred CCEEEEEEEEEEEEECCCEEEEEEEE Q ss_conf 66188999999876035417998740 Q gi|254780838|r 33 DGELFIRIMVFEISWSRGEFYVDLLP 58 (103) Q Consensus 33 dgelfirimvfeiswsrgefyvdllp 58 (103) +||. |.+++.+.|+.|+=|+++-. T Consensus 264 ~~e~--~~~i~~~a~~~~geY~Kle~ 287 (307) T 1zdy_A 264 VGEK--RTLVYGLTLSPKEEYYKLGA 287 (307) T ss_dssp TTSC--CCEEEEEEECSSCEEEEEEE T ss_pred CCCC--EEEEEEEEECCCCCEEEEEE T ss_conf 8733--01678644348871586141 No 10 >>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A* (A:189-232,A:370-412) Probab=6.66 E-value=1.6e+02 Score=12.42 Aligned_cols=10 Identities=60% Similarity=1.305 Sum_probs=0.0 Q ss_pred HHHHHHHHHH Q ss_conf 9999996336 Q gi|254780838|r 8 FLAFLYAYGG 17 (103) Q Consensus 8 flaflyaygg 17 (103) +|.|||..|| T Consensus 4 ~LpFLYGEGg 13 (87) T 3k01_A 4 FLPYLYGEGG 13 (87) T ss_dssp GHHHHHHTTC T ss_pred HHHHHHHCCC T ss_conf 9999997499 Done!