Query gi|254780838|ref|YP_003065251.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 20:33:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780838.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1idp_A Scytalone dehydratase; 33.7 27 0.0011 15.9 3.1 23 30-52 136-158 (172)
2 2kbv_A Sodium/hydrogen exchang 11.5 77 0.0032 13.3 1.4 21 10-32 4-27 (28)
3 2htj_A P fimbrial regulatory p 10.7 73 0.003 13.5 1.1 28 64-93 26-53 (81)
4 2l01_A Uncharacterized protein 5.3 1.6E+02 0.0067 11.6 0.9 14 28-41 56-69 (77)
5 1zdy_A Aromatic prenyltransfer 5.2 1.6E+02 0.0068 11.5 2.2 20 39-58 268-287 (307)
6 2jx5_A GLUB(S27A); ubiquitin, 4.1 2E+02 0.0083 11.0 1.4 23 55-77 10-32 (69)
7 2bh1_X General secretion pathw 4.0 92 0.0039 12.9 -1.2 12 54-65 14-25 (96)
8 3eud_A Protein SHQ1; CS domain 3.9 2E+02 0.0085 11.0 0.5 39 27-65 20-60 (115)
9 2bid_A Protein (BID); programm 3.9 2.1E+02 0.0087 10.9 1.2 9 2-10 20-28 (197)
10 1uws_A Beta-galactosidase; gly 3.8 1.5E+02 0.0062 11.7 -0.4 7 43-49 80-86 (489)
No 1
>1idp_A Scytalone dehydratase; lyase, melanine biosynthesis; 1.45A {Magnaporthe grisea} SCOP: d.17.4.1 PDB: 2std_A* 1std_A* 3std_A* 6std_A* 4std_A* 5std_A* 7std_A*
Probab=33.70 E-value=27 Score=15.87 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=13.4
Q ss_pred CCCCCEEEEEEEEEEEEECCCEE
Q ss_conf 01366188999999876035417
Q gi|254780838|r 30 EKEDGELFIRIMVFEISWSRGEF 52 (103)
Q Consensus 30 ekedgelfirimvfeiswsrgef 52 (103)
.|.||.-.|.-+..++.|+.|.|
T Consensus 136 ~r~dG~WrIs~~~~~~~w~~Gn~ 158 (172)
T 1idp_A 136 KKIDGVWKFAGLKPDIRWGEFDF 158 (172)
T ss_dssp EEETTEEEEEEEEEEEEEEC---
T ss_pred EECCCEEEEEEEEEEEEEEECCH
T ss_conf 98399799999999988885778
No 2
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=11.46 E-value=77 Score=13.32 Aligned_cols=21 Identities=43% Similarity=1.050 Sum_probs=14.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHCCC
Q ss_conf 99996336---899999987620013
Q gi|254780838|r 10 AFLYAYGG---SVVFSLFESFFVEKE 32 (103)
Q Consensus 10 aflyaygg---svvfslfesffveke 32 (103)
.|..|||| .+.||| .|..||+
T Consensus 4 qfiiaygglrgaiafsl--g~ll~k~ 27 (28)
T 2kbv_A 4 QFIIAYGGLRGAIAFSL--GYLLDKK 27 (28)
T ss_dssp HHHTTTTSSCHHHHHHH--HHHHHHC
T ss_pred EEEEEECCCCHHHHEEE--HHHEECC
T ss_conf 79999467323121000--0111136
No 3
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=10.75 E-value=73 Score=13.45 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 123677767774465421220137133410
Q gi|254780838|r 64 RSSYQQRSNILSHRKEIAIDQRRTPITQKL 93 (103)
Q Consensus 64 rssyqqrsnilshrkeiaidqrrtpitqkl 93 (103)
-|.||.|--.+.-.||-.| ||+|..+-.
T Consensus 26 vsaYQARyYL~~LEKEgkI--rRsPlRRGa 53 (81)
T 2htj_A 26 VTDYQARYYLLLLEKAGMV--QRSPLRRGM 53 (81)
T ss_dssp SCHHHHHHHHHHHHHHTSE--EEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHCCE--ECCCCCCCH
T ss_conf 0899999999999770761--048500006
No 4
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=5.35 E-value=1.6e+02 Score=11.56 Aligned_cols=14 Identities=21% Similarity=0.774 Sum_probs=7.8
Q ss_pred HHCCCCCEEEEEEE
Q ss_conf 20013661889999
Q gi|254780838|r 28 FVEKEDGELFIRIM 41 (103)
Q Consensus 28 fvekedgelfirim 41 (103)
.++.++|++|+.+|
T Consensus 56 ~~~~~~~~l~v~L~ 69 (77)
T 2l01_A 56 VTSEVEGEIFVKLV 69 (77)
T ss_dssp EEEEETTEEEEEEC
T ss_pred EEEEECCEEEEEEE
T ss_conf 89952888999976
No 5
>1zdy_A Aromatic prenyltransferase; PT-barrel; HET: T3A; 1.44A {Streptomyces SP} SCOP: d.313.1.1 PDB: 1zcw_A* 1zdw_A* 1zb6_A*
Probab=5.20 E-value=1.6e+02 Score=11.50 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.6
Q ss_pred EEEEEEEEECCCEEEEEEEE
Q ss_conf 99999876035417998740
Q gi|254780838|r 39 RIMVFEISWSRGEFYVDLLP 58 (103)
Q Consensus 39 rimvfeiswsrgefyvdllp 58 (103)
|.+|+..+|+.++=|+++-.
T Consensus 268 ~~~v~~~~~~~~geY~Kle~ 287 (307)
T 1zdy_A 268 RTLVYGLTLSPKEEYYKLGA 287 (307)
T ss_dssp CCEEEEEEECSSCEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEE
T ss_conf 01678644348871586141
No 6
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=4.11 E-value=2e+02 Score=11.04 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=17.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 87402400012367776777446
Q gi|254780838|r 55 DLLPFNFASRSSYQQRSNILSHR 77 (103)
Q Consensus 55 dllpfnfasrssyqqrsnilshr 77 (103)
.-|||.......-.|-||.||.-
T Consensus 10 q~lpfelpaga~asqls~lls~~ 32 (69)
T 2jx5_A 10 QTLPFELPAGARASQLSNLLSSS 32 (69)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 54464266640588999898644
No 7
>2bh1_X General secretion pathway protein E,; transport protein, type II secretion, EPS, GSP, transmembrane, transport, ATP-binding; 2.4A {Vibrio cholerae} SCOP: d.52.10.1
Probab=4.02 E-value=92 Score=12.87 Aligned_cols=12 Identities=50% Similarity=0.896 Sum_probs=6.8
Q ss_pred EEEEECCCCHHH
Q ss_conf 987402400012
Q gi|254780838|r 54 VDLLPFNFASRS 65 (103)
Q Consensus 54 vdllpfnfasrs 65 (103)
+..||++||.|.
T Consensus 14 ~~~LP~~fAr~~ 25 (96)
T 2bh1_X 14 IRRLPFSFANRF 25 (96)
T ss_dssp CCSCCHHHHHHH
T ss_pred HHCCCHHHHHHC
T ss_conf 400989999978
No 8
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=3.94 E-value=2e+02 Score=10.97 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHCCCCCEEEEEEEEEEEEECC--CEEEEEEEECCCCHHH
Q ss_conf 62001366188999999876035--4179987402400012
Q gi|254780838|r 27 FFVEKEDGELFIRIMVFEISWSR--GEFYVDLLPFNFASRS 65 (103)
Q Consensus 27 ffvekedgelfirimvfeiswsr--gefyvdllpfnfasrs 65 (103)
|-++..|.-++|.|-+--+.-|. -|+|||---|.|-+..
T Consensus 20 F~isQDd~~V~I~I~~p~~r~s~~~~ei~id~~~F~F~~~P 60 (115)
T 3eud_A 20 FSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSP 60 (115)
T ss_dssp EEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEETT
T ss_pred EEEEECCCEEEEEEEECCCCCCCCCEEEEECCCEEEEECCC
T ss_conf 89886899899999936300267761899748899996366
No 9
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=3.87 E-value=2.1e+02 Score=10.93 Aligned_cols=9 Identities=67% Similarity=1.180 Sum_probs=0.0
Q ss_pred CHHHHHHHH
Q ss_conf 057999999
Q gi|254780838|r 2 NSLLFGFLA 10 (103)
Q Consensus 2 nsllfgfla 10 (103)
|-|+||||.
T Consensus 20 ~lLvfgFLq 28 (197)
T 2bid_A 20 NLLVFGFLQ 28 (197)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 10
>1uws_A Beta-galactosidase; glycoside hydrolase, family 1, hydrolase, archaeon 2-deoxy- 2-fluoro-glucose; HET: G2F; 1.95A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 1gow_A 1uwi_A
Probab=3.75 E-value=1.5e+02 Score=11.73 Aligned_cols=7 Identities=43% Similarity=1.298 Sum_probs=0.0
Q ss_pred EEEEECC
Q ss_conf 9876035
Q gi|254780838|r 43 FEISWSR 49 (103)
Q Consensus 43 feiswsr 49 (103)
|-|||||
T Consensus 80 fSIsWsR 86 (489)
T 1uws_A 80 LNVEWSR 86 (489)
T ss_dssp EECCHHH
T ss_pred EECCHHH
T ss_conf 1062875
Done!