BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780838|ref|YP_003065251.1| hypothetical protein
CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780838|ref|YP_003065251.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040515|gb|ACT57311.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN 60
           MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN
Sbjct: 1   MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN 60

Query: 61  FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103
           FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE
Sbjct: 61  FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103


>gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
 gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
          Length = 774

 Score = 35.7 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 56  LLPFNFASRSSYQQRS-NILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103
           L+P N+A     Q RS ++LS R  +A+D+R   +  +   GNL++++E
Sbjct: 444 LIPINYADAKDLQDRSKDMLSPRGSLAVDERTNVLIARDVAGNLNQIEE 492


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.326    0.140    0.400 

Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,250,190,289
Number of Sequences: 14124377
Number of extensions: 56800914
Number of successful extensions: 148584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 148581
Number of HSP's gapped (non-prelim): 3
length of query: 103
length of database: 4,842,793,630
effective HSP length: 72
effective length of query: 31
effective length of database: 3,825,838,486
effective search space: 118600993066
effective search space used: 118600993066
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.7 bits)