RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780838|ref|YP_003065251.1| hypothetical protein
CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>gnl|CDD|38941 KOG3737, KOG3737, KOG3737, Predicted polypeptide
           N-acetylgalactosaminyltransferase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 603

 Score = 26.5 bits (58), Expect = 1.7
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 50  GEFYVDLLPFNFASRSSYQQRSNILSHRK---EIAIDQR------RTPITQKLSMGNLSE 100
           G  Y  L+P+ F           IL +     E   D        R P  Q L  G++SE
Sbjct: 385 GHVYRSLMPYQFGKPPIKVGSPPILINYVRVVETWWDDYKDYFYTREPEAQALPYGDISE 444

Query: 101 L 101
            
Sbjct: 445 Q 445


>gnl|CDD|39457 KOG4256, KOG4256, KOG4256, Kinetochore component [Cell cycle control,
            cell division, chromosome partitioning].
          Length = 2209

 Score = 24.8 bits (53), Expect = 5.4
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 2    NSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFNF 61
            + + FG  AF +A   +    L E     K +  L      FE         +D  P   
Sbjct: 1639 HKIFFGIAAFFWAILRTNHIELEEEISFPKRELLLIKDEKEFEKD----GLMLD--PAGH 1692

Query: 62   ASRSSYQQR-SNILSHRKEIAIDQRRTPITQKLS 94
            +     +     +   +      +    IT+++ 
Sbjct: 1693 SFEKKLEDDGLKLSDAKNSDLALKEDAKITERIE 1726


>gnl|CDD|146444 pfam03805, CLAG, Cytoadherence-linked asexual protein.  Clag
           (cytoadherence linked asexual gene) is a malaria surface
           protein which has been shown to be involved in the
           binding of Plasmodium falciparum infected erythrocytes
           to host endothelial cells, a process termed
           cytoadherence. The cytoadherence phenomenon is
           associated with the sequestration of infected
           erythrocytes in the blood vessels of the brain, cerebral
           malaria. Clag is a multi-gene family in Plasmodium
           falciparum with at least 9 members identified to date.
           Orthologous proteins in the rodent malaria species
           Plasmodium chabaudi (Lawson D Unpubl. obs.) suggest that
           the gene family is found in other malaria species and
           may play a more generic role in cytoadherence.
          Length = 1282

 Score = 24.3 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8   FLAFLYAYGGSVVFSLFESFF 28
           FL F Y Y GS++ SL  S F
Sbjct: 955 FLTFAYVYYGSIMDSLTNSLF 975


>gnl|CDD|36433 KOG1219, KOG1219, KOG1219, Uncharacterized conserved protein,
           contains laminin, cadherin and EGF domains [Signal
           transduction mechanisms].
          Length = 4289

 Score = 23.8 bits (51), Expect = 9.8
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 2   NSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSR 49
           N +  G    L A  G   FSL  +F V+ E       +  F    + 
Sbjct: 300 NDMTIGINLSLQAKNGPQFFSLK-NFTVKFEKEVYRFSVSEFAPPNTP 346


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,263,808
Number of extensions: 62126
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 10
Length of query: 103
Length of database: 6,263,737
Length adjustment: 70
Effective length of query: 33
Effective length of database: 4,751,107
Effective search space: 156786531
Effective search space used: 156786531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)