Query gi|254780839|ref|YP_003065252.1| hypothetical protein CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 32
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 00:54:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780839.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3389 consensus 31.3 25 0.00064 18.1 1.4 16 11-26 96-113 (178)
2 pfam04834 Adeno_E3_14_5 Early 29.9 22 0.00055 18.4 0.9 12 15-26 45-56 (97)
3 COG4752 Uncharacterized protei 29.0 33 0.00084 17.5 1.6 13 12-24 135-147 (190)
4 TIGR01711 gspJ general secreti 26.3 23 0.00058 18.3 0.4 19 13-31 89-108 (202)
5 cd02685 MIT_C MIT_C; domain fo 22.4 34 0.00087 17.5 0.7 19 11-29 96-114 (148)
6 KOG4509 consensus 18.1 51 0.0013 16.6 0.9 21 10-30 194-214 (247)
7 pfam04597 Ribophorin_I Ribopho 15.5 64 0.0016 16.2 0.8 22 8-29 290-312 (429)
8 TIGR02796 tolQ protein TolQ; I 15.3 2 5E-05 23.3 -6.9 16 4-19 19-34 (219)
9 KOG2291 consensus 12.4 98 0.0025 15.3 1.1 13 13-25 325-337 (602)
10 PTZ00147 histoaspartic proteas 12.1 1.3E+02 0.0034 14.7 1.7 12 12-23 152-163 (453)
No 1
>KOG3389 consensus
Probab=31.28 E-value=25 Score=18.08 Aligned_cols=16 Identities=56% Similarity=1.138 Sum_probs=12.9
Q ss_pred EEEEEEEEC--CCCCCCC
Q ss_conf 878999842--6788322
Q gi|254780839|r 11 FKWSIIFDT--GWNNPLG 26 (32)
Q Consensus 11 fkwsiifdt--gwnnplg 26 (32)
-||.|-||+ -|.|||-
T Consensus 96 kkWkiefd~r~rWENPLM 113 (178)
T KOG3389 96 KKWKIEFDSRLRWENPLM 113 (178)
T ss_pred CCEEEEECCHHHCCCCCC
T ss_conf 516897211320127543
No 2
>pfam04834 Adeno_E3_14_5 Early E3 14.5 kDa protein. The E3B 14.5 kDa was first identified in Human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein.
Probab=29.94 E-value=22 Score=18.38 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=9.2
Q ss_pred EEEECCCCCCCC
Q ss_conf 998426788322
Q gi|254780839|r 15 IIFDTGWNNPLG 26 (32)
Q Consensus 15 iifdtgwnnplg 26 (32)
-.||.|||.|-.
T Consensus 45 p~~d~GWn~~~a 56 (97)
T pfam04834 45 PCLDFGWNAPNA 56 (97)
T ss_pred HEEECCCCCCCC
T ss_conf 305125478765
No 3
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.02 E-value=33 Score=17.54 Aligned_cols=13 Identities=54% Similarity=1.375 Sum_probs=11.1
Q ss_pred EEEEEEECCCCCC
Q ss_conf 7899984267883
Q gi|254780839|r 12 KWSIIFDTGWNNP 24 (32)
Q Consensus 12 kwsiifdtgwnnp 24 (32)
.|-|.|.|||.-|
T Consensus 135 p~LilfGTGwGlp 147 (190)
T COG4752 135 PWLILFGTGWGLP 147 (190)
T ss_pred CEEEEECCCCCCC
T ss_conf 6799963788998
No 4
>TIGR01711 gspJ general secretion pathway protein J; InterPro: IPR010055 This entry represents GspJ, one of two proteins highly conserved at their N-termini and described by Bacterial type II secretion system protein I/J but is easily separable phylogenetically. The other is the General secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in Escherichia coli K-12 - present but not yet demonstrated to act on any target.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=26.26 E-value=23 Score=18.28 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=11.7
Q ss_pred EEEEE-ECCCCCCCCCCCCC
Q ss_conf 89998-42678832264025
Q gi|254780839|r 13 WSIIF-DTGWNNPLGNGVKS 31 (32)
Q Consensus 13 wsiif-dtgwnnplgngvks 31 (32)
|.+.| --||.||.|.--.|
T Consensus 89 ~g~~F~RgGW~NP~g~~pRs 108 (202)
T TIGR01711 89 QGLEFVRGGWRNPDGQLPRS 108 (202)
T ss_pred EEEEEEECCCCCCCCCCCCC
T ss_conf 06778734643854457742
No 5
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=22.42 E-value=34 Score=17.45 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=15.6
Q ss_pred EEEEEEEECCCCCCCCCCC
Q ss_conf 8789998426788322640
Q gi|254780839|r 11 FKWSIIFDTGWNNPLGNGV 29 (32)
Q Consensus 11 fkwsiifdtgwnnplgngv 29 (32)
-.-+|++|+||---+|.|.
T Consensus 96 HdR~I~~dnGW~IkigRGL 114 (148)
T cd02685 96 HDREIRTDNGWIIKIGRGL 114 (148)
T ss_pred CCEEEEECCCEEEEECCCC
T ss_conf 4227994697489954752
No 6
>KOG4509 consensus
Probab=18.10 E-value=51 Score=16.62 Aligned_cols=21 Identities=38% Similarity=0.890 Sum_probs=16.3
Q ss_pred EEEEEEEEECCCCCCCCCCCC
Q ss_conf 887899984267883226402
Q gi|254780839|r 10 VFKWSIIFDTGWNNPLGNGVK 30 (32)
Q Consensus 10 vfkwsiifdtgwnnplgngvk 30 (32)
...-.||||.||--..|.|..
T Consensus 194 IHDREI~FdNGWmiK~GRGLD 214 (247)
T KOG4509 194 IHDREIIFDNGWMIKIGRGLD 214 (247)
T ss_pred CCCEEEEECCCEEEEECCCCC
T ss_conf 022047851854898547632
No 7
>pfam04597 Ribophorin_I Ribophorin I. Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (EC:2.4.1.119). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are though to be responsible for OST catalytic activity. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function Most family members are predicted to have a transmembrane helix at the C terminus of this region.
Probab=15.48 E-value=64 Score=16.17 Aligned_cols=22 Identities=41% Similarity=0.979 Sum_probs=15.8
Q ss_pred EEEE-EEEEEEECCCCCCCCCCC
Q ss_conf 7888-789998426788322640
Q gi|254780839|r 8 FSVF-KWSIIFDTGWNNPLGNGV 29 (32)
Q Consensus 8 fsvf-kwsiifdtgwnnplgngv 29 (32)
|.+| -|.--|-.|||+|+-+-+
T Consensus 290 fPlfGGWk~~FtiGyn~pl~~fl 312 (429)
T pfam04597 290 FPLFGGWKYNFTIGWNLPLSDFL 312 (429)
T ss_pred CCCCCCCCEEEEEECCCCHHHEE
T ss_conf 85238702225987337458828
No 8
>TIGR02796 tolQ protein TolQ; InterPro: IPR014163 TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses proton motive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this entry describes TolQ specifically, as found in tol-pal operons. A close homologue, excluded from this entry, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species..
Probab=15.32 E-value=2 Score=23.28 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=11.8
Q ss_pred EEEEEEEEEEEEEEEC
Q ss_conf 1267788878999842
Q gi|254780839|r 4 GLLHFSVFKWSIIFDT 19 (32)
Q Consensus 4 gllhfsvfkwsiifdt 19 (32)
+|+-+|+.-|+|||+-
T Consensus 19 ~Ll~~Si~SWaiIf~K 34 (219)
T TIGR02796 19 ILLLASIISWAIIFQK 34 (219)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 9
>KOG2291 consensus
Probab=12.36 E-value=98 Score=15.29 Aligned_cols=13 Identities=46% Similarity=1.035 Sum_probs=0.0
Q ss_pred EEEEEECCCCCCC
Q ss_conf 8999842678832
Q gi|254780839|r 13 WSIIFDTGWNNPL 25 (32)
Q Consensus 13 wsiifdtgwnnpl 25 (32)
|.--|--|||+|+
T Consensus 325 Wkt~ftiGy~lP~ 337 (602)
T KOG2291 325 WKTNFTIGYNLPL 337 (602)
T ss_pred CEEEEEEECCCCH
T ss_conf 3035897427837
No 10
>PTZ00147 histoaspartic protease (plasmepsin I or II); Provisional
Probab=12.09 E-value=1.3e+02 Score=14.65 Aligned_cols=12 Identities=58% Similarity=0.935 Sum_probs=0.0
Q ss_pred EEEEEEECCCCC
Q ss_conf 789998426788
Q gi|254780839|r 12 KWSIIFDTGWNN 23 (32)
Q Consensus 12 kwsiifdtgwnn 23 (32)
+..+|||||-.|
T Consensus 152 ~F~VIFDTGSSn 163 (453)
T PTZ00147 152 KFNFIFDTGSAN 163 (453)
T ss_pred EEEEEECCCCCC
T ss_conf 479998578757
Done!