Query         gi|254780839|ref|YP_003065252.1| hypothetical protein CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 32
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 20:39:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780839.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1e0n_A Hypothetical protein; Y   6.9 1.4E+02  0.0059   13.5   1.2   10   12-21      2-11  (27)
  2 1o9a_B FNBB, fibronectin bindi   5.9      58  0.0024   15.4  -1.2   15    9-23     20-34  (36)
  3 1q87_A 39 kDa initiator bindin   4.4 1.3E+02  0.0054   13.7  -0.2   19    9-27    158-176 (221)
  4 2bh8_A 1B11; transcription, mo   4.0 2.7E+02   0.011   12.2   1.8   11    4-14     87-97  (101)
  5 2jya_A AGR_C_3324P, uncharacte   3.3 3.1E+02   0.013   11.9   1.6   15   12-26     25-42  (106)
  6 2rop_A Copper-transporting ATP   2.7 2.5E+02    0.01   12.4  -0.1   16   12-27    186-201 (202)
  7 1vq3_A Phosphoribosylformylgly   2.7 3.6E+02   0.015   11.6   0.7   24    7-30     12-37  (94)
  8 2qdr_A Uncharacterized protein   2.6 3.7E+02   0.015   11.6   0.7   13   14-26     95-107 (303)
  9 3hgt_A HDA1 complex subunit 3;   2.4 3.9E+02   0.016   11.4   0.5    8   15-22    198-205 (328)
 10 1qfq_B N36, 36-MER N-terminal    2.3 4.2E+02   0.017   11.3   0.9   10   23-32     21-30  (35)

No 1  
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=6.92  E-value=1.4e+02  Score=13.53  Aligned_cols=10  Identities=40%  Similarity=0.980  Sum_probs=7.4

Q ss_pred             EEEEEEECCC
Q ss_conf             7899984267
Q gi|254780839|r   12 KWSIIFDTGW   21 (32)
Q Consensus        12 kwsiifdtgw   21 (32)
                      -|.||+..|-
T Consensus         2 gweiihengr   11 (27)
T 1e0n_A            2 GWEIIHENGR   11 (27)
T ss_dssp             CEEEEESSSS
T ss_pred             CCEEEECCCC
T ss_conf             7266622893


No 2  
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=5.86  E-value=58  Score=15.35  Aligned_cols=15  Identities=47%  Similarity=0.638  Sum_probs=10.7

Q ss_pred             EEEEEEEEEECCCCC
Q ss_conf             888789998426788
Q gi|254780839|r    9 SVFKWSIIFDTGWNN   23 (32)
Q Consensus         9 svfkwsiifdtgwnn   23 (32)
                      |--|-||-||..|..
T Consensus        20 skpk~sihfdnewpk   34 (36)
T 1o9a_B           20 SKPKLSIHFDNEWPK   34 (36)
T ss_dssp             SCCCCBCCCCCCCSC
T ss_pred             CCCCEEEECCCCCCC
T ss_conf             786257862675777


No 3  
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A
Probab=4.44  E-value=1.3e+02  Score=13.73  Aligned_cols=19  Identities=26%  Similarity=0.372  Sum_probs=14.9

Q ss_pred             EEEEEEEEEECCCCCCCCC
Q ss_conf             8887899984267883226
Q gi|254780839|r    9 SVFKWSIIFDTGWNNPLGN   27 (32)
Q Consensus         9 svfkwsiifdtgwnnplgn   27 (32)
                      -+|||+-.+-.+||-|+-.
T Consensus       158 ~i~k~~~G~~~vyN~P~v~  176 (221)
T 1q87_A          158 LILKTPTGIRKIWNKPLIE  176 (221)
T ss_dssp             EEEEETTEEEEEEECTTSC
T ss_pred             EEEEECCCEEEEECCCCCC
T ss_conf             9999669568971466547


No 4  
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, activator, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=3.98  E-value=2.7e+02  Score=12.22  Aligned_cols=11  Identities=45%  Similarity=1.093  Sum_probs=7.7

Q ss_pred             EEEEEEEEEEE
Q ss_conf             12677888789
Q gi|254780839|r    4 GLLHFSVFKWS   14 (32)
Q Consensus         4 gllhfsvfkws   14 (32)
                      ||+|.|-..|+
T Consensus        87 GlvHise~sw~   97 (101)
T 2bh8_A           87 GLVHLSDISWA   97 (101)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEECCCCCHH
T ss_conf             77880105300


No 5  
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str}
Probab=3.34  E-value=3.1e+02  Score=11.92  Aligned_cols=15  Identities=27%  Similarity=0.572  Sum_probs=10.6

Q ss_pred             EEEEEEEC---CCCCCCC
Q ss_conf             78999842---6788322
Q gi|254780839|r   12 KWSIIFDT---GWNNPLG   26 (32)
Q Consensus        12 kwsiifdt---gwnnplg   26 (32)
                      +|-+-|+.   -|.|||-
T Consensus        25 ~W~Lef~~~~~~~~dpLM   42 (106)
T 2jya_A           25 VWVLEFDAEVPRKIDPIM   42 (106)
T ss_dssp             CEEEEEEEECCSCCCTTT
T ss_pred             CEEEEEECCCCCCCCCCC
T ss_conf             579987167774347874


No 6  
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=2.71  E-value=2.5e+02  Score=12.38  Aligned_cols=16  Identities=38%  Similarity=0.592  Sum_probs=9.2

Q ss_pred             EEEEEEECCCCCCCCC
Q ss_conf             7899984267883226
Q gi|254780839|r   12 KWSIIFDTGWNNPLGN   27 (32)
Q Consensus        12 kwsiifdtgwnnplgn   27 (32)
                      .-+++-|+.=+||+||
T Consensus       186 ~a~~~~~~~~~~~~~~  201 (202)
T 2rop_A          186 EASVVSESCSTNPLGN  201 (202)
T ss_dssp             CEEEC-----------
T ss_pred             CEEECCCCCCCCCCCC
T ss_conf             7087777777787668


No 7  
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244, PURS subunit (EC 6.3.5.3), structural genomics; 1.90A {Thermotoga maritima MSB8} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=2.71  E-value=3.6e+02  Score=11.61  Aligned_cols=24  Identities=25%  Similarity=0.667  Sum_probs=17.3

Q ss_pred             EEEEEEEEEE--EECCCCCCCCCCCC
Q ss_conf             7788878999--84267883226402
Q gi|254780839|r    7 HFSVFKWSII--FDTGWNNPLGNGVK   30 (32)
Q Consensus         7 hfsvfkwsii--fdtgwnnplgngvk   30 (32)
                      |...|||.|.  +-.|..+|-|..|+
T Consensus        12 ~m~~~k~~V~V~lK~gVlDPqG~aV~   37 (94)
T 1vq3_A           12 HLPLFKFAIDVQYRSNVRDPRGETIE   37 (94)
T ss_dssp             CCCEEEEEEEEEECTTSCCHHHHHHH
T ss_pred             CCEEEEEEEEEEECCCCCCHHHHHHH
T ss_conf             52327999999978987184899999


No 8  
>2qdr_A Uncharacterized protein; ZP_00345151.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme pcc 73102}
Probab=2.59  E-value=3.7e+02  Score=11.57  Aligned_cols=13  Identities=15%  Similarity=0.580  Sum_probs=8.0

Q ss_pred             EEEEECCCCCCCC
Q ss_conf             9998426788322
Q gi|254780839|r   14 SIIFDTGWNNPLG   26 (32)
Q Consensus        14 siifdtgwnnplg   26 (32)
                      -+.|++||..|-|
T Consensus        95 ~V~f~~g~~~Ppg  107 (303)
T 2qdr_A           95 RVVLPPKFEAPSG  107 (303)
T ss_dssp             EEEECTTCEECCB
T ss_pred             EEEECCCCCCCCC
T ss_conf             9996788778996


No 9  
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=2.35  E-value=3.9e+02  Score=11.44  Aligned_cols=8  Identities=38%  Similarity=0.443  Sum_probs=0.0

Q ss_pred             EEEECCCC
Q ss_conf             99842678
Q gi|254780839|r   15 IIFDTGWN   22 (32)
Q Consensus        15 iifdtgwn   22 (32)
                      |+||.-||
T Consensus       198 I~~D~~wN  205 (328)
T 3hgt_A          198 ICLDTTVD  205 (328)
T ss_dssp             EECSTTCC
T ss_pred             EEECCCCC
T ss_conf             99589889


No 10 
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=2.32  E-value=4.2e+02  Score=11.30  Aligned_cols=10  Identities=60%  Similarity=0.773  Sum_probs=0.0

Q ss_pred             CCCCCCCCCC
Q ss_conf             8322640259
Q gi|254780839|r   23 NPLGNGVKSK   32 (32)
Q Consensus        23 nplgngvksk   32 (32)
                      |||--||..|
T Consensus        21 npl~vgvsak   30 (35)
T 1qfq_B           21 NPLLVGVSAK   30 (35)
T ss_dssp             CGGGSSSSCC
T ss_pred             CCEEEEECCC
T ss_conf             8616551256


Done!