Query gi|254780839|ref|YP_003065252.1| hypothetical protein CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 32 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 20:39:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780839.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1e0n_A Hypothetical protein; Y 6.9 1.4E+02 0.0059 13.5 1.2 10 12-21 2-11 (27) 2 1o9a_B FNBB, fibronectin bindi 5.9 58 0.0024 15.4 -1.2 15 9-23 20-34 (36) 3 1q87_A 39 kDa initiator bindin 4.4 1.3E+02 0.0054 13.7 -0.2 19 9-27 158-176 (221) 4 2bh8_A 1B11; transcription, mo 4.0 2.7E+02 0.011 12.2 1.8 11 4-14 87-97 (101) 5 2jya_A AGR_C_3324P, uncharacte 3.3 3.1E+02 0.013 11.9 1.6 15 12-26 25-42 (106) 6 2rop_A Copper-transporting ATP 2.7 2.5E+02 0.01 12.4 -0.1 16 12-27 186-201 (202) 7 1vq3_A Phosphoribosylformylgly 2.7 3.6E+02 0.015 11.6 0.7 24 7-30 12-37 (94) 8 2qdr_A Uncharacterized protein 2.6 3.7E+02 0.015 11.6 0.7 13 14-26 95-107 (303) 9 3hgt_A HDA1 complex subunit 3; 2.4 3.9E+02 0.016 11.4 0.5 8 15-22 198-205 (328) 10 1qfq_B N36, 36-MER N-terminal 2.3 4.2E+02 0.017 11.3 0.9 10 23-32 21-30 (35) No 1 >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Probab=6.92 E-value=1.4e+02 Score=13.53 Aligned_cols=10 Identities=40% Similarity=0.980 Sum_probs=7.4 Q ss_pred EEEEEEECCC Q ss_conf 7899984267 Q gi|254780839|r 12 KWSIIFDTGW 21 (32) Q Consensus 12 kwsiifdtgw 21 (32) -|.||+..|- T Consensus 2 gweiihengr 11 (27) T 1e0n_A 2 GWEIIHENGR 11 (27) T ss_dssp CEEEEESSSS T ss_pred CCEEEECCCC T ss_conf 7266622893 No 2 >1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae} Probab=5.86 E-value=58 Score=15.35 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=10.7 Q ss_pred EEEEEEEEEECCCCC Q ss_conf 888789998426788 Q gi|254780839|r 9 SVFKWSIIFDTGWNN 23 (32) Q Consensus 9 svfkwsiifdtgwnn 23 (32) |--|-||-||..|.. T Consensus 20 skpk~sihfdnewpk 34 (36) T 1o9a_B 20 SKPKLSIHFDNEWPK 34 (36) T ss_dssp SCCCCBCCCCCCCSC T ss_pred CCCCEEEECCCCCCC T ss_conf 786257862675777 No 3 >1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A Probab=4.44 E-value=1.3e+02 Score=13.73 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=14.9 Q ss_pred EEEEEEEEEECCCCCCCCC Q ss_conf 8887899984267883226 Q gi|254780839|r 9 SVFKWSIIFDTGWNNPLGN 27 (32) Q Consensus 9 svfkwsiifdtgwnnplgn 27 (32) -+|||+-.+-.+||-|+-. T Consensus 158 ~i~k~~~G~~~vyN~P~v~ 176 (221) T 1q87_A 158 LILKTPTGIRKIWNKPLIE 176 (221) T ss_dssp EEEEETTEEEEEEECTTSC T ss_pred EEEEECCCEEEEECCCCCC T ss_conf 9999669568971466547 No 4 >2bh8_A 1B11; transcription, molecular evolution, unique architecture, activator, transcription regulation, phosphorylation; 1.9A {Escherichia coli} Probab=3.98 E-value=2.7e+02 Score=12.22 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=7.7 Q ss_pred EEEEEEEEEEE Q ss_conf 12677888789 Q gi|254780839|r 4 GLLHFSVFKWS 14 (32) Q Consensus 4 gllhfsvfkws 14 (32) ||+|.|-..|+ T Consensus 87 GlvHise~sw~ 97 (101) T 2bh8_A 87 GLVHLSDISWA 97 (101) T ss_dssp EEEEEEEEEEC T ss_pred EEEECCCCCHH T ss_conf 77880105300 No 5 >2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} Probab=3.34 E-value=3.1e+02 Score=11.92 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=10.6 Q ss_pred EEEEEEEC---CCCCCCC Q ss_conf 78999842---6788322 Q gi|254780839|r 12 KWSIIFDT---GWNNPLG 26 (32) Q Consensus 12 kwsiifdt---gwnnplg 26 (32) +|-+-|+. -|.|||- T Consensus 25 ~W~Lef~~~~~~~~dpLM 42 (106) T 2jya_A 25 VWVLEFDAEVPRKIDPIM 42 (106) T ss_dssp CEEEEEEEECCSCCCTTT T ss_pred CEEEEEECCCCCCCCCCC T ss_conf 579987167774347874 No 6 >2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Probab=2.71 E-value=2.5e+02 Score=12.38 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=9.2 Q ss_pred EEEEEEECCCCCCCCC Q ss_conf 7899984267883226 Q gi|254780839|r 12 KWSIIFDTGWNNPLGN 27 (32) Q Consensus 12 kwsiifdtgwnnplgn 27 (32) .-+++-|+.=+||+|| T Consensus 186 ~a~~~~~~~~~~~~~~ 201 (202) T 2rop_A 186 EASVVSESCSTNPLGN 201 (202) T ss_dssp CEEEC----------- T ss_pred CEEECCCCCCCCCCCC T ss_conf 7087777777787668 No 7 >1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244, PURS subunit (EC 6.3.5.3), structural genomics; 1.90A {Thermotoga maritima MSB8} SCOP: d.284.1.1 PDB: 3d54_B* Probab=2.71 E-value=3.6e+02 Score=11.61 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=17.3 Q ss_pred EEEEEEEEEE--EECCCCCCCCCCCC Q ss_conf 7788878999--84267883226402 Q gi|254780839|r 7 HFSVFKWSII--FDTGWNNPLGNGVK 30 (32) Q Consensus 7 hfsvfkwsii--fdtgwnnplgngvk 30 (32) |...|||.|. +-.|..+|-|..|+ T Consensus 12 ~m~~~k~~V~V~lK~gVlDPqG~aV~ 37 (94) T 1vq3_A 12 HLPLFKFAIDVQYRSNVRDPRGETIE 37 (94) T ss_dssp CCCEEEEEEEEEECTTSCCHHHHHHH T ss_pred CCEEEEEEEEEEECCCCCCHHHHHHH T ss_conf 52327999999978987184899999 No 8 >2qdr_A Uncharacterized protein; ZP_00345151.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme pcc 73102} Probab=2.59 E-value=3.7e+02 Score=11.57 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=8.0 Q ss_pred EEEEECCCCCCCC Q ss_conf 9998426788322 Q gi|254780839|r 14 SIIFDTGWNNPLG 26 (32) Q Consensus 14 siifdtgwnnplg 26 (32) -+.|++||..|-| T Consensus 95 ~V~f~~g~~~Ppg 107 (303) T 2qdr_A 95 RVVLPPKFEAPSG 107 (303) T ss_dssp EEEECTTCEECCB T ss_pred EEEECCCCCCCCC T ss_conf 9996788778996 No 9 >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Probab=2.35 E-value=3.9e+02 Score=11.44 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=0.0 Q ss_pred EEEECCCC Q ss_conf 99842678 Q gi|254780839|r 15 IIFDTGWN 22 (32) Q Consensus 15 iifdtgwn 22 (32) |+||.-|| T Consensus 198 I~~D~~wN 205 (328) T 3hgt_A 198 ICLDTTVD 205 (328) T ss_dssp EECSTTCC T ss_pred EEECCCCC T ss_conf 99589889 No 10 >1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1 Probab=2.32 E-value=4.2e+02 Score=11.30 Aligned_cols=10 Identities=60% Similarity=0.773 Sum_probs=0.0 Q ss_pred CCCCCCCCCC Q ss_conf 8322640259 Q gi|254780839|r 23 NPLGNGVKSK 32 (32) Q Consensus 23 nplgngvksk 32 (32) |||--||..| T Consensus 21 npl~vgvsak 30 (35) T 1qfq_B 21 NPLLVGVSAK 30 (35) T ss_dssp CGGGSSSSCC T ss_pred CCEEEEECCC T ss_conf 8616551256 Done!