Query gi|254780839|ref|YP_003065252.1| hypothetical protein CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 32 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 10:04:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780839.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1e0na_ b.72.1.1 (A:) Hypothet 8.4 63 0.0046 14.1 1.2 10 12-21 2-11 (27) 2 d1q88a_ e.47.1.1 (A:) 39 kda i 4.0 62 0.0045 14.1 -0.9 19 9-27 137-155 (192) 3 d1sqwa1 b.122.1.1 (A:95-170) N 3.1 1.4E+02 0.01 12.4 0.2 12 21-32 43-54 (76) 4 d2djfa1 b.61.5.1 (A:1-118) Dip 3.0 1.2E+02 0.0087 12.7 -0.2 14 12-25 59-72 (118) 5 d1emoa2 g.3.11.1 (A:2167-2205) 2.9 1.8E+02 0.013 11.9 0.6 10 21-30 6-15 (39) 6 d1vq3a_ d.284.1.1 (A:) PurS su 2.8 2E+02 0.015 11.7 0.7 24 7-30 4-29 (86) 7 d1pbyc_ a.137.9.1 (C:) Quinohe 2.2 2.5E+02 0.018 11.2 0.8 18 14-31 8-25 (79) 8 d1jmxg_ a.137.9.1 (G:) Quinohe 2.1 2.6E+02 0.019 11.2 0.8 15 17-31 9-23 (77) 9 d1adta3 g.51.1.1 (A:386-529) S 2.1 1.1E+02 0.0077 13.0 -1.5 9 6-14 112-120 (144) 10 d2bhma1 d.17.4.26 (A:97-235) T 1.8 2.7E+02 0.02 11.0 0.2 11 21-31 122-132 (139) No 1 >d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=8.43 E-value=63 Score=14.07 Aligned_cols=10 Identities=40% Similarity=0.980 Sum_probs=7.5 Q ss_pred EEEEEEECCC Q ss_conf 7899984267 Q gi|254780839|r 12 KWSIIFDTGW 21 (32) Q Consensus 12 kwsiifdtgw 21 (32) -|.||+..|- T Consensus 2 gweiihengr 11 (27) T d1e0na_ 2 GWEIIHENGR 11 (27) T ss_dssp CEEEEESSSS T ss_pred CCEEEECCCC T ss_conf 7166622893 No 2 >d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39, C-terminal domains {Trichomonas vaginalis [TaxId: 5722]} Probab=3.96 E-value=62 Score=14.08 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=14.4 Q ss_pred EEEEEEEEEECCCCCCCCC Q ss_conf 8887899984267883226 Q gi|254780839|r 9 SVFKWSIIFDTGWNNPLGN 27 (32) Q Consensus 9 svfkwsiifdtgwnnplgn 27 (32) -+|||+-.+-..||-|+-. T Consensus 137 ~i~k~~~G~~~vyN~P~v~ 155 (192) T d1q88a_ 137 LILKTPTGIRKIWNKPLIE 155 (192) T ss_dssp EEEECSSCEEEEEECTTSC T ss_pred EEEEECCCEEEEECCCCCC T ss_conf 9999669558871466547 No 3 >d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=3.09 E-value=1.4e+02 Score=12.40 Aligned_cols=12 Identities=50% Similarity=0.689 Sum_probs=8.4 Q ss_pred CCCCCCCCCCCC Q ss_conf 788322640259 Q gi|254780839|r 21 WNNPLGNGVKSK 32 (32) Q Consensus 21 wnnplgngvksk 32 (32) -+.|||-||..| T Consensus 43 ~D~PLGFGvaak 54 (76) T d1sqwa1 43 ADIPLGFGVAAK 54 (76) T ss_dssp TCCEEEEEEESS T ss_pred CCCCCCEEEECC T ss_conf 897523054104 No 4 >d2djfa1 b.61.5.1 (A:1-118) Dipeptidyl peptidase I (cathepsin C), exclusion domain {Human (Homo sapiens) [TaxId: 9606]} Probab=3.02 E-value=1.2e+02 Score=12.75 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=7.8 Q ss_pred EEEEEEECCCCCCC Q ss_conf 78999842678832 Q gi|254780839|r 12 KWSIIFDTGWNNPL 25 (32) Q Consensus 12 kwsiifdtgwnnpl 25 (32) .|.+|+|.|+.--+ T Consensus 59 ~WTmIYdqGfei~i 72 (118) T d2djfa1 59 HFTIIYNQGFEIVL 72 (118) T ss_dssp EEEEETTTEEEEEE T ss_pred EEEEEECCEEEEEE T ss_conf 89999425289998 No 5 >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.91 E-value=1.8e+02 Score=11.92 Aligned_cols=10 Identities=50% Similarity=0.730 Sum_probs=6.9 Q ss_pred CCCCCCCCCC Q ss_conf 7883226402 Q gi|254780839|r 21 WNNPLGNGVK 30 (32) Q Consensus 21 wnnplgngvk 30 (32) -+||-|||.- T Consensus 6 ignpCGnGTC 15 (39) T d1emoa2 6 VGNPCGNGTC 15 (39) T ss_dssp TTCSSSSSCE T ss_pred CCCCCCCCEE T ss_conf 0784578625 No 6 >d1vq3a_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Thermotoga maritima [TaxId: 2336]} Probab=2.79 E-value=2e+02 Score=11.69 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=16.8 Q ss_pred EEEEEEEEEE--EECCCCCCCCCCCC Q ss_conf 7788878999--84267883226402 Q gi|254780839|r 7 HFSVFKWSII--FDTGWNNPLGNGVK 30 (32) Q Consensus 7 hfsvfkwsii--fdtgwnnplgngvk 30 (32) |...|||.|. +-.|...|-|..++ T Consensus 4 ~m~~~k~~V~V~~K~gVlDPqG~av~ 29 (86) T d1vq3a_ 4 HLPLFKFAIDVQYRSNVRDPRGETIE 29 (86) T ss_dssp CCCEEEEEEEEEECTTSCCHHHHHHH T ss_pred CCCEEEEEEEEEECCCCCCCHHHHHH T ss_conf 57338999999989987271799999 No 7 >d1pbyc_ a.137.9.1 (C:) Quinohemoprotein amine dehydrogenase C chain {Paracoccus denitrificans [TaxId: 266]} Probab=2.19 E-value=2.5e+02 Score=11.21 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=11.9 Q ss_pred EEEEECCCCCCCCCCCCC Q ss_conf 999842678832264025 Q gi|254780839|r 14 SIIFDTGWNNPLGNGVKS 31 (32) Q Consensus 14 siifdtgwnnplgngvks 31 (32) +..||.||.---..||.| T Consensus 8 t~t~dPGWEvD~fGGva~ 25 (79) T d1pbyc_ 8 TTSFDPGWEVDAFGAVSN 25 (79) T ss_dssp CCCCSSBSSSBTTSSSTT T ss_pred ECCCCCCCEECCCCCHHH T ss_conf 213489814537766765 No 8 >d1jmxg_ a.137.9.1 (G:) Quinohemoprotein amine dehydrogenase C chain {Pseudomonas putida [TaxId: 303]} Probab=2.13 E-value=2.6e+02 Score=11.16 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=0.0 Q ss_pred EECCCCCCCCCCCCC Q ss_conf 842678832264025 Q gi|254780839|r 17 FDTGWNNPLGNGVKS 31 (32) Q Consensus 17 fdtgwnnplgngvks 31 (32) ||.||.---..||.| T Consensus 9 ~dPGWEvD~fGGva~ 23 (77) T d1jmxg_ 9 TDPGWEVDAFGGVSS 23 (77) T ss_dssp CSSCSSSCTTSSSSS T ss_pred CCCCCEECCCCCHHH T ss_conf 489814537766765 No 9 >d1adta3 g.51.1.1 (A:386-529) Second Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]} Probab=2.05 E-value=1.1e+02 Score=12.98 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=0.0 Q ss_pred EEEEEEEEE Q ss_conf 677888789 Q gi|254780839|r 6 LHFSVFKWS 14 (32) Q Consensus 6 lhfsvfkws 14 (32) +++..|||+ T Consensus 112 l~iPeFkW~ 120 (144) T d1adta3 112 MVVPQFKWS 120 (144) T ss_dssp CCCCBCCCC T ss_pred CCCCCEEEC T ss_conf 326415526 No 10 >d2bhma1 d.17.4.26 (A:97-235) Type IV secretion system protein VirB8 {Brucella melitensis [TaxId: 29459]} Probab=1.79 E-value=2.7e+02 Score=11.05 Aligned_cols=11 Identities=55% Similarity=0.752 Sum_probs=0.0 Q ss_pred CCCCCCCCCCC Q ss_conf 78832264025 Q gi|254780839|r 21 WNNPLGNGVKS 31 (32) Q Consensus 21 wnnplgngvks 31 (32) |.||||=-|.+ T Consensus 122 ~~NPlGF~Vt~ 132 (139) T d2bhma1 122 LTNPLGFNVTS 132 (139) T ss_dssp TTCTTCEEEEE T ss_pred HHCCCCEEEEE T ss_conf 65998539989 Done!