RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780839|ref|YP_003065252.1| hypothetical protein
CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62]
         (32 letters)



>gnl|CDD|131843 TIGR02796, tolQ, TolQ protein.  TolQ is one of the essential
          components of the Tol-Pal system. Together with TolR,
          it harnesses protonmotive force to energize TolA, which
          spans the periplasm to reach the complex of TolB and
          Pal at the outer member. The tol-pal system proves to
          be important for maintaining outer membrane integrity.
          Gene pairs similar to the TolQ and TolR gene pair often
          number several per genome, but this model describes
          specificially TolQ per se, as found in tol-pal operons.
          A close homolog, excluded from this model, is ExbB of
          the ExbB/ExbD/TonB protein complex, which powers
          transport of siderophores and vitamin B12 across the
          bacterial outer membrane. The Tol-Pal system is
          exploited by colicin and filamentous phage DNA to enter
          the cell. It is also implicated in pathogenesis in
          several bacterial species.
          Length = 215

 Score = 25.3 bits (56), Expect = 3.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 4  GLLHFSVFKWSIIFD 18
           LL  S+  W+IIF 
Sbjct: 19 ILLLASIISWAIIFQ 33


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.141    0.519 

Gapped
Lambda     K      H
   0.267   0.0762    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 520,426
Number of extensions: 12654
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 32
Length of database: 5,994,473
Length adjustment: 6
Effective length of query: 26
Effective length of database: 5,864,825
Effective search space: 152485450
Effective search space used: 152485450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)