Query gi|254780840|ref|YP_003065253.1| hypothetical protein CLIBASIA_03675 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 52 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 21:05:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780840.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1n08_A Putative riboflavin kin 10.9 49 0.0021 14.9 0.3 18 1-18 19-36 (163) 2 2cjg_A L-lysine-epsilon aminot 6.5 22 0.00091 16.8 -3.1 23 3-27 32-54 (449) 3 2gbo_A UPF0358 protein EF2458; 5.8 1.4E+02 0.0058 12.5 0.7 22 21-42 44-68 (104) 4 1mrz_A Riboflavin kinase/FMN a 5.0 1.2E+02 0.0052 12.7 0.0 18 1-18 155-172 (293) 5 2p0v_A Hypothetical protein BT 4.7 1.1E+02 0.0045 13.0 -0.4 14 4-17 380-393 (489) 6 3dxv_A Alpha-amino-epsilon-cap 4.7 27 0.0011 16.3 -3.5 12 12-23 42-53 (452) 7 2qee_A BH0493 protein; amidohy 4.4 98 0.0041 13.3 -0.9 20 25-52 357-378 (437) 8 2qtx_A Uncharacterized protein 4.2 1E+02 0.0044 13.1 -0.8 9 42-50 17-25 (71) 9 2nvp_A Hypothetical protein; a 4.1 1.2E+02 0.0052 12.7 -0.5 14 4-17 334-347 (435) 10 2hjq_A Hypothetical protein YQ 3.9 2.2E+02 0.0094 11.3 1.2 7 37-43 90-96 (111) No 1 >1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A* Probab=10.92 E-value=49 Score=14.87 Aligned_cols=18 Identities=44% Similarity=0.853 Sum_probs=14.2 Q ss_pred CCCCCEEEEEEHHHHHHH Q ss_conf 987742522102123788 Q gi|254780840|r 1 MTGYPFYFWGKISHGIGL 18 (52) Q Consensus 1 mtgypfyfwgkishgigl 18 (52) +.-||+.+-|++.||-++ T Consensus 19 ~~pyPy~i~G~Vv~G~~r 36 (163) T 1n08_A 19 QSPYPIRFEGKVVHGFGR 36 (163) T ss_dssp CTTCCEEEEEEEECCSSS T ss_pred CCCCCEEEEEEEEECCCC T ss_conf 999888989899618842 No 2 >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Probab=6.53 E-value=22 Score=16.79 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=13.2 Q ss_pred CCCEEEEEEHHHHHHHHHHHHHCCH Q ss_conf 7742522102123788999875416 Q gi|254780840|r 3 GYPFYFWGKISHGIGLFLWDVLDGR 27 (52) Q Consensus 3 gypfyfwgkishgiglflwdvldgr 27 (52) ||||.+ .|+++-|-+|||-.||+ T Consensus 32 ~~~~~i--~i~r~~G~yl~D~~dG~ 54 (449) T 2cjg_A 32 GLDIVL--DLTRSGGSYLVDAITGR 54 (449) T ss_dssp SCSSCB--CTTTCBBTEEEBTTTCC T ss_pred CCCCCE--EEEEEECCEEEECCCCC T ss_conf 886422--57850223999889998 No 3 >2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.23.6.1 Probab=5.82 E-value=1.4e+02 Score=12.46 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=16.2 Q ss_pred HHHHCCHHHHHHHHH---HHHHHHH Q ss_conf 987541699999999---9999999 Q gi|254780840|r 21 WDVLDGRVFQFYRVV---VRIALIF 42 (52) Q Consensus 21 wdvldgrvfqfyrvv---vrialif 42 (52) =+|+|-+.|-|-|-| ||+.||- T Consensus 44 EEVlDTQmfGlSrEVdFAvrlgli~ 68 (104) T 2gbo_A 44 EEVVDTQMYGFSRQVTYATRLGILT 68 (104) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999988731278888999967653 No 4 >1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel, nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Probab=4.98 E-value=1.2e+02 Score=12.71 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=12.6 Q ss_pred CCCCCEEEEEEHHHHHHH Q ss_conf 987742522102123788 Q gi|254780840|r 1 MTGYPFYFWGKISHGIGL 18 (52) Q Consensus 1 mtgypfyfwgkishgigl 18 (52) |-|+|+.+-|++.||-++ T Consensus 155 lLgr~y~i~G~Vv~G~~~ 172 (293) T 1mrz_A 155 YLGRYFEIEGIVHKDREF 172 (293) T ss_dssp HHSSCCEEEEEC------ T ss_pred HCCCCEEEEEEEECCCCC T ss_conf 358977999999767532 No 5 >2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8 Probab=4.73 E-value=1.1e+02 Score=13.04 Aligned_cols=14 Identities=43% Similarity=1.042 Sum_probs=7.5 Q ss_pred CCEEEEEEHHHHHH Q ss_conf 74252210212378 Q gi|254780840|r 4 YPFYFWGKISHGIG 17 (52) Q Consensus 4 ypfyfwgkishgig 17 (52) .|+||-|+.-+||| T Consensus 380 NPYy~~G~~~~GIG 393 (489) T 2p0v_A 380 NPYFFKGSAGEGIG 393 (489) T ss_dssp STTEEECSSCEEEC T ss_pred CCCEEECCCCCCCC T ss_conf 98514267534467 No 6 >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyridoxal phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Probab=4.68 E-value=27 Score=16.28 Aligned_cols=12 Identities=42% Similarity=0.396 Sum_probs=5.7 Q ss_pred HHHHHHHHHHHH Q ss_conf 212378899987 Q gi|254780840|r 12 ISHGIGLFLWDV 23 (52) Q Consensus 12 ishgiglflwdv 23 (52) |++|-|-++||+ T Consensus 42 i~~a~G~~l~D~ 53 (452) T 3dxv_A 42 ISGGRGARLIEE 53 (452) T ss_dssp EEEEEBTEEEET T ss_pred EEEEECCEEEEC T ss_conf 999564899979 No 7 >2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A* Probab=4.39 E-value=98 Score=13.26 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=0.0 Q ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHCCC Q ss_conf 41699999--99999999999878762279 Q gi|254780840|r 25 DGRVFQFY--RVVVRIALIFEYGRRFIGNI 52 (52) Q Consensus 25 dgrvfqfy--rvvvrialifeygrrfigni 52 (52) |.|+|-+| | +||.||.+.|+ T Consensus 357 DsR~~~s~~~r--------~e~fRriL~~v 378 (437) T 2qee_A 357 DARVLEQLIYK--------WHHSKSIIAEV 378 (437) T ss_dssp CCSBTTHHHHH--------HHHHHHHHHHH T ss_pred CCHHHHCCCHH--------HHHHHHHHHHH T ss_conf 51355112369--------99999999999 No 8 >2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii} Probab=4.18 E-value=1e+02 Score=13.10 Aligned_cols=9 Identities=67% Similarity=1.261 Sum_probs=0.0 Q ss_pred HHHHHHHHC Q ss_conf 998787622 Q gi|254780840|r 42 FEYGRRFIG 50 (52) Q Consensus 42 feygrrfig 50 (52) |||.||.-| T Consensus 17 feyarrl~g 25 (71) T 2qtx_A 17 FEYARRLNG 25 (71) T ss_dssp CCGGGGGTT T ss_pred HHHHHHCCC T ss_conf 688987079 No 9 >2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} SCOP: a.102.1.8 Probab=4.06 E-value=1.2e+02 Score=12.70 Aligned_cols=14 Identities=50% Similarity=0.961 Sum_probs=0.0 Q ss_pred CCEEEEEEHHHHHH Q ss_conf 74252210212378 Q gi|254780840|r 4 YPFYFWGKISHGIG 17 (52) Q Consensus 4 ypfyfwgkishgig 17 (52) .|+||-|+.-.||| T Consensus 334 NPyy~~G~~~~GIG 347 (435) T 2nvp_A 334 NRFFFEGKAAKGIG 347 (435) T ss_dssp STTEEECSSCEEEC T ss_pred CCCEEECCCCCCCC T ss_conf 98635466451036 No 10 >2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1 Probab=3.93 E-value=2.2e+02 Score=11.34 Aligned_cols=7 Identities=57% Similarity=0.871 Sum_probs=0.0 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780840|r 37 RIALIFE 43 (52) Q Consensus 37 rialife 43 (52) |||+|.| T Consensus 90 RIa~ILe 96 (111) T 2hjq_A 90 RIAYILK 96 (111) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 Done!