Query gi|254780840|ref|YP_003065253.1| hypothetical protein CLIBASIA_03675 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 52
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:26:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780840.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n08a_ b.43.5.1 (A:) Riboflav 13.0 22 0.0016 15.4 0.3 18 1-18 11-28 (154)
2 d2a5yb1 a.4.5.80 (B:386-543) C 4.8 1.1E+02 0.0077 11.8 0.8 19 10-28 69-87 (158)
3 d2ifxa1 d.58.4.19 (A:1-108) Hy 4.0 1.3E+02 0.0093 11.4 1.4 26 27-52 73-98 (108)
4 d2p0va1 a.102.1.8 (A:39-481) H 4.0 78 0.0057 12.5 -0.4 15 3-17 341-355 (443)
5 d1nb9a_ b.43.5.1 (A:) Riboflav 3.8 99 0.0072 12.0 0.0 15 4-18 3-17 (147)
6 d1mila_ d.93.1.1 (A:) Shc adap 3.4 1.2E+02 0.0089 11.5 0.2 12 3-15 6-17 (104)
7 d2nvpa1 a.102.1.8 (A:2-427) Hy 3.4 85 0.0062 12.3 -0.7 14 4-17 333-346 (426)
8 d1rpya_ d.93.1.1 (A:) Adaptor 3.3 88 0.0064 12.2 -0.6 14 2-16 3-16 (86)
9 d1cf5a_ d.165.1.1 (A:) Beta-mo 2.9 1.3E+02 0.0093 11.4 -0.2 8 9-16 190-197 (249)
10 d1ewsa_ g.9.1.1 (A:) Alpha-def 2.7 80 0.0058 12.5 -1.4 6 21-26 12-17 (32)
No 1
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=12.96 E-value=22 Score=15.43 Aligned_cols=18 Identities=44% Similarity=0.853 Sum_probs=14.1
Q ss_pred CCCCCEEEEEEHHHHHHH
Q ss_conf 987742522102123788
Q gi|254780840|r 1 MTGYPFYFWGKISHGIGL 18 (52)
Q Consensus 1 mtgypfyfwgkishgigl 18 (52)
|.-||+.+-|++.||-++
T Consensus 11 ~~PyPy~i~G~Vv~G~~~ 28 (154)
T d1n08a_ 11 QSPYPIRFEGKVVHGFGR 28 (154)
T ss_dssp CTTCCEEEEEEEECCSSS
T ss_pred CCCCCEEEEEEEEECCCC
T ss_conf 999888999999828955
No 2
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.82 E-value=1.1e+02 Score=11.79 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=15.9
Q ss_pred EEHHHHHHHHHHHHHCCHH
Q ss_conf 1021237889998754169
Q gi|254780840|r 10 GKISHGIGLFLWDVLDGRV 28 (52)
Q Consensus 10 gkishgiglflwdvldgrv 28 (52)
-||.|-|-+||-.|.|...
T Consensus 69 ~kidhiih~flkhvvd~qt 87 (158)
T d2a5yb1 69 FKIDHIIHMFLKHVVDAQT 87 (158)
T ss_dssp EECCHHHHHHHHTTSCTHH
T ss_pred EEHHHHHHHHHHHHHHHHH
T ss_conf 5257999999998745888
No 3
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=3.96 E-value=1.3e+02 Score=11.36 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 69999999999999999878762279
Q gi|254780840|r 27 RVFQFYRVVVRIALIFEYGRRFIGNI 52 (52)
Q Consensus 27 rvfqfyrvvvrialifeygrrfigni 52 (52)
.-+|-|-..---.--||-|..|||..
T Consensus 73 ~~y~~ym~sdirkawfehgk~figql 98 (108)
T d2ifxa1 73 AAYATYMASDIRKAWFEHGKTFIGQL 98 (108)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 99999999889999997260622202
No 4
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.95 E-value=78 Score=12.51 Aligned_cols=15 Identities=40% Similarity=0.975 Sum_probs=8.9
Q ss_pred CCCEEEEEEHHHHHH
Q ss_conf 774252210212378
Q gi|254780840|r 3 GYPFYFWGKISHGIG 17 (52)
Q Consensus 3 gypfyfwgkishgig 17 (52)
..|+||-|+.-+|||
T Consensus 341 ~NPyy~~G~~~~GIG 355 (443)
T d2p0va1 341 DNPYFFKGSAGEGIG 355 (443)
T ss_dssp TSTTEEECSSCEEEC
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 798611288764055
No 5
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.85 E-value=99 Score=11.96 Aligned_cols=15 Identities=27% Similarity=0.849 Sum_probs=11.2
Q ss_pred CCEEEEEEHHHHHHH
Q ss_conf 742522102123788
Q gi|254780840|r 4 YPFYFWGKISHGIGL 18 (52)
Q Consensus 4 ypfyfwgkishgigl 18 (52)
+|+.+-|++.||-|+
T Consensus 3 ~Py~i~G~Vv~G~~~ 17 (147)
T d1nb9a_ 3 LPYFCRGQVVRGFGR 17 (147)
T ss_dssp CSEEEEEECBCCSSS
T ss_pred CCEEEEEEEEECCCC
T ss_conf 888999999858954
No 6
>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.40 E-value=1.2e+02 Score=11.47 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=6.0
Q ss_pred CCCEEEEEEHHHH
Q ss_conf 7742522102123
Q gi|254780840|r 3 GYPFYFWGKISHG 15 (52)
Q Consensus 3 gypfyfwgkishg 15 (52)
..| +|||.|+..
T Consensus 6 ~~p-WyhG~i~R~ 17 (104)
T d1mila_ 6 GEP-WFHGKLSRR 17 (104)
T ss_dssp TCT-TBCSSCCHH
T ss_pred CCC-CCCCCCCHH
T ss_conf 398-747889999
No 7
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]}
Probab=3.37 E-value=85 Score=12.30 Aligned_cols=14 Identities=50% Similarity=0.961 Sum_probs=7.9
Q ss_pred CCEEEEEEHHHHHH
Q ss_conf 74252210212378
Q gi|254780840|r 4 YPFYFWGKISHGIG 17 (52)
Q Consensus 4 ypfyfwgkishgig 17 (52)
.|+||-|+.-.|||
T Consensus 333 NPyy~~G~~~~GiG 346 (426)
T d2nvpa1 333 NRFFFEGKAAKGIG 346 (426)
T ss_dssp STTEEECSSCEEEC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 86512277610055
No 8
>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.35 E-value=88 Score=12.23 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=7.2
Q ss_pred CCCCEEEEEEHHHHH
Q ss_conf 877425221021237
Q gi|254780840|r 2 TGYPFYFWGKISHGI 16 (52)
Q Consensus 2 tgypfyfwgkishgi 16 (52)
..+|+ |+|+||.-.
T Consensus 3 ~~~pW-yhg~isR~~ 16 (86)
T d1rpya_ 3 SDYPW-FHGTLSRVK 16 (86)
T ss_dssp GGSTT-BCTTCCHHH
T ss_pred CCCCC-CCCCCCHHH
T ss_conf 66863-178999999
No 9
>d1cf5a_ d.165.1.1 (A:) Beta-momorcharin {Bitter gourd (Momordica charantia) [TaxId: 3673]}
Probab=2.85 E-value=1.3e+02 Score=11.35 Aligned_cols=8 Identities=38% Similarity=0.949 Sum_probs=0.0
Q ss_pred EEEHHHHH
Q ss_conf 21021237
Q gi|254780840|r 9 WGKISHGI 16 (52)
Q Consensus 9 wgkishgi 16 (52)
||++|..|
T Consensus 190 W~~lS~aI 197 (249)
T d1cf5a_ 190 WSALSKQI 197 (249)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 10
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.75 E-value=80 Score=12.46 Aligned_cols=6 Identities=67% Similarity=1.907 Sum_probs=0.0
Q ss_pred HHHHCC
Q ss_conf 987541
Q gi|254780840|r 21 WDVLDG 26 (52)
Q Consensus 21 wdvldg 26 (52)
|+|.||
T Consensus 12 wevidg 17 (32)
T d1ewsa_ 12 WEVIDG 17 (32)
T ss_dssp TEEEEE
T ss_pred HHEECC
T ss_conf 536636
Done!