RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780840|ref|YP_003065253.1| hypothetical protein
CLIBASIA_03675 [Candidatus Liberibacter asiaticus str. psy62]
         (52 letters)



>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops,
           aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax}
           PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A*
           1kie_A* 1r4f_A* 3b9g_A* (A:)
          Length = 338

 Score = 24.4 bits (52), Expect = 5.8
 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 1   MTGYPFYFWGKISHGIGLFLWDVL------DGRVFQFYRVVVRIALIFEYGR 46
                      +  G G + WD L      D +V     V + + +  +   
Sbjct: 251 TMWAMCTHCELLRDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNE 302


>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase;
          HET: ANP; 2.9A {Pyrococcus abyssi GE5} (A:105-205)
          Length = 101

 Score = 23.5 bits (51), Expect = 9.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 12 ISHGIGLFLWDVLDGRVFQFYRVVVRIALIFEYG 45
          +   I  FL+DV + +  +   V  R+ +  EYG
Sbjct: 66 VKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYG 99


>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase,
          CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty
          acid biosynthesis; HET: B89; 2.30A {Saccharomyces
          cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A*
          1uys_A* 1uyt_A 1uyv_A (A:33-157,A:224-353)
          Length = 255

 Score = 23.4 bits (50), Expect = 9.7
 Identities = 4/30 (13%), Positives = 6/30 (20%)

Query: 20 LWDVLDGRVFQFYRVVVRIALIFEYGRRFI 49
           W      V       +   LI +      
Sbjct: 15 QWKNFSADVKLTDDFFISNELIEDENGELT 44


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.339    0.159    0.552 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 514,078
Number of extensions: 17619
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 6
Length of query: 52
Length of database: 4,956,049
Length adjustment: 23
Effective length of query: 29
Effective length of database: 4,178,534
Effective search space: 121177486
Effective search space used: 121177486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.4 bits)