Query gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs 127 out of 965
Neff 6.6
Searched_HMMs 39220
Date Mon May 30 02:31:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780841.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1183 PssA Phosphatidylserin 100.0 0 0 355.4 25.3 221 10-235 2-227 (234)
2 TIGR00473 pssA CDP-diacylglyce 100.0 1.4E-45 0 277.0 14.5 158 24-185 1-174 (174)
3 pfam01066 CDP-OH_P_transf CDP- 99.7 2.9E-15 7.5E-20 105.7 12.3 78 18-99 3-80 (96)
4 COG0558 PgsA Phosphatidylglyce 99.5 3.4E-12 8.7E-17 88.3 15.6 86 15-104 10-98 (192)
5 PRK10832 phosphatidylglyceroph 99.3 5.1E-10 1.3E-14 76.0 15.4 67 19-89 5-74 (182)
6 KOG1617 consensus 99.0 1.3E-09 3.3E-14 73.6 6.7 113 17-134 68-181 (243)
7 KOG2877 consensus 98.9 2.5E-08 6.4E-13 66.4 11.6 85 14-102 47-142 (389)
8 TIGR00560 pgsA CDP-diacylglyce 98.8 4.9E-08 1.3E-12 64.7 10.5 134 19-157 3-162 (217)
9 PTZ00307 ethanolamine phosphot 98.8 1.5E-06 3.8E-11 56.3 17.3 80 15-98 58-148 (417)
10 KOG3240 consensus 98.6 1.1E-07 2.8E-12 62.8 5.8 87 8-99 4-90 (218)
11 COG5050 EPT1 sn-1,2-diacylglyc 98.5 6.9E-05 1.8E-09 46.9 17.9 84 15-102 42-136 (384)
12 PRK03557 zinc transporter ZitB 71.9 7.1 0.00018 18.5 10.5 21 78-98 49-69 (312)
13 TIGR00927 2A1904 K+-dependent 51.3 17 0.00044 16.3 5.8 60 136-197 1141-1201(1226)
14 COG0053 MMT1 Predicted Co/Zn/C 46.7 21 0.00052 15.8 9.9 13 78-90 43-55 (304)
15 cd05142 Barstar Barstar is an 45.7 13 0.00033 17.0 1.8 33 63-99 19-52 (87)
16 cd00489 Barstar_like Barstar i 43.6 8.5 0.00022 18.0 0.6 34 62-99 17-51 (85)
17 KOG1307 consensus 41.2 25 0.00064 15.3 3.0 11 137-147 503-513 (588)
18 PRK09509 fieF ferrous iron eff 35.2 31 0.0008 14.8 11.1 39 50-92 17-55 (300)
19 pfam05653 DUF803 Protein of un 35.1 32 0.0008 14.8 4.1 19 80-98 61-79 (300)
20 pfam11947 DUF3464 Protein of u 35.0 32 0.00081 14.8 4.0 43 136-178 63-112 (149)
21 pfam01337 Barstar Barstar (bar 34.2 23 0.00058 15.6 1.5 25 62-90 17-41 (83)
22 pfam08009 CDP-OH_P_tran_2 CDP- 33.3 32 0.00081 14.8 2.2 30 201-230 9-38 (39)
23 cd05141 Barstar_evA4336-like B 31.4 30 0.00077 14.9 1.8 25 62-90 17-41 (81)
24 TIGR02992 ectoine_eutC ectoine 30.0 27 0.00068 15.2 1.3 25 127-151 64-92 (326)
25 cd05140 Barstar_AU1054-like Ba 27.4 26 0.00066 15.3 0.9 33 62-99 17-51 (86)
26 COG1219 ClpX ATP-dependent pro 26.9 32 0.00082 14.7 1.3 49 46-97 226-289 (408)
27 PRK05342 clpX ATP-dependent pr 23.7 32 0.00081 14.7 0.8 48 47-97 239-300 (411)
28 cd01093 CRIB_PAK_like PAK (p21 22.7 51 0.0013 13.6 1.7 18 133-150 20-37 (46)
29 PRK09292 Na(+)-translocating N 20.0 60 0.0015 13.2 3.7 45 1-46 1-45 (208)
No 1
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=100.00 E-value=0 Score=355.38 Aligned_cols=221 Identities=28% Similarity=0.385 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 00777999999999999999999999999849889999999999998312389999828743675326366755799999
Q gi|254780841|r 10 FSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLT 89 (246)
Q Consensus 10 ~~~~~~~~~~p~l~T~~~l~~G~~ai~~a~~g~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vs 89 (246)
.++.+.++++||++|++|++||++||.++.+++++.|.+++++|+++||+||++||++|++|++ |+|||||+|+||
T Consensus 2 ~~~~~~~~~~pn~iT~~~~~~G~~sI~~a~~~~~~~a~~~i~lA~i~DglDG~VAR~~~~~s~~----G~~lDSLaD~Vs 77 (234)
T COG1183 2 VPRIKRLYLLPNLITALGLFLGLLSIVAALEGRFEAALLLILLALILDGLDGRVARKLNAKSAF----GAELDSLADLVS 77 (234)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHH----HHHHHHHHHHHH
T ss_conf 7105568875259999999999999999971679999999999999806531998760786168----887757988988
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCEEEEECHHHHHHHHHHHHCCCH-HHHHHHHH
Q ss_conf 999999999997203468358999999999999999850355789--843230107899999999822322-59999999
Q gi|254780841|r 90 YVVLPAFALYQSNLLGNSTGSSVAAGMMVISSSIYYAYTNMKTEE--HFFSGFPAVWNMVVFSLIALNASV-LVSTIVIT 166 (246)
Q Consensus 90 FGvaPa~l~y~~~~~~~~~~~~~~~~~~~~~~alRLArfN~~~~~--~~F~GlP~pa~a~~~~~~~l~~~~-~~~~~~i~ 166 (246)
||||||+++|++...+ +..+|.++.+|++|+++||||||++++| +||+|+|+|||+.++..+.+..++ +.......
T Consensus 78 FgVaPA~l~y~~~~~~-~~~~~~~a~~~~~~~alRLArFN~~~~~~~~~F~GlPip~~a~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T COG1183 78 FGVAPALLLYSSGLNT-GPLGLLAALLYVLCGALRLARFNVKTNDDKNFFIGLPIPAAAVVVVLLVLLYHSLPTGLATVL 156 (234)
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 5067899999983247-768999999999999999997267104778852665357899999999999622312379999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987312787301110025689999999999999--9963223899999999999999999999
Q gi|254780841|r 167 TSVILTFVPVNFLHPIRVVRLRPLNFFVFVCWCLLGFYALI--SNFQVCRWFSFAFSVCGIYLYSIGAILQ 235 (246)
Q Consensus 167 ~~~~l~~~~i~~i~~~r~~~~k~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~yl~~~~~~~~ 235 (246)
....+.+++++|+|++|++++|+.+......+......++. ......+++..+......|+.+.+..++
T Consensus 157 ~~~~~~~l~~Lmvs~i~~~~~k~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 227 (234)
T COG1183 157 LSGILLLLSILMVSNIPFPSLKKLNALVRVVLLLAGILLLALLALVLILYPWLLLLVIASGYLLSIPIRVR 227 (234)
T ss_pred HHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988022664687665530000899999999999999985011599999999999999999998
No 2
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase; InterPro: IPR004533 This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding Escherichia coli protein.; GO: 0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0046341 CDP-diacylglycerol metabolic process, 0016020 membrane.
Probab=100.00 E-value=1.4e-45 Score=277.01 Aligned_cols=158 Identities=21% Similarity=0.301 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999984988-------9999999999998312389999828--74367532636675579999999999
Q gi|254780841|r 24 TAFGSFIAFLGVTAAAQYRI-------VDMFWWLGLALIIDGFDGPIARKMR--VKEVLPNWSGDTLDNIIDYLTYVVLP 94 (246)
Q Consensus 24 T~~~l~~G~~ai~~a~~g~~-------~~A~~~i~iA~i~D~lDG~iAR~~~--~~s~fp~~~G~~LDSLaD~vsFGvaP 94 (246)
|++|.++|++||...++++. +.|.+++..++++|++||++|||+| .+|+| |+|||||||.|||||||
T Consensus 1 t~lN~~~G~~aI~~~l~~~~~GkPhyv~~a~~li~ls~~~D~LDG~vARktnri~~S~f----G~ELDSLAD~vsFGVAP 76 (174)
T TIGR00473 1 TMLNIISGLLAILSLLRYTLRGKPHYVVEACLLILLSMIFDFLDGRVARKTNRITVSDF----GKELDSLADVVSFGVAP 76 (174)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCHHHHHHHHHHHHHH
T ss_conf 95779999999999862776677079999999999999841015678886356432556----64113477889988899
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHCCCCCCC---CEEEEECHHHHHHHHHHHHCC---CHHHHHHHHHH
Q ss_conf 999999720346835899999999-99999998503557898---432301078999999998223---22599999999
Q gi|254780841|r 95 AFALYQSNLLGNSTGSSVAAGMMV-ISSSIYYAYTNMKTEEH---FFSGFPAVWNMVVFSLIALNA---SVLVSTIVITT 167 (246)
Q Consensus 95 a~l~y~~~~~~~~~~~~~~~~~~~-~~~alRLArfN~~~~~~---~F~GlP~pa~a~~~~~~~l~~---~~~~~~~~i~~ 167 (246)
|.++|.....+.+..+..++..|. +||++||||||+.+.+. .|+|+|+|++|+.+....... +......-...
T Consensus 77 a~l~y~~~~y~f~~~~~~~~~~f~~lcG~lRLaRFNv~~~~~~~~~FiG~Pip~~al~~~~~~~ldnkyhfle~~~~~~~ 156 (174)
T TIGR00473 77 ALLAYSVALYNFEAILILVAALFVVLCGILRLARFNVLTVKLPKDSFIGLPIPVAALLLVSLVLLDNKYHFLEIYSELLA 156 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999988622246789999999999999988873333578997642675033458999999870772100222108999
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999999998731278730
Q gi|254780841|r 168 SVILTFVPVNFLHPIRVV 185 (246)
Q Consensus 168 ~~~l~~~~i~~i~~~r~~ 185 (246)
.......+.+|++.+|+|
T Consensus 157 a~~~~~l~~LMvs~I~yP 174 (174)
T TIGR00473 157 AIAAILLSVLMVSNIKYP 174 (174)
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 999999763100157899
No 3
>pfam01066 CDP-OH_P_transf CDP-alcohol phosphatidyltransferase. All of these members have the ability to catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=99.65 E-value=2.9e-15 Score=105.65 Aligned_cols=78 Identities=26% Similarity=0.299 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999984988999999999999831238999982874367532636675579999999999999
Q gi|254780841|r 18 FSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFA 97 (246)
Q Consensus 18 ~~p~l~T~~~l~~G~~ai~~a~~g~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGvaPa~l 97 (246)
..||.+|..++.+|..+.....++++..+.++..++.++|++||++||++|.+|++ |+++|+++|.++.+..+.-+
T Consensus 3 ~~pN~iT~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~DG~~AR~~~~~S~~----G~~lD~~~D~~~~~~~~~~l 78 (96)
T pfam01066 3 ITPNLITLLRLILGLLAALLLLLGQYLLAALLLLLAGLLDGLDGKLARRTGQSSPL----GALLDSVADRLSDVALLLGL 78 (96)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHH
T ss_conf 37789999999999999999990759999999999999995419999885998937----98985884699999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780841|r 98 LY 99 (246)
Q Consensus 98 ~y 99 (246)
.+
T Consensus 79 ~~ 80 (96)
T pfam01066 79 LL 80 (96)
T ss_pred HH
T ss_conf 99
No 4
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism]
Probab=99.49 E-value=3.4e-12 Score=88.29 Aligned_cols=86 Identities=20% Similarity=0.129 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999-99999999999849--88999999999999831238999982874367532636675579999999
Q gi|254780841|r 15 VSAFSVHILTAFG-SFIAFLGVTAAAQY--RIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYV 91 (246)
Q Consensus 15 ~~~~~p~l~T~~~-l~~G~~ai~~a~~g--~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFG 91 (246)
-+...||.+|... +..++.+.....++ ..-.+.++..++++.|++||.+||+.|.+|++ |+-||+++|-++-+
T Consensus 10 ~~~~~PN~lTl~r~~l~~~~~~~~~~~~~~~~~~~~~l~~~a~l~D~lDG~lAR~~~~~S~~----G~~LDp~~Dk~~~~ 85 (192)
T COG0558 10 KLGNTPNQLTLLRIFLIPLFALLLLLPGLGLLLLALVLFLLAALTDALDGYLARKWGQVSRF----GAFLDPVADKLLDA 85 (192)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCH----HHHHHHHHHHHHHH
T ss_conf 73169719999999999999999999856799999999999999986009999981898841----65743255799999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999997203
Q gi|254780841|r 92 VLPAFALYQSNLL 104 (246)
Q Consensus 92 vaPa~l~y~~~~~ 104 (246)
.++..+.+.....
T Consensus 86 ~~l~~l~~~~~~~ 98 (192)
T COG0558 86 ALLLGLVALGPVS 98 (192)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999980201
No 5
>PRK10832 phosphatidylglycerophosphate synthetase; Provisional
Probab=99.27 E-value=5.1e-10 Score=75.96 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999999999999-9984--9889999999999998312389999828743675326366755799999
Q gi|254780841|r 19 SVHILTAFGSFIAFLGVT-AAAQ--YRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLT 89 (246)
Q Consensus 19 ~p~l~T~~~l~~G~~ai~-~a~~--g~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vs 89 (246)
+||++|..-+++--.=+. .-.+ +..-.|.....+|++-|.+||.+||++|.+|++ |+-+|.+||-+-
T Consensus 5 iPN~LT~~Ri~lvP~~v~~~~~~~~~~~~~a~~lf~~a~iTD~lDG~lARk~n~~S~l----G~~lDPiADKll 74 (182)
T PRK10832 5 IPTLLTLFRVILIPFFVLVFYLPFTWAPFVCALIFCVAAVTDWFDGFLARRWNQSTRF----GAFLDPVADKVL 74 (182)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHH
T ss_conf 0289999999999999999997344189999999999999999979999876996850----336447888999
No 6
>KOG1617 consensus
Probab=98.98 E-value=1.3e-09 Score=73.62 Aligned_cols=113 Identities=24% Similarity=0.270 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998498899999999999983123899998287436753263667557999999999999
Q gi|254780841|r 17 AFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAF 96 (246)
Q Consensus 17 ~~~p~l~T~~~l~~G~~ai~~a~~g~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGvaPa~ 96 (246)
.=+||++|.+-+.++=+--.+.++++|..|+-....|.+-|.+||.+||+++..|.+ |.-||-+||.+--+..--.
T Consensus 68 ~tiPN~Ltl~Ri~a~Pli~~lii~~~~t~A~~~Fa~Ag~TD~lDGyIARk~~l~S~~----Gs~LDPlADkvlit~~~l~ 143 (243)
T KOG1617 68 LTIPNMLTLARIAATPLIGYLIIDENFTAAFGLFAVAGITDLLDGYIARKMRLGSIA----GSVLDPLADKVLITCLTLC 143 (243)
T ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----HHCCCHHHHHHHHHHHHHH
T ss_conf 126327888787430604677751334099999999876887778888631334034----4302748888999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHCCCCCC
Q ss_conf 9999720346835899999999-9999999850355789
Q gi|254780841|r 97 ALYQSNLLGNSTGSSVAAGMMV-ISSSIYYAYTNMKTEE 134 (246)
Q Consensus 97 l~y~~~~~~~~~~~~~~~~~~~-~~~alRLArfN~~~~~ 134 (246)
+.| .++.+.+..+.++.==.+ +.++..++--|.+...
T Consensus 144 m~~-~~liPvpL~~~IIgRDV~Lv~~~~y~ry~~l~~p~ 181 (243)
T KOG1617 144 MVY-ADLIPVPLASIIIGRDVLLVAGAFYLRYQNLKLPY 181 (243)
T ss_pred HHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 876-30257403455555678999999999986278750
No 7
>KOG2877 consensus
Probab=98.93 E-value=2.5e-08 Score=66.37 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC------C-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 7999999999999999999999999849------8-----8999999999999831238999982874367532636675
Q gi|254780841|r 14 RVSAFSVHILTAFGSFIAFLGVTAAAQY------R-----IVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLD 82 (246)
Q Consensus 14 ~~~~~~p~l~T~~~l~~G~~ai~~a~~g------~-----~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LD 82 (246)
=...++||++|..|+.+=........-- + +-.+++.+.+..=+|+.||+=||++|++|+. |+.+|
T Consensus 47 ~P~wmAPNlITL~Gl~~~v~~~Ll~~~ydP~~~~~~P~W~y~a~alglFlYqTlDaiDGkQARRTnsSsPL----GELFD 122 (389)
T KOG2877 47 FPLWMAPNLITLIGLIFNVITVLLLLYYDPNLDEPAPRWTYFAAALGLFLYQTLDAIDGKQARRTNSSSPL----GELFD 122 (389)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC----HHHHC
T ss_conf 62502850899998999999999998418656899874799999999999873035564664007899973----76651
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 57999999999999999972
Q gi|254780841|r 83 NIIDYLTYVVLPAFALYQSN 102 (246)
Q Consensus 83 SLaD~vsFGvaPa~l~y~~~ 102 (246)
-=.|-+|-...--...+..+
T Consensus 123 HG~DS~stvf~~l~~~s~~~ 142 (389)
T KOG2877 123 HGCDSISTVFVTLAVCSAFG 142 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 35105788999999999967
No 8
>TIGR00560 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; InterPro: IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (2.7.8.5 from EC), also known as phosphatidylglycerophosphate synthase, glycerophosphate phosphatidyltransferase and PGP synthase, catalyses the conversion ofCDP-diacylglycerol and glycerol-3-phosphate to CMP and 3-(3-phosphatidyl)-glycerol 1-phosphate in the commited step to the synthesis of acidic phospholipids. It is an integral membrane protein. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharomyces cerevisiae (Baker's yeast) YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.; GO: 0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0016021 integral to membrane.
Probab=98.84 E-value=4.9e-08 Score=64.70 Aligned_cols=134 Identities=19% Similarity=0.109 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 9999999999999999999984--------------------98899999999999983123899998287436753263
Q gi|254780841|r 19 SVHILTAFGSFIAFLGVTAAAQ--------------------YRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSG 78 (246)
Q Consensus 19 ~p~l~T~~~l~~G~~ai~~a~~--------------------g~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G 78 (246)
+||.+|..=++..+-=+....- ...-......++|.+=|.+||.+|||+|..|+| |
T Consensus 3 ~Pn~lT~~Ri~~~~p~~~l~~l~~~~~~~~~~~vG~~~~~~~~~~~~~~~lF~~A~~TDwlDGYlARk~~~vs~f----G 78 (217)
T TIGR00560 3 IPNWLTLFRIFILLPLFILIFLENLLGVLAEFGVGAVVLPIQVSLFIGGLLFLIAAVTDWLDGYLARKWNLVSNF----G 78 (217)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----H
T ss_conf 607999999999999999996320021100222130002387998999999999979877789999996021212----3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCC-CCCEEEEE-CHHHHHHHHH--H
Q ss_conf 667557999999999-9999999720346835899999999999999985035-578-98432301-0789999999--9
Q gi|254780841|r 79 DTLDNIIDYLTYVVL-PAFALYQSNLLGNSTGSSVAAGMMVISSSIYYAYTNM-KTE-EHFFSGFP-AVWNMVVFSL--I 152 (246)
Q Consensus 79 ~~LDSLaD~vsFGva-Pa~l~y~~~~~~~~~~~~~~~~~~~~~~alRLArfN~-~~~-~~~F~GlP-~pa~a~~~~~--~ 152 (246)
+-+|.+||-+==--| +=+....++..+......+..==+.+ +++|.---+. +.. .-.+-|-= |.+.++.+.. +
T Consensus 79 k~lDPlADK~lv~~a~~Li~l~~~~~~~~~~~~vii~RE~~i-~glR~~~~~~~~~~~~aN~lGK~KT~~Q~vAi~~SlL 157 (217)
T TIGR00560 79 KFLDPLADKVLVLAALVLIILVYHGYVPAWFVIVIIARELVI-SGLRVLAAEKGKEVIAANWLGKWKTVAQMVAIAASLL 157 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 464028769999999999999998799999999999999999-9999999980882010302007999999999999998
Q ss_pred HHCCC
Q ss_conf 82232
Q gi|254780841|r 153 ALNAS 157 (246)
Q Consensus 153 ~l~~~ 157 (246)
....+
T Consensus 158 l~~~~ 162 (217)
T TIGR00560 158 LWSLN 162 (217)
T ss_pred HCCCC
T ss_conf 31543
No 9
>PTZ00307 ethanolamine phosphotransferase; Provisional
Probab=98.81 E-value=1.5e-06 Score=56.29 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---------C--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 999999999999999999999999849---------8--89999999999998312389999828743675326366755
Q gi|254780841|r 15 VSAFSVHILTAFGSFIAFLGVTAAAQY---------R--IVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDN 83 (246)
Q Consensus 15 ~~~~~p~l~T~~~l~~G~~ai~~a~~g---------~--~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDS 83 (246)
.+..+||++|..|..+...+.....-. + +-.+++.+.+..-+|++||+=||++|++|.. |+.+|-
T Consensus 58 P~w~APN~iTl~G~~~~~~~~~~~~~~~~~~~~~~P~W~~~~~a~~lf~YqtlD~~DGkqARRTg~sspL----GeLFDH 133 (417)
T PTZ00307 58 PMTVAPNCITFTGFLIGMSSAALLLYFYFFEEGVYPSWVLYYAAFALFAYQTLDAIDGKQARRTGTGSPL----GELFDH 133 (417)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCC----HHHHHC
T ss_conf 6855727999999999999999987526444578974699999999999986431142878635788971----776624
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 799999999999999
Q gi|254780841|r 84 IIDYLTYVVLPAFAL 98 (246)
Q Consensus 84 LaD~vsFGvaPa~l~ 98 (246)
=.|-++-+.......
T Consensus 134 G~Ds~~~~~~~~~~~ 148 (417)
T PTZ00307 134 GCDAFLTPFVLLNVS 148 (417)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 502788899999999
No 10
>KOG3240 consensus
Probab=98.58 E-value=1.1e-07 Score=62.75 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 11007779999999999999999999999998498899999999999983123899998287436753263667557999
Q gi|254780841|r 8 KNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDY 87 (246)
Q Consensus 8 ~~~~~~~~~~~~p~l~T~~~l~~G~~ai~~a~~g~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~ 87 (246)
|+.+.....-+.||+.--.-++...+|.... ..+...+.++-..+..+|++||+.||++|..|.| |+-||-+.|-
T Consensus 4 ~~~~~~~v~~~iPN~iGY~RI~laiisf~vm-~~~p~~~~~lY~~S~lLDAfDG~aAR~~NQ~S~f----GA~LDmvTDR 78 (218)
T KOG3240 4 KKPMKESVFLYIPNLIGYMRIVLAILSFYVM-SSNPTTFSVLYLLSSLLDAFDGWAARKLNQVSRF----GAMLDMVTDR 78 (218)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_conf 7778876489844056499999999999995-2693389999999877876527999987204258----8999999877
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780841|r 88 LTYVVLPAFALY 99 (246)
Q Consensus 88 vsFGvaPa~l~y 99 (246)
.|=...=..+..
T Consensus 79 ~st~~LL~~L~~ 90 (218)
T KOG3240 79 CSTACLLVFLCQ 90 (218)
T ss_pred HHHHHHHHHHHH
T ss_conf 626999999999
No 11
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=98.48 E-value=6.9e-05 Score=46.86 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC---------HHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9999999999999999999999998498---------899--99999999998312389999828743675326366755
Q gi|254780841|r 15 VSAFSVHILTAFGSFIAFLGVTAAAQYR---------IVD--MFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDN 83 (246)
Q Consensus 15 ~~~~~p~l~T~~~l~~G~~ai~~a~~g~---------~~~--A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDS 83 (246)
.....||++|..|+++=...+...+..| |-. -++.+.+=..+|++||+=||++|++|.. |+.+|-
T Consensus 42 P~~mAPNliTL~Gl~fiv~nvlt~l~ydp~~~~~~~~w~yfs~alg~FlYqtfD~lDG~qARRTGt~spL----GeLFDH 117 (384)
T COG5050 42 PYWMAPNLITLCGLIFIVANVLTTLYYDPCLSVDGPRWTYFSYALGLFLYQTFDALDGRQARRTGTGSPL----GELFDH 117 (384)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC----HHHHHH
T ss_conf 1013833999987999999999999505224778624589999999998863355564765217899971----888751
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999972
Q gi|254780841|r 84 IIDYLTYVVLPAFALYQSN 102 (246)
Q Consensus 84 LaD~vsFGvaPa~l~y~~~ 102 (246)
=.|-++=+..--++.-..+
T Consensus 118 ~vDsint~l~~i~~~s~~g 136 (384)
T COG5050 118 GVDSINTTLSAIIFVSAFG 136 (384)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 2888887899999999966
No 12
>PRK03557 zinc transporter ZitB; Provisional
Probab=71.88 E-value=7.1 Score=18.45 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 366755799999999999999
Q gi|254780841|r 78 GDTLDNIIDYLTYVVLPAFAL 98 (246)
Q Consensus 78 G~~LDSLaD~vsFGvaPa~l~ 98 (246)
.--+++++|.++.+++-.-+-
T Consensus 49 aDa~H~l~D~~~~~i~l~a~~ 69 (312)
T PRK03557 49 ADAGHMLTDAAALLFALLAVQ 69 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999989999999999999
No 13
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger; InterPro: IPR004817 This family represents the K+-dependent Na+/Ca+ exchanger 1 proteins. They are critical components of the visual transduction cascade, and control the calcium concentration of outer segments during light and darkness. Light causes a rapid lowering of cytosolic free calcium caused by extrusion via this protein, which plays a key role in light adaptation. It is an integral membrane protein which transports one calcium and one potassium ion in exchange for four sodium ions.; GO: 0008273 calcium potassium:sodium antiporter activity, 0006816 calcium ion transport, 0007601 visual perception, 0016021 integral to membrane.
Probab=51.26 E-value=17 Score=16.25 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=27.3
Q ss_pred CEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHH
Q ss_conf 4323010789999999982232259999999999999999873-1278730111002568999
Q gi|254780841|r 136 FFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNF-LHPIRVVRLRPLNFFVFVC 197 (246)
Q Consensus 136 ~F~GlP~pa~a~~~~~~~l~~~~~~~~~~i~~~~~l~~~~i~~-i~~~r~~~~k~~~~~~~~~ 197 (246)
--+|+|.||-..-+.- .+++-+.-...+ ++..++.|+.+++ ++.+...+||..++.....
T Consensus 1141 itvGlP~PW~lfslin-~lqP~~vssnGl-fCaivllflmllfvi~sia~CkWrmnkilGftm 1201 (1226)
T TIGR00927 1141 ITVGLPVPWLLFSLIN-GLQPVPVSSNGL-FCAIVLLFLMLLFVISSIASCKWRMNKILGFTM 1201 (1226)
T ss_pred EEECCCHHHHHHHHHH-CCCCCEECCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2204545789999984-257530012227-899999999999999988765677888888999
No 14
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=46.66 E-value=21 Score=15.83 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3667557999999
Q gi|254780841|r 78 GDTLDNIIDYLTY 90 (246)
Q Consensus 78 G~~LDSLaD~vsF 90 (246)
-.-++|++|.++=
T Consensus 43 ADaihs~~D~~~s 55 (304)
T COG0053 43 ADAIHSLSDIVAS 55 (304)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999889999999
No 15
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=45.71 E-value=13 Score=16.97 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=21.1
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9998287436753263667557999999-999999999
Q gi|254780841|r 63 IARKMRVKEVLPNWSGDTLDNIIDYLTY-VVLPAFALY 99 (246)
Q Consensus 63 iAR~~~~~s~fp~~~G~~LDSLaD~vsF-GvaPa~l~y 99 (246)
+++.++- |...|..||.|=|.+|= .-.|..+.+
T Consensus 19 l~~~~~l----p~~yG~NlDALWD~ltg~v~lP~~i~f 52 (87)
T cd05142 19 LKKELAL----PEYYGENLDALWDCLTGWVELPLTIEW 52 (87)
T ss_pred HHHHCCC----CHHHCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 9998399----435347899999998478888749998
No 16
>cd00489 Barstar_like Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it, thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=43.56 E-value=8.5 Score=18.00 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=24.0
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 9999828743675326366755799999999-9999999
Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTYVV-LPAFALY 99 (246)
Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv-aPa~l~y 99 (246)
.+|+.++ ||..+|..+|-+.|.+|=.+ .|..+.+
T Consensus 17 ~~~~~l~----fP~~yG~N~DAl~D~lt~~~~~P~~l~~ 51 (85)
T cd00489 17 RLKKKLG----FPDYYGHNLDALWDCLTGLVEEPLVLRW 51 (85)
T ss_pred HHHHHCC----CCHHHCCCHHHHHHHHCCCCCCCCEEEE
T ss_conf 9999829----9715326489999986366569977887
No 17
>KOG1307 consensus
Probab=41.24 E-value=25 Score=15.34 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=5.7
Q ss_pred EEEEECHHHHH
Q ss_conf 32301078999
Q gi|254780841|r 137 FSGFPAVWNMV 147 (246)
Q Consensus 137 F~GlP~pa~a~ 147 (246)
-+|+|.||-.-
T Consensus 503 ~VGLplPWLL~ 513 (588)
T KOG1307 503 LVGLPLPWLLY 513 (588)
T ss_pred EECCCCHHHHH
T ss_conf 32688089999
No 18
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=35.18 E-value=31 Score=14.78 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999998312389999828743675326366755799999999
Q gi|254780841|r 50 LGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVV 92 (246)
Q Consensus 50 i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv 92 (246)
+.+..++=.+-....-..|+.+-. .--.||++|.++-.+
T Consensus 17 i~~n~~L~i~K~~~g~~sgS~All----ADa~hSl~D~~s~~~ 55 (300)
T PRK09509 17 TAMASLLLLIKIFAWWYTGSVSIL----AALVDSLVDIAASLT 55 (300)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHH
T ss_conf 999999999999999994509999----989999999999999
No 19
>pfam05653 DUF803 Protein of unknown function (DUF803). This family consists of several eukaryotic proteins of unknown function.
Probab=35.12 E-value=32 Score=14.78 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 6755799999999999999
Q gi|254780841|r 80 TLDNIIDYLTYVVLPAFAL 98 (246)
Q Consensus 80 ~LDSLaD~vsFGvaPa~l~ 98 (246)
-+.+++|+++||.||+.++
T Consensus 61 ~~Gei~nF~Ay~FAPasLV 79 (300)
T pfam05653 61 IVGEAANFAAYAFAPATLV 79 (300)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9866888999983179988
No 20
>pfam11947 DUF3464 Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=35.00 E-value=32 Score=14.77 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=31.5
Q ss_pred CEEEEECHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4323010789999999982-------232259999999999999999873
Q gi|254780841|r 136 FFSGFPAVWNMVVFSLIAL-------NASVLVSTIVITTSVILTFVPVNF 178 (246)
Q Consensus 136 ~F~GlP~pa~a~~~~~~~l-------~~~~~~~~~~i~~~~~l~~~~i~~ 178 (246)
.|.|+|+-.+..++..+.+ ..+.|........+..+.++.+.|
T Consensus 63 ~~~GiP~~lg~~~f~~~y~l~~~~~~d~p~~~~~~~s~~~Fg~gllGisY 112 (149)
T pfam11947 63 FFSGIPTALGMAVFVVSYLLVSRGIIDVPPWVTLLVSLGFFGLGLLGLSY 112 (149)
T ss_pred HHHCCHHHHHHHHHHHHHHEEECCEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98171588899998777610264436447069999999999998865612
No 21
>pfam01337 Barstar Barstar (barnase inhibitor).
Probab=34.17 E-value=23 Score=15.58 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=18.6
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99998287436753263667557999999
Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTY 90 (246)
Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsF 90 (246)
.++++++ ||..+|..+|.+.|.+|=
T Consensus 17 ~~~~~l~----fP~~fG~N~DAl~D~lt~ 41 (83)
T pfam01337 17 ALAKAFG----FPDYFGKNLDALWDCLTD 41 (83)
T ss_pred HHHHHHC----CCHHHCCCHHHHHHHHCC
T ss_conf 9999919----946745687999999757
No 22
>pfam08009 CDP-OH_P_tran_2 CDP-alcohol phosphatidyltransferase 2. This domain is found on CDP-alcohol phosphatidyltransferases. These enzymes catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=33.31 E-value=32 Score=14.77 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999632238999999999999999
Q gi|254780841|r 201 LGFYALISNFQVCRWFSFAFSVCGIYLYSI 230 (246)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~yl~~~ 230 (246)
+..+.....+...++|..+-.+...|+.++
T Consensus 9 ~~~v~v~ia~lI~~PW~tLs~~~v~Yl~sl 38 (39)
T pfam08009 9 IVLVVVFIALLITYPWLTLSVLGVLYLLSL 38 (39)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999725899999999975038
No 23
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=31.36 E-value=30 Score=14.88 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=18.3
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99998287436753263667557999999
Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTY 90 (246)
Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsF 90 (246)
.+|+.++ ||..+|...|.|.|.++=
T Consensus 17 ~~a~~l~----fP~~fG~N~DAl~D~l~D 41 (81)
T cd05141 17 ALAAALD----FPSWFGHNWDALADCLTD 41 (81)
T ss_pred HHHHHCC----CCHHHCCCHHHHHHHHCC
T ss_conf 9999818----952316657999998618
No 24
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=30.01 E-value=27 Score=15.17 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHCCCCCCCCEE----EEECHHHHHHHHH
Q ss_conf 503557898432----3010789999999
Q gi|254780841|r 127 YTNMKTEEHFFS----GFPAVWNMVVFSL 151 (246)
Q Consensus 127 rfN~~~~~~~F~----GlP~pa~a~~~~~ 151 (246)
.|-+|...+||. ||||..+++++.+
T Consensus 64 ~FAiK~SPGFFdNPklGLPS~nGlM~llS 92 (326)
T TIGR02992 64 GFAIKVSPGFFDNPKLGLPSLNGLMVLLS 92 (326)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 65155257723778878751346887785
No 25
>cd05140 Barstar_AU1054-like Barstar_AU1054-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor AU1054 found in Burkholderia cenocepacia. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=27.41 E-value=26 Score=15.27 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=22.8
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 9999828743675326366755799999999--9999999
Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTYVV--LPAFALY 99 (246)
Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv--aPa~l~y 99 (246)
.+++.++ ||...|..+|-+.|.+| |. .|-.+.+
T Consensus 17 ~lk~~L~----fP~~YG~NwDAlwD~lt-~lv~~P~~l~~ 51 (86)
T cd05140 17 LLKECLG----FPGWYGCNWDAFWDAIT-GLVSMPPVLRF 51 (86)
T ss_pred HHHHHCC----CCHHHHCCHHHHHHHHH-CCCCCCCEEEE
T ss_conf 9998849----96576315999999982-55237977787
No 26
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.93 E-value=32 Score=14.72 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH----------HHHH-----HHHHHHHHHHHH
Q ss_conf 999999999983123899998287436753263667----------5579-----999999999999
Q gi|254780841|r 46 MFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTL----------DNII-----DYLTYVVLPAFA 97 (246)
Q Consensus 46 A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~L----------DSLa-----D~vsFGvaPa~l 97 (246)
.=++-+.+..|||+|.-+.++++.++-= +|++- +-+. |.+.||..|-++
T Consensus 226 ~NILFIcgGAF~GlekiI~~R~~~~~iG---F~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfI 289 (408)
T COG1219 226 SNILFICGGAFAGLEKIIKKRLGKKGIG---FGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFI 289 (408)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf 6346782440103999999862687424---566445344441288998754868788708838872
No 27
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=23.65 E-value=32 Score=14.74 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH--------------HHHHHHHHHHHHHHH
Q ss_conf 999999999831238999982874367532636675--------------579999999999999
Q gi|254780841|r 47 FWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLD--------------NIIDYLTYVVLPAFA 97 (246)
Q Consensus 47 ~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LD--------------SLaD~vsFGvaPa~l 97 (246)
=++-+.+.-|+|+|--++|+++.++- -||++.. .-.|++.||+.|-++
T Consensus 239 nILFI~gGAF~GL~~II~~R~~~~~i---GF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfi 300 (411)
T PRK05342 239 NILFICGGAFDGLEKIIKQRLGKSGI---GFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFI 300 (411)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCCC---CCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf 17999115533589999863578876---778876641100056787627987888738837761
No 28
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=22.70 E-value=51 Score=13.61 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=13.9
Q ss_pred CCCCEEEEECHHHHHHHH
Q ss_conf 898432301078999999
Q gi|254780841|r 133 EEHFFSGFPAVWNMVVFS 150 (246)
Q Consensus 133 ~~~~F~GlP~pa~a~~~~ 150 (246)
+.+-|.|+|-.|..++-.
T Consensus 20 ~tG~f~GlP~eW~~lL~~ 37 (46)
T cd01093 20 QTGEFTGLPEEWQRLLKS 37 (46)
T ss_pred CCCCEECCCHHHHHHHHH
T ss_conf 898470699999999986
No 29
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=20.01 E-value=60 Score=13.17 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9641222110077799999999999999999999999984988999
Q gi|254780841|r 1 MIGKMNYKNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDM 46 (246)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~p~l~T~~~l~~G~~ai~~a~~g~~~~A 46 (246)
|..++++|+...+.+.-==|-+.-..|+| -++|+....+.-..+.
T Consensus 1 m~~~~~~~~i~~~gl~~nNpvlvq~LGlC-p~LAVT~~~~nalgmg 45 (208)
T PRK09292 1 MADSKSLKEVLLGPLFDNNPIALQVLGIC-SALAVTTKLETALVMT 45 (208)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHCHHHHHHHH
T ss_conf 99827899999987987469999999667-3777663439899999
Done!