Query gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 246 No_of_seqs 127 out of 965 Neff 6.6 Searched_HMMs 33803 Date Wed Jun 1 19:02:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780841.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2cx6_A Hypothetical protein Y 47.8 13 0.00039 16.6 2.4 29 62-94 20-48 (90) 2 >2za4_B Barstar; protein-prote 40.7 19 0.00056 15.6 2.3 33 62-98 20-53 (90) 3 >2odb_B Serine/threonine-prote 30.5 24 0.00072 15.0 1.5 17 132-148 18-34 (35) 4 >2qme_I CRIB domain of the ser 25.3 23 0.00069 15.2 0.7 17 132-148 18-34 (36) 5 >2ov2_I Serine/threonine-prote 20.7 35 0.001 14.2 0.8 16 132-147 18-33 (35) 6 >1f3m_A Serine/threonine-prote 18.0 58 0.0017 12.9 1.5 18 132-149 22-39 (46) 7 >2c5q_A RRAA-like protein YER0 12.7 81 0.0024 12.1 2.4 38 55-99 12-49 (79) 8 >2vgl_A Adaptor protein comple 11.4 84 0.0025 12.0 0.8 21 132-152 24-44 (102) 9 >3h90_A Ferrous-iron efflux pu 10.5 96 0.0028 11.7 3.7 36 60-99 20-55 (202) 10 >2cb5_A Protein (bleomycin hyd 9.6 45 0.0013 13.5 -1.1 38 58-98 32-70 (132) No 1 >>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics, NPPSFA; 2.43A {Escherichia coli O157} (A:) Probab=47.76 E-value=13 Score=16.58 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=21.1 Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999982874367532636675579999999999 Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLP 94 (246) Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGvaP 94 (246) .+|+.++- |..+|..+|.|.|.++=+..| T Consensus 20 ~la~~l~f----P~yfG~NlDAl~DcL~d~~~~ 48 (90) T 2cx6_A 20 DFSQTFGL----AKDKVRDLDSLWDVLXNDVLP 48 (90) T ss_dssp HHHHHTTC----CTTSCSSHHHHHHHHHTTCSC T ss_pred HHHHHCCC----CHHHCCCHHHHHHHHCCCCCC T ss_conf 99998199----614246889999997477767 No 2 >>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A* (B:) Probab=40.74 E-value=19 Score=15.65 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=22.5 Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHH Q ss_conf 9999828743675326366755799999999-999999 Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTYVV-LPAFAL 98 (246) Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv-aPa~l~ 98 (246) .+|+.++--+.| |..+|-|.|.++=+. .|-.++ T Consensus 20 ~~~~~l~fP~yf----G~NlDAl~D~L~d~~~~p~~i~ 53 (90) T 2za4_B 20 TLKKELALPEYY----GENLDALWAALTGWVEYPLVLE 53 (90) T ss_dssp HHHHHTTCCTTC----CCSHHHHHHHHHHTCCSSEEEE T ss_pred HHHHHCCCCCCC----CCCHHHHHHHHCCCCCCCEEEE T ss_conf 999981998100----7868899999738888983999 No 3 >>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structural genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} (B:) Probab=30.49 E-value=24 Score=15.04 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=13.2 Q ss_pred CCCCCEEEEECHHHHHH Q ss_conf 78984323010789999 Q gi|254780841|r 132 TEEHFFSGFPAVWNMVV 148 (246) Q Consensus 132 ~~~~~F~GlP~pa~a~~ 148 (246) .+.+.|.|+|-.|.-++ T Consensus 18 ~~tG~f~GLP~~W~~ll 34 (35) T 2odb_B 18 PKEGKFVGLPPQWQNIL 34 (35) T ss_dssp TTTTEEESCCHHHHHHH T ss_pred CCCCEEECCCHHHHHHH T ss_conf 99880834999999974 No 4 >>2qme_I CRIB domain of the serine/threonine-protein kinase PAK 1; GTPase RAC3, small GTP binding protein, P21 RAC; HET: GCP; 1.75A {Homo sapiens} (I:) Probab=25.29 E-value=23 Score=15.16 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=13.1 Q ss_pred CCCCCEEEEECHHHHHH Q ss_conf 78984323010789999 Q gi|254780841|r 132 TEEHFFSGFPAVWNMVV 148 (246) Q Consensus 132 ~~~~~F~GlP~pa~a~~ 148 (246) .+.+.|.|+|..|..++ T Consensus 18 ~~tG~f~GLP~~W~~ll 34 (36) T 2qme_I 18 AVTGEFTGMPEQWARLL 34 (36) T ss_dssp TTTTBCC---------- T ss_pred CCCCEEECCCHHHHHHH T ss_conf 99981816999999985 No 5 >>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS- related C3 botulinum toxin substrate 3; HET: GCP; 2.10A {Homo sapiens} (I:) Probab=20.73 E-value=35 Score=14.17 Aligned_cols=16 Identities=31% Similarity=0.829 Sum_probs=12.0 Q ss_pred CCCCCEEEEECHHHHH Q ss_conf 7898432301078999 Q gi|254780841|r 132 TEEHFFSGFPAVWNMV 147 (246) Q Consensus 132 ~~~~~F~GlP~pa~a~ 147 (246) .+.+-|.|+|..|..+ T Consensus 18 ~~tG~f~GlP~~W~~l 33 (35) T 2ov2_I 18 QHEQKFTGLPRQWQSL 33 (35) T ss_dssp TTTTEEESCCGGGTTT T ss_pred CCCCEEECCCHHHHHH T ss_conf 9998083499999997 No 6 >>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} (A:1-46) Probab=18.04 E-value=58 Score=12.92 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=13.9 Q ss_pred CCCCCEEEEECHHHHHHH Q ss_conf 789843230107899999 Q gi|254780841|r 132 TEEHFFSGFPAVWNMVVF 149 (246) Q Consensus 132 ~~~~~F~GlP~pa~a~~~ 149 (246) .+.+.|.|+|-.|..++- T Consensus 22 ~~tG~f~GlP~eW~~ll~ 39 (46) T 1f3m_A 22 AVTGEFTGMPEQWARLLQ 39 (46) T ss_dssp TTTTEEESCCHHHHHHHH T ss_pred CCCCCEECCCHHHHHHHH T ss_conf 999854079999999999 No 7 >>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function, structural genomics, unknown function, pseudo-knot; HET: CME; 1.70A {Saccharomyces cerevisiae} (A:1-28,A:190-240) Probab=12.71 E-value=81 Score=12.09 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 983123899998287436753263667557999999999999999 Q gi|254780841|r 55 IIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALY 99 (246) Q Consensus 55 i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGvaPa~l~y 99 (246) -||--||.+- .+|.-+ |.+++++.++|-=-|.---.+- T Consensus 12 ~~~~~~~~~~-~~~~~~------~~dl~kll~YIpkrV~AD~~Va 49 (79) T 2c5q_A 12 TCDISDGLLN-VYNIPT------GTDISKLVTYIEKSIEVDLLVS 49 (79) T ss_dssp HHHHHHHHHH-HHCCTT------TSCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHH-HCCCCC------CHHHHHHHHHHHHHHHHHHHHH T ss_conf 1378988886-427776------6129999999999998899999 No 8 >>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_A 2jkt_A (A:221-322) Probab=11.42 E-value=84 Score=11.98 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=15.1 Q ss_pred CCCCCEEEEECHHHHHHHHHH Q ss_conf 789843230107899999999 Q gi|254780841|r 132 TEEHFFSGFPAVWNMVVFSLI 152 (246) Q Consensus 132 ~~~~~F~GlP~pa~a~~~~~~ 152 (246) .+|..|.|+|.||--+=+.-. T Consensus 24 ~~eY~y~~vp~PwLQvklLrl 44 (102) T 2vgl_A 24 LQDYTYYFVPAPWLSVKLLRL 44 (102) T ss_dssp CSTTEETTEESHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHH T ss_conf 467777558858889999999 No 9 >>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202) Probab=10.49 E-value=96 Score=11.67 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=24.7 Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3899998287436753263667557999999999999999 Q gi|254780841|r 60 DGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALY 99 (246) Q Consensus 60 DG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGvaPa~l~y 99 (246) -..++=..|+.+-+ ..-+||+.|.++.+++=--.-+ T Consensus 20 ~~~~g~~t~S~all----ada~~sl~d~~~~~~~l~~~~~ 55 (202) T 3h90_A 20 KIFAWWYTGSVSIL----AALVDSLVDIGASLTNLLVVRY 55 (202) T ss_dssp HHHSSCSSSSSCCC----STTTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998089999----9999999999999999999998 No 10 >>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} (A:95-226) Probab=9.64 E-value=45 Score=13.52 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=26.1 Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHH Q ss_conf 12389999828743675326366755799999-999999999 Q gi|254780841|r 58 GFDGPIARKMRVKEVLPNWSGDTLDNIIDYLT-YVVLPAFAL 98 (246) Q Consensus 58 ~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vs-FGvaPa~l~ 98 (246) -+|+|.=+.+-. .|.-||.|.|=+++.|. ||++|--.+ T Consensus 32 ~lddR~v~~ll~---~p~~DGGqw~m~~nLi~KYGvVPk~~m 70 (132) T 2cb5_A 32 PEDGRLVQFLLM---NPANDGGQWDMLVNIVEKYGVIPKKCF 70 (132) T ss_dssp CTTSHHHHHHHH---CTTCSCBCHHHHHHHHHHHCCCBGGGS T ss_pred CCCHHHHHHHHC---CCCCCCCCHHHHHHHHHHCCCCCHHHC T ss_conf 863189999740---356898736999999998198767547 Done!